diff options
Diffstat (limited to 'pkgs/development')
1683 files changed, 35246 insertions, 36305 deletions
diff --git a/pkgs/development/beam-modules/elixir-ls/default.nix b/pkgs/development/beam-modules/elixir-ls/default.nix index c2f688efce4d8..79945e81af25f 100644 --- a/pkgs/development/beam-modules/elixir-ls/default.nix +++ b/pkgs/development/beam-modules/elixir-ls/default.nix @@ -4,12 +4,12 @@ let pname = "elixir-ls"; - version = "0.18.1"; + version = "0.19.0"; src = fetchFromGitHub { owner = "elixir-lsp"; repo = "elixir-ls"; rev = "v${version}"; - hash = "sha256-o5/H2FeDXzT/ZyWtLmRs+TWJQfmuDUnnR5Brvkifn6E="; + hash = "sha256-pd/ZkDpzlheEJfX7X6fFWY4Y5B5Y2EnJMBtuNHPuUJw="; fetchSubmodules = true; }; in @@ -21,7 +21,7 @@ mixRelease { mixFodDeps = fetchMixDeps { pname = "mix-deps-${pname}"; inherit src version elixir; - hash = "sha256-q4VKtGxrRaAhtNIJFjNN7tF+HFgU/UX9sKq0BkOIiQI="; + hash = "sha256-yxcUljclKKVFbY6iUphnTUSqMPpsEiPcw4yUs6atU0c="; }; # elixir-ls is an umbrella app diff --git a/pkgs/development/compilers/ante/Cargo.lock b/pkgs/development/compilers/ante/Cargo.lock index 3713109a5949a..a3ffcbfbdaf45 100644 --- a/pkgs/development/compilers/ante/Cargo.lock +++ b/pkgs/development/compilers/ante/Cargo.lock @@ -4,9 +4,9 @@ version = 3 [[package]] name = "ahash" -version = "0.7.6" +version = "0.7.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "fcb51a0695d8f838b1ee009b3fbf66bda078cd64590202a864a8f3e8c4315c47" +checksum = "5a824f2aa7e75a0c98c5a504fceb80649e9c35265d44525b5f94de4771a395cd" dependencies = [ "getrandom", "once_cell", @@ -15,18 +15,67 @@ dependencies = [ [[package]] name = "aho-corasick" -version = "0.7.18" +version = "1.1.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1e37cfd5e7657ada45f742d6e99ca5788580b5c529dc78faf11ece6dc702656f" +checksum = "b2969dcb958b36655471fc61f7e416fa76033bdd4bfed0678d8fee1e2d07a1f0" dependencies = [ "memchr", ] [[package]] +name = "anstream" +version = "0.6.4" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "2ab91ebe16eb252986481c5b62f6098f3b698a45e34b5b98200cf20dd2484a44" +dependencies = [ + "anstyle", + "anstyle-parse", + "anstyle-query", + "anstyle-wincon", + "colorchoice", + "utf8parse", +] + +[[package]] +name = "anstyle" +version = "1.0.4" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "7079075b41f533b8c61d2a4d073c4676e1f8b249ff94a393b0595db304e0dd87" + +[[package]] +name = "anstyle-parse" +version = "0.2.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "317b9a89c1868f5ea6ff1d9539a69f45dffc21ce321ac1fd1160dfa48c8e2140" +dependencies = [ + "utf8parse", +] + +[[package]] +name = "anstyle-query" +version = "1.0.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "5ca11d4be1bab0c8bc8734a9aa7bf4ee8316d462a08c6ac5052f888fef5b494b" +dependencies = [ + "windows-sys 0.48.0", +] + +[[package]] +name = "anstyle-wincon" +version = "3.0.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "f0699d10d2f4d628a98ee7b57b289abbc98ff3bad977cb3152709d4bf2330628" +dependencies = [ + "anstyle", + "windows-sys 0.48.0", +] + +[[package]] name = "ante" version = "0.1.1" dependencies = [ "clap", + "clap_complete", "colored", "cranelift", "cranelift-jit", @@ -36,25 +85,15 @@ dependencies = [ "goldentests", "inkwell", "mimalloc", + "petgraph", "target-lexicon", ] [[package]] name = "anyhow" -version = "1.0.62" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1485d4d2cc45e7b201ee3767015c96faa5904387c9d87c6efdd0fb511f12d305" - -[[package]] -name = "atty" -version = "0.2.14" +version = "1.0.75" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d9b39be18770d11421cdb1b9947a45dd3f37e93092cbf377614828a319d5fee8" -dependencies = [ - "hermit-abi", - "libc", - "winapi", -] +checksum = "a4668cab20f66d8d020e1fbc0ebe47217433c1b6c8f2040faf858554e394ace6" [[package]] name = "autocfg" @@ -69,16 +108,25 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "bef38d45163c2f1dde094a7dfd33ccf595c92905c8f8f4fdc18d06fb1037718a" [[package]] +name = "bitflags" +version = "2.4.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "327762f6e5a765692301e5bb513e0d9fef63be86bbc14528052b1cd3e6f03e07" + +[[package]] name = "byteorder" -version = "1.4.3" +version = "1.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "14c189c53d098945499cdfa7ecc63567cf3886b3332b312a5b4585d8d3a6a610" +checksum = "1fd0f2584146f6f2ef48085050886acf353beff7305ebd1ae69500e27c67f64b" [[package]] name = "cc" -version = "1.0.73" +version = "1.0.83" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2fff2a6927b3bb87f9595d67196a70493f627687a71d87a0d692242c33f58c11" +checksum = "f1174fb0b6ec23863f8b971027804a42614e347eafb0a95bf0b12cdae21fc4d0" +dependencies = [ + "libc", +] [[package]] name = "cfg-if" @@ -88,29 +136,42 @@ checksum = "baf1de4339761588bc0619e3cbc0120ee582ebb74b53b4efbf79117bd2da40fd" [[package]] name = "clap" -version = "3.2.17" +version = "4.4.8" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "29e724a68d9319343bb3328c9cc2dfde263f4b3142ee1059a9980580171c954b" +checksum = "2275f18819641850fa26c89acc84d465c1bf91ce57bc2748b28c420473352f64" dependencies = [ - "atty", - "bitflags", + "clap_builder", "clap_derive", +] + +[[package]] +name = "clap_builder" +version = "4.4.8" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "07cdf1b148b25c1e1f7a42225e30a0d99a615cd4637eae7365548dd4529b95bc" +dependencies = [ + "anstream", + "anstyle", "clap_lex", - "indexmap", - "once_cell", "strsim", - "termcolor", - "textwrap", +] + +[[package]] +name = "clap_complete" +version = "4.4.4" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "bffe91f06a11b4b9420f62103854e90867812cd5d01557f853c5ee8e791b12ae" +dependencies = [ + "clap", ] [[package]] name = "clap_derive" -version = "3.2.17" +version = "4.4.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "13547f7012c01ab4a0e8f8967730ada8f9fdf419e8b6c792788f39cf4e46eefa" +checksum = "cf9804afaaf59a91e75b022a30fb7229a7901f60c755489cc61c9b423b836442" dependencies = [ "heck", - "proc-macro-error", "proc-macro2", "quote", "syn", @@ -118,22 +179,25 @@ dependencies = [ [[package]] name = "clap_lex" -version = "0.2.4" +version = "0.6.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2850f2f5a82cbf437dd5af4d49848fbdfc27c157c3d010345776f952765261c5" -dependencies = [ - "os_str_bytes", -] +checksum = "702fc72eb24e5a1e48ce58027a675bc24edd52096d5397d4aea7c6dd9eca0bd1" + +[[package]] +name = "colorchoice" +version = "1.0.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "acbf1af155f9b9ef647e42cdc158db4b64a1b61f743629225fde6f3e0be2a7c7" [[package]] name = "colored" -version = "2.0.0" +version = "2.0.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b3616f750b84d8f0de8a58bda93e08e2a81ad3f523089b05f1dffecab48c6cbd" +checksum = "2674ec482fbc38012cf31e6c42ba0177b431a0cb6f15fe40efa5aab1bda516f6" dependencies = [ - "atty", + "is-terminal", "lazy_static", - "winapi", + "windows-sys 0.48.0", ] [[package]] @@ -226,7 +290,7 @@ dependencies = [ "log", "region", "target-lexicon", - "windows-sys", + "windows-sys 0.36.1", ] [[package]] @@ -274,20 +338,10 @@ dependencies = [ ] [[package]] -name = "crossbeam-channel" -version = "0.5.6" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c2dd04ddaf88237dc3b8d8f9a3c1004b506b54b3313403944054d23c0870c521" -dependencies = [ - "cfg-if", - "crossbeam-utils", -] - -[[package]] name = "crossbeam-deque" -version = "0.8.2" +version = "0.8.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "715e8152b692bba2d374b53d4875445368fdf21a94751410af607a5ac677d1fc" +checksum = "ce6fd6f855243022dcecf8702fef0c297d4338e226845fe067f6341ad9fa0cef" dependencies = [ "cfg-if", "crossbeam-epoch", @@ -296,26 +350,24 @@ dependencies = [ [[package]] name = "crossbeam-epoch" -version = "0.9.10" +version = "0.9.15" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "045ebe27666471bb549370b4b0b3e51b07f56325befa4284db65fc89c02511b1" +checksum = "ae211234986c545741a7dc064309f67ee1e5ad243d0e48335adc0484d960bcc7" dependencies = [ "autocfg", "cfg-if", "crossbeam-utils", "memoffset", - "once_cell", "scopeguard", ] [[package]] name = "crossbeam-utils" -version = "0.8.11" +version = "0.8.16" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "51887d4adc7b564537b15adcfb307936f8075dfcd5f00dde9a9f1d29383682bc" +checksum = "5a22b2d63d4d1dc0b7f1b6b2747dd0088008a9be28b6ddf0b1e7d335e3037294" dependencies = [ "cfg-if", - "once_cell", ] [[package]] @@ -326,9 +378,31 @@ checksum = "524cbf6897b527295dff137cec09ecf3a05f4fddffd7dfcd1585403449e74198" [[package]] name = "either" -version = "1.8.0" +version = "1.9.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "a26ae43d7bcc3b814de94796a5e736d4029efb0ee900c12e2d54c993ad1a1e07" + +[[package]] +name = "equivalent" +version = "1.0.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "5443807d6dff69373d433ab9ef5378ad8df50ca6298caf15de6e52e24aaf54d5" + +[[package]] +name = "errno" +version = "0.3.7" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "f258a7194e7f7c2a7837a8913aeab7fd8c383457034fa20ce4dd3dcb813e8eb8" +dependencies = [ + "libc", + "windows-sys 0.48.0", +] + +[[package]] +name = "fixedbitset" +version = "0.4.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "90e5c1c8368803113bf0c9584fc495a58b86dc8a29edbf8fe877d21d9507e797" +checksum = "0ce7134b9999ecaf8bcd65542e436736ef32ddca1b3e06094cb6ec5755203b80" [[package]] name = "fxhash" @@ -341,9 +415,9 @@ dependencies = [ [[package]] name = "getrandom" -version = "0.2.7" +version = "0.2.11" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4eb1a864a501629691edf6c15a593b7a51eebaa1e8468e9ddc623de7c9b58ec6" +checksum = "fe9006bed769170c11f845cf00c7c1e9092aeb3f268e007c3e760ac68008070f" dependencies = [ "cfg-if", "libc", @@ -352,9 +426,9 @@ dependencies = [ [[package]] name = "goldentests" -version = "1.1.0" +version = "1.1.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "50fd8aa88e90e6cfee4b0781b623216f7631f24e671f5f687194c9bf4cccc1bf" +checksum = "8476785a67758ffc17be1d41009468ef27fb96b5211c9d375a4356bf891dcbc5" dependencies = [ "colored", "rayon", @@ -378,47 +452,60 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "8a9ee70c43aaf417c914396645a0fa852624801b24ebb7ae78fe8272889ac888" [[package]] +name = "hashbrown" +version = "0.14.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "f93e7192158dbcda357bdec5fb5788eebf8bbac027f3f33e719d29135ae84156" + +[[package]] name = "heck" -version = "0.4.0" +version = "0.4.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2540771e65fc8cb83cd6e8a237f70c319bd5c29f78ed1084ba5d50eeac86f7f9" +checksum = "95505c38b4572b2d910cecb0281560f54b440a19336cbbcb27bf6ce6adc6f5a8" [[package]] name = "hermit-abi" -version = "0.1.19" +version = "0.3.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "62b467343b94ba476dcb2500d242dadbb39557df889310ac77c5d99100aaac33" -dependencies = [ - "libc", -] +checksum = "d77f7ec81a6d05a3abb01ab6eb7590f6083d08449fe5a1c8b1e620283546ccb7" [[package]] name = "indexmap" -version = "1.9.1" +version = "1.9.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "10a35a97730320ffe8e2d410b5d3b69279b98d2c14bdb8b70ea89ecf7888d41e" +checksum = "bd070e393353796e801d209ad339e89596eb4c8d430d18ede6a1cced8fafbd99" dependencies = [ "autocfg", "hashbrown 0.12.3", ] [[package]] +name = "indexmap" +version = "2.1.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "d530e1a18b1cb4c484e6e34556a0d948706958449fca0cab753d649f2bce3d1f" +dependencies = [ + "equivalent", + "hashbrown 0.14.2", +] + +[[package]] name = "inkwell" -version = "0.1.0" -source = "git+https://github.com/TheDan64/inkwell?branch=master#40d7ba0d387819140ca85c9bbf14ccdbd199ceee" +version = "0.2.0" +source = "git+https://github.com/TheDan64/inkwell?branch=master#7a09ad8a5f3b1fc416f95b5e1c97d33df0ab3f06" dependencies = [ "either", "inkwell_internals", "libc", "llvm-sys", "once_cell", - "parking_lot", + "thiserror", ] [[package]] name = "inkwell_internals" -version = "0.5.0" -source = "git+https://github.com/TheDan64/inkwell?branch=master#40d7ba0d387819140ca85c9bbf14ccdbd199ceee" +version = "0.8.0" +source = "git+https://github.com/TheDan64/inkwell?branch=master#7a09ad8a5f3b1fc416f95b5e1c97d33df0ab3f06" dependencies = [ "proc-macro2", "quote", @@ -426,6 +513,17 @@ dependencies = [ ] [[package]] +name = "is-terminal" +version = "0.4.9" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "cb0889898416213fab133e1d33a0e5858a48177452750691bde3666d0fdbaf8b" +dependencies = [ + "hermit-abi", + "rustix", + "windows-sys 0.48.0", +] + +[[package]] name = "lazy_static" version = "1.4.0" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -433,24 +531,31 @@ checksum = "e2abad23fbc42b3700f2f279844dc832adb2b2eb069b2df918f455c4e18cc646" [[package]] name = "libc" -version = "0.2.132" +version = "0.2.150" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8371e4e5341c3a96db127eb2465ac681ced4c433e01dd0e938adbef26ba93ba5" +checksum = "89d92a4743f9a61002fae18374ed11e7973f530cb3a3255fb354818118b2203c" [[package]] name = "libmimalloc-sys" -version = "0.1.25" +version = "0.1.35" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "11ca136052550448f55df7898c6dbe651c6b574fe38a0d9ea687a9f8088a2e2c" +checksum = "3979b5c37ece694f1f5e51e7ecc871fdb0f517ed04ee45f88d15d6d553cb9664" dependencies = [ "cc", + "libc", ] [[package]] +name = "linux-raw-sys" +version = "0.4.11" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "969488b55f8ac402214f3f5fd243ebb7206cf82de60d3172994707a4bcc2b829" + +[[package]] name = "llvm-sys" -version = "130.0.4" +version = "160.1.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "bdb6ea20e8a348f6db0b43a7f009fa7d981d22edf4cbe2e0c7b2247dbb25be61" +checksum = "0bf51981ac0622b10fe4790763e3de1f3d68a0ee4222e03accaaab6731bd508d" dependencies = [ "cc", "lazy_static", @@ -460,23 +565,10 @@ dependencies = [ ] [[package]] -name = "lock_api" -version = "0.4.7" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "327fa5b6a6940e4699ec49a9beae1ea4845c6bab9314e4f84ac68742139d8c53" -dependencies = [ - "autocfg", - "scopeguard", -] - -[[package]] name = "log" -version = "0.4.17" +version = "0.4.20" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "abb12e687cfb44aa40f41fc3978ef76448f9b6038cad6aef4259d3c095a2382e" -dependencies = [ - "cfg-if", -] +checksum = "b5e6163cb8c49088c2c36f57875e58ccd8c87c7427f7fbd50ea6710b2f3f2e8f" [[package]] name = "mach" @@ -489,39 +581,29 @@ dependencies = [ [[package]] name = "memchr" -version = "2.5.0" +version = "2.6.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2dffe52ecf27772e601905b7522cb4ef790d2cc203488bbd0e2fe85fcb74566d" +checksum = "f665ee40bc4a3c5590afb1e9677db74a508659dfd71e126420da8274909a0167" [[package]] 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[[package]] -name = "semver-parser" -version = "0.10.2" +name = "semver" +version = "1.0.20" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "00b0bef5b7f9e0df16536d3961cfb6e84331c065b4066afb39768d0e319411f7" -dependencies = [ - "pest", -] +checksum = "836fa6a3e1e547f9a2c4040802ec865b5d85f4014efe00555d7090a3dcaa1090" [[package]] name = "shlex" -version = "1.1.0" +version = "1.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "43b2853a4d09f215c24cc5489c992ce46052d359b5109343cbafbf26bc62f8a3" +checksum = "a7cee0529a6d40f580e7a5e6c495c8fbfe21b7b52795ed4bb5e62cdf92bc6380" [[package]] name = "similar" -version = "2.2.0" +version = "2.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "62ac7f900db32bf3fd12e0117dd3dc4da74bc52ebaac97f39668446d89694803" +checksum = "2aeaf503862c419d66959f5d7ca015337d864e9c49485d771b732e2a20453597" [[package]] name = "slice-group-by" -version = "0.3.0" +version = "0.3.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "03b634d87b960ab1a38c4fe143b508576f075e7c978bfad18217645ebfdfa2ec" +checksum = "826167069c09b99d56f31e9ae5c99049e932a98c9dc2dac47645b08dbbf76ba7" [[package]] name = "smallvec" -version = "1.9.0" +version = "1.11.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2fd0db749597d91ff862fd1d55ea87f7855a744a8425a64695b6fca237d1dad1" +checksum = "4dccd0940a2dcdf68d092b8cbab7dc0ad8fa938bf95787e1b916b0e3d0e8e970" [[package]] name = "strsim" @@ -750,9 +779,9 @@ checksum = "73473c0e59e6d5812c5dfe2a064a6444949f089e20eec9a2e5506596494e4623" [[package]] name = "syn" -version = "1.0.99" +version = "2.0.39" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "58dbef6ec655055e20b86b15a8cc6d439cca19b667537ac6a1369572d151ab13" +checksum = "23e78b90f2fcf45d3e842032ce32e3f2d1545ba6636271dcbf24fa306d87be7a" dependencies = [ "proc-macro2", "quote", @@ -761,39 +790,24 @@ 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"windows_x86_64_gnu", - "windows_x86_64_msvc", + "windows_aarch64_msvc 0.36.1", + "windows_i686_gnu 0.36.1", + "windows_i686_msvc 0.36.1", + "windows_x86_64_gnu 0.36.1", + "windows_x86_64_msvc 0.36.1", +] + +[[package]] +name = "windows-sys" +version = "0.48.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "677d2418bec65e3338edb076e806bc1ec15693c5d0104683f2efe857f61056a9" +dependencies = [ + "windows-targets", ] [[package]] +name = "windows-targets" +version = "0.48.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "9a2fa6e2155d7247be68c096456083145c183cbbbc2764150dda45a87197940c" +dependencies = [ + "windows_aarch64_gnullvm", + "windows_aarch64_msvc 0.48.5", + "windows_i686_gnu 0.48.5", + "windows_i686_msvc 0.48.5", + "windows_x86_64_gnu 0.48.5", + "windows_x86_64_gnullvm", + "windows_x86_64_msvc 0.48.5", +] + +[[package]] +name = "windows_aarch64_gnullvm" +version = "0.48.5" +source = 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version = "0.36.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "e2e7917148b2812d1eeafaeb22a97e4813dfa60a3f8f78ebe204bcc88f12f024" [[package]] +name = "windows_i686_msvc" +version = "0.48.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "8f55c233f70c4b27f66c523580f78f1004e8b5a8b659e05a4eb49d4166cca406" + +[[package]] name = "windows_x86_64_gnu" version = "0.36.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "4dcd171b8776c41b97521e5da127a2d86ad280114807d0b2ab1e462bc764d9e1" [[package]] +name = "windows_x86_64_gnu" +version = "0.48.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "53d40abd2583d23e4718fddf1ebec84dbff8381c07cae67ff7768bbf19c6718e" + +[[package]] +name = "windows_x86_64_gnullvm" +version = "0.48.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "0b7b52767868a23d5bab768e390dc5f5c55825b6d30b86c844ff2dc7414044cc" + +[[package]] name = "windows_x86_64_msvc" version = "0.36.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "c811ca4a8c853ef420abd8592ba53ddbbac90410fab6903b3e79972a631f7680" + +[[package]] +name = "windows_x86_64_msvc" +version = "0.48.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "ed94fce61571a4006852b7389a063ab983c02eb1bb37b47f8272ce92d06d9538" diff --git a/pkgs/development/compilers/ante/default.nix b/pkgs/development/compilers/ante/default.nix index f5b5d6cacaf79..ebd70475d0fab 100644 --- a/pkgs/development/compilers/ante/default.nix +++ b/pkgs/development/compilers/ante/default.nix @@ -2,24 +2,24 @@ , lib , libffi , libxml2 -, llvmPackages_13 +, llvmPackages_16 , ncurses , rustPlatform }: rustPlatform.buildRustPackage { pname = "ante"; - version = "unstable-2022-08-22"; + version = "unstable-2023-12-18"; src = fetchFromGitHub { owner = "jfecher"; repo = "ante"; - rev = "8b708d549c213c34e4ca62d31cf0dd25bfa7b548"; - sha256 = "sha256-s8nDuG32lI4pBLsOzgfyUGpc7/r0j4EhzH54ErBK7A0="; + rev = "e38231ffa51b84a2ca53b4b0439d1ca5e0dea32a"; + hash = "sha256-UKEoOm+Jc0YUwO74Tn038MLeX/c3d2z8I0cTBVfX61U="; }; cargoLock = { lockFile = ./Cargo.lock; outputHashes = { - "inkwell-0.1.0" = "sha256-vWrpF66r5HalGQz2jSmQljfz0EgS7shLw7A8q75j3tE="; + "inkwell-0.2.0" = "sha256-eMoclRtekg8v+m5KsTcjB3zCdPkcJy42NALEEuT/fw8="; }; }; @@ -28,7 +28,7 @@ rustPlatform.buildRustPackage { llvm-sys requires a specific version of llvmPackages, that is not the same as the one included by default with rustPlatform. */ - nativeBuildInputs = [ llvmPackages_13.llvm ]; + nativeBuildInputs = [ llvmPackages_16.llvm ]; buildInputs = [ libffi libxml2 ncurses ]; postPatch = '' @@ -37,13 +37,13 @@ rustPlatform.buildRustPackage { ''; preBuild = let - major = lib.versions.major llvmPackages_13.llvm.version; - minor = lib.versions.minor llvmPackages_13.llvm.version; + major = lib.versions.major llvmPackages_16.llvm.version; + minor = lib.versions.minor llvmPackages_16.llvm.version; llvm-sys-ver = "${major}${builtins.substring 0 1 minor}"; in '' # On some architectures llvm-sys is not using the package listed inside nativeBuildInputs - export LLVM_SYS_${llvm-sys-ver}_PREFIX=${llvmPackages_13.llvm.dev} + export LLVM_SYS_${llvm-sys-ver}_PREFIX=${llvmPackages_16.llvm.dev} export ANTE_STDLIB_DIR=$out/lib mkdir -p $ANTE_STDLIB_DIR cp -r $src/stdlib/* $ANTE_STDLIB_DIR diff --git a/pkgs/development/compilers/assemblyscript/default.nix b/pkgs/development/compilers/assemblyscript/default.nix index c297ad56c557d..b0fd15d47941a 100644 --- a/pkgs/development/compilers/assemblyscript/default.nix +++ b/pkgs/development/compilers/assemblyscript/default.nix @@ -5,16 +5,16 @@ buildNpmPackage rec { pname = "assemblyscript"; - version = "0.27.22"; + version = "0.27.23"; src = fetchFromGitHub { owner = "AssemblyScript"; repo = pname; rev = "v${version}"; - sha256 = "sha256-8j012eAM+tl8AH5vNhg9xKDRJt5pZKV9KNwJFmUgXMY="; + sha256 = "sha256-pKb46AfL5MGKiH1AjyPeHw7ZeLnIiPYmf8b2bOkuRe0="; }; - npmDepsHash = "sha256-y7gY9VhbR+xfXf3OvKvpcohk2mwfa0uOQO7Nmg+L6ug="; + npmDepsHash = "sha256-io/3T0LE1kupjtMg8rpQlRmIn048X0jqhKKj/W7Ilo0="; meta = with lib; { homepage = "https://github.com/AssemblyScript/${pname}"; diff --git a/pkgs/development/compilers/blueprint/default.nix b/pkgs/development/compilers/blueprint/default.nix index f52b43f49a82a..856fcaa5d5abd 100644 --- a/pkgs/development/compilers/blueprint/default.nix +++ b/pkgs/development/compilers/blueprint/default.nix @@ -66,7 +66,7 @@ stdenv.mkDerivation (finalAttrs: { description = "A markup language for GTK user interface files"; homepage = "https://gitlab.gnome.org/jwestman/blueprint-compiler"; license = licenses.lgpl3Plus; - maintainers = with maintainers; [ benediktbroich paveloom ranfdev ]; + maintainers = with maintainers; [ benediktbroich ranfdev ]; platforms = platforms.unix; }; }) diff --git a/pkgs/development/compilers/chicken/5/deps.toml b/pkgs/development/compilers/chicken/5/deps.toml index 4a6a39ce71853..743da0b0cfe42 100644 --- a/pkgs/development/compilers/chicken/5/deps.toml +++ b/pkgs/development/compilers/chicken/5/deps.toml @@ -2,16 +2,16 @@ [7off] dependencies = ["anaphora", "define-options", "lowdown", "matchable", "srfi-1", "sxml-transforms", "sxpath", "utf8", "srfi-42", "srfi-69", "strse", "uri-common"] license = "agpl" -sha256 = "01dp84dnvvvg26k27bwh8m64qss5jqy8iifykaymz3brragg3406" +sha256 = "0hsqxva92k3yasrlgl7bbq3z3d2d2nd3r3i2v6vimv7mp2chfkdr" synopsis = "Markdown to Gemini text" -version = "1.30" +version = "1.31" [F-operator] -dependencies = ["utf8", "miscmacros", "datatype", "box"] +dependencies = ["miscmacros", "datatype", "box"] license = "bsd" -sha256 = "1zhfvcv8628s9sria1i63sdp88h5gpm96iv023qvm07g9z9qv5dv" +sha256 = "0i7yfc8pxszvsgls871s2bwy11yxyxr4sqbl8gc21g29xm7vjivq" synopsis = "Shift/Reset Control Operators" -version = "4.1.3" +version = "4.1.4" [abnf] dependencies = ["srfi-1", "utf8", "lexgen"] @@ -79,9 +79,9 @@ version = "3.0.0" [amb] dependencies = ["srfi-1"] license = "bsd" -sha256 = "1kkzmbym1xhgxby9grjamjs3yajz5l32v3wg2b6xsl7v0infkszs" +sha256 = "0ggwmsd4igg099ikn5qja5nkqmrnsw0byyk3q9y04ygvzalqyb36" synopsis = "The non-deterministic backtracking ambivalence operator" -version = "3.0.8" +version = "3.0.9" [amqp] dependencies = ["bitstring", "mailbox", "srfi-18", "uri-generic"] @@ -146,6 +146,13 @@ sha256 = "1yq819vbb813svxvxad4h99vrhvf7rs8cv9dsnj85rcvi60w7299" synopsis = "Automatically compile Scheme scripts on demand" version = "1.1.0" +[awful-main] +dependencies = ["awful", "spiffy", "define-options"] +license = "bsd" +sha256 = "1zpnk3xjkn2pdfw953ximq6i0d3v3mak8ydl6a3nb2zz1daq7044" +synopsis = "Turn awful web applications into static executables" +version = "0.1.0" + [awful-path-matchers] dependencies = [] license = "bsd" @@ -254,9 +261,9 @@ version = "0.4.1" [binary-search] dependencies = [] license = "bsd" -sha256 = "1r3a5387knvg29hp3pn0xs5zzql6g7pkjzl2h6b0ds8gsyqf65b7" +sha256 = "0hycs33782xvcc4p0jl2a716fi388v8vbvf9isgrnl9ahqnk9kia" synopsis = "Binary search algorithm" -version = "0.1" +version = "0.2" [bind] dependencies = ["silex", "matchable", "coops", "srfi-1", "regex"] @@ -345,16 +352,16 @@ version = "0.11" [brev-separate] dependencies = ["matchable", "miscmacros", "srfi-1", "srfi-69"] license = "bsd-1-clause" -sha256 = "12pl79bfgii9d7kg30qlk94ag0rm0ca4zr4nc95spiva4p8j6ixx" +sha256 = "0ycm95vcf1dj6m3kqii7b2a5kxyd1m6lzksz77ispay14srgw8rd" synopsis = "Hodge podge of macros and combinators" -version = "1.92" +version = "1.95" [brev] dependencies = ["anaphora", "brev-separate", "clojurian", "combinators", "define-options", "dwim-sort", "fix-me-now", "acetone", "html-parser", "match-generics", "http-client", "matchable", "miscmacros", "scsh-process", "sequences", "srfi-1", "srfi-42", "srfi-69", "strse", "sxml-serializer", "sxml-transforms", "sxpath", "tree", "uri-common"] license = "public-domain" -sha256 = "0ddf3j3lxv35kgnrzi9lq6ckn1sj149nr0nckj8ghqvfzkqa9flw" +sha256 = "1kbphbz21rlrsfcfqg77hm1vv7wh9z1gcwh5lb2hlrqp2yl7m7yc" synopsis = "A huge pile of batteries and shortcuts" -version = "1.37" +version = "1.41" [byte-blob] dependencies = ["srfi-1"] @@ -415,9 +422,9 @@ version = "0.4" [check-errors] dependencies = [] license = "bsd" -sha256 = "1ra8pvs0qnfqsjbrsn0k94drwx5ydvhapziv6dcqcb118iimnrmd" +sha256 = "09ffyffrv3gamjsjgbisn3yxb40wbqy5pfrs6dxw20n1ffimgfw5" synopsis = "Argument checks & errors" -version = "3.7.1" +version = "3.8.0" [checks] dependencies = ["simple-exceptions"] @@ -436,9 +443,9 @@ version = "0.1.3" [chickadee] dependencies = ["matchable", "uri-common", "uri-generic", "intarweb", "simple-sha1", "spiffy", "spiffy-request-vars", "sxml-transforms", "chicken-doc", "chicken-doc-admin", "chicken-doc-html", "srfi-18"] license = "bsd" -sha256 = "02wrg3s1hx5slbx0vmg1zmknchwksxxw75yld1nyqxf5wyv2dibj" +sha256 = "0blbxy2l7kii85glczrxrqc8n7794qxswq67v0vl6hxajwij197i" synopsis = "chicken-doc web server" -version = "0.12.1" +version = "0.12.2" [chicken-belt] dependencies = ["matchable", "srfi-1", "srfi-13"] @@ -524,6 +531,13 @@ sha256 = "1rxyr6di07zqfjzbb0kgdx43m2b1zpjrkaph8x078jgqawyblc6v" synopsis = "A chicken wrapper for cmark with markdown to sxml capabilities" version = "0.1.0" +[coin-change] +dependencies = ["srfi-1"] +license = "unlicense" +sha256 = "09p83afsh2dx4y2cpyi55bf2br03ysdpq9xrqik7fmks3913kxmk" +synopsis = "Greedy solver for the coin change problem" +version = "1.0.2" + [color] dependencies = ["fmt", "records", "srfi-13"] license = "bsd" @@ -632,9 +646,9 @@ version = "1.4" [csm] dependencies = ["matchable", "srfi-1", "srfi-13", "srfi-14", "miscmacros"] license = "bsd" -sha256 = "0rfysqqxn92asa6wd1dnzc372982nsr81ay7i7x1cn62bw5gs1pl" +sha256 = "1bvawrbslsfzxlhal5abyss0nj0jddqbs5ran58nygfc1myn3vfs" synopsis = "a build system" -version = "0.4" +version = "0.5" [cst] dependencies = ["brev-separate", "srfi-1", "define-options", "match-generics"] @@ -693,11 +707,11 @@ synopsis = "explicitly implicit renaming" version = "1.2" [define-options] -dependencies = ["tree", "brev-separate", "getopt-long", "srfi-1"] +dependencies = ["brev-separate", "getopt-long", "matchable", "quasiwalk", "srfi-1"] license = "lgpl" -sha256 = "03l46ma7d1yy5c8b4b71bwr0vhd0h3w57b3wr25bawk10ngr2qn6" +sha256 = "1j9lj5kj3j8jhclxnxrrc2wn6qn9j0bhr2y9fydg05an9q7jmrh0" synopsis = "Conveniently bind to getopt-long options" -version = "1.7" +version = "1.23" [define-record-and-printer] dependencies = ["hahn", "matchable"] @@ -1043,11 +1057,11 @@ synopsis = "Client library for the gemini:// protocol" version = "0.2.1" [geminih] -dependencies = ["clojurian", "acetone", "anaphora", "strse", "match-generics", "brev-separate", "srfi-1"] +dependencies = ["clojurian", "acetone", "anaphora", "html-parser", "strse", "match-generics", "brev-separate", "srfi-1"] license = "bsd-1-clause" -sha256 = "158jprg7y49avv4wnbmp2i0zxw1vwk2am8nfb7nc603rhrc0xism" +sha256 = "1i2nmzk61szkpg0a2r4i6gx00hnj78b3dqkk34y349h29dm2jv56" synopsis = "Gemtext to SXML" -version = "1.10" +version = "1.13" [gemrefinder] dependencies = ["scsh-process", "srfi-1", "srfi-42", "define-options", "combinators", "brev-separate", "match-generics", "strse"] @@ -1094,9 +1108,9 @@ version = "1.21" [getopt-utils] dependencies = ["utf8", "srfi-1", "getopt-long"] license = "bsd" -sha256 = "0jbzv8s0b3pnlqzl4vls0fssw56ivz1g9afdj90kxaxlxv1b1l0k" +sha256 = "0i17fj29zbbm05x68h7fy524ypk8vbr62gq6jkrwf18371l0l767" synopsis = "Utilities for getopt-long" -version = "1.1.0" +version = "1.1.1" [git] dependencies = ["srfi-69", "foreigners", "module-declarations", "srfi-1"] @@ -1353,9 +1367,9 @@ version = "1.2" [intarweb] dependencies = ["srfi-1", "srfi-13", "srfi-14", "defstruct", "uri-common", "base64"] license = "bsd" -sha256 = "1vpdrbrmjsdbl4cb3c82iqcvyn9318jzapg6bl00dkbn6ykyisr3" +sha256 = "0khzz6w8dh8sbiaqw3b68p0v8lv4bjwxipkb9cqj2q9r7zl84555" synopsis = "A more convenient HTTP library" -version = "2.0.3" +version = "2.1.0" [integer-map] dependencies = ["srfi-1", "srfi-128", "srfi-143", "srfi-158"] @@ -1388,9 +1402,9 @@ version = "0.2" [ioctl] dependencies = ["foreigners"] license = "bsd" -sha256 = "1knyb80hm9l3j2cw71i5j73vjhw0g5l4vyyjyp1h5j6fwnsywpfb" +sha256 = "0qs2daw16zw4jpqnb0q2nnb0qanki7nl0k437b9m4a7qslhdqw6r" synopsis = "ioctl system call interface" -version = "0.3" +version = "0.4" [ipfs] dependencies = ["http-client", "intarweb", "medea", "srfi-1", "srfi-13", "srfi-189", "srfi-197", "uri-common"] @@ -1449,11 +1463,11 @@ synopsis = "Parser combinators for JavaScript Object Notation (JSON)." version = "7.0" [json-rpc] -dependencies = ["r7rs", "srfi-1", "srfi-18", "srfi-69", "srfi-180"] +dependencies = ["r7rs", "srfi-1", "srfi-18", "srfi-69", "srfi-180", "utf8"] license = "mit" -sha256 = "09ydq35aaap14vxw0533mnxvqq9c8yir1dc7bn61q4l7vzfl44k8" +sha256 = "10f2iw93fhc0vha6axqzd27akh0ys7a6q0vwhpl0jzw4s48h3ss3" synopsis = "A JSON RPC library for R7RS scheme." -version = "0.4.2" +version = "0.4.5a" [json-utils] dependencies = ["utf8", "srfi-1", "srfi-69", "vector-lib", "miscmacros", "moremacros"] @@ -1528,9 +1542,9 @@ version = "1.2" [levenshtein] dependencies = ["srfi-1", "srfi-13", "srfi-63", "srfi-69", "vector-lib", "utf8", "miscmacros", "record-variants", "check-errors"] license = "bsd" -sha256 = "1v8g5ghilraz2lx0fif3yb1rlg3n51zvvik2l12ycqh0wj0pz59l" +sha256 = "07jwz006c6yhibg7d9nb35rif04810820pss5mg7c7mbn2nzmq1q" synopsis = "Levenshtein edit distance" -version = "2.2.8" +version = "2.4.0" [lexgen] dependencies = ["srfi-1", "utf8", "srfi-127"] @@ -1624,11 +1638,11 @@ synopsis = "A pure Chicken Markdown parser" version = "3" [lsp-server] -dependencies = ["apropos", "chicken-doc", "json-rpc", "nrepl", "r7rs", "srfi-1", "srfi-130", "srfi-133", "srfi-18", "srfi-69", "uri-generic", "utf8"] +dependencies = ["apropos", "chicken-doc", "json-rpc", "nrepl", "r7rs", "srfi-1", "srfi-18", "srfi-69", "srfi-130", "srfi-133", "srfi-180", "uri-generic", "utf8"] license = "mit" -sha256 = "0wbigf0s37377hjfxspwydhvnds165mhp2qa14iskvsw5zbp8g80" +sha256 = "09fak8d29qmxynh4361prhfg971j74mha6pw311a6kmz88h9zp0h" synopsis = "LSP Server for CHICKEN." -version = "0.4.1" +version = "0.4.4" [macaw] dependencies = [] @@ -1654,9 +1668,9 @@ version = "3.3.10" [make-tests] dependencies = ["brev-separate", "srfi-1", "uri-common"] license = "public-domain" -sha256 = "0ca8fx40x42zqqsp3dmw5cb9xsjlz4cp71yh9kgcb29n4ig80r97" +sha256 = "174nbjy27iiz29g906p9rsg036mgwjnl7ll0qc2clqzq1svkgqc7" synopsis = "Create unit tests from a file of expressions" -version = "1.10" +version = "1.12" [make] dependencies = ["srfi-1"] @@ -1682,9 +1696,9 @@ version = "0.3.1" [match-generics] dependencies = ["brev-separate", "matchable", "quasiwalk", "srfi-1"] license = "bsd-1-clause" -sha256 = "07ssmsa52ixwn5wj8b11a0adglyxycf2f7qkkfrwwikalwpvnwdp" +sha256 = "1js4kq8hp6n8182mzyrs7q7aa6hf9q5y8q3zp2lkplpp862x2sks" synopsis = "matchable generics" -version = "2.4" +version = "2.8" [matchable] dependencies = [] @@ -1827,11 +1841,11 @@ synopsis = "Various helper macros" version = "1.0" [mistie] -dependencies = [] +dependencies = ["srfi-1"] license = "bsd" -sha256 = "0j5cqkqqfmq3g0brws02vsvn7c68rdw4k0i17gm7pbsjwjb6qggw" +sha256 = "0qfz8zc41wm2afwwbg1c8gmpzlph07nsj4r86lx01af9s03nvpfa" synopsis = "A programmable filter" -version = "1.6" +version = "1.9" [modular-arithmetic] dependencies = ["srfi-1", "matchable"] @@ -1868,6 +1882,13 @@ sha256 = "09kc4wmhwkdhspk8g0i357qdq9mp1xcalgnqi8z9yasfy2k6gk1h" synopsis = "More miscellaneous macros" version = "2.5.0" +[mosquitto] +dependencies = ["srfi-1"] +license = "mit" +sha256 = "0v03hljm71hl6xr1pffzcpk2izil9w2sp9k68a7iirvpcvqg9iph" +synopsis = "Bindings to mosquitto MQTT client library" +version = "0.1.3" + [mpd-client] dependencies = ["regex", "srfi-1"] license = "bsd" @@ -1903,6 +1924,13 @@ sha256 = "01ma6cxmbc0bmk4598q3ag28pnbqlmcfq11mbs4c87ir82bkvz7h" synopsis = "" version = "1.0.0.6" +[nanosleep] +dependencies = [] +license = "bsd" +sha256 = "1nynvd6sv8ffxk0jlvr77mgm0r1rww4c1n5k5m799b36w4gs6df9" +synopsis = "Interface to POSIX nanosleep" +version = "0.3.0" + [natural-sort] dependencies = [] license = "mit" @@ -1976,9 +2004,9 @@ version = "1.21" [openssl] dependencies = ["srfi-1", "srfi-13", "srfi-18", "address-info"] license = "bsd" -sha256 = "06bj8jqmfk9vlwny5w53bfrahv9wdbxvqyqijxvhmzy8z0p3slx0" +sha256 = "018x80cxs7glvqn7nhjcfbvw36bn3pf4y24a6cn7mz25z6597vg0" synopsis = "Bindings to the OpenSSL SSL/TLS library" -version = "2.2.4" +version = "2.2.5" [operations] dependencies = ["srfi-1"] @@ -2403,9 +2431,9 @@ version = "1.7.1" [salmonella] dependencies = [] license = "bsd" -sha256 = "1xr01d9ax106c5q3xx0lj92q24jqiywasamimpzvda4b17bb34n5" +sha256 = "1r60dlr1qcjlirbwqpn23aphczlkhrhskgqmw51973w46ww839nf" synopsis = "A tool for testing eggs" -version = "3.0.1" +version = "3.1.1" [salt] dependencies = ["datatype", "matchable", "make", "mathh", "lalr", "datatype", "unitconv", "fmt"] @@ -2435,6 +2463,13 @@ sha256 = "03nn90fi18gn29vxvslyi5zxhl5hx2m7f7ikfy9a3ypnkw1bh8qk" synopsis = "Tools for Scheme development" version = "0.3.2" +[scheme-indent] +dependencies = ["srfi-1"] +license = "bsd" +sha256 = "0brwmphr724shd32dcixsn9wz9zqrhg27g7rjbiz96885maj6nwf" +synopsis = "A Scheme code indenter" +version = "0.5" + [scheme2c-compatibility] dependencies = ["srfi-1", "srfi-13", "srfi-14", "traversal", "foreigners", "xlib"] license = "lgpl" @@ -2508,9 +2543,9 @@ version = "0.0.13" [sendfile] dependencies = ["memory-mapped-files"] license = "bsd" -sha256 = "00fnmx6frrvms7s61in2jmfp852rif8nlh3akv1wrn3xm6i7gsyw" +sha256 = "1vi5i8df146j2gh4x7s8fry0bdzfm57f7v62zd5sd0x45h72lffw" synopsis = "Sending a file over the network" -version = "1.9.1" +version = "2.0" [sequences-utils] dependencies = ["srfi-1", "srfi-69", "sequences"] @@ -2596,6 +2631,13 @@ sha256 = "0phsfz2263yiy9z33sf7qjf4i8kh51n5yf1g2wmb0pb63vcdqy8n" synopsis = "Some user-friendly exception routines" version = "1.3.1" +[simple-logger] +dependencies = [] +license = "bsd" +sha256 = "05d9fjn6m9m8c4n2blig844vhv9cp1rmyrcxnkzxfxxiw9y4wfhf" +synopsis = "A very simple logger" +version = "1.0.0" + [simple-loops] dependencies = [] license = "bsd" @@ -2795,9 +2837,9 @@ version = "0.2" [sql-de-lite] dependencies = ["foreigners", "object-evict", "srfi-1", "srfi-18", "srfi-69"] license = "bsd" -sha256 = "06pr2b0ix5f27cd3ymxbbihdng3n9i9a22dr2g0dlp3ks6i174g3" +sha256 = "1vx7j1y6b1wkhf3wn3bgf62a3zn3wk9clcygn80k4cjpma2p8ig5" synopsis = "SQLite 3 interface" -version = "0.10.0" +version = "0.10.1" [sql-null] dependencies = [] @@ -2849,11 +2891,11 @@ synopsis = "SRFI-111: Boxes" version = "0.5" [srfi-113] -dependencies = ["srfi-69", "srfi-128"] +dependencies = ["r7rs", "srfi-69", "srfi-128"] license = "bsd" -sha256 = "1psipd38r5jwb4l2q7rxj5yjq3zmisqnmqq64dqx1nxhhbh01wrw" +sha256 = "0ripxgwfwizj9mzb04lsbvavvy7qima81cyqm830j59sixj6ldc2" synopsis = "SRFI-113: Sets and Bags" -version = "1.1" +version = "1.2.0" [srfi-115] dependencies = ["srfi-14", "srfi-152"] @@ -3124,9 +3166,9 @@ version = "2.0.0" [srfi-209] dependencies = ["srfi-1", "srfi-69", "srfi-113", "srfi-128", "srfi-178", "typed-records"] license = "mit" -sha256 = "0dphpi92afn569pgi3jfwdxm7h63nd0s9s42f5m106wfkf79si9r" +sha256 = "04fghjk0rfcz0fp71dvwvlxmxshrbmrs85g4l5cx8sp74y047qlv" synopsis = "SRFI 209: Enums and enum sets" -version = "1.2.2" +version = "1.3.1" [srfi-216] dependencies = ["srfi-18"] @@ -3173,9 +3215,9 @@ version = "4.2.3" [srfi-29] dependencies = ["srfi-1", "srfi-69", "utf8", "locale", "posix-utils", "condition-utils", "check-errors"] license = "bsd" -sha256 = "15g2knq5b76f3nhxnmxidhkvbw9dyyc00hrzvsnpkmnfqzcmxbxw" +sha256 = "1pz31xrfja4y43ci5n8gplhdnasbyxx0kwlmcjzycs1js4b66ld1" synopsis = "Localization" -version = "3.0.7" +version = "3.0.8" [srfi-34] dependencies = [] @@ -3432,9 +3474,9 @@ version = "2.7.3" [strse] dependencies = ["matchable", "srfi-13", "miscmacros"] license = "bsd-1-clause" -sha256 = "0gmc7pzhhs964swgq709j89z9lkydy1y267lbw0mza949h6dx5fv" +sha256 = "1abwb27l8ms7cwdc03wfa51jdqngjdfxdfayjynsvbhw5hp4rxmf" synopsis = "A string DSL" -version = "1.38" +version = "1.39" [stty] dependencies = ["foreigners", "srfi-69"] @@ -3635,9 +3677,9 @@ version = "2.4.2" [tiny-prolog] dependencies = ["srfi-69"] license = "bsd" -sha256 = "0bw1l5vsyw2z3yvv6zlgvzk1hlm16ql6m8gdfd94fk691pvjpnd0" +sha256 = "0zz468zvr7v1dh2sg48kmlq43dbim66md3dv2dchdpzfjg378w8k" synopsis = "Tiny PROLOG interpreter." -version = "2.0" +version = "2.1" [tokyocabinet] dependencies = [] @@ -3668,18 +3710,18 @@ synopsis = "tracing and breakpoints" version = "2.0" [transducers] -dependencies = ["srfi-1", "srfi-128", "srfi-133", "srfi-143", "srfi-146", "srfi-160", "check-errors", "r7rs"] +dependencies = ["r7rs", "srfi-1", "srfi-128", "srfi-133", "srfi-146", "srfi-160", "check-errors"] license = "mit" -sha256 = "080lwlgvqpwdlqjdb71c1i657wq6ax2v4r9117fh83wr8bs3h1j9" +sha256 = "1bz05dy7kjypk85yck3a8h6iji6kkmnb48kpqdqvj9nm0kvg2nwd" synopsis = "Transducers for working with foldable data types." -version = "0.5.1" +version = "0.5.4" [transmission] dependencies = ["http-client", "intarweb", "medea", "r7rs", "srfi-1", "srfi-189", "uri-common"] license = "unlicense" -sha256 = "0x94ihhpway5rzsrviwnmzm7h38p1s0np7f59nxp0a99vcy9x2f0" +sha256 = "1483d5kz13zvrqpacvb7lfvc178x3j9236vmdv37ndsvjfy7m6fc" synopsis = "Transmission RPC" -version = "0.2.2" +version = "0.3.0" [traversal] dependencies = ["srfi-1", "vector-lib"] @@ -3810,9 +3852,9 @@ version = "3.6.3" [uuid-lib] dependencies = ["record-variants"] license = "bsd" -sha256 = "1hk5p2yvwq4dx93a1wnxggrbwkh050b6m9jlw44s7xvhxhvdqyns" +sha256 = "16b03b6d29mjn8bcil0ln0vq85dxxvzlxrpnpblf68n7l9ix8qnc" synopsis = "OSF DCE 1.1 UUID" -version = "0.0.14" +version = "0.0.15" [uuid] dependencies = [] @@ -3880,9 +3922,9 @@ version = "1.1" [xj] dependencies = ["fmt", "html-parser", "srfi-1", "utf8", "brev-separate"] license = "bsd-3-clause" -sha256 = "0ygznmn4p5df6q7f1m0nv4hz4l5ym3nmm2zp8y3h80piy0cb9c0a" +sha256 = "15a7p9qq33mlxa3h50s142zy9zchpdpkdkx51kfcadh0rbj0x7bi" synopsis = "Unix filter that turns XML into JSON" -version = "1.28" +version = "1.29" [xlib] dependencies = ["matchable", "srfi-13"] @@ -3936,9 +3978,9 @@ version = "0.2" [zshbrev] dependencies = ["brev"] license = "lgplv3" -sha256 = "1id8a728ibi3fzcpfdd7ary41g7nrlb7pc3vjpmz70jp1q53qppx" +sha256 = "1zmb84z22p8gv1bk05x7daqpl5h1z71hpivkyc1wbjfxyymmyaxj" synopsis = "Access Chicken functions from any shell and access zsh functions from Chicken" -version = "1.20" +version = "1.21" [zstd] dependencies = [] diff --git a/pkgs/development/compilers/chicken/5/overrides.nix b/pkgs/development/compilers/chicken/5/overrides.nix index a5fd3f94830b7..adaad31b52bb2 100644 --- a/pkgs/development/compilers/chicken/5/overrides.nix +++ b/pkgs/development/compilers/chicken/5/overrides.nix @@ -57,6 +57,7 @@ in mdh = addToBuildInputs pkgs.pcre; # missing dependency in upstream egg mistie = addToPropagatedBuildInputs (with chickenEggs; [ srfi-1 ]); + mosquitto = addToPropagatedBuildInputs ([ pkgs.mosquitto ]); nanomsg = addToBuildInputs pkgs.nanomsg; ncurses = addToBuildInputsWithPkgConfig [ pkgs.ncurses ]; opencl = addToBuildInputs ([ pkgs.opencl-headers pkgs.ocl-icd ] diff --git a/pkgs/development/compilers/circt/default.nix b/pkgs/development/compilers/circt/default.nix index 6fb609699bad4..dfda406ab9b6d 100644 --- a/pkgs/development/compilers/circt/default.nix +++ b/pkgs/development/compilers/circt/default.nix @@ -17,12 +17,12 @@ let in stdenv.mkDerivation rec { pname = "circt"; - version = "1.61.0"; + version = "1.64.0"; src = fetchFromGitHub { owner = "llvm"; repo = "circt"; rev = "firtool-${version}"; - sha256 = "sha256-3zuaruaveUeJ7uKP5fMiDFPOGKcs6aTNuGOuhxV6nss="; + sha256 = "sha256-tZ8IQa01hYVJZdUKPd0rMGfAScuhZPzpwP51WWXERGw="; fetchSubmodules = true; }; diff --git a/pkgs/development/compilers/cmdstan/default.nix b/pkgs/development/compilers/cmdstan/default.nix index ad84e13d369ec..817234f799915 100644 --- a/pkgs/development/compilers/cmdstan/default.nix +++ b/pkgs/development/compilers/cmdstan/default.nix @@ -11,14 +11,14 @@ stdenv.mkDerivation rec { pname = "cmdstan"; - version = "2.33.1"; + version = "2.34.1"; src = fetchFromGitHub { owner = "stan-dev"; repo = pname; rev = "v${version}"; fetchSubmodules = true; - hash = "sha256-c+L/6PjW7YgmXHuKhKjiRofBRAhKYCzFCZ6BOX5AmC4="; + hash = "sha256-gze8kd5zSs9nUlSY7AJwpx+jnc9Y21ahzDJmynlqm1Y="; }; postPatch = '' diff --git a/pkgs/development/compilers/codon/default.nix b/pkgs/development/compilers/codon/default.nix index 70cd16327299d..e9393956e4737 100644 --- a/pkgs/development/compilers/codon/default.nix +++ b/pkgs/development/compilers/codon/default.nix @@ -134,7 +134,7 @@ stdenv.mkDerivation { meta = { description = "A high-performance, zero-overhead, extensible Python compiler using LLVM"; homepage = "https://docs.exaloop.io/codon"; - maintainers = [ lib.maintainers.paveloom ]; + maintainers = [ ]; license = lib.licenses.bsl11; platforms = lib.platforms.all; }; diff --git a/pkgs/development/compilers/dart/sources.nix b/pkgs/development/compilers/dart/sources.nix index 600e284d84499..865a75bbff5f5 100644 --- a/pkgs/development/compilers/dart/sources.nix +++ b/pkgs/development/compilers/dart/sources.nix @@ -1,24 +1,24 @@ -let version = "3.2.4"; in +let version = "3.2.6"; in { fetchurl }: { versionUsed = version; "${version}-x86_64-darwin" = fetchurl { url = "https://storage.googleapis.com/dart-archive/channels/stable/release/${version}/sdk/dartsdk-macos-x64-release.zip"; - sha256 = "107sq5m684mxw5k21zfs3iyihzbqkfmh0vpj17qca19rghnxgn02"; + sha256 = "05w5v6f302gwwpa3my8baz4spmdmqrimmc659wgki1h64ch1yrlp"; }; "${version}-aarch64-darwin" = fetchurl { url = "https://storage.googleapis.com/dart-archive/channels/stable/release/${version}/sdk/dartsdk-macos-arm64-release.zip"; - sha256 = "08jbcdm5li30xdy85whdah186g0yiasgl12h6vi1vgld15ifjsab"; + sha256 = "1dmd70jjpfi19rmlvj2hbggw92z03jm8irrwx6r0bk7r748cj11f"; }; "${version}-aarch64-linux" = fetchurl { url = "https://storage.googleapis.com/dart-archive/channels/stable/release/${version}/sdk/dartsdk-linux-arm64-release.zip"; - sha256 = "0f40riqcdnjwjnv6si5186h6akrnhnwqrfrgfvm4y0gpblw88c2s"; + sha256 = "1hs1mvk90qb0nijm8wcvv6xkd79z44i2bpcv2nh933lysdys664q"; }; "${version}-x86_64-linux" = fetchurl { url = "https://storage.googleapis.com/dart-archive/channels/stable/release/${version}/sdk/dartsdk-linux-x64-release.zip"; - sha256 = "1bkrfg3xzkc4zrbl5ialg5jwpb7l0xmrd9aj7x5kwz2v8n8w013n"; + sha256 = "0j0xmyxdmzn4ii24j27yw6l3074ay4n2qjyzh967cpbg9yhr0cr5"; }; "${version}-i686-linux" = fetchurl { url = "https://storage.googleapis.com/dart-archive/channels/stable/release/${version}/sdk/dartsdk-linux-ia32-release.zip"; - sha256 = "0jddia0s7byl7p6qbljp444qs11r8ff58s5fbchcrsmkry3pg8gi"; + sha256 = "0ml9dvnd7f0rld3wfnnmv7arfs821zg8rqaq1c7zvqhkj3i0dwci"; }; } diff --git a/pkgs/development/compilers/dmd/default.nix b/pkgs/development/compilers/dmd/default.nix index 59a8ad8c63c65..bdc9fafd4f06b 100644 --- a/pkgs/development/compilers/dmd/default.nix +++ b/pkgs/development/compilers/dmd/default.nix @@ -1,5 +1,5 @@ import ./generic.nix { - version = "2.106.0"; - dmdSha256 = "sha256-H28X+8qAjnc5KIvZ7HRVCtjNpf1hBwSPL6QIVeWCjKM="; - phobosSha256 = "sha256-umsPMQbomJUu/QBMSgSC0jEajxiJwv1Lay4q4tvfnsI="; + version = "2.106.1"; + dmdSha256 = "sha256-vjYa/Pxrz7J2htXT+fa+xaeen/Vxne++lELbHTSXBK8="; + phobosSha256 = "sha256-yRL9ub3u4mREG9PVxBvgQ/LDXD57RadPTZ2h08qyh/s="; } diff --git a/pkgs/development/compilers/dotnet/versions/6.0.nix b/pkgs/development/compilers/dotnet/versions/6.0.nix index 86e08e356833b..91340bbf0d182 100644 --- a/pkgs/development/compilers/dotnet/versions/6.0.nix +++ b/pkgs/development/compilers/dotnet/versions/6.0.nix @@ -3,177 +3,177 @@ # v6.0 (active) { aspnetcore_6_0 = buildAspNetCore { - version = "6.0.25"; + version = "6.0.26"; srcs = { x86_64-linux = { - url = "https://download.visualstudio.microsoft.com/download/pr/0cf64d28-dec3-4553-b38d-8f526e6f64b0/0bf8e79d48da8cb4913bc1c969653e9a/aspnetcore-runtime-6.0.25-linux-x64.tar.gz"; - sha512 = "ea1e9ce3f90dbde4241d78422a4ce0f8865f44f870f205be26b99878c13d56903919f052dec6559c4791e9943d3081bc8a9fd2cf2ee6a0283f613b1bdecf69e1"; + url = "https://download.visualstudio.microsoft.com/download/pr/b63daa46-51f4-480e-ad03-ef2c5a6a2885/ae059763456991305109bf98b3a67640/aspnetcore-runtime-6.0.26-linux-x64.tar.gz"; + sha512 = "51a0091ffa5abb2a6f2f968f76848e475310fbb33126238bc1358ee86e24bfd3f046d32af2f39dc7a30b14becdd637d1314ca4f4b771fe5fa0954474a605e4fd"; }; aarch64-linux = { - url = "https://download.visualstudio.microsoft.com/download/pr/8f085f4e-ce83-494f-add1-7e6d4e04f90e/398b661de84bda4d74b5c04fa709eadb/aspnetcore-runtime-6.0.25-linux-arm64.tar.gz"; - sha512 = "fdd2e717963f213abbab6dcd367664ebedc2f2ec9c2433fca27c4d2eb7704a73d3f4ec5b354b24d5be77f3683605a56f5675d1d543c5f76d042a1353deab8d73"; + url = "https://download.visualstudio.microsoft.com/download/pr/cfc40e77-a6de-481f-812d-6867289e2d8b/eeedeebccc412fd01110d8b59050754d/aspnetcore-runtime-6.0.26-linux-arm64.tar.gz"; + sha512 = "48330ea4d98fc565c9553ea119f56e3e485ca30a0986f43e78335e263d9cc82d17b7ced8115480d1adb33298cbc5cb2b0759bc89d516659c4c59eab9520a2254"; }; x86_64-darwin = { - url = "https://download.visualstudio.microsoft.com/download/pr/eb5d3ec0-10d3-4ed4-986a-9b350f200d7c/e59374e45f5f1be3c111f53c7e2ebb32/aspnetcore-runtime-6.0.25-osx-x64.tar.gz"; - sha512 = "d58721d8f0a7cf6538446b37ff6399c285e4fbbbc30ac0b550cada361ce2cbc981039e8c90e3d038de1886e91be5457acd5c88bd72008a208c62dd533080864d"; + url = "https://download.visualstudio.microsoft.com/download/pr/19e27b0b-cd99-4b84-bc7a-05eda52bd77f/a85cbbb13b629b75b2026bb8c6238e6e/aspnetcore-runtime-6.0.26-osx-x64.tar.gz"; + sha512 = "9ffb209f2f07392935b9627e22b44260803cc5e21ab8d09152d5499ebae51d6f488992664bc44a23334332a1183c444b47cada319cf4d461dd95a6b78f1cd825"; }; aarch64-darwin = { - url = "https://download.visualstudio.microsoft.com/download/pr/fab54ac5-5712-4c94-b9a7-68e18533b8ee/8197e36c3a2522e233e4d66c3a7b098b/aspnetcore-runtime-6.0.25-osx-arm64.tar.gz"; - sha512 = "ab9ccefa4d0249aa1ec313e02aa7dfec9b048f3db42881c808050efe3956749fdcadfbb937cfec19ac37fed70c81894dcf428a34b27c52e0cd2911fd98d29e9a"; + url = "https://download.visualstudio.microsoft.com/download/pr/e5181497-c33a-4341-a5a6-57eb21f39d33/85b574ef2b884f084b604d1869d72c02/aspnetcore-runtime-6.0.26-osx-arm64.tar.gz"; + sha512 = "641cb5542c5d4b0103a2ac0154e2a99d755a4987fcdad854cda1fc75bdde08432eab73db69c444628e7d68496ed6e36fa52eda5033e118ed4b5140b8d5c47d96"; }; }; }; runtime_6_0 = buildNetRuntime { - version = "6.0.25"; + version = "6.0.26"; srcs = { x86_64-linux = { - url = "https://download.visualstudio.microsoft.com/download/pr/0e8de3f9-7fda-46b7-9337-a3709c8e385d/bc29c53eb79fda25abb0fb9be60c6a22/dotnet-runtime-6.0.25-linux-x64.tar.gz"; - sha512 = "9d4cd137353b6340162ca2c381342957e22d6cb419af9198a09f2354ba647ce0ddd007c58e464a47b48ac778ffc2b77569d8ca7921d0819aa92a5ac69d99de27"; + url = "https://download.visualstudio.microsoft.com/download/pr/1873e7f3-aa12-4189-8d6d-db0fb859211e/b36e8f8a6ceb63bc3cfac875c7bb63d0/dotnet-runtime-6.0.26-linux-x64.tar.gz"; + sha512 = "7336f71f7f99ffc3a44c7d730c6a1e08c5c0b6e05d2076a1963776f174f8588d31c9b783d1c4f645f7e7cc6a54077b798c6bde35ed4a812ffd9b2427d29b0b34"; }; aarch64-linux = { - url = "https://download.visualstudio.microsoft.com/download/pr/c5ebe66a-1815-4cdf-a099-af89dbf370b8/8162d0068512e14f69325d18ce10acb3/dotnet-runtime-6.0.25-linux-arm64.tar.gz"; - sha512 = "d7d5d9460cca02976b01b233e3bfca32f7739910dcbdab34ad035e7e0314204b84289a1ab11f82c36dcd517657749ec1fc4d4ead2c9ee0ab2ffabfc886f0e87a"; + url = "https://download.visualstudio.microsoft.com/download/pr/226d8ab0-8daf-47b1-80cb-a9b68badb28b/a4425bebee91775ce41a50aca80e09c1/dotnet-runtime-6.0.26-linux-arm64.tar.gz"; + sha512 = "775d96bb3dfa6f5e7f81829e7eedf0744aeb75d5e1a613622debd1f285f9eda694ae79effe531558dd8367dc4fad5d682039aa24fb2bbb39fb561c67aeeb4a18"; }; x86_64-darwin = { - url = "https://download.visualstudio.microsoft.com/download/pr/bb33d6bf-748c-47b0-8077-962fef12afc8/8a0fbc979b8bded0b4538d08e8f92916/dotnet-runtime-6.0.25-osx-x64.tar.gz"; - sha512 = "b9241a03aaa8ea56d54e3f1b13baabad9e3d6b2b16633f0c6c01d3513ec6ec7aadc455dc1bb7b096c7df75efcf54ef467e1fb8ad9f3777ad3b5236bfb0db0133"; + url = "https://download.visualstudio.microsoft.com/download/pr/51703c07-2cf0-415f-abbd-5d4bf2ffd56a/fc952db2ecb119fa2d58828d1046f974/dotnet-runtime-6.0.26-osx-x64.tar.gz"; + sha512 = "e2d51f955c841299fe6dabe1abce15ab2ffb2b9c624f5c2ad12685a14451fa62ed9452ae7d7d579f1beca784e4d4e3b532cf686e58490d44bbd0e022ddabd667"; }; aarch64-darwin = { - url = "https://download.visualstudio.microsoft.com/download/pr/5bb1393b-ffe1-4961-8d42-7272611a0399/6cb74b96d854a95fe4d42c62d359427c/dotnet-runtime-6.0.25-osx-arm64.tar.gz"; - sha512 = "b12e4e08d6f305e88bb7af385e5380b8bffbe190c4a17929d1bec18c37feb21298512dd24aa5b0f19b7cc775e9f54fa088ed0b22bdb05200f95ae6ca04e7d63e"; + url = "https://download.visualstudio.microsoft.com/download/pr/d76c6416-5a6d-42c0-99b0-a4bb0021426b/84ef0457a893dbf0d565a532fa9dd805/dotnet-runtime-6.0.26-osx-arm64.tar.gz"; + sha512 = "fba964511efd71b87aad92ac8a31d7a86cde605fc0eb9d57ea270067b22cd540a67451d8ff3a079fcec8fffcdcfcbd74cfcc89123c2b11096dca78cbfc891be3"; }; }; }; sdk_6_0 = buildNetSdk { - version = "6.0.417"; + version = "6.0.418"; srcs = { x86_64-linux = { - url = "https://download.visualstudio.microsoft.com/download/pr/1cac4d08-3025-4c00-972d-5c7ea446d1d7/a83bc5cbedf8b90495802ccfedaeb2e6/dotnet-sdk-6.0.417-linux-x64.tar.gz"; - sha512 = 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"1d9q0xcbj50fpbls0hvkk6n7aabg42a3kwszwnknfdabwzgmiyqh"; }) + (fetchNuGet { pname = "runtime.win-x86.Microsoft.NETCore.DotNetHost"; version = "6.0.26"; sha256 = "077lvw62nbs1xhn4xysml1vyzbqpq3h5x3x28cppjamcnaf00k56"; }) + (fetchNuGet { pname = "runtime.win-x86.Microsoft.NETCore.DotNetHostPolicy"; version = "6.0.26"; sha256 = "1fsz9x2qjavmvl3g7phxqj5cxm0z212dw5cz82f9njyi9m4q5bh9"; }) + (fetchNuGet { pname = "runtime.win-x86.Microsoft.NETCore.DotNetHostResolver"; version = "6.0.26"; sha256 = "1bxs8cnqny1rdh3q0glr1f2a669697rlr2zmcimhy84y1y46x3s3"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Host.linux-musl-arm"; version = "6.0.26"; sha256 = "02mdbziad0k3b6za8bp2n7qcqjigyawxkxzphlbqag5gcn7qacsz"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Host.osx-arm64"; version = "6.0.26"; sha256 = "1mq11xsv9g1vsasp6k80y7xlvwi9hrpk5dgm773fvy8538s01gfv"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.linux-musl-arm"; version = "6.0.26"; sha256 = "1731r332y4jxm7f64i1qg4dwb8fbq4q6p85azrrbvbrh08551rgq"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.osx-arm64"; version = "6.0.26"; sha256 = "1acn5zw1pxzmcg3c0pbf9hal36fbdh9mvbsiwra7simrk7hzqpdc"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Ref"; version = "6.0.26"; sha256 = "12gb52dhg5h9hgnyqh1zgj2w46paxv2pfh33pphl9ajhrdr7hlsb"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.Mono.linux-arm"; version = "6.0.26"; sha256 = "1fj70xx2hp4nly340pcvnxxaari7mixqwmwqrp3fkjnzv0s523f7"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.Mono.linux-arm64"; version = "6.0.26"; sha256 = "05hzps86qkx0jl8zn89732vw9a2wdxsszhzp6ld665hsjfs7xwr7"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.Mono.linux-musl-x64"; version = "6.0.26"; sha256 = "0s9b3ca10wapa0xhqk6yk2hh1rqi38l766fk62yp4d4rvj2sa0qq"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.Mono.linux-x64"; version = "6.0.26"; sha256 = "1f8axm5dz0bgm6hsdv2li2iw4y70ki9ac0xvk7q3cqmvrq0100c6"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.Mono.osx-arm64"; version = "6.0.26"; sha256 = "04iivbqh899d0ddnnicxzckiiv12iy8cfavmkv9w9zh8bw01isy1"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.Mono.osx-x64"; version = "6.0.26"; sha256 = "1sxj6sv0p3cbn030j9ivgww5pk4ffrh4wg3n1g50rxd3dvfml87v"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.Mono.win-x64"; version = "6.0.26"; sha256 = "09iynj920zr5c4jlrpim9qajyabxapmkzllvhhx47d88bngqqddx"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.Mono.win-x86"; version = "6.0.26"; sha256 = "1nnbr5v0asl7lrz484572wzhsrzdd0lq31dnxx05c3c1lplxzpgh"; }) + (fetchNuGet { pname = "runtime.linux-musl-arm.Microsoft.NETCore.DotNetAppHost"; version = "6.0.26"; sha256 = "1vqx13dbw932jx24h7qh49bmh755f28xlwiz6lpzvgz06fr1qb5x"; }) + (fetchNuGet { pname = "runtime.linux-musl-arm.Microsoft.NETCore.DotNetHost"; version = "6.0.26"; sha256 = "0qmbs7509p83l3gfdnckw5hpxkr50awvh3112r469f3zmn2s0wvb"; }) + (fetchNuGet { pname = "runtime.linux-musl-arm.Microsoft.NETCore.DotNetHostPolicy"; version = "6.0.26"; sha256 = "0yyxmbdqdzxw3fd36ngpy9j2c7qlmzjxrhqi4lyfz3icnzzb9cpi"; }) + (fetchNuGet { pname = "runtime.linux-musl-arm.Microsoft.NETCore.DotNetHostResolver"; version = "6.0.26"; sha256 = "1p3xq75bhv8nsrym88yij3wlwawvxca4lcfi8hn72qf1gqrsrfby"; }) + (fetchNuGet { pname = "runtime.osx-arm64.Microsoft.NETCore.DotNetAppHost"; version = "6.0.26"; sha256 = "1aznr59g2npja74qa7argkqlyca2sgzn55hy41pd5l5fv275bac3"; }) + (fetchNuGet { pname = "runtime.osx-arm64.Microsoft.NETCore.DotNetHost"; version = "6.0.26"; sha256 = "0xbkd0g7qd9jssbnknwqpmvbp4mnkj85bhh0pf489j5nr3cmbhjc"; }) + (fetchNuGet { pname = "runtime.osx-arm64.Microsoft.NETCore.DotNetHostPolicy"; version = "6.0.26"; sha256 = "1riw5l45wm4f51rfsxhs4r7k06q487zvxssfwc5xg8z0wzhf82gv"; }) + (fetchNuGet { pname = "runtime.osx-arm64.Microsoft.NETCore.DotNetHostResolver"; version = "6.0.26"; sha256 = "0207y7jgizr16hq7ml04s2xl8rrp5q87631wcj6sg53bm47nzls3"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Crossgen2.linux-musl-arm"; version = "6.0.26"; sha256 = "1cs3hij0lidd6wszbwp2kx46mqx5zyvin97sqy8dr1ywl1fb0zw4"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Crossgen2.linux-musl-arm64"; version = "6.0.26"; sha256 = "1brvsvbi55ph9gbx6i4vf2bpvaqk820vjik5x2zvz5kjc5wy9nxj"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Crossgen2.linux-musl-x64"; version = "6.0.26"; sha256 = "12m6619yqjs81xna3mw7xxwnddxxhffcihxqa5dhz04dca9grmvi"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Crossgen2.linux-arm"; version = "6.0.26"; sha256 = "0hv0zv2qw78z285bzckcznr2kqmfpl7ghxv1cb1d90lvhfyhhpz0"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Crossgen2.linux-arm64"; version = "6.0.26"; sha256 = "0prdggyp2cqdkxkm4rrk3rgvrj73s89rgkfznqsbd79j9sms5zmr"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Crossgen2.linux-x64"; version = "6.0.26"; sha256 = "1vwji98xhrmxcqr43f1ijq8bd94dq9cfp3h7g09rc5h327n92i6z"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Crossgen2.osx-x64"; version = "6.0.26"; sha256 = "0g81sv3jnmwmggsfqniv89fvwk4592bmy09m9fqggv88rfzfcl36"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Crossgen2.osx-arm64"; version = "6.0.26"; sha256 = "05lhb550f385lprzxdnsama7rac7bfml5p40r7rx3mqg3bs8waxv"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Host.win-arm"; version = "6.0.26"; sha256 = "19s0q3j5w31dnd9j4vnlxyak8cr8bgpwqy0i393ixa9148nfmk23"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.win-arm"; version = "6.0.26"; sha256 = "12whmsh15mb6ny0vazymsxpdp9aa6rjja4nifamm2ss8gzvcbqik"; }) + (fetchNuGet { pname = "runtime.win-arm.Microsoft.NETCore.DotNetAppHost"; version = "6.0.26"; sha256 = "0jw2zm5a590mai2wggbhz2h62596076c6p4ndb8z84mkjrm9aal2"; }) + (fetchNuGet { pname = "runtime.win-arm.Microsoft.NETCore.DotNetHost"; version = "6.0.26"; sha256 = "0wwwp4bsqdkkikwzfchb3d61i9dlpi80y7nlm8l6lyfxpjirszsp"; }) + (fetchNuGet { pname = "runtime.win-arm.Microsoft.NETCore.DotNetHostPolicy"; version = "6.0.26"; sha256 = "1cgmlkg5fnxf5al68m3218zdj5i186ijfly0w2c81fq2yyci6fb7"; }) + (fetchNuGet { pname = "runtime.win-arm.Microsoft.NETCore.DotNetHostResolver"; version = "6.0.26"; sha256 = "1sqqf6i98y1i7k0dfw51glvin8apf4nknqcjhq3sf1pxsa6c77m5"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Composite"; version = "6.0.26"; sha256 = "0qzca5yxxzjgzkvvp8ysvgbwmda5mw085zrk1ikm2094mswz4mvl"; }) ]; }; } diff --git a/pkgs/development/compilers/dotnet/versions/7.0.nix b/pkgs/development/compilers/dotnet/versions/7.0.nix index 1406a2ac6d996..0f64389b261e2 100644 --- a/pkgs/development/compilers/dotnet/versions/7.0.nix +++ b/pkgs/development/compilers/dotnet/versions/7.0.nix @@ -3,184 +3,184 @@ # v7.0 (maintenance) { aspnetcore_7_0 = buildAspNetCore { - version = "7.0.14"; + version = "7.0.15"; srcs = { x86_64-linux = { - url = "https://download.visualstudio.microsoft.com/download/pr/7a1d3e1e-ede9-4b28-a9c8-3023858b7f01/c9214ad6a85286f4abd026d23dca5d3c/aspnetcore-runtime-7.0.14-linux-x64.tar.gz"; - sha512 = "00f55556cb580d81bf0059a61a642ed8b405452d55e94460c03a0edec9a4f608fd78561560e5fc5bf6e42fb1f45420eba75f8d102d8bd46686379dab7ffde6f6"; + url = "https://download.visualstudio.microsoft.com/download/pr/30cb8b2d-ee36-421b-90d0-6650bf5180ad/9e2dff64d0134c46b74eafcad1bb658d/aspnetcore-runtime-7.0.15-linux-x64.tar.gz"; + sha512 = "8aae979c0e9c90e781b8747aba5d7e09c9a81845b936c9185dc16d519db3a4ad9e219da4bffe13476baa81c7ff3e1637e8ef031be1f9f305f7d1681568ae3aed"; }; aarch64-linux = { - url = "https://download.visualstudio.microsoft.com/download/pr/d7ed165d-32b2-435f-a747-9683d4f89354/3372ce43201a1977c30bc8236bf0443d/aspnetcore-runtime-7.0.14-linux-arm64.tar.gz"; - sha512 = "577d927686639241c00e2f07fcb11eb878d671e926c6fc058f879619452ab0af675db4c2dfd8aa9290f03cb11afcf5094be1beeb5fae491f50520e171e732a71"; + url = "https://download.visualstudio.microsoft.com/download/pr/fed5ac78-3c8f-4eb9-bc13-2df4e97d01e1/3125fd43ab4eaf0e3304839295bf4bfd/aspnetcore-runtime-7.0.15-linux-arm64.tar.gz"; + sha512 = "4139d28b0c67497854794d34ec3eb3d7f4a49f34be4ed43cb634be88e7315af81090dd851fe2cdd429bf0050345f14000d2f939c020aeb809a1696483afdebe6"; }; x86_64-darwin = { - url = "https://download.visualstudio.microsoft.com/download/pr/9d6a0fb7-65bd-4f61-8558-e545af46fee5/f16d3fccf91fde1481c04314fe851e2a/aspnetcore-runtime-7.0.14-osx-x64.tar.gz"; - sha512 = "37f526b1192f67792aa413f6035a6e67bb42cbbab7b240ec0194a0640ca08e98546796e751fe1700990b2c2c0b71ddc3516571536f1110b4db47b2a1b44301d3"; + url = "https://download.visualstudio.microsoft.com/download/pr/1d44c976-5d7e-441c-aaf2-1b43b95131cc/b9f0c5a91fceb7fd47c76a7097c75c78/aspnetcore-runtime-7.0.15-osx-x64.tar.gz"; + sha512 = "75d01e3e123abbb5851c709a13d186a11db425bf18c82f615b445c2ff6629264a4d41e8011d43a225816ac807c7c8793cb35bbaf506455a3169a741d637230d0"; }; aarch64-darwin = { - url = "https://download.visualstudio.microsoft.com/download/pr/c3308f4f-65c9-4855-99d3-21657f401854/d12446cf25f3fca12438881117d5b292/aspnetcore-runtime-7.0.14-osx-arm64.tar.gz"; - sha512 = "17f0c996b2e5586385b2e6cdcb187fce27e0c18f235c4198df9a2bac5475467fe6c9df6405e7cd75ad4bb1a5f6ce380e23330cb1a047c5930aeac9c6c89772ab"; + url = "https://download.visualstudio.microsoft.com/download/pr/478d989b-d381-448d-be80-f81c5ec93014/9a7b49e5a2c0720e290d19a9447984cc/aspnetcore-runtime-7.0.15-osx-arm64.tar.gz"; + sha512 = "7d090dfbc862d6329fefcb93ec74c5b82100fa1949ec92602b69871b48f467654fa6c18ec0553d1edd8908a87cc3682e809270c5fcfb3c93111be8adae86dd6a"; }; }; }; runtime_7_0 = buildNetRuntime { - version = "7.0.14"; + version = "7.0.15"; srcs = { x86_64-linux = { - url = "https://download.visualstudio.microsoft.com/download/pr/bece81ac-e35d-40e3-8b07-cf5b0c4872d9/d571e657adc85ec66141a82dd3ef8fea/dotnet-runtime-7.0.14-linux-x64.tar.gz"; - sha512 = "02fd66ef2059d124d9c4f3fbfd0d5b0375b83610cdf51a2972567e4bdaf1d55e532478533509ec2408c371e7fdd6efea8e9b9aec9eb5cd703e8e5d2814ef319b"; + url = "https://download.visualstudio.microsoft.com/download/pr/921a24a1-0a7c-4100-b72e-f948ff3b4614/1cf0fe858e6d42bf1ef88d775fd8d865/dotnet-runtime-7.0.15-linux-x64.tar.gz"; + sha512 = "3cec6eabe448ccf5105c2203928a6fe00e343f1f0d97c79614d41c198548a20659113b9507da95b63dedbd3caa6a66bf5f3750f4443744186e35e47de5c30555"; }; aarch64-linux = { - url = "https://download.visualstudio.microsoft.com/download/pr/6c6534cc-0798-4fc7-bc45-1101fd627181/4846e3b3bfd3570d2c6f3e3b6711efef/dotnet-runtime-7.0.14-linux-arm64.tar.gz"; - sha512 = "cf2dc2997b10148b558f78b2f2401acc83921a6b721c11199ac7dc77d8c9fb5500d7be092281f13f3c9b4287dedc6fdb56f242d9340568a0fc021055983f9cd8"; + url = "https://download.visualstudio.microsoft.com/download/pr/854685e1-521f-4784-8a6a-b49307a3a4a7/6079b3613f0a297df59ab563e31074bc/dotnet-runtime-7.0.15-linux-arm64.tar.gz"; + sha512 = "e5b71578142f81809dd3e2bd5a9d673459c3f311ee095429b8e59929bd3ea17169c880113b7c86b8940c2db4bb1138f4770883456102da6b4b42ab7f0da8f8ed"; }; x86_64-darwin = { - url = "https://download.visualstudio.microsoft.com/download/pr/49878be9-1cba-4e7d-943c-b0f6cf5abd71/1f4d396b60584080d4bfee86269a5e0f/dotnet-runtime-7.0.14-osx-x64.tar.gz"; - sha512 = "74f66428fdc77ae9d801e1f7559d99436c6d1fbee7a64d587e46637466873a32d76b867f5cf56c0951bb01450419b8f25e851e5ed0abe69444df8979312cf9a0"; + url = "https://download.visualstudio.microsoft.com/download/pr/f10c8029-961d-4c91-922e-d81eceda9434/004a62489c01ae2a41ac7ec1aba2eec7/dotnet-runtime-7.0.15-osx-x64.tar.gz"; + sha512 = "bab7013467ae933e18f0c963319f19a54816fb3b2bda35316d45affb683c4e74cc1f6f7cd289c3ca475a2a0eebbd2809831f5ef908039c200407341f2bebb5eb"; }; aarch64-darwin = { - url = "https://download.visualstudio.microsoft.com/download/pr/dcede156-7e96-4b45-b750-c0a4893448d7/8ab02359114d9f4930baea23f3b418be/dotnet-runtime-7.0.14-osx-arm64.tar.gz"; - sha512 = 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"14vbbqwixyz95skqg5lw9z634d5lw4660zzba036mlg8csq3m9b1"; }) + (fetchNuGet { pname = "runtime.win-arm64.Microsoft.NETCore.DotNetHostResolver"; version = "7.0.15"; sha256 = "16g06phagwnnry3fwh6b3c3iwhxmhw5ppnqynj4gcl2ir7bsdrb8"; }) + (fetchNuGet { pname = "runtime.win-x64.Microsoft.NETCore.DotNetAppHost"; version = "7.0.15"; sha256 = "178j0p4c5mxkaza5p2r3fxy613mzhs93a1jvkm8v9rq5qv8pwld3"; }) + (fetchNuGet { pname = "runtime.win-x64.Microsoft.NETCore.DotNetHost"; version = "7.0.15"; sha256 = "0l37908yz40pmqa2k8ssmj3ypgfa0cqmg9sg6c5b7liczdjnqyyr"; }) + (fetchNuGet { pname = "runtime.win-x64.Microsoft.NETCore.DotNetHostPolicy"; version = "7.0.15"; sha256 = "053ymy8khfq07p0r1kk35z1aykq68inck40j9l2lc4rixk2k9jhg"; }) + (fetchNuGet { pname = "runtime.win-x64.Microsoft.NETCore.DotNetHostResolver"; version = "7.0.15"; sha256 = "10cnsrxk97f3wxhjax8plbaj2vhcznz9mdybpj2az45rb2abh5vf"; }) + (fetchNuGet { pname = "runtime.win-x86.Microsoft.NETCore.DotNetAppHost"; version = "7.0.15"; sha256 = "1nm7n49jkkvp8j0qfq1dvn48vq9d872chaaly14awql6ypfym5pb"; }) + (fetchNuGet { pname = "runtime.win-x86.Microsoft.NETCore.DotNetHost"; version = "7.0.15"; sha256 = "1509qr4cb469hb4dgnmsgm21dyxzwhhyq2iag2z1cxbk44mjz2ma"; }) + (fetchNuGet { pname = "runtime.win-x86.Microsoft.NETCore.DotNetHostPolicy"; version = "7.0.15"; sha256 = "1738bri3bs89hig3149kb9m6ia8dc1vp5ivkiz265qkw6gvhncb9"; }) + (fetchNuGet { pname = "runtime.win-x86.Microsoft.NETCore.DotNetHostResolver"; version = "7.0.15"; sha256 = "0gq17d6jczj52lgc5c8i5k5gj9g37zp5gcsnvqdc5vaidq1g2ggr"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Host.linux-musl-arm"; version = "7.0.15"; sha256 = "099yrwc5f9lx0bczfq8dhq8v0l3hg0pspv3wr6yl2pqz2ziyk9ap"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Host.osx-arm64"; version = "7.0.15"; sha256 = "1lljcbkzs1l25ndwzcyhwdh4q4rildwz7vza921r0kcg8zdb7izz"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.linux-musl-arm"; version = "7.0.15"; sha256 = "0hi97qsr1w0r660rv3h1rqy7cn84pnkgx49l4ckll88klwyvpq9p"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.osx-arm64"; version = "7.0.15"; sha256 = "1wjfm26b0dq2lsa1zrc16xjxnpi1z3n2myd7myjvmlklbzl59x9c"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Ref"; version = "7.0.15"; sha256 = "0zg8lyik3sdg24vy6w8974iiccy8mzln8gw8rs356wswk7irrpk2"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.Mono.linux-arm"; version = "7.0.15"; sha256 = "03wsv6msyfg6fnbfy2hzkc67sxlhskcr6h3lndl5pyb5fvpqhj4h"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.Mono.linux-arm64"; version = "7.0.15"; sha256 = "02w4gk7zvdmpf774d2i2zqkz7nb98gbrp0rkv3klr53dklayqwhn"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.Mono.linux-musl-x64"; version = "7.0.15"; sha256 = "1bwam1av4rkx0pmf9x79lrgsnsimficm33jgm608f3csp8d69a9l"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.Mono.linux-x64"; version = "7.0.15"; sha256 = "08g46m9ksvi1bjbxfjd59npycwmmbdgkdw0162g97wbzz5bi2gdx"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.Mono.osx-arm64"; version = "7.0.15"; sha256 = "0dcpi92xgrqqqmg5ka7wjbibzkvfcfgzis5jpkkfxmw6m3srswxp"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.Mono.osx-x64"; version = "7.0.15"; sha256 = "1hw0djf8svihjl6mwwyj3zcx0rczf159v95w660rzh30xn737ykl"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.Mono.win-x64"; version = "7.0.15"; sha256 = "05pmq79i085r6g7l2gj96vxr0qr2m1775v2381ng6flmylyyjidq"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.Mono.win-x86"; version = "7.0.15"; sha256 = "1z2hj01n9r5s9x5vrvlhk7gbk8qp6381cmkksj45yqgn9ghkcid7"; }) + (fetchNuGet { pname = "runtime.linux-musl-arm.Microsoft.NETCore.DotNetAppHost"; version = "7.0.15"; sha256 = "00pbi47dnqns2xbkl72abfidssphi46vqa4qf8rwij7dvz46ddn2"; }) + (fetchNuGet { pname = "runtime.linux-musl-arm.Microsoft.NETCore.DotNetHost"; version = "7.0.15"; sha256 = "0if8hwxz2ibfmdzkpd8n6ga3zkvnrnd10vwxmj1wbld1c7ngfc0a"; }) + (fetchNuGet { pname = 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(fetchNuGet { pname = "Microsoft.NETCore.App.Crossgen2.linux-musl-arm"; version = "7.0.15"; sha256 = "0ndpv3xw74azx9kk9nk0fah97ysn7y006223mczk40cq32vwga3c"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Crossgen2.linux-musl-arm64"; version = "7.0.15"; sha256 = "00ji50aazc4wzwdbvm9yhxw681xpar5nk7f7lbbipxv3mip9lhwc"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Crossgen2.linux-musl-x64"; version = "7.0.15"; sha256 = "15wgv5x0z2kc1pnkwkflvmj7y6iwds5hb2pjz5gq9z24a5v68310"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Crossgen2.linux-arm"; version = "7.0.15"; sha256 = "0g3djzyhlnx2qmwlyjvc2raq5r2ysqim0wlkdsxw87gi7lxy5xdi"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Crossgen2.linux-arm64"; version = "7.0.15"; sha256 = "0acrs1msmxdwq9nrmw22660yj39vi4ywlfjdki8i5s3h2h3ah9dz"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Crossgen2.linux-x64"; version = "7.0.15"; sha256 = "047ydlw1348y36xz16sxvbvpc8ifypg9vbak43krshdxqkxdkbba"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Crossgen2.osx-x64"; version = "7.0.15"; sha256 = "1g5pmhknp9a3xai0p40idb2jds2s1kdpcfimcw0n8rc7w55vanqy"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Crossgen2.osx-arm64"; version = "7.0.15"; sha256 = "0dg2z3qph6ldapz6kz94pv9rrfkiqz0ydyy9rzcj93534iv72i4r"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Host.win-arm"; version = "7.0.15"; sha256 = "1zqqcmhbxyxi683l1qm3caj9d41agz564gsqg5ckb8zkpkwipilb"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.win-arm"; version = "7.0.15"; sha256 = "14ibzk7snns5d38ky1g5mwbxmf84x4kapyxfmnrz05y7584qxxai"; }) + (fetchNuGet { pname = "runtime.win-arm.Microsoft.NETCore.DotNetAppHost"; version = "7.0.15"; sha256 = "0cyw8m44i1yp85k651hwaqnfsc1hxla9wiin8159kjildzf618rg"; }) + (fetchNuGet { pname = "runtime.win-arm.Microsoft.NETCore.DotNetHost"; version = "7.0.15"; sha256 = "0xbbwrgzs8az1nkzipv50rr3iffs8pcnjcvxwmlmz1nrk3a3jhxi"; }) + (fetchNuGet { pname = "runtime.win-arm.Microsoft.NETCore.DotNetHostPolicy"; version = "7.0.15"; sha256 = "1r5vwnvkqv0xr2l8ypapps4b9qjgb1cw2fy66wrys62affhm06kg"; }) + (fetchNuGet { pname = "runtime.win-arm.Microsoft.NETCore.DotNetHostResolver"; version = "7.0.15"; sha256 = "1ayhr32dym33dqxs8lcg2v2vgx2ka8gc3h734wxzj3rrf4ngjswv"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Composite"; version = "7.0.15"; sha256 = "0jjjnva0qb81x8nldq6v2d1166xm5yhvjs19gbvww36y6zlmm5bc"; }) + (fetchNuGet { pname = "runtime.linux-arm64.Microsoft.DotNet.ILCompiler"; version = "7.0.15"; sha256 = "0wjlxvpp0pdmfzpn1c7izadwfjqh60s4cdg4fvbdjq70cgxwf83j"; }) + (fetchNuGet { pname = "runtime.linux-musl-arm64.Microsoft.DotNet.ILCompiler"; version = "7.0.15"; sha256 = "0mfwfr6fwp5hg33vmrdy0vk80a7xwg65zsqisgw9b8z07wsyj5k5"; }) + (fetchNuGet { pname = "runtime.linux-musl-x64.Microsoft.DotNet.ILCompiler"; version = "7.0.15"; sha256 = "0a56nn3d0vx4vanw0020sifayqrd3jqiyk7s3qdppkf7gxvd1wnm"; }) + (fetchNuGet { pname = "runtime.linux-x64.Microsoft.DotNet.ILCompiler"; version = "7.0.15"; sha256 = "027hn6c8qzr9jxz3q61fqcnhwj7k2mbcr3s20igmawhmjfrfcxvl"; }) + (fetchNuGet { pname = "runtime.osx-x64.Microsoft.DotNet.ILCompiler"; version = "7.0.15"; sha256 = "1swkh2ra7jqkghx5ka43s1s2nli21saypcnzjk9qfwh71np44ayc"; }) + (fetchNuGet { pname = "runtime.win-arm64.Microsoft.DotNet.ILCompiler"; version = "7.0.15"; sha256 = "12skw2zb5v6wfs9za0s1hhcgdfm490zmm032l9wsrwj3flfx50ak"; }) + (fetchNuGet { pname = "runtime.win-x64.Microsoft.DotNet.ILCompiler"; version = "7.0.15"; sha256 = "04dq9pljyqnd312y071z0bi3gspzrymyiq9paqvaa3xyprzdyxld"; }) ]; }; } diff --git a/pkgs/development/compilers/dotnet/versions/8.0.nix b/pkgs/development/compilers/dotnet/versions/8.0.nix index c283a86f94984..478a596e0be5d 100644 --- a/pkgs/development/compilers/dotnet/versions/8.0.nix +++ b/pkgs/development/compilers/dotnet/versions/8.0.nix @@ -3,176 +3,176 @@ # v8.0 (active) { aspnetcore_8_0 = buildAspNetCore { - version = "8.0.0"; + version = "8.0.1"; srcs = { x86_64-linux = { - url = "https://download.visualstudio.microsoft.com/download/pr/257bdcc7-cbfd-4680-964a-cbe8e9160bca/ac0cbf19d897ba51ae004b4146940a0a/aspnetcore-runtime-8.0.0-linux-x64.tar.gz"; - sha512 = "c0aa3a926d6c2bc0d4cc14f5d7677a4592111bf3ebefa65c5273c4b979a6e2b5d58305a5aaf4ac78f593b46605ec02f40b610dcbff070b1d8cf8ddc656cac7dc"; + url = "https://download.visualstudio.microsoft.com/download/pr/8e19b03a-93be-43ae-8cd6-95b89a849572/facbb896d726a2496dd23bcecb28c9e9/aspnetcore-runtime-8.0.1-linux-x64.tar.gz"; + sha512 = "64eecc0fc50f8c68205123355c43eae5ee29b7f6061a260315818960153fdf25f2bb25a51dd3f051e2362e228c032f2d0b9e7b6b476ac52141c17cfd8de0bfd2"; }; aarch64-linux = { - url = "https://download.visualstudio.microsoft.com/download/pr/91223e4e-2300-4e8e-9364-09ea1c317294/47fb26a2df5eeee08f77a4d1b720a34a/aspnetcore-runtime-8.0.0-linux-arm64.tar.gz"; - sha512 = "f9e1ae263dd944c70ea1818a3a44bb62aa5bfb65dafa463dc9f9a33bc8ad1c60b4e7a364a7414cc00a01ff707b5e88fc52c520edf0eb357ed1ddf4a8fcd8eae9"; + url = "https://download.visualstudio.microsoft.com/download/pr/0688a08e-fdaf-489b-90e4-033cc19cfffc/c9a9c648862b0b18c9aca77d3be0ef9f/aspnetcore-runtime-8.0.1-linux-arm64.tar.gz"; + sha512 = "7d34b6986363e54dca53828ca7a4d658aae1b24f8f33c6a82f811e12ce6d56698462db746d9f19e4ad245cc8d130a19930be28e0a0c2da2c96fd74b1cb2d8192"; }; x86_64-darwin = { - url = "https://download.visualstudio.microsoft.com/download/pr/6ef899a5-571a-4fd3-b294-65665d9cc76f/d21cc874f3832a5e0ad583d948d1f228/aspnetcore-runtime-8.0.0-osx-x64.tar.gz"; - sha512 = "1b19d90b631ebd74f6e1f4343ecf54f6f04bc8a2aceebbca66de57d41d440a66c7f56565043c1aaeb77b586dc349914d7d30b8c066197840430d543c24c87539"; + url = "https://download.visualstudio.microsoft.com/download/pr/6032140f-ed94-431d-94b3-afa360230225/eabd66a040f8a926694f78bf0f4a417e/aspnetcore-runtime-8.0.1-osx-x64.tar.gz"; + sha512 = "1a573a57d7eae9162976f915b065fcba8f4069e42f8aff4bb93b131fff16d9f54ce17d7a9392aeea27fd693c5d5932a94db8a8220ca34f481429824639a4819f"; }; aarch64-darwin = { - url = "https://download.visualstudio.microsoft.com/download/pr/0d05d563-f3ce-4d40-8cd8-f28247510533/48ed8322af7e47c2f68fc0afbd65e37b/aspnetcore-runtime-8.0.0-osx-arm64.tar.gz"; - sha512 = "0edb1bd0655d7898d9a02f7127e9a93af7e92e3ea324a7d77e9634b5dfa0851184d784f2573612b18bc37cb0510f93d1b0eaa2ae56b6ca99a16f1edafe6cf8fe"; + url = "https://download.visualstudio.microsoft.com/download/pr/73548990-4198-4c80-ac97-29ff5064cb11/da52a05fbc9a0cc6b997c14284753589/aspnetcore-runtime-8.0.1-osx-arm64.tar.gz"; + sha512 = "ac12b846bd8c65035087b9a77cc44edbbbdcc5f8b8b1b9cf47bc282b3505d3f8670188e1dbffebdc26233f7a5c35ae6b2c1dc61b26d7ffc3233117436399e46d"; }; }; }; runtime_8_0 = buildNetRuntime { - version = "8.0.0"; + version = "8.0.1"; srcs = { x86_64-linux = { - url = "https://download.visualstudio.microsoft.com/download/pr/fc4b4447-45f2-4fd2-899a-77eb1aed7792/6fd52c0c61f064ddc7fe7684e841f491/dotnet-runtime-8.0.0-linux-x64.tar.gz"; - sha512 = "16a93af328bcf61775875f4007c23081e2cb7aa8e2fba724aea6a61bc7ecf7466cc368121b08b58ac3b72f68cb67801c68c6505591eb35f18461db856bb08b37"; + url = "https://download.visualstudio.microsoft.com/download/pr/4d5166de-c1ac-45c5-bb8a-d47f8ee93ad9/ffab59440a3eb74359dd3009e4da5a81/dotnet-runtime-8.0.1-linux-x64.tar.gz"; + sha512 = "cbd03325280ff93cd0edab71c5564a50bb2423980f63d04602914db917c9c811a0068d848cab07d82e3260bff6684ad7cffacc2f449c06fc0b0aa8f845c399b6"; }; aarch64-linux = { - url = "https://download.visualstudio.microsoft.com/download/pr/c879318f-48f3-4cc4-8dcc-a6b77cfdfc38/7890f8a96ea335f5265cd1aa80cac8ce/dotnet-runtime-8.0.0-linux-arm64.tar.gz"; - sha512 = "bb39fed4cff3a1a0a4e5084a517feeacb571700b8114b83b0b040f63f279d32eb9195d9b94cd60f8aa969b84adaad51694a2e26255177a30f40f50f634d29c21"; + url = "https://download.visualstudio.microsoft.com/download/pr/39e79317-94d1-4e57-bb90-d5e004f4f3d4/cdcf3c0d8dc2560dcfcb160acb193785/dotnet-runtime-8.0.1-linux-arm64.tar.gz"; + sha512 = "29707882d4fce61eb4b20763473d548570f89f9d028bafb76b646911a5e7bf793dc75e33a6903622d7ba46e9eea0eac000d931cd2f45da118ef05fede6d4079b"; }; x86_64-darwin = { - url = "https://download.visualstudio.microsoft.com/download/pr/65e0ad28-b73d-46ab-b3ae-2d2ae4460b78/50ee103e816a255f9a5331bc2975a6ef/dotnet-runtime-8.0.0-osx-x64.tar.gz"; - sha512 = "a469d4fcbd756861045a2f639f42e7f7296fea3c5cb5bfbe75a9deefae2c5fa1fd658b35fe378e2a4afefcc37d8d874908833728481cc4b18fbd9f6f204d684d"; + url = "https://download.visualstudio.microsoft.com/download/pr/220d43f7-eb7f-470d-a80b-b30210adbbf2/dbfa691328557ee9888a1f38a29f72bd/dotnet-runtime-8.0.1-osx-x64.tar.gz"; + sha512 = "8c88db692cd889d8f4d6a1f0a82a3eb0b3f49a4771318127c294822f20ee83a87668c6a54012ad87242936d4412b3f8adc0448b8d5ff623f0a6faa3cfc544309"; }; aarch64-darwin = { - url = "https://download.visualstudio.microsoft.com/download/pr/65665fae-8f24-4214-89b5-980dbad7be30/1b70f4b76e076b4b656879426e861fbd/dotnet-runtime-8.0.0-osx-arm64.tar.gz"; - sha512 = "5464e6ca9afa89680b71042e200e99c43855a216cfef64ed2cc0b44efe547f7f69e57559ecdc47404e2a8c1c2b0f7d00ebcfc8b949750f0af168eb575e7dc092"; + url = "https://download.visualstudio.microsoft.com/download/pr/43ed6ef8-5265-462e-bbc4-2055a0f473e8/28d78788aeca160f615dcbd63c79b621/dotnet-runtime-8.0.1-osx-arm64.tar.gz"; + sha512 = "9d716e324c041ecd210ae65bcdd9bbf8c884d8fb92cda72d5bd13429581d47d7837d51f63c2994dfe17c5cda77de1c727308b590367d3181c91fa1f173c66b04"; }; }; }; sdk_8_0 = buildNetSdk { - version = "8.0.100"; + version = "8.0.101"; srcs = { x86_64-linux = { - url = "https://download.visualstudio.microsoft.com/download/pr/5226a5fa-8c0b-474f-b79a-8984ad7c5beb/3113ccbf789c9fd29972835f0f334b7a/dotnet-sdk-8.0.100-linux-x64.tar.gz"; - sha512 = "13905ea20191e70baeba50b0e9bbe5f752a7c34587878ee104744f9fb453bfe439994d38969722bdae7f60ee047d75dda8636f3ab62659450e9cd4024f38b2a5"; + url = 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version = "8.0.1"; sha256 = "1nl4bpr1ba2iqf2y1w3da2cynrwxdb1yghwgm8ix3sd72vmpwfxr"; }) + (fetchNuGet { pname = "runtime.linux-musl-x64.Microsoft.DotNet.ILCompiler"; version = "8.0.1"; sha256 = "08n4pnasxsd2qgq5izib8simzspcwsldcsbjgxjb9291ipzwsd3z"; }) + (fetchNuGet { pname = "runtime.linux-x64.Microsoft.DotNet.ILCompiler"; version = "8.0.1"; sha256 = "0mky32k6kv2iy14c89xbznyrr33ni616s85z40ny43j5w9scxh04"; }) + (fetchNuGet { pname = "runtime.osx-x64.Microsoft.DotNet.ILCompiler"; version = "8.0.1"; sha256 = "08x0vcpnhakaqifhg556dslr3s33mgplnxphhnm90dnfvyb6mqjq"; }) + (fetchNuGet { pname = "runtime.win-arm64.Microsoft.DotNet.ILCompiler"; version = "8.0.1"; sha256 = "1qf7ws0a5ny805pxmpzrp751p5p18h46r6lfi4p7h2rlw9p32ys0"; }) + (fetchNuGet { pname = "runtime.win-x64.Microsoft.DotNet.ILCompiler"; version = "8.0.1"; sha256 = "01h77hc9b5q8dhr19r3dxs1m76zhk9x4wz0wzkqz4j98p1g5bffa"; }) ]; }; } diff --git a/pkgs/development/compilers/erg/default.nix b/pkgs/development/compilers/erg/default.nix index e012957fb7a9c..5183a8712d2a9 100644 --- a/pkgs/development/compilers/erg/default.nix +++ b/pkgs/development/compilers/erg/default.nix @@ -9,16 +9,16 @@ rustPlatform.buildRustPackage rec { pname = "erg"; - version = "0.6.28"; + version = "0.6.29"; src = fetchFromGitHub { owner = "erg-lang"; repo = "erg"; rev = "v${version}"; - hash = "sha256-TK7Ak6ZKjEBcwimV0W/CgD3yd9q1aSgSkp9MuGE3d8k="; + hash = "sha256-sHW0e8a8ZDmcA8u0leIJLxzJLI8guKlMB/u7CFhbyQE="; }; - cargoHash = "sha256-DD6RXGdkQHMKZCJhHRTbTrRQ15MdOZHbREJ31LePHUY="; + cargoHash = "sha256-3wrH++IItJQNueJoa5wuzN2ZXWa5OflBItjQxS/XhO0="; nativeBuildInputs = [ makeWrapper diff --git a/pkgs/development/compilers/flutter/artifacts/fetch-artifacts.nix b/pkgs/development/compilers/flutter/artifacts/fetch-artifacts.nix index e0c1440a604fe..0e1ce6e678cba 100644 --- a/pkgs/development/compilers/flutter/artifacts/fetch-artifacts.nix +++ b/pkgs/development/compilers/flutter/artifacts/fetch-artifacts.nix @@ -1,16 +1,22 @@ +# Schema: +# ${flutterVersion}.${targetPlatform}.${hostPlatform} +# +# aarch64-darwin as a host is not yet supported. +# https://github.com/flutter/flutter/issues/60118 { lib , runCommand , xorg , cacert , unzip -, platform +, flutterPlatform +, systemPlatform , flutter , hash }: let - platforms = [ + flutterPlatforms = [ "android" "ios" "web" @@ -24,21 +30,34 @@ let flutter' = flutter.override { # Use a version of Flutter with just enough capabilities to download # artifacts. - supportedTargetPlatforms = [ ]; + supportedTargetFlutterPlatforms = [ ]; + + # Modify flutter-tool's system platform in order to get the desired platform's hashes. + flutter = flutter.unwrapped.override { + flutterTools = flutter.unwrapped.tools.override { + inherit systemPlatform; + }; + }; }; in -runCommand "flutter-artifacts-${platform}" +runCommand "flutter-artifacts-${flutterPlatform}-${systemPlatform}" { nativeBuildInputs = [ xorg.lndir flutter' unzip ]; NIX_FLUTTER_TOOLS_VM_OPTIONS = "--root-certs-file=${cacert}/etc/ssl/certs/ca-bundle.crt"; + NIX_FLUTTER_OPERATING_SYSTEM = { + "x86_64-linux" = "linux"; + "aarch64-linux" = "linux"; + "x86_64-darwin" = "macos"; + "aarch64-darwin" = "macos"; + }.${systemPlatform}; outputHash = hash; outputHashMode = "recursive"; outputHashAlgo = "sha256"; passthru = { - inherit platform; + inherit flutterPlatform; }; } '' export FLUTTER_ROOT="$NIX_BUILD_TOP" @@ -46,7 +65,7 @@ runCommand "flutter-artifacts-${platform}" rm -rf "$FLUTTER_ROOT/bin/cache" mkdir "$FLUTTER_ROOT/bin/cache" - HOME="$(mktemp -d)" flutter precache -v '--${platform}' ${builtins.concatStringsSep " " (map (p: "'--no-${p}'") (lib.remove platform platforms))} + HOME="$(mktemp -d)" flutter precache -v '--${flutterPlatform}' ${builtins.concatStringsSep " " (map (p: "'--no-${p}'") (lib.remove flutterPlatform flutterPlatforms))} rm -rf "$FLUTTER_ROOT/bin/cache/lockfile" find "$FLUTTER_ROOT" -type l -lname '${flutter'}/*' -delete diff --git a/pkgs/development/compilers/flutter/artifacts/hashes.nix b/pkgs/development/compilers/flutter/artifacts/hashes.nix deleted file mode 100644 index 551975acf6625..0000000000000 --- a/pkgs/development/compilers/flutter/artifacts/hashes.nix +++ /dev/null @@ -1,75 +0,0 @@ -# NOTICE: When updating these hashes, make sure that no additional platforms -# have been added to the `flutter precache` CLI. If any have, they may be -# included in every derivation, unless they are also added to the platform list -# in fetch-artifacts.nix. -# -# The known arguments are as follows: -# $ flutter precache --help --verbose -# Usage: flutter precache [arguments] -# -h, --help Print this usage information. -# -a, --all-platforms Precache artifacts for all host platforms. -# -f, --force Force re-downloading of artifacts. -# --[no-]android Precache artifacts for Android development. -# --[no-]android_gen_snapshot Precache gen_snapshot for Android development. -# --[no-]android_maven Precache Gradle dependencies for Android development. -# --[no-]android_internal_build Precache dependencies for internal Android development. -# --[no-]ios Precache artifacts for iOS development. -# --[no-]web Precache artifacts for web development. -# --[no-]linux Precache artifacts for Linux desktop development. -# --[no-]windows Precache artifacts for Windows desktop development. -# --[no-]macos Precache artifacts for macOS desktop development. -# --[no-]fuchsia Precache artifacts for Fuchsia development. -# --[no-]universal Precache artifacts required for any development platform. -# (defaults to on) -# --[no-]flutter_runner Precache the flutter runner artifacts. -# --[no-]use-unsigned-mac-binaries Precache the unsigned macOS binaries when available. - -# Schema: -# ${flutterVersion}.${targetPlatform}.${hostPlatform} -# -# aarch64-darwin as a host is not yet supported. -# https://github.com/flutter/flutter/issues/60118 -{ - "3.13.8" = { - android = { - x86_64-linux = "sha256-Uc36aBq8wQo2aEvjAPOoixZElWOE/GNRm2GUfhbwT3Y="; - aarch64-linux = "sha256-Uc36aBq8wQo2aEvjAPOoixZElWOE/GNRm2GUfhbwT3Y="; - x86_64-darwin = "sha256-v/6/GTj7732fEOIgSaoM00yaw2qNwOMuvbuoCvii7vQ="; - }; - fuchsia = { - x86_64-linux = "sha256-eu0BERdz53CkSexbpu3KA7O6Q4g0s9SGD3t1Snsk3Fk="; - aarch64-linux = "sha256-eu0BERdz53CkSexbpu3KA7O6Q4g0s9SGD3t1Snsk3Fk="; - x86_64-darwin = "sha256-eu0BERdz53CkSexbpu3KA7O6Q4g0s9SGD3t1Snsk3Fk="; - }; - ios = { - x86_64-linux = "sha256-QwkeGnutTVsm682CqxRtEd9rKUvN7zlAJcqkvAQYwao="; - aarch64-linux = "sha256-QwkeGnutTVsm682CqxRtEd9rKUvN7zlAJcqkvAQYwao="; - x86_64-darwin = "sha256-QwkeGnutTVsm682CqxRtEd9rKUvN7zlAJcqkvAQYwao="; - }; - linux = { - x86_64-linux = "sha256-0gIOwux3YBdmcXgwICr8dpftj1CauaBUX8Rt5GG0WSs="; - aarch64-linux = "sha256-drGHsuJoOCLqrhVrXczqJRCOtpeWVlqdWW0OSMS/l5M="; - x86_64-darwin = "sha256-0gIOwux3YBdmcXgwICr8dpftj1CauaBUX8Rt5GG0WSs="; - }; - macos = { - x86_64-linux = "sha256-9WqCJQ37mcGc5tzfqQoY5CqHWHGTizjXf9p73bdnNWc="; - aarch64-linux = "sha256-9WqCJQ37mcGc5tzfqQoY5CqHWHGTizjXf9p73bdnNWc="; - x86_64-darwin = "sha256-9WqCJQ37mcGc5tzfqQoY5CqHWHGTizjXf9p73bdnNWc="; - }; - universal = { - x86_64-linux = "sha256-wATt1UPjo/fh7RFO1vvcUAdo0dMAaaOUIuzYodsM0v0="; - aarch64-linux = "sha256-Z9bszNaIpCccG7OfvE5WFsw36dITiyCQAZ6p29+Yq68="; - x86_64-darwin = "sha256-qN5bAXRfQ78TWF3FLBIxWzUB5y5OrZVQTEilY5J/+2k="; - }; - web = { - x86_64-linux = "sha256-DVXJOOFxv7tKt3d0NaYMexkphEcr7+gDFV67I6iAYa0="; - aarch64-linux = "sha256-DVXJOOFxv7tKt3d0NaYMexkphEcr7+gDFV67I6iAYa0="; - x86_64-darwin = "sha256-DVXJOOFxv7tKt3d0NaYMexkphEcr7+gDFV67I6iAYa0="; - }; - windows = { - x86_64-linux = "sha256-s8fJtwQkuZaGXr6vrPiKfpwP/NfewbETwyp9ERGqHYI="; - aarch64-linux = "sha256-s8fJtwQkuZaGXr6vrPiKfpwP/NfewbETwyp9ERGqHYI="; - x86_64-darwin = "sha256-s8fJtwQkuZaGXr6vrPiKfpwP/NfewbETwyp9ERGqHYI="; - }; - }; -} diff --git a/pkgs/development/compilers/flutter/artifacts/prepare-artifacts.nix b/pkgs/development/compilers/flutter/artifacts/prepare-artifacts.nix index 9714d25c6f9b6..def75e280da77 100644 --- a/pkgs/development/compilers/flutter/artifacts/prepare-artifacts.nix +++ b/pkgs/development/compilers/flutter/artifacts/prepare-artifacts.nix @@ -20,7 +20,7 @@ runHook postInstall ''; }).overrideAttrs ( - if builtins.pathExists ./overrides/${src.platform}.nix - then callPackage ./overrides/${src.platform}.nix { } + if builtins.pathExists (./overrides + "/${src.flutterPlatform}.nix") + then callPackage (./overrides + "/${src.flutterPlatform}.nix") { } else ({ ... }: { }) ) diff --git a/pkgs/development/compilers/flutter/default.nix b/pkgs/development/compilers/flutter/default.nix index 382e9143810af..6d2d904660338 100644 --- a/pkgs/development/compilers/flutter/default.nix +++ b/pkgs/development/compilers/flutter/default.nix @@ -4,7 +4,7 @@ let wrapFlutter = flutter: callPackage ./wrapper.nix { inherit flutter; }; getPatches = dir: let files = builtins.attrNames (builtins.readDir dir); - in map (f: dir + ("/" + f)) files; + in if (builtins.pathExists dir) then map (f: dir + ("/" + f)) files else [ ]; mkFlutter = { version , engineVersion @@ -13,10 +13,11 @@ let , dartHash , patches , pubspecLock + , artifactHashes }: let args = { - inherit version engineVersion patches pubspecLock; + inherit version engineVersion patches pubspecLock artifactHashes; dart = dart.override { version = dartVersion; @@ -50,31 +51,22 @@ let (mkCustomFlutter args).overrideAttrs (prev: next: { passthru = next.passthru // rec { inherit wrapFlutter mkCustomFlutter mkFlutter; - buildFlutterApplication = callPackage ../../../build-support/flutter { - # Package a minimal version of Flutter that only uses Linux desktop release artifacts. - flutter = (wrapFlutter (mkCustomFlutter args)).override { - supportedTargetPlatforms = [ "universal" "linux" ]; - }; - }; + buildFlutterApplication = callPackage ../../../build-support/flutter { flutter = wrapFlutter (mkCustomFlutter args); }; }; }); - flutter3Patches = getPatches ./patches/flutter3; + flutterVersions = lib.mapAttrs' + (version: _: + let + versionDir = ./versions + "/${version}"; + data = lib.importJSON (versionDir + "/data.json"); + in + lib.nameValuePair "v${version}" (wrapFlutter (mkFlutter ({ + patches = (getPatches ./patches) ++ (getPatches (versionDir + "/patches")); + } // data)))) + (builtins.readDir ./versions); in -{ - inherit wrapFlutter; - stable = mkFlutter { - version = "3.13.8"; - engineVersion = "767d8c75e898091b925519803830fc2721658d07"; - dartVersion = "3.1.4"; - dartHash = { - x86_64-linux = "sha256-42wrqzjRcFDWw2aEY6+/faX+QE9PA8FmRWP4M/NkgBE="; - aarch64-linux = "sha256-/tWWWwTOgXHbwzotc7ZDDZa8+cbX6NODGYrjLK9gPPg="; - x86_64-darwin = "sha256-BchKowKd6BscVuk/dXibcQzdFkW9//GDfll77mHEI4M="; - aarch64-darwin = "sha256-9yrx09vYrOTmdqkfJI7mfh7DI1/rg67tPlf82m5+iKI="; - }; - flutterHash = "sha256-00G030FvZZTsdf9ruFs9jdIHcC5h+xpp4NlmL64qVZA="; - patches = flutter3Patches; - pubspecLock = lib.importJSON ./lockfiles/stable/pubspec.lock.json; - }; +flutterVersions // { + stable = flutterVersions.${lib.last (lib.naturalSort (builtins.attrNames flutterVersions))}; + inherit wrapFlutter mkFlutter; } diff --git a/pkgs/development/compilers/flutter/flutter-tools.nix b/pkgs/development/compilers/flutter/flutter-tools.nix index 4435c8fb6c760..55fee5630c16a 100644 --- a/pkgs/development/compilers/flutter/flutter-tools.nix +++ b/pkgs/development/compilers/flutter/flutter-tools.nix @@ -1,4 +1,4 @@ -{ hostPlatform +{ systemPlatform , buildDartApplication , git , which @@ -35,7 +35,7 @@ buildDartApplication.override { inherit dart; } rec { ''; dartEntryPoints."flutter_tools.snapshot" = "bin/flutter_tools.dart"; - dartCompileFlags = [ "--define=NIX_FLUTTER_HOST_PLATFORM=${hostPlatform.system}" ]; + dartCompileFlags = [ "--define=NIX_FLUTTER_HOST_PLATFORM=${systemPlatform}" ]; # The Dart wrapper launchers are useless for the Flutter tool - it is designed # to be launched from a snapshot by the SDK. diff --git a/pkgs/development/compilers/flutter/flutter.nix b/pkgs/development/compilers/flutter/flutter.nix index 1e68a3b02a9ee..42129501ca123 100644 --- a/pkgs/development/compilers/flutter/flutter.nix +++ b/pkgs/development/compilers/flutter/flutter.nix @@ -4,6 +4,7 @@ , dart , src , pubspecLock +, artifactHashes ? null , lib , stdenv , callPackage @@ -11,23 +12,24 @@ , darwin , git , which -}: - -let - tools = callPackage ./flutter-tools.nix { +, jq +, flutterTools ? callPackage ./flutter-tools.nix { inherit dart version; flutterSrc = src; inherit patches; inherit pubspecLock; - }; + systemPlatform = stdenv.hostPlatform.system; + } +}: +let unwrapped = stdenv.mkDerivation { name = "flutter-${version}-unwrapped"; inherit src patches version; buildInputs = [ git ]; - nativeBuildInputs = [ makeWrapper ] + nativeBuildInputs = [ makeWrapper jq ] ++ lib.optionals stdenv.hostPlatform.isDarwin [ darwin.DarwinTools ]; preConfigure = '' @@ -58,15 +60,28 @@ let # Add a flutter_tools artifact stamp, and build a snapshot. # This is the Flutter CLI application. echo "$(git rev-parse HEAD)" > bin/cache/flutter_tools.stamp - ln -s '${tools}/share/flutter_tools.snapshot' bin/cache/flutter_tools.snapshot + ln -s '${flutterTools}/share/flutter_tools.snapshot' bin/cache/flutter_tools.snapshot # Some of flutter_tools's dependencies contain static assets. The # application attempts to read its own package_config.json to find these # assets at runtime. mkdir -p packages/flutter_tools/.dart_tool - ln -s '${tools.pubcache}/package_config.json' packages/flutter_tools/.dart_tool/package_config.json + ln -s '${flutterTools.pubcache}/package_config.json' packages/flutter_tools/.dart_tool/package_config.json echo -n "${version}" > version + cat <<EOF > bin/cache/flutter.version.json + { + "devToolsVersion": "$(cat "${dart}/bin/resources/devtools/version.json" | jq -r .version)", + "flutterVersion": "${version}", + "frameworkVersion": "${version}", + "channel": "stable", + "repositoryUrl": "https://github.com/flutter/flutter.git", + "frameworkRevision": "nixpkgs000000000000000000000000000000000", + "frameworkCommitDate": "1970-01-01 00:00:00", + "engineRevision": "${engineVersion}", + "dartSdkVersion": "${dart.version}" + } + EOF ''; installPhase = '' @@ -105,7 +120,8 @@ let ''; passthru = { - inherit dart engineVersion tools; + inherit dart engineVersion artifactHashes; + tools = flutterTools; # The derivation containing the original Flutter SDK files. # When other derivations wrap this one, any unmodified files # found here should be included as-is, for tooling compatibility. diff --git a/pkgs/development/compilers/flutter/lockfiles/stable/pubspec.lock.json b/pkgs/development/compilers/flutter/lockfiles/stable/pubspec.lock.json deleted file mode 100644 index 517092d8ee4e1..0000000000000 --- a/pkgs/development/compilers/flutter/lockfiles/stable/pubspec.lock.json +++ /dev/null @@ -1,847 +0,0 @@ -{ - "packages": { - "_fe_analyzer_shared": { - "dependency": "direct main", - "description": { - "name": "_fe_analyzer_shared", - "sha256": "ae92f5d747aee634b87f89d9946000c2de774be1d6ac3e58268224348cd0101a", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "61.0.0" - }, - "analyzer": { - "dependency": "direct main", - "description": { - "name": "analyzer", - "sha256": "ea3d8652bda62982addfd92fdc2d0214e5f82e43325104990d4f4c4a2a313562", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "5.13.0" - }, - "archive": { - "dependency": "direct main", - "description": { - "name": "archive", - "sha256": "80e5141fafcb3361653ce308776cfd7d45e6e9fbb429e14eec571382c0c5fecb", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "3.3.2" - }, - "args": { - "dependency": "direct main", - "description": { - "name": "args", - "sha256": "eef6c46b622e0494a36c5a12d10d77fb4e855501a91c1b9ef9339326e58f0596", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "2.4.2" - }, - "async": { - "dependency": "direct main", - "description": { - "name": "async", - "sha256": "947bfcf187f74dbc5e146c9eb9c0f10c9f8b30743e341481c1e2ed3ecc18c20c", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "2.11.0" - }, - "boolean_selector": { - "dependency": "direct main", - "description": { - "name": "boolean_selector", - "sha256": "6cfb5af12253eaf2b368f07bacc5a80d1301a071c73360d746b7f2e32d762c66", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "2.1.1" - }, - "browser_launcher": { - "dependency": "direct main", - "description": { - "name": "browser_launcher", - "sha256": "6ee4c6b1f68a42e769ef6e663c4f56708522f7bce9d2ab6e308a37b612ffa4ec", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "1.1.1" - }, - "built_collection": { - "dependency": "direct main", - "description": { - "name": "built_collection", - "sha256": "376e3dd27b51ea877c28d525560790aee2e6fbb5f20e2f85d5081027d94e2100", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "5.1.1" - }, - "built_value": { - "dependency": "direct main", - "description": { - "name": "built_value", - "sha256": "598a2a682e2a7a90f08ba39c0aaa9374c5112340f0a2e275f61b59389543d166", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "8.6.1" - }, - "checked_yaml": { - "dependency": "direct dev", - "description": { - "name": "checked_yaml", - "sha256": "feb6bed21949061731a7a75fc5d2aa727cf160b91af9a3e464c5e3a32e28b5ff", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "2.0.3" - }, - "clock": { - "dependency": "direct main", - "description": { - "name": "clock", - "sha256": "cb6d7f03e1de671e34607e909a7213e31d7752be4fb66a86d29fe1eb14bfb5cf", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "1.1.1" - }, - "collection": { - "dependency": "direct dev", - "description": { - "name": "collection", - "sha256": "f092b211a4319e98e5ff58223576de6c2803db36221657b46c82574721240687", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "1.17.2" - }, - "completion": { - "dependency": "direct main", - "description": { - "name": "completion", - "sha256": "f11b7a628e6c42b9edc9b0bc3aa490e2d930397546d2f794e8e1325909d11c60", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "1.0.1" - }, - "convert": { - "dependency": "direct main", - "description": { - "name": "convert", - "sha256": "0f08b14755d163f6e2134cb58222dd25ea2a2ee8a195e53983d57c075324d592", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "3.1.1" - }, - "coverage": { - "dependency": "direct main", - "description": { - "name": "coverage", - "sha256": "2fb815080e44a09b85e0f2ca8a820b15053982b2e714b59267719e8a9ff17097", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "1.6.3" - }, - "crypto": { - "dependency": "direct main", - "description": { - "name": "crypto", - "sha256": "ff625774173754681d66daaf4a448684fb04b78f902da9cb3d308c19cc5e8bab", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "3.0.3" - }, - "csslib": { - "dependency": "direct main", - "description": { - "name": "csslib", - "sha256": "706b5707578e0c1b4b7550f64078f0a0f19dec3f50a178ffae7006b0a9ca58fb", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "1.0.0" - }, - "dap": { - "dependency": "direct main", - "description": { - "name": "dap", - "sha256": "2120d4a8cbad45e5dbd518b713e8f064274e0a4c0e3edcaef1f4cf9ccbc90cd9", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "1.0.0" - }, - "dds": { - "dependency": "direct main", - "description": { - "name": "dds", - "sha256": "397c3c80919ee187b2efc28205af3c0378b6b757ea6d059083dece145a2e31e9", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "2.9.0+hotfix" - }, - "dds_service_extensions": { - "dependency": "direct main", - "description": { - "name": "dds_service_extensions", - "sha256": "9ac669bef49a4c13ed62073685089be121200fb213800ec59c202e90d569ea44", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "1.5.0" - }, - "devtools_shared": { - "dependency": "direct main", - "description": { - "name": "devtools_shared", - "sha256": "ad58ac3a5df41adf08d0d6f0a4d73349533edcc383ee93a30ac3d0fd0bb6df49", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "2.24.0" - }, - "dwds": { - "dependency": "direct main", - "description": { - "name": "dwds", - "sha256": "b6dad73ae56f00bff7647f531b9db018005f713328e816e7a277b544184e9170", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "19.0.1+1" - }, - "fake_async": { - "dependency": "direct main", - "description": { - "name": "fake_async", - "sha256": "511392330127add0b769b75a987850d136345d9227c6b94c96a04cf4a391bf78", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "1.3.1" - }, - "file": { - "dependency": "direct main", - "description": { - "name": "file", - "sha256": "1b92bec4fc2a72f59a8e15af5f52cd441e4a7860b49499d69dfa817af20e925d", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "6.1.4" - }, - "file_testing": { - "dependency": "direct dev", - "description": { - "name": "file_testing", - "sha256": "0aaadb4025bd350403f4308ad6c4cea953278d9407814b8342558e4946840fb5", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "3.0.0" - }, - "fixnum": { - "dependency": "direct main", - "description": { - "name": "fixnum", - "sha256": "25517a4deb0c03aa0f32fd12db525856438902d9c16536311e76cdc57b31d7d1", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "1.1.0" - }, - "flutter_template_images": { - "dependency": "direct main", - "description": { - "name": "flutter_template_images", - "sha256": "fd3e55af73c577b9e3f88d4080d3e366cb5c8ef3fbd50b94dfeca56bb0235df6", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "4.2.0" - }, - "frontend_server_client": { - "dependency": "direct main", - "description": { - "name": "frontend_server_client", - "sha256": "408e3ca148b31c20282ad6f37ebfa6f4bdc8fede5b74bc2f08d9d92b55db3612", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "3.2.0" - }, - "glob": { - "dependency": "direct main", - "description": { - "name": "glob", - "sha256": "0e7014b3b7d4dac1ca4d6114f82bf1782ee86745b9b42a92c9289c23d8a0ab63", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "2.1.2" - }, - "html": { - "dependency": "direct main", - "description": { - "name": "html", - "sha256": "3a7812d5bcd2894edf53dfaf8cd640876cf6cef50a8f238745c8b8120ea74d3a", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "0.15.4" - }, - "http": { - "dependency": "direct main", - "description": { - "name": "http", - "sha256": "5895291c13fa8a3bd82e76d5627f69e0d85ca6a30dcac95c4ea19a5d555879c2", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "0.13.6" - }, - "http_multi_server": { - "dependency": "direct main", - "description": { - "name": "http_multi_server", - "sha256": "97486f20f9c2f7be8f514851703d0119c3596d14ea63227af6f7a481ef2b2f8b", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "3.2.1" - }, - "http_parser": { - "dependency": "direct main", - "description": { - "name": "http_parser", - "sha256": "2aa08ce0341cc9b354a498388e30986515406668dbcc4f7c950c3e715496693b", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "4.0.2" - }, - "intl": { - "dependency": "direct main", - "description": { - "name": "intl", - "sha256": "3bc132a9dbce73a7e4a21a17d06e1878839ffbf975568bc875c60537824b0c4d", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "0.18.1" - }, - "io": { - "dependency": "direct main", - "description": { - "name": "io", - "sha256": "2ec25704aba361659e10e3e5f5d672068d332fc8ac516421d483a11e5cbd061e", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "1.0.4" - }, - "js": { - "dependency": "direct main", - "description": { - "name": "js", - "sha256": "f2c445dce49627136094980615a031419f7f3eb393237e4ecd97ac15dea343f3", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "0.6.7" - }, - "json_annotation": { - "dependency": "direct dev", - "description": { - "name": "json_annotation", - "sha256": "b10a7b2ff83d83c777edba3c6a0f97045ddadd56c944e1a23a3fdf43a1bf4467", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "4.8.1" - }, - "json_rpc_2": { - "dependency": "direct main", - "description": { - "name": "json_rpc_2", - "sha256": "5e469bffa23899edacb7b22787780068d650b106a21c76db3c49218ab7ca447e", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "3.0.2" - }, - "logging": { - "dependency": "direct main", - "description": { - "name": "logging", - "sha256": "623a88c9594aa774443aa3eb2d41807a48486b5613e67599fb4c41c0ad47c340", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "1.2.0" - }, - "matcher": { - "dependency": "direct main", - "description": { - "name": "matcher", - "sha256": "1803e76e6653768d64ed8ff2e1e67bea3ad4b923eb5c56a295c3e634bad5960e", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "0.12.16" - }, - "meta": { - "dependency": "direct main", - "description": { - "name": "meta", - "sha256": "3c74dbf8763d36539f114c799d8a2d87343b5067e9d796ca22b5eb8437090ee3", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "1.9.1" - }, - "mime": { - "dependency": "direct main", - "description": { - "name": "mime", - "sha256": "e4ff8e8564c03f255408decd16e7899da1733852a9110a58fe6d1b817684a63e", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "1.0.4" - }, - "multicast_dns": { - "dependency": "direct main", - "description": { - "name": "multicast_dns", - "sha256": "80e54aba906a7cc68fdc6a201e76b135af27155e2f8e958181d85e2b73786591", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "0.3.2+3" - }, - "mustache_template": { - "dependency": "direct main", - "description": { - "name": "mustache_template", - "sha256": "a46e26f91445bfb0b60519be280555b06792460b27b19e2b19ad5b9740df5d1c", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "2.0.0" - }, - "native_stack_traces": { - "dependency": "direct main", - "description": { - "name": "native_stack_traces", - "sha256": "c797830b9910d13b0f4e70ddef15cde034214fe3bdb8092c4ea5ffad2f74013f", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "0.5.6" - }, - "node_preamble": { - "dependency": "direct dev", - "description": { - "name": "node_preamble", - "sha256": "6e7eac89047ab8a8d26cf16127b5ed26de65209847630400f9aefd7cd5c730db", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "2.0.2" - }, - "package_config": { - "dependency": "direct main", - "description": { - "name": "package_config", - "sha256": "1c5b77ccc91e4823a5af61ee74e6b972db1ef98c2ff5a18d3161c982a55448bd", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "2.1.0" - }, - "path": { - "dependency": "direct main", - "description": { - "name": "path", - "sha256": "8829d8a55c13fc0e37127c29fedf290c102f4e40ae94ada574091fe0ff96c917", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "1.8.3" - }, - "petitparser": { - "dependency": "direct main", - "description": { - "name": "petitparser", - "sha256": "cb3798bef7fc021ac45b308f4b51208a152792445cce0448c9a4ba5879dd8750", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "5.4.0" - }, - "platform": { - "dependency": "direct main", - "description": { - "name": "platform", - "sha256": "4a451831508d7d6ca779f7ac6e212b4023dd5a7d08a27a63da33756410e32b76", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "3.1.0" - }, - "pool": { - "dependency": "direct main", - "description": { - "name": "pool", - "sha256": "20fe868b6314b322ea036ba325e6fc0711a22948856475e2c2b6306e8ab39c2a", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "1.5.1" - }, - "process": { - "dependency": "direct main", - "description": { - "name": "process", - "sha256": "53fd8db9cec1d37b0574e12f07520d582019cb6c44abf5479a01505099a34a09", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "4.2.4" - }, - "pub_semver": { - "dependency": "direct main", - "description": { - "name": "pub_semver", - "sha256": "40d3ab1bbd474c4c2328c91e3a7df8c6dd629b79ece4c4bd04bee496a224fb0c", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "2.1.4" - }, - "pubspec_parse": { - "dependency": "direct dev", - "description": { - "name": "pubspec_parse", - "sha256": "c63b2876e58e194e4b0828fcb080ad0e06d051cb607a6be51a9e084f47cb9367", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "1.2.3" - }, - "shelf": { - "dependency": "direct main", - "description": { - "name": "shelf", - "sha256": "ad29c505aee705f41a4d8963641f91ac4cee3c8fad5947e033390a7bd8180fa4", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "1.4.1" - }, - "shelf_packages_handler": { - "dependency": "direct main", - "description": { - "name": "shelf_packages_handler", - "sha256": "89f967eca29607c933ba9571d838be31d67f53f6e4ee15147d5dc2934fee1b1e", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "3.0.2" - }, - "shelf_proxy": { - "dependency": "direct main", - "description": { - "name": "shelf_proxy", - "sha256": "a71d2307f4393211930c590c3d2c00630f6c5a7a77edc1ef6436dfd85a6a7ee3", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "1.0.4" - }, - "shelf_static": { - "dependency": "direct main", - "description": { - "name": "shelf_static", - "sha256": "a41d3f53c4adf0f57480578c1d61d90342cd617de7fc8077b1304643c2d85c1e", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "1.1.2" - }, - "shelf_web_socket": { - "dependency": "direct main", - "description": { - "name": "shelf_web_socket", - "sha256": "9ca081be41c60190ebcb4766b2486a7d50261db7bd0f5d9615f2d653637a84c1", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "1.0.4" - }, - "source_map_stack_trace": { - "dependency": "direct main", - "description": { - "name": "source_map_stack_trace", - "sha256": "84cf769ad83aa6bb61e0aa5a18e53aea683395f196a6f39c4c881fb90ed4f7ae", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "2.1.1" - }, - "source_maps": { - "dependency": "direct main", - "description": { - "name": "source_maps", - "sha256": "708b3f6b97248e5781f493b765c3337db11c5d2c81c3094f10904bfa8004c703", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "0.10.12" - }, - "source_span": { - "dependency": "direct main", - "description": { - "name": "source_span", - "sha256": "53e943d4206a5e30df338fd4c6e7a077e02254531b138a15aec3bd143c1a8b3c", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "1.10.0" - }, - "sse": { - "dependency": "direct main", - "description": { - "name": "sse", - "sha256": "3ff9088cac3f45aa8b91336f1962e3ea6c81baaba0bbba361c05f8aa7fb59442", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "4.1.2" - }, - "stack_trace": { - "dependency": "direct main", - "description": { - "name": "stack_trace", - "sha256": "c3c7d8edb15bee7f0f74debd4b9c5f3c2ea86766fe4178eb2a18eb30a0bdaed5", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "1.11.0" - }, - "standard_message_codec": { - "dependency": "direct main", - "description": { - "name": "standard_message_codec", - "sha256": "906e66549f0ea90d87c5320e0b0f04738c5d14bc7fb121a15da31b60e84f5b15", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "0.0.1+3" - }, - "stream_channel": { - "dependency": "direct main", - "description": { - "name": "stream_channel", - "sha256": "83615bee9045c1d322bbbd1ba209b7a749c2cbcdcb3fdd1df8eb488b3279c1c8", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "2.1.1" - }, - "string_scanner": { - "dependency": "direct main", - "description": { - "name": "string_scanner", - "sha256": "556692adab6cfa87322a115640c11f13cb77b3f076ddcc5d6ae3c20242bedcde", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "1.2.0" - }, - "sync_http": { - "dependency": "direct main", - "description": { - "name": "sync_http", - "sha256": "7f0cd72eca000d2e026bcd6f990b81d0ca06022ef4e32fb257b30d3d1014a961", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "0.3.1" - }, - "term_glyph": { - "dependency": "direct main", - "description": { - "name": "term_glyph", - "sha256": "a29248a84fbb7c79282b40b8c72a1209db169a2e0542bce341da992fe1bc7e84", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "1.2.1" - }, - "test": { - "dependency": "direct dev", - "description": { - "name": "test", - "sha256": "13b41f318e2a5751c3169137103b60c584297353d4b1761b66029bae6411fe46", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "1.24.3" - }, - "test_api": { - "dependency": "direct main", - "description": { - "name": "test_api", - "sha256": "75760ffd7786fffdfb9597c35c5b27eaeec82be8edfb6d71d32651128ed7aab8", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "0.6.0" - }, - "test_core": { - "dependency": "direct main", - "description": { - "name": "test_core", - "sha256": "99806e9e6d95c7b059b7a0fc08f07fc53fabe54a829497f0d9676299f1e8637e", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "0.5.3" - }, - "typed_data": { - "dependency": "direct main", - "description": { - "name": "typed_data", - "sha256": "facc8d6582f16042dd49f2463ff1bd6e2c9ef9f3d5da3d9b087e244a7b564b3c", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "1.3.2" - }, - "unified_analytics": { - "dependency": "direct main", - "description": { - "name": "unified_analytics", - "sha256": "4f9f29e5fd357d68fce270e37c7ad9bb489ee20098529199d6bc786b2b624298", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "2.0.0" - }, - "usage": { - "dependency": "direct main", - "description": { - "name": "usage", - "sha256": "0bdbde65a6e710343d02a56552eeaefd20b735e04bfb6b3ee025b6b22e8d0e15", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "4.1.1" - }, - "uuid": { - "dependency": "direct main", - "description": { - "name": "uuid", - "sha256": "648e103079f7c64a36dc7d39369cabb358d377078a051d6ae2ad3aa539519313", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "3.0.7" - }, - "vm_service": { - "dependency": "direct main", - "description": { - "name": "vm_service", - "sha256": "c620a6f783fa22436da68e42db7ebbf18b8c44b9a46ab911f666ff09ffd9153f", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "11.7.1" - }, - "vm_snapshot_analysis": { - "dependency": "direct main", - "description": { - "name": "vm_snapshot_analysis", - "sha256": "5a79b9fbb6be2555090f55b03b23907e75d44c3fd7bdd88da09848aa5a1914c8", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "0.7.6" - }, - "watcher": { - "dependency": "direct main", - "description": { - "name": "watcher", - "sha256": "3d2ad6751b3c16cf07c7fca317a1413b3f26530319181b37e3b9039b84fc01d8", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "1.1.0" - }, - "web_socket_channel": { - "dependency": "direct main", - "description": { - "name": "web_socket_channel", - "sha256": "d88238e5eac9a42bb43ca4e721edba3c08c6354d4a53063afaa568516217621b", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "2.4.0" - }, - "webdriver": { - "dependency": "direct main", - "description": { - "name": "webdriver", - "sha256": "3c923e918918feeb90c4c9fdf1fe39220fa4c0e8e2c0fffaded174498ef86c49", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "3.0.2" - }, - "webkit_inspection_protocol": { - "dependency": "direct main", - "description": { - "name": "webkit_inspection_protocol", - "sha256": "67d3a8b6c79e1987d19d848b0892e582dbb0c66c57cc1fef58a177dd2aa2823d", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "1.2.0" - }, - "xml": { - "dependency": "direct main", - "description": { - "name": "xml", - "sha256": "5bc72e1e45e941d825fd7468b9b4cc3b9327942649aeb6fc5cdbf135f0a86e84", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "6.3.0" - }, - "yaml": { - "dependency": "direct main", - "description": { - "name": "yaml", - "sha256": "75769501ea3489fca56601ff33454fe45507ea3bfb014161abc3b43ae25989d5", - "url": "https://pub.dev" - }, - "source": "hosted", - "version": "3.1.2" - } - }, - "sdks": { - "dart": ">=3.0.0 <4.0.0" - } -} diff --git a/pkgs/development/compilers/flutter/patches/flutter3/copy-without-perms.patch b/pkgs/development/compilers/flutter/patches/copy-without-perms.patch index 281b3840891fb..281b3840891fb 100644 --- a/pkgs/development/compilers/flutter/patches/flutter3/copy-without-perms.patch +++ b/pkgs/development/compilers/flutter/patches/copy-without-perms.patch diff --git a/pkgs/development/compilers/flutter/patches/flutter3/deregister-pub-dependencies-artifact.patch b/pkgs/development/compilers/flutter/patches/deregister-pub-dependencies-artifact.patch index 01e34c6d292c9..01e34c6d292c9 100644 --- a/pkgs/development/compilers/flutter/patches/flutter3/deregister-pub-dependencies-artifact.patch +++ b/pkgs/development/compilers/flutter/patches/deregister-pub-dependencies-artifact.patch diff --git a/pkgs/development/compilers/flutter/patches/flutter3/disable-auto-update.patch b/pkgs/development/compilers/flutter/patches/disable-auto-update.patch index 23a657e7c6a9e..05960c01b7379 100644 --- a/pkgs/development/compilers/flutter/patches/flutter3/disable-auto-update.patch +++ b/pkgs/development/compilers/flutter/patches/disable-auto-update.patch @@ -1,16 +1,3 @@ -diff --git a/bin/internal/shared.sh b/bin/internal/shared.sh -index 3532c23114..25dfcae4c7 100644 ---- a/bin/internal/shared.sh -+++ b/bin/internal/shared.sh -@@ -229,8 +229,6 @@ function shared::execute() { - exit 1 - fi - -- upgrade_flutter 7< "$PROG_NAME" -- - BIN_NAME="$(basename "$PROG_NAME")" - case "$BIN_NAME" in - flutter*) diff --git a/packages/flutter_tools/lib/src/runner/flutter_command.dart b/packages/flutter_tools/lib/src/runner/flutter_command.dart index b7e624b4e2..edfdde118b 100644 --- a/packages/flutter_tools/lib/src/runner/flutter_command.dart diff --git a/pkgs/development/compilers/flutter/patches/flutter3/dont-validate-executable-location.patch b/pkgs/development/compilers/flutter/patches/dont-validate-executable-location.patch index 5f391265ce153..5f391265ce153 100644 --- a/pkgs/development/compilers/flutter/patches/flutter3/dont-validate-executable-location.patch +++ b/pkgs/development/compilers/flutter/patches/dont-validate-executable-location.patch diff --git a/pkgs/development/compilers/flutter/patches/flutter3/flutter-pub-dart-override.patch b/pkgs/development/compilers/flutter/patches/flutter-pub-dart-override.patch index 9d1de65c320da..9d1de65c320da 100644 --- a/pkgs/development/compilers/flutter/patches/flutter3/flutter-pub-dart-override.patch +++ b/pkgs/development/compilers/flutter/patches/flutter-pub-dart-override.patch diff --git a/pkgs/development/compilers/flutter/patches/flutter3/git-dir.patch b/pkgs/development/compilers/flutter/patches/git-dir.patch index 6e6ae4e6fb98c..6e6ae4e6fb98c 100644 --- a/pkgs/development/compilers/flutter/patches/flutter3/git-dir.patch +++ b/pkgs/development/compilers/flutter/patches/git-dir.patch diff --git a/pkgs/development/compilers/flutter/patches/flutter3/override-host-platform.patch b/pkgs/development/compilers/flutter/patches/override-host-platform.patch index 51dcfdb5cc57d..51dcfdb5cc57d 100644 --- a/pkgs/development/compilers/flutter/patches/flutter3/override-host-platform.patch +++ b/pkgs/development/compilers/flutter/patches/override-host-platform.patch diff --git a/pkgs/development/compilers/flutter/patches/override-operating-system.patch b/pkgs/development/compilers/flutter/patches/override-operating-system.patch new file mode 100644 index 0000000000000..07d57175bd9ac --- /dev/null +++ b/pkgs/development/compilers/flutter/patches/override-operating-system.patch @@ -0,0 +1,13 @@ +diff --git a/packages/flutter_tools/lib/src/base/platform.dart b/packages/flutter_tools/lib/src/base/platform.dart +index 45da89ad4c..2d79dbaece 100644 +--- a/packages/flutter_tools/lib/src/base/platform.dart ++++ b/packages/flutter_tools/lib/src/base/platform.dart +@@ -132,7 +132,7 @@ class LocalPlatform extends Platform { + String get pathSeparator => io.Platform.pathSeparator; + + @override +- String get operatingSystem => io.Platform.operatingSystem; ++ String get operatingSystem => io.Platform.environment['NIX_FLUTTER_OPERATING_SYSTEM'] ?? io.Platform.operatingSystem; + + @override + String get operatingSystemVersion => io.Platform.operatingSystemVersion; diff --git a/pkgs/development/compilers/flutter/update/get-artifact-hashes.nix.in b/pkgs/development/compilers/flutter/update/get-artifact-hashes.nix.in new file mode 100644 index 0000000000000..069bcdb95718e --- /dev/null +++ b/pkgs/development/compilers/flutter/update/get-artifact-hashes.nix.in @@ -0,0 +1,48 @@ +{ callPackage +, flutterPackages +, lib +, symlinkJoin +, +}: +let + nixpkgsRoot = "@nixpkgs_root@"; + flutterCompactVersion = "@flutter_compact_version@"; + + flutterPlatforms = [ + "android" + "ios" + "web" + "linux" + "windows" + "macos" + "fuchsia" + "universal" + ]; + systemPlatforms = [ + "x86_64-linux" + "aarch64-linux" + "x86_64-darwin" + ]; + + derivations = + lib.foldl' + ( + acc: flutterPlatform: + acc + ++ (map + (systemPlatform: + callPackage "${nixpkgsRoot}/pkgs/development/compilers/flutter/artifacts/fetch-artifacts.nix" { + flutter = flutterPackages."v${flutterCompactVersion}"; + inherit flutterPlatform; + inherit systemPlatform; + hash = lib.fakeSha256; + }) + systemPlatforms) + ) [ ] + flutterPlatforms; +in +symlinkJoin { + name = "evaluate-derivations"; + paths = derivations; +} + diff --git a/pkgs/development/compilers/flutter/update/get-dart-hashes.nix.in b/pkgs/development/compilers/flutter/update/get-dart-hashes.nix.in new file mode 100644 index 0000000000000..f900c863195ab --- /dev/null +++ b/pkgs/development/compilers/flutter/update/get-dart-hashes.nix.in @@ -0,0 +1,26 @@ +let + dartVersion = "@dart_version@"; + platform = "@platform@"; +in +{ + x86_64-linux = { fetchzip }: + fetchzip { + url = "https://storage.googleapis.com/dart-archive/channels/stable/release/${dartVersion}/sdk/dartsdk-linux-x64-release.zip"; + sha256 = "0000000000000000000000000000000000000000000000000000"; + }; + aarch64-linux = { fetchzip }: + fetchzip { + url = "https://storage.googleapis.com/dart-archive/channels/stable/release/${dartVersion}/sdk/dartsdk-linux-arm64-release.zip"; + sha256 = "0000000000000000000000000000000000000000000000000000"; + }; + x86_64-darwin = { fetchzip }: + fetchzip { + url = "https://storage.googleapis.com/dart-archive/channels/stable/release/${dartVersion}/sdk/dartsdk-macos-x64-release.zip"; + sha256 = "0000000000000000000000000000000000000000000000000000"; + }; + aarch64-darwin = { fetchzip }: + fetchzip { + url = "https://storage.googleapis.com/dart-archive/channels/stable/release/${dartVersion}/sdk/dartsdk-macos-arm64-release.zip"; + sha256 = "0000000000000000000000000000000000000000000000000000"; + }; +}.${platform} diff --git a/pkgs/development/compilers/flutter/update/get-flutter.nix.in b/pkgs/development/compilers/flutter/update/get-flutter.nix.in new file mode 100644 index 0000000000000..81680797229b6 --- /dev/null +++ b/pkgs/development/compilers/flutter/update/get-flutter.nix.in @@ -0,0 +1,7 @@ +{ fetchFromGitHub }: +fetchFromGitHub { + owner = "flutter"; + repo = "flutter"; + rev = "@flutter_version@"; + hash = "@hash@"; +} diff --git a/pkgs/development/compilers/flutter/update/get-pubspec-lock.nix.in b/pkgs/development/compilers/flutter/update/get-pubspec-lock.nix.in new file mode 100644 index 0000000000000..ff72046bcecb1 --- /dev/null +++ b/pkgs/development/compilers/flutter/update/get-pubspec-lock.nix.in @@ -0,0 +1,30 @@ +{ flutterPackages +, stdenv +, cacert +, +}: +let + flutterCompactVersion = "@flutter_compact_version@"; + inherit (flutterPackages."v${flutterCompactVersion}") dart; +in +stdenv.mkDerivation { + name = "pubspec-lock"; + src = @flutter_src@; + + nativeBuildInputs = [ dart ]; + + outputHashAlgo = "sha256"; + outputHashMode = "recursive"; + outputHash = "@hash@"; + + buildPhase = '' + cd ./packages/flutter_tools + + export HOME="$(mktemp -d)" + dart --root-certs-file=${cacert}/etc/ssl/certs/ca-bundle.crt pub get -v + ''; + + installPhase = '' + cp -r ./pubspec.lock $out + ''; +} diff --git a/pkgs/development/compilers/flutter/update/update.py b/pkgs/development/compilers/flutter/update/update.py new file mode 100755 index 0000000000000..618fae5468e5b --- /dev/null +++ b/pkgs/development/compilers/flutter/update/update.py @@ -0,0 +1,339 @@ +#! /usr/bin/env nix-shell +#! nix-shell -i python3 -p python3Packages.pyyaml + +import shutil +import json +import urllib.request +import tempfile +from sys import exit +import os +import subprocess +import re +import json +import argparse +import yaml +import json + + +NIXPKGS_ROOT = subprocess.Popen(['git', + 'rev-parse', + '--show-toplevel'], + stdout=subprocess.PIPE, + text=True).communicate()[0].strip() + + +def load_code(name, **kwargs): + with open(f"{NIXPKGS_ROOT}/pkgs/development/compilers/flutter/update/{name}.in", 'r') as f: + code = f.read() + + for (key, value) in kwargs.items(): + code = code.replace(f"@{key}@", value) + + return code + + +# Return out paths +def nix_build(code): + temp = tempfile.NamedTemporaryFile(mode='w') + temp.write(code) + temp.flush() + os.fsync(temp.fileno()) + + process = subprocess.Popen( + [ + "nix-build", + "--impure", + "--no-out-link", + "--expr", + f"with import {NIXPKGS_ROOT} {{}}; callPackage {temp.name} {{}}"], + stdout=subprocess.PIPE, + text=True) + + process.wait() + temp.close() + return process.stdout.read().strip().splitlines()[0] + + +# Return errors +def nix_build_to_fail(code): + temp = tempfile.NamedTemporaryFile(mode='w') + temp.write(code) + temp.flush() + os.fsync(temp.fileno()) + + process = subprocess.Popen( + [ + "nix-build", + "--impure", + "--keep-going", + "--no-link", + "--expr", + f"with import {NIXPKGS_ROOT} {{}}; callPackage {temp.name} {{}}"], + stderr=subprocess.PIPE, + text=True) + + stderr = "" + while True: + line = process.stderr.readline() + if not line: + break + stderr += line + print(line.strip()) + + process.wait() + temp.close() + return stderr + + +def get_artifact_hashes(flutter_compact_version): + code = load_code("get-artifact-hashes.nix", + nixpkgs_root=NIXPKGS_ROOT, + flutter_compact_version=flutter_compact_version) + + stderr = nix_build_to_fail(code) + + pattern = re.compile( + r"/nix/store/.*-flutter-artifacts-(.+?)-(.+?).drv':\n\s+specified: .*\n\s+got:\s+(.+?)\n") + matches = pattern.findall(stderr) + result_dict = {} + + for match in matches: + flutter_platform, architecture, got = match + result_dict.setdefault(flutter_platform, {})[architecture] = got + + def sort_dict_recursive(d): + return { + k: sort_dict_recursive(v) if isinstance( + v, dict) else v for k, v in sorted( + d.items())} + result_dict = sort_dict_recursive(result_dict) + + return result_dict + + +def get_dart_hashes(dart_version): + platforms = [ + "x86_64-linux", + "aarch64-linux", + "x86_64-darwin", + "aarch64-darwin"] + result_dict = {} + for platform in platforms: + code = load_code( + "get-dart-hashes.nix", + dart_version=dart_version, + platform=platform) + stderr = nix_build_to_fail(code) + + pattern = re.compile(r"got:\s+(.+?)\n") + result_dict[platform] = pattern.findall(stderr)[0] + + return result_dict + + +def get_flutter_hash_and_src(flutter_version): + code = load_code( + "get-flutter.nix", + flutter_version=flutter_version, + hash="") + + stderr = nix_build_to_fail(code) + pattern = re.compile(r"got:\s+(.+?)\n") + hash = pattern.findall(stderr)[0] + + code = load_code( + "get-flutter.nix", + flutter_version=flutter_version, + hash=hash) + + return (hash, nix_build(code)) + + +def get_pubspec_lock(flutter_compact_version, flutter_src): + code = load_code( + "get-pubspec-lock.nix", + flutter_compact_version=flutter_compact_version, + flutter_src=flutter_src, + hash="") + + stderr = nix_build_to_fail(code) + pattern = re.compile(r"got:\s+(.+?)\n") + hash = pattern.findall(stderr)[0] + + code = load_code( + "get-pubspec-lock.nix", + flutter_compact_version=flutter_compact_version, + flutter_src=flutter_src, + hash=hash) + + pubspec_lock_file = nix_build(code) + + with open(pubspec_lock_file, 'r') as f: + pubspec_lock_yaml = f.read() + + return yaml.safe_load(pubspec_lock_yaml) + + +def write_data( + nixpkgs_flutter_version_directory, + flutter_version, + engine_hash, + dart_version, + dart_hash, + flutter_hash, + artifact_hashes, + pubspec_lock): + with open(f"{nixpkgs_flutter_version_directory}/data.json", "w") as f: + f.write(json.dumps({ + "version": flutter_version, + "engineVersion": engine_hash, + "dartVersion": dart_version, + "dartHash": dart_hash, + "flutterHash": flutter_hash, + "artifactHashes": artifact_hashes, + "pubspecLock": pubspec_lock, + }, indent=2).strip() + "\n") + + +def update_all_packages(): + versions_directory = f"{NIXPKGS_ROOT}/pkgs/development/compilers/flutter/versions" + versions = [directory for directory in os.listdir(versions_directory)] + versions = sorted(versions, key=lambda x: ( + int(x.split('_')[0]), int(x.split('_')[1])), reverse=True) + + new_content = [ + "flutterPackages = recurseIntoAttrs (callPackage ../development/compilers/flutter { });", + "flutter = flutterPackages.stable;", + ] + [f"flutter{version.replace('_', '')} = flutterPackages.v{version};" for version in versions] + + with open(f"{NIXPKGS_ROOT}/pkgs/top-level/all-packages.nix", 'r') as file: + lines = file.read().splitlines(keepends=True) + + start = -1 + end = -1 + for i, line in enumerate(lines): + if "flutterPackages = recurseIntoAttrs (callPackage ../development/compilers/flutter { });" in line: + start = i + if start != -1 and len(line.strip()) == 0: + end = i + break + + if start != -1 and end != -1: + del lines[start:end] + lines[start:start] = [f" {l}\n" for l in new_content] + + with open(f"{NIXPKGS_ROOT}/pkgs/top-level/all-packages.nix", 'w') as file: + file.write("".join(lines)) + + +# Finds Flutter version, Dart version, and Engine hash. +# If the Flutter version is given, it uses that. Otherwise finds the +# latest stable Flutter version. +def find_versions(flutter_version=None): + engine_hash = None + dart_version = None + + releases = json.load(urllib.request.urlopen( + "https://storage.googleapis.com/flutter_infra_release/releases/releases_linux.json")) + + if not flutter_version: + stable_hash = releases['current_release']['stable'] + release = next( + filter( + lambda release: release['hash'] == stable_hash, + releases['releases'])) + flutter_version = release['version'] + + tags = subprocess.Popen(['git', + 'ls-remote', + '--tags', + 'https://github.com/flutter/engine.git'], + stdout=subprocess.PIPE, + text=True).communicate()[0].strip() + + try: + engine_hash = next( + filter( + lambda line: line.endswith(f'refs/tags/{flutter_version}'), + tags.splitlines())).split('refs')[0].strip() + except StopIteration: + exit( + f"Couldn't find Engine hash for Flutter version: {flutter_version}") + + try: + dart_version = next( + filter( + lambda release: release['version'] == flutter_version, + releases['releases']))['dart_sdk_version'] + except StopIteration: + exit( + f"Couldn't find Dart version for Flutter version: {flutter_version}") + + return (flutter_version, engine_hash, dart_version) + + +def main(): + parser = argparse.ArgumentParser(description='Update Flutter in Nixpkgs') + parser.add_argument('--version', type=str, help='Specify Flutter version') + parser.add_argument('--artifact-hashes', action='store_true', + help='Whether to get artifact hashes') + args = parser.parse_args() + + (flutter_version, engine_hash, dart_version) = find_versions(args.version) + + flutter_compact_version = '_'.join(flutter_version.split('.')[:2]) + + if args.artifact_hashes: + print( + json.dumps( + get_artifact_hashes(flutter_compact_version), + indent=2).strip() + + "\n") + return + + print(f"Flutter version: {flutter_version} ({flutter_compact_version})") + print(f"Engine hash: {engine_hash}") + print(f"Dart version: {dart_version}") + + dart_hash = get_dart_hashes(dart_version) + (flutter_hash, flutter_src) = get_flutter_hash_and_src(flutter_version) + + nixpkgs_flutter_version_directory = f"{NIXPKGS_ROOT}/pkgs/development/compilers/flutter/versions/{flutter_compact_version}" + + if os.path.exists(f"{nixpkgs_flutter_version_directory}/data.json"): + os.remove(f"{nixpkgs_flutter_version_directory}/data.json") + os.makedirs(nixpkgs_flutter_version_directory, exist_ok=True) + + update_all_packages() + + common_data_args = { + "nixpkgs_flutter_version_directory": nixpkgs_flutter_version_directory, + "flutter_version": flutter_version, + "dart_version": dart_version, + "engine_hash": engine_hash, + "flutter_hash": flutter_hash, + "dart_hash": dart_hash, + } + + write_data( + pubspec_lock={}, + artifact_hashes={}, + **common_data_args) + + pubspec_lock = get_pubspec_lock(flutter_compact_version, flutter_src) + + write_data( + pubspec_lock=pubspec_lock, + artifact_hashes={}, + **common_data_args) + + artifact_hashes = get_artifact_hashes(flutter_compact_version) + + write_data( + pubspec_lock=pubspec_lock, + artifact_hashes=artifact_hashes, + **common_data_args) + + +if __name__ == "__main__": + main() diff --git a/pkgs/development/compilers/flutter/versions/3_13/data.json b/pkgs/development/compilers/flutter/versions/3_13/data.json new file mode 100644 index 0000000000000..72e002f144d3f --- /dev/null +++ b/pkgs/development/compilers/flutter/versions/3_13/data.json @@ -0,0 +1,901 @@ +{ + "version": "3.13.8", + "engineVersion": "767d8c75e898091b925519803830fc2721658d07", + "dartVersion": "3.1.4", + "dartHash": { + "x86_64-linux": "sha256-42wrqzjRcFDWw2aEY6+/faX+QE9PA8FmRWP4M/NkgBE=", + "aarch64-linux": "sha256-/tWWWwTOgXHbwzotc7ZDDZa8+cbX6NODGYrjLK9gPPg=", + "x86_64-darwin": "sha256-BchKowKd6BscVuk/dXibcQzdFkW9//GDfll77mHEI4M=", + "aarch64-darwin": "sha256-9yrx09vYrOTmdqkfJI7mfh7DI1/rg67tPlf82m5+iKI=" + }, + "flutterHash": "sha256-00G030FvZZTsdf9ruFs9jdIHcC5h+xpp4NlmL64qVZA=", + "artifactHashes": { + "android": { + "x86_64-linux": "sha256-Uc36aBq8wQo2aEvjAPOoixZElWOE/GNRm2GUfhbwT3Y=", + "aarch64-linux": "sha256-Uc36aBq8wQo2aEvjAPOoixZElWOE/GNRm2GUfhbwT3Y=", + "x86_64-darwin": "sha256-v/6/GTj7732fEOIgSaoM00yaw2qNwOMuvbuoCvii7vQ=" + }, + "fuchsia": { + "x86_64-linux": "sha256-eu0BERdz53CkSexbpu3KA7O6Q4g0s9SGD3t1Snsk3Fk=", + "aarch64-linux": "sha256-eu0BERdz53CkSexbpu3KA7O6Q4g0s9SGD3t1Snsk3Fk=", + "x86_64-darwin": "sha256-eu0BERdz53CkSexbpu3KA7O6Q4g0s9SGD3t1Snsk3Fk=" + }, + "ios": { + "x86_64-linux": "sha256-QwkeGnutTVsm682CqxRtEd9rKUvN7zlAJcqkvAQYwao=", + "aarch64-linux": "sha256-QwkeGnutTVsm682CqxRtEd9rKUvN7zlAJcqkvAQYwao=", + "x86_64-darwin": "sha256-QwkeGnutTVsm682CqxRtEd9rKUvN7zlAJcqkvAQYwao=" + }, + "linux": { + "x86_64-linux": "sha256-0gIOwux3YBdmcXgwICr8dpftj1CauaBUX8Rt5GG0WSs=", + "aarch64-linux": "sha256-drGHsuJoOCLqrhVrXczqJRCOtpeWVlqdWW0OSMS/l5M=", + "x86_64-darwin": "sha256-0gIOwux3YBdmcXgwICr8dpftj1CauaBUX8Rt5GG0WSs=" + }, + "macos": { + "x86_64-linux": "sha256-9WqCJQ37mcGc5tzfqQoY5CqHWHGTizjXf9p73bdnNWc=", + "aarch64-linux": "sha256-9WqCJQ37mcGc5tzfqQoY5CqHWHGTizjXf9p73bdnNWc=", + "x86_64-darwin": "sha256-9WqCJQ37mcGc5tzfqQoY5CqHWHGTizjXf9p73bdnNWc=" + }, + "universal": { + "x86_64-linux": "sha256-wATt1UPjo/fh7RFO1vvcUAdo0dMAaaOUIuzYodsM0v0=", + "aarch64-linux": "sha256-Z9bszNaIpCccG7OfvE5WFsw36dITiyCQAZ6p29+Yq68=", + "x86_64-darwin": "sha256-qN5bAXRfQ78TWF3FLBIxWzUB5y5OrZVQTEilY5J/+2k=" + }, + "web": { + "x86_64-linux": "sha256-DVXJOOFxv7tKt3d0NaYMexkphEcr7+gDFV67I6iAYa0=", + "aarch64-linux": "sha256-DVXJOOFxv7tKt3d0NaYMexkphEcr7+gDFV67I6iAYa0=", + "x86_64-darwin": "sha256-DVXJOOFxv7tKt3d0NaYMexkphEcr7+gDFV67I6iAYa0=" + }, + "windows": { + "x86_64-linux": "sha256-s8fJtwQkuZaGXr6vrPiKfpwP/NfewbETwyp9ERGqHYI=", + "aarch64-linux": "sha256-s8fJtwQkuZaGXr6vrPiKfpwP/NfewbETwyp9ERGqHYI=", + "x86_64-darwin": "sha256-s8fJtwQkuZaGXr6vrPiKfpwP/NfewbETwyp9ERGqHYI=" + } + }, + "pubspecLock": { + "packages": { + "_fe_analyzer_shared": { + "dependency": "direct main", + "description": { + "name": "_fe_analyzer_shared", + "sha256": "ae92f5d747aee634b87f89d9946000c2de774be1d6ac3e58268224348cd0101a", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "61.0.0" + }, + "analyzer": { + "dependency": "direct main", + "description": { + "name": "analyzer", + "sha256": "ea3d8652bda62982addfd92fdc2d0214e5f82e43325104990d4f4c4a2a313562", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "5.13.0" + }, + "archive": { + "dependency": "direct main", + "description": { + "name": "archive", + "sha256": "80e5141fafcb3361653ce308776cfd7d45e6e9fbb429e14eec571382c0c5fecb", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "3.3.2" + }, + "args": { + "dependency": "direct main", + "description": { + "name": "args", + "sha256": "eef6c46b622e0494a36c5a12d10d77fb4e855501a91c1b9ef9339326e58f0596", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "2.4.2" + }, + "async": { + "dependency": "direct main", + "description": { + "name": "async", + "sha256": "947bfcf187f74dbc5e146c9eb9c0f10c9f8b30743e341481c1e2ed3ecc18c20c", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "2.11.0" + }, + "boolean_selector": { + "dependency": "direct main", + "description": { + "name": "boolean_selector", + "sha256": "6cfb5af12253eaf2b368f07bacc5a80d1301a071c73360d746b7f2e32d762c66", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "2.1.1" + }, + "browser_launcher": { + "dependency": "direct main", + "description": { + "name": "browser_launcher", + "sha256": "6ee4c6b1f68a42e769ef6e663c4f56708522f7bce9d2ab6e308a37b612ffa4ec", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "1.1.1" + }, + "built_collection": { + "dependency": "direct main", + "description": { + "name": "built_collection", + "sha256": "376e3dd27b51ea877c28d525560790aee2e6fbb5f20e2f85d5081027d94e2100", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "5.1.1" + }, + "built_value": { + "dependency": "direct main", + "description": { + "name": "built_value", + "sha256": "598a2a682e2a7a90f08ba39c0aaa9374c5112340f0a2e275f61b59389543d166", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "8.6.1" + }, + "checked_yaml": { + "dependency": "direct dev", + "description": { + "name": "checked_yaml", + "sha256": "feb6bed21949061731a7a75fc5d2aa727cf160b91af9a3e464c5e3a32e28b5ff", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "2.0.3" + }, + "clock": { + "dependency": "direct main", + "description": { + "name": "clock", + "sha256": "cb6d7f03e1de671e34607e909a7213e31d7752be4fb66a86d29fe1eb14bfb5cf", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "1.1.1" + }, + "collection": { + "dependency": "direct dev", + "description": { + "name": "collection", + "sha256": "f092b211a4319e98e5ff58223576de6c2803db36221657b46c82574721240687", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "1.17.2" + }, + "completion": { + "dependency": "direct main", + "description": { + "name": "completion", + "sha256": "f11b7a628e6c42b9edc9b0bc3aa490e2d930397546d2f794e8e1325909d11c60", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "1.0.1" + }, + "convert": { + "dependency": "direct main", + "description": { + "name": "convert", + "sha256": "0f08b14755d163f6e2134cb58222dd25ea2a2ee8a195e53983d57c075324d592", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "3.1.1" + }, + "coverage": { + "dependency": "direct main", + "description": { + "name": "coverage", + "sha256": "2fb815080e44a09b85e0f2ca8a820b15053982b2e714b59267719e8a9ff17097", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "1.6.3" + }, + "crypto": { + "dependency": "direct main", + "description": { + "name": "crypto", + "sha256": "ff625774173754681d66daaf4a448684fb04b78f902da9cb3d308c19cc5e8bab", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "3.0.3" + }, + "csslib": { + "dependency": "direct main", + "description": { + "name": "csslib", + "sha256": "706b5707578e0c1b4b7550f64078f0a0f19dec3f50a178ffae7006b0a9ca58fb", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "1.0.0" + }, + "dap": { + "dependency": "direct main", + "description": { + "name": "dap", + "sha256": "2120d4a8cbad45e5dbd518b713e8f064274e0a4c0e3edcaef1f4cf9ccbc90cd9", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "1.0.0" + }, + "dds": { + "dependency": "direct main", + "description": { + "name": "dds", + "sha256": "397c3c80919ee187b2efc28205af3c0378b6b757ea6d059083dece145a2e31e9", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "2.9.0+hotfix" + }, + "dds_service_extensions": { + "dependency": "direct main", + "description": { + "name": "dds_service_extensions", + "sha256": "9ac669bef49a4c13ed62073685089be121200fb213800ec59c202e90d569ea44", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "1.5.0" + }, + "devtools_shared": { + "dependency": "direct main", + "description": { + "name": "devtools_shared", + "sha256": "ad58ac3a5df41adf08d0d6f0a4d73349533edcc383ee93a30ac3d0fd0bb6df49", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "2.24.0" + }, + "dwds": { + "dependency": "direct main", + "description": { + "name": "dwds", + "sha256": "b6dad73ae56f00bff7647f531b9db018005f713328e816e7a277b544184e9170", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "19.0.1+1" + }, + "fake_async": { + "dependency": "direct main", + "description": { + "name": "fake_async", + "sha256": "511392330127add0b769b75a987850d136345d9227c6b94c96a04cf4a391bf78", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "1.3.1" + }, + "file": { + "dependency": "direct main", + "description": { + "name": "file", + "sha256": "1b92bec4fc2a72f59a8e15af5f52cd441e4a7860b49499d69dfa817af20e925d", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "6.1.4" + }, + "file_testing": { + "dependency": "direct dev", + "description": { + "name": "file_testing", + "sha256": "0aaadb4025bd350403f4308ad6c4cea953278d9407814b8342558e4946840fb5", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "3.0.0" + }, + "fixnum": { + "dependency": "direct main", + "description": { + "name": "fixnum", + "sha256": "25517a4deb0c03aa0f32fd12db525856438902d9c16536311e76cdc57b31d7d1", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "1.1.0" + }, + "flutter_template_images": { + "dependency": "direct main", + "description": { + "name": "flutter_template_images", + "sha256": "fd3e55af73c577b9e3f88d4080d3e366cb5c8ef3fbd50b94dfeca56bb0235df6", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "4.2.0" + }, + "frontend_server_client": { + "dependency": "direct main", + "description": { + "name": "frontend_server_client", + "sha256": "408e3ca148b31c20282ad6f37ebfa6f4bdc8fede5b74bc2f08d9d92b55db3612", + 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"3d2ad6751b3c16cf07c7fca317a1413b3f26530319181b37e3b9039b84fc01d8", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "1.1.0" + }, + "web_socket_channel": { + "dependency": "direct main", + "description": { + "name": "web_socket_channel", + "sha256": "d88238e5eac9a42bb43ca4e721edba3c08c6354d4a53063afaa568516217621b", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "2.4.0" + }, + "webdriver": { + "dependency": "direct main", + "description": { + "name": "webdriver", + "sha256": "3c923e918918feeb90c4c9fdf1fe39220fa4c0e8e2c0fffaded174498ef86c49", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "3.0.2" + }, + "webkit_inspection_protocol": { + "dependency": "direct main", + "description": { + "name": "webkit_inspection_protocol", + "sha256": "67d3a8b6c79e1987d19d848b0892e582dbb0c66c57cc1fef58a177dd2aa2823d", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "1.2.0" + }, + "xml": { + "dependency": "direct main", + "description": { + "name": "xml", + "sha256": "5bc72e1e45e941d825fd7468b9b4cc3b9327942649aeb6fc5cdbf135f0a86e84", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "6.3.0" + }, + "yaml": { + "dependency": "direct main", + "description": { + "name": "yaml", + "sha256": "75769501ea3489fca56601ff33454fe45507ea3bfb014161abc3b43ae25989d5", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "3.1.2" + } + }, + "sdks": { + "dart": ">=3.0.0 <4.0.0" + } + } +} diff --git a/pkgs/development/compilers/flutter/versions/3_13/patches/disable-auto-update-shared.patch b/pkgs/development/compilers/flutter/versions/3_13/patches/disable-auto-update-shared.patch new file mode 100644 index 0000000000000..be08c419fe1be --- /dev/null +++ b/pkgs/development/compilers/flutter/versions/3_13/patches/disable-auto-update-shared.patch @@ -0,0 +1,13 @@ +diff --git a/bin/internal/shared.sh b/bin/internal/shared.sh +index 3532c23114..25dfcae4c7 100644 +--- a/bin/internal/shared.sh ++++ b/bin/internal/shared.sh +@@ -229,8 +229,6 @@ function shared::execute() { + exit 1 + fi + +- upgrade_flutter 7< "$PROG_NAME" +- + BIN_NAME="$(basename "$PROG_NAME")" + case "$BIN_NAME" in + flutter*) diff --git a/pkgs/development/compilers/flutter/versions/3_16/data.json b/pkgs/development/compilers/flutter/versions/3_16/data.json new file mode 100644 index 0000000000000..100b2bd427d42 --- /dev/null +++ b/pkgs/development/compilers/flutter/versions/3_16/data.json @@ -0,0 +1,951 @@ +{ + "version": "3.16.7", + "engineVersion": "4a585b79294e830fa89c24924d58a27cc8fbf406", + "dartVersion": "3.2.4", + "dartHash": { + "x86_64-linux": "sha256-qslf+wgmNz9r+e45o3Bg9/vDj75GkM9gQE2tb5rbIvw=", + "aarch64-linux": "sha256-Wsm8GKi7PR5iGx/lNtp2qBK+lMk2NIHf/RvO5G94QnQ=", + "x86_64-darwin": "sha256-8DXMj0yhKpxHdqS0vr5C/RwhQGxvUmvxJA6mOgqBXU8=", + "aarch64-darwin": "sha256-ic6txmbhsv4CarUwG+4xqXsaQrMN4AQrWwg8DxsZGps=" + }, + "flutterHash": "sha256-j+tc8hMgZMBhju89n4e9tKRrq+CFBGOyeE0y+Z4FtHE=", + "artifactHashes": { + "android": { + "aarch64-linux": "sha256-j8jstEE1RsTVHJbq6f6We0An+CyJz9JH/YClyNA4mwg=", + "x86_64-darwin": "sha256-0FBI0CGMcxyttkzrdyjJlkGAjFd/yMuAQS3pDrNXZZw=", + "x86_64-linux": "sha256-j8jstEE1RsTVHJbq6f6We0An+CyJz9JH/YClyNA4mwg=" + }, + "fuchsia": { + "aarch64-linux": "sha256-eu0BERdz53CkSexbpu3KA7O6Q4g0s9SGD3t1Snsk3Fk=", + "x86_64-darwin": "sha256-eu0BERdz53CkSexbpu3KA7O6Q4g0s9SGD3t1Snsk3Fk=", + "x86_64-linux": "sha256-eu0BERdz53CkSexbpu3KA7O6Q4g0s9SGD3t1Snsk3Fk=" + }, + "ios": { + "aarch64-linux": "sha256-V3VXRX8hn45J+NhzKli+NAc3TGiSoeVQRlJte8DDbZw=", + "x86_64-darwin": "sha256-V3VXRX8hn45J+NhzKli+NAc3TGiSoeVQRlJte8DDbZw=", + "x86_64-linux": "sha256-V3VXRX8hn45J+NhzKli+NAc3TGiSoeVQRlJte8DDbZw=" + }, + "linux": { + "aarch64-linux": "sha256-LWpou3L7bAWGn8i4nDT/BZez2Uhf/LbqC2C4Z98hCHQ=", + "x86_64-darwin": "sha256-BzjmO4F8B9GagYPbdvoT55r+YgZcP4BUaKgJPGZDXOU=", + "x86_64-linux": "sha256-BzjmO4F8B9GagYPbdvoT55r+YgZcP4BUaKgJPGZDXOU=" + }, + "macos": { + "aarch64-linux": "sha256-BMFqhhy1O1hK33Pj2cxnCAzK9wwHkwT4gNbJ1GaLrnk=", + "x86_64-darwin": "sha256-BMFqhhy1O1hK33Pj2cxnCAzK9wwHkwT4gNbJ1GaLrnk=", + "x86_64-linux": "sha256-BMFqhhy1O1hK33Pj2cxnCAzK9wwHkwT4gNbJ1GaLrnk=" + }, + "universal": { + "aarch64-linux": "sha256-uB2YZRjioP/koMbPvaBHsezjPO0w5a+BpxZaDuiINIY=", + "x86_64-darwin": "sha256-Qwf12gMqrW5nDC9Is08oxWTbKMptRQRAIb58JETq3xA=", + "x86_64-linux": "sha256-quSFKx7TZRJpK+4YDt5f9jwr7rZsSsaXMxhJ8vIcczQ=" + }, + "web": { + "aarch64-linux": "sha256-rQphVm+T4k5B4OYYw0sJwYBOsNvUOC9fu8IuvXN7hVw=", + "x86_64-darwin": "sha256-rQphVm+T4k5B4OYYw0sJwYBOsNvUOC9fu8IuvXN7hVw=", + "x86_64-linux": "sha256-rQphVm+T4k5B4OYYw0sJwYBOsNvUOC9fu8IuvXN7hVw=" + }, + "windows": { + "aarch64-linux": "sha256-HL3QLwzze9aO+T/2/xbHqhKV1/ba++MuRnk206hfJdU=", + "x86_64-darwin": "sha256-HL3QLwzze9aO+T/2/xbHqhKV1/ba++MuRnk206hfJdU=", + "x86_64-linux": "sha256-HL3QLwzze9aO+T/2/xbHqhKV1/ba++MuRnk206hfJdU=" + } + }, + "pubspecLock": { + "packages": { + "_fe_analyzer_shared": { + "dependency": "direct main", + "description": { + "name": "_fe_analyzer_shared", + "sha256": "eb376e9acf6938204f90eb3b1f00b578640d3188b4c8a8ec054f9f479af8d051", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "64.0.0" + }, + "analyzer": { + "dependency": "direct main", + "description": { + "name": "analyzer", + "sha256": "69f54f967773f6c26c7dcb13e93d7ccee8b17a641689da39e878d5cf13b06893", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "6.2.0" + }, + "archive": { + "dependency": "direct main", + "description": { + "name": "archive", + "sha256": "80e5141fafcb3361653ce308776cfd7d45e6e9fbb429e14eec571382c0c5fecb", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "3.3.2" + }, + "args": { + "dependency": "direct main", + "description": { + "name": "args", + "sha256": "eef6c46b622e0494a36c5a12d10d77fb4e855501a91c1b9ef9339326e58f0596", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "2.4.2" + }, + "async": { + "dependency": "direct main", + "description": { + "name": "async", + "sha256": "947bfcf187f74dbc5e146c9eb9c0f10c9f8b30743e341481c1e2ed3ecc18c20c", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "2.11.0" + }, + "boolean_selector": { + "dependency": "direct main", + "description": { + "name": "boolean_selector", + "sha256": "6cfb5af12253eaf2b368f07bacc5a80d1301a071c73360d746b7f2e32d762c66", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "2.1.1" + }, + "browser_launcher": { + "dependency": "direct main", + "description": { + "name": "browser_launcher", + "sha256": "6ee4c6b1f68a42e769ef6e663c4f56708522f7bce9d2ab6e308a37b612ffa4ec", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "1.1.1" + }, + "built_collection": { + "dependency": "direct main", + "description": { + "name": "built_collection", + "sha256": "376e3dd27b51ea877c28d525560790aee2e6fbb5f20e2f85d5081027d94e2100", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "5.1.1" + }, + "built_value": { + "dependency": "direct main", + "description": { + "name": "built_value", + "sha256": "a8de5955205b4d1dbbbc267daddf2178bd737e4bab8987c04a500478c9651e74", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "8.6.3" + }, + "checked_yaml": { + "dependency": "direct dev", + "description": { + "name": "checked_yaml", + "sha256": "feb6bed21949061731a7a75fc5d2aa727cf160b91af9a3e464c5e3a32e28b5ff", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "2.0.3" + }, + "cli_config": { + "dependency": "direct main", + "description": { + "name": "cli_config", + "sha256": "76910209e4aee158f5e26721509c98d7cbb97085da637f62b7c461298033752d", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "0.1.1" + }, + "clock": { + "dependency": "direct main", + "description": { + "name": "clock", + "sha256": "cb6d7f03e1de671e34607e909a7213e31d7752be4fb66a86d29fe1eb14bfb5cf", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "1.1.1" + }, + "collection": { + "dependency": "direct dev", + "description": { + "name": "collection", + "sha256": "ee67cb0715911d28db6bf4af1026078bd6f0128b07a5f66fb2ed94ec6783c09a", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "1.18.0" + }, + "completion": { + "dependency": "direct main", + "description": { + "name": "completion", + "sha256": "f11b7a628e6c42b9edc9b0bc3aa490e2d930397546d2f794e8e1325909d11c60", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "1.0.1" + }, + "convert": { + "dependency": "direct main", + "description": { + "name": "convert", + "sha256": "0f08b14755d163f6e2134cb58222dd25ea2a2ee8a195e53983d57c075324d592", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "3.1.1" + }, + "coverage": { + "dependency": "direct main", + "description": { + "name": "coverage", + "sha256": "2fb815080e44a09b85e0f2ca8a820b15053982b2e714b59267719e8a9ff17097", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "1.6.3" + }, + "crypto": { + "dependency": "direct main", + "description": { + "name": "crypto", + "sha256": "ff625774173754681d66daaf4a448684fb04b78f902da9cb3d308c19cc5e8bab", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "3.0.3" + }, + "csslib": { + "dependency": "direct main", + "description": { + "name": "csslib", + "sha256": "706b5707578e0c1b4b7550f64078f0a0f19dec3f50a178ffae7006b0a9ca58fb", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "1.0.0" + }, + "dap": { + "dependency": "direct main", + "description": { + "name": "dap", + "sha256": "1dc9a11bc60836b151672d3edb6a56a18383ecf122e56eaf5837b32c81641aeb", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "1.1.0" + }, + "dds": { + "dependency": "direct main", + "description": { + "name": "dds", + "sha256": "b7c2e57d24edda6b1d37fbd0748aefc1d75d9257a7dd0328d31398754144eac4", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "2.9.5" + }, + "dds_service_extensions": { + "dependency": "direct main", + "description": { + "name": "dds_service_extensions", + "sha256": "609d0a5d928502f7d160e4466f644474352721f4880c840ec9e8d208fff16d95", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "1.6.0" + }, + "devtools_shared": { + "dependency": "direct main", + "description": { + "name": "devtools_shared", + "sha256": "2fc4a90ba419b5cb59c6c7a060e94e9c4fdd993d96ef598910c572cb107f1f42", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "2.26.1" + }, + "dwds": { + "dependency": "direct main", + "description": { + "name": "dwds", + "sha256": "44778de6f92203fad32c550ca0d7a9bd1377e6926272ff7eda7c7a1bdde0cf2b", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "21.0.0+1" + }, + "fake_async": { + "dependency": "direct main", + "description": { + "name": "fake_async", + "sha256": "511392330127add0b769b75a987850d136345d9227c6b94c96a04cf4a391bf78", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "1.3.1" + }, + "file": { + "dependency": "direct main", + "description": { + "name": "file", + "sha256": "1b92bec4fc2a72f59a8e15af5f52cd441e4a7860b49499d69dfa817af20e925d", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "6.1.4" + }, + "file_testing": { + "dependency": "direct dev", + "description": { + "name": "file_testing", + "sha256": "0aaadb4025bd350403f4308ad6c4cea953278d9407814b8342558e4946840fb5", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "3.0.0" + }, + "fixnum": { + "dependency": "direct main", + "description": { + "name": "fixnum", + "sha256": "25517a4deb0c03aa0f32fd12db525856438902d9c16536311e76cdc57b31d7d1", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "1.1.0" + }, + "flutter_template_images": { + "dependency": "direct main", + "description": { + "name": "flutter_template_images", + "sha256": "fd3e55af73c577b9e3f88d4080d3e366cb5c8ef3fbd50b94dfeca56bb0235df6", + "url": 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"source": "hosted", + "version": "1.0.4" + }, + "multicast_dns": { + "dependency": "direct main", + "description": { + "name": "multicast_dns", + "sha256": "f4fd1c3365171fac5160afcb1a283001d3413dee5fd41c61d80888952d609379", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "0.3.2+4" + }, + "mustache_template": { + "dependency": "direct main", + "description": { + "name": "mustache_template", + "sha256": "a46e26f91445bfb0b60519be280555b06792460b27b19e2b19ad5b9740df5d1c", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "2.0.0" + }, + "native_assets_builder": { + "dependency": "direct main", + "description": { + "name": "native_assets_builder", + "sha256": "83e92c0f4917cfea0af594aac9ab5ee7d396fbcee1c19839ff33b8e1666cd84e", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "0.2.3" + }, + "native_assets_cli": { + "dependency": "direct main", + "description": { + "name": "native_assets_cli", + "sha256": "51d1af3ebc2437f5883ed749f1877cb82d6a569b0712dad02c8370e6e4f2b5e3", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "0.2.0" + }, + "native_stack_traces": { + "dependency": "direct main", + "description": { + "name": "native_stack_traces", + "sha256": "c797830b9910d13b0f4e70ddef15cde034214fe3bdb8092c4ea5ffad2f74013f", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "0.5.6" + }, + "node_preamble": { + "dependency": "direct dev", + "description": { + "name": "node_preamble", + "sha256": "6e7eac89047ab8a8d26cf16127b5ed26de65209847630400f9aefd7cd5c730db", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "2.0.2" + }, + "package_config": { + "dependency": "direct main", + "description": { + "name": "package_config", + "sha256": "1c5b77ccc91e4823a5af61ee74e6b972db1ef98c2ff5a18d3161c982a55448bd", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "2.1.0" + }, + "path": { + "dependency": "direct main", + "description": { + "name": "path", + "sha256": "8829d8a55c13fc0e37127c29fedf290c102f4e40ae94ada574091fe0ff96c917", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "1.8.3" + }, + "petitparser": { + "dependency": "direct main", + "description": { + "name": "petitparser", + "sha256": "eeb2d1428ee7f4170e2bd498827296a18d4e7fc462b71727d111c0ac7707cfa6", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "6.0.1" + }, + "platform": { + "dependency": "direct main", + "description": { + "name": "platform", + "sha256": "ae68c7bfcd7383af3629daafb32fb4e8681c7154428da4febcff06200585f102", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "3.1.2" + }, + "pool": { + "dependency": "direct main", + "description": { + "name": "pool", + "sha256": "20fe868b6314b322ea036ba325e6fc0711a22948856475e2c2b6306e8ab39c2a", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "1.5.1" + }, + "process": { + "dependency": "direct main", + "description": { + "name": "process", + "sha256": "53fd8db9cec1d37b0574e12f07520d582019cb6c44abf5479a01505099a34a09", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "4.2.4" + }, + "pub_semver": { + "dependency": "direct main", + "description": { + "name": "pub_semver", + "sha256": "40d3ab1bbd474c4c2328c91e3a7df8c6dd629b79ece4c4bd04bee496a224fb0c", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "2.1.4" + }, + "pubspec_parse": { + "dependency": "direct dev", + "description": { + "name": "pubspec_parse", + "sha256": "c63b2876e58e194e4b0828fcb080ad0e06d051cb607a6be51a9e084f47cb9367", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "1.2.3" + }, + "shelf": { + "dependency": "direct main", + "description": { + "name": "shelf", + "sha256": "ad29c505aee705f41a4d8963641f91ac4cee3c8fad5947e033390a7bd8180fa4", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "1.4.1" + }, + "shelf_packages_handler": { + "dependency": "direct main", + "description": { + "name": "shelf_packages_handler", + "sha256": "89f967eca29607c933ba9571d838be31d67f53f6e4ee15147d5dc2934fee1b1e", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "3.0.2" + }, + "shelf_proxy": { + "dependency": "direct main", + "description": { + "name": "shelf_proxy", + "sha256": "a71d2307f4393211930c590c3d2c00630f6c5a7a77edc1ef6436dfd85a6a7ee3", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "1.0.4" + }, + "shelf_static": { + "dependency": "direct main", + "description": { + "name": "shelf_static", + "sha256": "a41d3f53c4adf0f57480578c1d61d90342cd617de7fc8077b1304643c2d85c1e", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "1.1.2" + }, + "shelf_web_socket": { + "dependency": "direct main", + "description": { + "name": "shelf_web_socket", + "sha256": "9ca081be41c60190ebcb4766b2486a7d50261db7bd0f5d9615f2d653637a84c1", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "1.0.4" + }, + "source_map_stack_trace": { + "dependency": "direct main", + "description": { + "name": "source_map_stack_trace", + "sha256": "84cf769ad83aa6bb61e0aa5a18e53aea683395f196a6f39c4c881fb90ed4f7ae", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "2.1.1" + }, + "source_maps": { + "dependency": "direct main", + "description": { + "name": "source_maps", + "sha256": "708b3f6b97248e5781f493b765c3337db11c5d2c81c3094f10904bfa8004c703", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "0.10.12" + }, + "source_span": { + "dependency": "direct main", + "description": { + "name": "source_span", + "sha256": "53e943d4206a5e30df338fd4c6e7a077e02254531b138a15aec3bd143c1a8b3c", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "1.10.0" + }, + "sse": { + "dependency": "direct main", + "description": { + "name": "sse", + "sha256": "3ff9088cac3f45aa8b91336f1962e3ea6c81baaba0bbba361c05f8aa7fb59442", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "4.1.2" + }, + "stack_trace": { + "dependency": "direct main", + "description": { + "name": "stack_trace", + "sha256": "73713990125a6d93122541237550ee3352a2d84baad52d375a4cad2eb9b7ce0b", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "1.11.1" + }, + "standard_message_codec": { + "dependency": "direct main", + "description": { + "name": "standard_message_codec", + "sha256": "fc7dd712d191b7e33196a0ecf354c4573492bb95995e7166cb6f73b047f9cae0", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "0.0.1+4" + }, + "stream_channel": { + "dependency": "direct main", + "description": { + "name": "stream_channel", + "sha256": "ba2aa5d8cc609d96bbb2899c28934f9e1af5cddbd60a827822ea467161eb54e7", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "2.1.2" + }, + "string_scanner": { + "dependency": "direct main", + "description": { + "name": "string_scanner", + "sha256": "556692adab6cfa87322a115640c11f13cb77b3f076ddcc5d6ae3c20242bedcde", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "1.2.0" + }, + "sync_http": { + "dependency": "direct main", + "description": { + "name": "sync_http", + "sha256": "7f0cd72eca000d2e026bcd6f990b81d0ca06022ef4e32fb257b30d3d1014a961", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "0.3.1" + }, + "term_glyph": { + "dependency": "direct main", + "description": { + "name": "term_glyph", + "sha256": "a29248a84fbb7c79282b40b8c72a1209db169a2e0542bce341da992fe1bc7e84", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "1.2.1" + }, + "test": { + "dependency": "direct dev", + "description": { + "name": "test", + "sha256": "9b0dd8e36af4a5b1569029949d50a52cb2a2a2fdaa20cebb96e6603b9ae241f9", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "1.24.6" + }, + "test_api": { + "dependency": "direct main", + "description": { + "name": "test_api", + "sha256": "5c2f730018264d276c20e4f1503fd1308dfbbae39ec8ee63c5236311ac06954b", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "0.6.1" + }, + "test_core": { + "dependency": "direct main", + "description": { + "name": "test_core", + "sha256": "4bef837e56375537055fdbbbf6dd458b1859881f4c7e6da936158f77d61ab265", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "0.5.6" + }, + "typed_data": { + "dependency": "direct main", + "description": { + "name": "typed_data", + "sha256": "facc8d6582f16042dd49f2463ff1bd6e2c9ef9f3d5da3d9b087e244a7b564b3c", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "1.3.2" + }, + "unified_analytics": { + "dependency": "direct main", + "description": { + "name": "unified_analytics", + "sha256": "fbcb0ad896a15c1ddea7ec45e8bfc92a894490e5792e07b74b2e6e992f4c77f8", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "5.8.0" + }, + "usage": { + "dependency": "direct main", + "description": { + "name": "usage", + "sha256": "0bdbde65a6e710343d02a56552eeaefd20b735e04bfb6b3ee025b6b22e8d0e15", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "4.1.1" + }, + "uuid": { + "dependency": "direct main", + "description": { + "name": "uuid", + "sha256": "648e103079f7c64a36dc7d39369cabb358d377078a051d6ae2ad3aa539519313", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "3.0.7" + }, + "vm_service": { + "dependency": "direct main", + "description": { + "name": "vm_service", + "sha256": "c538be99af830f478718b51630ec1b6bee5e74e52c8a802d328d9e71d35d2583", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "11.10.0" + }, + "vm_snapshot_analysis": { + "dependency": "direct main", + "description": { + "name": "vm_snapshot_analysis", + "sha256": "5a79b9fbb6be2555090f55b03b23907e75d44c3fd7bdd88da09848aa5a1914c8", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "0.7.6" + }, + "watcher": { + "dependency": "direct main", + "description": { + "name": "watcher", + "sha256": "3d2ad6751b3c16cf07c7fca317a1413b3f26530319181b37e3b9039b84fc01d8", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "1.1.0" + }, + "web_socket_channel": { + "dependency": "direct main", + "description": { + "name": "web_socket_channel", + "sha256": "d88238e5eac9a42bb43ca4e721edba3c08c6354d4a53063afaa568516217621b", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "2.4.0" + }, + "webdriver": { + "dependency": "direct main", + "description": { + "name": "webdriver", + "sha256": "3c923e918918feeb90c4c9fdf1fe39220fa4c0e8e2c0fffaded174498ef86c49", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "3.0.2" + }, + "webkit_inspection_protocol": { + "dependency": "direct main", + "description": { + "name": "webkit_inspection_protocol", + "sha256": "87d3f2333bb240704cd3f1c6b5b7acd8a10e7f0bc28c28dcf14e782014f4a572", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "1.2.1" + }, + "xml": { + "dependency": "direct main", + "description": { + "name": "xml", + "sha256": "af5e77e9b83f2f4adc5d3f0a4ece1c7f45a2467b695c2540381bac793e34e556", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "6.4.2" + }, + "yaml": { + "dependency": "direct main", + "description": { + "name": "yaml", + "sha256": "75769501ea3489fca56601ff33454fe45507ea3bfb014161abc3b43ae25989d5", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "3.1.2" + }, + "yaml_edit": { + "dependency": "direct main", + "description": { + "name": "yaml_edit", + "sha256": "1579d4a0340a83cf9e4d580ea51a16329c916973bffd5bd4b45e911b25d46bfd", + "url": "https://pub.dev" + }, + "source": "hosted", + "version": "2.1.1" + } + }, + "sdks": { + "dart": ">=3.2.0-36.0.dev <4.0.0" + } + } +} diff --git a/pkgs/development/compilers/flutter/versions/3_16/patches/disable-auto-update-shared.patch b/pkgs/development/compilers/flutter/versions/3_16/patches/disable-auto-update-shared.patch new file mode 100644 index 0000000000000..961b41f7327c9 --- /dev/null +++ b/pkgs/development/compilers/flutter/versions/3_16/patches/disable-auto-update-shared.patch @@ -0,0 +1,13 @@ +diff --git a/bin/internal/shared.sh b/bin/internal/shared.sh +index 75d9d3013e..657ad3cb78 100644 +--- a/bin/internal/shared.sh ++++ b/bin/internal/shared.sh +@@ -245,7 +245,7 @@ function shared::execute() { + # and will corrupt each others' downloads. + # + # SHARED_NAME itself is prepared by the caller script. +- upgrade_flutter 7< "$SHARED_NAME" ++ # upgrade_flutter 7< "$SHARED_NAME" + + BIN_NAME="$(basename "$PROG_NAME")" + case "$BIN_NAME" in diff --git a/pkgs/development/compilers/flutter/wrapper.nix b/pkgs/development/compilers/flutter/wrapper.nix index 38c2eb289310c..4a7aedf97d38e 100644 --- a/pkgs/development/compilers/flutter/wrapper.nix +++ b/pkgs/development/compilers/flutter/wrapper.nix @@ -3,14 +3,14 @@ , darwin , callPackage , flutter -, supportedTargetPlatforms ? [ +, supportedTargetFlutterPlatforms ? [ "universal" "web" ] ++ lib.optional stdenv.hostPlatform.isLinux "linux" ++ lib.optional (stdenv.hostPlatform.isx86_64 || stdenv.hostPlatform.isDarwin) "android" ++ lib.optionals stdenv.hostPlatform.isDarwin [ "macos" "ios" ] -, artifactHashes ? (import ./artifacts/hashes.nix).${flutter.version} +, artifactHashes ? flutter.artifactHashes , extraPkgConfigPackages ? [ ] , extraLibraries ? [ ] , extraIncludes ? [ ] @@ -44,25 +44,26 @@ }: let - supportsLinuxDesktopTarget = builtins.elem "linux" supportedTargetPlatforms; + supportsLinuxDesktopTarget = builtins.elem "linux" supportedTargetFlutterPlatforms; - platformArtifacts = lib.genAttrs supportedTargetPlatforms (platform: + flutterPlatformArtifacts = lib.genAttrs supportedTargetFlutterPlatforms (flutterPlatform: (callPackage ./artifacts/prepare-artifacts.nix { src = callPackage ./artifacts/fetch-artifacts.nix { - inherit platform; + inherit flutterPlatform; + systemPlatform = stdenv.hostPlatform.system; flutter = callPackage ./wrapper.nix { inherit flutter; }; - hash = artifactHashes.${platform}.${stdenv.hostPlatform.system} or ""; + hash = artifactHashes.${flutterPlatform}.${stdenv.hostPlatform.system} or ""; }; })); cacheDir = symlinkJoin rec { name = "flutter-cache-dir"; - paths = builtins.attrValues platformArtifacts; + paths = builtins.attrValues flutterPlatformArtifacts; postBuild = '' mkdir -p "$out/bin/cache" ln -s '${flutter}/bin/cache/dart-sdk' "$out/bin/cache" ''; - passthru.platform = platformArtifacts; + passthru.flutterPlatform = flutterPlatformArtifacts; }; # By default, Flutter stores downloaded files (such as the Pub cache) in the SDK directory. @@ -127,6 +128,7 @@ in passthru = flutter.passthru // { inherit (flutter) version; unwrapped = flutter; + updateScript = ./update/update.py; inherit cacheDir; }; diff --git a/pkgs/development/compilers/fpc/default.nix b/pkgs/development/compilers/fpc/default.nix index ca16c08b57269..3c9eb60d57c70 100644 --- a/pkgs/development/compilers/fpc/default.nix +++ b/pkgs/development/compilers/fpc/default.nix @@ -36,11 +36,14 @@ stdenv.mkDerivation rec { substituteInPlace fpcsrc/compiler/systems/t_linux.pas --subst-var-by syslibpath "${glibc}/lib" # Replace the `codesign --remove-signature` command with a custom script, since `codesign` is not available # in nixpkgs + # Remove the -no_uuid strip flag which does not work on llvm-strip, only + # Apple strip. substituteInPlace fpcsrc/compiler/Makefile \ --replace \ "\$(CODESIGN) --remove-signature" \ "${./remove-signature.sh}" \ - --replace "ifneq (\$(CODESIGN),)" "ifeq (\$(OS_TARGET), darwin)" + --replace "ifneq (\$(CODESIGN),)" "ifeq (\$(OS_TARGET), darwin)" \ + --replace "-no_uuid" "" ''; NIX_LDFLAGS = lib.optionalString diff --git a/pkgs/development/compilers/fstar/default.nix b/pkgs/development/compilers/fstar/default.nix index 773a0dde281f4..3b3ad0ff55699 100644 --- a/pkgs/development/compilers/fstar/default.nix +++ b/pkgs/development/compilers/fstar/default.nix @@ -12,13 +12,13 @@ let - version = "2023.09.03"; + version = "2024.01.13"; src = fetchFromGitHub { owner = "FStarLang"; repo = "FStar"; rev = "v${version}"; - hash = "sha256-ymoP5DvaLdrdwJcnhZnLEvwNxUFzhkICajPyK4lvacc="; + hash = "sha256-xjSWDP8mSjLcn+0hsRpEdzsBgBR+mKCZB8yLmHl+WqE="; }; fstar-dune = ocamlPackages.callPackage ./dune.nix { inherit version src; }; diff --git a/pkgs/development/compilers/gcc/common/configure-flags.nix b/pkgs/development/compilers/gcc/common/configure-flags.nix index cbe38f1127f38..b8dccf9fcc575 100644 --- a/pkgs/development/compilers/gcc/common/configure-flags.nix +++ b/pkgs/development/compilers/gcc/common/configure-flags.nix @@ -135,6 +135,8 @@ let # We pick "/" path to effectively avoid sysroot offset and make it work # as a native case. "--with-build-sysroot=/" + # Same with the stdlibc++ headers embedded in the gcc output + "--with-gxx-include-dir=${placeholder "out"}/include/c++/${version}/" ] # Basic configuration @@ -249,6 +251,11 @@ let ++ lib.optionals (targetPlatform.isMips && targetPlatform.parsed.abi.name == "gnu" && lib.versions.major version == "12") [ "--disable-libsanitizer" ] + ++ lib.optionals targetPlatform.isAlpha [ + # Workaround build failures like: + # cc1: error: fp software completion requires '-mtrap-precision=i' [-Werror] + "--disable-werror" + ] ; in configureFlags diff --git a/pkgs/development/compilers/gcc/common/libgcc-buildstuff.nix b/pkgs/development/compilers/gcc/common/libgcc-buildstuff.nix index 239d60268007e..991efc20eee52 100644 --- a/pkgs/development/compilers/gcc/common/libgcc-buildstuff.nix +++ b/pkgs/development/compilers/gcc/common/libgcc-buildstuff.nix @@ -48,6 +48,6 @@ in # https://www.openwall.com/lists/musl/2022/11/09/3 # # 'parsed.cpu.family' won't be correct for every platform. -+ lib.optionalString (stdenv.targetPlatform.isLoongArch64 || stdenv.targetPlatform.isS390) '' ++ lib.optionalString (stdenv.targetPlatform.isLoongArch64 || stdenv.targetPlatform.isS390 || stdenv.targetPlatform.isAlpha) '' touch libgcc/config/${stdenv.targetPlatform.parsed.cpu.family}/crt{i,n}.S '' diff --git a/pkgs/development/compilers/gcc/patches/12/mangle-NIX_STORE-in-__FILE__.patch b/pkgs/development/compilers/gcc/patches/12/mangle-NIX_STORE-in-__FILE__.patch index 4e6c392ce76e3..51078925eeb84 100644 --- a/pkgs/development/compilers/gcc/patches/12/mangle-NIX_STORE-in-__FILE__.patch +++ b/pkgs/development/compilers/gcc/patches/12/mangle-NIX_STORE-in-__FILE__.patch @@ -12,9 +12,20 @@ inputs to be retained in runtime closure. Typical examples are `nix` -> `nlohmann_json` and `pipewire` -> `lttng-ust.dev`. +For this reason we want to remove the occurrences of hashes in the +expansion of `__FILE__`. `nuke-references` does it by replacing hashes +by `eeeeee...` but those paths are also used for debug symbols. It is +handy to be able to invert the transformation to go back to the original +store path for debuginfod servers. The chosen solution is to make the +hash uppercase: +- it does not trigger runtime references (except for all digit hashes, + which are unlikely enough) +- it visually looks like a bogus store path +- it is easy to find the original store path if required + Ideally we would like to use `-fmacro-prefix-map=` feature of `gcc` as: - -fmacro-prefix-map=/nix/store/$hash1-nlohmann-json-ver=/nix/store/eeee.eee-nlohmann-json-ver + -fmacro-prefix-map=/nix/store/$hash1-nlohmann-json-ver=/nix/store/$HASH1-nlohmann-json-ver -fmacro-prefix-map=/nix/... In practice it quickly exhausts argument length limit due to `gcc` @@ -25,9 +36,9 @@ is present in the environment. Tested as: - $ printf "# 0 \"/nix/store/01234567890123456789012345678901-pppppp-vvvvvvv\" \nconst char * f(void) { return __FILE__; }" | NIX_STORE=/nix/store ./gcc/xgcc -Bgcc -x c - -S -o - + $ printf "# 0 \"/nix/store/aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa-pppppp-vvvvvvv\" \nconst char * f(void) { return __FILE__; }" | NIX_STORE=/nix/store ./gcc/xgcc -Bgcc -x c - -S -o - ... - .string "/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-pppppp-vvvvvvv" + .string "/nix/store/AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-pppppp-vvvvvvv" ... Mangled successfully. @@ -43,7 +54,7 @@ Mangled successfully. /* Perform user-specified mapping of filename prefixes. Return the GC-allocated new name corresponding to FILENAME or FILENAME if no remapping was performed. */ -@@ -76,7 +79,30 @@ remap_filename (file_prefix_map *maps, const char *filename) +@@ -76,7 +79,31 @@ remap_filename (file_prefix_map *maps, const char *filename) if (filename_ncmp (filename, map->old_prefix, map->old_len) == 0) break; if (!map) @@ -51,8 +62,7 @@ Mangled successfully. + { + if (maps == macro_prefix_maps) + { -+ /* Remap all fo $NIX_STORE/.{32} paths to -+ * equivalent $NIX_STORE/e{32}. ++ /* Remap the 32 characters after $NIX_STORE/ to uppercase + * + * That way we avoid argument parameters explosion + * and still avoid embedding headers into runtime closure: @@ -66,7 +76,9 @@ Mangled successfully. + { + s = (char *) ggc_alloc_atomic (name_len + 1); + memcpy(s, name, name_len + 1); -+ memset(s + nix_store_len + 1, 'e', 32); ++ for (int i = nix_store_len + 1; i < nix_store_len + 1 + 32; i++) { ++ s[i] = TOUPPER(s[i]); ++ } + return s; + } + } @@ -75,7 +87,7 @@ Mangled successfully. name = filename + map->old_len; name_len = strlen (name) + 1; -@@ -90,7 +116,6 @@ remap_filename (file_prefix_map *maps, const char *filename) +@@ -90,7 +117,6 @@ remap_filename (file_prefix_map *maps, const char *filename) ignore it in DW_AT_producer (dwarf2out.cc). */ /* Linked lists of file_prefix_map structures. */ diff --git a/pkgs/development/compilers/gcc/patches/13/ICE-PR110280.patch b/pkgs/development/compilers/gcc/patches/13/ICE-PR110280.patch new file mode 100644 index 0000000000000..7338b3dd1ede3 --- /dev/null +++ b/pkgs/development/compilers/gcc/patches/13/ICE-PR110280.patch @@ -0,0 +1,60 @@ +From f4029de35fb1b293a4fd586574b1b4b73ddf7880 Mon Sep 17 00:00:00 2001 +From: Prathamesh Kulkarni <prathamesh.kulkarni@linaro.org> +Date: Wed, 26 Jul 2023 22:36:26 +0530 +Subject: [PATCH] [aarch64/match.pd] Fix ICE observed in PR110280. + +gcc/ChangeLog: + PR tree-optimization/110280 + * match.pd (vec_perm_expr(v, v, mask) -> v): Explicitly build vector + using build_vector_from_val with the element of input operand, and + mask's type if operand and mask's types don't match. + +gcc/testsuite/ChangeLog: + PR tree-optimization/110280 + * gcc.target/aarch64/sve/pr110280.c: New test. + +(cherry picked from commit 85d8e0d8d5342ec8b4e6a54e22741c30b33c6f04) +--- + gcc/match.pd | 9 ++++++++- + gcc/testsuite/gcc.target/aarch64/sve/pr110280.c | 12 ++++++++++++ + 2 files changed, 20 insertions(+), 1 deletion(-) + create mode 100644 gcc/testsuite/gcc.target/aarch64/sve/pr110280.c + +diff --git a/gcc/match.pd b/gcc/match.pd +index 9118244825054..c3bb4fbc0a7a2 100644 +--- a/gcc/match.pd ++++ b/gcc/match.pd +@@ -8292,7 +8292,14 @@ and, + + (simplify + (vec_perm vec_same_elem_p@0 @0 @1) +- @0) ++ (if (types_match (type, TREE_TYPE (@0))) ++ @0 ++ (with ++ { ++ tree elem = uniform_vector_p (@0); ++ } ++ (if (elem) ++ { build_vector_from_val (type, elem); })))) + + /* Push VEC_PERM earlier if that may help FMA perception (PR101895). */ + (simplify +diff --git a/gcc/testsuite/gcc.target/aarch64/sve/pr110280.c b/gcc/testsuite/gcc.target/aarch64/sve/pr110280.c +new file mode 100644 +index 0000000000000..d3279f383629f +--- /dev/null ++++ b/gcc/testsuite/gcc.target/aarch64/sve/pr110280.c +@@ -0,0 +1,12 @@ ++/* { dg-do compile } */ ++/* { dg-options "-O3 -fdump-tree-optimized" } */ ++ ++#include "arm_sve.h" ++ ++svuint32_t l() ++{ ++ _Alignas(16) const unsigned int lanes[4] = {0, 0, 0, 0}; ++ return svld1rq_u32(svptrue_b8(), lanes); ++} ++ ++/* { dg-final { scan-tree-dump-not "VEC_PERM_EXPR" "optimized" } } */ diff --git a/pkgs/development/compilers/gcc/patches/13/mangle-NIX_STORE-in-__FILE__.patch b/pkgs/development/compilers/gcc/patches/13/mangle-NIX_STORE-in-__FILE__.patch index ea0673219eb1f..351d6d0f764ba 100644 --- a/pkgs/development/compilers/gcc/patches/13/mangle-NIX_STORE-in-__FILE__.patch +++ b/pkgs/development/compilers/gcc/patches/13/mangle-NIX_STORE-in-__FILE__.patch @@ -12,9 +12,20 @@ inputs to be retained in runtime closure. Typical examples are `nix` -> `nlohmann_json` and `pipewire` -> `lttng-ust.dev`. +For this reason we want to remove the occurrences of hashes in the +expansion of `__FILE__`. `nuke-references` does it by replacing hashes +by `eeeeee...` but those paths are also used for debug symbols. It is +handy to be able to invert the transformation to go back to the original +store path for debuginfod servers. The chosen solution is to make the +hash uppercase: +- it does not trigger runtime references (except for all digit hashes, + which are unlikely enough) +- it visually looks like a bogus store path +- it is easy to find the original store path if required + Ideally we would like to use `-fmacro-prefix-map=` feature of `gcc` as: - -fmacro-prefix-map=/nix/store/$hash1-nlohmann-json-ver=/nix/store/eeee.eee-nlohmann-json-ver + -fmacro-prefix-map=/nix/store/$hash1-nlohmann-json-ver=/nix/store/$HASH1-nlohmann-json-ver -fmacro-prefix-map=/nix/... In practice it quickly exhausts argument length limit due to `gcc` @@ -25,9 +36,9 @@ is present in the environment. Tested as: - $ printf "# 0 \"/nix/store/01234567890123456789012345678901-pppppp-vvvvvvv\" \nconst char * f(void) { return __FILE__; }" | NIX_STORE=/nix/store ./gcc/xgcc -Bgcc -x c - -S -o - + $ printf "# 0 \"/nix/store/aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa-pppppp-vvvvvvv\" \nconst char * f(void) { return __FILE__; }" | NIX_STORE=/nix/store ./gcc/xgcc -Bgcc -x c - -S -o - ... - .string "/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-pppppp-vvvvvvv" + .string "/nix/store/AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-pppppp-vvvvvvv" ... Mangled successfully. @@ -43,14 +54,13 @@ Mangled successfully. /* Perform user-specified mapping of filename prefixes. Return the GC-allocated new name corresponding to FILENAME or FILENAME if no remapping was performed. */ -@@ -102,6 +105,29 @@ remap_filename (file_prefix_map *maps, const char *filename) +@@ -102,6 +105,30 @@ remap_filename (file_prefix_map *maps, const char *filename) break; if (!map) { + if (maps == macro_prefix_maps) + { -+ /* Remap all fo $NIX_STORE/.{32} paths to -+ * equivalent $NIX_STORE/e{32}. ++ /* Remap all fo $NIX_STORE/.{32} paths to uppercase + * + * That way we avoid argument parameters explosion + * and still avoid embedding headers into runtime closure: @@ -64,7 +74,9 @@ Mangled successfully. + { + s = (char *) ggc_alloc_atomic (name_len + 1); + memcpy(s, name, name_len + 1); -+ memset(s + nix_store_len + 1, 'e', 32); ++ for (int i = nix_store_len + 1; i < nix_store_len + 1 + 32; i++) { ++ s[i] = TOUPPER(s[i]); ++ } + if (realname != filename) + free (const_cast <char *> (realname)); + return s; @@ -73,7 +85,7 @@ Mangled successfully. if (realname != filename) free (const_cast <char *> (realname)); return filename; -@@ -124,7 +150,6 @@ remap_filename (file_prefix_map *maps, const char *filename) +@@ -124,7 +151,6 @@ remap_filename (file_prefix_map *maps, const char *filename) ignore it in DW_AT_producer (gen_command_line_string in opts.cc). */ /* Linked lists of file_prefix_map structures. */ @@ -81,4 +93,3 @@ Mangled successfully. static file_prefix_map *debug_prefix_maps; /* -fdebug-prefix-map */ static file_prefix_map *profile_prefix_maps; /* -fprofile-prefix-map */ - diff --git a/pkgs/development/compilers/gcc/patches/default.nix b/pkgs/development/compilers/gcc/patches/default.nix index 55636b8ab51cd..9cb2f701df577 100644 --- a/pkgs/development/compilers/gcc/patches/default.nix +++ b/pkgs/development/compilers/gcc/patches/default.nix @@ -74,6 +74,7 @@ in ++ optional langFortran (if atLeast12 then ./gcc-12-gfortran-driving.patch else ./gfortran-driving.patch) ++ optional atLeast7 ./ppc-musl.patch ++ optional is12 ./12/lambda-ICE-PR109241.patch # backport ICE fix on ccache code +++ optional is13 ./13/ICE-PR110280.patch # backport ICE fix on const_unop ++ optional (atLeast9 && langD) ./libphobos.patch diff --git a/pkgs/development/compilers/ghc/8.10.2-binary.nix b/pkgs/development/compilers/ghc/8.10.2-binary.nix deleted file mode 100644 index c8d645cfa361a..0000000000000 --- a/pkgs/development/compilers/ghc/8.10.2-binary.nix +++ /dev/null @@ -1,457 +0,0 @@ -{ lib, stdenv -, fetchurl, perl, gcc -, ncurses5 -, ncurses6, gmp, libiconv, numactl -, llvmPackages -, coreutils -, targetPackages - - # minimal = true; will remove files that aren't strictly necessary for - # regular builds and GHC bootstrapping. - # This is "useful" for staying within hydra's output limits for at least the - # aarch64-linux architecture. -, minimal ? false -}: - -# Prebuilt only does native -assert stdenv.targetPlatform == stdenv.hostPlatform; - -let - downloadsUrl = "https://downloads.haskell.org/ghc"; - - version = "8.10.2"; - - # Information about available bindists that we use in the build. - # - # # Bindist library checking - # - # The field `archSpecificLibraries` also provides a way for us get notified - # early when the upstream bindist changes its dependencies (e.g. because a - # newer Debian version is used that uses a new `ncurses` version). - # - # Usage: - # - # * You can find the `fileToCheckFor` of libraries by running `readelf -d` - # on the compiler binary (`exePathForLibraryCheck`). - # * To skip library checking for an architecture, - # set `exePathForLibraryCheck = null`. - # * To skip file checking for a specific arch specfic library, - # set `fileToCheckFor = null`. - ghcBinDists = { - # Binary distributions for the default libc (e.g. glibc, or libSystem on Darwin) - # nixpkgs uses for the respective system. - defaultLibc = { - i686-linux = { - variantSuffix = ""; - src = { - url = "${downloadsUrl}/${version}/ghc-${version}-i386-deb9-linux.tar.xz"; - sha256 = "0bvwisl4w0z5z8z0da10m9sv0mhm9na2qm43qxr8zl23mn32mblx"; - }; - exePathForLibraryCheck = "ghc/stage2/build/tmp/ghc-stage2"; - archSpecificLibraries = [ - { nixPackage = gmp; fileToCheckFor = null; } - # The i686-linux bindist provided by GHC HQ is currently built on Debian 9, - # which link it against `libtinfo.so.5` (ncurses 5). - # Other bindists are linked `libtinfo.so.6` (ncurses 6). - { nixPackage = ncurses5; fileToCheckFor = "libtinfo.so.5"; } - ]; - }; - x86_64-linux = { - variantSuffix = ""; - src = { - url = "${downloadsUrl}/${version}/ghc-${version}-x86_64-deb10-linux.tar.xz"; - sha256 = "0chnzy9j23b2wa8clx5arwz8wnjfxyjmz9qkj548z14cqf13slcl"; - }; - exePathForLibraryCheck = "ghc/stage2/build/tmp/ghc-stage2"; - archSpecificLibraries = [ - { nixPackage = gmp; fileToCheckFor = null; } - { nixPackage = ncurses6; fileToCheckFor = "libtinfo.so.6"; } - ]; - }; - armv7l-linux = { - variantSuffix = ""; - src = { - url = "${downloadsUrl}/${version}/ghc-${version}-armv7-deb10-linux.tar.xz"; - sha256 = "1j41cq5d3rmlgz7hzw8f908fs79gc5mn3q5wz277lk8zdf19g75v"; - }; - exePathForLibraryCheck = "ghc/stage2/build/tmp/ghc-stage2"; - archSpecificLibraries = [ - { nixPackage = gmp; fileToCheckFor = null; } - { nixPackage = ncurses6; fileToCheckFor = "libtinfo.so.6"; } - ]; - }; - aarch64-linux = { - variantSuffix = ""; - src = { - url = "${downloadsUrl}/${version}/ghc-${version}-aarch64-deb10-linux.tar.xz"; - sha256 = "14smwl3741ixnbgi0l51a7kh7xjkiannfqx15b72svky0y4l3wjw"; - }; - exePathForLibraryCheck = "ghc/stage2/build/tmp/ghc-stage2"; - archSpecificLibraries = [ - { nixPackage = gmp; fileToCheckFor = null; } - { nixPackage = ncurses6; fileToCheckFor = "libtinfo.so.6"; } - { nixPackage = numactl; fileToCheckFor = null; } - ]; - }; - x86_64-darwin = { - variantSuffix = ""; - src = { - url = "${downloadsUrl}/${version}/ghc-${version}-x86_64-apple-darwin.tar.xz"; - sha256 = "1hngyq14l4f950hzhh2d204ca2gfc98pc9xdasxihzqd1jq75dzd"; - }; - exePathForLibraryCheck = null; # we don't have a library check for darwin yet - archSpecificLibraries = [ - { nixPackage = gmp; fileToCheckFor = null; } - { nixPackage = ncurses6; fileToCheckFor = null; } - { nixPackage = libiconv; fileToCheckFor = null; } - ]; - }; - }; - # Binary distributions for the musl libc for the respective system. - musl = { - x86_64-linux = { - variantSuffix = "-musl"; - src = { - url = "${downloadsUrl}/${version}/ghc-${version}-x86_64-alpine3.10-linux-integer-simple.tar.xz"; - sha256 = "0xpcbyaxqyhbl6f0i3s4rp2jm67nqpkfh2qlbj3i2fiaix89ml0l"; - }; - exePathForLibraryCheck = "bin/ghc"; - archSpecificLibraries = [ - { nixPackage = gmp; fileToCheckFor = null; } - # In contrast to glibc builds, the musl-bindist uses `libncursesw.so.*` - # instead of `libtinfo.so.*.` - { nixPackage = ncurses6; fileToCheckFor = "libncursesw.so.6"; } - ]; - isHadrian = true; - }; - }; - }; - - distSetName = if stdenv.hostPlatform.isMusl then "musl" else "defaultLibc"; - - binDistUsed = ghcBinDists.${distSetName}.${stdenv.hostPlatform.system} - or (throw "cannot bootstrap GHC on this platform ('${stdenv.hostPlatform.system}' with libc '${distSetName}')"); - - useLLVM = !stdenv.targetPlatform.isx86; - - libPath = - lib.makeLibraryPath ( - # Add arch-specific libraries. - map ({ nixPackage, ... }: nixPackage) binDistUsed.archSpecificLibraries - ); - - libEnvVar = lib.optionalString stdenv.hostPlatform.isDarwin "DY" - + "LD_LIBRARY_PATH"; - - runtimeDeps = [ - targetPackages.stdenv.cc - targetPackages.stdenv.cc.bintools - coreutils # for cat - ] - ++ lib.optionals useLLVM [ - (lib.getBin llvmPackages.llvm) - ] - # On darwin, we need unwrapped bintools as well (for otool) - ++ lib.optionals (stdenv.targetPlatform.linker == "cctools") [ - targetPackages.stdenv.cc.bintools.bintools - ]; - -in - -stdenv.mkDerivation rec { - inherit version; - pname = "ghc-binary${binDistUsed.variantSuffix}"; - - src = fetchurl binDistUsed.src; - - # Note that for GHC 8.10 versions <= 8.10.5, the GHC HQ musl bindist - # has a `gmp` dependency: - # https://gitlab.haskell.org/ghc/ghc/-/commit/8306501020cd66f683ad9c215fa8e16c2d62357d - # Related nixpkgs issues: - # * https://github.com/NixOS/nixpkgs/pull/130441#issuecomment-922452843 - - nativeBuildInputs = [ perl ]; - propagatedBuildInputs = - # Because musl bindists currently provide no way to tell where - # libgmp is (see not [musl bindists have no .buildinfo]), we need - # to propagate `gmp`, otherwise programs built by this ghc will - # fail linking with `cannot find -lgmp` errors. - # Concrete cases are listed in: - # https://github.com/NixOS/nixpkgs/pull/130441#issuecomment-922459988 - # - # Also, as of writing, the release pages of musl bindists claim - # that they use `integer-simple` and do not require `gmp`; however - # that is incorrect, so `gmp` is required until a release has been - # made that includes https://gitlab.haskell.org/ghc/ghc/-/issues/20059. - # (Note that for packaging the `-binary` compiler, nixpkgs does not care - # about whether or not `gmp` is used; this comment is just here to explain - # why the `gmp` dependency exists despite what the release page says.) - # - # For GHC >= 8.10.6, `gmp` was switched out for `integer-simple` - # (https://gitlab.haskell.org/ghc/ghc/-/commit/8306501020cd66f683ad9c215fa8e16c2d62357d), - # fixing the above-mentioned release issue, - # and for GHC >= 9.* it is not clear as of writing whether that switch - # will be made there too. - lib.optionals stdenv.hostPlatform.isMusl [ gmp ]; # musl bindist needs this - - # Set LD_LIBRARY_PATH or equivalent so that the programs running as part - # of the bindist installer can find the libraries they expect. - # Cannot patchelf beforehand due to relative RPATHs that anticipate - # the final install location. - ${libEnvVar} = libPath; - - postUnpack = - # Verify our assumptions of which `libtinfo.so` (ncurses) version is used, - # so that we know when ghc bindists upgrade that and we need to update the - # version used in `libPath`. - lib.optionalString - (binDistUsed.exePathForLibraryCheck != null) - # Note the `*` glob because some GHCs have a suffix when unpacked, e.g. - # the musl bindist has dir `ghc-VERSION-x86_64-unknown-linux/`. - # As a result, don't shell-quote this glob when splicing the string. - (let buildExeGlob = ''ghc-${version}*/"${binDistUsed.exePathForLibraryCheck}"''; in - lib.concatStringsSep "\n" [ - ('' - shopt -u nullglob - echo "Checking that ghc binary exists in bindist at ${buildExeGlob}" - if ! test -e ${buildExeGlob}; then - echo >&2 "GHC binary ${binDistUsed.exePathForLibraryCheck} could not be found in the bindist build directory (at ${buildExeGlob}) for arch ${stdenv.hostPlatform.system}, please check that ghcBinDists correctly reflect the bindist dependencies!"; exit 1; - fi - '') - (lib.concatMapStringsSep - "\n" - ({ fileToCheckFor, nixPackage }: - lib.optionalString (fileToCheckFor != null) '' - echo "Checking bindist for ${fileToCheckFor} to ensure that is still used" - if ! readelf -d ${buildExeGlob} | grep "${fileToCheckFor}"; then - echo >&2 "File ${fileToCheckFor} could not be found in ${binDistUsed.exePathForLibraryCheck} for arch ${stdenv.hostPlatform.system}, please check that ghcBinDists correctly reflect the bindist dependencies!"; exit 1; - fi - - echo "Checking that the nix package ${nixPackage} contains ${fileToCheckFor}" - if ! test -e "${lib.getLib nixPackage}/lib/${fileToCheckFor}"; then - echo >&2 "Nix package ${nixPackage} did not contain ${fileToCheckFor} for arch ${stdenv.hostPlatform.system}, please check that ghcBinDists correctly reflect the bindist dependencies!"; exit 1; - fi - '' - ) - binDistUsed.archSpecificLibraries - ) - ]) - # GHC has dtrace probes, which causes ld to try to open /usr/lib/libdtrace.dylib - # during linking - + lib.optionalString stdenv.isDarwin '' - export NIX_LDFLAGS+=" -no_dtrace_dof" - # not enough room in the object files for the full path to libiconv :( - for exe in $(find . -type f -executable); do - isScript $exe && continue - ln -fs ${libiconv}/lib/libiconv.dylib $(dirname $exe)/libiconv.dylib - install_name_tool -change /usr/lib/libiconv.2.dylib @executable_path/libiconv.dylib -change /usr/local/lib/gcc/6/libgcc_s.1.dylib ${gcc.cc.lib}/lib/libgcc_s.1.dylib $exe - done - '' + - - # Some scripts used during the build need to have their shebangs patched - '' - patchShebangs ghc-${version}/utils/ - patchShebangs ghc-${version}/configure - test -d ghc-${version}/inplace/bin && \ - patchShebangs ghc-${version}/inplace/bin - '' + - # We have to patch the GMP paths for the integer-gmp package. - # Note [musl bindists have no .buildinfo] - # Note that musl bindists do not contain them; unclear if that's intended; - # see: https://gitlab.haskell.org/ghc/ghc/-/issues/20073#note_363231 - '' - find . -name integer-gmp.buildinfo \ - -exec sed -i "s@extra-lib-dirs: @extra-lib-dirs: ${gmp.out}/lib@" {} \; - '' + lib.optionalString stdenv.isDarwin '' - find . -name base.buildinfo \ - -exec sed -i "s@extra-lib-dirs: @extra-lib-dirs: ${libiconv}/lib@" {} \; - '' + - # aarch64 does HAVE_NUMA so -lnuma requires it in library-dirs in rts/package.conf.in - # FFI_LIB_DIR is a good indication of places it must be needed. - lib.optionalString stdenv.hostPlatform.isAarch64 '' - find . -name package.conf.in \ - -exec sed -i "s@FFI_LIB_DIR@FFI_LIB_DIR ${numactl.out}/lib@g" {} \; - '' + - # Rename needed libraries and binaries, fix interpreter - lib.optionalString stdenv.isLinux '' - find . -type f -executable -exec patchelf \ - --interpreter ${stdenv.cc.bintools.dynamicLinker} {} \; - '' + - # The hadrian install Makefile uses 'xxx' as a temporary placeholder in path - # substitution. Which can break the build if the store path / prefix happens - # to contain this string. This will be fixed with 9.4 bindists. - # https://gitlab.haskell.org/ghc/ghc/-/issues/21402 - '' - # Detect hadrian Makefile by checking for the target that has the problem - if grep '^update_package_db' ghc-${version}*/Makefile > /dev/null; then - echo Hadrian bindist, applying workaround for xxx path substitution. - # based on https://gitlab.haskell.org/ghc/ghc/-/commit/dd5fecb0e2990b192d92f4dfd7519ecb33164fad.patch - substituteInPlace ghc-${version}*/Makefile --replace 'xxx' '\0xxx\0' - else - echo Not a hadrian bindist, not applying xxx path workaround. - fi - ''; - - # fix for `configure: error: Your linker is affected by binutils #16177` - preConfigure = lib.optionalString - stdenv.targetPlatform.isAarch32 - "LD=ld.gold"; - - configurePlatforms = [ ]; - configureFlags = [ - "--with-gmp-includes=${lib.getDev gmp}/include" - # Note `--with-gmp-libraries` does nothing for GHC bindists: - # https://gitlab.haskell.org/ghc/ghc/-/merge_requests/6124 - ] ++ lib.optional stdenv.isDarwin "--with-gcc=${./gcc-clang-wrapper.sh}" - # From: https://github.com/NixOS/nixpkgs/pull/43369/commits - ++ lib.optional stdenv.hostPlatform.isMusl "--disable-ld-override"; - - # No building is necessary, but calling make without flags ironically - # calls install-strip ... - dontBuild = true; - - # Patch scripts to include runtime dependencies in $PATH. - postInstall = '' - for i in "$out/bin/"*; do - test ! -h "$i" || continue - isScript "$i" || continue - sed -i -e '2i export PATH="${lib.makeBinPath runtimeDeps}:$PATH"' "$i" - done - ''; - - # Apparently necessary for the ghc Alpine (musl) bindist: - # When we strip, and then run the - # patchelf --set-rpath "${libPath}:$(patchelf --print-rpath $p)" $p - # below, running ghc (e.g. during `installCheckPhase)` gives some apparently - # corrupted rpath or whatever makes the loader work on nonsensical strings: - # running install tests - # Error relocating /nix/store/...-ghc-8.10.2-binary/lib/ghc-8.10.5/bin/ghc: : symbol not found - # Error relocating /nix/store/...-ghc-8.10.2-binary/lib/ghc-8.10.5/bin/ghc: ir6zf6c9f86pfx8sr30n2vjy-ghc-8.10.2-binary/lib/ghc-8.10.5/bin/../lib/x86_64-linux-ghc-8.10.5/libHSexceptions-0.10.4-ghc8.10.5.so: symbol not found - # Error relocating /nix/store/...-ghc-8.10.2-binary/lib/ghc-8.10.5/bin/ghc: y/lib/ghc-8.10.5/bin/../lib/x86_64-linux-ghc-8.10.5/libHStemplate-haskell-2.16.0.0-ghc8.10.5.so: symbol not found - # Error relocating /nix/store/...-ghc-8.10.2-binary/lib/ghc-8.10.5/bin/ghc: 8.10.5/libHStemplate-haskell-2.16.0.0-ghc8.10.5.so: symbol not found - # Error relocating /nix/store/...-ghc-8.10.2-binary/lib/ghc-8.10.5/bin/ghc: �: symbol not found - # Error relocating /nix/store/...-ghc-8.10.2-binary/lib/ghc-8.10.5/bin/ghc: �?: symbol not found - # Error relocating /nix/store/...-ghc-8.10.2-binary/lib/ghc-8.10.5/bin/ghc: 64-linux-ghc-8.10.5/libHSexceptions-0.10.4-ghc8.10.5.so: symbol not found - # This is extremely bogus and should be investigated. - dontStrip = if stdenv.hostPlatform.isMusl then true else false; # `if` for explicitness - - # On Linux, use patchelf to modify the executables so that they can - # find editline/gmp. - postFixup = lib.optionalString stdenv.isLinux - (if stdenv.hostPlatform.isAarch64 then - # Keep rpath as small as possible on aarch64 for patchelf#244. All Elfs - # are 2 directories deep from $out/lib, so pooling symlinks there makes - # a short rpath. - '' - (cd $out/lib; ln -s ${ncurses6.out}/lib/libtinfo.so.6) - (cd $out/lib; ln -s ${gmp.out}/lib/libgmp.so.10) - (cd $out/lib; ln -s ${numactl.out}/lib/libnuma.so.1) - for p in $(find "$out/lib" -type f -name "*\.so*"); do - (cd $out/lib; ln -s $p) - done - - for p in $(find "$out/lib" -type f -executable); do - if isELF "$p"; then - echo "Patchelfing $p" - patchelf --set-rpath "\$ORIGIN:\$ORIGIN/../.." $p - fi - done - '' - else - '' - for p in $(find "$out" -type f -executable); do - if isELF "$p"; then - echo "Patchelfing $p" - patchelf --set-rpath "${libPath}:$(patchelf --print-rpath $p)" $p - fi - done - '') + lib.optionalString stdenv.isDarwin '' - # not enough room in the object files for the full path to libiconv :( - for exe in $(find "$out" -type f -executable); do - isScript $exe && continue - ln -fs ${libiconv}/lib/libiconv.dylib $(dirname $exe)/libiconv.dylib - install_name_tool -change /usr/lib/libiconv.2.dylib @executable_path/libiconv.dylib -change /usr/local/lib/gcc/6/libgcc_s.1.dylib ${gcc.cc.lib}/lib/libgcc_s.1.dylib $exe - done - - for file in $(find "$out" -name setup-config); do - substituteInPlace $file --replace /usr/bin/ranlib "$(type -P ranlib)" - done - '' + - lib.optionalString minimal '' - # Remove profiling files - find $out -type f -name '*.p_o' -delete - find $out -type f -name '*.p_hi' -delete - find $out -type f -name '*_p.a' -delete - # `-f` because e.g. musl bindist does not have this file. - rm -f $out/lib/ghc-*/bin/ghc-iserv-prof - # Hydra will redistribute this derivation, so we have to keep the docs for - # legal reasons (retaining the legal notices etc) - # As a last resort we could unpack the docs separately and symlink them in. - # They're in $out/share/{doc,man}. - ''; - - # In nixpkgs, musl based builds currently enable `pie` hardening by default - # (see `defaultHardeningFlags` in `make-derivation.nix`). - # But GHC cannot currently produce outputs that are ready for `-pie` linking. - # Thus, disable `pie` hardening, otherwise `recompile with -fPIE` errors appear. - # See: - # * https://github.com/NixOS/nixpkgs/issues/129247 - # * https://gitlab.haskell.org/ghc/ghc/-/issues/19580 - hardeningDisable = lib.optional stdenv.targetPlatform.isMusl "pie"; - - doInstallCheck = true; - installCheckPhase = '' - # Sanity check, can ghc create executables? - cd $TMP - mkdir test-ghc; cd test-ghc - cat > main.hs << EOF - {-# LANGUAGE TemplateHaskell #-} - module Main where - main = putStrLn \$([|"yes"|]) - EOF - # can't use env -i here because otherwise we don't find -lgmp on musl - env ${libEnvVar}= PATH= \ - $out/bin/ghc --make main.hs || exit 1 - echo compilation ok - [ $(./main) == "yes" ] - ''; - - passthru = { - targetPrefix = ""; - enableShared = true; - - inherit llvmPackages; - - # Our Cabal compiler name - haskellCompilerName = "ghc-${version}"; - } - # We duplicate binDistUsed here since we have a sensible default even if no bindist is avaible, - # this makes sure that getting the `meta` attribute doesn't throw even on unsupported platforms. - // lib.optionalAttrs (ghcBinDists.${distSetName}.${stdenv.hostPlatform.system}.isHadrian or false) { - # Normal GHC derivations expose the hadrian derivation used to build them - # here. In the case of bindists we just make sure that the attribute exists, - # as it is used for checking if a GHC derivation has been built with hadrian. - # The isHadrian mechanism will become obsolete with GHCs that use hadrian - # exclusively, i.e. 9.6 (and 9.4?). - hadrian = null; - }; - - meta = rec { - homepage = "http://haskell.org/ghc"; - description = "The Glasgow Haskell Compiler"; - license = lib.licenses.bsd3; - # HACK: since we can't encode the libc / abi in platforms, we need - # to make the platform list dependent on the evaluation platform - # in order to avoid eval errors with musl which supports less - # platforms than the default libcs (i. e. glibc / libSystem). - # This is done for the benefit of Hydra, so `packagePlatforms` - # won't return any platforms that would cause an evaluation - # failure for `pkgsMusl.haskell.compiler.ghc8102Binary`, as - # long as the evaluator runs on a platform that supports - # `pkgsMusl`. - platforms = builtins.attrNames ghcBinDists.${distSetName}; - maintainers = with lib.maintainers; [ - guibou - ] ++ lib.teams.haskell.members; - }; -} diff --git a/pkgs/development/compilers/ghc/8.10.7-binary.nix b/pkgs/development/compilers/ghc/8.10.7-binary.nix index 3376671d65b41..16642e56bfd92 100644 --- a/pkgs/development/compilers/ghc/8.10.7-binary.nix +++ b/pkgs/development/compilers/ghc/8.10.7-binary.nix @@ -442,7 +442,7 @@ stdenv.mkDerivation rec { # platforms than the default libcs (i. e. glibc / libSystem). # This is done for the benefit of Hydra, so `packagePlatforms` # won't return any platforms that would cause an evaluation - # failure for `pkgsMusl.haskell.compiler.ghc8102Binary`, as + # failure for `pkgsMusl.haskell.compiler.ghc8107Binary`, as # long as the evaluator runs on a platform that supports # `pkgsMusl`. platforms = builtins.attrNames ghcBinDists.${distSetName}; diff --git a/pkgs/development/compilers/ghc/8.6.5-binary.nix b/pkgs/development/compilers/ghc/8.6.5-binary.nix index 5f9d6c824d428..d66f47b661a5d 100644 --- a/pkgs/development/compilers/ghc/8.6.5-binary.nix +++ b/pkgs/development/compilers/ghc/8.6.5-binary.nix @@ -222,7 +222,7 @@ stdenv.mkDerivation rec { "x86_64-darwin" "powerpc64le-linux" ]; - # build segfaults, use ghc8102Binary which has proper musl support instead + # build segfaults, use ghc8107Binary which has proper musl support instead broken = stdenv.hostPlatform.isMusl; maintainers = with lib.maintainers; [ guibou diff --git a/pkgs/development/compilers/ghc/9.6.4.nix b/pkgs/development/compilers/ghc/9.6.4.nix new file mode 100644 index 0000000000000..40a2261180e21 --- /dev/null +++ b/pkgs/development/compilers/ghc/9.6.4.nix @@ -0,0 +1,4 @@ +import ./common-hadrian.nix { + version = "9.6.4"; + sha256 = "10bf25b8b07174fdd9868b5c0c56c17c0ef1edcb6247b4b864be933651bfd4c0"; +} diff --git a/pkgs/development/compilers/ghc/ghc-8.8.4-sphinx-6.0.patch b/pkgs/development/compilers/ghc/ghc-8.8.4-sphinx-6.0.patch deleted file mode 100644 index c20c62f9cf6f4..0000000000000 --- a/pkgs/development/compilers/ghc/ghc-8.8.4-sphinx-6.0.patch +++ /dev/null @@ -1,13 +0,0 @@ -diff --git a/docs/users_guide/ghc_config.py.in b/docs/users_guide/ghc_config.py.in -index 2670ad3cf1..d2f9d85c31 100644 ---- a/docs/users_guide/ghc_config.py.in -+++ b/docs/users_guide/ghc_config.py.in -@@ -1,6 +1,6 @@ - extlinks = { -- 'ghc-ticket': ('https://gitlab.haskell.org/ghc/ghc/issues/%s', 'Issue #'), -- 'ghc-wiki': ('https://gitlab.haskell.org/ghc/ghc/wikis/%s', 'GHC Wiki'), -+ 'ghc-ticket': ('https://gitlab.haskell.org/ghc/ghc/issues/%s', 'Issue %s'), -+ 'ghc-wiki': ('https://gitlab.haskell.org/ghc/ghc/wikis/%s', 'GHC Wiki %s'), - } - - libs_base_uri = '../libraries' diff --git a/pkgs/development/compilers/ghc/rename-numa-api-call.patch b/pkgs/development/compilers/ghc/rename-numa-api-call.patch deleted file mode 100644 index 747d7a81a11ef..0000000000000 --- a/pkgs/development/compilers/ghc/rename-numa-api-call.patch +++ /dev/null @@ -1,32 +0,0 @@ -diff --git a/rts/win32/OSMem.c b/rts/win32/OSMem.c ---- a/rts/win32/OSMem.c -+++ b/rts/win32/OSMem.c -@@ -41,7 +41,7 @@ static block_rec* free_blocks = NULL; - typedef LPVOID(WINAPI *VirtualAllocExNumaProc)(HANDLE, LPVOID, SIZE_T, DWORD, DWORD, DWORD); - - /* Cache NUMA API call. */ --VirtualAllocExNumaProc VirtualAllocExNuma; -+VirtualAllocExNumaProc _VirtualAllocExNuma; - - void - osMemInit(void) -@@ -52,8 +52,8 @@ osMemInit(void) - /* Resolve and cache VirtualAllocExNuma. */ - if (osNumaAvailable() && RtsFlags.GcFlags.numa) - { -- VirtualAllocExNuma = (VirtualAllocExNumaProc)GetProcAddress(GetModuleHandleW(L"kernel32"), "VirtualAllocExNuma"); -- if (!VirtualAllocExNuma) -+ _VirtualAllocExNuma = (VirtualAllocExNumaProc)(void*)GetProcAddress(GetModuleHandleW(L"kernel32"), "VirtualAllocExNuma"); -+ if (!_VirtualAllocExNuma) - { - sysErrorBelch( - "osBindMBlocksToNode: VirtualAllocExNuma does not exist. How did you get this far?"); -@@ -569,7 +569,7 @@ void osBindMBlocksToNode( - On windows also -xb is broken, it does nothing so that can't - be used to tweak it (see #12577). So for now, just let the OS decide. - */ -- temp = VirtualAllocExNuma( -+ temp = _VirtualAllocExNuma( - GetCurrentProcess(), - NULL, // addr? See base memory - size, diff --git a/pkgs/development/compilers/ghc/sphinx-4-configuration.patch b/pkgs/development/compilers/ghc/sphinx-4-configuration.patch deleted file mode 100644 index 884a0bb39a5fa..0000000000000 --- a/pkgs/development/compilers/ghc/sphinx-4-configuration.patch +++ /dev/null @@ -1,11 +0,0 @@ ---- ghc-8.10.4/docs/users_guide/conf.py.orig 2021-06-21 13:46:34.196383559 +0200 -+++ ghc-8.10.4/docs/users_guide/conf.py 2021-06-21 13:46:54.839349941 +0200 -@@ -100,7 +100,7 @@ - latex_elements = { - 'inputenc': '', - 'utf8extra': '', -- 'preamble': ''' -+ 'preamble': r''' - \usepackage{fontspec} - \usepackage{makeidx} - \setsansfont{DejaVu Sans} diff --git a/pkgs/development/compilers/gleam/default.nix b/pkgs/development/compilers/gleam/default.nix index ff3fa0de1b725..8571950fef3a5 100644 --- a/pkgs/development/compilers/gleam/default.nix +++ b/pkgs/development/compilers/gleam/default.nix @@ -12,13 +12,13 @@ rustPlatform.buildRustPackage rec { pname = "gleam"; - version = "0.33.0"; + version = "0.34.0"; src = fetchFromGitHub { owner = "gleam-lang"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-fAI4GKdMg2FlNLqXtqAEpmvi63RApRZdQEWPqEf+Dyw="; + hash = "sha256-cqJNNSN3x2tr6/i7kXAlvIaU9SfyPWBE4c6twc/p1lY="; }; nativeBuildInputs = [ git pkg-config ]; @@ -26,7 +26,7 @@ rustPlatform.buildRustPackage rec { buildInputs = [ openssl ] ++ lib.optionals stdenv.isDarwin [ Security SystemConfiguration ]; - cargoHash = "sha256-Ogjt6lIOvoTPWQhtNFqMgACNrH/27+8JRDlFb//9oUg="; + cargoHash = "sha256-mCMfVYbpUik8oc7TLLAXPBmBUchy+quAZLmd9pqCZ7Y="; passthru.updateScript = nix-update-script { }; diff --git a/pkgs/development/compilers/glslang/default.nix b/pkgs/development/compilers/glslang/default.nix index ff55201ebd03f..5387eb15b713b 100644 --- a/pkgs/development/compilers/glslang/default.nix +++ b/pkgs/development/compilers/glslang/default.nix @@ -9,13 +9,13 @@ }: stdenv.mkDerivation rec { pname = "glslang"; - version = "13.1.1"; + version = "14.0.0"; src = fetchFromGitHub { owner = "KhronosGroup"; repo = "glslang"; rev = version; - hash = "sha256-fuzNsVYdnThMzd4tLN/sTbCBXg6qXKLDJRziOKyOBGg="; + hash = "sha256-7kIIU45pe+IF7lGltpIKSvQBmcXR+TWFvmx7ztMNrpc="; }; # These get set at all-packages, keep onto them for child drvs diff --git a/pkgs/development/compilers/go/1.21.nix b/pkgs/development/compilers/go/1.21.nix index 5dec10e3e477f..06391b1740a6e 100644 --- a/pkgs/development/compilers/go/1.21.nix +++ b/pkgs/development/compilers/go/1.21.nix @@ -46,11 +46,11 @@ let in stdenv.mkDerivation (finalAttrs: { pname = "go"; - version = "1.21.5"; + version = "1.21.6"; src = fetchurl { url = "https://go.dev/dl/go${finalAttrs.version}.src.tar.gz"; - hash = "sha256-KFy730tubmLtWPNw8/bYwwgl1uVsWFPGbTwjvNsJ2xk="; + hash = "sha256-Ekkmpi5F942qu67bnAEdl2MxhqM8I4/8HiUyDAIEYkg="; }; strictDeps = true; diff --git a/pkgs/development/compilers/go/1.19.nix b/pkgs/development/compilers/go/1.22.nix index d3f60b8f6e982..ac02062a41f54 100644 --- a/pkgs/development/compilers/go/1.19.nix +++ b/pkgs/development/compilers/go/1.22.nix @@ -1,6 +1,5 @@ { lib , stdenv -, fetchpatch , fetchurl , tzdata , substituteAll @@ -14,14 +13,14 @@ , threadsCross , testers , skopeo -, buildGo119Module +, buildGo122Module }: let - useGccGoBootstrap = stdenv.buildPlatform.isMusl || stdenv.buildPlatform.isRiscV; - goBootstrap = if useGccGoBootstrap then buildPackages.gccgo12 else buildPackages.callPackage ./bootstrap116.nix { }; + useGccGoBootstrap = stdenv.buildPlatform.isMusl; + goBootstrap = if useGccGoBootstrap then buildPackages.gccgo12 else buildPackages.callPackage ./bootstrap121.nix { }; - skopeoTest = skopeo.override { buildGoModule = buildGo119Module; }; + skopeoTest = skopeo.override { buildGoModule = buildGo122Module; }; goarch = platform: { "aarch64" = "arm64"; @@ -47,11 +46,11 @@ let in stdenv.mkDerivation (finalAttrs: { pname = "go"; - version = "1.19.13"; + version = "1.22rc2"; src = fetchurl { url = "https://go.dev/dl/go${finalAttrs.version}.src.tar.gz"; - hash = "sha256-zPNrU/sAJKAXNTw92yLB8AvHqAc8aqx5BC2iTuNENNM="; + hash = "sha256-0ZOofbgiOCHh7oke3+42yOrJugz4PkLt5keVp96Kfyc="; }; strictDeps = true; @@ -87,13 +86,7 @@ stdenv.mkDerivation (finalAttrs: { inherit tzdata; }) ./remove-tools-1.11.patch - ./go_no_vendor_checks-1.16.patch - - # runtime: support riscv64 SV57 mode - (fetchpatch { - url = "https://github.com/golang/go/commit/1e3c19f3fee12e5e2b7802a54908a4d4d03960da.patch"; - sha256 = "sha256-mk/9gXwQEcAkiRemF6GiNU0c0fhDR29/YcKgQR7ONTA="; - }) + ./go_no_vendor_checks-1.22.patch ]; GOOS = stdenv.targetPlatform.parsed.kernel.name; @@ -145,7 +138,6 @@ stdenv.mkDerivation (finalAttrs: { ''; preInstall = '' - rm -r pkg/obj # Contains the wrong perl shebang when cross compiling, # since it is not used for anything we can deleted as well. rm src/regexp/syntax/make_perl_groups.pl @@ -165,7 +157,7 @@ stdenv.mkDerivation (finalAttrs: { installPhase = '' runHook preInstall mkdir -p $GOROOT_FINAL - cp -a bin pkg src lib misc api doc $GOROOT_FINAL + cp -a bin pkg src lib misc api doc go.env $GOROOT_FINAL mkdir -p $out/bin ln -s $GOROOT_FINAL/bin/* $out/bin runHook postInstall diff --git a/pkgs/development/compilers/go/go_no_vendor_checks-1.22.patch b/pkgs/development/compilers/go/go_no_vendor_checks-1.22.patch new file mode 100644 index 0000000000000..bd545d50948f0 --- /dev/null +++ b/pkgs/development/compilers/go/go_no_vendor_checks-1.22.patch @@ -0,0 +1,23 @@ +Starting from go1.14, go verifes that vendor/modules.txt matches the requirements +and replacements listed in the main module go.mod file, and it is a hard failure if +vendor/modules.txt is missing. + +Relax module consistency checks and switch back to pre go1.14 behaviour if +vendor/modules.txt is missing regardless of go version requirement in go.mod. + +This has been ported from FreeBSD: https://reviews.freebsd.org/D24122 +See https://github.com/golang/go/issues/37948 for discussion. + +diff --git a/src/cmd/go/internal/modload/vendor.go b/src/cmd/go/internal/modload/vendor.go +index b2cb44100e..05bf3829d5 100644 +--- a/src/cmd/go/internal/modload/vendor.go ++++ b/src/cmd/go/internal/modload/vendor.go +@@ -159,7 +159,7 @@ func checkVendorConsistency(indexes []*modFileIndex, modFiles []*modfile.File, m + panic(fmt.Errorf("not in workspace mode but number of indexes is %v, not 1", len(indexes))) + } + index := indexes[0] +- if gover.Compare(index.goVersion, "1.14") < 0 { ++ if gover.Compare(index.goVersion, "1.14") < 0 || (os.Getenv("GO_NO_VENDOR_CHECKS") == "1" && len(vendorMeta) == 0) { + // Go versions before 1.14 did not include enough information in + // vendor/modules.txt to check for consistency. + // If we know that we're on an earlier version, relax the consistency check. diff --git a/pkgs/development/compilers/graalvm/community-edition/graalpy/hashes.nix b/pkgs/development/compilers/graalvm/community-edition/graalpy/hashes.nix index c18e7bcba0068..84bb1660f7b53 100644 --- a/pkgs/development/compilers/graalvm/community-edition/graalpy/hashes.nix +++ b/pkgs/development/compilers/graalvm/community-edition/graalpy/hashes.nix @@ -1,22 +1,22 @@ # Generated by update.sh script { - "version" = "23.1.1"; + "version" = "23.1.2"; "hashes" = { "aarch64-linux" = { - sha256 = "1jv9icfh3w8gdch0h3l8mm6q96z3lv89s8zv788wvkkb87zv8w8m"; - url = "https://github.com/oracle/graalpython/releases/download/graal-23.1.1/graalpy-community-23.1.1-linux-aarch64.tar.gz"; + sha256 = "0ypzhi22q2d1dfl3qf3yfsaqdsrj8sksc2spa79rdqdr690li4y9"; + url = "https://github.com/oracle/graalpython/releases/download/graal-23.1.2/graalpy-community-23.1.2-linux-aarch64.tar.gz"; }; "x86_64-linux" = { - sha256 = "108qdf0ss9l0x6k983v9yg6m5i7aqwfdxjqa5fx62xj027wi5pqk"; - url = "https://github.com/oracle/graalpython/releases/download/graal-23.1.1/graalpy-community-23.1.1-linux-amd64.tar.gz"; + sha256 = "1n99hzf1sidacv4qr5j2b3dpwrc6qb71alwfkdxjqx6xv7g7nmr7"; + url = "https://github.com/oracle/graalpython/releases/download/graal-23.1.2/graalpy-community-23.1.2-linux-amd64.tar.gz"; }; "x86_64-darwin" = { - sha256 = "019s7vlr8a6x60g0yh36pdf2vvan1v2wmq8z4xrcgpl96zpwwn5h"; - url = "https://github.com/oracle/graalpython/releases/download/graal-23.1.1/graalpy-community-23.1.1-macos-amd64.tar.gz"; + sha256 = "0g2xj5hiq8idacdm0jlg5lvvv98f38p6fjb839gfacsb25pmhkg7"; + url = "https://github.com/oracle/graalpython/releases/download/graal-23.1.2/graalpy-community-23.1.2-macos-amd64.tar.gz"; }; "aarch64-darwin" = { - sha256 = "0qbanbivkj62cjg2ll4ia23c435i1cvwy7pq19dvj8s204mpl8l2"; - url = "https://github.com/oracle/graalpython/releases/download/graal-23.1.1/graalpy-community-23.1.1-macos-aarch64.tar.gz"; + sha256 = "0qinxqkkm9bfnzr43p3yhs3alfnl4pppca6yahsk5bp8ngyzasfj"; + url = "https://github.com/oracle/graalpython/releases/download/graal-23.1.2/graalpy-community-23.1.2-macos-aarch64.tar.gz"; }; }; } diff --git a/pkgs/development/compilers/graalvm/community-edition/graalvm-ce/hashes.nix b/pkgs/development/compilers/graalvm/community-edition/graalvm-ce/hashes.nix index e9454dca7250c..45028f3d544bd 100644 --- a/pkgs/development/compilers/graalvm/community-edition/graalvm-ce/hashes.nix +++ b/pkgs/development/compilers/graalvm/community-edition/graalvm-ce/hashes.nix @@ -1,22 +1,22 @@ # Generated by update.sh script { - "version" = "21.0.1"; + "version" = "21.0.2"; "hashes" = { "aarch64-linux" = { - sha256 = "0vb1bdbn4lqig4jihynacbyrj551m1pcmj6qh86kdwx0kn9400yy"; - url = "https://github.com/graalvm/graalvm-ce-builds/releases/download/jdk-21.0.1/graalvm-community-jdk-21.0.1_linux-aarch64_bin.tar.gz"; + sha256 = "0yndazvc4kyr9widfn8ql5vd57m4m5inqz2wcpsarw38rs8ycjx3"; + url = "https://github.com/graalvm/graalvm-ce-builds/releases/download/jdk-21.0.2/graalvm-community-jdk-21.0.2_linux-aarch64_bin.tar.gz"; }; "x86_64-linux" = { - sha256 = "1gvkxqmbsh7pklh9bkhndh08nnjcmgq0xpzc96dgacqnlr4fx0sj"; - url = "https://github.com/graalvm/graalvm-ce-builds/releases/download/jdk-21.0.1/graalvm-community-jdk-21.0.1_linux-x64_bin.tar.gz"; + sha256 = "0j5ffszcaqv3fq159hyb611jm8w1q4n1cywmbd7vi69smad0cj5h"; + url = "https://github.com/graalvm/graalvm-ce-builds/releases/download/jdk-21.0.2/graalvm-community-jdk-21.0.2_linux-x64_bin.tar.gz"; }; "x86_64-darwin" = { - sha256 = "0sks663ldc0m3rhc882mzn44kipzbjw7325dhkpwy874p47j9zns"; - url = "https://github.com/graalvm/graalvm-ce-builds/releases/download/jdk-21.0.1/graalvm-community-jdk-21.0.1_macos-x64_bin.tar.gz"; + sha256 = "1qfrn1068idnkzd6mdpw1x17sqrj59rz9avphj8225sxlhzsk2ks"; + url = "https://github.com/graalvm/graalvm-ce-builds/releases/download/jdk-21.0.2/graalvm-community-jdk-21.0.2_macos-x64_bin.tar.gz"; }; "aarch64-darwin" = { - sha256 = "0i7zzq1czgc4lk1z278zp4cml4kdryafhrma5rqaja75933jpi2h"; - url = "https://github.com/graalvm/graalvm-ce-builds/releases/download/jdk-21.0.1/graalvm-community-jdk-21.0.1_macos-aarch64_bin.tar.gz"; + sha256 = "1dssa3nhix7bqygdkkfp0b9myjg5f91dlgm8mf6r7qf7mj9klpji"; + url = "https://github.com/graalvm/graalvm-ce-builds/releases/download/jdk-21.0.2/graalvm-community-jdk-21.0.2_macos-aarch64_bin.tar.gz"; }; }; } diff --git a/pkgs/development/compilers/graalvm/community-edition/truffleruby/hashes.nix b/pkgs/development/compilers/graalvm/community-edition/truffleruby/hashes.nix index 51e40dd590d58..331db1caf9b9d 100644 --- a/pkgs/development/compilers/graalvm/community-edition/truffleruby/hashes.nix +++ b/pkgs/development/compilers/graalvm/community-edition/truffleruby/hashes.nix @@ -1,22 +1,22 @@ # Generated by update.sh script { - "version" = "23.1.1"; + "version" = "23.1.2"; "hashes" = { "aarch64-linux" = { - sha256 = "0d8lxbfafgyirgs06bmfbmww61h8w3sr95z7y4x0ykfs7mghsnpd"; - url = "https://github.com/oracle/truffleruby/releases/download/graal-23.1.1/truffleruby-community-23.1.1-linux-aarch64.tar.gz"; + sha256 = "0bmrpp88zny0hbq4hqhs4xajqr96qxj6p5nj12m7kcr8hzh2vkf3"; + url = "https://github.com/oracle/truffleruby/releases/download/graal-23.1.2/truffleruby-community-23.1.2-linux-aarch64.tar.gz"; }; "x86_64-linux" = { - sha256 = "1304yvllffnhwmpbcdsgcwkhc5w5w7r1rhxdwb709if8kglx793y"; - url = "https://github.com/oracle/truffleruby/releases/download/graal-23.1.1/truffleruby-community-23.1.1-linux-amd64.tar.gz"; + sha256 = "0hrab1jrs59swpx33zg111wa4nv2215ygyckv47x6mmjibf30c86"; + url = "https://github.com/oracle/truffleruby/releases/download/graal-23.1.2/truffleruby-community-23.1.2-linux-amd64.tar.gz"; }; "x86_64-darwin" = { - sha256 = "09lfski3dj3zzp7cdfrndjafx48ln0wdgb7cs3an3krh6xjchi8l"; - url = "https://github.com/oracle/truffleruby/releases/download/graal-23.1.1/truffleruby-community-23.1.1-macos-amd64.tar.gz"; + sha256 = "1y68wz6rv2vksbnhmf57zlk8smgv9954np07d8ywdls99a92217z"; + url = "https://github.com/oracle/truffleruby/releases/download/graal-23.1.2/truffleruby-community-23.1.2-macos-amd64.tar.gz"; }; "aarch64-darwin" = { - sha256 = "152mrz5hfnmsf5k1gd6rsb6yacy3zyjm2jl8q3zjl18n784np57b"; - url = "https://github.com/oracle/truffleruby/releases/download/graal-23.1.1/truffleruby-community-23.1.1-macos-aarch64.tar.gz"; + sha256 = "0za4ff3wlj2fgl2z3vzp2p4jf9x0fkvd98qwk1dm7lmffghfb14n"; + url = "https://github.com/oracle/truffleruby/releases/download/graal-23.1.2/truffleruby-community-23.1.2-macos-aarch64.tar.gz"; }; }; } diff --git a/pkgs/development/compilers/haxe/default.nix b/pkgs/development/compilers/haxe/default.nix index f673eb6d0340d..99fde9c66a591 100644 --- a/pkgs/development/compilers/haxe/default.nix +++ b/pkgs/development/compilers/haxe/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, coreutils, ocaml-ng, zlib, pcre, neko, mbedtls_2, Security }: +{ lib, stdenv, fetchFromGitHub, coreutils, ocaml-ng, zlib, pcre, pcre2, neko, mbedtls_2, Security }: let ocamlDependencies = version: @@ -37,7 +37,8 @@ let pname = "haxe"; inherit version; - buildInputs = [ zlib pcre neko ] + buildInputs = [ zlib neko ] + ++ (if lib.versionAtLeast version "4.3" then [pcre2] else [pcre]) ++ lib.optional (lib.versionAtLeast version "4.1") mbedtls_2 ++ lib.optional (lib.versionAtLeast version "4.1" && stdenv.isDarwin) Security ++ ocamlDependencies version; @@ -124,8 +125,8 @@ in { version = "4.1.5"; sha256 = "0rns6d28qzkbai6yyws08yzbyvxfn848nj0fsji7chdi0y7pzzj0"; }; - haxe_4_2 = generic { - version = "4.2.5"; - sha256 = "sha256-Y0gx6uOQX4OZgg8nK4GJxRR1rKh0S2JUjZQFVQ4cfTs="; + haxe_4_3 = generic { + version = "4.3.3"; + sha256 = "sha256-sMklqQkVbWCYCKpOU23AjkuxzcVV7Aa8ljlFpruam9Y="; }; } diff --git a/pkgs/development/compilers/idris2/build-idris.nix b/pkgs/development/compilers/idris2/build-idris.nix new file mode 100644 index 0000000000000..3ad0956e3a081 --- /dev/null +++ b/pkgs/development/compilers/idris2/build-idris.nix @@ -0,0 +1,86 @@ +{ stdenv, lib, idris2, makeWrapper +}: +# Usage: let +# pkg = idris2Packages.buildIdris { +# src = ...; +# ipkgName = "my-pkg"; +# idrisLibraries = [ ]; +# }; +# in { +# lib = pkg.library { withSource = true; }; +# bin = pkg.executable; +# } +# +{ src +, ipkgName +, version ? "unversioned" +, idrisLibraries # Other libraries built with buildIdris +, ... }@attrs: + +let + ipkgFileName = ipkgName + ".ipkg"; + idrName = "idris2-${idris2.version}"; + libSuffix = "lib/${idrName}"; + libDirs = + (lib.makeSearchPath libSuffix idrisLibraries) + + ":${idris2}/${idrName}"; + supportDir = "${idris2}/${idrName}/lib"; + drvAttrs = builtins.removeAttrs attrs [ + "ipkgName" + "idrisLibraries" + ]; + + sharedAttrs = drvAttrs // { + pname = ipkgName; + inherit version; + src = src; + nativeBuildInputs = [ idris2 makeWrapper ] ++ attrs.nativeBuildInputs or []; + buildInputs = idrisLibraries ++ attrs.buildInputs or []; + + IDRIS2_PACKAGE_PATH = libDirs; + + buildPhase = '' + runHook preBuild + idris2 --build ${ipkgFileName} + runHook postBuild + ''; + }; + +in { + executable = stdenv.mkDerivation (sharedAttrs // { + installPhase = '' + runHook preInstall + mkdir -p $out/bin + scheme_app="$(find ./build/exec -name '*_app')" + if [ "$scheme_app" = ''' ]; then + mv -- build/exec/* $out/bin/ + chmod +x $out/bin/* + # ^ remove after Idris2 0.8.0 is released. will be superfluous: + # https://github.com/idris-lang/Idris2/pull/3189 + else + cd build/exec/*_app + rm -f ./libidris2_support.so + for file in *.so; do + bin_name="''${file%.so}" + mv -- "$file" "$out/bin/$bin_name" + wrapProgram "$out/bin/$bin_name" \ + --prefix LD_LIBRARY_PATH : ${supportDir} \ + --prefix DYLD_LIBRARY_PATH : ${supportDir} + done + fi + runHook postInstall + ''; + }); + + library = { withSource ? false }: + let installCmd = if withSource then "--install-with-src" else "--install"; + in stdenv.mkDerivation (sharedAttrs // { + installPhase = '' + runHook preInstall + mkdir -p $out/${libSuffix} + export IDRIS2_PREFIX=$out/lib + idris2 ${installCmd} ${ipkgFileName} + runHook postInstall + ''; + }); +} diff --git a/pkgs/development/compilers/idris2/default.nix b/pkgs/development/compilers/idris2/default.nix index 4bac5d33b1eb2..79a90cbee0f3d 100644 --- a/pkgs/development/compilers/idris2/default.nix +++ b/pkgs/development/compilers/idris2/default.nix @@ -1,97 +1,21 @@ -# Almost 1:1 copy of idris2's nix/platform.nix. Some work done in their flake.nix -# we do here instead. -{ stdenv -, lib -, chez -, chez-racket -, clang -, gmp -, fetchFromGitHub -, makeWrapper -, gambit -, nodejs -, zsh -, callPackage +{ callPackage +, idris2Packages }: -# NOTICE: An `idris2WithPackages` is available at: https://github.com/claymager/idris2-pkgs - let - # Taken from Idris2/idris2/flake.nix. Check if the idris2 project does it this - # way, still, every now and then. - platformChez = if stdenv.system == "x86_64-linux" then chez else chez-racket; -# Uses scheme to bootstrap the build of idris2 -in stdenv.mkDerivation rec { - pname = "idris2"; - version = "0.7.0"; - - src = fetchFromGitHub { - owner = "idris-lang"; - repo = "Idris2"; - rev = "v${version}"; - sha256 = "sha256-VwveX3fZfrxEsytpbOc5Tm6rySpLFhTt5132J6rmrmM="; - }; - - strictDeps = true; - nativeBuildInputs = [ makeWrapper clang platformChez ] - ++ lib.optionals stdenv.isDarwin [ zsh ]; - buildInputs = [ platformChez gmp ]; - - prePatch = '' - patchShebangs --build tests - ''; - - makeFlags = [ "PREFIX=$(out)" ] - ++ lib.optional stdenv.isDarwin "OS="; - - # The name of the main executable of pkgs.chez is `scheme` - buildFlags = [ "bootstrap" "SCHEME=scheme" ]; - - checkTarget = "test"; - nativeCheckInputs = [ gambit nodejs ]; # racket ]; - checkFlags = [ "INTERACTIVE=" ]; - - # TODO: Move this into its own derivation, such that this can be changed - # without having to recompile idris2 every time. - postInstall = let - name = "${pname}-${version}"; - globalLibraries = [ - "\\$HOME/.nix-profile/lib/${name}" - "/run/current-system/sw/lib/${name}" - "$out/${name}" - ]; - globalLibrariesPath = builtins.concatStringsSep ":" globalLibraries; - in '' - # Remove existing idris2 wrapper that sets incorrect LD_LIBRARY_PATH - rm $out/bin/idris2 - # The only thing we need from idris2_app is the actual binary - mv $out/bin/idris2_app/idris2.so $out/bin/idris2 - rm $out/bin/idris2_app/* - rmdir $out/bin/idris2_app - # idris2 needs to find scheme at runtime to compile - # idris2 installs packages with --install into the path given by - # IDRIS2_PREFIX. We set that to a default of ~/.idris2, to mirror the - # behaviour of the standard Makefile install. - # TODO: Make support libraries their own derivation such that - # overriding LD_LIBRARY_PATH is unnecessary - wrapProgram "$out/bin/idris2" \ - --set-default CHEZ "${platformChez}/bin/scheme" \ - --run 'export IDRIS2_PREFIX=''${IDRIS2_PREFIX-"$HOME/.idris2"}' \ - --suffix IDRIS2_LIBS ':' "$out/${name}/lib" \ - --suffix IDRIS2_DATA ':' "$out/${name}/support" \ - --suffix IDRIS2_PACKAGE_PATH ':' "${globalLibrariesPath}" \ - --suffix DYLD_LIBRARY_PATH ':' "$out/${name}/lib" \ - --suffix LD_LIBRARY_PATH ':' "$out/${name}/lib" - ''; - - # Run package tests - passthru.tests = callPackage ./tests.nix { inherit pname; }; - - meta = { - description = "A purely functional programming language with first class types"; - homepage = "https://github.com/idris-lang/Idris2"; - license = lib.licenses.bsd3; - maintainers = with lib.maintainers; [ fabianhjr wchresta ]; - inherit (chez.meta) platforms; - }; +in { + idris2 = callPackage ./idris2.nix { }; + idris2Lsp = callPackage ./idris2-lsp.nix { }; + + buildIdris = callPackage ./build-idris.nix { }; + + idris2Api = (idris2Packages.buildIdris { + inherit (idris2Packages.idris2) src version; + ipkgName = "idris2api"; + idrisLibraries = [ ]; + preBuild = '' + export IDRIS2_PREFIX=$out/lib + make src/IdrisPaths.idr + ''; + }).library; } diff --git a/pkgs/development/compilers/idris2/idris2-lsp.nix b/pkgs/development/compilers/idris2/idris2-lsp.nix new file mode 100644 index 0000000000000..d73f2d70d6d0c --- /dev/null +++ b/pkgs/development/compilers/idris2/idris2-lsp.nix @@ -0,0 +1,44 @@ +{ fetchFromGitHub, idris2Packages, makeWrapper }: + +let + globalLibraries = let + idrName = "idris2-${idris2Packages.idris2.version}"; + libSuffix = "lib/${idrName}"; + in [ + "\\$HOME/.nix-profile/lib/${idrName}" + "/run/current-system/sw/lib/${idrName}" + "${idris2Packages.idris2}/${idrName}" + ]; + globalLibrariesPath = builtins.concatStringsSep ":" globalLibraries; + + idris2Api = idris2Packages.idris2Api { }; + lspLib = (idris2Packages.buildIdris { + ipkgName = "lsp-lib"; + version = "2024-01-21"; + src = fetchFromGitHub { + owner = "idris-community"; + repo = "LSP-lib"; + rev = "03851daae0c0274a02d94663d8f53143a94640da"; + hash = "sha256-ICW9oOOP70hXneJFYInuPY68SZTDw10dSxSPTW4WwWM="; + }; + idrisLibraries = [ ]; + }).library { }; + + lspPkg = idris2Packages.buildIdris { + ipkgName = "idris2-lsp"; + version = "2024-01-21"; + src = fetchFromGitHub { + owner = "idris-community"; + repo = "idris2-lsp"; + rev = "a77ef2d563418925aa274fa29f06880dde43f4ec"; + hash = "sha256-zjfVfkpiQS9AdmTfq0hYRSelJq5Caa9VGTuFLtSvl5o="; + }; + idrisLibraries = [idris2Api lspLib]; + + buildInputs = [makeWrapper]; + postInstall = '' + wrapProgram $out/bin/idris2-lsp \ + --suffix IDRIS2_PACKAGE_PATH ':' "${globalLibrariesPath}" + ''; + }; +in lspPkg.executable diff --git a/pkgs/development/compilers/idris2/idris2.nix b/pkgs/development/compilers/idris2/idris2.nix new file mode 100644 index 0000000000000..88c4d05703cf6 --- /dev/null +++ b/pkgs/development/compilers/idris2/idris2.nix @@ -0,0 +1,97 @@ +# Almost 1:1 copy of idris2's nix/package.nix. Some work done in their flake.nix +# we do here instead. +{ stdenv +, lib +, chez +, chez-racket +, clang +, gmp +, fetchFromGitHub +, makeWrapper +, gambit +, nodejs +, zsh +, callPackage +}: + +# NOTICE: An `idris2WithPackages` is available at: https://github.com/claymager/idris2-pkgs + +let + # Taken from Idris2/idris2/flake.nix. Check if the idris2 project does it this + # way, still, every now and then. + platformChez = if stdenv.system == "x86_64-linux" then chez else chez-racket; +# Uses scheme to bootstrap the build of idris2 +in stdenv.mkDerivation rec { + pname = "idris2"; + version = "0.7.0"; + + src = fetchFromGitHub { + owner = "idris-lang"; + repo = "Idris2"; + rev = "v${version}"; + sha256 = "sha256-VwveX3fZfrxEsytpbOc5Tm6rySpLFhTt5132J6rmrmM="; + }; + + strictDeps = true; + nativeBuildInputs = [ makeWrapper clang platformChez ] + ++ lib.optionals stdenv.isDarwin [ zsh ]; + buildInputs = [ platformChez gmp ]; + + prePatch = '' + patchShebangs --build tests + ''; + + makeFlags = [ "PREFIX=$(out)" ] + ++ lib.optional stdenv.isDarwin "OS="; + + # The name of the main executable of pkgs.chez is `scheme` + buildFlags = [ "bootstrap" "SCHEME=scheme" ]; + + checkTarget = "test"; + nativeCheckInputs = [ gambit nodejs ]; # racket ]; + checkFlags = [ "INTERACTIVE=" ]; + + # TODO: Move this into its own derivation, such that this can be changed + # without having to recompile idris2 every time. + postInstall = let + name = "${pname}-${version}"; + globalLibraries = [ + "\\$HOME/.nix-profile/lib/${name}" + "/run/current-system/sw/lib/${name}" + "$out/${name}" + ]; + globalLibrariesPath = builtins.concatStringsSep ":" globalLibraries; + in '' + # Remove existing idris2 wrapper that sets incorrect LD_LIBRARY_PATH + rm $out/bin/idris2 + # The only thing we need from idris2_app is the actual binary + mv $out/bin/idris2_app/idris2.so $out/bin/idris2 + rm $out/bin/idris2_app/* + rmdir $out/bin/idris2_app + # idris2 needs to find scheme at runtime to compile + # idris2 installs packages with --install into the path given by + # IDRIS2_PREFIX. We set that to a default of ~/.idris2, to mirror the + # behaviour of the standard Makefile install. + # TODO: Make support libraries their own derivation such that + # overriding LD_LIBRARY_PATH is unnecessary + wrapProgram "$out/bin/idris2" \ + --set-default CHEZ "${platformChez}/bin/scheme" \ + --run 'export IDRIS2_PREFIX=''${IDRIS2_PREFIX-"$HOME/.idris2"}' \ + --suffix IDRIS2_LIBS ':' "$out/${name}/lib" \ + --suffix IDRIS2_DATA ':' "$out/${name}/support" \ + --suffix IDRIS2_PACKAGE_PATH ':' "${globalLibrariesPath}" \ + --suffix DYLD_LIBRARY_PATH ':' "$out/${name}/lib" \ + --suffix LD_LIBRARY_PATH ':' "$out/${name}/lib" + ''; + + # Run package tests + passthru.tests = callPackage ./tests.nix { inherit pname; }; + + meta = { + description = "A purely functional programming language with first class types"; + homepage = "https://github.com/idris-lang/Idris2"; + license = lib.licenses.bsd3; + maintainers = with lib.maintainers; [ fabianhjr wchresta mattpolzin ]; + inherit (chez.meta) platforms; + }; +} diff --git a/pkgs/development/compilers/inform6/default.nix b/pkgs/development/compilers/inform6/default.nix index 107ffaf57233e..49af7e6676e33 100644 --- a/pkgs/development/compilers/inform6/default.nix +++ b/pkgs/development/compilers/inform6/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "inform6"; - version = "6.41-r10"; + version = "6.41-r11"; src = fetchurl { url = "https://ifarchive.org/if-archive/infocom/compilers/inform6/source/inform-${version}.tar.gz"; - sha256 = "sha256-o2eBpzLczNjeCjoEtZsGgfobEwPVj1FEliDKC5qN6Hk="; + sha256 = "sha256-kfFfjJL03f3af1h/JdvkItuDFu8aGlM3BRa2eBB+ddY="; }; buildInputs = [ perl ]; diff --git a/pkgs/development/compilers/intel-graphics-compiler/default.nix b/pkgs/development/compilers/intel-graphics-compiler/default.nix index db03d2d85ca25..54a8e82e27ee1 100644 --- a/pkgs/development/compilers/intel-graphics-compiler/default.nix +++ b/pkgs/development/compilers/intel-graphics-compiler/default.nix @@ -5,6 +5,7 @@ , runCommandLocal , bison , flex +, intel-compute-runtime , llvmPackages_14 , opencl-clang , python3 @@ -19,8 +20,8 @@ let vc_intrinsics_src = fetchFromGitHub { owner = "intel"; repo = "vc-intrinsics"; - rev = "v0.13.0"; - hash = "sha256-A9G1PH0WGdxU2u/ODrou53qF9kvrmE0tJSl9cFIOus0="; + rev = "v0.14.0"; + hash = "sha256-t7m2y+DiZf0xum1vneXvoCyH767SKMOq4YzMIuZngR8="; }; inherit (llvmPackages_14) lld llvm; @@ -30,13 +31,13 @@ in stdenv.mkDerivation rec { pname = "intel-graphics-compiler"; - version = "1.0.15136.4"; + version = "1.0.15610.11"; src = fetchFromGitHub { owner = "intel"; repo = "intel-graphics-compiler"; rev = "igc-${version}"; - hash = "sha256-Qh3FNck1z+rr7eSqxVnNs7YKvgXpKGY5dd3yx1Ft9Mg="; + hash = "sha256-Fu1g5M2lpcnLw6aSHI5gx47VOfx+rIdIhBlwe/Dv8bk="; }; nativeBuildInputs = [ bison cmake flex (python3.withPackages (ps : with ps; [ mako ])) ]; @@ -73,6 +74,10 @@ stdenv.mkDerivation rec { "-Wno-dev" ]; + passthru.tests = { + inherit intel-compute-runtime; + }; + meta = with lib; { homepage = "https://github.com/intel/intel-graphics-compiler"; description = "LLVM-based compiler for OpenCL targeting Intel Gen graphics hardware"; diff --git a/pkgs/development/compilers/julia/generic-bin.nix b/pkgs/development/compilers/julia/generic-bin.nix index e19a0e020a4ac..09a8c2bce3bf5 100644 --- a/pkgs/development/compilers/julia/generic-bin.nix +++ b/pkgs/development/compilers/julia/generic-bin.nix @@ -16,10 +16,14 @@ let # Test flaky because of our RPATH patching # https://github.com/NixOS/nixpkgs/pull/230965#issuecomment-1545336489 "compiler/codegen" + # Test flaky + "read" ] ++ lib.optionals (lib.versionAtLeast version "1.10") [ # Test flaky # https://github.com/JuliaLang/julia/issues/52739 "REPL" + # Test flaky + "ccall" ] ++ lib.optionals stdenv.isDarwin [ # Test flaky on ofborg "FileWatching" diff --git a/pkgs/development/compilers/julia/patches/1.10/0001-skip-building-docs-as-it-requires-network-access.patch b/pkgs/development/compilers/julia/patches/1.10/0001-skip-building-docs-as-it-requires-network-access.patch index e7bc9187cead1..6ff33b342cfdc 100644 --- a/pkgs/development/compilers/julia/patches/1.10/0001-skip-building-docs-as-it-requires-network-access.patch +++ b/pkgs/development/compilers/julia/patches/1.10/0001-skip-building-docs-as-it-requires-network-access.patch @@ -30,5 +30,5 @@ index 1565014a0f..edd5c65244 100644 -rm -f $(DESTDIR)$(datarootdir)/julia/base/version_git.sh -rm -f $(DESTDIR)$(datarootdir)/julia/test/Makefile -- -2.42.0 +2.43.0 diff --git a/pkgs/development/compilers/julia/patches/1.10/0002-skip-failing-and-flaky-tests.patch b/pkgs/development/compilers/julia/patches/1.10/0002-skip-failing-and-flaky-tests.patch index 2b9986107faf6..474653bf342ce 100644 --- a/pkgs/development/compilers/julia/patches/1.10/0002-skip-failing-and-flaky-tests.patch +++ b/pkgs/development/compilers/julia/patches/1.10/0002-skip-failing-and-flaky-tests.patch @@ -1,4 +1,4 @@ -From c7e2f6ed00c170b68d5d156faac38aa76d4490fd Mon Sep 17 00:00:00 2001 +From 9da2f2596db9f4f1a61825d82d9b8c3f3b2e99aa Mon Sep 17 00:00:00 2001 From: Nick Cao <nickcao@nichi.co> Date: Wed, 10 Jan 2024 20:58:20 -0500 Subject: [PATCH 2/2] skip failing and flaky tests @@ -8,7 +8,7 @@ Subject: [PATCH 2/2] skip failing and flaky tests 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/test/Makefile b/test/Makefile -index 88dbe5b2b4..f0bdedfdf5 100644 +index 88dbe5b2b4..a2a7a55e20 100644 --- a/test/Makefile +++ b/test/Makefile @@ -28,7 +28,7 @@ default: @@ -16,10 +16,10 @@ index 88dbe5b2b4..f0bdedfdf5 100644 $(TESTS): @cd $(SRCDIR) && \ - $(call PRINT_JULIA, $(call spawn,$(JULIA_EXECUTABLE)) --check-bounds=yes --startup-file=no --depwarn=error ./runtests.jl $@) -+ $(call PRINT_JULIA, $(call spawn,$(JULIA_EXECUTABLE)) --check-bounds=yes --startup-file=no --depwarn=error ./runtests.jl --skip NetworkOptions REPL channels $@) ++ $(call PRINT_JULIA, $(call spawn,$(JULIA_EXECUTABLE)) --check-bounds=yes --startup-file=no --depwarn=error ./runtests.jl --skip NetworkOptions REPL channels FileWatching ccall $@) $(addprefix revise-, $(TESTS)): revise-% : @cd $(SRCDIR) && \ -- -2.42.0 +2.43.0 diff --git a/pkgs/development/compilers/koka/default.nix b/pkgs/development/compilers/koka/default.nix index aec856e47d684..e3462c826c767 100644 --- a/pkgs/development/compilers/koka/default.nix +++ b/pkgs/development/compilers/koka/default.nix @@ -1,15 +1,42 @@ -{ stdenv, pkgsHostTarget, cmake, makeWrapper, mkDerivation, fetchFromGitHub -, alex, array, base, bytestring, cond, containers, directory, extra -, filepath, hpack, hspec, hspec-core, isocline, json, lib, mtl -, parsec, process, regex-compat, text, time }: +{ stdenv +, pkgsHostTarget +, cmake +, makeWrapper +, mkDerivation +, fetchFromGitHub +, alex +, lib +, hpack +, aeson +, array +, async +, base +, bytestring +, co-log-core +, cond +, containers +, directory +, FloatingHex +, isocline +, lens +, lsp +, mtl +, network +, network-simple +, parsec +, process +, text +, text-rope +, time +}: let - version = "2.4.2"; + version = "3.0.4"; src = fetchFromGitHub { owner = "koka-lang"; repo = "koka"; rev = "v${version}"; - sha256 = "sha256-sVjaIzOxNuBtDswpDl5gLB10Sw945TQAf2ywrKumqqk="; + sha256 = "sha256-U8BW1Aq9t3je0YDV8NkE0MzdnjwXBJQbmekh5ufOs3k="; fetchSubmodules = true; }; kklib = stdenv.mkDerivation { @@ -38,8 +65,28 @@ mkDerivation rec { isExecutable = true; libraryToolDepends = [ hpack ]; executableHaskellDepends = [ - array base bytestring cond containers directory isocline mtl - parsec process text time kklib + aeson + array + async + base + bytestring + co-log-core + cond + containers + directory + FloatingHex + isocline + lens + lsp + mtl + network + network-simple + parsec + process + text + text-rope + time + kklib ]; executableToolDepends = [ alex makeWrapper ]; postInstall = '' diff --git a/pkgs/development/compilers/ldc/default.nix b/pkgs/development/compilers/ldc/default.nix index 8624e64c658b9..6b07612177038 100644 --- a/pkgs/development/compilers/ldc/default.nix +++ b/pkgs/development/compilers/ldc/default.nix @@ -1,4 +1,4 @@ import ./generic.nix { - version = "1.35.0"; - sha256 = "sha256-bilpk3BsdsCT5gkTmqCz+HBDVfoPN1b2dY141EIm36A="; + version = "1.36.0"; + sha256 = "sha256-oAx5BzEjqIfBf0Rsd4KklVajUSo9Natna31Trhu41u8="; } diff --git a/pkgs/development/compilers/ldc/generic.nix b/pkgs/development/compilers/ldc/generic.nix index 0d0926aab12e7..16598714410fe 100644 --- a/pkgs/development/compilers/ldc/generic.nix +++ b/pkgs/development/compilers/ldc/generic.nix @@ -1,5 +1,5 @@ { version, sha256 }: -{ lib, stdenv, fetchurl, cmake, ninja, llvm_16, curl, tzdata +{ lib, stdenv, fetchurl, cmake, ninja, llvm_17, curl, tzdata , libconfig, lit, gdb, unzip, darwin, bash , callPackage, makeWrapper, runCommand, targetPackages , ldcBootstrap ? callPackage ./bootstrap.nix { } @@ -54,7 +54,7 @@ stdenv.mkDerivation rec { ''; nativeBuildInputs = [ - cmake ldcBootstrap lit lit.python llvm_16.dev makeWrapper ninja unzip + cmake ldcBootstrap lit lit.python llvm_17.dev makeWrapper ninja unzip ] ++ lib.optionals stdenv.hostPlatform.isDarwin [ darwin.apple_sdk.frameworks.Foundation diff --git a/pkgs/development/compilers/llvm/10/clang/compiler-rt-baremetal.patch b/pkgs/development/compilers/llvm/10/clang/compiler-rt-baremetal.patch deleted file mode 100644 index a4a0f21b0fcd6..0000000000000 --- a/pkgs/development/compilers/llvm/10/clang/compiler-rt-baremetal.patch +++ /dev/null @@ -1,53 +0,0 @@ -Index: lib/Driver/ToolChains/BareMetal.cpp -=================================================================== ---- a/lib/Driver/ToolChains/BareMetal.cpp -+++ b/lib/Driver/ToolChains/BareMetal.cpp -@@ -157,7 +157,7 @@ - void BareMetal::AddLinkRuntimeLib(const ArgList &Args, - ArgStringList &CmdArgs) const { - CmdArgs.push_back(Args.MakeArgString("-lclang_rt.builtins-" + -- getTriple().getArchName() + ".a")); -+ getTriple().getArchName())); - } - - void baremetal::Linker::ConstructJob(Compilation &C, const JobAction &JA, -Index: test/Driver/baremetal.cpp -=================================================================== ---- a/test/Driver/baremetal.cpp -+++ b/test/Driver/baremetal.cpp -@@ -13,7 +13,7 @@ - // CHECK-V6M-C-NEXT: "{{[^"]*}}ld{{(\.(lld|bfd|gold))?}}{{(\.exe)?}}" "{{.*}}.o" "-Bstatic" - // CHECK-V6M-C-SAME: "-L[[RESOURCE_DIR:[^"]+]]{{[/\\]+}}lib{{[/\\]+}}baremetal" - // CHECK-V6M-C-SAME: "-T" "semihosted.lds" "-Lsome{{[/\\]+}}directory{{[/\\]+}}user{{[/\\]+}}asked{{[/\\]+}}for" --// CHECK-V6M-C-SAME: "-lc" "-lm" "-lclang_rt.builtins-armv6m.a" -+// CHECK-V6M-C-SAME: "-lc" "-lm" "-lclang_rt.builtins-armv6m" - // CHECK-V6M-C-SAME: "-o" "{{.*}}.o" - - // RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ -@@ -35,7 +35,7 @@ - // CHECK-V6M-DEFAULTCXX: "{{[^"]*}}ld{{(\.(lld|bfd|gold))?}}{{(\.exe)?}}" "{{.*}}.o" "-Bstatic" - // CHECK-V6M-DEFAULTCXX-SAME: "-L{{[^"]*}}{{[/\\]+}}lib{{(64)?}}{{[/\\]+}}clang{{[/\\]+}}{{.*}}{{[/\\]+}}lib{{[/\\]+}}baremetal" - // CHECK-V6M-DEFAULTCXX-SAME: "-lc++" "-lc++abi" "-lunwind" --// CHECK-V6M-DEFAULTCXX-SAME: "-lc" "-lm" "-lclang_rt.builtins-armv6m.a" -+// CHECK-V6M-DEFAULTCXX-SAME: "-lc" "-lm" "-lclang_rt.builtins-armv6m" - // CHECK-V6M-DEFAULTCXX-SAME: "-o" "{{.*}}.o" - - // RUN: %clangxx -no-canonical-prefixes %s -### -o %t.o 2>&1 \ -@@ -48,7 +48,7 @@ - // CHECK-V6M-LIBCXX: "{{[^"]*}}ld{{(\.(lld|bfd|gold))?}}{{(\.exe)?}}" "{{.*}}.o" "-Bstatic" - // CHECK-V6M-LIBCXX-SAME: "-L{{[^"]*}}{{[/\\]+}}lib{{(64)?}}{{[/\\]+}}clang{{[/\\]+}}{{.*}}{{[/\\]+}}lib{{[/\\]+}}baremetal" - // CHECK-V6M-LIBCXX-SAME: "-lc++" "-lc++abi" "-lunwind" --// CHECK-V6M-LIBCXX-SAME: "-lc" "-lm" "-lclang_rt.builtins-armv6m.a" -+// CHECK-V6M-LIBCXX-SAME: "-lc" "-lm" "-lclang_rt.builtins-armv6m" - // CHECK-V6M-LIBCXX-SAME: "-o" "{{.*}}.o" - - // RUN: %clangxx -no-canonical-prefixes %s -### -o %t.o 2>&1 \ -@@ -61,7 +61,7 @@ - // CHECK-V6M-LIBSTDCXX: "{{[^"]*}}ld{{(\.(lld|bfd|gold))?}}{{(\.exe)?}}" "{{.*}}.o" "-Bstatic" - // CHECK-V6M-LIBSTDCXX-SAME: "-L{{[^"]*}}{{[/\\]+}}lib{{(64)?}}{{[/\\]+}}clang{{[/\\]+}}{{.*}}{{[/\\]+}}lib{{[/\\]+}}baremetal" - // CHECK-V6M-LIBSTDCXX-SAME: "-lstdc++" "-lsupc++" "-lunwind" --// CHECK-V6M-LIBSTDCXX-SAME: "-lc" "-lm" "-lclang_rt.builtins-armv6m.a" -+// CHECK-V6M-LIBSTDCXX-SAME: "-lc" "-lm" "-lclang_rt.builtins-armv6m" - // CHECK-V6M-LIBSTDCXX-SAME: "-o" "{{.*}}.o" - - // RUN: %clangxx -no-canonical-prefixes %s -### -o %t.o 2>&1 \ diff --git a/pkgs/development/compilers/llvm/10/clang/default.nix b/pkgs/development/compilers/llvm/10/clang/default.nix deleted file mode 100644 index ad4e913041583..0000000000000 --- a/pkgs/development/compilers/llvm/10/clang/default.nix +++ /dev/null @@ -1,133 +0,0 @@ -{ lib, stdenv, llvm_meta, fetch, substituteAll, cmake, libxml2, libllvm, version, clang-tools-extra_src, python3 -, buildLlvmTools -, fixDarwinDylibNames -, enableManpages ? false -}: - -let - self = stdenv.mkDerivation ({ - pname = "clang"; - inherit version; - - src = fetch "clang" "091bvcny2lh32zy8f3m9viayyhb2zannrndni7325rl85cwgr6pr"; - - unpackPhase = '' - unpackFile $src - mv clang-${version}* clang - sourceRoot=$PWD/clang - unpackFile ${clang-tools-extra_src} - mv clang-tools-extra-* $sourceRoot/tools/extra - ''; - - nativeBuildInputs = [ cmake python3 ] - ++ lib.optional enableManpages python3.pkgs.sphinx - ++ lib.optional stdenv.hostPlatform.isDarwin fixDarwinDylibNames; - - buildInputs = [ libxml2 libllvm ]; - - cmakeFlags = [ - "-DCLANGD_BUILD_XPC=OFF" - "-DLLVM_ENABLE_RTTI=ON" - ] ++ lib.optionals enableManpages [ - "-DCLANG_INCLUDE_DOCS=ON" - "-DLLVM_ENABLE_SPHINX=ON" - "-DSPHINX_OUTPUT_MAN=ON" - "-DSPHINX_OUTPUT_HTML=OFF" - "-DSPHINX_WARNINGS_AS_ERRORS=OFF" - ] ++ lib.optionals (stdenv.hostPlatform != stdenv.buildPlatform) [ - "-DLLVM_TABLEGEN_EXE=${buildLlvmTools.llvm}/bin/llvm-tblgen" - "-DCLANG_TABLEGEN=${buildLlvmTools.libclang.dev}/bin/clang-tblgen" - ]; - - patches = [ - ./purity.patch - # https://reviews.llvm.org/D51899 - ./compiler-rt-baremetal.patch - ./gnu-install-dirs.patch - (substituteAll { - src = ../../clang-6-10-LLVMgold-path.patch; - libllvmLibdir = "${libllvm.lib}/lib"; - }) - ]; - - postPatch = '' - sed -i -e 's/DriverArgs.hasArg(options::OPT_nostdlibinc)/true/' \ - -e 's/Args.hasArg(options::OPT_nostdlibinc)/true/' \ - lib/Driver/ToolChains/*.cpp - '' + lib.optionalString stdenv.hostPlatform.isMusl '' - sed -i -e 's/lgcc_s/lgcc_eh/' lib/Driver/ToolChains/*.cpp - '' + lib.optionalString stdenv.hostPlatform.isDarwin '' - substituteInPlace tools/extra/clangd/CMakeLists.txt \ - --replace "NOT HAVE_CXX_ATOMICS64_WITHOUT_LIB" FALSE - ''; - - outputs = [ "out" "lib" "dev" "python" ]; - - postInstall = '' - ln -sv $out/bin/clang $out/bin/cpp - - # Move libclang to 'lib' output - moveToOutput "lib/libclang.*" "$lib" - moveToOutput "lib/libclang-cpp.*" "$lib" - substituteInPlace $out/lib/cmake/clang/ClangTargets-release.cmake \ - --replace "\''${_IMPORT_PREFIX}/lib/libclang." "$lib/lib/libclang." \ - --replace "\''${_IMPORT_PREFIX}/lib/libclang-cpp." "$lib/lib/libclang-cpp." - - mkdir -p $python/bin $python/share/{clang,scan-view} - mv $out/bin/{git-clang-format,scan-view} $python/bin - if [ -e $out/bin/set-xcode-analyzer ]; then - mv $out/bin/set-xcode-analyzer $python/bin - fi - mv $out/share/clang/*.py $python/share/clang - mv $out/share/scan-view/*.py $python/share/scan-view - rm $out/bin/c-index-test - patchShebangs $python/bin - - mkdir -p $dev/bin - cp bin/clang-tblgen $dev/bin - ''; - - passthru = { - inherit libllvm; - isClang = true; - hardeningUnsupportedFlags = [ "fortify3" ]; - }; - - meta = llvm_meta // { - homepage = "https://clang.llvm.org/"; - description = "A C language family frontend for LLVM"; - longDescription = '' - The Clang project provides a language front-end and tooling - infrastructure for languages in the C language family (C, C++, Objective - C/C++, OpenCL, CUDA, and RenderScript) for the LLVM project. - It aims to deliver amazingly fast compiles, extremely useful error and - warning messages and to provide a platform for building great source - level tools. The Clang Static Analyzer and clang-tidy are tools that - automatically find bugs in your code, and are great examples of the sort - of tools that can be built using the Clang frontend as a library to - parse C/C++ code. - ''; - mainProgram = "clang"; - }; - } // lib.optionalAttrs enableManpages { - pname = "clang-manpages"; - - buildPhase = '' - make docs-clang-man - ''; - - installPhase = '' - mkdir -p $out/share/man/man1 - # Manually install clang manpage - cp docs/man/*.1 $out/share/man/man1/ - ''; - - outputs = [ "out" ]; - - doCheck = false; - - meta = llvm_meta // { - description = "man page for Clang ${version}"; - }; - }); -in self diff --git a/pkgs/development/compilers/llvm/10/clang/gnu-install-dirs.patch b/pkgs/development/compilers/llvm/10/clang/gnu-install-dirs.patch deleted file mode 100644 index 454c81875eabb..0000000000000 --- a/pkgs/development/compilers/llvm/10/clang/gnu-install-dirs.patch +++ /dev/null @@ -1,248 +0,0 @@ -diff --git a/CMakeLists.txt b/CMakeLists.txt -index dc1413f4b597..c173531e624f 100644 ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -9,6 +9,8 @@ endif() - if( CMAKE_SOURCE_DIR STREQUAL CMAKE_CURRENT_SOURCE_DIR ) - project(Clang) - -+ include(GNUInstallDirs) -+ - # Rely on llvm-config. - set(CONFIG_OUTPUT) - if(LLVM_CONFIG) -@@ -417,7 +419,7 @@ include_directories(BEFORE - - if (NOT LLVM_INSTALL_TOOLCHAIN_ONLY) - install(DIRECTORY include/clang include/clang-c -- DESTINATION include -+ DESTINATION ${CMAKE_INSTALL_INCLUDEDIR} - COMPONENT clang-headers - FILES_MATCHING - PATTERN "*.def" -@@ -427,7 +429,7 @@ if (NOT LLVM_INSTALL_TOOLCHAIN_ONLY) - ) - - install(DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/include/clang -- DESTINATION include -+ DESTINATION ${CMAKE_INSTALL_INCLUDEDIR} - COMPONENT clang-headers - FILES_MATCHING - PATTERN "CMakeFiles" EXCLUDE -@@ -447,7 +449,7 @@ if (NOT LLVM_INSTALL_TOOLCHAIN_ONLY) - - add_custom_target(bash-autocomplete DEPENDS utils/bash-autocomplete.sh) - install(PROGRAMS utils/bash-autocomplete.sh -- DESTINATION share/clang -+ DESTINATION ${CMAKE_INSTALL_DATADIR}/clang - COMPONENT bash-autocomplete) - if(NOT LLVM_ENABLE_IDE) - add_llvm_install_targets(install-bash-autocomplete -diff --git a/cmake/modules/AddClang.cmake b/cmake/modules/AddClang.cmake -index 577cc11ab015..a4f4481d8442 100644 ---- a/cmake/modules/AddClang.cmake -+++ b/cmake/modules/AddClang.cmake -@@ -114,9 +114,9 @@ macro(add_clang_library name) - install(TARGETS ${name} - COMPONENT ${name} - ${export_to_clangtargets} -- LIBRARY DESTINATION lib${LLVM_LIBDIR_SUFFIX} -- ARCHIVE DESTINATION lib${LLVM_LIBDIR_SUFFIX} -- RUNTIME DESTINATION bin) -+ LIBRARY DESTINATION ${CMAKE_INSTALL_LIBDIR}${LLVM_LIBDIR_SUFFIX} -+ ARCHIVE DESTINATION ${CMAKE_INSTALL_LIBDIR}${LLVM_LIBDIR_SUFFIX} -+ RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) - - if (NOT LLVM_ENABLE_IDE) - add_llvm_install_targets(install-${name} -@@ -160,7 +160,7 @@ macro(add_clang_tool name) - - install(TARGETS ${name} - ${export_to_clangtargets} -- RUNTIME DESTINATION bin -+ RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR} - COMPONENT ${name}) - - if(NOT LLVM_ENABLE_IDE) -@@ -175,7 +175,7 @@ endmacro() - macro(add_clang_symlink name dest) - add_llvm_tool_symlink(${name} ${dest} ALWAYS_GENERATE) - # Always generate install targets -- llvm_install_symlink(${name} ${dest} ALWAYS_GENERATE) -+ llvm_install_symlink(${name} ${dest} ${CMAKE_INSTALL_FULL_BINDIR} ALWAYS_GENERATE) - endmacro() - - function(clang_target_link_libraries target type) -diff --git a/lib/Headers/CMakeLists.txt b/lib/Headers/CMakeLists.txt -index 85c3124234ad..64c48235d914 100644 ---- a/lib/Headers/CMakeLists.txt -+++ b/lib/Headers/CMakeLists.txt -@@ -191,7 +191,7 @@ set_target_properties(clang-resource-headers PROPERTIES - FOLDER "Misc" - RUNTIME_OUTPUT_DIRECTORY "${output_dir}") - --set(header_install_dir lib${LLVM_LIBDIR_SUFFIX}/clang/${CLANG_VERSION}/include) -+set(header_install_dir ${CMAKE_INSTALL_LIBDIR}${LLVM_LIBDIR_SUFFIX}/clang/${CLANG_VERSION}/include) - - install( - FILES ${files} ${generated_files} -diff --git a/tools/c-index-test/CMakeLists.txt b/tools/c-index-test/CMakeLists.txt -index ceef4b08637c..8efad5520ca4 100644 ---- a/tools/c-index-test/CMakeLists.txt -+++ b/tools/c-index-test/CMakeLists.txt -@@ -54,7 +54,7 @@ if (NOT LLVM_INSTALL_TOOLCHAIN_ONLY) - set_property(TARGET c-index-test APPEND PROPERTY INSTALL_RPATH - "@executable_path/../../lib") - else() -- set(INSTALL_DESTINATION bin) -+ set(INSTALL_DESTINATION ${CMAKE_INSTALL_BINDIR}) - endif() - - install(TARGETS c-index-test -diff --git a/tools/clang-format/CMakeLists.txt b/tools/clang-format/CMakeLists.txt -index 35ecdb11253c..d77d75de0094 100644 ---- a/tools/clang-format/CMakeLists.txt -+++ b/tools/clang-format/CMakeLists.txt -@@ -21,20 +21,20 @@ if( LLVM_LIB_FUZZING_ENGINE OR LLVM_USE_SANITIZE_COVERAGE ) - endif() - - install(PROGRAMS clang-format-bbedit.applescript -- DESTINATION share/clang -+ DESTINATION ${CMAKE_INSTALL_DATADIR}/clang - COMPONENT clang-format) - install(PROGRAMS clang-format-diff.py -- DESTINATION share/clang -+ DESTINATION ${CMAKE_INSTALL_DATADIR}/clang - COMPONENT clang-format) - install(PROGRAMS clang-format-sublime.py -- DESTINATION share/clang -+ DESTINATION ${CMAKE_INSTALL_DATADIR}/clang - COMPONENT clang-format) - install(PROGRAMS clang-format.el -- DESTINATION share/clang -+ DESTINATION ${CMAKE_INSTALL_DATADIR}/clang - COMPONENT clang-format) - install(PROGRAMS clang-format.py -- DESTINATION share/clang -+ DESTINATION ${CMAKE_INSTALL_DATADIR}/clang - COMPONENT clang-format) - install(PROGRAMS git-clang-format -- DESTINATION bin -+ DESTINATION ${CMAKE_INSTALL_BINDIR} - COMPONENT clang-format) -diff --git a/tools/clang-rename/CMakeLists.txt b/tools/clang-rename/CMakeLists.txt -index cda8e29ec5b1..0134d8ccd70b 100644 ---- a/tools/clang-rename/CMakeLists.txt -+++ b/tools/clang-rename/CMakeLists.txt -@@ -19,8 +19,8 @@ clang_target_link_libraries(clang-rename - ) - - install(PROGRAMS clang-rename.py -- DESTINATION share/clang -+ DESTINATION ${CMAKE_INSTALL_DATADIR}/clang - COMPONENT clang-rename) - install(PROGRAMS clang-rename.el -- DESTINATION share/clang -+ DESTINATION ${CMAKE_INSTALL_DATADIR}/clang - COMPONENT clang-rename) -diff --git a/tools/diagtool/CMakeLists.txt b/tools/diagtool/CMakeLists.txt -index a95444be40ee..136d96d9bf5b 100644 ---- a/tools/diagtool/CMakeLists.txt -+++ b/tools/diagtool/CMakeLists.txt -@@ -21,7 +21,7 @@ clang_target_link_libraries(diagtool - if (NOT LLVM_INSTALL_TOOLCHAIN_ONLY) - install(TARGETS diagtool - COMPONENT diagtool -- RUNTIME DESTINATION bin) -+ RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) - - if (NOT LLVM_ENABLE_IDE) - add_llvm_install_targets(install-diagtool -diff --git a/tools/libclang/CMakeLists.txt b/tools/libclang/CMakeLists.txt -index 973655361f71..0181002e4e3b 100644 ---- a/tools/libclang/CMakeLists.txt -+++ b/tools/libclang/CMakeLists.txt -@@ -141,7 +141,7 @@ endif() - if(INTERNAL_INSTALL_PREFIX) - set(LIBCLANG_HEADERS_INSTALL_DESTINATION "${INTERNAL_INSTALL_PREFIX}/include") - else() -- set(LIBCLANG_HEADERS_INSTALL_DESTINATION include) -+ set(LIBCLANG_HEADERS_INSTALL_DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}) - endif() - - install(DIRECTORY ../../include/clang-c -@@ -172,7 +172,7 @@ foreach(PythonVersion ${CLANG_PYTHON_BINDINGS_VERSIONS}) - COMPONENT - libclang-python-bindings - DESTINATION -- "lib${LLVM_LIBDIR_SUFFIX}/python${PythonVersion}/site-packages") -+ "${CMAKE_INSTALL_LIBDIR}${LLVM_LIBDIR_SUFFIX}/python${PythonVersion}/site-packages") - endforeach() - if(NOT LLVM_ENABLE_IDE) - add_custom_target(libclang-python-bindings) -diff --git a/tools/scan-build/CMakeLists.txt b/tools/scan-build/CMakeLists.txt -index 28241245fcb7..d6b59f02fc2a 100644 ---- a/tools/scan-build/CMakeLists.txt -+++ b/tools/scan-build/CMakeLists.txt -@@ -42,7 +42,7 @@ if(CLANG_INSTALL_SCANBUILD) - DEPENDS ${CMAKE_CURRENT_SOURCE_DIR}/bin/${BinFile}) - list(APPEND Depends ${CMAKE_BINARY_DIR}/bin/${BinFile}) - install(PROGRAMS bin/${BinFile} -- DESTINATION bin -+ DESTINATION ${CMAKE_INSTALL_BINDIR} - COMPONENT scan-build) - endforeach() - -@@ -56,7 +56,7 @@ if(CLANG_INSTALL_SCANBUILD) - DEPENDS ${CMAKE_CURRENT_SOURCE_DIR}/libexec/${LibexecFile}) - list(APPEND Depends ${CMAKE_BINARY_DIR}/libexec/${LibexecFile}) - install(PROGRAMS libexec/${LibexecFile} -- DESTINATION libexec -+ DESTINATION ${CMAKE_INSTALL_LIBEXECDIR} - COMPONENT scan-build) - endforeach() - -@@ -84,7 +84,7 @@ if(CLANG_INSTALL_SCANBUILD) - DEPENDS ${CMAKE_CURRENT_SOURCE_DIR}/share/scan-build/${ShareFile}) - list(APPEND Depends ${CMAKE_BINARY_DIR}/share/scan-build/${ShareFile}) - install(FILES share/scan-build/${ShareFile} -- DESTINATION share/scan-build -+ DESTINATION ${CMAKE_INSTALL_DATADIR}/scan-build - COMPONENT scan-build) - endforeach() - -diff --git a/tools/scan-view/CMakeLists.txt b/tools/scan-view/CMakeLists.txt -index 22edb974bac7..9f140a9a4538 100644 ---- a/tools/scan-view/CMakeLists.txt -+++ b/tools/scan-view/CMakeLists.txt -@@ -22,7 +22,7 @@ if(CLANG_INSTALL_SCANVIEW) - DEPENDS ${CMAKE_CURRENT_SOURCE_DIR}/bin/${BinFile}) - list(APPEND Depends ${CMAKE_BINARY_DIR}/bin/${BinFile}) - install(PROGRAMS bin/${BinFile} -- DESTINATION bin -+ DESTINATION ${CMAKE_INSTALL_BINDIR} - COMPONENT scan-view) - endforeach() - -@@ -36,7 +36,7 @@ if(CLANG_INSTALL_SCANVIEW) - DEPENDS ${CMAKE_CURRENT_SOURCE_DIR}/share/${ShareFile}) - list(APPEND Depends ${CMAKE_BINARY_DIR}/share/scan-view/${ShareFile}) - install(FILES share/${ShareFile} -- DESTINATION share/scan-view -+ DESTINATION ${CMAKE_INSTALL_DATADIR}/scan-view - COMPONENT scan-view) - endforeach() - -diff --git a/utils/hmaptool/CMakeLists.txt b/utils/hmaptool/CMakeLists.txt -index 62f2de0cb15c..6aa66825b6ec 100644 ---- a/utils/hmaptool/CMakeLists.txt -+++ b/utils/hmaptool/CMakeLists.txt -@@ -10,7 +10,7 @@ add_custom_command(OUTPUT ${CMAKE_BINARY_DIR}/${CMAKE_CFG_INTDIR}/bin/${CLANG_HM - - list(APPEND Depends ${CMAKE_BINARY_DIR}/${CMAKE_CFG_INTDIR}/bin/${CLANG_HMAPTOOL}) - install(PROGRAMS ${CLANG_HMAPTOOL} -- DESTINATION bin -+ DESTINATION ${CMAKE_INSTALL_BINDIR} - COMPONENT hmaptool) - - add_custom_target(hmaptool ALL DEPENDS ${Depends}) diff --git a/pkgs/development/compilers/llvm/10/clang/purity.patch b/pkgs/development/compilers/llvm/10/clang/purity.patch deleted file mode 100644 index a6729a9b004e0..0000000000000 --- a/pkgs/development/compilers/llvm/10/clang/purity.patch +++ /dev/null @@ -1,30 +0,0 @@ -From 4add81bba40dcec62c4ea4481be8e35ac53e89d8 Mon Sep 17 00:00:00 2001 -From: Will Dietz <w@wdtz.org> -Date: Thu, 18 May 2017 11:56:12 -0500 -Subject: [PATCH] "purity" patch for 5.0 - ---- - lib/Driver/ToolChains/Gnu.cpp | 7 ------- - 1 file changed, 7 deletions(-) - -diff --git a/lib/Driver/ToolChains/Gnu.cpp b/lib/Driver/ToolChains/Gnu.cpp -index fe3c0191bb..c6a482bece 100644 ---- a/lib/Driver/ToolChains/Gnu.cpp -+++ b/lib/Driver/ToolChains/Gnu.cpp -@@ -494,13 +494,6 @@ void tools::gnutools::Linker::ConstructJob(Compilation &C, const JobAction &JA, - if (!IsStatic) { - if (Args.hasArg(options::OPT_rdynamic)) - CmdArgs.push_back("-export-dynamic"); -- -- if (!Args.hasArg(options::OPT_shared) && !IsStaticPIE) { -- const std::string Loader = -- D.DyldPrefix + ToolChain.getDynamicLinker(Args); -- CmdArgs.push_back("-dynamic-linker"); -- CmdArgs.push_back(Args.MakeArgString(Loader)); -- } - } - - CmdArgs.push_back("-o"); --- -2.11.0 - diff --git a/pkgs/development/compilers/llvm/10/compiler-rt/X86-support-extension.patch b/pkgs/development/compilers/llvm/10/compiler-rt/X86-support-extension.patch deleted file mode 100644 index f6f9336ad5ad3..0000000000000 --- a/pkgs/development/compilers/llvm/10/compiler-rt/X86-support-extension.patch +++ /dev/null @@ -1,23 +0,0 @@ -diff --git a/lib/builtins/CMakeLists.txt b/lib/builtins/CMakeLists.txt -index 3a66dd9c3fb..7efc85d9f9f 100644 ---- a/lib/builtins/CMakeLists.txt -+++ b/lib/builtins/CMakeLists.txt -@@ -301,6 +301,10 @@ if (NOT MSVC) - i386/umoddi3.S - ) - -+ set(i486_SOURCES ${i386_SOURCES}) -+ set(i586_SOURCES ${i386_SOURCES}) -+ set(i686_SOURCES ${i386_SOURCES}) -+ - if (WIN32) - set(i386_SOURCES - ${i386_SOURCES} -@@ -608,6 +612,7 @@ else () - endif() - - foreach (arch ${BUILTIN_SUPPORTED_ARCH}) -+ message("arch: ${arch}") - if (CAN_TARGET_${arch}) - # For ARM archs, exclude any VFP builtins if VFP is not supported - if (${arch} MATCHES "^(arm|armhf|armv7|armv7s|armv7k|armv7m|armv7em)$") diff --git a/pkgs/development/compilers/llvm/10/compiler-rt/armv7l.patch b/pkgs/development/compilers/llvm/10/compiler-rt/armv7l.patch deleted file mode 100644 index 120cfe6feb2a6..0000000000000 --- a/pkgs/development/compilers/llvm/10/compiler-rt/armv7l.patch +++ /dev/null @@ -1,32 +0,0 @@ -diff -ur compiler-rt-10.0.0.src/cmake/builtin-config-ix.cmake compiler-rt-10.0.0.src-patched/cmake/builtin-config-ix.cmake ---- compiler-rt-10.0.0.src/cmake/builtin-config-ix.cmake 2020-03-24 00:01:02.000000000 +0900 -+++ compiler-rt-10.0.0.src-patched/cmake/builtin-config-ix.cmake 2020-05-10 03:42:00.883450706 +0900 -@@ -24,7 +24,7 @@ - - - set(ARM64 aarch64) --set(ARM32 arm armhf armv6m armv7m armv7em armv7 armv7s armv7k) -+set(ARM32 arm armhf armv6m armv7m armv7em armv7 armv7s armv7k armv7l) - set(HEXAGON hexagon) - set(X86 i386) - set(X86_64 x86_64) -diff -ur compiler-rt-10.0.0.src/lib/builtins/CMakeLists.txt compiler-rt-10.0.0.src-patched/lib/builtins/CMakeLists.txt ---- compiler-rt-10.0.0.src/lib/builtins/CMakeLists.txt 2020-03-24 00:01:02.000000000 +0900 -+++ compiler-rt-10.0.0.src-patched/lib/builtins/CMakeLists.txt 2020-05-10 03:44:49.468579650 +0900 -@@ -474,6 +474,7 @@ - set(armv7_SOURCES ${arm_SOURCES}) - set(armv7s_SOURCES ${arm_SOURCES}) - set(armv7k_SOURCES ${arm_SOURCES}) -+set(armv7l_SOURCES ${arm_SOURCES}) - set(arm64_SOURCES ${aarch64_SOURCES}) - - # macho_embedded archs -@@ -595,7 +596,7 @@ - foreach (arch ${BUILTIN_SUPPORTED_ARCH}) - if (CAN_TARGET_${arch}) - # For ARM archs, exclude any VFP builtins if VFP is not supported -- if (${arch} MATCHES "^(arm|armhf|armv7|armv7s|armv7k|armv7m|armv7em)$") -+ if (${arch} MATCHES "^(arm|armhf|armv7|armv7s|armv7k|armv7l|armv7m|armv7em)$") - string(REPLACE ";" " " _TARGET_${arch}_CFLAGS "${TARGET_${arch}_CFLAGS}") - check_compile_definition(__VFP_FP__ "${CMAKE_C_FLAGS} ${_TARGET_${arch}_CFLAGS}" COMPILER_RT_HAS_${arch}_VFP) - if(NOT COMPILER_RT_HAS_${arch}_VFP) diff --git a/pkgs/development/compilers/llvm/10/compiler-rt/default.nix b/pkgs/development/compilers/llvm/10/compiler-rt/default.nix deleted file mode 100644 index 3702509d77564..0000000000000 --- a/pkgs/development/compilers/llvm/10/compiler-rt/default.nix +++ /dev/null @@ -1,131 +0,0 @@ -{ lib, stdenv, llvm_meta, version, fetch, cmake, python3, libllvm, libcxxabi, libxcrypt -, doFakeLibgcc ? stdenv.hostPlatform.isFreeBSD -}: - -let - - useLLVM = stdenv.hostPlatform.useLLVM or false; - bareMetal = stdenv.hostPlatform.parsed.kernel.name == "none"; - haveLibc = stdenv.cc.libc != null; - inherit (stdenv.hostPlatform) isMusl; - -in - -stdenv.mkDerivation { - pname = "compiler-rt" + lib.optionalString (haveLibc) "-libc"; - inherit version; - src = fetch "compiler-rt" "1yjqjri753w0fzmxcyz687nvd97sbc9rsqrxzpq720na47hwh3fr"; - - nativeBuildInputs = [ cmake python3 libllvm.dev ]; - buildInputs = lib.optional stdenv.hostPlatform.isDarwin libcxxabi; - - env.NIX_CFLAGS_COMPILE = toString [ - "-DSCUDO_DEFAULT_OPTIONS=DeleteSizeMismatch=0:DeallocationTypeMismatch=0" - ]; - - cmakeFlags = [ - "-DCOMPILER_RT_DEFAULT_TARGET_ONLY=ON" - "-DCMAKE_C_COMPILER_TARGET=${stdenv.hostPlatform.config}" - "-DCMAKE_ASM_COMPILER_TARGET=${stdenv.hostPlatform.config}" - ] ++ lib.optionals (haveLibc && stdenv.hostPlatform.isGnu) [ - "-DSANITIZER_COMMON_CFLAGS=-I${libxcrypt}/include" - ] ++ lib.optionals (useLLVM || bareMetal || isMusl) [ - "-DCOMPILER_RT_BUILD_SANITIZERS=OFF" - "-DCOMPILER_RT_BUILD_XRAY=OFF" - "-DCOMPILER_RT_BUILD_LIBFUZZER=OFF" - ] ++ lib.optionals (useLLVM || bareMetal) [ - "-DCOMPILER_RT_BUILD_PROFILE=OFF" - ] ++ lib.optionals ((useLLVM || bareMetal) && !haveLibc) [ - "-DCMAKE_C_COMPILER_WORKS=ON" - "-DCMAKE_CXX_COMPILER_WORKS=ON" - "-DCOMPILER_RT_BAREMETAL_BUILD=ON" - "-DCMAKE_SIZEOF_VOID_P=${toString (stdenv.hostPlatform.parsed.cpu.bits / 8)}" - ] ++ lib.optionals (useLLVM) [ - "-DCOMPILER_RT_BUILD_BUILTINS=ON" - #https://stackoverflow.com/questions/53633705/cmake-the-c-compiler-is-not-able-to-compile-a-simple-test-program - "-DCMAKE_TRY_COMPILE_TARGET_TYPE=STATIC_LIBRARY" - ] ++ lib.optionals (bareMetal) [ - "-DCOMPILER_RT_OS_DIR=baremetal" - ] ++ lib.optionals (stdenv.hostPlatform.isDarwin) [ - "-DDARWIN_macosx_OVERRIDE_SDK_VERSION=ON" - "-DDARWIN_osx_ARCHS=${stdenv.hostPlatform.darwinArch}" - "-DDARWIN_osx_BUILTIN_ARCHS=${stdenv.hostPlatform.darwinArch}" - ]; - - outputs = [ "out" "dev" ]; - - patches = [ - ../../common/compiler-rt/7-12-codesign.patch # Revert compiler-rt commit that makes codesign mandatory - ./find-darwin-sdk-version.patch # don't test for macOS being >= 10.15 - ./gnu-install-dirs.patch - ../../common/compiler-rt/libsanitizer-no-cyclades-11.patch - ./X86-support-extension.patch # backported from LLVM 11 - # Fix build on armv6l - ../../common/compiler-rt/armv6-mcr-dmb.patch - ../../common/compiler-rt/armv6-sync-ops-no-thumb.patch - ../../common/compiler-rt/armv6-no-ldrexd-strexd.patch - ] ++ lib.optional stdenv.hostPlatform.isAarch32 ./armv7l.patch; - - # TSAN requires XPC on Darwin, which we have no public/free source files for. We can depend on the Apple frameworks - # to get it, but they're unfree. Since LLVM is rather central to the stdenv, we patch out TSAN support so that Hydra - # can build this. If we didn't do it, basically the entire nixpkgs on Darwin would have an unfree dependency and we'd - # get no binary cache for the entire platform. If you really find yourself wanting the TSAN, make this controllable by - # a flag and turn the flag off during the stdenv build. - postPatch = lib.optionalString (!stdenv.isDarwin) '' - substituteInPlace cmake/builtin-config-ix.cmake \ - --replace 'set(X86 i386)' 'set(X86 i386 i486 i586 i686)' - substituteInPlace cmake/config-ix.cmake \ - --replace 'set(X86 i386)' 'set(X86 i386 i486 i586 i686)' - '' + lib.optionalString stdenv.isDarwin '' - substituteInPlace cmake/config-ix.cmake \ - --replace 'set(COMPILER_RT_HAS_TSAN TRUE)' 'set(COMPILER_RT_HAS_TSAN FALSE)' - '' + lib.optionalString (useLLVM) '' - substituteInPlace lib/builtins/int_util.c \ - --replace "#include <stdlib.h>" "" - substituteInPlace lib/builtins/clear_cache.c \ - --replace "#include <assert.h>" "" - substituteInPlace lib/builtins/cpu_model.c \ - --replace "#include <assert.h>" "" - ''; - - preConfigure = lib.optionalString (useLLVM && !haveLibc) '' - cmakeFlagsArray+=(-DCMAKE_C_FLAGS="-nodefaultlibs -ffreestanding") - ''; - - # Hack around weird upsream RPATH bug - postInstall = lib.optionalString (stdenv.hostPlatform.isDarwin || stdenv.hostPlatform.isWasm) '' - ln -s "$out/lib"/*/* "$out/lib" - '' + lib.optionalString (useLLVM) '' - ln -s $out/lib/*/clang_rt.crtbegin-*.o $out/lib/crtbegin.o - ln -s $out/lib/*/clang_rt.crtend-*.o $out/lib/crtend.o - ln -s $out/lib/*/clang_rt.crtbegin-*.o $out/lib/crtbeginS.o - ln -s $out/lib/*/clang_rt.crtend-*.o $out/lib/crtendS.o - ln -s $out/lib/*/clang_rt.crtbegin_shared-*.o $out/lib/crtbeginS.o - ln -s $out/lib/*/clang_rt.crtend_shared-*.o $out/lib/crtendS.o - '' - # See https://reviews.llvm.org/D37278 for why android exception - + lib.optionalString (stdenv.hostPlatform.isx86_32 && !stdenv.hostPlatform.isAndroid) '' - for f in $out/lib/*/*builtins-i?86*; do - ln -s "$f" $(echo "$f" | sed -e 's/builtins-i.86/builtins-i386/') - done - '' + lib.optionalString doFakeLibgcc '' - ln -s $out/lib/freebsd/libclang_rt.builtins-*.a $out/lib/libgcc.a - ''; - - meta = llvm_meta // { - homepage = "https://compiler-rt.llvm.org/"; - description = "Compiler runtime libraries"; - longDescription = '' - The compiler-rt project provides highly tuned implementations of the - low-level code generator support routines like "__fixunsdfdi" and other - calls generated when a target doesn't have a short sequence of native - instructions to implement a core IR operation. It also provides - implementations of run-time libraries for dynamic testing tools such as - AddressSanitizer, ThreadSanitizer, MemorySanitizer, and DataFlowSanitizer. - ''; - # "All of the code in the compiler-rt project is dual licensed under the MIT - # license and the UIUC License (a BSD-like license)": - license = with lib.licenses; [ mit ncsa ]; - broken = stdenv.hostPlatform.isDarwin && stdenv.hostPlatform.isAarch64; - }; -} diff --git a/pkgs/development/compilers/llvm/10/compiler-rt/find-darwin-sdk-version.patch b/pkgs/development/compilers/llvm/10/compiler-rt/find-darwin-sdk-version.patch deleted file mode 100644 index fc16ddda76b73..0000000000000 --- a/pkgs/development/compilers/llvm/10/compiler-rt/find-darwin-sdk-version.patch +++ /dev/null @@ -1,62 +0,0 @@ ---- a/cmake/Modules/CompilerRTDarwinUtils.cmake 2020-01-25 23:13:55.000000000 +0100 -+++ b/cmake/Modules/CompilerRTDarwinUtils.cmake 2020-01-25 23:19:37.000000000 +0100 -@@ -43,41 +43,6 @@ - set(DARWIN_${sdk_name}_CACHED_SYSROOT ${var_internal} CACHE STRING "Darwin SDK path for SDK ${sdk_name}." FORCE) - endfunction() - --function(find_darwin_sdk_version var sdk_name) -- # We deliberately don't cache the result here because -- # CMake's caching causes too many problems. -- set(result_process 1) -- if(NOT DARWIN_PREFER_PUBLIC_SDK) -- # Let's first try the internal SDK, otherwise use the public SDK. -- execute_process( -- COMMAND xcrun --sdk ${sdk_name}.internal --show-sdk-version -- RESULT_VARIABLE result_process -- OUTPUT_VARIABLE var_internal -- OUTPUT_STRIP_TRAILING_WHITESPACE -- ERROR_FILE /dev/null -- ) -- endif() -- if((NOT ${result_process} EQUAL 0) OR "" STREQUAL "${var_internal}") -- execute_process( -- COMMAND xcrun --sdk ${sdk_name} --show-sdk-version -- RESULT_VARIABLE result_process -- OUTPUT_VARIABLE var_internal -- OUTPUT_STRIP_TRAILING_WHITESPACE -- ERROR_FILE /dev/null -- ) -- endif() -- if(NOT result_process EQUAL 0) -- message(FATAL_ERROR -- "Failed to determine SDK version for \"${sdk_name}\" SDK") -- endif() -- # Check reported version looks sane. -- if (NOT "${var_internal}" MATCHES "^[0-9]+\\.[0-9]+(\\.[0-9]+)?$") -- message(FATAL_ERROR -- "Reported SDK version \"${var_internal}\" does not look like a version") -- endif() -- set(${var} ${var_internal} PARENT_SCOPE) --endfunction() -- - # There isn't a clear mapping of what architectures are supported with a given - # target platform, but ld's version output does list the architectures it can - # link for. -@@ -119,17 +84,6 @@ - foreach(flag ${DARWIN_${os}_LINK_FLAGS}) - set(os_linker_flags "${os_linker_flags} ${flag}") - endforeach() -- -- # Disable building for i386 for macOS SDK >= 10.15. The SDK doesn't support -- # linking for i386 and the corresponding OS doesn't allow running macOS i386 -- # binaries. -- if ("${os}" STREQUAL "osx") -- find_darwin_sdk_version(macosx_sdk_version "macosx") -- if ("${macosx_sdk_version}" VERSION_GREATER 10.15 OR "${macosx_sdk_version}" VERSION_EQUAL 10.15) -- message(STATUS "Disabling i386 slice for ${valid_archs}") -- list(REMOVE_ITEM archs "i386") -- endif() -- endif() - endif() - - # The simple program will build for x86_64h on the simulator because it is diff --git a/pkgs/development/compilers/llvm/10/compiler-rt/gnu-install-dirs.patch b/pkgs/development/compilers/llvm/10/compiler-rt/gnu-install-dirs.patch deleted file mode 100644 index db0bd006eaf20..0000000000000 --- a/pkgs/development/compilers/llvm/10/compiler-rt/gnu-install-dirs.patch +++ /dev/null @@ -1,129 +0,0 @@ -diff --git a/CMakeLists.txt b/CMakeLists.txt -index 8d768a404f21..74551dc5a004 100644 ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -12,6 +12,7 @@ endif() - # Check if compiler-rt is built as a standalone project. - if (CMAKE_SOURCE_DIR STREQUAL CMAKE_CURRENT_SOURCE_DIR OR COMPILER_RT_STANDALONE_BUILD) - project(CompilerRT C CXX ASM) -+ include(GNUInstallDirs) - set(COMPILER_RT_STANDALONE_BUILD TRUE) - set_property(GLOBAL PROPERTY USE_FOLDERS ON) - endif() -diff --git a/cmake/Modules/AddCompilerRT.cmake b/cmake/Modules/AddCompilerRT.cmake -index 35a48c6af29c..e4300f256091 100644 ---- a/cmake/Modules/AddCompilerRT.cmake -+++ b/cmake/Modules/AddCompilerRT.cmake -@@ -493,7 +493,7 @@ macro(add_compiler_rt_resource_file target_name file_name component) - add_custom_target(${target_name} DEPENDS ${dst_file}) - # Install in Clang resource directory. - install(FILES ${file_name} -- DESTINATION ${COMPILER_RT_INSTALL_PATH}/share -+ DESTINATION ${COMPILER_RT_INSTALL_PATH}/${CMAKE_INSTALL_FULL_DATADIR} - COMPONENT ${component}) - add_dependencies(${component} ${target_name}) - -@@ -510,7 +510,7 @@ macro(add_compiler_rt_script name) - add_custom_target(${name} DEPENDS ${dst}) - install(FILES ${dst} - PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE -- DESTINATION ${COMPILER_RT_INSTALL_PATH}/bin) -+ DESTINATION ${COMPILER_RT_INSTALL_PATH}/${CMAKE_INSTALL_FULL_BINDIR}) - endmacro(add_compiler_rt_script src name) - - # Builds custom version of libc++ and installs it in <prefix>. -diff --git a/cmake/Modules/CompilerRTDarwinUtils.cmake b/cmake/Modules/CompilerRTDarwinUtils.cmake -index 9f501a61c4b6..f9a0d92dbca0 100644 ---- a/cmake/Modules/CompilerRTDarwinUtils.cmake -+++ b/cmake/Modules/CompilerRTDarwinUtils.cmake -@@ -440,7 +440,7 @@ macro(darwin_add_embedded_builtin_libraries) - set(DARWIN_macho_embedded_LIBRARY_OUTPUT_DIR - ${COMPILER_RT_OUTPUT_DIR}/lib/macho_embedded) - set(DARWIN_macho_embedded_LIBRARY_INSTALL_DIR -- ${COMPILER_RT_INSTALL_PATH}/lib/macho_embedded) -+ ${COMPILER_RT_INSTALL_PATH}/${CMAKE_INSTALL_FULL_LIBDIR}/macho_embedded) - - set(CFLAGS_armv7 "-target thumbv7-apple-darwin-eabi") - set(CFLAGS_i386 "-march=pentium") -diff --git a/cmake/Modules/CompilerRTUtils.cmake b/cmake/Modules/CompilerRTUtils.cmake -index 6e672b1e1818..64999709958e 100644 ---- a/cmake/Modules/CompilerRTUtils.cmake -+++ b/cmake/Modules/CompilerRTUtils.cmake -@@ -371,7 +371,7 @@ endfunction() - function(get_compiler_rt_install_dir arch install_dir) - if(LLVM_ENABLE_PER_TARGET_RUNTIME_DIR AND NOT APPLE) - get_compiler_rt_target(${arch} target) -- set(${install_dir} ${COMPILER_RT_INSTALL_PATH}/lib/${target} PARENT_SCOPE) -+ set(${install_dir} ${COMPILER_RT_INSTALL_PATH}/${CMAKE_INSTALL_FULL_LIBDIR}/${target} PARENT_SCOPE) - else() - set(${install_dir} ${COMPILER_RT_LIBRARY_INSTALL_DIR} PARENT_SCOPE) - endif() -diff --git a/cmake/base-config-ix.cmake b/cmake/base-config-ix.cmake -index b4b87aa53073..f1ae8668837c 100644 ---- a/cmake/base-config-ix.cmake -+++ b/cmake/base-config-ix.cmake -@@ -65,11 +65,11 @@ if (LLVM_TREE_AVAILABLE) - else() - # Take output dir and install path from the user. - set(COMPILER_RT_OUTPUT_DIR ${CMAKE_CURRENT_BINARY_DIR} CACHE PATH -- "Path where built compiler-rt libraries should be stored.") -+ "Path where built compiler-rt build artifacts should be stored.") - set(COMPILER_RT_EXEC_OUTPUT_DIR ${CMAKE_CURRENT_BINARY_DIR}/bin CACHE PATH - "Path where built compiler-rt executables should be stored.") -- set(COMPILER_RT_INSTALL_PATH ${CMAKE_INSTALL_PREFIX} CACHE PATH -- "Path where built compiler-rt libraries should be installed.") -+ set(COMPILER_RT_INSTALL_PATH "" CACHE PATH -+ "Prefix where built compiler-rt artifacts should be installed, comes before CMAKE_INSTALL_PREFIX.") - option(COMPILER_RT_INCLUDE_TESTS "Generate and build compiler-rt unit tests." OFF) - option(COMPILER_RT_ENABLE_WERROR "Fail and stop if warning is triggered" OFF) - # Use a host compiler to compile/link tests. -@@ -97,7 +97,7 @@ else(LLVM_ENABLE_PER_TARGET_RUNTIME_DIR) - set(COMPILER_RT_LIBRARY_OUTPUT_DIR - ${COMPILER_RT_OUTPUT_DIR}/lib/${COMPILER_RT_OS_DIR}) - set(COMPILER_RT_LIBRARY_INSTALL_DIR -- ${COMPILER_RT_INSTALL_PATH}/lib/${COMPILER_RT_OS_DIR}) -+ ${COMPILER_RT_INSTALL_PATH}/${CMAKE_INSTALL_FULL_LIBDIR}/${COMPILER_RT_OS_DIR}) - endif() - - if(APPLE) -diff --git a/include/CMakeLists.txt b/include/CMakeLists.txt -index d47d7baeb118..507c8e5c713e 100644 ---- a/include/CMakeLists.txt -+++ b/include/CMakeLists.txt -@@ -62,22 +62,22 @@ set_target_properties(compiler-rt-headers PROPERTIES FOLDER "Compiler-RT Misc") - install(FILES ${SANITIZER_HEADERS} - COMPONENT compiler-rt-headers - PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ -- DESTINATION ${COMPILER_RT_INSTALL_PATH}/include/sanitizer) -+ DESTINATION ${COMPILER_RT_INSTALL_PATH}/${CMAKE_INSTALL_FULL_INCLUDEDIR}/sanitizer) - # Install fuzzer headers. - install(FILES ${FUZZER_HEADERS} - COMPONENT compiler-rt-headers - PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ -- DESTINATION ${COMPILER_RT_INSTALL_PATH}/include/fuzzer) -+ DESTINATION ${COMPILER_RT_INSTALL_PATH}/${CMAKE_INSTALL_FULL_INCLUDEDIR}/fuzzer) - # Install xray headers. - install(FILES ${XRAY_HEADERS} - COMPONENT compiler-rt-headers - PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ -- DESTINATION ${COMPILER_RT_INSTALL_PATH}/include/xray) -+ DESTINATION ${COMPILER_RT_INSTALL_PATH}/${CMAKE_INSTALL_FULL_INCLUDEDIR}/xray) - # Install profile headers. - install(FILES ${PROFILE_HEADERS} - COMPONENT compiler-rt-headers - PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ -- DESTINATION ${COMPILER_RT_INSTALL_PATH}/include/profile) -+ DESTINATION ${COMPILER_RT_INSTALL_PATH}/${CMAKE_INSTALL_FULL_INCLUDEDIR}/profile) - - if (NOT CMAKE_CONFIGURATION_TYPES) # don't add this for IDEs. - add_custom_target(install-compiler-rt-headers -diff --git a/lib/dfsan/CMakeLists.txt b/lib/dfsan/CMakeLists.txt -index 051215edbeb7..ecce1f52efb0 100644 ---- a/lib/dfsan/CMakeLists.txt -+++ b/lib/dfsan/CMakeLists.txt -@@ -56,4 +56,4 @@ add_custom_command(OUTPUT ${dfsan_abilist_filename} - DEPENDS done_abilist.txt libc_ubuntu1404_abilist.txt) - add_dependencies(dfsan dfsan_abilist) - install(FILES ${dfsan_abilist_filename} -- DESTINATION ${COMPILER_RT_INSTALL_PATH}/share) -+ DESTINATION ${COMPILER_RT_INSTALL_PATH}/${CMAKE_INSTALL_FULL_DATADIR}) diff --git a/pkgs/development/compilers/llvm/10/default.nix b/pkgs/development/compilers/llvm/10/default.nix deleted file mode 100644 index bc72be0ce7a16..0000000000000 --- a/pkgs/development/compilers/llvm/10/default.nix +++ /dev/null @@ -1,269 +0,0 @@ -{ lowPrio, newScope, pkgs, lib, stdenv, cmake -, preLibcCrossHeaders -, libxml2, python3, isl, fetchurl, overrideCC, wrapCCWith, wrapBintoolsWith -, buildLlvmTools # tools, but from the previous stage, for cross -, targetLlvmLibraries # libraries, but from the next stage, for cross -, targetLlvm -# This is the default binutils, but with *this* version of LLD rather -# than the default LLVM version's, if LLD is the choice. We use these for -# the `useLLVM` bootstrapping below. -, bootBintoolsNoLibc ? - if stdenv.targetPlatform.linker == "lld" - then null - else pkgs.bintoolsNoLibc -, bootBintools ? - if stdenv.targetPlatform.linker == "lld" - then null - else pkgs.bintools -}: - -let - release_version = "10.0.1"; - version = release_version; # differentiating these (variables) is important for RCs - - fetch = name: sha256: fetchurl { - url = "https://github.com/llvm/llvm-project/releases/download/llvmorg-${release_version}/${name}-${version}.src.tar.xz"; - inherit sha256; - }; - - clang-tools-extra_src = fetch "clang-tools-extra" "06n1yp638rh24xdxv9v2df0qajxbjz4w59b7dd4ky36drwmpi4yh"; - - inherit (import ../common/common-let.nix { inherit lib release_version; }) llvm_meta; - - tools = lib.makeExtensible (tools: let - callPackage = newScope (tools // { inherit stdenv cmake libxml2 python3 isl release_version version fetch buildLlvmTools; }); - mkExtraBuildCommands0 = cc: '' - rsrc="$out/resource-root" - mkdir "$rsrc" - ln -s "${cc.lib}/lib/clang/${release_version}/include" "$rsrc" - echo "-resource-dir=$rsrc" >> $out/nix-support/cc-cflags - ''; - mkExtraBuildCommands = cc: mkExtraBuildCommands0 cc + '' - ln -s "${targetLlvmLibraries.compiler-rt.out}/lib" "$rsrc/lib" - ln -s "${targetLlvmLibraries.compiler-rt.out}/share" "$rsrc/share" - ''; - - bintoolsNoLibc' = - if bootBintoolsNoLibc == null - then tools.bintoolsNoLibc - else bootBintoolsNoLibc; - bintools' = - if bootBintools == null - then tools.bintools - else bootBintools; - - in { - - libllvm = callPackage ./llvm { - inherit llvm_meta; - }; - - # `llvm` historically had the binaries. When choosing an output explicitly, - # we need to reintroduce `outputSpecified` to get the expected behavior e.g. of lib.get* - llvm = tools.libllvm; - - libclang = callPackage ./clang { - inherit clang-tools-extra_src llvm_meta; - }; - - clang-unwrapped = tools.libclang; - - # disabled until recommonmark supports sphinx 3 - #Llvm-manpages = lowPrio (tools.libllvm.override { - # enableManpages = true; - # python3 = pkgs.python3; # don't use python-boot - #}); - - clang-manpages = lowPrio (tools.libclang.override { - enableManpages = true; - python3 = pkgs.python3; # don't use python-boot - }); - - # disabled until recommonmark supports sphinx 3 - # lldb-manpages = lowPrio (tools.lldb.override { - # enableManpages = true; - # python3 = pkgs.python3; # don't use python-boot - # }); - - # pick clang appropriate for package set we are targeting - clang = - /**/ if stdenv.targetPlatform.libc == null then tools.clangNoLibc - else if stdenv.targetPlatform.useLLVM or false then tools.clangUseLLVM - else if (pkgs.targetPackages.stdenv or stdenv).cc.isGNU then tools.libstdcxxClang - else tools.libcxxClang; - - libstdcxxClang = wrapCCWith rec { - cc = tools.clang-unwrapped; - # libstdcxx is taken from gcc in an ad-hoc way in cc-wrapper. - libcxx = null; - extraPackages = [ - targetLlvmLibraries.compiler-rt - ]; - extraBuildCommands = mkExtraBuildCommands cc; - }; - - libcxxClang = wrapCCWith rec { - cc = tools.clang-unwrapped; - libcxx = targetLlvmLibraries.libcxx; - extraPackages = [ - libcxx.cxxabi - targetLlvmLibraries.compiler-rt - ]; - extraBuildCommands = mkExtraBuildCommands cc; - }; - - lld = callPackage ./lld { - inherit llvm_meta; - }; - - lldb = callPackage ../common/lldb.nix { - src = fetch "lldb" "051p5b04y6z3g730rmc2n2v71lipbw7k69riww3a6sl74myfiaq7"; - patches = [ - ./lldb/procfs.patch - ./lldb/gnu-install-dirs.patch - ]; - inherit llvm_meta; - }; - - # Below, is the LLVM bootstrapping logic. It handles building a - # fully LLVM toolchain from scratch. No GCC toolchain should be - # pulled in. As a consequence, it is very quick to build different - # targets provided by LLVM and we can also build for what GCC - # doesn’t support like LLVM. Probably we should move to some other - # file. - - bintools-unwrapped = callPackage ../common/bintools.nix { }; - - bintoolsNoLibc = wrapBintoolsWith { - bintools = tools.bintools-unwrapped; - libc = preLibcCrossHeaders; - }; - - bintools = wrapBintoolsWith { - bintools = tools.bintools-unwrapped; - }; - - clangUseLLVM = wrapCCWith rec { - cc = tools.clang-unwrapped; - libcxx = targetLlvmLibraries.libcxx; - bintools = bintools'; - extraPackages = [ - libcxx.cxxabi - targetLlvmLibraries.compiler-rt - ] ++ lib.optionals (!stdenv.targetPlatform.isWasm) [ - targetLlvmLibraries.libunwind - ]; - extraBuildCommands = '' - echo "-rtlib=compiler-rt -Wno-unused-command-line-argument" >> $out/nix-support/cc-cflags - echo "-B${targetLlvmLibraries.compiler-rt}/lib" >> $out/nix-support/cc-cflags - '' + lib.optionalString (!stdenv.targetPlatform.isWasm) '' - echo "--unwindlib=libunwind" >> $out/nix-support/cc-cflags - '' + lib.optionalString (!stdenv.targetPlatform.isWasm && stdenv.targetPlatform.useLLVM or false) '' - echo "-lunwind" >> $out/nix-support/cc-ldflags - '' + lib.optionalString stdenv.targetPlatform.isWasm '' - echo "-fno-exceptions" >> $out/nix-support/cc-cflags - '' + mkExtraBuildCommands cc; - }; - - clangNoLibcxx = wrapCCWith rec { - cc = tools.clang-unwrapped; - libcxx = null; - bintools = bintools'; - extraPackages = [ - targetLlvmLibraries.compiler-rt - ]; - extraBuildCommands = '' - echo "-rtlib=compiler-rt" >> $out/nix-support/cc-cflags - echo "-B${targetLlvmLibraries.compiler-rt}/lib" >> $out/nix-support/cc-cflags - echo "-nostdlib++" >> $out/nix-support/cc-cflags - '' + mkExtraBuildCommands cc; - }; - - clangNoLibc = wrapCCWith rec { - cc = tools.clang-unwrapped; - libcxx = null; - bintools = bintoolsNoLibc'; - extraPackages = [ - targetLlvmLibraries.compiler-rt - ]; - extraBuildCommands = '' - echo "-rtlib=compiler-rt" >> $out/nix-support/cc-cflags - echo "-B${targetLlvmLibraries.compiler-rt}/lib" >> $out/nix-support/cc-cflags - '' + mkExtraBuildCommands cc; - }; - - clangNoCompilerRt = wrapCCWith rec { - cc = tools.clang-unwrapped; - libcxx = null; - bintools = bintoolsNoLibc'; - extraPackages = [ ]; - extraBuildCommands = '' - echo "-nostartfiles" >> $out/nix-support/cc-cflags - '' + mkExtraBuildCommands0 cc; - }; - - clangNoCompilerRtWithLibc = wrapCCWith rec { - cc = tools.clang-unwrapped; - libcxx = null; - bintools = bintools'; - extraPackages = [ ]; - extraBuildCommands = mkExtraBuildCommands0 cc; - }; - - }); - - libraries = lib.makeExtensible (libraries: let - callPackage = newScope (libraries // buildLlvmTools // { inherit stdenv cmake libxml2 python3 isl release_version version fetch; }); - in { - - compiler-rt-libc = callPackage ./compiler-rt { - inherit llvm_meta; - stdenv = if stdenv.hostPlatform.useLLVM or false - then overrideCC stdenv buildLlvmTools.clangNoCompilerRtWithLibc - else stdenv; - }; - - compiler-rt-no-libc = callPackage ./compiler-rt { - inherit llvm_meta; - stdenv = if stdenv.hostPlatform.useLLVM or false - then overrideCC stdenv buildLlvmTools.clangNoCompilerRt - else stdenv; - }; - - # N.B. condition is safe because without useLLVM both are the same. - compiler-rt = if stdenv.hostPlatform.isAndroid - then libraries.compiler-rt-libc - else libraries.compiler-rt-no-libc; - - stdenv = overrideCC stdenv buildLlvmTools.clang; - - libcxxStdenv = overrideCC stdenv buildLlvmTools.libcxxClang; - - libcxx = callPackage ./libcxx { - inherit llvm_meta; - stdenv = if stdenv.hostPlatform.useLLVM or false - then overrideCC stdenv buildLlvmTools.clangNoLibcxx - else stdenv; - }; - - libcxxabi = callPackage ./libcxxabi { - inherit llvm_meta; - stdenv = if stdenv.hostPlatform.useLLVM or false - then overrideCC stdenv buildLlvmTools.clangNoLibcxx - else stdenv; - }; - - libunwind = callPackage ./libunwind { - inherit llvm_meta; - stdenv = if stdenv.hostPlatform.useLLVM or false - then overrideCC stdenv buildLlvmTools.clangNoLibcxx - else stdenv; - }; - - openmp = callPackage ./openmp { - inherit llvm_meta targetLlvm; - }; - }); - noExtend = extensible: lib.attrsets.removeAttrs extensible [ "extend" ]; - -in { inherit tools libraries release_version; } // (noExtend libraries) // (noExtend tools) diff --git a/pkgs/development/compilers/llvm/10/libcxx/default.nix b/pkgs/development/compilers/llvm/10/libcxx/default.nix deleted file mode 100644 index cc029ea657cd9..0000000000000 --- a/pkgs/development/compilers/llvm/10/libcxx/default.nix +++ /dev/null @@ -1,88 +0,0 @@ -{ lib, stdenv, llvm_meta, fetch, cmake, python3, fixDarwinDylibNames, version -, cxxabi ? if stdenv.hostPlatform.isFreeBSD then libcxxrt else libcxxabi -, libcxxabi, libcxxrt -, enableShared ? !stdenv.hostPlatform.isStatic -}: - -assert stdenv.isDarwin -> cxxabi.pname == "libcxxabi"; - -stdenv.mkDerivation { - pname = "libcxx"; - inherit version; - - src = fetch "libcxx" "0v78bfr6h2zifvdqnj2wlfk4pvxzrqn3hg1v6lqk3y12bx9p9xny"; - - postUnpack = '' - unpackFile ${libcxxabi.src} - export LIBCXXABI_INCLUDE_DIR="$PWD/$(ls -d libcxxabi-${version}*)/include" - ''; - - outputs = [ "out" "dev" ]; - - patches = [ - ./gnu-install-dirs.patch - ] ++ lib.optionals stdenv.hostPlatform.isMusl [ - ../../libcxx-0001-musl-hacks.patch - ]; - - # Prevent errors like "error: 'foo' is unavailable: introduced in macOS yy.zz" - postPatch = '' - substituteInPlace include/__config \ - --replace "# define _LIBCPP_USE_AVAILABILITY_APPLE" "" - ''; - - preConfigure = '' - # Get headers from the cxxabi source so we can see private headers not installed by the cxxabi package - cmakeFlagsArray=($cmakeFlagsArray -DLIBCXX_CXX_ABI_INCLUDE_PATHS="$LIBCXXABI_INCLUDE_DIR") - '' + lib.optionalString stdenv.hostPlatform.isMusl '' - patchShebangs utils/cat_files.py - ''; - nativeBuildInputs = [ cmake ] - ++ lib.optional (stdenv.hostPlatform.isMusl || stdenv.hostPlatform.isWasi) python3 - ++ lib.optional stdenv.hostPlatform.isDarwin fixDarwinDylibNames; - - buildInputs = [ cxxabi ]; - - cmakeFlags = [ - "-DLIBCXX_LIBCPPABI_VERSION=2" - "-DLIBCXX_CXX_ABI=${cxxabi.pname}" - ] ++ lib.optional (stdenv.hostPlatform.isMusl || stdenv.hostPlatform.isWasi) "-DLIBCXX_HAS_MUSL_LIBC=1" - ++ lib.optional (cxxabi.pname == "libcxxabi") "-DLIBCXX_LIBCXXABI_LIB_PATH=${cxxabi}/lib" - ++ lib.optional (stdenv.hostPlatform.useLLVM or false) "-DLIBCXX_USE_COMPILER_RT=ON" - ++ lib.optionals stdenv.hostPlatform.isWasm [ - "-DLIBCXX_ENABLE_THREADS=OFF" - "-DLIBCXX_ENABLE_FILESYSTEM=OFF" - "-DLIBCXX_ENABLE_EXCEPTIONS=OFF" - ] ++ lib.optional (!enableShared) "-DLIBCXX_ENABLE_SHARED=OFF"; - - preInstall = lib.optionalString (stdenv.isDarwin) '' - for file in lib/*.dylib; do - if [ -L "$file" ]; then continue; fi - - baseName=$(basename $(${stdenv.cc.targetPrefix}otool -D $file | tail -n 1)) - installName="$out/lib/$baseName" - abiName=$(echo "$baseName" | sed -e 's/libc++/libc++abi/') - - for other in $(${stdenv.cc.targetPrefix}otool -L $file | awk '$1 ~ "/libc\\+\\+abi" { print $1 }'); do - ${stdenv.cc.targetPrefix}install_name_tool -change $other ${cxxabi}/lib/$abiName $file - done - done - ''; - - passthru = { - isLLVM = true; - inherit cxxabi; - }; - - meta = llvm_meta // { - homepage = "https://libcxx.llvm.org/"; - description = "C++ standard library"; - longDescription = '' - libc++ is an implementation of the C++ standard library, targeting C++11, - C++14 and above. - ''; - # "All of the code in libc++ is dual licensed under the MIT license and the - # UIUC License (a BSD-like license)": - license = with lib.licenses; [ mit ncsa ]; - }; -} diff --git a/pkgs/development/compilers/llvm/10/libcxx/gnu-install-dirs.patch b/pkgs/development/compilers/llvm/10/libcxx/gnu-install-dirs.patch deleted file mode 100644 index 4b031e90bdd55..0000000000000 --- a/pkgs/development/compilers/llvm/10/libcxx/gnu-install-dirs.patch +++ /dev/null @@ -1,99 +0,0 @@ -diff --git a/CMakeLists.txt b/CMakeLists.txt -index 60564dc96c7b..77d832ad5a44 100644 ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -26,6 +26,8 @@ set(CMAKE_MODULE_PATH - if (CMAKE_SOURCE_DIR STREQUAL CMAKE_CURRENT_SOURCE_DIR OR LIBCXX_STANDALONE_BUILD) - project(libcxx CXX C) - -+ include(GNUInstallDirs) -+ - set(PACKAGE_NAME libcxx) - set(PACKAGE_VERSION 10.0.1) - set(PACKAGE_STRING "${PACKAGE_NAME} ${PACKAGE_VERSION}") -@@ -415,7 +417,7 @@ string(REGEX MATCH "[0-9]+\\.[0-9]+(\\.[0-9]+)?" CLANG_VERSION - if(LLVM_ENABLE_PER_TARGET_RUNTIME_DIR AND NOT APPLE) - set(LIBCXX_LIBRARY_DIR ${LLVM_LIBRARY_OUTPUT_INTDIR}/${LLVM_DEFAULT_TARGET_TRIPLE}/c++) - set(LIBCXX_HEADER_DIR ${LLVM_BINARY_DIR}) -- set(LIBCXX_INSTALL_LIBRARY_DIR lib${LLVM_LIBDIR_SUFFIX}/${LLVM_DEFAULT_TARGET_TRIPLE}/c++) -+ set(LIBCXX_INSTALL_LIBRARY_DIR ${CMAKE_INSTALL_LIBDIR}${LLVM_LIBDIR_SUFFIX}/${LLVM_DEFAULT_TARGET_TRIPLE}/c++) - if(LIBCXX_LIBDIR_SUBDIR) - string(APPEND LIBCXX_LIBRARY_DIR /${LIBCXX_LIBDIR_SUBDIR}) - string(APPEND LIBCXX_INSTALL_LIBRARY_DIR /${LIBCXX_LIBDIR_SUBDIR}) -@@ -423,10 +425,10 @@ if(LLVM_ENABLE_PER_TARGET_RUNTIME_DIR AND NOT APPLE) - elseif(LLVM_LIBRARY_OUTPUT_INTDIR) - set(LIBCXX_LIBRARY_DIR ${LLVM_LIBRARY_OUTPUT_INTDIR}) - set(LIBCXX_HEADER_DIR ${LLVM_BINARY_DIR}) -- set(LIBCXX_INSTALL_LIBRARY_DIR lib${LIBCXX_LIBDIR_SUFFIX}) -+ set(LIBCXX_INSTALL_LIBRARY_DIR ${CMAKE_INSTALL_LIBDIR}${LIBCXX_LIBDIR_SUFFIX}) - else() - set(LIBCXX_LIBRARY_DIR ${CMAKE_BINARY_DIR}/lib${LIBCXX_LIBDIR_SUFFIX}) -- set(LIBCXX_INSTALL_LIBRARY_DIR lib${LIBCXX_LIBDIR_SUFFIX}) -+ set(LIBCXX_INSTALL_LIBRARY_DIR ${CMAKE_INSTALL_LIBDIR}${LIBCXX_LIBDIR_SUFFIX}) - endif() - - file(MAKE_DIRECTORY "${LIBCXX_BINARY_INCLUDE_DIR}") -diff --git a/cmake/Modules/HandleLibCXXABI.cmake b/cmake/Modules/HandleLibCXXABI.cmake -index 10f100f7f0fb..95ed3978ab73 100644 ---- a/cmake/Modules/HandleLibCXXABI.cmake -+++ b/cmake/Modules/HandleLibCXXABI.cmake -@@ -61,7 +61,7 @@ macro(setup_abi_lib abidefines abishared abistatic abifiles abidirs) - - if (LIBCXX_INSTALL_HEADERS) - install(FILES "${LIBCXX_BINARY_INCLUDE_DIR}/${fpath}" -- DESTINATION ${LIBCXX_INSTALL_HEADER_PREFIX}include/c++/v1/${dstdir} -+ DESTINATION ${LIBCXX_INSTALL_HEADER_PREFIX}${CMAKE_INSTALL_INCLUDEDIR}/c++/v1/${dstdir} - COMPONENT cxx-headers - PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ - ) -diff --git a/include/CMakeLists.txt b/include/CMakeLists.txt -index 302da8a131b4..4c6ab463f564 100644 ---- a/include/CMakeLists.txt -+++ b/include/CMakeLists.txt -@@ -244,7 +244,7 @@ if (LIBCXX_INSTALL_HEADERS) - foreach(file ${files}) - get_filename_component(dir ${file} DIRECTORY) - install(FILES ${file} -- DESTINATION ${LIBCXX_INSTALL_HEADER_PREFIX}include/c++/v1/${dir} -+ DESTINATION ${LIBCXX_INSTALL_HEADER_PREFIX}${CMAKE_INSTALL_INCLUDEDIR}/c++/v1/${dir} - COMPONENT ${CXX_HEADER_TARGET} - PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ - ) -@@ -253,7 +253,7 @@ if (LIBCXX_INSTALL_HEADERS) - if (LIBCXX_NEEDS_SITE_CONFIG) - # Install the generated header as __config. - install(FILES ${LIBCXX_BINARY_DIR}/__generated_config -- DESTINATION ${LIBCXX_INSTALL_HEADER_PREFIX}include/c++/v1 -+ DESTINATION ${LIBCXX_INSTALL_HEADER_PREFIX}${CMAKE_INSTALL_INCLUDEDIR}/c++/v1 - PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ - RENAME __config - COMPONENT ${CXX_HEADER_TARGET}) -diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt -index 120505fe18da..9b8456d8405a 100644 ---- a/src/CMakeLists.txt -+++ b/src/CMakeLists.txt -@@ -341,21 +341,21 @@ if (LIBCXX_INSTALL_LIBRARY) - install(TARGETS cxx_shared - ARCHIVE DESTINATION ${LIBCXX_INSTALL_PREFIX}${LIBCXX_INSTALL_LIBRARY_DIR} COMPONENT cxx - LIBRARY DESTINATION ${LIBCXX_INSTALL_PREFIX}${LIBCXX_INSTALL_LIBRARY_DIR} COMPONENT cxx -- RUNTIME DESTINATION ${LIBCXX_INSTALL_PREFIX}bin COMPONENT cxx) -+ RUNTIME DESTINATION ${LIBCXX_INSTALL_PREFIX}${CMAKE_INSTALL_BINDIR} COMPONENT cxx) - endif() - - if (LIBCXX_INSTALL_STATIC_LIBRARY) - install(TARGETS cxx_static - ARCHIVE DESTINATION ${LIBCXX_INSTALL_PREFIX}${LIBCXX_INSTALL_LIBRARY_DIR} COMPONENT cxx - LIBRARY DESTINATION ${LIBCXX_INSTALL_PREFIX}${LIBCXX_INSTALL_LIBRARY_DIR} COMPONENT cxx -- RUNTIME DESTINATION ${LIBCXX_INSTALL_PREFIX}bin COMPONENT cxx) -+ RUNTIME DESTINATION ${LIBCXX_INSTALL_PREFIX}${CMAKE_INSTALL_BINDIR} COMPONENT cxx) - endif() - - if(LIBCXX_INSTALL_EXPERIMENTAL_LIBRARY) - install(TARGETS ${LIBCXX_INSTALL_TARGETS} ${experimental_lib} - LIBRARY DESTINATION ${LIBCXX_INSTALL_PREFIX}${LIBCXX_INSTALL_LIBRARY_DIR} COMPONENT cxx - ARCHIVE DESTINATION ${LIBCXX_INSTALL_PREFIX}${LIBCXX_INSTALL_LIBRARY_DIR} COMPONENT cxx -- RUNTIME DESTINATION ${LIBCXX_INSTALL_PREFIX}bin COMPONENT cxx) -+ RUNTIME DESTINATION ${LIBCXX_INSTALL_PREFIX}${CMAKE_INSTALL_BINDIR} COMPONENT cxx) - endif() - - # NOTE: This install command must go after the cxx install command otherwise diff --git a/pkgs/development/compilers/llvm/10/libcxxabi/default.nix b/pkgs/development/compilers/llvm/10/libcxxabi/default.nix deleted file mode 100644 index c4eba56a6b81c..0000000000000 --- a/pkgs/development/compilers/llvm/10/libcxxabi/default.nix +++ /dev/null @@ -1,85 +0,0 @@ -{ lib, stdenv, llvm_meta, cmake, fetch, libcxx, libunwind, llvm, version -, enableShared ? !stdenv.hostPlatform.isStatic -}: - -stdenv.mkDerivation { - pname = "libcxxabi"; - inherit version; - - src = fetch "libcxxabi" "0yqs722y76cwvmfsq0lb917r9m3fci7bf5z3yzl71yz9n88ghzm9"; - - outputs = [ "out" "dev" ]; - - postUnpack = '' - unpackFile ${libcxx.src} - unpackFile ${llvm.src} - cmakeFlags+=" -DLLVM_PATH=$PWD/$(ls -d llvm-*) -DLIBCXXABI_LIBCXX_PATH=$PWD/$(ls -d libcxx-*)" - '' + lib.optionalString stdenv.isDarwin '' - export TRIPLE=x86_64-apple-darwin - '' + lib.optionalString stdenv.hostPlatform.isMusl '' - patch -p1 -d $(ls -d libcxx-*) -i ${../../libcxx-0001-musl-hacks.patch} - '' + lib.optionalString stdenv.hostPlatform.isWasm '' - patch -p1 -d $(ls -d llvm-*) -i ${../../common/libcxxabi/wasm.patch} - ''; - - patches = [ - ../../common/libcxxabi/no-threads.patch - ./gnu-install-dirs.patch - ]; - - nativeBuildInputs = [ cmake ]; - buildInputs = lib.optional (!stdenv.isDarwin && !stdenv.hostPlatform.isWasm) libunwind; - - cmakeFlags = lib.optionals (stdenv.hostPlatform.useLLVM or false) [ - "-DLLVM_ENABLE_LIBCXX=ON" - "-DLIBCXXABI_USE_LLVM_UNWINDER=ON" - ] ++ lib.optionals stdenv.hostPlatform.isWasm [ - "-DLIBCXXABI_ENABLE_THREADS=OFF" - "-DLIBCXXABI_ENABLE_EXCEPTIONS=OFF" - ] ++ lib.optionals (!enableShared) [ - "-DLIBCXXABI_ENABLE_SHARED=OFF" - ]; - - preInstall = lib.optionalString stdenv.isDarwin '' - for file in lib/*.dylib; do - if [ -L "$file" ]; then continue; fi - - # Fix up the install name. Preserve the basename, just replace the path. - installName="$out/lib/$(basename $(${stdenv.cc.targetPrefix}otool -D $file | tail -n 1))" - - # this should be done in CMake, but having trouble figuring out - # the magic combination of necessary CMake variables - # if you fancy a try, take a look at - # https://gitlab.kitware.com/cmake/community/-/wikis/doc/cmake/RPATH-handling - ${stdenv.cc.targetPrefix}install_name_tool -id $installName $file - - # cc-wrapper passes '-lc++abi' to all c++ link steps, but that causes - # libcxxabi to sometimes link against a different version of itself. - # Here we simply make that second reference point to ourselves. - for other in $(${stdenv.cc.targetPrefix}otool -L $file | awk '$1 ~ "/libc\\+\\+abi" { print $1 }'); do - ${stdenv.cc.targetPrefix}install_name_tool -change $other $installName $file - done - done - ''; - - postInstall = '' - mkdir -p "$dev/include" - install -m 644 ../include/${if stdenv.isDarwin then "*" else "cxxabi.h"} "$dev/include" - ''; - - passthru = { - libName = "c++abi"; - }; - - meta = llvm_meta // { - homepage = "https://libcxxabi.llvm.org/"; - description = "Provides C++ standard library support"; - longDescription = '' - libc++abi is a new implementation of low level support for a standard C++ library. - ''; - # "All of the code in libc++abi is dual licensed under the MIT license and - # the UIUC License (a BSD-like license)": - license = with lib.licenses; [ mit ncsa ]; - maintainers = llvm_meta.maintainers ++ [ lib.maintainers.vlstill ]; - }; -} diff --git a/pkgs/development/compilers/llvm/10/libcxxabi/gnu-install-dirs.patch b/pkgs/development/compilers/llvm/10/libcxxabi/gnu-install-dirs.patch deleted file mode 100644 index 0f80ade7c389d..0000000000000 --- a/pkgs/development/compilers/llvm/10/libcxxabi/gnu-install-dirs.patch +++ /dev/null @@ -1,34 +0,0 @@ -diff --git a/CMakeLists.txt b/CMakeLists.txt -index 8f9572586b4a..bf0e41dfc751 100644 ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -20,6 +20,8 @@ set(CMAKE_MODULE_PATH - if (CMAKE_SOURCE_DIR STREQUAL CMAKE_CURRENT_SOURCE_DIR OR LIBCXXABI_STANDALONE_BUILD) - project(libcxxabi CXX C) - -+ include(GNUInstallDirs) -+ - set(PACKAGE_NAME libcxxabi) - set(PACKAGE_VERSION 10.0.1) - set(PACKAGE_STRING "${PACKAGE_NAME} ${PACKAGE_VERSION}") -@@ -214,17 +216,17 @@ string(REGEX MATCH "[0-9]+\\.[0-9]+(\\.[0-9]+)?" CLANG_VERSION - - if(LLVM_ENABLE_PER_TARGET_RUNTIME_DIR AND NOT APPLE) - set(LIBCXXABI_LIBRARY_DIR ${LLVM_LIBRARY_OUTPUT_INTDIR}/${LLVM_DEFAULT_TARGET_TRIPLE}/c++) -- set(LIBCXXABI_INSTALL_LIBRARY_DIR lib${LLVM_LIBDIR_SUFFIX}/${LLVM_DEFAULT_TARGET_TRIPLE}/c++) -+ set(LIBCXXABI_INSTALL_LIBRARY_DIR ${CMAKE_INSTALL_LIBDIR}${LLVM_LIBDIR_SUFFIX}/${LLVM_DEFAULT_TARGET_TRIPLE}/c++) - if(LIBCXX_LIBDIR_SUBDIR) - string(APPEND LIBCXXABI_LIBRARY_DIR /${LIBCXXABI_LIBDIR_SUBDIR}) - string(APPEND LIBCXXABI_INSTALL_LIBRARY_DIR /${LIBCXXABI_LIBDIR_SUBDIR}) - endif() - elseif(LLVM_LIBRARY_OUTPUT_INTDIR) - set(LIBCXXABI_LIBRARY_DIR ${LLVM_LIBRARY_OUTPUT_INTDIR}) -- set(LIBCXXABI_INSTALL_LIBRARY_DIR lib${LIBCXXABI_LIBDIR_SUFFIX}) -+ set(LIBCXXABI_INSTALL_LIBRARY_DIR ${CMAKE_INSTALL_LIBDIR}${LIBCXXABI_LIBDIR_SUFFIX}) - else() - set(LIBCXXABI_LIBRARY_DIR ${CMAKE_BINARY_DIR}/lib${LIBCXXABI_LIBDIR_SUFFIX}) -- set(LIBCXXABI_INSTALL_LIBRARY_DIR lib${LIBCXXABI_LIBDIR_SUFFIX}) -+ set(LIBCXXABI_INSTALL_LIBRARY_DIR ${CMAKE_INSTALL_LIBDIR}${LIBCXXABI_LIBDIR_SUFFIX}) - endif() - - set(LIBCXXABI_INSTALL_PREFIX "" CACHE STRING "Define libc++abi destination prefix.") diff --git a/pkgs/development/compilers/llvm/10/libunwind/default.nix b/pkgs/development/compilers/llvm/10/libunwind/default.nix deleted file mode 100644 index 2941dca35bf6e..0000000000000 --- a/pkgs/development/compilers/llvm/10/libunwind/default.nix +++ /dev/null @@ -1,31 +0,0 @@ -{ lib, stdenv, llvm_meta, version, fetch, cmake, enableShared ? !stdenv.hostPlatform.isStatic -}: - -stdenv.mkDerivation rec { - pname = "libunwind"; - inherit version; - - src = fetch pname "09syx66idnm2pr46x2vmk0jn3iwdv0lkd04xy4zjbwmz3vn066bl"; - - patches = [ - ./gnu-install-dirs.patch - ]; - - outputs = [ "out" "dev" ]; - - nativeBuildInputs = [ cmake ]; - - cmakeFlags = lib.optional (!enableShared) "-DLIBUNWIND_ENABLE_SHARED=OFF"; - - meta = llvm_meta // { - # Details: https://github.com/llvm/llvm-project/blob/main/libunwind/docs/index.rst - homepage = "https://clang.llvm.org/docs/Toolchain.html#unwind-library"; - description = "LLVM's unwinder library"; - longDescription = '' - The unwind library provides a family of _Unwind_* functions implementing - the language-neutral stack unwinding portion of the Itanium C++ ABI (Level - I). It is a dependency of the C++ ABI library, and sometimes is a - dependency of other runtimes. - ''; - }; -} diff --git a/pkgs/development/compilers/llvm/10/libunwind/gnu-install-dirs.patch b/pkgs/development/compilers/llvm/10/libunwind/gnu-install-dirs.patch deleted file mode 100644 index 8cea7d3e33419..0000000000000 --- a/pkgs/development/compilers/llvm/10/libunwind/gnu-install-dirs.patch +++ /dev/null @@ -1,34 +0,0 @@ -diff --git a/CMakeLists.txt b/CMakeLists.txt -index c033069ef1d0..e2846896eece 100644 ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -18,6 +18,8 @@ set(CMAKE_MODULE_PATH - if (CMAKE_SOURCE_DIR STREQUAL CMAKE_CURRENT_SOURCE_DIR OR LIBUNWIND_STANDALONE_BUILD) - project(libunwind) - -+ include(GNUInstallDirs) -+ - # Rely on llvm-config. - set(CONFIG_OUTPUT) - if(NOT LLVM_CONFIG_PATH) -@@ -189,17 +191,17 @@ string(REGEX MATCH "[0-9]+\\.[0-9]+(\\.[0-9]+)?" CLANG_VERSION - - if(LLVM_ENABLE_PER_TARGET_RUNTIME_DIR AND NOT APPLE) - set(LIBUNWIND_LIBRARY_DIR ${LLVM_LIBRARY_OUTPUT_INTDIR}/${LLVM_DEFAULT_TARGET_TRIPLE}/c++) -- set(LIBUNWIND_INSTALL_LIBRARY_DIR lib${LLVM_LIBDIR_SUFFIX}/${LLVM_DEFAULT_TARGET_TRIPLE}/c++) -+ set(LIBUNWIND_INSTALL_LIBRARY_DIR ${CMAKE_INSTALL_LIBDIR}${LLVM_LIBDIR_SUFFIX}/${LLVM_DEFAULT_TARGET_TRIPLE}/c++) - if(LIBCXX_LIBDIR_SUBDIR) - string(APPEND LIBUNWIND_LIBRARY_DIR /${LIBUNWIND_LIBDIR_SUBDIR}) - string(APPEND LIBUNWIND_INSTALL_LIBRARY_DIR /${LIBUNWIND_LIBDIR_SUBDIR}) - endif() - elseif(LLVM_LIBRARY_OUTPUT_INTDIR) - set(LIBUNWIND_LIBRARY_DIR ${LLVM_LIBRARY_OUTPUT_INTDIR}) -- set(LIBUNWIND_INSTALL_LIBRARY_DIR lib${LIBUNWIND_LIBDIR_SUFFIX}) -+ set(LIBUNWIND_INSTALL_LIBRARY_DIR ${CMAKE_INSTALL_LIBDIR}${LIBUNWIND_LIBDIR_SUFFIX}) - else() - set(LIBUNWIND_LIBRARY_DIR ${CMAKE_BINARY_DIR}/lib${LIBUNWIND_LIBDIR_SUFFIX}) -- set(LIBUNWIND_INSTALL_LIBRARY_DIR lib${LIBUNWIND_LIBDIR_SUFFIX}) -+ set(LIBUNWIND_INSTALL_LIBRARY_DIR ${CMAKE_INSTALL_LIBDIR}${LIBUNWIND_LIBDIR_SUFFIX}) - endif() - - set(CMAKE_ARCHIVE_OUTPUT_DIRECTORY ${LIBUNWIND_LIBRARY_DIR}) diff --git a/pkgs/development/compilers/llvm/10/lld/default.nix b/pkgs/development/compilers/llvm/10/lld/default.nix deleted file mode 100644 index d4c686a0f4db6..0000000000000 --- a/pkgs/development/compilers/llvm/10/lld/default.nix +++ /dev/null @@ -1,46 +0,0 @@ -{ lib, stdenv, llvm_meta -, buildLlvmTools -, fetch -, cmake -, libxml2 -, libllvm -, version -}: - -stdenv.mkDerivation rec { - pname = "lld"; - inherit version; - - src = fetch pname "0ynzi35r4fckvp6842alpd43qr810j3728yfslc66fk2mbh4j52r"; - - patches = [ - ./gnu-install-dirs.patch - ]; - - nativeBuildInputs = [ cmake ]; - buildInputs = [ libllvm libxml2 ]; - - cmakeFlags = [ - "-DLLVM_CONFIG_PATH=${libllvm.dev}/bin/llvm-config${lib.optionalString (stdenv.hostPlatform != stdenv.buildPlatform) "-native"}" - ] ++ lib.optionals (stdenv.hostPlatform != stdenv.buildPlatform) [ - "-DLLVM_TABLEGEN_EXE=${buildLlvmTools.llvm}/bin/llvm-tblgen" - ]; - - # Musl's default stack size is too small for lld to be able to link Firefox. - LDFLAGS = lib.optionalString stdenv.hostPlatform.isMusl "-Wl,-z,stack-size=2097152"; - - outputs = [ "out" "lib" "dev" ]; - - meta = llvm_meta // { - homepage = "https://lld.llvm.org/"; - description = "The LLVM linker (unwrapped)"; - longDescription = '' - LLD is a linker from the LLVM project that is a drop-in replacement for - system linkers and runs much faster than them. It also provides features - that are useful for toolchain developers. - The linker supports ELF (Unix), PE/COFF (Windows), Mach-O (macOS), and - WebAssembly in descending order of completeness. Internally, LLD consists - of several different linkers. - ''; - }; -} diff --git a/pkgs/development/compilers/llvm/10/lld/gnu-install-dirs.patch b/pkgs/development/compilers/llvm/10/lld/gnu-install-dirs.patch deleted file mode 100644 index 232f5cbac9ddb..0000000000000 --- a/pkgs/development/compilers/llvm/10/lld/gnu-install-dirs.patch +++ /dev/null @@ -1,68 +0,0 @@ -diff --git a/CMakeLists.txt b/CMakeLists.txt -index 641f71c114ae..9d44c1463aff 100644 ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -6,6 +6,8 @@ if(CMAKE_SOURCE_DIR STREQUAL CMAKE_CURRENT_SOURCE_DIR) - set(CMAKE_INCLUDE_CURRENT_DIR ON) - set(LLD_BUILT_STANDALONE TRUE) - -+ include(GNUInstallDirs) -+ - find_program(LLVM_CONFIG_PATH "llvm-config" DOC "Path to llvm-config binary") - if(NOT LLVM_CONFIG_PATH) - message(FATAL_ERROR "llvm-config not found: specify LLVM_CONFIG_PATH") -@@ -202,7 +204,7 @@ include_directories(BEFORE - - if (NOT LLVM_INSTALL_TOOLCHAIN_ONLY) - install(DIRECTORY include/ -- DESTINATION include -+ DESTINATION ${CMAKE_INSTALL_INCLUDEDIR} - FILES_MATCHING - PATTERN "*.h" - PATTERN ".svn" EXCLUDE -diff --git a/cmake/modules/AddLLD.cmake b/cmake/modules/AddLLD.cmake -index fa48b428d26b..e7967aad3ceb 100644 ---- a/cmake/modules/AddLLD.cmake -+++ b/cmake/modules/AddLLD.cmake -@@ -20,9 +20,9 @@ macro(add_lld_library name) - install(TARGETS ${name} - COMPONENT ${name} - ${export_to_lldtargets} -- LIBRARY DESTINATION lib${LLVM_LIBDIR_SUFFIX} -- ARCHIVE DESTINATION lib${LLVM_LIBDIR_SUFFIX} -- RUNTIME DESTINATION bin) -+ LIBRARY DESTINATION ${CMAKE_INSTALL_LIBDIR}${LLVM_LIBDIR_SUFFIX} -+ ARCHIVE DESTINATION ${CMAKE_INSTALL_LIBDIR}${LLVM_LIBDIR_SUFFIX} -+ RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) - - if (${ARG_SHARED} AND NOT CMAKE_CONFIGURATION_TYPES) - add_llvm_install_targets(install-${name} -@@ -54,7 +54,7 @@ macro(add_lld_tool name) - - install(TARGETS ${name} - ${export_to_lldtargets} -- RUNTIME DESTINATION bin -+ RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR} - COMPONENT ${name}) - - if(NOT CMAKE_CONFIGURATION_TYPES) -@@ -69,5 +69,5 @@ endmacro() - macro(add_lld_symlink name dest) - add_llvm_tool_symlink(${name} ${dest} ALWAYS_GENERATE) - # Always generate install targets -- llvm_install_symlink(${name} ${dest} ALWAYS_GENERATE) -+ llvm_install_symlink(${name} ${dest} ${CMAKE_INSTALL_FULL_BINDIR} ALWAYS_GENERATE) - endmacro() -diff --git a/tools/lld/CMakeLists.txt b/tools/lld/CMakeLists.txt -index a15e296e31df..654c2cfdb9c0 100644 ---- a/tools/lld/CMakeLists.txt -+++ b/tools/lld/CMakeLists.txt -@@ -17,7 +17,7 @@ target_link_libraries(lld - ) - - install(TARGETS lld -- RUNTIME DESTINATION bin) -+ RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) - - if(NOT LLD_SYMLINKS_TO_CREATE) - set(LLD_SYMLINKS_TO_CREATE lld-link ld.lld ld64.lld wasm-ld) diff --git a/pkgs/development/compilers/llvm/10/lldb/gnu-install-dirs.patch b/pkgs/development/compilers/llvm/10/lldb/gnu-install-dirs.patch deleted file mode 100644 index 0a7539db5e6b7..0000000000000 --- a/pkgs/development/compilers/llvm/10/lldb/gnu-install-dirs.patch +++ /dev/null @@ -1,91 +0,0 @@ -diff --git a/CMakeLists.txt b/CMakeLists.txt -index 573b8556989e..a12cc6f6ba77 100644 ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -17,6 +17,8 @@ set(CMAKE_MODULE_PATH - # If we are not building as part of LLVM, build LLDB as a standalone project, - # using LLVM as an external library. - if (CMAKE_SOURCE_DIR STREQUAL CMAKE_CURRENT_SOURCE_DIR) -+ include(GNUInstallDirs) -+ - project(lldb) - include(LLDBStandalone) - -diff --git a/cmake/modules/AddLLDB.cmake b/cmake/modules/AddLLDB.cmake -index ecf0b66a41a3..6f2d97af7a11 100644 ---- a/cmake/modules/AddLLDB.cmake -+++ b/cmake/modules/AddLLDB.cmake -@@ -107,13 +107,13 @@ function(add_lldb_library name) - endif() - - if(PARAM_SHARED) -- set(install_dest lib${LLVM_LIBDIR_SUFFIX}) -+ set(install_dest ${CMAKE_INSTALL_LIBDIR}${LLVM_LIBDIR_SUFFIX}) - if(PARAM_INSTALL_PREFIX) - set(install_dest ${PARAM_INSTALL_PREFIX}) - endif() - # RUNTIME is relevant for DLL platforms, FRAMEWORK for macOS - install(TARGETS ${name} COMPONENT ${name} -- RUNTIME DESTINATION bin -+ RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR} - LIBRARY DESTINATION ${install_dest} - ARCHIVE DESTINATION ${install_dest} - FRAMEWORK DESTINATION ${install_dest}) -diff --git a/cmake/modules/LLDBConfig.cmake b/cmake/modules/LLDBConfig.cmake -index 4a15a343ee1d..c74bbb6878d7 100644 ---- a/cmake/modules/LLDBConfig.cmake -+++ b/cmake/modules/LLDBConfig.cmake -@@ -238,7 +238,7 @@ include_directories(BEFORE - if (NOT LLVM_INSTALL_TOOLCHAIN_ONLY) - install(DIRECTORY include/ - COMPONENT lldb-headers -- DESTINATION include -+ DESTINATION ${CMAKE_INSTALL_INCLUDEDIR} - FILES_MATCHING - PATTERN "*.h" - PATTERN ".svn" EXCLUDE -@@ -247,7 +247,7 @@ if (NOT LLVM_INSTALL_TOOLCHAIN_ONLY) - - install(DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/include/ - COMPONENT lldb-headers -- DESTINATION include -+ DESTINATION ${CMAKE_INSTALL_INCLUDEDIR} - FILES_MATCHING - PATTERN "*.h" - PATTERN ".svn" EXCLUDE -diff --git a/tools/intel-features/CMakeLists.txt b/tools/intel-features/CMakeLists.txt -index aff75d7db334..98a527c5e761 100644 ---- a/tools/intel-features/CMakeLists.txt -+++ b/tools/intel-features/CMakeLists.txt -@@ -64,4 +64,4 @@ if (LLDB_ENABLE_PYTHON AND LLDB_BUILD_INTEL_PT) - endif() - - install(TARGETS lldbIntelFeatures -- LIBRARY DESTINATION lib${LLVM_LIBDIR_SUFFIX}) -+ LIBRARY DESTINATION ${CMAKE_INSTALL_LIBDIR}${LLVM_LIBDIR_SUFFIX}) -diff --git a/cmake/modules/LLDBStandalone.cmake b/cmake/modules/LLDBStandalone.cmake -index 752113b..010f187 100644 ---- a/cmake/modules/LLDBStandalone.cmake -+++ b/cmake/modules/LLDBStandalone.cmake -@@ -62,7 +62,7 @@ endif() - - # They are used as destination of target generators. - set(LLVM_RUNTIME_OUTPUT_INTDIR ${CMAKE_BINARY_DIR}/${CMAKE_CFG_INTDIR}/bin) --set(LLVM_LIBRARY_OUTPUT_INTDIR ${CMAKE_BINARY_DIR}/${CMAKE_CFG_INTDIR}/lib${LLVM_LIBDIR_SUFFIX}) -+set(LLVM_LIBRARY_OUTPUT_INTDIR ${CMAKE_INSTALL_LIBDIR}${LLVM_LIBDIR_SUFFIX}) - if(WIN32 OR CYGWIN) - # DLL platform -- put DLLs into bin. - set(LLVM_SHLIB_OUTPUT_INTDIR ${LLVM_RUNTIME_OUTPUT_INTDIR}) -diff --git a/CMakeLists.txt b/CMakeLists.txt -index bf74802..1c98cae 100644 ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -222,7 +222,7 @@ if (LLDB_ENABLE_PYTHON) - if(LLDB_BUILD_FRAMEWORK) - set(LLDB_PYTHON_INSTALL_PATH ${LLDB_FRAMEWORK_INSTALL_DIR}/LLDB.framework/Resources/Python) - else() -- set(LLDB_PYTHON_INSTALL_PATH ${LLDB_PYTHON_RELATIVE_PATH}) -+ set(LLDB_PYTHON_INSTALL_PATH ${CMAKE_INSTALL_LIBDIR}/../${LLDB_PYTHON_RELATIVE_PATH}) - endif() - if (NOT CMAKE_CFG_INTDIR STREQUAL ".") - string(REPLACE ${CMAKE_CFG_INTDIR} "\$\{CMAKE_INSTALL_CONFIG_NAME\}" LLDB_PYTHON_INSTALL_PATH ${LLDB_PYTHON_INSTALL_PATH}) diff --git a/pkgs/development/compilers/llvm/10/lldb/procfs.patch b/pkgs/development/compilers/llvm/10/lldb/procfs.patch deleted file mode 100644 index b075dbaeee0ad..0000000000000 --- a/pkgs/development/compilers/llvm/10/lldb/procfs.patch +++ /dev/null @@ -1,31 +0,0 @@ ---- a/source/Plugins/Process/Linux/Procfs.h -+++ b/source/Plugins/Process/Linux/Procfs.h -@@ -11,21 +11,12 @@ - // sys/procfs.h on Android/Linux for all supported architectures. - - #include <sys/ptrace.h> -+#include <asm/ptrace.h> - --#ifdef __ANDROID__ --#if defined(__arm64__) || defined(__aarch64__) --typedef unsigned long elf_greg_t; --typedef elf_greg_t -- elf_gregset_t[(sizeof(struct user_pt_regs) / sizeof(elf_greg_t))]; --typedef struct user_fpsimd_state elf_fpregset_t; --#ifndef NT_FPREGSET --#define NT_FPREGSET NT_PRFPREG --#endif // NT_FPREGSET --#elif defined(__mips__) --#ifndef NT_FPREGSET --#define NT_FPREGSET NT_PRFPREG --#endif // NT_FPREGSET --#endif --#else // __ANDROID__ -+#if !defined(__GLIBC__) && defined(__powerpc__) -+#define pt_regs musl_pt_regs -+#include <sys/procfs.h> -+#undef pt_regs -+#else - #include <sys/procfs.h> --#endif // __ANDROID__ -+#endif diff --git a/pkgs/development/compilers/llvm/10/llvm/default.nix b/pkgs/development/compilers/llvm/10/llvm/default.nix deleted file mode 100644 index c09ec676e9ea7..0000000000000 --- a/pkgs/development/compilers/llvm/10/llvm/default.nix +++ /dev/null @@ -1,355 +0,0 @@ -{ lib, stdenv, llvm_meta -, pkgsBuildBuild -, fetch -, fetchpatch -, cmake -, python3 -, libffi -, enableGoldPlugin ? libbfd.hasPluginAPI -, libbfd -, libpfm -, libxml2 -, ncurses -, version -, release_version -, zlib -, buildLlvmTools -, debugVersion ? false -, doCheck ? stdenv.isLinux && (!stdenv.isx86_32) - && (stdenv.hostPlatform == stdenv.buildPlatform) -, enableManpages ? false -, enableSharedLibraries ? !stdenv.hostPlatform.isStatic -# broken for Ampere eMAG 8180 (c2.large.arm on Packet) #56245 -# broken for the armv7l builder -, enablePFM ? stdenv.isLinux && !stdenv.hostPlatform.isAarch -, enablePolly ? true -}: - -let - inherit (lib) optional optionals optionalString; - - # Used when creating a version-suffixed symlink of libLLVM.dylib - shortVersion = with lib; - concatStringsSep "." (take 1 (splitString "." release_version)); - - # Ordinarily we would just the `doCheck` and `checkDeps` functionality - # `mkDerivation` gives us to manage our test dependencies (instead of breaking - # out `doCheck` as a package level attribute). - # - # Unfortunately `lit` does not forward `$PYTHONPATH` to children processes, in - # particular the children it uses to do feature detection. - # - # This means that python deps we add to `checkDeps` (which the python - # interpreter is made aware of via `$PYTHONPATH` – populated by the python - # setup hook) are not picked up by `lit` which causes it to skip tests. - # - # Adding `python3.withPackages (ps: [ ... ])` to `checkDeps` also doesn't work - # because this package is shadowed in `$PATH` by the regular `python3` - # package. - # - # So, we "manually" assemble one python derivation for the package to depend - # on, taking into account whether checks are enabled or not: - python = if doCheck then - let - checkDeps = ps: with ps; [ psutil ]; - in python3.withPackages checkDeps - else python3; - -in stdenv.mkDerivation (rec { - pname = "llvm"; - inherit version; - - src = fetch pname "1wydhbp9kyjp5y0rc627imxgkgqiv3dfirbqil9dgpnbaw5y7n65"; - polly_src = fetch "polly" "0nm2d8niz47yjsa3r17v3p13b70igkd338ib8191znr1dfw0pyyj"; - - unpackPhase = '' - unpackFile $src - mv llvm-${version}* llvm - sourceRoot=$PWD/llvm - '' + optionalString enablePolly '' - unpackFile $polly_src - mv polly-* $sourceRoot/tools/polly - ''; - - outputs = [ "out" "lib" "dev" "python" ]; - - nativeBuildInputs = [ cmake python ] - ++ optionals enableManpages [ python3.pkgs.sphinx python3.pkgs.recommonmark ]; - - buildInputs = [ libxml2 libffi ] - ++ optional enablePFM libpfm; # exegesis - - propagatedBuildInputs = [ ncurses zlib ]; - - patches = [ - # When cross-compiling we configure llvm-config-native with an approximation - # of the flags used for the normal LLVM build. To avoid the need for building - # a native libLLVM.so (which would fail) we force llvm-config to be linked - # statically against the necessary LLVM components always. - ../../llvm-config-link-static.patch - - ./gnu-install-dirs.patch - # On older CPUs (e.g. Hydra/wendy) we'd be getting an error in this test. - (fetchpatch { - name = "uops-CMOV16rm-noreg.diff"; - url = "https://github.com/llvm/llvm-project/commit/9e9f991ac033.diff"; - sha256 = "sha256:12s8vr6ibri8b48h2z38f3afhwam10arfiqfy4yg37bmc054p5hi"; - stripLen = 1; - }) - - # Fix missing includes for GCC 11 - (fetchpatch { - name = "headers-gcc-11.patch"; - url = "https://github.com/llvm/llvm-project/commit/b498303066a63a203d24f739b2d2e0e56dca70d1.patch"; - sha256 = "0nh123kld0dgz2h941lng331dkj3wbm5lfxm375k1f569gv83hlk"; - stripLen = 1; - }) - - # Fix invalid std::string(nullptr) for GCC 12 - (fetchpatch { - name = "nvptx-gcc-12.patch"; - url = "https://github.com/llvm/llvm-project/commit/99e64623ec9b31def9375753491cc6093c831809.patch"; - sha256 = "0zjfjgavqzi2ypqwqnlvy6flyvdz8hi1anwv0ybwnm2zqixg7za3"; - stripLen = 1; - }) - (fetchpatch { - name = "dfaemitter-gcc-12.patch"; - url = "https://github.com/llvm/llvm-project/commit/0841916e87a39e3c223c986e8da31e4a9a1432e3.patch"; - sha256 = "1kckghvsngs51mqm82asy0s9vr19h8aqbw43a0w44mccqw6bzrwf"; - stripLen = 1; - }) - - # Fix musl build. - (fetchpatch { - url = "https://github.com/llvm/llvm-project/commit/5cd554303ead0f8891eee3cd6d25cb07f5a7bf67.patch"; - relative = "llvm"; - hash = "sha256-XPbvNJ45SzjMGlNUgt/IgEvM2dHQpDOe6woUJY+nUYA="; - }) - - # Backport gcc-13 fixes with missing includes. - (fetchpatch { - name = "signals-gcc-13.patch"; - url = "https://github.com/llvm/llvm-project/commit/ff1681ddb303223973653f7f5f3f3435b48a1983.patch"; - hash = "sha256-CXwYxQezTq5vdmc8Yn88BUAEly6YZ5VEIA6X3y5NNOs="; - stripLen = 1; - }) - ] ++ lib.optionals enablePolly [ - ./gnu-install-dirs-polly.patch - # Add missing isl header includess required to build LLVM 10 + Polly with clang 16. - (fetchpatch { - name = "polly-ppcg-isl-headers.patch"; - url = "https://repo.or.cz/ppcg.git/patch/098ba285306114dc71497f7b51c357f69c9b4472"; - hash = "sha256-c9L30rDROYAMbUSuaK9U/ixyFMlH/Sa1n+VgLODzSCQ="; - extraPrefix = "tools/polly/lib/External/ppcg/"; - stripLen = 1; - }) - ]; - - postPatch = optionalString stdenv.isDarwin '' - substituteInPlace cmake/modules/AddLLVM.cmake \ - --replace 'set(_install_name_dir INSTALL_NAME_DIR "@rpath")' "set(_install_name_dir)" \ - --replace 'set(_install_rpath "@loader_path/../''${CMAKE_INSTALL_LIBDIR}''${LLVM_LIBDIR_SUFFIX}" ''${extra_libdir})' "" - '' + '' - # FileSystem permissions tests fail with various special bits - substituteInPlace unittests/Support/CMakeLists.txt \ - --replace "Path.cpp" "" - rm unittests/Support/Path.cpp - '' + optionalString stdenv.hostPlatform.isMusl '' - patch -p1 -i ${../../TLI-musl.patch} - substituteInPlace unittests/Support/CMakeLists.txt \ - --replace "add_subdirectory(DynamicLibrary)" "" - rm unittests/Support/DynamicLibrary/DynamicLibraryTest.cpp - # valgrind unhappy with musl or glibc, but fails w/musl only - rm test/CodeGen/AArch64/wineh4.mir - '' + optionalString stdenv.hostPlatform.isAarch32 '' - # skip failing X86 test cases on 32-bit ARM - rm test/DebugInfo/X86/convert-debugloc.ll - rm test/DebugInfo/X86/convert-inlined.ll - rm test/DebugInfo/X86/convert-linked.ll - rm test/DebugInfo/X86/debug_addr.ll - rm test/tools/dsymutil/X86/op-convert.test - '' + optionalString (stdenv.hostPlatform.system == "armv6l-linux") '' - # Seems to require certain floating point hardware (NEON?) - rm test/ExecutionEngine/frem.ll - '' + '' - patchShebangs test/BugPoint/compile-custom.ll.py - '' + '' - # Tweak tests to ignore namespace part of type to support - # gcc-12: https://gcc.gnu.org/PR103598. - # The change below mangles strings like: - # CHECK-NEXT: Starting llvm::Function pass manager run. - # to: - # CHECK-NEXT: Starting {{.*}}Function pass manager run. - for f in \ - test/Other/new-pass-manager.ll \ - test/Other/new-pm-defaults.ll \ - test/Other/new-pm-lto-defaults.ll \ - test/Other/new-pm-thinlto-defaults.ll \ - test/Other/pass-pipeline-parsing.ll \ - test/Transforms/Inline/cgscc-incremental-invalidate.ll \ - test/Transforms/Inline/clear-analyses.ll \ - test/Transforms/LoopUnroll/unroll-loop-invalidation.ll \ - test/Transforms/SCCP/ipsccp-preserve-analysis.ll \ - test/Transforms/SCCP/preserve-analysis.ll \ - test/Transforms/SROA/dead-inst.ll \ - test/tools/gold/X86/new-pm.ll \ - ; do - echo "PATCH: $f" - substituteInPlace $f \ - --replace 'Starting llvm::' 'Starting {{.*}}' \ - --replace 'Finished llvm::' 'Finished {{.*}}' - done - ''; - - preConfigure = '' - # Workaround for configure flags that need to have spaces - cmakeFlagsArray+=( - -DLLVM_LIT_ARGS='-svj''${NIX_BUILD_CORES} --no-progress-bar' - ) - ''; - - # hacky fix: created binaries need to be run before installation - preBuild = '' - mkdir -p $out/ - ln -sv $PWD/lib $out - ''; - - cmakeBuildType = if debugVersion then "Debug" else "Release"; - - cmakeFlags = with stdenv; let - # These flags influence llvm-config's BuildVariables.inc in addition to the - # general build. We need to make sure these are also passed via - # CROSS_TOOLCHAIN_FLAGS_NATIVE when cross-compiling or llvm-config-native - # will return different results from the cross llvm-config. - # - # Some flags don't need to be repassed because LLVM already does so (like - # CMAKE_BUILD_TYPE), others are irrelevant to the result. - flagsForLlvmConfig = [ - "-DLLVM_INSTALL_CMAKE_DIR=${placeholder "dev"}/lib/cmake/llvm/" - "-DLLVM_ENABLE_RTTI=ON" - ] ++ optionals enableSharedLibraries [ - "-DLLVM_LINK_LLVM_DYLIB=ON" - ]; - in flagsForLlvmConfig ++ [ - "-DLLVM_INSTALL_UTILS=ON" # Needed by rustc - "-DLLVM_BUILD_TESTS=${if doCheck then "ON" else "OFF"}" - "-DLLVM_ENABLE_FFI=ON" - "-DLLVM_HOST_TRIPLE=${stdenv.hostPlatform.config}" - "-DLLVM_DEFAULT_TARGET_TRIPLE=${stdenv.hostPlatform.config}" - "-DLLVM_ENABLE_DUMP=ON" - ] ++ optionals enableManpages [ - "-DLLVM_BUILD_DOCS=ON" - "-DLLVM_ENABLE_SPHINX=ON" - "-DSPHINX_OUTPUT_MAN=ON" - "-DSPHINX_OUTPUT_HTML=OFF" - "-DSPHINX_WARNINGS_AS_ERRORS=OFF" - ] ++ optionals (enableGoldPlugin) [ - "-DLLVM_BINUTILS_INCDIR=${libbfd.dev}/include" - ] ++ optionals isDarwin [ - "-DLLVM_ENABLE_LIBCXX=ON" - "-DCAN_TARGET_i386=false" - ] ++ optionals (stdenv.hostPlatform != stdenv.buildPlatform) [ - "-DCMAKE_CROSSCOMPILING=True" - "-DLLVM_TABLEGEN=${buildLlvmTools.llvm}/bin/llvm-tblgen" - ( - let - nativeCC = pkgsBuildBuild.targetPackages.stdenv.cc; - nativeBintools = nativeCC.bintools.bintools; - nativeToolchainFlags = [ - "-DCMAKE_C_COMPILER=${nativeCC}/bin/${nativeCC.targetPrefix}cc" - "-DCMAKE_CXX_COMPILER=${nativeCC}/bin/${nativeCC.targetPrefix}c++" - "-DCMAKE_AR=${nativeBintools}/bin/${nativeBintools.targetPrefix}ar" - "-DCMAKE_STRIP=${nativeBintools}/bin/${nativeBintools.targetPrefix}strip" - "-DCMAKE_RANLIB=${nativeBintools}/bin/${nativeBintools.targetPrefix}ranlib" - ]; - # We need to repass the custom GNUInstallDirs values, otherwise CMake - # will choose them for us, leading to wrong results in llvm-config-native - nativeInstallFlags = [ - "-DCMAKE_INSTALL_PREFIX=${placeholder "out"}" - "-DCMAKE_INSTALL_BINDIR=${placeholder "out"}/bin" - "-DCMAKE_INSTALL_INCLUDEDIR=${placeholder "dev"}/include" - "-DCMAKE_INSTALL_LIBDIR=${placeholder "lib"}/lib" - "-DCMAKE_INSTALL_LIBEXECDIR=${placeholder "lib"}/libexec" - ]; - in "-DCROSS_TOOLCHAIN_FLAGS_NATIVE:list=" - + lib.concatStringsSep ";" (lib.concatLists [ - flagsForLlvmConfig - nativeToolchainFlags - nativeInstallFlags - ]) - ) - ]; - - postBuild = '' - rm -fR $out - ''; - - preCheck = '' - export LD_LIBRARY_PATH=$LD_LIBRARY_PATH''${LD_LIBRARY_PATH:+:}$PWD/lib - ''; - - postInstall = '' - mkdir -p $python/share - mv $out/share/opt-viewer $python/share/opt-viewer - moveToOutput "bin/llvm-config*" "$dev" - substituteInPlace "$dev/lib/cmake/llvm/LLVMExports-${if debugVersion then "debug" else "release"}.cmake" \ - --replace "\''${_IMPORT_PREFIX}/lib/lib" "$lib/lib/lib" \ - --replace "$out/bin/llvm-config" "$dev/bin/llvm-config" - substituteInPlace "$dev/lib/cmake/llvm/LLVMConfig.cmake" \ - --replace 'set(LLVM_BINARY_DIR "''${LLVM_INSTALL_PREFIX}")' 'set(LLVM_BINARY_DIR "''${LLVM_INSTALL_PREFIX}'"$lib"'")' - '' - + optionalString (stdenv.isDarwin && enableSharedLibraries) '' - ln -s $lib/lib/libLLVM.dylib $lib/lib/libLLVM-${shortVersion}.dylib - ln -s $lib/lib/libLLVM.dylib $lib/lib/libLLVM-${release_version}.dylib - '' - + optionalString (stdenv.buildPlatform != stdenv.hostPlatform) '' - cp NATIVE/bin/llvm-config $dev/bin/llvm-config-native - ''; - - inherit doCheck; - - checkTarget = "check-all"; - - requiredSystemFeatures = [ "big-parallel" ]; - meta = llvm_meta // { - homepage = "https://llvm.org/"; - description = "A collection of modular and reusable compiler and toolchain technologies"; - longDescription = '' - The LLVM Project is a collection of modular and reusable compiler and - toolchain technologies. Despite its name, LLVM has little to do with - traditional virtual machines. The name "LLVM" itself is not an acronym; it - is the full name of the project. - LLVM began as a research project at the University of Illinois, with the - goal of providing a modern, SSA-based compilation strategy capable of - supporting both static and dynamic compilation of arbitrary programming - languages. Since then, LLVM has grown to be an umbrella project consisting - of a number of subprojects, many of which are being used in production by - a wide variety of commercial and open source projects as well as being - widely used in academic research. Code in the LLVM project is licensed - under the "Apache 2.0 License with LLVM exceptions". - ''; - }; -} // lib.optionalAttrs enableManpages { - pname = "llvm-manpages"; - - buildPhase = '' - make docs-llvm-man - ''; - - propagatedBuildInputs = []; - - installPhase = '' - make -C docs install - ''; - - postPatch = null; - postInstall = null; - - outputs = [ "out" ]; - - doCheck = false; - - meta = llvm_meta // { - description = "man pages for LLVM ${version}"; - }; -}) diff --git a/pkgs/development/compilers/llvm/10/llvm/gnu-install-dirs-polly.patch b/pkgs/development/compilers/llvm/10/llvm/gnu-install-dirs-polly.patch deleted file mode 100644 index 3353058d8ab11..0000000000000 --- a/pkgs/development/compilers/llvm/10/llvm/gnu-install-dirs-polly.patch +++ /dev/null @@ -1,106 +0,0 @@ -diff --git a/tools/polly/CMakeLists.txt b/tools/polly/CMakeLists.txt -index 9939097f743e..8cc538da912a 100644 ---- a/tools/polly/CMakeLists.txt -+++ b/tools/polly/CMakeLists.txt -@@ -2,7 +2,11 @@ - if (NOT DEFINED LLVM_MAIN_SRC_DIR) - project(Polly) - cmake_minimum_required(VERSION 3.4.3) -+endif() -+ -+include(GNUInstallDirs) - -+if (NOT DEFINED LLVM_MAIN_SRC_DIR) - # Where is LLVM installed? - find_package(LLVM CONFIG REQUIRED) - set(CMAKE_MODULE_PATH ${CMAKE_MODULE_PATH} ${LLVM_CMAKE_DIR}) -@@ -145,14 +149,14 @@ include_directories( - - if (NOT LLVM_INSTALL_TOOLCHAIN_ONLY) - install(DIRECTORY include/ -- DESTINATION include -+ DESTINATION ${CMAKE_INSTALL_INCLUDEDIR} - FILES_MATCHING - PATTERN "*.h" - PATTERN ".svn" EXCLUDE - ) - - install(DIRECTORY ${POLLY_BINARY_DIR}/include/ -- DESTINATION include -+ DESTINATION ${CMAKE_INSTALL_INCLUDEDIR} - FILES_MATCHING - PATTERN "*.h" - PATTERN "CMakeFiles" EXCLUDE -diff --git a/tools/polly/cmake/CMakeLists.txt b/tools/polly/cmake/CMakeLists.txt -index 211f95512717..f9e04a4844b6 100644 ---- a/tools/polly/cmake/CMakeLists.txt -+++ b/tools/polly/cmake/CMakeLists.txt -@@ -79,18 +79,18 @@ file(GENERATE - - # Generate PollyConfig.cmake for the install tree. - unset(POLLY_EXPORTS) --set(POLLY_INSTALL_PREFIX "${CMAKE_INSTALL_PREFIX}") -+set(POLLY_INSTALL_PREFIX "") - set(POLLY_CONFIG_LLVM_CMAKE_DIR "${LLVM_BINARY_DIR}/${LLVM_INSTALL_PACKAGE_DIR}") --set(POLLY_CONFIG_CMAKE_DIR "${POLLY_INSTALL_PREFIX}/${POLLY_INSTALL_PACKAGE_DIR}") --set(POLLY_CONFIG_LIBRARY_DIRS "${POLLY_INSTALL_PREFIX}/lib${LLVM_LIBDIR_SUFFIX}") -+set(POLLY_CONFIG_CMAKE_DIR "${POLLY_INSTALL_PREFIX}${CMAKE_INSTALL_PREFIX}/${POLLY_INSTALL_PACKAGE_DIR}") -+set(POLLY_CONFIG_LIBRARY_DIRS "${POLLY_INSTALL_PREFIX}${CMAKE_INSTALL_FULL_LIBDIR}${LLVM_LIBDIR_SUFFIX}") - if (POLLY_BUNDLED_ISL) - set(POLLY_CONFIG_INCLUDE_DIRS -- "${POLLY_INSTALL_PREFIX}/include" -- "${POLLY_INSTALL_PREFIX}/include/polly" -+ "${POLLY_INSTALL_PREFIX}${CMAKE_INSTALL_FULL_LIBDIR}" -+ "${POLLY_INSTALL_PREFIX}${CMAKE_INSTALL_FULL_LIBDIR}/polly" - ) - else() - set(POLLY_CONFIG_INCLUDE_DIRS -- "${POLLY_INSTALL_PREFIX}/include" -+ "${POLLY_INSTALL_PREFIX}${CMAKE_INSTALL_FULL_INCLUDEDIR}" - ${ISL_INCLUDE_DIRS} - ) - endif() -@@ -100,12 +100,12 @@ endif() - foreach(tgt IN LISTS POLLY_CONFIG_EXPORTED_TARGETS) - get_target_property(tgt_type ${tgt} TYPE) - if (tgt_type STREQUAL "EXECUTABLE") -- set(tgt_prefix "bin/") -+ set(tgt_prefix "${CMAKE_INSTALL_BINDIR}/") - else() -- set(tgt_prefix "lib/") -+ set(tgt_prefix "${CMAKE_INSTALL_LIBDIR}/") - endif() - -- set(tgt_path "${CMAKE_INSTALL_PREFIX}/${tgt_prefix}$<TARGET_FILE_NAME:${tgt}>") -+ set(tgt_path "${tgt_prefix}$<TARGET_FILE_NAME:${tgt}>") - file(RELATIVE_PATH tgt_path ${POLLY_CONFIG_CMAKE_DIR} ${tgt_path}) - - if (NOT tgt_type STREQUAL "INTERFACE_LIBRARY") -diff --git a/tools/polly/cmake/polly_macros.cmake b/tools/polly/cmake/polly_macros.cmake -index 86de6f10686e..91f30891ccbe 100644 ---- a/tools/polly/cmake/polly_macros.cmake -+++ b/tools/polly/cmake/polly_macros.cmake -@@ -44,8 +44,8 @@ macro(add_polly_library name) - if (NOT LLVM_INSTALL_TOOLCHAIN_ONLY OR ${name} STREQUAL "LLVMPolly") - install(TARGETS ${name} - EXPORT LLVMExports -- LIBRARY DESTINATION lib${LLVM_LIBDIR_SUFFIX} -- ARCHIVE DESTINATION lib${LLVM_LIBDIR_SUFFIX}) -+ LIBRARY DESTINATION ${CMAKE_INSTALL_LIBDIR}${LLVM_LIBDIR_SUFFIX} -+ ARCHIVE DESTINATION ${CMAKE_INSTALL_LIBDIR}${LLVM_LIBDIR_SUFFIX}) - endif() - set_property(GLOBAL APPEND PROPERTY LLVM_EXPORTS ${name}) - endmacro(add_polly_library) -diff --git a/tools/polly/lib/External/CMakeLists.txt b/tools/polly/lib/External/CMakeLists.txt -index 8ffd984e542b..261cc19f3238 100644 ---- a/tools/polly/lib/External/CMakeLists.txt -+++ b/tools/polly/lib/External/CMakeLists.txt -@@ -274,7 +274,7 @@ if (POLLY_BUNDLED_ISL) - install(DIRECTORY - ${ISL_SOURCE_DIR}/include/ - ${ISL_BINARY_DIR}/include/ -- DESTINATION include/polly -+ DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}/polly - FILES_MATCHING - PATTERN "*.h" - PATTERN "CMakeFiles" EXCLUDE diff --git a/pkgs/development/compilers/llvm/10/llvm/gnu-install-dirs.patch b/pkgs/development/compilers/llvm/10/llvm/gnu-install-dirs.patch deleted file mode 100644 index 155bab32f4398..0000000000000 --- a/pkgs/development/compilers/llvm/10/llvm/gnu-install-dirs.patch +++ /dev/null @@ -1,416 +0,0 @@ -diff --git a/CMakeLists.txt b/CMakeLists.txt -index 0e85afa82c76..3e700d9c5fae 100644 ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -253,15 +253,21 @@ if (CMAKE_BUILD_TYPE AND - message(FATAL_ERROR "Invalid value for CMAKE_BUILD_TYPE: ${CMAKE_BUILD_TYPE}") - endif() - -+include(GNUInstallDirs) -+ - set(LLVM_LIBDIR_SUFFIX "" CACHE STRING "Define suffix of library directory name (32/64)" ) - --set(LLVM_TOOLS_INSTALL_DIR "bin" CACHE STRING "Path for binary subdirectory (defaults to 'bin')") -+set(LLVM_TOOLS_INSTALL_DIR "${CMAKE_INSTALL_BINDIR}" CACHE STRING -+ "Path for binary subdirectory (defaults to 'bin')") - mark_as_advanced(LLVM_TOOLS_INSTALL_DIR) - - set(LLVM_UTILS_INSTALL_DIR "${LLVM_TOOLS_INSTALL_DIR}" CACHE STRING - "Path to install LLVM utilities (enabled by LLVM_INSTALL_UTILS=ON) (defaults to LLVM_TOOLS_INSTALL_DIR)") - mark_as_advanced(LLVM_UTILS_INSTALL_DIR) - -+set(LLVM_INSTALL_CMAKE_DIR "${CMAKE_INSTALL_LIBDIR}${LLVM_LIBDIR_SUFFIX}/cmake/llvm" CACHE STRING -+ "Path for CMake subdirectory (defaults to lib/cmake/llvm)" ) -+ - # They are used as destination of target generators. - set(LLVM_RUNTIME_OUTPUT_INTDIR ${CMAKE_CURRENT_BINARY_DIR}/${CMAKE_CFG_INTDIR}/bin) - set(LLVM_LIBRARY_OUTPUT_INTDIR ${CMAKE_CURRENT_BINARY_DIR}/${CMAKE_CFG_INTDIR}/lib${LLVM_LIBDIR_SUFFIX}) -@@ -527,9 +533,9 @@ option (LLVM_ENABLE_SPHINX "Use Sphinx to generate llvm documentation." OFF) - option (LLVM_ENABLE_OCAMLDOC "Build OCaml bindings documentation." ON) - option (LLVM_ENABLE_BINDINGS "Build bindings." ON) - --set(LLVM_INSTALL_DOXYGEN_HTML_DIR "share/doc/llvm/doxygen-html" -+set(LLVM_INSTALL_DOXYGEN_HTML_DIR "${CMAKE_INSTALL_DOCDIR}/${project}/doxygen-html" - CACHE STRING "Doxygen-generated HTML documentation install directory") --set(LLVM_INSTALL_OCAMLDOC_HTML_DIR "share/doc/llvm/ocaml-html" -+set(LLVM_INSTALL_OCAMLDOC_HTML_DIR "${CMAKE_INSTALL_DOCDIR}/${project}/ocaml-html" - CACHE STRING "OCamldoc-generated HTML documentation install directory") - - option (LLVM_BUILD_EXTERNAL_COMPILER_RT -@@ -993,7 +999,7 @@ endif() - - if (NOT LLVM_INSTALL_TOOLCHAIN_ONLY) - install(DIRECTORY include/llvm include/llvm-c -- DESTINATION include -+ DESTINATION ${CMAKE_INSTALL_INCLUDEDIR} - COMPONENT llvm-headers - FILES_MATCHING - PATTERN "*.def" -@@ -1005,7 +1011,7 @@ if (NOT LLVM_INSTALL_TOOLCHAIN_ONLY) - ) - - install(DIRECTORY ${LLVM_INCLUDE_DIR}/llvm ${LLVM_INCLUDE_DIR}/llvm-c -- DESTINATION include -+ DESTINATION ${CMAKE_INSTALL_INCLUDEDIR} - COMPONENT llvm-headers - FILES_MATCHING - PATTERN "*.def" -@@ -1020,13 +1026,13 @@ if (NOT LLVM_INSTALL_TOOLCHAIN_ONLY) - - if (LLVM_INSTALL_MODULEMAPS) - install(DIRECTORY include/llvm include/llvm-c -- DESTINATION include -+ DESTINATION ${CMAKE_INSTALL_INCLUDEDIR} - COMPONENT llvm-headers - FILES_MATCHING - PATTERN "module.modulemap" - ) - install(FILES include/llvm/module.install.modulemap -- DESTINATION include/llvm -+ DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}/llvm - COMPONENT llvm-headers - RENAME "module.extern.modulemap" - ) -diff --git a/cmake/modules/AddLLVM.cmake b/cmake/modules/AddLLVM.cmake -index f5a1b0d6f238..a7387224d68f 100644 ---- a/cmake/modules/AddLLVM.cmake -+++ b/cmake/modules/AddLLVM.cmake -@@ -729,9 +729,9 @@ macro(add_llvm_library name) - - install(TARGETS ${name} - ${export_to_llvmexports} -- LIBRARY DESTINATION lib${LLVM_LIBDIR_SUFFIX} COMPONENT ${name} -- ARCHIVE DESTINATION lib${LLVM_LIBDIR_SUFFIX} COMPONENT ${name} -- RUNTIME DESTINATION bin COMPONENT ${name}) -+ LIBRARY DESTINATION ${CMAKE_INSTALL_LIBDIR}${LLVM_LIBDIR_SUFFIX} COMPONENT ${name} -+ ARCHIVE DESTINATION ${CMAKE_INSTALL_LIBDIR}${LLVM_LIBDIR_SUFFIX} COMPONENT ${name} -+ RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR} COMPONENT ${name}) - - if (NOT LLVM_ENABLE_IDE) - add_llvm_install_targets(install-${name} -@@ -934,7 +934,7 @@ function(process_llvm_pass_plugins) - "set(LLVM_STATIC_EXTENSIONS ${LLVM_STATIC_EXTENSIONS})") - install(FILES - ${llvm_cmake_builddir}/LLVMConfigExtensions.cmake -- DESTINATION ${LLVM_INSTALL_PACKAGE_DIR} -+ DESTINATION ${LLVM_INSTALL_CMAKE_DIR} - COMPONENT cmake-exports) - - set(ExtensionDef "${LLVM_BINARY_DIR}/include/llvm/Support/Extension.def") -@@ -1147,7 +1147,7 @@ macro(add_llvm_example name) - endif() - add_llvm_executable(${name} ${ARGN}) - if( LLVM_BUILD_EXAMPLES ) -- install(TARGETS ${name} RUNTIME DESTINATION examples) -+ install(TARGETS ${name} RUNTIME DESTINATION ${CMAKE_INSTALL_DOCDIR}/examples) - endif() - set_target_properties(${name} PROPERTIES FOLDER "Examples") - endmacro(add_llvm_example name) -@@ -1713,7 +1713,7 @@ function(llvm_install_library_symlink name dest type) - set(full_name ${CMAKE_${type}_LIBRARY_PREFIX}${name}${CMAKE_${type}_LIBRARY_SUFFIX}) - set(full_dest ${CMAKE_${type}_LIBRARY_PREFIX}${dest}${CMAKE_${type}_LIBRARY_SUFFIX}) - -- set(output_dir lib${LLVM_LIBDIR_SUFFIX}) -+ set(output_dir ${CMAKE_INSTALL_FULL_LIBDIR}${LLVM_LIBDIR_SUFFIX}) - if(WIN32 AND "${type}" STREQUAL "SHARED") - set(output_dir bin) - endif() -@@ -1730,7 +1730,7 @@ function(llvm_install_library_symlink name dest type) - endif() - endfunction() - --function(llvm_install_symlink name dest) -+function(llvm_install_symlink name dest output_dir) - cmake_parse_arguments(ARG "ALWAYS_GENERATE" "COMPONENT" "" ${ARGN}) - foreach(path ${CMAKE_MODULE_PATH}) - if(EXISTS ${path}/LLVMInstallSymlink.cmake) -@@ -1753,7 +1753,7 @@ function(llvm_install_symlink name dest) - set(full_dest ${dest}${CMAKE_EXECUTABLE_SUFFIX}) - - install(SCRIPT ${INSTALL_SYMLINK} -- CODE "install_symlink(${full_name} ${full_dest} ${LLVM_TOOLS_INSTALL_DIR})" -+ CODE "install_symlink(${full_name} ${full_dest} ${output_dir})" - COMPONENT ${component}) - - if (NOT LLVM_ENABLE_IDE AND NOT ARG_ALWAYS_GENERATE) -@@ -1836,7 +1836,8 @@ function(add_llvm_tool_symlink link_name target) - endif() - - if ((TOOL_IS_TOOLCHAIN OR NOT LLVM_INSTALL_TOOLCHAIN_ONLY) AND LLVM_BUILD_TOOLS) -- llvm_install_symlink(${link_name} ${target}) -+ GNUInstallDirs_get_absolute_install_dir(output_dir LLVM_TOOLS_INSTALL_DIR) -+ llvm_install_symlink(${link_name} ${target} ${output_dir}) - endif() - endif() - endfunction() -@@ -1958,9 +1959,9 @@ function(llvm_setup_rpath name) - - if (APPLE) - set(_install_name_dir INSTALL_NAME_DIR "@rpath") -- set(_install_rpath "@loader_path/../lib${LLVM_LIBDIR_SUFFIX}" ${extra_libdir}) -+ set(_install_rpath "@loader_path/../${CMAKE_INSTALL_LIBDIR}${LLVM_LIBDIR_SUFFIX}" ${extra_libdir}) - elseif(UNIX) -- set(_install_rpath "\$ORIGIN/../lib${LLVM_LIBDIR_SUFFIX}" ${extra_libdir}) -+ set(_install_rpath "\$ORIGIN/../${CMAKE_INSTALL_LIBDIR}${LLVM_LIBDIR_SUFFIX}" ${extra_libdir}) - if(${CMAKE_SYSTEM_NAME} MATCHES "(FreeBSD|DragonFly)") - set_property(TARGET ${name} APPEND_STRING PROPERTY - LINK_FLAGS " -Wl,-z,origin ") -diff --git a/cmake/modules/AddOCaml.cmake b/cmake/modules/AddOCaml.cmake -index 554046b20edf..4d1ad980641e 100644 ---- a/cmake/modules/AddOCaml.cmake -+++ b/cmake/modules/AddOCaml.cmake -@@ -144,9 +144,9 @@ function(add_ocaml_library name) - endforeach() - - if( APPLE ) -- set(ocaml_rpath "@executable_path/../../../lib${LLVM_LIBDIR_SUFFIX}") -+ set(ocaml_rpath "@executable_path/../../../${CMAKE_INSTALL_LIBDIR}${LLVM_LIBDIR_SUFFIX}") - elseif( UNIX ) -- set(ocaml_rpath "\\$ORIGIN/../../../lib${LLVM_LIBDIR_SUFFIX}") -+ set(ocaml_rpath "\\$ORIGIN/../../../${CMAKE_INSTALL_LIBDIR}${LLVM_LIBDIR_SUFFIX}") - endif() - list(APPEND ocaml_flags "-ldopt" "-Wl,-rpath,${ocaml_rpath}") - -diff --git a/cmake/modules/AddSphinxTarget.cmake b/cmake/modules/AddSphinxTarget.cmake -index 2bf654b60c44..450ee45d86e6 100644 ---- a/cmake/modules/AddSphinxTarget.cmake -+++ b/cmake/modules/AddSphinxTarget.cmake -@@ -78,7 +78,7 @@ function (add_sphinx_target builder project) - endif() - elseif (builder STREQUAL html) - string(TOUPPER "${project}" project_upper) -- set(${project_upper}_INSTALL_SPHINX_HTML_DIR "share/doc/${project}/html" -+ set(${project_upper}_INSTALL_SPHINX_HTML_DIR "${CMAKE_INSTALL_DOCDIR}/${project}/html" - CACHE STRING "HTML documentation install directory for ${project}") - - # '/.' indicates: copy the contents of the directory directly into -diff --git a/cmake/modules/CMakeLists.txt b/cmake/modules/CMakeLists.txt -index af757d6199a8..b0fb7e7705d1 100644 ---- a/cmake/modules/CMakeLists.txt -+++ b/cmake/modules/CMakeLists.txt -@@ -1,4 +1,4 @@ --set(LLVM_INSTALL_PACKAGE_DIR lib${LLVM_LIBDIR_SUFFIX}/cmake/llvm) -+set(LLVM_INSTALL_PACKAGE_DIR ${LLVM_INSTALL_CMAKE_DIR} CACHE STRING "Path for CMake subdirectory (defaults to 'cmake/llvm')") - set(llvm_cmake_builddir "${LLVM_BINARY_DIR}/${LLVM_INSTALL_PACKAGE_DIR}") - - # First for users who use an installed LLVM, create the LLVMExports.cmake file. -@@ -96,13 +96,13 @@ foreach(p ${_count}) - set(LLVM_CONFIG_CODE "${LLVM_CONFIG_CODE} - get_filename_component(LLVM_INSTALL_PREFIX \"\${LLVM_INSTALL_PREFIX}\" PATH)") - endforeach(p) --set(LLVM_CONFIG_INCLUDE_DIRS "\${LLVM_INSTALL_PREFIX}/include") -+set(LLVM_CONFIG_INCLUDE_DIRS "\${LLVM_INSTALL_PREFIX}/${CMAKE_INSTALL_INCLUDEDIR}") - set(LLVM_CONFIG_INCLUDE_DIR "${LLVM_CONFIG_INCLUDE_DIRS}") - set(LLVM_CONFIG_MAIN_INCLUDE_DIR "${LLVM_CONFIG_INCLUDE_DIRS}") --set(LLVM_CONFIG_LIBRARY_DIRS "\${LLVM_INSTALL_PREFIX}/lib\${LLVM_LIBDIR_SUFFIX}") -+set(LLVM_CONFIG_LIBRARY_DIRS "\${LLVM_INSTALL_PREFIX}/${CMAKE_INSTALL_LIBDIR}\${LLVM_LIBDIR_SUFFIX}") - set(LLVM_CONFIG_CMAKE_DIR "\${LLVM_INSTALL_PREFIX}/${LLVM_INSTALL_PACKAGE_DIR}") - set(LLVM_CONFIG_BINARY_DIR "\${LLVM_INSTALL_PREFIX}") --set(LLVM_CONFIG_TOOLS_BINARY_DIR "\${LLVM_INSTALL_PREFIX}/bin") -+set(LLVM_CONFIG_TOOLS_BINARY_DIR "\${LLVM_INSTALL_PREFIX}/${CMAKE_INSTALL_BINDIR}") - set(LLVM_CONFIG_EXPORTS_FILE "\${LLVM_CMAKE_DIR}/LLVMExports.cmake") - set(LLVM_CONFIG_EXPORTS "${LLVM_EXPORTS}") - configure_file( -diff --git a/cmake/modules/LLVMInstallSymlink.cmake b/cmake/modules/LLVMInstallSymlink.cmake -index 09fed8085c23..aa79f192abf0 100644 ---- a/cmake/modules/LLVMInstallSymlink.cmake -+++ b/cmake/modules/LLVMInstallSymlink.cmake -@@ -10,7 +10,7 @@ function(install_symlink name target outdir) - set(LINK_OR_COPY copy) - endif() - -- set(bindir "${DESTDIR}${CMAKE_INSTALL_PREFIX}/${outdir}/") -+ set(bindir "${DESTDIR}${outdir}/") - - message(STATUS "Creating ${name}") - -diff --git a/docs/CMake.rst b/docs/CMake.rst -index a86ebb3a37bd..e720711e2b3c 100644 ---- a/docs/CMake.rst -+++ b/docs/CMake.rst -@@ -196,7 +196,7 @@ CMake manual, or execute ``cmake --help-variable VARIABLE_NAME``. - **LLVM_LIBDIR_SUFFIX**:STRING - Extra suffix to append to the directory where libraries are to be - installed. On a 64-bit architecture, one could use ``-DLLVM_LIBDIR_SUFFIX=64`` -- to install libraries to ``/usr/lib64``. -+ to install libraries to ``/usr/lib64``. See also ``CMAKE_INSTALL_LIBDIR``. - - **CMAKE_C_FLAGS**:STRING - Extra flags to use when compiling C source files. -@@ -516,8 +516,8 @@ LLVM-specific variables - - **LLVM_INSTALL_DOXYGEN_HTML_DIR**:STRING - The path to install Doxygen-generated HTML documentation to. This path can -- either be absolute or relative to the CMAKE_INSTALL_PREFIX. Defaults to -- `share/doc/llvm/doxygen-html`. -+ either be absolute or relative to the ``CMAKE_INSTALL_PREFIX``. Defaults to -+ `${CMAKE_INSTALL_DOCDIR}/${project}/doxygen-html`. - - **LLVM_ENABLE_SPHINX**:BOOL - If specified, CMake will search for the ``sphinx-build`` executable and will make -@@ -548,13 +548,33 @@ LLVM-specific variables - - **LLVM_INSTALL_SPHINX_HTML_DIR**:STRING - The path to install Sphinx-generated HTML documentation to. This path can -- either be absolute or relative to the CMAKE_INSTALL_PREFIX. Defaults to -- `share/doc/llvm/html`. -+ either be absolute or relative to the ``CMAKE_INSTALL_PREFIX``. Defaults to -+ `${CMAKE_INSTALL_DOCDIR}/${project}/html`. - - **LLVM_INSTALL_OCAMLDOC_HTML_DIR**:STRING - The path to install OCamldoc-generated HTML documentation to. This path can -- either be absolute or relative to the CMAKE_INSTALL_PREFIX. Defaults to -- `share/doc/llvm/ocaml-html`. -+ either be absolute or relative to the ``CMAKE_INSTALL_PREFIX``. Defaults to -+ `${CMAKE_INSTALL_DOCDIR}/${project}/ocaml-html`. -+ -+**CMAKE_INSTALL_BINDIR**:STRING -+ The path to install binary tools, relative to the ``CMAKE_INSTALL_PREFIX``. -+ Defaults to `bin`. -+ -+**CMAKE_INSTALL_LIBDIR**:STRING -+ The path to install libraries, relative to the ``CMAKE_INSTALL_PREFIX``. -+ Defaults to `lib`. -+ -+**CMAKE_INSTALL_INCLUDEDIR**:STRING -+ The path to install header files, relative to the ``CMAKE_INSTALL_PREFIX``. -+ Defaults to `include`. -+ -+**CMAKE_INSTALL_DOCDIR**:STRING -+ The path to install documentation, relative to the ``CMAKE_INSTALL_PREFIX``. -+ Defaults to `share/doc`. -+ -+**CMAKE_INSTALL_MANDIR**:STRING -+ The path to install manpage files, relative to the ``CMAKE_INSTALL_PREFIX``. -+ Defaults to `share/man`. - - **LLVM_CREATE_XCODE_TOOLCHAIN**:BOOL - macOS Only: If enabled CMake will generate a target named -@@ -740,9 +760,11 @@ the ``cmake`` command or by setting it directly in ``ccmake`` or ``cmake-gui``). - - This file is available in two different locations. - --* ``<INSTALL_PREFIX>/lib/cmake/llvm/LLVMConfig.cmake`` where -- ``<INSTALL_PREFIX>`` is the install prefix of an installed version of LLVM. -- On Linux typically this is ``/usr/lib/cmake/llvm/LLVMConfig.cmake``. -+* ``<LLVM_INSTALL_PACKAGE_DIR>LLVMConfig.cmake`` where -+ ``<LLVM_INSTALL_PACKAGE_DIR>`` is the location where LLVM CMake modules are -+ installed as part of an installed version of LLVM. This is typically -+ ``cmake/llvm/`` within the lib directory. On Linux, this is typically -+ ``/usr/lib/cmake/llvm/LLVMConfig.cmake``. - - * ``<LLVM_BUILD_ROOT>/lib/cmake/llvm/LLVMConfig.cmake`` where - ``<LLVM_BUILD_ROOT>`` is the root of the LLVM build tree. **Note: this is only -diff --git a/examples/Bye/CMakeLists.txt b/examples/Bye/CMakeLists.txt -index 3206f90d0916..1822965fc35f 100644 ---- a/examples/Bye/CMakeLists.txt -+++ b/examples/Bye/CMakeLists.txt -@@ -9,5 +9,5 @@ add_llvm_pass_plugin(Bye - BUILDTREE_ONLY - ) - --install(TARGETS ${name} RUNTIME DESTINATION examples) -+install(TARGETS ${name} RUNTIME DESTINATION ${CMAKE_INSTALL_DOCDIR}/examples) - set_target_properties(${name} PROPERTIES FOLDER "Examples") -diff --git a/include/llvm/CMakeLists.txt b/include/llvm/CMakeLists.txt -index 1d5ca3ba92b0..026f5453c1da 100644 ---- a/include/llvm/CMakeLists.txt -+++ b/include/llvm/CMakeLists.txt -@@ -4,5 +4,5 @@ add_subdirectory(Support) - # If we're doing an out-of-tree build, copy a module map for generated - # header files into the build area. - if (NOT "${CMAKE_SOURCE_DIR}" STREQUAL "${CMAKE_BINARY_DIR}") -- configure_file(module.modulemap.build module.modulemap COPYONLY) -+ configure_file(module.modulemap.build ${LLVM_INCLUDE_DIR}/module.modulemap COPYONLY) - endif (NOT "${CMAKE_SOURCE_DIR}" STREQUAL "${CMAKE_BINARY_DIR}") -diff --git a/tools/llvm-config/BuildVariables.inc.in b/tools/llvm-config/BuildVariables.inc.in -index 63cef75368b7..6295478b1f3d 100644 ---- a/tools/llvm-config/BuildVariables.inc.in -+++ b/tools/llvm-config/BuildVariables.inc.in -@@ -23,6 +23,10 @@ - #define LLVM_CXXFLAGS "@LLVM_CXXFLAGS@" - #define LLVM_BUILDMODE "@LLVM_BUILDMODE@" - #define LLVM_LIBDIR_SUFFIX "@LLVM_LIBDIR_SUFFIX@" -+#define LLVM_INSTALL_BINDIR "@CMAKE_INSTALL_BINDIR@" -+#define LLVM_INSTALL_LIBDIR "@CMAKE_INSTALL_LIBDIR@" -+#define LLVM_INSTALL_INCLUDEDIR "@CMAKE_INSTALL_INCLUDEDIR@" -+#define LLVM_INSTALL_CMAKEDIR "@LLVM_INSTALL_CMAKE_DIR@" - #define LLVM_TARGETS_BUILT "@LLVM_TARGETS_BUILT@" - #define LLVM_SYSTEM_LIBS "@LLVM_SYSTEM_LIBS@" - #define LLVM_BUILD_SYSTEM "@LLVM_BUILD_SYSTEM@" -diff --git a/tools/llvm-config/llvm-config.cpp b/tools/llvm-config/llvm-config.cpp -index fb12e29a36a8..dbb6c2b90332 100644 ---- a/tools/llvm-config/llvm-config.cpp -+++ b/tools/llvm-config/llvm-config.cpp -@@ -358,12 +358,26 @@ int main(int argc, char **argv) { - ("-I" + ActiveIncludeDir + " " + "-I" + ActiveObjRoot + "/include"); - } else { - ActivePrefix = CurrentExecPrefix; -- ActiveIncludeDir = ActivePrefix + "/include"; -- SmallString<256> path(StringRef(LLVM_TOOLS_INSTALL_DIR)); -- sys::fs::make_absolute(ActivePrefix, path); -- ActiveBinDir = path.str(); -- ActiveLibDir = ActivePrefix + "/lib" + LLVM_LIBDIR_SUFFIX; -- ActiveCMakeDir = ActiveLibDir + "/cmake/llvm"; -+ { -+ SmallString<256> path(StringRef(LLVM_INSTALL_INCLUDEDIR)); -+ sys::fs::make_absolute(ActivePrefix, path); -+ ActiveIncludeDir = std::string(path.str()); -+ } -+ { -+ SmallString<256> path(StringRef(LLVM_INSTALL_BINDIR)); -+ sys::fs::make_absolute(ActivePrefix, path); -+ ActiveBinDir = std::string(path.str()); -+ } -+ { -+ SmallString<256> path(StringRef(LLVM_INSTALL_LIBDIR LLVM_LIBDIR_SUFFIX)); -+ sys::fs::make_absolute(ActivePrefix, path); -+ ActiveLibDir = std::string(path.str()); -+ } -+ { -+ SmallString<256> path(StringRef(LLVM_INSTALL_CMAKEDIR)); -+ sys::fs::make_absolute(ActivePrefix, path); -+ ActiveCMakeDir = std::string(path.str()); -+ } - ActiveIncludeOption = "-I" + ActiveIncludeDir; - } - -diff --git a/tools/lto/CMakeLists.txt b/tools/lto/CMakeLists.txt -index b86e4abd01a7..02ce5773f17d 100644 ---- a/tools/lto/CMakeLists.txt -+++ b/tools/lto/CMakeLists.txt -@@ -23,7 +23,7 @@ set(LLVM_EXPORTED_SYMBOL_FILE ${CMAKE_CURRENT_SOURCE_DIR}/lto.exports) - add_llvm_library(LTO SHARED INSTALL_WITH_TOOLCHAIN ${SOURCES} DEPENDS intrinsics_gen) - - install(FILES ${LLVM_MAIN_INCLUDE_DIR}/llvm-c/lto.h -- DESTINATION include/llvm-c -+ DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}/llvm-c - COMPONENT LTO) - - if (APPLE) -diff --git a/tools/opt-viewer/CMakeLists.txt b/tools/opt-viewer/CMakeLists.txt -index ead73ec13a8f..250362021f17 100644 ---- a/tools/opt-viewer/CMakeLists.txt -+++ b/tools/opt-viewer/CMakeLists.txt -@@ -8,7 +8,7 @@ set (files - - foreach (file ${files}) - install(PROGRAMS ${file} -- DESTINATION share/opt-viewer -+ DESTINATION ${CMAKE_INSTALL_DATADIR}/opt-viewer - COMPONENT opt-viewer) - endforeach (file) - -diff --git a/tools/remarks-shlib/CMakeLists.txt b/tools/remarks-shlib/CMakeLists.txt -index e948496c603a..1f4df8a98b10 100644 ---- a/tools/remarks-shlib/CMakeLists.txt -+++ b/tools/remarks-shlib/CMakeLists.txt -@@ -11,7 +11,7 @@ set(LLVM_EXPORTED_SYMBOL_FILE ${CMAKE_CURRENT_SOURCE_DIR}/Remarks.exports) - add_llvm_library(Remarks SHARED INSTALL_WITH_TOOLCHAIN ${SOURCES}) - - install(FILES ${LLVM_MAIN_INCLUDE_DIR}/llvm-c/Remarks.h -- DESTINATION include/llvm-c -+ DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}/llvm-c - COMPONENT Remarks) - - if (APPLE) diff --git a/pkgs/development/compilers/llvm/10/openmp/default.nix b/pkgs/development/compilers/llvm/10/openmp/default.nix deleted file mode 100644 index 012f882e5871a..0000000000000 --- a/pkgs/development/compilers/llvm/10/openmp/default.nix +++ /dev/null @@ -1,37 +0,0 @@ -{ lib -, stdenv -, llvm_meta -, fetch -, cmake -, llvm -, targetLlvm -, perl -, version -}: - -stdenv.mkDerivation rec { - pname = "openmp"; - inherit version; - - src = fetch pname "0i4bn84lkpm5w3qkpvwm5z6jdj8fynp7d3bcasa1xyq4is6757yi"; - - nativeBuildInputs = [ cmake perl ]; - buildInputs = [ - (if stdenv.buildPlatform == stdenv.hostPlatform then llvm else targetLlvm) - ]; - - meta = llvm_meta // { - homepage = "https://openmp.llvm.org/"; - description = "Support for the OpenMP language"; - longDescription = '' - The OpenMP subproject of LLVM contains the components required to build an - executable OpenMP program that are outside the compiler itself. - Contains the code for the runtime library against which code compiled by - "clang -fopenmp" must be linked before it can run and the library that - supports offload to target devices. - ''; - # "All of the code is dual licensed under the MIT license and the UIUC - # License (a BSD-like license)": - license = with lib.licenses; [ mit ncsa ]; - }; -} diff --git a/pkgs/development/compilers/llvm/11/compiler-rt/default.nix b/pkgs/development/compilers/llvm/11/compiler-rt/default.nix index 38dc7a0fbdc85..7fddc6e924b9e 100644 --- a/pkgs/development/compilers/llvm/11/compiler-rt/default.nix +++ b/pkgs/development/compilers/llvm/11/compiler-rt/default.nix @@ -135,6 +135,6 @@ stdenv.mkDerivation { license = with lib.licenses; [ mit ncsa ]; # compiler-rt requires a Clang stdenv on 32-bit RISC-V: # https://reviews.llvm.org/D43106#1019077 - broken = stdenv.hostPlatform.isRiscV && stdenv.hostPlatform.is32bit && !stdenv.cc.isClang; + broken = stdenv.hostPlatform.isRiscV32 && !stdenv.cc.isClang; }; } diff --git a/pkgs/development/compilers/llvm/11/default.nix b/pkgs/development/compilers/llvm/11/default.nix index 2d9790fe61ace..3044199e28112 100644 --- a/pkgs/development/compilers/llvm/11/default.nix +++ b/pkgs/development/compilers/llvm/11/default.nix @@ -173,6 +173,7 @@ let echo "-B${targetLlvmLibraries.compiler-rt}/lib" >> $out/nix-support/cc-cflags '' + lib.optionalString (!stdenv.targetPlatform.isWasm) '' echo "--unwindlib=libunwind" >> $out/nix-support/cc-cflags + echo "-L${targetLlvmLibraries.libunwind}/lib" >> $out/nix-support/cc-ldflags '' + lib.optionalString (!stdenv.targetPlatform.isWasm && stdenv.targetPlatform.useLLVM or false) '' echo "-lunwind" >> $out/nix-support/cc-ldflags '' + lib.optionalString stdenv.targetPlatform.isWasm '' diff --git a/pkgs/development/compilers/llvm/11/llvm/default.nix b/pkgs/development/compilers/llvm/11/llvm/default.nix index 01e6483ad6408..423b08396666b 100644 --- a/pkgs/development/compilers/llvm/11/llvm/default.nix +++ b/pkgs/development/compilers/llvm/11/llvm/default.nix @@ -256,7 +256,7 @@ in stdenv.mkDerivation (rec { ] ++ optionals isDarwin [ "-DLLVM_ENABLE_LIBCXX=ON" "-DCAN_TARGET_i386=false" - ] ++ optionals (stdenv.hostPlatform != stdenv.buildPlatform) [ + ] ++ optionals ((stdenv.hostPlatform != stdenv.buildPlatform) && !(stdenv.buildPlatform.canExecute stdenv.hostPlatform)) [ "-DCMAKE_CROSSCOMPILING=True" "-DLLVM_TABLEGEN=${buildLlvmTools.llvm}/bin/llvm-tblgen" ( diff --git a/pkgs/development/compilers/llvm/12/compiler-rt/default.nix b/pkgs/development/compilers/llvm/12/compiler-rt/default.nix index 9362ee8d1147d..4b2bdad454ae2 100644 --- a/pkgs/development/compilers/llvm/12/compiler-rt/default.nix +++ b/pkgs/development/compilers/llvm/12/compiler-rt/default.nix @@ -124,5 +124,8 @@ stdenv.mkDerivation { # "All of the code in the compiler-rt project is dual licensed under the MIT # license and the UIUC License (a BSD-like license)": license = with lib.licenses; [ mit ncsa ]; + # compiler-rt requires a Clang stdenv on 32-bit RISC-V: + # https://reviews.llvm.org/D43106#1019077 + broken = stdenv.hostPlatform.isRiscV32 && !stdenv.cc.isClang; }; } diff --git a/pkgs/development/compilers/llvm/12/default.nix b/pkgs/development/compilers/llvm/12/default.nix index 4de0488270715..a38e35e91f6d0 100644 --- a/pkgs/development/compilers/llvm/12/default.nix +++ b/pkgs/development/compilers/llvm/12/default.nix @@ -173,6 +173,7 @@ let echo "-B${targetLlvmLibraries.compiler-rt}/lib" >> $out/nix-support/cc-cflags '' + lib.optionalString (!stdenv.targetPlatform.isWasm) '' echo "--unwindlib=libunwind" >> $out/nix-support/cc-cflags + echo "-L${targetLlvmLibraries.libunwind}/lib" >> $out/nix-support/cc-ldflags '' + lib.optionalString (!stdenv.targetPlatform.isWasm && stdenv.targetPlatform.useLLVM or false) '' echo "-lunwind" >> $out/nix-support/cc-ldflags '' + lib.optionalString stdenv.targetPlatform.isWasm '' diff --git a/pkgs/development/compilers/llvm/12/llvm/default.nix b/pkgs/development/compilers/llvm/12/llvm/default.nix index 97d8f27672e3d..3263c4ddaf359 100644 --- a/pkgs/development/compilers/llvm/12/llvm/default.nix +++ b/pkgs/development/compilers/llvm/12/llvm/default.nix @@ -244,7 +244,7 @@ in stdenv.mkDerivation (rec { ] ++ optionals isDarwin [ "-DLLVM_ENABLE_LIBCXX=ON" "-DCAN_TARGET_i386=false" - ] ++ optionals (stdenv.hostPlatform != stdenv.buildPlatform) [ + ] ++ optionals ((stdenv.hostPlatform != stdenv.buildPlatform) && !(stdenv.buildPlatform.canExecute stdenv.hostPlatform)) [ "-DCMAKE_CROSSCOMPILING=True" "-DLLVM_TABLEGEN=${buildLlvmTools.llvm}/bin/llvm-tblgen" ( diff --git a/pkgs/development/compilers/llvm/13/compiler-rt/default.nix b/pkgs/development/compilers/llvm/13/compiler-rt/default.nix index e36aec42e905a..b6a9c13ba9436 100644 --- a/pkgs/development/compilers/llvm/13/compiler-rt/default.nix +++ b/pkgs/development/compilers/llvm/13/compiler-rt/default.nix @@ -131,5 +131,8 @@ stdenv.mkDerivation { # "All of the code in the compiler-rt project is dual licensed under the MIT # license and the UIUC License (a BSD-like license)": license = with lib.licenses; [ mit ncsa ]; + # compiler-rt requires a Clang stdenv on 32-bit RISC-V: + # https://reviews.llvm.org/D43106#1019077 + broken = stdenv.hostPlatform.isRiscV32 && !stdenv.cc.isClang; }; } diff --git a/pkgs/development/compilers/llvm/13/default.nix b/pkgs/development/compilers/llvm/13/default.nix index c46ebee1d0dba..c811b24c48ef4 100644 --- a/pkgs/development/compilers/llvm/13/default.nix +++ b/pkgs/development/compilers/llvm/13/default.nix @@ -213,6 +213,7 @@ in let echo "-B${targetLlvmLibraries.compiler-rt}/lib" >> $out/nix-support/cc-cflags '' + lib.optionalString (!stdenv.targetPlatform.isWasm) '' echo "--unwindlib=libunwind" >> $out/nix-support/cc-cflags + echo "-L${targetLlvmLibraries.libunwind}/lib" >> $out/nix-support/cc-ldflags '' + lib.optionalString (!stdenv.targetPlatform.isWasm && stdenv.targetPlatform.useLLVM or false) '' echo "-lunwind" >> $out/nix-support/cc-ldflags '' + lib.optionalString stdenv.targetPlatform.isWasm '' diff --git a/pkgs/development/compilers/llvm/13/llvm/default.nix b/pkgs/development/compilers/llvm/13/llvm/default.nix index 2a7c1c1867cb3..1e71cdd89c6c0 100644 --- a/pkgs/development/compilers/llvm/13/llvm/default.nix +++ b/pkgs/development/compilers/llvm/13/llvm/default.nix @@ -206,7 +206,7 @@ in stdenv.mkDerivation (rec { ] ++ optionals isDarwin [ "-DLLVM_ENABLE_LIBCXX=ON" "-DCAN_TARGET_i386=false" - ] ++ optionals (stdenv.hostPlatform != stdenv.buildPlatform) [ + ] ++ optionals ((stdenv.hostPlatform != stdenv.buildPlatform) && !(stdenv.buildPlatform.canExecute stdenv.hostPlatform)) [ "-DCMAKE_CROSSCOMPILING=True" "-DLLVM_TABLEGEN=${buildLlvmTools.llvm}/bin/llvm-tblgen" ( diff --git a/pkgs/development/compilers/llvm/14/compiler-rt/default.nix b/pkgs/development/compilers/llvm/14/compiler-rt/default.nix index 3aa91bc953b21..1652b3a7fac0f 100644 --- a/pkgs/development/compilers/llvm/14/compiler-rt/default.nix +++ b/pkgs/development/compilers/llvm/14/compiler-rt/default.nix @@ -139,5 +139,8 @@ stdenv.mkDerivation { # "All of the code in the compiler-rt project is dual licensed under the MIT # license and the UIUC License (a BSD-like license)": license = with lib.licenses; [ mit ncsa ]; + # compiler-rt requires a Clang stdenv on 32-bit RISC-V: + # https://reviews.llvm.org/D43106#1019077 + broken = stdenv.hostPlatform.isRiscV32 && !stdenv.cc.isClang; }; } diff --git a/pkgs/development/compilers/llvm/14/default.nix b/pkgs/development/compilers/llvm/14/default.nix index 3513833c6f560..090eec2348869 100644 --- a/pkgs/development/compilers/llvm/14/default.nix +++ b/pkgs/development/compilers/llvm/14/default.nix @@ -216,6 +216,7 @@ in let (!stdenv.targetPlatform.isWasm && stdenv.targetPlatform.useLLVM or false) "-lunwind" ++ lib.optional stdenv.targetPlatform.isWasm "-fno-exceptions"; + nixSupport.cc-ldflags = lib.optionals (!stdenv.targetPlatform.isWasm) [ "-L${targetLlvmLibraries.libunwind}/lib" ]; }; clangNoLibcxx = wrapCCWith rec { diff --git a/pkgs/development/compilers/llvm/14/llvm/default.nix b/pkgs/development/compilers/llvm/14/llvm/default.nix index 6eec4c563f9c1..eab49d326ad4b 100644 --- a/pkgs/development/compilers/llvm/14/llvm/default.nix +++ b/pkgs/development/compilers/llvm/14/llvm/default.nix @@ -205,7 +205,7 @@ in stdenv.mkDerivation (rec { ] ++ optionals isDarwin [ "-DLLVM_ENABLE_LIBCXX=ON" "-DCAN_TARGET_i386=false" - ] ++ optionals (stdenv.hostPlatform != stdenv.buildPlatform) [ + ] ++ optionals ((stdenv.hostPlatform != stdenv.buildPlatform) && !(stdenv.buildPlatform.canExecute stdenv.hostPlatform)) [ "-DCMAKE_CROSSCOMPILING=True" "-DLLVM_TABLEGEN=${buildLlvmTools.llvm}/bin/llvm-tblgen" ( diff --git a/pkgs/development/compilers/llvm/15/compiler-rt/default.nix b/pkgs/development/compilers/llvm/15/compiler-rt/default.nix index 9817899345a9b..fbf25786efee6 100644 --- a/pkgs/development/compilers/llvm/15/compiler-rt/default.nix +++ b/pkgs/development/compilers/llvm/15/compiler-rt/default.nix @@ -138,5 +138,8 @@ stdenv.mkDerivation { # "All of the code in the compiler-rt project is dual licensed under the MIT # license and the UIUC License (a BSD-like license)": license = with lib.licenses; [ mit ncsa ]; + # compiler-rt requires a Clang stdenv on 32-bit RISC-V: + # https://reviews.llvm.org/D43106#1019077 + broken = stdenv.hostPlatform.isRiscV32 && !stdenv.cc.isClang; }; } diff --git a/pkgs/development/compilers/llvm/15/default.nix b/pkgs/development/compilers/llvm/15/default.nix index 307198b5e9a39..d9ca0819f2e07 100644 --- a/pkgs/development/compilers/llvm/15/default.nix +++ b/pkgs/development/compilers/llvm/15/default.nix @@ -221,6 +221,7 @@ in let (!stdenv.targetPlatform.isWasm && stdenv.targetPlatform.useLLVM or false) "-lunwind" ++ lib.optional stdenv.targetPlatform.isWasm "-fno-exceptions"; + nixSupport.cc-ldflags = lib.optionals (!stdenv.targetPlatform.isWasm) [ "-L${targetLlvmLibraries.libunwind}/lib" ]; }; clangNoLibcxx = wrapCCWith rec { diff --git a/pkgs/development/compilers/llvm/15/libcxx/default.nix b/pkgs/development/compilers/llvm/15/libcxx/default.nix index ed5f48e8c38fe..be56770039d80 100644 --- a/pkgs/development/compilers/llvm/15/libcxx/default.nix +++ b/pkgs/development/compilers/llvm/15/libcxx/default.nix @@ -56,6 +56,14 @@ stdenv.mkDerivation rec { hash = "sha256-AaM9A6tQ4YAw7uDqCIV4VaiUyLZv+unwcOqbakwW9/k="; relative = "libcxx"; }) + # fix for https://github.com/NixOS/nixpkgs/issues/269548 + # https://github.com/llvm/llvm-project/pull/77218 + (fetchpatch { + name = "darwin-system-libcxxabi-link-flags.patch"; + url = "https://github.com/llvm/llvm-project/commit/c5b89b29ee6e3c444a355fd1cf733ce7ab2e316a.patch"; + hash = "sha256-LNoPg1KCoP8RWxU/AzHR52f4Dww24I9BGQJedMhFxyQ="; + relative = "libcxx"; + }) ] ++ lib.optionals stdenv.hostPlatform.isMusl [ ../../libcxx-0001-musl-hacks.patch ]; diff --git a/pkgs/development/compilers/llvm/15/llvm/default.nix b/pkgs/development/compilers/llvm/15/llvm/default.nix index 0b9e83259b2c5..4f17678ba14f7 100644 --- a/pkgs/development/compilers/llvm/15/llvm/default.nix +++ b/pkgs/development/compilers/llvm/15/llvm/default.nix @@ -343,7 +343,7 @@ in stdenv.mkDerivation (rec { ] ++ optionals isDarwin [ "-DLLVM_ENABLE_LIBCXX=ON" "-DCAN_TARGET_i386=false" - ] ++ optionals (stdenv.hostPlatform != stdenv.buildPlatform) [ + ] ++ optionals ((stdenv.hostPlatform != stdenv.buildPlatform) && !(stdenv.buildPlatform.canExecute stdenv.hostPlatform)) [ "-DCMAKE_CROSSCOMPILING=True" "-DLLVM_TABLEGEN=${buildLlvmTools.llvm}/bin/llvm-tblgen" ( diff --git a/pkgs/development/compilers/llvm/16/compiler-rt/default.nix b/pkgs/development/compilers/llvm/16/compiler-rt/default.nix index 808df140e772d..0f15a9e12cde5 100644 --- a/pkgs/development/compilers/llvm/16/compiler-rt/default.nix +++ b/pkgs/development/compilers/llvm/16/compiler-rt/default.nix @@ -152,5 +152,8 @@ stdenv.mkDerivation { # "All of the code in the compiler-rt project is dual licensed under the MIT # license and the UIUC License (a BSD-like license)": license = with lib.licenses; [ mit ncsa ]; + # compiler-rt requires a Clang stdenv on 32-bit RISC-V: + # https://reviews.llvm.org/D43106#1019077 + broken = stdenv.hostPlatform.isRiscV32 && !stdenv.cc.isClang; }; } diff --git a/pkgs/development/compilers/llvm/16/default.nix b/pkgs/development/compilers/llvm/16/default.nix index 878806ff85aba..db9385043be26 100644 --- a/pkgs/development/compilers/llvm/16/default.nix +++ b/pkgs/development/compilers/llvm/16/default.nix @@ -226,6 +226,7 @@ in let (!stdenv.targetPlatform.isWasm && stdenv.targetPlatform.useLLVM or false) "-lunwind" ++ lib.optional stdenv.targetPlatform.isWasm "-fno-exceptions"; + nixSupport.cc-ldflags = lib.optionals (!stdenv.targetPlatform.isWasm) [ "-L${targetLlvmLibraries.libunwind}/lib" ]; }; clangNoLibcxx = wrapCCWith rec { diff --git a/pkgs/development/compilers/llvm/16/libcxx/default.nix b/pkgs/development/compilers/llvm/16/libcxx/default.nix index 78cd632024cda..d6c8c57c17437 100644 --- a/pkgs/development/compilers/llvm/16/libcxx/default.nix +++ b/pkgs/development/compilers/llvm/16/libcxx/default.nix @@ -1,5 +1,5 @@ { lib, stdenv, llvm_meta -, monorepoSrc, runCommand +, monorepoSrc, runCommand, fetchpatch , cmake, ninja, python3, fixDarwinDylibNames, version , cxxabi ? if stdenv.hostPlatform.isFreeBSD then libcxxrt else libcxxabi , libcxxabi, libcxxrt, libunwind @@ -47,6 +47,14 @@ stdenv.mkDerivation rec { patches = [ ./gnu-install-dirs.patch + # fix for https://github.com/NixOS/nixpkgs/issues/269548 + # https://github.com/llvm/llvm-project/pull/77218 + (fetchpatch { + name = "darwin-system-libcxxabi-link-flags.patch"; + url = "https://github.com/llvm/llvm-project/commit/c5b89b29ee6e3c444a355fd1cf733ce7ab2e316a.patch"; + hash = "sha256-LNoPg1KCoP8RWxU/AzHR52f4Dww24I9BGQJedMhFxyQ="; + relative = "libcxx"; + }) ]; postPatch = '' diff --git a/pkgs/development/compilers/llvm/16/llvm/default.nix b/pkgs/development/compilers/llvm/16/llvm/default.nix index a6faf9fd635d4..73fb6a7854131 100644 --- a/pkgs/development/compilers/llvm/16/llvm/default.nix +++ b/pkgs/development/compilers/llvm/16/llvm/default.nix @@ -331,7 +331,7 @@ in ] ++ optionals isDarwin [ "-DLLVM_ENABLE_LIBCXX=ON" "-DCAN_TARGET_i386=false" - ] ++ optionals (stdenv.hostPlatform != stdenv.buildPlatform) [ + ] ++ optionals ((stdenv.hostPlatform != stdenv.buildPlatform) && !(stdenv.buildPlatform.canExecute stdenv.hostPlatform)) [ "-DCMAKE_CROSSCOMPILING=True" "-DLLVM_TABLEGEN=${buildLlvmTools.llvm}/bin/llvm-tblgen" ( diff --git a/pkgs/development/compilers/llvm/17/compiler-rt/default.nix b/pkgs/development/compilers/llvm/17/compiler-rt/default.nix index 808df140e772d..0f15a9e12cde5 100644 --- a/pkgs/development/compilers/llvm/17/compiler-rt/default.nix +++ b/pkgs/development/compilers/llvm/17/compiler-rt/default.nix @@ -152,5 +152,8 @@ stdenv.mkDerivation { # "All of the code in the compiler-rt project is dual licensed under the MIT # license and the UIUC License (a BSD-like license)": license = with lib.licenses; [ mit ncsa ]; + # compiler-rt requires a Clang stdenv on 32-bit RISC-V: + # https://reviews.llvm.org/D43106#1019077 + broken = stdenv.hostPlatform.isRiscV32 && !stdenv.cc.isClang; }; } diff --git a/pkgs/development/compilers/llvm/17/libcxx/default.nix b/pkgs/development/compilers/llvm/17/libcxx/default.nix index 7b99966416638..8f4b0cec8d400 100644 --- a/pkgs/development/compilers/llvm/17/libcxx/default.nix +++ b/pkgs/development/compilers/llvm/17/libcxx/default.nix @@ -1,5 +1,5 @@ { lib, stdenv, llvm_meta -, monorepoSrc, runCommand +, monorepoSrc, runCommand, fetchpatch , cmake, ninja, python3, fixDarwinDylibNames, version , cxxabi ? if stdenv.hostPlatform.isFreeBSD then libcxxrt else libcxxabi , libcxxabi, libcxxrt, libunwind @@ -45,6 +45,25 @@ stdenv.mkDerivation rec { chmod -R u+w . ''; + patches = [ + # fix for https://github.com/NixOS/nixpkgs/issues/269548 + # https://github.com/llvm/llvm-project/pull/77218 + (fetchpatch { + name = "darwin-system-libcxxabi-link-flags.patch"; + url = "https://github.com/llvm/llvm-project/commit/c5b89b29ee6e3c444a355fd1cf733ce7ab2e316a.patch"; + hash = "sha256-LNoPg1KCoP8RWxU/AzHR52f4Dww24I9BGQJedMhFxyQ="; + relative = "libcxx"; + }) + ] ++ lib.optionals (stdenv.isDarwin && lib.versionOlder stdenv.hostPlatform.darwinMinVersion "10.13") [ + # https://github.com/llvm/llvm-project/issues/64226 + (fetchpatch { + name = "0042-mbstate_t-not-defined.patch"; + url = "https://github.com/macports/macports-ports/raw/acd8acb171f1658596ed1cf25da48d5b932e2d19/lang/llvm-17/files/0042-mbstate_t-not-defined.patch"; + relative = "libcxx"; + hash = "sha256-fVbX99W1gQrSaMFeBkzsJmNWNy0xVSw+oFvDe4AYXL0="; + }) + ]; + postPatch = '' cd ../runtimes ''; diff --git a/pkgs/development/compilers/llvm/17/libcxxabi/default.nix b/pkgs/development/compilers/llvm/17/libcxxabi/default.nix index 0a795da44ae41..30ca99b20fd7a 100644 --- a/pkgs/development/compilers/llvm/17/libcxxabi/default.nix +++ b/pkgs/development/compilers/llvm/17/libcxxabi/default.nix @@ -110,8 +110,5 @@ stdenv.mkDerivation rec { # the UIUC License (a BSD-like license)": license = with lib.licenses; [ mit ncsa ]; maintainers = llvm_meta.maintainers ++ [ lib.maintainers.vlstill ]; - # Broken until https://github.com/llvm/llvm-project/issues/64226 is resolved - # We should check if the version is not 10.13 but that is currently broken. - broken = stdenv.isDarwin && stdenv.isx86_64; }; } diff --git a/pkgs/development/compilers/llvm/17/llvm/default.nix b/pkgs/development/compilers/llvm/17/llvm/default.nix index b38fef333135e..627679ce812fc 100644 --- a/pkgs/development/compilers/llvm/17/llvm/default.nix +++ b/pkgs/development/compilers/llvm/17/llvm/default.nix @@ -330,7 +330,7 @@ stdenv.mkDerivation (rec { ] ++ optionals isDarwin [ "-DLLVM_ENABLE_LIBCXX=ON" "-DCAN_TARGET_i386=false" - ] ++ optionals (stdenv.hostPlatform != stdenv.buildPlatform) [ + ] ++ optionals ((stdenv.hostPlatform != stdenv.buildPlatform) && !(stdenv.buildPlatform.canExecute stdenv.hostPlatform)) [ "-DCMAKE_CROSSCOMPILING=True" "-DLLVM_TABLEGEN=${buildLlvmTools.llvm}/bin/llvm-tblgen" ( diff --git a/pkgs/development/compilers/llvm/8/clang/HIP-use-PATH-8.patch b/pkgs/development/compilers/llvm/8/clang/HIP-use-PATH-8.patch deleted file mode 100644 index f4be100d1ab9b..0000000000000 --- a/pkgs/development/compilers/llvm/8/clang/HIP-use-PATH-8.patch +++ /dev/null @@ -1,80 +0,0 @@ -From d9f1b7d7571b252e0ba2359ae6cfa93a9903c0e7 Mon Sep 17 00:00:00 2001 -From: =?UTF-8?q?Holger=20W=C3=BCnsche?= <holger.o.wuensche@t-online.de> -Date: Tue, 21 Jan 2020 19:49:44 +0100 -Subject: [PATCH] [HIP] use GetProgramPath for executable discovery - -This change replaces the manual building of executable paths -using llvm::sys::path::append with GetProgramPath. -This enables adding other paths in case executables reside -in different directories and makes the code easier to read. - -Differential Revision: https://reviews.llvm.org/D72903 ---- - clang/lib/Driver/ToolChains/HIP.cpp | 23 ++++++++--------------- - 1 file changed, 8 insertions(+), 15 deletions(-) - -diff --git a/lib/Driver/ToolChains/HIP.cpp b/lang/lib/Driver/ToolChains/HIP.cpp -index 868765cf88e..31f2d68ec6c 100644 ---- a/lib/Driver/ToolChains/HIP.cpp -+++ b/lib/Driver/ToolChains/HIP.cpp -@@ -104,9 +104,8 @@ const char *AMDGCN::Linker::constructLLVMLinkCommand( - const char *OutputFileName = - C.addTempFile(C.getArgs().MakeArgString(TmpName)); - CmdArgs.push_back(OutputFileName); -- SmallString<128> ExecPath(C.getDriver().Dir); -- llvm::sys::path::append(ExecPath, "llvm-link"); -- const char *Exec = Args.MakeArgString(ExecPath); -+ const char *Exec = -+ Args.MakeArgString(getToolChain().GetProgramPath("llvm-link")); - C.addCommand(llvm::make_unique<Command>(JA, *this, Exec, CmdArgs, Inputs)); - return OutputFileName; - } -@@ -147,9 +146,8 @@ const char *AMDGCN::Linker::constructOptCommand( - const char *OutputFileName = - C.addTempFile(C.getArgs().MakeArgString(TmpFileName)); - OptArgs.push_back(OutputFileName); -- SmallString<128> OptPath(C.getDriver().Dir); -- llvm::sys::path::append(OptPath, "opt"); -- const char *OptExec = Args.MakeArgString(OptPath); -+ const char *OptExec = -+ Args.MakeArgString(getToolChain().GetProgramPath("opt")); - C.addCommand(llvm::make_unique<Command>(JA, *this, OptExec, OptArgs, Inputs)); - return OutputFileName; - } -@@ -167,9 +165,7 @@ const char *AMDGCN::Linker::constructLlcCommand( - const char *LlcOutputFile = - C.addTempFile(C.getArgs().MakeArgString(LlcOutputFileName)); - LlcArgs.push_back(LlcOutputFile); -- SmallString<128> LlcPath(C.getDriver().Dir); -- llvm::sys::path::append(LlcPath, "llc"); -- const char *Llc = Args.MakeArgString(LlcPath); -+ const char *Llc = Args.MakeArgString(getToolChain().GetProgramPath("llc")); - C.addCommand(llvm::make_unique<Command>(JA, *this, Llc, LlcArgs, Inputs)); - return LlcOutputFile; - } -@@ -184,9 +180,7 @@ void AMDGCN::Linker::constructLldCommand(Compilation &C, const JobAction &JA, - ArgStringList LldArgs{"-flavor", "gnu", "--no-undefined", - "-shared", "-o", Output.getFilename(), - InputFileName}; -- SmallString<128> LldPath(C.getDriver().Dir); -- llvm::sys::path::append(LldPath, "lld"); -- const char *Lld = Args.MakeArgString(LldPath); -+ const char *Lld = Args.MakeArgString(getToolChain().GetProgramPath("lld")); - C.addCommand(llvm::make_unique<Command>(JA, *this, Lld, LldArgs, Inputs)); - } - -@@ -218,9 +212,8 @@ void AMDGCN::constructHIPFatbinCommand(Compilation &C, const JobAction &JA, - Args.MakeArgString(std::string("-outputs=").append(OutputFileName)); - BundlerArgs.push_back(BundlerOutputArg); - -- SmallString<128> BundlerPath(C.getDriver().Dir); -- llvm::sys::path::append(BundlerPath, "clang-offload-bundler"); -- const char *Bundler = Args.MakeArgString(BundlerPath); -+ const char *Bundler = Args.MakeArgString( -+ T.getToolChain().GetProgramPath("clang-offload-bundler")); - C.addCommand(llvm::make_unique<Command>(JA, T, Bundler, BundlerArgs, Inputs)); - } - --- -2.23.1 - diff --git a/pkgs/development/compilers/llvm/8/clang/compiler-rt-baremetal.patch b/pkgs/development/compilers/llvm/8/clang/compiler-rt-baremetal.patch deleted file mode 100644 index a4a0f21b0fcd6..0000000000000 --- a/pkgs/development/compilers/llvm/8/clang/compiler-rt-baremetal.patch +++ /dev/null @@ -1,53 +0,0 @@ -Index: lib/Driver/ToolChains/BareMetal.cpp -=================================================================== ---- a/lib/Driver/ToolChains/BareMetal.cpp -+++ b/lib/Driver/ToolChains/BareMetal.cpp -@@ -157,7 +157,7 @@ - void BareMetal::AddLinkRuntimeLib(const ArgList &Args, - ArgStringList &CmdArgs) const { - CmdArgs.push_back(Args.MakeArgString("-lclang_rt.builtins-" + -- getTriple().getArchName() + ".a")); -+ getTriple().getArchName())); - } - - void baremetal::Linker::ConstructJob(Compilation &C, const JobAction &JA, -Index: test/Driver/baremetal.cpp -=================================================================== ---- a/test/Driver/baremetal.cpp -+++ b/test/Driver/baremetal.cpp -@@ -13,7 +13,7 @@ - // CHECK-V6M-C-NEXT: "{{[^"]*}}ld{{(\.(lld|bfd|gold))?}}{{(\.exe)?}}" "{{.*}}.o" "-Bstatic" - // CHECK-V6M-C-SAME: "-L[[RESOURCE_DIR:[^"]+]]{{[/\\]+}}lib{{[/\\]+}}baremetal" - // CHECK-V6M-C-SAME: "-T" "semihosted.lds" "-Lsome{{[/\\]+}}directory{{[/\\]+}}user{{[/\\]+}}asked{{[/\\]+}}for" --// CHECK-V6M-C-SAME: "-lc" "-lm" "-lclang_rt.builtins-armv6m.a" -+// CHECK-V6M-C-SAME: "-lc" "-lm" "-lclang_rt.builtins-armv6m" - // CHECK-V6M-C-SAME: "-o" "{{.*}}.o" - - // RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ -@@ -35,7 +35,7 @@ - // CHECK-V6M-DEFAULTCXX: "{{[^"]*}}ld{{(\.(lld|bfd|gold))?}}{{(\.exe)?}}" "{{.*}}.o" "-Bstatic" - // CHECK-V6M-DEFAULTCXX-SAME: "-L{{[^"]*}}{{[/\\]+}}lib{{(64)?}}{{[/\\]+}}clang{{[/\\]+}}{{.*}}{{[/\\]+}}lib{{[/\\]+}}baremetal" - // CHECK-V6M-DEFAULTCXX-SAME: "-lc++" "-lc++abi" "-lunwind" --// CHECK-V6M-DEFAULTCXX-SAME: "-lc" "-lm" "-lclang_rt.builtins-armv6m.a" -+// CHECK-V6M-DEFAULTCXX-SAME: "-lc" "-lm" "-lclang_rt.builtins-armv6m" - // CHECK-V6M-DEFAULTCXX-SAME: "-o" "{{.*}}.o" - - // RUN: %clangxx -no-canonical-prefixes %s -### -o %t.o 2>&1 \ -@@ -48,7 +48,7 @@ - // CHECK-V6M-LIBCXX: "{{[^"]*}}ld{{(\.(lld|bfd|gold))?}}{{(\.exe)?}}" "{{.*}}.o" "-Bstatic" - // CHECK-V6M-LIBCXX-SAME: "-L{{[^"]*}}{{[/\\]+}}lib{{(64)?}}{{[/\\]+}}clang{{[/\\]+}}{{.*}}{{[/\\]+}}lib{{[/\\]+}}baremetal" - // CHECK-V6M-LIBCXX-SAME: "-lc++" "-lc++abi" "-lunwind" --// CHECK-V6M-LIBCXX-SAME: "-lc" "-lm" "-lclang_rt.builtins-armv6m.a" -+// CHECK-V6M-LIBCXX-SAME: "-lc" "-lm" "-lclang_rt.builtins-armv6m" - // CHECK-V6M-LIBCXX-SAME: "-o" "{{.*}}.o" - - // RUN: %clangxx -no-canonical-prefixes %s -### -o %t.o 2>&1 \ -@@ -61,7 +61,7 @@ - // CHECK-V6M-LIBSTDCXX: "{{[^"]*}}ld{{(\.(lld|bfd|gold))?}}{{(\.exe)?}}" "{{.*}}.o" "-Bstatic" - // CHECK-V6M-LIBSTDCXX-SAME: "-L{{[^"]*}}{{[/\\]+}}lib{{(64)?}}{{[/\\]+}}clang{{[/\\]+}}{{.*}}{{[/\\]+}}lib{{[/\\]+}}baremetal" - // CHECK-V6M-LIBSTDCXX-SAME: "-lstdc++" "-lsupc++" "-lunwind" --// CHECK-V6M-LIBSTDCXX-SAME: "-lc" "-lm" "-lclang_rt.builtins-armv6m.a" -+// CHECK-V6M-LIBSTDCXX-SAME: "-lc" "-lm" "-lclang_rt.builtins-armv6m" - // CHECK-V6M-LIBSTDCXX-SAME: "-o" "{{.*}}.o" - - // RUN: %clangxx -no-canonical-prefixes %s -### -o %t.o 2>&1 \ diff --git a/pkgs/development/compilers/llvm/8/clang/default.nix b/pkgs/development/compilers/llvm/8/clang/default.nix deleted file mode 100644 index 994f9bd967c41..0000000000000 --- a/pkgs/development/compilers/llvm/8/clang/default.nix +++ /dev/null @@ -1,145 +0,0 @@ -{ lib, stdenv, llvm_meta, fetch, substituteAll, cmake, libxml2, libllvm, version, clang-tools-extra_src, python3 -, buildLlvmTools -, fixDarwinDylibNames -, enableManpages ? false -, enablePolly ? false # TODO: get this info from llvm (passthru?) -}: - -let - self = stdenv.mkDerivation ({ - pname = "clang"; - inherit version; - - src = fetch "cfe" "0ihnbdl058gvl2wdy45p5am55bq8ifx8m9mhcsgj9ax8yxlzvvvh"; - - unpackPhase = '' - unpackFile $src - mv cfe-${version}* clang - sourceRoot=$PWD/clang - unpackFile ${clang-tools-extra_src} - mv clang-tools-extra-* $sourceRoot/tools/extra - ''; - - nativeBuildInputs = [ cmake python3 ] - ++ lib.optional enableManpages python3.pkgs.sphinx - ++ lib.optional stdenv.hostPlatform.isDarwin fixDarwinDylibNames; - - buildInputs = [ libxml2 libllvm ]; - - cmakeFlags = [ - "-DCMAKE_CXX_FLAGS=-std=c++11" - "-DCLANGD_BUILD_XPC=OFF" - "-DLLVM_ENABLE_RTTI=ON" - ] ++ lib.optionals enableManpages [ - "-DCLANG_INCLUDE_DOCS=ON" - "-DLLVM_ENABLE_SPHINX=ON" - "-DSPHINX_OUTPUT_MAN=ON" - "-DSPHINX_OUTPUT_HTML=OFF" - "-DSPHINX_WARNINGS_AS_ERRORS=OFF" - ] ++ lib.optionals (stdenv.hostPlatform != stdenv.buildPlatform) [ - "-DLLVM_TABLEGEN_EXE=${buildLlvmTools.llvm}/bin/llvm-tblgen" - "-DCLANG_TABLEGEN=${buildLlvmTools.libclang.dev}/bin/clang-tblgen" - ] ++ lib.optionals enablePolly [ - "-DWITH_POLLY=ON" - "-DLINK_POLLY_INTO_TOOLS=ON" - ]; - - patches = [ - ../../common/clang/5-8-purity.patch - ./xpc.patch - # Backport for -static-pie, which the latter touches, and which is nice in - # its own right. - ./static-pie.patch - # Backport for the `--unwindlib=[libgcc|compiler-rt]` flag, which is - # needed for our bootstrapping to not interfere with C. - ./unwindlib.patch - # https://reviews.llvm.org/D51899 - ./compiler-rt-baremetal.patch - # make clang -xhip use $PATH to find executables - ./HIP-use-PATH-8.patch - ./gnu-install-dirs.patch - (substituteAll { - src = ../../clang-6-10-LLVMgold-path.patch; - libllvmLibdir = "${libllvm.lib}/lib"; - }) - ]; - - postPatch = '' - sed -i -e 's/DriverArgs.hasArg(options::OPT_nostdlibinc)/true/' \ - -e 's/Args.hasArg(options::OPT_nostdlibinc)/true/' \ - lib/Driver/ToolChains/*.cpp - '' + lib.optionalString stdenv.hostPlatform.isMusl '' - sed -i -e 's/lgcc_s/lgcc_eh/' lib/Driver/ToolChains/*.cpp - '' + lib.optionalString stdenv.hostPlatform.isDarwin '' - substituteInPlace tools/extra/clangd/CMakeLists.txt \ - --replace "NOT HAVE_CXX_ATOMICS64_WITHOUT_LIB" FALSE - ''; - - outputs = [ "out" "lib" "dev" "python" ]; - - postInstall = '' - ln -sv $out/bin/clang $out/bin/cpp - - # Move libclang to 'lib' output - moveToOutput "lib/libclang.*" "$lib" - substituteInPlace $out/lib/cmake/clang/ClangTargets-release.cmake \ - --replace "\''${_IMPORT_PREFIX}/lib/libclang." "$lib/lib/libclang." - - mkdir -p $python/bin $python/share/{clang,scan-view} - mv $out/bin/{git-clang-format,scan-view} $python/bin - if [ -e $out/bin/set-xcode-analyzer ]; then - mv $out/bin/set-xcode-analyzer $python/bin - fi - mv $out/share/clang/*.py $python/share/clang - mv $out/share/scan-view/*.py $python/share/scan-view - rm $out/bin/c-index-test - patchShebangs $python/bin - - mkdir -p $dev/bin - cp bin/clang-tblgen $dev/bin - ''; - - passthru = { - inherit libllvm; - isClang = true; - hardeningUnsupportedFlags = [ "fortify3" ]; - }; - - meta = llvm_meta // { - homepage = "https://clang.llvm.org/"; - description = "A C language family frontend for LLVM"; - longDescription = '' - The Clang project provides a language front-end and tooling - infrastructure for languages in the C language family (C, C++, Objective - C/C++, OpenCL, CUDA, and RenderScript) for the LLVM project. - It aims to deliver amazingly fast compiles, extremely useful error and - warning messages and to provide a platform for building great source - level tools. The Clang Static Analyzer and clang-tidy are tools that - automatically find bugs in your code, and are great examples of the sort - of tools that can be built using the Clang frontend as a library to - parse C/C++ code. - ''; - mainProgram = "clang"; - }; - } // lib.optionalAttrs enableManpages { - pname = "clang-manpages"; - - buildPhase = '' - make docs-clang-man - ''; - - installPhase = '' - mkdir -p $out/share/man/man1 - # Manually install clang manpage - cp docs/man/*.1 $out/share/man/man1/ - ''; - - outputs = [ "out" ]; - - doCheck = false; - - meta = llvm_meta // { - description = "man page for Clang ${version}"; - }; - }); -in self diff --git a/pkgs/development/compilers/llvm/8/clang/gnu-install-dirs.patch b/pkgs/development/compilers/llvm/8/clang/gnu-install-dirs.patch deleted file mode 100644 index e4b9c3f8ddd6b..0000000000000 --- a/pkgs/development/compilers/llvm/8/clang/gnu-install-dirs.patch +++ /dev/null @@ -1,290 +0,0 @@ -diff --git a/CMakeLists.txt b/CMakeLists.txt -index c2016a45ca6b..9224797da0b5 100644 ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -9,6 +9,8 @@ endif() - if( CMAKE_SOURCE_DIR STREQUAL CMAKE_CURRENT_SOURCE_DIR ) - project(Clang) - -+ include(GNUInstallDirs) -+ - # Rely on llvm-config. - set(CONFIG_OUTPUT) - if(LLVM_CONFIG) -@@ -382,7 +384,7 @@ include_directories(BEFORE - - if (NOT LLVM_INSTALL_TOOLCHAIN_ONLY) - install(DIRECTORY include/clang include/clang-c -- DESTINATION include -+ DESTINATION ${CMAKE_INSTALL_INCLUDEDIR} - FILES_MATCHING - PATTERN "*.def" - PATTERN "*.h" -@@ -391,7 +393,7 @@ if (NOT LLVM_INSTALL_TOOLCHAIN_ONLY) - ) - - install(DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/include/clang -- DESTINATION include -+ DESTINATION ${CMAKE_INSTALL_INCLUDEDIR} - FILES_MATCHING - PATTERN "CMakeFiles" EXCLUDE - PATTERN "*.inc" -@@ -399,7 +401,7 @@ if (NOT LLVM_INSTALL_TOOLCHAIN_ONLY) - ) - - install(PROGRAMS utils/bash-autocomplete.sh -- DESTINATION share/clang -+ DESTINATION ${CMAKE_INSTALL_DATADIR}/clang - ) - endif() - -diff --git a/cmake/modules/AddClang.cmake b/cmake/modules/AddClang.cmake -index 7e22f16f365b..3c0c1d245969 100644 ---- a/cmake/modules/AddClang.cmake -+++ b/cmake/modules/AddClang.cmake -@@ -99,9 +99,9 @@ macro(add_clang_library name) - install(TARGETS ${name} - COMPONENT ${name} - ${export_to_clangtargets} -- LIBRARY DESTINATION lib${LLVM_LIBDIR_SUFFIX} -- ARCHIVE DESTINATION lib${LLVM_LIBDIR_SUFFIX} -- RUNTIME DESTINATION bin) -+ LIBRARY DESTINATION ${CMAKE_INSTALL_LIBDIR}${LLVM_LIBDIR_SUFFIX} -+ ARCHIVE DESTINATION ${CMAKE_INSTALL_LIBDIR}${LLVM_LIBDIR_SUFFIX} -+ RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) - - if (${ARG_SHARED} AND NOT CMAKE_CONFIGURATION_TYPES) - add_llvm_install_targets(install-${name} -@@ -142,7 +142,7 @@ macro(add_clang_tool name) - - install(TARGETS ${name} - ${export_to_clangtargets} -- RUNTIME DESTINATION bin -+ RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR} - COMPONENT ${name}) - - if(NOT CMAKE_CONFIGURATION_TYPES) -@@ -157,5 +157,5 @@ endmacro() - macro(add_clang_symlink name dest) - add_llvm_tool_symlink(${name} ${dest} ALWAYS_GENERATE) - # Always generate install targets -- llvm_install_symlink(${name} ${dest} ALWAYS_GENERATE) -+ llvm_install_symlink(${name} ${dest} ${CMAKE_INSTALL_FULL_BINDIR} ALWAYS_GENERATE) - endmacro() -diff --git a/lib/Headers/CMakeLists.txt b/lib/Headers/CMakeLists.txt -index e444c9c8706f..f8e4d06366a4 100644 ---- a/lib/Headers/CMakeLists.txt -+++ b/lib/Headers/CMakeLists.txt -@@ -164,19 +164,19 @@ install( - FILES ${files} ${CMAKE_CURRENT_BINARY_DIR}/arm_neon.h - COMPONENT clang-headers - PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ -- DESTINATION lib${LLVM_LIBDIR_SUFFIX}/clang/${CLANG_VERSION}/include) -+ DESTINATION ${CMAKE_INSTALL_LIBDIR}${LLVM_LIBDIR_SUFFIX}/clang/${CLANG_VERSION}/include) - - install( - FILES ${files} ${CMAKE_CURRENT_BINARY_DIR}/arm_fp16.h - COMPONENT clang-headers - PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ -- DESTINATION lib${LLVM_LIBDIR_SUFFIX}/clang/${CLANG_VERSION}/include) -+ DESTINATION ${CMAKE_INSTALL_LIBDIR}${LLVM_LIBDIR_SUFFIX}/clang/${CLANG_VERSION}/include) - - install( - FILES ${cuda_wrapper_files} - COMPONENT clang-headers - PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ -- DESTINATION lib${LLVM_LIBDIR_SUFFIX}/clang/${CLANG_VERSION}/include/cuda_wrappers) -+ DESTINATION ${CMAKE_INSTALL_LIBDIR}${LLVM_LIBDIR_SUFFIX}/clang/${CLANG_VERSION}/include/cuda_wrappers) - - if (NOT CMAKE_CONFIGURATION_TYPES) # don't add this for IDE's. - add_llvm_install_targets(install-clang-headers -diff --git a/tools/c-index-test/CMakeLists.txt b/tools/c-index-test/CMakeLists.txt -index 53e3421f1b35..79ae5bb4c399 100644 ---- a/tools/c-index-test/CMakeLists.txt -+++ b/tools/c-index-test/CMakeLists.txt -@@ -54,7 +54,7 @@ if (NOT LLVM_INSTALL_TOOLCHAIN_ONLY) - set_property(TARGET c-index-test APPEND PROPERTY INSTALL_RPATH - "@executable_path/../../lib") - else() -- set(INSTALL_DESTINATION bin) -+ set(INSTALL_DESTINATION ${CMAKE_INSTALL_BINDIR}) - endif() - - install(TARGETS c-index-test -diff --git a/tools/clang-check/CMakeLists.txt b/tools/clang-check/CMakeLists.txt -index b837b0a0a5d9..9e30bd5780a5 100644 ---- a/tools/clang-check/CMakeLists.txt -+++ b/tools/clang-check/CMakeLists.txt -@@ -21,4 +21,4 @@ target_link_libraries(clang-check - ) - - install(TARGETS clang-check -- RUNTIME DESTINATION bin) -+ RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) -diff --git a/tools/clang-extdef-mapping/CMakeLists.txt b/tools/clang-extdef-mapping/CMakeLists.txt -index 6c81689a831a..dacc14737719 100644 ---- a/tools/clang-extdef-mapping/CMakeLists.txt -+++ b/tools/clang-extdef-mapping/CMakeLists.txt -@@ -18,4 +18,4 @@ target_link_libraries(clang-extdef-mapping - ) - - install(TARGETS clang-extdef-mapping -- RUNTIME DESTINATION bin) -+ RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) -diff --git a/tools/clang-format/CMakeLists.txt b/tools/clang-format/CMakeLists.txt -index a295e8cd0b2a..1973ff82c7f6 100644 ---- a/tools/clang-format/CMakeLists.txt -+++ b/tools/clang-format/CMakeLists.txt -@@ -21,20 +21,20 @@ if( LLVM_LIB_FUZZING_ENGINE OR LLVM_USE_SANITIZE_COVERAGE ) - endif() - - install(PROGRAMS clang-format-bbedit.applescript -- DESTINATION share/clang -+ DESTINATION ${CMAKE_INSTALL_DATADIR}/clang - COMPONENT clang-format) - install(PROGRAMS clang-format-diff.py -- DESTINATION share/clang -+ DESTINATION ${CMAKE_INSTALL_DATADIR}/clang - COMPONENT clang-format) - install(PROGRAMS clang-format-sublime.py -- DESTINATION share/clang -+ DESTINATION ${CMAKE_INSTALL_DATADIR}/clang - COMPONENT clang-format) - install(PROGRAMS clang-format.el -- DESTINATION share/clang -+ DESTINATION ${CMAKE_INSTALL_DATADIR}/clang - COMPONENT clang-format) - install(PROGRAMS clang-format.py -- DESTINATION share/clang -+ DESTINATION ${CMAKE_INSTALL_DATADIR}/clang - COMPONENT clang-format) - install(PROGRAMS git-clang-format -- DESTINATION bin -+ DESTINATION ${CMAKE_INSTALL_BINDIR} - COMPONENT clang-format) -diff --git a/tools/clang-offload-bundler/CMakeLists.txt b/tools/clang-offload-bundler/CMakeLists.txt -index 8718015be76a..7a038f39622e 100644 ---- a/tools/clang-offload-bundler/CMakeLists.txt -+++ b/tools/clang-offload-bundler/CMakeLists.txt -@@ -22,4 +22,4 @@ target_link_libraries(clang-offload-bundler - ${CLANG_OFFLOAD_BUNDLER_LIB_DEPS} - ) - --install(TARGETS clang-offload-bundler RUNTIME DESTINATION bin) -+install(TARGETS clang-offload-bundler RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) -diff --git a/tools/clang-rename/CMakeLists.txt b/tools/clang-rename/CMakeLists.txt -index 45cbd763425c..f534e022024a 100644 ---- a/tools/clang-rename/CMakeLists.txt -+++ b/tools/clang-rename/CMakeLists.txt -@@ -19,8 +19,8 @@ target_link_libraries(clang-rename - ) - - install(PROGRAMS clang-rename.py -- DESTINATION share/clang -+ DESTINATION ${CMAKE_INSTALL_DATADIR}/clang - COMPONENT clang-rename) - install(PROGRAMS clang-rename.el -- DESTINATION share/clang -+ DESTINATION ${CMAKE_INSTALL_DATADIR}/clang - COMPONENT clang-rename) -diff --git a/tools/diagtool/CMakeLists.txt b/tools/diagtool/CMakeLists.txt -index 96d1c390249c..41c762b37b76 100644 ---- a/tools/diagtool/CMakeLists.txt -+++ b/tools/diagtool/CMakeLists.txt -@@ -21,7 +21,7 @@ target_link_libraries(diagtool - if (NOT LLVM_INSTALL_TOOLCHAIN_ONLY) - install(TARGETS diagtool - COMPONENT diagtool -- RUNTIME DESTINATION bin) -+ RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) - - if (NOT CMAKE_CONFIGURATION_TYPES) - add_llvm_install_targets(install-diagtool -diff --git a/tools/libclang/CMakeLists.txt b/tools/libclang/CMakeLists.txt -index 32333b011ad1..258dfb2d520c 100644 ---- a/tools/libclang/CMakeLists.txt -+++ b/tools/libclang/CMakeLists.txt -@@ -131,7 +131,7 @@ endif() - if(INTERNAL_INSTALL_PREFIX) - set(LIBCLANG_HEADERS_INSTALL_DESTINATION "${INTERNAL_INSTALL_PREFIX}/include") - else() -- set(LIBCLANG_HEADERS_INSTALL_DESTINATION include) -+ set(LIBCLANG_HEADERS_INSTALL_DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}) - endif() - - install(DIRECTORY ../../include/clang-c -@@ -162,7 +162,7 @@ foreach(PythonVersion ${CLANG_PYTHON_BINDINGS_VERSIONS}) - COMPONENT - libclang-python-bindings - DESTINATION -- "lib${LLVM_LIBDIR_SUFFIX}/python${PythonVersion}/site-packages") -+ "${CMAKE_INSTALL_LIBDIR}${LLVM_LIBDIR_SUFFIX}/python${PythonVersion}/site-packages") - endforeach() - if(NOT CMAKE_CONFIGURATION_TYPES) - add_custom_target(libclang-python-bindings) -diff --git a/tools/scan-build/CMakeLists.txt b/tools/scan-build/CMakeLists.txt -index 380379300b09..adfd58ed5f7d 100644 ---- a/tools/scan-build/CMakeLists.txt -+++ b/tools/scan-build/CMakeLists.txt -@@ -41,7 +41,7 @@ if(CLANG_INSTALL_SCANBUILD) - ${CMAKE_BINARY_DIR}/bin/ - DEPENDS ${CMAKE_CURRENT_SOURCE_DIR}/bin/${BinFile}) - list(APPEND Depends ${CMAKE_BINARY_DIR}/bin/${BinFile}) -- install(PROGRAMS bin/${BinFile} DESTINATION bin) -+ install(PROGRAMS bin/${BinFile} DESTINATION ${CMAKE_INSTALL_BINDIR}) - endforeach() - - foreach(LibexecFile ${LibexecFiles}) -@@ -53,7 +53,7 @@ if(CLANG_INSTALL_SCANBUILD) - ${CMAKE_BINARY_DIR}/libexec/ - DEPENDS ${CMAKE_CURRENT_SOURCE_DIR}/libexec/${LibexecFile}) - list(APPEND Depends ${CMAKE_BINARY_DIR}/libexec/${LibexecFile}) -- install(PROGRAMS libexec/${LibexecFile} DESTINATION libexec) -+ install(PROGRAMS libexec/${LibexecFile} DESTINATION ${CMAKE_INSTALL_LIBEXECDIR}) - endforeach() - - foreach(ManPage ${ManPages}) -@@ -77,7 +77,7 @@ if(CLANG_INSTALL_SCANBUILD) - ${CMAKE_BINARY_DIR}/share/scan-build/ - DEPENDS ${CMAKE_CURRENT_SOURCE_DIR}/share/scan-build/${ShareFile}) - list(APPEND Depends ${CMAKE_BINARY_DIR}/share/scan-build/${ShareFile}) -- install(FILES share/scan-build/${ShareFile} DESTINATION share/scan-build) -+ install(FILES share/scan-build/${ShareFile} DESTINATION ${CMAKE_INSTALL_DATADIR}/scan-build) - endforeach() - - add_custom_target(scan-build ALL DEPENDS ${Depends}) -diff --git a/tools/scan-view/CMakeLists.txt b/tools/scan-view/CMakeLists.txt -index b305ca562a72..554bcb379061 100644 ---- a/tools/scan-view/CMakeLists.txt -+++ b/tools/scan-view/CMakeLists.txt -@@ -21,7 +21,7 @@ if(CLANG_INSTALL_SCANVIEW) - ${CMAKE_BINARY_DIR}/bin/ - DEPENDS ${CMAKE_CURRENT_SOURCE_DIR}/bin/${BinFile}) - list(APPEND Depends ${CMAKE_BINARY_DIR}/bin/${BinFile}) -- install(PROGRAMS bin/${BinFile} DESTINATION bin) -+ install(PROGRAMS bin/${BinFile} DESTINATION ${CMAKE_INSTALL_BINDIR}) - endforeach() - - foreach(ShareFile ${ShareFiles}) -@@ -33,7 +33,7 @@ if(CLANG_INSTALL_SCANVIEW) - ${CMAKE_BINARY_DIR}/share/scan-view/ - DEPENDS ${CMAKE_CURRENT_SOURCE_DIR}/share/${ShareFile}) - list(APPEND Depends ${CMAKE_BINARY_DIR}/share/scan-view/${ShareFile}) -- install(FILES share/${ShareFile} DESTINATION share/scan-view) -+ install(FILES share/${ShareFile} DESTINATION ${CMAKE_INSTALL_DATADIR}/scan-view) - endforeach() - - add_custom_target(scan-view ALL DEPENDS ${Depends}) -diff --git a/utils/hmaptool/CMakeLists.txt b/utils/hmaptool/CMakeLists.txt -index 5573009d343a..24b3a90f233f 100644 ---- a/utils/hmaptool/CMakeLists.txt -+++ b/utils/hmaptool/CMakeLists.txt -@@ -9,7 +9,7 @@ add_custom_command(OUTPUT ${CMAKE_BINARY_DIR}/${CMAKE_CFG_INTDIR}/bin/${CLANG_HM - DEPENDS ${CMAKE_CURRENT_SOURCE_DIR}/${CLANG_HMAPTOOL}) - - list(APPEND Depends ${CMAKE_BINARY_DIR}/${CMAKE_CFG_INTDIR}/bin/${CLANG_HMAPTOOL}) --install(PROGRAMS ${CLANG_HMAPTOOL} DESTINATION bin) -+install(PROGRAMS ${CLANG_HMAPTOOL} DESTINATION ${CMAKE_INSTALL_BINDIR}) - - add_custom_target(hmaptool ALL DEPENDS ${Depends}) - set_target_properties(hmaptool PROPERTIES FOLDER "Utils") diff --git a/pkgs/development/compilers/llvm/8/clang/static-pie.patch b/pkgs/development/compilers/llvm/8/clang/static-pie.patch deleted file mode 100644 index d1f86a1623273..0000000000000 --- a/pkgs/development/compilers/llvm/8/clang/static-pie.patch +++ /dev/null @@ -1,157 +0,0 @@ -commit 7a9842bc92921e79b84630045276861be90b2d47 -Author: Siva Chandra <sivachandra@google.com> -Date: Wed Feb 20 19:07:04 2019 +0000 - - [Clang Driver] Add support for "-static-pie" argument to the Clang driver. - - Summary: This change mimics GCC's support for the "-static-pie" argument. - - Subscribers: cfe-commits - - Tags: #clang - - Differential Revision: https://reviews.llvm.org/D58307 - - git-svn-id: https://llvm.org/svn/llvm-project/cfe/trunk@354502 91177308-0d34-0410-b5e6-96231b3b80d8 - (cherry picked from commit 7d6cd7825e6883f8650e32b07f3750824c2cef62) - -diff --git a/include/clang/Driver/Options.td b/include/clang/Driver/Options.td -index d02d9744d7..75a21e66c7 100644 ---- a/include/clang/Driver/Options.td -+++ b/include/clang/Driver/Options.td -@@ -2502,6 +2502,7 @@ def pthread : Flag<["-"], "pthread">, Flags<[CC1Option]>, - def no_pthread : Flag<["-"], "no-pthread">, Flags<[CC1Option]>; - def p : Flag<["-"], "p">; - def pie : Flag<["-"], "pie">; -+def static_pie : Flag<["-"], "static-pie">; - def read__only__relocs : Separate<["-"], "read_only_relocs">; - def remap : Flag<["-"], "remap">; - def rewrite_objc : Flag<["-"], "rewrite-objc">, Flags<[DriverOption,CC1Option]>, -diff --git a/lib/Driver/ToolChains/CommonArgs.cpp b/lib/Driver/ToolChains/CommonArgs.cpp -index d7e316befa..85ffc1618d 100644 ---- a/lib/Driver/ToolChains/CommonArgs.cpp -+++ b/lib/Driver/ToolChains/CommonArgs.cpp -@@ -1138,19 +1138,22 @@ static void AddLibgcc(const llvm::Triple &Triple, const Driver &D, - bool isCygMing = Triple.isOSCygMing(); - bool IsIAMCU = Triple.isOSIAMCU(); - bool StaticLibgcc = Args.hasArg(options::OPT_static_libgcc) || -- Args.hasArg(options::OPT_static); -+ Args.hasArg(options::OPT_static) || -+ Args.hasArg(options::OPT_static_pie); - - bool SharedLibgcc = Args.hasArg(options::OPT_shared_libgcc); - bool UnspecifiedLibgcc = !StaticLibgcc && !SharedLibgcc; - - // Gcc adds libgcc arguments in various ways: - // -- // gcc <none>: -lgcc --as-needed -lgcc_s --no-as-needed -- // g++ <none>: -lgcc_s -lgcc -- // gcc shared: -lgcc_s -lgcc -- // g++ shared: -lgcc_s -lgcc -- // gcc static: -lgcc -lgcc_eh -- // g++ static: -lgcc -lgcc_eh -+ // gcc <none>: -lgcc --as-needed -lgcc_s --no-as-needed -+ // g++ <none>: -lgcc_s -lgcc -+ // gcc shared: -lgcc_s -lgcc -+ // g++ shared: -lgcc_s -lgcc -+ // gcc static: -lgcc -lgcc_eh -+ // g++ static: -lgcc -lgcc_eh -+ // gcc static-pie: -lgcc -lgcc_eh -+ // g++ static-pie: -lgcc -lgcc_eh - // - // Also, certain targets need additional adjustments. - -diff --git a/lib/Driver/ToolChains/Gnu.cpp b/lib/Driver/ToolChains/Gnu.cpp -index 69dba8fec8..0faa0bb473 100644 ---- a/lib/Driver/ToolChains/Gnu.cpp -+++ b/lib/Driver/ToolChains/Gnu.cpp -@@ -334,6 +334,7 @@ void tools::gnutools::Linker::ConstructJob(Compilation &C, const JobAction &JA, - const bool isAndroid = ToolChain.getTriple().isAndroid(); - const bool IsIAMCU = ToolChain.getTriple().isOSIAMCU(); - const bool IsPIE = getPIE(Args, ToolChain); -+ const bool IsStaticPIE = Args.hasArg(options::OPT_static_pie); - const bool HasCRTBeginEndFiles = - ToolChain.getTriple().hasEnvironment() || - (ToolChain.getTriple().getVendor() != llvm::Triple::MipsTechnologies); -@@ -354,6 +355,12 @@ void tools::gnutools::Linker::ConstructJob(Compilation &C, const JobAction &JA, - if (IsPIE) - CmdArgs.push_back("-pie"); - -+ if (IsStaticPIE) { -+ CmdArgs.push_back("-static"); -+ CmdArgs.push_back("-pie"); -+ CmdArgs.push_back("--no-dynamic-linker"); -+ } -+ - if (Args.hasArg(options::OPT_rdynamic)) - CmdArgs.push_back("-export-dynamic"); - -@@ -415,6 +422,8 @@ void tools::gnutools::Linker::ConstructJob(Compilation &C, const JobAction &JA, - crt1 = "gcrt1.o"; - else if (IsPIE) - crt1 = "Scrt1.o"; -+ else if (IsStaticPIE) -+ crt1 = "rcrt1.o"; - else - crt1 = "crt1.o"; - } -@@ -432,7 +441,7 @@ void tools::gnutools::Linker::ConstructJob(Compilation &C, const JobAction &JA, - crtbegin = isAndroid ? "crtbegin_static.o" : "crtbeginT.o"; - else if (Args.hasArg(options::OPT_shared)) - crtbegin = isAndroid ? "crtbegin_so.o" : "crtbeginS.o"; -- else if (IsPIE) -+ else if (IsPIE || IsStaticPIE) - crtbegin = isAndroid ? "crtbegin_dynamic.o" : "crtbeginS.o"; - else - crtbegin = isAndroid ? "crtbegin_dynamic.o" : "crtbegin.o"; -@@ -483,7 +492,7 @@ void tools::gnutools::Linker::ConstructJob(Compilation &C, const JobAction &JA, - - if (!Args.hasArg(options::OPT_nostdlib)) { - if (!Args.hasArg(options::OPT_nodefaultlibs)) { -- if (Args.hasArg(options::OPT_static)) -+ if (Args.hasArg(options::OPT_static) || IsStaticPIE) - CmdArgs.push_back("--start-group"); - - if (NeedsSanitizerDeps) -@@ -518,7 +527,7 @@ void tools::gnutools::Linker::ConstructJob(Compilation &C, const JobAction &JA, - if (IsIAMCU) - CmdArgs.push_back("-lgloss"); - -- if (Args.hasArg(options::OPT_static)) -+ if (Args.hasArg(options::OPT_static) || IsStaticPIE) - CmdArgs.push_back("--end-group"); - else - AddRunTimeLibs(ToolChain, D, CmdArgs, Args); -@@ -535,7 +544,7 @@ void tools::gnutools::Linker::ConstructJob(Compilation &C, const JobAction &JA, - const char *crtend; - if (Args.hasArg(options::OPT_shared)) - crtend = isAndroid ? "crtend_so.o" : "crtendS.o"; -- else if (IsPIE) -+ else if (IsPIE || IsStaticPIE) - crtend = isAndroid ? "crtend_android.o" : "crtendS.o"; - else - crtend = isAndroid ? "crtend_android.o" : "crtend.o"; -diff --git a/test/Driver/linux-ld.c b/test/Driver/linux-ld.c -index 3ab81be490..800f782523 100644 ---- a/test/Driver/linux-ld.c -+++ b/test/Driver/linux-ld.c -@@ -176,6 +176,19 @@ - // CHECK-CLANG-NO-LIBGCC-STATIC: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" - // CHECK-CLANG-NO-LIBGCC-STATIC: "--start-group" "-lgcc" "-lgcc_eh" "-lc" "--end-group" - // -+// RUN: %clang -static-pie -no-canonical-prefixes %s -### -o %t.o 2>&1 \ -+// RUN: --target=x86_64-unknown-linux -rtlib=platform \ -+// RUN: --gcc-toolchain="" \ -+// RUN: --sysroot=%S/Inputs/basic_linux_tree \ -+// RUN: | FileCheck --check-prefix=CHECK-CLANG-LD-STATIC-PIE %s -+// CHECK-CLANG-LD-STATIC-PIE: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" -+// CHECK-CLANG-LD-STATIC-PIE: "-static" -+// CHECK-CLANG-LD-STATIC-PIE: "-pie" -+// CHECK-CLANG-LD-STATIC-PIE: "--no-dynamic-linker" -+// CHECK-CLANG-LD-STATIC-PIE: "-m" "elf_x86_64" -+// CHECK-CLANG-LD-STATIC-PIE: "{{.*}}rcrt1.o" -+// CHECK-CLANG-LD-STATIC-PIE: "--start-group" "-lgcc" "-lgcc_eh" "-lc" "--end-group" -+// - // RUN: %clang -dynamic -no-canonical-prefixes %s -### -o %t.o 2>&1 \ - // RUN: --target=x86_64-unknown-linux -rtlib=platform \ - // RUN: --gcc-toolchain="" \ diff --git a/pkgs/development/compilers/llvm/8/clang/unwindlib.patch b/pkgs/development/compilers/llvm/8/clang/unwindlib.patch deleted file mode 100644 index 6958fce60cef0..0000000000000 --- a/pkgs/development/compilers/llvm/8/clang/unwindlib.patch +++ /dev/null @@ -1,372 +0,0 @@ -commit cd5603a4767277a29d3e67a9c3f2a5d2129cd973 -Author: Sterling Augustine <saugustine@google.com> -Date: Tue Mar 19 20:01:59 2019 +0000 - - Add --unwindlib=[libgcc|compiler-rt] to parallel --rtlib= [take 2] - - "clang++ hello.cc --rtlib=compiler-rt" - - now can works without specifying additional unwind or exception - handling libraries. - - This reworked version of the feature no longer modifies today's default - unwind library for compiler-rt: which is nothing. Rather, a user - can specify -DCLANG_DEFAULT_UNWINDLIB=libunwind when configuring - the compiler. - - This should address the issues from the previous version. - - Update tests for new --unwindlib semantics. - - Differential Revision: https://reviews.llvm.org/D59109 - - git-svn-id: https://llvm.org/svn/llvm-project/cfe/trunk@356508 91177308-0d34-0410-b5e6-96231b3b80d8 - (cherry picked from commit 344aa82a52f2fae527f58284567ae305a314f7a8) - -diff --git a/CMakeLists.txt b/CMakeLists.txt -index c2016a45ca..edeb2b66a1 100644 ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -261,6 +261,24 @@ if (NOT(CLANG_DEFAULT_RTLIB STREQUAL "" OR - "Default runtime library to use (\"libgcc\" or \"compiler-rt\", empty for platform default)" FORCE) - endif() - -+set(CLANG_DEFAULT_UNWINDLIB "" CACHE STRING -+ "Default unwind library to use (\"none\" \"libgcc\" or \"libunwind\", empty to match runtime library.)") -+if (CLANG_DEFAULT_UNWINDLIB STREQUAL "") -+ if (CLANG_DEFAULT_RTLIB STREQUAL "libgcc") -+ set (CLANG_DEFAULT_UNWINDLIB "libgcc" CACHE STRING "" FORCE) -+ elseif (CLANG_DEFAULT_RTLIBS STREQUAL "libunwind") -+ set (CLANG_DEFAULT_UNWINDLIB "none" CACHE STRING "" FORCE) -+ endif() -+endif() -+ -+if (NOT(CLANG_DEFAULT_UNWINDLIB STREQUAL "none" OR -+ CLANG_DEFAULT_UNWINDLIB STREQUAL "libgcc" OR -+ CLANG_DEFAULT_UNWINDLIB STREQUAL "libunwind")) -+ message(WARNING "Resetting default unwindlib to use platform default") -+ set(CLANG_DEFAULT_UNWINDLIB "" CACHE STRING -+ "Default unwind library to use (\"none\" \"libgcc\" or \"libunwind\", empty for none)" FORCE) -+endif() -+ - set(CLANG_DEFAULT_OBJCOPY "objcopy" CACHE STRING - "Default objcopy executable to use.") - -diff --git a/include/clang/Basic/DiagnosticDriverKinds.td b/include/clang/Basic/DiagnosticDriverKinds.td -index 5475e28ed7..15971210e4 100644 ---- a/include/clang/Basic/DiagnosticDriverKinds.td -+++ b/include/clang/Basic/DiagnosticDriverKinds.td -@@ -52,6 +52,10 @@ def err_drv_invalid_rtlib_name : Error< - "invalid runtime library name in argument '%0'">; - def err_drv_unsupported_rtlib_for_platform : Error< - "unsupported runtime library '%0' for platform '%1'">; -+def err_drv_invalid_unwindlib_name : Error< -+ "invalid unwind library name in argument '%0'">; -+def err_drv_incompatible_unwindlib : Error< -+ "--rtlib=libgcc requires --unwindlib=libgcc">; - def err_drv_invalid_stdlib_name : Error< - "invalid library name in argument '%0'">; - def err_drv_invalid_output_with_multiple_archs : Error< -diff --git a/include/clang/Config/config.h.cmake b/include/clang/Config/config.h.cmake -index 1d624450b9..2d4cb747e8 100644 ---- a/include/clang/Config/config.h.cmake -+++ b/include/clang/Config/config.h.cmake -@@ -23,6 +23,9 @@ - /* Default runtime library to use. */ - #define CLANG_DEFAULT_RTLIB "${CLANG_DEFAULT_RTLIB}" - -+/* Default unwind library to use. */ -+#define CLANG_DEFAULT_UNWINDLIB "${CLANG_DEFAULT_UNWINDLIB}" -+ - /* Default objcopy to use */ - #define CLANG_DEFAULT_OBJCOPY "${CLANG_DEFAULT_OBJCOPY}" - -diff --git a/include/clang/Driver/Options.td b/include/clang/Driver/Options.td -index 75a21e66c7..4da0e54965 100644 ---- a/include/clang/Driver/Options.td -+++ b/include/clang/Driver/Options.td -@@ -2570,6 +2570,8 @@ def std_EQ : Joined<["-", "--"], "std=">, Flags<[CC1Option]>, - }]>; - def stdlib_EQ : Joined<["-", "--"], "stdlib=">, Flags<[CC1Option]>, - HelpText<"C++ standard library to use">, Values<"libc++,libstdc++,platform">; -+def unwindlib_EQ : Joined<["-", "--"], "unwindlib=">, Flags<[CC1Option]>, -+ HelpText<"Unwind library to use">, Values<"libgcc,unwindlib,platform">; - def sub__library : JoinedOrSeparate<["-"], "sub_library">; - def sub__umbrella : JoinedOrSeparate<["-"], "sub_umbrella">; - def system_header_prefix : Joined<["--"], "system-header-prefix=">, -diff --git a/include/clang/Driver/ToolChain.h b/include/clang/Driver/ToolChain.h -index d5f75b8271..4bedf760eb 100644 ---- a/include/clang/Driver/ToolChain.h -+++ b/include/clang/Driver/ToolChain.h -@@ -100,6 +100,12 @@ public: - RLT_Libgcc - }; - -+ enum UnwindLibType { -+ UNW_None, -+ UNW_CompilerRT, -+ UNW_Libgcc -+ }; -+ - enum RTTIMode { - RM_Enabled, - RM_Disabled, -@@ -368,6 +374,10 @@ public: - return ToolChain::CST_Libstdcxx; - } - -+ virtual UnwindLibType GetDefaultUnwindLibType() const { -+ return ToolChain::UNW_None; -+ } -+ - virtual std::string getCompilerRTPath() const; - - virtual std::string getCompilerRT(const llvm::opt::ArgList &Args, -@@ -512,6 +522,10 @@ public: - // given compilation arguments. - virtual CXXStdlibType GetCXXStdlibType(const llvm::opt::ArgList &Args) const; - -+ // GetUnwindLibType - Determine the unwind library type to use with the -+ // given compilation arguments. -+ virtual UnwindLibType GetUnwindLibType(const llvm::opt::ArgList &Args) const; -+ - /// AddClangCXXStdlibIncludeArgs - Add the clang -cc1 level arguments to set - /// the include paths to use for the given C++ standard library type. - virtual void -diff --git a/lib/Driver/ToolChain.cpp b/lib/Driver/ToolChain.cpp -index 88a627eab6..d82423f4a8 100644 ---- a/lib/Driver/ToolChain.cpp -+++ b/lib/Driver/ToolChain.cpp -@@ -680,6 +680,33 @@ ToolChain::RuntimeLibType ToolChain::GetRuntimeLibType( - return GetDefaultRuntimeLibType(); - } - -+ToolChain::UnwindLibType ToolChain::GetUnwindLibType( -+ const ArgList &Args) const { -+ const Arg *A = Args.getLastArg(options::OPT_unwindlib_EQ); -+ StringRef LibName = A ? A->getValue() : CLANG_DEFAULT_UNWINDLIB; -+ -+ if (LibName == "none") -+ return ToolChain::UNW_None; -+ else if (LibName == "platform" || LibName == "") { -+ ToolChain::RuntimeLibType RtLibType = GetRuntimeLibType(Args); -+ if (RtLibType == ToolChain::RLT_CompilerRT) -+ return ToolChain::UNW_None; -+ else if (RtLibType == ToolChain::RLT_Libgcc) -+ return ToolChain::UNW_Libgcc; -+ } else if (LibName == "libunwind") { -+ if (GetRuntimeLibType(Args) == RLT_Libgcc) -+ getDriver().Diag(diag::err_drv_incompatible_unwindlib); -+ return ToolChain::UNW_CompilerRT; -+ } else if (LibName == "libgcc") -+ return ToolChain::UNW_Libgcc; -+ -+ if (A) -+ getDriver().Diag(diag::err_drv_invalid_unwindlib_name) -+ << A->getAsString(Args); -+ -+ return GetDefaultUnwindLibType(); -+} -+ - ToolChain::CXXStdlibType ToolChain::GetCXXStdlibType(const ArgList &Args) const{ - const Arg *A = Args.getLastArg(options::OPT_stdlib_EQ); - StringRef LibName = A ? A->getValue() : CLANG_DEFAULT_CXX_STDLIB; -diff --git a/lib/Driver/ToolChains/CommonArgs.cpp b/lib/Driver/ToolChains/CommonArgs.cpp -index 85ffc1618d..9fd29726a4 100644 ---- a/lib/Driver/ToolChains/CommonArgs.cpp -+++ b/lib/Driver/ToolChains/CommonArgs.cpp -@@ -1132,47 +1132,80 @@ bool tools::isObjCAutoRefCount(const ArgList &Args) { - return Args.hasFlag(options::OPT_fobjc_arc, options::OPT_fno_objc_arc, false); - } - --static void AddLibgcc(const llvm::Triple &Triple, const Driver &D, -- ArgStringList &CmdArgs, const ArgList &Args) { -- bool isAndroid = Triple.isAndroid(); -- bool isCygMing = Triple.isOSCygMing(); -- bool IsIAMCU = Triple.isOSIAMCU(); -- bool StaticLibgcc = Args.hasArg(options::OPT_static_libgcc) || -- Args.hasArg(options::OPT_static) || -- Args.hasArg(options::OPT_static_pie); -- -- bool SharedLibgcc = Args.hasArg(options::OPT_shared_libgcc); -- bool UnspecifiedLibgcc = !StaticLibgcc && !SharedLibgcc; -- -- // Gcc adds libgcc arguments in various ways: -- // -- // gcc <none>: -lgcc --as-needed -lgcc_s --no-as-needed -- // g++ <none>: -lgcc_s -lgcc -- // gcc shared: -lgcc_s -lgcc -- // g++ shared: -lgcc_s -lgcc -- // gcc static: -lgcc -lgcc_eh -- // g++ static: -lgcc -lgcc_eh -- // gcc static-pie: -lgcc -lgcc_eh -- // g++ static-pie: -lgcc -lgcc_eh -- // -- // Also, certain targets need additional adjustments. -+enum class LibGccType { UnspecifiedLibGcc, StaticLibGcc, SharedLibGcc }; -+ -+static LibGccType getLibGccType(const ArgList &Args) { -+ bool Static = Args.hasArg(options::OPT_static_libgcc) || -+ Args.hasArg(options::OPT_static) || -+ Args.hasArg(options::OPT_static_pie); -+ -+ bool Shared = Args.hasArg(options::OPT_shared_libgcc); -+ if (Shared) -+ return LibGccType::SharedLibGcc; -+ if (Static) -+ return LibGccType::StaticLibGcc; -+ return LibGccType::UnspecifiedLibGcc; -+} - -- bool LibGccFirst = (D.CCCIsCC() && UnspecifiedLibgcc) || StaticLibgcc; -- if (LibGccFirst) -- CmdArgs.push_back("-lgcc"); -+// Gcc adds libgcc arguments in various ways: -+// -+// gcc <none>: -lgcc --as-needed -lgcc_s --no-as-needed -+// g++ <none>: -lgcc_s -lgcc -+// gcc shared: -lgcc_s -lgcc -+// g++ shared: -lgcc_s -lgcc -+// gcc static: -lgcc -lgcc_eh -+// g++ static: -lgcc -lgcc_eh -+// gcc static-pie: -lgcc -lgcc_eh -+// g++ static-pie: -lgcc -lgcc_eh -+// -+// Also, certain targets need additional adjustments. -+ -+static void AddUnwindLibrary(const ToolChain &TC, const Driver &D, -+ ArgStringList &CmdArgs, const ArgList &Args) { -+ ToolChain::UnwindLibType UNW = TC.GetUnwindLibType(Args); -+ // Targets that don't use unwind libraries. -+ if (TC.getTriple().isAndroid() || TC.getTriple().isOSIAMCU() || -+ TC.getTriple().isOSBinFormatWasm() || -+ UNW == ToolChain::UNW_None) -+ return; - -- bool AsNeeded = D.CCCIsCC() && UnspecifiedLibgcc && !isAndroid && !isCygMing; -+ LibGccType LGT = getLibGccType(Args); -+ bool AsNeeded = D.CCCIsCC() && LGT == LibGccType::UnspecifiedLibGcc && -+ !TC.getTriple().isAndroid() && !TC.getTriple().isOSCygMing(); - if (AsNeeded) - CmdArgs.push_back("--as-needed"); - -- if ((UnspecifiedLibgcc || SharedLibgcc) && !isAndroid) -- CmdArgs.push_back("-lgcc_s"); -- -- else if (StaticLibgcc && !isAndroid && !IsIAMCU) -- CmdArgs.push_back("-lgcc_eh"); -+ switch (UNW) { -+ case ToolChain::UNW_None: -+ return; -+ case ToolChain::UNW_Libgcc: { -+ LibGccType LGT = getLibGccType(Args); -+ if (LGT == LibGccType::UnspecifiedLibGcc || LGT == LibGccType::SharedLibGcc) -+ CmdArgs.push_back("-lgcc_s"); -+ else if (LGT == LibGccType::StaticLibGcc) -+ CmdArgs.push_back("-lgcc_eh"); -+ break; -+ } -+ case ToolChain::UNW_CompilerRT: -+ CmdArgs.push_back("-lunwind"); -+ break; -+ } - - if (AsNeeded) - CmdArgs.push_back("--no-as-needed"); -+} -+ -+static void AddLibgcc(const ToolChain &TC, const Driver &D, -+ ArgStringList &CmdArgs, const ArgList &Args) { -+ bool isAndroid = TC.getTriple().isAndroid(); -+ -+ LibGccType LGT = getLibGccType(Args); -+ bool LibGccFirst = (D.CCCIsCC() && LGT == LibGccType::UnspecifiedLibGcc) || -+ LGT == LibGccType::StaticLibGcc; -+ if (LibGccFirst) -+ CmdArgs.push_back("-lgcc"); -+ -+ AddUnwindLibrary(TC, D, CmdArgs, Args); - - if (!LibGccFirst) - CmdArgs.push_back("-lgcc"); -@@ -1182,7 +1215,7 @@ static void AddLibgcc(const llvm::Triple &Triple, const Driver &D, - // - // NOTE: This fixes a link error on Android MIPS as well. The non-static - // libgcc for MIPS relies on _Unwind_Find_FDE and dl_iterate_phdr from libdl. -- if (isAndroid && !StaticLibgcc) -+ if (isAndroid && getLibGccType(Args) != LibGccType::StaticLibGcc) - CmdArgs.push_back("-ldl"); - } - -@@ -1194,6 +1227,7 @@ void tools::AddRunTimeLibs(const ToolChain &TC, const Driver &D, - switch (RLT) { - case ToolChain::RLT_CompilerRT: - CmdArgs.push_back(TC.getCompilerRTArgString(Args, "builtins")); -+ AddUnwindLibrary(TC, D, CmdArgs, Args); - break; - case ToolChain::RLT_Libgcc: - // Make sure libgcc is not used under MSVC environment by default -@@ -1205,7 +1239,7 @@ void tools::AddRunTimeLibs(const ToolChain &TC, const Driver &D, - << Args.getLastArg(options::OPT_rtlib_EQ)->getValue() << "MSVC"; - } - } else -- AddLibgcc(TC.getTriple(), D, CmdArgs, Args); -+ AddLibgcc(TC, D, CmdArgs, Args); - break; - } - } -diff --git a/test/Driver/compiler-rt-unwind.c b/test/Driver/compiler-rt-unwind.c -new file mode 100644 -index 0000000000..00024dfa7e ---- /dev/null -+++ b/test/Driver/compiler-rt-unwind.c -@@ -0,0 +1,49 @@ -+// General tests that the driver handles combinations of --rtlib=XXX and -+// --unwindlib=XXX properly. -+// -+// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ -+// RUN: --target=x86_64-unknown-linux \ -+// RUN: --gcc-toolchain="" \ -+// RUN: | FileCheck --check-prefix=RTLIB-EMPTY %s -+// RTLIB-EMPTY: "{{.*}}lgcc" -+// RTLIB-EMPTY: "{{.*}}-lgcc_s" -+// -+// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ -+// RUN: --target=x86_64-unknown-linux -rtlib=libgcc \ -+// RUN: --gcc-toolchain="" \ -+// RUN: | FileCheck --check-prefix=RTLIB-GCC %s -+// RTLIB-GCC: "{{.*}}lgcc" -+// RTLIB-GCC: "{{.*}}lgcc_s" -+// -+// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ -+// RUN: --target=x86_64-unknown-linux -rtlib=libgcc --unwindlib=libunwind \ -+// RUN: --gcc-toolchain="" \ -+// RUN: | FileCheck --check-prefix=RTLIB-GCC-UNWINDLIB-COMPILER-RT %s -+// RTLIB-GCC-UNWINDLIB-COMPILER-RT: "{{.*}}lgcc" -+// RTLIB-GCC-UNWINDLIB-COMPILER-RT: "{{.*}}lunwind" -+// -+// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ -+// RUN: --target=x86_64-unknown-linux -rtlib=compiler-rt \ -+// RUN: --gcc-toolchain="" \ -+// RUN: | FileCheck --check-prefix=RTLIB-COMPILER-RT %s -+// RTLIB-COMPILER-RT: "{{.*}}libclang_rt.builtins-x86_64.a" -+// -+// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ -+// RUN: --target=x86_64-unknown-linux -rtlib=compiler-rt --unwindlib=libgcc \ -+// RUN: --gcc-toolchain="" \ -+// RUN: | FileCheck --check-prefix=RTLIB-COMPILER-RT-UNWINDLIB-GCC %s -+// RTLIB-COMPILER-RT-UNWINDLIB-GCC: "{{.*}}libclang_rt.builtins-x86_64.a" -+// RTLIB-COMPILER-RT-UNWINDLIB-GCC: "{{.*}}lgcc_s" -+// -+// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ -+// RUN: --target=x86_64-unknown-linux -rtlib=compiler-rt --unwindlib=libgcc \ -+// RUN: -static --gcc-toolchain="" \ -+// RUN: | FileCheck --check-prefix=RTLIB-COMPILER-RT-UNWINDLIB-GCC-STATIC %s -+// RTLIB-COMPILER-RT-UNWINDLIB-GCC-STATIC: "{{.*}}libclang_rt.builtins-x86_64.a" -+// RTLIB-COMPILER-RT-UNWINDLIB-GCC-STATIC: "{{.*}}lgcc_eh" -+// -+// RUN: not %clang -no-canonical-prefixes %s -o %t.o 2> %t.err \ -+// RUN: --target=x86_64-unknown-linux -rtlib=libgcc --unwindlib=libunwind \ -+// RUN: --gcc-toolchain="" \ -+// RUN: FileCheck --input-file=%t.err --check-prefix=RTLIB-GCC-UNWINDLIB-COMPILER_RT %s -+// RTLIB-GCC-UNWINDLIB-COMPILER_RT: "{{[.|\\\n]*}}--rtlib=libgcc requires --unwindlib=libgcc" diff --git a/pkgs/development/compilers/llvm/8/clang/xpc.patch b/pkgs/development/compilers/llvm/8/clang/xpc.patch deleted file mode 100644 index eb57d34582281..0000000000000 --- a/pkgs/development/compilers/llvm/8/clang/xpc.patch +++ /dev/null @@ -1,41 +0,0 @@ -From 61c9b97d7b81cc2c013b423bf1763a92b14fcae3 Mon Sep 17 00:00:00 2001 -From: Jan Korous <jkorous@apple.com> -Date: Tue, 26 Mar 2019 03:48:25 +0000 -Subject: [PATCH] [clangd][xpc][cmake] Respect explicit value of - CLANGD_BUILD_XPC - -We shouldn't prevent user from disabling XPC framework build on Darwin. -However, by keeping it on by default our CI systems also test -it by default on macOS. - -Based on user request: -http://lists.llvm.org/pipermail/cfe-dev/2019-March/061778.html - -Differential Revision: https://reviews.llvm.org/D59808 - -git-svn-id: https://llvm.org/svn/llvm-project/clang-tools-extra/trunk@356974 91177308-0d34-0410-b5e6-96231b3b80d8 ---- - CMakeLists.txt | 13 ++++++++++--- - 1 file changed, 10 insertions(+), 3 deletions(-) - -diff --git a/CMakeLists.txt b/CMakeLists.txt -index 66ebeaeeaa..514b17fb3c 100644 ---- a/tools/extra/CMakeLists.txt -+++ b/tools/extra/CMakeLists.txt -@@ -1,6 +1,13 @@ --option(CLANGD_BUILD_XPC "Build XPC Support For Clangd." OFF) --if (${CMAKE_SYSTEM_NAME} MATCHES "Darwin") -- set(CLANGD_BUILD_XPC ON CACHE BOOL "" FORCE) -+if (NOT DEFINED CLANGD_BUILD_XPC) -+ if(${CMAKE_SYSTEM_NAME} MATCHES "Darwin") -+ set(CLANGD_BUILD_XPC_DEFAULT ON) -+ else () -+ set(CLANGD_BUILD_XPC_DEFAULT OFF) -+ endif () -+ -+ set(CLANGD_BUILD_XPC ${CLANGD_BUILD_XPC_DEFAULT} CACHE BOOL "Build XPC Support For Clangd." FORCE) -+ -+ unset(CLANGD_BUILD_XPC_DEFAULT) - endif () - - add_subdirectory(clang-apply-replacements) \ No newline at end of file diff --git a/pkgs/development/compilers/llvm/8/compiler-rt/armv7l.patch b/pkgs/development/compilers/llvm/8/compiler-rt/armv7l.patch deleted file mode 100644 index 89d7f1aec918c..0000000000000 --- a/pkgs/development/compilers/llvm/8/compiler-rt/armv7l.patch +++ /dev/null @@ -1,38 +0,0 @@ -diff -ur compiler-rt-7.1.0.src/cmake/builtin-config-ix.cmake compiler-rt-7.1.0.src-patched/cmake/builtin-config-ix.cmake ---- compiler-rt-7.1.0.src/cmake/builtin-config-ix.cmake 2018-05-25 06:36:27.000000000 +0900 -+++ compiler-rt-7.1.0.src-patched/cmake/builtin-config-ix.cmake 2020-05-09 20:26:33.030608692 +0900 -@@ -24,7 +24,7 @@ - - - set(ARM64 aarch64) --set(ARM32 arm armhf armv6m armv7m armv7em armv7 armv7s armv7k) -+set(ARM32 arm armhf armv6m armv7m armv7em armv7 armv7s armv7k armv7l) - set(HEXAGON hexagon) - set(X86 i386) - set(X86_64 x86_64) -diff -ur compiler-rt-7.1.0.src/lib/builtins/CMakeLists.txt compiler-rt-7.1.0.src-patched/lib/builtins/CMakeLists.txt ---- compiler-rt-7.1.0.src/lib/builtins/CMakeLists.txt 2018-07-31 03:18:59.000000000 +0900 -+++ compiler-rt-7.1.0.src-patched/lib/builtins/CMakeLists.txt 2020-05-09 20:27:38.893409318 +0900 -@@ -453,6 +453,7 @@ - set(armv7_SOURCES ${arm_SOURCES}) - set(armv7s_SOURCES ${arm_SOURCES}) - set(armv7k_SOURCES ${arm_SOURCES}) -+set(armv7l_SOURCES ${arm_SOURCES}) - set(arm64_SOURCES ${aarch64_SOURCES}) - - # macho_embedded archs -@@ -563,12 +564,12 @@ - set(_arch ${arch}) - if("${arch}" STREQUAL "armv6m") - set(_arch "arm|armv6m") -- elseif("${arch}" MATCHES "^(armhf|armv7|armv7s|armv7k|armv7m|armv7em)$") -+ elseif("${arch}" MATCHES "^(armhf|armv7|armv7s|armv7k|armv7l|armv7m|armv7em)$") - set(_arch "arm") - endif() - - # For ARM archs, exclude any VFP builtins if VFP is not supported -- if (${arch} MATCHES "^(arm|armhf|armv7|armv7s|armv7k|armv7m|armv7em)$") -+ if (${arch} MATCHES "^(arm|armhf|armv7|armv7s|armv7k|armv7l|armv7m|armv7em)$") - string(REPLACE ";" " " _TARGET_${arch}_CFLAGS "${TARGET_${arch}_CFLAGS}") - check_compile_definition(__VFP_FP__ "${CMAKE_C_FLAGS} ${_TARGET_${arch}_CFLAGS}" COMPILER_RT_HAS_${arch}_VFP) - if(NOT COMPILER_RT_HAS_${arch}_VFP) diff --git a/pkgs/development/compilers/llvm/8/compiler-rt/crtbegin-and-end.patch b/pkgs/development/compilers/llvm/8/compiler-rt/crtbegin-and-end.patch deleted file mode 100644 index e63be181f95cc..0000000000000 --- a/pkgs/development/compilers/llvm/8/compiler-rt/crtbegin-and-end.patch +++ /dev/null @@ -1,595 +0,0 @@ -Get crtbegin and crtend without compiler GCC! PR is at https://reviews.llvm.org/D28791 - -Index: compiler-rt/CMakeLists.txt -=================================================================== ---- compiler-rt/CMakeLists.txt -+++ compiler-rt/CMakeLists.txt -@@ -29,6 +29,8 @@ - - option(COMPILER_RT_BUILD_BUILTINS "Build builtins" ON) - mark_as_advanced(COMPILER_RT_BUILD_BUILTINS) -+option(COMPILER_RT_BUILD_CRT "Build crtbegin.o/crtend.o" ON) -+mark_as_advanced(COMPILER_RT_BUILD_CRT) - option(COMPILER_RT_BUILD_SANITIZERS "Build sanitizers" ON) - mark_as_advanced(COMPILER_RT_BUILD_SANITIZERS) - option(COMPILER_RT_BUILD_XRAY "Build xray" ON) -Index: compiler-rt/cmake/Modules/AddCompilerRT.cmake -=================================================================== ---- compiler-rt/cmake/Modules/AddCompilerRT.cmake -+++ compiler-rt/cmake/Modules/AddCompilerRT.cmake -@@ -132,7 +132,7 @@ - # Adds static or shared runtime for a list of architectures and operating - # systems and puts it in the proper directory in the build and install trees. - # add_compiler_rt_runtime(<name> --# {STATIC|SHARED} -+# {OBJECT|STATIC|SHARED} - # ARCHS <architectures> - # OS <os list> - # SOURCES <source files> -@@ -144,8 +144,8 @@ - # PARENT_TARGET <convenience parent target> - # ADDITIONAL_HEADERS <header files>) - function(add_compiler_rt_runtime name type) -- if(NOT type MATCHES "^(STATIC|SHARED)$") -- message(FATAL_ERROR "type argument must be STATIC or SHARED") -+ if(NOT type MATCHES "^(OBJECT|STATIC|SHARED)$") -+ message(FATAL_ERROR "type argument must be OBJECT, STATIC or SHARED") - return() - endif() - cmake_parse_arguments(LIB -@@ -204,7 +204,10 @@ - message(FATAL_ERROR "Architecture ${arch} can't be targeted") - return() - endif() -- if(type STREQUAL "STATIC") -+ if(type STREQUAL "OBJECT") -+ set(libname "${name}-${arch}") -+ set(output_name_${libname} ${libname}${COMPILER_RT_OS_SUFFIX}) -+ elseif(type STREQUAL "STATIC") - set(libname "${name}-${arch}") - set_output_name(output_name_${libname} ${name} ${arch}) - else() -@@ -270,12 +273,34 @@ - set(COMPONENT_OPTION COMPONENT ${libname}) - endif() - -- add_library(${libname} ${type} ${sources_${libname}}) -- set_target_compile_flags(${libname} ${extra_cflags_${libname}}) -- set_target_link_flags(${libname} ${extra_link_flags_${libname}}) -- set_property(TARGET ${libname} APPEND PROPERTY -- COMPILE_DEFINITIONS ${LIB_DEFS}) -- set_target_output_directories(${libname} ${output_dir_${libname}}) -+ if(type STREQUAL "OBJECT") -+ string(TOUPPER ${CMAKE_BUILD_TYPE} config) -+ get_property(cflags SOURCE ${sources_${libname}} PROPERTY COMPILE_FLAGS) -+ separate_arguments(cflags) -+ add_custom_command( -+ OUTPUT ${output_dir_${libname}}/${libname}.o -+ COMMAND ${CMAKE_C_COMPILER} ${sources_${libname}} ${cflags} ${extra_cflags_${libname}} -c -o ${output_dir_${libname}}/${libname}.o -+ DEPENDS ${sources_${libname}} -+ COMMENT "Building C object ${libname}.o") -+ add_custom_target(${libname} DEPENDS ${output_dir_${libname}}/${libname}.o) -+ install(FILES ${output_dir_${libname}}/${libname}.o -+ DESTINATION ${install_dir_${libname}} -+ ${COMPONENT_OPTION}) -+ else() -+ add_library(${libname} ${type} ${sources_${libname}}) -+ set_target_compile_flags(${libname} ${extra_cflags_${libname}}) -+ set_target_link_flags(${libname} ${extra_link_flags_${libname}}) -+ set_property(TARGET ${libname} APPEND PROPERTY -+ COMPILE_DEFINITIONS ${LIB_DEFS}) -+ set_target_output_directories(${libname} ${output_dir_${libname}}) -+ install(TARGETS ${libname} -+ ARCHIVE DESTINATION ${install_dir_${libname}} -+ ${COMPONENT_OPTION} -+ LIBRARY DESTINATION ${install_dir_${libname}} -+ ${COMPONENT_OPTION} -+ RUNTIME DESTINATION ${install_dir_${libname}} -+ ${COMPONENT_OPTION}) -+ endif() - set_target_properties(${libname} PROPERTIES - OUTPUT_NAME ${output_name_${libname}}) - set_target_properties(${libname} PROPERTIES FOLDER "Compiler-RT Runtime") -@@ -299,13 +324,6 @@ - ) - endif() - endif() -- install(TARGETS ${libname} -- ARCHIVE DESTINATION ${install_dir_${libname}} -- ${COMPONENT_OPTION} -- LIBRARY DESTINATION ${install_dir_${libname}} -- ${COMPONENT_OPTION} -- RUNTIME DESTINATION ${install_dir_${libname}} -- ${COMPONENT_OPTION}) - - # We only want to generate per-library install targets if you aren't using - # an IDE because the extra targets get cluttered in IDEs. -Index: compiler-rt/cmake/config-ix.cmake -=================================================================== ---- compiler-rt/cmake/config-ix.cmake -+++ compiler-rt/cmake/config-ix.cmake -@@ -227,6 +227,7 @@ - ${ARM32} ${ARM64} ${MIPS32} ${MIPS64} ${S390X}) - set(ALL_ASAN_SUPPORTED_ARCH ${X86} ${X86_64} ${ARM32} ${ARM64} - ${MIPS32} ${MIPS64} ${PPC64} ${S390X}) -+set(ALL_CRT_SUPPORTED_ARCH ${X86} ${X86_64} ${ARM32} ${ARM64}) - set(ALL_DFSAN_SUPPORTED_ARCH ${X86_64} ${MIPS64} ${ARM64}) - set(ALL_FUZZER_SUPPORTED_ARCH ${X86_64} ${ARM64}) - -@@ -474,6 +475,7 @@ - SANITIZER_COMMON_SUPPORTED_ARCH) - - else() -+ filter_available_targets(CRT_SUPPORTED_ARCH ${ALL_CRT_SUPPORTED_ARCH}) - # Architectures supported by compiler-rt libraries. - filter_available_targets(SANITIZER_COMMON_SUPPORTED_ARCH - ${ALL_SANITIZER_COMMON_SUPPORTED_ARCH}) -@@ -563,6 +565,12 @@ - - # TODO: Add builtins support. - -+if (CRT_SUPPORTED_ARCH AND OS_NAME MATCHES "Linux") -+ set(COMPILER_RT_HAS_CRT TRUE) -+else() -+ set(COMPILER_RT_HAS_CRT FALSE) -+endif() -+ - if (COMPILER_RT_HAS_SANITIZER_COMMON AND DFSAN_SUPPORTED_ARCH AND - OS_NAME MATCHES "Linux") - set(COMPILER_RT_HAS_DFSAN TRUE) -Index: compiler-rt/lib/CMakeLists.txt -=================================================================== ---- compiler-rt/lib/CMakeLists.txt -+++ compiler-rt/lib/CMakeLists.txt -@@ -17,6 +17,10 @@ - add_subdirectory(builtins) - endif() - -+if(COMPILER_RT_BUILD_CRT) -+ add_subdirectory(crt) -+endif() -+ - function(compiler_rt_build_runtime runtime) - string(TOUPPER ${runtime} runtime_uppercase) - if(COMPILER_RT_HAS_${runtime_uppercase}) -Index: compiler-rt/lib/crt/CMakeLists.txt -=================================================================== ---- /dev/null -+++ compiler-rt/lib/crt/CMakeLists.txt -@@ -0,0 +1,102 @@ -+add_compiler_rt_component(crt) -+ -+function(check_cxx_section_exists section output) -+ cmake_parse_arguments(ARG "" "" "SOURCE;FLAGS" ${ARGN}) -+ if(NOT ARG_SOURCE) -+ set(ARG_SOURCE "int main() { return 0; }\n") -+ endif() -+ -+ string(RANDOM TARGET_NAME) -+ set(TARGET_NAME "${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/cmTC_${TARGET_NAME}.dir") -+ file(MAKE_DIRECTORY ${TARGET_NAME}) -+ -+ file(WRITE "${TARGET_NAME}/CheckSectionExists.c" "${ARG_SOURCE}\n") -+ -+ string(REGEX MATCHALL "<[A-Za-z0-9_]*>" substitutions -+ ${CMAKE_C_COMPILE_OBJECT}) -+ -+ set(try_compile_flags "${ARG_FLAGS}") -+ if(CMAKE_C_COMPILER_ID MATCHES Clang AND CMAKE_C_COMPILER_TARGET) -+ list(APPEND try_compile_flags "-target ${CMAKE_C_COMPILER_TARGET}") -+ endif() -+ -+ string(REPLACE ";" " " extra_flags "${try_compile_flags}") -+ -+ set(test_compile_command "${CMAKE_C_COMPILE_OBJECT}") -+ foreach(substitution ${substitutions}) -+ if(substitution STREQUAL "<CMAKE_C_COMPILER>") -+ string(REPLACE "<CMAKE_C_COMPILER>" -+ "${CMAKE_C_COMPILER}" test_compile_command ${test_compile_command}) -+ elseif(substitution STREQUAL "<OBJECT>") -+ string(REPLACE "<OBJECT>" "${TARGET_NAME}/CheckSectionExists.o" -+ test_compile_command ${test_compile_command}) -+ elseif(substitution STREQUAL "<SOURCE>") -+ string(REPLACE "<SOURCE>" "${TARGET_NAME}/CheckSectionExists.c" -+ test_compile_command ${test_compile_command}) -+ elseif(substitution STREQUAL "<FLAGS>") -+ string(REPLACE "<FLAGS>" "${CMAKE_C_FLAGS} ${extra_flags}" -+ test_compile_command ${test_compile_command}) -+ else() -+ string(REPLACE "${substitution}" "" test_compile_command -+ ${test_compile_command}) -+ endif() -+ endforeach() -+ -+ string(REPLACE " " ";" test_compile_command "${test_compile_command}") -+ -+ execute_process( -+ COMMAND ${test_compile_command} -+ RESULT_VARIABLE TEST_RESULT -+ OUTPUT_VARIABLE TEST_OUTPUT -+ ERROR_VARIABLE TEST_ERROR -+ ) -+ -+ execute_process( -+ COMMAND ${CMAKE_OBJDUMP} -h "${TARGET_NAME}/CheckSectionExists.o" -+ RESULT_VARIABLE CHECK_RESULT -+ OUTPUT_VARIABLE CHECK_OUTPUT -+ ERROR_VARIABLE CHECK_ERROR -+ ) -+ string(FIND "${CHECK_OUTPUT}" "${section}" SECTION_FOUND) -+ -+ if(NOT SECTION_FOUND EQUAL -1) -+ set(${output} TRUE PARENT_SCOPE) -+ else() -+ set(${output} FALSE PARENT_SCOPE) -+ endif() -+ -+ file(REMOVE_RECURSE ${TARGET_NAME}) -+endfunction() -+ -+check_cxx_section_exists(".init_array" COMPILER_RT_HAS_INITFINI_ARRAY -+ SOURCE "__attribute__((constructor)) void f() {}\nint main() { return 0; }\n") -+ -+append_list_if(COMPILER_RT_HAS_INITFINI_ARRAY -DCRT_HAS_INITFINI_ARRAY CRT_CFLAGS) -+append_list_if(COMPILER_RT_HAS_FPIC_FLAG -fPIC CRT_CFLAGS) -+ -+foreach(arch ${CRT_SUPPORTED_ARCH}) -+ add_compiler_rt_runtime(clang_rt.crtbegin -+ OBJECT -+ ARCHS ${arch} -+ SOURCES ${CMAKE_CURRENT_SOURCE_DIR}/crtbegin.c -+ CFLAGS ${CRT_CFLAGS} -+ PARENT_TARGET crt) -+ add_compiler_rt_runtime(clang_rt.crtbegin_shared -+ OBJECT -+ ARCHS ${arch} -+ SOURCES ${CMAKE_CURRENT_SOURCE_DIR}/crtbegin.c -+ CFLAGS ${CRT_CFLAGS} -DCRT_SHARED -+ PARENT_TARGET crt) -+ add_compiler_rt_runtime(clang_rt.crtend -+ OBJECT -+ ARCHS ${arch} -+ SOURCES ${CMAKE_CURRENT_SOURCE_DIR}/crtend.c -+ CFLAGS ${CRT_CFLAGS} -+ PARENT_TARGET crt) -+ add_compiler_rt_runtime(clang_rt.crtend_shared -+ OBJECT -+ ARCHS ${arch} -+ SOURCES ${CMAKE_CURRENT_SOURCE_DIR}/crtend.c -+ CFLAGS ${CRT_CFLAGS} -DCRT_SHARED -+ PARENT_TARGET crt) -+endforeach() -Index: compiler-rt/lib/crt/crtbegin.c -=================================================================== ---- /dev/null -+++ compiler-rt/lib/crt/crtbegin.c -@@ -0,0 +1,108 @@ -+/* ===-- crtbegin.c - Start of constructors and destructors ----------------=== -+ * -+ * The LLVM Compiler Infrastructure -+ * -+ * This file is dual licensed under the MIT and the University of Illinois Open -+ * Source Licenses. See LICENSE.TXT for details. -+ * -+ * ===----------------------------------------------------------------------=== -+ */ -+ -+#include <stddef.h> -+ -+__attribute__((visibility("hidden"))) -+#ifdef CRT_SHARED -+void *__dso_handle = &__dso_handle; -+#else -+void *__dso_handle = (void *)0; -+#endif -+ -+static long __EH_FRAME_LIST__[] -+ __attribute__((section(".eh_frame"), aligned(sizeof(void *)))) = {}; -+ -+extern void __register_frame_info(const void *, void *) __attribute__((weak)); -+extern void *__deregister_frame_info(const void *) __attribute__((weak)); -+ -+#ifndef CRT_HAS_INITFINI_ARRAY -+typedef void (*fp)(void); -+ -+static fp __CTOR_LIST__[] -+ __attribute__((section(".ctors"), aligned(sizeof(fp)), used)) = {(fp)-1}; -+extern fp __CTOR_LIST_END__[]; -+#endif -+ -+#ifdef CRT_SHARED -+extern void __cxa_finalize(void *) __attribute__((weak)); -+#endif -+ -+static void __attribute__((used)) __do_init() { -+ static _Bool __initialized; -+ if (__builtin_expect(__initialized, 0)) -+ return; -+ __initialized = 1; -+ -+ static struct { void *p[8]; } __object; -+ if (__register_frame_info) -+ __register_frame_info(__EH_FRAME_LIST__, &__object); -+ -+#ifndef CRT_HAS_INITFINI_ARRAY -+ const size_t n = __CTOR_LIST_END__ - __CTOR_LIST__ - 1; -+ for (size_t i = n; i >= 1; i--) __CTOR_LIST__[i](); -+#endif -+} -+ -+#ifdef CRT_HAS_INITFINI_ARRAY -+__attribute__((section(".init_array"), -+ used)) static void (*__init)(void) = __do_init; -+#else // CRT_HAS_INITFINI_ARRAY -+#if defined(__i386__) || defined(__x86_64__) -+asm(".pushsection .init,\"ax\",@progbits\n\t" -+ "call " __USER_LABEL_PREFIX__ "__do_init\n\t" -+ ".popsection"); -+#elif defined(__arm__) -+asm(".pushsection .init,\"ax\",%progbits\n\t" -+ "bl " __USER_LABEL_PREFIX__ "__do_init\n\t" -+ ".popsection"); -+#endif // CRT_HAS_INITFINI_ARRAY -+#endif -+ -+#ifndef CRT_HAS_INITFINI_ARRAY -+static fp __DTOR_LIST__[] -+ __attribute__((section(".dtors"), aligned(sizeof(fp)), used)) = {(fp)-1}; -+extern fp __DTOR_LIST_END__[]; -+#endif -+ -+static void __attribute__((used)) __do_fini() { -+ static _Bool __finalized; -+ if (__builtin_expect(__finalized, 0)) -+ return; -+ __finalized = 1; -+ -+#ifdef CRT_SHARED -+ if (__cxa_finalize) -+ __cxa_finalize(__dso_handle); -+#endif -+ -+#ifndef CRT_HAS_INITFINI_ARRAY -+ if (__deregister_frame_info) -+ __deregister_frame_info(__EH_FRAME_LIST__); -+ -+ const size_t n = __DTOR_LIST_END__ - __DTOR_LIST__ - 1; -+ for (size_t i = 1; i < n; i++) __DTOR_LIST__[i](); -+#endif -+} -+ -+#ifdef CRT_HAS_INITFINI_ARRAY -+__attribute__((section(".fini_array"), -+ used)) static void (*__fini)(void) = __do_fini; -+#else // CRT_HAS_INITFINI_ARRAY -+#if defined(__i386__) || defined(__x86_64__) -+asm(".pushsection .fini,\"ax\",@progbits\n\t" -+ "call " __USER_LABEL_PREFIX__ "__do_fini\n\t" -+ ".popsection"); -+#elif defined(__arm__) -+asm(".pushsection .fini,\"ax\",%progbits\n\t" -+ "bl " __USER_LABEL_PREFIX__ "__do_fini\n\t" -+ ".popsection"); -+#endif -+#endif // CRT_HAS_INIT_FINI_ARRAY -Index: compiler-rt/lib/crt/crtend.c -=================================================================== ---- /dev/null -+++ compiler-rt/lib/crt/crtend.c -@@ -0,0 +1,24 @@ -+/* ===-- crtend.c - End of constructors and destructors --------------------=== -+ * -+ * The LLVM Compiler Infrastructure -+ * -+ * This file is dual licensed under the MIT and the University of Illinois Open -+ * Source Licenses. See LICENSE.TXT for details. -+ * -+ * ===----------------------------------------------------------------------=== -+ */ -+ -+#include <stdint.h> -+ -+// Put 4-byte zero which is the length field in FDE at the end as a terminator. -+const int32_t __EH_FRAME_LIST_END__[] -+ __attribute__((section(".eh_frame"), aligned(sizeof(int32_t)), -+ visibility("hidden"), used)) = {0}; -+ -+#ifndef CRT_HAS_INITFINI_ARRAY -+typedef void (*fp)(void); -+fp __CTOR_LIST_END__[] -+ __attribute__((section(".ctors"), visibility("hidden"), used)) = {0}; -+fp __DTOR_LIST_END__[] -+ __attribute__((section(".dtors"), visibility("hidden"), used)) = {0}; -+#endif -Index: compiler-rt/test/CMakeLists.txt -=================================================================== ---- compiler-rt/test/CMakeLists.txt -+++ compiler-rt/test/CMakeLists.txt -@@ -73,6 +73,9 @@ - if(COMPILER_RT_BUILD_XRAY) - compiler_rt_test_runtime(xray) - endif() -+ if(COMPILER_RT_HAS_CRT) -+ add_subdirectory(crt) -+ endif() - # ShadowCallStack does not yet provide a runtime with compiler-rt, the tests - # include their own minimal runtime - add_subdirectory(shadowcallstack) -Index: compiler-rt/test/crt/CMakeLists.txt -=================================================================== ---- /dev/null -+++ compiler-rt/test/crt/CMakeLists.txt -@@ -0,0 +1,31 @@ -+set(CRT_LIT_SOURCE_DIR ${CMAKE_CURRENT_SOURCE_DIR}) -+ -+set(CRT_TESTSUITES) -+ -+set(CRT_TEST_DEPS "") -+ -+if(NOT COMPILER_RT_STANDALONE_BUILD AND COMPILER_RT_BUILD_CRT AND -+ COMPILER_RT_HAS_CRT) -+ list(APPEND CRT_TEST_DEPS crt) -+endif() -+ -+set(CRT_TEST_ARCH ${CRT_SUPPORTED_ARCH}) -+if (COMPILER_RT_BUILD_CRT AND COMPILER_RT_HAS_CRT) -+ foreach(arch ${CRT_TEST_ARCH}) -+ set(CRT_TEST_TARGET_ARCH ${arch}) -+ string(TOLOWER "-${arch}-${OS_NAME}" CRT_TEST_CONFIG_SUFFIX) -+ get_test_cc_for_arch(${arch} CRT_TEST_TARGET_CC CRT_TEST_TARGET_CFLAGS) -+ string(TOUPPER ${arch} ARCH_UPPER_CASE) -+ set(CONFIG_NAME ${ARCH_UPPER_CASE}${OS_NAME}Config) -+ -+ configure_lit_site_cfg( -+ ${CMAKE_CURRENT_SOURCE_DIR}/lit.site.cfg.in -+ ${CMAKE_CURRENT_BINARY_DIR}/${CONFIG_NAME}/lit.site.cfg) -+ list(APPEND CRT_TESTSUITES ${CMAKE_CURRENT_BINARY_DIR}/${CONFIG_NAME}) -+ endforeach() -+endif() -+ -+add_lit_testsuite(check-crt "Running the CRT tests" -+ ${CRT_TESTSUITES} -+ DEPENDS ${CRT_TEST_DEPS}) -+set_target_properties(check-crt PROPERTIES FOLDER "Compiler-RT Misc") -Index: compiler-rt/test/crt/dso_handle.cpp -=================================================================== ---- /dev/null -+++ compiler-rt/test/crt/dso_handle.cpp -@@ -0,0 +1,33 @@ -+// RUN: %clangxx -g -DCRT_SHARED -c %s -fPIC -o %tshared.o -+// RUN: %clangxx -g -c %s -fPIC -o %t.o -+// RUN: %clangxx -g -shared -o %t.so -nostdlib %crti %shared_crtbegin %tshared.o %libstdcxx -lc -lm -lgcc_s %shared_crtend %crtn -+// RUN: %clangxx -g -o %t -nostdlib %crt1 %crti %crtbegin %t.o %libstdcxx -lc -lm %libgcc %t.so %crtend %crtn -+// RUN: %run %t 2>&1 | FileCheck %s -+ -+#include <stdio.h> -+ -+// CHECK: 1 -+// CHECK-NEXT: ~A() -+ -+#ifdef CRT_SHARED -+bool G; -+void C() { -+ printf("%d\n", G); -+} -+ -+struct A { -+ A() { G = true; } -+ ~A() { -+ printf("~A()\n"); -+ } -+}; -+ -+A a; -+#else -+void C(); -+ -+int main() { -+ C(); -+ return 0; -+} -+#endif -Index: compiler-rt/test/crt/lit.cfg -=================================================================== ---- /dev/null -+++ compiler-rt/test/crt/lit.cfg -@@ -0,0 +1,80 @@ -+# -*- Python -*- -+ -+import os -+import subprocess -+ -+# Setup config name. -+config.name = 'CRT' + config.name_suffix -+ -+# Setup source root. -+config.test_source_root = os.path.dirname(__file__) -+ -+ -+def get_library_path(file): -+ cmd = subprocess.Popen([config.clang.strip(), -+ config.target_cflags.strip(), -+ '-print-file-name=%s' % file], -+ stdout=subprocess.PIPE, -+ env=config.environment) -+ if not cmd.stdout: -+ lit_config.fatal("Couldn't find the library path for '%s'" % file) -+ dir = cmd.stdout.read().strip() -+ if sys.platform in ['win32'] and execute_external: -+ # Don't pass dosish path separator to msys bash.exe. -+ dir = dir.replace('\\', '/') -+ # Ensure the result is an ascii string, across Python2.5+ - Python3. -+ return str(dir.decode('ascii')) -+ -+ -+def get_libgcc_file_name(): -+ cmd = subprocess.Popen([config.clang.strip(), -+ config.target_cflags.strip(), -+ '-print-libgcc-file-name'], -+ stdout=subprocess.PIPE, -+ env=config.environment) -+ if not cmd.stdout: -+ lit_config.fatal("Couldn't find the library path for '%s'" % file) -+ dir = cmd.stdout.read().strip() -+ if sys.platform in ['win32'] and execute_external: -+ # Don't pass dosish path separator to msys bash.exe. -+ dir = dir.replace('\\', '/') -+ # Ensure the result is an ascii string, across Python2.5+ - Python3. -+ return str(dir.decode('ascii')) -+ -+ -+def build_invocation(compile_flags): -+ return ' ' + ' '.join([config.clang] + compile_flags) + ' ' -+ -+ -+# Setup substitutions. -+config.substitutions.append( -+ ('%clang ', build_invocation([config.target_cflags]))) -+config.substitutions.append( -+ ('%clangxx ', -+ build_invocation(config.cxx_mode_flags + [config.target_cflags]))) -+ -+base_lib = os.path.join( -+ config.compiler_rt_libdir, "clang_rt.%%s-%s.o" % config.target_arch) -+config.substitutions.append(('%crtbegin', base_lib % "crtbegin")) -+config.substitutions.append(('%shared_crtbegin', base_lib % "crtbegin_shared")) -+config.substitutions.append(('%crtend', base_lib % "crtend")) -+config.substitutions.append(('%shared_crtend', base_lib % "crtend_shared")) -+ -+config.substitutions.append( -+ ('%crt1', get_library_path('crt1.o'))) -+config.substitutions.append( -+ ('%crti', get_library_path('crti.o'))) -+config.substitutions.append( -+ ('%crtn', get_library_path('crtn.o'))) -+ -+config.substitutions.append( -+ ('%libgcc', get_libgcc_file_name())) -+ -+config.substitutions.append( -+ ('%libstdcxx', '-l' + config.sanitizer_cxx_lib.lstrip('lib'))) -+ -+# Default test suffixes. -+config.suffixes = ['.c', '.cc', '.cpp'] -+ -+if config.host_os not in ['Linux']: -+ config.unsupported = True -Index: compiler-rt/test/crt/lit.site.cfg.in -=================================================================== ---- /dev/null -+++ compiler-rt/test/crt/lit.site.cfg.in -@@ -0,0 +1,14 @@ -+@LIT_SITE_CFG_IN_HEADER@ -+ -+# Tool-specific config options. -+config.name_suffix = "@CRT_TEST_CONFIG_SUFFIX@" -+config.crt_lit_source_dir = "@CRT_LIT_SOURCE_DIR@" -+config.target_cflags = "@CRT_TEST_TARGET_CFLAGS@" -+config.target_arch = "@CRT_TEST_TARGET_ARCH@" -+config.sanitizer_cxx_lib = "@SANITIZER_TEST_CXX_LIBNAME@" -+ -+# Load common config for all compiler-rt lit tests -+lit_config.load_config(config, "@COMPILER_RT_BINARY_DIR@/test/lit.common.configured") -+ -+# Load tool-specific config that would do the real work. -+lit_config.load_config(config, "@CRT_LIT_SOURCE_DIR@/lit.cfg") diff --git a/pkgs/development/compilers/llvm/8/compiler-rt/default.nix b/pkgs/development/compilers/llvm/8/compiler-rt/default.nix deleted file mode 100644 index 26cb5aa306175..0000000000000 --- a/pkgs/development/compilers/llvm/8/compiler-rt/default.nix +++ /dev/null @@ -1,117 +0,0 @@ -{ lib, stdenv, llvm_meta, version, fetch, cmake, python3, libllvm, libcxxabi -, doFakeLibgcc ? stdenv.hostPlatform.isFreeBSD -}: - -let - - useLLVM = stdenv.hostPlatform.useLLVM or false; - bareMetal = stdenv.hostPlatform.parsed.kernel.name == "none"; - haveLibc = stdenv.cc.libc != null; - inherit (stdenv.hostPlatform) isMusl; - -in - -stdenv.mkDerivation { - pname = "compiler-rt" + lib.optionalString (haveLibc) "-libc"; - inherit version; - src = fetch "compiler-rt" "0dqqf8f930l8gag4d9qjgn1n0pj0nbv2anviqqhdi1rkhas8z0hi"; - - nativeBuildInputs = [ cmake python3 libllvm.dev ]; - buildInputs = lib.optional stdenv.hostPlatform.isDarwin libcxxabi; - - env.NIX_CFLAGS_COMPILE = toString [ - "-DSCUDO_DEFAULT_OPTIONS=DeleteSizeMismatch=0:DeallocationTypeMismatch=0" - ]; - - cmakeFlags = [ - "-DCOMPILER_RT_DEFAULT_TARGET_ONLY=ON" - "-DCMAKE_C_COMPILER_TARGET=${stdenv.hostPlatform.config}" - "-DCMAKE_ASM_COMPILER_TARGET=${stdenv.hostPlatform.config}" - ] ++ lib.optionals (useLLVM || bareMetal || isMusl) [ - "-DCOMPILER_RT_BUILD_SANITIZERS=OFF" - "-DCOMPILER_RT_BUILD_XRAY=OFF" - "-DCOMPILER_RT_BUILD_LIBFUZZER=OFF" - ] ++ lib.optionals (useLLVM || bareMetal) [ - "-DCOMPILER_RT_BUILD_PROFILE=OFF" - ] ++ lib.optionals ((useLLVM || bareMetal) && !haveLibc) [ - "-DCMAKE_C_COMPILER_WORKS=ON" - "-DCMAKE_CXX_COMPILER_WORKS=ON" - "-DCOMPILER_RT_BAREMETAL_BUILD=ON" - "-DCMAKE_SIZEOF_VOID_P=${toString (stdenv.hostPlatform.parsed.cpu.bits / 8)}" - ] ++ lib.optionals (useLLVM) [ - "-DCOMPILER_RT_BUILD_BUILTINS=ON" - #https://stackoverflow.com/questions/53633705/cmake-the-c-compiler-is-not-able-to-compile-a-simple-test-program - "-DCMAKE_TRY_COMPILE_TARGET_TYPE=STATIC_LIBRARY" - ] ++ lib.optionals (bareMetal) [ - "-DCOMPILER_RT_OS_DIR=baremetal" - ] ++ lib.optionals (stdenv.hostPlatform.isDarwin) [ - # The compiler-rt build infrastructure sniffs supported platforms on Darwin - # and finds i386;x86_64;x86_64h. We only build for x86_64, so linking fails - # when it tries to use libc++ and libc++api for i386. - "-DDARWIN_osx_ARCHS=${stdenv.hostPlatform.darwinArch}" - ]; - - outputs = [ "out" "dev" ]; - - patches = [ - # https://github.com/llvm/llvm-project/commit/947f9692440836dcb8d88b74b69dd379d85974ce - ../../common/compiler-rt/glibc.patch - ../../common/compiler-rt/7-12-codesign.patch # Revert compiler-rt commit that makes codesign mandatory - ./gnu-install-dirs.patch - ../../common/compiler-rt/libsanitizer-no-cyclades-9.patch - ] ++ lib.optional (useLLVM) ./crtbegin-and-end.patch - ++ lib.optional stdenv.hostPlatform.isAarch32 ./armv7l.patch; - - # TSAN requires XPC on Darwin, which we have no public/free source files for. We can depend on the Apple frameworks - # to get it, but they're unfree. Since LLVM is rather central to the stdenv, we patch out TSAN support so that Hydra - # can build this. If we didn't do it, basically the entire nixpkgs on Darwin would have an unfree dependency and we'd - # get no binary cache for the entire platform. If you really find yourself wanting the TSAN, make this controllable by - # a flag and turn the flag off during the stdenv build. - postPatch = lib.optionalString (!stdenv.isDarwin) '' - substituteInPlace cmake/builtin-config-ix.cmake \ - --replace 'set(X86 i386)' 'set(X86 i386 i486 i586 i686)' - '' + lib.optionalString stdenv.isDarwin '' - substituteInPlace cmake/config-ix.cmake \ - --replace 'set(COMPILER_RT_HAS_TSAN TRUE)' 'set(COMPILER_RT_HAS_TSAN FALSE)' - '' + lib.optionalString (useLLVM) '' - substituteInPlace lib/builtins/int_util.c \ - --replace "#include <stdlib.h>" "" - substituteInPlace lib/builtins/clear_cache.c \ - --replace "#include <assert.h>" "" - substituteInPlace lib/builtins/cpu_model.c \ - --replace "#include <assert.h>" "" - ''; - - preConfigure = lib.optionalString (useLLVM && !haveLibc) '' - cmakeFlagsArray+=(-DCMAKE_C_FLAGS="-nodefaultlibs -ffreestanding") - ''; - - # Hack around weird upsream RPATH bug - postInstall = lib.optionalString (stdenv.hostPlatform.isDarwin || stdenv.hostPlatform.isWasm) '' - ln -s "$out/lib"/*/* "$out/lib" - '' + lib.optionalString (useLLVM) '' - ln -s $out/lib/*/clang_rt.crtbegin-*.o $out/lib/crtbegin.o - ln -s $out/lib/*/clang_rt.crtend-*.o $out/lib/crtend.o - ln -s $out/lib/*/clang_rt.crtbegin_shared-*.o $out/lib/crtbeginS.o - ln -s $out/lib/*/clang_rt.crtend_shared-*.o $out/lib/crtendS.o - '' + lib.optionalString doFakeLibgcc '' - ln -s $out/lib/freebsd/libclang_rt.builtins-*.a $out/lib/libgcc.a - ''; - - meta = llvm_meta // { - homepage = "https://compiler-rt.llvm.org/"; - description = "Compiler runtime libraries"; - longDescription = '' - The compiler-rt project provides highly tuned implementations of the - low-level code generator support routines like "__fixunsdfdi" and other - calls generated when a target doesn't have a short sequence of native - instructions to implement a core IR operation. It also provides - implementations of run-time libraries for dynamic testing tools such as - AddressSanitizer, ThreadSanitizer, MemorySanitizer, and DataFlowSanitizer. - ''; - # "All of the code in the compiler-rt project is dual licensed under the MIT - # license and the UIUC License (a BSD-like license)": - license = with lib.licenses; [ mit ncsa ]; - broken = stdenv.hostPlatform.isDarwin && stdenv.hostPlatform.isAarch64; - }; -} diff --git a/pkgs/development/compilers/llvm/8/compiler-rt/gnu-install-dirs.patch b/pkgs/development/compilers/llvm/8/compiler-rt/gnu-install-dirs.patch deleted file mode 100644 index a25fa90f98006..0000000000000 --- a/pkgs/development/compilers/llvm/8/compiler-rt/gnu-install-dirs.patch +++ /dev/null @@ -1,117 +0,0 @@ -diff --git a/CMakeLists.txt b/CMakeLists.txt -index aa360a3ef36e..a39676148181 100644 ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -8,6 +8,7 @@ cmake_minimum_required(VERSION 3.4.3) - # Check if compiler-rt is built as a standalone project. - if (CMAKE_SOURCE_DIR STREQUAL CMAKE_CURRENT_SOURCE_DIR OR COMPILER_RT_STANDALONE_BUILD) - project(CompilerRT C CXX ASM) -+ include(GNUInstallDirs) - set(COMPILER_RT_STANDALONE_BUILD TRUE) - set_property(GLOBAL PROPERTY USE_FOLDERS ON) - endif() -diff --git a/cmake/Modules/AddCompilerRT.cmake b/cmake/Modules/AddCompilerRT.cmake -index 81b110203c27..df7598a11caf 100644 ---- a/cmake/Modules/AddCompilerRT.cmake -+++ b/cmake/Modules/AddCompilerRT.cmake -@@ -479,7 +479,7 @@ macro(add_compiler_rt_resource_file target_name file_name component) - add_custom_target(${target_name} DEPENDS ${dst_file}) - # Install in Clang resource directory. - install(FILES ${file_name} -- DESTINATION ${COMPILER_RT_INSTALL_PATH}/share -+ DESTINATION ${COMPILER_RT_INSTALL_PATH}/${CMAKE_INSTALL_FULL_DATADIR} - COMPONENT ${component}) - add_dependencies(${component} ${target_name}) - -@@ -496,7 +496,7 @@ macro(add_compiler_rt_script name) - add_custom_target(${name} DEPENDS ${dst}) - install(FILES ${dst} - PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE -- DESTINATION ${COMPILER_RT_INSTALL_PATH}/bin) -+ DESTINATION ${COMPILER_RT_INSTALL_PATH}/${CMAKE_INSTALL_FULL_BINDIR}) - endmacro(add_compiler_rt_script src name) - - # Builds custom version of libc++ and installs it in <prefix>. -diff --git a/cmake/Modules/CompilerRTDarwinUtils.cmake b/cmake/Modules/CompilerRTDarwinUtils.cmake -index 04cc955980fa..a99f6dfb2f82 100644 ---- a/cmake/Modules/CompilerRTDarwinUtils.cmake -+++ b/cmake/Modules/CompilerRTDarwinUtils.cmake -@@ -377,7 +377,7 @@ macro(darwin_add_embedded_builtin_libraries) - set(DARWIN_macho_embedded_LIBRARY_OUTPUT_DIR - ${COMPILER_RT_OUTPUT_DIR}/lib/macho_embedded) - set(DARWIN_macho_embedded_LIBRARY_INSTALL_DIR -- ${COMPILER_RT_INSTALL_PATH}/lib/macho_embedded) -+ ${COMPILER_RT_INSTALL_PATH}/${CMAKE_INSTALL_FULL_LIBDIR}/macho_embedded) - - set(CFLAGS_armv7 "-target thumbv7-apple-darwin-eabi") - set(CFLAGS_i386 "-march=pentium") -diff --git a/cmake/Modules/CompilerRTUtils.cmake b/cmake/Modules/CompilerRTUtils.cmake -index 5348f2064b67..d7b8fe190789 100644 ---- a/cmake/Modules/CompilerRTUtils.cmake -+++ b/cmake/Modules/CompilerRTUtils.cmake -@@ -363,7 +363,7 @@ endfunction() - function(get_compiler_rt_install_dir arch install_dir) - if(LLVM_ENABLE_PER_TARGET_RUNTIME_DIR AND NOT APPLE) - get_compiler_rt_target(${arch} target) -- set(${install_dir} ${COMPILER_RT_INSTALL_PATH}/${target}/lib PARENT_SCOPE) -+ set(${install_dir} ${COMPILER_RT_INSTALL_PATH}/${target}/${CMAKE_INSTALL_FULL_LIBDIR} PARENT_SCOPE) - else() - set(${install_dir} ${COMPILER_RT_LIBRARY_INSTALL_DIR} PARENT_SCOPE) - endif() -diff --git a/cmake/base-config-ix.cmake b/cmake/base-config-ix.cmake -index aeabf17653f5..0a927fbfc750 100644 ---- a/cmake/base-config-ix.cmake -+++ b/cmake/base-config-ix.cmake -@@ -59,11 +59,11 @@ if (LLVM_TREE_AVAILABLE) - else() - # Take output dir and install path from the user. - set(COMPILER_RT_OUTPUT_DIR ${CMAKE_CURRENT_BINARY_DIR} CACHE PATH -- "Path where built compiler-rt libraries should be stored.") -+ "Path where built compiler-rt build artifacts should be stored.") - set(COMPILER_RT_EXEC_OUTPUT_DIR ${CMAKE_CURRENT_BINARY_DIR}/bin CACHE PATH - "Path where built compiler-rt executables should be stored.") -- set(COMPILER_RT_INSTALL_PATH ${CMAKE_INSTALL_PREFIX} CACHE PATH -- "Path where built compiler-rt libraries should be installed.") -+ set(COMPILER_RT_INSTALL_PATH "" CACHE PATH -+ "Prefix where built compiler-rt artifacts should be installed, comes before CMAKE_INSTALL_PREFIX.") - option(COMPILER_RT_INCLUDE_TESTS "Generate and build compiler-rt unit tests." OFF) - option(COMPILER_RT_ENABLE_WERROR "Fail and stop if warning is triggered" OFF) - # Use a host compiler to compile/link tests. -@@ -91,7 +91,7 @@ else(LLVM_ENABLE_PER_TARGET_RUNTIME_DIR) - set(COMPILER_RT_LIBRARY_OUTPUT_DIR - ${COMPILER_RT_OUTPUT_DIR}/lib/${COMPILER_RT_OS_DIR}) - set(COMPILER_RT_LIBRARY_INSTALL_DIR -- ${COMPILER_RT_INSTALL_PATH}/lib/${COMPILER_RT_OS_DIR}) -+ ${COMPILER_RT_INSTALL_PATH}/${CMAKE_INSTALL_FULL_LIBDIR}/${COMPILER_RT_OS_DIR}) - endif() - - if(APPLE) -diff --git a/include/CMakeLists.txt b/include/CMakeLists.txt -index c4b93b89a30c..3913dc3a1ee6 100644 ---- a/include/CMakeLists.txt -+++ b/include/CMakeLists.txt -@@ -48,12 +48,12 @@ set_target_properties(compiler-rt-headers PROPERTIES FOLDER "Compiler-RT Misc") - install(FILES ${SANITIZER_HEADERS} - COMPONENT compiler-rt-headers - PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ -- DESTINATION ${COMPILER_RT_INSTALL_PATH}/include/sanitizer) -+ DESTINATION ${COMPILER_RT_INSTALL_PATH}/${CMAKE_INSTALL_FULL_INCLUDEDIR}/sanitizer) - # Install xray headers. - install(FILES ${XRAY_HEADERS} - COMPONENT compiler-rt-headers - PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ -- DESTINATION ${COMPILER_RT_INSTALL_PATH}/include/xray) -+ DESTINATION ${COMPILER_RT_INSTALL_PATH}/${CMAKE_INSTALL_FULL_INCLUDEDIR}/xray) - - if (NOT CMAKE_CONFIGURATION_TYPES) # don't add this for IDEs. - add_custom_target(install-compiler-rt-headers -diff --git a/lib/dfsan/CMakeLists.txt b/lib/dfsan/CMakeLists.txt -index b3ae713cf02c..52b364b900f5 100644 ---- a/lib/dfsan/CMakeLists.txt -+++ b/lib/dfsan/CMakeLists.txt -@@ -54,4 +54,4 @@ add_custom_command(OUTPUT ${dfsan_abilist_filename} - DEPENDS done_abilist.txt libc_ubuntu1404_abilist.txt) - add_dependencies(dfsan dfsan_abilist) - install(FILES ${dfsan_abilist_filename} -- DESTINATION ${COMPILER_RT_INSTALL_PATH}/share) -+ DESTINATION ${COMPILER_RT_INSTALL_PATH}/${CMAKE_INSTALL_FULL_DATADIR}) diff --git a/pkgs/development/compilers/llvm/8/default.nix b/pkgs/development/compilers/llvm/8/default.nix deleted file mode 100644 index 0483916a620b7..0000000000000 --- a/pkgs/development/compilers/llvm/8/default.nix +++ /dev/null @@ -1,272 +0,0 @@ -{ lowPrio, newScope, pkgs, lib, stdenv, cmake -, preLibcCrossHeaders -, libxml2, python3, isl, fetchurl, overrideCC, wrapCCWith, wrapBintoolsWith -, buildLlvmTools # tools, but from the previous stage, for cross -, targetLlvmLibraries # libraries, but from the next stage, for cross -, targetLlvm -# This is the default binutils, but with *this* version of LLD rather -# than the default LLVM version's, if LLD is the choice. We use these for -# the `useLLVM` bootstrapping below. -, bootBintoolsNoLibc ? - if stdenv.targetPlatform.linker == "lld" - then null - else pkgs.bintoolsNoLibc -, bootBintools ? - if stdenv.targetPlatform.linker == "lld" - then null - else pkgs.bintools -}: - -let - release_version = "8.0.1"; - version = release_version; # differentiating these is important for rc's - - fetch = name: sha256: fetchurl { - url = "https://github.com/llvm/llvm-project/releases/download/llvmorg-${release_version}/${name}-${version}.src.tar.xz"; - inherit sha256; - }; - - clang-tools-extra_src = fetch "clang-tools-extra" "1qf3097bc5ia8p6cpmbx985rjr3yaah5s8fc0nv7pw742yv7jw8q"; - - inherit (import ../common/common-let.nix { inherit lib release_version; }) llvm_meta; - - tools = lib.makeExtensible (tools: let - callPackage = newScope (tools // { inherit stdenv cmake libxml2 python3 isl release_version version fetch buildLlvmTools; }); - mkExtraBuildCommands0 = cc: '' - rsrc="$out/resource-root" - mkdir "$rsrc" - ln -s "${cc.lib}/lib/clang/${release_version}/include" "$rsrc" - echo "-resource-dir=$rsrc" >> $out/nix-support/cc-cflags - ''; - mkExtraBuildCommands = cc: mkExtraBuildCommands0 cc + '' - ln -s "${targetLlvmLibraries.compiler-rt.out}/lib" "$rsrc/lib" - ln -s "${targetLlvmLibraries.compiler-rt.out}/share" "$rsrc/share" - ''; - - bintoolsNoLibc' = - if bootBintoolsNoLibc == null - then tools.bintoolsNoLibc - else bootBintoolsNoLibc; - bintools' = - if bootBintools == null - then tools.bintools - else bootBintools; - - in { - - libllvm = callPackage ./llvm { - inherit llvm_meta; - }; - - # `llvm` historically had the binaries. When choosing an output explicitly, - # we need to reintroduce `outputSpecified` to get the expected behavior e.g. of lib.get* - llvm = tools.libllvm; - - libllvm-polly = callPackage ./llvm { - inherit llvm_meta; - enablePolly = true; - }; - - llvm-polly = tools.libllvm-polly.lib // { outputSpecified = false; }; - - libclang = callPackage ./clang { - inherit clang-tools-extra_src llvm_meta; - }; - - clang-unwrapped = tools.libclang; - - clang-polly-unwrapped = callPackage ./clang { - inherit llvm_meta; - inherit clang-tools-extra_src; - libllvm = tools.libllvm-polly; - enablePolly = true; - }; - - # disabled until recommonmark supports sphinx 3 - #llvm-manpages = lowPrio (tools.libllvm.override { - # enableManpages = true; - # python3 = pkgs.python3; # don't use python-boot - #}); - - clang-manpages = lowPrio (tools.libclang.override { - enableManpages = true; - python3 = pkgs.python3; # don't use python-boot - }); - - # pick clang appropriate for package set we are targeting - clang = - /**/ if stdenv.targetPlatform.libc == null then tools.clangNoLibc - else if stdenv.targetPlatform.useLLVM or false then tools.clangUseLLVM - else if (pkgs.targetPackages.stdenv or stdenv).cc.isGNU then tools.libstdcxxClang - else tools.libcxxClang; - - libstdcxxClang = wrapCCWith rec { - cc = tools.clang-unwrapped; - # libstdcxx is taken from gcc in an ad-hoc way in cc-wrapper. - libcxx = null; - extraPackages = [ - targetLlvmLibraries.compiler-rt - ]; - extraBuildCommands = mkExtraBuildCommands cc; - }; - - libcxxClang = wrapCCWith rec { - cc = tools.clang-unwrapped; - libcxx = targetLlvmLibraries.libcxx; - extraPackages = [ - libcxx.cxxabi - targetLlvmLibraries.compiler-rt - ]; - extraBuildCommands = mkExtraBuildCommands cc; - }; - - lld = callPackage ./lld { - inherit llvm_meta; - }; - - lldb = callPackage ./lldb { - inherit llvm_meta; - }; - - # Below, is the LLVM bootstrapping logic. It handles building a - # fully LLVM toolchain from scratch. No GCC toolchain should be - # pulled in. As a consequence, it is very quick to build different - # targets provided by LLVM and we can also build for what GCC - # doesn’t support like LLVM. Probably we should move to some other - # file. - - bintools-unwrapped = callPackage ../common/bintools.nix { }; - - bintoolsNoLibc = wrapBintoolsWith { - bintools = tools.bintools-unwrapped; - libc = preLibcCrossHeaders; - }; - - bintools = wrapBintoolsWith { - bintools = tools.bintools-unwrapped; - }; - - clangUseLLVM = wrapCCWith rec { - cc = tools.clang-unwrapped; - libcxx = targetLlvmLibraries.libcxx; - bintools = bintools'; - extraPackages = [ - libcxx.cxxabi - targetLlvmLibraries.compiler-rt - ] ++ lib.optionals (!stdenv.targetPlatform.isWasm) [ - targetLlvmLibraries.libunwind - ]; - extraBuildCommands = '' - echo "-rtlib=compiler-rt -Wno-unused-command-line-argument" >> $out/nix-support/cc-cflags - echo "-B${targetLlvmLibraries.compiler-rt}/lib" >> $out/nix-support/cc-cflags - '' + lib.optionalString (!stdenv.targetPlatform.isWasm) '' - echo "--unwindlib=libunwind" >> $out/nix-support/cc-cflags - '' + lib.optionalString (!stdenv.targetPlatform.isWasm && stdenv.targetPlatform.useLLVM or false) '' - echo "-lunwind" >> $out/nix-support/cc-ldflags - '' + lib.optionalString stdenv.targetPlatform.isWasm '' - echo "-fno-exceptions" >> $out/nix-support/cc-cflags - '' + mkExtraBuildCommands cc; - }; - - clangNoLibcxx = wrapCCWith rec { - cc = tools.clang-unwrapped; - libcxx = null; - bintools = bintools'; - extraPackages = [ - targetLlvmLibraries.compiler-rt - ]; - extraBuildCommands = '' - echo "-rtlib=compiler-rt" >> $out/nix-support/cc-cflags - echo "-B${targetLlvmLibraries.compiler-rt}/lib" >> $out/nix-support/cc-cflags - echo "-nostdlib++" >> $out/nix-support/cc-cflags - '' + mkExtraBuildCommands cc; - }; - - clangNoLibc = wrapCCWith rec { - cc = tools.clang-unwrapped; - libcxx = null; - bintools = bintoolsNoLibc'; - extraPackages = [ - targetLlvmLibraries.compiler-rt - ]; - extraBuildCommands = '' - echo "-rtlib=compiler-rt" >> $out/nix-support/cc-cflags - echo "-B${targetLlvmLibraries.compiler-rt}/lib" >> $out/nix-support/cc-cflags - '' + mkExtraBuildCommands cc; - }; - - clangNoCompilerRt = wrapCCWith rec { - cc = tools.clang-unwrapped; - libcxx = null; - bintools = bintoolsNoLibc'; - extraPackages = [ ]; - extraBuildCommands = '' - echo "-nostartfiles" >> $out/nix-support/cc-cflags - '' + mkExtraBuildCommands0 cc; - }; - - clangNoCompilerRtWithLibc = wrapCCWith rec { - cc = tools.clang-unwrapped; - libcxx = null; - bintools = bintools'; - extraPackages = [ ]; - extraBuildCommands = mkExtraBuildCommands0 cc; - }; - - }); - - libraries = lib.makeExtensible (libraries: let - callPackage = newScope (libraries // buildLlvmTools // { inherit stdenv cmake libxml2 python3 isl release_version version fetch; }); - in { - - compiler-rt-libc = callPackage ./compiler-rt { - inherit llvm_meta; - stdenv = if stdenv.hostPlatform.useLLVM or false - then overrideCC stdenv buildLlvmTools.clangNoCompilerRtWithLibc - else stdenv; - }; - - compiler-rt-no-libc = callPackage ./compiler-rt { - inherit llvm_meta; - stdenv = if stdenv.hostPlatform.useLLVM or false - then overrideCC stdenv buildLlvmTools.clangNoCompilerRt - else stdenv; - }; - - # N.B. condition is safe because without useLLVM both are the same. - compiler-rt = if stdenv.hostPlatform.isAndroid - then libraries.compiler-rt-libc - else libraries.compiler-rt-no-libc; - - stdenv = overrideCC stdenv buildLlvmTools.clang; - - libcxxStdenv = overrideCC stdenv buildLlvmTools.libcxxClang; - - libcxx = callPackage ./libcxx { - inherit llvm_meta; - stdenv = if stdenv.hostPlatform.useLLVM or false - then overrideCC stdenv buildLlvmTools.clangNoLibcxx - else stdenv; - }; - - libcxxabi = callPackage ./libcxxabi { - inherit llvm_meta; - stdenv = if stdenv.hostPlatform.useLLVM or false - then overrideCC stdenv buildLlvmTools.clangNoLibcxx - else stdenv; - }; - - libunwind = callPackage ./libunwind { - inherit llvm_meta; - stdenv = if stdenv.hostPlatform.useLLVM or false - then overrideCC stdenv buildLlvmTools.clangNoLibcxx - else stdenv; - }; - - openmp = callPackage ./openmp { - inherit llvm_meta targetLlvm; - }; - }); - noExtend = extensible: lib.attrsets.removeAttrs extensible [ "extend" ]; - -in { inherit tools libraries release_version; } // (noExtend libraries) // (noExtend tools) diff --git a/pkgs/development/compilers/llvm/8/libcxx/default.nix b/pkgs/development/compilers/llvm/8/libcxx/default.nix deleted file mode 100644 index 967d4b748dbe1..0000000000000 --- a/pkgs/development/compilers/llvm/8/libcxx/default.nix +++ /dev/null @@ -1,92 +0,0 @@ -{ lib, stdenv, llvm_meta, fetch, cmake, python3, fixDarwinDylibNames, version -, cxxabi ? if stdenv.hostPlatform.isFreeBSD then libcxxrt else libcxxabi -, libcxxabi, libcxxrt -, enableShared ? !stdenv.hostPlatform.isStatic -}: - -assert stdenv.isDarwin -> cxxabi.pname == "libcxxabi"; - -stdenv.mkDerivation { - pname = "libcxx"; - inherit version; - - src = fetch "libcxx" "0y4vc9z36c1zlq15cnibdzxnc1xi5glbc6klnm8a41q3db4541kz"; - - postUnpack = '' - unpackFile ${libcxxabi.src} - export LIBCXXABI_INCLUDE_DIR="$PWD/$(ls -d libcxxabi-${version}*)/include" - ''; - - outputs = [ "out" "dev" ]; - - patches = [ - ./gnu-install-dirs.patch - ] ++ lib.optionals stdenv.hostPlatform.isMusl [ - ../../libcxx-0001-musl-hacks.patch - ]; - - # Prevent errors like "error: 'foo' is unavailable: introduced in macOS yy.zz" - postPatch = '' - substituteInPlace include/__config \ - --replace "# define _LIBCPP_USE_AVAILABILITY_APPLE" "" - ''; - - prePatch = '' - substituteInPlace lib/CMakeLists.txt --replace "/usr/lib/libc++" "\''${LIBCXX_LIBCXXABI_LIB_PATH}/libc++" - ''; - - preConfigure = '' - # Get headers from the cxxabi source so we can see private headers not installed by the cxxabi package - cmakeFlagsArray=($cmakeFlagsArray -DLIBCXX_CXX_ABI_INCLUDE_PATHS="$LIBCXXABI_INCLUDE_DIR") - '' + lib.optionalString stdenv.hostPlatform.isMusl '' - patchShebangs utils/cat_files.py - ''; - nativeBuildInputs = [ cmake ] - ++ lib.optional (stdenv.hostPlatform.isMusl || stdenv.hostPlatform.isWasi) python3 - ++ lib.optional stdenv.hostPlatform.isDarwin fixDarwinDylibNames; - - buildInputs = [ cxxabi ]; - - cmakeFlags = [ - "-DLIBCXX_LIBCPPABI_VERSION=2" - "-DLIBCXX_CXX_ABI=${cxxabi.pname}" - ] ++ lib.optional (stdenv.hostPlatform.isMusl || stdenv.hostPlatform.isWasi) "-DLIBCXX_HAS_MUSL_LIBC=1" - ++ lib.optional (cxxabi.pname == "libcxxabi") "-DLIBCXX_LIBCXXABI_LIB_PATH=${cxxabi}/lib" - ++ lib.optional (stdenv.hostPlatform.useLLVM or false) "-DLIBCXX_USE_COMPILER_RT=ON" - ++ lib.optionals stdenv.hostPlatform.isWasm [ - "-DLIBCXX_ENABLE_THREADS=OFF" - "-DLIBCXX_ENABLE_FILESYSTEM=OFF" - "-DLIBCXX_ENABLE_EXCEPTIONS=OFF" - ] ++ lib.optional (!enableShared) "-DLIBCXX_ENABLE_SHARED=OFF"; - - preInstall = lib.optionalString (stdenv.isDarwin) '' - for file in lib/*.dylib; do - if [ -L "$file" ]; then continue; fi - - baseName=$(basename $(${stdenv.cc.targetPrefix}otool -D $file | tail -n 1)) - installName="$out/lib/$baseName" - abiName=$(echo "$baseName" | sed -e 's/libc++/libc++abi/') - - for other in $(${stdenv.cc.targetPrefix}otool -L $file | awk '$1 ~ "/libc\\+\\+abi" { print $1 }'); do - ${stdenv.cc.targetPrefix}install_name_tool -change $other ${cxxabi}/lib/$abiName $file - done - done - ''; - - passthru = { - isLLVM = true; - inherit cxxabi; - }; - - meta = llvm_meta // { - homepage = "https://libcxx.llvm.org/"; - description = "C++ standard library"; - longDescription = '' - libc++ is an implementation of the C++ standard library, targeting C++11, - C++14 and above. - ''; - # "All of the code in libc++ is dual licensed under the MIT license and the - # UIUC License (a BSD-like license)": - license = with lib.licenses; [ mit ncsa ]; - }; -} diff --git a/pkgs/development/compilers/llvm/8/libcxx/gnu-install-dirs.patch b/pkgs/development/compilers/llvm/8/libcxx/gnu-install-dirs.patch deleted file mode 100644 index 6af403ac86b44..0000000000000 --- a/pkgs/development/compilers/llvm/8/libcxx/gnu-install-dirs.patch +++ /dev/null @@ -1,72 +0,0 @@ -diff --git a/CMakeLists.txt b/CMakeLists.txt -index 6b83bce1ae72..63cda3e4e80c 100644 ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -26,6 +26,8 @@ set(CMAKE_MODULE_PATH - if (CMAKE_SOURCE_DIR STREQUAL CMAKE_CURRENT_SOURCE_DIR) - project(libcxx CXX C) - -+ include(GNUInstallDirs) -+ - set(PACKAGE_NAME libcxx) - set(PACKAGE_VERSION 8.0.1) - set(PACKAGE_STRING "${PACKAGE_NAME} ${PACKAGE_VERSION}") -diff --git a/cmake/Modules/HandleLibCXXABI.cmake b/cmake/Modules/HandleLibCXXABI.cmake -index 1c19d7e01af7..9c8aee8e8bb7 100644 ---- a/cmake/Modules/HandleLibCXXABI.cmake -+++ b/cmake/Modules/HandleLibCXXABI.cmake -@@ -59,7 +59,7 @@ macro(setup_abi_lib abidefines abilib abifiles abidirs) - - if (LIBCXX_INSTALL_HEADERS) - install(FILES "${LIBCXX_BINARY_INCLUDE_DIR}/${fpath}" -- DESTINATION ${LIBCXX_INSTALL_HEADER_PREFIX}include/c++/v1/${dstdir} -+ DESTINATION ${LIBCXX_INSTALL_HEADER_PREFIX}${CMAKE_INSTALL_INCLUDEDIR}/c++/v1/${dstdir} - COMPONENT cxx-headers - PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ - ) -diff --git a/include/CMakeLists.txt b/include/CMakeLists.txt -index 73f7cfc4d8e3..92cf0864ac7e 100644 ---- a/include/CMakeLists.txt -+++ b/include/CMakeLists.txt -@@ -243,7 +243,7 @@ if (LIBCXX_INSTALL_HEADERS) - foreach(file ${files}) - get_filename_component(dir ${file} DIRECTORY) - install(FILES ${file} -- DESTINATION ${LIBCXX_INSTALL_HEADER_PREFIX}include/c++/v1/${dir} -+ DESTINATION ${LIBCXX_INSTALL_HEADER_PREFIX}${CMAKE_INSTALL_INCLUDEDIR}/c++/v1/${dir} - COMPONENT cxx-headers - PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ - ) -@@ -252,7 +252,7 @@ if (LIBCXX_INSTALL_HEADERS) - if (LIBCXX_NEEDS_SITE_CONFIG) - # Install the generated header as __config. - install(FILES ${LIBCXX_BINARY_DIR}/__generated_config -- DESTINATION ${LIBCXX_INSTALL_HEADER_PREFIX}include/c++/v1 -+ DESTINATION ${LIBCXX_INSTALL_HEADER_PREFIX}${CMAKE_INSTALL_INCLUDEDIR}/c++/v1 - PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ - RENAME __config - COMPONENT cxx-headers) -diff --git a/lib/CMakeLists.txt b/lib/CMakeLists.txt -index 24489e8fb5e8..7327e5ee4b85 100644 ---- a/lib/CMakeLists.txt -+++ b/lib/CMakeLists.txt -@@ -414,8 +414,8 @@ if (LIBCXX_INSTALL_LIBRARY) - set(experimental_lib cxx_experimental) - endif() - install(TARGETS ${LIBCXX_INSTALL_TARGETS} ${filesystem_lib} ${experimental_lib} -- LIBRARY DESTINATION ${LIBCXX_INSTALL_PREFIX}lib${LIBCXX_LIBDIR_SUFFIX} COMPONENT cxx -- ARCHIVE DESTINATION ${LIBCXX_INSTALL_PREFIX}lib${LIBCXX_LIBDIR_SUFFIX} COMPONENT cxx -+ LIBRARY DESTINATION ${LIBCXX_INSTALL_PREFIX}${CMAKE_INSTALL_LIBDIR}${LIBCXX_LIBDIR_SUFFIX} COMPONENT cxx -+ ARCHIVE DESTINATION ${LIBCXX_INSTALL_PREFIX}${CMAKE_INSTALL_LIBDIR}${LIBCXX_LIBDIR_SUFFIX} COMPONENT cxx - ) - # NOTE: This install command must go after the cxx install command otherwise - # it will not be executed after the library symlinks are installed. -@@ -423,7 +423,7 @@ if (LIBCXX_INSTALL_LIBRARY) - # Replace the libc++ filename with $<TARGET_LINKER_FILE:cxx> - # after we required CMake 3.0. - install(FILES "${LIBCXX_LIBRARY_DIR}/libc++${CMAKE_SHARED_LIBRARY_SUFFIX}" -- DESTINATION ${LIBCXX_INSTALL_PREFIX}lib${LIBCXX_LIBDIR_SUFFIX} -+ DESTINATION ${LIBCXX_INSTALL_PREFIX}${CMAKE_INSTALL_LIBDIR}${LIBCXX_LIBDIR_SUFFIX} - COMPONENT libcxx) - endif() - endif() diff --git a/pkgs/development/compilers/llvm/8/libcxxabi/default.nix b/pkgs/development/compilers/llvm/8/libcxxabi/default.nix deleted file mode 100644 index 885d85b8c3e70..0000000000000 --- a/pkgs/development/compilers/llvm/8/libcxxabi/default.nix +++ /dev/null @@ -1,85 +0,0 @@ -{ lib, stdenv, llvm_meta, cmake, fetch, libcxx, libunwind, llvm, version -, enableShared ? !stdenv.hostPlatform.isStatic -}: - -stdenv.mkDerivation { - pname = "libcxxabi"; - inherit version; - - src = fetch "libcxxabi" "1vznz8n1z1h8af0ga451m98lc2hjnv4fyzl71napsvjhvk4g6nxp"; - - outputs = [ "out" "dev" ]; - - postUnpack = '' - unpackFile ${libcxx.src} - unpackFile ${llvm.src} - cmakeFlags+=" -DLLVM_PATH=$PWD/$(ls -d llvm-*) -DLIBCXXABI_LIBCXX_PATH=$PWD/$(ls -d libcxx-*)" - '' + lib.optionalString stdenv.isDarwin '' - export TRIPLE=x86_64-apple-darwin - '' + lib.optionalString stdenv.hostPlatform.isMusl '' - patch -p1 -d $(ls -d libcxx-*) -i ${../../libcxx-0001-musl-hacks.patch} - '' + lib.optionalString stdenv.hostPlatform.isWasm '' - patch -p1 -d $(ls -d llvm-*) -i ${./wasm.patch} - ''; - - patches = [ - ../../common/libcxxabi/no-threads.patch - ./gnu-install-dirs.patch - ]; - - nativeBuildInputs = [ cmake ]; - buildInputs = lib.optional (!stdenv.isDarwin && !stdenv.hostPlatform.isWasm) libunwind; - - cmakeFlags = lib.optionals (stdenv.hostPlatform.useLLVM or false) [ - "-DLLVM_ENABLE_LIBCXX=ON" - "-DLIBCXXABI_USE_LLVM_UNWINDER=ON" - ] ++ lib.optionals stdenv.hostPlatform.isWasm [ - "-DLIBCXXABI_ENABLE_THREADS=OFF" - "-DLIBCXXABI_ENABLE_EXCEPTIONS=OFF" - ] ++ lib.optionals (!enableShared) [ - "-DLIBCXXABI_ENABLE_SHARED=OFF" - ]; - - preInstall = lib.optionalString stdenv.isDarwin '' - for file in lib/*.dylib; do - if [ -L "$file" ]; then continue; fi - - # Fix up the install name. Preserve the basename, just replace the path. - installName="$out/lib/$(basename $(${stdenv.cc.targetPrefix}otool -D $file | tail -n 1))" - - # this should be done in CMake, but having trouble figuring out - # the magic combination of necessary CMake variables - # if you fancy a try, take a look at - # https://gitlab.kitware.com/cmake/community/-/wikis/doc/cmake/RPATH-handling - ${stdenv.cc.targetPrefix}install_name_tool -id $installName $file - - # cc-wrapper passes '-lc++abi' to all c++ link steps, but that causes - # libcxxabi to sometimes link against a different version of itself. - # Here we simply make that second reference point to ourselves. - for other in $(${stdenv.cc.targetPrefix}otool -L $file | awk '$1 ~ "/libc\\+\\+abi" { print $1 }'); do - ${stdenv.cc.targetPrefix}install_name_tool -change $other $installName $file - done - done - ''; - - postInstall = '' - mkdir -p "$dev/include" - install -m 644 ../include/${if stdenv.isDarwin then "*" else "cxxabi.h"} "$dev/include" - ''; - - passthru = { - libName = "c++abi"; - }; - - meta = llvm_meta // { - homepage = "https://libcxxabi.llvm.org/"; - description = "Provides C++ standard library support"; - longDescription = '' - libc++abi is a new implementation of low level support for a standard C++ library. - ''; - # "All of the code in libc++abi is dual licensed under the MIT license and - # the UIUC License (a BSD-like license)": - license = with lib.licenses; [ mit ncsa ]; - maintainers = llvm_meta.maintainers ++ [ lib.maintainers.vlstill ]; - }; -} diff --git a/pkgs/development/compilers/llvm/8/libcxxabi/gnu-install-dirs.patch b/pkgs/development/compilers/llvm/8/libcxxabi/gnu-install-dirs.patch deleted file mode 100644 index 3f924b0efbea7..0000000000000 --- a/pkgs/development/compilers/llvm/8/libcxxabi/gnu-install-dirs.patch +++ /dev/null @@ -1,28 +0,0 @@ -diff --git a/CMakeLists.txt b/CMakeLists.txt -index 92c7dc5dc557..556b3e05a042 100644 ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -20,6 +20,8 @@ set(CMAKE_MODULE_PATH - if (CMAKE_SOURCE_DIR STREQUAL CMAKE_CURRENT_SOURCE_DIR) - project(libcxxabi CXX C) - -+ include(GNUInstallDirs) -+ - set(PACKAGE_NAME libcxxabi) - set(PACKAGE_VERSION 8.0.0) - set(PACKAGE_STRING "${PACKAGE_NAME} ${PACKAGE_VERSION}") -diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt -index 7e21fb2d7926..30711099a19c 100644 ---- a/src/CMakeLists.txt -+++ b/src/CMakeLists.txt -@@ -220,8 +220,8 @@ add_custom_target(cxxabi DEPENDS ${LIBCXXABI_BUILD_TARGETS}) - - if (LIBCXXABI_INSTALL_LIBRARY) - install(TARGETS ${LIBCXXABI_INSTALL_TARGETS} -- LIBRARY DESTINATION ${LIBCXXABI_INSTALL_PREFIX}lib${LIBCXXABI_LIBDIR_SUFFIX} COMPONENT cxxabi -- ARCHIVE DESTINATION ${LIBCXXABI_INSTALL_PREFIX}lib${LIBCXXABI_LIBDIR_SUFFIX} COMPONENT cxxabi -+ LIBRARY DESTINATION ${LIBCXXABI_INSTALL_PREFIX}${CMAKE_INSTALL_LIBDIR}${LIBCXXABI_LIBDIR_SUFFIX} COMPONENT cxxabi -+ ARCHIVE DESTINATION ${LIBCXXABI_INSTALL_PREFIX}${CMAKE_INSTALL_LIBDIR}${LIBCXXABI_LIBDIR_SUFFIX} COMPONENT cxxabi - ) - endif() - diff --git a/pkgs/development/compilers/llvm/8/libunwind/default.nix b/pkgs/development/compilers/llvm/8/libunwind/default.nix deleted file mode 100644 index 244b5775bdc8c..0000000000000 --- a/pkgs/development/compilers/llvm/8/libunwind/default.nix +++ /dev/null @@ -1,40 +0,0 @@ -{ lib, stdenv, llvm_meta, version, fetch, cmake, fetchpatch -, enableShared ? !stdenv.hostPlatform.isStatic -}: - -stdenv.mkDerivation rec { - pname = "libunwind"; - inherit version; - - src = fetch pname "0vhgcgzsb33l83qaikrkj87ypqb48mi607rccczccwiiv8ficw0q"; - - patches = [ - (fetchpatch { - url = "https://github.com/llvm-mirror/libunwind/commit/34a45c630d4c79af403661d267db42fbe7de1178.patch"; - sha256 = "0n0pv6jvcky8pn3srhrf9x5kbnd0d2kia9xlx2g590f5q0bgwfhv"; - }) - (fetchpatch { - url = "https://github.com/llvm-mirror/libunwind/commit/e050272d2eb57eb4e56a37b429a61df2ebb8aa3e.patch"; - sha256 = "1sxyx5xnax8k713jjcxgq3jq3cpnxygs2rcdf5vfja0f2k9jzldl"; - }) - ./gnu-install-dirs.patch - ]; - - outputs = [ "out" "dev" ]; - - nativeBuildInputs = [ cmake ]; - - cmakeFlags = lib.optional (!enableShared) "-DLIBUNWIND_ENABLE_SHARED=OFF"; - - meta = llvm_meta // { - # Details: https://github.com/llvm/llvm-project/blob/main/libunwind/docs/index.rst - homepage = "https://clang.llvm.org/docs/Toolchain.html#unwind-library"; - description = "LLVM's unwinder library"; - longDescription = '' - The unwind library provides a family of _Unwind_* functions implementing - the language-neutral stack unwinding portion of the Itanium C++ ABI (Level - I). It is a dependency of the C++ ABI library, and sometimes is a - dependency of other runtimes. - ''; - }; -} diff --git a/pkgs/development/compilers/llvm/8/libunwind/gnu-install-dirs.patch b/pkgs/development/compilers/llvm/8/libunwind/gnu-install-dirs.patch deleted file mode 100644 index ffabba8137d6c..0000000000000 --- a/pkgs/development/compilers/llvm/8/libunwind/gnu-install-dirs.patch +++ /dev/null @@ -1,28 +0,0 @@ -diff --git a/CMakeLists.txt b/CMakeLists.txt -index 3d06073cfe74..55c7d1635fcd 100644 ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -18,6 +18,8 @@ set(CMAKE_MODULE_PATH - if (CMAKE_SOURCE_DIR STREQUAL CMAKE_CURRENT_SOURCE_DIR) - project(libunwind) - -+ include(GNUInstallDirs) -+ - # Rely on llvm-config. - set(CONFIG_OUTPUT) - if(NOT LLVM_CONFIG_PATH) -diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt -index f7523f88b6ac..4060dad214de 100644 ---- a/src/CMakeLists.txt -+++ b/src/CMakeLists.txt -@@ -151,8 +151,8 @@ add_custom_target(unwind DEPENDS ${LIBUNWIND_BUILD_TARGETS}) - - if (LIBUNWIND_INSTALL_LIBRARY) - install(TARGETS ${LIBUNWIND_INSTALL_TARGETS} -- LIBRARY DESTINATION ${LIBUNWIND_INSTALL_PREFIX}lib${LIBUNWIND_LIBDIR_SUFFIX} COMPONENT unwind -- ARCHIVE DESTINATION ${LIBUNWIND_INSTALL_PREFIX}lib${LIBUNWIND_LIBDIR_SUFFIX} COMPONENT unwind) -+ LIBRARY DESTINATION ${LIBUNWIND_INSTALL_PREFIX}${CMAKE_INSTALL_LIBDIR}${LIBUNWIND_LIBDIR_SUFFIX} COMPONENT unwind -+ ARCHIVE DESTINATION ${LIBUNWIND_INSTALL_PREFIX}${CMAKE_INSTALL_LIBDIR}${LIBUNWIND_LIBDIR_SUFFIX} COMPONENT unwind) - endif() - - if (NOT CMAKE_CONFIGURATION_TYPES AND LIBUNWIND_INSTALL_LIBRARY) diff --git a/pkgs/development/compilers/llvm/8/lld/default.nix b/pkgs/development/compilers/llvm/8/lld/default.nix deleted file mode 100644 index 9a3a49db78555..0000000000000 --- a/pkgs/development/compilers/llvm/8/lld/default.nix +++ /dev/null @@ -1,46 +0,0 @@ -{ lib, stdenv, llvm_meta -, buildLlvmTools -, fetch -, cmake -, libxml2 -, libllvm -, version -}: - -stdenv.mkDerivation rec { - pname = "lld"; - inherit version; - - src = fetch pname "121xhxrlvwy3k5nf6p1wv31whxlb635ssfkci8z93mwv4ja1xflz"; - - patches = [ - ./gnu-install-dirs.patch - ]; - - nativeBuildInputs = [ cmake ]; - buildInputs = [ libllvm libxml2 ]; - - cmakeFlags = [ - "-DLLVM_CONFIG_PATH=${libllvm.dev}/bin/llvm-config${lib.optionalString (stdenv.hostPlatform != stdenv.buildPlatform) "-native"}" - ] ++ lib.optionals (stdenv.hostPlatform != stdenv.buildPlatform) [ - "-DLLVM_TABLEGEN_EXE=${buildLlvmTools.llvm}/bin/llvm-tblgen" - ]; - - # Musl's default stack size is too small for lld to be able to link Firefox. - LDFLAGS = lib.optionalString stdenv.hostPlatform.isMusl "-Wl,-z,stack-size=2097152"; - - outputs = [ "out" "lib" "dev" ]; - - meta = llvm_meta // { - homepage = "https://lld.llvm.org/"; - description = "The LLVM linker (unwrapped)"; - longDescription = '' - LLD is a linker from the LLVM project that is a drop-in replacement for - system linkers and runs much faster than them. It also provides features - that are useful for toolchain developers. - The linker supports ELF (Unix), PE/COFF (Windows), Mach-O (macOS), and - WebAssembly in descending order of completeness. Internally, LLD consists - of several different linkers. - ''; - }; -} diff --git a/pkgs/development/compilers/llvm/8/lld/gnu-install-dirs.patch b/pkgs/development/compilers/llvm/8/lld/gnu-install-dirs.patch deleted file mode 100644 index acc2d3d47760b..0000000000000 --- a/pkgs/development/compilers/llvm/8/lld/gnu-install-dirs.patch +++ /dev/null @@ -1,68 +0,0 @@ -diff --git a/CMakeLists.txt b/CMakeLists.txt -index e2fbdbfbbb47..d601b231ebb8 100644 ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -6,6 +6,8 @@ if(CMAKE_SOURCE_DIR STREQUAL CMAKE_CURRENT_SOURCE_DIR) - set(CMAKE_INCLUDE_CURRENT_DIR ON) - set(LLD_BUILT_STANDALONE TRUE) - -+ include(GNUInstallDirs) -+ - find_program(LLVM_CONFIG_PATH "llvm-config" DOC "Path to llvm-config binary") - if(NOT LLVM_CONFIG_PATH) - message(FATAL_ERROR "llvm-config not found: specify LLVM_CONFIG_PATH") -@@ -203,7 +205,7 @@ include_directories(BEFORE - - if (NOT LLVM_INSTALL_TOOLCHAIN_ONLY) - install(DIRECTORY include/ -- DESTINATION include -+ DESTINATION ${CMAKE_INSTALL_INCLUDEDIR} - FILES_MATCHING - PATTERN "*.h" - PATTERN ".svn" EXCLUDE -diff --git a/cmake/modules/AddLLD.cmake b/cmake/modules/AddLLD.cmake -index fa48b428d26b..e7967aad3ceb 100644 ---- a/cmake/modules/AddLLD.cmake -+++ b/cmake/modules/AddLLD.cmake -@@ -20,9 +20,9 @@ macro(add_lld_library name) - install(TARGETS ${name} - COMPONENT ${name} - ${export_to_lldtargets} -- LIBRARY DESTINATION lib${LLVM_LIBDIR_SUFFIX} -- ARCHIVE DESTINATION lib${LLVM_LIBDIR_SUFFIX} -- RUNTIME DESTINATION bin) -+ LIBRARY DESTINATION ${CMAKE_INSTALL_LIBDIR}${LLVM_LIBDIR_SUFFIX} -+ ARCHIVE DESTINATION ${CMAKE_INSTALL_LIBDIR}${LLVM_LIBDIR_SUFFIX} -+ RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) - - if (${ARG_SHARED} AND NOT CMAKE_CONFIGURATION_TYPES) - add_llvm_install_targets(install-${name} -@@ -54,7 +54,7 @@ macro(add_lld_tool name) - - install(TARGETS ${name} - ${export_to_lldtargets} -- RUNTIME DESTINATION bin -+ RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR} - COMPONENT ${name}) - - if(NOT CMAKE_CONFIGURATION_TYPES) -@@ -69,5 +69,5 @@ endmacro() - macro(add_lld_symlink name dest) - add_llvm_tool_symlink(${name} ${dest} ALWAYS_GENERATE) - # Always generate install targets -- llvm_install_symlink(${name} ${dest} ALWAYS_GENERATE) -+ llvm_install_symlink(${name} ${dest} ${CMAKE_INSTALL_FULL_BINDIR} ALWAYS_GENERATE) - endmacro() -diff --git a/tools/lld/CMakeLists.txt b/tools/lld/CMakeLists.txt -index d8829493fc22..df748a0e749b 100644 ---- a/tools/lld/CMakeLists.txt -+++ b/tools/lld/CMakeLists.txt -@@ -16,7 +16,7 @@ target_link_libraries(lld - ) - - install(TARGETS lld -- RUNTIME DESTINATION bin) -+ RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) - - if(NOT LLD_SYMLINKS_TO_CREATE) - set(LLD_SYMLINKS_TO_CREATE lld-link ld.lld ld64.lld wasm-ld) diff --git a/pkgs/development/compilers/llvm/8/lldb/default.nix b/pkgs/development/compilers/llvm/8/lldb/default.nix deleted file mode 100644 index 4e8cdcdf8ac2f..0000000000000 --- a/pkgs/development/compilers/llvm/8/lldb/default.nix +++ /dev/null @@ -1,109 +0,0 @@ -{ lib, stdenv, llvm_meta -, fetch -, cmake -, zlib -, ncurses -, swig -, which -, libedit -, libxml2 -, libllvm -, libclang -, python3 -, version -, darwin -, makeWrapper -}: - -stdenv.mkDerivation rec { - pname = "lldb"; - inherit version; - - src = fetch "lldb" "1mriw4adrwm6kzabrjr7yqmdiylxd6glf6samd80dp8idnm9p9z8"; - - patches = [ - ./gnu-install-dirs.patch - - # Fix darwin build - ./lldb-gdb-remote-no-libcompress.patch - ]; - - postPatch = '' - # Fix up various paths that assume llvm and clang are installed in the same place - sed -i 's,".*ClangConfig.cmake","${libclang.dev}/lib/cmake/clang/ClangConfig.cmake",' \ - cmake/modules/LLDBStandalone.cmake - sed -i 's,".*tools/clang/include","${libclang.dev}/include",' \ - cmake/modules/LLDBStandalone.cmake - sed -i 's,"$.LLVM_LIBRARY_DIR.",${libllvm.lib}/lib ${libclang.lib}/lib,' \ - cmake/modules/LLDBStandalone.cmake - - substituteInPlace tools/CMakeLists.txt \ - --replace "add_subdirectory(debugserver)" "" - ''; - - outputs = [ "out" "lib" "dev" ]; - - nativeBuildInputs = [ - cmake python3 which swig makeWrapper - ]; - - buildInputs = [ - ncurses zlib libedit libxml2 libllvm - ] ++ lib.optionals stdenv.isDarwin [ - darwin.libobjc - darwin.apple_sdk.libs.xpc - darwin.apple_sdk.frameworks.Foundation - darwin.bootstrap_cmds - darwin.apple_sdk.frameworks.Carbon - darwin.apple_sdk.frameworks.Cocoa - darwin.apple_sdk.frameworks.DebugSymbols - ]; - - CXXFLAGS = "-fno-rtti"; - hardeningDisable = [ "format" ]; - - cmakeFlags = [ - "-DLLDB_INCLUDE_TESTS=${if doCheck then "YES" else "NO"}" - "-DLLDB_CODESIGN_IDENTITY=" # codesigning makes nondeterministic - ] ++ lib.optionals stdenv.isDarwin [ - # Building debugserver requires the proprietary libcompression - "-DLLDB_NO_DEBUGSERVER=ON" - ] ++ lib.optionals doCheck [ - "-DLLDB_TEST_C_COMPILER=${stdenv.cc}/bin/${stdenv.cc.targetPrefix}cc" - "-DLLDB_TEST_CXX_COMPILER=${stdenv.cc}/bin/${stdenv.cc.targetPrefix}c++" - ]; - - doCheck = false; - - doInstallCheck = true; - - installCheckPhase = '' - if [ ! -e "$lib/${python3.sitePackages}/lldb/_lldb.so" ] ; then - echo "ERROR: python files not installed where expected!"; - return 1; - fi - ''; - - postInstall = '' - wrapProgram $out/bin/lldb --prefix PYTHONPATH : $lib/${python3.sitePackages}/ - - mkdir -p $out/share/man/man1 - cp ../docs/lldb.1 $out/share/man/man1/ - - install -D ../tools/lldb-vscode/package.json $out/share/vscode/extensions/llvm-org.lldb-vscode-0.1.0/package.json - mkdir -p $out/share/vscode/extensions/llvm-org.lldb-vscode-0.1.0/bin - ln -s $out/bin/llvm-vscode $out/share/vscode/extensions/llvm-org.lldb-vscode-0.1.0/bin - ''; - - meta = llvm_meta // { - broken = stdenv.isDarwin && stdenv.isAarch64; - homepage = "https://lldb.llvm.org/"; - description = "A next-generation high-performance debugger"; - longDescription = '' - LLDB is a next generation, high-performance debugger. It is built as a set - of reusable components which highly leverage existing libraries in the - larger LLVM Project, such as the Clang expression parser and LLVM - disassembler. - ''; - }; -} diff --git a/pkgs/development/compilers/llvm/8/lldb/gnu-install-dirs.patch b/pkgs/development/compilers/llvm/8/lldb/gnu-install-dirs.patch deleted file mode 100644 index 08b6fae654e51..0000000000000 --- a/pkgs/development/compilers/llvm/8/lldb/gnu-install-dirs.patch +++ /dev/null @@ -1,120 +0,0 @@ -diff --git a/CMakeLists.txt b/CMakeLists.txt -index cdf22c4b0fc8..8def776f2b4a 100644 ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -7,6 +7,8 @@ set(CMAKE_MODULE_PATH - "${CMAKE_CURRENT_SOURCE_DIR}/cmake/modules" - ) - -+include(GNUInstallDirs) -+ - include(LLDBStandalone) - include(LLDBConfig) - include(AddLLDB) -diff --git a/cmake/modules/AddLLDB.cmake b/cmake/modules/AddLLDB.cmake -index f82c11d3d317..776e6d6ef9de 100644 ---- a/cmake/modules/AddLLDB.cmake -+++ b/cmake/modules/AddLLDB.cmake -@@ -63,18 +63,18 @@ function(add_lldb_library name) - set(install_dir ".") - endif() - else() -- set(install_dir lib${LLVM_LIBDIR_SUFFIX}) -+ set(install_dir ${CMAKE_INSTALL_LIBDIR}${LLVM_LIBDIR_SUFFIX}) - endif() - install(TARGETS ${name} - COMPONENT ${name} -- RUNTIME DESTINATION bin -+ RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR} - LIBRARY DESTINATION ${install_dir} - ARCHIVE DESTINATION ${install_dir}) - else() - install(TARGETS ${name} - COMPONENT ${name} -- LIBRARY DESTINATION lib${LLVM_LIBDIR_SUFFIX} -- ARCHIVE DESTINATION lib${LLVM_LIBDIR_SUFFIX}) -+ LIBRARY DESTINATION ${CMAKE_INSTALL_LIBDIR}${LLVM_LIBDIR_SUFFIX} -+ ARCHIVE DESTINATION ${CMAKE_INSTALL_LIBDIR}${LLVM_LIBDIR_SUFFIX}) - endif() - if (NOT CMAKE_CONFIGURATION_TYPES) - add_llvm_install_targets(install-${name} -@@ -122,7 +122,7 @@ function(add_lldb_executable name) - if(ARG_GENERATE_INSTALL) - install(TARGETS ${name} - COMPONENT ${name} -- RUNTIME DESTINATION bin) -+ RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) - if (NOT CMAKE_CONFIGURATION_TYPES) - add_llvm_install_targets(install-${name} - DEPENDS ${name} -diff --git a/cmake/modules/LLDBConfig.cmake b/cmake/modules/LLDBConfig.cmake -index 109c5132d3be..8b9092faa29d 100644 ---- a/cmake/modules/LLDBConfig.cmake -+++ b/cmake/modules/LLDBConfig.cmake -@@ -319,7 +319,7 @@ include_directories(BEFORE - if (NOT LLVM_INSTALL_TOOLCHAIN_ONLY) - install(DIRECTORY include/ - COMPONENT lldb-headers -- DESTINATION include -+ DESTINATION ${CMAKE_INSTALL_INCLUDEDIR} - FILES_MATCHING - PATTERN "*.h" - PATTERN ".svn" EXCLUDE -@@ -329,7 +329,7 @@ if (NOT LLVM_INSTALL_TOOLCHAIN_ONLY) - - install(DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/include/ - COMPONENT lldb-headers -- DESTINATION include -+ DESTINATION ${CMAKE_INSTALL_INCLUDEDIR} - FILES_MATCHING - PATTERN "*.h" - PATTERN ".svn" EXCLUDE -diff --git a/tools/intel-features/CMakeLists.txt b/tools/intel-features/CMakeLists.txt -index b5316540fdf3..3c3c882d503f 100644 ---- a/tools/intel-features/CMakeLists.txt -+++ b/tools/intel-features/CMakeLists.txt -@@ -64,4 +64,4 @@ if (NOT LLDB_DISABLE_PYTHON AND LLDB_BUILD_INTEL_PT) - endif() - - install(TARGETS lldbIntelFeatures -- LIBRARY DESTINATION lib${LLVM_LIBDIR_SUFFIX}) -+ LIBRARY DESTINATION ${CMAKE_INSTALL_LIBDIR}${LLVM_LIBDIR_SUFFIX}) -diff --git a/CMakeLists.txt b/CMakeLists.txt -index cdf22c4..d56fc6a 100644 ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -146,7 +146,7 @@ if (NOT LLDB_DISABLE_PYTHON) - --cfgBldDir=${lldb_scripts_dir} - --prefix=${CMAKE_BINARY_DIR} - --cmakeBuildConfiguration=${CMAKE_CFG_INTDIR} -- --lldbLibDir=lib${LLVM_LIBDIR_SUFFIX} -+ --lldbLibDir=${CMAKE_INSTALL_LIBDIR}${LLVM_LIBDIR_SUFFIX} - ${use_python_wrapper_from_src_dir} - ${use_six_py_from_system} - VERBATIM -diff --git a/cmake/modules/LLDBStandalone.cmake b/cmake/modules/LLDBStandalone.cmake -index a9059dd..d76a47d 100644 ---- a/cmake/modules/LLDBStandalone.cmake -+++ b/cmake/modules/LLDBStandalone.cmake -@@ -124,7 +124,7 @@ if (CMAKE_SOURCE_DIR STREQUAL CMAKE_CURRENT_SOURCE_DIR) - link_directories("${LLVM_LIBRARY_DIR}") - - set(CMAKE_RUNTIME_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/bin) -- set(CMAKE_LIBRARY_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/lib${LLVM_LIBDIR_SUFFIX}) -+ set(CMAKE_LIBRARY_OUTPUT_DIRECTORY ${CMAKE_INSTALL_LIBDIR}/lib${LLVM_LIBDIR_SUFFIX}) - set(CMAKE_ARCHIVE_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/lib${LLVM_LIBDIR_SUFFIX}) - - set(LLDB_BUILT_STANDALONE 1) -diff --git a/scripts/CMakeLists.txt b/scripts/CMakeLists.txt -index 3598247..bd60451 100644 ---- a/scripts/CMakeLists.txt -+++ b/scripts/CMakeLists.txt -@@ -47,7 +47,7 @@ if(NOT LLDB_BUILD_FRAMEWORK) - endif() - - set(SWIG_PYTHON_DIR ${LLVM_LIBRARY_OUTPUT_INTDIR}/${swig_python_subdir}) -- set(SWIG_INSTALL_DIR lib${LLVM_LIBDIR_SUFFIX}) -+ set(SWIG_INSTALL_DIR ${CMAKE_INSTALL_LIBDIR}${LLVM_LIBDIR_SUFFIX}) - - # Install the LLDB python module - install(DIRECTORY ${SWIG_PYTHON_DIR} DESTINATION ${SWIG_INSTALL_DIR}) diff --git a/pkgs/development/compilers/llvm/8/lldb/lldb-gdb-remote-no-libcompress.patch b/pkgs/development/compilers/llvm/8/lldb/lldb-gdb-remote-no-libcompress.patch deleted file mode 100644 index e04d4ffb1060d..0000000000000 --- a/pkgs/development/compilers/llvm/8/lldb/lldb-gdb-remote-no-libcompress.patch +++ /dev/null @@ -1,30 +0,0 @@ -diff -ru a/source/Plugins/Process/gdb-remote/GDBRemoteCommunication.cpp b/source/Plugins/Process/gdb-remote/GDBRemoteCommunication.cpp ---- a/source/Plugins/Process/gdb-remote/GDBRemoteCommunication.cpp 2019-01-09 19:46:09.000000000 -0500 -+++ b/source/Plugins/Process/gdb-remote/GDBRemoteCommunication.cpp 2021-11-27 00:23:08.000000000 -0500 -@@ -42,11 +42,6 @@ - #define DEBUGSERVER_BASENAME "lldb-server" - #endif - --#if defined(__APPLE__) --#define HAVE_LIBCOMPRESSION --#include <compression.h> --#endif -- - #if defined(HAVE_LIBZ) - #include <zlib.h> - #endif -diff -ru a/source/Plugins/Process/gdb-remote/GDBRemoteCommunicationClient.cpp b/source/Plugins/Process/gdb-remote/GDBRemoteCommunicationClient.cpp ---- a/source/Plugins/Process/gdb-remote/GDBRemoteCommunicationClient.cpp 2018-12-18 18:02:50.000000000 -0500 -+++ b/source/Plugins/Process/gdb-remote/GDBRemoteCommunicationClient.cpp 2021-11-27 00:09:07.000000000 -0500 -@@ -37,11 +37,6 @@ - - #include "llvm/ADT/StringSwitch.h" - --#if defined(__APPLE__) --#define HAVE_LIBCOMPRESSION --#include <compression.h> --#endif -- - using namespace lldb; - using namespace lldb_private; - using namespace lldb_private::process_gdb_remote; diff --git a/pkgs/development/compilers/llvm/8/llvm/default.nix b/pkgs/development/compilers/llvm/8/llvm/default.nix deleted file mode 100644 index 7cef04347429c..0000000000000 --- a/pkgs/development/compilers/llvm/8/llvm/default.nix +++ /dev/null @@ -1,329 +0,0 @@ -{ lib, stdenv, llvm_meta -, pkgsBuildBuild -, fetch -, fetchpatch -, cmake -, python3 -, libffi -, enableGoldPlugin ? libbfd.hasPluginAPI -, libbfd -, libpfm -, libxml2 -, ncurses -, version -, release_version -, zlib -, buildLlvmTools -, debugVersion ? false -, doCheck ? stdenv.isLinux && (!stdenv.isx86_32) - && (stdenv.hostPlatform == stdenv.buildPlatform) -, enableManpages ? false -, enableSharedLibraries ? !stdenv.hostPlatform.isStatic -# broken for Ampere eMAG 8180 (c2.large.arm on Packet) #56245 -# broken for the armv7l builder -, enablePFM ? stdenv.isLinux && !stdenv.hostPlatform.isAarch -, enablePolly ? false -}: - -let - inherit (lib) optional optionals optionalString; - - # Used when creating a version-suffixed symlink of libLLVM.dylib - shortVersion = with lib; - concatStringsSep "." (take 1 (splitVersion release_version)); - - # Ordinarily we would just the `doCheck` and `checkDeps` functionality - # `mkDerivation` gives us to manage our test dependencies (instead of breaking - # out `doCheck` as a package level attribute). - # - # Unfortunately `lit` does not forward `$PYTHONPATH` to children processes, in - # particular the children it uses to do feature detection. - # - # This means that python deps we add to `checkDeps` (which the python - # interpreter is made aware of via `$PYTHONPATH` – populated by the python - # setup hook) are not picked up by `lit` which causes it to skip tests. - # - # Adding `python3.withPackages (ps: [ ... ])` to `checkDeps` also doesn't work - # because this package is shadowed in `$PATH` by the regular `python3` - # package. - # - # So, we "manually" assemble one python derivation for the package to depend - # on, taking into account whether checks are enabled or not: - python = if doCheck then - let - checkDeps = ps: with ps; [ psutil ]; - in python3.withPackages checkDeps - else python3; - -in stdenv.mkDerivation (rec { - pname = "llvm"; - inherit version; - - src = fetch "llvm" "1rvm5gqp5v8hfn17kqws3zhk94w4kxndal12bqa0y57p09nply24"; - polly_src = fetch "polly" "1lfjdz3ilj5xmjxvicd8f5ykybks67ry2pdb777352r3mzlgg8g8"; - - unpackPhase = '' - unpackFile $src - mv llvm-${version}* llvm - sourceRoot=$PWD/llvm - '' + optionalString enablePolly '' - unpackFile $polly_src - mv polly-* $sourceRoot/tools/polly - ''; - - outputs = [ "out" "lib" "dev" "python" ]; - - nativeBuildInputs = [ cmake python ] - ++ optionals enableManpages [ python3.pkgs.sphinx python3.pkgs.recommonmark ]; - - buildInputs = [ libxml2 libffi ] - ++ optional enablePFM libpfm; # exegesis - - propagatedBuildInputs = [ ncurses zlib ]; - - patches = [ - # When cross-compiling we configure llvm-config-native with an approximation - # of the flags used for the normal LLVM build. To avoid the need for building - # a native libLLVM.so (which would fail) we force llvm-config to be linked - # statically against the necessary LLVM components always. - ../../llvm-config-link-static.patch - - # Fix missing includes for GCC 10 - (fetchpatch { - url = "https://bugs.gentoo.org/attachment.cgi?id=612792"; - sha256 = "0rwx6jpqq4xnf4mvfm8v2d4r34y1yi05am0mx5k2d5bha9j64lqg"; - }) - ./gnu-install-dirs.patch - - # Fix missing includes for GCC 11 - (fetchpatch { - name = "headers-gcc-11.patch"; - url = "https://github.com/llvm/llvm-project/commit/b498303066a63a203d24f739b2d2e0e56dca70d1.patch"; - sha256 = "0nh123kld0dgz2h941lng331dkj3wbm5lfxm375k1f569gv83hlk"; - stripLen = 1; - }) - - # Fix invalid std::string(nullptr) for GCC 12 - (fetchpatch { - name = "nvptx-gcc-12.patch"; - url = "https://github.com/llvm/llvm-project/commit/99e64623ec9b31def9375753491cc6093c831809.patch"; - sha256 = "0zjfjgavqzi2ypqwqnlvy6flyvdz8hi1anwv0ybwnm2zqixg7za3"; - stripLen = 1; - }) - - # Fix musl build. - (fetchpatch { - url = "https://github.com/llvm/llvm-project/commit/5cd554303ead0f8891eee3cd6d25cb07f5a7bf67.patch"; - relative = "llvm"; - hash = "sha256-XPbvNJ45SzjMGlNUgt/IgEvM2dHQpDOe6woUJY+nUYA="; - }) - ] ++ lib.optionals enablePolly [ - ./gnu-install-dirs-polly.patch - # Add missing isl header includess required to build LLVM 8 + Polly with clang 16. - (fetchpatch { - name = "polly-ppcg-isl-headers.patch"; - url = "https://repo.or.cz/ppcg.git/patch/098ba285306114dc71497f7b51c357f69c9b4472"; - hash = "sha256-c9L30rDROYAMbUSuaK9U/ixyFMlH/Sa1n+VgLODzSCQ="; - extraPrefix = "tools/polly/lib/External/ppcg/"; - stripLen = 1; - }) - ]; - - postPatch = optionalString stdenv.isDarwin '' - substituteInPlace cmake/modules/AddLLVM.cmake \ - --replace 'set(_install_name_dir INSTALL_NAME_DIR "@rpath")' "set(_install_name_dir)" \ - --replace 'set(_install_rpath "@loader_path/../''${CMAKE_INSTALL_LIBDIR}" ''${extra_libdir})' "" - '' + '' - # FileSystem permissions tests fail with various special bits - substituteInPlace unittests/Support/CMakeLists.txt \ - --replace "Path.cpp" "" - rm unittests/Support/Path.cpp - '' + optionalString stdenv.hostPlatform.isMusl '' - patch -p1 -i ${../../TLI-musl.patch} - substituteInPlace unittests/Support/CMakeLists.txt \ - --replace "add_subdirectory(DynamicLibrary)" "" - rm unittests/Support/DynamicLibrary/DynamicLibraryTest.cpp - # valgrind unhappy with musl or glibc, but fails w/musl only - rm test/CodeGen/AArch64/wineh4.mir - '' + '' - patchShebangs test/BugPoint/compile-custom.ll.py - '' + '' - # Tweak tests to ignore namespace part of type to support - # gcc-12: https://gcc.gnu.org/PR103598. - # The change below mangles strings like: - # CHECK-NEXT: Starting llvm::Function pass manager run. - # to: - # CHECK-NEXT: Starting {{.*}}Function pass manager run. - for f in \ - test/Other/new-pass-manager.ll \ - test/Other/new-pm-defaults.ll \ - test/Other/new-pm-lto-defaults.ll \ - test/Other/new-pm-thinlto-defaults.ll \ - test/Other/pass-pipeline-parsing.ll \ - test/Transforms/Inline/cgscc-incremental-invalidate.ll \ - test/Transforms/Inline/clear-analyses.ll \ - test/Transforms/LoopUnroll/unroll-loop-invalidation.ll \ - test/Transforms/SCCP/ipsccp-preserve-analysis.ll \ - test/Transforms/SCCP/preserve-analysis.ll \ - test/Transforms/SROA/dead-inst.ll \ - test/tools/gold/X86/new-pm.ll \ - ; do - echo "PATCH: $f" - substituteInPlace $f \ - --replace 'Starting llvm::' 'Starting {{.*}}' \ - --replace 'Finished llvm::' 'Finished {{.*}}' - done - ''; - - preConfigure = '' - # Workaround for configure flags that need to have spaces - cmakeFlagsArray+=( - -DLLVM_LIT_ARGS='-svj''${NIX_BUILD_CORES} --no-progress-bar' - ) - ''; - - # hacky fix: created binaries need to be run before installation - preBuild = '' - mkdir -p $out/ - ln -sv $PWD/lib $out - ''; - - cmakeBuildType = if debugVersion then "Debug" else "Release"; - - cmakeFlags = with stdenv; let - # These flags influence llvm-config's BuildVariables.inc in addition to the - # general build. We need to make sure these are also passed via - # CROSS_TOOLCHAIN_FLAGS_NATIVE when cross-compiling or llvm-config-native - # will return different results from the cross llvm-config. - # - # Some flags don't need to be repassed because LLVM already does so (like - # CMAKE_BUILD_TYPE), others are irrelevant to the result. - flagsForLlvmConfig = [ - "-DLLVM_INSTALL_CMAKE_DIR=${placeholder "dev"}/lib/cmake/llvm/" - "-DLLVM_ENABLE_RTTI=ON" - ] ++ optionals enableSharedLibraries [ - "-DLLVM_LINK_LLVM_DYLIB=ON" - ]; - in flagsForLlvmConfig ++ [ - "-DLLVM_INSTALL_UTILS=ON" # Needed by rustc - "-DLLVM_BUILD_TESTS=${if doCheck then "ON" else "OFF"}" - "-DLLVM_ENABLE_FFI=ON" - "-DLLVM_HOST_TRIPLE=${stdenv.hostPlatform.config}" - "-DLLVM_DEFAULT_TARGET_TRIPLE=${stdenv.hostPlatform.config}" - "-DLLVM_ENABLE_DUMP=ON" - ] ++ optionals enableManpages [ - "-DLLVM_BUILD_DOCS=ON" - "-DLLVM_ENABLE_SPHINX=ON" - "-DSPHINX_OUTPUT_MAN=ON" - "-DSPHINX_OUTPUT_HTML=OFF" - "-DSPHINX_WARNINGS_AS_ERRORS=OFF" - ] ++ optionals (enableGoldPlugin) [ - "-DLLVM_BINUTILS_INCDIR=${libbfd.dev}/include" - ] ++ optionals (isDarwin) [ - "-DLLVM_ENABLE_LIBCXX=ON" - "-DCAN_TARGET_i386=false" - ] ++ optionals (stdenv.hostPlatform != stdenv.buildPlatform) [ - "-DCMAKE_CROSSCOMPILING=True" - "-DLLVM_TABLEGEN=${buildLlvmTools.llvm}/bin/llvm-tblgen" - ( - let - nativeCC = pkgsBuildBuild.targetPackages.stdenv.cc; - nativeBintools = nativeCC.bintools.bintools; - nativeToolchainFlags = [ - "-DCMAKE_C_COMPILER=${nativeCC}/bin/${nativeCC.targetPrefix}cc" - "-DCMAKE_CXX_COMPILER=${nativeCC}/bin/${nativeCC.targetPrefix}c++" - "-DCMAKE_AR=${nativeBintools}/bin/${nativeBintools.targetPrefix}ar" - "-DCMAKE_STRIP=${nativeBintools}/bin/${nativeBintools.targetPrefix}strip" - "-DCMAKE_RANLIB=${nativeBintools}/bin/${nativeBintools.targetPrefix}ranlib" - ]; - # We need to repass the custom GNUInstallDirs values, otherwise CMake - # will choose them for us, leading to wrong results in llvm-config-native - nativeInstallFlags = [ - "-DCMAKE_INSTALL_PREFIX=${placeholder "out"}" - "-DCMAKE_INSTALL_BINDIR=${placeholder "out"}/bin" - "-DCMAKE_INSTALL_INCLUDEDIR=${placeholder "dev"}/include" - "-DCMAKE_INSTALL_LIBDIR=${placeholder "lib"}/lib" - "-DCMAKE_INSTALL_LIBEXECDIR=${placeholder "lib"}/libexec" - ]; - in "-DCROSS_TOOLCHAIN_FLAGS_NATIVE:list=" - + lib.concatStringsSep ";" (lib.concatLists [ - flagsForLlvmConfig - nativeToolchainFlags - nativeInstallFlags - ]) - ) - ]; - - postBuild = '' - rm -fR $out - ''; - - preCheck = '' - export LD_LIBRARY_PATH=$LD_LIBRARY_PATH''${LD_LIBRARY_PATH:+:}$PWD/lib - ''; - - postInstall = '' - mkdir -p $python/share - mv $out/share/opt-viewer $python/share/opt-viewer - moveToOutput "bin/llvm-config*" "$dev" - substituteInPlace "$dev/lib/cmake/llvm/LLVMExports-${if debugVersion then "debug" else "release"}.cmake" \ - --replace "\''${_IMPORT_PREFIX}/lib/lib" "$lib/lib/lib" \ - --replace "$out/bin/llvm-config" "$dev/bin/llvm-config" - substituteInPlace "$dev/lib/cmake/llvm/LLVMConfig.cmake" \ - --replace 'set(LLVM_BINARY_DIR "''${LLVM_INSTALL_PREFIX}")' 'set(LLVM_BINARY_DIR "''${LLVM_INSTALL_PREFIX}'"$lib"'")' - '' - + optionalString (stdenv.isDarwin && enableSharedLibraries) '' - ln -s $lib/lib/libLLVM.dylib $lib/lib/libLLVM-${shortVersion}.dylib - ln -s $lib/lib/libLLVM.dylib $lib/lib/libLLVM-${release_version}.dylib - '' - + optionalString (stdenv.buildPlatform != stdenv.hostPlatform) '' - cp NATIVE/bin/llvm-config $dev/bin/llvm-config-native - ''; - - inherit doCheck; - - checkTarget = "check-all"; - - requiredSystemFeatures = [ "big-parallel" ]; - meta = llvm_meta // { - homepage = "https://llvm.org/"; - description = "A collection of modular and reusable compiler and toolchain technologies"; - longDescription = '' - The LLVM Project is a collection of modular and reusable compiler and - toolchain technologies. Despite its name, LLVM has little to do with - traditional virtual machines. The name "LLVM" itself is not an acronym; it - is the full name of the project. - LLVM began as a research project at the University of Illinois, with the - goal of providing a modern, SSA-based compilation strategy capable of - supporting both static and dynamic compilation of arbitrary programming - languages. Since then, LLVM has grown to be an umbrella project consisting - of a number of subprojects, many of which are being used in production by - a wide variety of commercial and open source projects as well as being - widely used in academic research. Code in the LLVM project is licensed - under the "Apache 2.0 License with LLVM exceptions". - ''; - }; -} // lib.optionalAttrs enableManpages { - pname = "llvm-manpages"; - - buildPhase = '' - make docs-llvm-man - ''; - - propagatedBuildInputs = []; - - installPhase = '' - make -C docs install - ''; - - postPatch = null; - postInstall = null; - - outputs = [ "out" ]; - - doCheck = false; - - meta = llvm_meta // { - description = "man pages for LLVM ${version}"; - }; -}) diff --git a/pkgs/development/compilers/llvm/8/llvm/gnu-install-dirs-polly.patch b/pkgs/development/compilers/llvm/8/llvm/gnu-install-dirs-polly.patch deleted file mode 100644 index 7c477c7df58a1..0000000000000 --- a/pkgs/development/compilers/llvm/8/llvm/gnu-install-dirs-polly.patch +++ /dev/null @@ -1,106 +0,0 @@ -diff --git a/tools/polly/CMakeLists.txt b/tools/polly/CMakeLists.txt -index 9939097f743e..8cc538da912a 100644 ---- a/tools/polly/CMakeLists.txt -+++ b/tools/polly/CMakeLists.txt -@@ -2,7 +2,11 @@ - if (NOT DEFINED LLVM_MAIN_SRC_DIR) - project(Polly) - cmake_minimum_required(VERSION 3.4.3) -+endif() -+ -+include(GNUInstallDirs) - -+if (NOT DEFINED LLVM_MAIN_SRC_DIR) - # Where is LLVM installed? - find_package(LLVM CONFIG REQUIRED) - set(CMAKE_MODULE_PATH ${CMAKE_MODULE_PATH} ${LLVM_CMAKE_DIR}) -@@ -145,14 +149,14 @@ include_directories( - - if (NOT LLVM_INSTALL_TOOLCHAIN_ONLY) - install(DIRECTORY include/ -- DESTINATION include -+ DESTINATION ${CMAKE_INSTALL_INCLUDEDIR} - FILES_MATCHING - PATTERN "*.h" - PATTERN ".svn" EXCLUDE - ) - - install(DIRECTORY ${POLLY_BINARY_DIR}/include/ -- DESTINATION include -+ DESTINATION ${CMAKE_INSTALL_INCLUDEDIR} - FILES_MATCHING - PATTERN "*.h" - PATTERN "CMakeFiles" EXCLUDE -diff --git a/tools/polly/cmake/CMakeLists.txt b/tools/polly/cmake/CMakeLists.txt -index 211f95512717..f9e04a4844b6 100644 ---- a/tools/polly/cmake/CMakeLists.txt -+++ b/tools/polly/cmake/CMakeLists.txt -@@ -79,18 +79,18 @@ file(GENERATE - - # Generate PollyConfig.cmake for the install tree. - unset(POLLY_EXPORTS) --set(POLLY_INSTALL_PREFIX "${CMAKE_INSTALL_PREFIX}") -+set(POLLY_INSTALL_PREFIX "") - set(POLLY_CONFIG_LLVM_CMAKE_DIR "${LLVM_BINARY_DIR}/${LLVM_INSTALL_PACKAGE_DIR}") --set(POLLY_CONFIG_CMAKE_DIR "${POLLY_INSTALL_PREFIX}/${POLLY_INSTALL_PACKAGE_DIR}") --set(POLLY_CONFIG_LIBRARY_DIRS "${POLLY_INSTALL_PREFIX}/lib${LLVM_LIBDIR_SUFFIX}") -+set(POLLY_CONFIG_CMAKE_DIR "${POLLY_INSTALL_PREFIX}${CMAKE_INSTALL_PREFIX}/${POLLY_INSTALL_PACKAGE_DIR}") -+set(POLLY_CONFIG_LIBRARY_DIRS "${POLLY_INSTALL_PREFIX}${CMAKE_INSTALL_FULL_LIBDIR}${LLVM_LIBDIR_SUFFIX}") - if (POLLY_BUNDLED_ISL) - set(POLLY_CONFIG_INCLUDE_DIRS -- "${POLLY_INSTALL_PREFIX}/include" -- "${POLLY_INSTALL_PREFIX}/include/polly" -+ "${POLLY_INSTALL_PREFIX}${CMAKE_INSTALL_FULL_LIBDIR}" -+ "${POLLY_INSTALL_PREFIX}${CMAKE_INSTALL_FULL_LIBDIR}/polly" - ) - else() - set(POLLY_CONFIG_INCLUDE_DIRS -- "${POLLY_INSTALL_PREFIX}/include" -+ "${POLLY_INSTALL_PREFIX}${CMAKE_INSTALL_FULL_INCLUDEDIR}" - ${ISL_INCLUDE_DIRS} - ) - endif() -@@ -100,12 +100,12 @@ endif() - foreach(tgt IN LISTS POLLY_CONFIG_EXPORTED_TARGETS) - get_target_property(tgt_type ${tgt} TYPE) - if (tgt_type STREQUAL "EXECUTABLE") -- set(tgt_prefix "bin/") -+ set(tgt_prefix "${CMAKE_INSTALL_BINDIR}/") - else() -- set(tgt_prefix "lib/") -+ set(tgt_prefix "${CMAKE_INSTALL_LIBDIR}/") - endif() - -- set(tgt_path "${CMAKE_INSTALL_PREFIX}/${tgt_prefix}$<TARGET_FILE_NAME:${tgt}>") -+ set(tgt_path "${tgt_prefix}$<TARGET_FILE_NAME:${tgt}>") - file(RELATIVE_PATH tgt_path ${POLLY_CONFIG_CMAKE_DIR} ${tgt_path}) - - if (NOT tgt_type STREQUAL "INTERFACE_LIBRARY") -diff --git a/tools/polly/cmake/polly_macros.cmake b/tools/polly/cmake/polly_macros.cmake -index e48203871884..5bc8a2a52541 100644 ---- a/tools/polly/cmake/polly_macros.cmake -+++ b/tools/polly/cmake/polly_macros.cmake -@@ -44,8 +44,8 @@ macro(add_polly_library name) - if (NOT LLVM_INSTALL_TOOLCHAIN_ONLY OR ${name} STREQUAL "LLVMPolly") - install(TARGETS ${name} - EXPORT LLVMExports -- LIBRARY DESTINATION lib${LLVM_LIBDIR_SUFFIX} -- ARCHIVE DESTINATION lib${LLVM_LIBDIR_SUFFIX}) -+ LIBRARY DESTINATION ${CMAKE_INSTALL_LIBDIR}${LLVM_LIBDIR_SUFFIX} -+ ARCHIVE DESTINATION ${CMAKE_INSTALL_LIBDIR}${LLVM_LIBDIR_SUFFIX}) - endif() - set_property(GLOBAL APPEND PROPERTY LLVM_EXPORTS ${name}) - endmacro(add_polly_library) -diff --git a/tools/polly/lib/External/CMakeLists.txt b/tools/polly/lib/External/CMakeLists.txt -index 8ffd984e542b..261cc19f3238 100644 ---- a/tools/polly/lib/External/CMakeLists.txt -+++ b/tools/polly/lib/External/CMakeLists.txt -@@ -274,7 +274,7 @@ if (POLLY_BUNDLED_ISL) - install(DIRECTORY - ${ISL_SOURCE_DIR}/include/ - ${ISL_BINARY_DIR}/include/ -- DESTINATION include/polly -+ DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}/polly - FILES_MATCHING - PATTERN "*.h" - PATTERN "CMakeFiles" EXCLUDE diff --git a/pkgs/development/compilers/llvm/8/llvm/gnu-install-dirs.patch b/pkgs/development/compilers/llvm/8/llvm/gnu-install-dirs.patch deleted file mode 100644 index 027e43f7caca4..0000000000000 --- a/pkgs/development/compilers/llvm/8/llvm/gnu-install-dirs.patch +++ /dev/null @@ -1,394 +0,0 @@ -diff --git a/CMakeLists.txt b/CMakeLists.txt -index 81c2bab39ec9..075e68be6125 100644 ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -251,15 +251,21 @@ if (CMAKE_BUILD_TYPE AND - message(FATAL_ERROR "Invalid value for CMAKE_BUILD_TYPE: ${CMAKE_BUILD_TYPE}") - endif() - -+include(GNUInstallDirs) -+ - set(LLVM_LIBDIR_SUFFIX "" CACHE STRING "Define suffix of library directory name (32/64)" ) - --set(LLVM_TOOLS_INSTALL_DIR "bin" CACHE STRING "Path for binary subdirectory (defaults to 'bin')") -+set(LLVM_TOOLS_INSTALL_DIR "${CMAKE_INSTALL_BINDIR}" CACHE STRING -+ "Path for binary subdirectory (defaults to 'bin')") - mark_as_advanced(LLVM_TOOLS_INSTALL_DIR) - - set(LLVM_UTILS_INSTALL_DIR "${LLVM_TOOLS_INSTALL_DIR}" CACHE STRING - "Path to install LLVM utilities (enabled by LLVM_INSTALL_UTILS=ON) (defaults to LLVM_TOOLS_INSTALL_DIR)") - mark_as_advanced(LLVM_UTILS_INSTALL_DIR) - -+set(LLVM_INSTALL_CMAKE_DIR "${CMAKE_INSTALL_LIBDIR}${LLVM_LIBDIR_SUFFIX}/cmake/llvm" CACHE STRING -+ "Path for CMake subdirectory (defaults to lib/cmake/llvm)" ) -+ - # They are used as destination of target generators. - set(LLVM_RUNTIME_OUTPUT_INTDIR ${CMAKE_CURRENT_BINARY_DIR}/${CMAKE_CFG_INTDIR}/bin) - set(LLVM_LIBRARY_OUTPUT_INTDIR ${CMAKE_CURRENT_BINARY_DIR}/${CMAKE_CFG_INTDIR}/lib${LLVM_LIBDIR_SUFFIX}) -@@ -517,9 +523,9 @@ option (LLVM_ENABLE_SPHINX "Use Sphinx to generate llvm documentation." OFF) - option (LLVM_ENABLE_OCAMLDOC "Build OCaml bindings documentation." ON) - option (LLVM_ENABLE_BINDINGS "Build bindings." ON) - --set(LLVM_INSTALL_DOXYGEN_HTML_DIR "share/doc/llvm/doxygen-html" -+set(LLVM_INSTALL_DOXYGEN_HTML_DIR "${CMAKE_INSTALL_DOCDIR}/${project}/doxygen-html" - CACHE STRING "Doxygen-generated HTML documentation install directory") --set(LLVM_INSTALL_OCAMLDOC_HTML_DIR "share/doc/llvm/ocaml-html" -+set(LLVM_INSTALL_OCAMLDOC_HTML_DIR "${CMAKE_INSTALL_DOCDIR}/${project}/ocaml-html" - CACHE STRING "OCamldoc-generated HTML documentation install directory") - - option (LLVM_BUILD_EXTERNAL_COMPILER_RT -@@ -956,7 +962,7 @@ endif() - - if (NOT LLVM_INSTALL_TOOLCHAIN_ONLY) - install(DIRECTORY include/llvm include/llvm-c -- DESTINATION include -+ DESTINATION ${CMAKE_INSTALL_INCLUDEDIR} - COMPONENT llvm-headers - FILES_MATCHING - PATTERN "*.def" -@@ -968,7 +974,7 @@ if (NOT LLVM_INSTALL_TOOLCHAIN_ONLY) - ) - - install(DIRECTORY ${LLVM_INCLUDE_DIR}/llvm ${LLVM_INCLUDE_DIR}/llvm-c -- DESTINATION include -+ DESTINATION ${CMAKE_INSTALL_INCLUDEDIR} - COMPONENT llvm-headers - FILES_MATCHING - PATTERN "*.def" -@@ -983,13 +989,13 @@ if (NOT LLVM_INSTALL_TOOLCHAIN_ONLY) - - if (LLVM_INSTALL_MODULEMAPS) - install(DIRECTORY include/llvm include/llvm-c -- DESTINATION include -+ DESTINATION ${CMAKE_INSTALL_INCLUDEDIR} - COMPONENT llvm-headers - FILES_MATCHING - PATTERN "module.modulemap" - ) - install(FILES include/llvm/module.install.modulemap -- DESTINATION include/llvm -+ DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}/llvm - COMPONENT llvm-headers - RENAME "module.extern.modulemap" - ) -diff --git a/cmake/modules/AddLLVM.cmake b/cmake/modules/AddLLVM.cmake -index 1a417447278b..0c2aef338078 100644 ---- a/cmake/modules/AddLLVM.cmake -+++ b/cmake/modules/AddLLVM.cmake -@@ -646,11 +646,11 @@ macro(add_llvm_library name) - if (NOT LLVM_INSTALL_TOOLCHAIN_ONLY OR ${name} STREQUAL "LTO" OR - ${name} STREQUAL "OptRemarks" OR - (LLVM_LINK_LLVM_DYLIB AND ${name} STREQUAL "LLVM")) -- set(install_dir lib${LLVM_LIBDIR_SUFFIX}) -+ set(install_dir ${CMAKE_INSTALL_LIBDIR}${LLVM_LIBDIR_SUFFIX}) - if(ARG_MODULE OR ARG_SHARED OR BUILD_SHARED_LIBS) - if(WIN32 OR CYGWIN OR MINGW) - set(install_type RUNTIME) -- set(install_dir bin) -+ set(install_dir ${CMAKE_INSTALL_BINDIR}) - else() - set(install_type LIBRARY) - endif() -@@ -898,7 +898,7 @@ macro(add_llvm_example name) - endif() - add_llvm_executable(${name} ${ARGN}) - if( LLVM_BUILD_EXAMPLES ) -- install(TARGETS ${name} RUNTIME DESTINATION examples) -+ install(TARGETS ${name} RUNTIME DESTINATION ${CMAKE_INSTALL_DOCDIR}/examples) - endif() - set_target_properties(${name} PROPERTIES FOLDER "Examples") - endmacro(add_llvm_example name) -@@ -1442,7 +1442,7 @@ function(llvm_install_library_symlink name dest type) - set(full_name ${CMAKE_${type}_LIBRARY_PREFIX}${name}${CMAKE_${type}_LIBRARY_SUFFIX}) - set(full_dest ${CMAKE_${type}_LIBRARY_PREFIX}${dest}${CMAKE_${type}_LIBRARY_SUFFIX}) - -- set(output_dir lib${LLVM_LIBDIR_SUFFIX}) -+ set(output_dir ${CMAKE_INSTALL_FULL_LIBDIR}${LLVM_LIBDIR_SUFFIX}) - if(WIN32 AND "${type}" STREQUAL "SHARED") - set(output_dir bin) - endif() -@@ -1458,7 +1458,7 @@ function(llvm_install_library_symlink name dest type) - endif() - endfunction() - --function(llvm_install_symlink name dest) -+function(llvm_install_symlink name dest output_dir) - cmake_parse_arguments(ARG "ALWAYS_GENERATE" "COMPONENT" "" ${ARGN}) - foreach(path ${CMAKE_MODULE_PATH}) - if(EXISTS ${path}/LLVMInstallSymlink.cmake) -@@ -1481,7 +1481,7 @@ function(llvm_install_symlink name dest) - set(full_dest ${dest}${CMAKE_EXECUTABLE_SUFFIX}) - - install(SCRIPT ${INSTALL_SYMLINK} -- CODE "install_symlink(${full_name} ${full_dest} ${LLVM_TOOLS_INSTALL_DIR})" -+ CODE "install_symlink(${full_name} ${full_dest} ${output_dir})" - COMPONENT ${component}) - - if (NOT LLVM_ENABLE_IDE AND NOT ARG_ALWAYS_GENERATE) -@@ -1563,7 +1563,8 @@ function(add_llvm_tool_symlink link_name target) - endif() - - if ((TOOL_IS_TOOLCHAIN OR NOT LLVM_INSTALL_TOOLCHAIN_ONLY) AND LLVM_BUILD_TOOLS) -- llvm_install_symlink(${link_name} ${target}) -+ GNUInstallDirs_get_absolute_install_dir(output_dir LLVM_TOOLS_INSTALL_DIR) -+ llvm_install_symlink(${link_name} ${target} ${output_dir}) - endif() - endif() - endfunction() -@@ -1670,9 +1671,9 @@ function(llvm_setup_rpath name) - - if (APPLE) - set(_install_name_dir INSTALL_NAME_DIR "@rpath") -- set(_install_rpath "@loader_path/../lib" ${extra_libdir}) -+ set(_install_rpath "@loader_path/../${CMAKE_INSTALL_LIBDIR}" ${extra_libdir}) - elseif(UNIX) -- set(_install_rpath "\$ORIGIN/../lib${LLVM_LIBDIR_SUFFIX}" ${extra_libdir}) -+ set(_install_rpath "\$ORIGIN/../${CMAKE_INSTALL_LIBDIR}${LLVM_LIBDIR_SUFFIX}" ${extra_libdir}) - if(${CMAKE_SYSTEM_NAME} MATCHES "(FreeBSD|DragonFly)") - set_property(TARGET ${name} APPEND_STRING PROPERTY - LINK_FLAGS " -Wl,-z,origin ") -diff --git a/cmake/modules/AddOCaml.cmake b/cmake/modules/AddOCaml.cmake -index 02bab6846376..eff26adb2efc 100644 ---- a/cmake/modules/AddOCaml.cmake -+++ b/cmake/modules/AddOCaml.cmake -@@ -140,9 +140,9 @@ function(add_ocaml_library name) - endforeach() - - if( APPLE ) -- set(ocaml_rpath "@executable_path/../../../lib${LLVM_LIBDIR_SUFFIX}") -+ set(ocaml_rpath "@executable_path/../../../${CMAKE_INSTALL_LIBDIR}${LLVM_LIBDIR_SUFFIX}") - elseif( UNIX ) -- set(ocaml_rpath "\\$ORIGIN/../../../lib${LLVM_LIBDIR_SUFFIX}") -+ set(ocaml_rpath "\\$ORIGIN/../../../${CMAKE_INSTALL_LIBDIR}${LLVM_LIBDIR_SUFFIX}") - endif() - list(APPEND ocaml_flags "-ldopt" "-Wl,-rpath,${ocaml_rpath}") - -diff --git a/cmake/modules/AddSphinxTarget.cmake b/cmake/modules/AddSphinxTarget.cmake -index 22e3dcb776aa..ba77b9c195e2 100644 ---- a/cmake/modules/AddSphinxTarget.cmake -+++ b/cmake/modules/AddSphinxTarget.cmake -@@ -73,7 +73,7 @@ function (add_sphinx_target builder project) - - elseif (builder STREQUAL html) - string(TOUPPER "${project}" project_upper) -- set(${project_upper}_INSTALL_SPHINX_HTML_DIR "share/doc/${project}/html" -+ set(${project_upper}_INSTALL_SPHINX_HTML_DIR "${CMAKE_INSTALL_DOCDIR}/${project}/html" - CACHE STRING "HTML documentation install directory for ${project}") - - # '/.' indicates: copy the contents of the directory directly into -diff --git a/cmake/modules/CMakeLists.txt b/cmake/modules/CMakeLists.txt -index f5cc0006fa06..77698aeaf000 100644 ---- a/cmake/modules/CMakeLists.txt -+++ b/cmake/modules/CMakeLists.txt -@@ -1,4 +1,4 @@ --set(LLVM_INSTALL_PACKAGE_DIR lib${LLVM_LIBDIR_SUFFIX}/cmake/llvm) -+set(LLVM_INSTALL_PACKAGE_DIR ${LLVM_INSTALL_CMAKE_DIR} CACHE STRING "Path for CMake subdirectory (defaults to 'cmake/llvm')") - set(llvm_cmake_builddir "${LLVM_BINARY_DIR}/${LLVM_INSTALL_PACKAGE_DIR}") - - # First for users who use an installed LLVM, create the LLVMExports.cmake file. -@@ -90,11 +90,11 @@ foreach(p ${_count}) - set(LLVM_CONFIG_CODE "${LLVM_CONFIG_CODE} - get_filename_component(LLVM_INSTALL_PREFIX \"\${LLVM_INSTALL_PREFIX}\" PATH)") - endforeach(p) --set(LLVM_CONFIG_INCLUDE_DIRS "\${LLVM_INSTALL_PREFIX}/include") --set(LLVM_CONFIG_LIBRARY_DIRS "\${LLVM_INSTALL_PREFIX}/lib\${LLVM_LIBDIR_SUFFIX}") -+set(LLVM_CONFIG_INCLUDE_DIRS "\${LLVM_INSTALL_PREFIX}/${CMAKE_INSTALL_INCLUDEDIR}") -+set(LLVM_CONFIG_LIBRARY_DIRS "\${LLVM_INSTALL_PREFIX}/${CMAKE_INSTALL_LIBDIR}\${LLVM_LIBDIR_SUFFIX}") - set(LLVM_CONFIG_CMAKE_DIR "\${LLVM_INSTALL_PREFIX}/${LLVM_INSTALL_PACKAGE_DIR}") - set(LLVM_CONFIG_BINARY_DIR "\${LLVM_INSTALL_PREFIX}") --set(LLVM_CONFIG_TOOLS_BINARY_DIR "\${LLVM_INSTALL_PREFIX}/bin") -+set(LLVM_CONFIG_TOOLS_BINARY_DIR "\${LLVM_INSTALL_PREFIX}/${CMAKE_INSTALL_BINDIR}") - set(LLVM_CONFIG_EXPORTS_FILE "\${LLVM_CMAKE_DIR}/LLVMExports.cmake") - set(LLVM_CONFIG_EXPORTS "${LLVM_EXPORTS}") - configure_file( -diff --git a/cmake/modules/LLVMInstallSymlink.cmake b/cmake/modules/LLVMInstallSymlink.cmake -index 1a04de931ff7..1c5ea4200635 100644 ---- a/cmake/modules/LLVMInstallSymlink.cmake -+++ b/cmake/modules/LLVMInstallSymlink.cmake -@@ -10,7 +10,7 @@ function(install_symlink name target outdir) - set(LINK_OR_COPY copy) - endif() - -- set(bindir "${DESTDIR}${CMAKE_INSTALL_PREFIX}/${outdir}/") -+ set(bindir "${DESTDIR}${outdir}/") - - message("Creating ${name}") - -diff --git a/docs/CMake.rst b/docs/CMake.rst -index eb219c58560b..6f32532f8ebf 100644 ---- a/docs/CMake.rst -+++ b/docs/CMake.rst -@@ -196,7 +196,7 @@ CMake manual, or execute ``cmake --help-variable VARIABLE_NAME``. - **LLVM_LIBDIR_SUFFIX**:STRING - Extra suffix to append to the directory where libraries are to be - installed. On a 64-bit architecture, one could use ``-DLLVM_LIBDIR_SUFFIX=64`` -- to install libraries to ``/usr/lib64``. -+ to install libraries to ``/usr/lib64``. See also ``CMAKE_INSTALL_LIBDIR``. - - **CMAKE_C_FLAGS**:STRING - Extra flags to use when compiling C source files. -@@ -479,8 +479,8 @@ LLVM-specific variables - - **LLVM_INSTALL_DOXYGEN_HTML_DIR**:STRING - The path to install Doxygen-generated HTML documentation to. This path can -- either be absolute or relative to the CMAKE_INSTALL_PREFIX. Defaults to -- `share/doc/llvm/doxygen-html`. -+ either be absolute or relative to the ``CMAKE_INSTALL_PREFIX``. Defaults to -+ `${CMAKE_INSTALL_DOCDIR}/${project}/doxygen-html`. - - **LLVM_ENABLE_SPHINX**:BOOL - If specified, CMake will search for the ``sphinx-build`` executable and will make -@@ -511,13 +511,33 @@ LLVM-specific variables - - **LLVM_INSTALL_SPHINX_HTML_DIR**:STRING - The path to install Sphinx-generated HTML documentation to. This path can -- either be absolute or relative to the CMAKE_INSTALL_PREFIX. Defaults to -- `share/doc/llvm/html`. -+ either be absolute or relative to the ``CMAKE_INSTALL_PREFIX``. Defaults to -+ `${CMAKE_INSTALL_DOCDIR}/${project}/html`. - - **LLVM_INSTALL_OCAMLDOC_HTML_DIR**:STRING - The path to install OCamldoc-generated HTML documentation to. This path can -- either be absolute or relative to the CMAKE_INSTALL_PREFIX. Defaults to -- `share/doc/llvm/ocaml-html`. -+ either be absolute or relative to the ``CMAKE_INSTALL_PREFIX``. Defaults to -+ `${CMAKE_INSTALL_DOCDIR}/${project}/ocaml-html`. -+ -+**CMAKE_INSTALL_BINDIR**:STRING -+ The path to install binary tools, relative to the ``CMAKE_INSTALL_PREFIX``. -+ Defaults to `bin`. -+ -+**CMAKE_INSTALL_LIBDIR**:STRING -+ The path to install libraries, relative to the ``CMAKE_INSTALL_PREFIX``. -+ Defaults to `lib`. -+ -+**CMAKE_INSTALL_INCLUDEDIR**:STRING -+ The path to install header files, relative to the ``CMAKE_INSTALL_PREFIX``. -+ Defaults to `include`. -+ -+**CMAKE_INSTALL_DOCDIR**:STRING -+ The path to install documentation, relative to the ``CMAKE_INSTALL_PREFIX``. -+ Defaults to `share/doc`. -+ -+**CMAKE_INSTALL_MANDIR**:STRING -+ The path to install manpage files, relative to the ``CMAKE_INSTALL_PREFIX``. -+ Defaults to `share/man`. - - **LLVM_CREATE_XCODE_TOOLCHAIN**:BOOL - OS X Only: If enabled CMake will generate a target named -@@ -691,9 +711,11 @@ the ``cmake`` command or by setting it directly in ``ccmake`` or ``cmake-gui``). - - This file is available in two different locations. - --* ``<INSTALL_PREFIX>/lib/cmake/llvm/LLVMConfig.cmake`` where -- ``<INSTALL_PREFIX>`` is the install prefix of an installed version of LLVM. -- On Linux typically this is ``/usr/lib/cmake/llvm/LLVMConfig.cmake``. -+* ``<LLVM_INSTALL_PACKAGE_DIR>LLVMConfig.cmake`` where -+ ``<LLVM_INSTALL_PACKAGE_DIR>`` is the location where LLVM CMake modules are -+ installed as part of an installed version of LLVM. This is typically -+ ``cmake/llvm/`` within the lib directory. On Linux, this is typically -+ ``/usr/lib/cmake/llvm/LLVMConfig.cmake``. - - * ``<LLVM_BUILD_ROOT>/lib/cmake/llvm/LLVMConfig.cmake`` where - ``<LLVM_BUILD_ROOT>`` is the root of the LLVM build tree. **Note: this is only -diff --git a/include/llvm/CMakeLists.txt b/include/llvm/CMakeLists.txt -index 1d5ca3ba92b0..026f5453c1da 100644 ---- a/include/llvm/CMakeLists.txt -+++ b/include/llvm/CMakeLists.txt -@@ -4,5 +4,5 @@ add_subdirectory(Support) - # If we're doing an out-of-tree build, copy a module map for generated - # header files into the build area. - if (NOT "${CMAKE_SOURCE_DIR}" STREQUAL "${CMAKE_BINARY_DIR}") -- configure_file(module.modulemap.build module.modulemap COPYONLY) -+ configure_file(module.modulemap.build ${LLVM_INCLUDE_DIR}/module.modulemap COPYONLY) - endif (NOT "${CMAKE_SOURCE_DIR}" STREQUAL "${CMAKE_BINARY_DIR}") -diff --git a/tools/llvm-config/BuildVariables.inc.in b/tools/llvm-config/BuildVariables.inc.in -index f201e1f7bff0..4582ed556a02 100644 ---- a/tools/llvm-config/BuildVariables.inc.in -+++ b/tools/llvm-config/BuildVariables.inc.in -@@ -24,6 +24,10 @@ - #define LLVM_CXXFLAGS "@LLVM_CXXFLAGS@" - #define LLVM_BUILDMODE "@LLVM_BUILDMODE@" - #define LLVM_LIBDIR_SUFFIX "@LLVM_LIBDIR_SUFFIX@" -+#define LLVM_INSTALL_BINDIR "@CMAKE_INSTALL_BINDIR@" -+#define LLVM_INSTALL_LIBDIR "@CMAKE_INSTALL_LIBDIR@" -+#define LLVM_INSTALL_INCLUDEDIR "@CMAKE_INSTALL_INCLUDEDIR@" -+#define LLVM_INSTALL_CMAKEDIR "@LLVM_INSTALL_CMAKE_DIR@" - #define LLVM_TARGETS_BUILT "@LLVM_TARGETS_BUILT@" - #define LLVM_SYSTEM_LIBS "@LLVM_SYSTEM_LIBS@" - #define LLVM_BUILD_SYSTEM "@LLVM_BUILD_SYSTEM@" -diff --git a/tools/llvm-config/llvm-config.cpp b/tools/llvm-config/llvm-config.cpp -index bec89fef98ca..31d78f925d45 100644 ---- a/tools/llvm-config/llvm-config.cpp -+++ b/tools/llvm-config/llvm-config.cpp -@@ -333,12 +333,26 @@ int main(int argc, char **argv) { - ("-I" + ActiveIncludeDir + " " + "-I" + ActiveObjRoot + "/include"); - } else { - ActivePrefix = CurrentExecPrefix; -- ActiveIncludeDir = ActivePrefix + "/include"; -- SmallString<256> path(StringRef(LLVM_TOOLS_INSTALL_DIR)); -- sys::fs::make_absolute(ActivePrefix, path); -- ActiveBinDir = path.str(); -- ActiveLibDir = ActivePrefix + "/lib" + LLVM_LIBDIR_SUFFIX; -- ActiveCMakeDir = ActiveLibDir + "/cmake/llvm"; -+ { -+ SmallString<256> path(StringRef(LLVM_INSTALL_INCLUDEDIR)); -+ sys::fs::make_absolute(ActivePrefix, path); -+ ActiveIncludeDir = std::string(path.str()); -+ } -+ { -+ SmallString<256> path(StringRef(LLVM_INSTALL_BINDIR)); -+ sys::fs::make_absolute(ActivePrefix, path); -+ ActiveBinDir = std::string(path.str()); -+ } -+ { -+ SmallString<256> path(StringRef(LLVM_INSTALL_LIBDIR LLVM_LIBDIR_SUFFIX)); -+ sys::fs::make_absolute(ActivePrefix, path); -+ ActiveLibDir = std::string(path.str()); -+ } -+ { -+ SmallString<256> path(StringRef(LLVM_INSTALL_CMAKEDIR)); -+ sys::fs::make_absolute(ActivePrefix, path); -+ ActiveCMakeDir = std::string(path.str()); -+ } - ActiveIncludeOption = "-I" + ActiveIncludeDir; - } - -diff --git a/tools/lto/CMakeLists.txt b/tools/lto/CMakeLists.txt -index 6e913519a809..85641eef721f 100644 ---- a/tools/lto/CMakeLists.txt -+++ b/tools/lto/CMakeLists.txt -@@ -19,7 +19,7 @@ set(LLVM_EXPORTED_SYMBOL_FILE ${CMAKE_CURRENT_SOURCE_DIR}/lto.exports) - add_llvm_library(LTO SHARED ${SOURCES} DEPENDS intrinsics_gen) - - install(FILES ${LLVM_MAIN_INCLUDE_DIR}/llvm-c/lto.h -- DESTINATION include/llvm-c -+ DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}/llvm-c - COMPONENT LTO) - - if (APPLE) -diff --git a/tools/opt-remarks/CMakeLists.txt b/tools/opt-remarks/CMakeLists.txt -index a87beae1e893..149ea3d10168 100644 ---- a/tools/opt-remarks/CMakeLists.txt -+++ b/tools/opt-remarks/CMakeLists.txt -@@ -11,7 +11,7 @@ set(LLVM_EXPORTED_SYMBOL_FILE ${CMAKE_CURRENT_SOURCE_DIR}/OptRemarks.exports) - add_llvm_library(OptRemarks SHARED ${SOURCES}) - - install(FILES ${LLVM_MAIN_INCLUDE_DIR}/llvm-c/OptRemarks.h -- DESTINATION include/llvm-c -+ DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}/llvm-c - COMPONENT OptRemarks) - - if (APPLE) -diff --git a/tools/opt-viewer/CMakeLists.txt b/tools/opt-viewer/CMakeLists.txt -index 19b606933082..27b9f71b3d79 100644 ---- a/tools/opt-viewer/CMakeLists.txt -+++ b/tools/opt-viewer/CMakeLists.txt -@@ -8,6 +8,6 @@ set (files - - foreach (file ${files}) - install(PROGRAMS ${file} -- DESTINATION share/opt-viewer -+ DESTINATION ${CMAKE_INSTALL_DATADIR}/opt-viewer - COMPONENT opt-viewer) - endforeach (file) diff --git a/pkgs/development/compilers/llvm/8/openmp/default.nix b/pkgs/development/compilers/llvm/8/openmp/default.nix deleted file mode 100644 index 32b564ff0ecf6..0000000000000 --- a/pkgs/development/compilers/llvm/8/openmp/default.nix +++ /dev/null @@ -1,37 +0,0 @@ -{ lib -, stdenv -, llvm_meta -, fetch -, cmake -, llvm -, targetLlvm -, perl -, version -}: - -stdenv.mkDerivation { - pname = "openmp"; - inherit version; - - src = fetch "openmp" "0b3jlxhqbpyd1nqkpxjfggm5d9va5qpyf7d4i5y7n4a1mlydv19y"; - - nativeBuildInputs = [ cmake perl ]; - buildInputs = [ - (if stdenv.buildPlatform == stdenv.hostPlatform then llvm else targetLlvm) - ]; - - meta = llvm_meta // { - homepage = "https://openmp.llvm.org/"; - description = "Support for the OpenMP language"; - longDescription = '' - The OpenMP subproject of LLVM contains the components required to build an - executable OpenMP program that are outside the compiler itself. - Contains the code for the runtime library against which code compiled by - "clang -fopenmp" must be linked before it can run and the library that - supports offload to target devices. - ''; - # "All of the code is dual licensed under the MIT license and the UIUC - # License (a BSD-like license)": - license = with lib.licenses; [ mit ncsa ]; - }; -} diff --git a/pkgs/development/compilers/llvm/9/compiler-rt/default.nix b/pkgs/development/compilers/llvm/9/compiler-rt/default.nix index d03fcbc7f7084..4dddbc67d7cb4 100644 --- a/pkgs/development/compilers/llvm/9/compiler-rt/default.nix +++ b/pkgs/development/compilers/llvm/9/compiler-rt/default.nix @@ -115,6 +115,9 @@ stdenv.mkDerivation { # "All of the code in the compiler-rt project is dual licensed under the MIT # license and the UIUC License (a BSD-like license)": license = with lib.licenses; [ mit ncsa ]; - broken = stdenv.hostPlatform.isDarwin && stdenv.hostPlatform.isAarch64; + broken = stdenv.hostPlatform.system == "aarch64-darwin" + # compiler-rt requires a Clang stdenv on 32-bit RISC-V: + # https://reviews.llvm.org/D43106#1019077 + || (stdenv.hostPlatform.isRiscV32 && !stdenv.cc.isClang); }; } diff --git a/pkgs/development/compilers/llvm/9/default.nix b/pkgs/development/compilers/llvm/9/default.nix index fbd2e57805be2..a6274c8b2b9c0 100644 --- a/pkgs/development/compilers/llvm/9/default.nix +++ b/pkgs/development/compilers/llvm/9/default.nix @@ -161,6 +161,7 @@ let echo "-B${targetLlvmLibraries.compiler-rt}/lib" >> $out/nix-support/cc-cflags '' + lib.optionalString (!stdenv.targetPlatform.isWasm) '' echo "--unwindlib=libunwind" >> $out/nix-support/cc-cflags + echo "-L${targetLlvmLibraries.libunwind}/lib" >> $out/nix-support/cc-ldflags '' + lib.optionalString (!stdenv.targetPlatform.isWasm && stdenv.targetPlatform.useLLVM or false) '' echo "-lunwind" >> $out/nix-support/cc-ldflags '' + lib.optionalString stdenv.targetPlatform.isWasm '' diff --git a/pkgs/development/compilers/llvm/9/llvm/default.nix b/pkgs/development/compilers/llvm/9/llvm/default.nix index 75c7868559734..c0ef7801c348a 100644 --- a/pkgs/development/compilers/llvm/9/llvm/default.nix +++ b/pkgs/development/compilers/llvm/9/llvm/default.nix @@ -237,7 +237,7 @@ in stdenv.mkDerivation (rec { ] ++ optionals (isDarwin) [ "-DLLVM_ENABLE_LIBCXX=ON" "-DCAN_TARGET_i386=false" - ] ++ optionals (stdenv.hostPlatform != stdenv.buildPlatform) [ + ] ++ optionals ((stdenv.hostPlatform != stdenv.buildPlatform) && !(stdenv.buildPlatform.canExecute stdenv.hostPlatform)) [ "-DCMAKE_CROSSCOMPILING=True" "-DLLVM_TABLEGEN=${buildLlvmTools.llvm}/bin/llvm-tblgen" ( diff --git a/pkgs/development/compilers/llvm/git/compiler-rt/default.nix b/pkgs/development/compilers/llvm/git/compiler-rt/default.nix index 808df140e772d..0f15a9e12cde5 100644 --- a/pkgs/development/compilers/llvm/git/compiler-rt/default.nix +++ b/pkgs/development/compilers/llvm/git/compiler-rt/default.nix @@ -152,5 +152,8 @@ stdenv.mkDerivation { # "All of the code in the compiler-rt project is dual licensed under the MIT # license and the UIUC License (a BSD-like license)": license = with lib.licenses; [ mit ncsa ]; + # compiler-rt requires a Clang stdenv on 32-bit RISC-V: + # https://reviews.llvm.org/D43106#1019077 + broken = stdenv.hostPlatform.isRiscV32 && !stdenv.cc.isClang; }; } diff --git a/pkgs/development/compilers/llvm/git/default.nix b/pkgs/development/compilers/llvm/git/default.nix index 41ce6076da5f3..efa8daf5d98b9 100644 --- a/pkgs/development/compilers/llvm/git/default.nix +++ b/pkgs/development/compilers/llvm/git/default.nix @@ -216,6 +216,7 @@ in let (!stdenv.targetPlatform.isWasm && stdenv.targetPlatform.useLLVM or false) "-lunwind" ++ lib.optional stdenv.targetPlatform.isWasm "-fno-exceptions"; + nixSupport.cc-ldflags = lib.optionals (!stdenv.targetPlatform.isWasm) [ "-L${targetLlvmLibraries.libunwind}/lib" ]; }; clangNoLibcxx = wrapCCWith rec { diff --git a/pkgs/development/compilers/llvm/git/libcxx/default.nix b/pkgs/development/compilers/llvm/git/libcxx/default.nix index 7b99966416638..8a5272ea07af0 100644 --- a/pkgs/development/compilers/llvm/git/libcxx/default.nix +++ b/pkgs/development/compilers/llvm/git/libcxx/default.nix @@ -1,5 +1,5 @@ { lib, stdenv, llvm_meta -, monorepoSrc, runCommand +, monorepoSrc, runCommand, fetchpatch , cmake, ninja, python3, fixDarwinDylibNames, version , cxxabi ? if stdenv.hostPlatform.isFreeBSD then libcxxrt else libcxxabi , libcxxabi, libcxxrt, libunwind @@ -45,6 +45,17 @@ stdenv.mkDerivation rec { chmod -R u+w . ''; + patches = [ + # fix for https://github.com/NixOS/nixpkgs/issues/269548 + # https://github.com/llvm/llvm-project/pull/77218 + (fetchpatch { + name = "darwin-system-libcxxabi-link-flags.patch"; + url = "https://github.com/llvm/llvm-project/commit/c5b89b29ee6e3c444a355fd1cf733ce7ab2e316a.patch"; + hash = "sha256-LNoPg1KCoP8RWxU/AzHR52f4Dww24I9BGQJedMhFxyQ="; + relative = "libcxx"; + }) + ]; + postPatch = '' cd ../runtimes ''; diff --git a/pkgs/development/compilers/llvm/git/llvm/default.nix b/pkgs/development/compilers/llvm/git/llvm/default.nix index 36edfee8a091a..a6e9f9289d030 100644 --- a/pkgs/development/compilers/llvm/git/llvm/default.nix +++ b/pkgs/development/compilers/llvm/git/llvm/default.nix @@ -329,7 +329,7 @@ stdenv.mkDerivation (rec { ] ++ optionals isDarwin [ "-DLLVM_ENABLE_LIBCXX=ON" "-DCAN_TARGET_i386=false" - ] ++ optionals (stdenv.hostPlatform != stdenv.buildPlatform) [ + ] ++ optionals ((stdenv.hostPlatform != stdenv.buildPlatform) && !(stdenv.buildPlatform.canExecute stdenv.hostPlatform)) [ "-DCMAKE_CROSSCOMPILING=True" "-DLLVM_TABLEGEN=${buildLlvmTools.llvm}/bin/llvm-tblgen" ( diff --git a/pkgs/development/compilers/llvm/llvm-7-musl.patch b/pkgs/development/compilers/llvm/llvm-7-musl.patch deleted file mode 100644 index 0dac12cc20d62..0000000000000 --- a/pkgs/development/compilers/llvm/llvm-7-musl.patch +++ /dev/null @@ -1,92 +0,0 @@ -From 8c747d3157df2830eed9205e7caf1203b345de17 Mon Sep 17 00:00:00 2001 -From: Khem Raj <raj.khem@gmail.com> -Date: Sat, 4 Feb 2023 13:54:41 -0800 -Subject: [PATCH] cmake: Enable 64bit off_t on 32bit glibc systems - -Pass -D_FILE_OFFSET_BITS=64 to compiler flags on 32bit glibc based -systems. This will make sure that 64bit versions of LFS functions are -used e.g. seek will behave same as lseek64. Also revert [1] partially -because this added a cmake test to detect lseek64 but then forgot to -pass the needed macro to actual compile, this test was incomplete too -since libc implementations like musl has 64bit off_t by default on 32bit -systems and does not bundle[2] -D_LARGEFILE64_SOURCE under -D_GNU_SOURCE -like glibc, which means the compile now fails on musl because the cmake -check passes but we do not have _LARGEFILE64_SOURCE defined. Using the -*64 function was transitional anyways so use -D_FILE_OFFSET_BITS=64 -instead - -[1] https://github.com/llvm/llvm-project/commit/8db7e5e4eed4c4e697dc3164f2c9351d8c3e942b -[2] https://git.musl-libc.org/cgit/musl/commit/?id=25e6fee27f4a293728dd15b659170e7b9c7db9bc - -Reviewed By: MaskRay - -Differential Revision: https://reviews.llvm.org/D139752 - -(cherry picked from commit 5cd554303ead0f8891eee3cd6d25cb07f5a7bf67) ---- - cmake/config-ix.cmake | 13 ++++++++++--- - include/llvm/Config/config.h.cmake | 3 --- - lib/Support/raw_ostream.cpp | 2 -- - 3 files changed, 10 insertions(+), 8 deletions(-) - -diff --git a/cmake/config-ix.cmake b/cmake/config-ix.cmake -index 18977d9950ff..b558aa83fa62 100644 ---- a/cmake/config-ix.cmake -+++ b/cmake/config-ix.cmake -@@ -197,9 +197,6 @@ check_symbol_exists(posix_fallocate fcntl.h HAVE_POSIX_FALLOCATE) - if( HAVE_SIGNAL_H AND NOT LLVM_USE_SANITIZER MATCHES ".*Address.*" AND NOT APPLE ) - check_symbol_exists(sigaltstack signal.h HAVE_SIGALTSTACK) - endif() --set(CMAKE_REQUIRED_DEFINITIONS "-D_LARGEFILE64_SOURCE") --check_symbol_exists(lseek64 "sys/types.h;unistd.h" HAVE_LSEEK64) --set(CMAKE_REQUIRED_DEFINITIONS "") - check_symbol_exists(mallctl malloc_np.h HAVE_MALLCTL) - check_symbol_exists(mallinfo malloc.h HAVE_MALLINFO) - check_symbol_exists(malloc_zone_statistics malloc/malloc.h -@@ -237,6 +234,16 @@ if( PURE_WINDOWS ) - check_function_exists(__main HAVE___MAIN) - check_function_exists(__cmpdi2 HAVE___CMPDI2) - endif() -+ -+check_symbol_exists(__GLIBC__ stdio.h LLVM_USING_GLIBC) -+if( LLVM_USING_GLIBC ) -+# enable 64bit off_t on 32bit systems using glibc -+ if (CMAKE_SIZEOF_VOID_P EQUAL 4) -+ add_compile_definitions(_FILE_OFFSET_BITS=64) -+ list(APPEND CMAKE_REQUIRED_DEFINITIONS "-D_FILE_OFFSET_BITS=64") -+ endif() -+endif() -+ - if( HAVE_DLFCN_H ) - if( HAVE_LIBDL ) - list(APPEND CMAKE_REQUIRED_LIBRARIES dl) -diff --git a/include/llvm/Config/config.h.cmake b/include/llvm/Config/config.h.cmake -index e934617d7ec7..3c39c373b3c1 100644 ---- a/include/llvm/Config/config.h.cmake -+++ b/include/llvm/Config/config.h.cmake -@@ -112,9 +112,6 @@ - /* Define to 1 if you have the <link.h> header file. */ - #cmakedefine HAVE_LINK_H ${HAVE_LINK_H} - --/* Define to 1 if you have the `lseek64' function. */ --#cmakedefine HAVE_LSEEK64 ${HAVE_LSEEK64} -- - /* Define to 1 if you have the <mach/mach.h> header file. */ - #cmakedefine HAVE_MACH_MACH_H ${HAVE_MACH_MACH_H} - -diff --git a/lib/Support/raw_ostream.cpp b/lib/Support/raw_ostream.cpp -index 038ad00bd608..921ab8409008 100644 ---- a/lib/Support/raw_ostream.cpp -+++ b/lib/Support/raw_ostream.cpp -@@ -677,8 +677,6 @@ uint64_t raw_fd_ostream::seek(uint64_t off) { - flush(); - #ifdef _WIN32 - pos = ::_lseeki64(FD, off, SEEK_SET); --#elif defined(HAVE_LSEEK64) -- pos = ::lseek64(FD, off, SEEK_SET); - #else - pos = ::lseek(FD, off, SEEK_SET); - #endif --- -2.37.1 - diff --git a/pkgs/development/compilers/mint/default.nix b/pkgs/development/compilers/mint/default.nix index c51d6bc4fc06e..b1baf88c936c1 100644 --- a/pkgs/development/compilers/mint/default.nix +++ b/pkgs/development/compilers/mint/default.nix @@ -1,14 +1,14 @@ { lib, fetchFromGitHub, crystal, openssl }: crystal.buildCrystalPackage rec { - version = "0.15.3"; + version = "0.19.0"; pname = "mint"; src = fetchFromGitHub { owner = "mint-lang"; repo = "mint"; rev = version; - hash = "sha256-VjQ736RWP9HK0QFKbgchnEPYH/Ny2w8SI/xnO3m94B8="; + hash = "sha256-s/ehv8Z71nWnxpajO7eR4MxoHppqkdleFluv+e5Vv6I="; }; format = "shards"; diff --git a/pkgs/development/compilers/mint/shards.nix b/pkgs/development/compilers/mint/shards.nix index 49ba1ad74325a..47cd9a7791730 100644 --- a/pkgs/development/compilers/mint/shards.nix +++ b/pkgs/development/compilers/mint/shards.nix @@ -1,55 +1,51 @@ { admiral = { - owner = "jwaldrip"; - repo = "admiral.cr"; - rev = "v1.11.4"; - sha256 = "1rpybhhzz892s2dp2kzbkkn1c8c7574275ql6amhbvc6ds5j3i46"; + url = "https://github.com/jwaldrip/admiral.cr.git"; + rev = "v1.12.1"; + sha256 = "0x8v9i8ixs7xcwz35kdlqvz0pfm1cqzm6gvwdjfrps0drisk7f6i"; }; ameba = { - owner = "crystal-ameba"; - repo = "ameba"; - rev = "v0.14.2"; - sha256 = "1l1q1icpzg1zvhfj8948w36j7ikaj7w816677zi29vi6y2d1dmf2"; + url = "https://github.com/crystal-ameba/ameba.git"; + rev = "v1.5.0"; + sha256 = "1idivsbpmi40aqvs82fsv37nrgikirprxrj3ls9chsb876fq9p2d"; + }; + ansi-escapes = { + url = "https://github.com/gtramontina/ansi-escapes.cr.git"; + rev = "v1.0.0"; + sha256 = "106cy7bq0j438cfs0zqcxhj84msjj9dybxlcjr8qhs1fpm02s00b"; + }; + backtracer = { + url = "https://github.com/sija/backtracer.cr.git"; + rev = "v1.2.2"; + sha256 = "1rknyylsi14m7i77x7c3138wdw27i4f6sd78m3srw851p47bwr20"; }; baked_file_system = { - owner = "schovi"; - repo = "baked_file_system"; + url = "https://github.com/schovi/baked_file_system.git"; rev = "v0.10.0"; sha256 = "10f25sby8ipps5c2jj4j2q30kscgv4g1s5nhdddmldhg9isj0jli"; }; dotenv = { - owner = "gdotdesign"; - repo = "cr-dotenv"; + url = "https://github.com/gdotdesign/cr-dotenv.git"; rev = "v1.0.0"; sha256 = "00pdawysns1w1iqwh6j3shilpwh41ljz1chsqkacn6dj2yn21n0r"; }; exception_page = { - owner = "crystal-loot"; - repo = "exception_page"; - rev = "v0.1.5"; - sha256 = "0nlph4rmavwsndf94hisdikh3qhhkyyh97cc39mvbqzrqrc6lbx3"; + url = "https://github.com/crystal-loot/exception_page.git"; + rev = "v0.3.1"; + sha256 = "00fpkhwaf94mz9d9qiinsa7hdbs3x2yqjwwzvbjwv86dv8s5008n"; }; kemal = { - owner = "kemalcr"; - repo = "kemal"; - rev = "v1.0.0"; - sha256 = "0yy6mkqyxlgdi6svj206iprw3njrxw61y2s2wwz78yz7j6sly1wf"; - }; - kilt = { - owner = "jeromegn"; - repo = "kilt"; - rev = "v0.4.1"; - sha256 = "1bhmmk4djnysf2fr0020dakn1730a33xzi10c8lg1a343x77rm64"; + url = "https://github.com/kemalcr/kemal.git"; + rev = "v1.4.0"; + sha256 = "0pmcnbfzb0bqrnwbqikci4j0hbxsabmkz8a879vprf5gswnr7b63"; }; markd = { - owner = "icyleaf"; - repo = "markd"; - rev = "v0.4.0"; - sha256 = "0zi39ik7zqnidysafwn6icpr0gdb6z40v63bx5hablarpf2r9637"; + url = "https://github.com/icyleaf/markd.git"; + rev = "v0.5.0"; + sha256 = "1a677z57kwjq6lp4ws7br1ga8jgpgi8990glhd1r8756bdyd8mg0"; }; radix = { - owner = "luislavena"; - repo = "radix"; + url = "https://github.com/luislavena/radix.git"; rev = "v0.4.1"; sha256 = "1l08cydkdidq9yyil1wl240hvk41iycv04jrg6nx5mkvzw4z1bzg"; }; diff --git a/pkgs/development/compilers/nextpnr/default.nix b/pkgs/development/compilers/nextpnr/default.nix deleted file mode 100644 index d56f7e7163014..0000000000000 --- a/pkgs/development/compilers/nextpnr/default.nix +++ /dev/null @@ -1,92 +0,0 @@ -{ lib, stdenv, fetchFromGitHub, cmake -, boost, python3, eigen, python3Packages -, icestorm, trellis -, llvmPackages - -, enableGui ? false -, wrapQtAppsHook ? null -, qtbase ? null -, OpenGL ? null -}: - -let - boostPython = boost.override { python = python3; enablePython = true; }; - - pname = "nextpnr"; - version = "0.6"; - - main_src = fetchFromGitHub { - owner = "YosysHQ"; - repo = "nextpnr"; - rev = "${pname}-${version}"; - hash = "sha256-S6qvTzvkS2tBMvuTpmuCx6h0OcKP5NBbmgRgOpAVtnA="; - name = "nextpnr"; - }; - - test_src = fetchFromGitHub { - owner = "YosysHQ"; - repo = "nextpnr-tests"; - rev = "00c55a9eb9ea2e062b51fe0d64741412b185d95d"; - sha256 = "sha256-83suMftMtnaRFq3T2/I7Uahb11WZlXhwYt6Q/rqi2Yo="; - name = "nextpnr-tests"; - }; -in - -stdenv.mkDerivation rec { - inherit pname version; - - srcs = [ main_src test_src ]; - - sourceRoot = main_src.name; - - nativeBuildInputs - = [ cmake ] - ++ (lib.optional enableGui wrapQtAppsHook); - buildInputs - = [ boostPython python3 eigen python3Packages.apycula ] - ++ (lib.optional enableGui qtbase) - ++ (lib.optional stdenv.cc.isClang llvmPackages.openmp); - - cmakeFlags = - [ "-DCURRENT_GIT_VERSION=${lib.substring 0 7 (lib.elemAt srcs 0).rev}" - "-DARCH=generic;ice40;ecp5;gowin" - "-DBUILD_TESTS=ON" - "-DICESTORM_INSTALL_PREFIX=${icestorm}" - "-DTRELLIS_INSTALL_PREFIX=${trellis}" - "-DTRELLIS_LIBDIR=${trellis}/lib/trellis" - "-DGOWIN_BBA_EXECUTABLE=${python3Packages.apycula}/bin/gowin_bba" - "-DUSE_OPENMP=ON" - # warning: high RAM usage - "-DSERIALIZE_CHIPDBS=OFF" - ] - ++ (lib.optional enableGui "-DBUILD_GUI=ON") - ++ (lib.optional (enableGui && stdenv.isDarwin) - "-DOPENGL_INCLUDE_DIR=${OpenGL}/Library/Frameworks"); - - patchPhase = with builtins; '' - # use PyPy for icestorm if enabled - substituteInPlace ./ice40/CMakeLists.txt \ - --replace ''\'''${PYTHON_EXECUTABLE}' '${icestorm.pythonInterp}' - ''; - - preBuild = '' - ln -s ../${test_src.name} tests - ''; - - doCheck = true; - - postFixup = lib.optionalString enableGui '' - wrapQtApp $out/bin/nextpnr-generic - wrapQtApp $out/bin/nextpnr-ice40 - wrapQtApp $out/bin/nextpnr-ecp5 - wrapQtApp $out/bin/nextpnr-gowin - ''; - - meta = with lib; { - description = "Place and route tool for FPGAs"; - homepage = "https://github.com/yosyshq/nextpnr"; - license = licenses.isc; - platforms = platforms.all; - maintainers = with maintainers; [ thoughtpolice emily ]; - }; -} diff --git a/pkgs/development/compilers/odin/default.nix b/pkgs/development/compilers/odin/default.nix index 76824bc6ddc4d..19489961a0d0c 100644 --- a/pkgs/development/compilers/odin/default.nix +++ b/pkgs/development/compilers/odin/default.nix @@ -12,13 +12,13 @@ let inherit (llvmPackages) stdenv; in stdenv.mkDerivation rec { pname = "odin"; - version = "dev-2024-01"; + version = "dev-2024-02"; src = fetchFromGitHub { owner = "odin-lang"; repo = "Odin"; rev = version; - hash = "sha256-ufIpnibY7rd76l0Mh+qXYXkc8W3cuTJ1cbmj4SgSUis="; + hash = "sha256-v9A0+kgREXALhnvFYWtE0+H4L7CYnyje+d2W5+/ZvHA="; }; nativeBuildInputs = [ diff --git a/pkgs/development/compilers/open-watcom/v2.nix b/pkgs/development/compilers/open-watcom/v2.nix index 481c8dabb2d3d..80ee2ee5e45d8 100644 --- a/pkgs/development/compilers/open-watcom/v2.nix +++ b/pkgs/development/compilers/open-watcom/v2.nix @@ -13,13 +13,13 @@ stdenv.mkDerivation rec { pname = "${passthru.prettyName}-unwrapped"; # nixpkgs-update: no auto update - version = "unstable-2023-05-17"; + version = "unstable-2023-11-24"; src = fetchFromGitHub { owner = "open-watcom"; repo = "open-watcom-v2"; - rev = "4053c858ac1f83a186704434bd16b6a6b8f4cf88"; - sha256 = "sha256-o+cA5kqPow+ERCeWdA3UNKawF+EjuL87lPXUjFT/D1w="; + rev = "7976a5c7ca4e856907ccd378c17c71578ad51cb7"; + hash = "sha256-u9ljy4dZRoXKyUqdolxZijpc99TuhKPPlL6xlV3xJXA="; }; postPatch = '' @@ -47,6 +47,9 @@ stdenv.mkDerivation rec { ghostscript ]; + # Work around https://github.com/NixOS/nixpkgs/issues/166205 + env.NIX_LDFLAGS = lib.optionalString (stdenv.cc.isClang && stdenv.cc.libcxx != null) "-l${stdenv.cc.libcxx.cxxabi.libName}"; + configurePhase = '' runHook preConfigure diff --git a/pkgs/development/compilers/osl/default.nix b/pkgs/development/compilers/osl/default.nix index 2815684878379..0d66b81b6ad12 100644 --- a/pkgs/development/compilers/osl/default.nix +++ b/pkgs/development/compilers/osl/default.nix @@ -24,13 +24,13 @@ let in stdenv.mkDerivation rec { pname = "openshadinglanguage"; - version = "1.12.14.0"; + version = "1.13.6.1"; src = fetchFromGitHub { owner = "AcademySoftwareFoundation"; repo = "OpenShadingLanguage"; rev = "v${version}"; - hash = "sha256-x8t7uC4q29MkTCIS1rK0ICw78u5zZG+/zyhwttLOBr4="; + hash = "sha256-NSnM5/SyVkfZ4SyzRzVJc5O1t4/s2ax0koevRZsQ9q8="; }; cmakeFlags = [ diff --git a/pkgs/development/compilers/rust/1_75.nix b/pkgs/development/compilers/rust/1_75.nix index 829b26cac3674..2ca1e2d294bcb 100644 --- a/pkgs/development/compilers/rust/1_75.nix +++ b/pkgs/development/compilers/rust/1_75.nix @@ -10,11 +10,9 @@ # 3. Firefox and Thunderbird should still build on x86_64-linux. { stdenv, lib -, buildPackages -, targetPackages , newScope, callPackage , CoreFoundation, Security, SystemConfiguration -, pkgsBuildTarget, pkgsBuildBuild, pkgsBuildHost +, pkgsBuildTarget, pkgsBuildBuild, pkgsBuildHost, pkgsTargetTarget , makeRustPlatform , wrapRustcWith , llvmPackages_17, llvm_17 @@ -58,4 +56,4 @@ import ./default.nix { rustcPatches = [ ]; } -(builtins.removeAttrs args [ "pkgsBuildTarget" "pkgsBuildHost" "llvmPackages_17" "llvm_17"]) +(builtins.removeAttrs args [ "llvmPackages_17" "llvm_17"]) diff --git a/pkgs/development/compilers/rust/clippy.nix b/pkgs/development/compilers/rust/clippy.nix index 43a10c1c7374b..d9506a4aed301 100644 --- a/pkgs/development/compilers/rust/clippy.nix +++ b/pkgs/development/compilers/rust/clippy.nix @@ -38,6 +38,7 @@ rustPlatform.buildRustPackage { meta = with lib; { homepage = "https://rust-lang.github.io/rust-clippy/"; description = "A bunch of lints to catch common mistakes and improve your Rust code"; + mainProgram = "cargo-clippy"; maintainers = with maintainers; [ basvandijk ] ++ teams.rust.members; license = with licenses; [ mit asl20 ]; platforms = platforms.unix; diff --git a/pkgs/development/compilers/rust/default.nix b/pkgs/development/compilers/rust/default.nix index c08ffa848ef5e..31501e668c893 100644 --- a/pkgs/development/compilers/rust/default.nix +++ b/pkgs/development/compilers/rust/default.nix @@ -12,18 +12,21 @@ , llvmPackages # Exposed through rustc for LTO in Firefox }: { stdenv, lib -, buildPackages -, targetPackages , newScope, callPackage , CoreFoundation, Security, SystemConfiguration , pkgsBuildBuild +, pkgsBuildHost +, pkgsBuildTarget +, pkgsTargetTarget , makeRustPlatform , wrapRustcWith }: let # Use `import` to make sure no packages sneak in here. - lib' = import ../../../build-support/rust/lib { inherit lib stdenv buildPackages targetPackages; }; + lib' = import ../../../build-support/rust/lib { + inherit lib stdenv pkgsBuildHost pkgsBuildTarget pkgsTargetTarget; + }; # Allow faster cross compiler generation by reusing Build artifacts fastCross = (stdenv.buildPlatform == stdenv.hostPlatform) && (stdenv.hostPlatform != stdenv.targetPlatform); in @@ -58,11 +61,11 @@ in else self.buildRustPackages.overrideScope (_: _: lib.optionalAttrs (stdenv.buildPlatform == stdenv.hostPlatform) - (selectRustPackage buildPackages).packages.prebuilt); + (selectRustPackage pkgsBuildHost).packages.prebuilt); bootRustPlatform = makeRustPlatform bootstrapRustPackages; in { # Packages suitable for build-time, e.g. `build.rs`-type stuff. - buildRustPackages = (selectRustPackage buildPackages).packages.stable // { __attrsFailEvaluation = true; }; + buildRustPackages = (selectRustPackage pkgsBuildHost).packages.stable // { __attrsFailEvaluation = true; }; # Analogous to stdenv rustPlatform = makeRustPlatform self.buildRustPackages; rustc-unwrapped = self.callPackage ./rustc.nix ({ diff --git a/pkgs/development/compilers/sbcl/2.x.nix b/pkgs/development/compilers/sbcl/2.x.nix deleted file mode 100644 index f91e5147cf6a9..0000000000000 --- a/pkgs/development/compilers/sbcl/2.x.nix +++ /dev/null @@ -1,201 +0,0 @@ -{ lib, stdenv, callPackage, clisp, fetchurl, fetchpatch, writeText, zstd -, threadSupport ? (stdenv.hostPlatform.isx86 || "aarch64-linux" == stdenv.hostPlatform.system || "aarch64-darwin" == stdenv.hostPlatform.system) -, linkableRuntime ? stdenv.hostPlatform.isx86 -, disableImmobileSpace ? false - # Meant for sbcl used for creating binaries portable to non-NixOS via save-lisp-and-die. - # Note that the created binaries still need `patchelf --set-interpreter ...` - # to get rid of ${glibc} dependency. -, purgeNixReferences ? false -, coreCompression ? lib.versionAtLeast version "2.2.6" -, markRegionGC ? lib.versionAtLeast version "2.4.0" -, texinfo -, version -}: - -let - versionMap = { - # Only kept around for BCLM. Remove once unneeded there. - "2.1.9" = { - sha256 = "189gjqzdz10xh3ybiy4ch1r98bsmkcb4hpnrmggd4y2g5kqnyx4y"; - }; - - "2.3.11" = { - sha256 = "sha256-hL7rjXLIeJeEf8AoWtyz+k9IG9s5ECxPuat5aEGErSk="; - }; - "2.4.0" = { - sha256 = "sha256-g9i3TwjSJUxZuXkLwfZp4JCZRXuIRyDs7L9F9LRtF3Y="; - }; - }; - # Collection of pre-built SBCL binaries for platforms that need them for - # bootstrapping. Ideally these are to be avoided. If CLISP (or any other - # non-binary-distributed Lisp) can run on any of these systems, that entry - # should be removed from this list. - bootstrapBinaries = rec { - # This build segfaults using CLISP. - x86_64-darwin = { - version = "2.2.9"; - system = "x86-64-darwin"; - sha256 = "sha256-b1BLkoLIOELAYBYA9eBmMgm1OxMxJewzNP96C9ADfKY="; - }; - i686-linux = { - version = "1.2.7"; - system = "x86-linux"; - sha256 = "07f3bz4br280qvn85i088vpzj9wcz8wmwrf665ypqx181pz2ai3j"; - }; - armv7l-linux = { - version = "1.2.14"; - system = "armhf-linux"; - sha256 = "0sp5445rbvms6qvzhld0kwwvydw51vq5iaf4kdqsf2d9jvaz3yx5"; - }; - armv6l-linux = armv7l-linux; - x86_64-freebsd = { - version = "1.2.7"; - system = "x86-64-freebsd"; - sha256 = "14k42xiqd2rrim4pd5k5pjcrpkac09qnpynha8j1v4jngrvmw7y6"; - }; - x86_64-solaris = { - version = "1.2.7"; - system = "x86-64-solaris"; - sha256 = "05c12fmac4ha72k1ckl6i780rckd7jh4g5s5hiic7fjxnf1kx8d0"; - }; - }; - sbclBootstrap = callPackage ./bootstrap.nix { - cfg = bootstrapBinaries.${stdenv.hostPlatform.system}; - }; - bootstrapLisp = - if (builtins.hasAttr stdenv.hostPlatform.system bootstrapBinaries) - then "${sbclBootstrap}/bin/sbcl --disable-debugger --no-userinit --no-sysinit" - else "${clisp}/bin/clisp -E UTF-8 --silent -norc"; - -in - -stdenv.mkDerivation rec { - pname = "sbcl"; - inherit version; - - src = fetchurl { - url = "mirror://sourceforge/project/sbcl/sbcl/${version}/${pname}-${version}-source.tar.bz2"; - inherit (versionMap.${version}) sha256; - }; - - nativeBuildInputs = [ texinfo ]; - buildInputs = lib.optionals coreCompression [ zstd ]; - - patches = lib.optionals (version == "2.4.0") [ - ./fix-2.4.0-aarch64-darwin.patch - ]; - - postPatch = '' - echo '"${version}.nixos"' > version.lisp-expr - - # SBCL checks whether files are up-to-date in many places.. - # Unfortunately, same timestamp is not good enough - sed -e 's@> x y@>= x y@' -i contrib/sb-aclrepl/repl.lisp - #sed -e '/(date)/i((= date 2208988801) 2208988800)' -i contrib/asdf/asdf.lisp - sed -i src/cold/slam.lisp -e \ - '/file-write-date input/a)' - sed -i src/cold/slam.lisp -e \ - '/file-write-date output/i(or (and (= 2208988801 (file-write-date output)) (= 2208988801 (file-write-date input)))' - sed -i src/code/target-load.lisp -e \ - '/date defaulted-fasl/a)' - sed -i src/code/target-load.lisp -e \ - '/date defaulted-source/i(or (and (= 2208988801 (file-write-date defaulted-source-truename)) (= 2208988801 (file-write-date defaulted-fasl-truename)))' - - # Fix the tests - sed -e '5,$d' -i contrib/sb-bsd-sockets/tests.lisp - sed -e '5,$d' -i contrib/sb-simple-streams/*test*.lisp - '' - + (if purgeNixReferences - then - # This is the default location to look for the core; by default in $out/lib/sbcl - '' - sed 's@^\(#define SBCL_HOME\) .*$@\1 "/no-such-path"@' \ - -i src/runtime/runtime.c - '' - else - # Fix software version retrieval - '' - sed -e "s@/bin/uname@$(command -v uname)@g" -i src/code/*-os.lisp \ - src/code/run-program.lisp - '' - ); - - - preBuild = '' - export INSTALL_ROOT=$out - mkdir -p test-home - export HOME=$PWD/test-home - ''; - - enableFeatures = with lib; - optional threadSupport "sb-thread" ++ - optional linkableRuntime "sb-linkable-runtime" ++ - optional coreCompression "sb-core-compression" ++ - optional stdenv.isAarch32 "arm" ++ - optional markRegionGC "mark-region-gc"; - - disableFeatures = with lib; - optional (!threadSupport) "sb-thread" ++ - optionals disableImmobileSpace [ "immobile-space" "immobile-code" "compact-instance-header" ]; - - env.NIX_CFLAGS_COMPILE = toString (lib.optionals (lib.versionOlder version "2.1.10") [ - # Workaround build failure on -fno-common toolchains like upstream - # clang-13. Without the change build fails as: - # duplicate symbol '_static_code_space_free_pointer' in: alloc.o traceroot.o - # Should be fixed past 2.1.10 release. - "-fcommon" - ] - # Fails to find `O_LARGEFILE` otherwise. - ++ [ "-D_GNU_SOURCE" ]); - - buildPhase = '' - runHook preBuild - - sh make.sh --prefix=$out --xc-host="${bootstrapLisp}" ${ - lib.concatStringsSep " " - (builtins.map (x: "--with-${x}") enableFeatures ++ - builtins.map (x: "--without-${x}") disableFeatures) - } ${lib.optionalString (stdenv.hostPlatform.system == "aarch64-darwin") "--arch=arm64"} - (cd doc/manual ; make info) - - runHook postBuild - ''; - - installPhase = '' - runHook preInstall - - INSTALL_ROOT=$out sh install.sh - - runHook postInstall - '' - + lib.optionalString (!purgeNixReferences) '' - cp -r src $out/lib/sbcl - cp -r contrib $out/lib/sbcl - cat >$out/lib/sbcl/sbclrc <<EOF - (setf (logical-pathname-translations "SYS") - '(("SYS:SRC;**;*.*.*" #P"$out/lib/sbcl/src/**/*.*") - ("SYS:CONTRIB;**;*.*.*" #P"$out/lib/sbcl/contrib/**/*.*"))) - EOF - ''; - - setupHook = lib.optional purgeNixReferences (writeText "setupHook.sh" '' - addEnvHooks "$targetOffset" _setSbclHome - _setSbclHome() { - export SBCL_HOME='@out@/lib/sbcl/' - } - ''); - - meta = with lib; { - description = "Lisp compiler"; - homepage = "https://sbcl.org"; - license = licenses.publicDomain; # and FreeBSD - maintainers = lib.teams.lisp.members; - platforms = attrNames bootstrapBinaries ++ [ - # These aren’t bootstrapped using the binary distribution but compiled - # using a separate (lisp) host - "x86_64-linux" - "aarch64-darwin" - "aarch64-linux" - ]; - }; -} diff --git a/pkgs/development/compilers/sbcl/bootstrap.nix b/pkgs/development/compilers/sbcl/bootstrap.nix deleted file mode 100644 index e23557c5a62fc..0000000000000 --- a/pkgs/development/compilers/sbcl/bootstrap.nix +++ /dev/null @@ -1,29 +0,0 @@ -{ lib, stdenv, fetchurl, makeWrapper, cfg }: - -stdenv.mkDerivation rec { - pname = "sbcl-bootstrap"; - inherit (cfg) version; - - src = fetchurl { - url = "mirror://sourceforge/project/sbcl/sbcl/${version}/sbcl-${version}-${cfg.system}-binary.tar.bz2"; - inherit (cfg) sha256; - }; - - nativeBuildInputs = [ makeWrapper ]; - - installPhase = '' - mkdir -p $out/bin - cp -p src/runtime/sbcl $out/bin - - mkdir -p $out/share/sbcl - cp -p src/runtime/sbcl $out/share/sbcl - cp -p output/sbcl.core $out/share/sbcl - mkdir -p $out/bin - makeWrapper $out/share/sbcl/sbcl $out/bin/sbcl \ - --add-flags "--core $out/share/sbcl/sbcl.core" - ''; - - postFixup = lib.optionalString (!stdenv.isAarch32 && stdenv.isLinux) '' - patchelf --set-interpreter $(cat $NIX_CC/nix-support/dynamic-linker) $out/share/sbcl/sbcl - ''; -} diff --git a/pkgs/development/compilers/sbcl/fix-2.4.0-aarch64-darwin.patch b/pkgs/development/compilers/sbcl/fix-2.4.0-aarch64-darwin.patch deleted file mode 100644 index cd344f0cbd193..0000000000000 --- a/pkgs/development/compilers/sbcl/fix-2.4.0-aarch64-darwin.patch +++ /dev/null @@ -1,39 +0,0 @@ -From aed233638604b46c9a0c51e08d096d47303375ca Mon Sep 17 00:00:00 2001 -From: Douglas Katzman <dougk@google.com> -Date: Tue, 2 Jan 2024 09:20:48 -0500 -Subject: [PATCH] Fix multiple def error - -reported by Hraban Luyat ---- - src/runtime/gc-common.c | 1 + - src/runtime/gc.h | 2 +- - 2 files changed, 2 insertions(+), 1 deletion(-) - -diff --git a/src/runtime/gc-common.c b/src/runtime/gc-common.c -index 51963b8ff..07536f628 100644 ---- a/src/runtime/gc-common.c -+++ b/src/runtime/gc-common.c -@@ -2999,6 +2999,7 @@ void recompute_gen_bytes_allocated() { - #endif - - #ifdef LISP_FEATURE_DARWIN_JIT -+_Atomic(char) *page_execp; - #include "sys_mmap.inc" - #include <errno.h> - /* darwin-jit has another reason to remap besides just zeroing, namely, -diff --git a/src/runtime/gc.h b/src/runtime/gc.h -index 804e6fce2..5fdc215c2 100644 ---- a/src/runtime/gc.h -+++ b/src/runtime/gc.h -@@ -151,7 +151,7 @@ extern void prepare_pages(bool commit, page_index_t start, page_index_t end, - * squeeze a bit into the 'type' field of the page table, but it's clearer to - * have this externally so that page type 0 remains as "free" */ - #ifdef LISP_FEATURE_DARWIN_JIT --_Atomic(char) *page_execp; -+extern _Atomic(char) *page_execp; - static inline void set_page_executable(page_index_t i, bool val) { page_execp[i] = val; } - #endif - --- -2.42.0 - diff --git a/pkgs/development/compilers/shaderc/default.nix b/pkgs/development/compilers/shaderc/default.nix index 3a75c9b8c9592..8982382247939 100644 --- a/pkgs/development/compilers/shaderc/default.nix +++ b/pkgs/development/compilers/shaderc/default.nix @@ -8,25 +8,25 @@ let glslang = fetchFromGitHub { owner = "KhronosGroup"; repo = "glslang"; - rev = "728c689574fba7e53305b475cd57f196c1a21226"; - hash = "sha256-BAgDQosiO3e4yy2DpQ6SjrJNrHTUDSduHFRvzWvd4v0="; + rev = "a91631b260cba3f22858d6c6827511e636c2458a"; + hash = "sha256-7kIIU45pe+IF7lGltpIKSvQBmcXR+TWFvmx7ztMNrpc="; }; spirv-tools = fetchFromGitHub { owner = "KhronosGroup"; repo = "SPIRV-Tools"; - rev = "d9446130d5165f7fafcb3599252a22e264c7d4bd"; - hash = "sha256-fuYhzfkWXDm1icLHifc32XZCNQ6Dj5f5WJslT2JoMbc="; + rev = "f0cc85efdbbe3a46eae90e0f915dc1509836d0fc"; + hash = "sha256-RzGvoDt1Qc+f6mZsfs99MxX4YB3yFc5FP92Yx/WGrsI="; }; spirv-headers = fetchFromGitHub { owner = "KhronosGroup"; repo = "SPIRV-Headers"; - rev = "c214f6f2d1a7253bb0e9f195c2dc5b0659dc99ef"; - hash = "sha256-/9EDOiqN6ZzDhRKP/Kv8D/BT2Cs7G8wyzEsGATLpmrA="; + rev = "1c6bb2743599e6eb6f37b2969acc0aef812e32e3"; + hash = "sha256-/I9dJlBE0kvFvqooKuqMETtOE72Jmva3zIGnq0o4+aE="; }; in stdenv.mkDerivation rec { pname = "shaderc"; - version = "2022.4"; + version = "2023.8"; outputs = [ "out" "lib" "bin" "dev" "static" ]; @@ -34,13 +34,14 @@ stdenv.mkDerivation rec { owner = "google"; repo = "shaderc"; rev = "v${version}"; - hash = "sha256-/p2gJ7Lnh8IfvwBwHPDtmfLJ8j+Rbv+Oxu9lxY6fxfk="; + hash = "sha256-c8mJ361DY2VlSFZ4/RCrV+nqB9HblbOdfMkI4cM1QzM="; }; patchPhase = '' cp -r --no-preserve=mode ${glslang} third_party/glslang cp -r --no-preserve=mode ${spirv-tools} third_party/spirv-tools ln -s ${spirv-headers} third_party/spirv-tools/external/spirv-headers + patchShebangs --build utils/ ''; nativeBuildInputs = [ cmake python3 ] diff --git a/pkgs/development/compilers/spirv-llvm-translator/default.nix b/pkgs/development/compilers/spirv-llvm-translator/default.nix index 4db3b93217d7f..88119d002808d 100644 --- a/pkgs/development/compilers/spirv-llvm-translator/default.nix +++ b/pkgs/development/compilers/spirv-llvm-translator/default.nix @@ -28,10 +28,10 @@ let version = "15.0.0"; rev = "v${version}"; hash = "sha256-OsDohXRxovtEXaWiRGp8gJ0dXmoALyO+ZimeSO8aPVI="; - } else if llvmMajor == "14" then rec{ - version = "14.0.0+unstable-2023-06-22"; - rev = "23f398bf369093b1fd67459db8071ffcc6b92658"; - hash = "sha256-o7cVj5/ZMER2CvfxL4pRb2qCIxC/HFUPiitf2fKtCyk="; + } else if llvmMajor == "14" then { + version = "14.0.0+unstable-2024-01-23"; + rev = "582a3024c0c2d624a40fa2731d74b2c9ca3b94ab"; + hash = "sha256-1IRX+5Xh8Fj+/1DIZQrN8ijb2y7H39Y3u+IdbqjQgCc="; } else if llvmMajor == "11" then { version = "11.0.0+unstable-2022-05-04"; rev = "4ef524240833abfeee1c5b9fff6b1bd53f4806b3"; # 267 commits ahead of v11.0.0 @@ -48,7 +48,14 @@ disable-warnings-if-gcc13 (stdenv.mkDerivation { inherit (branch) rev hash; }; - patches = lib.optionals (llvmMajor == "16") [ + patches = lib.optionals (lib.versionAtLeast llvmMajor "15") [ + # Fixes build after spirv-headers breaking change + (fetchpatch { + url = "https://github.com/KhronosGroup/SPIRV-LLVM-Translator/commit/0166a0fb86dc6c0e8903436bbc3a89bc3273ebc0.patch"; + excludes = ["spirv-headers-tag.conf"]; + hash = "sha256-17JJG8eCFVphElY5fVT/79hj0bByWxo8mVp1ZNjQk/M="; + }) + ] ++ lib.optionals (llvmMajor == "16") [ # Fixes builds that link against external LLVM dynamic library (fetchpatch { url = "https://github.com/KhronosGroup/SPIRV-LLVM-Translator/commit/f3b9b604d7eda18d0d1029d94a6eebd33aa3a3fe.patch"; diff --git a/pkgs/development/compilers/stanc/default.nix b/pkgs/development/compilers/stanc/default.nix index ef3ed21414674..66671823d8663 100644 --- a/pkgs/development/compilers/stanc/default.nix +++ b/pkgs/development/compilers/stanc/default.nix @@ -5,7 +5,7 @@ ocamlPackages.buildDunePackage rec { pname = "stanc"; - version = "2.33.1"; + version = "2.34.0"; minimalOCamlVersion = "4.12"; duneVersion = "3"; @@ -14,7 +14,7 @@ ocamlPackages.buildDunePackage rec { owner = "stan-dev"; repo = "stanc3"; rev = "v${version}"; - hash = "sha256-DeQOiYJ5OHIMXcYHTYlObJnxM2Rqf6pSN4T7sAGw+wg="; + hash = "sha256-ixZCix3oLZhzs08JbmbNCO0lhAu1Jf+KnpHNKlU/FaA="; }; # Error: This expression has type [ `Use_Sys_unix ] diff --git a/pkgs/development/compilers/tvm/default.nix b/pkgs/development/compilers/tvm/default.nix index da6b2dc16700d..3613ed55e0844 100644 --- a/pkgs/development/compilers/tvm/default.nix +++ b/pkgs/development/compilers/tvm/default.nix @@ -2,14 +2,14 @@ stdenv.mkDerivation rec { pname = "tvm"; - version = "0.14.0"; + version = "0.15.0"; src = fetchFromGitHub { owner = "apache"; repo = "incubator-tvm"; rev = "v${version}"; fetchSubmodules = true; - sha256 = "sha256-ePBEiT7Yl54KQou/VP/aZEJ6BueH8ocB+/TUhZJkgH8="; + sha256 = "sha256-VbJptTUi12pJh1wz4I+xL6HVo/rSiUHCkvgEMPe1F6o="; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/compilers/unison/default.nix b/pkgs/development/compilers/unison/default.nix index bad47d45e11a1..56ca3a0104cf8 100644 --- a/pkgs/development/compilers/unison/default.nix +++ b/pkgs/development/compilers/unison/default.nix @@ -11,17 +11,17 @@ stdenv.mkDerivation (finalAttrs: { pname = "unison-code-manager"; - version = "0.5.12"; + version = "0.5.15"; src = if stdenv.isDarwin then fetchurl { url = "https://github.com/unisonweb/unison/releases/download/release/${finalAttrs.version}/ucm-macos.tar.gz"; - hash = "sha256-naX80UdSAwFAGS04Zd5VyVS2KQWnotE4+mJxWYRXXNU="; + hash = "sha256-Umpu9WQhg6ln6aBb6bPVUZSax1Zeh6vcYHwmQuFRx2Y="; } else fetchurl { url = "https://github.com/unisonweb/unison/releases/download/release/${finalAttrs.version}/ucm-linux.tar.gz"; - hash = "sha256-RD6pHDQI8ssU/E8LzLXmqtedLCL5wZV/bO3KHIWiYN8="; + hash = "sha256-cFucBQcyye4F6Vep6O9buENFzqJ96q8/2cVr9NFvHB8="; }; # The tarball is just the prebuilt binary, in the archive root. diff --git a/pkgs/development/compilers/vyper/default.nix b/pkgs/development/compilers/vyper/default.nix index 1a621f54acd45..fb83f299bd8c9 100644 --- a/pkgs/development/compilers/vyper/default.nix +++ b/pkgs/development/compilers/vyper/default.nix @@ -1,20 +1,20 @@ { lib +, asttokens , buildPythonPackage +, cbor2 , fetchPypi +, git +, importlib-metadata +, packaging +, pycryptodome +, pytest-runner , pythonOlder , pythonRelaxDepsHook -, writeText -, asttokens -, pycryptodome -, importlib-metadata -, cbor2 , recommonmark -, semantic-version +, setuptools-scm , sphinx , sphinx-rtd-theme -, pytest-runner -, setuptools-scm -, git +, writeText }: let @@ -30,15 +30,21 @@ in buildPythonPackage rec { pname = "vyper"; version = "0.3.10"; - format = "setuptools"; + pyproject = true; - disabled = pythonOlder "3.7"; + disabled = pythonOlder "3.10"; src = fetchPypi { inherit pname version; hash = "sha256-jcH1AcqrQX+wzpxoppRFh/AUfsfMfTiJzzpFwZRm5Ik="; }; + postPatch = '' + # pythonRelaxDeps doesn't work + substituteInPlace setup.py \ + --replace "setuptools_scm>=7.1.0,<8.0.0" "setuptools_scm>=7.1.0" + ''; + nativeBuildInputs = [ # Git is used in setup.py to compute version information during building # ever since https://github.com/vyperlang/vyper/pull/2816 @@ -49,14 +55,16 @@ buildPythonPackage rec { setuptools-scm ]; - pythonRelaxDeps = [ "asttokens" "semantic-version" ]; + pythonRelaxDeps = [ + "asttokens" + ]; propagatedBuildInputs = [ asttokens - pycryptodome - semantic-version - importlib-metadata cbor2 + importlib-metadata + packaging + pycryptodome # docs recommonmark @@ -68,9 +76,14 @@ buildPythonPackage rec { $out/bin/vyper "${sample-contract}" ''; + pythonImportsCheck = [ + "vyper" + ]; + meta = with lib; { description = "Pythonic Smart Contract Language for the EVM"; homepage = "https://github.com/vyperlang/vyper"; + changelog = "https://github.com/vyperlang/vyper/releases/tag/v${version}"; license = licenses.asl20; maintainers = with maintainers; [ siraben ]; }; diff --git a/pkgs/development/compilers/yosys/default.nix b/pkgs/development/compilers/yosys/default.nix index dd08a92508dbd..850e02dc6e672 100644 --- a/pkgs/development/compilers/yosys/default.nix +++ b/pkgs/development/compilers/yosys/default.nix @@ -77,13 +77,13 @@ let in stdenv.mkDerivation (finalAttrs: { pname = "yosys"; - version = "0.36"; + version = "0.37"; src = fetchFromGitHub { owner = "YosysHQ"; repo = "yosys"; rev = "refs/tags/${finalAttrs.pname}-${finalAttrs.version}"; - hash = "sha256-jcaXn77OuKeC3AQTicILP3ABkJ3qBccM+uGbj1wn2Vw="; + hash = "sha256-JRztXMZMBFhdZMeVHkRxFulRrFzyuNaLzcRlmgAz6Gc="; }; enableParallelBuilding = true; diff --git a/pkgs/development/compilers/yosys/fix-clang-build.patch b/pkgs/development/compilers/yosys/fix-clang-build.patch index 2581f0abab9b1..843ffd6d65af5 100644 --- a/pkgs/development/compilers/yosys/fix-clang-build.patch +++ b/pkgs/development/compilers/yosys/fix-clang-build.patch @@ -1,5 +1,3 @@ -diff --git a/Makefile b/Makefile -index fa95b7b70..4d15ed721 100644 --- a/Makefile +++ b/Makefile @@ -215,7 +215,7 @@ ABC_ARCHFLAGS += "-DABC_NO_RLIMIT" @@ -11,8 +9,17 @@ index fa95b7b70..4d15ed721 100644 LD = clang++ CXXFLAGS += -std=$(CXXSTD) -Os ABCMKARGS += ARCHFLAGS="-DABC_USE_STDINT_H -Wno-c++11-narrowing $(ABC_ARCHFLAGS)" -diff --git a/tests/fmt/run-test.sh b/tests/fmt/run-test.sh -index 914a72347..bc0b129d2 100644 +--- a/tests/cxxrtl/run-test.sh ++++ b/tests/cxxrtl/run-test.sh +@@ -5,7 +5,7 @@ set -ex + run_subtest () { + local subtest=$1; shift + +- ${CC:-gcc} -std=c++11 -O2 -o cxxrtl-test-${subtest} -I../../backends/cxxrtl/runtime test_${subtest}.cc -lstdc++ ++ ${CXX:-gcc} -std=c++11 -O2 -o cxxrtl-test-${subtest} -I../../backends/cxxrtl/runtime test_${subtest}.cc -lstdc++ + ./cxxrtl-test-${subtest} + } + --- a/tests/fmt/run-test.sh +++ b/tests/fmt/run-test.sh @@ -51,7 +51,7 @@ test_cxxrtl () { diff --git a/pkgs/development/compilers/yosys/plugins/synlig.nix b/pkgs/development/compilers/yosys/plugins/synlig.nix index f6232c1a9dfa4..665421af21f3f 100644 --- a/pkgs/development/compilers/yosys/plugins/synlig.nix +++ b/pkgs/development/compilers/yosys/plugins/synlig.nix @@ -1,6 +1,7 @@ { stdenv , lib , fetchFromGitHub +, fetchpatch , pkg-config , antlr4 , capnproto @@ -29,6 +30,15 @@ stdenv.mkDerivation (finalAttrs: { fetchSubmodules = false; # we use all dependencies from nix }; + patches = [ + (fetchpatch { + # Fixes https://github.com/chipsalliance/synlig/issues/2299 + name = "make-compile-for-yosys-0.37.patch"; + url = "https://github.com/chipsalliance/synlig/commit/3dd46d4769c20b6dd1163310f8e56560b351a211.patch"; + hash = "sha256-OP/2HA/Ukt6o5aKgoBk19P6T/33btU/x6VnoIVXct1g="; + }) + ]; + nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/development/compilers/z88dk/default.nix b/pkgs/development/compilers/z88dk/default.nix index 549d0c50c3d9b..a3217f5732c23 100644 --- a/pkgs/development/compilers/z88dk/default.nix +++ b/pkgs/development/compilers/z88dk/default.nix @@ -1,14 +1,14 @@ -{ fetchFromGitHub, lib, stdenv, makeWrapper, unzip, libxml2, m4, uthash, which }: +{ fetchFromGitHub, lib, stdenv, makeWrapper, unzip, libxml2, gmp, m4, uthash, which, pkg-config }: stdenv.mkDerivation rec { pname = "z88dk"; - version = "2.2"; + version = "2.3"; src = fetchFromGitHub { owner = "z88dk"; repo = "z88dk"; rev = "v${version}"; - sha256 = "sha256-vf/hEmcl6R3nsc66G6eETNeW0SV/odk14XIpEPPAbKo="; + sha256 = "sha256-CHTORgK6FYIO6n+cvTUX4huY2Ek5FuHrs40QN5NZX44="; fetchSubmodules = true; }; @@ -40,8 +40,8 @@ stdenv.mkDerivation rec { "git_count=0" ]; - nativeBuildInputs = [ which makeWrapper unzip ]; - buildInputs = [ libxml2 m4 uthash ]; + nativeBuildInputs = [ which makeWrapper unzip pkg-config ]; + buildInputs = [ libxml2 m4 uthash gmp ]; preInstall = '' mkdir -p $out/{bin,share} diff --git a/pkgs/development/compilers/zulu/17.nix b/pkgs/development/compilers/zulu/17.nix index fcfe39af10ac5..74e00df88c682 100644 --- a/pkgs/development/compilers/zulu/17.nix +++ b/pkgs/development/compilers/zulu/17.nix @@ -8,35 +8,35 @@ callPackage ./common.nix ({ # Note that the latest build may differ by platform dists = { x86_64-linux = { - zuluVersion = "17.44.53"; - jdkVersion = "17.0.8.1"; + zuluVersion = "17.48.15"; + jdkVersion = "17.0.10"; hash = - if enableJavaFX then "sha256-R6VJcSjpKFfsO3l32+8s+wlcuAVoXcSsW5Dg2M/hjpI=" - else "sha256-uUgvIwShpophTfrN3PKVaacvD6wy5sdPg9wbmhV7g0A="; + if enableJavaFX then "sha256-YvuD/n84+DARPm+38TxIUB727SIhASFo+WX9+PtJqyw=" + else "sha256-VyhNob2G1Tq/WCKT0g0Y//f+JD2hWgj6QU9idfvUj+I="; }; aarch64-linux = { - zuluVersion = "17.44.53"; - jdkVersion = "17.0.8.1"; + zuluVersion = "17.48.15"; + jdkVersion = "17.0.10"; hash = if enableJavaFX then throw "JavaFX is not available for aarch64-linux" - else "sha256-ZTHO9h5BbVp7aRVVyM8r3/aJIBuKAB/0WrZ0AGK0QxM="; + else "sha256-9OZl8ruaLvjdpg42fC3IM5mC/9lmshCppNfUuz/Sf8E="; }; x86_64-darwin = { - zuluVersion = "17.44.53"; - jdkVersion = "17.0.8.1"; + zuluVersion = "17.48.15"; + jdkVersion = "17.0.10"; hash = - if enableJavaFX then "sha256-9U0XYZRA+LZTQ7eHrT5SWhgcxv43ajC9n9Tj3qPPLWA=" - else "sha256-ZART6K/o/+D7Tc60U1+1DbnCg8ZGZe67C6aLGeZfSx8="; + if enableJavaFX then "sha256-VOIcFtjQiYsA4AiP1TCa0Q76Ew5FdeJCICwsYGU+Dnw=" + else "sha256-huSKGvOnrEUAiE2MJbdHWtF2saeLGaQkZllXzDo8o+g="; }; aarch64-darwin = { - zuluVersion = "17.44.53"; - jdkVersion = "17.0.8.1"; + zuluVersion = "17.48.15"; + jdkVersion = "17.0.10"; hash = - if enableJavaFX then "sha256-udYW3nOADclWqVcVtS9dgjSY0w6xf2nsBpLzPmQCYlI=" - else "sha256-MUsEVo7Arps2ugPJy9Qq3J4SZfdGeJI7GSl9ZuuE3Mo="; + if enableJavaFX then "sha256-fxBDhHMeL5IP4eRw9ykXrRRh7Nl9DnvDB1YLaQwFHLg=" + else "sha256-kuEiHSkb4WFtPB3m0A968LPZw7Wl0sKquhbzDF8vQS8="; }; }; } // builtins.removeAttrs args [ "callPackage" ]) diff --git a/pkgs/development/compilers/zulu/21.nix b/pkgs/development/compilers/zulu/21.nix index 09b420d533a2a..db2d3a3978715 100644 --- a/pkgs/development/compilers/zulu/21.nix +++ b/pkgs/development/compilers/zulu/21.nix @@ -8,35 +8,35 @@ callPackage ./common.nix ({ # Note that the latest build may differ by platform dists = { x86_64-linux = { - zuluVersion = "21.28.85"; - jdkVersion = "21.0.0"; + zuluVersion = "21.32.17"; + jdkVersion = "21.0.2"; hash = - if enableJavaFX then "sha256-ew/tgSdkrPdk1CTguk9nyl30w7se+YZYqyqOTaeketk=" - else "sha256-DA6t+9xHp8pkrqtRucBh9xtuTSXS2HZ0US6bY4fp46Y="; + if enableJavaFX then "sha256-CEM2lMjyZLWS1tBcS1tBTUxBwAyzW3vrpRWFVVSFVGY=" + else "sha256-Wtcw++5rtJv/8QvznoQ5LnKNiRA9NHSn5d7w/RNLMAo="; }; aarch64-linux = { - zuluVersion = "21.28.85"; - jdkVersion = "21.0.0"; + zuluVersion = "21.32.17"; + jdkVersion = "21.0.2"; hash = if enableJavaFX then throw "JavaFX is not available for aarch64-linux" - else "sha256-H7ZLgDbF1GPYq1mvBr9bawBoEeYBLjsOtrzPV/HFWDU="; + else "sha256-zn3xr11EqfRVYXxLiJFEP74+Syacd32Lgu1m93Fnz+A="; }; x86_64-darwin = { - zuluVersion = "21.28.85"; - jdkVersion = "21.0.0"; + zuluVersion = "21.32.17"; + jdkVersion = "21.0.2"; hash = - if enableJavaFX then "sha256-QrgEpLaNGc2aNFF38z2ckUTCpweKnuALYLOWATZFJPA=" - else "sha256-ljm4fbWG0MifepiSrkf0IeRCxkuXuuvf8xeI++IyZb0="; + if enableJavaFX then "sha256-CbEKa9Z/ItFqVM4BqsWXyRf5ejQZXPK8OqkULr9Cpqk=" + else "sha256-Otj+KI61fZdcJ4auRToDaqRuR6sqw9gVOOuuKlTTwCU="; }; aarch64-darwin = { - zuluVersion = "21.28.85"; - jdkVersion = "21.0.0"; + zuluVersion = "21.32.17"; + jdkVersion = "21.0.2"; hash = - if enableJavaFX then "sha256-PUVB/R1K1dLTi1FsOYIvcI76M6EYYeMG1Bm+oMno//Y=" - else "sha256-KnqZo+omPb2NMqZ9Hm42O6iyXGRcgm9eFnoCu6+v8fo="; + if enableJavaFX then "sha256-PK+cafgQsnK6acuQxun4IUiyYHQJsBfUawwfGV8OCfQ=" + else "sha256-6CYFFt6LYGYUIqcl8d8sNu+Ij2+zU5NWawDnMl2z0E4="; }; }; } // builtins.removeAttrs args [ "callPackage" ]) diff --git a/pkgs/development/compilers/zulu/common.nix b/pkgs/development/compilers/zulu/common.nix index d09555b00c9ca..75925ed81bece 100644 --- a/pkgs/development/compilers/zulu/common.nix +++ b/pkgs/development/compilers/zulu/common.nix @@ -57,7 +57,7 @@ let isJdk8 = lib.versions.major dist.jdkVersion == "8"; jdk = stdenv.mkDerivation rec { - pname = "zulu${dist.zuluVersion}-${javaPackage}"; + pname = "zulu-${javaPackage}"; version = dist.jdkVersion; src = fetchurl { diff --git a/pkgs/development/coq-modules/ITree/default.nix b/pkgs/development/coq-modules/ITree/default.nix index aee24225021c2..c886dfd149812 100644 --- a/pkgs/development/coq-modules/ITree/default.nix +++ b/pkgs/development/coq-modules/ITree/default.nix @@ -5,7 +5,7 @@ mkCoqDerivation rec { owner = "DeepSpec"; inherit version; defaultVersion = with lib.versions; lib.switch coq.version [ - { case = range "8.13" "8.18"; out = "5.1.2"; } + { case = range "8.13" "8.19"; out = "5.1.2"; } { case = range "8.10" "8.16"; out = "4.0.0"; } ] null; release."5.1.2".sha256 = "sha256-uKJIjNXGWl0YS0WH52Rnr9Jz98Eo2k0X0qWB9hUYJMk="; diff --git a/pkgs/development/coq-modules/QuickChick/default.nix b/pkgs/development/coq-modules/QuickChick/default.nix index d68f0e2f05867..a39e29d25f880 100644 --- a/pkgs/development/coq-modules/QuickChick/default.nix +++ b/pkgs/development/coq-modules/QuickChick/default.nix @@ -6,7 +6,7 @@ let recent = lib.versions.isGe "8.7" coq.coq-version; in owner = "QuickChick"; inherit version; defaultVersion = with lib; with versions; lib.switch [ coq.coq-version ssreflect.version ] [ - { cases = [ (range "8.15" "8.18") pred.true ]; out = "2.0.1"; } + { cases = [ (range "8.15" "8.19") pred.true ]; out = "2.0.2"; } { cases = [ (range "8.13" "8.17") pred.true ]; out = "1.6.5"; } { cases = [ "8.13" pred.true ]; out = "1.5.0"; } { cases = [ "8.12" pred.true ]; out = "1.4.0"; } @@ -18,6 +18,7 @@ let recent = lib.versions.isGe "8.7" coq.coq-version; in { cases = [ "8.6" pred.true ]; out = "20171102"; } { cases = [ "8.5" pred.true ]; out = "20170512"; } ] null; + release."2.0.2".sha256 = "sha256-xxKkwDRjB8nUiXNhein1Ppn0DP5FZ13J90xUPAnQBbs="; release."2.0.1".sha256 = "sha256-gJc+9Or6tbqE00920Il4pnEvokRoiADX6CxP/Q0QZaY="; release."1.6.5".sha256 = "sha256-rcFyRDH8UbB9KVk10P5qjtPkWs04p78VNHkCq4mXr3U="; release."1.6.4".sha256 = "sha256-C1060wPSU33yZAFLxGmZlAMXASnx98qz3oSLO8DO+mM="; diff --git a/pkgs/development/coq-modules/coqeal/default.nix b/pkgs/development/coq-modules/coqeal/default.nix index a6ef9e0b8a32d..60926e712ad7c 100644 --- a/pkgs/development/coq-modules/coqeal/default.nix +++ b/pkgs/development/coq-modules/coqeal/default.nix @@ -8,15 +8,17 @@ inherit version; defaultVersion = with lib.versions; lib.switch [ coq.version mathcomp.version ] [ - { cases = [ (range "8.16" "8.18") (isGe "2.0.0") ]; out = "2.0.0"; } - { cases = [ (range "8.15" "8.18") (isGe "1.15.0") ]; out = "1.1.3"; } - { cases = [ (range "8.13" "8.17") (isGe "1.13.0") ]; out = "1.1.1"; } - { cases = [ (range "8.10" "8.15") (isGe "1.12.0") ]; out = "1.1.0"; } + { cases = [ (range "8.16" "8.19") (isGe "2.0.0") ]; out = "2.0.1"; } + { cases = [ (range "8.16" "8.17") (isGe "2.0.0") ]; out = "2.0.0"; } + { cases = [ (range "8.15" "8.18") (range "1.15.0" "1.18.0") ]; out = "1.1.3"; } + { cases = [ (range "8.13" "8.17") (range "1.13.0" "1.18.0") ]; out = "1.1.1"; } + { cases = [ (range "8.10" "8.15") (range "1.12.0" "1.18.0") ]; out = "1.1.0"; } { cases = [ (isGe "8.10") (range "1.11.0" "1.12.0") ]; out = "1.0.5"; } { cases = [ (isGe "8.7") "1.11.0" ]; out = "1.0.4"; } { cases = [ (isGe "8.7") "1.10.0" ]; out = "1.0.3"; } ] null; + release."2.0.1".sha256 = "sha256-d/IQ4IdS2tpyPewcGobj2S6m2HU+iXQmlvR+ITNIcjI="; release."2.0.0".sha256 = "sha256-SG/KVnRJz2P+ZxkWVp1dDOnc/JVgigoexKfRUh1Y0GM"; release."1.1.3".sha256 = "sha256-xhqWpg86xbU1GbDtXXInNCTArjjPnWZctWiiasq1ScU="; release."1.1.1".sha256 = "sha256-ExAdC3WuArNxS+Sa1r4x5aT7ylbCvP/BZXfkdQNAvZ8="; diff --git a/pkgs/development/coq-modules/coqprime/default.nix b/pkgs/development/coq-modules/coqprime/default.nix index 9420d69cb4b08..1bd886941ec60 100644 --- a/pkgs/development/coq-modules/coqprime/default.nix +++ b/pkgs/development/coq-modules/coqprime/default.nix @@ -6,7 +6,7 @@ mkCoqDerivation { owner = "thery"; inherit version; defaultVersion = with lib.versions; lib.switch coq.coq-version [ - { case = range "8.14" "8.18"; out = "8.18"; } + { case = range "8.14" "8.19"; out = "8.18"; } { case = range "8.12" "8.16"; out = "8.15"; } { case = range "8.10" "8.11"; out = "8.10"; } { case = range "8.8" "8.9"; out = "8.8"; } diff --git a/pkgs/development/coq-modules/coquelicot/default.nix b/pkgs/development/coq-modules/coquelicot/default.nix index e09eace718503..4ce063339f073 100644 --- a/pkgs/development/coq-modules/coquelicot/default.nix +++ b/pkgs/development/coq-modules/coquelicot/default.nix @@ -7,12 +7,14 @@ mkCoqDerivation { domain = "gitlab.inria.fr"; inherit version; defaultVersion = with lib.versions; lib.switch coq.coq-version [ + { case = range "8.12" "8.19"; out = "3.4.1"; } { case = range "8.12" "8.18"; out = "3.4.0"; } { case = range "8.12" "8.17"; out = "3.3.0"; } { case = range "8.8" "8.16"; out = "3.2.0"; } { case = range "8.8" "8.13"; out = "3.1.0"; } { case = range "8.5" "8.9"; out = "3.0.2"; } ] null; + release."3.4.1".sha256 = "sha256-REhvIBl3EaL8CQqI34Gn7Xjf9NhPI3nrUAO26pSLbm0="; release."3.4.0".sha256 = "sha256-LIj2SwTvVBxSAO58VYCQix/uxQQe8ey6hqFOSh3PNcg="; release."3.3.1".sha256 = "sha256-YCvd4aIt2BxLKBYSWzN7aqo0AuY7z8oADmKvybhYBQI="; release."3.3.0".sha256 = "sha256-bh9qP/EhWrHpTe2GMGG3S2vgBSSK088mFfhAIGejVoU="; diff --git a/pkgs/development/coq-modules/deriving/default.nix b/pkgs/development/coq-modules/deriving/default.nix index 9addbedb36430..704b4f8123b03 100644 --- a/pkgs/development/coq-modules/deriving/default.nix +++ b/pkgs/development/coq-modules/deriving/default.nix @@ -8,8 +8,8 @@ mkCoqDerivation { inherit version; defaultVersion = with lib.versions; lib.switch [coq.coq-version ssreflect.version] [ - { cases = [(range "8.17" "8.18") (isGe "2.0.0")] ; out = "0.2.0"; } - { cases = [(range "8.11" "8.18") (isLe "2.0.0")] ; out = "0.1.1"; } + { cases = [(range "8.17" "8.19") (isGe "2.0.0")] ; out = "0.2.0"; } + { cases = [(range "8.11" "8.19") (isLe "2.0.0")] ; out = "0.1.1"; } ] null; releaseRev = v: "v${v}"; diff --git a/pkgs/development/coq-modules/extructures/default.nix b/pkgs/development/coq-modules/extructures/default.nix index 15dd62fb75521..3cd742fdd3377 100644 --- a/pkgs/development/coq-modules/extructures/default.nix +++ b/pkgs/development/coq-modules/extructures/default.nix @@ -9,8 +9,8 @@ inherit version; defaultVersion = with lib.versions; lib.switch [coq.coq-version ssreflect.version] [ - { cases = [(range "8.17" "8.18") (isGe "2.0.0") ]; out = "0.4.0"; } - { cases = [(range "8.11" "8.18") (range "1.12.0" "1.18.0") ]; out = "0.3.1"; } + { cases = [(range "8.17" "8.19") (isGe "2.0.0") ]; out = "0.4.0"; } + { cases = [(range "8.11" "8.19") (range "1.12.0" "1.19.0") ]; out = "0.3.1"; } { cases = [(range "8.11" "8.14") (isLe "1.12.0") ]; out = "0.3.0"; } { cases = [(range "8.10" "8.12") (isLe "1.12.0") ]; out = "0.2.2"; } ] null; diff --git a/pkgs/development/coq-modules/flocq/default.nix b/pkgs/development/coq-modules/flocq/default.nix index bf8155e928fec..8be0213a46eb4 100644 --- a/pkgs/development/coq-modules/flocq/default.nix +++ b/pkgs/development/coq-modules/flocq/default.nix @@ -7,12 +7,14 @@ mkCoqDerivation { domain = "gitlab.inria.fr"; inherit version; defaultVersion = with lib.versions; lib.switch coq.coq-version [ + { case = range "8.14" "8.19"; out = "4.1.4"; } { case = range "8.14" "8.18"; out = "4.1.3"; } { case = range "8.14" "8.17"; out = "4.1.1"; } { case = range "8.14" "8.16"; out = "4.1.0"; } { case = range "8.7" "8.15"; out = "3.4.3"; } { case = range "8.5" "8.8"; out = "2.6.1"; } ] null; + release."4.1.4".sha256 = "sha256-Use6Mlx79yef1CkCPyGoOItsD69B9KR+mQArCtmre4s="; release."4.1.3".sha256 = "sha256-os3cI885xNpxI+1p5rb8fSNnxKr7SFxqh83+3AM3t4I="; release."4.1.1".sha256 = "sha256-FbClxlV0ZaxITe7s9SlNbpeMNDJli+Dfh2TMrjaMtHo="; release."4.1.0".sha256 = "sha256:09rak9cha7q11yfqracbcq75mhmir84331h1218xcawza48rbjik"; diff --git a/pkgs/development/coq-modules/fourcolor/default.nix b/pkgs/development/coq-modules/fourcolor/default.nix index 53f98c13861f2..94994fb857358 100644 --- a/pkgs/development/coq-modules/fourcolor/default.nix +++ b/pkgs/development/coq-modules/fourcolor/default.nix @@ -16,7 +16,7 @@ mkCoqDerivation { defaultVersion = with lib.versions; lib.switch [ coq.version mathcomp.version ] [ { cases = [ (isGe "8.16") (isGe "2.0") ]; out = "1.3.1"; } { cases = [ (isGe "8.16") "2.0.0" ]; out = "1.3.0"; } - { cases = [ (isGe "8.11") (range "1.12" "1.18") ]; out = "1.2.5"; } + { cases = [ (isGe "8.11") (range "1.12" "1.19") ]; out = "1.2.5"; } { cases = [ (isGe "8.11") (range "1.11" "1.14") ]; out = "1.2.4"; } { cases = [ (isLe "8.13") (lib.pred.inter (isGe "1.11.0") (isLt "1.13")) ]; out = "1.2.3"; } ] null; diff --git a/pkgs/development/coq-modules/mathcomp-algebra-tactics/default.nix b/pkgs/development/coq-modules/mathcomp-algebra-tactics/default.nix index a665ea0db30ac..d913b34f0f795 100644 --- a/pkgs/development/coq-modules/mathcomp-algebra-tactics/default.nix +++ b/pkgs/development/coq-modules/mathcomp-algebra-tactics/default.nix @@ -9,14 +9,16 @@ mkCoqDerivation { defaultVersion = with lib.versions; lib.switch [ coq.coq-version mathcomp-algebra.version ] [ + { cases = [ (range "8.16" "8.19") (isGe "2.0") ]; out = "1.2.3"; } { cases = [ (range "8.16" "8.18") (isGe "2.0") ]; out = "1.2.2"; } - { cases = [ (range "8.16" "8.18") (isGe "1.15") ]; out = "1.1.1"; } + { cases = [ (range "8.16" "8.19") (isGe "1.15") ]; out = "1.1.1"; } { cases = [ (range "8.13" "8.16") (isGe "1.12") ]; out = "1.0.0"; } ] null; release."1.0.0".sha256 = "sha256-kszARPBizWbxSQ/Iqpf2vLbxYc6AjpUCLnSNlPcNfls="; release."1.1.1".sha256 = "sha256-5wItMeeTRoJlRBH3zBNc2VUZn6pkDde60YAvXTx+J3U="; release."1.2.2".sha256 = "sha256-EU9RJGV3BvnmsX+mGH+6+MDXiGHgDI7aP5sIYiMUXTs="; + release."1.2.3".sha256 = "sha256-6uc1VEfDv+fExEfBR2c0/Q/KjrkX0TbEMCLgeYcpkls="; propagatedBuildInputs = [ mathcomp-algebra coq-elpi mathcomp-zify ]; diff --git a/pkgs/development/coq-modules/mathcomp-bigenough/default.nix b/pkgs/development/coq-modules/mathcomp-bigenough/default.nix index 6c85e5f1c94f1..df73d2111172c 100644 --- a/pkgs/development/coq-modules/mathcomp-bigenough/default.nix +++ b/pkgs/development/coq-modules/mathcomp-bigenough/default.nix @@ -12,7 +12,7 @@ mkCoqDerivation { }; inherit version; defaultVersion = with lib.versions; lib.switch coq.version [ - { case = range "8.10" "8.18"; out = "1.0.1"; } + { case = range "8.10" "8.19"; out = "1.0.1"; } { case = range "8.5" "8.14"; out = "1.0.0"; } ] null; diff --git a/pkgs/development/coq-modules/mathcomp-finmap/default.nix b/pkgs/development/coq-modules/mathcomp-finmap/default.nix index fa6032a7f08d8..c2f6ea02133cf 100644 --- a/pkgs/development/coq-modules/mathcomp-finmap/default.nix +++ b/pkgs/development/coq-modules/mathcomp-finmap/default.nix @@ -7,8 +7,9 @@ mkCoqDerivation { owner = "math-comp"; inherit version; defaultVersion = with lib.versions; lib.switch [ coq.version mathcomp.version ] [ - { cases = [ (range "8.16" "8.18") (isGe "2.0") ]; out = "2.0.0"; } - { cases = [ (range "8.13" "8.18") (range "1.12" "1.18") ]; out = "1.5.2"; } + { cases = [ (range "8.16" "8.19") (isGe "2.0") ]; out = "2.1.0"; } + { cases = [ (range "8.16" "8.18") (range "2.0" "2.1") ]; out = "2.0.0"; } + { cases = [ (range "8.13" "8.19") (range "1.12" "1.19") ]; out = "1.5.2"; } { cases = [ (isGe "8.10") (range "1.11" "1.17") ]; out = "1.5.1"; } { cases = [ (range "8.7" "8.11") "1.11.0" ]; out = "1.5.0"; } { cases = [ (isEq "8.11") (range "1.8" "1.10") ]; out = "1.4.0+coq-8.11"; } @@ -18,6 +19,7 @@ mkCoqDerivation { { cases = [ (range "8.6" "8.7") (range "1.6.1" "1.7") ]; out = "1.0.0"; } ] null; release = { + "2.1.0".sha256 = "sha256-gh0cnhdVDyo+D5zdtxLc10kGKQLQ3ITzHnMC45mCtpY="; "2.0.0".sha256 = "sha256-0Wr1ZUYVuZH74vawO4EZlZ+K3kq+s1xEz/BfzyKj+wk="; "1.5.2".sha256 = "sha256-0KmmSjc2AlUo6BKr9RZ4FjL9wlGISlTGU0X1Eu7l4sw="; "1.5.1".sha256 = "0ryfml4pf1dfya16d8ma80favasmrygvspvb923n06kfw9v986j7"; diff --git a/pkgs/development/coq-modules/mathcomp-real-closed/default.nix b/pkgs/development/coq-modules/mathcomp-real-closed/default.nix index 5746c9c6387d0..28ff7a56786f2 100644 --- a/pkgs/development/coq-modules/mathcomp-real-closed/default.nix +++ b/pkgs/development/coq-modules/mathcomp-real-closed/default.nix @@ -21,9 +21,9 @@ mkCoqDerivation { defaultVersion = with lib.versions; lib.switch [ coq.version mathcomp.version ] [ { cases = [ (isGe "8.16") (isGe "2.0.0") ]; out = "2.0.0"; } - { cases = [ (isGe "8.13") (isGe "1.13.0") ]; out = "1.1.4"; } - { cases = [ (isGe "8.13") (isGe "1.12.0") ]; out = "1.1.3"; } - { cases = [ (isGe "8.10") (isGe "1.12.0") ]; out = "1.1.2"; } + { cases = [ (isGe "8.13") (range "1.13.0" "1.19.0") ]; out = "1.1.4"; } + { cases = [ (isGe "8.13") (range "1.12.0" "1.18.0") ]; out = "1.1.3"; } + { cases = [ (isGe "8.10") (range "1.12.0" "1.18.0") ]; out = "1.1.2"; } { cases = [ (isGe "8.7") "1.11.0" ]; out = "1.1.1"; } { cases = [ (isGe "8.7") (range "1.9.0" "1.10.0") ]; out = "1.0.4"; } { cases = [ (isGe "8.7") "1.8.0" ]; out = "1.0.3"; } diff --git a/pkgs/development/coq-modules/mathcomp-tarjan/default.nix b/pkgs/development/coq-modules/mathcomp-tarjan/default.nix index 146898ca86d93..38c29f25faa02 100644 --- a/pkgs/development/coq-modules/mathcomp-tarjan/default.nix +++ b/pkgs/development/coq-modules/mathcomp-tarjan/default.nix @@ -10,7 +10,7 @@ mkCoqDerivation { inherit version; defaultVersion = with lib.versions; lib.switch [ coq.version mathcomp-ssreflect.version ] [ - { cases = [ (range "8.16" "8.18") (isGe "2.0.0") ]; out = "1.0.2"; } + { cases = [ (range "8.16" "8.19") (isGe "2.0.0") ]; out = "1.0.2"; } { cases = [ (range "8.12" "8.18") (range "1.12.0" "1.17.0") ]; out = "1.0.1"; } { cases = [ (range "8.10" "8.16") (range "1.12.0" "1.17.0") ]; out = "1.0.0"; } ] null; diff --git a/pkgs/development/coq-modules/mathcomp-word/default.nix b/pkgs/development/coq-modules/mathcomp-word/default.nix index db8a23ea658a8..52d4799eb173d 100644 --- a/pkgs/development/coq-modules/mathcomp-word/default.nix +++ b/pkgs/development/coq-modules/mathcomp-word/default.nix @@ -25,8 +25,8 @@ mkCoqDerivation { inherit version; defaultVersion = with lib.versions; lib.switch [ coq.version mathcomp.version ] [ - { cases = [ (range "8.16" "8.18") (isGe "2.0") ]; out = "3.0"; } - { cases = [ (range "8.12" "8.18") (range "1.12" "1.18") ]; out = "2.2"; } + { cases = [ (range "8.16" "8.19") (isGe "2.0") ]; out = "3.0"; } + { cases = [ (range "8.12" "8.19") (range "1.12" "1.19") ]; out = "2.2"; } ] null; propagatedBuildInputs = [ mathcomp.algebra mathcomp.ssreflect mathcomp.fingroup ]; diff --git a/pkgs/development/coq-modules/mathcomp-zify/default.nix b/pkgs/development/coq-modules/mathcomp-zify/default.nix index bc4ed1f1f7473..8b9b8d6661063 100644 --- a/pkgs/development/coq-modules/mathcomp-zify/default.nix +++ b/pkgs/development/coq-modules/mathcomp-zify/default.nix @@ -9,8 +9,8 @@ mkCoqDerivation rec { defaultVersion = with lib.versions; lib.switch [ coq.coq-version mathcomp-algebra.version ] [ - { cases = [ (range "8.16" "8.18") (isGe "2.0.0") ]; out = "1.5.0+2.0+8.16"; } - { cases = [ (range "8.13" "8.18") (range "1.12" "1.18.0") ]; out = "1.3.0+1.12+8.13"; } + { cases = [ (range "8.16" "8.19") (isGe "2.0.0") ]; out = "1.5.0+2.0+8.16"; } + { cases = [ (range "8.13" "8.19") (range "1.12" "1.19.0") ]; out = "1.3.0+1.12+8.13"; } { cases = [ (range "8.13" "8.16") (range "1.12" "1.17.0") ]; out = "1.1.0+1.12+8.13"; } ] null; diff --git a/pkgs/development/coq-modules/mathcomp/default.nix b/pkgs/development/coq-modules/mathcomp/default.nix index 43bee68e7b5e1..50fc63de4cc49 100644 --- a/pkgs/development/coq-modules/mathcomp/default.nix +++ b/pkgs/development/coq-modules/mathcomp/default.nix @@ -19,8 +19,10 @@ let owner = "math-comp"; withDoc = single && (args.withDoc or false); defaultVersion = with versions; lib.switch coq.coq-version [ + { case = range "8.19" "8.19"; out = "1.19.0"; } { case = range "8.17" "8.18"; out = "1.18.0"; } { case = range "8.15" "8.18"; out = "1.17.0"; } + { case = range "8.16" "8.19"; out = "2.2.0"; } { case = range "8.16" "8.18"; out = "2.1.0"; } { case = range "8.16" "8.18"; out = "2.0.0"; } { case = range "8.13" "8.18"; out = "1.16.0"; } @@ -36,8 +38,10 @@ let { case = range "8.5" "8.7"; out = "1.6.4"; } ] null; release = { + "2.2.0".sha256 = "sha256-SPyWSI5kIP5w7VpgnQ4vnK56yEuWnJylNQOT7M77yoQ="; "2.1.0".sha256 = "sha256-XDLx0BIkVRkSJ4sGCIE51j3rtkSGemNTs/cdVmTvxqo="; "2.0.0".sha256 = "sha256-dpOmrHYUXBBS9kmmz7puzufxlbNpIZofpcTvJFLG5DI="; + "1.19.0".sha256 = "sha256-3kxS3qA+7WwQkXoFC/+kq3OEkv4kMEzQ/G3aXPsp1Q4="; "1.18.0".sha256 = "sha256-mJJ/zvM2WtmBZU3U4oid/zCMvDXei/93v5hwyyqwiiY="; "1.17.0".sha256 = "sha256-bUfoSTMiW/GzC1jKFay6DRqGzKPuLOSUsO6/wPSFwNg="; "1.16.0".sha256 = "sha256-gXTKhRgSGeRBUnwdDezMsMKbOvxdffT+kViZ9e1gEz0="; diff --git a/pkgs/development/coq-modules/multinomials/default.nix b/pkgs/development/coq-modules/multinomials/default.nix index d2bb38f8683f5..5547e22bc59fe 100644 --- a/pkgs/development/coq-modules/multinomials/default.nix +++ b/pkgs/development/coq-modules/multinomials/default.nix @@ -9,9 +9,10 @@ inherit version; defaultVersion = with lib.versions; lib.switch [ coq.version mathcomp.version ] [ - { cases = [ (isGe "8.16") (isGe "2.1.0") ]; out = "2.1.0"; } - { cases = [ (isGe "8.16") "2.0.0" ]; out = "2.0.0"; } - { cases = [ (isGe "8.15") (range "1.15.0" "1.18.0") ]; out = "1.6.0"; } + { cases = [ (range "8.17" "8.19") (isGe "2.1.0") ]; out = "2.2.0"; } + { cases = [ (range "8.16" "8.18") "2.1.0" ]; out = "2.1.0"; } + { cases = [ (range "8.16" "8.18") "2.0.0" ]; out = "2.0.0"; } + { cases = [ (isGe "8.15") (range "1.15.0" "1.19.0") ]; out = "1.6.0"; } { cases = [ (isGe "8.10") (range "1.13.0" "1.17.0") ]; out = "1.5.6"; } { cases = [ (range "8.10" "8.16") (range "1.12.0" "1.15.0") ]; out = "1.5.5"; } { cases = [ (range "8.10" "8.12") "1.12.0" ]; out = "1.5.3"; } @@ -21,6 +22,7 @@ { cases = [ "8.6" (range "1.6" "1.7") ]; out = "1.1"; } ] null; release = { + "2.2.0".sha256 = "sha256-Cie6paweITwPZy6ej9+qIvHFWknVR382uJPW927t/fo="; "2.1.0".sha256 = "sha256-QT91SBJ6DXhyg4j/okTvPP6yj2DnnPbnSlJ/p8pvZbY="; "2.0.0".sha256 = "sha256-2zWHzMBsO2j8EjN7CgCmKQcku9Be8aVlme0LD5p4ab8="; "1.6.0".sha256 = "sha256-lEM+sjqajIOm1c3lspHqcSIARgMR9RHbTQH4veHLJfU="; diff --git a/pkgs/development/coq-modules/paco/default.nix b/pkgs/development/coq-modules/paco/default.nix index 0d394617aa320..717100ddfe259 100644 --- a/pkgs/development/coq-modules/paco/default.nix +++ b/pkgs/development/coq-modules/paco/default.nix @@ -5,7 +5,7 @@ mkCoqDerivation { owner = "snu-sf"; inherit version; defaultVersion = with lib.versions; lib.switch coq.coq-version [ - { case = range "8.13" "8.18"; out = "4.2.0"; } + { case = range "8.13" "8.19"; out = "4.2.0"; } { case = range "8.12" "8.17"; out = "4.1.2"; } { case = range "8.9" "8.13"; out = "4.1.1"; } { case = range "8.6" "8.13"; out = "4.0.2"; } diff --git a/pkgs/development/coq-modules/reglang/default.nix b/pkgs/development/coq-modules/reglang/default.nix index fd5a37c677e26..325b909d45e47 100644 --- a/pkgs/development/coq-modules/reglang/default.nix +++ b/pkgs/development/coq-modules/reglang/default.nix @@ -5,14 +5,16 @@ mkCoqDerivation { releaseRev = v: "v${v}"; + release."1.2.1".sha256 = "sha256-giCRK8wzpVVzXAkFAieQDWqSsP7upSJSUUHkwG4QqO4="; release."1.2.0".sha256 = "sha256-gSqQ7D2HLwM4oYopTWkMFYfYXxsH/7VxI3AyrLwNf3o="; release."1.1.3".sha256 = "sha256-kaselYm8K0JBsTlcI6K24m8qpv8CZ9+VNDJrOtFaExg="; release."1.1.2".sha256 = "sha256-SEnMilLNxh6a3oiDNGLaBr8quQ/nO2T9Fwdf/1il2Yk="; inherit version; defaultVersion = with lib.versions; lib.switch [ coq.coq-version mathcomp.version ] [ - { cases = [ (range "8.16" "8.18") (isGe "2.0.0") ]; out = "1.2.0"; } - { cases = [ (range "8.10" "8.18") (isLt "2.0.0") ]; out = "1.1.3"; } + { cases = [ (range "8.16" "8.19") (isGe "2.0.0") ]; out = "1.2.1"; } + { cases = [ (range "8.16" "8.18") (range "2.0.0" "2.1.0") ]; out = "1.2.0"; } + { cases = [ (range "8.10" "8.19") (isLt "2.0.0") ]; out = "1.1.3"; } ] null; diff --git a/pkgs/development/coq-modules/smtcoq/cvc4.nix b/pkgs/development/coq-modules/smtcoq/cvc4.nix index 5b555cc8fc080..220c24a2b8301 100644 --- a/pkgs/development/coq-modules/smtcoq/cvc4.nix +++ b/pkgs/development/coq-modules/smtcoq/cvc4.nix @@ -3,6 +3,8 @@ , python3 }: +let cln' = cln.override { gccStdenv = stdenv; }; in + stdenv.mkDerivation rec { pname = "cvc4"; version = "1.6"; @@ -15,7 +17,7 @@ stdenv.mkDerivation rec { # Build fails with GNUmake 4.4 nativeBuildInputs = [ autoreconfHook gnumake42 pkg-config ]; buildInputs = [ gmp swig libantlr3c boost python3 ] - ++ lib.optionals stdenv.isLinux [ cln ]; + ++ lib.optionals stdenv.isLinux [ cln' ]; configureFlags = [ "--enable-language-bindings=c" diff --git a/pkgs/development/coq-modules/vscoq-language-server/default.nix b/pkgs/development/coq-modules/vscoq-language-server/default.nix new file mode 100644 index 0000000000000..e70094b994eb9 --- /dev/null +++ b/pkgs/development/coq-modules/vscoq-language-server/default.nix @@ -0,0 +1,32 @@ +{ metaFetch, mkCoqDerivation, coq, lib, glib, gnome, wrapGAppsHook, + version ? null }: + +let ocamlPackages = coq.ocamlPackages; + defaultVersion = lib.switch coq.coq-version [ + { case = "8.18"; out = "2.0.3+coq8.18"; } + ] null; + location = { domain = "github.com"; owner = "coq-community"; repo = "vscoq"; }; + fetch = metaFetch ({ + release."2.0.3+coq8.18".sha256 = "sha256-VXhHCP6Ni5/OcsgoI1EbJfYCpXzwkuR8kbbKrl6dfjU="; + release."2.0.3+coq8.18".rev = "v2.0.3+coq8.18"; + inherit location; }); + fetched = fetch (if version != null then version else defaultVersion); +in +ocamlPackages.buildDunePackage { + pname = "vscoq-language-server"; + inherit (fetched) version; + src = "${fetched.src}/language-server"; + buildInputs = + [ coq glib gnome.adwaita-icon-theme wrapGAppsHook ] ++ + (with ocamlPackages; [ findlib + lablgtk3-sourceview3 yojson zarith ppx_inline_test + ppx_assert ppx_sexp_conv ppx_deriving ppx_import sexplib + ppx_yojson_conv lsp sel ]); + + meta = with lib; { + description = "Language server for the vscoq vscode/codium extension"; + homepage = "https://github.com/coq-community/vscoq"; + maintainers = with maintainers; [ cohencyril ]; + license = licenses.mit; + } // optionalAttrs (fetched.broken or false) { coqFilter = true; broken = true; }; +} diff --git a/pkgs/development/cuda-modules/backend-stdenv.nix b/pkgs/development/cuda-modules/backend-stdenv.nix index 3b4c8d47c5e8b..bcca7118b163b 100644 --- a/pkgs/development/cuda-modules/backend-stdenv.nix +++ b/pkgs/development/cuda-modules/backend-stdenv.nix @@ -13,18 +13,14 @@ let gccMajorVersion = nvccCompatibilities.${cudaVersion}.gccMaxMajorVersion; cudaStdenv = stdenvAdapters.useLibsFrom stdenv pkgs."gcc${gccMajorVersion}Stdenv"; passthruExtra = { - nixpkgsCompatibleLibstdcxx = lib.warn "cudaPackages.backendStdenv.nixpkgsCompatibleLibstdcxx is misnamed, deprecated, and will be removed after 24.05" cudaStdenv.cc.cxxStdlib.package; - # cc already exposed + # cudaPackages.backendStdenv.nixpkgsCompatibleLibstdcxx has been removed, + # if you need it you're likely doing something wrong. There has been a + # warning here for a month or so. Now we can no longer return any + # meaningful value in its place and drop the attribute entirely. }; assertCondition = true; in -# We should use libstdc++ at least as new as nixpkgs' stdenv's one. -assert let - cxxStdlibCuda = cudaStdenv.cc.cxxStdlib.package; - cxxStdlibNixpkgs = stdenv.cc.cxxStdlib.package; -in -((stdenv.cc.cxxStdlib.kind or null) == "libstdc++") --> lib.versionAtLeast cxxStdlibCuda.version cxxStdlibNixpkgs.version; + /* TODO: Consider testing whether we in fact use the newer libstdc++ */ lib.extendDerivation assertCondition passthruExtra cudaStdenv diff --git a/pkgs/development/cuda-modules/cuda-library-samples/extension.nix b/pkgs/development/cuda-modules/cuda-library-samples/extension.nix new file mode 100644 index 0000000000000..4cb34af732095 --- /dev/null +++ b/pkgs/development/cuda-modules/cuda-library-samples/extension.nix @@ -0,0 +1,14 @@ +{hostPlatform, lib}: +let + # Samples are built around the CUDA Toolkit, which is not available for + # aarch64. Check for both CUDA version and platform. + platformIsSupported = hostPlatform.isx86_64 && hostPlatform.isLinux; + + # Build our extension + extension = + final: _: + lib.attrsets.optionalAttrs platformIsSupported { + cuda-library-samples = final.callPackage ./generic.nix {}; + }; +in +extension diff --git a/pkgs/development/cuda-modules/cuda-library-samples/generic.nix b/pkgs/development/cuda-modules/cuda-library-samples/generic.nix new file mode 100644 index 0000000000000..d4182536654e1 --- /dev/null +++ b/pkgs/development/cuda-modules/cuda-library-samples/generic.nix @@ -0,0 +1,85 @@ +{ + lib, + backendStdenv, + fetchFromGitHub, + cmake, + addOpenGLRunpath, + cudatoolkit, + cutensor, +}: + +let + rev = "5aab680905d853bce0dbad4c488e4f7e9f7b2302"; + src = fetchFromGitHub { + owner = "NVIDIA"; + repo = "CUDALibrarySamples"; + inherit rev; + sha256 = "0gwgbkq05ygrfgg5hk07lmap7n7ampxv0ha1axrv8qb748ph81xs"; + }; + commonAttrs = { + version = lib.strings.substring 0 7 rev + "-" + lib.versions.majorMinor cudatoolkit.version; + nativeBuildInputs = [ + cmake + addOpenGLRunpath + ]; + buildInputs = [cudatoolkit]; + postFixup = '' + for exe in $out/bin/*; do + addOpenGLRunpath $exe + done + ''; + meta = { + description = "examples of using libraries using CUDA"; + longDescription = '' + CUDA Library Samples contains examples demonstrating the use of + features in the math and image processing libraries cuBLAS, cuTENSOR, + cuSPARSE, cuSOLVER, cuFFT, cuRAND, NPP and nvJPEG. + ''; + license = lib.licenses.bsd3; + maintainers = with lib.maintainers; [obsidian-systems-maintenance] ++ lib.teams.cuda.members; + }; + }; +in + +{ + cublas = backendStdenv.mkDerivation ( + commonAttrs + // { + pname = "cuda-library-samples-cublas"; + + src = "${src}/cuBLASLt"; + } + ); + + cusolver = backendStdenv.mkDerivation ( + commonAttrs + // { + pname = "cuda-library-samples-cusolver"; + + src = "${src}/cuSOLVER"; + + sourceRoot = "cuSOLVER/gesv"; + } + ); + + cutensor = backendStdenv.mkDerivation ( + commonAttrs + // { + pname = "cuda-library-samples-cutensor"; + + src = "${src}/cuTENSOR"; + + buildInputs = [cutensor]; + + cmakeFlags = ["-DCUTENSOR_EXAMPLE_BINARY_INSTALL_DIR=${builtins.placeholder "out"}/bin"]; + + # CUTENSOR_ROOT is double escaped + postPatch = '' + substituteInPlace CMakeLists.txt \ + --replace "\''${CUTENSOR_ROOT}/include" "${cutensor.dev}/include" + ''; + + CUTENSOR_ROOT = cutensor; + } + ); +} diff --git a/pkgs/development/cuda-modules/cuda-samples/extension.nix b/pkgs/development/cuda-modules/cuda-samples/extension.nix new file mode 100644 index 0000000000000..d41da90cd5d0e --- /dev/null +++ b/pkgs/development/cuda-modules/cuda-samples/extension.nix @@ -0,0 +1,42 @@ +{ + cudaVersion, + hostPlatform, + lib, +}: +let + cudaVersionToHash = { + "10.0" = "sha256-XAI6iiPpDVbZtFoRaP1s6VKpu9aV3bwOqqkw33QncP8="; + "10.1" = "sha256-DY8E2FKCFj27jPgQEB1qE9HcLn7CfSiVGdFm+yFQE+k="; + "10.2" = "sha256-JDW4i7rC2MwIRvKRmUd6UyJZI9bWNHqZijrB962N4QY="; + "11.0" = "sha256-BRwQuUvJEVi1mTbVtGODH8Obt7rXFfq6eLH9wxCTe9g="; + "11.1" = "sha256-kM8gFItBaTpkoT34vercmQky9qTFtsXjXMGjCMrsUc4="; + "11.2" = "sha256-gX6V98dRwdAQIsvru2byDLiMswCW2lrHSBSJutyWONw="; + "11.3" = "sha256-34MdMFS2cufNbZVixFdSUDFfLeuKIGFwLBL9d81acU0="; + "11.4" = "sha256-Ewu+Qk6GtGXC37CCn1ZXHc0MQAuyXCGf3J6T4cucTSA="; + "11.5" = "sha256-AKRZbke0K59lakhTi8dX2cR2aBuWPZkiQxyKaZTvHrI="; + "11.6" = "sha256-AsLNmAplfuQbXg9zt09tXAuFJ524EtTYsQuUlV1tPkE="; + # The tag 11.7 of cuda-samples does not exist + "11.8" = "sha256-7+1P8+wqTKUGbCUBXGMDO9PkxYr2+PLDx9W2hXtXbuc="; + "12.0" = "sha256-Lj2kbdVFrJo5xPYPMiE4BS7Z8gpU5JLKXVJhZABUe/g="; + "12.1" = "sha256-xE0luOMq46zVsIEWwK4xjLs7NorcTIi9gbfZPVjIlqo="; + "12.2" = "sha256-pOy0qfDjA/Nr0T9PNKKefK/63gQnJV2MQsN2g3S2yng="; + "12.3" = "sha256-fjVp0G6uRCWxsfe+gOwWTN+esZfk0O5uxS623u0REAk="; + }; + + # Samples are built around the CUDA Toolkit, which is not available for + # aarch64. Check for both CUDA version and platform. + cudaVersionIsSupported = cudaVersionToHash ? ${cudaVersion}; + platformIsSupported = hostPlatform.isx86_64; + isSupported = cudaVersionIsSupported && platformIsSupported; + + # Build our extension + extension = + final: _: + lib.attrsets.optionalAttrs isSupported { + cuda-samples = final.callPackage ./generic.nix { + inherit cudaVersion; + hash = cudaVersionToHash.${cudaVersion}; + }; + }; +in +extension diff --git a/pkgs/development/cuda-modules/cuda-samples/generic.nix b/pkgs/development/cuda-modules/cuda-samples/generic.nix new file mode 100644 index 0000000000000..fb3d7cc99da95 --- /dev/null +++ b/pkgs/development/cuda-modules/cuda-samples/generic.nix @@ -0,0 +1,79 @@ +{ + autoAddOpenGLRunpathHook, + backendStdenv, + cmake, + cudatoolkit, + cudaVersion, + fetchFromGitHub, + fetchpatch, + freeimage, + glfw3, + hash, + lib, + pkg-config, +}: +let + inherit (lib) lists strings; +in +backendStdenv.mkDerivation ( + finalAttrs: { + strictDeps = true; + + pname = "cuda-samples"; + version = cudaVersion; + + src = fetchFromGitHub { + owner = "NVIDIA"; + repo = finalAttrs.pname; + rev = "v${finalAttrs.version}"; + inherit hash; + }; + + nativeBuildInputs = + [ + autoAddOpenGLRunpathHook + pkg-config + ] + # CMake has to run as a native, build-time dependency for libNVVM samples. + # However, it's not the primary build tool -- that's still make. + # As such, we disable CMake's build system. + ++ lists.optionals (strings.versionAtLeast finalAttrs.version "12.2") [cmake]; + + dontUseCmakeConfigure = true; + + buildInputs = [ + cudatoolkit + freeimage + glfw3 + ]; + + # See https://github.com/NVIDIA/cuda-samples/issues/75. + patches = lib.optionals (finalAttrs.version == "11.3") [ + (fetchpatch { + url = "https://github.com/NVIDIA/cuda-samples/commit/5c3ec60faeb7a3c4ad9372c99114d7bb922fda8d.patch"; + hash = "sha256-0XxdmNK9MPpHwv8+qECJTvXGlFxc+fIbta4ynYprfpU="; + }) + ]; + + enableParallelBuilding = true; + + preConfigure = '' + export CUDA_PATH=${cudatoolkit} + ''; + + installPhase = '' + runHook preInstall + + install -Dm755 -t $out/bin bin/${backendStdenv.hostPlatform.parsed.cpu.name}/${backendStdenv.hostPlatform.parsed.kernel.name}/release/* + + runHook postInstall + ''; + + meta = { + description = "Samples for CUDA Developers which demonstrates features in CUDA Toolkit"; + # CUDA itself is proprietary, but these sample apps are not. + license = lib.licenses.bsd3; + maintainers = with lib.maintainers; [obsidian-systems-maintenance] ++ lib.teams.cuda.members; + }; + } +) diff --git a/pkgs/development/cuda-modules/cuda/overrides.nix b/pkgs/development/cuda-modules/cuda/overrides.nix index b4b59ce1f4a6e..f43d649afbbf3 100644 --- a/pkgs/development/cuda-modules/cuda/overrides.nix +++ b/pkgs/development/cuda-modules/cuda/overrides.nix @@ -23,9 +23,9 @@ attrsets.filterAttrs (attr: _: (builtins.hasAttr attr prev)) { final.pkgs.rdma-core ]; # Before 11.7 libcufile depends on itself for some reason. - env.autoPatchelfIgnoreMissingDeps = - prevAttrs.env.autoPatchelfIgnoreMissingDeps - + strings.optionalString (cudaVersionOlder "11.7") " libcufile.so.0"; + autoPatchelfIgnoreMissingDeps = + prevAttrs.autoPatchelfIgnoreMissingDeps + ++ lists.optionals (cudaVersionOlder "11.7") [ "libcufile.so.0" ]; } ); @@ -44,6 +44,11 @@ attrsets.filterAttrs (attr: _: (builtins.hasAttr attr prev)) { cuda_cudart = prev.cuda_cudart.overrideAttrs ( prevAttrs: { + # Remove once cuda-find-redist-features has a special case for libcuda + outputs = + prevAttrs.outputs + ++ lists.optionals (!(builtins.elem "stubs" prevAttrs.outputs)) [ "stubs" ]; + allowFHSReferences = false; # The libcuda stub's pkg-config doesn't follow the general pattern: @@ -64,13 +69,24 @@ attrsets.filterAttrs (attr: _: (builtins.hasAttr attr prev)) { ln -s libcuda.so lib/stubs/libcuda.so.1 fi ''; + + postFixup = + prevAttrs.postFixup or "" + + '' + moveToOutput lib/stubs "$stubs" + ln -s "$stubs"/lib/stubs/* "$stubs"/lib/ + ln -s "$stubs"/lib/stubs "''${!outputLib}/lib/stubs" + ''; } ); cuda_compat = prev.cuda_compat.overrideAttrs ( prevAttrs: { - env.autoPatchelfIgnoreMissingDeps = - prevAttrs.env.autoPatchelfIgnoreMissingDeps + " libnvrm_gpu.so libnvrm_mem.so libnvdla_runtime.so"; + autoPatchelfIgnoreMissingDeps = prevAttrs.autoPatchelfIgnoreMissingDeps ++ [ + "libnvrm_gpu.so" + "libnvrm_mem.so" + "libnvdla_runtime.so" + ]; # `cuda_compat` only works on aarch64-linux, and only when building for Jetson devices. badPlatformsConditions = prevAttrs.badPlatformsConditions // { "Trying to use cuda_compat on aarch64-linux targeting non-Jetson devices" = @@ -96,7 +112,6 @@ attrsets.filterAttrs (attr: _: (builtins.hasAttr attr prev)) { useCcForLibs = true; gccForLibs = ccForLibs-wrapper.cc; }; - cxxStdlibDir = ccForLibs-wrapper.cxxStdlib.solib; in { @@ -133,7 +148,6 @@ attrsets.filterAttrs (attr: _: (builtins.hasAttr attr prev)) { # Fix a compatible backend compiler PATH += ${lib.getBin cc}/bin: - LIBRARIES += "-L${cxxStdlibDir}/lib" # Expose the split-out nvvm LIBRARIES =+ -L''${!outputBin}/nvvm/lib @@ -197,20 +211,63 @@ attrsets.filterAttrs (attr: _: (builtins.hasAttr attr prev)) { ); nsight_systems = prev.nsight_systems.overrideAttrs ( - prevAttrs: { - nativeBuildInputs = prevAttrs.nativeBuildInputs ++ [final.pkgs.qt5.wrapQtAppsHook]; + prevAttrs: + let + qt = if lib.versionOlder prevAttrs.version "2022.4.2.1" then final.pkgs.qt5 else final.pkgs.qt6; + qtwayland = + if lib.versions.major qt.qtbase.version == "5" then + lib.getBin qt.qtwayland + else + lib.getLib qt.qtwayland; + qtWaylandPlugins = "${qtwayland}/${qt.qtbase.qtPluginPrefix}"; + in + { + # An ad hoc replacement for + # https://github.com/ConnorBaker/cuda-redist-find-features/issues/11 + env.rmPatterns = toString [ + "nsight-systems/*/*/libQt*" + "nsight-systems/*/*/libstdc*" + "nsight-systems/*/*/libboost*" + "nsight-systems/*/*/lib{ssl,ssh,crypto}*" + "nsight-systems/*/*/lib{arrow,jpeg}*" + "nsight-systems/*/*/Mesa" + "nsight-systems/*/*/python/bin/python" + "nsight-systems/*/*/libexec" + "nsight-systems/*/*/Plugins" + ]; + postPatch = + prevAttrs.postPatch or "" + + '' + for path in $rmPatterns ; do + rm -r "$path" + done + ''; + nativeBuildInputs = prevAttrs.nativeBuildInputs ++ [ qt.wrapQtAppsHook ]; buildInputs = prevAttrs.buildInputs ++ [ + final.cuda_cudart.stubs final.pkgs.alsa-lib + final.pkgs.boost178 final.pkgs.e2fsprogs + final.pkgs.gst_all_1.gst-plugins-base + final.pkgs.gst_all_1.gstreamer final.pkgs.nss final.pkgs.numactl final.pkgs.pulseaudio + final.pkgs.rdma-core + final.pkgs.ucx final.pkgs.wayland final.pkgs.xorg.libXcursor final.pkgs.xorg.libXdamage final.pkgs.xorg.libXrandr final.pkgs.xorg.libXtst + qt.qtbase + (qt.qtdeclarative or qt.full) + (qt.qtsvg or qt.full) + qtWaylandPlugins ]; + + # Older releases require boost 1.70 deprecated in Nixpkgs + meta.broken = prevAttrs.meta.broken or false || lib.versionOlder final.cudaVersion "11.8"; } ); diff --git a/pkgs/development/cuda-modules/cudatoolkit/default.nix b/pkgs/development/cuda-modules/cudatoolkit/default.nix index 57d1a0461e13f..aca0c7ad0b78f 100644 --- a/pkgs/development/cuda-modules/cudatoolkit/default.nix +++ b/pkgs/development/cuda-modules/cudatoolkit/default.nix @@ -44,6 +44,7 @@ rdma-core, ucx, rsync, + libglvnd, }: let @@ -123,6 +124,7 @@ backendStdenv.mkDerivation rec { unixODBC alsa-lib wayland + libglvnd ] ++ lib.optionals (lib.versionAtLeast version "11.8") [ (lib.getLib libtiff) diff --git a/pkgs/development/cuda-modules/generic-builders/manifest.nix b/pkgs/development/cuda-modules/generic-builders/manifest.nix index d39c659a7cb93..5e837fa36b5e6 100644 --- a/pkgs/development/cuda-modules/generic-builders/manifest.nix +++ b/pkgs/development/cuda-modules/generic-builders/manifest.nix @@ -47,6 +47,8 @@ let # The redistArch is the name of the architecture for which the redistributable is built. # It is `"unsupported"` if the redistributable is not supported on the target platform. redistArch = flags.getRedistArch hostPlatform.system; + + sourceMatchesHost = flags.getNixSystem redistArch == stdenv.hostPlatform.system; in backendStdenv.mkDerivation ( finalAttrs: { @@ -136,7 +138,9 @@ backendStdenv.mkDerivation ( # badPlatformsConditions :: AttrSet Bool # Sets `meta.badPlatforms = meta.platforms` if any of the conditions are true. # Example: Broken on a specific architecture when some condition is met (like targeting Jetson). - badPlatformsConditions = { }; + badPlatformsConditions = { + "No source" = !sourceMatchesHost; + }; # src :: Optional Derivation src = trivial.pipe redistArch [ @@ -276,11 +280,10 @@ backendStdenv.mkDerivation ( ''; # libcuda needs to be resolved during runtime - # NOTE: Due to the use of __structuredAttrs, we can't use a list for autoPatchelfIgnoreMissingDeps, since it - # will take only the first value. Instead, we produce a string with the values separated by spaces. - # Using the `env` attribute ensures that the value is representable as one of the primitives allowed by - # bash's environment variables. - env.autoPatchelfIgnoreMissingDeps = "libcuda.so libcuda.so.*"; + autoPatchelfIgnoreMissingDeps = [ + "libcuda.so" + "libcuda.so.*" + ]; # The out output leverages the same functionality which backs the `symlinkJoin` function in # Nixpkgs: diff --git a/pkgs/development/cuda-modules/generic-builders/multiplex.nix b/pkgs/development/cuda-modules/generic-builders/multiplex.nix index 6353b07545a4a..f2a9c6840ecd0 100644 --- a/pkgs/development/cuda-modules/generic-builders/multiplex.nix +++ b/pkgs/development/cuda-modules/generic-builders/multiplex.nix @@ -52,7 +52,7 @@ let # - Package: ../modules/${pname}/releases/package.nix # FIXME: do this at the module system level - propagatePlatforms = lib.mapAttrs (platform: subset: map (r: r // { inherit platform; }) subset); + propagatePlatforms = lib.mapAttrs (redistArch: packages: map (p: { inherit redistArch; } // p) packages); # All releases across all platforms # See ../modules/${pname}/releases/releases.nix @@ -63,11 +63,11 @@ let # computeName :: Package -> String computeName = {version, ...}: mkVersionedPackageName pname version; - # Check whether a package supports our CUDA version + # Check whether a package supports our CUDA version and platform. # isSupported :: Package -> Bool isSupported = package: - !(strings.hasPrefix "unsupported" package.platform) + redistArch == package.redistArch && strings.versionAtLeast cudaVersion package.minCudaVersion && strings.versionAtLeast package.maxCudaVersion cudaVersion; @@ -76,14 +76,22 @@ let # Value is `"unsupported"` if the platform is not supported. redistArch = flags.getRedistArch hostPlatform.system; - allReleases = lists.flatten (builtins.attrValues releaseSets); + preferable = + p1: p2: (isSupported p2 -> isSupported p1) && (strings.versionAtLeast p1.version p2.version); # All the supported packages we can build for our platform. # perSystemReleases :: List Package - perSystemReleases = releaseSets.${redistArch} or [ ]; + allReleases = lib.pipe releaseSets + [ + (lib.attrValues) + (lists.flatten) + (lib.groupBy (p: lib.versions.majorMinor p.version)) + (lib.mapAttrs (_: builtins.sort preferable)) + (lib.mapAttrs (_: lib.take 1)) + (lib.attrValues) + (lib.concatMap lib.trivial.id) + ]; - preferable = - p1: p2: (isSupported p2 -> isSupported p1) && (strings.versionAtLeast p1.version p2.version); newest = builtins.head (builtins.sort preferable allReleases); # A function which takes the `final` overlay and the `package` being built and returns @@ -107,7 +115,7 @@ let buildPackage = package: let - shims = final.callPackage shimsFn {inherit package redistArch;}; + shims = final.callPackage shimsFn {inherit package; inherit (package) redistArch; }; name = computeName package; drv = final.callPackage ./manifest.nix { inherit pname; @@ -119,7 +127,7 @@ let attrsets.nameValuePair name fixedDrv; # versionedDerivations :: AttrSet Derivation - versionedDerivations = builtins.listToAttrs (lists.map buildPackage perSystemReleases); + versionedDerivations = builtins.listToAttrs (lists.map buildPackage allReleases); defaultDerivation = { ${pname} = (buildPackage newest).value; }; in diff --git a/pkgs/development/cuda-modules/saxpy/default.nix b/pkgs/development/cuda-modules/saxpy/default.nix index 9c6692cb0b313..68c60e2d84464 100644 --- a/pkgs/development/cuda-modules/saxpy/default.nix +++ b/pkgs/development/cuda-modules/saxpy/default.nix @@ -16,6 +16,7 @@ let libcublas setupCudaHook ; + inherit (lib) getDev getLib getOutput; in backendStdenv.mkDerivation { pname = "saxpy"; @@ -36,9 +37,9 @@ backendStdenv.mkDerivation { buildInputs = lib.optionals (lib.versionOlder cudaVersion "11.4") [cudatoolkit] ++ lib.optionals (lib.versionAtLeast cudaVersion "11.4") [ - libcublas.dev - libcublas.lib - libcublas.static + (getDev libcublas) + (getLib libcublas) + (getOutput "static" libcublas) cuda_cudart ] ++ lib.optionals (lib.versionAtLeast cudaVersion "12.0") [cuda_cccl]; @@ -50,10 +51,11 @@ backendStdenv.mkDerivation { )) ]; - meta = { + meta = rec { description = "A simple (Single-precision AX Plus Y) FindCUDAToolkit.cmake example for testing cross-compilation"; license = lib.licenses.mit; maintainers = lib.teams.cuda.members; platforms = lib.platforms.unix; + badPlatforms = lib.optionals flags.isJetsonBuild platforms; }; } diff --git a/pkgs/development/cuda-modules/setup-hooks/extension.nix b/pkgs/development/cuda-modules/setup-hooks/extension.nix index 10f126bc12fbf..9e352bd5b3af0 100644 --- a/pkgs/development/cuda-modules/setup-hooks/extension.nix +++ b/pkgs/development/cuda-modules/setup-hooks/extension.nix @@ -53,7 +53,7 @@ final: _: { autoAddCudaCompatRunpathHook = final.callPackage ( - {makeSetupHook, cuda_compat ? throw "autoAddCudaCompatRunpathHook: No cuda_compat for CUDA ${final.cudaMajorMinorVersion}" }: + {makeSetupHook, cuda_compat ? null }: makeSetupHook { name = "auto-add-cuda-compat-runpath-hook"; @@ -61,7 +61,12 @@ final: _: { # Hotfix Ofborg evaluation libcudaPath = if final.flags.isJetsonBuild then "${cuda_compat}/compat" else null; }; + meta.broken = !final.flags.isJetsonBuild; + + # Pre-cuda_compat CUDA release: + meta.badPlatforms = final.lib.optionals (cuda_compat == null) final.lib.platforms.all; + meta.platforms = cuda_compat.meta.platforms or [ ]; } ./auto-add-cuda-compat-runpath.sh ) diff --git a/pkgs/development/embedded/arduino/arduino-cli/default.nix b/pkgs/development/embedded/arduino/arduino-cli/default.nix index c41f884d4fe16..fcc4c84e7cbac 100644 --- a/pkgs/development/embedded/arduino/arduino-cli/default.nix +++ b/pkgs/development/embedded/arduino/arduino-cli/default.nix @@ -4,13 +4,13 @@ let pkg = buildGoModule rec { pname = "arduino-cli"; - version = "0.34.2"; + version = "0.35.2"; src = fetchFromGitHub { owner = "arduino"; repo = pname; - rev = version; - hash = "sha256-X7vrcaJkVqzZoaIFLWJhhdlgRpckLG69uVmUUZd/XXY="; + rev = "v${version}"; + hash = "sha256-ctgDuWbNLMyQrxnarTbCtGXM5G+bPeS4Xa7eTbkFo0k="; }; nativeBuildInputs = [ @@ -23,7 +23,7 @@ let subPackages = [ "." ]; - vendorHash = "sha256-cr5D7QDh65xWZJ4gq32ehklwrHWyQEWW/FZZ4gPTJBk="; + vendorHash = "sha256-y7YxcBFjKcQK6ilCKOyoszq64/0xG5GgTehKrKThknU="; postPatch = let skipTests = [ diff --git a/pkgs/development/embedded/espflash/default.nix b/pkgs/development/embedded/espflash/default.nix new file mode 100644 index 0000000000000..8b3540111a719 --- /dev/null +++ b/pkgs/development/embedded/espflash/default.nix @@ -0,0 +1,39 @@ +{ lib +, rustPlatform +, fetchCrate +, pkg-config +, stdenv +, udev +, Security +, SystemConfiguration +}: + +rustPlatform.buildRustPackage rec { + pname = "espflash"; + version = "2.1.0"; + + src = fetchCrate { + inherit pname version; + hash = "sha256-Gd+8pA36mO+BCA0EFshboBi0etNjsiQFQU1wBYf/o6I="; + }; + + nativeBuildInputs = [ pkg-config ]; + + buildInputs = lib.optionals stdenv.isLinux [ + udev + ] ++ lib.optionals stdenv.isDarwin [ + Security + SystemConfiguration + ]; + + cargoHash = "sha256-IObAbsyrVBXt5zldirRezU7vS3R3aUihMFy2yIRWIlk="; + + meta = with lib; { + description = "Serial flasher utility for Espressif SoCs and modules"; + homepage = "https://github.com/esp-rs/espflash"; + changelog = "https://github.com/esp-rs/espflash/blob/v${version}/CHANGELOG.md"; + mainProgram = "espflash"; + license = with licenses; [ asl20 /* or */ mit ]; + maintainers = with maintainers; [ newam ]; + }; +} diff --git a/pkgs/development/embedded/platformio/core.nix b/pkgs/development/embedded/platformio/core.nix index aa4e8e9600f66..d2d4418f13b9c 100644 --- a/pkgs/development/embedded/platformio/core.nix +++ b/pkgs/development/embedded/platformio/core.nix @@ -72,7 +72,8 @@ with python3Packages; buildPythonApplication rec { uvicorn wsproto zeroconf - + ] ++ lib.optionals (stdenv.isDarwin && stdenv.isAarch64) [ + chardet ]; preCheck = '' diff --git a/pkgs/development/embedded/rshell/default.nix b/pkgs/development/embedded/rshell/default.nix index a537af3692b48..591331464e3ad 100644 --- a/pkgs/development/embedded/rshell/default.nix +++ b/pkgs/development/embedded/rshell/default.nix @@ -8,13 +8,13 @@ buildPythonApplication rec { pname = "rshell"; - version = "0.0.31"; + version = "0.0.32"; disabled = pythonOlder "3.4"; src = fetchPypi { inherit pname version; - sha256 = "7942b758a9ae5c6ff46516b0317f437dfce9f0721f3a3b635ebd501c9cd38fb9"; + sha256 = "sha256-frIwZ21JzVgxRS+KouBjDShHCP1lCoUwwySy2oFGcJ8="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/embedded/stm32/stm32cubemx/default.nix b/pkgs/development/embedded/stm32/stm32cubemx/default.nix index 5cab499f7c883..4bcad690bbbdc 100644 --- a/pkgs/development/embedded/stm32/stm32cubemx/default.nix +++ b/pkgs/development/embedded/stm32/stm32cubemx/default.nix @@ -1,84 +1,115 @@ { fdupes +, buildFHSEnv , fetchzip , icoutils , imagemagick , jdk17 , lib , makeDesktopItem -, stdenv +, stdenvNoCC }: let iconame = "STM32CubeMX"; -in -stdenv.mkDerivation rec { - pname = "stm32cubemx"; - version = "6.10.0"; + package = stdenvNoCC.mkDerivation rec { + pname = "stm32cubemx"; + version = "6.10.0"; - src = fetchzip { - url = "https://sw-center.st.com/packs/resource/library/stm32cube_mx_v${builtins.replaceStrings ["."] [""] version}-lin.zip"; - sha256 = "sha256-B5Sf+zM7h9BiFqDYrLS0JdqZi3dGy6H9gAaJIN3izeM="; - stripRoot = false; - }; - - nativeBuildInputs = [ fdupes icoutils imagemagick ]; - desktopItem = makeDesktopItem { - name = "STM32CubeMX"; - exec = "stm32cubemx"; - desktopName = "STM32CubeMX"; - categories = [ "Development" ]; - icon = "stm32cubemx"; - comment = meta.description; - terminal = false; - startupNotify = false; - mimeTypes = [ - "x-scheme-handler/sgnl" - "x-scheme-handler/signalcaptcha" - ]; - }; + src = fetchzip { + url = "https://sw-center.st.com/packs/resource/library/stm32cube_mx_v${builtins.replaceStrings ["."] [""] version}-lin.zip"; + sha256 = "sha256-B5Sf+zM7h9BiFqDYrLS0JdqZi3dGy6H9gAaJIN3izeM="; + stripRoot = false; + }; - buildCommand = '' - mkdir -p $out/{bin,opt/STM32CubeMX,share/applications} + nativeBuildInputs = [ fdupes icoutils imagemagick ]; + desktopItem = makeDesktopItem { + name = "STM32CubeMX"; + exec = "stm32cubemx"; + desktopName = "STM32CubeMX"; + categories = [ "Development" ]; + icon = "stm32cubemx"; + comment = meta.description; + terminal = false; + startupNotify = false; + mimeTypes = [ + "x-scheme-handler/sgnl" + "x-scheme-handler/signalcaptcha" + ]; + }; - cp -r $src/MX/. $out/opt/STM32CubeMX/ - chmod +rx $out/opt/STM32CubeMX/STM32CubeMX + buildCommand = '' + mkdir -p $out/{bin,opt/STM32CubeMX,share/applications} - cat << EOF > $out/bin/${pname} - #!${stdenv.shell} - ${jdk17}/bin/java -jar $out/opt/STM32CubeMX/STM32CubeMX - EOF - chmod +x $out/bin/${pname} + cp -r $src/MX/. $out/opt/STM32CubeMX/ + chmod +rx $out/opt/STM32CubeMX/STM32CubeMX - icotool --extract $out/opt/STM32CubeMX/help/${iconame}.ico - fdupes -dN . > /dev/null - ls - for size in 16 24 32 48 64 128 256; do - mkdir -pv $out/share/icons/hicolor/"$size"x"$size"/apps - if [ $size -eq 256 ]; then - mv ${iconame}_*_"$size"x"$size"x32.png \ - $out/share/icons/hicolor/"$size"x"$size"/apps/${pname}.png - else - convert -resize "$size"x"$size" ${iconame}_*_256x256x32.png \ - $out/share/icons/hicolor/"$size"x"$size"/apps/${pname}.png - fi - done; + cat << EOF > $out/bin/${pname} + #!${stdenvNoCC.shell} + ${jdk17}/bin/java -jar $out/opt/STM32CubeMX/STM32CubeMX + EOF + chmod +x $out/bin/${pname} - cp ${desktopItem}/share/applications/*.desktop $out/share/applications - ''; + icotool --extract $out/opt/STM32CubeMX/help/${iconame}.ico + fdupes -dN . > /dev/null + ls + for size in 16 24 32 48 64 128 256; do + mkdir -pv $out/share/icons/hicolor/"$size"x"$size"/apps + if [ $size -eq 256 ]; then + mv ${iconame}_*_"$size"x"$size"x32.png \ + $out/share/icons/hicolor/"$size"x"$size"/apps/${pname}.png + else + convert -resize "$size"x"$size" ${iconame}_*_256x256x32.png \ + $out/share/icons/hicolor/"$size"x"$size"/apps/${pname}.png + fi + done; - meta = with lib; { - description = "A graphical tool for configuring STM32 microcontrollers and microprocessors"; - longDescription = '' - A graphical tool that allows a very easy configuration of STM32 - microcontrollers and microprocessors, as well as the generation of the - corresponding initialization C code for the Arm® Cortex®-M core or a - partial Linux® Device Tree for Arm® Cortex®-A core), through a - step-by-step process. + cp ${desktopItem}/share/applications/*.desktop $out/share/applications ''; - homepage = "https://www.st.com/en/development-tools/stm32cubemx.html"; - sourceProvenance = with sourceTypes; [ binaryBytecode ]; - license = licenses.unfree; - maintainers = with maintainers; [ angaz wucke13 ]; - platforms = platforms.all; + + meta = with lib; { + description = "A graphical tool for configuring STM32 microcontrollers and microprocessors"; + longDescription = '' + A graphical tool that allows a very easy configuration of STM32 + microcontrollers and microprocessors, as well as the generation of the + corresponding initialization C code for the Arm® Cortex®-M core or a + partial Linux® Device Tree for Arm® Cortex®-A core), through a + step-by-step process. + ''; + homepage = "https://www.st.com/en/development-tools/stm32cubemx.html"; + sourceProvenance = with sourceTypes; [ binaryBytecode ]; + license = licenses.unfree; + maintainers = with maintainers; [ angaz wucke13 ]; + platforms = [ "x86_64-linux" ]; + }; }; + in + buildFHSEnv { + inherit (package) pname meta; + runScript = "${package.outPath}/bin/stm32cubemx"; + targetPkgs = pkgs: + with pkgs; [ + alsa-lib + at-spi2-atk + cairo + cups + dbus + expat + glib + gtk3 + libdrm + libGL + libudev0-shim + libxkbcommon + mesa + nspr + nss + pango + xorg.libX11 + xorg.libxcb + xorg.libXcomposite + xorg.libXdamage + xorg.libXext + xorg.libXfixes + xorg.libXrandr + ]; } diff --git a/pkgs/development/embedded/svdtools/default.nix b/pkgs/development/embedded/svdtools/default.nix index ad270e0ba6515..c2b86d7bd66a6 100644 --- a/pkgs/development/embedded/svdtools/default.nix +++ b/pkgs/development/embedded/svdtools/default.nix @@ -5,14 +5,14 @@ rustPlatform.buildRustPackage rec { pname = "svdtools"; - version = "0.3.8"; + version = "0.3.9"; src = fetchCrate { inherit version pname; - hash = "sha256-daATz1bd5fwfYnfVbweJd/I6SsQyg2CC+MEZ5WLyZBw="; + hash = "sha256-agIr2jM0BqLSXod5V+p//bxcnrXe2+wW5RMq8GAAwnI="; }; - cargoHash = "sha256-TSLUBkPRab6cwlXJw8tHpqYjhLtVa+QJZq13Qj/0UzU="; + cargoHash = "sha256-z9GmFjABgvh2xf4nujnZUgHvKvChfP4Guox89PuuxV8="; meta = with lib; { description = "Tools to handle vendor-supplied, often buggy SVD files"; diff --git a/pkgs/development/gnuradio-modules/ais/default.nix b/pkgs/development/gnuradio-modules/ais/default.nix index 92abb23a5c572..1376fbe657a83 100644 --- a/pkgs/development/gnuradio-modules/ais/default.nix +++ b/pkgs/development/gnuradio-modules/ais/default.nix @@ -14,6 +14,7 @@ , icu , gnuradio , thrift +, gnuradioAtLeast }: mkDerivation rec { @@ -25,7 +26,7 @@ mkDerivation rec { rev = "2162103226f3dae43c8c2ab23b79483b84346665"; sha256 = "1vackka34722d8pcspfwj0j6gc9ic7dqq64sgkrpjm94sh3bmb0b"; }; - disabledForGRafter = "3.9"; + disabled = gnuradioAtLeast "3.9"; nativeBuildInputs = [ cmake diff --git a/pkgs/development/gnuradio-modules/grnet/default.nix b/pkgs/development/gnuradio-modules/grnet/default.nix index 817205cc0ca62..77390e52340ba 100644 --- a/pkgs/development/gnuradio-modules/grnet/default.nix +++ b/pkgs/development/gnuradio-modules/grnet/default.nix @@ -15,6 +15,7 @@ , libpcap , icu , thrift +, gnuradioAtLeast }: let @@ -53,7 +54,7 @@ mkDerivation { pname = "gr-grnet"; version = version.name; inherit src; - disabledForGRafter = "3.10"; + disabled = gnuradioAtLeast "3.10"; patches = [ # Use cross platform struct ip instead of iphdr @@ -73,7 +74,7 @@ mkDerivation { gmp libpcap icu - ] ++ (if lib.versionAtLeast gnuradio.versionAttr.major "3.9" then with python.pkgs; [ + ] ++ (if gnuradioAtLeast "3.9" then with python.pkgs; [ pybind11 numpy ] else [ diff --git a/pkgs/development/gnuradio-modules/gsm/default.nix b/pkgs/development/gnuradio-modules/gsm/default.nix index aef8539431238..9f184b7be7fb7 100644 --- a/pkgs/development/gnuradio-modules/gsm/default.nix +++ b/pkgs/development/gnuradio-modules/gsm/default.nix @@ -10,6 +10,7 @@ , python , libosmocore , osmosdr +, gnuradioAtLeast }: mkDerivation { @@ -21,7 +22,7 @@ mkDerivation { rev = "3ca05e6914ef29eb536da5dbec323701fbc2050d"; sha256 = "13nnq927kpf91iqccr8db9ripy5czjl5jiyivizn6bia0bam2pvx"; }; - disabledForGRafter = "3.8"; + disabled = gnuradioAtLeast "3.8"; nativeBuildInputs = [ cmake diff --git a/pkgs/development/gnuradio-modules/limesdr/default.nix b/pkgs/development/gnuradio-modules/limesdr/default.nix index a9ed621cdf118..bdd541f04432f 100644 --- a/pkgs/development/gnuradio-modules/limesdr/default.nix +++ b/pkgs/development/gnuradio-modules/limesdr/default.nix @@ -14,6 +14,7 @@ , gmp , icu , limesuite +, gnuradioAtLeast }: let @@ -33,7 +34,7 @@ let in mkDerivation { pname = "gr-limesdr"; inherit version src; - disabledForGRafter = "3.9"; + disabled = gnuradioAtLeast "3.9"; nativeBuildInputs = [ cmake diff --git a/pkgs/development/gnuradio-modules/mkDerivation.nix b/pkgs/development/gnuradio-modules/mkDerivation.nix index 014968f82cc66..11ac506260ad0 100644 --- a/pkgs/development/gnuradio-modules/mkDerivation.nix +++ b/pkgs/development/gnuradio-modules/mkDerivation.nix @@ -7,12 +7,18 @@ mkDerivation: args: # Check if it's supposed to not get built for the current gnuradio version -if (builtins.hasAttr "disabledForGRafter" args) && -(lib.versionAtLeast unwrapped.versionAttr.major args.disabledForGRafter) then +if (builtins.hasAttr "disabled" args) && args.disabled then let name = args.name or "${args.pname}"; in throw "Package ${name} is incompatible with GNURadio ${unwrapped.versionAttr.major}" else +if builtins.hasAttr "disabledForGRafter" args then +throw '' + `disabledForGRafter` is superseded by `disabled`. + Use `disabled = gnuradioAtLeast "${args.disabledForGRafter}";` instead. +'' +else + let args_ = { enableParallelBuilding = args.enableParallelBuilding or true; diff --git a/pkgs/development/gnuradio-modules/nacl/default.nix b/pkgs/development/gnuradio-modules/nacl/default.nix index 9f9175eae058b..0900ca943b970 100644 --- a/pkgs/development/gnuradio-modules/nacl/default.nix +++ b/pkgs/development/gnuradio-modules/nacl/default.nix @@ -9,6 +9,7 @@ , logLib , python , libsodium +, gnuradioAtLeast }: mkDerivation { @@ -20,7 +21,7 @@ mkDerivation { rev = "15276bb0fcabf5fe4de4e58df3d579b5be0e9765"; sha256 = "018np0qlk61l7mlv3xxx5cj1rax8f1vqrsrch3higsl25yydbv7v"; }; - disabledForGRafter = "3.8"; + disabled = gnuradioAtLeast "3.8"; nativeBuildInputs = [ cmake diff --git a/pkgs/development/gnuradio-modules/osmosdr/default.nix b/pkgs/development/gnuradio-modules/osmosdr/default.nix index 18b8229cebccd..8e46ac561493d 100644 --- a/pkgs/development/gnuradio-modules/osmosdr/default.nix +++ b/pkgs/development/gnuradio-modules/osmosdr/default.nix @@ -22,6 +22,7 @@ , libbladeRF , rtl-sdr , soapysdr-with-plugins +, gnuradioAtLeast }: let @@ -44,7 +45,7 @@ let in mkDerivation { pname = "gr-osmosdr"; inherit version src; - disabledForGRafter = "3.11"; + disabled = gnuradioAtLeast "3.11"; outputs = [ "out" "dev" ]; diff --git a/pkgs/development/gnuradio-modules/rds/default.nix b/pkgs/development/gnuradio-modules/rds/default.nix index 7ffdd206474a9..9a6f2ccbbad4c 100644 --- a/pkgs/development/gnuradio-modules/rds/default.nix +++ b/pkgs/development/gnuradio-modules/rds/default.nix @@ -12,6 +12,7 @@ , boost , gmp , icu +, gnuradioAtLeast }: let @@ -33,7 +34,7 @@ let in mkDerivation { pname = "gr-rds"; inherit version src; - disabledForGRafter = "3.9"; + disabled = gnuradioAtLeast "3.9"; buildInputs = [ logLib diff --git a/pkgs/development/hare-third-party/hare-ev/default.nix b/pkgs/development/hare-third-party/hare-ev/default.nix index 902a56e3e10f9..ecde538823477 100644 --- a/pkgs/development/hare-third-party/hare-ev/default.nix +++ b/pkgs/development/hare-third-party/hare-ev/default.nix @@ -7,13 +7,13 @@ stdenv.mkDerivation { pname = "hare-ev"; - version = "unstable-2023-12-04"; + version = "0-unstable-2024-01-04"; src = fetchFromSourcehut { owner = "~sircmpwn"; repo = "hare-ev"; - rev = "e3c3f7613c602672ac41a3e47c106a5bd27a2378"; - hash = "sha256-TQsR2lXJfkPu53WpJy/K+Jruyfw8mCkEIE9DbFQoS+s="; + rev = "736ab9bb17257ee5eba3bc96f6650fc4a14608ea"; + hash = "sha256-SXExwDZKlW/2XYzmJUhkLWj6NF/znrv3vY9V0mD5iFQ="; }; nativeCheckInputs = [ diff --git a/pkgs/development/hare-third-party/hare-png/default.nix b/pkgs/development/hare-third-party/hare-png/default.nix new file mode 100644 index 0000000000000..1218398f72b7b --- /dev/null +++ b/pkgs/development/hare-third-party/hare-png/default.nix @@ -0,0 +1,32 @@ +{ lib, stdenv, hare, hareThirdParty, fetchFromSourcehut }: + +stdenv.mkDerivation (finalAttrs: { + pname = "hare-png"; + version = "unstable-2023-09-09"; + + src = fetchFromSourcehut { + owner = "~sircmpwn"; + repo = "hare-png"; + rev = "9deb848ae691d784c5cc7949153cfa04c67f90b6"; + hash = "sha256-Q7xylsLVd/sp57kv6WzC7QHGN1xOsm7YEsYCbY/zi1Q="; + }; + + nativeBuildInputs = [ hare ]; + propagatedBuildInputs = [ hareThirdParty.hare-compress ]; + + makeFlags = [ + "PREFIX=${builtins.placeholder "out"}" + "HARECACHE=.harecache" + ]; + + doCheck = true; + + meta = with lib; { + homepage = "https://git.sr.ht/~sircmpwn/hare-png/"; + description = "PNG implementation for Hare"; + license = with licenses; [ mpl20 ]; + maintainers = with maintainers; [ starzation ]; + + inherit (hare.meta) platforms badPlatforms; + }; +}) diff --git a/pkgs/development/hare-third-party/hare-ssh/default.nix b/pkgs/development/hare-third-party/hare-ssh/default.nix new file mode 100644 index 0000000000000..d25669f366430 --- /dev/null +++ b/pkgs/development/hare-third-party/hare-ssh/default.nix @@ -0,0 +1,31 @@ +{ lib, stdenv, hare, hareThirdParty, fetchFromSourcehut }: + +stdenv.mkDerivation (finalAttrs: { + pname = "hare-ssh"; + version = "unstable-2023-11-16"; + + src = fetchFromSourcehut { + owner = "~sircmpwn"; + repo = "hare-ssh"; + rev = "c6a39e37ba4a42721594e0a907fe016f8e2198a8"; + hash = "sha256-I43TLPoImBsvkgV3hDy9dw0pXVt4ezINnxFtEV9P2/M="; + }; + + nativeBuildInputs = [ hare ]; + + makeFlags = [ + "PREFIX=${builtins.placeholder "out"}" + "HARECACHE=.harecache" + ]; + + doCheck = true; + + meta = with lib; { + homepage = "https://git.sr.ht/~sircmpwn/hare-ssh/"; + description = "SSH client & server protocol implementation for Hare"; + license = with licenses; [ mpl20 ]; + maintainers = with maintainers; [ patwid ]; + + inherit (hare.meta) platforms badPlatforms; + }; +}) diff --git a/pkgs/development/hare-third-party/hare-toml/default.nix b/pkgs/development/hare-third-party/hare-toml/default.nix index 98cc670ef941e..39a387605652b 100644 --- a/pkgs/development/hare-third-party/hare-toml/default.nix +++ b/pkgs/development/hare-third-party/hare-toml/default.nix @@ -3,36 +3,20 @@ , scdoc , lib , fetchFromGitea -, fetchpatch , nix-update-script }: stdenv.mkDerivation (finalAttrs: { pname = "hare-toml"; - version = "0.1.0"; + version = "0.1.0-unstable-2023-12-27"; src = fetchFromGitea { domain = "codeberg.org"; owner = "lunacb"; repo = "hare-toml"; - rev = "v${finalAttrs.version}"; - hash = "sha256-JKK5CcDmAW7FH7AzFwgsr9i13eRSXDUokWfZix7f4yY="; + rev = "022d0a8d59e5518029f72724a46e6133b934774c"; + hash = "sha256-DsVcbh1zn8GNKzzb+1o6bfgiVigrxHw/5Xm3uuUhRy0="; }; - patches = [ - # Remove `abort()` calls from never returning expressions. - (fetchpatch { - name = "remove-abort-from-never-returning-expressions.patch"; - url = "https://codeberg.org/lunacb/hare-toml/commit/f26e7cdfdccd2e82c9fce7e9fca8644b825b40f1.patch"; - hash = "sha256-DFbrxiaV4lQlFmMzo5GbMubIQ4hU3lXgsJqoyeFWf2g="; - }) - # Fix make's install target to install the correct files - (fetchpatch { - name = "install-correct-files-with-install-target.patch"; - url = "https://codeberg.org/lunacb/hare-toml/commit/b79021911fe7025a8f5ddd97deb2c4d18c67b25e.patch"; - hash = "sha256-IL+faumX6BmdyePXTzsSGgUlgDBqOXXzShupVAa7jlQ="; - }) - ]; - nativeBuildInputs = [ scdoc hare diff --git a/pkgs/development/haskell-modules/configuration-darwin.nix b/pkgs/development/haskell-modules/configuration-darwin.nix index e306884cf4fdc..e6400e2c46c85 100644 --- a/pkgs/development/haskell-modules/configuration-darwin.nix +++ b/pkgs/development/haskell-modules/configuration-darwin.nix @@ -345,7 +345,7 @@ self: super: ({ }) (disableCabalFlag "fixity-th" super.fourmolu); # https://github.com/NixOS/nixpkgs/issues/149692 - Agda = removeConfigureFlag "-foptimise-heavily" super.Agda; + Agda = disableCabalFlag "optimise-heavily" super.Agda; } // lib.optionalAttrs pkgs.stdenv.isx86_64 { # x86_64-darwin diff --git a/pkgs/development/haskell-modules/configuration-ghc-9.6.x.nix b/pkgs/development/haskell-modules/configuration-ghc-9.6.x.nix index 63029222cde44..3dcf3cf819494 100644 --- a/pkgs/development/haskell-modules/configuration-ghc-9.6.x.nix +++ b/pkgs/development/haskell-modules/configuration-ghc-9.6.x.nix @@ -256,7 +256,9 @@ self: super: { sha256 = "sha256-b7u9GiIAd2xpOrM0MfILHNb6Nt7070lNRIadn2l3DfQ="; })]; }) super.ConfigFile; - +} +# super.ghc is required to break infinite recursion as Nix is strict in the attrNames +// lib.optionalAttrs (pkgs.stdenv.hostPlatform.isAarch64 && lib.versionOlder super.ghc.version "9.6.4") { # The NCG backend for aarch64 generates invalid jumps in some situations, # the workaround on 9.6 is to revert to the LLVM backend (which is used # for these sorts of situations even on 9.2 and 9.4). diff --git a/pkgs/development/haskell-modules/configuration-nix.nix b/pkgs/development/haskell-modules/configuration-nix.nix index 6e63cca2c154c..abfd6ad38a5b5 100644 --- a/pkgs/development/haskell-modules/configuration-nix.nix +++ b/pkgs/development/haskell-modules/configuration-nix.nix @@ -492,9 +492,6 @@ self: super: builtins.intersectAttrs super { # Uses OpenGL in testing caramia = dontCheck super.caramia; - # requires llvm 9 specifically https://github.com/llvm-hs/llvm-hs/#building-from-source - llvm-hs = super.llvm-hs.override { llvm-config = pkgs.llvm_9; }; - # llvm-ffi needs a specific version of LLVM which we hard code here. Since we # can't use pkg-config (LLVM has no official .pc files), we need to pass the # `dev` and `lib` output in, or Cabal will have trouble finding the library. @@ -1117,10 +1114,16 @@ self: super: builtins.intersectAttrs super { preCheck = "export CI=true"; }) super.aeson-typescript; - # Enable extra optimisations which increase build time, but also - # later compiler performance, so we should do this for user's benefit. - # Flag added in Agda 2.6.2 - Agda = appendConfigureFlag "-foptimise-heavily" super.Agda; + Agda = lib.pipe super.Agda [ + # Enable extra optimisations which increase build time, but also + # later compiler performance, so we should do this for user's benefit. + # Flag added in Agda 2.6.2 + (enableCabalFlag "optimise-heavily") + # Enable debug printing, which worsens performance slightly but is + # very useful. + # Flag added in Agda 2.6.4.1, was always enabled before + (enableCabalFlag "debug") + ]; # ats-format uses cli-setup in Setup.hs which is quite happy to write # to arbitrary files in $HOME. This doesn't either not achieve anything diff --git a/pkgs/development/interpreters/babashka/clojure-tools.nix b/pkgs/development/interpreters/babashka/clojure-tools.nix index 732b3631583b2..afd170a419386 100644 --- a/pkgs/development/interpreters/babashka/clojure-tools.nix +++ b/pkgs/development/interpreters/babashka/clojure-tools.nix @@ -6,10 +6,10 @@ }: clojure.overrideAttrs (previousAttrs: { pname = "babashka-clojure-tools"; - version = "1.11.1.1413"; + version = "1.11.1.1435"; src = fetchurl { url = previousAttrs.src.url; - hash = "sha256-k8Olo63KUcWFgGNBmr9myD2/JOoV4f2S95v35mI4H+A="; + hash = "sha256-RS/FebIED8RYYXRXBKXZPRROO0HqyDo0zhb+p4Q5m8A="; }; }) diff --git a/pkgs/development/interpreters/babashka/default.nix b/pkgs/development/interpreters/babashka/default.nix index c56ca1ed252c3..99528c2d76399 100644 --- a/pkgs/development/interpreters/babashka/default.nix +++ b/pkgs/development/interpreters/babashka/default.nix @@ -9,11 +9,11 @@ let babashka-unwrapped = buildGraalvmNativeImage rec { pname = "babashka-unwrapped"; - version = "1.3.186"; + version = "1.3.188"; src = fetchurl { url = "https://github.com/babashka/babashka/releases/download/v${version}/babashka-${version}-standalone.jar"; - sha256 = "sha256-T7inTJHSnUySituU0fcgZ0xWjIY3yb8BlSakqym67ew="; + sha256 = "sha256-EjsSUPWiLQcCos2oyVXt3VzLlGEfiXK5CqJZ1NMvF/E="; }; graalvmDrv = graalvmCEPackages.graalvm-ce; @@ -36,6 +36,7 @@ let $out/bin/bb '(+ 1 2)' | fgrep '3' $out/bin/bb '(vec (dedupe *input*))' <<< '[1 1 1 1 2]' | fgrep '[1 2]' $out/bin/bb '(prn "bépo à ê")' | fgrep 'bépo à ê' + $out/bin/bb '(:out (babashka.process/sh "echo" "ä"))' | fgrep 'ä' ''; postInstall = '' diff --git a/pkgs/development/interpreters/cel-go/default.nix b/pkgs/development/interpreters/cel-go/default.nix index 821e8da2ee34e..60d0586e094ed 100644 --- a/pkgs/development/interpreters/cel-go/default.nix +++ b/pkgs/development/interpreters/cel-go/default.nix @@ -5,18 +5,18 @@ buildGoModule rec { pname = "cel-go"; - version = "0.18.2"; + version = "0.19.0"; src = fetchFromGitHub { owner = "google"; repo = "cel-go"; rev = "v${version}"; - hash = "sha256-c4MVOHkDaUGlRVYb9YS9BH4ld2zS3SR5efP6amLhTig="; + hash = "sha256-r3xBg+8C3VZ3sHYKMyQoBVGe+puWdRO4q3e9bur9ZoY="; }; modRoot = "repl"; - vendorHash = "sha256-Oj/XUUmuj5scD5WT6zBxnU1hSapDyRBBz75rbIdY4Ho="; + vendorHash = "sha256-7WBom6FS/GX+pM3zv59BZOwmAIokKkZcN3yGbcQb09Q="; subPackages = [ "main" diff --git a/pkgs/development/interpreters/elixir/1.16.nix b/pkgs/development/interpreters/elixir/1.16.nix index 8a320eae7bb2e..2f57e371e28b1 100644 --- a/pkgs/development/interpreters/elixir/1.16.nix +++ b/pkgs/development/interpreters/elixir/1.16.nix @@ -1,7 +1,7 @@ { mkDerivation }: mkDerivation { - version = "1.16.0"; - sha256 = "sha256-nM3TpX18zdjDAFkljsAqwKx/1AQmwDMIQCeL75etTQc="; + version = "1.16.1"; + sha256 = "sha256-rjUt3gCUszCbzGE7BriwH3ptrV81dqNB/d0nVOXrcGI="; # https://hexdocs.pm/elixir/1.16.0/compatibility-and-deprecations.html#compatibility-between-elixir-and-erlang-otp minimumOTPVersion = "24"; escriptPath = "lib/elixir/scripts/generate_app.escript"; diff --git a/pkgs/development/interpreters/expr/default.nix b/pkgs/development/interpreters/expr/default.nix index 2ff0ffd4f6a9c..e81e56da9bf04 100644 --- a/pkgs/development/interpreters/expr/default.nix +++ b/pkgs/development/interpreters/expr/default.nix @@ -5,18 +5,18 @@ buildGoModule rec { pname = "expr"; - version = "1.15.8"; + version = "1.16.0"; src = fetchFromGitHub { owner = "antonmedv"; repo = "expr"; rev = "v${version}"; - hash = "sha256-leZEP6RJv136z/bNc1S74tw+JQ3QD7NCMbo/Wo7q0ek="; + hash = "sha256-GLh4NayAbqGXI0Ekkk3lXCRwpLwGLbJIo7WjDfpKDhI="; }; sourceRoot = "${src.name}/repl"; - vendorHash = "sha256-Rs2tlno0vJo8FSdnnk3cxQCCxdByQD1jRzmePzMMfvs="; + vendorHash = "sha256-42kFO7kXIdqVrp2FQGELZ90OUobOp4zbdo533vresIw="; ldflags = [ "-s" "-w" ]; diff --git a/pkgs/development/interpreters/j/default.nix b/pkgs/development/interpreters/j/default.nix index 2da499352b3eb..97a8064cc60dd 100644 --- a/pkgs/development/interpreters/j/default.nix +++ b/pkgs/development/interpreters/j/default.nix @@ -1,37 +1,34 @@ { lib , stdenv , fetchFromGitHub -, bc -, libedit -, readline -, avxSupport ? stdenv.hostPlatform.avxSupport +, which +, gmp +, avx2Support ? stdenv.hostPlatform.avx2Support }: stdenv.mkDerivation rec { pname = "j"; - version = "904-beta-c"; + version = "9.5.1"; src = fetchFromGitHub { - name = "${pname}-source"; owner = "jsoftware"; repo = "jsource"; - rev = "j${version}"; - hash = "sha256-MzEO/saHEBl1JwVlFC6P2UKm9RZnV7KVrNd9h4cPV/w="; + rev = "${version}"; + hash = "sha256-QRQhE8138+zaGQOdq9xUOrifkVIprzbJWbmMK+WhEOU="; }; - buildInputs = [ - readline - libedit - bc - ]; + nativeBuildInputs = [ which ]; + buildInputs = [ gmp ]; patches = [ ./fix-install-path.patch ]; + enableParallelBuilding = true; + dontConfigure = true; - # emulating build_all.sh configuration variables + # Emulate jplatform64.sh configuration variables jplatform = if stdenv.isDarwin then "darwin" else if stdenv.hostPlatform.isAarch then "raspberry" @@ -41,62 +38,39 @@ stdenv.mkDerivation rec { j64x = if stdenv.is32bit then "j32" else if stdenv.isx86_64 then - if (stdenv.isLinux && avxSupport) then "j64avx" else "j64" + if stdenv.isLinux && avx2Support then "j64avx2" else "j64" else if stdenv.isAarch64 then if stdenv.isDarwin then "j64arm" else "j64" else "unsupported"; + env.NIX_LDFLAGS = "-lgmp"; + buildPhase = '' runHook preBuild - - export SRCDIR=$(pwd) - export HOME=$TMPDIR - export JLIB=$SRCDIR/jlibrary - export CC=cc - - cd make2 - - patchShebangs . - - j64x="${j64x}" jplatform="${jplatform}" ./build_all.sh - - cp -v $SRCDIR/bin/${jplatform}/${j64x}/* "$JLIB/bin" - + MAKEFLAGS+=" ''${enableParallelBuilding:+-j$NIX_BUILD_CORES}" \ + jplatform=${jplatform} j64x=${j64x} make2/build_all.sh + cp -v bin/${jplatform}/${j64x}/* jlibrary/bin/ runHook postBuild ''; - doCheck = true; - - checkPhase = '' - runHook preCheck - - echo "Smoke test" - echo 'i. 10' | $JLIB/bin/jconsole | fgrep "0 1 2 3 4 5 6 7 8 9" - - # Now run the real tests - pushd $SRCDIR/test - for f in *.ijs - do - echo -n "test $f: " - $JLIB/bin/jconsole < $f > /dev/null || echo FAIL && echo PASS - done - popd - - runHook postCheck - ''; - installPhase = '' runHook preInstall + mkdir -p $out/share/j + cp -r jlibrary/{addons,system} $out/share/j/ + cp -r jlibrary/bin $out/ + runHook postInstall + ''; - mkdir -p "$out/share/j/" - cp -r $JLIB/{addons,system} "$out/share/j" - cp -r $JLIB/bin "$out" + doInstallCheck = false; # The "gregex" test fails due to not finding PCRE2 - runHook postInstall + installCheckPhase = '' + runHook preInstallCheck + HOME="$TMPDIR" $out/bin/jconsole -lib $out/bin/libj* script/testga.ijs + runHook postInstallCheck ''; meta = with lib; { - homepage = "http://jsoftware.com/"; + homepage = "https://jsoftware.com/"; description = "J programming language, an ASCII-based APL successor"; longDescription = '' J is a high-level, general-purpose programming language that is @@ -104,8 +78,10 @@ stdenv.mkDerivation rec { of data. It is a powerful tool for developing algorithms and exploring problems that are not already well understood. ''; - license = licenses.gpl3Plus; + license = licenses.gpl3Only; maintainers = with maintainers; [ raskin synthetica AndersonTorres ]; - platforms = with platforms; unix; + broken = stdenv.isDarwin; + platforms = platforms.all; + mainProgram = "jconsole"; }; } diff --git a/pkgs/development/interpreters/janet/default.nix b/pkgs/development/interpreters/janet/default.nix index f186021eb3d64..8fd424ce153b9 100644 --- a/pkgs/development/interpreters/janet/default.nix +++ b/pkgs/development/interpreters/janet/default.nix @@ -9,13 +9,13 @@ stdenv.mkDerivation (finalAttrs: { pname = "janet"; - version = "1.32.1"; + version = "1.33.0"; src = fetchFromGitHub { owner = "janet-lang"; repo = "janet"; rev = "v${finalAttrs.version}"; - hash = "sha256-24d9N59pTfQATWmAZN4dAFT8RTTlUlBPKokcQ/Fd2No="; + hash = "sha256-kXbJtWxvysC4hLkgVyPpkunFhN+2iVu+S+LCo5ikj5s="; }; postPatch = '' diff --git a/pkgs/development/interpreters/lfe/2.1.nix b/pkgs/development/interpreters/lfe/2.1.nix index 2dff2ade66c1a..f239aa94b78ff 100644 --- a/pkgs/development/interpreters/lfe/2.1.nix +++ b/pkgs/development/interpreters/lfe/2.1.nix @@ -1,7 +1,7 @@ { fetchpatch, mkDerivation }: mkDerivation { - version = "2.1.1"; - sha256 = "sha256-HUOVBzUaU0ixIfPPctwR2TPijxJjcFY3dJ8Z7Ot2bpE="; - maximumOTPVersion = "25"; + version = "2.1.3"; + hash = "sha256-HUOVBzUaU0ixIfPPctwR2TPijxJjcFY3dJ8Z7Ot2bpE="; + maximumOTPVersion = "26"; } diff --git a/pkgs/development/interpreters/lfe/generic-builder.nix b/pkgs/development/interpreters/lfe/generic-builder.nix index 5e6016d4e97e7..1589121d998d9 100644 --- a/pkgs/development/interpreters/lfe/generic-builder.nix +++ b/pkgs/development/interpreters/lfe/generic-builder.nix @@ -3,9 +3,10 @@ { baseName ? "lfe" , version , maximumOTPVersion -, sha256 ? null +, sha256 ? "" +, hash ? "" , rev ? version -, src ? fetchFromGitHub { inherit rev sha256; owner = "rvirding"; repo = "lfe"; } +, src ? fetchFromGitHub { inherit hash rev sha256; owner = "lfe"; repo = "lfe"; } , patches ? [] }: diff --git a/pkgs/development/interpreters/luau/default.nix b/pkgs/development/interpreters/luau/default.nix index 949ad6c3d45fc..1457c065a9712 100644 --- a/pkgs/development/interpreters/luau/default.nix +++ b/pkgs/development/interpreters/luau/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "luau"; - version = "0.607"; + version = "0.611"; src = fetchFromGitHub { owner = "luau-lang"; repo = "luau"; rev = version; - hash = "sha256-2O+nOgOWXPEbBJlRYnW8PlpG2oeQNZB7k08lFgF+ceE="; + hash = "sha256-gtY/dv+9+1OcxPaU/r01vgMDyfxdB36wgQ7WEGKW17c="; }; nativeBuildInputs = [ cmake ]; @@ -42,5 +42,6 @@ stdenv.mkDerivation rec { license = licenses.mit; platforms = platforms.all; maintainers = [ maintainers.marsam ]; + mainProgram = "luau"; }; } diff --git a/pkgs/development/interpreters/lune/default.nix b/pkgs/development/interpreters/lune/default.nix index cb6f532e2bc96..6622c572692af 100644 --- a/pkgs/development/interpreters/lune/default.nix +++ b/pkgs/development/interpreters/lune/default.nix @@ -6,30 +6,39 @@ , darwin }: +let + inherit (darwin.apple_sdk.frameworks) Security SystemConfiguration; +in rustPlatform.buildRustPackage rec { pname = "lune"; - version = "0.7.11"; + version = "0.8.0"; src = fetchFromGitHub { owner = "filiptibell"; repo = "lune"; rev = "v${version}"; - hash = "sha256-5agoAXeO16/CihsgvUHt+pgA+/ph6PualTY6xqDQbeU="; + hash = "sha256-ZVETw+GdkrR2V8RrHAWBR+avAuN0158DlJkYBquju8E="; fetchSubmodules = true; }; - cargoHash = "sha256-kPBPxlsicoFDyOsuJWhvQHDC2uwYQqpd7S+kQPRd8DY="; + cargoHash = "sha256-zOjDT8Sn/p3YaG+dWyYxSWUOo11p9/WG3EyNagZRtQQ="; nativeBuildInputs = [ pkg-config ]; buildInputs = lib.optionals stdenv.isDarwin [ - darwin.apple_sdk.frameworks.Security + Security + SystemConfiguration ]; + # error: linker `aarch64-linux-gnu-gcc` not found + postPatch = '' + rm .cargo/config.toml + ''; + checkFlags = [ - # these all require internet access + # require internet access "--skip=tests::net_request_codes" "--skip=tests::net_request_compression" "--skip=tests::net_request_methods" @@ -40,15 +49,17 @@ rustPlatform.buildRustPackage rec { "--skip=tests::roblox_instance_custom_async" "--skip=tests::serde_json_decode" - # this tries to use the root directory as the CWD + # uses root as the CWD "--skip=tests::process_spawn_cwd" ]; meta = with lib; { description = "A standalone Luau script runtime"; - homepage = "https://github.com/filiptibell/lune"; - changelog = "https://github.com/filiptibell/lune/blob/${src.rev}/CHANGELOG.md"; + homepage = "https://github.com/lune-org/lune"; + changelog = "https://github.com/lune-org/lune/blob/${src.rev}/CHANGELOG.md"; license = licenses.mpl20; maintainers = with maintainers; [ lammermann ]; + # note: Undefined symbols for architecture x86_64 + broken = stdenv.isDarwin; }; } diff --git a/pkgs/development/interpreters/nelua/default.nix b/pkgs/development/interpreters/nelua/default.nix index 1c0d4c647f546..00b0422783a41 100644 --- a/pkgs/development/interpreters/nelua/default.nix +++ b/pkgs/development/interpreters/nelua/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "nelua"; - version = "unstable-2024-01-02"; + version = "unstable-2024-02-03"; src = fetchFromGitHub { owner = "edubart"; repo = "nelua-lang"; - rev = "4d4b2b187675522a3cf4584ef734a9f8df201159"; - hash = "sha256-0ct4DG7ws16PrjmYfcAsr08zIO9cpb1Vtbm2OxcQcfY="; + rev = "05a2633a18dfdde7389394b9289da582c10e79bc"; + hash = "sha256-oRW+pCB10T0A6fEPP3S+8iurQ2J5WMpQlCYScfIk07c="; }; postPatch = '' diff --git a/pkgs/development/interpreters/nextflow/default.nix b/pkgs/development/interpreters/nextflow/default.nix index e4885f985abaa..ef0d4c42160a5 100644 --- a/pkgs/development/interpreters/nextflow/default.nix +++ b/pkgs/development/interpreters/nextflow/default.nix @@ -61,7 +61,7 @@ stdenv.mkDerivation rec { homepage = "https://www.nextflow.io/"; changelog = "https://github.com/nextflow-io/nextflow/releases"; license = licenses.asl20; - maintainers = [ maintainers.Etjean ]; + maintainers = with maintainers; [ Etjean edmundmiller ]; mainProgram = "nextflow"; platforms = platforms.unix; }; diff --git a/pkgs/development/interpreters/php/8.1.nix b/pkgs/development/interpreters/php/8.1.nix index 3082f8b85b62a..ff76b64d71cf3 100644 --- a/pkgs/development/interpreters/php/8.1.nix +++ b/pkgs/development/interpreters/php/8.1.nix @@ -1,9 +1,17 @@ -{ callPackage, ... }@_args: +{ callPackage, fetchpatch, ... }@_args: let - base = callPackage ./generic.nix (_args // { + base = callPackage ./generic.nix ((removeAttrs _args [ "fetchpatch" ]) // { version = "8.1.27"; hash = "sha256-oV/XPqRPLfMLB9JHhuB9GUiw6j7tC4uEVzXVANwov/E="; + extraPatches = [ + # Fix build with libxml 2.12+. + # Patch from https://github.com/php/php-src/commit/0a39890c967aa57225bb6bdf4821aff7a3a3c082 + (fetchpatch { + url = "https://github.com/php/php-src/commit/0a39890c967aa57225bb6bdf4821aff7a3a3c082.patch"; + hash = "sha256-HvpTL7aXO9gr4glFdhqUWQPrG8TYTlvbNINq33M3zS0="; + }) + ]; }); in base.withExtensions ({ all, ... }: with all; ([ diff --git a/pkgs/development/interpreters/php/8.2.nix b/pkgs/development/interpreters/php/8.2.nix index b934647d9b8c4..2d2a705c30e57 100644 --- a/pkgs/development/interpreters/php/8.2.nix +++ b/pkgs/development/interpreters/php/8.2.nix @@ -2,8 +2,8 @@ let base = callPackage ./generic.nix (_args // { - version = "8.2.14"; - hash = "sha256-+HHhMTM9YK5sU3sa3dvCrqVMQ2xWKvmG+4MJwGAEC54="; + version = "8.2.15"; + hash = "sha256-UMPiILeqY6hXFiM8kC60TMCkZn7QuDNXIq4jkbE1Xno="; }); in base.withExtensions ({ all, ... }: with all; ([ diff --git a/pkgs/development/interpreters/php/8.3.nix b/pkgs/development/interpreters/php/8.3.nix index 942507d7d355f..877bde775262a 100644 --- a/pkgs/development/interpreters/php/8.3.nix +++ b/pkgs/development/interpreters/php/8.3.nix @@ -2,8 +2,8 @@ let base = callPackage ./generic.nix (_args // { - version = "8.3.1"; - hash = "sha256-xA+ukZf6aKUy9qBiwxba/jsExUUTa1S56tSTL8JsauE="; + version = "8.3.2"; + hash = "sha256-WCs8g3qNlS7//idKXklwbEOojBYoMMKow1gIn+dEkoQ="; }); in base.withExtensions ({ all, ... }: with all; ([ diff --git a/pkgs/development/interpreters/python/default.nix b/pkgs/development/interpreters/python/default.nix index 2674971670fe6..7f60ba036c5ff 100644 --- a/pkgs/development/interpreters/python/default.nix +++ b/pkgs/development/interpreters/python/default.nix @@ -109,9 +109,9 @@ in { major = "3"; minor = "13"; patch = "0"; - suffix = "a2"; + suffix = "a3"; }; - hash = "sha256-ttRrRBkMTAJCHraaBC0WsMVUgb3agYxsQW3CRBE6nC0="; + hash = "sha256-IHhMgwTrHGnID5ZuvfB3W+LjfiPfO2JGHuwSqF3Pfq0="; inherit (darwin) configd; inherit passthruFun; }; diff --git a/pkgs/development/interpreters/python/python-packages-base.nix b/pkgs/development/interpreters/python/python-packages-base.nix index 2126b796ca9de..e2bd6cd5a5ab6 100644 --- a/pkgs/development/interpreters/python/python-packages-base.nix +++ b/pkgs/development/interpreters/python/python-packages-base.nix @@ -98,8 +98,4 @@ in { python = toPythonModule python; # Dont take pythonPackages from "global" pkgs scope to avoid mixing python versions pythonPackages = self; - - # Remove? - recursivePthLoader = toPythonModule (callPackage ../../../development/python-modules/recursive-pth-loader { }); - } diff --git a/pkgs/development/interpreters/rakudo/moarvm.nix b/pkgs/development/interpreters/rakudo/moarvm.nix index d914b7a1fac22..dbe678079f023 100644 --- a/pkgs/development/interpreters/rakudo/moarvm.nix +++ b/pkgs/development/interpreters/rakudo/moarvm.nix @@ -1,7 +1,6 @@ { lib , stdenv , fetchFromGitHub -, cctools-port , perl , CoreServices , ApplicationServices @@ -9,13 +8,13 @@ stdenv.mkDerivation rec { pname = "moarvm"; - version = "2023.10"; + version = "2024.01"; src = fetchFromGitHub { owner = "moarvm"; repo = "moarvm"; rev = version; - hash = "sha256-1w6oMoxDro/AHE+QvjKUx9cxNpYuVSXYrRMh31ksgoQ="; + hash = "sha256-vU1fhR6pKz2qnznrJ/mknt9DVx+I1kLaPStXKQvp59g="; fetchSubmodules = true; }; @@ -27,13 +26,9 @@ stdenv.mkDerivation rec { --replace '/usr/bin/arch' "$(type -P true)" \ --replace '/usr/' '/nope/' substituteInPlace 3rdparty/dyncall/configure \ - --replace '`sw_vers -productVersion`' '"$MACOSX_DEPLOYMENT_TARGET"' + --replace '`sw_vers -productVersion`' '"11.0"' ''; - nativeBuildInputs = lib.optionals (stdenv.isDarwin && stdenv.isx86_64) [ - cctools-port - ]; - buildInputs = [ perl ] ++ lib.optionals stdenv.isDarwin [ CoreServices ApplicationServices ]; doCheck = false; # MoarVM does not come with its own test suite diff --git a/pkgs/development/interpreters/risor/default.nix b/pkgs/development/interpreters/risor/default.nix index 1408b196f4a37..22bbe5b9c73bf 100644 --- a/pkgs/development/interpreters/risor/default.nix +++ b/pkgs/development/interpreters/risor/default.nix @@ -1,23 +1,23 @@ { lib -, buildGo121Module +, buildGoModule , fetchFromGitHub , testers , risor }: -buildGo121Module rec { +buildGoModule rec { pname = "risor"; - version = "1.1.2"; + version = "1.3.2"; src = fetchFromGitHub { owner = "risor-io"; repo = "risor"; rev = "v${version}"; - hash = "sha256-7/pGC2+7KKc+1JZrPnchG3/Zj15lfcvTppuFUcpu/aU="; + hash = "sha256-E4Huto3jvPziWEZqHwVBchZYDX/Tuq/TCBvoviin5UY="; }; proxyVendor = true; - vendorHash = "sha256-6Zb30IXZsRQ0mvJOf4yDPkk7I+s18ok/V90mSKB/Ev4="; + vendorHash = "sha256-0NYvZhVkDX6WlKN4QFXyrNnEy0sjUQ1Us+iNEPIgNX0="; subPackages = [ "cmd/risor" diff --git a/pkgs/development/interpreters/ruby/default.nix b/pkgs/development/interpreters/ruby/default.nix index 9fe47eda13b17..781b3273e3a9e 100644 --- a/pkgs/development/interpreters/ruby/default.nix +++ b/pkgs/development/interpreters/ruby/default.nix @@ -300,8 +300,8 @@ in { }; ruby_3_2 = generic { - version = rubyVersion "3" "2" "2" ""; - hash = "sha256-lsV1WIcaZ0jeW8nydOk/S1qtBs2PN776Do2U57ikI7w="; + version = rubyVersion "3" "2" "3" ""; + hash = "sha256-r38XV9ndtjA0WYgTkhHx/VcP9bqDDe8cx8Rorptlybo="; cargoHash = "sha256-6du7RJo0DH+eYMOoh3L31F3aqfR5+iG1iKauSV1uNcQ="; }; diff --git a/pkgs/development/interpreters/ruby/rubygems/default.nix b/pkgs/development/interpreters/ruby/rubygems/default.nix index 95a6fb077eb12..dd89e0cd41d79 100644 --- a/pkgs/development/interpreters/ruby/rubygems/default.nix +++ b/pkgs/development/interpreters/ruby/rubygems/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "rubygems"; - version = "3.5.3"; + version = "3.5.5"; src = fetchurl { url = "https://rubygems.org/rubygems/rubygems-${version}.tgz"; - hash = "sha256-8xFe6AgJkvJXwBYbgR4HsBLyAXXtiTSfsayYl33cXJw="; + hash = "sha256-ErKsKMIEvs4oA8eS9v1ASfqlMOJOxeTVfCA99AIcTh0="; }; patches = [ diff --git a/pkgs/development/interpreters/spidermonkey/common.nix b/pkgs/development/interpreters/spidermonkey/common.nix index ff9bb39e0a294..46af4ec26bbe5 100644 --- a/pkgs/development/interpreters/spidermonkey/common.nix +++ b/pkgs/development/interpreters/spidermonkey/common.nix @@ -125,7 +125,6 @@ stdenv.mkDerivation (finalAttrs: rec { "--disable-jemalloc" "--disable-strip" "--disable-tests" - ] ++ lib.optionals (stdenv.hostPlatform != stdenv.buildPlatform) [ # Spidermonkey seems to use different host/build terminology for cross # compilation here. "--host=${stdenv.buildPlatform.config}" diff --git a/pkgs/development/interpreters/starlark-rust/default.nix b/pkgs/development/interpreters/starlark-rust/default.nix index bd30fb4f85ae6..fdffaa549aa8f 100644 --- a/pkgs/development/interpreters/starlark-rust/default.nix +++ b/pkgs/development/interpreters/starlark-rust/default.nix @@ -5,15 +5,15 @@ rustPlatform.buildRustPackage rec { pname = "starlark-rust"; - version = "0.10.0"; + version = "0.11.0"; src = fetchCrate { pname = "starlark_bin"; inherit version; - hash = "sha256-7AoNRTLyTYsUass9bMJMBUN+GrfUzEGM9cED5VsRESs="; + hash = "sha256-/dy9uzXLZipKzFaslOmlzeEsOD89pprwFTopYpsmHGM="; }; - cargoHash = "sha256-Q00JJRiubrxnI0nFQqUTbxTTB70XV93HJycjdlvV+74="; + cargoHash = "sha256-Ict1Lh+JPZ5dmC+ul0phcQug9nYeaILLCtaHQOI6qBk="; meta = with lib; { description = "A Rust implementation of the Starlark language"; diff --git a/pkgs/development/interpreters/starlark/default.nix b/pkgs/development/interpreters/starlark/default.nix deleted file mode 100644 index a387765f833d6..0000000000000 --- a/pkgs/development/interpreters/starlark/default.nix +++ /dev/null @@ -1,23 +0,0 @@ -{ lib, fetchFromGitHub, buildGoModule }: -buildGoModule rec { - pname = "starlark"; - version = "unstable-2023-11-01"; - - src = fetchFromGitHub { - owner = "google"; - repo = "starlark-go"; - rev = "556fd59b42f68a2fb1f84957741b72811c714e51"; - hash = "sha256-0IiEtZOQEvE2Qm//lI1eyFFL1q/ZQzO9JzmiGsk0HkQ="; - }; - - vendorHash = "sha256-jQE5fSqJeiDV7PW7BY/dzCxG6b/KEVIobcjJsaL2zMw="; - - ldflags = [ "-s" "-w" ]; - - meta = with lib; { - homepage = "https://github.com/google/starlark-go"; - description = "An interpreter for Starlark, implemented in Go"; - license = licenses.bsd3; - maintainers = with maintainers; [ aaronjheng ]; - }; -} diff --git a/pkgs/development/interpreters/wamr/default.nix b/pkgs/development/interpreters/wamr/default.nix index f7761d5037f9d..d1d0796f5e97a 100644 --- a/pkgs/development/interpreters/wamr/default.nix +++ b/pkgs/development/interpreters/wamr/default.nix @@ -6,17 +6,21 @@ stdenv.mkDerivation (finalAttrs: { pname = "wamr"; - version = "1.3.0"; + version = "1.3.2"; src = fetchFromGitHub { owner = "bytecodealliance"; repo = "wasm-micro-runtime"; rev = "WAMR-${finalAttrs.version}"; - hash = "sha256-h+IwCdufimmkVk2XUAFtDcV+5dJWohRc1kmh3zgDKIg="; + hash = "sha256-4iH1PC0fEPehlez8YWgqPBxWnePFcMBzbGfd2CQjvd4="; }; nativeBuildInputs = [ cmake ]; + cmakeFlags = lib.optionals stdenv.isDarwin [ + "-DCMAKE_OSX_DEPLOYMENT_TARGET=${stdenv.targetPlatform.darwinSdkVersion}" + ]; + sourceRoot = let platform = if stdenv.isLinux then "linux" diff --git a/pkgs/development/interpreters/wasmtime/default.nix b/pkgs/development/interpreters/wasmtime/default.nix index 47790df5ec3fd..3d97167d64dc4 100644 --- a/pkgs/development/interpreters/wasmtime/default.nix +++ b/pkgs/development/interpreters/wasmtime/default.nix @@ -2,19 +2,19 @@ rustPlatform.buildRustPackage rec { pname = "wasmtime"; - version = "16.0.0"; + version = "17.0.0"; src = fetchFromGitHub { owner = "bytecodealliance"; repo = pname; rev = "v${version}"; - hash = "sha256-kySJme79RQMI8PP2Jhx1mjqJpUIf5jPn2TvbPEzw5hY="; + hash = "sha256-HGs82LMDJJZl1bPaFsVetpMR7ytBgGmOkH1tt7xmUMA="; fetchSubmodules = true; }; # Disable cargo-auditable until https://github.com/rust-secure-code/cargo-auditable/issues/124 is solved. auditable = false; - cargoHash = "sha256-2XlnR4OBvdQyMUUOL6VvqDxf8jGYlhz2PDuPd24Ocxw="; + cargoHash = "sha256-bNGpBgAhLN4s90saQqIgFb6hXtfC9NIjOfy+hvkRJ6E="; cargoBuildFlags = [ "--package" "wasmtime-cli" "--package" "wasmtime-c-api" ]; outputs = [ "out" "dev" ]; diff --git a/pkgs/development/libraries/CoinMP/default.nix b/pkgs/development/libraries/CoinMP/default.nix index 25b9ba0fb5746..0a2954f4a7dd4 100644 --- a/pkgs/development/libraries/CoinMP/default.nix +++ b/pkgs/development/libraries/CoinMP/default.nix @@ -11,6 +11,10 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; + env = lib.optionalAttrs stdenv.cc.isClang { + CXXFLAGS = "-std=c++14"; + }; + hardeningDisable = [ "format" ]; meta = with lib; { diff --git a/pkgs/development/libraries/SDL2_image/default.nix b/pkgs/development/libraries/SDL2_image/default.nix index a472083c2569b..03b3f146ca939 100644 --- a/pkgs/development/libraries/SDL2_image/default.nix +++ b/pkgs/development/libraries/SDL2_image/default.nix @@ -1,20 +1,15 @@ { lib, stdenv, fetchurl , pkg-config , SDL2, libpng, libjpeg, libtiff, giflib, libwebp, libXpm, zlib, Foundation -, version ? "2.8.2" -, hash ? "sha256-j0hrv7z4Rk3VjJ5dkzlKsCVc5otRxalmqRgkSCCnbdw=" }: -let +stdenv.mkDerivation (finalAttrs: { pname = "SDL2_image"; -in - -stdenv.mkDerivation { - inherit pname version; + version = "2.8.2"; src = fetchurl { - url = "https://www.libsdl.org/projects/SDL_image/release/${pname}-${version}.tar.gz"; - inherit hash; + url = "https://www.libsdl.org/projects/SDL_image/release/SDL2_image-${finalAttrs.version}.tar.gz"; + hash = "sha256-j0hrv7z4Rk3VjJ5dkzlKsCVc5otRxalmqRgkSCCnbdw="; }; nativeBuildInputs = [ pkg-config ]; @@ -44,4 +39,4 @@ stdenv.mkDerivation { license = licenses.zlib; maintainers = with maintainers; [ cpages ]; }; -} +}) diff --git a/pkgs/development/libraries/StormLib/default.nix b/pkgs/development/libraries/StormLib/default.nix deleted file mode 100644 index bc247e956235c..0000000000000 --- a/pkgs/development/libraries/StormLib/default.nix +++ /dev/null @@ -1,35 +0,0 @@ -{ lib, stdenv, fetchFromGitHub, cmake, bzip2, libtomcrypt, zlib, darwin }: - -stdenv.mkDerivation rec { - pname = "StormLib"; - version = "9.22"; - - src = fetchFromGitHub { - owner = "ladislav-zezula"; - repo = "StormLib"; - rev = "v${version}"; - sha256 = "1rcdl6ryrr8fss5z5qlpl4prrw8xpbcdgajg2hpp0i7fpk21ymcc"; - }; - - postPatch = '' - substituteInPlace CMakeLists.txt \ - --replace "FRAMEWORK DESTINATION /Library/Frameworks" "FRAMEWORK DESTINATION Library/Frameworks" - ''; - - cmakeFlags = [ - "-DBUILD_SHARED_LIBS=ON" - "-DWITH_LIBTOMCRYPT=ON" - ]; - - nativeBuildInputs = [ cmake ]; - buildInputs = [ bzip2 libtomcrypt zlib ] ++ - lib.optionals stdenv.isDarwin [ darwin.apple_sdk.frameworks.Carbon ]; - - meta = with lib; { - homepage = "https://github.com/ladislav-zezula/StormLib"; - license = licenses.mit; - description = "An open-source project that can work with Blizzard MPQ archives"; - platforms = platforms.all; - maintainers = with maintainers; [ aanderse karolchmist ]; - }; -} diff --git a/pkgs/development/libraries/abseil-cpp/202401.nix b/pkgs/development/libraries/abseil-cpp/202401.nix new file mode 100644 index 0000000000000..f540a7f8260ae --- /dev/null +++ b/pkgs/development/libraries/abseil-cpp/202401.nix @@ -0,0 +1,42 @@ +{ lib +, stdenv +, fetchFromGitHub +, cmake +, gtest +, static ? stdenv.hostPlatform.isStatic +, cxxStandard ? null +}: + +stdenv.mkDerivation (finalAttrs: { + pname = "abseil-cpp"; + version = "20240116.0"; + + src = fetchFromGitHub { + owner = "abseil"; + repo = "abseil-cpp"; + rev = "refs/tags/${finalAttrs.version}"; + hash = "sha256-HtJh2oYGx87bNT6Ll3WLeYPPxH1f9JwVqCXGErykGnE="; + }; + + cmakeFlags = [ + "-DABSL_BUILD_TEST_HELPERS=ON" + "-DABSL_USE_EXTERNAL_GOOGLETEST=ON" + "-DBUILD_SHARED_LIBS=${if static then "OFF" else "ON"}" + ] ++ lib.optionals (cxxStandard != null) [ + "-DCMAKE_CXX_STANDARD=${cxxStandard}" + ]; + + strictDeps = true; + + nativeBuildInputs = [ cmake ]; + + buildInputs = [ gtest ]; + + meta = with lib; { + description = "An open-source collection of C++ code designed to augment the C++ standard library"; + homepage = "https://abseil.io/"; + license = licenses.asl20; + platforms = platforms.all; + maintainers = [ maintainers.GaetanLepage ]; + }; +}) diff --git a/pkgs/development/libraries/ada/spark2014/default.nix b/pkgs/development/libraries/ada/spark2014/default.nix index b89a56a397b99..a52a5ac63f710 100644 --- a/pkgs/development/libraries/ada/spark2014/default.nix +++ b/pkgs/development/libraries/ada/spark2014/default.nix @@ -5,7 +5,6 @@ , gnatcoll-core , gprbuild , python3 -, ocaml , ocamlPackages , makeWrapper }: @@ -27,7 +26,7 @@ stdenv.mkDerivation rec { gnat12 gprbuild python3 - ocaml + ocamlPackages.ocaml makeWrapper ]; diff --git a/pkgs/development/libraries/aemu/default.nix b/pkgs/development/libraries/aemu/default.nix index 3ee8e5eca6f15..e2ea8e5b1cd55 100644 --- a/pkgs/development/libraries/aemu/default.nix +++ b/pkgs/development/libraries/aemu/default.nix @@ -28,6 +28,7 @@ stdenv.mkDerivation { # The BSD license comes from host-common/VpxFrameParser.cpp, which # incorporates some code from libvpx, which uses the 3-clause BSD license. license = with licenses; [ asl20 mit bsd3 ]; - platforms = platforms.darwin ++ platforms.linux; + # See base/include/aemu/base/synchronization/Lock.h + platforms = [ "x86_64-linux" "aarch64-linux" "x86_64-darwin" "aarch64-darwin" ]; }; } diff --git a/pkgs/development/libraries/agda/1lab/default.nix b/pkgs/development/libraries/agda/1lab/default.nix index c158449aed16b..89b0fb60c3652 100644 --- a/pkgs/development/libraries/agda/1lab/default.nix +++ b/pkgs/development/libraries/agda/1lab/default.nix @@ -11,9 +11,13 @@ mkDerivation rec { hash = "sha256-0U6s6sXdynk2IWRBDXBJCf7Gc+gE8AhR1PXZl0DS4yU="; }; - # We don't need anything in support; avoid installing LICENSE.agda postPatch = '' + # We don't need anything in support; avoid installing LICENSE.agda rm -rf support + + # Remove verbosity options as they make Agda take longer and use more memory. + shopt -s globstar extglob + sed -Ei '/OPTIONS/s/ -v ?[^ #]+//g' src/**/*.@(agda|lagda.md) ''; libraryName = "1lab"; diff --git a/pkgs/development/libraries/alembic/default.nix b/pkgs/development/libraries/alembic/default.nix index afd0ad458bf75..6f73c47f49d1a 100644 --- a/pkgs/development/libraries/alembic/default.nix +++ b/pkgs/development/libraries/alembic/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, cmake, openexr, hdf5-threadsafe, ilmbase }: +{ lib, stdenv, fetchFromGitHub, cmake, openexr, hdf5-threadsafe }: stdenv.mkDerivation rec { @@ -20,13 +20,7 @@ stdenv.mkDerivation rec nativeBuildInputs = [ cmake ]; - # NOTE: Alembic also support imath instead of ilmbase, but some users of Alembic (e.g. Blender) - # are incompatible with the imath version of Alembic - buildInputs = [ openexr hdf5-threadsafe ilmbase ]; - - # Downstream packages trying to use Alembic via CMake need ilmbase as well - # For some reason this won't be picked up correctly otherwise - propagatedBuildInputs = [ ilmbase ]; + buildInputs = [ openexr hdf5-threadsafe ]; # These flags along with the postPatch step ensure that all artifacts end up # in the correct output without needing to move anything diff --git a/pkgs/development/libraries/allegro/5.nix b/pkgs/development/libraries/allegro/5.nix index 3b9bbfeb244aa..eaf227fa60d14 100644 --- a/pkgs/development/libraries/allegro/5.nix +++ b/pkgs/development/libraries/allegro/5.nix @@ -40,13 +40,13 @@ stdenv.mkDerivation rec { pname = "allegro"; - version = "5.2.9.0"; + version = "5.2.9.1"; src = fetchFromGitHub { owner = "liballeg"; repo = "allegro5"; rev = version; - sha256 = "sha256-lGaHhFlc9zcalRFx0Xcyd0pZdC9lln0ez5hdfRz6Kt8="; + sha256 = "sha256-n2OCmZmAqeXjtnCTqJgQ5q4j8/lnPfH+5tpWKIFKle0="; }; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/amf-headers/default.nix b/pkgs/development/libraries/amf-headers/default.nix index b1b93d38cedc0..07a76fcdfb127 100644 --- a/pkgs/development/libraries/amf-headers/default.nix +++ b/pkgs/development/libraries/amf-headers/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "amf-headers"; - version = "1.4.32"; + version = "1.4.33"; src = fetchFromGitHub { owner = "GPUOpen-LibrariesAndSDKs"; repo = "AMF"; rev = "v${version}"; - sha256 = "sha256-3CdC/9o6ur2CeVLImz2QfaZAH2+KtDdxs5zRF7W5/oo="; + sha256 = "sha256-oho1EonWxgBmsQiX3wPhs0jQjLFwLe49C7/SOEptYiw="; }; installPhase = '' diff --git a/pkgs/development/libraries/atkmm/2.36.nix b/pkgs/development/libraries/atkmm/2.36.nix index f034216197332..600ae449fd329 100644 --- a/pkgs/development/libraries/atkmm/2.36.nix +++ b/pkgs/development/libraries/atkmm/2.36.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "atkmm"; - version = "2.36.2"; + version = "2.36.3"; src = fetchurl { url = "mirror://gnome/sources/${pname}/${lib.versions.majorMinor version}/${pname}-${version}.tar.xz"; - sha256 = "sha256-b2LdmfdGmF5XNgWTdXfM/JRDaPYGpxykY0LXDhza4Hk="; + sha256 = "sha256-bsJk6qDE3grbcgLGABcL3pp/vk1Ga/vpQOr3+qpsWXQ="; }; outputs = [ "out" "dev" ]; diff --git a/pkgs/development/libraries/atkmm/default.nix b/pkgs/development/libraries/atkmm/default.nix index d26611f45073e..a22e3fec16a67 100644 --- a/pkgs/development/libraries/atkmm/default.nix +++ b/pkgs/development/libraries/atkmm/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "atkmm"; - version = "2.28.3"; + version = "2.28.4"; src = fetchurl { url = "mirror://gnome/sources/${pname}/${lib.versions.majorMinor version}/${pname}-${version}.tar.xz"; - sha256 = "sha256-fCCItIapCb6NorGDBOVsX5CITRNDyNpzZ+pc0yWLmWk="; + sha256 = "sha256-ChQqgSj4PAAe+4AU7kY+mnZgVO+EaGr5UxNeBNKP2rM="; }; outputs = [ "out" "dev" ]; diff --git a/pkgs/development/libraries/avro-c++/default.nix b/pkgs/development/libraries/avro-c++/default.nix index 8def8041ced98..57070c8f442e9 100644 --- a/pkgs/development/libraries/avro-c++/default.nix +++ b/pkgs/development/libraries/avro-c++/default.nix @@ -1,13 +1,30 @@ -{ lib, stdenv, fetchurl, cmake, boost, python3 }: +{ lib +, stdenv +, fetchurl +, fetchpatch +, cmake +, boost +, python3 +}: stdenv.mkDerivation rec { pname = "avro-c++"; - version = "1.11.0"; + version = "1.11.3"; src = fetchurl { url = "mirror://apache/avro/avro-${version}/cpp/avro-cpp-${version}.tar.gz"; - sha256 = "sha256-73DKihz+7XAX3LLA7VkTdN6rFhuGvmyksxK8JMranFY="; + hash = "sha256-+6JCrvd+yBnQdWH8upN1FyGVbejQyujh8vMAtUszG64="; }; + patches = [ + # This patch fixes boost compatibility and can be removed when + # upgrading beyond 1.11.3 https://github.com/apache/avro/pull/1920 + (fetchpatch { + name = "fix-boost-compatibility.patch"; + url = "https://github.com/apache/avro/commit/016323828f147f185d03f50d2223a2f50bfafce1.patch"; + hash = "sha256-hP/5J2JzSplMvg8EjEk98Vim8DfTyZ4hZ/WGiVwvM1A="; + }) + ]; + patchFlags = [ "-p3" ]; nativeBuildInputs = [ cmake python3 ]; buildInputs = [ boost ]; diff --git a/pkgs/development/libraries/aws-c-auth/default.nix b/pkgs/development/libraries/aws-c-auth/default.nix index 284671b43f171..f818e35c458e8 100644 --- a/pkgs/development/libraries/aws-c-auth/default.nix +++ b/pkgs/development/libraries/aws-c-auth/default.nix @@ -14,13 +14,13 @@ stdenv.mkDerivation rec { pname = "aws-c-auth"; - version = "0.7.7"; + version = "0.7.10"; src = fetchFromGitHub { owner = "awslabs"; repo = "aws-c-auth"; rev = "v${version}"; - sha256 = "sha256-GO3Sfbi1dwsqQM6rlnEHyE7wolQjdVwD5BAu5ychEuY="; + hash = "sha256-yJ0sgw0y9tIiIHgTPVnfYd8zAGjO83qfeeEzstGH9CE="; }; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/bobcat/default.nix b/pkgs/development/libraries/bobcat/default.nix deleted file mode 100644 index 4e328fe2b2a99..0000000000000 --- a/pkgs/development/libraries/bobcat/default.nix +++ /dev/null @@ -1,44 +0,0 @@ -{ lib, stdenv, fetchFromGitLab, icmake -, libmilter, libX11, openssl, readline -, util-linux, yodl }: - -stdenv.mkDerivation rec { - pname = "bobcat"; - version = "5.11.01"; - - src = fetchFromGitLab { - sha256 = "sha256-JLJKaJmztputIon9JkKzpm3Ch60iwm4Imh9p42crYzA="; - domain = "gitlab.com"; - rev = version; - repo = "bobcat"; - owner = "fbb-git"; - }; - - buildInputs = [ libmilter libX11 openssl readline util-linux ]; - nativeBuildInputs = [ icmake yodl ]; - - setSourceRoot = '' - sourceRoot=$(echo */bobcat) - ''; - - postPatch = '' - substituteInPlace INSTALL.im --replace /usr $out - patchShebangs . - ''; - - buildPhase = '' - ./build libraries all - ./build man - ''; - - installPhase = '' - ./build install x - ''; - - meta = with lib; { - description = "Brokken's Own Base Classes And Templates"; - homepage = "https://fbb-git.gitlab.io/bobcat/"; - license = licenses.gpl3; - platforms = platforms.linux; - }; -} diff --git a/pkgs/development/libraries/caf/default.nix b/pkgs/development/libraries/caf/default.nix index 753dda572d4cd..96593487bbeba 100644 --- a/pkgs/development/libraries/caf/default.nix +++ b/pkgs/development/libraries/caf/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "actor-framework"; - version = "0.19.4"; + version = "0.19.5"; src = fetchFromGitHub { owner = "actor-framework"; repo = "actor-framework"; rev = version; - hash = "sha256-Qi3nyUSwrYBy8lCP+R6/u/WtnZJcgSwb07pZVScAzcU="; + hash = "sha256-G69qZ8aoaRP9Ug+BIhXrYs6xteUG3Zhxbo2O09LEh3s="; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/libraries/catch2/3.nix b/pkgs/development/libraries/catch2/3.nix index f064eb7a4fdb5..aa8bf62059bd5 100644 --- a/pkgs/development/libraries/catch2/3.nix +++ b/pkgs/development/libraries/catch2/3.nix @@ -7,13 +7,13 @@ stdenv.mkDerivation rec { pname = "catch2"; - version = "3.4.0"; + version = "3.5.2"; src = fetchFromGitHub { owner = "catchorg"; repo = "Catch2"; rev = "v${version}"; - hash = "sha256-DqGGfNjKPW9HFJrX9arFHyNYjB61uoL6NabZatTWrr0="; + hash = "sha256-xGPfXjk+oOnR7JqTrZd2pKJxalrlS8CMs7HWDClXaS8="; }; nativeBuildInputs = [ @@ -29,6 +29,11 @@ stdenv.mkDerivation rec { "-DCMAKE_CTEST_ARGUMENTS=-E;ApprovalTests" ]; + # Tests fail on x86_32 if compiled with x87 floats: https://github.com/catchorg/Catch2/issues/2796 + env = lib.optionalAttrs stdenv.isx86_32 { + NIX_CFLAGS_COMPILE = "-msse2 -mfpmath=sse"; + }; + doCheck = true; nativeCheckInputs = [ @@ -41,6 +46,6 @@ stdenv.mkDerivation rec { changelog = "https://github.com/catchorg/Catch2/blob/${src.rev}/docs/release-notes.md"; license = lib.licenses.boost; maintainers = with lib.maintainers; [ dotlambda ]; - platforms = lib.platforms.unix; + platforms = with lib.platforms; unix ++ windows; }; } diff --git a/pkgs/development/libraries/catch2/default.nix b/pkgs/development/libraries/catch2/default.nix index 3c51fa9371d94..56b2016539be5 100644 --- a/pkgs/development/libraries/catch2/default.nix +++ b/pkgs/development/libraries/catch2/default.nix @@ -20,6 +20,6 @@ stdenv.mkDerivation rec { homepage = "http://catch-lib.net"; license = licenses.boost; maintainers = with maintainers; [ edwtjo knedlsepp ]; - platforms = platforms.unix ++ [ "x86_64-windows" ]; + platforms = with platforms; unix ++ windows; }; } diff --git a/pkgs/development/libraries/cglm/default.nix b/pkgs/development/libraries/cglm/default.nix index f9bc0ebb9083c..a4fab015db90c 100644 --- a/pkgs/development/libraries/cglm/default.nix +++ b/pkgs/development/libraries/cglm/default.nix @@ -6,13 +6,13 @@ stdenv.mkDerivation rec { pname = "cglm"; - version = "0.9.1"; + version = "0.9.2"; src = fetchFromGitHub { owner = "recp"; repo = "cglm"; rev = "v${version}"; - sha256 = "sha256-qOPOJ+h1bq5yKkP3ZNeZnRwiOMSgS7bxTk7s/5tREQw="; + sha256 = "sha256-jaG+XGbSx5SaNhGFWLh+1WTB+ya3c5tBZYs9xKIRafI="; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/libraries/clap/default.nix b/pkgs/development/libraries/clap/default.nix index 1da0b31cb10cf..e6c017cb7808f 100644 --- a/pkgs/development/libraries/clap/default.nix +++ b/pkgs/development/libraries/clap/default.nix @@ -2,17 +2,18 @@ , stdenv , fetchFromGitHub , cmake +, testers }: -stdenv.mkDerivation rec { +stdenv.mkDerivation (finalAttrs: { pname = "clap"; - version = "1.1.10"; + version = "1.2.0"; src = fetchFromGitHub { owner = "free-audio"; repo = "clap"; - rev = version; - hash = "sha256-AH3kSCp4Q8Nw3To2vuPuMH/cWm3cmzj2OEH/Azcbdmo="; + rev = finalAttrs.version; + hash = "sha256-BNT2yWIlWk8kzhZteh7TaamliwJI+lzWVs/8XCFsuUc="; }; postPatch = '' @@ -22,11 +23,14 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ cmake ]; + passthru.tests.pkg-config = testers.hasPkgConfigModules { package = finalAttrs.finalPackage; }; + meta = with lib; { description = "Clever Audio Plugin API interface headers"; homepage = "https://cleveraudio.org/"; + pkgConfigModules = [ "clap" ]; license = licenses.mit; platforms = platforms.all; maintainers = with maintainers; [ ris ]; }; -} +}) diff --git a/pkgs/development/libraries/cln/default.nix b/pkgs/development/libraries/cln/default.nix index faa6fde2a7e8b..a7094d18e6ead 100644 --- a/pkgs/development/libraries/cln/default.nix +++ b/pkgs/development/libraries/cln/default.nix @@ -2,11 +2,11 @@ gccStdenv.mkDerivation rec { pname = "cln"; - version = "1.3.6"; + version = "1.3.7"; src = fetchurl { url = "${meta.homepage}${pname}-${version}.tar.bz2"; - sha256 = "0jlq9l4hphk7qqlgqj9ihjp4m3rwjbhk6q4v00lsbgbri07574pl"; + sha256 = "sha256-fH7YR0lYM35N9btX6lF2rQNlAEy7mLYhdlvEYGoQ2Gs="; }; buildInputs = [ gmp ]; diff --git a/pkgs/development/libraries/cmark/default.nix b/pkgs/development/libraries/cmark/default.nix index 830791f6fb312..23d00769ee1b5 100644 --- a/pkgs/development/libraries/cmark/default.nix +++ b/pkgs/development/libraries/cmark/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "cmark"; - version = "0.30.3"; + version = "0.31.0"; src = fetchFromGitHub { owner = "commonmark"; repo = pname; rev = version; - sha256 = "sha256-/7TzaZYP8lndkfRPgCpBbazUBytVLXxqWHYktIsGox0="; + sha256 = "sha256-GBesKTp9DqoFAmCc0RB+XePvzV9g+w+oyrD1nCgyklI="; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/libraries/crossguid/default.nix b/pkgs/development/libraries/crossguid/default.nix index bccba589e031c..e8d85ec23dd5c 100644 --- a/pkgs/development/libraries/crossguid/default.nix +++ b/pkgs/development/libraries/crossguid/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, cmake, libuuid, unstableGitUpdater }: +{ lib, stdenv, fetchFromGitHub, fetchpatch, cmake, libuuid, unstableGitUpdater }: stdenv.mkDerivation rec { pname = "crossguid"; @@ -11,6 +11,16 @@ stdenv.mkDerivation rec { hash = "sha256-37tKPDo4lukl/aaDWWSQYfsBNEnDjE7t6OnEZjBhcvQ="; }; + patches = [ + # Fix the build against gcc-13: + # https://github.com/graeme-hill/crossguid/pull/67 + (fetchpatch { + name = "gcc-13.patch"; + url = "https://github.com/graeme-hill/crossguid/commit/1eb9bea38c320b2b588635cffceaaa2a8d434780.patch"; + hash = "sha256-0qKZUeuNfc3gt+aFeaTt+IexO391GCdjS+9PVJmBKV4="; + }) + ]; + nativeBuildInputs = [ cmake ]; buildInputs = lib.optional stdenv.isLinux libuuid; diff --git a/pkgs/development/libraries/dav1d/default.nix b/pkgs/development/libraries/dav1d/default.nix index 9c5e5101c8afb..670f568e0b6af 100644 --- a/pkgs/development/libraries/dav1d/default.nix +++ b/pkgs/development/libraries/dav1d/default.nix @@ -1,11 +1,20 @@ -{ lib, stdenv, fetchFromGitHub -, meson, ninja, nasm, pkg-config +{ lib +, stdenv +, fetchFromGitHub +, meson +, ninja +, nasm +, pkg-config , xxHash , withTools ? false # "dav1d" binary -, withExamples ? false, SDL2 # "dav1dplay" binary -, useVulkan ? false, libplacebo, vulkan-loader, vulkan-headers +, withExamples ? false +, SDL2 # "dav1dplay" binary +, useVulkan ? false +, libplacebo +, vulkan-loader +, vulkan-headers -# for passthru.tests + # for passthru.tests , ffmpeg , gdal , handbrake @@ -34,7 +43,7 @@ stdenv.mkDerivation rec { ++ lib.optional withExamples SDL2 ++ lib.optionals useVulkan [ libplacebo vulkan-loader vulkan-headers ]; - mesonFlags= [ + mesonFlags = [ "-Denable_tools=${lib.boolToString withTools}" "-Denable_examples=${lib.boolToString withExamples}" ]; @@ -62,7 +71,7 @@ stdenv.mkDerivation rec { changelog = "https://code.videolan.org/videolan/dav1d/-/tags/${version}"; # More technical: https://code.videolan.org/videolan/dav1d/blob/${version}/NEWS license = licenses.bsd2; - platforms = platforms.unix; + platforms = platforms.unix ++ platforms.windows; maintainers = with maintainers; [ primeos ]; }; } diff --git a/pkgs/development/libraries/dbus-cplusplus/default.nix b/pkgs/development/libraries/dbus-cplusplus/default.nix index 7f6e747e6c367..2452f3e8f35cc 100644 --- a/pkgs/development/libraries/dbus-cplusplus/default.nix +++ b/pkgs/development/libraries/dbus-cplusplus/default.nix @@ -32,6 +32,22 @@ stdenv.mkDerivation rec { url = "https://src.fedoraproject.org/rpms/dbus-c++/raw/9f515ace0594c8b2b9f0d41ffe71bc5b78d30eee/f/dbus-c++-template-operators.patch"; hash = "sha256-B8S7z/YH2YEQgaRsBJBBVTx8vHQhHW7z171TZmogpL8="; }) + ] ++ lib.optionals stdenv.hostPlatform.isMusl [ + (fetchpatch { + name = "0001-src-eventloop.cpp-use-portable-method-for-initializi.patch"; + url = "https://github.com/openembedded/meta-openembedded/raw/119e75e48dbf0539b4e440417901458ffff79b38/meta-oe/recipes-core/dbus/libdbus-c++-0.9.0/0001-src-eventloop.cpp-use-portable-method-for-initializi.patch"; + hash = "sha256-GJWvp5F26c88OCGLrFcXaqUl2FMSDCluppMrRQO3rzc="; + }) + (fetchpatch { + name = "0002-tools-generate_proxy.cpp-avoid-possibly-undefined-ui.patch"; + url = "https://github.com/openembedded/meta-openembedded/raw/119e75e48dbf0539b4e440417901458ffff79b38/meta-oe/recipes-core/dbus/libdbus-c++-0.9.0/0002-tools-generate_proxy.cpp-avoid-possibly-undefined-ui.patch"; + hash = "sha256-P9JuG/6k5L6NTiAGH9JRfNcwpNVOV29RQC6fTj0fKZE="; + }) + (fetchpatch { + name = "0003-Fixed-undefined-ssize_t-for-clang-3.8.0-on-FreeBSD.patch"; + url = "https://github.com/openembedded/meta-openembedded/raw/119e75e48dbf0539b4e440417901458ffff79b38/meta-oe/recipes-core/dbus/libdbus-c++-0.9.0/0003-Fixed-undefined-ssize_t-for-clang-3.8.0-on-FreeBSD.patch"; + hash = "sha256-/RCpDvaLIw0kmuBvUGbfnVEvgTKjIQWcSKWheCfgSmM="; + }) ]; nativeBuildInputs = [ pkg-config ]; @@ -45,8 +61,5 @@ stdenv.mkDerivation rec { license = licenses.gpl2Plus; platforms = platforms.linux; maintainers = [ maintainers.goibhniu ]; - # Broken for Musl at 2023-12-28: - # https://github.com/NixOS/nixpkgs/issues/277198 - broken = stdenv.hostPlatform.isMusl; }; } diff --git a/pkgs/development/libraries/dbus/default.nix b/pkgs/development/libraries/dbus/default.nix index a809eda31c0d1..cb5fe9e4fbd3e 100644 --- a/pkgs/development/libraries/dbus/default.nix +++ b/pkgs/development/libraries/dbus/default.nix @@ -43,6 +43,7 @@ stdenv.mkDerivation rec { ''; outputs = [ "out" "dev" "lib" "doc" "man" ]; + separateDebugInfo = true; strictDeps = true; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/dlib/default.nix b/pkgs/development/libraries/dlib/default.nix index 32356fd9ccab7..50709cae8c0b7 100644 --- a/pkgs/development/libraries/dlib/default.nix +++ b/pkgs/development/libraries/dlib/default.nix @@ -3,28 +3,27 @@ , fetchFromGitHub , cmake , pkg-config -, fftw , libpng , libjpeg , libwebp -, openblas +, blas +, lapack +, config , guiSupport ? false , libX11 - - # see http://dlib.net/compile.html , sse4Support ? stdenv.hostPlatform.sse4_1Support , avxSupport ? stdenv.hostPlatform.avxSupport -, cudaSupport ? true -}: - -stdenv.mkDerivation rec { +, cudaSupport ? config.cudaSupport +, cudaPackages +}@inputs: +(if cudaSupport then cudaPackages.backendStdenv else inputs.stdenv).mkDerivation rec { pname = "dlib"; version = "19.24.2"; src = fetchFromGitHub { owner = "davisking"; repo = "dlib"; - rev ="v${version}"; + rev = "v${version}"; sha256 = "sha256-Z1fScuaIHjj2L1uqLIvsZ7ARKNjM+iaA8SAtWUTPFZk="; }; @@ -33,20 +32,53 @@ stdenv.mkDerivation rec { ''; cmakeFlags = [ - (lib.cmakeBool "USE_DLIB_USE_CUDA" cudaSupport) (lib.cmakeBool "USE_SSE4_INSTRUCTIONS" sse4Support) (lib.cmakeBool "USE_AVX_INSTRUCTIONS" avxSupport) + (lib.cmakeBool "DLIB_USE_CUDA" cudaSupport) + ] ++ lib.optionals cudaSupport [ + (lib.cmakeFeature "DLIB_USE_CUDA_COMPUTE_CAPABILITIES" (builtins.concatStringsSep "," (with cudaPackages.flags; map dropDot cudaCapabilities))) ]; - nativeBuildInputs = [ cmake pkg-config ]; + nativeBuildInputs = [ + cmake + pkg-config + ] ++ lib.optionals cudaSupport (with cudaPackages; [ + cuda_nvcc + ]); buildInputs = [ - fftw libpng libjpeg libwebp - openblas - ] ++ lib.optional guiSupport libX11; + blas + lapack + ] + ++ lib.optionals guiSupport [ libX11 ] + ++ lib.optionals config.cudaSupport (with cudaPackages; [ + cuda_cudart.dev + cuda_cudart.lib + cuda_cudart.static + cuda_nvcc.dev + libcublas.dev + libcublas.lib + libcublas.static + libcurand.dev + libcurand.lib + libcurand.static + libcusolver.dev + libcusolver.lib + libcusolver.static + cudnn.dev + cudnn.lib + cudnn.static + cuda_cccl.dev + ]); + + passthru = { + inherit + cudaSupport cudaPackages + sse4Support avxSupport; + }; meta = with lib; { description = "A general purpose cross-platform C++ machine learning library"; diff --git a/pkgs/development/libraries/draco/default.nix b/pkgs/development/libraries/draco/default.nix index ee2c5b8e5b726..c4ed0730cdacf 100644 --- a/pkgs/development/libraries/draco/default.nix +++ b/pkgs/development/libraries/draco/default.nix @@ -16,14 +16,14 @@ let cmakeBool = b: if b then "ON" else "OFF"; in stdenv.mkDerivation (finalAttrs: { - version = "1.5.6"; + version = "1.5.7"; pname = "draco"; src = fetchFromGitHub { owner = "google"; repo = "draco"; rev = finalAttrs.version; - hash = "sha256-2YQMav0JJMbJ2bvnN/Xv90tjE/OWLbrZDO4WlaOvcfI="; + hash = "sha256-p0Mn4kGeBBKL7Hoz4IBgb6Go6MdkgE7WZgxAnt1tE/0="; fetchSubmodules = true; }; diff --git a/pkgs/development/libraries/drogon/default.nix b/pkgs/development/libraries/drogon/default.nix index b5aee15a30454..5919a45467dc2 100644 --- a/pkgs/development/libraries/drogon/default.nix +++ b/pkgs/development/libraries/drogon/default.nix @@ -9,13 +9,13 @@ stdenv.mkDerivation (finalAttrs: { pname = "drogon"; - version = "1.9.1"; + version = "1.9.2"; src = fetchFromGitHub { owner = "drogonframework"; repo = "drogon"; rev = "v${finalAttrs.version}"; - sha256 = "sha256-6F+LRcoBqHEbweqbVFHlR3I9nj1NaYty8zKcR4ZHKxg="; + sha256 = "sha256-/pLYBCwulHkHQAVEhuAlPUJSS/jc3uvGtU0Q0RWPNn0="; fetchSubmodules = true; }; diff --git a/pkgs/development/libraries/editline/default.nix b/pkgs/development/libraries/editline/default.nix index 15a056edb6911..4f891a24f1f0a 100644 --- a/pkgs/development/libraries/editline/default.nix +++ b/pkgs/development/libraries/editline/default.nix @@ -16,6 +16,14 @@ stdenv.mkDerivation rec { url = "https://github.com/troglobit/editline/commit/265c1fb6a0b99bedb157dc7c320f2c9629136518.patch"; sha256 = "sha256-9fhQH0hT8BcykGzOUoT18HBtWjjoXnePSGDJQp8GH30="; }) + + # Pending autoconf-2.72 upstream support: + # https://github.com/troglobit/editline/pull/64 + (fetchpatch { + name = "autoconf-2.72.patch"; + url = "https://github.com/troglobit/editline/commit/f444a316f5178b8e20fe31e7b2d979e651da077e.patch"; + hash = "sha256-m3jExTkPvE+ZBwHzf/A+ugzzfbLmeWYn726l7Po7f10="; + }) ]; nativeBuildInputs = [ autoreconfHook ]; diff --git a/pkgs/development/libraries/enchant/2.x.nix b/pkgs/development/libraries/enchant/2.x.nix index 43f9093848b8f..c843fef4a0efe 100644 --- a/pkgs/development/libraries/enchant/2.x.nix +++ b/pkgs/development/libraries/enchant/2.x.nix @@ -22,6 +22,8 @@ stdenv.mkDerivation rec { hash = "sha256-wcVxnypZfOPgbJOM+5n7aX2gk96nuFfMAE3B3PG7oYI="; }; + strictDeps = true; + nativeBuildInputs = [ groff pkg-config @@ -33,7 +35,7 @@ stdenv.mkDerivation rec { nuspell ]; - nativeCheckInputs = [ + checkInputs = [ unittest-cpp ]; diff --git a/pkgs/development/libraries/entt/default.nix b/pkgs/development/libraries/entt/default.nix index 44e0b9ed1f058..2f7a86c7f1135 100644 --- a/pkgs/development/libraries/entt/default.nix +++ b/pkgs/development/libraries/entt/default.nix @@ -1,13 +1,13 @@ { lib, stdenv, fetchFromGitHub, cmake }: stdenv.mkDerivation rec { pname = "entt"; - version = "3.12.2"; + version = "3.13.1"; src = fetchFromGitHub { owner = "skypjack"; repo = "entt"; rev = "v${version}"; - sha256 = "sha256-gzoea3IbmpkIZYrfTZA6YgcnDU5EKdXF5Y7Yz2Uaj4A="; + hash = "sha256-TZuKgpLJCy3uct39SFSVi4b4lyldcfJ3AQNrz3OT3Ow="; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/libraries/example-robot-data/default.nix b/pkgs/development/libraries/example-robot-data/default.nix index 11b6898382263..b2e665bbc4a92 100644 --- a/pkgs/development/libraries/example-robot-data/default.nix +++ b/pkgs/development/libraries/example-robot-data/default.nix @@ -8,14 +8,14 @@ stdenv.mkDerivation (finalAttrs: { pname = "example-robot-data"; - version = "4.0.9"; + version = "4.1.0"; src = fetchFromGitHub { owner = "Gepetto"; repo = "example-robot-data"; rev = "v${finalAttrs.version}"; fetchSubmodules = true; - hash = "sha256-dLW8QaQhTTDcE4QCP9uV4ykOqwc3nbPUmF1B77r8CHQ="; + hash = "sha256-Heq+c8SSYNO8ksTv5FphRBRStlTakm9T66jlPXon5tI="; }; strictDeps = true; diff --git a/pkgs/development/libraries/faudio/default.nix b/pkgs/development/libraries/faudio/default.nix index a393d9577fc11..96734d7325c1b 100644 --- a/pkgs/development/libraries/faudio/default.nix +++ b/pkgs/development/libraries/faudio/default.nix @@ -4,13 +4,13 @@ stdenv.mkDerivation rec { pname = "faudio"; - version = "23.12"; + version = "24.02"; src = fetchFromGitHub { owner = "FNA-XNA"; repo = "FAudio"; rev = version; - sha256 = "sha256-bftS5gcIzvJlv9K2hKIIXl5lzP4RVwSK5/kxpQrJe/A="; + sha256 = "sha256-xEieWgPNSpRJNYh65F2+NLXVZIlKA5ZE+959+s9zQ/I="; }; nativeBuildInputs = [cmake]; diff --git a/pkgs/development/libraries/fbjni/default.nix b/pkgs/development/libraries/fbjni/default.nix index 1a5228f4d860e..20d47cac1fa31 100644 --- a/pkgs/development/libraries/fbjni/default.nix +++ b/pkgs/development/libraries/fbjni/default.nix @@ -19,12 +19,20 @@ stdenv.mkDerivation rec { }; patches = [ + # Upstram fix for builds on GCC 13. Should be removable with next release after 0.5.1 + (fetchpatch { + name = "add-cstdint-include.patch"; + url = "https://github.com/facebookincubator/fbjni/commit/59461eff6c7881d58e958287481e1f1cd99e08d3.patch"; + hash = "sha256-r27C+ODTCZdd1tEz3cevnNNyZlrRhq1jOzwnIYlkglM="; + }) + # Part of https://github.com/facebookincubator/fbjni/pull/76 # fix cmake file installation directory (fetchpatch { url = "https://github.com/facebookincubator/fbjni/commit/ab02e60b5da28647bfcc864b0bb1b9a90504cdb1.patch"; sha256 = "sha256-/h6kosulRH/ZAU2u0zRSaNDK39jsnFt9TaSxyBllZqM="; }) + # install headers (fetchpatch { url = "https://github.com/facebookincubator/fbjni/commit/74e125caa9a815244f1e6bd08eaba57d015378b4.patch"; diff --git a/pkgs/development/libraries/ffmpeg/generic.nix b/pkgs/development/libraries/ffmpeg/generic.nix index 512ec3a4bf168..0f5d889845669 100644 --- a/pkgs/development/libraries/ffmpeg/generic.nix +++ b/pkgs/development/libraries/ffmpeg/generic.nix @@ -44,7 +44,6 @@ , withFreetype ? withHeadlessDeps # Needed for drawtext filter , withFrei0r ? withFullDeps # frei0r video filtering , withFribidi ? withFullDeps # Needed for drawtext filter -, withGlslang ? withFullDeps && !stdenv.isDarwin && lib.versionAtLeast version "5.0" , withGme ? withFullDeps # Game Music Emulator , withGnutls ? withHeadlessDeps , withGsm ? withFullDeps # GSM de/encoder @@ -73,6 +72,7 @@ , withRtmp ? false # RTMP[E] support , withSamba ? withFullDeps && !stdenv.isDarwin # Samba protocol , withSdl2 ? withSmallDeps +, withShaderc ? withFullDeps && !stdenv.isDarwin && lib.versionAtLeast version "5.0" , withSoxr ? withHeadlessDeps # Resampling via soxr , withSpeex ? withHeadlessDeps # Speex de/encoder , withSrt ? withHeadlessDeps # Secure Reliable Transport (SRT) protocol @@ -86,7 +86,7 @@ , withVaapi ? withHeadlessDeps && (with stdenv; isLinux || isFreeBSD) # Vaapi hardware acceleration , withVdpau ? withSmallDeps # Vdpau hardware acceleration , withVidStab ? withFullDeps # Video stabilization -, withVmaf ? withFullDeps && withGPLv3 && !stdenv.isAarch64 # Netflix's VMAF (Video Multi-Method Assessment Fusion) +, withVmaf ? withFullDeps && withGPLv3 && !stdenv.isAarch64 && lib.versionAtLeast version "5" # Netflix's VMAF (Video Multi-Method Assessment Fusion) , withVoAmrwbenc ? withFullDeps # AMR-WB encoder , withVorbis ? withHeadlessDeps # Vorbis de/encoding, native encoder exists , withVpx ? withHeadlessDeps && stdenv.buildPlatform == stdenv.hostPlatform # VP8 & VP9 de/encoding @@ -189,7 +189,6 @@ , frei0r , fribidi , game-music-emu -, glslang , gnutls , gsm , intel-media-sdk @@ -213,6 +212,7 @@ , libopenmpt , libopus , libplacebo +, libplacebo_5 , libpulseaudio , libraw1394 , librsvg @@ -244,6 +244,7 @@ , rtmpdump , samba , SDL2 +, shaderc , soxr , speex , srt @@ -349,14 +350,14 @@ stdenv.mkDerivation (finalAttrs: { ''; patches = map (patch: fetchpatch patch) (extraPatches - ++ (lib.optional (lib.versionAtLeast version "6" && lib.versionOlder version "6.1") + ++ (lib.optional (lib.versionAtLeast finalAttrs.version "6" && lib.versionOlder finalAttrs.version "6.1") { # this can be removed post 6.1 name = "fix_aacps_tablegen"; url = "https://git.ffmpeg.org/gitweb/ffmpeg.git/patch/814178f92647be2411516bbb82f48532373d2554"; hash = "sha256-FQV9/PiarPXCm45ldtCsxGHjlrriL8DKpn1LaKJ8owI="; } ) - ++ (lib.optional (stdenv.isDarwin && lib.versionAtLeast version "6.1" && lib.versionOlder version "6.2") + ++ (lib.optional (lib.versionAtLeast finalAttrs.version "6.1" && lib.versionOlder finalAttrs.version "6.2") { # this can be removed post 6.1 name = "fix_build_failure_due_to_PropertyKey_EncoderID"; url = "https://git.ffmpeg.org/gitweb/ffmpeg.git/patch/cb049d377f54f6b747667a93e4b719380c3e9475"; @@ -416,7 +417,7 @@ stdenv.mkDerivation (finalAttrs: { (enableFeature buildAvdevice "avdevice") (enableFeature buildAvfilter "avfilter") (enableFeature buildAvformat "avformat") - ] ++ optionals (lib.versionOlder version "5") [ + ] ++ optionals (lib.versionOlder finalAttrs.version "5") [ # Ffmpeg > 4 doesn't know about the flag anymore (enableFeature buildAvresample "avresample") ] ++ [ @@ -476,7 +477,7 @@ stdenv.mkDerivation (finalAttrs: { (enableFeature withModplug "libmodplug") (enableFeature withMysofa "libmysofa") (enableFeature withOpus "libopus") - (optionalString (versionAtLeast version "5.0" && withLibplacebo) "--enable-libplacebo") + (optionalString (versionAtLeast finalAttrs.version "5.0" && withLibplacebo) "--enable-libplacebo") (enableFeature withSvg "librsvg") (enableFeature withSrt "libsrt") (enableFeature withSsh "libssh") @@ -524,7 +525,7 @@ stdenv.mkDerivation (finalAttrs: { (enableFeature withZimg "libzimg") (enableFeature withZlib "zlib") (enableFeature withVulkan "vulkan") - (enableFeature withGlslang "libglslang") + (optionalString (lib.versionAtLeast finalAttrs.version "5") (enableFeature withShaderc "libshaderc")) (enableFeature withSamba "libsmbclient") /* * Developer flags @@ -560,7 +561,7 @@ stdenv.mkDerivation (finalAttrs: { # TODO This was always in buildInputs before, why? buildInputs = optionals withFullDeps [ libdc1394 ] ++ optionals (withFullDeps && !stdenv.isDarwin) [ libraw1394 ] # TODO where does this belong to - ++ optionals (withNvdec || withNvenc) [ (if (lib.versionAtLeast version "6") then nv-codec-headers-12 else nv-codec-headers) ] + ++ optionals (withNvdec || withNvenc) [ (if (lib.versionAtLeast finalAttrs.version "6") then nv-codec-headers-12 else nv-codec-headers) ] ++ optionals withAlsa [ alsa-lib ] ++ optionals withAom [ libaom ] ++ optionals withAribcaption [ libaribcaption ] @@ -577,14 +578,13 @@ stdenv.mkDerivation (finalAttrs: { ++ optionals withFreetype [ freetype ] ++ optionals withFrei0r [ frei0r ] ++ optionals withFribidi [ fribidi ] - ++ optionals withGlslang [ glslang ] ++ optionals withGme [ game-music-emu ] ++ optionals withGnutls [ gnutls ] ++ optionals withGsm [ gsm ] ++ optionals withIconv [ libiconv ] # On Linux this should be in libc, do we really need it? ++ optionals withJack [ libjack2 ] ++ optionals withLadspa [ ladspaH ] - ++ optionals withLibplacebo [ libplacebo vulkan-headers ] + ++ optionals withLibplacebo [ (if (lib.versionAtLeast finalAttrs.version "6.1") then libplacebo else libplacebo_5) vulkan-headers ] ++ optionals withLzma [ xz ] ++ optionals withMfx [ intel-media-sdk ] ++ optionals withModplug [ libmodplug ] @@ -604,6 +604,7 @@ stdenv.mkDerivation (finalAttrs: { ++ optionals withRtmp [ rtmpdump ] ++ optionals withSamba [ samba ] ++ optionals withSdl2 [ SDL2 ] + ++ optionals withShaderc [ shaderc ] ++ optionals withSoxr [ soxr ] ++ optionals withSpeex [ speex ] ++ optionals withSrt [ srt ] @@ -692,7 +693,7 @@ stdenv.mkDerivation (finalAttrs: { meta = with lib; { description = "A complete, cross-platform solution to record, convert and stream audio and video"; homepage = "https://www.ffmpeg.org/"; - changelog = "https://github.com/FFmpeg/FFmpeg/blob/n${version}/Changelog"; + changelog = "https://github.com/FFmpeg/FFmpeg/blob/n${finalAttrs.version}/Changelog"; longDescription = '' FFmpeg is the leading multimedia framework, able to decode, encode, transcode, mux, demux, stream, filter and play pretty much anything that humans and machines diff --git a/pkgs/development/libraries/folly/default.nix b/pkgs/development/libraries/folly/default.nix index 4d98c163c6d3d..22d395785434a 100644 --- a/pkgs/development/libraries/folly/default.nix +++ b/pkgs/development/libraries/folly/default.nix @@ -4,7 +4,6 @@ , boost , cmake , double-conversion -, fetchpatch , fmt_8 , gflags , glog @@ -64,12 +63,21 @@ stdenv.mkDerivation rec { # temporary hack until folly builds work on aarch64, # see https://github.com/facebook/folly/issues/1880 "-DCMAKE_LIBRARY_ARCHITECTURE=${if stdenv.isx86_64 then "x86_64" else "dummy"}" + + # ensure correct dirs in $dev/lib/pkgconfig/libfolly.pc + # see https://github.com/NixOS/nixpkgs/issues/144170 + "-DCMAKE_INSTALL_INCLUDEDIR=include" + "-DCMAKE_INSTALL_LIBDIR=lib" ]; + # split outputs to reduce downstream closure sizes + outputs = [ "out" "dev" ]; + + # patch prefix issues again + # see https://github.com/NixOS/nixpkgs/issues/144170 postFixup = '' - substituteInPlace "$out"/lib/pkgconfig/libfolly.pc \ - --replace '=''${prefix}//' '=/' \ - --replace '=''${exec_prefix}//' '=/' + substituteInPlace $dev/lib/cmake/${pname}/${pname}-targets-release.cmake \ + --replace '$'{_IMPORT_PREFIX}/lib/ $out/lib/ ''; # folly-config.cmake, will `find_package` these, thus there should be diff --git a/pkgs/development/libraries/fontconfig/default.nix b/pkgs/development/libraries/fontconfig/default.nix index eadb30352e9a9..9ff72c2021932 100644 --- a/pkgs/development/libraries/fontconfig/default.nix +++ b/pkgs/development/libraries/fontconfig/default.nix @@ -1,7 +1,6 @@ { stdenv , lib , fetchurl -, fetchpatch2 , pkg-config , python3 , freetype @@ -15,25 +14,15 @@ stdenv.mkDerivation rec { pname = "fontconfig"; - version = "2.14.2"; + version = "2.15.0"; outputs = [ "bin" "dev" "lib" "out" ]; # $out contains all the config src = fetchurl { url = "https://www.freedesktop.org/software/fontconfig/release/${pname}-${version}.tar.xz"; - hash = "sha256-26aVtXvOFQI9LO7e+CBiwrkl5R9dTMSu9zbPE/YKRos="; + hash = "sha256-Y6BljQ4G4PqIYQZFK1jvBPIfWCAuoCqUw53g0zNdfA4="; }; - patches = [ - # Provide 11-lcdfilter-none.conf for NixOS module - # https://gitlab.freedesktop.org/fontconfig/fontconfig/-/merge_requests/268 - (fetchpatch2 { - name = "add-optional-11-lcdfilter-none-configuration.patch"; - url = "https://gitlab.freedesktop.org/fontconfig/fontconfig/-/commit/c2666a6d9a6ed18b1bfcef8176e25f62993e24db.patch"; - hash = "sha256-UBzkxy3uxFO+g0aQtPnBZv7OncgQdinwzNwWS8ngjcE="; - }) - ]; - nativeBuildInputs = [ autoreconfHook gperf diff --git a/pkgs/development/libraries/fontconfig/make-fonts-conf.nix b/pkgs/development/libraries/fontconfig/make-fonts-conf.nix index aa84de4dcecdb..cfe0a21e1d35c 100644 --- a/pkgs/development/libraries/fontconfig/make-fonts-conf.nix +++ b/pkgs/development/libraries/fontconfig/make-fonts-conf.nix @@ -1,16 +1,29 @@ -{ runCommand, stdenv, lib, libxslt, fontconfig, dejavu_fonts, fontDirectories }: +{ runCommand, stdenv, lib, libxslt, fontconfig, dejavu_fonts, fontDirectories +, impureFontDirectories ? [ + # nix user profile + "~/.nix-profile/lib/X11/fonts" "~/.nix-profile/share/fonts" + ] + ++ lib.optional stdenv.isDarwin "~/Library/Fonts" + ++ [ + # FHS paths for non-NixOS platforms + "/usr/share/fonts" "/usr/local/share/fonts" + ] + # darwin paths + ++ lib.optionals stdenv.isDarwin [ "/Library/Fonts" "/System/Library/Fonts" ] + # nix default profile + ++ [ "/nix/var/nix/profiles/default/lib/X11/fonts" "/nix/var/nix/profiles/default/share/fonts" ] }: runCommand "fonts.conf" { nativeBuildInputs = [ libxslt ]; buildInputs = [ fontconfig ]; + inherit fontDirectories; # Add a default font for non-nixos systems, <1MB and in nixos defaults. - fontDirectories = fontDirectories ++ [ dejavu_fonts.minimal ] - # further non-nixos fonts on darwin - ++ lib.optionals stdenv.isDarwin [ "/System/Library/Fonts" "/Library/Fonts" "~/Library/Fonts" ]; + impureFontDirectories = impureFontDirectories ++ [ dejavu_fonts.minimal ]; } '' xsltproc --stringparam fontDirectories "$fontDirectories" \ + --stringparam impureFontDirectories "$impureFontDirectories" \ --path ${fontconfig.out}/share/xml/fontconfig \ ${./make-fonts-conf.xsl} ${fontconfig.out}/etc/fonts/fonts.conf \ > $out diff --git a/pkgs/development/libraries/fontconfig/make-fonts-conf.xsl b/pkgs/development/libraries/fontconfig/make-fonts-conf.xsl index ed51b62a1d088..d04e4ffab967b 100644 --- a/pkgs/development/libraries/fontconfig/make-fonts-conf.xsl +++ b/pkgs/development/libraries/fontconfig/make-fonts-conf.xsl @@ -15,6 +15,7 @@ <xsl:output method='xml' encoding="UTF-8" doctype-system="urn:fontconfig:fonts.dtd" /> <xsl:param name="fontDirectories" /> + <xsl:param name="impureFontDirectories" /> <xsl:template match="/fontconfig"> @@ -23,29 +24,26 @@ <!-- the first cachedir will be used to store the cache --> <cachedir prefix="xdg">fontconfig</cachedir> + <xsl:text>
</xsl:text> <!-- /var/cache/fontconfig is useful for non-nixos systems --> <cachedir>/var/cache/fontconfig</cachedir> + <xsl:text>
</xsl:text> <!-- system-wide config --> <include ignore_missing="yes">/etc/fonts/conf.d</include> + <xsl:text>
</xsl:text> <dir prefix="xdg">fonts</dir> + <xsl:text>
</xsl:text> <xsl:for-each select="str:tokenize($fontDirectories)"> <dir><xsl:value-of select="." /></dir> <xsl:text>
</xsl:text> </xsl:for-each> - <!-- nix user profile --> - <dir>~/.nix-profile/lib/X11/fonts</dir> - <dir>~/.nix-profile/share/fonts</dir> - - <!-- FHS paths for non-NixOS platforms --> - <dir>/usr/share/fonts</dir> - <dir>/usr/local/share/fonts</dir> - - <!-- nix default profile --> - <dir>/nix/var/nix/profiles/default/lib/X11/fonts</dir> - <dir>/nix/var/nix/profiles/default/share/fonts</dir> + <xsl:for-each select="str:tokenize($impureFontDirectories)"> + <dir><xsl:value-of select="." /></dir> + <xsl:text>
</xsl:text> + </xsl:for-each> </fontconfig> diff --git a/pkgs/development/libraries/frei0r/default.nix b/pkgs/development/libraries/frei0r/default.nix index 0215b82a828cc..1b0a3007710b4 100644 --- a/pkgs/development/libraries/frei0r/default.nix +++ b/pkgs/development/libraries/frei0r/default.nix @@ -1,7 +1,7 @@ { lib , config , stdenv -, fetchurl +, fetchFromGitHub , cairo , cmake , opencv @@ -13,11 +13,13 @@ stdenv.mkDerivation rec { pname = "frei0r-plugins"; - version = "1.8.0"; + version = "2.3.2"; - src = fetchurl { - url = "https://files.dyne.org/frei0r/releases/${pname}-${version}.tar.gz"; - hash = "sha256-RaKGVcrwVyJ7RCuADKOJnpNJBRXIHiEtIZ/fSnYT9cQ="; + src = fetchFromGitHub { + owner = "dyne"; + repo = "frei0r"; + rev = "v${version}"; + hash = "sha256-shPCCKcmacSB/mqwLU6BPR1p+/9Myg759MMehj9yijI="; }; nativeBuildInputs = [ cmake pkg-config ]; diff --git a/pkgs/development/libraries/functionalplus/default.nix b/pkgs/development/libraries/functionalplus/default.nix index b456dd8873448..af25030ab560f 100644 --- a/pkgs/development/libraries/functionalplus/default.nix +++ b/pkgs/development/libraries/functionalplus/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "functionalplus"; - version = "0.2.20-p0"; + version = "0.2.22"; src = fetchFromGitHub { owner = "Dobiasd"; repo = "FunctionalPlus"; rev = "v${version}"; - sha256 = "sha256-PKd3gx63VTxyq1q0v7WaKXVA0oICpZQfVsKsgUml9wk="; + sha256 = "sha256-y0IRmgG9lhWO4IR4G9/VP2a3B+ORTnF7MCf4FU5EuMk="; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/libraries/gcr/default.nix b/pkgs/development/libraries/gcr/default.nix index 0f03e9184e196..1fec6100bf2b0 100644 --- a/pkgs/development/libraries/gcr/default.nix +++ b/pkgs/development/libraries/gcr/default.nix @@ -26,13 +26,13 @@ stdenv.mkDerivation rec { pname = "gcr"; - version = "3.41.1"; + version = "3.41.2"; outputs = [ "out" "dev" "devdoc" ]; src = fetchurl { url = "mirror://gnome/sources/${pname}/${lib.versions.majorMinor version}/${pname}-${version}.tar.xz"; - sha256 = "u3Eoo8L+u/7pwDuQ131JjQzrI3sHiYAtYBhcccS+ok8="; + sha256 = "utEPPFU6DhhUZJq1nFskNNoiyhpUrmE48fU5YVZ+Grc="; }; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/gd/default.nix b/pkgs/development/libraries/gd/default.nix index c9845feb96783..af96d9d06d27b 100644 --- a/pkgs/development/libraries/gd/default.nix +++ b/pkgs/development/libraries/gd/default.nix @@ -44,8 +44,8 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ autoconf automake pkg-config ]; - buildInputs = [ zlib fontconfig freetype libpng libjpeg libwebp libtiff libavif ] - ++ lib.optional withXorg libXpm; + buildInputs = [ zlib freetype libpng libjpeg libwebp libtiff libavif ] + ++ lib.optionals withXorg [ fontconfig libXpm ]; outputs = [ "bin" "dev" "out" ]; diff --git a/pkgs/development/libraries/gdcm/default.nix b/pkgs/development/libraries/gdcm/default.nix index 2a4fdaca27254..9d6db6fca684b 100644 --- a/pkgs/development/libraries/gdcm/default.nix +++ b/pkgs/development/libraries/gdcm/default.nix @@ -19,13 +19,13 @@ stdenv.mkDerivation rec { pname = "gdcm"; - version = "3.0.22"; + version = "3.0.23"; src = fetchFromGitHub { owner = "malaterre"; repo = "GDCM"; rev = "refs/tags/v${version}"; - hash = "sha256-geWNGbBJGKPs5hNO42vtVOj0rOWyM6zmcocvRhWW4s0="; + hash = "sha256-zwIPWcjTrfbdNBzAqwV6lU2l6sx+e4Yi7dprdem6AeE="; }; cmakeFlags = [ diff --git a/pkgs/development/libraries/gfxstream/default.nix b/pkgs/development/libraries/gfxstream/default.nix index bb88fe9f84964..196bca7cdc5f7 100644 --- a/pkgs/development/libraries/gfxstream/default.nix +++ b/pkgs/development/libraries/gfxstream/default.nix @@ -29,6 +29,6 @@ stdenv.mkDerivation { description = "Graphics Streaming Kit"; license = licenses.free; # https://android.googlesource.com/platform/hardware/google/gfxstream/+/refs/heads/main/LICENSE maintainers = with maintainers; [ qyliss ]; - platforms = platforms.darwin ++ platforms.linux; + platforms = aemu.meta.platforms; }; } diff --git a/pkgs/development/libraries/glfw/3.x.nix b/pkgs/development/libraries/glfw/3.x.nix index 4e01ca5c2b6ef..01db789a60bdc 100644 --- a/pkgs/development/libraries/glfw/3.x.nix +++ b/pkgs/development/libraries/glfw/3.x.nix @@ -6,14 +6,14 @@ }: stdenv.mkDerivation rec { - version = "3.3.8"; + version = "3.3.9"; pname = "glfw"; src = fetchFromGitHub { owner = "glfw"; repo = "GLFW"; rev = version; - sha256 = "sha256-4+H0IXjAwbL5mAWfsIVhW0BSJhcWjkQx4j2TrzZ3aIo="; + sha256 = "sha256-DlPRNGCBr6XF9Jn8kWs5lCRTyjPeDt/69PNDzBDhoyg="; }; # Fix linkage issues on X11 (https://github.com/NixOS/nixpkgs/issues/142583) diff --git a/pkgs/development/libraries/glibmm/2.68.nix b/pkgs/development/libraries/glibmm/2.68.nix index 187ca86559625..c3c444f407e00 100644 --- a/pkgs/development/libraries/glibmm/2.68.nix +++ b/pkgs/development/libraries/glibmm/2.68.nix @@ -13,13 +13,13 @@ stdenv.mkDerivation rec { pname = "glibmm"; - version = "2.78.0"; + version = "2.78.1"; outputs = [ "out" "dev" ]; src = fetchurl { url = "mirror://gnome/sources/${pname}/${lib.versions.majorMinor version}/${pname}-${version}.tar.xz"; - sha256 = "sha256-XS6HJWSZbwKgbYu6w2d+fDlK+LAN0VJq69R6+EKj71A="; + sha256 = "sha256-9HPyl10mw0CeES7RHtNkBvs4Q/qXXfV1wi1MuEMIX2E="; }; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/gnutls/default.nix b/pkgs/development/libraries/gnutls/default.nix index bbbdf19a19095..b8c95653e366b 100644 --- a/pkgs/development/libraries/gnutls/default.nix +++ b/pkgs/development/libraries/gnutls/default.nix @@ -35,11 +35,11 @@ in stdenv.mkDerivation rec { pname = "gnutls"; - version = "3.8.2"; + version = "3.8.3"; src = fetchurl { url = "mirror://gnupg/gnutls/v${lib.versions.majorMinor version}/gnutls-${version}.tar.xz"; - hash = "sha256-52XlAW/6m53SQ+NjoEYNV3B0RE7iSRJn2y6WycKt73c="; + hash = "sha256-90/FlUsn1Oxt+7Ed6ph4iLWxJCiaNwOvytoO5SD0Fz4="; }; outputs = [ "bin" "dev" "out" "man" "devdoc" ]; diff --git a/pkgs/development/libraries/gperftools/default.nix b/pkgs/development/libraries/gperftools/default.nix index da40c66e9fe53..132ae64577a71 100644 --- a/pkgs/development/libraries/gperftools/default.nix +++ b/pkgs/development/libraries/gperftools/default.nix @@ -4,6 +4,7 @@ , fetchpatch , autoreconfHook , libunwind +, perl }: stdenv.mkDerivation rec { @@ -29,7 +30,8 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ autoreconfHook ]; # tcmalloc uses libunwind in a way that works correctly only on non-ARM dynamically linked linux - buildInputs = lib.optional (stdenv.isLinux && !(stdenv.hostPlatform.isAarch || stdenv.hostPlatform.isStatic )) libunwind; + buildInputs = [ perl ] + ++ lib.optional (stdenv.isLinux && !(stdenv.hostPlatform.isAarch || stdenv.hostPlatform.isStatic )) libunwind; # Disable general dynamic TLS on AArch to support dlopen()'ing the library: # https://bugzilla.redhat.com/show_bug.cgi?id=1483558 diff --git a/pkgs/development/libraries/highfive/default.nix b/pkgs/development/libraries/highfive/default.nix index de9dd96424991..364c99fa29234 100644 --- a/pkgs/development/libraries/highfive/default.nix +++ b/pkgs/development/libraries/highfive/default.nix @@ -12,13 +12,13 @@ assert mpiSupport -> mpi != null; stdenv.mkDerivation rec { pname = "highfive${lib.optionalString mpiSupport "-mpi"}"; - version = "2.8.0"; + version = "2.9.0"; src = fetchFromGitHub { owner = "BlueBrain"; repo = "HighFive"; rev = "v${version}"; - sha256 = "sha256-INDQ0RqPMSsKXQ/QVDhpCg4qzghLA3zQUViduflLUFY="; + sha256 = "sha256-4n7J0qf4josYVsbVF4u+NLdecpA9gqHXCfibr0QfyJ4="; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/libraries/hpp-fcl/default.nix b/pkgs/development/libraries/hpp-fcl/default.nix index 98748de393d55..c91d3cbaac4f8 100644 --- a/pkgs/development/libraries/hpp-fcl/default.nix +++ b/pkgs/development/libraries/hpp-fcl/default.nix @@ -14,14 +14,14 @@ stdenv.mkDerivation (finalAttrs: { pname = "hpp-fcl"; - version = "2.4.0"; + version = "2.4.1"; src = fetchFromGitHub { owner = "humanoid-path-planner"; repo = finalAttrs.pname; rev = "v${finalAttrs.version}"; fetchSubmodules = true; - hash = "sha256-qeAO1FV28L2nbQ/2mDeLMuWS2+FexQ1ORCtt+ztWHj0="; + hash = "sha256-Suow6dvDZI0uS/CkzfkWIxYjn+i4Fbyd2EnqlxM2gMY="; }; strictDeps = true; diff --git a/pkgs/development/libraries/hpx/default.nix b/pkgs/development/libraries/hpx/default.nix index 2464e95c6b6d7..bcaf1233d3006 100644 --- a/pkgs/development/libraries/hpx/default.nix +++ b/pkgs/development/libraries/hpx/default.nix @@ -1,18 +1,29 @@ -{ lib, stdenv, fetchFromGitHub, asio, boost, cmake, hwloc, gperftools, ninja -, pkg-config, python3 }: +{ lib +, stdenv +, fetchFromGitHub +, asio +, boost +, cmake +, hwloc +, gperftools +, ninja +, pkg-config +, python3 +}: stdenv.mkDerivation rec { pname = "hpx"; - version = "1.8.1"; + version = "1.9.1"; src = fetchFromGitHub { owner = "STEllAR-GROUP"; repo = "hpx"; - rev = version; - sha256 = "sha256-YJ4wHaPE5E6ngUAYrQB1SkW4IoHW71tUDKKNANVA9Xw="; + rev = "v${version}"; + hash = "sha256-1gLDwgCqv+3+rOSG7a3fFsnjqfKpnPpWnBmrW+z+jWw="; }; - buildInputs = [ asio boost hwloc gperftools ]; + propagatedBuildInputs = [ hwloc ]; + buildInputs = [ asio boost gperftools ]; nativeBuildInputs = [ cmake pkg-config python3 ]; strictDeps = true; diff --git a/pkgs/development/libraries/httplib/default.nix b/pkgs/development/libraries/httplib/default.nix index a65440848bee8..ad27a98fa60b0 100644 --- a/pkgs/development/libraries/httplib/default.nix +++ b/pkgs/development/libraries/httplib/default.nix @@ -7,13 +7,13 @@ stdenv.mkDerivation rec { pname = "httplib"; - version = "0.14.3"; + version = "0.15.2"; src = fetchFromGitHub { owner = "yhirose"; repo = "cpp-httplib"; rev = "v${version}"; - hash = "sha256-53EBZTpz0INtjVSmjvg7XOQf0Bs2ADVe2//+nK6xRyE="; + hash = "sha256-DNktnRckqiZf0EQ96LfweDvBNgcX8u3Gry1LCs/Qj74="; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/libraries/igraph/default.nix b/pkgs/development/libraries/igraph/default.nix index f8232c35dc01a..b0017e03ebc7f 100644 --- a/pkgs/development/libraries/igraph/default.nix +++ b/pkgs/development/libraries/igraph/default.nix @@ -26,21 +26,17 @@ assert (blas.isILP64 == lapack.isILP64 && stdenv.mkDerivation (finalAttrs: { pname = "igraph"; - version = "0.10.8"; + version = "0.10.9"; src = fetchFromGitHub { owner = "igraph"; repo = finalAttrs.pname; rev = finalAttrs.version; - hash = "sha256-suma1iS9NdJwU/4EQl6qoFyD4bErLSkY+0yxgh3dHkw="; + hash = "sha256-Iaez6Rrd684vsraCkEH5a16rXfc53MyPXcYf3sOcaOY="; }; postPatch = '' echo "${finalAttrs.version}" > IGRAPH_VERSION - '' - # https://github.com/igraph/igraph/issues/2340 - + lib.optionalString stdenv.isDarwin '' - sed -i "/safelocale/d" tests/CMakeLists.txt ''; outputs = [ "out" "dev" "doc" ]; @@ -92,7 +88,10 @@ stdenv.mkDerivation (finalAttrs: { cp -r doc "$out/share" ''; - postFixup = lib.optionalString stdenv.isDarwin '' + postFixup = '' + substituteInPlace $dev/lib/cmake/igraph/igraph-targets.cmake \ + --replace-fail "_IMPORT_PREFIX \"$out\"" "_IMPORT_PREFIX \"$dev\"" + '' + lib.optionalString stdenv.isDarwin '' install_name_tool -change libblas.dylib ${blas}/lib/libblas.dylib $out/lib/libigraph.dylib ''; diff --git a/pkgs/development/libraries/imgui/default.nix b/pkgs/development/libraries/imgui/default.nix index 73bc80ef9d5bf..79186d9149f79 100644 --- a/pkgs/development/libraries/imgui/default.nix +++ b/pkgs/development/libraries/imgui/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "imgui"; - version = "1.90"; + version = "1.90.1"; src = fetchFromGitHub { owner = "ocornut"; repo = "imgui"; rev = "v${version}"; - sha256 = "sha256-rJMWCPVhho34NcPvJZaB5d6EbZkJyLXEfeotplOOaiA="; + sha256 = "sha256-gf47uLeNiXQic43buB5ZnMqiotlUfIyAsP+3H7yJuFg="; }; dontBuild = true; diff --git a/pkgs/development/libraries/imtui/default.nix b/pkgs/development/libraries/imtui/default.nix index e534a55ae5a42..86b488c1a888d 100644 --- a/pkgs/development/libraries/imtui/default.nix +++ b/pkgs/development/libraries/imtui/default.nix @@ -8,6 +8,7 @@ , withCurl ? (!withEmscripten), curl , withNcurses ? (!withEmscripten), ncurses , static ? withEmscripten +, darwin }: stdenv.mkDerivation rec { @@ -25,10 +26,14 @@ stdenv.mkDerivation rec { buildInputs = lib.optional withEmscripten emscripten ++ lib.optional withCurl curl - ++ lib.optional withNcurses ncurses; + ++ lib.optional withNcurses ncurses + ++ lib.optional stdenv.isDarwin darwin.apple_sdk.frameworks.Cocoa; postPatch = '' cp -r ${imgui}/include/imgui third-party/imgui + '' + lib.optionalString (lib.versionAtLeast imgui.version "1.90.1") '' + substituteInPlace src/imtui-impl-{emscripten,ncurses}.cpp \ + --replace "ImGuiKey_KeyPadEnter" "ImGuiKey_KeypadEnter" ''; cmakeFlags = [ @@ -54,5 +59,6 @@ stdenv.mkDerivation rec { changelog = "https://github.com/ggerganov/imtui/blob/${src.rev}/CHANGELOG.md"; license = licenses.mit; maintainers = with maintainers; [ azahi ]; + platforms = platforms.unix; }; } diff --git a/pkgs/development/libraries/intel-gmmlib/default.nix b/pkgs/development/libraries/intel-gmmlib/default.nix index 4cd31f74058b8..58eba3ddc6d9b 100644 --- a/pkgs/development/libraries/intel-gmmlib/default.nix +++ b/pkgs/development/libraries/intel-gmmlib/default.nix @@ -9,13 +9,13 @@ stdenv.mkDerivation rec { pname = "intel-gmmlib"; - version = "22.3.16"; + version = "22.3.17"; src = fetchFromGitHub { owner = "intel"; repo = "gmmlib"; rev = "intel-gmmlib-${version}"; - sha256 = "sha256-6cN7qnFpVe362u4o0bZMKlUq1/eCpPZF0nBgon9Eav4="; + sha256 = "sha256-9utlENByIQSayKTdSJapLBWMI2gFpOReNZe7bpbEoj8="; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/libraries/isa-l/default.nix b/pkgs/development/libraries/isa-l/default.nix index a8b0afa41d219..d81f1120742ae 100644 --- a/pkgs/development/libraries/isa-l/default.nix +++ b/pkgs/development/libraries/isa-l/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "isa-l"; - version = "2.30.0"; + version = "2.31.0"; src = fetchFromGitHub { owner = "intel"; repo = "isa-l"; rev = "v${version}"; - sha256 = "sha256-AAuSdDQfDW4QFRu0jHwCZ+ZCSjoVqlQiSW1OOFye1Rs="; + sha256 = "sha256-xBBtpjtWyba0DogdLobtuWmiiAHTXMK4oRnjYuTUCNk="; }; nativeBuildInputs = [ nasm autoreconfHook ]; diff --git a/pkgs/development/libraries/itk/generic.nix b/pkgs/development/libraries/itk/generic.nix index e2db993707e21..652fce4a67978 100644 --- a/pkgs/development/libraries/itk/generic.nix +++ b/pkgs/development/libraries/itk/generic.nix @@ -1,6 +1,6 @@ { version, rev, sourceSha256 }: -{ lib, stdenv, fetchFromGitHub, cmake +{ lib, stdenv, fetchFromGitHub, fetchpatch, cmake , expat, fftw, gdcm, hdf5-cpp, libjpeg, libminc, libtiff, libpng , libX11, libuuid, xz, vtk, zlib, Cocoa }: @@ -38,6 +38,14 @@ stdenv.mkDerivation { sha256 = sourceSha256; }; + patches = [ + (fetchpatch { + name = "fix-gcc13-build"; + url = "https://github.com/InsightSoftwareConsortium/ITK/commit/9a719a0d2f5f489eeb9351b0ef913c3693147a4f.patch"; + hash = "sha256-dDyqYOzo91afR8W7k2N64X6l7t6Ws1C9iuRkWHUe0fg="; + }) + ]; + postPatch = '' substituteInPlace CMake/ITKSetStandardCompilerFlags.cmake \ --replace "-march=corei7" "" \ diff --git a/pkgs/development/libraries/jellyfin-ffmpeg/default.nix b/pkgs/development/libraries/jellyfin-ffmpeg/default.nix index 7109a5d6dfd11..5c015910eab73 100644 --- a/pkgs/development/libraries/jellyfin-ffmpeg/default.nix +++ b/pkgs/development/libraries/jellyfin-ffmpeg/default.nix @@ -6,15 +6,18 @@ ffmpeg_6-full.overrideAttrs (old: rec { pname = "jellyfin-ffmpeg"; - version = "6.0.1-1"; + version = "6.0.1-2"; src = fetchFromGitHub { owner = "jellyfin"; repo = "jellyfin-ffmpeg"; rev = "v${version}"; - hash = "sha256-LMwGxx++z6TpZLnpeRGraid4653Mp8T4pY5EP4Z7GXY="; + hash = "sha256-wc9OGwjcRDTDxlHYVTlbLe1B/F11z0Xcz6WRrO42zn4="; }; + # Clobber upstream patches as they don't apply to the Jellyfin fork + patches = []; + buildInputs = old.buildInputs ++ [ chromaprint ]; configureFlags = old.configureFlags ++ [ diff --git a/pkgs/development/libraries/kde-frameworks/fetch.sh b/pkgs/development/libraries/kde-frameworks/fetch.sh index 590818546a4bf..a6797786ee539 100644 --- a/pkgs/development/libraries/kde-frameworks/fetch.sh +++ b/pkgs/development/libraries/kde-frameworks/fetch.sh @@ -1 +1 @@ -WGET_ARGS=( https://download.kde.org/stable/frameworks/5.113/ -A '*.tar.xz' ) +WGET_ARGS=( https://download.kde.org/stable/frameworks/5.114/ -A '*.tar.xz' ) diff --git a/pkgs/development/libraries/kde-frameworks/srcs.nix b/pkgs/development/libraries/kde-frameworks/srcs.nix index 06b5e6b04cfa9..d51c74cc4e64f 100644 --- a/pkgs/development/libraries/kde-frameworks/srcs.nix +++ b/pkgs/development/libraries/kde-frameworks/srcs.nix @@ -4,667 +4,667 @@ { attica = { - version = "5.113.0"; + version = "5.114.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.113/attica-5.113.0.tar.xz"; - sha256 = "0p6n2jvky5x9gpwmp31mdxf0bzywaljgnkszgbklyc35xk9i6j14"; - name = "attica-5.113.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.114/attica-5.114.0.tar.xz"; + sha256 = "0gkdsm1vyyyxxyl4rni9s2bdz5w6zphzjl58fddjl899da06hqfq"; + name = "attica-5.114.0.tar.xz"; }; }; baloo = { - version = "5.113.0"; + version = "5.114.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.113/baloo-5.113.0.tar.xz"; - sha256 = "1jv7202dj2w0vcv49bgp0iv1sfy3kdqr974rcr77pcfzhhda9bix"; - name = "baloo-5.113.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.114/baloo-5.114.0.tar.xz"; + sha256 = "19sib1y0m5h2gnnpr9rfk810p6pdfm4zzxlm0a44r7910llp8i50"; + name = "baloo-5.114.0.tar.xz"; }; }; bluez-qt = { - version = "5.113.0"; + version = "5.114.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.113/bluez-qt-5.113.0.tar.xz"; - sha256 = "1y6nkl9zc5298jc6klxz88h6srmma085w1q5l4jmjihgys2zkcx7"; - name = "bluez-qt-5.113.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.114/bluez-qt-5.114.0.tar.xz"; + sha256 = "1ni50jwnb5ww8mkql0p3q8660c0srj8p0ik27lvxakwdq4wf6l9s"; + name = "bluez-qt-5.114.0.tar.xz"; }; }; breeze-icons = { - version = "5.113.0"; + version = "5.114.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.113/breeze-icons-5.113.0.tar.xz"; - sha256 = "0kb3wchx84dpi77zsi1b9pzlkhg3sjagxcsf1pdappagq3xn1p48"; - name = "breeze-icons-5.113.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.114/breeze-icons-5.114.0.tar.xz"; + sha256 = "0z5cpv10jyjdwjfkm7nj6hyp4vj29apm476hvbpb4gan27jyb91y"; + name = "breeze-icons-5.114.0.tar.xz"; }; }; extra-cmake-modules = { - version = "5.113.0"; + version = "5.114.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.113/extra-cmake-modules-5.113.0.tar.xz"; - sha256 = "1i1vpf9860cwrq5b01yrgf94hmzk9dx637j638shgjmyxr058pi6"; - name = "extra-cmake-modules-5.113.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.114/extra-cmake-modules-5.114.0.tar.xz"; + sha256 = "0z4nqravsfzlsgvkg5rha2d0qxfr3pfncw7z2fxzzqvzj7mfk6im"; + name = "extra-cmake-modules-5.114.0.tar.xz"; }; }; frameworkintegration = { - version = "5.113.0"; 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}; }; kwidgetsaddons = { - version = "5.113.0"; + version = "5.114.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.113/kwidgetsaddons-5.113.0.tar.xz"; - sha256 = "01rabfl2v5l9r3fgwgy75krib1486mdc4k3kfi035s6dvg8iy015"; - name = "kwidgetsaddons-5.113.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.114/kwidgetsaddons-5.114.0.tar.xz"; + sha256 = "1cc8lsk9v0cp2wiy1q26mlkf8np0yj01sq8a7w13ga5s6hv4sh2n"; + name = "kwidgetsaddons-5.114.0.tar.xz"; }; }; kwindowsystem = { - version = "5.113.0"; + version = "5.114.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.113/kwindowsystem-5.113.0.tar.xz"; - sha256 = "1hzavawsl14rsl9qb874zahvsvkrbcin7fg1xn1d7ssypphlis51"; - name = "kwindowsystem-5.113.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.114/kwindowsystem-5.114.0.tar.xz"; + sha256 = "03xbsf1pmswd2kpn3pdszp4vndclsh7j02fp22npxaxllmfr4va9"; + name = "kwindowsystem-5.114.0.tar.xz"; }; }; kxmlgui = { - version = "5.113.0"; + version = "5.114.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.113/kxmlgui-5.113.0.tar.xz"; - sha256 = "022l557z9jgrz2hj8hh9z7cjkvfhl5rdp81jhk2gd3wzmyf5zzmq"; - name = "kxmlgui-5.113.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.114/kxmlgui-5.114.0.tar.xz"; + sha256 = "0gvjf32ssc0r0bdpb1912ldsr5rjls8vrscwy5gm9g5gw504hmmr"; + name = "kxmlgui-5.114.0.tar.xz"; }; }; kxmlrpcclient = { - version = "5.113.0"; + version = "5.114.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.113/portingAids/kxmlrpcclient-5.113.0.tar.xz"; - sha256 = "141vlxxnyll5q0wg2va5prg0wf0hpymlzfkg37h1ngjwjs2x2yc1"; - name = "kxmlrpcclient-5.113.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.114/portingAids/kxmlrpcclient-5.114.0.tar.xz"; + sha256 = "1fgjai3vj3yk67ynhd7blilyrdhdn5nvma3v3j1sbdg98pr7qzar"; + name = "kxmlrpcclient-5.114.0.tar.xz"; }; }; modemmanager-qt = { - version = "5.113.0"; + version = "5.114.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.113/modemmanager-qt-5.113.0.tar.xz"; - sha256 = "069irg7ckws06qzq5mwkxvzx4r2xqwagwif6dq284hjihrz38l8b"; - name = "modemmanager-qt-5.113.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.114/modemmanager-qt-5.114.0.tar.xz"; + sha256 = "16jqhmcpsffl9a7c0bb4hwjy3bw5rakdsnc5n6y8djc6237jl9pi"; + name = "modemmanager-qt-5.114.0.tar.xz"; }; }; networkmanager-qt = { - version = "5.113.0"; + version = "5.114.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.113/networkmanager-qt-5.113.0.tar.xz"; - sha256 = "03wdbw6dr9a49qcs1j2lm9q894rvdl8xqjpwm3yrrjb866yyhcg1"; - name = "networkmanager-qt-5.113.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.114/networkmanager-qt-5.114.0.tar.xz"; + sha256 = "10anjsnrzawrfjlznjvvl2sbxrajl2ddnq2kgl314b5dk7z3yk4n"; + name = "networkmanager-qt-5.114.0.tar.xz"; }; }; oxygen-icons = { - version = "5.113.0"; + version = "5.114.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.113/oxygen-icons-5.113.0.tar.xz"; - sha256 = "0grdn0gz59lfp4n5mmlan71x3iwgm87dnhk8mla02dn7hv0fl0xx"; - name = "oxygen-icons-5.113.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.114/oxygen-icons-5.114.0.tar.xz"; + sha256 = "0f6hv5g8y2ggagrq9x9b78bqxqg6bqcpm1xxhf69ybgjikrqdf2r"; + name = "oxygen-icons-5.114.0.tar.xz"; }; }; plasma-framework = { - version = "5.113.0"; + version = "5.114.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.113/plasma-framework-5.113.0.tar.xz"; - sha256 = "0iijawnh9ri1n6qgdrraf3lq5sy7z0jy5ihmfzk22pn10ba992ky"; - name = "plasma-framework-5.113.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.114/plasma-framework-5.114.0.tar.xz"; + sha256 = "058hl76q35bw3rzmv348azk1lmhkpgmfrxr3jd9s1hphijr8sgcx"; + name = "plasma-framework-5.114.0.tar.xz"; }; }; prison = { - version = "5.113.0"; + version = "5.114.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.113/prison-5.113.0.tar.xz"; - sha256 = "18y4gxj5zml59a8i7gzr5cbbzi5wyknbva2ihfdpqf85vw3x2wdp"; - name = "prison-5.113.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.114/prison-5.114.0.tar.xz"; + sha256 = "1wbr1lryxmrx65ilq1bhqsdhhikrih977nhpb02fq0cqnvv7v9i7"; + name = "prison-5.114.0.tar.xz"; }; }; purpose = { - version = "5.113.0"; + version = "5.114.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.113/purpose-5.113.0.tar.xz"; - sha256 = "0p5zcvrkaw71w8795x2a4lx3z977j6jcnwbi9wi1956gcx4avhhf"; - name = "purpose-5.113.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.114/purpose-5.114.0.tar.xz"; + sha256 = "1lj67f0x4gvbh9by3c3crbbwwnx7b9ifjna9ggziya4m6zj0m4z1"; + name = "purpose-5.114.0.tar.xz"; }; }; qqc2-desktop-style = { - version = "5.113.0"; + version = "5.114.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.113/qqc2-desktop-style-5.113.0.tar.xz"; - sha256 = "0sk0sk7cq511m0rjmgsg1z8s4sy064qmbql472ljyblafm71wj6p"; - name = "qqc2-desktop-style-5.113.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.114/qqc2-desktop-style-5.114.0.tar.xz"; + sha256 = "1y5g91vybjvhwmzpfwrc70q5j7jxf5b972f9fh2vzb930jir6c8g"; + name = "qqc2-desktop-style-5.114.0.tar.xz"; }; }; solid = { - version = "5.113.0"; + version = "5.114.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.113/solid-5.113.0.tar.xz"; - sha256 = "0vhhkn15axfvlwrf9np91hnipw1lb2x9zh0ajpngvxzcnj6kvn7r"; - name = "solid-5.113.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.114/solid-5.114.0.tar.xz"; + sha256 = "1slxlj5jhp8g745l328932934633nl81sq3n8fd73h655hymsk4s"; + name = "solid-5.114.0.tar.xz"; }; }; sonnet = { - version = "5.113.0"; + version = "5.114.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.113/sonnet-5.113.0.tar.xz"; - sha256 = "17v3a2j0vhx7mzv0wfgqky248m57gasyv1xbjqpzjdr3x2f1zhy6"; - name = "sonnet-5.113.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.114/sonnet-5.114.0.tar.xz"; + sha256 = "0zxi96i3gfpx759qc1nyz7jqlswg5ivgr1w9gbbsm1x5fi9ikadx"; + name = "sonnet-5.114.0.tar.xz"; }; }; syndication = { - version = "5.113.0"; + version = "5.114.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.113/syndication-5.113.0.tar.xz"; - sha256 = "1nzcfk4qsjvrgci3vk78jjpbig61pm0y73h3qs83yld1zw3az3jx"; - name = "syndication-5.113.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.114/syndication-5.114.0.tar.xz"; + sha256 = "13rjb1zm9yd8vbm9h7avqih5v0rr2srqwglm29l7mcnankqlh4n7"; + name = "syndication-5.114.0.tar.xz"; }; }; syntax-highlighting = { - version = "5.113.0"; + version = "5.114.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.113/syntax-highlighting-5.113.0.tar.xz"; - sha256 = "1blifnqikvrlkcskwjdk54mvh8yd4r0vzz282mi64w7alimlilgl"; - name = "syntax-highlighting-5.113.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.114/syntax-highlighting-5.114.0.tar.xz"; + sha256 = "1skblg2m0sar63qrgkjsg0w9scixggm5qj7lp4gzjn4hwq6m3n63"; + name = "syntax-highlighting-5.114.0.tar.xz"; }; }; threadweaver = { - version = "5.113.0"; + version = "5.114.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.113/threadweaver-5.113.0.tar.xz"; - sha256 = "1x7i7mdg5v22y04m720k9fqj7xagm8qnlssb1xjs9nj0aqif8jgp"; - name = "threadweaver-5.113.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.114/threadweaver-5.114.0.tar.xz"; + sha256 = "1y07g58w6z3i11y3djg3aaxanhp9hzaciq61l4dn1gqwghn09xgh"; + name = "threadweaver-5.114.0.tar.xz"; }; }; } diff --git a/pkgs/development/libraries/kdsoap/default.nix b/pkgs/development/libraries/kdsoap/default.nix index c2f94b8e69276..5dc6b5f962e1f 100644 --- a/pkgs/development/libraries/kdsoap/default.nix +++ b/pkgs/development/libraries/kdsoap/default.nix @@ -11,11 +11,11 @@ let cmakeName = if isQt6 then "KDSoap-qt6" else "KDSoap"; in stdenv.mkDerivation rec { pname = "kdsoap"; - version = "2.1.1"; + version = "2.2.0"; src = fetchurl { url = "https://github.com/KDAB/KDSoap/releases/download/kdsoap-${version}/kdsoap-${version}.tar.gz"; - sha256 = "sha256-rtV/ayAN33YvXSiY9+kijdBwCIHESRrv5ABvf6X1xic="; + sha256 = "sha256-2e8RlIRCGXyfpEvW+63IQrcoCmDfxAV3r2b97WN681Y="; }; outputs = [ "out" "dev" ]; @@ -28,10 +28,8 @@ in stdenv.mkDerivation rec { postInstall = '' moveToOutput bin/kdwsdl2cpp* "$dev" - sed -i "$out/lib/cmake/${cmakeName}/KDSoapTargets.cmake" \ - -e "/^ INTERFACE_INCLUDE_DIRECTORIES/ c INTERFACE_INCLUDE_DIRECTORIES \"$dev/include\"" - sed -i "$out/lib/cmake/${cmakeName}/KDSoapTargets-release.cmake" \ - -e "s@$out/bin@$dev/bin@" + substituteInPlace "$out/lib/cmake/${cmakeName}/KDSoapTargets-release.cmake" \ + --replace $out/bin $dev/bin ''; meta = with lib; { diff --git a/pkgs/development/libraries/kerberos/heimdal-make-missing-headers.patch b/pkgs/development/libraries/kerberos/heimdal-make-missing-headers.patch deleted file mode 100644 index a0fa625538b74..0000000000000 --- a/pkgs/development/libraries/kerberos/heimdal-make-missing-headers.patch +++ /dev/null @@ -1,10 +0,0 @@ ---- a/lib/hx509/Makefile.am 2018-03-21 15:41:38.622968809 +0100 -+++ b/lib/hx509/Makefile.am 2018-03-21 15:41:32.655162197 +0100 -@@ -9,6 +9,8 @@ - sel-gram.h \ - $(gen_files_ocsp:.x=.c) \ - $(gen_files_pkcs10:.x=.c) \ -+ ocsp_asn1.h \ -+ pkcs10_asn1.h \ - hx509_err.c \ - hx509_err.h diff --git a/pkgs/development/libraries/kerberos/heimdal.nix b/pkgs/development/libraries/kerberos/heimdal.nix index e4a61a3c0731c..ff211b6b9c34a 100644 --- a/pkgs/development/libraries/kerberos/heimdal.nix +++ b/pkgs/development/libraries/kerberos/heimdal.nix @@ -1,63 +1,138 @@ -{ lib, stdenv, fetchFromGitHub, autoreconfHook, pkg-config, python3, perl, bison, flex -, texinfo, perlPackages -, openldap, libcap_ng, sqlite, openssl, db, libedit, pam -, CoreFoundation, Security, SystemConfiguration +{ lib +, stdenv +, fetchFromGitHub +, autoreconfHook +, pkg-config +, python3 +, perl +, bison +, flex +, texinfo +, perlPackages + +, openldap +, libcap_ng +, sqlite +, openssl +, db +, libedit +, pam +, krb5 +, libmicrohttpd +, cjson + +, CoreFoundation +, Security +, SystemConfiguration + +, curl +, jdk +, unzip +, which + +, nixosTests + +, withCJSON ? true +, withCapNG ? stdenv.isLinux +# libmicrohttpd should theoretically work for darwin as well, but something is broken. +# It affects tests check-bx509d and check-httpkadmind. +, withMicroHTTPD ? stdenv.isLinux +, withOpenLDAP ? true +, withOpenLDAPAsHDBModule ? false +, withOpenSSL ? true +, withSQLite3 ? true }: -stdenv.mkDerivation rec { +assert lib.assertMsg (withOpenLDAPAsHDBModule -> withOpenLDAP) '' + OpenLDAP needs to be enabled in order to build the OpenLDAP HDB Module. +''; + +stdenv.mkDerivation { pname = "heimdal"; - version = "7.8.0"; + version = "7.8.0-unstable-2023-11-29"; src = fetchFromGitHub { owner = "heimdal"; repo = "heimdal"; - rev = "heimdal-${version}"; - sha256 = "sha256-iXOaar1S3y0xHdL0S+vS0uxoFQjy43kABxqE+KEhxjU="; + rev = "3253c49544eacb33d5ad2f6f919b0696e5aab794"; + hash = "sha256-uljzQBzXrZCZjcIWfioqHN8YsbUUNy14Vo+A3vZIXzM="; }; outputs = [ "out" "dev" "man" "info" ]; - patches = [ ./heimdal-make-missing-headers.patch ]; - - nativeBuildInputs = [ autoreconfHook pkg-config python3 perl bison flex texinfo ] - ++ (with perlPackages; [ JSON ]); - buildInputs = lib.optionals (stdenv.isLinux) [ libcap_ng ] - ++ [ db sqlite openssl libedit openldap pam] - ++ lib.optionals (stdenv.isDarwin) [ CoreFoundation Security SystemConfiguration ]; + nativeBuildInputs = [ + autoreconfHook + pkg-config + python3 + perl + bison + flex + texinfo + ] + ++ (with perlPackages; [ JSON ]); + + buildInputs = [ db libedit pam ] + ++ lib.optionals (stdenv.isDarwin) [ CoreFoundation Security SystemConfiguration ] + ++ lib.optionals (withCJSON) [ cjson ] + ++ lib.optionals (withCapNG) [ libcap_ng ] + ++ lib.optionals (withMicroHTTPD) [ libmicrohttpd ] + ++ lib.optionals (withOpenLDAP) [ openldap ] + ++ lib.optionals (withOpenSSL) [ openssl ] + ++ lib.optionals (withSQLite3) [ sqlite ]; + + doCheck = true; + nativeCheckInputs = [ + curl + jdk + unzip + which + ]; - ## ugly, X should be made an option configureFlags = [ - "--sysconfdir=/etc" - "--localstatedir=/var" - "--infodir=$info/share/info" - "--enable-hdb-openldap-module" - "--with-sqlite3=${sqlite.dev}" - - # ugly, --with-libedit is not enought, it fall back to bundled libedit "--with-libedit-include=${libedit.dev}/include" "--with-libedit-lib=${libedit}/lib" - "--with-openssl=${openssl.dev}" - "--without-x" - "--with-berkeley-db" "--with-berkeley-db-include=${db.dev}/include" - "--with-openldap=${openldap.dev}" - ] ++ lib.optionals (stdenv.isLinux) [ + "--with-berkeley-db" + + "--without-x" + "--disable-afs-string-to-key" + ] ++ lib.optionals (withCapNG) [ "--with-capng" + ] ++ lib.optionals (withCJSON) [ + "--with-cjson=${cjson}" + ] ++ lib.optionals (withOpenLDAP) [ + "--with-openldap=${openldap.dev}" + ] ++ lib.optionals (withOpenLDAPAsHDBModule) [ + "--enable-hdb-openldap-module" + ] ++ lib.optionals (withSQLite3) [ + "--with-sqlite3=${sqlite.dev}" ]; - postUnpack = '' - sed -i '/^DEFAULT_INCLUDES/ s,$, -I..,' source/cf/Makefile.am.common - sed -i -e 's/date/date --date="@$SOURCE_DATE_EPOCH"/' source/configure.ac + # (check-ldap) slapd resides within ${openldap}/libexec, + # which is not part of $PATH by default. + # (check-ldap) prepending ${openldap}/bin to the path to avoid + # using the default installation of openldap on unsandboxed darwin systems, + # which does not support the new mdb backend at the moment (2024-01-13). + # (check-ldap) the bdb backend got deprecated in favour of mdb in openldap 2.5.0, + # but the heimdal tests still seem to expect bdb as the openldap backend. + # This might be fixed upstream in a future update. + patchPhase = '' + runHook prePatch + + substituteInPlace tests/ldap/slapd-init.in \ + --replace 'SCHEMA_PATHS="' 'SCHEMA_PATHS="${openldap}/etc/schema ' + substituteInPlace tests/ldap/check-ldap.in \ + --replace 'PATH=' 'PATH=${openldap}/libexec:${openldap}/bin:' + substituteInPlace tests/ldap/slapd.conf \ + --replace 'database bdb' 'database mdb' + + runHook postPatch ''; - preConfigure = '' - configureFlagsArray+=( - "--bindir=$out/bin" - "--sbindir=$out/sbin" - "--libexecdir=$out/libexec/heimdal" - "--mandir=$man/share/man" - "--infodir=$man/share/info" - "--includedir=$dev/include") + # (test_cc) heimdal uses librokens implementation of `secure_getenv` on darwin, + # which expects either USER or LOGNAME to be set. + preCheck = lib.optionalString (stdenv.isDarwin) '' + export USER=nix-builder ''; # We need to build hcrypt for applications like samba @@ -71,15 +146,12 @@ stdenv.mkDerivation rec { (cd include/hcrypto; make -j $NIX_BUILD_CORES install) (cd lib/hcrypto; make -j $NIX_BUILD_CORES install) - # Do we need it? - rm $out/bin/su - mkdir -p $dev/bin mv $out/bin/krb5-config $dev/bin/ # asn1 compilers, move them to $dev - mv $out/libexec/heimdal/heimdal/* $dev/bin - rmdir $out/libexec/heimdal/heimdal + mv $out/libexec/heimdal/* $dev/bin + rmdir $out/libexec/heimdal # compile_et is needed for cross-compiling this package and samba mv lib/com_err/.libs/compile_et $dev/bin @@ -90,11 +162,17 @@ stdenv.mkDerivation rec { # hx_locl.h:67:25: fatal error: pkcs10_asn1.h: No such file or directory #enableParallelBuilding = true; + passthru = { + implementation = "heimdal"; + tests.nixos = nixosTests.kerberos.heimdal; + }; + meta = with lib; { + homepage = "https://www.heimdal.software"; + changelog = "https://github.com/heimdal/heimdal/releases"; description = "An implementation of Kerberos 5 (and some more stuff)"; license = licenses.bsd3; platforms = platforms.unix; + maintainers = with maintainers; [ h7x4 ]; }; - - passthru.implementation = "heimdal"; } diff --git a/pkgs/development/libraries/khronos-ocl-icd-loader/default.nix b/pkgs/development/libraries/khronos-ocl-icd-loader/default.nix index 37c007db20b4c..57fe21a27c7b5 100644 --- a/pkgs/development/libraries/khronos-ocl-icd-loader/default.nix +++ b/pkgs/development/libraries/khronos-ocl-icd-loader/default.nix @@ -1,26 +1,28 @@ { lib, stdenv, fetchFromGitHub, opencl-headers, cmake, withTracing ? false }: stdenv.mkDerivation rec { - pname = "khronos-ocl-icd-loader"; - version = "2022.01.04"; + pname = "opencl-icd-loader"; + version = "2023.12.14"; src = fetchFromGitHub { owner = "KhronosGroup"; repo = "OpenCL-ICD-Loader"; rev = "v${version}"; - sha256 = "sha256-T2tBoN0yv41W+UksFABVjsetdkXlnEFUINfxumGgC04="; + hash = "sha256-/4ixQAwJpygdg+qtR1ccBlz8hmtYYxRgUV5dlJabsg8="; }; - patches = lib.optional withTracing ./tracing.patch; - nativeBuildInputs = [ cmake ]; buildInputs = [ opencl-headers ]; + cmakeFlags = [ + (lib.cmakeBool "OCL_ICD_ENABLE_TRACE" withTracing) + ]; + meta = with lib; { description = "Official Khronos OpenCL ICD Loader"; homepage = "https://github.com/KhronosGroup/OpenCL-ICD-Loader"; license = licenses.asl20; - platforms = platforms.linux; maintainers = with maintainers; [ davidtwco ]; + platforms = platforms.unix; }; } diff --git a/pkgs/development/libraries/khronos-ocl-icd-loader/tracing.patch b/pkgs/development/libraries/khronos-ocl-icd-loader/tracing.patch deleted file mode 100644 index cef22457e5a1e..0000000000000 --- a/pkgs/development/libraries/khronos-ocl-icd-loader/tracing.patch +++ /dev/null @@ -1,13 +0,0 @@ -diff --git a/loader/icd.h b/loader/icd.h -index 34751e9..01a33fd 100644 ---- a/loader/icd.h -+++ b/loader/icd.h -@@ -123,7 +123,7 @@ void khrIcdContextPropertiesGetPlatform( - cl_platform_id *outPlatform); - - // internal tracing macros --#if 0 -+#if 1 - #include <stdio.h> - #define KHR_ICD_TRACE(...) \ - do \ diff --git a/pkgs/development/libraries/leptonica/default.nix b/pkgs/development/libraries/leptonica/default.nix index 08921c2ca3c07..12cd3f074fcbc 100644 --- a/pkgs/development/libraries/leptonica/default.nix +++ b/pkgs/development/libraries/leptonica/default.nix @@ -4,11 +4,11 @@ stdenv.mkDerivation rec { pname = "leptonica"; - version = "1.84.0"; + version = "1.84.1"; src = fetchurl { url = "https://github.com/DanBloomberg/${pname}/releases/download/${version}/${pname}-${version}.tar.gz"; - hash = "sha256-QqApMSod8M1WQBlal5voG/ZiMOFTFkysRWR4RU5yBtU="; + hash = "sha256-Kz4SVLHMo4HnfIGbWcqZd0/0NTAgm5rrUR4dRliKZPY="; }; nativeBuildInputs = [ autoreconfHook pkg-config ]; diff --git a/pkgs/development/libraries/libaal/default.nix b/pkgs/development/libraries/libaal/default.nix index e3c960681c5f4..d5b0b95f95992 100644 --- a/pkgs/development/libraries/libaal/default.nix +++ b/pkgs/development/libraries/libaal/default.nix @@ -1,16 +1,14 @@ { lib, stdenv, fetchurl }: stdenv.mkDerivation rec { - version = "1.0.6"; + version = "1.0.7"; pname = "libaal"; src = fetchurl { url = "mirror://sourceforge/reiser4/${pname}-${version}.tar.gz"; - sha256 = "176f2sns6iyxv3h9zyirdinjwi05gdak48zqarhib2s38rvm98di"; + sha256 = "sha256-fIVohp2PVCaNaQRVJ4zfW8mukiiqM3BgF8Vwu9qrmJE="; }; - patches = [ ./libaal-1.0.6-glibc-2.26.patch ]; - preInstall = '' substituteInPlace Makefile --replace ./run-ldconfig true ''; @@ -21,7 +19,7 @@ stdenv.mkDerivation rec { homepage = "http://www.namesys.com/"; description = "Support library for Reiser4"; license = lib.licenses.gpl2; - maintainers = with lib.maintainers; [ ]; + maintainers = with lib.maintainers; [ mglolenstine ]; platforms = with lib.platforms; linux; }; } diff --git a/pkgs/development/libraries/libaal/libaal-1.0.6-glibc-2.26.patch b/pkgs/development/libraries/libaal/libaal-1.0.6-glibc-2.26.patch deleted file mode 100644 index 6d49682f03ae8..0000000000000 --- a/pkgs/development/libraries/libaal/libaal-1.0.6-glibc-2.26.patch +++ /dev/null @@ -1,89 +0,0 @@ -Date: 2017-09-02 13:03:15.353403096 +0200 -From: Jan Engelhardt <jengelh@inai.de> - -Stop redefining libc definitions that cause build failures under glibc-2.26. - -[ 46s] In file included from /usr/include/sys/types.h:156:0, -[ 46s] from /usr/include/stdlib.h:279, -[ 46s] from malloc.c:15: -[ 46s] /usr/include/bits/stdint-intn.h:27:19: error: conflicting types for 'int64_t' -[ 46s] typedef __int64_t int64_t; -[ 46s] ^~~~~~~ -[ 46s] In file included from ../include/aal/libaal.h:17:0, -[ 46s] from malloc.c:6: -[ 46s] ../include/aal/types.h:35:33: note: previous declaration of 'int64_t' was here -[ 46s] typedef long long int int64_t; - - ---- - include/aal/types.h | 48 ++---------------------------------------------- - 1 file changed, 2 insertions(+), 46 deletions(-) - -Index: libaal-1.0.6/include/aal/types.h -=================================================================== ---- libaal-1.0.6.orig/include/aal/types.h -+++ libaal-1.0.6/include/aal/types.h -@@ -26,24 +26,7 @@ - #undef ESTRUCT - #define ESTRUCT 50 - --#ifndef __int8_t_defined --#define __int8_t_defined --typedef signed char int8_t; --typedef short int int16_t; --typedef int int32_t; --__extension__ --typedef long long int int64_t; --#endif -- --typedef unsigned char uint8_t; --typedef unsigned short int uint16_t; --#ifndef __uint32_t_defined --#define __uint32_t_defined --typedef unsigned int uint32_t; --__extension__ --typedef unsigned long long int uint64_t; --#endif -- -+#include <stdint.h> - #define MAX_UINT8 ((uint8_t)~0) - #define MAX_UINT16 ((uint16_t)~0) - #define MAX_UINT32 ((uint32_t)~0) -@@ -53,36 +36,9 @@ typedef unsigned long long int uint64_t - because we don't want use gcc builtins in minimal mode for achive as small - binary size as possible. */ - --#ifndef ENABLE_MINIMAL - # include <stdarg.h> --#else --#ifndef _VA_LIST_ --#define _VA_LIST_ --typedef char *va_list; --#endif --#undef va_arg --#undef va_end --#undef va_start -- --#define va_end(ap) \ -- do {} while(0); -- --#define va_start(ap, p) \ -- (ap = (char *)(&(p)+1)) -- --#define va_arg(ap, type) \ -- ((type *)(ap += sizeof(type)))[-1] --#endif -- --/* As libaal may be used without any standard headers, we need to declare NULL -- macro here in order to avoid compilation errors. */ --#undef NULL - --#if defined(__cplusplus) --# define NULL 0 --#else --# define NULL ((void *)0) --#endif -+#include <stdio.h> - - /* Simple type for direction denoting */ - enum aal_dir { diff --git a/pkgs/development/libraries/libayatana-common/default.nix b/pkgs/development/libraries/libayatana-common/default.nix index 216e05f6709c1..439cc45031f95 100644 --- a/pkgs/development/libraries/libayatana-common/default.nix +++ b/pkgs/development/libraries/libayatana-common/default.nix @@ -4,11 +4,11 @@ , gitUpdater , testers , cmake -, cmake-extras , glib , gobject-introspection , gtest , intltool +, lomiri , pkg-config , systemd , vala @@ -28,7 +28,7 @@ stdenv.mkDerivation (finalAttrs: { postPatch = '' # Queries via pkg_get_variable, can't override prefix substituteInPlace data/CMakeLists.txt \ - --replace 'DESTINATION "''${SYSTEMD_USER_UNIT_DIR}"' 'DESTINATION "${placeholder "out"}/lib/systemd/user"' + --replace 'pkg_get_variable(SYSTEMD_USER_UNIT_DIR systemd systemd_user_unit_dir)' 'set(SYSTEMD_USER_UNIT_DIR ''${CMAKE_INSTALL_PREFIX}/lib/systemd/user)' ''; strictDeps = true; @@ -42,8 +42,9 @@ stdenv.mkDerivation (finalAttrs: { ]; buildInputs = [ - cmake-extras + lomiri.cmake-extras glib + lomiri.lomiri-url-dispatcher systemd ]; @@ -53,7 +54,7 @@ stdenv.mkDerivation (finalAttrs: { cmakeFlags = [ "-DENABLE_TESTS=${lib.boolToString finalAttrs.finalPackage.doCheck}" - "-DENABLE_LOMIRI_FEATURES=OFF" + "-DENABLE_LOMIRI_FEATURES=ON" "-DGSETTINGS_LOCALINSTALL=ON" "-DGSETTINGS_COMPILE=ON" ]; diff --git a/pkgs/development/libraries/libbacktrace/default.nix b/pkgs/development/libraries/libbacktrace/default.nix index b188a9cfc38c8..288185f92281d 100644 --- a/pkgs/development/libraries/libbacktrace/default.nix +++ b/pkgs/development/libraries/libbacktrace/default.nix @@ -9,13 +9,13 @@ stdenv.mkDerivation { pname = "libbacktrace"; - version = "unstable-2022-12-16"; + version = "unstable-2023-11-30"; src = fetchFromGitHub { owner = "ianlancetaylor"; repo = "libbacktrace"; - rev = "da7eff2f37e38136c5a0c8922957b9dfab5483ef"; - sha256 = "ADp8n1kUf8OysFY/Jv1ytxKjqgz1Nu2VRcFGlt1k/HM="; + rev = "14818b7783eeb9a56c3f0fca78cefd3143f8c5f6"; + sha256 = "DQZQsqzeQ/0v87bfqs6sXqS2M5Tunc1OydTWRSB3PCw="; }; patches = [ diff --git a/pkgs/development/libraries/libcamera/default.nix b/pkgs/development/libraries/libcamera/default.nix index 076eccb1c26ef..232fb29ecbe53 100644 --- a/pkgs/development/libraries/libcamera/default.nix +++ b/pkgs/development/libraries/libcamera/default.nix @@ -22,12 +22,12 @@ stdenv.mkDerivation rec { pname = "libcamera"; - version = "0.0.5"; + version = "0.1.0"; src = fetchgit { url = "https://git.libcamera.org/libcamera/libcamera.git"; rev = "v${version}"; - hash = "sha256-rd1YIEosg4+H/FJBYCoxdQlV9F0evU5fckHJrSdVPOE="; + hash = "sha256-icHZtv25QvJEv0DlELT3cDxho3Oz2BJAMNKr5W4bshk="; }; outputs = [ "out" "dev" "doc" ]; diff --git a/pkgs/development/libraries/libcint/default.nix b/pkgs/development/libraries/libcint/default.nix index e90078b0c8405..caa7e51336a4c 100644 --- a/pkgs/development/libraries/libcint/default.nix +++ b/pkgs/development/libraries/libcint/default.nix @@ -9,15 +9,19 @@ stdenv.mkDerivation rec { pname = "libcint"; - version = "5.4.0"; + version = "6.1.2"; src = fetchFromGitHub { owner = "sunqm"; repo = "libcint"; rev = "v${version}"; - hash = "sha256-U+ZlD/I7RHtdYNbFhAmeU4qREe45dYJDIAC3Bup2tr0="; + hash = "sha256-URJcC0ib87ejrTCglCjhC2tQHNc5TRvo4CQ52N58n+4="; }; + postPatch = '' + sed -i 's/libcint.so/libcint${stdenv.hostPlatform.extensions.sharedLibrary}/g' testsuite/*.py + ''; + nativeBuildInputs = [ cmake ]; buildInputs = [ blas ]; cmakeFlags = [ @@ -46,5 +50,6 @@ stdenv.mkDerivation rec { changelog = "https://github.com/sunqm/libcint/blob/master/ChangeLog"; license = licenses.bsd2; maintainers = with maintainers; [ drewrisinger ]; + platforms = platforms.unix; }; } diff --git a/pkgs/development/libraries/libdrm/default.nix b/pkgs/development/libraries/libdrm/default.nix index 5cb8f2cbad8e8..8d8a932f4994e 100644 --- a/pkgs/development/libraries/libdrm/default.nix +++ b/pkgs/development/libraries/libdrm/default.nix @@ -6,11 +6,11 @@ stdenv.mkDerivation rec { pname = "libdrm"; - version = "2.4.119"; + version = "2.4.120"; src = fetchurl { url = "https://dri.freedesktop.org/${pname}/${pname}-${version}.tar.xz"; - hash = "sha256-CknxLwm1tuaOqq/z8Cynz/mqkmk5shLTQxYdPorFYpE="; + hash = "sha256-O/VTY/dsclCUZEGrUdOmzArlGAVcD/AXMkq3bN77Mno="; }; outputs = [ "out" "dev" "bin" ]; diff --git a/pkgs/development/libraries/libdwarf/default.nix b/pkgs/development/libraries/libdwarf/default.nix index 0f96083100c23..006933a4de035 100644 --- a/pkgs/development/libraries/libdwarf/default.nix +++ b/pkgs/development/libraries/libdwarf/default.nix @@ -1,8 +1,12 @@ -{ callPackage, zlib }: +{ callPackage +, zlib +, zstd +}: + callPackage ./common.nix rec { - version = "0.4.2"; + version = "0.9.0"; url = "https://www.prevanders.net/libdwarf-${version}.tar.xz"; - hash = "sha512-bSo+vwEENi3Zzs7CcpNWhPl32xGYEO6g7siMn1agQvJgpPbtO7q96Fkv4W+Yy9gbSrKHgAUUDgXI9HXfY4DRwg=="; - buildInputs = [ zlib ]; + hash = "sha512-KC2Q38nacE62SkuhFB8q5mD+6xS78acjdzhmmOMSSSi0SmkU2OiOYUGrCINc5yOtCQqFOtV9vLQ527pXJV+1iQ=="; + buildInputs = [ zlib zstd ]; knownVulnerabilities = []; } diff --git a/pkgs/development/libraries/libedit/default.nix b/pkgs/development/libraries/libedit/default.nix index f0eb267b05b57..d8c7be41f4a10 100644 --- a/pkgs/development/libraries/libedit/default.nix +++ b/pkgs/development/libraries/libedit/default.nix @@ -21,9 +21,9 @@ stdenv.mkDerivation rec { # There is a DR to fix this issue with Clang which is not merged # yet. # https://reviews.llvm.org/D137043 - NIX_CFLAGS_COMPILE = lib.optional - (stdenv.targetPlatform.isMusl && stdenv.cc.isClang) - "-D__STDC_ISO_10646__=201103L"; + env.NIX_CFLAGS_COMPILE = + lib.optionalString (stdenv.targetPlatform.isMusl && stdenv.cc.isClang) + "-D__STDC_ISO_10646__=201103L"; patches = [ ./01-cygwin.patch ]; diff --git a/pkgs/development/libraries/libetpan/default.nix b/pkgs/development/libraries/libetpan/default.nix index 1f7f52c70ab56..767b53c9d277c 100644 --- a/pkgs/development/libraries/libetpan/default.nix +++ b/pkgs/development/libraries/libetpan/default.nix @@ -95,5 +95,6 @@ stdenv.mkDerivation rec { homepage = "https://www.etpan.org/libetpan.html"; license = licenses.bsd3; maintainers = with maintainers; [ oxzi ]; + platforms = platforms.unix; }; } diff --git a/pkgs/development/libraries/libewf-legacy/default.nix b/pkgs/development/libraries/libewf-legacy/default.nix new file mode 100644 index 0000000000000..4cfbceb0089ce --- /dev/null +++ b/pkgs/development/libraries/libewf-legacy/default.nix @@ -0,0 +1,32 @@ +{ lib +, fetchurl +, fetchpatch +, stdenv +, zlib +, openssl +, libuuid +, pkg-config +, bzip2 +}: + +stdenv.mkDerivation rec { + pname = "libewf-ewf"; + version = "20140814"; + + src = fetchurl { + url = "https://github.com/libyal/libewf-legacy/releases/download/${version}/libewf-${version}.tar.gz"; + hash = "sha256-OM3QXwnaIDeo66UNjzmu6to53SxgCMn/rE9VTPlX5BQ="; + }; + + nativeBuildInputs = [ pkg-config ]; + buildInputs = [ zlib openssl libuuid ] + ++ lib.optionals stdenv.isDarwin [ bzip2 ]; + + meta = { + description = "Legacy library for support of the Expert Witness Compression Format"; + homepage = "https://sourceforge.net/projects/libewf/"; + license = lib.licenses.lgpl3; + maintainers = with lib.maintainers; [ d3vil0p3r ]; + platforms = lib.platforms.unix; + }; +} diff --git a/pkgs/development/libraries/libfabric/default.nix b/pkgs/development/libraries/libfabric/default.nix index 34089dbdcaa8b..ab92befa9ed85 100644 --- a/pkgs/development/libraries/libfabric/default.nix +++ b/pkgs/development/libraries/libfabric/default.nix @@ -12,7 +12,7 @@ stdenv.mkDerivation rec { pname = "libfabric"; - version = "1.20.0"; + version = "1.20.1"; enableParallelBuilding = true; @@ -20,7 +20,7 @@ stdenv.mkDerivation rec { owner = "ofiwg"; repo = pname; rev = "v${version}"; - sha256 = "sha256-woRkm/5kLIv1ypSlCosP/ewYgnSXQJYzkuOqdHvEH8I="; + sha256 = "sha256-rQzsh3Q2xaGwmmsfvUmFE8WbAb1e2JEvunSoqZYRHvE="; }; outputs = [ "out" "dev" "man" ]; diff --git a/pkgs/development/libraries/libgig/default.nix b/pkgs/development/libraries/libgig/default.nix index 26e3b46d55104..48d45797096b8 100644 --- a/pkgs/development/libraries/libgig/default.nix +++ b/pkgs/development/libraries/libgig/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "libgig"; - version = "4.3.0"; + version = "4.4.0"; src = fetchurl { url = "https://download.linuxsampler.org/packages/${pname}-${version}.tar.bz2"; - sha256 = "sha256-oG0Jh4eAxsGd2NucM1RNU6kzV/niexSpg6qrpo//p5Q="; + sha256 = "sha256-ZwQMrK8da12lFz7UAY2i+eW3rzPFhngdUfeV3hW65iI="; }; nativeBuildInputs = [ autoconf automake libtool pkg-config ]; diff --git a/pkgs/development/libraries/libglibutil/default.nix b/pkgs/development/libraries/libglibutil/default.nix index 26d54d26d66a4..acd8b374b58b9 100644 --- a/pkgs/development/libraries/libglibutil/default.nix +++ b/pkgs/development/libraries/libglibutil/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "libglibutil"; - version = "1.0.75"; + version = "1.0.76"; src = fetchFromGitHub { owner = "sailfishos"; repo = pname; rev = version; - sha256 = "sha256-YHK5gRXBIhZJTY7F8b7QIUnftCIgOHwXVM3D35M3DC4="; + sha256 = "sha256-qp3zcaoLM6G3DZgb2Jic1OhHetraEmYRiGkbQlSBnjs="; }; outputs = [ "out" "dev" ]; diff --git a/pkgs/development/libraries/libhdhomerun/default.nix b/pkgs/development/libraries/libhdhomerun/default.nix index 96b8e3c02937a..558e6d6fa894e 100644 --- a/pkgs/development/libraries/libhdhomerun/default.nix +++ b/pkgs/development/libraries/libhdhomerun/default.nix @@ -6,34 +6,37 @@ stdenv.mkDerivation rec { pname = "libhdhomerun"; - version = "20220303"; + version = "20231214"; src = fetchurl { url = "https://download.silicondust.com/hdhomerun/libhdhomerun_${version}.tgz"; - sha256 = "sha256-HlT/78LUiTkRUB2jHmYrnQY+bBiv4stcZlMyUnelSpc="; + hash = "sha256-VSoQLoqiq8xBYJDewvb4DaWfl/kfV5aOnp17PcAF268="; }; - postPatch = lib.optionalString stdenv.isDarwin '' - substituteInPlace Makefile \ - --replace "-arch x86_64" "-arch ${stdenv.hostPlatform.darwinArch}" - ''; + patches = [ + ./nixos-darwin-no-fat-dylib.patch + ]; makeFlags = [ "CC=${stdenv.cc.targetPrefix}cc" ]; installPhase = '' + runHook preInstall + mkdir -p $out/{bin,lib,include/hdhomerun} install -Dm444 libhdhomerun${stdenv.hostPlatform.extensions.sharedLibrary} $out/lib install -Dm555 hdhomerun_config $out/bin cp *.h $out/include/hdhomerun + + runHook postInstall ''; meta = with lib; { description = "Implements the libhdhomerun protocol for use with Silicondust HDHomeRun TV tuners"; homepage = "https://www.silicondust.com/support/linux"; license = licenses.lgpl21Only; + maintainers = with maintainers; [ sielicki titanous ]; platforms = platforms.unix; - maintainers = [ maintainers.titanous ]; }; } diff --git a/pkgs/development/libraries/libhdhomerun/nixos-darwin-no-fat-dylib.patch b/pkgs/development/libraries/libhdhomerun/nixos-darwin-no-fat-dylib.patch new file mode 100644 index 0000000000000..99c389a19434f --- /dev/null +++ b/pkgs/development/libraries/libhdhomerun/nixos-darwin-no-fat-dylib.patch @@ -0,0 +1,52 @@ +From 6b9ed19d7874b88b7db5b740dac3dcd7dcda6c8c Mon Sep 17 00:00:00 2001 +From: Nicholas Sielicki <git@opensource.nslick.com> +Date: Sat, 25 Nov 2023 13:54:39 -0600 +Subject: [PATCH] nixos-darwin-no-fat-dylib + +Signed-off-by: Nicholas Sielicki <git@opensource.nslick.com> +--- + Makefile | 24 ++++-------------------- + 1 file changed, 4 insertions(+), 20 deletions(-) + +diff --git a/Makefile b/Makefile +index 1d8fb9f..35c7d15 100644 +--- a/Makefile ++++ b/Makefile +@@ -42,30 +42,14 @@ LIBSRCS += hdhomerun_video.c + + ifeq ($(OS),Darwin) + +-TARGET_X64 := -target x86_64-apple-macos10.11 +-TARGET_ARM64 := -target arm64-apple-macos11 +- + all : hdhomerun_config libhdhomerun.dylib + +-hdhomerun_config_x64 : hdhomerun_config.c $(LIBSRCS) +- $(CC) $(TARGET_X64) $(CFLAGS) $+ $(LDFLAGS) -o $@ +- $(STRIP) $@ +- +-hdhomerun_config_arm64 : hdhomerun_config.c $(LIBSRCS) +- $(CC) $(TARGET_ARM64) $(CFLAGS) $+ $(LDFLAGS) -o $@ ++hdhomerun_config: hdhomerun_config.c $(LIBSRCS) ++ $(CC) $(CFLAGS) $+ $(LDFLAGS) -o $@ + $(STRIP) $@ + +-hdhomerun_config : hdhomerun_config_x64 hdhomerun_config_arm64 +- lipo -create -output hdhomerun_config hdhomerun_config_x64 hdhomerun_config_arm64 +- +-libhdhomerun_x64.dylib : $(LIBSRCS) +- $(CC) $(TARGET_X64) $(CFLAGS) -DDLL_EXPORT -fPIC -dynamiclib $+ $(LDFLAGS) -o $@ +- +-libhdhomerun_arm64.dylib : $(LIBSRCS) +- $(CC) $(TARGET_ARM64) $(CFLAGS) -DDLL_EXPORT -fPIC -dynamiclib $+ $(LDFLAGS) -o $@ +- +-libhdhomerun.dylib : libhdhomerun_x64.dylib libhdhomerun_arm64.dylib +- lipo -create -output libhdhomerun.dylib libhdhomerun_x64.dylib libhdhomerun_arm64.dylib ++libhdhomerun.dylib : $(LIBSRCS) ++ $(CC) $(CFLAGS) -DDLL_EXPORT -fPIC -dynamiclib $+ $(LDFLAGS) -o $@ + + else + +-- +2.42.0 + diff --git a/pkgs/development/libraries/libhwy/default.nix b/pkgs/development/libraries/libhwy/default.nix index b2f32cbe7252d..664378d42b6d5 100644 --- a/pkgs/development/libraries/libhwy/default.nix +++ b/pkgs/development/libraries/libhwy/default.nix @@ -4,6 +4,7 @@ , ninja , gtest , fetchFromGitHub +, fetchpatch }: stdenv.mkDerivation rec { @@ -17,6 +18,15 @@ stdenv.mkDerivation rec { hash = "sha256-Z+mAR9nSAbCskUvo6oK79Yd85bu0HtI2aR5THS1EozM="; }; + patches = lib.optional stdenv.hostPlatform.isRiscV + # Adds CMake option HWY_CMAKE_RVV + # https://github.com/google/highway/pull/1743 + (fetchpatch { + name = "libhwy-add-rvv-optout.patch"; + url = "https://github.com/google/highway/commit/5d58d233fbcec0c6a39df8186a877329147324b3.patch"; + hash = "sha256-ileSNYddOt1F5rooRB0fXT20WkVlnG+gP5w7qJdBuww="; + }); + nativeBuildInputs = [ cmake ninja ]; # Required for case-insensitive filesystems ("BUILD" exists) @@ -43,6 +53,11 @@ stdenv.mkDerivation rec { # HwyMathTestGroup/HwyMathTest.TestAllAtanh/EMU128 # HwyMathTestGroup/HwyMathTest.TestAllLog1p/EMU128 "-DHWY_CMAKE_SSE2=ON" + ] ++ lib.optionals stdenv.hostPlatform.isRiscV [ + # Runtime dispatch is not implemented https://github.com/google/highway/issues/838 + # so tests (and likely normal operation) fail with SIGILL on processors without V. + # Until the issue is resolved, we disable RVV completely. + "-DHWY_CMAKE_RVV=OFF" ]; # hydra's darwin machines run into https://github.com/libjxl/libjxl/issues/408 diff --git a/pkgs/development/libraries/libime/default.nix b/pkgs/development/libraries/libime/default.nix index 4c12e261f442c..5f914485993a0 100644 --- a/pkgs/development/libraries/libime/default.nix +++ b/pkgs/development/libraries/libime/default.nix @@ -11,9 +11,10 @@ }: let + tableVer = "20240108"; table = fetchurl { - url = "https://download.fcitx-im.org/data/table.tar.gz"; - sha256 = "1dw7mgbaidv3vqy0sh8dbfv8631d2zwv5mlb7npf69a1f8y0b5k1"; + url = "https://download.fcitx-im.org/data/table-${tableVer}.tar.gz"; + hash = "sha256-cpxZbYaQfecnx00Pw/0kHEBsXevStMt07v4CI4funa4="; }; arpaVer = "20230712"; arpa = fetchurl { @@ -28,13 +29,13 @@ let in stdenv.mkDerivation rec { pname = "libime"; - version = "1.1.4"; + version = "1.1.5"; src = fetchFromGitHub { owner = "fcitx"; repo = "libime"; rev = version; - sha256 = "sha256-cjlclemt4xsQcpmZ8CflN79QkOE4m07O4hLOQcLF1nA="; + hash = "sha256-AvlQOpjrHSifUtWSTft2bywlWhwka26VcqqReqAlcv8="; fetchSubmodules = true; }; diff --git a/pkgs/development/libraries/libjcat/default.nix b/pkgs/development/libraries/libjcat/default.nix index bbcae6ab19d14..6d9481d1da2d0 100644 --- a/pkgs/development/libraries/libjcat/default.nix +++ b/pkgs/development/libraries/libjcat/default.nix @@ -19,7 +19,7 @@ stdenv.mkDerivation rec { pname = "libjcat"; - version = "0.2.0"; + version = "0.2.1"; outputs = [ "bin" "out" "dev" "devdoc" "man" "installedTests" ]; @@ -27,7 +27,7 @@ stdenv.mkDerivation rec { owner = "hughsie"; repo = "libjcat"; rev = version; - sha256 = "sha256-nLn2s9hX9f6I1Avxzs24ZPQHglJqKSUTpBpwskVyJKw="; + sha256 = "sha256-tCXz62MEqYBnrx2RxlTBwKGTahfhUCVdet4VnXw5klQ="; }; patches = [ diff --git a/pkgs/development/libraries/libjpeg/default.nix b/pkgs/development/libraries/libjpeg/default.nix index aaa481e8fd5d8..d161ff362bcbc 100644 --- a/pkgs/development/libraries/libjpeg/default.nix +++ b/pkgs/development/libraries/libjpeg/default.nix @@ -5,11 +5,11 @@ stdenv.mkDerivation (finalAttrs: { pname = "libjpeg"; - version = "9e"; + version = "9f"; src = fetchurl { url = "http://www.ijg.org/files/jpegsrc.v${finalAttrs.version}.tar.gz"; - sha256 = "sha256-QHfWpqda6wGIT3CJGdJZNMkzBeSffj8225EpMg5vTz0="; + sha256 = "sha256-BHBcEQyyRpyqeftx+6PXv4NJFHBulkGkWJSFwfgyVls="; }; configureFlags = lib.optional static "--enable-static --disable-shared"; diff --git a/pkgs/development/libraries/libjxl/default.nix b/pkgs/development/libraries/libjxl/default.nix index 820f466d84473..8454f3e1e83b3 100644 --- a/pkgs/development/libraries/libjxl/default.nix +++ b/pkgs/development/libraries/libjxl/default.nix @@ -9,7 +9,7 @@ , libjpeg , libpng , libwebp -, openexr +, openexr_3 , pkg-config , zlib , buildDocs ? true @@ -79,7 +79,7 @@ stdenv.mkDerivation rec { libjpeg libpng libwebp - openexr + openexr_3 zlib ]; diff --git a/pkgs/development/libraries/libmbim/default.nix b/pkgs/development/libraries/libmbim/default.nix index 9965771c1531a..8ceb1b3b03bf3 100644 --- a/pkgs/development/libraries/libmbim/default.nix +++ b/pkgs/development/libraries/libmbim/default.nix @@ -1,7 +1,6 @@ { lib , stdenv , fetchFromGitLab -, fetchpatch , meson , ninja , pkg-config @@ -19,7 +18,7 @@ stdenv.mkDerivation rec { pname = "libmbim"; - version = "1.28.4"; + version = "1.30.0"; outputs = [ "out" "dev" ] ++ lib.optionals withDocs [ "man" ]; @@ -29,27 +28,9 @@ stdenv.mkDerivation rec { owner = "mobile-broadband"; repo = "libmbim"; rev = version; - hash = "sha256-aaYjvJ2OMTzkUyqWCyHdmsKJ3VGqBmKQzb1DWK/1cPU="; + hash = "sha256-sHTpu9WeMZroT+1I18ObEHWSzcyj/Relyz8UNe+WawI="; }; - patches = [ - # Intel Mutual Authentication - FCC lock. Part of 1.30, backported to - # openSUSE and Fedora and ChromeOS. - # https://src.fedoraproject.org/rpms/libmbim/blob/rawhide/f/libmbim.spec - (fetchpatch { - url = "https://cgit.freedesktop.org/libmbim/libmbim/patch/?id=910db9cb2b6fde303d3b4720890cf6dc6fc00880"; - hash = "sha256-412sXdWb8WsSexe1scI/C57dwENgNWoREGO1GxSF4hs="; - }) - - # Intel Tools. Allows tracing various commands. Part of 1.30, backported to - # openSUSE, Fedora and ChromeOS. - # https://src.fedoraproject.org/rpms/libmbim/blob/rawhide/f/libmbim.spec - (fetchpatch { - url = "https://cgit.freedesktop.org/libmbim/libmbim/patch/?id=8a6dec6ed11931601e605c9537da9904b3be5bc0"; - hash = "sha256-tU4zkUl5aZJE+g/qbnWprUHe/PmZvqVKB9qecSaUBhk="; - }) - ]; - mesonFlags = [ "-Dudevdir=${placeholder "out"}/lib/udev" (lib.mesonBool "introspection" withIntrospection) diff --git a/pkgs/development/libraries/libmilter/default.nix b/pkgs/development/libraries/libmilter/default.nix index 3ff3a4ffa9fbc..a06f3d4deca1c 100644 --- a/pkgs/development/libraries/libmilter/default.nix +++ b/pkgs/development/libraries/libmilter/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "libmilter"; - version = "8.17.2"; + version = "8.18.1"; src = fetchurl { url = "ftp://ftp.sendmail.org/pub/sendmail/sendmail.${version}.tar.gz"; - sha256 = "sha256-kPWudMNahICIYZM7oJQgG5AbcMaykDaE3POb2uiloaI="; + sha256 = "sha256-y/HzCcOOSAb3zz6tJCYPF9H+j7YyVtE+2zzdGgmPB3A="; }; buildPhase = '' diff --git a/pkgs/development/libraries/libmysqlconnectorcpp/default.nix b/pkgs/development/libraries/libmysqlconnectorcpp/default.nix index 9707435dcd29d..a5a1983e615e0 100644 --- a/pkgs/development/libraries/libmysqlconnectorcpp/default.nix +++ b/pkgs/development/libraries/libmysqlconnectorcpp/default.nix @@ -8,11 +8,11 @@ stdenv.mkDerivation rec { pname = "libmysqlconnectorcpp"; - version = "8.2.0"; + version = "8.3.0"; src = fetchurl { url = "https://cdn.mysql.com/Downloads/Connector-C++/mysql-connector-c++-${version}-src.tar.gz"; - hash = "sha256-lCRmgiXFpz97eAXNNtddhQLJqOIMoRyVJlMVXvbpCdo="; + hash = "sha256-oXvx+tErGrF/X2x3ZiifuHIA6RlFMjTD7BZk13NL6Pg="; }; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/libnbd/default.nix b/pkgs/development/libraries/libnbd/default.nix index ff90c9b116ad6..5889c8ef12d55 100644 --- a/pkgs/development/libraries/libnbd/default.nix +++ b/pkgs/development/libraries/libnbd/default.nix @@ -1,7 +1,6 @@ { lib , stdenv , fetchurl -, fetchpatch , bash-completion , pkg-config , perl @@ -13,21 +12,13 @@ stdenv.mkDerivation rec { pname = "libnbd"; - version = "1.18.1"; + version = "1.18.2"; src = fetchurl { url = "https://download.libguestfs.org/libnbd/${lib.versions.majorMinor version}-stable/${pname}-${version}.tar.gz"; - hash = "sha256-UNHRphDw1ycRnp0KClzHlSuLIxs5Mc4gcjB+EF/smbY="; + hash = "sha256-OYtNHAIGgwJuapoJNEMVkurUK9bQ7KO+V223bGC0TFI="; }; - patches = [ - (fetchpatch { - name = "CVE-2023-5871.patch"; - url = "https://gitlab.com/nbdkit/libnbd/-/commit/4451e5b61ca07771ceef3e012223779e7a0c7701.patch"; - hash = "sha256-zmg/kxSJtjp2w9917Sp33ezt7Ccj/inngzCUVesF1Tc="; - }) - ]; - nativeBuildInputs = [ bash-completion pkg-config diff --git a/pkgs/development/libraries/liboqs/default.nix b/pkgs/development/libraries/liboqs/default.nix index c2a0216a34e1c..4962f9459d79d 100644 --- a/pkgs/development/libraries/liboqs/default.nix +++ b/pkgs/development/libraries/liboqs/default.nix @@ -17,6 +17,8 @@ stdenv.mkDerivation rec { sha256 = "sha256-h3mXoGRYgPg0wKQ1u6uFP7wlEUMQd5uIBt4Hr7vjNtA="; }; + patches = [ ./fix-openssl-detection.patch ]; + nativeBuildInputs = [ cmake ]; buildInputs = [ openssl ]; diff --git a/pkgs/development/libraries/liboqs/fix-openssl-detection.patch b/pkgs/development/libraries/liboqs/fix-openssl-detection.patch new file mode 100644 index 0000000000000..33be7188370f9 --- /dev/null +++ b/pkgs/development/libraries/liboqs/fix-openssl-detection.patch @@ -0,0 +1,36 @@ +From 6bdcf53de74ac2afba42deea63522939ca51f871 Mon Sep 17 00:00:00 2001 +From: Raphael Robatsch <raphael-git@tapesoftware.net> +Date: Mon, 25 Dec 2023 16:15:29 +0000 +Subject: [PATCH] Do not forcibly set OPENSSL_ROOT_DIR. + +CMake can already find OpenSSL via pkg-config. Setting OPENSSL_ROOT_DIR +forcibly to "/usr" breaks this. +--- + CMakeLists.txt | 11 ----------- + 1 file changed, 11 deletions(-) + +diff --git a/CMakeLists.txt b/CMakeLists.txt +index 288bcbe8..9750fae6 100644 +--- a/CMakeLists.txt ++++ b/CMakeLists.txt +@@ -119,17 +119,6 @@ include(.CMake/compiler_opts.cmake) + include(.CMake/alg_support.cmake) + + if(${OQS_USE_OPENSSL}) +- if(NOT DEFINED OPENSSL_ROOT_DIR) +- if(${CMAKE_HOST_SYSTEM_NAME} STREQUAL "Darwin") +- if(EXISTS "/usr/local/opt/openssl@1.1") +- set(OPENSSL_ROOT_DIR "/usr/local/opt/openssl@1.1") +- elseif(EXISTS "/opt/homebrew/opt/openssl@1.1") +- set(OPENSSL_ROOT_DIR "/opt/homebrew/opt/openssl@1.1") +- endif() +- elseif(${CMAKE_HOST_SYSTEM_NAME} STREQUAL "Linux") +- set(OPENSSL_ROOT_DIR "/usr") +- endif() +- endif() + find_package(OpenSSL 1.1.1 REQUIRED) + endif() + +-- +2.42.0 + diff --git a/pkgs/development/libraries/libphonenumber/build-reproducibility.patch b/pkgs/development/libraries/libphonenumber/build-reproducibility.patch index 202370a80fc53..137c9045c77da 100644 --- a/pkgs/development/libraries/libphonenumber/build-reproducibility.patch +++ b/pkgs/development/libraries/libphonenumber/build-reproducibility.patch @@ -1,8 +1,6 @@ -diff --git a/tools/cpp/src/cpp-build/generate_geocoding_data.cc b/tools/cpp/src/cpp-build/generate_geocoding_data.cc -index 205947e831..1e628e2cd2 100644 ---- a/tools/cpp/src/cpp-build/generate_geocoding_data.cc -+++ b/tools/cpp/src/cpp-build/generate_geocoding_data.cc -@@ -97,7 +97,8 @@ class DirEntry { +--- a/tools/cpp/src/cpp-build/generate_geocoding_data.cc.orig 1970-01-01 01:00:01.000000000 +0100 ++++ b/tools/cpp/src/cpp-build/generate_geocoding_data.cc 2024-01-16 19:03:45.409089423 +0100 +@@ -94,7 +94,8 @@ DirEntryKinds kind_; }; @@ -12,13 +10,19 @@ index 205947e831..1e628e2cd2 100644 // success. bool ListDirectory(const string& path, vector<DirEntry>* entries) { entries->clear(); -@@ -135,6 +136,9 @@ bool ListDirectory(const string& path, vector<DirEntry>* entries) { +@@ -114,8 +115,14 @@ + // http://pubs.opengroup.org/onlinepubs/9699919799/functions/readdir.html + errno = 0; + entry = readdir(dir); ++ if (errno != 0) { ++ return false; ++ } + if (entry == NULL) { +- return errno == 0; ++ std::sort( ++ entries->begin(), entries->end(), ++ [](const DirEntry& a, const DirEntry& b) { return a.name() < b.name(); }); ++ return true; } - entries->push_back(DirEntry(entry->d_name, kind)); - } -+ std::sort( -+ entries->begin(), entries->end(), -+ [](const DirEntry& a, const DirEntry& b) { return a.name() < b.name(); }); - } - - // Returns true if s ends with suffix. + if (strcmp(entry->d_name, ".") == 0 || strcmp(entry->d_name, "..") == 0) { + continue; diff --git a/pkgs/development/libraries/libphonenumber/default.nix b/pkgs/development/libraries/libphonenumber/default.nix index a9b0df3304be5..edd3379617279 100644 --- a/pkgs/development/libraries/libphonenumber/default.nix +++ b/pkgs/development/libraries/libphonenumber/default.nix @@ -1,7 +1,7 @@ { lib, stdenv, fetchFromGitHub, cmake, gtest, boost, pkg-config, protobuf, icu, Foundation, buildPackages }: stdenv.mkDerivation rec { - pname = "phonenumber"; + pname = "libphonenumber"; version = "8.12.37"; src = fetchFromGitHub { @@ -12,7 +12,8 @@ stdenv.mkDerivation rec { }; patches = [ - # Submitted upstream: https://github.com/google/libphonenumber/pull/2921 + # An earlier version of this patch was submitted upstream but did not get + # any interest there - https://github.com/google/libphonenumber/pull/2921 ./build-reproducibility.patch ]; diff --git a/pkgs/development/libraries/libplacebo/default.nix b/pkgs/development/libraries/libplacebo/default.nix index 60a3f89895784..cad556ee7a7e3 100644 --- a/pkgs/development/libraries/libplacebo/default.nix +++ b/pkgs/development/libraries/libplacebo/default.nix @@ -10,21 +10,23 @@ , shaderc , lcms2 , libGL -, xorg +, libX11 , libunwind , libdovi +, xxHash +, fast-float }: stdenv.mkDerivation rec { pname = "libplacebo"; - version = "5.264.1"; + version = "6.338.1"; src = fetchFromGitLab { domain = "code.videolan.org"; owner = "videolan"; repo = pname; rev = "v${version}"; - hash = "sha256-YEefuEfJURi5/wswQKskA/J1UGzessQQkBpltJ0Spq8="; + hash = "sha256-NZmwR3+lIC2PF+k+kqCjoMYkMM/PKOJmDwAq7t6YONY="; }; nativeBuildInputs = [ @@ -41,18 +43,21 @@ stdenv.mkDerivation rec { shaderc lcms2 libGL - xorg.libX11 + libX11 libunwind libdovi + xxHash + ] ++ lib.optionals (!stdenv.cc.isGNU) [ + fast-float ]; - mesonFlags = [ - "-Dvulkan-registry=${vulkan-headers}/share/vulkan/registry/vk.xml" - "-Ddemos=false" # Don't build and install the demo programs - "-Dd3d11=disabled" # Disable the Direct3D 11 based renderer - "-Dglslang=disabled" # rely on shaderc for GLSL compilation instead - ] ++ lib.optionals stdenv.isDarwin [ - "-Dunwind=disabled" # libplacebo doesn’t build with `darwin.libunwind` + mesonFlags = with lib; [ + (mesonOption "vulkan-registry" "${vulkan-headers}/share/vulkan/registry/vk.xml") + (mesonBool "demos" false) # Don't build and install the demo programs + (mesonEnable "d3d11" false) # Disable the Direct3D 11 based renderer + (mesonEnable "glslang" false) # rely on shaderc for GLSL compilation instead + ] ++ optionals stdenv.isDarwin [ + (mesonEnable "unwind" false) # libplacebo doesn’t build with `darwin.libunwind` ]; postPatch = '' diff --git a/pkgs/development/libraries/libqmi/default.nix b/pkgs/development/libraries/libqmi/default.nix index 6f7583d563b10..58fadd30ee8d5 100644 --- a/pkgs/development/libraries/libqmi/default.nix +++ b/pkgs/development/libraries/libqmi/default.nix @@ -23,7 +23,7 @@ stdenv.mkDerivation rec { pname = "libqmi"; - version = "1.32.4"; + version = "1.34.0"; outputs = [ "out" "dev" ] ++ lib.optional withIntrospection "devdoc"; @@ -33,7 +33,7 @@ stdenv.mkDerivation rec { owner = "mobile-broadband"; repo = "libqmi"; rev = version; - hash = "sha256-cczGvoD+2+G6uiAt0Iv1BO4/FqzO9bkqhFsEwOfp7qw="; + hash = "sha256-l9ev9ZOWicVNZ/Wj//KNd3NHcefIrLVriqJhEpwWvtQ="; }; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/libraw/default.nix b/pkgs/development/libraries/libraw/default.nix index b03be435aac51..d8e9f1f5a2f5d 100644 --- a/pkgs/development/libraries/libraw/default.nix +++ b/pkgs/development/libraries/libraw/default.nix @@ -1,7 +1,6 @@ { lib , stdenv , fetchFromGitHub -, fetchpatch , autoreconfHook , lcms2 , pkg-config @@ -16,23 +15,15 @@ stdenv.mkDerivation rec { pname = "libraw"; - version = "0.21.1"; + version = "0.21.2"; src = fetchFromGitHub { owner = "LibRaw"; repo = "LibRaw"; rev = version; - sha256 = "sha256-K9mULf6V/TCl5Vu4iuIdSGF9HzQlgNQLRFHIpNbmAlY"; + hash = "sha256-p9CmOCulvV7+KKn1lXwpcysOo0+mD5UgPqy2ki0cIFE="; }; - patches = [ - (fetchpatch { - name = "CVE-2023-1729.patch"; - url = "https://github.com/LibRaw/LibRaw/commit/9ab70f6dca19229cb5caad7cc31af4e7501bac93.patch"; - hash = "sha256-OAyqphxvtSM15NI77HwtGTmTmP9YNu3xhZ6D1CceJ7I="; - }) - ]; - outputs = [ "out" "lib" "dev" "doc" ]; propagatedBuildInputs = [ lcms2 ]; diff --git a/pkgs/development/libraries/libre/default.nix b/pkgs/development/libraries/libre/default.nix index 8e3b37c7635a7..92749a35e93a1 100644 --- a/pkgs/development/libraries/libre/default.nix +++ b/pkgs/development/libraries/libre/default.nix @@ -8,13 +8,13 @@ }: stdenv.mkDerivation rec { - version = "3.8.0"; + version = "3.9.0"; pname = "libre"; src = fetchFromGitHub { owner = "baresip"; repo = "re"; rev = "v${version}"; - sha256 = "sha256-zKoK5GsgNnmQrEZ5HAse2e1Gy7fPO42DEvVAL5ZTNhc="; + sha256 = "sha256-oFaCeVaUrAN83DT8m4gvXSaKzxq5AJw2RHwOelm8HAU="; }; buildInputs = [ diff --git a/pkgs/development/libraries/librealsense/default.nix b/pkgs/development/libraries/librealsense/default.nix index 9a127fcd92ad3..fe35759da63a9 100644 --- a/pkgs/development/libraries/librealsense/default.nix +++ b/pkgs/development/libraries/librealsense/default.nix @@ -44,6 +44,12 @@ stdenv.mkDerivation rec { patches = [ ./py_pybind11_no_external_download.patch ./install-presets.patch + # https://github.com/IntelRealSense/librealsense/pull/11917 + (fetchpatch { + name = "fix-gcc13-missing-cstdint.patch"; + url = "https://github.com/IntelRealSense/librealsense/commit/b59b13671658910fc453a4a6bbd61f13ba6e83cc.patch"; + hash = "sha256-zaW8HG8rfsApI5S/3x+x9Fx8xhyTIPNn/fJVFtkmlEA="; + }) ]; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/libredwg/default.nix b/pkgs/development/libraries/libredwg/default.nix index 9f530271771ac..7759917d97504 100644 --- a/pkgs/development/libraries/libredwg/default.nix +++ b/pkgs/development/libraries/libredwg/default.nix @@ -1,6 +1,7 @@ { lib , stdenv , fetchFromGitHub +, fetchpatch , autoreconfHook , writeShellScript , pkg-config @@ -27,6 +28,14 @@ stdenv.mkDerivation rec { fetchSubmodules = true; }; + patches = [ + (fetchpatch { + name = "CVE-2023-26157.patch"; + url = "https://github.com/LibreDWG/libredwg/commit/c8cf03ce4c2315b146caf582ea061c0460193bcc.patch"; + hash = "sha256-EEF3YYPW+6SvXRiAw3zz6tWU9w/qmGtc09Tf8wn7hVc="; + }) + ]; + postPatch = let printVersion = writeShellScript "print-version" '' echo -n ${lib.escapeShellArg version} diff --git a/pkgs/development/libraries/libremidi/default.nix b/pkgs/development/libraries/libremidi/default.nix index d88ebeea3fb5a..753bcef433fd9 100644 --- a/pkgs/development/libraries/libremidi/default.nix +++ b/pkgs/development/libraries/libremidi/default.nix @@ -37,7 +37,7 @@ stdenv.mkDerivation rec { meta = { description = "A modern C++ MIDI real-time & file I/O library"; homepage = "https://github.com/jcelerier/libremidi"; - maintainers = [ lib.maintainers.paveloom ]; + maintainers = [ ]; license = lib.licenses.bsd2; platforms = lib.platforms.all; }; diff --git a/pkgs/development/libraries/libressl/default.nix b/pkgs/development/libraries/libressl/default.nix index 613f7d3a2b347..740d84072d1e3 100644 --- a/pkgs/development/libraries/libressl/default.nix +++ b/pkgs/development/libraries/libressl/default.nix @@ -87,6 +87,15 @@ let platforms = platforms.all; maintainers = with maintainers; [ thoughtpolice fpletz ]; inherit knownVulnerabilities; + + # OpenBSD believes that PowerPC should be always-big-endian; + # this assumption seems to have propagated into recent + # releases of libressl. Since libressl is aliased to many + # other packages (e.g. netcat) it's important to fail early + # here, otherwise it's very difficult to figure out why + # libressl is getting dragged into a failing build. + badPlatforms = with lib.systems.inspect.patterns; + [ (lib.recursiveUpdate isPower64 isLittleEndian) ]; }; }; diff --git a/pkgs/development/libraries/librist/darwin.patch b/pkgs/development/libraries/librist/darwin.patch index f9571fd434f7d..6a5cc8459a367 100644 --- a/pkgs/development/libraries/librist/darwin.patch +++ b/pkgs/development/libraries/librist/darwin.patch @@ -1,3 +1,5 @@ +diff --git a/tools/srp_shared.c b/tools/srp_shared.c +index f782126..23e82a5 100644 --- a/tools/srp_shared.c +++ b/tools/srp_shared.c @@ -173,7 +173,11 @@ void user_verifier_lookup(char * username, @@ -5,9 +7,9 @@ return; +#if defined(__APPLE__) -+ *generation = (buf.st_mtimespec.tv_sec << 32) | buf.st_mtimespec.tv_nsec; ++ *generation = ((uint64_t)buf.st_mtimespec.tv_sec << 32) | buf.st_mtimespec.tv_nsec; +#else - *generation = (buf.st_mtim.tv_sec << 32) | buf.st_mtim.tv_nsec; + *generation = ((uint64_t)buf.st_mtim.tv_sec << 32) | buf.st_mtim.tv_nsec; +#endif #endif diff --git a/pkgs/development/libraries/librist/default.nix b/pkgs/development/libraries/librist/default.nix index c883530907035..3f56ff3248767 100644 --- a/pkgs/development/libraries/librist/default.nix +++ b/pkgs/development/libraries/librist/default.nix @@ -11,14 +11,14 @@ stdenv.mkDerivation rec { pname = "librist"; - version = "0.2.8"; + version = "0.2.10"; src = fetchFromGitLab { domain = "code.videolan.org"; owner = "rist"; repo = "librist"; rev = "v${version}"; - hash = "sha256-E12TS+N47UQapkF6oO0Lx66Z3lHAyP0R4tVnx/uKBwQ="; + hash = "sha256-8N4wQXxjNZuNGx/c7WVAV5QS48Bff5G3t11UkihT+K0="; }; patches = [ diff --git a/pkgs/development/libraries/libshumate/default.nix b/pkgs/development/libraries/libshumate/default.nix index a7a9eda44f2f5..30ee9803126e3 100644 --- a/pkgs/development/libraries/libshumate/default.nix +++ b/pkgs/development/libraries/libshumate/default.nix @@ -79,7 +79,6 @@ stdenv.mkDerivation rec { passthru = { updateScript = gnome.updateScript { packageName = pname; - versionPolicy = "none"; }; }; diff --git a/pkgs/development/libraries/libsolv/default.nix b/pkgs/development/libraries/libsolv/default.nix index 8f06936b59590..6af948f678284 100644 --- a/pkgs/development/libraries/libsolv/default.nix +++ b/pkgs/development/libraries/libsolv/default.nix @@ -16,14 +16,14 @@ }: stdenv.mkDerivation rec { - version = "0.7.27"; + version = "0.7.28"; pname = "libsolv"; src = fetchFromGitHub { owner = "openSUSE"; repo = "libsolv"; rev = version; - sha256 = "sha256-kVExzCHfPU/o+C5TTAv1J9H7GmYwVWCsIpVkkts42js="; + sha256 = "sha256-cL7SDwCzXM2qJQfiu/3nfAiFbcFNn1YXD23Sl3n9nzY="; }; cmakeFlags = [ diff --git a/pkgs/development/libraries/libubox/default.nix b/pkgs/development/libraries/libubox/default.nix index 2bcc5d0498c4c..09837cd0c1d87 100644 --- a/pkgs/development/libraries/libubox/default.nix +++ b/pkgs/development/libraries/libubox/default.nix @@ -2,12 +2,12 @@ stdenv.mkDerivation { pname = "libubox"; - version = "unstable-2023-11-28"; + version = "unstable-2023-12-18"; src = fetchgit { url = "https://git.openwrt.org/project/libubox.git"; - rev = "e80dc00ee90c29ef56ae28f414b0e5bb361206e7"; - hash = "sha256-R4Yz4C63LQTNBKyNyiLMQHfc5KJBPFldP1trmtEBb9U="; + rev = "6339204c212b2c3506554a8842030df5ec6fe9c6"; + hash = "sha256-QgpORITt6MYgfzUpaI2T0Ge2a0iVHjDhdYI/nZ2HbJ8="; }; cmakeFlags = [ "-DBUILD_EXAMPLES=OFF" (if with_lua then "-DLUAPATH=${placeholder "out"}/lib/lua" else "-DBUILD_LUA=OFF") ]; diff --git a/pkgs/development/libraries/libucl/default.nix b/pkgs/development/libraries/libucl/default.nix index 9ba96644102e2..f684b52a1105d 100644 --- a/pkgs/development/libraries/libucl/default.nix +++ b/pkgs/development/libraries/libucl/default.nix @@ -25,13 +25,13 @@ let in stdenv.mkDerivation rec { pname = "libucl"; - version = "0.8.2"; + version = "0.9.0"; src = fetchFromGitHub { owner = "vstakhov"; repo = pname; rev = version; - sha256 = "sha256-rpTc0gq8HquDow4NEkRSjyESEMrv8dAhX98yKKu/Fsk="; + sha256 = "sha256-uMkILLG2SC+Q+w7jb0PMsaTET2z1V9Ar0lQhXS1K2+g="; }; nativeBuildInputs = [ pkg-config autoreconfHook ]; diff --git a/pkgs/development/libraries/libunwind/default.nix b/pkgs/development/libraries/libunwind/default.nix index 6f05307381a09..cae3ebed89f63 100644 --- a/pkgs/development/libraries/libunwind/default.nix +++ b/pkgs/development/libraries/libunwind/default.nix @@ -1,22 +1,16 @@ -{ stdenv, lib, fetchurl, fetchpatch, autoreconfHook, xz, buildPackages }: +{ stdenv, lib, fetchFromGitHub, fetchpatch, autoreconfHook, xz, buildPackages }: stdenv.mkDerivation rec { pname = "libunwind"; - version = "1.6.2"; + version = "1.7.2"; - src = fetchurl { - url = "mirror://savannah/libunwind/${pname}-${version}.tar.gz"; - sha256 = "sha256-SmrsZmmR+0XQiJxErt6K1usQgHHDVU/N/2cfnJR5SXY="; + src = fetchFromGitHub { + owner = "libunwind"; + repo = "libunwind"; + rev = "v${version}"; + hash = "sha256-z5YCue0zadQnMEbGFniFvDjXNy6dSHQDQnXRXS6Uh/Y="; }; - patches = [ - # Fix for aarch64 and non-4K pages. Remove once upgraded past 1.6.2. - (fetchpatch { - url = "https://github.com/libunwind/libunwind/commit/e85b65cec757ef589f28957d0c6c21c498a03bdf.patch"; - sha256 = "1lnlygvhqrdrjgw303pg2k2k4ms4gaghpjsgmhk47q83vy1yjwfg"; - }) - ]; - postPatch = if (stdenv.cc.isClang || stdenv.hostPlatform.isStatic) then '' substituteInPlace configure.ac --replace "-lgcc_s" "" '' else lib.optionalString stdenv.hostPlatform.isMusl '' @@ -29,7 +23,11 @@ stdenv.mkDerivation rec { # Without latex2man, no man pages are installed despite being # prebuilt in the source tarball. - configureFlags = [ "LATEX2MAN=${buildPackages.coreutils}/bin/true" ]; + configureFlags = [ "LATEX2MAN=${buildPackages.coreutils}/bin/true" ] + # See https://github.com/libunwind/libunwind/issues/693 + ++ lib.optionals (with stdenv.hostPlatform; isAarch64 && isMusl && !isStatic) [ + "CFLAGS=-mno-outline-atomics" + ]; propagatedBuildInputs = [ xz ]; @@ -46,7 +44,19 @@ stdenv.mkDerivation rec { description = "A portable and efficient API to determine the call-chain of a program"; maintainers = with maintainers; [ orivej ]; # https://github.com/libunwind/libunwind#libunwind - platforms = [ "aarch64-linux" "armv5tel-linux" "armv6l-linux" "armv7a-linux" "armv7l-linux" "i686-freebsd13" "i686-linux" "mips64el-linux" "mipsel-linux" "powerpc64-linux" "powerpc64le-linux" "riscv64-linux" "x86_64-freebsd13" "x86_64-linux" "x86_64-solaris" ]; + platforms = [ "aarch64-linux" "armv5tel-linux" "armv6l-linux" "armv7a-linux" "armv7l-linux" "i686-freebsd13" "i686-linux" "loongarch64-linux" "mips64el-linux" "mipsel-linux" "powerpc64-linux" "powerpc64le-linux" "riscv64-linux" "s390x-linux" "x86_64-freebsd13" "x86_64-linux" "x86_64-solaris" ]; + # libunwind relies on getcontext/setcontext, + # and only has a musl implementation for some platforms + # https://github.com/libunwind/libunwind/issues/33 + # https://github.com/libunwind/libunwind/issues/69 + badPlatforms = [ { + isAarch64 = false; + isRiscV64 = false; + isS390x = false; + isx86_64 = false; + isMusl = true; + parsed = {}; + } ]; license = licenses.mit; }; } diff --git a/pkgs/development/libraries/libvgm/default.nix b/pkgs/development/libraries/libvgm/default.nix index 31508b01fbd0a..0d7c098255f24 100644 --- a/pkgs/development/libraries/libvgm/default.nix +++ b/pkgs/development/libraries/libvgm/default.nix @@ -40,15 +40,15 @@ let inherit (lib) optional optionals; onOff = val: if val then "ON" else "OFF"; in -stdenv.mkDerivation rec { +stdenv.mkDerivation { pname = "libvgm"; - version = "unstable-2023-08-14"; + version = "unstable-2024-01-03"; src = fetchFromGitHub { owner = "ValleyBell"; repo = "libvgm"; - rev = "079c4e737e6a73b38ae20125521d7d9eafda28e9"; - sha256 = "hmaGIf9AQOYqrpnmKAB9I2vO+EXrzvoRaQ6Epdygy4o="; + rev = "223b6f9d629feda1982dc4bbeebd19fa63b987fb"; + hash = "sha256-CrqgDuOsY+Hpp41De6oWJduj8d8ftMUanMEWJKh79rw="; }; outputs = [ diff --git a/pkgs/development/libraries/libvirt/default.nix b/pkgs/development/libraries/libvirt/default.nix index ff40c3693fffb..17875c415b144 100644 --- a/pkgs/development/libraries/libvirt/default.nix +++ b/pkgs/development/libraries/libvirt/default.nix @@ -114,13 +114,13 @@ stdenv.mkDerivation rec { # NOTE: You must also bump: # <nixpkgs/pkgs/development/python-modules/libvirt/default.nix> # SysVirt in <nixpkgs/pkgs/top-level/perl-packages.nix> - version = "9.10.0"; + version = "10.0.0"; src = fetchFromGitLab { owner = pname; repo = pname; rev = "v${version}"; - sha256 = "sha256-SYk3aseaVD31rnGKj/7eoLldGbOdJfKMw4tVDjtjcwY="; + hash = "sha256-xFl8AHcbeuydWzhJNnwZ3Bd7TQiTU8hjBxaALXvcLgE="; fetchSubmodules = true; }; diff --git a/pkgs/development/libraries/libxmlb/default.nix b/pkgs/development/libraries/libxmlb/default.nix index 391874e531d73..522d3546b8e0a 100644 --- a/pkgs/development/libraries/libxmlb/default.nix +++ b/pkgs/development/libraries/libxmlb/default.nix @@ -18,7 +18,7 @@ stdenv.mkDerivation rec { pname = "libxmlb"; - version = "0.3.14"; + version = "0.3.15"; outputs = [ "out" "lib" "dev" "devdoc" "installedTests" ]; @@ -26,7 +26,7 @@ stdenv.mkDerivation rec { owner = "hughsie"; repo = "libxmlb"; rev = version; - hash = "sha256-lpVXl/n/ecDLbbLQg9T+o4GdGZM7pNXGYTyVogNCl2E="; + hash = "sha256-S0wBVhfRa81mAmqpYYAKAyKLnfnVsXJEcGA21i5tdzo="; }; patches = [ diff --git a/pkgs/development/libraries/libxslt/default.nix b/pkgs/development/libraries/libxslt/default.nix index dbca7f7fc2b79..95ecbbc44deea 100644 --- a/pkgs/development/libraries/libxslt/default.nix +++ b/pkgs/development/libraries/libxslt/default.nix @@ -60,6 +60,8 @@ stdenv.mkDerivation rec { "--without-crypto" ]; + enableParallelBuilding = true; + postFixup = '' moveToOutput bin/xslt-config "$dev" moveToOutput lib/xsltConf.sh "$dev" diff --git a/pkgs/development/libraries/libzip/default.nix b/pkgs/development/libraries/libzip/default.nix index 14e2f44808242..b343184760330 100644 --- a/pkgs/development/libraries/libzip/default.nix +++ b/pkgs/development/libraries/libzip/default.nix @@ -1,5 +1,6 @@ { lib, stdenv , cmake +, fetchpatch2 , fetchurl , perl , zlib @@ -24,6 +25,15 @@ stdenv.mkDerivation (finalAttrs: { sha256 = "sha256-lmmuXf46xbOJdTbchGaodMjPLA47H90I11snOIQpk2M="; }; + patches = [ + # https://github.com/nih-at/libzip/issues/404 + (fetchpatch2 { + name = "Check-for-zstd_TARGET-before-using-it-in-a-regex.patch"; + url = "https://github.com/nih-at/libzip/commit/c719428916b4d19e838f873b1a177b126a080d61.patch"; + hash = "sha256-4ksbXEM8kNvs3wtbIaXLEQNSKaxl0es/sIg0EINaTHE="; + }) + ]; + outputs = [ "out" "dev" "man" ]; nativeBuildInputs = [ cmake perl groff ]; diff --git a/pkgs/development/libraries/linenoise/create-pkg-config-file.sh b/pkgs/development/libraries/linenoise/create-pkg-config-file.sh deleted file mode 100755 index e3c38f05ab4c9..0000000000000 --- a/pkgs/development/libraries/linenoise/create-pkg-config-file.sh +++ /dev/null @@ -1,13 +0,0 @@ -cat <<EOF > linenoise.pc -prefix=$out -exec_prefix=\${prefix} -libdir=\${exec_prefix}/lib -includedir=\${prefix}/include - -Name: linenoise -Description: A minimal, zero-config, BSD licensed, readline replacement. -Requires: -Version: 1.0.10 -Cflags: -I\${includedir}/ \${prefix}/src/linenoise.c - -EOF diff --git a/pkgs/development/libraries/linenoise/default.nix b/pkgs/development/libraries/linenoise/default.nix index e337e32b2353c..a934ec19d7c13 100644 --- a/pkgs/development/libraries/linenoise/default.nix +++ b/pkgs/development/libraries/linenoise/default.nix @@ -1,29 +1,48 @@ -{ lib, stdenv, fetchFromGitHub }: +{ lib +, stdenv +, fetchFromGitHub +, validatePkgConfig +}: stdenv.mkDerivation { pname = "linenoise"; - version = "1.0.10"; # Its version 1.0 plus 10 commits + version = "1.0-34-g93b2db9"; src = fetchFromGitHub { owner = "antirez"; repo = "linenoise"; - rev = "c894b9e59f02203dbe4e2be657572cf88c4230c3"; - sha256 = "0wasql7ph5g473zxhc2z47z3pjp42q0dsn4gpijwzbxawid71b4w"; + rev = "1.0-34-g93b2db9"; + hash = "sha256-GsrYg16gpjHkkmpCU3yGzqNS/buZl+JoWALLvwzmT4A="; }; - buildPhase = ./create-pkg-config-file.sh; + nativeBuildInputs = [ validatePkgConfig ]; + + buildPhase = '' + runHook preBuild + + $CC -c -o linenoise.o linenoise.c + $CC -shared -o liblinenoise.so linenoise.o + $AR rcs liblinenoise.a linenoise.o + + runHook postBuild + ''; installPhase = '' - mkdir -p $out/{lib/pkgconfig,src,include} - cp linenoise.c $out/src/ - cp linenoise.h $out/include/ - cp linenoise.pc $out/lib/pkgconfig/ + runHook preInstall + + install -d $out/lib/pkgconfig $out/include + install -m644 linenoise.h $out/include/ + install -m644 liblinenoise.a $out/lib/ + install -m644 liblinenoise.so $out/lib/ + substituteAll ${./linenoise.pc.in} $out/lib/pkgconfig/linenoise.pc + + runHook postInstall ''; meta = { homepage = "https://github.com/antirez/linenoise"; description = "A minimal, zero-config, BSD licensed, readline replacement"; - maintainers = with lib.maintainers; [ fstamour ]; + maintainers = with lib.maintainers; [ fstamour remexre ]; platforms = lib.platforms.unix; license = lib.licenses.bsd2; }; diff --git a/pkgs/development/libraries/linenoise/linenoise.pc.in b/pkgs/development/libraries/linenoise/linenoise.pc.in new file mode 100644 index 0000000000000..feb917dab0d96 --- /dev/null +++ b/pkgs/development/libraries/linenoise/linenoise.pc.in @@ -0,0 +1,10 @@ +prefix=@out@ +exec_prefix=${prefix} +libdir=${exec_prefix}/lib +includedir=${prefix}/include + +Name: linenoise +Description: A minimal, zero-config, BSD licensed, readline replacement. +Version: @version@ +Libs: -L${libdir} -llinenoise +Cflags: -I${includedir} diff --git a/pkgs/development/libraries/live555/default.nix b/pkgs/development/libraries/live555/default.nix deleted file mode 100644 index 369e9ff825f7f..0000000000000 --- a/pkgs/development/libraries/live555/default.nix +++ /dev/null @@ -1,75 +0,0 @@ -{ lib -, stdenv -, fetchurl -, darwin -, openssl - -# major and only downstream dependency -, vlc -}: - -stdenv.mkDerivation rec { - pname = "live555"; - version = "2023.05.10"; - - src = fetchurl { - urls = [ - "http://www.live555.com/liveMedia/public/live.${version}.tar.gz" - "https://download.videolan.org/contrib/live555/live.${version}.tar.gz" - "mirror://sourceforge/slackbuildsdirectlinks/live.${version}.tar.gz" - ]; - sha256 = "sha256-6ph9x4UYELkkJVIE9r25ycc5NOYbPcgAy9LRZebvGFY="; - }; - - nativeBuildInputs = lib.optional stdenv.isDarwin darwin.cctools; - - buildInputs = [ openssl ]; - - postPatch = '' - substituteInPlace config.macosx-catalina \ - --replace '/usr/lib/libssl.46.dylib' "${lib.getLib openssl}/lib/libssl.dylib" \ - --replace '/usr/lib/libcrypto.44.dylib' "${lib.getLib openssl}/lib/libcrypto.dylib" - sed -i -e 's|/bin/rm|rm|g' genMakefiles - sed -i \ - -e 's/$(INCLUDES) -I. -O2 -DSOCKLEN_T/$(INCLUDES) -I. -O2 -I. -fPIC -DRTSPCLIENT_SYNCHRONOUS_INTERFACE=1 -DSOCKLEN_T/g' \ - config.linux - '' # condition from icu/base.nix - + lib.optionalString (stdenv.hostPlatform.libc == "glibc" || stdenv.hostPlatform.libc == "musl") '' - substituteInPlace liveMedia/include/Locale.hh \ - --replace '<xlocale.h>' '<locale.h>' - ''; - - configurePhase = '' - runHook preConfigure - - ./genMakefiles ${ - if stdenv.isLinux then - "linux" - else if stdenv.isDarwin then - "macosx-catalina" - else - throw "Unsupported platform ${stdenv.hostPlatform.system}"} - - runHook postConfigure - ''; - - makeFlags = [ - "DESTDIR=${placeholder "out"}" - "PREFIX=" - ]; - - enableParallelBuilding = true; - - passthru.tests = { - inherit vlc; - }; - - meta = with lib; { - homepage = "http://www.live555.com/liveMedia/"; - description = "Set of C++ libraries for multimedia streaming, using open standard protocols (RTP/RTCP, RTSP, SIP)"; - changelog = "http://www.live555.com/liveMedia/public/changelog.txt"; - license = licenses.lgpl21Plus; - maintainers = with maintainers; [ AndersonTorres ]; - platforms = platforms.unix; - }; -} diff --git a/pkgs/development/libraries/log4cxx/default.nix b/pkgs/development/libraries/log4cxx/default.nix index 898d2a5d9ea4c..d557d5d07e4e7 100644 --- a/pkgs/development/libraries/log4cxx/default.nix +++ b/pkgs/development/libraries/log4cxx/default.nix @@ -4,11 +4,11 @@ stdenv.mkDerivation rec { pname = "log4cxx"; - version = "1.1.0"; + version = "1.2.0"; src = fetchurl { url = "mirror://apache/logging/log4cxx/${version}/apache-${pname}-${version}.tar.gz"; - hash = "sha256-H8fYJpdTQYS8D3VzSNlp0khSuUj2PWsXKD/R7inCwoo="; + hash = "sha256-CfR0iqVnXvXAdwvtv14ASIZokzxak1pDrFuFviQ2xIo="; }; postPatch = '' diff --git a/pkgs/development/libraries/mailcore2/default.nix b/pkgs/development/libraries/mailcore2/default.nix index 77e7669c0e123..86b4a320b68f8 100644 --- a/pkgs/development/libraries/mailcore2/default.nix +++ b/pkgs/development/libraries/mailcore2/default.nix @@ -1,5 +1,6 @@ { stdenv, lib, fetchFromGitHub, cmake, libetpan, icu, cyrus_sasl, libctemplate , libuchardet, pkg-config, glib, html-tidy, libxml2, libuuid, openssl +, darwin }: stdenv.mkDerivation rec { @@ -16,8 +17,14 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ cmake pkg-config ]; buildInputs = [ - libetpan icu cyrus_sasl libctemplate libuchardet glib - html-tidy libxml2 libuuid openssl + libetpan cyrus_sasl libctemplate libuchardet + html-tidy libxml2 openssl + ] ++ lib.optionals stdenv.isLinux [ + glib + icu + libuuid + ] ++ lib.optionals stdenv.isDarwin [ + darwin.apple_sdk.frameworks.Foundation ]; postPatch = '' @@ -28,9 +35,14 @@ stdenv.mkDerivation rec { --replace "/usr/include/libxml2" "${libxml2.dev}/include/libxml2" substituteInPlace src/core/basetypes/MCHTMLCleaner.cpp \ --replace buffio.h tidybuffio.h + substituteInPlace src/core/basetypes/MCString.cpp \ + --replace "xmlErrorPtr" "const xmlError *" + '' + lib.optionalString (!stdenv.isDarwin) '' + substituteInPlace src/core/basetypes/MCICUTypes.h \ + --replace "__CHAR16_TYPE__ UChar" "char16_t UChar" ''; - cmakeFlags = [ + cmakeFlags = lib.optionals (!stdenv.isDarwin) [ "-DBUILD_SHARED_LIBS=ON" ]; @@ -39,10 +51,10 @@ stdenv.mkDerivation rec { cp -r src/include $out mkdir $out/lib - cp src/libMailCore.so $out/lib + cp src/libMailCore.* $out/lib ''; - doCheck = true; + doCheck = !stdenv.isDarwin; checkPhase = '' ( cd unittest @@ -55,5 +67,6 @@ stdenv.mkDerivation rec { homepage = "http://libmailcore.com"; license = licenses.bsd3; maintainers = with maintainers; [ ]; + platforms = platforms.unix; }; } diff --git a/pkgs/development/libraries/maplibre-gl-native/default.nix b/pkgs/development/libraries/maplibre-gl-native/default.nix index 65a5c266ee6a6..3b2e988d47953 100644 --- a/pkgs/development/libraries/maplibre-gl-native/default.nix +++ b/pkgs/development/libraries/maplibre-gl-native/default.nix @@ -2,6 +2,7 @@ , mkDerivation , fetchFromGitHub , fetchpatch +, fetchpatch2 , cmake , pkg-config , qtbase @@ -30,6 +31,11 @@ mkDerivation rec { url = "https://git.alpinelinux.org/aports/plain/testing/mapbox-gl-native/0002-skip-license-check.patch?id=6751a93dca26b0b3ceec9eb151272253a2fe497e"; sha256 = "1yybwzxbvn0lqb1br1fyg7763p2h117s6mkmywkl4l7qg9daa7ba"; }) + (fetchpatch2 { + name = "cstdint.patch"; + url = "https://git.alpinelinux.org/aports/plain/community/maplibre-gl-native/cstdint.patch?id=ae8edc6b02df388ef37a69c12a5df25dd8550238"; + hash = "sha256-o7wT/rk5vgwxEutAyIEAxwfKNxCoBtkhVcLjc7uTsYc="; + }) ]; postPatch = '' diff --git a/pkgs/development/libraries/mbedtls/2.nix b/pkgs/development/libraries/mbedtls/2.nix index 18793114c2190..97d62fad3ced1 100644 --- a/pkgs/development/libraries/mbedtls/2.nix +++ b/pkgs/development/libraries/mbedtls/2.nix @@ -1,6 +1,6 @@ { callPackage }: callPackage ./generic.nix { - version = "2.28.5"; - hash = "sha256-Gl4UQMSvAwYbOi2b/AUMz+zgkOl1o0UA2VveF/3ek8o="; + version = "2.28.7"; + hash = "sha256-JI0Frbz4HkPqrLQNrSIj1ikN8201h4kd1wTwyPotERw="; } diff --git a/pkgs/development/libraries/mbedtls/3.nix b/pkgs/development/libraries/mbedtls/3.nix index ca069cca1ead2..267349ac5d7be 100644 --- a/pkgs/development/libraries/mbedtls/3.nix +++ b/pkgs/development/libraries/mbedtls/3.nix @@ -1,6 +1,6 @@ { callPackage }: callPackage ./generic.nix { - version = "3.5.0"; - hash = "sha256-uHHQmaAmFS8Vd7PrAfRpK+aNi3pJ76XBC7rFWcd16NU="; + version = "3.5.2"; + hash = "sha256-lVGmnSYccNmRS6vfF/fDiny5cYRPc/wJBpgciFLPUvM="; } diff --git a/pkgs/development/libraries/mbedtls/generic.nix b/pkgs/development/libraries/mbedtls/generic.nix index 3ca0b491fb89b..2e79a593b7c31 100644 --- a/pkgs/development/libraries/mbedtls/generic.nix +++ b/pkgs/development/libraries/mbedtls/generic.nix @@ -52,7 +52,7 @@ stdenv.mkDerivation rec { homepage = "https://www.trustedfirmware.org/projects/mbed-tls/"; changelog = "https://github.com/Mbed-TLS/mbedtls/blob/${pname}-${version}/ChangeLog"; description = "Portable cryptographic and TLS library, formerly known as PolarSSL"; - license = licenses.asl20; + license = [ licenses.asl20 /* or */ licenses.gpl2Plus ]; platforms = platforms.all; maintainers = with maintainers; [ raphaelr ]; }; diff --git a/pkgs/development/libraries/md4c/default.nix b/pkgs/development/libraries/md4c/default.nix deleted file mode 100644 index 6504d99af3e93..0000000000000 --- a/pkgs/development/libraries/md4c/default.nix +++ /dev/null @@ -1,67 +0,0 @@ -{ lib -, stdenv -, fetchFromGitHub -, cmake -, pkg-config -}: - -stdenv.mkDerivation rec { - pname = "md4c"; - version = "0.4.8"; - - src = fetchFromGitHub { - owner = "mity"; - repo = pname; - rev = "release-${version}"; - hash = "sha256-+LObAD5JB8Vb4Rt4hTo1Z4ispxzfFkkXA2sw6TKB7Yo="; - }; - - patches = [ - # We set CMAKE_INSTALL_LIBDIR to the absolute path in $out, so - # prefix and exec_prefix cannot be $out, too - # Use CMake's _FULL_ variables instead of `prefix` concatenation. - ./fix-pkgconfig.patch - ]; - - nativeBuildInputs = [ - cmake - pkg-config - ]; - - meta = with lib; { - description = "Markdown parser made in C"; - longDescription = '' - MD4C is Markdown parser implementation in C, with the following features: - - - Compliance: Generally, MD4C aims to be compliant to the latest version - of CommonMark specification. Currently, we are fully compliant to - CommonMark 0.29. - - Extensions: MD4C supports some commonly requested and accepted - extensions. See below. - - Performance: MD4C is very fast. - - Compactness: MD4C parser is implemented in one source file and one - header file. There are no dependencies other than standard C library. - - Embedding: MD4C parser is easy to reuse in other projects, its API is - very straightforward: There is actually just one function, md_parse(). - - Push model: MD4C parses the complete document and calls few callback - functions provided by the application to inform it about a start/end of - every block, a start/end of every span, and with any textual contents. - - Portability: MD4C builds and works on Windows and POSIX-compliant - OSes. (It should be simple to make it run also on most other platforms, - at least as long as the platform provides C standard library, including - a heap memory management.) - - Encoding: MD4C by default expects UTF-8 encoding of the input - document. But it can be compiled to recognize ASCII-only control - characters (i.e. to disable all Unicode-specific code), or (on Windows) - to expect UTF-16 (i.e. what is on Windows commonly called just - "Unicode"). See more details below. - - Permissive license: MD4C is available under the MIT license. - ''; - homepage = "https://github.com/mity/md4c"; - license = licenses.mit; - maintainers = with maintainers; [ AndersonTorres ]; - mainProgram = "md2html"; - platforms = platforms.all; - }; -} -# TODO: enable tests (needs Python) diff --git a/pkgs/development/libraries/md4c/fix-pkgconfig.patch b/pkgs/development/libraries/md4c/fix-pkgconfig.patch deleted file mode 100644 index e0e9f3d96b2b4..0000000000000 --- a/pkgs/development/libraries/md4c/fix-pkgconfig.patch +++ /dev/null @@ -1,44 +0,0 @@ -From 0ab8f5a6ee305cf4edcebfdc7b9eb5f98302de75 Mon Sep 17 00:00:00 2001 -From: Leif Middelschulte <Leif.Middelschulte@klsmartin.com> -Date: Fri, 17 Sep 2021 16:16:17 +0200 -Subject: [PATCH] pc.in: use _FULL_ variable variants - -Nix' cmake packaging handler replaces the CMAKE_INSTALL_INCLUDEDIR -with the absolute path. Which break package -portability (i.e. `prefix`-usage). ---- - src/md4c-html.pc.in | 6 ++---- - src/md4c.pc.in | 6 ++---- - 2 files changed, 4 insertions(+), 8 deletions(-) - -diff --git a/src/md4c-html.pc.in b/src/md4c-html.pc.in -index 504bb52..fec7df4 100644 ---- a/src/md4c-html.pc.in -+++ b/src/md4c-html.pc.in -@@ -1,7 +1,5 @@ --prefix=@CMAKE_INSTALL_PREFIX@ --exec_prefix=@CMAKE_INSTALL_PREFIX@ --libdir=${exec_prefix}/@CMAKE_INSTALL_LIBDIR@ --includedir=${prefix}/@CMAKE_INSTALL_INCLUDEDIR@ -+libdir=@CMAKE_INSTALL_FULL_LIBDIR@ -+includedir=@CMAKE_INSTALL_FULL_INCLUDEDIR@ - - Name: @PROJECT_NAME@ HTML renderer - Description: Markdown to HTML converter library. -diff --git a/src/md4c.pc.in b/src/md4c.pc.in -index cd8842d..b5d81f8 100644 ---- a/src/md4c.pc.in -+++ b/src/md4c.pc.in -@@ -1,7 +1,5 @@ --prefix=@CMAKE_INSTALL_PREFIX@ --exec_prefix=@CMAKE_INSTALL_PREFIX@ --libdir=${exec_prefix}/@CMAKE_INSTALL_LIBDIR@ --includedir=${prefix}/@CMAKE_INSTALL_INCLUDEDIR@ -+libdir=@CMAKE_INSTALL_FULL_LIBDIR@ -+includedir=@CMAKE_INSTALL_FULL_INCLUDEDIR@ - - Name: @PROJECT_NAME@ - Description: Markdown parser library with a SAX-like callback-based interface. --- -2.31.0 - diff --git a/pkgs/development/libraries/mdk-sdk/default.nix b/pkgs/development/libraries/mdk-sdk/default.nix index 1bf8992f948c7..711833cbda8a5 100644 --- a/pkgs/development/libraries/mdk-sdk/default.nix +++ b/pkgs/development/libraries/mdk-sdk/default.nix @@ -5,11 +5,11 @@ stdenv.mkDerivation rec { pname = "mdk-sdk"; - version = "0.23.1"; + version = "0.24.0"; src = fetchurl { url = "https://github.com/wang-bin/mdk-sdk/releases/download/v${version}/mdk-sdk-linux-x64.tar.xz"; - hash = "sha256-qC6FL76MJZ2XrrYePQFpWk5VPLTeoRd5ns93AK3iZjw="; + hash = "sha256-kRihFM2+vPg6OAL4ARz0dLLUvAFvZsbrCu5TBI6b2RI="; }; nativeBuildInputs = [ autoPatchelfHook ]; diff --git a/pkgs/development/libraries/mesa/default.nix b/pkgs/development/libraries/mesa/default.nix index cb9d19c30c843..970081741b14b 100644 --- a/pkgs/development/libraries/mesa/default.nix +++ b/pkgs/development/libraries/mesa/default.nix @@ -60,6 +60,7 @@ , vulkanLayers ? lib.optionals (!stdenv.isDarwin) [ "device-select" "overlay" "intel-nullhw" ] # No Vulkan support on Darwin , OpenGL, Xplugin , withValgrind ? lib.meta.availableOn stdenv.hostPlatform valgrind-light && !valgrind-light.meta.broken, valgrind-light +, withLibunwind ? lib.meta.availableOn stdenv.hostPlatform libunwind , enableGalliumNine ? stdenv.isLinux , enableOSMesa ? stdenv.isLinux , enableOpenCL ? stdenv.isLinux && stdenv.isx86_64 @@ -217,6 +218,8 @@ self = stdenv.mkDerivation { "-Dclang-libdir=${llvmPackages.clang-unwrapped.lib}/lib" ] ++ lib.optionals (!withValgrind) [ "-Dvalgrind=disabled" + ] ++ lib.optionals (!withLibunwind) [ + "-Dlibunwind=disabled" ] ++ lib.optional enablePatentEncumberedCodecs "-Dvideo-codecs=h264dec,h264enc,h265dec,h265enc,vc1dec" ++ lib.optional (vulkanLayers != []) "-D vulkan-layers=${builtins.concatStringsSep "," vulkanLayers}"; @@ -226,7 +229,10 @@ self = stdenv.mkDerivation { libX11 libXext libxcb libXt libXfixes libxshmfence libXrandr libffi libvdpau libelf libXvMC libpthreadstubs openssl /*or another sha1 provider*/ - zstd libunwind + zstd + ] ++ lib.optionals withLibunwind [ + libunwind + ] ++ [ python3Packages.python # for shebang ] ++ lib.optionals haveWayland [ wayland wayland-protocols ] ++ lib.optionals stdenv.isLinux [ libomxil-bellagio libva-minimal udev lm_sensors ] diff --git a/pkgs/development/libraries/mpdecimal/default.nix b/pkgs/development/libraries/mpdecimal/default.nix index 3a2e4b1fe7d09..514c61ffcb0c0 100644 --- a/pkgs/development/libraries/mpdecimal/default.nix +++ b/pkgs/development/libraries/mpdecimal/default.nix @@ -2,12 +2,12 @@ stdenv.mkDerivation rec { pname = "mpdecimal"; - version = "2.5.1"; + version = "4.0.0"; outputs = [ "out" "cxx" "doc" "dev" ]; src = fetchurl { url = "https://www.bytereef.org/software/mpdecimal/releases/mpdecimal-${version}.tar.gz"; - hash = "sha256-n5zUwEH5m1xJ/7e1nZ8S2VtoPYhYVgiqVqYwdmeysh8="; + hash = "sha256-lCRFwyRbInMP1Bpnp8XCMdEcsbmTa5wPdjNPt9C0Row="; }; configureFlags = [ "LD=${stdenv.cc.targetPrefix}cc" ]; diff --git a/pkgs/development/libraries/mpich/default.nix b/pkgs/development/libraries/mpich/default.nix index 622ee233f9c4a..d3bc279506f92 100644 --- a/pkgs/development/libraries/mpich/default.nix +++ b/pkgs/development/libraries/mpich/default.nix @@ -3,10 +3,19 @@ # either libfabric or ucx work for ch4backend on linux. On darwin, neither of # these libraries currently build so this argument is ignored on Darwin. , ch4backend -# Process manager to build -, withPm ? "hydra:gforker" +# Process managers to build (`--with-pm`), +# cf. https://github.com/pmodels/mpich/blob/b80a6d7c24defe7cdf6c57c52430f8075a0a41d6/README.vin#L562-L586 +, withPm ? [ "hydra" "gforker" ] +, pmix +# PMIX support is likely incompatible with process managers (`--with-pm`) +# https://github.com/NixOS/nixpkgs/pull/274804#discussion_r1432601476 +, pmixSupport ? false } : +let + withPmStr = if withPm != [ ] then builtins.concatStringsSep ":" withPm else "no"; +in + assert (ch4backend.pname == "ucx" || ch4backend.pname == "libfabric"); stdenv.mkDerivation rec { @@ -22,18 +31,21 @@ stdenv.mkDerivation rec { configureFlags = [ "--enable-shared" - "--enable-sharedlib" - "--with-pm=${withPm}" + "--with-pm=${withPmStr}" ] ++ lib.optionals (lib.versionAtLeast gfortran.version "10") [ "FFLAGS=-fallow-argument-mismatch" # https://github.com/pmodels/mpich/issues/4300 "FCFLAGS=-fallow-argument-mismatch" + ] ++ lib.optionals pmixSupport [ + "--with-pmix" ]; enableParallelBuilding = true; nativeBuildInputs = [ gfortran python3 ]; buildInputs = [ perl openssh hwloc ] - ++ lib.optional (!stdenv.isDarwin) ch4backend; + ++ lib.optional (!stdenv.isDarwin) ch4backend + ++ lib.optional pmixSupport pmix; + doCheck = true; @@ -45,6 +57,9 @@ stdenv.mkDerivation rec { ''; meta = with lib; { + # As far as we know, --with-pmix silently disables all of `--with-pm` + broken = pmixSupport && withPm != [ ]; + description = "Implementation of the Message Passing Interface (MPI) standard"; longDescription = '' diff --git a/pkgs/development/libraries/muparser/default.nix b/pkgs/development/libraries/muparser/default.nix deleted file mode 100644 index 910a251349897..0000000000000 --- a/pkgs/development/libraries/muparser/default.nix +++ /dev/null @@ -1,22 +0,0 @@ -{lib, stdenv, fetchurl, unzip, setfile}: - -stdenv.mkDerivation rec { - pname = "muparser"; - version = "2.2.3"; - url-version = lib.replaceStrings ["."] ["_"] version; - - src = fetchurl { - url = "mirror://sourceforge/muparser/muparser_v${url-version}.zip"; - sha256 = "00l92k231yb49wijzkspa2l58mapn6vh2dlxnlg0pawjjfv33s6z"; - }; - - nativeBuildInputs = [ unzip ]; - buildInputs = lib.optionals stdenv.isDarwin [setfile]; - - meta = { - homepage = "http://muparser.sourceforge.net"; - description = "An extensible high performance math expression parser library written in C++"; - license = lib.licenses.mit; - platforms = lib.platforms.linux ++ lib.platforms.darwin; - }; -} diff --git a/pkgs/development/libraries/nanoflann/default.nix b/pkgs/development/libraries/nanoflann/default.nix index bfd4b87dc07c2..b740e83f4c251 100644 --- a/pkgs/development/libraries/nanoflann/default.nix +++ b/pkgs/development/libraries/nanoflann/default.nix @@ -6,20 +6,20 @@ }: stdenv.mkDerivation (finalAttrs: { - version = "1.5.3"; + version = "1.5.4"; pname = "nanoflann"; src = fetchFromGitHub { owner = "jlblancoc"; repo = "nanoflann"; rev = "v${finalAttrs.version}"; - hash = "sha256-cTi3Q+SUSNQkSgi2K7nPqfqEQFMkbchbn2+pE2ol9xQ="; + hash = "sha256-7Vt/x9jHRqtVTv0MbHxIwd1/cTUB4aIgOiI+7cz0iu0="; }; nativeBuildInputs = [ cmake ]; cmakeFlags = [ - "-DBUILD_EXAMPLES=${if buildExamples then "ON" else "OFF"}" + (lib.cmakeBool "BUILD_EXAMPLES" buildExamples) ]; doCheck = true; diff --git a/pkgs/development/libraries/ncnn/cmakelists.patch b/pkgs/development/libraries/ncnn/cmakelists.patch index bdb3063acec4e..a43d7b0c4b725 100644 --- a/pkgs/development/libraries/ncnn/cmakelists.patch +++ b/pkgs/development/libraries/ncnn/cmakelists.patch @@ -1,18 +1,27 @@ diff --git a/CMakeLists.txt b/CMakeLists.txt -index c453d23e..66b4aa24 100644 +index 785e2cd..459024d 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt -@@ -560,6 +560,8 @@ if(NCNN_VULKAN) - message(WARNING "GLSLANG_TARGET_DIR must be defined! NCNN_SYSTEM_GLSLANG will be turned off.") +@@ -589,7 +589,8 @@ endif() + if(NCNN_VULKAN) + if(NCNN_SYSTEM_GLSLANG) + find_package(Threads) +- find_package(glslang QUIET) ++ find_package(SPIRV-Tools-opt REQUIRED) ++ find_package(glslang REQUIRED) + if(glslang_FOUND) + add_library(glslang ALIAS glslang::glslang) + add_library(SPIRV ALIAS glslang::SPIRV) +@@ -601,7 +602,6 @@ if(NCNN_VULKAN) set(NCNN_SYSTEM_GLSLANG OFF) else() -+ include("${GLSLANG_TARGET_DIR}/SPIRV-Tools/SPIRV-ToolsTarget.cmake") -+ include("${GLSLANG_TARGET_DIR}/SPIRV-Tools-opt/SPIRV-Tools-optTargets.cmake") include("${GLSLANG_TARGET_DIR}/OSDependentTargets.cmake") - include("${GLSLANG_TARGET_DIR}/OGLCompilerTargets.cmake") +- include("${GLSLANG_TARGET_DIR}/OGLCompilerTargets.cmake") if(EXISTS "${GLSLANG_TARGET_DIR}/HLSLTargets.cmake") + # hlsl support can be optional + include("${GLSLANG_TARGET_DIR}/HLSLTargets.cmake") diff --git a/src/ncnn.pc.in b/src/ncnn.pc.in -index b580fcee..be2becd0 100644 +index b580fce..be2becd 100644 --- a/src/ncnn.pc.in +++ b/src/ncnn.pc.in @@ -1,6 +1,6 @@ diff --git a/pkgs/development/libraries/ncnn/default.nix b/pkgs/development/libraries/ncnn/default.nix index 69967eae160d2..71b4bbc8fd423 100644 --- a/pkgs/development/libraries/ncnn/default.nix +++ b/pkgs/development/libraries/ncnn/default.nix @@ -11,13 +11,13 @@ stdenv.mkDerivation rec { pname = "ncnn"; - version = "20231027"; + version = "20240102"; src = fetchFromGitHub { owner = "Tencent"; repo = pname; rev = version; - sha256 = "sha256-ak/5QTOptg5M2I+3olnrBK6JZ01haIE6oh+sagEboAc="; + hash = "sha256-kk70oLY+2QJOkyYq10whLRMxBuibQMWMOBA9dcbKf/I="; }; patches = [ @@ -33,8 +33,6 @@ stdenv.mkDerivation rec { "-DNCNN_BUILD_TOOLS=0" "-DNCNN_SYSTEM_GLSLANG=1" "-DNCNN_PYTHON=0" # Should be an attribute - - "-DGLSLANG_TARGET_DIR=${glslang}/lib/cmake" ]; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/libraries/ndi/default.nix b/pkgs/development/libraries/ndi/default.nix index 9cd0d186302ba..06eb1b8150691 100644 --- a/pkgs/development/libraries/ndi/default.nix +++ b/pkgs/development/libraries/ndi/default.nix @@ -2,6 +2,12 @@ let versionJSON = lib.importJSON ./version.json; + ndiPlatform = + if stdenv.isAarch64 then "aarch64-rpi4-linux-gnueabi" + else if stdenv.isAarch32 then "arm-rpi2-linux-gnueabihf" + else if stdenv.isx86_64 then "x86_64-linux-gnu" + else if stdenv.isi686 then "i686-linux-gnu" + else throw "unsupported platform for NDI SDK"; in stdenv.mkDerivation rec { pname = "ndi"; @@ -35,12 +41,13 @@ stdenv.mkDerivation rec { installPhase = '' mkdir $out - mv bin/x86_64-linux-gnu $out/bin + mv bin/${ndiPlatform} $out/bin for i in $out/bin/*; do + if [ -L "$i" ]; then continue; fi patchelf --set-interpreter "$(cat $NIX_CC/nix-support/dynamic-linker)" "$i" done patchelf --set-rpath "${avahi}/lib:${stdenv.cc.libc}/lib" $out/bin/ndi-record - mv lib/x86_64-linux-gnu $out/lib + mv lib/${ndiPlatform} $out/lib for i in $out/lib/*; do if [ -L "$i" ]; then continue; fi patchelf --set-rpath "${avahi}/lib:${stdenv.cc.libc}/lib" "$i" @@ -48,7 +55,6 @@ stdenv.mkDerivation rec { mv include examples $out/ mkdir -p $out/share/doc/${pname}-${version} mv licenses $out/share/doc/${pname}-${version}/licenses - mv logos $out/share/doc/${pname}-${version}/logos mv documentation/* $out/share/doc/${pname}-${version}/ ''; @@ -61,9 +67,9 @@ stdenv.mkDerivation rec { passthru.updateScript = ./update.py; meta = with lib; { - homepage = "https://ndi.tv/sdk/"; + homepage = "https://ndi.video/ndi-sdk/"; description = "NDI Software Developer Kit"; - platforms = ["x86_64-linux"]; + platforms = ["x86_64-linux" "i686-linux" "aarch64-linux" "armv7l-linux"]; hydraPlatforms = []; sourceProvenance = with sourceTypes; [ binaryNativeCode ]; license = licenses.unfree; diff --git a/pkgs/development/libraries/ndi/version.json b/pkgs/development/libraries/ndi/version.json index d751aa79e431c..686abdb2c2b76 100644 --- a/pkgs/development/libraries/ndi/version.json +++ b/pkgs/development/libraries/ndi/version.json @@ -1 +1 @@ -{"hash": "sha256:70e04c2e7a629a9854de2727e0f978175b7a4ec6cf4cd9799a22390862f6fa27", "version": "5.5.2"} +{"hash": "sha256:4ff4b92f2c5f42d234aa7d142e2de7e9b045c72b46ad5149a459d48efd9218de", "version": "5.6.0"} diff --git a/pkgs/development/libraries/ndpi/default.nix b/pkgs/development/libraries/ndpi/default.nix index d9d8f5895a2d3..94e249425717b 100644 --- a/pkgs/development/libraries/ndpi/default.nix +++ b/pkgs/development/libraries/ndpi/default.nix @@ -1,7 +1,6 @@ { lib , stdenv -, autoconf -, automake +, autoreconfHook , fetchFromGitHub , json_c , libpcap @@ -10,22 +9,19 @@ , which }: -stdenv.mkDerivation rec { +stdenv.mkDerivation (finalAttrs: { pname = "ndpi"; - version = "4.6"; + version = "4.8"; src = fetchFromGitHub { owner = "ntop"; repo = "nDPI"; - rev = "refs/tags/${version}"; - hash = "sha256-S0lVh5FZewPbYG/1ikI2RroCSC7OI8Xmfeq73hYCHnY="; + rev = "refs/tags/${finalAttrs.version}"; + hash = "sha256-V3hRDQ141pbR5jJK2QlP7BF2CEbuzqIvo+iTx3EGhRY="; }; - configureScript = "./autogen.sh"; - nativeBuildInputs = [ - autoconf - automake + autoreconfHook libtool pkg-config which @@ -42,10 +38,10 @@ stdenv.mkDerivation rec { nDPI is a library for deep-packet inspection based on OpenDPI. ''; homepage = "https://www.ntop.org/products/deep-packet-inspection/ndpi/"; - changelog = "https://github.com/ntop/nDPI/blob/${version}/CHANGELOG.md"; + changelog = "https://github.com/ntop/nDPI/blob/${finalAttrs.version}/CHANGELOG.md"; license = with licenses; [ lgpl3Plus bsd3 ]; maintainers = with maintainers; [ takikawa ]; mainProgram = "ndpiReader"; platforms = with platforms; unix; }; -} +}) diff --git a/pkgs/development/libraries/neatvnc/default.nix b/pkgs/development/libraries/neatvnc/default.nix index f5efbdcc082ef..281689c60b679 100644 --- a/pkgs/development/libraries/neatvnc/default.nix +++ b/pkgs/development/libraries/neatvnc/default.nix @@ -15,13 +15,13 @@ stdenv.mkDerivation rec { pname = "neatvnc"; - version = "0.7.1"; + version = "0.7.2"; src = fetchFromGitHub { owner = "any1"; repo = pname; rev = "v${version}"; - sha256 = "sha256-bRlz5RW+NUSTgzjRM9alZjSrzmF8/7p4IIXqK/HEcJo="; + sha256 = "sha256-S2LMD15MYd/t/Z8B1OQ0hVrZQLR6Gf4LB45mhmDwblg="; }; strictDeps = true; diff --git a/pkgs/development/libraries/ngtcp2/default.nix b/pkgs/development/libraries/ngtcp2/default.nix index add6771e1bb9a..948fb0c071f43 100644 --- a/pkgs/development/libraries/ngtcp2/default.nix +++ b/pkgs/development/libraries/ngtcp2/default.nix @@ -8,13 +8,13 @@ stdenv.mkDerivation rec { pname = "ngtcp2"; - version = "1.1.0"; + version = "1.2.0"; src = fetchFromGitHub { owner = "ngtcp2"; repo = pname; rev = "v${version}"; - hash = "sha256-z6lvtfO5XL/bZgbE+Sak+32QzjEhAdOnkpIO731h+bk="; + hash = "sha256-/lHsHkSySKyZZdjTTYCo0a6cwcMcbOWNvAEcO36/kEw="; }; outputs = [ "out" "dev" "doc" ]; diff --git a/pkgs/development/libraries/ngtcp2/gnutls.nix b/pkgs/development/libraries/ngtcp2/gnutls.nix index f4760ea9e669a..f8b31b703fcfb 100644 --- a/pkgs/development/libraries/ngtcp2/gnutls.nix +++ b/pkgs/development/libraries/ngtcp2/gnutls.nix @@ -6,13 +6,13 @@ stdenv.mkDerivation rec { pname = "ngtcp2"; - version = "1.1.0"; + version = "1.2.0"; src = fetchFromGitHub { owner = "ngtcp2"; repo = "ngtcp2"; rev = "v${version}"; - hash = "sha256-z6lvtfO5XL/bZgbE+Sak+32QzjEhAdOnkpIO731h+bk="; + hash = "sha256-/lHsHkSySKyZZdjTTYCo0a6cwcMcbOWNvAEcO36/kEw="; }; outputs = [ "out" "dev" ]; diff --git a/pkgs/development/libraries/nss/latest.nix b/pkgs/development/libraries/nss/latest.nix index 21c96d8bc9233..43cb876fa8846 100644 --- a/pkgs/development/libraries/nss/latest.nix +++ b/pkgs/development/libraries/nss/latest.nix @@ -5,6 +5,6 @@ # Example: nix-shell ./maintainers/scripts/update.nix --argstr package cacert import ./generic.nix { - version = "3.96.1"; - hash = "sha256-HhN3wZEdi9R/KD0nl3+et+94LBJjGLDVqDX8v5qGrqQ="; + version = "3.97"; + hash = "sha256-d26v8a+5EkQ6cFg5SZirT4L22AxfIteiUx4I42msyqw="; } diff --git a/pkgs/development/libraries/ogre/default.nix b/pkgs/development/libraries/ogre/default.nix index 83355c235f31a..f6cd2987aa0da 100644 --- a/pkgs/development/libraries/ogre/default.nix +++ b/pkgs/development/libraries/ogre/default.nix @@ -6,7 +6,6 @@ , unzip , SDL2 , boost -, freeimage , freetype , libpng , ois @@ -55,7 +54,6 @@ let buildInputs = [ SDL2 boost - freeimage freetype libpng ois diff --git a/pkgs/development/libraries/opencomposite/default.nix b/pkgs/development/libraries/opencomposite/default.nix index 05d09fc1178e4..b3b00e83142d8 100644 --- a/pkgs/development/libraries/opencomposite/default.nix +++ b/pkgs/development/libraries/opencomposite/default.nix @@ -17,13 +17,13 @@ stdenv.mkDerivation { pname = "opencomposite"; - version = "unstable-2023-09-11"; + version = "unstable-2024-01-14"; src = fetchFromGitLab { owner = "znixian"; repo = "OpenOVR"; - rev = "cca18158a4b6921df54e84a3b23ff459f76a2bde"; - hash = "sha256-VREApt4juz283aJVLZoBbqg01PNs4XBxmpr/UIMlaK8="; + rev = "57ecdd2675fd1baeab7d9cf55b6e827f19a65530"; + hash = "sha256-OOJNQzFRPSdLrIaDrGke12ubIiSjdD/vvHBz0WjGf3c="; }; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/opencv/3.x.nix b/pkgs/development/libraries/opencv/3.x.nix index e3f458d0d7339..377ebb3acdb5f 100644 --- a/pkgs/development/libraries/opencv/3.x.nix +++ b/pkgs/development/libraries/opencv/3.x.nix @@ -10,7 +10,7 @@ , enablePNG ? true, libpng , enableTIFF ? true, libtiff , enableWebP ? true, libwebp -, enableEXR ? !stdenv.isDarwin, openexr, ilmbase +, enableEXR ? !stdenv.isDarwin, openexr_3 , enableEigen ? true, eigen , enableOpenblas ? true, openblas, blas, lapack , enableContrib ? true @@ -194,7 +194,7 @@ stdenv.mkDerivation { ++ lib.optional enablePNG libpng ++ lib.optional enableTIFF libtiff ++ lib.optional enableWebP libwebp - ++ lib.optionals enableEXR [ openexr ilmbase ] + ++ lib.optionals enableEXR [ openexr_3 ] ++ lib.optional enableFfmpeg ffmpeg ++ lib.optionals (enableFfmpeg && stdenv.isDarwin) [ VideoDecodeAcceleration bzip2 ] @@ -219,8 +219,6 @@ stdenv.mkDerivation { nativeBuildInputs = [ cmake pkg-config unzip ]; - env.NIX_CFLAGS_COMPILE = lib.optionalString enableEXR "-I${ilmbase.dev}/include/OpenEXR"; - # Configure can't find the library without this. OpenBLAS_HOME = lib.optionalString enableOpenblas openblas; diff --git a/pkgs/development/libraries/opendht/default.nix b/pkgs/development/libraries/opendht/default.nix index e972fa3fb14f9..7209c2d2e2535 100644 --- a/pkgs/development/libraries/opendht/default.nix +++ b/pkgs/development/libraries/opendht/default.nix @@ -7,7 +7,7 @@ , asio , nettle , gnutls -, msgpack +, msgpack-cxx , readline , libargon2 , jsoncpp @@ -40,7 +40,7 @@ stdenv.mkDerivation rec { fmt nettle gnutls - msgpack + msgpack-cxx readline libargon2 ] ++ lib.optionals enableProxyServerAndClient [ diff --git a/pkgs/development/libraries/openexr/default.nix b/pkgs/development/libraries/openexr/default.nix index 1a135fa6d4a80..6d45ca33e982c 100644 --- a/pkgs/development/libraries/openexr/default.nix +++ b/pkgs/development/libraries/openexr/default.nix @@ -9,7 +9,7 @@ stdenv.mkDerivation rec { pname = "openexr"; - version = "2.5.8"; + version = "2.5.10"; outputs = [ "bin" "dev" "out" "doc" ]; @@ -17,7 +17,7 @@ stdenv.mkDerivation rec { owner = "AcademySoftwareFoundation"; repo = "openexr"; rev = "v${version}"; - sha256 = "sha256-N7XdDaDsYdx4TXvHplQDTvhHNUmW5rntdaTKua4C0es="; + hash = "sha256-xdC+T79ZQBx/XhuIXtP93Roj0N9lF+E65ReEKQ4kIsg="; }; patches = [ @@ -36,8 +36,7 @@ stdenv.mkDerivation rec { sha256 = "sha256-DrpldpNgN5pWKzIuuPIrynGX3EpP8YhJlu+lLfNFGxQ="; }) - # Backport gcc-13 fix: - # https://github.com/AcademySoftwareFoundation/openexr/pull/1264 + # GCC 13 fixes ./gcc-13.patch ]; diff --git a/pkgs/development/libraries/openexr/gcc-13.patch b/pkgs/development/libraries/openexr/gcc-13.patch index d508b6028f76d..6264a8df24331 100644 --- a/pkgs/development/libraries/openexr/gcc-13.patch +++ b/pkgs/development/libraries/openexr/gcc-13.patch @@ -1,33 +1,25 @@ -https://github.com/AcademySoftwareFoundation/openexr/pull/1264 -https://github.com/AcademySoftwareFoundation/openexr/commit/d0088a3c6943a9a53fc24e29885414d082d531fe.patch +From 8aa103fe6e815514990e59708468eabc36f7f332 Mon Sep 17 00:00:00 2001 +From: =?UTF-8?q?=C3=A9clairevoyant?= + <848000+eclairevoyant@users.noreply.github.com> +Date: Fri, 5 Jan 2024 18:12:16 -0500 +Subject: [PATCH] gcc13 ---- a/OpenEXR/IlmImf/ImfDwaCompressor.cpp -+++ b/OpenEXR/IlmImf/ImfDwaCompressor.cpp -@@ -159,6 +159,7 @@ - #include <limits> - - #include <cstddef> -+#include <cstdint> - - - // Windows specific addition to prevent the indirect import of the redefined min/max macros ---- a/OpenEXR/IlmImf/ImfHuf.cpp -+++ b/OpenEXR/IlmImf/ImfHuf.cpp -@@ -53,6 +53,7 @@ - #include <cstring> - #include <cassert> +--- + OpenEXR/IlmImf/ImfTiledMisc.cpp | 1 + + 1 file changed, 1 insertion(+) + +diff --git a/OpenEXR/IlmImf/ImfTiledMisc.cpp b/OpenEXR/IlmImf/ImfTiledMisc.cpp +index 06ea3144..749537d4 100644 +--- a/OpenEXR/IlmImf/ImfTiledMisc.cpp ++++ b/OpenEXR/IlmImf/ImfTiledMisc.cpp +@@ -46,6 +46,7 @@ + #include <ImfTileDescription.h> #include <algorithm> + #include <limits> +#include <cstdint> - - using namespace std; ---- a/OpenEXR/IlmImf/ImfMisc.cpp -+++ b/OpenEXR/IlmImf/ImfMisc.cpp -@@ -52,6 +52,7 @@ - #include <ImfConvert.h> - #include <ImfPartType.h> - #include <ImfTileDescription.h> -+#include <cstdint> #include "ImfNamespace.h" - OPENEXR_IMF_INTERNAL_NAMESPACE_SOURCE_ENTER +-- +2.42.0 + diff --git a/pkgs/development/libraries/openimageio/default.nix b/pkgs/development/libraries/openimageio/default.nix index f2e98e0d34b6e..7d2e78794d8a0 100644 --- a/pkgs/development/libraries/openimageio/default.nix +++ b/pkgs/development/libraries/openimageio/default.nix @@ -3,7 +3,6 @@ , boost , cmake , giflib -, ilmbase , libjpeg , libpng , libtiff @@ -41,7 +40,6 @@ stdenv.mkDerivation rec { buildInputs = [ boost giflib - ilmbase libjpeg libpng libtiff diff --git a/pkgs/development/libraries/openturns/default.nix b/pkgs/development/libraries/openturns/default.nix index 751f98aae6e5c..a2fa42caea609 100644 --- a/pkgs/development/libraries/openturns/default.nix +++ b/pkgs/development/libraries/openturns/default.nix @@ -26,13 +26,13 @@ stdenv.mkDerivation rec { pname = "openturns"; - version = "1.21.2"; + version = "1.22"; src = fetchFromGitHub { owner = "openturns"; repo = "openturns"; rev = "v${version}"; - sha256 = "sha256-Zq+Z3jLjdba3566H4RdwztqbRRID5K5yHvoGmgzq8QM="; + sha256 = "sha256-ku3/mPoa1YJVJB99R/kWlOubIO+OZAiKfPqS/DrtJQk="; }; nativeBuildInputs = [ cmake ] ++ lib.optional enablePython python3Packages.sphinx; diff --git a/pkgs/development/libraries/openvdb/default.nix b/pkgs/development/libraries/openvdb/default.nix index 214149edad94b..c5397b259a30a 100644 --- a/pkgs/development/libraries/openvdb/default.nix +++ b/pkgs/development/libraries/openvdb/default.nix @@ -1,9 +1,9 @@ -{ lib, stdenv, fetchFromGitHub, cmake, openexr, boost, jemalloc, c-blosc, ilmbase, tbb }: +{ lib, stdenv, fetchFromGitHub, cmake, boost, jemalloc, c-blosc, tbb, zlib }: stdenv.mkDerivation rec { pname = "openvdb"; - version = "10.0.1"; + version = "11.0.0"; outputs = [ "out" "dev" ]; @@ -11,15 +11,20 @@ stdenv.mkDerivation rec owner = "AcademySoftwareFoundation"; repo = "openvdb"; rev = "v${version}"; - sha256 = "sha256-kaf5gpGYVWinmnRwR/IafE1SJcwmP2psfe/UZdtH1Og="; + sha256 = "sha256-wDDjX0nKZ4/DIbEX33PoxR43dJDj2NF3fm+Egug62GQ="; }; nativeBuildInputs = [ cmake ]; - buildInputs = [ openexr boost tbb jemalloc c-blosc ilmbase ]; + buildInputs = [ boost tbb jemalloc c-blosc zlib ]; cmakeFlags = [ "-DOPENVDB_CORE_STATIC=OFF" ]; + # error: aligned deallocation function of type 'void (void *, std::align_val_t) noexcept' is only available on macOS 10.13 or newer + env = lib.optionalAttrs (stdenv.isDarwin && lib.versionOlder stdenv.hostPlatform.darwinMinVersion "10.13" && lib.versionAtLeast tbb.version "2021.8.0") { + NIX_CFLAGS_COMPILE = "-faligned-allocation"; + }; + postFixup = '' substituteInPlace $dev/lib/cmake/OpenVDB/FindOpenVDB.cmake \ --replace \''${OPENVDB_LIBRARYDIR} $out/lib \ diff --git a/pkgs/development/libraries/openvino/cmake.patch b/pkgs/development/libraries/openvino/cmake.patch deleted file mode 100644 index 0918baba918f3..0000000000000 --- a/pkgs/development/libraries/openvino/cmake.patch +++ /dev/null @@ -1,31 +0,0 @@ -diff --git a/cmake/developer_package/linux_name.cmake b/cmake/developer_package/linux_name.cmake -index 3e8c775770..2d5e00fb8b 100644 ---- a/cmake/developer_package/linux_name.cmake -+++ b/cmake/developer_package/linux_name.cmake -@@ -6,25 +6,7 @@ include(target_flags) - - if(LINUX) - function(get_linux_name res_var) -- if(EXISTS "/etc/lsb-release") -- # linux version detection using cat /etc/lsb-release -- file(READ "/etc/lsb-release" release_data) -- set(name_regex "DISTRIB_ID=([^ \n]*)\n") -- set(version_regex "DISTRIB_RELEASE=([0-9]+(\\.[0-9]+)?)") -- else() -- execute_process(COMMAND find -L /etc/ -maxdepth 1 -type f -name *-release -exec cat {} \; -- OUTPUT_VARIABLE release_data -- RESULT_VARIABLE result) -- string(REPLACE "Red Hat" "CentOS" release_data "${release_data}") -- set(name_regex "NAME=\"([^ \"\n]*).*\"\n") -- set(version_regex "VERSION=\"([0-9]+(\\.[0-9]+)?)[^\n]*\"") -- endif() -- -- string(REGEX MATCH ${name_regex} name ${release_data}) -- set(os_name ${CMAKE_MATCH_1}) -- -- string(REGEX MATCH ${version_regex} version ${release_data}) -- set(os_name "${os_name} ${CMAKE_MATCH_1}") -+ set(os_name "NixOS @version@") - - if(os_name) - set(${res_var} ${os_name} PARENT_SCOPE) diff --git a/pkgs/development/libraries/openvino/default.nix b/pkgs/development/libraries/openvino/default.nix index 26fac012948d4..186e1048823aa 100644 --- a/pkgs/development/libraries/openvino/default.nix +++ b/pkgs/development/libraries/openvino/default.nix @@ -1,8 +1,8 @@ { lib -, stdenv +, gcc12Stdenv , fetchFromGitHub +, fetchpatch2 , fetchurl -, substituteAll , cudaSupport ? opencv.cudaSupport or false # build @@ -14,45 +14,62 @@ , pkg-config , python , shellcheck +, sphinx # runtime +, flatbuffers , libusb1 , libxml2 , ocl-icd , opencv , protobuf , pugixml +, snappy , tbb , cudaPackages }: let + inherit (lib) + cmakeBool + ; + + stdenv = gcc12Stdenv; + # See GNA_VERSION in cmake/dependencies.cmake - gna_version = "03.05.00.1906"; + gna_version = "03.05.00.2116"; gna = fetchurl { url = "https://storage.openvinotoolkit.org/dependencies/gna/gna_${gna_version}.zip"; - hash = "sha256-SlvobZwCaw4Qr6wqV/x8mddisw49UGq7OjOA+8/icm4="; + hash = "sha256-lgNQVncCvaFydqxMBg11JPt8587XhQBL2GHIH/K/4sU="; }; tbbbind_version = "2_5"; tbbbind = fetchurl { - url = "https://storage.openvinotoolkit.org/dependencies/thirdparty/linux/tbbbind_${tbbbind_version}_static_lin_v3.tgz"; - hash = "sha256-053rJiwGmBteLS48WT6fyb5izk/rkd1OZI6SdTZZprM="; + url = "https://storage.openvinotoolkit.org/dependencies/thirdparty/linux/tbbbind_${tbbbind_version}_static_lin_v4.tgz"; + hash = "sha256-Tr8wJGUweV8Gb7lhbmcHxrF756ZdKdNRi1eKdp3VTuo="; }; in stdenv.mkDerivation rec { pname = "openvino"; - version = "2023.0.0"; + version = "2023.3.0"; src = fetchFromGitHub { owner = "openvinotoolkit"; repo = "openvino"; rev = "refs/tags/${version}"; fetchSubmodules = true; - hash = "sha256-z88SgAZ0UX9X7BhBA7/NU/UhVLltb6ANKolruU8YiZQ="; + hash = "sha256-dXlQhar5gz+1iLmDYXUY0jZKh4rJ+khRpoZQphJXfcU="; }; + patches = [ + (fetchpatch2 { + name = "enable-js-toggle.patch"; + url = "https://github.com/openvinotoolkit/openvino/commit/0a8f1383826d949c497fe3d05fef9ad2b662fa7e.patch"; + hash = "sha256-mQYunouPo3tRlD5Yp4EUth324ccNnVX8zmjPHvJBYKw="; + }) + ]; + outputs = [ "out" "python" @@ -71,17 +88,11 @@ stdenv.mkDerivation rec { setuptools ])) shellcheck + sphinx ] ++ lib.optionals cudaSupport [ cudaPackages.cuda_nvcc ]; - patches = [ - (substituteAll { - src = ./cmake.patch; - inherit (lib) version; - }) - ]; - postPatch = '' mkdir -p temp/gna_${gna_version} pushd temp/ @@ -100,30 +111,35 @@ stdenv.mkDerivation rec { dontUseCmakeBuildDir = true; cmakeFlags = [ - "-DCMAKE_PREFIX_PATH:PATH=${placeholder "out"}" + "-Wno-dev" "-DCMAKE_MODULE_PATH:PATH=${placeholder "out"}/lib/cmake" - "-DENABLE_LTO:BOOL=ON" - # protobuf - "-DENABLE_SYSTEM_PROTOBUF:BOOL=OFF" - "-DProtobuf_LIBRARIES=${protobuf}/lib/libprotobuf${stdenv.hostPlatform.extensions.sharedLibrary}" - # tbb - "-DENABLE_SYSTEM_TBB:BOOL=ON" - # opencv - "-DENABLE_OPENCV:BOOL=ON" + "-DCMAKE_PREFIX_PATH:PATH=${placeholder "out"}" "-DOpenCV_DIR=${opencv}/lib/cmake/opencv4/" - # pugixml - "-DENABLE_SYSTEM_PUGIXML:BOOL=ON" - # onednn - "-DENABLE_ONEDNN_FOR_GPU:BOOL=OFF" - # intel gna - "-DENABLE_INTEL_GNA:BOOL=ON" - # python - "-DENABLE_PYTHON:BOOL=ON" - # tests - "-DENABLE_CPPLINT:BOOL=OFF" - "-DBUILD_TESTING:BOOL=OFF" - "-DENABLE_SAMPLES:BOOL=OFF" - (lib.cmakeBool "CMAKE_VERBOSE_MAKEFILE" true) + "-DProtobuf_LIBRARIES=${protobuf}/lib/libprotobuf${stdenv.hostPlatform.extensions.sharedLibrary}" + + (cmakeBool "CMAKE_VERBOSE_MAKEFILE" true) + (cmakeBool "NCC_SYLE" false) + (cmakeBool "BUILD_TESTING" false) + (cmakeBool "ENABLE_CPPLINT" false) + (cmakeBool "ENABLE_TESTING" false) + (cmakeBool "ENABLE_SAMPLES" false) + + # features + (cmakeBool "ENABLE_INTEL_CPU" true) + (cmakeBool "ENABLE_INTEL_GNA" true) + (cmakeBool "ENABLE_JS" false) + (cmakeBool "ENABLE_LTO" true) + (cmakeBool "ENABLE_ONEDNN_FOR_GPU" false) + (cmakeBool "ENABLE_OPENCV" true) + (cmakeBool "ENABLE_PYTHON" true) + + # system libs + (cmakeBool "ENABLE_SYSTEM_FLATBUFFERS" true) + (cmakeBool "ENABLE_SYSTEM_OPENCL" true) + (cmakeBool "ENABLE_SYSTEM_PROTOBUF" false) + (cmakeBool "ENABLE_SYSTEM_PUGIXML" true) + (cmakeBool "ENABLE_SYSTEM_SNAPPY" true) + (cmakeBool "ENABLE_SYSTEM_TBB" true) ]; env.NIX_CFLAGS_COMPILE = lib.optionalString stdenv.isAarch64 "-Wno-narrowing"; @@ -133,12 +149,13 @@ stdenv.mkDerivation rec { ]; buildInputs = [ + flatbuffers libusb1 libxml2 ocl-icd opencv.cxxdev - protobuf pugixml + snappy tbb ] ++ lib.optionals cudaSupport [ cudaPackages.cuda_cudart @@ -147,11 +164,9 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; postInstall = '' - pushd $out/python/python${lib.versions.majorMinor python.version} mkdir -p $python - mv ./* $python/ - popd - rm -r $out/python + mv $out/python/* $python/ + rmdir $out/python ''; postFixup = '' diff --git a/pkgs/development/libraries/openxr-loader/default.nix b/pkgs/development/libraries/openxr-loader/default.nix index 32544bc327bcb..3c739d30d3862 100644 --- a/pkgs/development/libraries/openxr-loader/default.nix +++ b/pkgs/development/libraries/openxr-loader/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "openxr-loader"; - version = "1.0.32"; + version = "1.0.33"; src = fetchFromGitHub { owner = "KhronosGroup"; repo = "OpenXR-SDK-Source"; rev = "release-${version}"; - sha256 = "sha256-Np91NevE0XiFSZ27cpwAUjm0XY2/IuugGDcfG17aV2c="; + sha256 = "sha256-26CRpxiTfZOq6sQSl0H53UmYzPY/6mP33EPObdkwnQs="; }; nativeBuildInputs = [ cmake python3 pkg-config ]; diff --git a/pkgs/development/libraries/optparse-bash/default.nix b/pkgs/development/libraries/optparse-bash/default.nix deleted file mode 100644 index f14512c5272ac..0000000000000 --- a/pkgs/development/libraries/optparse-bash/default.nix +++ /dev/null @@ -1,63 +0,0 @@ -{ stdenvNoCC -, lib -, fetchFromGitHub -, bash -, gnused -, gawk -, coreutils -}: - -stdenvNoCC.mkDerivation { - pname = "optparse-bash-unstable"; - version = "2021-06-13"; - - src = fetchFromGitHub { - owner = "nk412"; - repo = "optparse"; - rev = "d86ec17d15368e5b54eb2d47b001b0b61d68bbd0"; - sha256 = "sha256-vs7Jo1+sV0tPse4Wu2xtzSX1IkahwLgO3e4Riz3uMmI="; - }; - - postPatch = '' - substituteInPlace optparse.bash \ - --replace sed "${gnused}/bin/sed" \ - --replace awk "${gawk}/bin/awk" \ - --replace printf "${coreutils}/bin/printf" -''; - - dontBuild = true; - - doCheck = true; - - nativeCheckInputs = [ bash ]; - - # `#!/usr/bin/env` isn't okay for OfBorg - # Need external bash to run - checkPhase = '' - runHook preCheck - bash ./sample_head.sh -v --file README.md - runHook postCheck - ''; - - installPhase = '' - runHook preInstall - mkdir -p $out/bin - mv optparse.bash $out/bin/ - mkdir -p $out/share/doc/optparse-bash - mv README.md sample_head.sh $out/share/doc/optparse-bash/ - runHook postInstall - ''; - - # As example code, - # sample_head.sh shows how users can use opt-parse in their script, - # and its shebang (`/usr/bin/env bash`) should not be patched. - dontPatchShebangs = true; - - meta = with lib; { - description = "A BASH wrapper for getopts, for simple command-line argument parsing"; - homepage = "https://github.com/nk412/optparse"; - license = licenses.mit; - platforms = platforms.all; - maintainers = with maintainers; [ ShamrockLee ]; - }; -} diff --git a/pkgs/development/libraries/p11-kit/default.nix b/pkgs/development/libraries/p11-kit/default.nix index 1e01ed4a607a8..6127b83813c71 100644 --- a/pkgs/development/libraries/p11-kit/default.nix +++ b/pkgs/development/libraries/p11-kit/default.nix @@ -39,7 +39,9 @@ stdenv.mkDerivation rec { docbook-xsl-nons docbook_xml_dtd_43 gettext - ] ++ lib.optionals (!stdenv.buildPlatform.canExecute stdenv.hostPlatform) [ + ] ++ lib.optionals + (!stdenv.buildPlatform.canExecute stdenv.hostPlatform + && !stdenv.hostPlatform.isMinGW) [ mesonEmulatorHook ]; diff --git a/pkgs/development/libraries/pangolin/default.nix b/pkgs/development/libraries/pangolin/default.nix index 727f41ca344bf..4618a6d431877 100644 --- a/pkgs/development/libraries/pangolin/default.nix +++ b/pkgs/development/libraries/pangolin/default.nix @@ -6,13 +6,13 @@ stdenv.mkDerivation rec { pname = "pangolin"; - version = "0.8"; + version = "0.9.1"; src = fetchFromGitHub { owner = "stevenlovegrove"; repo = "Pangolin"; rev = "v${version}"; - sha256 = "sha256-X8TZWJOQOCItYt/F8E5ahiaPJXoppu9qBlEqfHP0vRc="; + sha256 = "sha256-B5YuNcJZHjR3dlVs66rySi68j29O3iMtlQvCjTUZBeY="; }; nativeBuildInputs = [ cmake pkg-config doxygen ]; diff --git a/pkgs/development/libraries/pangomm/2.48.nix b/pkgs/development/libraries/pangomm/2.48.nix index 52affe360f84c..0e8bbe80dd843 100644 --- a/pkgs/development/libraries/pangomm/2.48.nix +++ b/pkgs/development/libraries/pangomm/2.48.nix @@ -14,13 +14,13 @@ stdenv.mkDerivation rec { pname = "pangomm"; - version= "2.50.1"; + version= "2.50.2"; outputs = [ "out" "dev" ]; src = fetchurl { url = "mirror://gnome/sources/${pname}/${lib.versions.majorMinor version}/${pname}-${version}.tar.xz"; - sha256 = "sha256-zMmSNBPkCMK/9jffZjJIMn1ygi8R45S0I+HFZSt9khQ="; + sha256 = "sha256-G8WrTqMoBEJYDWgxgibas2zu38Moj52DcRz3z6tQqfs="; }; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/pangomm/default.nix b/pkgs/development/libraries/pangomm/default.nix index ccabdfdcfe8af..02a76869cf1ed 100644 --- a/pkgs/development/libraries/pangomm/default.nix +++ b/pkgs/development/libraries/pangomm/default.nix @@ -3,11 +3,11 @@ stdenv.mkDerivation rec { pname = "pangomm"; - version= "2.46.3"; + version= "2.46.4"; src = fetchurl { url = "mirror://gnome/sources/${pname}/${lib.versions.majorMinor version}/${pname}-${version}.tar.xz"; - sha256 = "sha256-QQ/gTUcaYI8/AnPToX2EAkHZEe0P8sdYqYWcZsbyQ3k="; + sha256 = "sha256-uSAWZhUmQk3kuTd/FRL1l4H0H7FsnAJn1hM7oc1o2yI="; }; outputs = [ "out" "dev" ]; diff --git a/pkgs/development/libraries/pdfhummus/default.nix b/pkgs/development/libraries/pdfhummus/default.nix index bc587d83f158f..bfba4ad096202 100644 --- a/pkgs/development/libraries/pdfhummus/default.nix +++ b/pkgs/development/libraries/pdfhummus/default.nix @@ -12,13 +12,13 @@ stdenv.mkDerivation rec { pname = "pdfhummus"; - version = "4.6.2"; + version = "4.6.3"; src = fetchFromGitHub { owner = "galkahana"; repo = "PDF-Writer"; rev = "v${version}"; - hash = "sha256-PXiLP0lgqBdDbHHfvRT/d0M1jGjMVZZ3VDYnByzkKeI="; + hash = "sha256-6Hp5hacMpVdsiUvMSXBQ5432tPrkHSOiVoWa91sv38k="; }; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/pinocchio/default.nix b/pkgs/development/libraries/pinocchio/default.nix index 63ae2bcf62c9b..add7ef6fde22e 100644 --- a/pkgs/development/libraries/pinocchio/default.nix +++ b/pkgs/development/libraries/pinocchio/default.nix @@ -13,14 +13,14 @@ stdenv.mkDerivation (finalAttrs: { pname = "pinocchio"; - version = "2.6.21"; + version = "2.7.0"; src = fetchFromGitHub { owner = "stack-of-tasks"; repo = finalAttrs.pname; rev = "v${finalAttrs.version}"; fetchSubmodules = true; - hash = "sha256-IaWAXzdzhU/wov+9ChzUeCp9SFNFV2/vGToXC35dkb8="; + hash = "sha256-yhrG+MilGJkvwLUNTAgNhDqUWGjPswjrbg38yOLsmHc="; }; strictDeps = true; @@ -48,7 +48,7 @@ stdenv.mkDerivation (finalAttrs: { ] ++ lib.optionals pythonSupport [ "-DBUILD_WITH_LIBPYTHON=ON" ] ++ lib.optionals (pythonSupport && stdenv.isDarwin) [ - # AssertionError: '.' != '/tmp/nix-build-pinocchio-2.6.21.drv/sou[84 chars].dae' + # AssertionError: '.' != '/tmp/nix-build-pinocchio-2.7.0.drv/sou[84 chars].dae' "-DCMAKE_CTEST_ARGUMENTS='--exclude-regex;test-py-bindings_geometry_model_urdf'" ] ++ lib.optionals (!pythonSupport) [ "-DBUILD_PYTHON_INTERFACE=OFF" diff --git a/pkgs/development/libraries/pipewire/default.nix b/pkgs/development/libraries/pipewire/default.nix index fa5cb97b214fa..0d1e3b03a09a8 100644 --- a/pkgs/development/libraries/pipewire/default.nix +++ b/pkgs/development/libraries/pipewire/default.nix @@ -81,7 +81,7 @@ let self = stdenv.mkDerivation rec { pname = "pipewire"; - version = "1.0.0"; + version = "1.0.1"; outputs = [ "out" @@ -97,7 +97,7 @@ let owner = "pipewire"; repo = "pipewire"; rev = version; - sha256 = "sha256-mfnMluxJAxDbB6JlIM6HJ0zg7e1q3ia3uFbht6zeHCk="; + sha256 = "sha256-rvf0sZRgDDLcqroLg7hcMUqXD/4JT+3lBRX6/m+3Ry8="; }; patches = [ diff --git a/pkgs/development/libraries/pixman/default.nix b/pkgs/development/libraries/pixman/default.nix index 76ec2244c8338..121bb03f4caca 100644 --- a/pkgs/development/libraries/pixman/default.nix +++ b/pkgs/development/libraries/pixman/default.nix @@ -1,6 +1,8 @@ { lib , stdenv , fetchurl +, meson +, ninja , pkg-config , libpng , glib /*just passthru*/ @@ -12,41 +14,57 @@ , tigervnc , wlroots , xwayland + +, gitUpdater }: stdenv.mkDerivation rec { pname = "pixman"; - version = "0.42.2"; + version = "0.43.0"; src = fetchurl { urls = [ "mirror://xorg/individual/lib/${pname}-${version}.tar.gz" "https://cairographics.org/releases/${pname}-${version}.tar.gz" ]; - hash = "sha256-6hSA762i/ZSLx1Nm98NJ4cltMpfQmj/mJibjjiNKYl4="; + hash = "sha256-plwoIJhY+xa+5Q2AnID5Co5BXA5P2DIQeKGCJ4WlVgo="; }; separateDebugInfo = !stdenv.hostPlatform.isStatic; - nativeBuildInputs = [ pkg-config ]; + nativeBuildInputs = [ meson ninja pkg-config ]; buildInputs = [ libpng ]; - configureFlags = lib.optional stdenv.isAarch32 "--disable-arm-iwmmxt" - # Disable until https://gitlab.freedesktop.org/pixman/pixman/-/issues/46 is resolved - ++ lib.optional (stdenv.isAarch64 && !stdenv.cc.isGNU) "--disable-arm-a64-neon"; + # Default "enabled" value attempts to enable CPU features on all + # architectures and requires used to disable them: + # https://gitlab.freedesktop.org/pixman/pixman/-/issues/88 + mesonAutoFeatures = "auto"; + mesonFlags = [ + "-Diwmmxt=disabled" + ] + # Disable until https://gitlab.freedesktop.org/pixman/pixman/-/issues/46 is resolved + ++ lib.optional (stdenv.isAarch64 && !stdenv.cc.isGNU) "-Da64-neon=disabled"; preConfigure = '' # https://gitlab.freedesktop.org/pixman/pixman/-/issues/62 export OMP_NUM_THREADS=$((NIX_BUILD_CORES > 184 ? 184 : NIX_BUILD_CORES)) ''; + enableParallelBuilding = true; + doCheck = true; postInstall = glib.flattenInclude; - passthru.tests = { - inherit cairo qemu scribus tigervnc wlroots xwayland; + passthru = { + tests = { + inherit cairo qemu scribus tigervnc wlroots xwayland; + }; + updateScript = gitUpdater { + url = "https://gitlab.freedesktop.org/pixman/pixman.git"; + rev-prefix = "pixman-"; + }; }; meta = with lib; { diff --git a/pkgs/development/libraries/pmix/default.nix b/pkgs/development/libraries/pmix/default.nix index f5fb65f7989bc..78605179f710f 100644 --- a/pkgs/development/libraries/pmix/default.nix +++ b/pkgs/development/libraries/pmix/default.nix @@ -1,5 +1,7 @@ { lib, stdenv, fetchFromGitHub, perl, autoconf, automake -, libtool, python3, flex, libevent, hwloc, munge, zlib, pandoc, gitMinimal +, removeReferencesTo, libtool, python3, flex, libevent +, targetPackages, makeWrapper +, hwloc, munge, zlib, pandoc, gitMinimal } : stdenv.mkDerivation rec { @@ -14,6 +16,8 @@ stdenv.mkDerivation rec { fetchSubmodules = true; }; + outputs = [ "out" "dev" ]; + postPatch = '' patchShebangs ./autogen.pl patchShebangs ./config @@ -28,6 +32,8 @@ stdenv.mkDerivation rec { flex gitMinimal python3 + removeReferencesTo + makeWrapper ]; buildInputs = [ libevent hwloc munge zlib ]; @@ -46,6 +52,27 @@ stdenv.mkDerivation rec { postInstall = '' find $out/lib/ -name "*.la" -exec rm -f \{} \; + + moveToOutput "bin/pmix_info" "''${!outputDev}" + moveToOutput "bin/pmixcc" "''${!outputDev}" + moveToOutput "share/pmix/pmixcc-wrapper-data.txt" "''${!outputDev}" + + # The path to the pmixcc-wrapper-data.txt is hard coded and + # points to $out instead of dev. Use wrapper to fix paths. + wrapProgram $dev/bin/pmixcc \ + --set PMIX_INCLUDEDIR $dev/include \ + --set PMIX_PKGDATADIR $dev/share/pmix + ''; + + postFixup = '' + # The build info (parameters to ./configure) are hardcoded + # into the library. This clears all references to $dev/include. + remove-references-to -t $dev $(readlink -f $out/lib/libpmix.so) + + # Pin the compiler to the current version in a cross compiler friendly way. + # Same pattern as for openmpi (see https://github.com/NixOS/nixpkgs/pull/58964#discussion_r275059427). + sed -i 's:compiler=.*:compiler=${targetPackages.stdenv.cc}/bin/${targetPackages.stdenv.cc.targetPrefix}cc:' \ + $dev/share/pmix/pmixcc-wrapper-data.txt ''; enableParallelBuilding = true; diff --git a/pkgs/development/libraries/poco/default.nix b/pkgs/development/libraries/poco/default.nix index b4ba1790d58dc..2358d19240a24 100644 --- a/pkgs/development/libraries/poco/default.nix +++ b/pkgs/development/libraries/poco/default.nix @@ -3,12 +3,12 @@ stdenv.mkDerivation rec { pname = "poco"; - version = "1.12.5"; + version = "1.12.5p2"; src = fetchFromGitHub { owner = "pocoproject"; repo = "poco"; - sha256 = "sha256-2macXa2pi5FebSrTIfSQbIiafNCXczNQEP+PFbFxylw="; + sha256 = "sha256-UAseNOC9n+OooDl4E67qcndJ02fAgmp2d8Ii/IyPvhg="; rev = "poco-${version}-release"; }; diff --git a/pkgs/development/libraries/protobuf/25.nix b/pkgs/development/libraries/protobuf/25.nix index b994f60609423..0b05e81cc029a 100644 --- a/pkgs/development/libraries/protobuf/25.nix +++ b/pkgs/development/libraries/protobuf/25.nix @@ -1,6 +1,6 @@ { callPackage, ... } @ args: callPackage ./generic.nix ({ - version = "25.1"; - hash = "sha256-w6556kxftVZ154LrZB+jv9qK+QmMiUOGj6EcNwiV+yo="; + version = "25.2"; + hash = "sha256-Bw7xOgcGLshFppH4qD8E48D8v21ZJRaRkK19LPSATMg="; } // args) diff --git a/pkgs/development/libraries/qmltermwidget/default.nix b/pkgs/development/libraries/qmltermwidget/default.nix index 8c98fdbdd6f10..863d5f25d2869 100644 --- a/pkgs/development/libraries/qmltermwidget/default.nix +++ b/pkgs/development/libraries/qmltermwidget/default.nix @@ -38,6 +38,14 @@ stdenv.mkDerivation { hash = "sha256-1GjC2mdfP3NpePDWZaT8zvIq3vwWIZs+iQ9o01iQtD4="; }) + # A fix to the above series of patches, to fix a crash in lomiri-terminal-app + # Remove (and update the above fetchpatch) when https://github.com/gber/qmltermwidget/pull/1 merged + (fetchpatch { + name = "0002-qmltermwidget-Mark-ColorSchemeManager-singleton-as-C++-owned.patch"; + url = "https://github.com/gber/qmltermwidget/commit/f3050bda066575eebdcff70fc1c3a393799e1d6d.patch"; + hash = "sha256-O8fEpVLYMze6q4ps7RDGbNukRmZZBjLwqmvRqpp+H+Y="; + }) + # Some files are copied twice to the output which makes the build fails ./do-not-copy-artifacts-twice.patch ]; diff --git a/pkgs/development/libraries/qrencode/default.nix b/pkgs/development/libraries/qrencode/default.nix index a0e23813ade2c..83c20fcd51207 100644 --- a/pkgs/development/libraries/qrencode/default.nix +++ b/pkgs/development/libraries/qrencode/default.nix @@ -1,6 +1,6 @@ { lib, stdenv, fetchurl, pkg-config, SDL2, libpng, libiconv, libobjc }: -stdenv.mkDerivation rec { +stdenv.mkDerivation (finalAttrs: rec { pname = "qrencode"; version = "4.1.1"; @@ -16,13 +16,9 @@ stdenv.mkDerivation rec { buildInputs = [ libiconv libpng ] ++ lib.optionals stdenv.isDarwin [ libobjc ]; - configureFlags = [ - "--with-tests" - ]; - nativeCheckInputs = [ SDL2 ]; - doCheck = true; + doCheck = false; checkPhase = '' runHook preCheck @@ -34,6 +30,11 @@ stdenv.mkDerivation rec { runHook postCheck ''; + passthru.tests = finalAttrs.finalPackage.overrideAttrs (_: { + configureFlags = [ "--with-tests" ]; + doCheck = true; + }); + meta = with lib; { homepage = "https://fukuchi.org/works/qrencode/"; description = "C library for encoding data in a QR Code symbol"; @@ -47,4 +48,4 @@ stdenv.mkDerivation rec { platforms = platforms.all; mainProgram = "qrencode"; }; -} +}) diff --git a/pkgs/development/libraries/qt-5/5.15/default.nix b/pkgs/development/libraries/qt-5/5.15/default.nix index 7a5ff60c9acbb..b0e92290fe5b7 100644 --- a/pkgs/development/libraries/qt-5/5.15/default.nix +++ b/pkgs/development/libraries/qt-5/5.15/default.nix @@ -51,6 +51,8 @@ let ./qtdeclarative.patch # prevent headaches from stale qmlcache data ./qtdeclarative-default-disable-qmlcache.patch + # add version specific QML import path + ./qtdeclarative-qml-paths.patch ]; qtlocation = lib.optionals stdenv.cc.isClang [ # Fix build with Clang 16 diff --git a/pkgs/development/libraries/qt-5/5.15/qtdeclarative-qml-paths.patch b/pkgs/development/libraries/qt-5/5.15/qtdeclarative-qml-paths.patch new file mode 100644 index 0000000000000..e207fa4df3bd4 --- /dev/null +++ b/pkgs/development/libraries/qt-5/5.15/qtdeclarative-qml-paths.patch @@ -0,0 +1,33 @@ +diff --git a/src/qml/qml/qqmlimport.cpp b/src/qml/qml/qqmlimport.cpp +index 289f11d006..9b0a48c6c7 100644 +--- a/src/qml/qml/qqmlimport.cpp ++++ b/src/qml/qml/qqmlimport.cpp +@@ -1897,17 +1897,22 @@ QQmlImportDatabase::QQmlImportDatabase(QQmlEngine *e) + addImportPath(installImportsPath); + + // env import paths +- if (Q_UNLIKELY(!qEnvironmentVariableIsEmpty("QML2_IMPORT_PATH"))) { +- const QString envImportPath = qEnvironmentVariable("QML2_IMPORT_PATH"); ++ auto addEnvImportPath = [this](const char *var) { + #if defined(Q_OS_WIN) + QLatin1Char pathSep(';'); + #else + QLatin1Char pathSep(':'); + #endif +- QStringList paths = envImportPath.split(pathSep, Qt::SkipEmptyParts); +- for (int ii = paths.count() - 1; ii >= 0; --ii) +- addImportPath(paths.at(ii)); +- } ++ if (Q_UNLIKELY(!qEnvironmentVariableIsEmpty(var))) { ++ const QString envImportPath = qEnvironmentVariable(var); ++ QStringList paths = envImportPath.split(pathSep, Qt::SkipEmptyParts); ++ for (int ii = paths.count() - 1; ii >= 0; --ii) ++ addImportPath(paths.at(ii)); ++ } ++ }; ++ ++ addEnvImportPath("QML2_IMPORT_PATH"); ++ addEnvImportPath("NIXPKGS_QT5_QML_IMPORT_PATH"); + + addImportPath(QStringLiteral("qrc:/qt-project.org/imports")); + addImportPath(QCoreApplication::applicationDirPath()); diff --git a/pkgs/development/libraries/qt-5/hooks/wrap-qt-apps-hook.sh b/pkgs/development/libraries/qt-5/hooks/wrap-qt-apps-hook.sh index 2127be5e0a2a0..94df0a1a8e661 100644 --- a/pkgs/development/libraries/qt-5/hooks/wrap-qt-apps-hook.sh +++ b/pkgs/development/libraries/qt-5/hooks/wrap-qt-apps-hook.sh @@ -31,7 +31,7 @@ qtHostPathHook() { local qmlDir="$1/${qtQmlPrefix:?}" if [ -d "$qmlDir" ] then - qtWrapperArgs+=(--prefix QML2_IMPORT_PATH : "$qmlDir") + qtWrapperArgs+=(--prefix NIXPKGS_QT5_QML_IMPORT_PATH : "$qmlDir") fi } addEnvHooks "$targetOffset" qtHostPathHook diff --git a/pkgs/development/libraries/qt-6/default.nix b/pkgs/development/libraries/qt-6/default.nix index 2610c8463b2ea..a1d597adcd1dc 100644 --- a/pkgs/development/libraries/qt-6/default.nix +++ b/pkgs/development/libraries/qt-6/default.nix @@ -164,7 +164,7 @@ let qtwayland = callPackage ./modules/qtwayland.nix { }; qtwebchannel = callPackage ./modules/qtwebchannel.nix { }; qtwebengine = callPackage ./modules/qtwebengine.nix { - inherit (darwin) bootstrap_cmds cctools xnu; + inherit (darwin) autoSignDarwinBinariesHook bootstrap_cmds cctools xnu; inherit (darwin.apple_sdk_11_0) libpm libunwind; inherit (darwin.apple_sdk_11_0.libs) sandbox; inherit (darwin.apple_sdk_11_0.frameworks) diff --git a/pkgs/development/libraries/qt-6/hooks/wrap-qt-apps-hook.sh b/pkgs/development/libraries/qt-6/hooks/wrap-qt-apps-hook.sh index 8b135a7d7492f..2d858055693cc 100644 --- a/pkgs/development/libraries/qt-6/hooks/wrap-qt-apps-hook.sh +++ b/pkgs/development/libraries/qt-6/hooks/wrap-qt-apps-hook.sh @@ -31,7 +31,7 @@ if [[ -z "${__nix_wrapQtAppsHook-}" ]]; then local qmlDir="$1/${qtQmlPrefix:?}" if [ -d "$qmlDir" ]; then - qtWrapperArgs+=(--prefix QML2_IMPORT_PATH : "$qmlDir") + qtWrapperArgs+=(--prefix NIXPKGS_QT6_QML_IMPORT_PATH : "$qmlDir") fi } addEnvHooks "$targetOffset" qtHostPathHook diff --git a/pkgs/development/libraries/qt-6/modules/qtdeclarative.nix b/pkgs/development/libraries/qt-6/modules/qtdeclarative.nix index afdb24d1d291a..697556e30edc5 100644 --- a/pkgs/development/libraries/qt-6/modules/qtdeclarative.nix +++ b/pkgs/development/libraries/qt-6/modules/qtdeclarative.nix @@ -12,5 +12,7 @@ qtModule { patches = [ # prevent headaches from stale qmlcache data ../patches/qtdeclarative-default-disable-qmlcache.patch + # add version specific QML import path + ../patches/qtdeclarative-qml-paths.patch ]; } diff --git a/pkgs/development/libraries/qt-6/modules/qtwebengine.nix b/pkgs/development/libraries/qt-6/modules/qtwebengine.nix index affb512a22f27..564c5c60eb516 100644 --- a/pkgs/development/libraries/qt-6/modules/qtwebengine.nix +++ b/pkgs/development/libraries/qt-6/modules/qtwebengine.nix @@ -60,6 +60,7 @@ , mesa , enableProprietaryCodecs ? true # darwin +, autoSignDarwinBinariesHook , bootstrap_cmds , cctools , xcbuild @@ -104,6 +105,8 @@ qtModule { which gn nodejs + ] ++ lib.optionals (stdenv.isDarwin && stdenv.isAarch64) [ + autoSignDarwinBinariesHook ] ++ lib.optionals stdenv.isDarwin [ bootstrap_cmds cctools @@ -185,16 +188,19 @@ qtModule { "-DQT_FEATURE_pdf_xfa_gif=ON" "-DQT_FEATURE_pdf_xfa_png=ON" "-DQT_FEATURE_pdf_xfa_tiff=ON" - "-DQT_FEATURE_webengine_system_icu=ON" "-DQT_FEATURE_webengine_system_libevent=ON" - "-DQT_FEATURE_webengine_system_libxml=ON" "-DQT_FEATURE_webengine_system_ffmpeg=ON" # android only. https://bugreports.qt.io/browse/QTBUG-100293 # "-DQT_FEATURE_webengine_native_spellchecker=ON" "-DQT_FEATURE_webengine_sanitizer=ON" "-DQT_FEATURE_webengine_kerberos=ON" ] ++ lib.optionals stdenv.isLinux [ + "-DQT_FEATURE_webengine_system_libxml=ON" "-DQT_FEATURE_webengine_webrtc_pipewire=ON" + + # Appears not to work on some platforms + # https://github.com/Homebrew/homebrew-core/issues/104008 + "-DQT_FEATURE_webengine_system_icu=ON" ] ++ lib.optionals enableProprietaryCodecs [ "-DQT_FEATURE_webengine_proprietary_codecs=ON" ] ++ lib.optionals stdenv.isDarwin [ @@ -222,11 +228,9 @@ qtModule { # Text rendering harfbuzz - icu openssl glib - libxml2 libxslt lcms2 @@ -241,6 +245,9 @@ qtModule { protobuf jsoncpp + icu + libxml2 + # Audio formats alsa-lib pulseaudio diff --git a/pkgs/development/libraries/qt-6/patches/qtdeclarative-qml-paths.patch b/pkgs/development/libraries/qt-6/patches/qtdeclarative-qml-paths.patch new file mode 100644 index 0000000000000..39b7a30892cf3 --- /dev/null +++ b/pkgs/development/libraries/qt-6/patches/qtdeclarative-qml-paths.patch @@ -0,0 +1,12 @@ +diff --git a/src/qml/qml/qqmlimport.cpp b/src/qml/qml/qqmlimport.cpp +index 2e482c220d..4873809bec 100644 +--- a/src/qml/qml/qqmlimport.cpp ++++ b/src/qml/qml/qqmlimport.cpp +@@ -1517,6 +1517,7 @@ QQmlImportDatabase::QQmlImportDatabase(QQmlEngine *e) + // env import paths + addEnvImportPath("QML_IMPORT_PATH"); + addEnvImportPath("QML2_IMPORT_PATH"); ++ addEnvImportPath("NIXPKGS_QT6_QML_IMPORT_PATH"); + + addImportPath(QStringLiteral("qrc:/qt/qml")); + addImportPath(QStringLiteral("qrc:/qt-project.org/imports")); diff --git a/pkgs/development/libraries/qt-6/patches/qtwebengine-libxml-2.12.patch b/pkgs/development/libraries/qt-6/patches/qtwebengine-libxml-2.12.patch index 1fc7d837f8f34..3c3d59b488da3 100644 --- a/pkgs/development/libraries/qt-6/patches/qtwebengine-libxml-2.12.patch +++ b/pkgs/development/libraries/qt-6/patches/qtwebengine-libxml-2.12.patch @@ -1,22 +1,29 @@ --- a/src/3rdparty/chromium/third_party/blink/renderer/core/xml/xslt_processor.h +++ b/src/3rdparty/chromium/third_party/blink/renderer/core/xml/xslt_processor.h -@@ -77,7 +77,7 @@ class XSLTProcessor final : public ScriptWrappable { +@@ -77,7 +77,12 @@ class XSLTProcessor final : public ScriptWrappable { void reset(); -- static void ParseErrorFunc(void* user_data, xmlError*); ++#if LIBXML_VERSION >= 21200 + static void ParseErrorFunc(void* user_data, const xmlError*); ++#else + static void ParseErrorFunc(void* user_data, xmlError*); ++#endif ++ static void GenericErrorFunc(void* user_data, const char* msg, ...); // Only for libXSLT callbacks --- a/src/3rdparty/chromium/third_party/blink/renderer/core/xml/xslt_processor_libxslt.cc +++ b/src/3rdparty/chromium/third_party/blink/renderer/core/xml/xslt_processor_libxslt.cc -@@ -66,7 +66,7 @@ void XSLTProcessor::GenericErrorFunc(void*, const char*, ...) { +@@ -66,7 +66,11 @@ void XSLTProcessor::GenericErrorFunc(void*, const char*, ...) { // It would be nice to do something with this error message. } --void XSLTProcessor::ParseErrorFunc(void* user_data, xmlError* error) { ++#if LIBXML_VERSION >= 21200 +void XSLTProcessor::ParseErrorFunc(void* user_data, const xmlError* error) { ++#else + void XSLTProcessor::ParseErrorFunc(void* user_data, xmlError* error) { ++#endif FrameConsole* console = static_cast<FrameConsole*>(user_data); if (!console) return; diff --git a/pkgs/development/libraries/qtkeychain/default.nix b/pkgs/development/libraries/qtkeychain/default.nix index 1f9ffb373082f..564eb31a71395 100644 --- a/pkgs/development/libraries/qtkeychain/default.nix +++ b/pkgs/development/libraries/qtkeychain/default.nix @@ -12,13 +12,13 @@ stdenv.mkDerivation rec { pname = "qtkeychain"; - version = "0.14.1"; + version = "0.14.2"; src = fetchFromGitHub { owner = "frankosterfeld"; repo = "qtkeychain"; rev = version; - sha256 = "sha256-LclYOuIYn+jYCvg69uHFlV3VcZ2KWdr8lFyCSBIB7Kw="; + sha256 = "sha256-aRBhg4RwK2jUQWW/OmzNSMUScaFUPdbWbApD37CXPoI="; }; dontWrapQtApps = true; diff --git a/pkgs/development/libraries/qwlroots/default.nix b/pkgs/development/libraries/qwlroots/default.nix new file mode 100644 index 0000000000000..85282afb15b56 --- /dev/null +++ b/pkgs/development/libraries/qwlroots/default.nix @@ -0,0 +1,69 @@ +{ stdenv +, lib +, fetchFromGitHub +, cmake +, pkg-config +, wrapQtAppsHook +, wayland-scanner +, qtbase +, wayland +, wayland-protocols +, wlr-protocols +, pixman +, mesa +, vulkan-loader +, libinput +, xorg +, seatd +, wlroots +}: + +stdenv.mkDerivation (finalAttrs: { + pname = "qwlroots"; + version = "0.1.0"; + + src = fetchFromGitHub { + owner = "vioken"; + repo = "qwlroots"; + rev = finalAttrs.version; + hash = "sha256-ev4oCKR43XaYNTavj9XI3RAtB6RFprChpBFsrA2nVsM="; + }; + + nativeBuildInputs = [ + cmake + pkg-config + wrapQtAppsHook + wayland-scanner + ]; + + buildInputs = [ + qtbase + wayland + wayland-protocols + wlr-protocols + pixman + mesa + vulkan-loader + libinput + xorg.libXdmcp + xorg.xcbutilerrors + seatd + ]; + + propagatedBuildInputs = [ + wlroots + ]; + + cmakeFlags = [ + (lib.cmakeBool "PREFER_QT_5" (lib.versionOlder qtbase.version "6")) + ]; + + meta = { + description = "Qt and QML bindings for wlroots"; + homepage = "https://github.com/vioken/qwlroots"; + license = with lib.licenses; [ gpl3Only lgpl3Only asl20 ]; + platforms = wlroots.meta.platforms; + maintainers = with lib.maintainers; [ rewine ]; + }; +}) + diff --git a/pkgs/development/libraries/rapidfuzz-cpp/default.nix b/pkgs/development/libraries/rapidfuzz-cpp/default.nix index 8375d55e40567..f24da2c899f12 100644 --- a/pkgs/development/libraries/rapidfuzz-cpp/default.nix +++ b/pkgs/development/libraries/rapidfuzz-cpp/default.nix @@ -3,17 +3,18 @@ , fetchFromGitHub , cmake , catch2_3 +, python3Packages }: stdenv.mkDerivation (finalAttrs: { pname = "rapidfuzz-cpp"; - version = "2.2.3"; + version = "3.0.0"; src = fetchFromGitHub { owner = "maxbachmann"; repo = "rapidfuzz-cpp"; rev = "v${finalAttrs.version}"; - hash = "sha256-yEDihPvTGGL5gsd4QMYNRyfLucKLItIQM4pm6W0i2W8="; + hash = "sha256-N9yGOxlk1+wgRXWLbDIXWQz+/pwbnYVs3ub4/16Nzws="; }; nativeBuildInputs = [ @@ -33,6 +34,13 @@ stdenv.mkDerivation (finalAttrs: { catch2_3 ]; + passthru = { + tests = { + /** `python3Packages.levenshtein` crucially depends on `rapidfuzz-cpp` */ + inherit (python3Packages) levenshtein; + }; + }; + meta = { description = "Rapid fuzzy string matching in C++ using the Levenshtein Distance"; homepage = "https://github.com/maxbachmann/rapidfuzz-cpp"; diff --git a/pkgs/development/libraries/readline/readline-8.2-patches.nix b/pkgs/development/libraries/readline/readline-8.2-patches.nix index bc075df237c7b..77d5c495bac1c 100644 --- a/pkgs/development/libraries/readline/readline-8.2-patches.nix +++ b/pkgs/development/libraries/readline/readline-8.2-patches.nix @@ -8,4 +8,7 @@ patch: [ (patch "005" "16ac25jz1a1mgkpfp1sydqf6qpsfh0s0dcmrnjpqbhg5va3s6av2") (patch "006" "18gmh6y3klh0vv28cyqz4is3rlb32pl7f1kf5r482kfjq3w5zd67") (patch "007" "1xmnpahs983n4w0gn3j0wr8nh1dpva33yj7fvfmhm46ph2wsa4ar") +(patch "008" "0smjjzhwxi2ibpdisnk53lh1pzgka6rhlqyh3662xy69v34ysxx1") +(patch "009" "05m1fwbs7mbs3pz3pg87gbbayandrrcgaqawzliqb6g1jbk8b61x") +(patch "010" "0k3vyrjs2g6y2cfs03l2gp37fhxgqpiwvxb1c7z4q88cbb32x3km") ] diff --git a/pkgs/development/libraries/redis-plus-plus/default.nix b/pkgs/development/libraries/redis-plus-plus/default.nix index 03a5c9ba3308c..bd40330194a75 100644 --- a/pkgs/development/libraries/redis-plus-plus/default.nix +++ b/pkgs/development/libraries/redis-plus-plus/default.nix @@ -8,13 +8,13 @@ assert enableShared || enableStatic; stdenv.mkDerivation rec { pname = "redis-plus-plus"; - version = "1.3.11"; + version = "1.3.12"; src = fetchFromGitHub { owner = "sewenew"; repo = "redis-plus-plus"; rev = version; - sha256 = "sha256-ZALnF2h+9LSeh1OA33fdVyT0PYcGen5j+qsufBv5t5I="; + sha256 = "sha256-RI7lLvRmS5BglvwRQ8OzSpYIyaKkf/DKrJ3fn1mWYfs="; }; patches = [ diff --git a/pkgs/development/libraries/reproc/default.nix b/pkgs/development/libraries/reproc/default.nix index 680455d4cb5af..ae920f4cb0d23 100644 --- a/pkgs/development/libraries/reproc/default.nix +++ b/pkgs/development/libraries/reproc/default.nix @@ -1,4 +1,4 @@ -{ stdenv, lib, fetchFromGitHub, cmake +{ stdenv, lib, fetchFromGitHub, cmake, fetchpatch }: stdenv.mkDerivation rec { @@ -12,6 +12,19 @@ stdenv.mkDerivation rec { sha256 = "sha256-LWzBeKhE7cSiZsK8xWzoTdrOcPiU/zEkmi40WiFytic="; }; + patches = [ + (fetchpatch{ + name = "reproc-gcc-13-2.patch"; + url = "https://github.com/DaanDeMeyer/reproc/commit/0b23d88894ccedde04537fa23ea55cb2f8365342.patch"; + sha256 = "sha256-QyC0UcKAWCKSvSvyZTLI2eF/TuuqbGGH6cOQrS2DiCE="; + }) + (fetchpatch{ + name = "reproc-gcc-13-1.patch"; + url = "https://github.com/DaanDeMeyer/reproc/commit/9f399675b821e175f85ac3ee6e3fd2e6056573eb.patch"; + sha256 = "sha256-h/gnDFPWPpUFkys10YXjjEPibgRT1atHSVwbO0kId+U="; + }) + ]; + nativeBuildInputs = [ cmake ]; cmakeFlags = [ diff --git a/pkgs/development/libraries/rlottie/default.nix b/pkgs/development/libraries/rlottie/default.nix index 3d4e8a5a66411..cbc46f819e5f4 100644 --- a/pkgs/development/libraries/rlottie/default.nix +++ b/pkgs/development/libraries/rlottie/default.nix @@ -2,7 +2,7 @@ , stdenv , fetchFromGitHub , fetchpatch -, meson +, cmake , ninja , pkg-config }: @@ -26,7 +26,11 @@ stdenv.mkDerivation rec { }) ]; - nativeBuildInputs = [ meson ninja pkg-config ]; + nativeBuildInputs = [ cmake ninja pkg-config ]; + + cmakeFlags = [ + (lib.cmakeFeature "LIB_INSTALL_DIR" "${placeholder "out"}/lib") + ]; env.NIX_CFLAGS_COMPILE = lib.optionalString (stdenv.isDarwin && stdenv.isAarch64) "-U__ARM_NEON__"; diff --git a/pkgs/development/libraries/rubberband/default.nix b/pkgs/development/libraries/rubberband/default.nix index d0d1a93ad4629..7830e62ccb181 100644 --- a/pkgs/development/libraries/rubberband/default.nix +++ b/pkgs/development/libraries/rubberband/default.nix @@ -1,20 +1,26 @@ { lib, stdenv, fetchurl, pkg-config, libsamplerate, libsndfile, fftw +, lv2, jdk , vamp-plugin-sdk, ladspaH, meson, ninja, darwin }: stdenv.mkDerivation rec { pname = "rubberband"; - version = "3.1.0"; + version = "3.3.0"; src = fetchurl { url = "https://breakfastquay.com/files/releases/${pname}-${version}.tar.bz2"; - sha256 = "sha256-uVp22lzbOWZ3DGARXs2Dj4QGESD4hMO/3JBPdZMeyao="; + hash = "sha256-2e+J4rjvn4WxOsPC+uww4grPLJ86nIxFzmN/K8leV2w="; }; - nativeBuildInputs = [ pkg-config meson ninja ]; - buildInputs = [ libsamplerate libsndfile fftw vamp-plugin-sdk ladspaH ] ++ lib.optionals stdenv.isDarwin + nativeBuildInputs = [ pkg-config meson ninja jdk ]; + buildInputs = [ libsamplerate libsndfile fftw vamp-plugin-sdk ladspaH lv2 ] ++ lib.optionals stdenv.isDarwin (with darwin.apple_sdk.frameworks; [Accelerate CoreGraphics CoreVideo]); makeFlags = [ "AR:=$(AR)" ]; + # TODO: package boost-test, so we can run the test suite. (Currently it fails + # to find libboost_unit_test_framework.a.) + mesonFlags = [ "-Dtests=disabled" ]; + doCheck = false; + meta = with lib; { description = "High quality software library for audio time-stretching and pitch-shifting"; homepage = "https://breakfastquay.com/rubberband/"; diff --git a/pkgs/development/libraries/rure/Cargo.lock b/pkgs/development/libraries/rure/Cargo.lock index 1dd2aeb38b4e1..a5ba9527382e5 100644 --- a/pkgs/development/libraries/rure/Cargo.lock +++ b/pkgs/development/libraries/rure/Cargo.lock @@ -13,9 +13,9 @@ dependencies = [ [[package]] name = "libc" -version = "0.2.152" +version = "0.2.153" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "13e3bf6590cbc649f4d1a3eefc9d5d6eb746f5200ffb04e5e142700b8faa56e7" +checksum = "9c198f91728a82281a64e1f4f9eeb25d82cb32a5de251c6bd1b5154d63a8e7bd" [[package]] name = "memchr" @@ -25,9 +25,9 @@ checksum = "523dc4f511e55ab87b694dc30d0f820d60906ef06413f93d4d7a1385599cc149" [[package]] name = "regex" -version = "1.10.2" +version = "1.10.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "380b951a9c5e80ddfd6136919eef32310721aa4aacd4889a8d39124b026ab343" +checksum = "b62dbe01f0b06f9d8dc7d49e05a0785f153b00b2c227856282f671e0318c9b15" dependencies = [ "aho-corasick", "memchr", @@ -37,9 +37,9 @@ dependencies = [ [[package]] name = "regex-automata" -version = "0.4.3" +version = "0.4.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5f804c7828047e88b2d32e2d7fe5a105da8ee3264f01902f796c8e067dc2483f" +checksum = "5bb987efffd3c6d0d8f5f89510bb458559eab11e4f869acb20bf845e016259cd" dependencies = [ "aho-corasick", "memchr", diff --git a/pkgs/development/libraries/rutabaga_gfx/default.nix b/pkgs/development/libraries/rutabaga_gfx/default.nix index ca220bb6ecc41..63f1ed88ae6c1 100644 --- a/pkgs/development/libraries/rutabaga_gfx/default.nix +++ b/pkgs/development/libraries/rutabaga_gfx/default.nix @@ -1,5 +1,13 @@ -{ lib, stdenv, fetchgit, cargo, pkg-config, rustPlatform -, aemu, gfxstream, libcap, libdrm, minijail +{ lib +, stdenv +, fetchgit +, fetchpatch +, cargo +, pkg-config +, rustPlatform +, aemu +, gfxstream +, libdrm }: stdenv.mkDerivation (finalAttrs: { @@ -13,9 +21,23 @@ stdenv.mkDerivation (finalAttrs: { hash = "sha256-0RJDKzeU7U6hc6CLKks8QcRs3fxN+/LYUbB0t6W790M="; }; + patches = [ + # Make gfxstream optional + # https://chromium-review.googlesource.com/c/crosvm/crosvm/+/4860836 + (fetchpatch { + url = "https://chromium.googlesource.com/crosvm/crosvm/+/c3ad0e43eb12cbf737a6049e0134d483e337363f%5E%21/?format=TEXT"; + decode = "base64 -d"; + hash = "sha256-Ji1bK7jnRlg0OpDfCLcTHfPSiz3zYcdgsWL4n3EoIYI="; + }) + ]; + nativeBuildInputs = [ cargo pkg-config rustPlatform.cargoSetupHook ]; - buildInputs = [ aemu gfxstream ] - ++ lib.optional (lib.meta.availableOn stdenv.hostPlatform libdrm) libdrm; + buildInputs = lib.optionals (lib.meta.availableOn stdenv.hostPlatform gfxstream) ([ + aemu + gfxstream + ] ++ lib.optionals (lib.meta.availableOn stdenv.hostPlatform libdrm) [ + libdrm + ]); cargoDeps = rustPlatform.fetchCargoTarball { inherit (finalAttrs) src; diff --git a/pkgs/development/libraries/science/astronomy/indilib/default.nix b/pkgs/development/libraries/science/astronomy/indilib/default.nix index 3fae85187deb7..f0d25defe1221 100644 --- a/pkgs/development/libraries/science/astronomy/indilib/default.nix +++ b/pkgs/development/libraries/science/astronomy/indilib/default.nix @@ -15,17 +15,18 @@ , gsl , fftw , gtest +, indi-full }: -stdenv.mkDerivation rec { +stdenv.mkDerivation (finalAttrs: { pname = "indilib"; - version = "2.0.5"; + version = "2.0.6"; src = fetchFromGitHub { owner = "indilib"; repo = "indi"; - rev = "v${version}"; - hash = "sha256-n1zj1U26l30JYr5Tio5zwv8v/e2cjEeIRGsyncMtt9I="; + rev = "v${finalAttrs.version}"; + hash = "sha256-3MeF2G/rr//c7cgGzqDzmqoNKvR+7Kkbid1g8znKPkg="; }; nativeBuildInputs = [ @@ -48,7 +49,7 @@ stdenv.mkDerivation rec { cmakeFlags = [ "-DCMAKE_INSTALL_LIBDIR=lib" "-DUDEVRULES_INSTALL_DIR=lib/udev/rules.d" - ] ++ lib.optional doCheck [ + ] ++ lib.optional finalAttrs.finalPackage.doCheck [ "-DINDI_BUILD_UNITTESTS=ON" "-DINDI_BUILD_INTEGTESTS=ON" ]; @@ -68,13 +69,19 @@ stdenv.mkDerivation rec { done ''; + passthru.tests = { + # make sure 3rd party drivers compile with this indilib + indi-full = indi-full.override { + indilib = finalAttrs.finalPackage; + }; + }; meta = with lib; { homepage = "https://www.indilib.org/"; description = "Implementation of the INDI protocol for POSIX operating systems"; - changelog = "https://github.com/indilib/indi/releases/tag/v${version}"; + changelog = "https://github.com/indilib/indi/releases/tag/v${finalAttrs.version}"; license = licenses.lgpl2Plus; maintainers = with maintainers; [ hjones2199 sheepforce ]; platforms = platforms.unix; }; -} +}) diff --git a/pkgs/development/libraries/science/astronomy/indilib/indi-full.nix b/pkgs/development/libraries/science/astronomy/indilib/indi-full.nix index e2018ce7c2b04..4dd80c3f02754 100644 --- a/pkgs/development/libraries/science/astronomy/indilib/indi-full.nix +++ b/pkgs/development/libraries/science/astronomy/indilib/indi-full.nix @@ -6,7 +6,7 @@ let owner = "indilib"; repo = "indi-3rdparty"; rev = "v${version}"; - hash = "sha256-EtwN3yuMsT9CV+CapkKDy3e92u9Blvy+ySrQU586Z1s="; + hash = "sha256-KNoyYldZWsXB9ubu0EYDgckRtpQgSCmzKlx7Erx4MRQ="; }; indi-firmware = callPackage ./indi-firmware.nix { inherit version; diff --git a/pkgs/development/libraries/science/biology/EBTKS/default.nix b/pkgs/development/libraries/science/biology/EBTKS/default.nix deleted file mode 100644 index 7a6122fbc8db1..0000000000000 --- a/pkgs/development/libraries/science/biology/EBTKS/default.nix +++ /dev/null @@ -1,32 +0,0 @@ -{ lib, stdenv, fetchFromGitHub, cmake, libminc }: - -stdenv.mkDerivation rec { - pname = "EBTKS"; - version = "unstable-2017-09-23"; - - src = fetchFromGitHub { - owner = "BIC-MNI"; - repo = pname; - rev = "67e4e197d8a32d6462c9bdc7af44d64ebde4fb5c"; - sha256 = "1a1qw6i47fs1izx60l1ysabpmyx9j5sjnbdv8b47wi2xcc9i3hpq"; - }; - - # error: use of undeclared identifier 'finite'; did you mean 'isfinite'? - postPatch = '' - substituteInPlace templates/EBTKS/SimpleArray.h \ - --replace "#define FINITE(x) finite(x)" "#define FINITE(x) isfinite(x)" - ''; - - nativeBuildInputs = [ cmake ]; - buildInputs = [ libminc ]; - - cmakeFlags = [ "-DLIBMINC_DIR=${libminc}/lib/cmake" ]; - - meta = with lib; { - homepage = "https://github.com/BIC-MNI/${pname}"; - description = "Library for working with MINC files"; - maintainers = with maintainers; [ bcdarwin ]; - platforms = platforms.unix; - license = licenses.free; - }; -} diff --git a/pkgs/development/libraries/science/biology/htslib/default.nix b/pkgs/development/libraries/science/biology/htslib/default.nix index d89b6dbbe6794..8b1aa7d01e818 100644 --- a/pkgs/development/libraries/science/biology/htslib/default.nix +++ b/pkgs/development/libraries/science/biology/htslib/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "htslib"; - version = "1.19"; + version = "1.19.1"; src = fetchurl { url = "https://github.com/samtools/htslib/releases/download/${version}/${pname}-${version}.tar.bz2"; - sha256 = "sha256-h1HEDE+n0fI6aGTFsgpzdE+L5oI5U1rncpxffTlNBzY="; + sha256 = "sha256-Ii1001dPtnsVjGmIyYDuqrqKBlb15P+3a1+lfwNZM+w="; }; # perl is only used during the check phase. diff --git a/pkgs/development/libraries/science/chemistry/simple-dftd3/python.nix b/pkgs/development/libraries/science/chemistry/simple-dftd3/python.nix new file mode 100644 index 0000000000000..74f24e10f55f2 --- /dev/null +++ b/pkgs/development/libraries/science/chemistry/simple-dftd3/python.nix @@ -0,0 +1,42 @@ +{ buildPythonPackage +, pkg-config +, meson +, simple-dftd3 +, cffi +, numpy +, toml +, qcengine +, pyscf +, ase +, pytestCheckHook +}: + +buildPythonPackage { + inherit (simple-dftd3) pname version src meta; + + # pytest is also required for installation, not only testing + nativeBuildInputs = [ pytestCheckHook ]; + + buildInputs = [ simple-dftd3 ]; + + propagatedBuildInputs = [ + cffi + numpy + toml + ]; + + checkInputs = [ + ase + qcengine + pyscf + ]; + + preConfigure = '' + cd python + ''; + + # The compiled CFFI is not placed correctly before pytest invocation + preCheck = '' + find . -name "_libdftd3*" -exec cp {} ./dftd3/. \; + ''; +} diff --git a/pkgs/development/libraries/science/math/ipopt/default.nix b/pkgs/development/libraries/science/math/ipopt/default.nix index cea4d5b4c6faa..a76c2f878ba7c 100644 --- a/pkgs/development/libraries/science/math/ipopt/default.nix +++ b/pkgs/development/libraries/science/math/ipopt/default.nix @@ -12,13 +12,13 @@ assert (!blas.isILP64) && (!lapack.isILP64); stdenv.mkDerivation rec { pname = "ipopt"; - version = "3.14.13"; + version = "3.14.14"; src = fetchFromGitHub { owner = "coin-or"; repo = "Ipopt"; rev = "releases/${version}"; - sha256 = "sha256-51isH1hlzgbD0JVtGp3NuaGY5l2CeS1S7oVeRYG+vWI="; + sha256 = "sha256-qMPdJVLIXFePhTA6qRr1Pth/BjJ62cj9y8C1HKQJGDQ="; }; CXXDEFS = [ "-DHAVE_RAND" "-DHAVE_CSTRING" "-DHAVE_CSTDIO" ]; diff --git a/pkgs/development/libraries/science/math/liblapack/default.nix b/pkgs/development/libraries/science/math/liblapack/default.nix index 3bf16057f835f..595ba2aa57136 100644 --- a/pkgs/development/libraries/science/math/liblapack/default.nix +++ b/pkgs/development/libraries/science/math/liblapack/default.nix @@ -11,13 +11,13 @@ stdenv.mkDerivation (finalAttrs: { pname = "liblapack"; - version = "3.11"; + version = "3.12.0"; src = fetchFromGitHub { owner = "Reference-LAPACK"; repo = "lapack"; rev = "v${finalAttrs.version}"; - sha256 = "sha256-AYD78u70y8cY19hmM/aDjQEzxO8u9lPWhCFxRe5cqXI="; + sha256 = "sha256-xn9HL4YF8JPka1gwet5bGGo2k505H3RfWpxkUIYNecQ="; }; nativeBuildInputs = [ gfortran cmake ]; diff --git a/pkgs/development/libraries/science/math/magma/generic.nix b/pkgs/development/libraries/science/math/magma/generic.nix index b27b42bf3ae85..7ef60e0418ed6 100644 --- a/pkgs/development/libraries/science/math/magma/generic.nix +++ b/pkgs/development/libraries/science/math/magma/generic.nix @@ -142,6 +142,8 @@ stdenv.mkDerivation { ] ++ lists.optionals rocmSupport [ "-DCMAKE_C_COMPILER=${rocmPackages.clr}/bin/hipcc" "-DCMAKE_CXX_COMPILER=${rocmPackages.clr}/bin/hipcc" + ] ++ lists.optionals (cudaPackages.cudaAtLeast "12.0.0") [ + (lib.cmakeBool "USE_FORTRAN" false) ]; buildFlags = [ diff --git a/pkgs/development/libraries/science/math/mongoose/default.nix b/pkgs/development/libraries/science/math/mongoose/default.nix index 728dff9aa3e5f..29b901277f61a 100644 --- a/pkgs/development/libraries/science/math/mongoose/default.nix +++ b/pkgs/development/libraries/science/math/mongoose/default.nix @@ -7,11 +7,11 @@ }: let - suitesparseVersion = "7.4.0"; + suitesparseVersion = "7.6.0"; in stdenv.mkDerivation { pname = "mongoose"; - version = "3.3.0"; + version = "3.3.2"; outputs = [ "bin" "out" "dev" ]; @@ -19,7 +19,7 @@ stdenv.mkDerivation { owner = "DrTimothyAldenDavis"; repo = "SuiteSparse"; rev = "v${suitesparseVersion}"; - hash = "sha256-oR/lISsa+0NGueJJyutswxOEQVl8MmSVgb/q3GMUCn4="; + hash = "sha256-zZXbUNXxVi4mpI4j4GjyVYraoPFWcuep9q5jl1XdqEo="; }; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/science/math/suitesparse-graphblas/default.nix b/pkgs/development/libraries/science/math/suitesparse-graphblas/default.nix index 8a00d9ae521ea..648e053765295 100644 --- a/pkgs/development/libraries/science/math/suitesparse-graphblas/default.nix +++ b/pkgs/development/libraries/science/math/suitesparse-graphblas/default.nix @@ -1,4 +1,5 @@ -{ lib, stdenv +{ lib +, stdenv , fetchFromGitHub , cmake , gnum4 @@ -6,7 +7,7 @@ stdenv.mkDerivation rec { pname = "suitesparse-graphblas"; - version = "7.4.4"; + version = "9.0.1"; outputs = [ "out" "dev" ]; @@ -14,7 +15,7 @@ stdenv.mkDerivation rec { owner = "DrTimothyAldenDavis"; repo = "GraphBLAS"; rev = "v${version}"; - sha256 = "sha256-4NLYNapIiEXntXHrsyq63jIbuBJxR77X3VbLFbvtT9A="; + hash = "sha256-eNd6jlpW3KiRvOCKvNP5ttpgjPPXt2M2vLhk1Zn4gTE="; }; nativeBuildInputs = [ @@ -22,11 +23,15 @@ stdenv.mkDerivation rec { gnum4 ]; + preConfigure = '' + export HOME=$(mktemp -d) + ''; + meta = with lib; { description = "Graph algorithms in the language of linear algebra"; - homepage = "http://faculty.cse.tamu.edu/davis/GraphBLAS.html"; + homepage = "https://people.engr.tamu.edu/davis/GraphBLAS.html"; license = licenses.asl20; - maintainers = with maintainers; []; + maintainers = with maintainers; [ wegank ]; platforms = with platforms; unix; }; } diff --git a/pkgs/development/libraries/science/math/suitesparse/default.nix b/pkgs/development/libraries/science/math/suitesparse/default.nix index abc2ff9a37012..45ea5900e286d 100644 --- a/pkgs/development/libraries/science/math/suitesparse/default.nix +++ b/pkgs/development/libraries/science/math/suitesparse/default.nix @@ -41,6 +41,7 @@ stdenv.mkDerivation rec { ] ++ lib.optionals enableCuda [ cudaPackages.cuda_cudart.dev cudaPackages.cuda_cudart.lib + cudaPackages.cuda_cccl.dev cudaPackages.libcublas.dev cudaPackages.libcublas.lib ]; diff --git a/pkgs/development/libraries/science/networking/ns-3/default.nix b/pkgs/development/libraries/science/networking/ns-3/default.nix index dd28553d60e90..fa6e5e48f8462 100644 --- a/pkgs/development/libraries/science/networking/ns-3/default.nix +++ b/pkgs/development/libraries/science/networking/ns-3/default.nix @@ -120,7 +120,7 @@ stdenv.mkDerivation rec { "-DPython3_EXECUTABLE=${pythonEnv}/bin/python" "-DNS3_PYTHON_BINDINGS=ON" "-DNS3_DES_METRICS=ON" - "-DNS3_BINDINGS_INSTALL_DIR=lib/${pythonEnv.libPrefix}/site-packages" + "-DNS3_BINDINGS_INSTALL_DIR=${pythonEnv.sitePackages}" "-DNS3_LOG=ON" "-DNS3_ASSERT=ON" "-DNS3_GTK3=ON" diff --git a/pkgs/development/libraries/simdjson/default.nix b/pkgs/development/libraries/simdjson/default.nix index 3a25dd22f203e..768587534778e 100644 --- a/pkgs/development/libraries/simdjson/default.nix +++ b/pkgs/development/libraries/simdjson/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "simdjson"; - version = "3.6.3"; + version = "3.6.4"; src = fetchFromGitHub { owner = "simdjson"; repo = "simdjson"; rev = "v${version}"; - sha256 = "sha256-PRXFZvwod/n27Tx9OALHdSlKsbsrNi5ij70A4ZSoeGc="; + sha256 = "sha256-yIZKlKp4p1HJBAdba+57sGl0ri0gGtjSgZQ16/vDE34="; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/libraries/spglib/default.nix b/pkgs/development/libraries/spglib/default.nix index 724a9f52d509e..4c7fac7e2918e 100644 --- a/pkgs/development/libraries/spglib/default.nix +++ b/pkgs/development/libraries/spglib/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "spglib"; - version = "2.2.0"; # N.B: if you change this, please update: pythonPackages.spglib + version = "2.3.0"; # N.B: if you change this, please update: pythonPackages.spglib src = fetchFromGitHub { owner = "spglib"; repo = "spglib"; rev = "v${version}"; - hash = "sha256-VaTW7n7DTeYBr/PrxPhfzfx/gLxzJikw5aL1tEbMtbs="; + hash = "sha256-S/i0sIg7VwgpnB2Uo0d4FdVcSIb5tcGJ+0URmkNkxe8="; }; nativeBuildInputs = [ cmake gfortran gtest ]; diff --git a/pkgs/development/libraries/spirv-headers/default.nix b/pkgs/development/libraries/spirv-headers/default.nix index 3e18424d6b74e..64362243229b2 100644 --- a/pkgs/development/libraries/spirv-headers/default.nix +++ b/pkgs/development/libraries/spirv-headers/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "spirv-headers"; - version = "1.3.268.0"; + version = "1.3.275.0"; src = fetchFromGitHub { owner = "KhronosGroup"; repo = "SPIRV-Headers"; rev = "vulkan-sdk-${version}"; - hash = "sha256-uOnSTih14bUPtrJgp7vVb3/UfdKsF6jFQqjlFeJ81AI="; + hash = "sha256-/I9dJlBE0kvFvqooKuqMETtOE72Jmva3zIGnq0o4+aE="; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/libraries/sqlite/default.nix b/pkgs/development/libraries/sqlite/default.nix index eb4d975a6e01a..952fc28eae4cf 100644 --- a/pkgs/development/libraries/sqlite/default.nix +++ b/pkgs/development/libraries/sqlite/default.nix @@ -5,8 +5,6 @@ # uses readline & ncurses for a better interactive experience if set to true , interactive ? false -# TODO: can be removed since 3.36 since it is the default now. -, enableDeserialize ? false , gitUpdater }: @@ -54,9 +52,6 @@ stdenv.mkDerivation rec { "-DSQLITE_SECURE_DELETE" "-DSQLITE_MAX_VARIABLE_NUMBER=250000" "-DSQLITE_MAX_EXPR_DEPTH=10000" - ] ++ lib.optionals enableDeserialize [ - # Can be removed in v3.36+, as this will become the default - "-DSQLITE_ENABLE_DESERIALIZE" ]); # Test for features which may not be available at compile time diff --git a/pkgs/development/libraries/srt/default.nix b/pkgs/development/libraries/srt/default.nix index 5ba8039ccff80..be81970413b84 100644 --- a/pkgs/development/libraries/srt/default.nix +++ b/pkgs/development/libraries/srt/default.nix @@ -8,13 +8,13 @@ stdenv.mkDerivation rec { pname = "srt"; - version = "1.5.2"; + version = "1.5.3"; src = fetchFromGitHub { owner = "Haivision"; repo = "srt"; rev = "v${version}"; - sha256 = "sha256-HW5l26k9w4F6IJrtiahU/8/CPY6M/cKn8AgESsntC6A="; + sha256 = "sha256-HmfbBPyR+z5d9/XBvNhosk8pSSPToNtM+V0hEyb2G2w="; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/libraries/talloc/default.nix b/pkgs/development/libraries/talloc/default.nix index bfe38fd4719a9..73cb8a65a162d 100644 --- a/pkgs/development/libraries/talloc/default.nix +++ b/pkgs/development/libraries/talloc/default.nix @@ -13,11 +13,11 @@ stdenv.mkDerivation rec { pname = "talloc"; - version = "2.4.1"; + version = "2.4.2"; src = fetchurl { url = "mirror://samba/talloc/${pname}-${version}.tar.gz"; - sha256 = "sha256-QQpUfwhVcAe+DogZTyGIaDWO3Aq5jJi6jBZ5MNs9M/k="; + sha256 = "sha256-hez55GXiD5j5lQpS6aQR4UMgvFVfolfYdpe356mx2KY="; }; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/tclx/default.nix b/pkgs/development/libraries/tclx/default.nix index 1e6098aa637ae..5e3a73febe9b8 100644 --- a/pkgs/development/libraries/tclx/default.nix +++ b/pkgs/development/libraries/tclx/default.nix @@ -5,13 +5,13 @@ tcl.mkTclDerivation rec { pname = "tclx"; - version = "8.6.2"; + version = "8.6.3"; src = fetchFromGitHub { owner = "flightaware"; repo = "tclx"; rev = "v${version}"; - hash = "sha256-ZYJcaVBM5DQWBFYAcW6fx+ENMWJwHzTOUKYPkLsd6o8="; + hash = "sha256-bzLF6qOF9o24joWnGR7B4S+Doj7zv9iTh/mo50iFbUs="; }; # required in order for tclx to properly detect tclx.tcl at runtime diff --git a/pkgs/development/libraries/tdb/default.nix b/pkgs/development/libraries/tdb/default.nix index 13f55a2dc52b1..1a289f7c2d618 100644 --- a/pkgs/development/libraries/tdb/default.nix +++ b/pkgs/development/libraries/tdb/default.nix @@ -12,11 +12,11 @@ stdenv.mkDerivation rec { pname = "tdb"; - version = "1.4.9"; + version = "1.4.10"; src = fetchurl { url = "mirror://samba/tdb/${pname}-${version}.tar.gz"; - hash = "sha256-CsImBz46LbhkjaevdEy5X1B2alL+6wAdVYsrMht0p2U="; + hash = "sha256-AjOOM8FsIcnilXHO9SPnaytwhjYlT28wxs8ZXUjGLa8="; }; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/tdlib/default.nix b/pkgs/development/libraries/tdlib/default.nix index f1c6a3d1b7288..d6e3aa57e9866 100644 --- a/pkgs/development/libraries/tdlib/default.nix +++ b/pkgs/development/libraries/tdlib/default.nix @@ -2,7 +2,7 @@ stdenv.mkDerivation rec { pname = "tdlib"; - version = "1.8.23"; + version = "1.8.24"; src = fetchFromGitHub { owner = "tdlib"; @@ -11,8 +11,8 @@ stdenv.mkDerivation rec { # The tdlib authors do not set tags for minor versions, but # external programs depending on tdlib constrain the minor # version, hence we set a specific commit with a known version. - rev = "27c3eaeb4964bd5f18d8488e354abde1a4383e49"; - hash = "sha256-TxgzZn/OF5b5FWzwnOWIozH+1d7O0RG3h+WKV10rxpE="; + rev = "c5c55092dd61b9eb15d6bbfd0f02c04c593450e7"; + hash = "sha256-jqS3PGg42W15QBgpL1PNU3xJdk67g8u0THN/4hW5i88="; }; buildInputs = [ gperf openssl readline zlib ]; diff --git a/pkgs/development/libraries/tecla/default.nix b/pkgs/development/libraries/tecla/default.nix deleted file mode 100644 index 4c6ec8e01691c..0000000000000 --- a/pkgs/development/libraries/tecla/default.nix +++ /dev/null @@ -1,28 +0,0 @@ -{ lib, stdenv, fetchurl }: - -stdenv.mkDerivation rec { - pname = "tecla"; - version = "1.6.3"; - - src = fetchurl { - url = "https://www.astro.caltech.edu/~mcs/tecla/libtecla-${version}.tar.gz"; - sha256 = "06pfq5wa8d25i9bdjkp4xhms5101dsrbg82riz7rz1a0a32pqxgj"; - }; - - postPatch = '' - substituteInPlace install-sh \ - --replace "stripprog=" "stripprog=\$STRIP # " - ''; - - env = lib.optionalAttrs stdenv.cc.isClang { - NIX_CFLAGS_COMPILE = "-Wno-error=implicit-function-declaration"; - }; - - meta = { - description = "Command-line editing library"; - homepage = "https://www.astro.caltech.edu/~mcs/tecla/"; - license = "as-is"; - mainProgram = "enhance"; - platforms = lib.platforms.unix; - }; -} diff --git a/pkgs/development/libraries/tiledb/default.nix b/pkgs/development/libraries/tiledb/default.nix index f8540d4ffaa06..28b14d3a8a5be 100644 --- a/pkgs/development/libraries/tiledb/default.nix +++ b/pkgs/development/libraries/tiledb/default.nix @@ -58,6 +58,9 @@ stdenv.mkDerivation rec { cmake/Modules/FindOpenSSL_EP.cmake ''; + # upstream will hopefully fix this in some newer release + env.CXXFLAGS = "-include random"; + # (bundled) blosc headers have a warning on some archs that it will be using # unaccelerated routines. cmakeFlags = [ diff --git a/pkgs/development/libraries/ubus/default.nix b/pkgs/development/libraries/ubus/default.nix index 4419b4e67a66c..2150ed7b0e826 100644 --- a/pkgs/development/libraries/ubus/default.nix +++ b/pkgs/development/libraries/ubus/default.nix @@ -2,12 +2,12 @@ stdenv.mkDerivation { pname = "ubus"; - version = "unstable-2023-11-28"; + version = "unstable-2023-12-18"; src = fetchgit { url = "https://git.openwrt.org/project/ubus.git"; - rev = "f84eb5998c6ea2d34989ca2d3254e56c66139313"; - hash = "sha256-5pIovqIeJczWAA9KQPKFnTnGRrIZVdSNdxBR8AEFtO4="; + rev = "65bb027054def3b94a977229fd6ad62ddd32345b"; + hash = "sha256-n82Ub0IiuvWbnlDCoN+0hjo/1PbplEbc56kuOYMrHxQ="; }; cmakeFlags = [ "-DBUILD_LUA=OFF" ]; diff --git a/pkgs/development/libraries/utf8cpp/default.nix b/pkgs/development/libraries/utf8cpp/default.nix index 1ca767d98cb62..60ae45d2cd8e4 100644 --- a/pkgs/development/libraries/utf8cpp/default.nix +++ b/pkgs/development/libraries/utf8cpp/default.nix @@ -2,14 +2,14 @@ stdenv.mkDerivation rec { pname = "utf8cpp"; - version = "4.0.3"; + version = "4.0.5"; src = fetchFromGitHub { owner = "nemtrif"; repo = "utfcpp"; rev = "v${version}"; fetchSubmodules = true; - hash = "sha256-oUr476HMBYzX64x28Kcudw0B1BVqLUPVVdRzRe82AOc="; + hash = "sha256-Z27/31obVErsmW1b1SVcr45nKlFu01RqqpTMwS0LqJ8="; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/libraries/vigra/default.nix b/pkgs/development/libraries/vigra/default.nix index 320b43f0e51b5..677406d275a85 100644 --- a/pkgs/development/libraries/vigra/default.nix +++ b/pkgs/development/libraries/vigra/default.nix @@ -44,7 +44,7 @@ stdenv.mkDerivation rec { python ]; - preConfigure = "cmakeFlags+=\" -DVIGRANUMPY_INSTALL_DIR=$out/lib/${python.libPrefix}/site-packages\""; + preConfigure = "cmakeFlags+=\" -DVIGRANUMPY_INSTALL_DIR=$out/${python.sitePackages}\""; cmakeFlags = [ "-DWITH_OPENEXR=1" ] ++ lib.optionals (stdenv.hostPlatform.system == "x86_64-linux") diff --git a/pkgs/development/libraries/vulkan-headers/default.nix b/pkgs/development/libraries/vulkan-headers/default.nix index f6c9dcb953e39..dc17404c84802 100644 --- a/pkgs/development/libraries/vulkan-headers/default.nix +++ b/pkgs/development/libraries/vulkan-headers/default.nix @@ -1,7 +1,7 @@ { lib, stdenv, fetchFromGitHub, cmake }: stdenv.mkDerivation rec { pname = "vulkan-headers"; - version = "1.3.268.0"; + version = "1.3.275.0"; nativeBuildInputs = [ cmake ]; @@ -9,7 +9,7 @@ stdenv.mkDerivation rec { owner = "KhronosGroup"; repo = "Vulkan-Headers"; rev = "vulkan-sdk-${version}"; - hash = "sha256-CDjWTXXnUgj9QaLDNuSVy+wf8If5LehwOZ0t0Fuh2Ro="; + hash = "sha256-kBOkj7mr4stPXUCBhNJpNL3A+9BebEwrIBEIroxdH8Y="; }; passthru.updateScript = ./update.sh; diff --git a/pkgs/development/libraries/vulkan-headers/update.sh b/pkgs/development/libraries/vulkan-headers/update.sh index da4e42ded84a2..dd3fac2ee4dd1 100755 --- a/pkgs/development/libraries/vulkan-headers/update.sh +++ b/pkgs/development/libraries/vulkan-headers/update.sh @@ -11,6 +11,7 @@ SDK_PACKAGES=( "vulkan-tools-lunarg" "vulkan-extension-layer" "vulkan-utility-libraries" + "vulkan-volk" "spirv-headers" "spirv-cross" "spirv-tools" diff --git a/pkgs/development/libraries/vulkan-loader/default.nix b/pkgs/development/libraries/vulkan-loader/default.nix index 068c1d3d2c2a8..958cc2dadc7ba 100644 --- a/pkgs/development/libraries/vulkan-loader/default.nix +++ b/pkgs/development/libraries/vulkan-loader/default.nix @@ -3,13 +3,13 @@ stdenv.mkDerivation rec { pname = "vulkan-loader"; - version = "1.3.268.0"; + version = "1.3.275.0"; src = fetchFromGitHub { owner = "KhronosGroup"; repo = "Vulkan-Loader"; rev = "vulkan-sdk-${version}"; - hash = "sha256-TDn8eVz1fhGfvUiGcxqOk2BN9tuIF5+ssIXtOo3weS0="; + hash = "sha256-53PUXAWiK38ciV6oMvD7ZHdXi4RU4r0RmDWUUHU3mE0="; }; patches = [ ./fix-pkgconfig.patch ]; diff --git a/pkgs/development/libraries/vulkan-utility-libraries/default.nix b/pkgs/development/libraries/vulkan-utility-libraries/default.nix index 41d1854692fd9..301311e124128 100644 --- a/pkgs/development/libraries/vulkan-utility-libraries/default.nix +++ b/pkgs/development/libraries/vulkan-utility-libraries/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation (finalAttrs: { pname = "vulkan-utility-libraries"; - version = "1.3.268"; + version = "1.3.275.0"; src = fetchFromGitHub { owner = "KhronosGroup"; repo = "Vulkan-Utility-Libraries"; - rev = "v${finalAttrs.version}"; - hash = "sha256-l6PiHCre/JQg8PSs1k/0Zzfwwv55AqVdZtBbjeKLS6E="; + rev = "vulkan-sdk-${finalAttrs.version}"; + hash = "sha256-gvia+Xb9BpOjPARKo3Sgp85Bfh1roFZ2PzCtXVFYeIU="; }; nativeBuildInputs = [ cmake python3 ]; diff --git a/pkgs/development/libraries/wasilibc/default.nix b/pkgs/development/libraries/wasilibc/default.nix index 4c49788464d46..c0714a78556a3 100644 --- a/pkgs/development/libraries/wasilibc/default.nix +++ b/pkgs/development/libraries/wasilibc/default.nix @@ -8,7 +8,7 @@ let pname = "wasilibc"; - version = "20"; + version = "21"; in stdenv.mkDerivation { inherit pname version; @@ -17,7 +17,7 @@ stdenv.mkDerivation { owner = "WebAssembly"; repo = "wasi-libc"; rev = "refs/tags/wasi-sdk-${version}"; - hash = "sha256-H92PDrH1FL7S3eMCK1+wqclryjhwghl21bOlRCAr1U4="; + hash = "sha256-1LsMpO29y79twVrUsuM/JvC7hK8O6Yey4Ard/S3Mvvc="; fetchSubmodules = true; }; diff --git a/pkgs/development/libraries/waylib/default.nix b/pkgs/development/libraries/waylib/default.nix new file mode 100644 index 0000000000000..9aa211ffd3e08 --- /dev/null +++ b/pkgs/development/libraries/waylib/default.nix @@ -0,0 +1,74 @@ +{ stdenv +, lib +, fetchFromGitHub +, cmake +, pkg-config +, wayland-scanner +, wrapQtAppsHook +, qtbase +, qtquick3d +, qwlroots +, wayland +, wayland-protocols +, wlr-protocols +, pixman +, libdrm +, nixos-artwork +}: + +stdenv.mkDerivation (finalAttrs: { + pname = "waylib"; + version = "0.1.1"; + + src = fetchFromGitHub { + owner = "vioken"; + repo = "waylib"; + rev = finalAttrs.version; + hash = "sha256-3IdrChuXQyQGhJ/7kTqmkV0PyuSNP53Y0Po01Fc9Qi0="; + }; + + postPatch = '' + substituteInPlace examples/tinywl/OutputDelegate.qml \ + --replace "/usr/share/wallpapers/deepin/desktop.jpg" \ + "${nixos-artwork.wallpapers.simple-blue}/share/backgrounds/nixos/nix-wallpaper-simple-blue.png" + ''; + + nativeBuildInputs = [ + cmake + pkg-config + wayland-scanner + wrapQtAppsHook + ]; + + buildInputs = [ + qtbase + qtquick3d + wayland + wayland-protocols + wlr-protocols + pixman + libdrm + ]; + + propagatedBuildInputs = [ + qwlroots + ]; + + cmakeFlags = [ + (lib.cmakeBool "INSTALL_TINYWL" true) + ]; + + strictDeps = true; + + outputs = [ "out" "dev" "bin" ]; + + meta = { + description = "A wrapper for wlroots based on Qt"; + homepage = "https://github.com/vioken/waylib"; + license = with lib.licenses; [ gpl3Only lgpl3Only asl20 ]; + outputsToInstall = [ "out" ]; + platforms = lib.platforms.linux; + maintainers = with lib.maintainers; [ rewine ]; + }; +}) + diff --git a/pkgs/development/libraries/wxsqlite3/default.nix b/pkgs/development/libraries/wxsqlite3/default.nix index d55935d0ea826..d84c3ec1956d8 100644 --- a/pkgs/development/libraries/wxsqlite3/default.nix +++ b/pkgs/development/libraries/wxsqlite3/default.nix @@ -12,13 +12,13 @@ stdenv.mkDerivation rec { pname = "wxsqlite3"; - version = "4.9.8"; + version = "4.9.9"; src = fetchFromGitHub { owner = "utelle"; repo = "wxsqlite3"; rev = "v${version}"; - hash = "sha256-spc2lA6pgHfT4F0lHGhVFpvIIRmDVgfvzZHUqPB/Y5w="; + hash = "sha256-YvQEAqiXwooCxUIZbIYhccbpVjYeFIp6d3dLeUP1RpE="; }; nativeBuildInputs = [ autoreconfHook ]; diff --git a/pkgs/development/libraries/xapian/default.nix b/pkgs/development/libraries/xapian/default.nix index 243ec53a3234c..f9fe5bac07fe5 100644 --- a/pkgs/development/libraries/xapian/default.nix +++ b/pkgs/development/libraries/xapian/default.nix @@ -28,7 +28,12 @@ let enableParallelBuilding = true; doCheck = true; - env.AUTOMATED_TESTING = true; # https://trac.xapian.org/changeset/8be35f5e1/git + + env = { + AUTOMATED_TESTING = true; # https://trac.xapian.org/changeset/8be35f5e1/git + } // lib.optionalAttrs stdenv.is32bit { + NIX_CFLAGS_COMPILE = "-fpermissive"; + }; # the configure script thinks that Darwin has ___exp10 # but it’s not available on my systems (or hydra apparently) diff --git a/pkgs/development/libraries/xdg-desktop-portal-wlr/default.nix b/pkgs/development/libraries/xdg-desktop-portal-wlr/default.nix index 8f5d5a3c01223..e215028d73520 100644 --- a/pkgs/development/libraries/xdg-desktop-portal-wlr/default.nix +++ b/pkgs/development/libraries/xdg-desktop-portal-wlr/default.nix @@ -21,13 +21,13 @@ stdenv.mkDerivation rec { pname = "xdg-desktop-portal-wlr"; - version = "0.7.0"; + version = "0.7.1"; src = fetchFromGitHub { owner = "emersion"; repo = pname; rev = "v${version}"; - sha256 = "sha256-EwBHkXFEPAEgVUGC/0e2Bae/rV5lec1ttfbJ5ce9cKw="; + sha256 = "sha256-GIIDeZMIGUiZV0IUhcclRVThE5LKaqVc5VwnNT8beNU="; }; strictDeps = true; diff --git a/pkgs/development/libraries/xml-tooling-c/default.nix b/pkgs/development/libraries/xml-tooling-c/default.nix index 8a415a4df77c9..f58f50b4a72f4 100644 --- a/pkgs/development/libraries/xml-tooling-c/default.nix +++ b/pkgs/development/libraries/xml-tooling-c/default.nix @@ -4,12 +4,12 @@ stdenv.mkDerivation rec { pname = "xml-tooling-c"; - version = "3.0.4"; + version = "3.2.4"; src = fetchgit { url = "https://git.shibboleth.net/git/cpp-xmltooling.git"; rev = version; - sha256 = "0frj4w70l06nva6dvdcivgm1ax69rqbjdzzbgp0sxhiqhddslbas"; + sha256 = "sha256-FQ109ahOSWj3hvaxu1r/0FTpCuWaLgSEKM8NBio+wqU="; }; buildInputs = [ boost curl openssl log4shib xercesc xml-security-c ]; diff --git a/pkgs/development/libraries/xsimd/default.nix b/pkgs/development/libraries/xsimd/default.nix index 87da2c546b866..d775cef4d6734 100644 --- a/pkgs/development/libraries/xsimd/default.nix +++ b/pkgs/development/libraries/xsimd/default.nix @@ -54,7 +54,7 @@ stdenv.mkDerivation (finalAttrs: { description = "C++ wrappers for SIMD intrinsics"; homepage = "https://github.com/xtensor-stack/xsimd"; license = licenses.bsd3; - maintainers = with maintainers; [ tobim ]; + maintainers = with maintainers; [ tobim doronbehar ]; platforms = platforms.all; }; }) diff --git a/pkgs/development/libraries/xxHash/default.nix b/pkgs/development/libraries/xxHash/default.nix index f7631de1bf293..c78fc302afe49 100644 --- a/pkgs/development/libraries/xxHash/default.nix +++ b/pkgs/development/libraries/xxHash/default.nix @@ -37,6 +37,7 @@ stdenv.mkDerivation rec { ''; homepage = "https://github.com/Cyan4973/xxHash"; license = with licenses; [ bsd2 gpl2 ]; + mainProgram = "xxhsum"; maintainers = with maintainers; [ orivej ]; platforms = platforms.all; }; diff --git a/pkgs/development/libraries/zxing-cpp/default.nix b/pkgs/development/libraries/zxing-cpp/default.nix index 1c010638693e7..cd5d105511920 100644 --- a/pkgs/development/libraries/zxing-cpp/default.nix +++ b/pkgs/development/libraries/zxing-cpp/default.nix @@ -9,13 +9,13 @@ stdenv.mkDerivation (finalAttrs: { pname = "zxing-cpp"; - version = "2.1.0"; + version = "2.2.1"; src = fetchFromGitHub { owner = "zxing-cpp"; repo = "zxing-cpp"; rev = "v${finalAttrs.version}"; - hash = "sha256-B/jGsHImRfj0iEio2b6R6laWBI1LL3OI407O7sren8s="; + hash = "sha256-teFspdATn9M7Z1vSr/7PdJx/xAv+TVai8rIekxqpBZk="; }; nativeBuildInputs = [ diff --git a/pkgs/development/lisp-modules/nix-cl.nix b/pkgs/development/lisp-modules/nix-cl.nix index 327f4aa65aff5..6c52e9254f37a 100644 --- a/pkgs/development/lisp-modules/nix-cl.nix +++ b/pkgs/development/lisp-modules/nix-cl.nix @@ -145,7 +145,7 @@ let ... } @ args: - stdenv.mkDerivation (rec { + (stdenv.mkDerivation (rec { inherit version nativeLibs javaLibs lispLibs systems asds pkg program flags faslExt @@ -226,7 +226,14 @@ let meta = (args.meta or {}) // { maintainers = args.meta.maintainers or lib.teams.lisp.members; }; - }))); + })) // { + # Useful for overriding + # Overriding code would prefer to use pname from the attribute set + # However, pname is extended with the implementation name + # Moreover, it is used in the default list of systems to load + # So we pass the original pname + pname = args.pname; + })); # Build the set of lisp packages using `lisp` # These packages are defined manually for one reason or another: diff --git a/pkgs/development/lisp-modules/packages.nix b/pkgs/development/lisp-modules/packages.nix index aef2b84b1c047..e2d2178f9c7d2 100644 --- a/pkgs/development/lisp-modules/packages.nix +++ b/pkgs/development/lisp-modules/packages.nix @@ -362,7 +362,7 @@ let nyxt-gtk = build-asdf-system { pname = "nyxt"; - version = "3.11.0"; + version = "3.11.1"; lispLibs = (with super; [ alexandria @@ -470,8 +470,8 @@ let src = pkgs.fetchFromGitHub { owner = "atlas-engineer"; repo = "nyxt"; - rev = "3.11.0"; - hash = "sha256-Nw2r3FdqwxHlq8CrZo7Z423xe0rR5zu+U4dDPdG880M="; + rev = "3.11.1"; + hash = "sha256-7qnelRTZBJ+1CbZv5Bpzd3uOjcSr/VLkcyo2yK/U/4A="; }; nativeBuildInputs = [ pkgs.makeWrapper ]; @@ -507,7 +507,7 @@ let installPhase = '' mkdir -pv $out cp -r * $out - rm -v $out/nyxt + rm -fv $out/nyxt mkdir -p $out/bin cp -v nyxt $out/bin wrapProgram $out/bin/nyxt \ diff --git a/pkgs/development/lua-modules/generated-packages.nix b/pkgs/development/lua-modules/generated-packages.nix index 2afd4582c3613..9fdcc3b202ac2 100644 --- a/pkgs/development/lua-modules/generated-packages.nix +++ b/pkgs/development/lua-modules/generated-packages.nix @@ -460,14 +460,14 @@ buildLuarocksPackage { fidget-nvim = callPackage({ buildLuarocksPackage, fetchurl, fetchzip, lua, luaOlder }: buildLuarocksPackage { pname = "fidget.nvim"; - version = "1.0.0-1"; + version = "1.1.0-1"; knownRockspec = (fetchurl { - url = "mirror://luarocks/fidget.nvim-1.0.0-1.rockspec"; - sha256 = "09hhm95gvdxd6n9mz2y012gmvs05mpfr4w0qgwcr8zb4kz11nqlw"; + url = "mirror://luarocks/fidget.nvim-1.1.0-1.rockspec"; + sha256 = "0pgjbsqp6bs9kwi0qphihwhl47j1lzdgg3xfa6msikrcf8d7j0hf"; }).outPath; src = fetchzip { - url = "https://github.com/j-hui/fidget.nvim/archive/fa1445fe7230845ea66b2c8bec3398fe5d900307.zip"; - sha256 = "0krvmyww42dx4q0gxv0qdyv14zxbbl5g4g8pa5dl5qdlznw9vagq"; + url = "https://github.com/j-hui/fidget.nvim/archive/300018af4abd00610a345e382ca1f4b7ba420f77.zip"; + sha256 = "0bwjcqkb735wqnzc8rngvpq1b2rxgc7m0arjypvnvzsxw6wd1f61"; }; disabled = (luaOlder "5.1"); @@ -2860,6 +2860,29 @@ buildLuarocksPackage { }; }) {}; +nvim-nio = callPackage({ buildLuarocksPackage, fetchurl, fetchzip, lua, luaOlder }: +buildLuarocksPackage { + pname = "nvim-nio"; + version = "1.2.0-1"; + knownRockspec = (fetchurl { + url = "mirror://luarocks/nvim-nio-1.2.0-1.rockspec"; + sha256 = "0a62iv1lyx8ldrdbip6az0ixm8dmpcai3k8j5jsf49cr4zjpcjzk"; + }).outPath; + src = fetchzip { + url = "https://github.com/nvim-neotest/nvim-nio/archive/11864149f47e0c7a38c4dadbcea8fc17c968556e.zip"; + sha256 = "141py3csgbijpqhscgmsbnkg4lbx7ma7nwpj0akfc7v37c143dq3"; + }; + + disabled = (luaOlder "5.1"); + propagatedBuildInputs = [ lua ]; + + meta = { + homepage = "https://github.com/nvim-neotest/nvim-nio"; + description = "A library for asynchronous IO in Neovim"; + license.fullName = "MIT"; + }; +}) {}; + penlight = callPackage({ buildLuarocksPackage, fetchgit, lua, luaOlder, luafilesystem }: buildLuarocksPackage { pname = "penlight"; @@ -2948,6 +2971,29 @@ buildLuarocksPackage { }; }) {}; +rocks-nvim = callPackage({ buildLuarocksPackage, fetchurl, fetchzip, fidget-nvim, fzy, lua, luaOlder, nvim-nio, toml, toml-edit }: +buildLuarocksPackage { + pname = "rocks.nvim"; + version = "2.7.3-1"; + knownRockspec = (fetchurl { + url = "mirror://luarocks/rocks.nvim-2.7.3-1.rockspec"; + sha256 = "1nv6ym32d9vk69c6mg2i4bzn1lq0p1c039g5scf7482rx029zvnh"; + }).outPath; + src = fetchzip { + url = "https://github.com/nvim-neorocks/rocks.nvim/archive/v2.7.3.zip"; + sha256 = "02s7bqskfpk2xbipryvv7ybxl3gjllmn8wa8by1sqmmb4p56836j"; + }; + + disabled = (luaOlder "5.1"); + propagatedBuildInputs = [ fidget-nvim fzy lua nvim-nio toml toml-edit ]; + + meta = { + homepage = "https://github.com/nvim-neorocks/rocks.nvim"; + description = "Neovim plugin management inspired by Cargo."; + license.fullName = "GPL-3.0"; + }; +}) {}; + rest-nvim = callPackage({ buildLuarocksPackage, fetchurl, fetchzip, lua, luaOlder }: buildLuarocksPackage { pname = "rest.nvim"; diff --git a/pkgs/development/lua-modules/overrides.nix b/pkgs/development/lua-modules/overrides.nix index 1b8dce7e1fa5d..20641092e7b19 100644 --- a/pkgs/development/lua-modules/overrides.nix +++ b/pkgs/development/lua-modules/overrides.nix @@ -32,6 +32,7 @@ , libuv , libxcrypt , libyaml +, luajitPackages , mariadb , magic-enum , mpfr @@ -155,6 +156,13 @@ with prev; */ }); + image-nvim = prev.image-nvim.overrideAttrs (oa: { + propagatedBuildInputs = [ + lua + luajitPackages.magick + ]; + }); + ldbus = prev.ldbus.overrideAttrs (oa: { extraVariables = { DBUS_DIR = "${dbus.lib}"; diff --git a/pkgs/development/misc/umr/default.nix b/pkgs/development/misc/umr/default.nix index b83cb91a91b53..37177f926b681 100644 --- a/pkgs/development/misc/umr/default.nix +++ b/pkgs/development/misc/umr/default.nix @@ -1,28 +1,50 @@ -{ lib, stdenv, fetchgit, bash-completion, cmake, pkg-config -, json_c, libdrm, libpciaccess, llvmPackages, nanomsg, ncurses, SDL2 +{ lib +, stdenv + +, fetchFromGitLab + +, cmake +, pkg-config + +, libdrm +, mesa # libgbm +, libpciaccess +, llvmPackages +, nanomsg +, ncurses +, SDL2 +, bash-completion + +, nix-update-script }: stdenv.mkDerivation rec { pname = "umr"; - version = "unstable-2022-08-23"; + version = "1.0.8"; - src = fetchgit { - url = "https://gitlab.freedesktop.org/tomstdenis/umr"; - rev = "87f814b1ffdbac8bfddd8529d344a7901cd7e112"; - hash = "sha256-U1VP1AicSGWzBwzz99i7+3awATZocw5jaqtAxuRNaBE="; + src = fetchFromGitLab { + domain = "gitlab.freedesktop.org"; + owner = "tomstdenis"; + repo = "umr"; + rev = version; + hash = "sha256-ODkTYHDrKWNvjiEeIyfsCByf7hyr5Ps9ytbKb3253bU="; }; - nativeBuildInputs = [ cmake pkg-config llvmPackages.llvm.dev ]; + nativeBuildInputs = [ + cmake + pkg-config + ]; buildInputs = [ - bash-completion - json_c libdrm + mesa libpciaccess llvmPackages.llvm nanomsg ncurses SDL2 + + bash-completion # Tries to create bash-completions in /var/empty otherwise? ]; # Remove static libraries (there are no dynamic libraries in there) @@ -30,6 +52,8 @@ stdenv.mkDerivation rec { rm -r $out/lib ''; + passthru.updateScript = nix-update-script { }; + meta = with lib; { description = "A userspace debugging and diagnostic tool for AMD GPUs"; homepage = "https://gitlab.freedesktop.org/tomstdenis/umr"; diff --git a/pkgs/development/mobile/genymotion/default.nix b/pkgs/development/mobile/genymotion/default.nix index b3ebaf7130581..a70000ca56a5a 100644 --- a/pkgs/development/mobile/genymotion/default.nix +++ b/pkgs/development/mobile/genymotion/default.nix @@ -1,5 +1,6 @@ { stdenv, lib, fetchurl, makeWrapper, which, zlib, libGL, glib, xorg, libxkbcommon , xdg-utils, libXrender, fontconfig, freetype, systemd, libpulseaudio +, cairo, gdk-pixbuf, gtk3, pixman # For glewinfo , libXmu, libXi, libXext }: @@ -19,6 +20,10 @@ let freetype systemd libpulseaudio + cairo + gdk-pixbuf + gtk3 + pixman ]; libPath = lib.makeLibraryPath packages; in @@ -31,8 +36,7 @@ stdenv.mkDerivation rec { sha256 = "sha256-CS1A9udt47bhgnYJqqkCG3z4XaPVHmz417VTsY2ccOA="; }; - nativeBuildInputs = [ makeWrapper ]; - buildInputs = [ which xdg-utils ]; + nativeBuildInputs = [ makeWrapper which xdg-utils ]; unpackPhase = '' mkdir -p phony-home $out/share/applications @@ -73,6 +77,8 @@ stdenv.mkDerivation rec { patchExecutable genymotion patchExecutable player + patchExecutable qemu/x86_64/bin/qemu-img + patchExecutable qemu/x86_64/bin/qemu-system-x86_64 patchTool adb patchTool aapt diff --git a/pkgs/development/mobile/titaniumenv/default.nix b/pkgs/development/mobile/titaniumenv/default.nix index 2f1459ef3e048..74865edab54cf 100644 --- a/pkgs/development/mobile/titaniumenv/default.nix +++ b/pkgs/development/mobile/titaniumenv/default.nix @@ -3,7 +3,6 @@ rec { titaniumsdk = let titaniumSdkFile = if tiVersion == "8.2.1.GA" then ./titaniumsdk-8.2.nix - else if tiVersion == "7.5.1.GA" then ./titaniumsdk-7.5.nix else if tiVersion == "8.3.2.GA" then ./titaniumsdk-8.3.nix else throw "Titanium version not supported: "+tiVersion; in diff --git a/pkgs/development/mobile/titaniumenv/titaniumsdk-7.5.nix b/pkgs/development/mobile/titaniumenv/titaniumsdk-7.5.nix deleted file mode 100644 index a42a9c20923d9..0000000000000 --- a/pkgs/development/mobile/titaniumenv/titaniumsdk-7.5.nix +++ /dev/null @@ -1,111 +0,0 @@ -{ stdenv, fetchurl, unzip, makeWrapper }: - -let - # Gradle is a build system that bootstraps itself. This is what it actually - # downloads in the bootstrap phase. - gradleAllZip = fetchurl { - url = "http://services.gradle.org/distributions/gradle-4.1-all.zip"; - sha256 = "1rcrh263vq7a0is800y5z36jj97p67c6zpqzzfcbr7r0qaxb61sw"; - }; - - # A Titanium-Android build requires proguard plugins. We create a fake - # repository so that Gradle does not attempt to download them in the builder. - # Since there are only 3 plugins required, this is still (sort of) manageable - # without a generator. - proguardVersion = "5.3.3"; - - proguardGradlePOM = fetchurl { - url = "mirror://maven/net/sf/proguard/proguard-gradle/${proguardVersion}/proguard-gradle-${proguardVersion}.pom"; - sha256 = "03v9zm3ykfkyb5cs5ald07ph103fh68d5c33rv070r29p71dwszj"; - }; - proguardGradleJAR = fetchurl { - url = "mirror://maven/net/sf/proguard/proguard-gradle/${proguardVersion}/proguard-gradle-${proguardVersion}.jar"; - sha256 = "0shhpsjfc5gam15jnv1hk718v5c7vi7dwdc3gvmnid6dc85kljzk"; - }; - proguardParentPOM = fetchurl { - url = "mirror://maven/net/sf/proguard/proguard-parent/${proguardVersion}/proguard-parent-${proguardVersion}.pom"; - sha256 = "0mv0zbwyw8xa4mkc5kw69y5xqashkz9gp123akfvh9f6152l3202"; - }; - proguardBasePOM = fetchurl { - url = "mirror://maven/net/sf/proguard/proguard-base/${proguardVersion}/proguard-base-${proguardVersion}.pom"; - sha256 = "1jnr6zsxfimb8wglqlwa6rrdc3g3nqf1dyw0k2dq9cj0q4pgn7p5"; - }; - proguardBaseJAR = fetchurl { - url = "mirror://maven/net/sf/proguard/proguard-base/${proguardVersion}/proguard-base-${proguardVersion}.jar"; - sha256 = "11nwdb9y84cghcx319nsjjf9m035s4s1184zrhzpvaxq2wvqhbhx"; - }; - - # Put the downloaded plugins in a fake Maven repository - fakeMavenRepo = stdenv.mkDerivation { - name = "fake-maven-repo"; - buildCommand = '' - mkdir -p $out - cd $out - mkdir -p net/sf/proguard/proguard-gradle/${proguardVersion} - cp ${proguardGradlePOM} net/sf/proguard/proguard-gradle/${proguardVersion}/proguard-gradle-${proguardVersion}.pom - cp ${proguardGradleJAR} net/sf/proguard/proguard-gradle/${proguardVersion}/proguard-gradle-${proguardVersion}.jar - mkdir -p net/sf/proguard/proguard-parent/${proguardVersion} - cp ${proguardParentPOM} net/sf/proguard/proguard-parent/${proguardVersion}/proguard-parent-${proguardVersion}.pom - mkdir -p net/sf/proguard/proguard-base/${proguardVersion} - cp ${proguardBasePOM} net/sf/proguard/proguard-base/${proguardVersion}/proguard-base-${proguardVersion}.pom - cp ${proguardBaseJAR} net/sf/proguard/proguard-base/${proguardVersion}/proguard-base-${proguardVersion}.jar - ''; - }; -in -stdenv.mkDerivation { - pname = "mobilesdk"; - version = "7.5.1.GA"; - - src = - if (stdenv.system == "i686-linux" || stdenv.system == "x86_64-linux") then - fetchurl { - url = "https://builds.appcelerator.com/mobile/7_5_X/mobilesdk-7.5.1.v20190124152315-linux.zip"; - sha256 = "1ihyh6szl9a2gbdgv13msd3g7i3xi9ifmgsh6v562hqlfi4lixng"; - } - else if stdenv.system == "x86_64-darwin" then - fetchurl { - url = "https://builds.appcelerator.com/mobile/7_5_X/mobilesdk-7.5.1.v20190124152315-osx.zip"; - sha256 = "1whs1j7fkk2hxr4nxq50d7ic5wj83b1i1jl0p722sqbvkmgxssa2"; - } - else throw "Platform: ${stdenv.system} not supported!"; - - nativeBuildInputs = [ makeWrapper unzip ]; - - buildCommand = '' - mkdir -p $out - cd $out - (yes y | unzip $src) || true - - # Rename ugly version number - cd mobilesdk/* - mv * 7.5.1.GA - cd * - - # Patch bundled gradle build infrastructure to make shebangs work - patchShebangs android/templates/gradle - - # Substitute the gradle-all zip URL by a local file to prevent downloads from happening while building an Android app - sed -i -e "s|distributionUrl=|#distributionUrl=|" android/templates/gradle/gradle/wrapper/gradle-wrapper.properties - cp ${gradleAllZip} android/templates/gradle/gradle/wrapper/gradle-4.1-all.zip - echo "distributionUrl=gradle-4.1-all.zip" >> android/templates/gradle/gradle/wrapper/gradle-wrapper.properties - - # Patch maven central repository with our own local directory. This prevents the builder from downloading Maven artifacts - sed -i -e 's|mavenCentral()|maven { url "${fakeMavenRepo}" }|' android/templates/build/proguard.gradle - - # Patch the strip frameworks script in the iPhone build template to not let - # it skip the strip phase. This is caused by an assumption on the file - # permissions in which Nix deviates from the standard. - sed -i -e "s|-perm +111|-perm /111|" iphone/templates/build/strip-frameworks.sh - - # Patch some executables - - ${if stdenv.system == "i686-linux" then - '' - patchelf --set-interpreter ${stdenv.cc.libc}/lib/ld-linux.so.2 android/titanium_prep.linux32 - '' - else lib.optionalString (stdenv.system == "x86_64-linux") '' - patchelf --set-interpreter ${stdenv.cc.libc}/lib/ld-linux-x86-64.so.2 android/titanium_prep.linux64 - '' - } - ''; -} diff --git a/pkgs/development/node-packages/aliases.nix b/pkgs/development/node-packages/aliases.nix index 84e2dfa1289bc..34751db8f1939 100644 --- a/pkgs/development/node-packages/aliases.nix +++ b/pkgs/development/node-packages/aliases.nix @@ -49,6 +49,8 @@ mapAliases { "@mermaid-js/mermaid-cli" = pkgs.mermaid-cli; # added 2023-10-01 "@nerdwallet/shepherd" = pkgs.shepherd; # added 2023-09-30 "@nestjs/cli" = pkgs.nest-cli; # Added 2023-05-06 + "@tailwindcss/language-server" = pkgs.tailwindcss-language-server; # added 2024-01-22 + "@withgraphite/graphite-cli" = pkgs.graphite-cli; # added 2024-01-25 "@zwave-js/server" = pkgs.zwave-js-server; # Added 2023-09-09 alloy = pkgs.titanium-alloy; # added 2023-08-17 antennas = pkgs.antennas; # added 2023-07-30 @@ -81,12 +83,14 @@ mapAliases { inherit (pkgs) gitmoji-cli; # added 2023-09-23 glob = pkgs.node-glob; # added 2023-08-18 inherit (pkgs) gqlint; # added 2023-08-19 + inherit (pkgs) graphite-cli; # added 2024-01-25 inherit (pkgs) graphqurl; # added 2023-08-19 gtop = pkgs.gtop; # added 2023-07-31 hs-client = pkgs.hsd; # added 2023-08-20 inherit (pkgs) hsd; # added 2023-08-19 inherit (pkgs) html-minifier; # added 2023-08-19 inherit (pkgs) htmlhint; # added 2023-08-19 + inherit (pkgs) http-server; # added 2024-01-20 hueadm = pkgs.hueadm; # added 2023-07-31 inherit (pkgs) hyperpotamus; # added 2023-08-19 immich = pkgs.immich-cli; # added 2023-08-19 @@ -109,6 +113,7 @@ mapAliases { ocaml-language-server = throw "ocaml-language-server was removed because it was abandoned upstream"; # added 2023-09-04 parcel-bundler = parcel; # added 2023-09-04 pkg = pkgs.vercel-pkg; # added 2023-10-04 + inherit (pkgs) pm2; # added 2024-01-22 prettier_d_slim = pkgs.prettier-d-slim; # added 2023-09-14 inherit (pkgs) pxder; # added 2023-09-26 inherit (pkgs) quicktype; # added 2023-09-09 diff --git a/pkgs/development/node-packages/main-programs.nix b/pkgs/development/node-packages/main-programs.nix index 8c243736594b3..77ce87da7aab8 100644 --- a/pkgs/development/node-packages/main-programs.nix +++ b/pkgs/development/node-packages/main-programs.nix @@ -5,7 +5,6 @@ "@electron-forge/cli" = "electron-forge"; "@microsoft/rush" = "rush"; "@webassemblyjs/cli-1.11.1" = "wasm2wast"; - "@withgraphite/graphite-cli" = "gt"; # Packages that provide a single executable. "@angular/cli" = "ng"; @@ -14,7 +13,6 @@ "@commitlint/cli" = "commitlint"; "@gitbeaker/cli" = "gitbeaker"; "@prisma/language-server" = "prisma-language-server"; - "@tailwindcss/language-server" = "tailwindcss-language-server"; "@uppy/companion" = "companion"; "@vue/cli" = "vue"; "@webassemblyjs/repl-1.11.1" = "wasm"; @@ -47,8 +45,12 @@ poor-mans-t-sql-formatter-cli = "sqlformat"; postcss-cli = "postcss"; prettier = "prettier"; + pulp = "pulp"; + purescript-language-server = "purescript-language-server"; purescript-psa = "psa"; purs-tidy = "purs-tidy"; + purty = "purty"; + pscid = "pscid"; remod-cli = "remod"; svelte-language-server = "svelteserver"; teck-programmer = "teck-firmware-upgrade"; diff --git a/pkgs/development/node-packages/node-packages.json b/pkgs/development/node-packages/node-packages.json index df6dc59e3c119..de10dd251f41b 100644 --- a/pkgs/development/node-packages/node-packages.json +++ b/pkgs/development/node-packages/node-packages.json @@ -9,7 +9,6 @@ , "@shopify/cli" , "@tailwindcss/aspect-ratio" , "@tailwindcss/forms" -, "@tailwindcss/language-server" , "@tailwindcss/line-clamp" , "@tailwindcss/typography" , "@uppy/companion" @@ -131,7 +130,6 @@ , "gulp" , "gulp-cli" , "he" -, "http-server" , "hs-airdrop" , "ijavascript" , "inliner" @@ -188,7 +186,6 @@ , "peerflix" , "peerflix-server" , {"pgrok-build-deps": "../../tools/networking/pgrok/build-deps"} -, "pm2" , "pnpm" , "poor-mans-t-sql-formatter-cli" , "postcss" @@ -302,7 +299,6 @@ , "webpack-dev-server" , "copy-webpack-plugin" , "webtorrent-cli" -, "@withgraphite/graphite-cli" , "wrangler" , "wring" , "@yaegassy/coc-nginx" diff --git a/pkgs/development/node-packages/node-packages.nix b/pkgs/development/node-packages/node-packages.nix index a7e1580f8d58e..43dfa94a5c1aa 100644 --- a/pkgs/development/node-packages/node-packages.nix +++ b/pkgs/development/node-packages/node-packages.nix @@ -4,15 +4,6 @@ let sources = { - "2-thenable-1.0.0" = { - name = "2-thenable"; - packageName = "2-thenable"; - version = "1.0.0"; - src = fetchurl { - url = "https://registry.npmjs.org/2-thenable/-/2-thenable-1.0.0.tgz"; - sha512 = "HqiDzaLDFCXkcCO/SwoyhRwqYtINFHF7t9BDRq4x90TOKNAJpiqUt9X5lQ08bwxYzc067HUywDjGySpebHcUpw=="; - }; - }; "@0no-co/graphql.web-1.0.4" = { name = "_at_0no-co_slash_graphql.web"; packageName = "@0no-co/graphql.web"; @@ -40,13 +31,13 @@ let sha512 = "DSzEEkbMYbAUVlhy7fg+BzccoRuSQzqHbIPGxGv19OJ2WKwS3/9ChAnQcII4g+GujcHhyJ8BUuOVAx/S5uAfQg=="; }; }; - "@adobe/css-tools-4.3.1" = { + "@adobe/css-tools-4.3.2" = { name = "_at_adobe_slash_css-tools"; packageName = "@adobe/css-tools"; - version = "4.3.1"; + version = "4.3.2"; src = fetchurl { - url = "https://registry.npmjs.org/@adobe/css-tools/-/css-tools-4.3.1.tgz"; - sha512 = "/62yikz7NLScCGAAST5SHdnjaDJQBDq0M2muyRTpf2VQhw6StBg2ALiu73zSJQ4fMVLA+0uBhBHAle7Wg+2kSg=="; + url = "https://registry.npmjs.org/@adobe/css-tools/-/css-tools-4.3.2.tgz"; + sha512 = "DA5a1C0gD/pLOvhv33YMrbf2FK3oUzwNl9oOJqE4XVjuEtt6XIakRcsd7eLiOSPkp1kTRQGICTA8cKra/vFbjw=="; }; }; "@akryum/winattr-3.0.0" = { @@ -85,31 +76,31 @@ let sha512 = "lFMjJTrFL3j7L9yBxwYfCq2k6qqwHyzuUl/XBnif78PWTJYyL/dfowQHWE3sp6U6ZzqWiiIZnpTMO96zhkjwtg=="; }; }; - "@angular-devkit/architect-0.1700.2" = { + "@angular-devkit/architect-0.1700.9" = { name = "_at_angular-devkit_slash_architect"; packageName = "@angular-devkit/architect"; - version = "0.1700.2"; + version = "0.1700.9"; src = fetchurl { - url = "https://registry.npmjs.org/@angular-devkit/architect/-/architect-0.1700.2.tgz"; - sha512 = "N/m0KRdc0Bk3JIVTDKgVJ1f7rELE6ejaYaTanybZFD76lJfAeuTTzZ1HJfeeXso+O/9CGRD42bRowYv3hgM+eA=="; + url = "https://registry.npmjs.org/@angular-devkit/architect/-/architect-0.1700.9.tgz"; + sha512 = "B8OeUrvJj5JsfOJIibpoVjvuZzthPFxf1LvuUXTyQcqDUscJAe/RJBc2woT6ss13Iv/HWt8mgaMPP4CccckdNg=="; }; }; - "@angular-devkit/core-17.0.2" = { + "@angular-devkit/core-17.0.9" = { name = "_at_angular-devkit_slash_core"; packageName = "@angular-devkit/core"; - version = "17.0.2"; + version = "17.0.9"; src = fetchurl { - url = "https://registry.npmjs.org/@angular-devkit/core/-/core-17.0.2.tgz"; - sha512 = "wmQyiXIqmdm9KSiB7d5SnDaqqRZSsZ7Oy2kEI4gUyLr2y9icj/4zpTpYvsqKyhF1NMU8ElZ5b4s1ru2pirlDVg=="; + url = "https://registry.npmjs.org/@angular-devkit/core/-/core-17.0.9.tgz"; + sha512 = "r5jqwpWOgowqe9KSDqJ3iSbmsEt2XPjSvRG4DSI2T9s31bReoMtreo8b7wkRa2B3hbcDnstFbn8q27VvJDqRaQ=="; }; }; - "@angular-devkit/schematics-17.0.2" = { + "@angular-devkit/schematics-17.0.9" = { name = "_at_angular-devkit_slash_schematics"; packageName = "@angular-devkit/schematics"; - version = "17.0.2"; + version = "17.0.9"; src = fetchurl { - url = "https://registry.npmjs.org/@angular-devkit/schematics/-/schematics-17.0.2.tgz"; - sha512 = "NOGC/TN6M+Vt2vSR3D1t3v8RNn2lm02nkm8UniACkwqnCjod5Npt1CfdweOSLEDaO5TR6xemG2+0gl0yGRXJ7w=="; + url = "https://registry.npmjs.org/@angular-devkit/schematics/-/schematics-17.0.9.tgz"; + sha512 = "5ti7g45F2KjDJS0DbgnOGI1GyKxGpn4XsKTYJFJrSAWj6VpuvPy/DINRrXNuRVo09VPEkqA+IW7QwaG9icptQg=="; }; }; "@apidevtools/json-schema-ref-parser-9.0.6" = { @@ -283,6 +274,15 @@ let sha512 = "xhlTqH0m31mnsG0tIP4ETgfSB6gXDaYYsUWTrlUV93fFQPI9dd8hE0Ot6MHLCtqgB32hwJAC3YZMWlXZw7AleA=="; }; }; + "@asamuzakjp/dom-selector-2.0.1" = { + name = "_at_asamuzakjp_slash_dom-selector"; + packageName = "@asamuzakjp/dom-selector"; + version = "2.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/@asamuzakjp/dom-selector/-/dom-selector-2.0.1.tgz"; + sha512 = "QJAJffmCiymkv6YyQ7voyQb5caCth6jzZsQncYCpHXrJ7RqdYG5y43+is8mnFcYubdOkr7cn1+na9BdFMxqw7w=="; + }; + }; "@astrojs/compiler-1.8.2" = { name = "_at_astrojs_slash_compiler"; packageName = "@astrojs/compiler"; @@ -292,13 +292,13 @@ let sha512 = "o/ObKgtMzl8SlpIdzaxFnt7SATKPxu4oIP/1NL+HDJRzxfJcAkOTAb/ZKMRyULbz4q+1t2/DAebs2Z1QairkZw=="; }; }; - "@astrojs/compiler-2.3.2" = { + "@astrojs/compiler-2.4.0" = { name = "_at_astrojs_slash_compiler"; packageName = "@astrojs/compiler"; - version = "2.3.2"; + version = "2.4.0"; src = fetchurl { - url = "https://registry.npmjs.org/@astrojs/compiler/-/compiler-2.3.2.tgz"; - sha512 = "jkY7bCVxl27KeZsSxIZ+pqACe+g8VQUdTiSJRj/sXYdIaZlW3ZMq4qF2M17P/oDt3LBq0zLNwQr4Cb7fSpRGxQ=="; + url = "https://registry.npmjs.org/@astrojs/compiler/-/compiler-2.4.0.tgz"; + sha512 = "LUN/iG8KcStfChHwTvCg/t91IQFQxguF3CkDLW3tdY2vBKZmOJy9MgtRl20ZGgPtgrykGCtnr4AellEm0bPuFg=="; }; }; "@asyncapi/specs-4.3.1" = { @@ -409,15 +409,6 @@ let sha512 = "9Sp4vXjoG99qI6sFe09MfgIzsKwiOR0atqxmAcJJLn6fUNXhJEoW04n3w/YcRlk7P4gC9cOMsEyvb8xu+fDEOQ=="; }; }; - "@aws-sdk/client-cloudformation-3.454.0" = { - name = "_at_aws-sdk_slash_client-cloudformation"; - packageName = "@aws-sdk/client-cloudformation"; - version = "3.454.0"; - src = fetchurl { - url = "https://registry.npmjs.org/@aws-sdk/client-cloudformation/-/client-cloudformation-3.454.0.tgz"; - sha512 = "CKOE5u2gLt/BjHYX6a0uKGsWPBic9uOzlTwqnpqXEmVSb25xv5ULHOUmYfmSyw2TWXwxEe4a6ZwBL0MYJGrEUw=="; - }; - }; "@aws-sdk/client-s3-3.296.0" = { name = "_at_aws-sdk_slash_client-s3"; packageName = "@aws-sdk/client-s3"; @@ -427,13 +418,13 @@ let sha512 = "PI6mjM0fmcV2fqkkRoivF3DYex4lnbEz7WIsOFAwpHJBbA9ykClQpiutCKcgl0x/yEWAeTNdQtrCVeAwbxYfvw=="; }; }; - "@aws-sdk/client-s3-3.454.0" = { + "@aws-sdk/client-s3-3.485.0" = { name = "_at_aws-sdk_slash_client-s3"; packageName = "@aws-sdk/client-s3"; - version = "3.454.0"; + version = "3.485.0"; src = fetchurl { - url = "https://registry.npmjs.org/@aws-sdk/client-s3/-/client-s3-3.454.0.tgz"; - sha512 = "vBx4iB1c4mEz+twMnl6angC1/IpnmXaT8L6Kl9uNiurFsb6N4tCyrJ24kECdsOSTM7ePXvE1fKst8zAh6MW5ZA=="; + url = "https://registry.npmjs.org/@aws-sdk/client-s3/-/client-s3-3.485.0.tgz"; + sha512 = "Vh8FRiXekwu1sSdfhS/wpNzjIljPmIXrUdEapR7EmaIwditR+mTTzNS+7y69YdPQhVEE2u9QxRlo4Eg1e1jD3w=="; }; }; "@aws-sdk/client-sso-3.296.0" = { @@ -445,13 +436,13 @@ let sha512 = "0P0x++jhlmhzViFPOHvTb7+Z6tSV9aONwB8CchIseg2enSPBbGfml7y5gQu1jdOTDS6pBUmrPZ+9sOI4/GvAfA=="; }; }; - "@aws-sdk/client-sso-3.451.0" = { + "@aws-sdk/client-sso-3.485.0" = { name = "_at_aws-sdk_slash_client-sso"; packageName = "@aws-sdk/client-sso"; - version = "3.451.0"; + version = "3.485.0"; src = fetchurl { - url = "https://registry.npmjs.org/@aws-sdk/client-sso/-/client-sso-3.451.0.tgz"; - sha512 = "KkYSke3Pdv3MfVH/5fT528+MKjMyPKlcLcd4zQb0x6/7Bl7EHrPh1JZYjzPLHelb+UY5X0qN8+cb8iSu1eiwIQ=="; + url = "https://registry.npmjs.org/@aws-sdk/client-sso/-/client-sso-3.485.0.tgz"; + sha512 = "apN2bEn0PZs0jD4jAfvwO3dlWqw9YIQJ6TAudM1bd3S5vzWqlBBcLfQpK6taHoQaI+WqgUWXLuOf7gRFbGXKPg=="; }; }; "@aws-sdk/client-sso-oidc-3.296.0" = { @@ -472,13 +463,13 @@ let sha512 = "ew7hSVNpitnLCIRVhnI2L1HZB/yYpRQFReR62fOqCUnpKqm6WGga37bnvgYbY5y0Rv23C0VHARovwunVg1gabA=="; }; }; - "@aws-sdk/client-sts-3.454.0" = { + "@aws-sdk/client-sts-3.485.0" = { name = "_at_aws-sdk_slash_client-sts"; packageName = "@aws-sdk/client-sts"; - version = "3.454.0"; + version = "3.485.0"; src = fetchurl { - url = "https://registry.npmjs.org/@aws-sdk/client-sts/-/client-sts-3.454.0.tgz"; - sha512 = "0fDvr8WeB6IYO8BUCzcivWmahgGl/zDbaYfakzGnt4mrl5ztYaXE875WI6b7+oFcKMRvN+KLvwu5TtyFuNY+GQ=="; + url = "https://registry.npmjs.org/@aws-sdk/client-sts/-/client-sts-3.485.0.tgz"; + sha512 = "PI4q36kVF0fpIPZyeQhrwwJZ6SRkOGvU3rX5Qn4b5UY5X+Ct1aLhqSX8/OB372UZIcnh6eSvERu8POHleDO7Jw=="; }; }; "@aws-sdk/config-resolver-3.296.0" = { @@ -490,13 +481,13 @@ let sha512 = "Ecdp7fmIitHo49NRCyIEHb9xlI43J7qkvhcwaKGGqN5jvoh0YhR2vNr195wWG8Ip/9PwsD4QV4g/XT5EY7XkMA=="; }; }; - "@aws-sdk/core-3.451.0" = { + "@aws-sdk/core-3.485.0" = { name = "_at_aws-sdk_slash_core"; packageName = "@aws-sdk/core"; - version = "3.451.0"; + version = "3.485.0"; src = fetchurl { - url = "https://registry.npmjs.org/@aws-sdk/core/-/core-3.451.0.tgz"; - sha512 = "SamWW2zHEf1ZKe3j1w0Piauryl8BQIlej0TBS18A4ACzhjhWXhCs13bO1S88LvPR5mBFXok3XOT6zPOnKDFktw=="; + url = "https://registry.npmjs.org/@aws-sdk/core/-/core-3.485.0.tgz"; + sha512 = "Yvi80DQcbjkYCft471ClE3HuetuNVqntCs6eFOomDcrJaqdOFrXv2kJAxky84MRA/xb7bGlDGAPbTuj1ICputg=="; }; }; "@aws-sdk/credential-provider-env-3.296.0" = { @@ -508,13 +499,13 @@ let sha512 = "eDWSU3p04gytkkVXnYn05YzrP5SEaj/DQiafd4y+iBl8IFfF3zM6982rs6qFhvpwrHeSbLqHNfKR1HDWVwfG5g=="; }; }; - "@aws-sdk/credential-provider-env-3.451.0" = { + "@aws-sdk/credential-provider-env-3.485.0" = { name = "_at_aws-sdk_slash_credential-provider-env"; packageName = "@aws-sdk/credential-provider-env"; - version = "3.451.0"; + version = "3.485.0"; src = fetchurl { - url = "https://registry.npmjs.org/@aws-sdk/credential-provider-env/-/credential-provider-env-3.451.0.tgz"; - sha512 = "9dAav7DcRgaF7xCJEQR5ER9ErXxnu/tdnVJ+UPmb1NPeIZdESv1A3lxFDEq1Fs8c4/lzAj9BpshGyJVIZwZDKg=="; + url = "https://registry.npmjs.org/@aws-sdk/credential-provider-env/-/credential-provider-env-3.485.0.tgz"; + sha512 = "3XkFgwVU1XOB33dV7t9BKJ/ptdl2iS+0dxE7ecq8aqT2/gsfKmLCae1G17P8WmdD3z0kMDTvnqM2aWgUnSOkmg=="; }; }; "@aws-sdk/credential-provider-imds-3.296.0" = { @@ -535,13 +526,13 @@ let sha512 = "U0ecY0GX2jeDAgmTzaVO9YgjlLUfb8wgZSu1OwbOxCJscL/5eFkhcF0/xJQXDbRgcj4H4dlquqeSWsBVl/PgvQ=="; }; }; - "@aws-sdk/credential-provider-ini-3.451.0" = { + "@aws-sdk/credential-provider-ini-3.485.0" = { name = "_at_aws-sdk_slash_credential-provider-ini"; packageName = "@aws-sdk/credential-provider-ini"; - version = "3.451.0"; + version = "3.485.0"; src = fetchurl { - url = "https://registry.npmjs.org/@aws-sdk/credential-provider-ini/-/credential-provider-ini-3.451.0.tgz"; - sha512 = "TySt64Ci5/ZbqFw1F9Z0FIGvYx5JSC9e6gqDnizIYd8eMnn8wFRUscRrD7pIHKfrhvVKN5h0GdYovmMO/FMCBw=="; + url = "https://registry.npmjs.org/@aws-sdk/credential-provider-ini/-/credential-provider-ini-3.485.0.tgz"; + sha512 = "cFYF/Bdw7EnT4viSxYpNIv3IBkri/Yb+JpQXl8uDq7bfVJfAN5qZmK07vRkg08xL6TC4F41wshhMSAucGdTwIw=="; }; }; "@aws-sdk/credential-provider-node-3.296.0" = { @@ -553,13 +544,13 @@ let sha512 = "oCkmh2b1DQhHkhd/qA9jiSIOkrBBK7cMg1/PVIgLw8e15NkzUHBObLJ/ZQw6ZzCxZzjlMYaFv9oCB8hyO8txmA=="; }; }; - "@aws-sdk/credential-provider-node-3.451.0" = { + "@aws-sdk/credential-provider-node-3.485.0" = { name = "_at_aws-sdk_slash_credential-provider-node"; packageName = "@aws-sdk/credential-provider-node"; - version = "3.451.0"; + version = "3.485.0"; src = fetchurl { - url = "https://registry.npmjs.org/@aws-sdk/credential-provider-node/-/credential-provider-node-3.451.0.tgz"; - sha512 = "AEwM1WPyxUdKrKyUsKyFqqRFGU70e4qlDyrtBxJnSU9NRLZI8tfEZ67bN7fHSxBUBODgDXpMSlSvJiBLh5/3pw=="; + url = "https://registry.npmjs.org/@aws-sdk/credential-provider-node/-/credential-provider-node-3.485.0.tgz"; + sha512 = "2DwzO2azkSzngifKDT61W/DL0tSzewuaFHiLJWdfc8Et3mdAQJ9x3KAj8u7XFpjIcGNqk7FiKjN+zeGUuNiEhA=="; }; }; "@aws-sdk/credential-provider-process-3.296.0" = { @@ -571,13 +562,13 @@ let sha512 = "AY7sTX2dGi8ripuCpcJLYHOZB2wJ6NnseyK/kK5TfJn/pgboKwuGtz0hkJCVprNWomKa6IpHksm7vLQ4O2E+UA=="; }; }; - "@aws-sdk/credential-provider-process-3.451.0" = { + "@aws-sdk/credential-provider-process-3.485.0" = { name = "_at_aws-sdk_slash_credential-provider-process"; packageName = "@aws-sdk/credential-provider-process"; - version = "3.451.0"; + version = "3.485.0"; src = fetchurl { - url = "https://registry.npmjs.org/@aws-sdk/credential-provider-process/-/credential-provider-process-3.451.0.tgz"; - sha512 = "HQywSdKeD5PErcLLnZfSyCJO+6T+ZyzF+Lm/QgscSC+CbSUSIPi//s15qhBRVely/3KBV6AywxwNH+5eYgt4lQ=="; + url = "https://registry.npmjs.org/@aws-sdk/credential-provider-process/-/credential-provider-process-3.485.0.tgz"; + sha512 = "X9qS6ZO/rDKYDgWqD1YmSX7sAUUHax9HbXlgGiTTdtfhZvQh1ZmnH6wiPu5WNliafHZFtZT2W07kgrDLPld/Ug=="; }; }; "@aws-sdk/credential-provider-sso-3.296.0" = { @@ -589,13 +580,13 @@ let sha512 = "zPFHDX/niXfcQrKQhmBv1XPYEe4b7im4vRKrzjYXgDRpG2M3LP0KaWIwN6Ap+GRYBNBthen86vhTlmKGzyU5YA=="; }; }; - "@aws-sdk/credential-provider-sso-3.451.0" = { + "@aws-sdk/credential-provider-sso-3.485.0" = { name = "_at_aws-sdk_slash_credential-provider-sso"; packageName = "@aws-sdk/credential-provider-sso"; - version = "3.451.0"; + version = "3.485.0"; src = fetchurl { - url = "https://registry.npmjs.org/@aws-sdk/credential-provider-sso/-/credential-provider-sso-3.451.0.tgz"; - sha512 = "Usm/N51+unOt8ID4HnQzxIjUJDrkAQ1vyTOC0gSEEJ7h64NSSPGD5yhN7il5WcErtRd3EEtT1a8/GTC5TdBctg=="; + url = "https://registry.npmjs.org/@aws-sdk/credential-provider-sso/-/credential-provider-sso-3.485.0.tgz"; + sha512 = "l0oC8GTrWh+LFQQfSmG1Jai1PX7Mhj9arb/CaS1/tmeZE0hgIXW++tvljYs/Dds4LGXUlaWG+P7BrObf6OyIXA=="; }; }; "@aws-sdk/credential-provider-web-identity-3.296.0" = { @@ -607,13 +598,13 @@ let sha512 = "Rl6Ohoekxe+pccA55XXQDW5wApbg3rGWr6FkmPRcg7Ld6Vfe+HL8OtfsFf83/0eoFerevbif+00BdknXWT05LA=="; }; }; - "@aws-sdk/credential-provider-web-identity-3.451.0" = { + "@aws-sdk/credential-provider-web-identity-3.485.0" = { name = "_at_aws-sdk_slash_credential-provider-web-identity"; packageName = "@aws-sdk/credential-provider-web-identity"; - version = "3.451.0"; + version = "3.485.0"; src = fetchurl { - url = "https://registry.npmjs.org/@aws-sdk/credential-provider-web-identity/-/credential-provider-web-identity-3.451.0.tgz"; - sha512 = "Xtg3Qw65EfDjWNG7o2xD6sEmumPfsy3WDGjk2phEzVg8s7hcZGxf5wYwe6UY7RJvlEKrU0rFA+AMn6Hfj5oOzg=="; + url = "https://registry.npmjs.org/@aws-sdk/credential-provider-web-identity/-/credential-provider-web-identity-3.485.0.tgz"; + sha512 = "WpBFZFE0iXtnibH5POMEKITj/hR0YV5l2n9p8BEvKjdJ63s3Xke1RN20ZdIyKDaRDwj8adnKDgNPEnAKdS4kLw=="; }; }; "@aws-sdk/eventstream-codec-3.296.0" = { @@ -715,13 +706,13 @@ let sha512 = "SCIt10cr5dud7hvwveU4wkLjvkGssJ3GrcbHCds2NwI+JHmpcaaNYLAqi305JAuT29T36U5ssTFDSmrrEOcfag=="; }; }; - "@aws-sdk/lib-storage-3.454.0" = { + "@aws-sdk/lib-storage-3.485.0" = { name = "_at_aws-sdk_slash_lib-storage"; packageName = "@aws-sdk/lib-storage"; - version = "3.454.0"; + version = "3.485.0"; src = fetchurl { - url = "https://registry.npmjs.org/@aws-sdk/lib-storage/-/lib-storage-3.454.0.tgz"; - sha512 = "UygsmdtIwty9GJqBoCqTQeX/dwE2Oo/m3P5UzuUr2veC6AEuYQyMIvmSgLVEO/ek3hfK86kmRBff7VTGWUuN8Q=="; + url = "https://registry.npmjs.org/@aws-sdk/lib-storage/-/lib-storage-3.485.0.tgz"; + sha512 = "d/DppujsMu2zg2K95wS2OZ+x+wY41OeZL0duROKZRzNtPyYzlOiSw00+zSz7/sdmUad1bYIEyDJ46zI/FV6AVg=="; }; }; "@aws-sdk/md5-js-3.296.0" = { @@ -742,13 +733,13 @@ let sha512 = "Xhzucs5psscjXJW7V6vMrjJWGmej8Xtw8XIKd91RLmbxdmecMy85/mQC3bIqxgTGhC/e3pKqWSp8z/YjV6iPZg=="; }; }; - "@aws-sdk/middleware-bucket-endpoint-3.451.0" = { + "@aws-sdk/middleware-bucket-endpoint-3.485.0" = { name = "_at_aws-sdk_slash_middleware-bucket-endpoint"; packageName = "@aws-sdk/middleware-bucket-endpoint"; - version = "3.451.0"; + version = "3.485.0"; src = fetchurl { - url = "https://registry.npmjs.org/@aws-sdk/middleware-bucket-endpoint/-/middleware-bucket-endpoint-3.451.0.tgz"; - sha512 = "KWyZ1JGnYz2QbHuJtYTP1BVnMOfVopR8rP8dTinVb/JR5HfAYz4imICJlJUbOYRjN7wpA3PrRI8dNRjrSBjWJg=="; + url = "https://registry.npmjs.org/@aws-sdk/middleware-bucket-endpoint/-/middleware-bucket-endpoint-3.485.0.tgz"; + sha512 = "DptPuprsx9V1LH91ZvC/7a7B1UnuSAIi1ArJHlHqJL1ISo6sH1oeXP6KRa0tj8biGMDIx0b22wg8EEpFePMy3w=="; }; }; "@aws-sdk/middleware-content-length-3.296.0" = { @@ -778,13 +769,13 @@ let sha512 = "aVCv9CdAVWt9AlZKQZRweIywkAszRrZUCo8K5bBUJNdD4061DoDqLK/6jmqXmObas0j1wQr/eNzjYbv99MZBCg=="; }; }; - "@aws-sdk/middleware-expect-continue-3.451.0" = { + "@aws-sdk/middleware-expect-continue-3.485.0" = { name = "_at_aws-sdk_slash_middleware-expect-continue"; packageName = "@aws-sdk/middleware-expect-continue"; - version = "3.451.0"; + version = "3.485.0"; src = fetchurl { - url = "https://registry.npmjs.org/@aws-sdk/middleware-expect-continue/-/middleware-expect-continue-3.451.0.tgz"; - sha512 = "vwG8o2Uk6biLDlOZnqXemsO4dS2HvrprUdxyouwu6hlzLFskg8nL122butn19JqXJKgcVLuSSLzT+xwqBWy2Rg=="; + url = "https://registry.npmjs.org/@aws-sdk/middleware-expect-continue/-/middleware-expect-continue-3.485.0.tgz"; + sha512 = "rOwJJWM1/ydwSiJJ1l/X5h91u2Xzb8/CwOW6ZY+E8iZA0HDCtlJnKNlhHb+NHGtDamd4+1qdGSRtPQevyS58Cg=="; }; }; "@aws-sdk/middleware-flexible-checksums-3.296.0" = { @@ -796,13 +787,13 @@ let sha512 = "F5wVMhLIgA86PKsK/Az7LGIiNVDdZjoSn0+boe6fYW/AIAmgJhPf//500Md0GsKsLOCcPcxiQC43a0hVT2zbew=="; }; }; - "@aws-sdk/middleware-flexible-checksums-3.451.0" = { + "@aws-sdk/middleware-flexible-checksums-3.485.0" = { name = "_at_aws-sdk_slash_middleware-flexible-checksums"; packageName = "@aws-sdk/middleware-flexible-checksums"; - version = "3.451.0"; + version = "3.485.0"; src = fetchurl { - url = "https://registry.npmjs.org/@aws-sdk/middleware-flexible-checksums/-/middleware-flexible-checksums-3.451.0.tgz"; - sha512 = "eOkpcC2zgAvqs1w7Yp5nsk9LBIj6qLU5kaZuZEBOiFbNKIrTnPo6dQuhgvDcKHD6Y5W/cUjSBiFMs/ROb5aoug=="; + url = "https://registry.npmjs.org/@aws-sdk/middleware-flexible-checksums/-/middleware-flexible-checksums-3.485.0.tgz"; + sha512 = "5+OmVMbEwl1LDdWbaJxoSViw6vuMsdDQgASFUM37aG46q1zWSiPU171IXutEAFZZXN/t0HcOFi0AmNrS0o+dkQ=="; }; }; "@aws-sdk/middleware-host-header-3.296.0" = { @@ -814,13 +805,13 @@ let sha512 = "V47dFtfkX5lXWv9GDp71gZVCRws4fEdQ9QF9BQ/2UMSNrYjQLg6mFe7NibH+IJoNOid2FIwWIl94Eos636VGYQ=="; }; }; - "@aws-sdk/middleware-host-header-3.451.0" = { + "@aws-sdk/middleware-host-header-3.485.0" = { name = "_at_aws-sdk_slash_middleware-host-header"; packageName = "@aws-sdk/middleware-host-header"; - version = "3.451.0"; + version = "3.485.0"; src = fetchurl { - url = "https://registry.npmjs.org/@aws-sdk/middleware-host-header/-/middleware-host-header-3.451.0.tgz"; - sha512 = "j8a5jAfhWmsK99i2k8oR8zzQgXrsJtgrLxc3js6U+525mcZytoiDndkWTmD5fjJ1byU1U2E5TaPq+QJeDip05Q=="; + url = "https://registry.npmjs.org/@aws-sdk/middleware-host-header/-/middleware-host-header-3.485.0.tgz"; + sha512 = "1mAUX9dQNGo2RIKseVj7SI/D5abQJQ/Os8hQ0NyVAyyVYF+Yjx5PphKgfhM5yoBwuwZUl6q71XPYEGNx7be6SA=="; }; }; "@aws-sdk/middleware-location-constraint-3.296.0" = { @@ -832,13 +823,13 @@ let sha512 = "KHkWaIrZOtJmV1/WO9KOf7kSK41ngfqts3YIun956NYglKTDKyrBIOPCgmXTT/03odnYsKVT/UfbEIh/v4RxGA=="; }; }; - "@aws-sdk/middleware-location-constraint-3.451.0" = { + "@aws-sdk/middleware-location-constraint-3.485.0" = { name = "_at_aws-sdk_slash_middleware-location-constraint"; packageName = "@aws-sdk/middleware-location-constraint"; - version = "3.451.0"; + version = "3.485.0"; src = fetchurl { - url = "https://registry.npmjs.org/@aws-sdk/middleware-location-constraint/-/middleware-location-constraint-3.451.0.tgz"; - sha512 = "R4U2G7mybP0BMiQBJWTcB47g49F4PSXTiCsvMDp5WOEhpWvGQuO1ZIhTxCl5s5lgTSne063Os8W6KSdK2yG2TQ=="; + url = "https://registry.npmjs.org/@aws-sdk/middleware-location-constraint/-/middleware-location-constraint-3.485.0.tgz"; + sha512 = "Mrp4chtYliqCUSVjzLYPcZCPGmhL4QM7o6NhHBdA6omaIGdn4pJqFwN5ELZoWJDZMKyfrKi6s6u97jR9VtEXRg=="; }; }; "@aws-sdk/middleware-logger-3.296.0" = { @@ -850,13 +841,13 @@ let sha512 = "LzfEEFyBR9LXdWwLdtBrmi1vLdzgdJNntEgzqktVF8LwaCyY+9xIE6TGu/2V+9fJHAwECxjOC1eQbNQdAZ0Tmw=="; }; }; - "@aws-sdk/middleware-logger-3.451.0" = { + "@aws-sdk/middleware-logger-3.485.0" = { name = "_at_aws-sdk_slash_middleware-logger"; packageName = "@aws-sdk/middleware-logger"; - version = "3.451.0"; + version = "3.485.0"; src = fetchurl { - url = "https://registry.npmjs.org/@aws-sdk/middleware-logger/-/middleware-logger-3.451.0.tgz"; - sha512 = "0kHrYEyVeB2QBfP6TfbI240aRtatLZtcErJbhpiNUb+CQPgEL3crIjgVE8yYiJumZ7f0jyjo8HLPkwD1/2APaw=="; + url = "https://registry.npmjs.org/@aws-sdk/middleware-logger/-/middleware-logger-3.485.0.tgz"; + sha512 = "O8IgJ0LHi5wTs5GlpI7nqmmSSagkVdd1shpGgQWY2h0kMSCII8CJZHBG97dlFFpGTvx5EDlhPNek7rl/6F4dRw=="; }; }; "@aws-sdk/middleware-recursion-detection-3.296.0" = { @@ -868,13 +859,13 @@ let sha512 = "UG7TLDPz9ImQG0uVklHTxE9Us7rTImwN+6el6qZCpoTBuGeXgOkfb0/p8izJyFgY/hMUR4cZqs7IdCDUkxQF3w=="; }; }; - "@aws-sdk/middleware-recursion-detection-3.451.0" = { + "@aws-sdk/middleware-recursion-detection-3.485.0" = { name = "_at_aws-sdk_slash_middleware-recursion-detection"; packageName = "@aws-sdk/middleware-recursion-detection"; - version = "3.451.0"; + version = "3.485.0"; src = fetchurl { - url = "https://registry.npmjs.org/@aws-sdk/middleware-recursion-detection/-/middleware-recursion-detection-3.451.0.tgz"; - sha512 = "J6jL6gJ7orjHGM70KDRcCP7so/J2SnkN4vZ9YRLTeeZY6zvBuHDjX8GCIgSqPn/nXFXckZO8XSnA7u6+3TAT0w=="; + url = "https://registry.npmjs.org/@aws-sdk/middleware-recursion-detection/-/middleware-recursion-detection-3.485.0.tgz"; + sha512 = "ZeVNATGNFcqkWDut3luVszROTUzkU5u+rJpB/xmeMoenlDAjPRiHt/ca3WkI5wAnIJ1VSNGpD2sOFLMCH+EWag=="; }; }; "@aws-sdk/middleware-retry-3.296.0" = { @@ -895,13 +886,13 @@ let sha512 = "zH4uZKEqumo01wn+dTwrYnvOui9GjDiuBHdECnSjnA0Mkxo/tfMPYzYD7mE8kUlBz7HfQcXeXlyaApj9fPkxvg=="; }; }; - "@aws-sdk/middleware-sdk-s3-3.451.0" = { + "@aws-sdk/middleware-sdk-s3-3.485.0" = { name = "_at_aws-sdk_slash_middleware-sdk-s3"; packageName = "@aws-sdk/middleware-sdk-s3"; - version = "3.451.0"; + version = "3.485.0"; src = fetchurl { - url = "https://registry.npmjs.org/@aws-sdk/middleware-sdk-s3/-/middleware-sdk-s3-3.451.0.tgz"; - sha512 = "XF4Cw8HrYUwGLKOqKtWs6ss1WXoxvQUcgGLACGSqn9a0p51446NiS5671x7qJUsfBuygdKlIKcOc8pPr9a+5Ow=="; + url = "https://registry.npmjs.org/@aws-sdk/middleware-sdk-s3/-/middleware-sdk-s3-3.485.0.tgz"; + sha512 = "3769c4e3UtvaNU5T6dHxhjGI1kEXymldqiP1PMZMX2jVffwSGhbvyLq0Kl6+9Jr51fj2oXN6Tex+8J9+5dzTgQ=="; }; }; "@aws-sdk/middleware-sdk-sts-3.296.0" = { @@ -913,15 +904,6 @@ let sha512 = "0EnHtiRzcRcXaF6zEgcRGUtVgX0RqczwlGXjtryHcxiqU/+adqbRuckC7bdMF4Zva6GVPS25XppvGF4M+UzAEw=="; }; }; - "@aws-sdk/middleware-sdk-sts-3.451.0" = { - name = "_at_aws-sdk_slash_middleware-sdk-sts"; - packageName = "@aws-sdk/middleware-sdk-sts"; - version = "3.451.0"; - src = fetchurl { - url = "https://registry.npmjs.org/@aws-sdk/middleware-sdk-sts/-/middleware-sdk-sts-3.451.0.tgz"; - sha512 = "UJ6UfVUEgp0KIztxpAeelPXI5MLj9wUtUCqYeIMP7C1ZhoEMNm3G39VLkGN43dNhBf1LqjsV9jkKMZbVfYXuwg=="; - }; - }; "@aws-sdk/middleware-serde-3.296.0" = { name = "_at_aws-sdk_slash_middleware-serde"; packageName = "@aws-sdk/middleware-serde"; @@ -940,13 +922,13 @@ let sha512 = "wyiG+WPDvugGTIPpKchGOdvvpcMZEN2IfP6iK//QAqGXsC6rDm5+SNZ3+elvduZjPUdVA06W0CcFYBAkVz8D7Q=="; }; }; - "@aws-sdk/middleware-signing-3.451.0" = { + "@aws-sdk/middleware-signing-3.485.0" = { name = "_at_aws-sdk_slash_middleware-signing"; packageName = "@aws-sdk/middleware-signing"; - version = "3.451.0"; + version = "3.485.0"; src = fetchurl { - url = "https://registry.npmjs.org/@aws-sdk/middleware-signing/-/middleware-signing-3.451.0.tgz"; - sha512 = "s5ZlcIoLNg1Huj4Qp06iKniE8nJt/Pj1B/fjhWc6cCPCM7XJYUCejCnRh6C5ZJoBEYodjuwZBejPc1Wh3j+znA=="; + url = "https://registry.npmjs.org/@aws-sdk/middleware-signing/-/middleware-signing-3.485.0.tgz"; + sha512 = "41xzT2p1sOibhsLkdE5rwPJkNbBtKD8Gp36/ySfu0KE415wfXKacElSVxAaBw39/j7iSWDYqqybeEYbAzk+3GQ=="; }; }; "@aws-sdk/middleware-ssec-3.296.0" = { @@ -958,13 +940,13 @@ let sha512 = "vcSyXxEXAC9rWzUd7rq2/JxPdt87DKiA+wfiBrpGvFV+bacocIV0TFcpJncgZqMOoP8b6Osd+mW4BjlkwBamtA=="; }; }; - "@aws-sdk/middleware-ssec-3.451.0" = { + "@aws-sdk/middleware-ssec-3.485.0" = { name = "_at_aws-sdk_slash_middleware-ssec"; packageName = "@aws-sdk/middleware-ssec"; - version = "3.451.0"; + version = "3.485.0"; src = fetchurl { - url = "https://registry.npmjs.org/@aws-sdk/middleware-ssec/-/middleware-ssec-3.451.0.tgz"; - sha512 = "hDkeBUiRsvuDbvsPha0/uJHE680WDzjAOoE6ZnLBoWsw7ry+Bw1ULMj0sCmpBVrQ7Gpivi/6zbezhClVmt3ITw=="; + url = "https://registry.npmjs.org/@aws-sdk/middleware-ssec/-/middleware-ssec-3.485.0.tgz"; + sha512 = "A59WTC0egT8zLnRzB+yWKq2AonugD1DgN4710RG70JY5XUmx5TYdECbUrVeG/zhNIKbBLLFjRcVk2uo4OZcgIA=="; }; }; "@aws-sdk/middleware-stack-3.296.0" = { @@ -985,13 +967,13 @@ let sha512 = "L7jacxSt6gxX1gD3tQtfwHqBDk5rT2wWD3rxBa6rs7f81b9ObgY/sPT2IgRT7JNCVzvKLYFxJaTklDj65mY1SQ=="; }; }; - "@aws-sdk/middleware-user-agent-3.451.0" = { + "@aws-sdk/middleware-user-agent-3.485.0" = { name = "_at_aws-sdk_slash_middleware-user-agent"; packageName = "@aws-sdk/middleware-user-agent"; - version = "3.451.0"; + version = "3.485.0"; src = fetchurl { - url = "https://registry.npmjs.org/@aws-sdk/middleware-user-agent/-/middleware-user-agent-3.451.0.tgz"; - sha512 = "8NM/0JiKLNvT9wtAQVl1DFW0cEO7OvZyLSUBLNLTHqyvOZxKaZ8YFk7d8PL6l76LeUKRxq4NMxfZQlUIRe0eSA=="; + url = "https://registry.npmjs.org/@aws-sdk/middleware-user-agent/-/middleware-user-agent-3.485.0.tgz"; + sha512 = "CddCVOn+OPQ0CcchketIg+WF6v+MDLAf3GOYTR2htUxxIm7HABuRd6R3kvQ5Jny9CV8gMt22G1UZITsFexSJlQ=="; }; }; "@aws-sdk/node-config-provider-3.296.0" = { @@ -1048,22 +1030,22 @@ let sha512 = "nLNZKVQfK42euv7101cE5qfg17YCtGcfccx3B5XSAzvyTROR46kwYqbEvYSsWisbZoRhbQc905gB/5E0U5HDIw=="; }; }; - "@aws-sdk/region-config-resolver-3.451.0" = { + "@aws-sdk/region-config-resolver-3.485.0" = { name = "_at_aws-sdk_slash_region-config-resolver"; packageName = "@aws-sdk/region-config-resolver"; - version = "3.451.0"; + version = "3.485.0"; src = fetchurl { - url = "https://registry.npmjs.org/@aws-sdk/region-config-resolver/-/region-config-resolver-3.451.0.tgz"; - sha512 = "3iMf4OwzrFb4tAAmoROXaiORUk2FvSejnHIw/XHvf/jjR4EqGGF95NZP/n/MeFZMizJWVssrwS412GmoEyoqhg=="; + url = "https://registry.npmjs.org/@aws-sdk/region-config-resolver/-/region-config-resolver-3.485.0.tgz"; + sha512 = "2FB2EQ0sIE+YgFqGtkE1lDIMIL6nYe6MkOHBwBM7bommadKIrbbr2L22bPZGs3ReTsxiJabjzxbuCAVhrpHmhg=="; }; }; - "@aws-sdk/s3-presigned-post-3.454.0" = { + "@aws-sdk/s3-presigned-post-3.485.0" = { name = "_at_aws-sdk_slash_s3-presigned-post"; packageName = "@aws-sdk/s3-presigned-post"; - version = "3.454.0"; + version = "3.485.0"; src = fetchurl { - url = "https://registry.npmjs.org/@aws-sdk/s3-presigned-post/-/s3-presigned-post-3.454.0.tgz"; - sha512 = "R5xlC2GSX9SeAjuB4qhuavA+DDITm0cuwBKZwuAiwNMN1PkVzcsEjfHzqI4TCb3xQB2BKAsICAqsPTe/buaEVQ=="; + url = "https://registry.npmjs.org/@aws-sdk/s3-presigned-post/-/s3-presigned-post-3.485.0.tgz"; + sha512 = "uu6PmQaIMrdovePeQi+DHiVuQcW4EXDcNgaL+sUeZjzPXV1/nTROgW+msMRB9nmWMhdEaVCNLUgJDf73BsYY5A=="; }; }; "@aws-sdk/s3-request-presigner-3.296.0" = { @@ -1075,13 +1057,13 @@ let sha512 = "BQv+oNA5EzJymrfh7cnMun/ougmTX3eo6bGCWn/bQdL1LyxodeVdRZacD5tN+lAUYtjhQ7yS23ozYh0lvWNEXw=="; }; }; - "@aws-sdk/s3-request-presigner-3.454.0" = { + "@aws-sdk/s3-request-presigner-3.485.0" = { name = "_at_aws-sdk_slash_s3-request-presigner"; packageName = "@aws-sdk/s3-request-presigner"; - version = "3.454.0"; + version = "3.485.0"; src = fetchurl { - url = "https://registry.npmjs.org/@aws-sdk/s3-request-presigner/-/s3-request-presigner-3.454.0.tgz"; - sha512 = "2Lr5bZkpSfl0Ixaylbv/ZGgimdzkw0I7akXwosWagnCAWRnWBnWGlWkAnHdnpHjQVamyVr0C6gST7+Y3fKh5Sg=="; + url = "https://registry.npmjs.org/@aws-sdk/s3-request-presigner/-/s3-request-presigner-3.485.0.tgz"; + sha512 = "5TCyl1H/PdBH0XDSILb9y1d/fU+tDEQ7Fkqeb2gIYENDG09dX68TtcZVGs0sMZtC9CLUFpmEp8R/3LtfuoeY6w=="; }; }; "@aws-sdk/service-error-classification-3.296.0" = { @@ -1111,13 +1093,13 @@ let sha512 = "NQyJ/FClty4VmF1WoV4rOkbN0Unn0zevzy8iJrYhqxE3Sc7lySM4Btnsd4Iqelm2dR6l+jNRApGgD8NvoGjGig=="; }; }; - "@aws-sdk/signature-v4-crt-3.451.0" = { + "@aws-sdk/signature-v4-crt-3.485.0" = { name = "_at_aws-sdk_slash_signature-v4-crt"; packageName = "@aws-sdk/signature-v4-crt"; - version = "3.451.0"; + version = "3.485.0"; src = fetchurl { - url = "https://registry.npmjs.org/@aws-sdk/signature-v4-crt/-/signature-v4-crt-3.451.0.tgz"; - sha512 = "bWoHFsAg6yF+3lpmQfYPlTbioOS+o5PfsewZn8OouAalkiRmNzuW6Pcw1ebHL7OLlp7AUAXLLO79ji+5F3NyJw=="; + url = "https://registry.npmjs.org/@aws-sdk/signature-v4-crt/-/signature-v4-crt-3.485.0.tgz"; + sha512 = "fQLUM/PG5o7zfDL2jt9MA3ZsygIYmuRsyhJ6oP1fnzky6uSlQlkZ3i9aCTn7fJn4rZe9KAkwX1+KvME5Y0dT2Q=="; }; }; "@aws-sdk/signature-v4-multi-region-3.296.0" = { @@ -1129,13 +1111,13 @@ let sha512 = "BNMXS0YJEgflPhO2KxXG4f0iTMOGdyxslDMNGmMWGGQm6bbwtqZ7Y9ZyMQYKfzk3GUPpfGQcaaSNiGfURPOCOg=="; }; }; - "@aws-sdk/signature-v4-multi-region-3.451.0" = { + "@aws-sdk/signature-v4-multi-region-3.485.0" = { name = "_at_aws-sdk_slash_signature-v4-multi-region"; packageName = "@aws-sdk/signature-v4-multi-region"; - version = "3.451.0"; + version = "3.485.0"; src = fetchurl { - url = "https://registry.npmjs.org/@aws-sdk/signature-v4-multi-region/-/signature-v4-multi-region-3.451.0.tgz"; - sha512 = "qQKY7/txeNUTLyRL3WxUWEwaZ5sf76EIZgu9kLaR96cAYSxwQi/qQB3ijbfD6u7sJIA8aROMxeYK0VmRsQg0CA=="; + url = "https://registry.npmjs.org/@aws-sdk/signature-v4-multi-region/-/signature-v4-multi-region-3.485.0.tgz"; + sha512 = "168ipXkbG75l9cKQmsBtx/4+AYjGsBoy724bXosW13t2/l/E3IzJAYUjDROiK0JXVMG85xAnGWbFwZkjxVXzrQ=="; }; }; "@aws-sdk/smithy-client-3.296.0" = { @@ -1156,13 +1138,13 @@ let sha512 = "yC1ku7A5S+o/CLlgbgDB2bx8+Wq43qj8xfohmTuIhpiP2m/NyUiRVv6S6ARONLI6bVeo1T2/BFk5Q9DfE2xzAQ=="; }; }; - "@aws-sdk/token-providers-3.451.0" = { + "@aws-sdk/token-providers-3.485.0" = { name = "_at_aws-sdk_slash_token-providers"; packageName = "@aws-sdk/token-providers"; - version = "3.451.0"; + version = "3.485.0"; src = fetchurl { - url = "https://registry.npmjs.org/@aws-sdk/token-providers/-/token-providers-3.451.0.tgz"; - sha512 = "ij1L5iUbn6CwxVOT1PG4NFjsrsKN9c4N1YEM0lkl6DwmaNOscjLKGSNyj9M118vSWsOs1ZDbTwtj++h0O/BWrQ=="; + url = "https://registry.npmjs.org/@aws-sdk/token-providers/-/token-providers-3.485.0.tgz"; + sha512 = "kOXA1WKIVIFNRqHL8ynVZ3hCKLsgnEmGr2iDR6agDNw5fYIlCO/6N2xR6QdGcLTvUUbwOlz4OvKLUQnWMKAnnA=="; }; }; "@aws-sdk/types-3.296.0" = { @@ -1174,13 +1156,13 @@ let sha512 = "s0wIac64rrMEo2ioUxP9IarGiiCGmelCspNcoNTPSjGl25QqjhyfQqTeGgS58qJ4fHoQb07qra39930xp1IzJg=="; }; }; - "@aws-sdk/types-3.451.0" = { + "@aws-sdk/types-3.485.0" = { name = "_at_aws-sdk_slash_types"; packageName = "@aws-sdk/types"; - version = "3.451.0"; + version = "3.485.0"; src = fetchurl { - url = "https://registry.npmjs.org/@aws-sdk/types/-/types-3.451.0.tgz"; - sha512 = "rhK+qeYwCIs+laJfWCcrYEjay2FR/9VABZJ2NRM89jV/fKqGVQR52E5DQqrI+oEIL5JHMhhnr4N4fyECMS35lw=="; + url = "https://registry.npmjs.org/@aws-sdk/types/-/types-3.485.0.tgz"; + sha512 = "+QW32YQdvZRDOwrAQPo/qCyXoSjgXB6RwJwCwkd8ebJXRXw6tmGKIHaZqYHt/LtBymvnaBgBBADNa4+qFvlOFw=="; }; }; "@aws-sdk/url-parser-3.296.0" = { @@ -1201,13 +1183,13 @@ let sha512 = "kSSVymcbjyQQHvCZaTt1teKKW4MSSMPRdPNxSNO1aLsVwxrWdnAggDrpHwFjvPCRUcKtpThepATOz75PfUm9Bg=="; }; }; - "@aws-sdk/util-arn-parser-3.310.0" = { + "@aws-sdk/util-arn-parser-3.465.0" = { name = "_at_aws-sdk_slash_util-arn-parser"; packageName = "@aws-sdk/util-arn-parser"; - version = "3.310.0"; + version = "3.465.0"; src = fetchurl { - url = "https://registry.npmjs.org/@aws-sdk/util-arn-parser/-/util-arn-parser-3.310.0.tgz"; - sha512 = "jL8509owp/xB9+Or0pvn3Fe+b94qfklc2yPowZZIFAkFcCSIdkIglz18cPDWnYAcy9JGewpMS1COXKIUhZkJsA=="; + url = "https://registry.npmjs.org/@aws-sdk/util-arn-parser/-/util-arn-parser-3.465.0.tgz"; + sha512 = "zOJ82vzDJFqBX9yZBlNeHHrul/kpx/DCoxzW5UBbZeb26kfV53QhMSoEmY8/lEbBqlqargJ/sgRC845GFhHNQw=="; }; }; "@aws-sdk/util-base64-3.295.0" = { @@ -1291,13 +1273,13 @@ let sha512 = "YraGGLJepXM6HCTaqEGTFf8RFRBdJ0C6uG5k0kVhiXmYxBkeupn8J07CVp9jfWqcPYWElAnMGVEZKU1OjRo4HQ=="; }; }; - "@aws-sdk/util-endpoints-3.451.0" = { + "@aws-sdk/util-endpoints-3.485.0" = { name = "_at_aws-sdk_slash_util-endpoints"; packageName = "@aws-sdk/util-endpoints"; - version = "3.451.0"; + version = "3.485.0"; src = fetchurl { - url = "https://registry.npmjs.org/@aws-sdk/util-endpoints/-/util-endpoints-3.451.0.tgz"; - sha512 = "giqLGBTnRIcKkDqwU7+GQhKbtJ5Ku35cjGQIfMyOga6pwTBUbaK0xW1Sdd8sBQ1GhApscnChzI9o/R9x0368vw=="; + url = "https://registry.npmjs.org/@aws-sdk/util-endpoints/-/util-endpoints-3.485.0.tgz"; + sha512 = "dTd642F7nJisApF8YjniqQ6U59CP/DCtar11fXf1nG9YNBCBsNNVw5ZfZb5nSNzaIdy27mQioWTCV18JEj1mxg=="; }; }; "@aws-sdk/util-format-url-3.296.0" = { @@ -1309,13 +1291,13 @@ let sha512 = "CcYECzkUAnHL5q3uyPicafn2OY0GiklIYfuOUHPZ/4FMxIesd1BnCDDRjTlFxLWjuNuiihIdwB7Qb1pDzxc3Iw=="; }; }; - "@aws-sdk/util-format-url-3.451.0" = { + "@aws-sdk/util-format-url-3.485.0" = { name = "_at_aws-sdk_slash_util-format-url"; packageName = "@aws-sdk/util-format-url"; - version = "3.451.0"; + version = "3.485.0"; src = fetchurl { - url = "https://registry.npmjs.org/@aws-sdk/util-format-url/-/util-format-url-3.451.0.tgz"; - sha512 = "gmcqSFTIISU9iN6rSbc8HVqB9ACluPbo4mS0ztkk9DaDz5zK/YxoKBJSfqkZFidMzxYiXeWruDCxD8ZgYRn6ug=="; + url = "https://registry.npmjs.org/@aws-sdk/util-format-url/-/util-format-url-3.485.0.tgz"; + sha512 = "CW82AQ8UD88jhI2OyAgT5yA8NH2KE0mgludRXYDT5uvwj6nlA7c2B+c2UJwbkMdlsUZip/XvN+jFoRR7AJH1GQ=="; }; }; "@aws-sdk/util-hex-encoding-3.295.0" = { @@ -1327,13 +1309,13 @@ let sha512 = "XJcoVo41kHzhe28PBm/rqt5mdCp8R6abwiW9ug1dA6FOoPUO8kBUxDv6xaOmA2hfRvd2ocFfBXaUCBqUowkGcQ=="; }; }; - "@aws-sdk/util-locate-window-3.310.0" = { + "@aws-sdk/util-locate-window-3.465.0" = { name = "_at_aws-sdk_slash_util-locate-window"; packageName = "@aws-sdk/util-locate-window"; - version = "3.310.0"; + version = "3.465.0"; src = fetchurl { - url = "https://registry.npmjs.org/@aws-sdk/util-locate-window/-/util-locate-window-3.310.0.tgz"; - sha512 = "qo2t/vBTnoXpjKxlsC2e1gBrRm80M3bId27r0BRB2VniSSe7bL1mmzM+/HFtujm0iAxtPM+aLEflLJlJeDPg0w=="; + url = "https://registry.npmjs.org/@aws-sdk/util-locate-window/-/util-locate-window-3.465.0.tgz"; + sha512 = "f+QNcWGswredzC1ExNAB/QzODlxwaTdXkNT5cvke2RLX8SFU5pYk6h4uCtWC0vWPELzOfMfloBrJefBzlarhsw=="; }; }; "@aws-sdk/util-middleware-3.296.0" = { @@ -1390,13 +1372,13 @@ let sha512 = "MGGG+09VkF0N+8KEht8NNE6Q7bqmddgqLkUbvzSky0y18UPEZyq9LTC4JZtzDDOzf/swgbq2IQ/5wtB81iouog=="; }; }; - "@aws-sdk/util-user-agent-browser-3.451.0" = { + "@aws-sdk/util-user-agent-browser-3.485.0" = { name = "_at_aws-sdk_slash_util-user-agent-browser"; packageName = "@aws-sdk/util-user-agent-browser"; - version = "3.451.0"; + version = "3.485.0"; src = fetchurl { - url = "https://registry.npmjs.org/@aws-sdk/util-user-agent-browser/-/util-user-agent-browser-3.451.0.tgz"; - sha512 = "Ws5mG3J0TQifH7OTcMrCTexo7HeSAc3cBgjfhS/ofzPUzVCtsyg0G7I6T7wl7vJJETix2Kst2cpOsxygPgPD9w=="; + url = "https://registry.npmjs.org/@aws-sdk/util-user-agent-browser/-/util-user-agent-browser-3.485.0.tgz"; + sha512 = "QliWbjg0uOhGTcWgWTKPMY0SBi07g253DjwrCINT1auqDrdQPxa10xozpZExBYjAK2KuhYDNUzni127ae6MHOw=="; }; }; "@aws-sdk/util-user-agent-node-3.296.0" = { @@ -1408,13 +1390,13 @@ let sha512 = "AMWac8aIBnaa9nxAEpZ752j29a/UQTViRfR5gnCX38ECBKGfOQMpgYnee5HdlMr4GHJj0WkOzQxBtInW4pV58g=="; }; }; - "@aws-sdk/util-user-agent-node-3.451.0" = { + "@aws-sdk/util-user-agent-node-3.485.0" = { name = "_at_aws-sdk_slash_util-user-agent-node"; packageName = "@aws-sdk/util-user-agent-node"; - version = "3.451.0"; + version = "3.485.0"; src = fetchurl { - url = "https://registry.npmjs.org/@aws-sdk/util-user-agent-node/-/util-user-agent-node-3.451.0.tgz"; - sha512 = "TBzm6P+ql4mkGFAjPlO1CI+w3yUT+NulaiALjl/jNX/nnUp6HsJsVxJf4nVFQTG5KRV0iqMypcs7I3KIhH+LmA=="; + url = "https://registry.npmjs.org/@aws-sdk/util-user-agent-node/-/util-user-agent-node-3.485.0.tgz"; + sha512 = "QF+aQ9jnDlPUlFBxBRqOylPf86xQuD3aEPpOErR+50qJawVvKa94uiAFdvtI9jv6hnRZmuFsTj2rsyytnbAYBA=="; }; }; "@aws-sdk/util-utf8-3.295.0" = { @@ -1453,13 +1435,13 @@ let sha512 = "7VX3Due7Ip73yfYErFDHZvhgBohC4IyMTfW49DI4C/LFKFCcAoB888MdevUkB87GoiNaRLeT3ZMZ86IWlSEaow=="; }; }; - "@aws-sdk/xml-builder-3.310.0" = { + "@aws-sdk/xml-builder-3.485.0" = { name = "_at_aws-sdk_slash_xml-builder"; packageName = "@aws-sdk/xml-builder"; - version = "3.310.0"; + version = "3.485.0"; src = fetchurl { - url = "https://registry.npmjs.org/@aws-sdk/xml-builder/-/xml-builder-3.310.0.tgz"; - sha512 = "TqELu4mOuSIKQCqj63fGVs86Yh+vBx5nHRpWKNUNhB2nPTpfbziTs5c1X358be3peVWA4wPxW7Nt53KIg1tnNw=="; + url = "https://registry.npmjs.org/@aws-sdk/xml-builder/-/xml-builder-3.485.0.tgz"; + sha512 = "xQexPM6LINOIkf3NLFywplcbApifZRMWFN41TDWYSNgCUa5uC9fntfenw8N/HTx1n+McRCWSAFBTjDqY/2OLCQ=="; }; }; "@azu/format-text-1.0.2" = { @@ -1507,13 +1489,13 @@ let sha512 = "kleJ1iUTxcO32Y06dH9Pfi9K4U+Tlb111WXEnbt7R/ne+NLRwppZiTGJuTD5VVoxTMK5NTbEtm5t2vcdNCFe2g=="; }; }; - "@azure/core-http-2.3.2" = { + "@azure/core-http-3.0.4" = { name = "_at_azure_slash_core-http"; packageName = "@azure/core-http"; - version = "2.3.2"; + version = "3.0.4"; src = fetchurl { - url = "https://registry.npmjs.org/@azure/core-http/-/core-http-2.3.2.tgz"; - sha512 = "Z4dfbglV9kNZO177CNx4bo5ekFuYwwsvjLiKdZI4r84bYGv3irrbQz7JC3/rUfFH2l4T/W6OFleJaa2X0IaQqw=="; + url = "https://registry.npmjs.org/@azure/core-http/-/core-http-3.0.4.tgz"; + sha512 = "Fok9VVhMdxAFOtqiiAtg74fL0UJkt0z3D+ouUUxcRLzZNBioPRAMJFVxiWoJljYpXsRi4GDQHzQHDc9AiYaIUQ=="; }; }; "@azure/core-lro-2.5.4" = { @@ -1543,13 +1525,13 @@ let sha512 = "Kji9k6TOFRDB5ZMTw8qUf2IJ+CeJtsuMdAHox9eqpTf1cefiNMpzrfnF6sINEBZJsaVaWgQ0o48B6kcUH68niA=="; }; }; - "@azure/core-rest-pipeline-1.12.2" = { + "@azure/core-rest-pipeline-1.13.0" = { name = "_at_azure_slash_core-rest-pipeline"; packageName = "@azure/core-rest-pipeline"; - version = "1.12.2"; + version = "1.13.0"; src = fetchurl { - url = "https://registry.npmjs.org/@azure/core-rest-pipeline/-/core-rest-pipeline-1.12.2.tgz"; - sha512 = "wLLJQdL4v1yoqYtEtjKNjf8pJ/G/BqVomAWxcKOR1KbZJyCEnCv04yks7Y1NhJ3JzxbDs307W67uX0JzklFdCg=="; + url = "https://registry.npmjs.org/@azure/core-rest-pipeline/-/core-rest-pipeline-1.13.0.tgz"; + sha512 = "a62aP/wppgmnfIkJLfcB4ssPBcH94WzrzPVJ3tlJt050zX4lfmtnvy95D3igDo3f31StO+9BgPrzvkj4aOxnoA=="; }; }; "@azure/core-tracing-1.0.0-preview.13" = { @@ -1588,13 +1570,13 @@ let sha512 = "h5taHeySlsV9qxuK64KZxy4iln1BtMYlNt5jbuEFN3UFSAd1EwKg/Gjl5a6tZ/W8t6li3xPnutOx7zbDyXnPmQ=="; }; }; - "@azure/identity-2.1.0" = { + "@azure/identity-4.0.0" = { name = "_at_azure_slash_identity"; packageName = "@azure/identity"; - version = "2.1.0"; + version = "4.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/@azure/identity/-/identity-2.1.0.tgz"; - sha512 = "BPDz1sK7Ul9t0l9YKLEa8PHqWU4iCfhGJ+ELJl6c8CP3TpJt2urNCbm0ZHsthmxRsYoMPbz2Dvzj30zXZVmAFw=="; + url = "https://registry.npmjs.org/@azure/identity/-/identity-4.0.0.tgz"; + sha512 = "gtPYxIL0kI39Dw4t3HvlbfhOdXqKD2MqDgynlklF0j728j51dcKgRo6FLX0QzpBw/1gGfLxjMXqq3nKOSQ2lmA=="; }; }; "@azure/logger-1.0.4" = { @@ -1606,40 +1588,31 @@ let sha512 = "ustrPY8MryhloQj7OWGe+HrYx+aoiOxzbXTtgblbV3xwCqpzUK36phH3XNHQKj3EPonyFUuDTfR3qFhTEAuZEg=="; }; }; - "@azure/msal-browser-2.38.3" = { + "@azure/msal-browser-3.6.0" = { name = "_at_azure_slash_msal-browser"; packageName = "@azure/msal-browser"; - version = "2.38.3"; - src = fetchurl { - url = "https://registry.npmjs.org/@azure/msal-browser/-/msal-browser-2.38.3.tgz"; - sha512 = "2WuLFnWWPR1IdvhhysT18cBbkXx1z0YIchVss5AwVA95g7CU5CpT3d+5BcgVGNXDXbUU7/5p0xYHV99V5z8C/A=="; - }; - }; - "@azure/msal-common-13.3.1" = { - name = "_at_azure_slash_msal-common"; - packageName = "@azure/msal-common"; - version = "13.3.1"; + version = "3.6.0"; src = fetchurl { - url = "https://registry.npmjs.org/@azure/msal-common/-/msal-common-13.3.1.tgz"; - sha512 = "Lrk1ozoAtaP/cp53May3v6HtcFSVxdFrg2Pa/1xu5oIvsIwhxW6zSPibKefCOVgd5osgykMi5jjcZHv8XkzZEQ=="; + url = "https://registry.npmjs.org/@azure/msal-browser/-/msal-browser-3.6.0.tgz"; + sha512 = "FrFBJXRJMyWXjAjg4cUNZwEKktzfzD/YD9+S1kj2ors67hKoveam4aL0bZuCZU/jTiHTn0xDQGQh2ksCMXTXtA=="; }; }; - "@azure/msal-common-7.6.0" = { + "@azure/msal-common-14.5.0" = { name = "_at_azure_slash_msal-common"; packageName = "@azure/msal-common"; - version = "7.6.0"; + version = "14.5.0"; src = fetchurl { - url = "https://registry.npmjs.org/@azure/msal-common/-/msal-common-7.6.0.tgz"; - sha512 = "XqfbglUTVLdkHQ8F9UQJtKseRr3sSnr9ysboxtoswvaMVaEfvyLtMoHv9XdKUfOc0qKGzNgRFd9yRjIWVepl6Q=="; + url = "https://registry.npmjs.org/@azure/msal-common/-/msal-common-14.5.0.tgz"; + sha512 = "Gx5rZbiZV/HiZ2nEKfjfAF/qDdZ4/QWxMvMo2jhIFVz528dVKtaZyFAOtsX2Ak8+TQvRsGCaEfuwJFuXB6tu1A=="; }; }; - "@azure/msal-node-1.18.4" = { + "@azure/msal-node-2.6.0" = { name = "_at_azure_slash_msal-node"; packageName = "@azure/msal-node"; - version = "1.18.4"; + version = "2.6.0"; src = fetchurl { - url = "https://registry.npmjs.org/@azure/msal-node/-/msal-node-1.18.4.tgz"; - sha512 = "Kc/dRvhZ9Q4+1FSfsTFDME/v6+R2Y1fuMty/TfwqE5p9GTPw08BPbKgeWinE8JRHRp+LemjQbUZsn4Q4l6Lszg=="; + url = "https://registry.npmjs.org/@azure/msal-node/-/msal-node-2.6.0.tgz"; + sha512 = "RWAWCYYrSldIYC47oWtofIun41e6SB9TBYgGYsezq6ednagwo9ZRFyRsvl1NabmdTkdDDXRAABIdveeN2Gtd8w=="; }; }; "@azure/opentelemetry-instrumentation-azure-sdk-1.0.0-beta.5" = { @@ -1651,13 +1624,13 @@ let sha512 = "fsUarKQDvjhmBO4nIfaZkfNSApm1hZBzcvpNbSrXdcUBxu7lRvKsV5DnwszX7cnhLyVOW9yl1uigtRQ1yDANjA=="; }; }; - "@azure/storage-blob-12.11.0" = { + "@azure/storage-blob-12.17.0" = { name = "_at_azure_slash_storage-blob"; packageName = "@azure/storage-blob"; - version = "12.11.0"; + version = "12.17.0"; src = fetchurl { - url = "https://registry.npmjs.org/@azure/storage-blob/-/storage-blob-12.11.0.tgz"; - sha512 = "na+FisoARuaOWaHWpmdtk3FeuTWf2VWamdJ9/TJJzj5ZdXPLC3juoDgFs6XVuJIoK30yuBpyFBEDXVRK4pB7Tg=="; + url = "https://registry.npmjs.org/@azure/storage-blob/-/storage-blob-12.17.0.tgz"; + sha512 = "sM4vpsCpcCApagRW5UIjQNlNylo02my2opgp0Emi8x888hZUvJ3dN69Oq20cEGXkMUWnoCrBaB0zyS3yeB87sQ=="; }; }; "@babel/cli-7.23.4" = { @@ -1696,31 +1669,31 @@ let sha512 = "TDCmlK5eOvH+eH7cdAFlNXeVJqWIQ7gW9tY1GJIpUtFb6CmjVyq2VM3u71bOyR8CRihcCgMUYoDNyLXao3+70Q=="; }; }; - "@babel/code-frame-7.23.4" = { + "@babel/code-frame-7.23.5" = { name = "_at_babel_slash_code-frame"; packageName = "@babel/code-frame"; - version = "7.23.4"; + version = "7.23.5"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/code-frame/-/code-frame-7.23.4.tgz"; - sha512 = "r1IONyb6Ia+jYR2vvIDhdWdlTGhqbBoFqLTQidzZ4kepUFH15ejXvFHxCVbtl7BOXIudsIubf4E81xeA3h3IXA=="; + url = "https://registry.npmjs.org/@babel/code-frame/-/code-frame-7.23.5.tgz"; + sha512 = "CgH3s1a96LipHCmSUmYFPwY7MNx8C3avkq7i4Wl3cfa662ldtUe4VM1TPXX70pfmrlWTb6jLqTYrZyT2ZTJBgA=="; }; }; - "@babel/compat-data-7.23.3" = { + "@babel/compat-data-7.23.5" = { name = "_at_babel_slash_compat-data"; packageName = "@babel/compat-data"; - version = "7.23.3"; + version = "7.23.5"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/compat-data/-/compat-data-7.23.3.tgz"; - sha512 = "BmR4bWbDIoFJmJ9z2cZ8Gmm2MXgEDgjdWgpKmKWUt54UGFJdlj31ECtbaDvCG/qVdG3AQ1SfpZEs01lUFbzLOQ=="; + url = "https://registry.npmjs.org/@babel/compat-data/-/compat-data-7.23.5.tgz"; + sha512 = "uU27kfDRlhfKl+w1U6vp16IuvSLtjAxdArVXPa9BvLkrr7CYIsxH5adpHObeAGY/41+syctUWOZ140a2Rvkgjw=="; }; }; - "@babel/core-7.23.3" = { + "@babel/core-7.23.7" = { name = "_at_babel_slash_core"; packageName = "@babel/core"; - version = "7.23.3"; + version = "7.23.7"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/core/-/core-7.23.3.tgz"; - sha512 = "Jg+msLuNuCJDyBvFv5+OKOUjWMZgd85bKjbICd3zWrKAo+bJ49HJufi7CQE0q0uR8NGyO6xkCACScNqyjHSZew=="; + url = "https://registry.npmjs.org/@babel/core/-/core-7.23.7.tgz"; + sha512 = "+UpDgowcmqe36d4NwqvKsyPMlOLNGMsfMmQ5WGCu+siCe3t3dfe9njrzGfdN4qq+bcNUt0+Vw6haRxBOycs4dw=="; }; }; "@babel/generator-7.17.7" = { @@ -1741,13 +1714,13 @@ let sha512 = "W1lG5vUwFvfMd8HVXqdfbuG7RuaSrTCCD8cl8fP8wOivdbtbIg2Db3IWUcgvfxKbbn6ZBGYRW/Zk1MIwK49mgw=="; }; }; - "@babel/generator-7.23.4" = { + "@babel/generator-7.23.6" = { name = "_at_babel_slash_generator"; packageName = "@babel/generator"; - version = "7.23.4"; + version = "7.23.6"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/generator/-/generator-7.23.4.tgz"; - sha512 = "esuS49Cga3HcThFNebGhlgsrVLkvhqvYDTzgjfFFlHJcIfLe5jFmRRfCQ1KuBfc4Jrtn3ndLgKWAKjBE+IraYQ=="; + url = "https://registry.npmjs.org/@babel/generator/-/generator-7.23.6.tgz"; + sha512 = "qrSfCYxYQB5owCmGLbl8XRpX1ytXlpueOb0N0UmQwA073KZxejgQTzAmJezxvpwQD9uGtK2shHdi55QT+MbjIw=="; }; }; "@babel/helper-annotate-as-pure-7.22.5" = { @@ -1768,22 +1741,22 @@ let sha512 = "QkBXwGgaoC2GtGZRoma6kv7Szfv06khvhFav67ZExau2RaXzy8MpHSMO2PNoP2XtmQphJQRHFfg77Bq731Yizw=="; }; }; - "@babel/helper-compilation-targets-7.22.15" = { + "@babel/helper-compilation-targets-7.23.6" = { name = "_at_babel_slash_helper-compilation-targets"; packageName = "@babel/helper-compilation-targets"; - version = "7.22.15"; + version = "7.23.6"; src = fetchurl { - url = 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"@commitlint/types-18.4.4" = { name = "_at_commitlint_slash_types"; packageName = "@commitlint/types"; - version = "18.4.3"; + version = "18.4.4"; src = fetchurl { - url = "https://registry.npmjs.org/@commitlint/types/-/types-18.4.3.tgz"; - sha512 = "cvzx+vtY/I2hVBZHCLrpoh+sA0hfuzHwDc+BAFPimYLjJkpHnghQM+z8W/KyLGkygJh3BtI3xXXq+dKjnSWEmA=="; + url = "https://registry.npmjs.org/@commitlint/types/-/types-18.4.4.tgz"; + sha512 = "/FykLtodD8gKs3+VNkAUwofu4LBHankclj+I8fB2jTRvG6PV7k/OUt4P+VbM7ip853qS4F0g7Z6hLNa6JeMcAQ=="; }; }; "@cronvel/get-pixels-3.4.1" = { @@ -3334,58 +3262,58 @@ let sha512 = "gB5C5nDIacLUdsMuW8YsM9SzK3vaFANe4J11CVXpovpy7bZUGrcJKmc6m/0gWG789pKr6XSZY2aEetjFvSRw5g=="; }; }; - "@cspell/cspell-bundled-dicts-8.0.0" = { + "@cspell/cspell-bundled-dicts-8.3.2" = { name = "_at_cspell_slash_cspell-bundled-dicts"; packageName = "@cspell/cspell-bundled-dicts"; - version = "8.0.0"; + version = "8.3.2"; src = fetchurl { - url = "https://registry.npmjs.org/@cspell/cspell-bundled-dicts/-/cspell-bundled-dicts-8.0.0.tgz"; - sha512 = "Phbb1ij1TQQuqxuuvxf5P6fvV9U+EVoATNLmDqFHvRZfUyuhgbJuCMzIPeBx4GfTTDWlPs51FYRvZ/Q8xBHsyA=="; + url = "https://registry.npmjs.org/@cspell/cspell-bundled-dicts/-/cspell-bundled-dicts-8.3.2.tgz"; + sha512 = "3ubOgz1/MDixJbq//0rQ2omB3cSdhVJDviERZeiREGz4HOq84aaK1Fqbw5SjNZHvhpoq+AYXm6kJbIAH8YhKgg=="; }; }; - "@cspell/cspell-json-reporter-8.0.0" = { + "@cspell/cspell-json-reporter-8.3.2" = { name = "_at_cspell_slash_cspell-json-reporter"; packageName = "@cspell/cspell-json-reporter"; - version = "8.0.0"; + version = "8.3.2"; src = fetchurl { - url = "https://registry.npmjs.org/@cspell/cspell-json-reporter/-/cspell-json-reporter-8.0.0.tgz"; - sha512 = "1ltK5N4xMGWjDSIkU+GJd3rXV8buXgO/lAgnpM1RhKWqAmG+u0k6pnhk2vIo/4qZQpgfK0l3J3h/Ky2FcE95vA=="; + url = "https://registry.npmjs.org/@cspell/cspell-json-reporter/-/cspell-json-reporter-8.3.2.tgz"; + sha512 = 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"gtALHFLT2vSZ7BZlIg26AY3W9gkiqxPGE75iypWz06JHJs05ngnAR+h6VOu0+rmgx98hNfzPPEh4g+Tjm8Ma0A=="; + url = "https://registry.npmjs.org/@cspell/cspell-resolver/-/cspell-resolver-8.3.2.tgz"; + sha512 = "w2Tmb95bzdEz9L4W5qvsP5raZbyEzKL7N2ksU/+yh8NEJcTuExmAl/nMnb3aIk7m2b+kPHnMOcJuwfUMLmyv4A=="; }; }; - "@cspell/cspell-service-bus-8.0.0" = { + "@cspell/cspell-service-bus-8.3.2" = { name = "_at_cspell_slash_cspell-service-bus"; packageName = "@cspell/cspell-service-bus"; - version = "8.0.0"; + version = "8.3.2"; src = fetchurl { - url = "https://registry.npmjs.org/@cspell/cspell-service-bus/-/cspell-service-bus-8.0.0.tgz"; - sha512 = "1EYhIHoZnhxpfEp6Bno6yVWYBuYfaQrwIfeDMntnezUcSmi7RyroQEcp5U7sLv69vhRD2c81o7r8iUaAbPSmIg=="; + url = "https://registry.npmjs.org/@cspell/cspell-service-bus/-/cspell-service-bus-8.3.2.tgz"; + sha512 = "skTHNyVi74//W/O+f4IauDhm6twA9S2whkylonsIzPxEl4Pn3y2ZEMXNki/MWUwZfDIzKKSxlcREH61g7zCvhg=="; }; }; - "@cspell/cspell-types-8.0.0" = { + "@cspell/cspell-types-8.3.2" = { name = "_at_cspell_slash_cspell-types"; packageName = "@cspell/cspell-types"; - version = "8.0.0"; + version = "8.3.2"; src = fetchurl { - url = "https://registry.npmjs.org/@cspell/cspell-types/-/cspell-types-8.0.0.tgz"; - sha512 = "dPdxQI8dLJoJEjylaPYfCJNnm2XNMYPuowHE2FMcsnFR9hEchQAhnKVc/aD63IUYnUtUrPxPlUJdoAoj569e+g=="; + url = "https://registry.npmjs.org/@cspell/cspell-types/-/cspell-types-8.3.2.tgz"; + sha512 = "qS/gWd9ItOrN6ZX5pwC9lJjnBoyiAyhxYq0GUXuV892LQvwrBmECGk6KhsA1lPW7JJS7o57YTAS1jmXnmXMEpg=="; }; }; "@cspell/dict-ada-4.0.2" = { @@ -3406,13 +3334,13 @@ let sha512 = "K21CfB4ZpKYwwDQiPfic2zJA/uxkbsd4IQGejEvDAhE3z8wBs6g6BwwqdVO767M9NgZqc021yAVpr79N5pWe3w=="; }; }; - "@cspell/dict-aws-4.0.0" = { + "@cspell/dict-aws-4.0.1" = { name = "_at_cspell_slash_dict-aws"; packageName = "@cspell/dict-aws"; - version = "4.0.0"; + version = "4.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/@cspell/dict-aws/-/dict-aws-4.0.0.tgz"; - sha512 = "1YkCMWuna/EGIDN/zKkW+j98/55mxigftrSFgsehXhPld+ZMJM5J9UuBA88YfL7+/ETvBdd7mwW6IwWsC+/ltQ=="; + url = "https://registry.npmjs.org/@cspell/dict-aws/-/dict-aws-4.0.1.tgz"; + sha512 = "NXO+kTPQGqaaJKa4kO92NAXoqS+i99dQzf3/L1BxxWVSBS3/k1f3uhmqIh7Crb/n22W793lOm0D9x952BFga3Q=="; }; }; "@cspell/dict-bash-1.0.18" = { @@ -3424,13 +3352,13 @@ let sha512 = "kJIqQ+FD2TCSgaaP5XLEDgy222+pVWTc+VhveNO++gnTWU3BCVjkD5LjfW7g/CmGONnz+nwXDueWspProaSdJw=="; }; }; - "@cspell/dict-bash-4.1.2" = { + "@cspell/dict-bash-4.1.3" = { name = "_at_cspell_slash_dict-bash"; packageName = "@cspell/dict-bash"; - version = "4.1.2"; + version = "4.1.3"; src = fetchurl { - url = "https://registry.npmjs.org/@cspell/dict-bash/-/dict-bash-4.1.2.tgz"; - sha512 = "AEBWjbaMaJEyAjOHW0F15P2izBjli2cNerG3NjuVH7xX/HUUeNoTj8FF1nwpMufKwGQCvuyO2hCmkVxhJ0y55Q=="; + url = "https://registry.npmjs.org/@cspell/dict-bash/-/dict-bash-4.1.3.tgz"; + sha512 = "tOdI3QVJDbQSwPjUkOiQFhYcu2eedmX/PtEpVWg0aFps/r6AyjUQINtTgpqMYnYuq8O1QUIQqnpx21aovcgZCw=="; }; }; "@cspell/dict-companies-1.0.40" = { @@ -3442,13 +3370,13 @@ let sha512 = "Aw07qiTroqSST2P5joSrC4uOA05zTXzI2wMb+me3q4Davv1D9sCkzXY0TGoC2vzhNv5ooemRi9KATGaBSdU1sw=="; }; }; - "@cspell/dict-companies-3.0.28" = { + "@cspell/dict-companies-3.0.29" = { name = "_at_cspell_slash_dict-companies"; packageName = "@cspell/dict-companies"; - version = "3.0.28"; + version = "3.0.29"; src = fetchurl { - url = "https://registry.npmjs.org/@cspell/dict-companies/-/dict-companies-3.0.28.tgz"; - sha512 = "UinHkMYB/1pUkLKm1PGIm9PBFYxeAa6YvbB1Rq/RAAlrs0WDwiDBr3BAYdxydukG1IqqwT5z9WtU+8D/yV/5lw=="; + url = "https://registry.npmjs.org/@cspell/dict-companies/-/dict-companies-3.0.29.tgz"; + sha512 = "F/8XnkqjU7jmSDAcD3LSSX+WxCVUWPssqlO4lzGMIK3MNIUt+d48eSIt3pFAIB/Z9y0ojoLHUtWX9HJ1ZtGrXQ=="; }; }; "@cspell/dict-cpp-1.1.40" = { @@ -3460,13 +3388,13 @@ let sha512 = "sscfB3woNDNj60/yGXAdwNtIRWZ89y35xnIaJVDMk5TPMMpaDvuk0a34iOPIq0g4V+Y8e3RyAg71SH6ADwSjGw=="; }; }; - "@cspell/dict-cpp-5.0.9" = { + "@cspell/dict-cpp-5.1.1" = { name = "_at_cspell_slash_dict-cpp"; packageName = "@cspell/dict-cpp"; - version = "5.0.9"; + version = "5.1.1"; src = fetchurl { - url = "https://registry.npmjs.org/@cspell/dict-cpp/-/dict-cpp-5.0.9.tgz"; - sha512 = "ql9WPNp8c+fhdpVpjpZEUWmxBHJXs9CJuiVVfW/iwv5AX7VuMHyEwid+9/6nA8qnCxkUQ5pW83Ums1lLjn8ScA=="; + url = "https://registry.npmjs.org/@cspell/dict-cpp/-/dict-cpp-5.1.1.tgz"; + sha512 = "Qy9fNsR/5RcQ6G85gDKFjvzh0AdgAilLQeSXPtqY21Fx1kCjUqdVVJYMmHUREgcxH6ptAxtn5knTWU4PIhQtOw=="; }; }; "@cspell/dict-cryptocurrencies-1.0.10" = { @@ -3478,13 +3406,13 @@ let sha512 = "47ABvDJOkaST/rXipNMfNvneHUzASvmL6K/CbOFpYKfsd0x23Jc9k1yaOC7JAm82XSC/8a7+3Yu+Fk2jVJNnsA=="; }; }; - "@cspell/dict-cryptocurrencies-4.0.0" = { + "@cspell/dict-cryptocurrencies-5.0.0" = { name = "_at_cspell_slash_dict-cryptocurrencies"; packageName = "@cspell/dict-cryptocurrencies"; - version = "4.0.0"; + version = "5.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/@cspell/dict-cryptocurrencies/-/dict-cryptocurrencies-4.0.0.tgz"; - sha512 = "EiZp91ATyRxTmauIQfOX9adLYCunKjHEh092rrM7o2eMXP9n7zpXAL9BK7LviL+LbB8VDOm21q+s83cKrrRrsg=="; + url = "https://registry.npmjs.org/@cspell/dict-cryptocurrencies/-/dict-cryptocurrencies-5.0.0.tgz"; + sha512 = "Z4ARIw5+bvmShL+4ZrhDzGhnc9znaAGHOEMaB/GURdS/jdoreEDY34wdN0NtdLHDO5KO7GduZnZyqGdRoiSmYA=="; }; }; "@cspell/dict-csharp-1.0.11" = { @@ -3604,13 +3532,13 @@ let sha512 = "g+uKLWvOp9IEZvrIvBPTr/oaO6619uH/wyqypqvwpmnmpjcfi8+/hqZH8YNKt15oviK8k4CkINIqNhyndG9d9Q=="; }; }; - "@cspell/dict-en-common-misspellings-1.0.2" = { + "@cspell/dict-en-common-misspellings-2.0.0" = { name = "_at_cspell_slash_dict-en-common-misspellings"; packageName = "@cspell/dict-en-common-misspellings"; - version = "1.0.2"; + version = "2.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/@cspell/dict-en-common-misspellings/-/dict-en-common-misspellings-1.0.2.tgz"; - sha512 = "jg7ZQZpZH7+aAxNBlcAG4tGhYF6Ksy+QS5Df73Oo+XyckBjC9QS+PrRwLTeYoFIgXy5j3ICParK5r3MSSoL4gw=="; + url = "https://registry.npmjs.org/@cspell/dict-en-common-misspellings/-/dict-en-common-misspellings-2.0.0.tgz"; + sha512 = "NOg8dlv37/YqLkCfBs5OXeJm/Wcfb/CzeOmOZJ2ZXRuxwsNuolb4TREUce0yAXRqMhawahY5TSDRJJBgKjBOdw=="; }; }; "@cspell/dict-en-gb-1.1.33" = { @@ -3631,13 +3559,13 @@ let sha512 = "UPwR4rfiJCxnS+Py+EK9E4AUj3aPZE4p/yBRSHN+5aBQConlI0lLDtMceH5wlupA/sQTU1ERZGPJA9L96jVSyQ=="; }; }; - "@cspell/dict-en_us-4.3.11" = { + "@cspell/dict-en_us-4.3.13" = { name = "_at_cspell_slash_dict-en_us"; packageName = "@cspell/dict-en_us"; - version = "4.3.11"; + version = "4.3.13"; src = fetchurl { - url = "https://registry.npmjs.org/@cspell/dict-en_us/-/dict-en_us-4.3.11.tgz"; - sha512 = "GhdavZFlS2YbUNcRtPbgJ9j6aUyq116LmDQ2/Q5SpQxJ5/6vVs8Yj5WxV1JD+Zh/Zim1NJDcneTOuLsUGi+Czw=="; + url = "https://registry.npmjs.org/@cspell/dict-en_us/-/dict-en_us-4.3.13.tgz"; + sha512 = "T6lHiGCjloGNE0d8CogF+efJZPCAP8zdzn+KnlI0Bmjaz5nvG2LTX7CXl1zkOl1nYYev0FuIk9WJ9YPVRjcFbQ=="; }; }; "@cspell/dict-filetypes-1.1.8" = { @@ -3712,13 +3640,13 @@ let sha512 = "hbDduNXlk4AOY0wFxcDMWBPpm34rpqJBeqaySeoUH70eKxpxm+dvjpoRLJgyu0TmymEICCQSl6lAHTHSDiWKZg=="; }; }; - "@cspell/dict-git-2.0.0" = { + "@cspell/dict-git-3.0.0" = { name = "_at_cspell_slash_dict-git"; packageName = "@cspell/dict-git"; - version = "2.0.0"; + version = "3.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/@cspell/dict-git/-/dict-git-2.0.0.tgz"; - sha512 = "n1AxyX5Kgxij/sZFkxFJlzn3K9y/sCcgVPg/vz4WNJ4K9YeTsUmyGLA2OQI7d10GJeiuAo2AP1iZf2A8j9aj2w=="; + url = "https://registry.npmjs.org/@cspell/dict-git/-/dict-git-3.0.0.tgz"; + sha512 = "simGS/lIiXbEaqJu9E2VPoYW1OTC2xrwPPXNXFMa2uo/50av56qOuaxDrZ5eH1LidFXwoc8HROCHYeKoNrDLSw=="; }; }; "@cspell/dict-golang-1.1.24" = { @@ -3730,13 +3658,13 @@ let sha512 = "qq3Cjnx2U1jpeWAGJL1GL0ylEhUMqyaR36Xij6Y6Aq4bViCRp+HRRqk0x5/IHHbOrti45h3yy7ii1itRFo+Xkg=="; }; }; - "@cspell/dict-golang-6.0.4" = { + "@cspell/dict-golang-6.0.5" = { name = "_at_cspell_slash_dict-golang"; packageName = "@cspell/dict-golang"; - version = "6.0.4"; + version = "6.0.5"; src = fetchurl { - url = "https://registry.npmjs.org/@cspell/dict-golang/-/dict-golang-6.0.4.tgz"; - sha512 = "jOfewPEyN6U9Q80okE3b1PTYBfqZgHh7w4o271GSuAX+VKJ1lUDhdR4bPKRxSDdO5jHArw2u5C8nH2CWGuygbQ=="; + url = "https://registry.npmjs.org/@cspell/dict-golang/-/dict-golang-6.0.5.tgz"; + sha512 = "w4mEqGz4/wV+BBljLxduFNkMrd3rstBNDXmoX5kD4UTzIb4Sy0QybWCtg2iVT+R0KWiRRA56QKOvBsgXiddksA=="; }; }; "@cspell/dict-haskell-1.0.13" = { @@ -3865,13 +3793,13 @@ let sha512 = "YiHDt8kmHJ8nSBy0tHzaxiuitYp+oJ66ffCYuFWTNB3//Y0SI4OGHU3omLsQVeXIfCeVrO4DrVvRDoCls9B5zQ=="; }; }; - "@cspell/dict-lua-4.0.2" = { + "@cspell/dict-lua-4.0.3" = { name = "_at_cspell_slash_dict-lua"; packageName = "@cspell/dict-lua"; - version = "4.0.2"; + version = "4.0.3"; src = fetchurl { - url = "https://registry.npmjs.org/@cspell/dict-lua/-/dict-lua-4.0.2.tgz"; - sha512 = "eeC20Q+UnHcTVBK6pgwhSjGIVugO2XqU7hv4ZfXp2F9DxGx1RME0+1sKX4qAGhdFGwOBsEzb2fwUsAEP6Mibpg=="; + url = "https://registry.npmjs.org/@cspell/dict-lua/-/dict-lua-4.0.3.tgz"; + sha512 = "lDHKjsrrbqPaea13+G9s0rtXjMO06gPXPYRjRYawbNmo4E/e3XFfVzeci3OQDQNDmf2cPOwt9Ef5lu2lDmwfJg=="; }; }; "@cspell/dict-makefile-1.0.0" = { @@ -3910,13 +3838,13 @@ let sha512 = "RwkuZGcYBxL3Yux3cSG/IOWGlQ1e9HLCpHeyMtTVGYKAIkFAVUnGrz20l16/Q7zUG7IEktBz5O42kAozrEnqMQ=="; }; }; - "@cspell/dict-npm-5.0.13" = { + "@cspell/dict-npm-5.0.14" = { name = "_at_cspell_slash_dict-npm"; packageName = "@cspell/dict-npm"; - version = "5.0.13"; + version = "5.0.14"; src = fetchurl { - url = "https://registry.npmjs.org/@cspell/dict-npm/-/dict-npm-5.0.13.tgz"; - sha512 = "uPb3DlQA/FvlmzT5RjZoy7fy91mxMRZW1B+K3atVM5A/cmP1QlDaSW/iCtde5kHET1MOV7uxz+vy0Yha2OI5pQ=="; + url = "https://registry.npmjs.org/@cspell/dict-npm/-/dict-npm-5.0.14.tgz"; + sha512 = "k0kC7/W2qG5YII+SW6s+JtvKrkZg651vizi5dv/5G2HmJaeLNgDqBVeeDk/uV+ntBorM66XG4BPMjSxoaIlC5w=="; }; }; "@cspell/dict-php-1.0.25" = { @@ -3928,13 +3856,13 @@ let sha512 = "RoBIP5MRdByyPaXcznZMfOY1JdCMYPPLua5E9gkq0TJO7bX5mC9hyAKfYBSWVQunZydd82HZixjb5MPkDFU1uw=="; }; }; - "@cspell/dict-php-4.0.4" = { + "@cspell/dict-php-4.0.5" = { name = "_at_cspell_slash_dict-php"; packageName = "@cspell/dict-php"; - version = "4.0.4"; + version = "4.0.5"; src = fetchurl { - url = "https://registry.npmjs.org/@cspell/dict-php/-/dict-php-4.0.4.tgz"; - sha512 = "fRlLV730fJbulDsLIouZxXoxHt3KIH6hcLFwxaupHL+iTXDg0lo7neRpbqD5MScr/J3idEr7i9G8XWzIikKFug=="; + url = "https://registry.npmjs.org/@cspell/dict-php/-/dict-php-4.0.5.tgz"; + sha512 = "9r8ao7Z/mH9Z8pSB7yLtyvcCJWw+/MnQpj7xGVYzIV7V2ZWDRjXZAMgteHMJ37m8oYz64q5d4tiipD300QSetQ=="; }; }; "@cspell/dict-powershell-1.0.19" = { @@ -3946,13 +3874,13 @@ let sha512 = "zF/raM/lkhXeHf4I43OtK0gP9rBeEJFArscTVwLWOCIvNk21MJcNoTYoaGw+c056+Q+hJL0psGLO7QN+mxYH1A=="; }; }; - "@cspell/dict-powershell-5.0.2" = { + "@cspell/dict-powershell-5.0.3" = { name = "_at_cspell_slash_dict-powershell"; packageName = "@cspell/dict-powershell"; - version = "5.0.2"; + version = "5.0.3"; src = fetchurl { - url = "https://registry.npmjs.org/@cspell/dict-powershell/-/dict-powershell-5.0.2.tgz"; - sha512 = "IHfWLme3FXE7vnOmMncSBxOsMTdNWd1Vcyhag03WS8oANSgX8IZ+4lMI00mF0ptlgchf16/OU8WsV4pZfikEFw=="; + url = "https://registry.npmjs.org/@cspell/dict-powershell/-/dict-powershell-5.0.3.tgz"; + sha512 = "lEdzrcyau6mgzu1ie98GjOEegwVHvoaWtzQnm1ie4DyZgMr+N6D0Iyj1lzvtmt0snvsDFa5F2bsYzf3IMKcpcA=="; }; }; "@cspell/dict-public-licenses-2.0.5" = { @@ -3973,13 +3901,13 @@ let sha512 = "KuyOQaby9NID/pn7EkXilpUxjVIvvyLzhr7BPsDS6FcvUE8Yhss6bJowEDHSv6pa+W2387phoqbDf2rTicquAA=="; }; }; - "@cspell/dict-python-4.1.10" = { + "@cspell/dict-python-4.1.11" = { name = "_at_cspell_slash_dict-python"; packageName = "@cspell/dict-python"; - version = "4.1.10"; + version = "4.1.11"; src = fetchurl { - url = "https://registry.npmjs.org/@cspell/dict-python/-/dict-python-4.1.10.tgz"; - sha512 = "ErF/Ohcu6Xk4QVNzFgo8p7CxkxvAKAmFszvso41qOOhu8CVpB35ikBRpGVDw9gsCUtZzi15Yl0izi4do6WcLkA=="; + url = "https://registry.npmjs.org/@cspell/dict-python/-/dict-python-4.1.11.tgz"; + sha512 = "XG+v3PumfzUW38huSbfT15Vqt3ihNb462ulfXifpQllPok5OWynhszCLCRQjQReV+dgz784ST4ggRxW452/kVg=="; }; }; "@cspell/dict-r-2.0.1" = { @@ -4000,13 +3928,13 @@ let sha512 = "I76hJA///lc1pgmDTGUFHN/O8KLIZIU/8TgIYIGI6Ix/YzSEvWNdQYbANn6JbCynS0X+7IbZ2Ft+QqvmGtIWuA=="; }; }; - "@cspell/dict-ruby-5.0.1" = { + "@cspell/dict-ruby-5.0.2" = { name = "_at_cspell_slash_dict-ruby"; packageName = "@cspell/dict-ruby"; - version = "5.0.1"; + version = "5.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/@cspell/dict-ruby/-/dict-ruby-5.0.1.tgz"; - sha512 = "rruTm7Emhty/BSYavSm8ZxRuVw0OBqzJkwIFXcV0cX7To8D1qbmS9HFHRuRg8IL11+/nJvtdDz+lMFBSmPUagQ=="; + url = "https://registry.npmjs.org/@cspell/dict-ruby/-/dict-ruby-5.0.2.tgz"; + sha512 = "cIh8KTjpldzFzKGgrqUX4bFyav5lC52hXDKo4LbRuMVncs3zg4hcSf4HtURY+f2AfEZzN6ZKzXafQpThq3dl2g=="; }; }; "@cspell/dict-rust-1.0.23" = { @@ -4054,22 +3982,22 @@ let sha512 = "pfF3Ys2gRffu5ElqkH7FQMDMi/iZMyOzpGMb3FSH0PJ2AnRQ5rRNWght1h2L36YxvXl0mWVaFrrfwiOyRIc8ZQ=="; }; }; - "@cspell/dict-software-terms-3.3.10" = { + "@cspell/dict-software-terms-3.3.16" = { name = "_at_cspell_slash_dict-software-terms"; packageName = "@cspell/dict-software-terms"; - version = "3.3.10"; + version = "3.3.16"; src = fetchurl { - url = "https://registry.npmjs.org/@cspell/dict-software-terms/-/dict-software-terms-3.3.10.tgz"; - sha512 = "ifc9iLKXf8L6YCtUZMj2+59l+DONsjFd8SbjyceRxsGmhN/VID550qqI6xi4r4Fu+TIahKrRL0FRdN91ZX9fpQ=="; + url = "https://registry.npmjs.org/@cspell/dict-software-terms/-/dict-software-terms-3.3.16.tgz"; + sha512 = "ixorEP80LGxAU+ODVSn/CYIDjV0XAlZ2VrBu7CT+PwUFJ7h8o3JX1ywKB4qnt0hHru3JjWFtBoBThmZdrXnREQ=="; }; }; - "@cspell/dict-sql-2.1.2" = { + "@cspell/dict-sql-2.1.3" = { name = "_at_cspell_slash_dict-sql"; packageName = "@cspell/dict-sql"; - version = "2.1.2"; + version = "2.1.3"; src = fetchurl { - url = "https://registry.npmjs.org/@cspell/dict-sql/-/dict-sql-2.1.2.tgz"; - sha512 = "Pi0hAcvsSGtZZeyyAN1VfGtQJbrXos5x2QjJU0niAQKhmITSOrXU/1II1Gogk+FYDjWyV9wP2De0U2f7EWs6oQ=="; + url = "https://registry.npmjs.org/@cspell/dict-sql/-/dict-sql-2.1.3.tgz"; + sha512 = "SEyTNKJrjqD6PAzZ9WpdSu6P7wgdNtGV2RV8Kpuw1x6bV+YsSptuClYG+JSdRExBTE6LwIe1bTklejUp3ZP8TQ=="; }; }; "@cspell/dict-svelte-1.0.2" = { @@ -4117,22 +4045,22 @@ let sha512 = "niiEMPWPV9IeRBRzZ0TBZmNnkK3olkOPYxC1Ny2AX4TGlYRajcW0WUtoSHmvvjZNfWLSg2L6ruiBeuPSbjnG6A=="; }; }; - "@cspell/dynamic-import-8.0.0" = { + "@cspell/dynamic-import-8.3.2" = { name = "_at_cspell_slash_dynamic-import"; packageName = "@cspell/dynamic-import"; - version = "8.0.0"; + version = "8.3.2"; src = fetchurl { - url = "https://registry.npmjs.org/@cspell/dynamic-import/-/dynamic-import-8.0.0.tgz"; - sha512 = "HNkCepopgiEGuI1QGA6ob4+ayvoSMxvAqetLxP0u1sZzc50LH2DEWwotcNrpVdzZOtERHvIBcGaQKIBEx8pPRQ=="; + url = "https://registry.npmjs.org/@cspell/dynamic-import/-/dynamic-import-8.3.2.tgz"; + sha512 = "4t0xM5luA3yQhar2xWvYK4wQSDB2r0u8XkpzzJqd57MnJXd7uIAxI0awGUrDXukadRaCo0tDIlMUBemH48SNVg=="; }; }; - "@cspell/strong-weak-map-8.0.0" = { + "@cspell/strong-weak-map-8.3.2" = { name = "_at_cspell_slash_strong-weak-map"; packageName = "@cspell/strong-weak-map"; - version = "8.0.0"; + version = "8.3.2"; src = fetchurl { - url = "https://registry.npmjs.org/@cspell/strong-weak-map/-/strong-weak-map-8.0.0.tgz"; - sha512 = "fRlqPSdpdub52vFtulDgLPzGPGe75I04ScId1zOO9ABP7/ro8VmaG//m1k7hsPkm6h7FG4jWympoA3aXDAcXaA=="; + url = "https://registry.npmjs.org/@cspell/strong-weak-map/-/strong-weak-map-8.3.2.tgz"; + sha512 = "Mte/2000ap278kRYOUhiGWI7MNr1+A7WSWJmlcdP4CAH5SO20sZI3/cyZLjJJEyapdhK5vaP1L5J9sUcVDHd3A=="; }; }; "@cspotcode/source-map-support-0.8.1" = { @@ -4279,112 +4207,112 @@ let sha512 = 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"_at_electron-forge_slash_plugin-base"; packageName = "@electron-forge/plugin-base"; - version = "7.1.0"; + version = "7.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/@electron-forge/plugin-base/-/plugin-base-7.1.0.tgz"; - sha512 = "DhCAWclTwfPZThrMTYOXPTnPn7q0TSNSTcIOfHcRCC0VJGFnp5zPYHIV4IV2RLKt0uLSMxrE+JvVjphTKm6HZQ=="; + url = "https://registry.npmjs.org/@electron-forge/plugin-base/-/plugin-base-7.2.0.tgz"; + sha512 = "c/pQK36BMBMKiemO68g1ZQOCXBA93x/aeX3lIXwK5bKVuaGt16Unfmby5Q7iIvY+/KsBuLYGkAder8HDN+4Nbw=="; }; }; - "@electron-forge/publisher-base-7.1.0" = { + "@electron-forge/publisher-base-7.2.0" = { name = "_at_electron-forge_slash_publisher-base"; packageName = "@electron-forge/publisher-base"; - version = "7.1.0"; + version = "7.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/@electron-forge/publisher-base/-/publisher-base-7.1.0.tgz"; - sha512 = "CsYeWGK7Pu+9E44e95AvQa79VI4/ECdK9Ptw+Y9zVTGA+wuuhf65aOLvhpu3mQuMjpFovdrIjls3pSWzxTquOA=="; + url = "https://registry.npmjs.org/@electron-forge/publisher-base/-/publisher-base-7.2.0.tgz"; + sha512 = "c0pwcQeMZi0S4iLlgA3pqm6ZdW2u7Ea4Ynat04Gw7su5GLtbrKRgYSL36ZRhzz7sgm4372niI0k91KaH5KToHg=="; }; }; - "@electron-forge/shared-types-7.1.0" = { + "@electron-forge/shared-types-7.2.0" = { name = "_at_electron-forge_slash_shared-types"; packageName = "@electron-forge/shared-types"; - version = "7.1.0"; + version = "7.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/@electron-forge/shared-types/-/shared-types-7.1.0.tgz"; - sha512 = "uKCrWrgNCwwZB1DUBwo4/YyqLQNL55/X9xWhOT1dyw8W1wQ/bxD33F73FYNdmoL6qgIywWGNRLdQ4e1YaSxnvg=="; + url = "https://registry.npmjs.org/@electron-forge/shared-types/-/shared-types-7.2.0.tgz"; + sha512 = "d8i+pwPwBnlmFTRkq7QfaoRS9LywfyjDdHqQZuArFbL6NLAEbZ52irFiAE3NSLf4STew/BA6IK9sTPz3KRmvQw=="; }; }; - "@electron-forge/template-base-7.1.0" = { + "@electron-forge/template-base-7.2.0" = { name = "_at_electron-forge_slash_template-base"; packageName = 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= "3.4.1"; src = fetchurl { - url = "https://registry.npmjs.org/@electron/rebuild/-/rebuild-3.3.0.tgz"; - sha512 = "S1vgpzIOS1wCJmsYjdLz97MTUV6UTLcMk/HE3w90HYtVxvW+PQdwxLbgsrECX2bysqcnmM5a0K6mXj/gwVgYtQ=="; + url = "https://registry.npmjs.org/@electron/rebuild/-/rebuild-3.4.1.tgz"; + sha512 = "iMKb6KJgKcdURbejs0j2GLEmrY8uY4rg1ESThXx9sFTgdWb8UOfJuTqW6LIEtcoY8FrbFqDmJrkWc4tBpdStXw=="; }; }; - "@electron/universal-1.5.1" = { + "@electron/universal-2.0.1" = { name = "_at_electron_slash_universal"; packageName = "@electron/universal"; - version = "1.5.1"; + version = "2.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/@electron/universal/-/universal-2.0.1.tgz"; + sha512 = "fKpv9kg4SPmt+hY7SVBnIYULE9QJl8L3sCfcBsnqbJwwBwAeTLokJ9TRt9y7bK0JAzIW2y78TVVjvnQEms/yyA=="; + }; + }; + "@electron/windows-sign-1.0.0" = { + name = "_at_electron_slash_windows-sign"; + packageName = "@electron/windows-sign"; + version = "1.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/@electron/universal/-/universal-1.5.1.tgz"; - sha512 = "kbgXxyEauPJiQQUNG2VgUeyfQNFk6hBF11ISN2PNI6agUgPl55pv4eQmaqHzTAzchBvqZ2tQuRVaPStGf0mxGw=="; + url = "https://registry.npmjs.org/@electron/windows-sign/-/windows-sign-1.0.0.tgz"; + sha512 = "sdkQYAR/TQCEyYgz2jMbusL/ljdj6qA7vyIm/S9HICMAitXhXROFHUOLLgiORj1uiaf2EOB2U33DatGubUuZaQ=="; }; }; "@emmetio/abbreviation-2.3.3" = { @@ -4504,6 +4441,15 @@ let sha512 = "LXV7QsWJxRuMYvKbiznh+U1ilIop3g2TeKRzUxOG5X3YITc8JyyTa90BmLwqqv0YnX4v32CSlG+vsziZp9dMvA=="; }; }; + "@esbuild/aix-ppc64-0.19.11" = { + name = "_at_esbuild_slash_aix-ppc64"; + packageName = "@esbuild/aix-ppc64"; + version = "0.19.11"; + src = fetchurl { + url = "https://registry.npmjs.org/@esbuild/aix-ppc64/-/aix-ppc64-0.19.11.tgz"; + sha512 = "FnzU0LyE3ySQk7UntJO4+qIiQgI7KoODnZg5xzXIrFJlKd2P2gwHsHY4927xj9y5PJmJSzULiUCWmv7iWnNa7g=="; + }; + }; "@esbuild/android-arm-0.17.19" = { name = "_at_esbuild_slash_android-arm"; packageName = "@esbuild/android-arm"; @@ -4522,13 +4468,13 @@ let sha512 = "fyi7TDI/ijKKNZTUJAQqiG5T7YjJXgnzkURqmGj13C6dCqckZBLdl4h7bkhHt/t0WP+zO9/zwroDvANaOqO5Sw=="; }; }; - "@esbuild/android-arm-0.19.7" = { + "@esbuild/android-arm-0.19.11" = { name = "_at_esbuild_slash_android-arm"; packageName = "@esbuild/android-arm"; - version = "0.19.7"; + version = "0.19.11"; src = fetchurl { - url = "https://registry.npmjs.org/@esbuild/android-arm/-/android-arm-0.19.7.tgz"; - sha512 = "YGSPnndkcLo4PmVl2tKatEn+0mlVMr3yEpOOT0BeMria87PhvoJb5dg5f5Ft9fbCVgtAz4pWMzZVgSEGpDAlww=="; + url = "https://registry.npmjs.org/@esbuild/android-arm/-/android-arm-0.19.11.tgz"; + sha512 = "5OVapq0ClabvKvQ58Bws8+wkLCV+Rxg7tUVbo9xu034Nm536QTII4YzhaFriQ7rMrorfnFKUsArD2lqKbFY4vw=="; }; }; "@esbuild/android-arm64-0.17.19" = { @@ -4549,13 +4495,13 @@ let sha512 = "Nz4rJcchGDtENV0eMKUNa6L12zz2zBDXuhj/Vjh18zGqB44Bi7MBMSXjgunJgjRhCmKOjnPuZp4Mb6OKqtMHLQ=="; }; }; - "@esbuild/android-arm64-0.19.7" = { + "@esbuild/android-arm64-0.19.11" = { name = "_at_esbuild_slash_android-arm64"; packageName = "@esbuild/android-arm64"; - version = "0.19.7"; + version = "0.19.11"; src = fetchurl { - url = "https://registry.npmjs.org/@esbuild/android-arm64/-/android-arm64-0.19.7.tgz"; - sha512 = "YEDcw5IT7hW3sFKZBkCAQaOCJQLONVcD4bOyTXMZz5fr66pTHnAet46XAtbXAkJRfIn2YVhdC6R9g4xa27jQ1w=="; + url = "https://registry.npmjs.org/@esbuild/android-arm64/-/android-arm64-0.19.11.tgz"; + sha512 = "aiu7K/5JnLj//KOnOfEZ0D90obUkRzDMyqd/wNAUQ34m4YUPVhRZpnqKV9uqDGxT7cToSDnIHsGooyIczu9T+Q=="; }; }; "@esbuild/android-x64-0.17.19" = { @@ -4576,13 +4522,13 @@ let sha512 = "8GDdlePJA8D6zlZYJV/jnrRAi6rOiNaCC/JclcXpB+KIuvfBN4owLtgzY2bsxnx666XjJx2kDPUmnTtR8qKQUg=="; }; }; - "@esbuild/android-x64-0.19.7" = { + "@esbuild/android-x64-0.19.11" = { name = "_at_esbuild_slash_android-x64"; packageName = "@esbuild/android-x64"; - version = "0.19.7"; + version = "0.19.11"; src = fetchurl { - url = "https://registry.npmjs.org/@esbuild/android-x64/-/android-x64-0.19.7.tgz"; - sha512 = "jhINx8DEjz68cChFvM72YzrqfwJuFbfvSxZAk4bebpngGfNNRm+zRl4rtT9oAX6N9b6gBcFaJHFew5Blf6CvUw=="; + url = "https://registry.npmjs.org/@esbuild/android-x64/-/android-x64-0.19.11.tgz"; + sha512 = "eccxjlfGw43WYoY9QgB82SgGgDbibcqyDTlk3l3C0jOVHKxrjdc9CTwDUQd0vkvYg5um0OH+GpxYvp39r+IPOg=="; }; }; "@esbuild/darwin-arm64-0.17.19" = { @@ -4603,13 +4549,13 @@ let sha512 = "bxRHW5kHU38zS2lPTPOyuyTm+S+eobPUnTNkdJEfAddYgEcll4xkT8DB9d2008DtTbl7uJag2HuE5NZAZgnNEA=="; }; }; - "@esbuild/darwin-arm64-0.19.7" = { + "@esbuild/darwin-arm64-0.19.11" = { name = "_at_esbuild_slash_darwin-arm64"; packageName = "@esbuild/darwin-arm64"; - version = "0.19.7"; + version = "0.19.11"; src = fetchurl { - url = "https://registry.npmjs.org/@esbuild/darwin-arm64/-/darwin-arm64-0.19.7.tgz"; - sha512 = "dr81gbmWN//3ZnBIm6YNCl4p3pjnabg1/ZVOgz2fJoUO1a3mq9WQ/1iuEluMs7mCL+Zwv7AY5e3g1hjXqQZ9Iw=="; + url = "https://registry.npmjs.org/@esbuild/darwin-arm64/-/darwin-arm64-0.19.11.tgz"; + sha512 = "ETp87DRWuSt9KdDVkqSoKoLFHYTrkyz2+65fj9nfXsaV3bMhTCjtQfw3y+um88vGRKRiF7erPrh/ZuIdLUIVxQ=="; }; }; "@esbuild/darwin-x64-0.17.19" = { @@ -4630,13 +4576,13 @@ let sha512 = "pc5gxlMDxzm513qPGbCbDukOdsGtKhfxD1zJKXjCCcU7ju50O7MeAZ8c4krSJcOIJGFR+qx21yMMVYwiQvyTyQ=="; }; }; - "@esbuild/darwin-x64-0.19.7" = { + "@esbuild/darwin-x64-0.19.11" = { name = "_at_esbuild_slash_darwin-x64"; packageName = "@esbuild/darwin-x64"; - version = "0.19.7"; + version = "0.19.11"; src = fetchurl { - url = "https://registry.npmjs.org/@esbuild/darwin-x64/-/darwin-x64-0.19.7.tgz"; - sha512 = "Lc0q5HouGlzQEwLkgEKnWcSazqr9l9OdV2HhVasWJzLKeOt0PLhHaUHuzb8s/UIya38DJDoUm74GToZ6Wc7NGQ=="; + url = "https://registry.npmjs.org/@esbuild/darwin-x64/-/darwin-x64-0.19.11.tgz"; + sha512 = "fkFUiS6IUK9WYUO/+22omwetaSNl5/A8giXvQlcinLIjVkxwTLSktbF5f/kJMftM2MJp9+fXqZ5ezS7+SALp4g=="; }; }; "@esbuild/freebsd-arm64-0.17.19" = { @@ -4657,13 +4603,13 @@ let sha512 = "yqDQHy4QHevpMAaxhhIwYPMv1NECwOvIpGCZkECn8w2WFHXjEwrBn3CeNIYsibZ/iZEUemj++M26W3cNR5h+Tw=="; }; }; - "@esbuild/freebsd-arm64-0.19.7" = { + "@esbuild/freebsd-arm64-0.19.11" = { name = "_at_esbuild_slash_freebsd-arm64"; packageName = "@esbuild/freebsd-arm64"; - version = "0.19.7"; + version = "0.19.11"; src = fetchurl { - url = "https://registry.npmjs.org/@esbuild/freebsd-arm64/-/freebsd-arm64-0.19.7.tgz"; - sha512 = "+y2YsUr0CxDFF7GWiegWjGtTUF6gac2zFasfFkRJPkMAuMy9O7+2EH550VlqVdpEEchWMynkdhC9ZjtnMiHImQ=="; + url = "https://registry.npmjs.org/@esbuild/freebsd-arm64/-/freebsd-arm64-0.19.11.tgz"; + sha512 = "lhoSp5K6bxKRNdXUtHoNc5HhbXVCS8V0iZmDvyWvYq9S5WSfTIHU2UGjcGt7UeS6iEYp9eeymIl5mJBn0yiuxA=="; }; }; "@esbuild/freebsd-x64-0.17.19" = { @@ -4684,13 +4630,13 @@ let sha512 = "tgWRPPuQsd3RmBZwarGVHZQvtzfEBOreNuxEMKFcd5DaDn2PbBxfwLcj4+aenoh7ctXcbXmOQIn8HI6mCSw5MQ=="; }; }; - "@esbuild/freebsd-x64-0.19.7" = { + "@esbuild/freebsd-x64-0.19.11" = { name = "_at_esbuild_slash_freebsd-x64"; packageName = "@esbuild/freebsd-x64"; - version = "0.19.7"; + version = "0.19.11"; src = fetchurl { - url = "https://registry.npmjs.org/@esbuild/freebsd-x64/-/freebsd-x64-0.19.7.tgz"; - sha512 = "CdXOxIbIzPJmJhrpmJTLx+o35NoiKBIgOvmvT+jeSadYiWJn0vFKsl+0bSG/5lwjNHoIDEyMYc/GAPR9jxusTA=="; + url = "https://registry.npmjs.org/@esbuild/freebsd-x64/-/freebsd-x64-0.19.11.tgz"; + sha512 = "JkUqn44AffGXitVI6/AbQdoYAq0TEullFdqcMY/PCUZ36xJ9ZJRtQabzMA+Vi7r78+25ZIBosLTOKnUXBSi1Kw=="; }; }; "@esbuild/linux-arm-0.17.19" = { @@ -4711,13 +4657,13 @@ let sha512 = "/5bHkMWnq1EgKr1V+Ybz3s1hWXok7mDFUMQ4cG10AfW3wL02PSZi5kFpYKrptDsgb2WAJIvRcDm+qIvXf/apvg=="; }; }; - "@esbuild/linux-arm-0.19.7" = { + "@esbuild/linux-arm-0.19.11" = { name = "_at_esbuild_slash_linux-arm"; packageName = "@esbuild/linux-arm"; - version = "0.19.7"; + version = "0.19.11"; src = fetchurl { - url = "https://registry.npmjs.org/@esbuild/linux-arm/-/linux-arm-0.19.7.tgz"; - sha512 = "Y+SCmWxsJOdQtjcBxoacn/pGW9HDZpwsoof0ttL+2vGcHokFlfqV666JpfLCSP2xLxFpF1lj7T3Ox3sr95YXww=="; + url = "https://registry.npmjs.org/@esbuild/linux-arm/-/linux-arm-0.19.11.tgz"; + sha512 = "3CRkr9+vCV2XJbjwgzjPtO8T0SZUmRZla+UL1jw+XqHZPkPgZiyWvbDvl9rqAN8Zl7qJF0O/9ycMtjU67HN9/Q=="; }; }; "@esbuild/linux-arm64-0.17.19" = { @@ -4738,13 +4684,13 @@ let sha512 = "2YbscF+UL7SQAVIpnWvYwM+3LskyDmPhe31pE7/aoTMFKKzIc9lLbyGUpmmb8a8AixOL61sQ/mFh3jEjHYFvdA=="; }; }; - "@esbuild/linux-arm64-0.19.7" = { + "@esbuild/linux-arm64-0.19.11" = { name = "_at_esbuild_slash_linux-arm64"; packageName = "@esbuild/linux-arm64"; - version = "0.19.7"; + version = "0.19.11"; src = fetchurl { - url = "https://registry.npmjs.org/@esbuild/linux-arm64/-/linux-arm64-0.19.7.tgz"; - sha512 = "inHqdOVCkUhHNvuQPT1oCB7cWz9qQ/Cz46xmVe0b7UXcuIJU3166aqSunsqkgSGMtUCWOZw3+KMwI6otINuC9g=="; + url = "https://registry.npmjs.org/@esbuild/linux-arm64/-/linux-arm64-0.19.11.tgz"; + sha512 = "LneLg3ypEeveBSMuoa0kwMpCGmpu8XQUh+mL8XXwoYZ6Be2qBnVtcDI5azSvh7vioMDhoJFZzp9GWp9IWpYoUg=="; }; }; "@esbuild/linux-ia32-0.17.19" = { @@ -4765,13 +4711,13 @@ let sha512 = "P4etWwq6IsReT0E1KHU40bOnzMHoH73aXp96Fs8TIT6z9Hu8G6+0SHSw9i2isWrD2nbx2qo5yUqACgdfVGx7TA=="; }; }; - "@esbuild/linux-ia32-0.19.7" = { + "@esbuild/linux-ia32-0.19.11" = { name = "_at_esbuild_slash_linux-ia32"; packageName = "@esbuild/linux-ia32"; - version = "0.19.7"; + version = "0.19.11"; src = fetchurl { - url = "https://registry.npmjs.org/@esbuild/linux-ia32/-/linux-ia32-0.19.7.tgz"; - sha512 = "2BbiL7nLS5ZO96bxTQkdO0euGZIUQEUXMTrqLxKUmk/Y5pmrWU84f+CMJpM8+EHaBPfFSPnomEaQiG/+Gmh61g=="; + url = "https://registry.npmjs.org/@esbuild/linux-ia32/-/linux-ia32-0.19.11.tgz"; + sha512 = "caHy++CsD8Bgq2V5CodbJjFPEiDPq8JJmBdeyZ8GWVQMjRD0sU548nNdwPNvKjVpamYYVL40AORekgfIubwHoA=="; }; }; "@esbuild/linux-loong64-0.17.19" = { @@ -4792,13 +4738,13 @@ let sha512 = "nXW8nqBTrOpDLPgPY9uV+/1DjxoQ7DoB2N8eocyq8I9XuqJ7BiAMDMf9n1xZM9TgW0J8zrquIb/A7s3BJv7rjg=="; }; }; - "@esbuild/linux-loong64-0.19.7" = { + "@esbuild/linux-loong64-0.19.11" = { name = "_at_esbuild_slash_linux-loong64"; packageName = "@esbuild/linux-loong64"; - version = "0.19.7"; + version = "0.19.11"; src = fetchurl { - url = "https://registry.npmjs.org/@esbuild/linux-loong64/-/linux-loong64-0.19.7.tgz"; - sha512 = "BVFQla72KXv3yyTFCQXF7MORvpTo4uTA8FVFgmwVrqbB/4DsBFWilUm1i2Oq6zN36DOZKSVUTb16jbjedhfSHw=="; + url = "https://registry.npmjs.org/@esbuild/linux-loong64/-/linux-loong64-0.19.11.tgz"; + sha512 = "ppZSSLVpPrwHccvC6nQVZaSHlFsvCQyjnvirnVjbKSHuE5N24Yl8F3UwYUUR1UEPaFObGD2tSvVKbvR+uT1Nrg=="; }; }; "@esbuild/linux-mips64el-0.17.19" = { @@ -4819,13 +4765,13 @@ let sha512 = "d5NeaXZcHp8PzYy5VnXV3VSd2D328Zb+9dEq5HE6bw6+N86JVPExrA6O68OPwobntbNJ0pzCpUFZTo3w0GyetQ=="; }; }; - "@esbuild/linux-mips64el-0.19.7" = { + "@esbuild/linux-mips64el-0.19.11" = { name = "_at_esbuild_slash_linux-mips64el"; packageName = "@esbuild/linux-mips64el"; - version = "0.19.7"; + version = "0.19.11"; src = fetchurl { - url = "https://registry.npmjs.org/@esbuild/linux-mips64el/-/linux-mips64el-0.19.7.tgz"; - sha512 = "DzAYckIaK+pS31Q/rGpvUKu7M+5/t+jI+cdleDgUwbU7KdG2eC3SUbZHlo6Q4P1CfVKZ1lUERRFP8+q0ob9i2w=="; + url = "https://registry.npmjs.org/@esbuild/linux-mips64el/-/linux-mips64el-0.19.11.tgz"; + sha512 = "B5x9j0OgjG+v1dF2DkH34lr+7Gmv0kzX6/V0afF41FkPMMqaQ77pH7CrhWeR22aEeHKaeZVtZ6yFwlxOKPVFyg=="; }; }; "@esbuild/linux-ppc64-0.17.19" = { @@ -4846,13 +4792,13 @@ let sha512 = "WHPyeScRNcmANnLQkq6AfyXRFr5D6N2sKgkFo2FqguP44Nw2eyDlbTdZwd9GYk98DZG9QItIiTlFLHJHjxP3FA=="; }; }; - "@esbuild/linux-ppc64-0.19.7" = { + "@esbuild/linux-ppc64-0.19.11" = { name = "_at_esbuild_slash_linux-ppc64"; packageName = "@esbuild/linux-ppc64"; - version = "0.19.7"; + version = "0.19.11"; src = fetchurl { - url = "https://registry.npmjs.org/@esbuild/linux-ppc64/-/linux-ppc64-0.19.7.tgz"; - sha512 = "JQ1p0SmUteNdUaaiRtyS59GkkfTW0Edo+e0O2sihnY4FoZLz5glpWUQEKMSzMhA430ctkylkS7+vn8ziuhUugQ=="; + url = "https://registry.npmjs.org/@esbuild/linux-ppc64/-/linux-ppc64-0.19.11.tgz"; + sha512 = "MHrZYLeCG8vXblMetWyttkdVRjQlQUb/oMgBNurVEnhj4YWOr4G5lmBfZjHYQHHN0g6yDmCAQRR8MUHldvvRDA=="; }; }; "@esbuild/linux-riscv64-0.17.19" = { @@ -4873,13 +4819,13 @@ let sha512 = "WSxo6h5ecI5XH34KC7w5veNnKkju3zBRLEQNY7mv5mtBmrP/MjNBCAlsM2u5hDBlS3NGcTQpoBvRzqBcRtpq1A=="; }; }; - "@esbuild/linux-riscv64-0.19.7" = { + "@esbuild/linux-riscv64-0.19.11" = { name = "_at_esbuild_slash_linux-riscv64"; packageName = "@esbuild/linux-riscv64"; - version = "0.19.7"; + version = "0.19.11"; src = fetchurl { - url = "https://registry.npmjs.org/@esbuild/linux-riscv64/-/linux-riscv64-0.19.7.tgz"; - sha512 = "xGwVJ7eGhkprY/nB7L7MXysHduqjpzUl40+XoYDGC4UPLbnG+gsyS1wQPJ9lFPcxYAaDXbdRXd1ACs9AE9lxuw=="; + url = "https://registry.npmjs.org/@esbuild/linux-riscv64/-/linux-riscv64-0.19.11.tgz"; + sha512 = "f3DY++t94uVg141dozDu4CCUkYW+09rWtaWfnb3bqe4w5NqmZd6nPVBm+qbz7WaHZCoqXqHz5p6CM6qv3qnSSQ=="; }; }; "@esbuild/linux-s390x-0.17.19" = { @@ -4900,13 +4846,13 @@ let sha512 = "+8231GMs3mAEth6Ja1iK0a1sQ3ohfcpzpRLH8uuc5/KVDFneH6jtAJLFGafpzpMRO6DzJ6AvXKze9LfFMrIHVQ=="; }; }; - "@esbuild/linux-s390x-0.19.7" = { + "@esbuild/linux-s390x-0.19.11" = { name = "_at_esbuild_slash_linux-s390x"; packageName = "@esbuild/linux-s390x"; - version = "0.19.7"; + version = "0.19.11"; src = fetchurl { - url = "https://registry.npmjs.org/@esbuild/linux-s390x/-/linux-s390x-0.19.7.tgz"; - sha512 = "U8Rhki5PVU0L0nvk+E8FjkV8r4Lh4hVEb9duR6Zl21eIEYEwXz8RScj4LZWA2i3V70V4UHVgiqMpszXvG0Yqhg=="; + url = "https://registry.npmjs.org/@esbuild/linux-s390x/-/linux-s390x-0.19.11.tgz"; + sha512 = "A5xdUoyWJHMMlcSMcPGVLzYzpcY8QP1RtYzX5/bS4dvjBGVxdhuiYyFwp7z74ocV7WDc0n1harxmpq2ePOjI0Q=="; }; }; "@esbuild/linux-x64-0.17.19" = { @@ -4927,13 +4873,13 @@ let sha512 = 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version = "0.19.7"; + version = "0.19.11"; src = fetchurl { - url = "https://registry.npmjs.org/@esbuild/netbsd-x64/-/netbsd-x64-0.19.7.tgz"; - sha512 = "/yfjlsYmT1O3cum3J6cmGG16Fd5tqKMcg5D+sBYLaOQExheAJhqr8xOAEIuLo8JYkevmjM5zFD9rVs3VBcsjtQ=="; + url = "https://registry.npmjs.org/@esbuild/netbsd-x64/-/netbsd-x64-0.19.11.tgz"; + sha512 = "13jvrQZJc3P230OhU8xgwUnDeuC/9egsjTkXN49b3GcS5BKvJqZn86aGM8W9pd14Kd+u7HuFBMVtrNGhh6fHEQ=="; }; }; "@esbuild/openbsd-x64-0.17.19" = { @@ -4981,13 +4927,13 @@ let sha512 = "e5e4YSsuQfX4cxcygw/UCPIEP6wbIL+se3sxPdCiMbFLBWu0eiZOJ7WoD+ptCLrmjZBK1Wk7I6D/I3NglUGOxg=="; }; }; - "@esbuild/openbsd-x64-0.19.7" = { + "@esbuild/openbsd-x64-0.19.11" = { name = "_at_esbuild_slash_openbsd-x64"; packageName = "@esbuild/openbsd-x64"; - version = "0.19.7"; + version = "0.19.11"; src = fetchurl { - url = "https://registry.npmjs.org/@esbuild/openbsd-x64/-/openbsd-x64-0.19.7.tgz"; - sha512 = 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"Hf+Sad9nVwvtxy4DXCZQqLpgmRTQqyFyhT3bZ4F2XlJCjxGmRFF0Shwn9rzhOYRB61w9VMXUkxlBy56dk9JJiQ=="; }; }; "@esbuild/win32-arm64-0.17.19" = { @@ -5035,13 +4981,13 @@ let sha512 = "ddYFR6ItYgoaq4v4JmQQaAI5s7npztfV4Ag6NrhiaW0RrnOXqBkgwZLofVTlq1daVTQNhtI5oieTvkRPfZrePg=="; }; }; - "@esbuild/win32-arm64-0.19.7" = { + "@esbuild/win32-arm64-0.19.11" = { name = "_at_esbuild_slash_win32-arm64"; packageName = "@esbuild/win32-arm64"; - version = "0.19.7"; + version = "0.19.11"; src = fetchurl { - url = "https://registry.npmjs.org/@esbuild/win32-arm64/-/win32-arm64-0.19.7.tgz"; - sha512 = "ZA0KSYti5w5toax5FpmfcAgu3ZNJxYSRm0AW/Dao5up0YV1hDVof1NvwLomjEN+3/GMtaWDI+CIyJOMTRSTdMw=="; + url = "https://registry.npmjs.org/@esbuild/win32-arm64/-/win32-arm64-0.19.11.tgz"; + sha512 = "0P58Sbi0LctOMOQbpEOvOL44Ne0sqbS0XWHMvvrg6NE5jQ1xguCSSw9jQeUk2lfrXYsKDdOe6K+oZiwKPilYPQ=="; }; }; "@esbuild/win32-ia32-0.17.19" = { @@ -5062,13 +5008,13 @@ let sha512 = 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version = "0.19.7"; + version = "0.19.11"; src = fetchurl { - url = "https://registry.npmjs.org/@esbuild/win32-x64/-/win32-x64-0.19.7.tgz"; - sha512 = "gRaP2sk6hc98N734luX4VpF318l3w+ofrtTu9j5L8EQXF+FzQKV6alCOHMVoJJHvVK/mGbwBXfOL1HETQu9IGQ=="; + url = "https://registry.npmjs.org/@esbuild/win32-x64/-/win32-x64-0.19.11.tgz"; + sha512 = "vfkhltrjCAb603XaFhqhAF4LGDi2M4OrCRrFusyQ+iTLQ/o60QQXxc9cZC/FFpihBI9N1Grn6SMKVJ4KP7Fuiw=="; }; }; "@eslint-community/eslint-utils-4.4.0" = { @@ -5125,13 +5071,13 @@ let sha512 = "J6KFFz5QCYUJq3pf0mjEcCJVERbzv71PUIDczuh9JkwGEzced6CO5ADLHB1rbf/+oPBtoPfMYNOpGDzCANlbXw=="; }; }; - "@eslint/eslintrc-2.1.3" = { + "@eslint/eslintrc-2.1.4" = { name = "_at_eslint_slash_eslintrc"; packageName = "@eslint/eslintrc"; - version = "2.1.3"; + version = "2.1.4"; src = fetchurl { - url = "https://registry.npmjs.org/@eslint/eslintrc/-/eslintrc-2.1.3.tgz"; - sha512 = "yZzuIG+jnVu6hNSzFEN07e8BxF3uAzYtQb6uDkaYZLo6oYZDCq454c5kB8zxnzfCYyP4MIuyBn10L0DqwujTmA=="; + url = "https://registry.npmjs.org/@eslint/eslintrc/-/eslintrc-2.1.4.tgz"; + sha512 = "269Z39MS6wVJtsoUl10L60WdkhJVdPG24Q4eZTH3nnF6lpvSShEK3wQjDX9JRWAUPvPh7COouPpU9IrqaZFvtQ=="; }; }; "@eslint/js-8.44.0" = { @@ -5143,13 +5089,13 @@ let sha512 = "Ag+9YM4ocKQx9AarydN0KY2j0ErMHNIocPDrVo8zAE44xLTjEtz81OdR68/cydGtk6m6jDb5Za3r2useMzYmSw=="; }; }; - "@eslint/js-8.54.0" = { + "@eslint/js-8.56.0" = { name = "_at_eslint_slash_js"; packageName = "@eslint/js"; - version = "8.54.0"; + version = "8.56.0"; src = fetchurl { - url = "https://registry.npmjs.org/@eslint/js/-/js-8.54.0.tgz"; - sha512 = "ut5V+D+fOoWPgGGNj83GGjnntO39xDy6DWxO0wb7Jp3DcMX0TfIqdzHF85VTQkerdyGmuuMD9AKAo5KiNlf/AQ=="; + url = "https://registry.npmjs.org/@eslint/js/-/js-8.56.0.tgz"; + sha512 = "gMsVel9D7f2HLkBma9VbtzZRehRogVRfbr++f06nL2vnCGCNlzOD+/MUov/F4p8myyAHspEhVobgjpX64q5m6A=="; }; }; "@ethereumjs/rlp-4.0.1" = { @@ -5260,13 +5206,13 @@ let sha512 = "4e7hzPj50mQIlsrzOH6XZ36O094mPfPTIDIH4yv49bWNMc7GFLTofB/lcT+QyxiLaJuC0Wlk9yOLB8DIqmtwug=="; }; }; - "@expo/config-8.4.0" = { + "@expo/config-8.5.3" = { name = "_at_expo_slash_config"; packageName = "@expo/config"; - version = "8.4.0"; + version = "8.5.3"; src = fetchurl { - url = "https://registry.npmjs.org/@expo/config/-/config-8.4.0.tgz"; - sha512 = "m3LkkONHrGsoFASyi3VuxJON/McRwMOtU9tw9PC/XEhRy1HfRALxdqTMl0W5X79ra7kCXd8H5EVTbTl9pvU+bw=="; + url = "https://registry.npmjs.org/@expo/config/-/config-8.5.3.tgz"; + sha512 = "wMX96aLo7AVl7voEkGXwEI2hPoMMHgxyq0CMC51I2jOnYHqB4HkG71YeXBPZR3zLnY33CNjVT+hF5CAPfiiliw=="; }; }; "@expo/config-plugins-4.1.5" = { @@ -5296,13 +5242,13 @@ let sha512 = "TItGwmKH1GDjA5GlMkXo1A8pqeqppSK40aSVRVQaGZraUj+nuvtpWxNgEWZxWFumiatP2ocWwyWVjfmH+rJY6g=="; }; }; - "@expo/config-plugins-7.6.0" = { + "@expo/config-plugins-7.8.3" = { name = "_at_expo_slash_config-plugins"; packageName = "@expo/config-plugins"; - version = "7.6.0"; + version = "7.8.3"; src = fetchurl { - url = "https://registry.npmjs.org/@expo/config-plugins/-/config-plugins-7.6.0.tgz"; - sha512 = "2YX5xQhxSWVFS2BzMo8SVJPGuc6R/Ci2o4oeMT5F/JvdUut56pBCZietkkAxX9gOcIYMMTYFJllMn/Ecb5v4yQ=="; + url = "https://registry.npmjs.org/@expo/config-plugins/-/config-plugins-7.8.3.tgz"; + sha512 = "ix0pNLZgR29mNI5pcNRjuEClvioVjWCNWDiAxgZd1BXEVn7d2bqztDKQj03KU88e0KM7zKt9AbmIqn5aANZ8pg=="; }; }; "@expo/config-types-45.0.0" = { @@ -5332,13 +5278,13 @@ let sha512 = "8eyREVi+K2acnMBe/rTIu1dOfyR2+AMnTLHlut+YpMV9OZPdeKV0Bs9BxAewGqBA2slslbQ9N39IS2CuTKpXkA=="; }; }; - "@expo/config-types-50.0.0-alpha.3" = { + "@expo/config-types-50.0.0" = { name = "_at_expo_slash_config-types"; packageName = "@expo/config-types"; - version = "50.0.0-alpha.3"; + version = "50.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/@expo/config-types/-/config-types-50.0.0-alpha.3.tgz"; - sha512 = "dzJ49GOqFxcJX8WMn4zNc7ffEQEgJ93EfhwQZ6BHqkCgvnnkoBl8sO0a8Y+UzLCD1nGOV6j3vLvzLyRkD6buaA=="; + url = "https://registry.npmjs.org/@expo/config-types/-/config-types-50.0.0.tgz"; + sha512 = "0kkhIwXRT6EdFDwn+zTg9R2MZIAEYGn1MVkyRohAd+C9cXOb5RA8WLQi7vuxKF9m1SMtNAUrf0pO+ENK0+/KSw=="; }; }; "@expo/dev-server-0.2.0" = { @@ -5368,31 +5314,31 @@ let sha512 = "ghUVhNJQOCTdQckSGTHctNp/0jzvVoMMkVh+6SHn+TZj8sU15U/npXIDt8NtQp0HedlPaCgkVdMu8Sacne0aEA=="; }; }; - "@expo/eas-build-job-1.0.48" = { + "@expo/eas-build-job-1.0.50" = { name = "_at_expo_slash_eas-build-job"; packageName = "@expo/eas-build-job"; - version = "1.0.48"; + version = "1.0.50"; src = fetchurl { - url = "https://registry.npmjs.org/@expo/eas-build-job/-/eas-build-job-1.0.48.tgz"; - sha512 = "44N9fKrur7xOtY8DnHcFEzJTPenOBUkfpNous4xziG8u58oXvlraiNaTSi++4EpFfsBS3U+jQAW9UMlJqfu8WA=="; + url = "https://registry.npmjs.org/@expo/eas-build-job/-/eas-build-job-1.0.50.tgz"; + sha512 = "mG+U5hag4OLVI51Crbc1lxIeWgMBv9ZUm1eL/AkoA04NJFtVpwTCVqdpMsRWsXLFM8Poy/ktN9UOma06eXHWHQ=="; }; }; - "@expo/eas-json-5.7.0" = { + "@expo/eas-json-5.9.3" = { name = "_at_expo_slash_eas-json"; packageName = "@expo/eas-json"; - version = "5.7.0"; + version = "5.9.3"; src = fetchurl { - url = "https://registry.npmjs.org/@expo/eas-json/-/eas-json-5.7.0.tgz"; - sha512 = "JNg1vXZzQPxGmvq3BoP40b6k49KWaysNSLpJhGFGy5oHhIC7BOI5P0yTCSdluxhd0Rq5oLc03tnYbqoFGWUT8g=="; + url = "https://registry.npmjs.org/@expo/eas-json/-/eas-json-5.9.3.tgz"; + sha512 = "IxAudZQixCHNgMtMW1f3l/Ty7VH9jXKgQ5Gts1wQvMdwkWFR7ZxA6F7U8fFFdnIrYY0j46TkZj3gcYTfhtdELA=="; }; }; - "@expo/fingerprint-0.4.1" = { + "@expo/fingerprint-0.6.0" = { name = "_at_expo_slash_fingerprint"; packageName = "@expo/fingerprint"; - version = "0.4.1"; + version = "0.6.0"; src = fetchurl { - url = "https://registry.npmjs.org/@expo/fingerprint/-/fingerprint-0.4.1.tgz"; - sha512 = "OjL/moP9IV5fV0oQc/cOcNNTW/FlwK4fUHtgeka/Fk4A7L4evpXOt9hfQgDtY6Ig0QHINAYvKpWrfCkPxEh2/Q=="; + url = "https://registry.npmjs.org/@expo/fingerprint/-/fingerprint-0.6.0.tgz"; + sha512 = 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"@graphql-tools/graphql-file-loader-6.2.7" = { @@ -5944,13 +5908,13 @@ let sha512 = "FlQC50VELwRxoWUbJMMMs5gG0Dl8BaQYMrXUHTsxwqR7UmksUYnysC21rdousvs6jVZ7pf4unZfZFtBjz+8Edg=="; }; }; - "@graphql-tools/load-8.0.0" = { + "@graphql-tools/load-8.0.1" = { name = "_at_graphql-tools_slash_load"; packageName = "@graphql-tools/load"; - version = "8.0.0"; + version = "8.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/@graphql-tools/load/-/load-8.0.0.tgz"; - sha512 = "Cy874bQJH0FP2Az7ELPM49iDzOljQmK1PPH6IuxsWzLSTxwTqd8dXA09dcVZrI7/LsN26heTY2R8q2aiiv0GxQ=="; + url = "https://registry.npmjs.org/@graphql-tools/load/-/load-8.0.1.tgz"; + sha512 = "qSMsKngJhDqRbuWyo3NvakEFqFL6+eSjy8ooJ1o5qYD26N7dqXkKzIMycQsX7rBK19hOuINAUSaRcVWH6hTccw=="; }; }; "@graphql-tools/merge-6.2.17" = { @@ -5980,13 +5944,13 @@ let sha512 = "XbrHAaj8yDuINph+sAfuq3QCZ/tKblrTLOpirK0+CAgNlZUCHs0Fa+xtMUURgwCVThLle1AF7svJCxFizygLsw=="; }; }; - "@graphql-tools/merge-9.0.0" = { + "@graphql-tools/merge-9.0.1" = { name = 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"https://registry.npmjs.org/@nx/devkit/-/devkit-17.2.8.tgz"; + sha512 = "6LtiQihtZwqz4hSrtT5cCG5XMCWppG6/B8c1kNksg97JuomELlWyUyVF+sxmeERkcLYFaKPTZytP0L3dmCFXaw=="; }; }; "@oclif/color-1.0.13" = { @@ -7537,15 +7519,6 @@ let sha512 = "cE3qfHWv8hGRCP31j7fIS7BfCflm/BNZ2HNqHexH+fDrdF2f1D5S8VmXWLC77ffv3oDvWyvE9AZeR0RfmHCCaA=="; }; }; - "@oclif/core-1.23.2" = { - name = "_at_oclif_slash_core"; - packageName = "@oclif/core"; - version = "1.23.2"; - src = fetchurl { - url = "https://registry.npmjs.org/@oclif/core/-/core-1.23.2.tgz"; - sha512 = "NdaOaUDTRc6g1yTkOAKiEVOiQhc5CNcWNXa0QF4IS4yTjNqp4DOzgtF9Dwe585nPEKzSbTBiz1wyLOa4qIHSRQ=="; - }; - }; "@oclif/core-1.26.2" = { name = "_at_oclif_slash_core"; packageName = "@oclif/core"; @@ -7618,13 +7591,13 @@ let sha512 = "l04iSd0xoh/16TGVpXb81Gg3z7tlQGrEup16BrVLsZBK6SEYpYHRJZnM32BwZrHI97ZSFfuSwVlzoo6HdsaK8A=="; }; }; - "@oclif/plugin-autocomplete-1.3.10" = { + "@oclif/plugin-autocomplete-2.3.10" = { name = "_at_oclif_slash_plugin-autocomplete"; packageName = "@oclif/plugin-autocomplete"; - version = "1.3.10"; + version = "2.3.10"; src = fetchurl { - url = "https://registry.npmjs.org/@oclif/plugin-autocomplete/-/plugin-autocomplete-1.3.10.tgz"; - sha512 = "oQl7ZqXhXJUOH26mDPcqcMGmcdIoK/uQPSpUBrfLa1iaQ30slTs0T7KOzg+vwKuPqIIF1nTCPuH67lE8GvUPTw=="; + url = "https://registry.npmjs.org/@oclif/plugin-autocomplete/-/plugin-autocomplete-2.3.10.tgz"; + sha512 = "Ow1AR8WtjzlyCtiWWPgzMyT8SbcDJFr47009riLioHa+MHX2BCDtVn2DVnN/E6b9JlPV5ptQpjefoRSNWBesmg=="; }; }; "@oclif/plugin-commands-2.2.24" = { @@ -8059,13 +8032,13 @@ let sha512 = "I6LrZvl1FF97FQXPR0iieWQmKnGxYtMbWA1GrAXnLUR+B1Hn2m8KqQNEIlZAucyv00GBgpWkpllmULmZfG8P3g=="; }; }; - "@opentelemetry/core-1.18.1" = { + "@opentelemetry/core-1.19.0" = { name = "_at_opentelemetry_slash_core"; packageName = "@opentelemetry/core"; - version = "1.18.1"; + version = "1.19.0"; src = fetchurl { - url = "https://registry.npmjs.org/@opentelemetry/core/-/core-1.18.1.tgz"; - sha512 = 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{ + "@smithy/util-config-provider-2.1.0" = { name = "_at_smithy_slash_util-config-provider"; packageName = "@smithy/util-config-provider"; - version = "2.0.0"; + version = "2.1.0"; src = fetchurl { - url = "https://registry.npmjs.org/@smithy/util-config-provider/-/util-config-provider-2.0.0.tgz"; - sha512 = "xCQ6UapcIWKxXHEU4Mcs2s7LcFQRiU3XEluM2WcCjjBtQkUN71Tb+ydGmJFPxMUrW/GWMgQEEGipLym4XG0jZg=="; + url = "https://registry.npmjs.org/@smithy/util-config-provider/-/util-config-provider-2.1.0.tgz"; + sha512 = "S6V0JvvhQgFSGLcJeT1CBsaTR03MM8qTuxMH9WPCCddlSo2W0V5jIHimHtIQALMLEDPGQ0ROSRr/dU0O+mxiQg=="; }; }; - "@smithy/util-defaults-mode-browser-2.0.19" = { + "@smithy/util-defaults-mode-browser-2.0.24" = { name = "_at_smithy_slash_util-defaults-mode-browser"; packageName = "@smithy/util-defaults-mode-browser"; - version = "2.0.19"; + version = "2.0.24"; src = fetchurl { - url = "https://registry.npmjs.org/@smithy/util-defaults-mode-browser/-/util-defaults-mode-browser-2.0.19.tgz"; - sha512 = 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"@smithy/util-endpoints-1.0.4" = { + "@smithy/util-endpoints-1.0.8" = { name = "_at_smithy_slash_util-endpoints"; packageName = "@smithy/util-endpoints"; - version = "1.0.4"; + version = "1.0.8"; src = fetchurl { - url = "https://registry.npmjs.org/@smithy/util-endpoints/-/util-endpoints-1.0.4.tgz"; - sha512 = "FPry8j1xye5yzrdnf4xKUXVnkQErxdN7bUIaqC0OFoGsv2NfD9b2UUMuZSSt+pr9a8XWAqj0HoyVNUfPiZ/PvQ=="; + url = "https://registry.npmjs.org/@smithy/util-endpoints/-/util-endpoints-1.0.8.tgz"; + sha512 = "l8zVuyZZ61IzZBYp5NWvsAhbaAjYkt0xg9R4xUASkg5SEeTT2meHOJwJHctKMFUXe4QZbn9fR2MaBYjP2119+w=="; }; }; "@smithy/util-hex-encoding-2.0.0" = { @@ -10237,31 +10354,31 @@ let sha512 = "c5xY+NUnFqG6d7HFh1IFfrm3mGl29lC+vF+geHv4ToiuJCBmIfzx6IeHLg+OgRdPFKDXIw6pvi+p3CsscaMcMA=="; }; }; - "@smithy/util-middleware-2.0.6" = { + "@smithy/util-middleware-2.0.9" = { name = "_at_smithy_slash_util-middleware"; packageName = "@smithy/util-middleware"; - version = "2.0.6"; + version = "2.0.9"; src = fetchurl { - url = "https://registry.npmjs.org/@smithy/util-middleware/-/util-middleware-2.0.6.tgz"; - sha512 = "7W4uuwBvSLgKoLC1x4LfeArCVcbuHdtVaC4g30kKsD1erfICyQ45+tFhhs/dZNeQg+w392fhunCm/+oCcb6BSA=="; + url = "https://registry.npmjs.org/@smithy/util-middleware/-/util-middleware-2.0.9.tgz"; + sha512 = "PnCnBJ07noMX1lMDTEefmxSlusWJUiLfrme++MfK5TD0xz8NYmakgoXy5zkF/16zKGmiwOeKAztWT/Vjk1KRIQ=="; }; }; - "@smithy/util-retry-2.0.6" = { + "@smithy/util-retry-2.0.9" = { name = "_at_smithy_slash_util-retry"; packageName = "@smithy/util-retry"; - version = "2.0.6"; + version = "2.0.9"; src = fetchurl { - url = "https://registry.npmjs.org/@smithy/util-retry/-/util-retry-2.0.6.tgz"; - sha512 = "PSO41FofOBmyhPQJwBQJ6mVlaD7Sp9Uff9aBbnfBJ9eqXOE/obrqQjn0PNdkfdvViiPXl49BINfnGcFtSP4kYw=="; + url = "https://registry.npmjs.org/@smithy/util-retry/-/util-retry-2.0.9.tgz"; + sha512 = "46BFWe9RqB6g7f4mxm3W3HlqknqQQmWHKlhoqSFZuGNuiDU5KqmpebMbvC3tjTlUkqn4xa2Z7s3Hwb0HNs5scw=="; }; }; - "@smithy/util-stream-2.0.20" = { + "@smithy/util-stream-2.0.24" = { name = "_at_smithy_slash_util-stream"; packageName = "@smithy/util-stream"; - version = "2.0.20"; + version = "2.0.24"; src = fetchurl { - url = "https://registry.npmjs.org/@smithy/util-stream/-/util-stream-2.0.20.tgz"; - sha512 = "tT8VASuD8jJu0yjHEMTCPt1o5E3FVzgdsxK6FQLAjXKqVv5V8InCnc0EOsYrijgspbfDqdAJg7r0o2sySfcHVg=="; + url = "https://registry.npmjs.org/@smithy/util-stream/-/util-stream-2.0.24.tgz"; + sha512 = "hRpbcRrOxDriMVmbya+Mv77VZVupxRAsfxVDKS54XuiURhdiwCUXJP0X1iJhHinuUf6n8pBF0MkG9C8VooMnWw=="; }; }; "@smithy/util-uri-escape-2.0.0" = { @@ -10282,13 +10399,13 @@ let sha512 = "qOiVORSPm6Ce4/Yu6hbSgNHABLP2VMv8QOC3tTDNHHlWY19pPyc++fBTbZPtx6egPXi4HQxKDnMxVxpbtX2GoA=="; }; }; - "@smithy/util-waiter-2.0.13" = { + "@smithy/util-waiter-2.0.16" = { name = "_at_smithy_slash_util-waiter"; packageName = "@smithy/util-waiter"; - version = "2.0.13"; + version = "2.0.16"; src = fetchurl { - url = 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}; - "axios-1.6.2" = { + "axios-1.6.5" = { name = "axios"; packageName = "axios"; - version = "1.6.2"; + version = "1.6.5"; src = fetchurl { - url = "https://registry.npmjs.org/axios/-/axios-1.6.2.tgz"; - sha512 = "7i24Ri4pmDRfJTR7LDBhsOTtcm+9kjX5WiY1X3wIisx6G9So3pfMkEiU7emUBe46oceVImccTEM3k6C5dbVW8A=="; + url = "https://registry.npmjs.org/axios/-/axios-1.6.5.tgz"; + sha512 = "Ii012v05KEVuUoFWmMW/UQv9aRIc3ZwkWDcM+h5Il8izZCtRVpDUfwpoFf7eOtajT3QiGR4yDUx7lPqHJULgbg=="; }; }; "axobject-query-3.2.1" = { @@ -15970,31 +16447,31 @@ let sha512 = "MlX10UDheRr3lb3P0WcaIdtCSRlxdQsB1sBqL7W0raF070bGl1HQQq5K3T2vf2XAYie+ww+5AKC/WrkjRO2knA=="; }; }; - "babel-plugin-polyfill-corejs2-0.4.6" = { + "babel-plugin-polyfill-corejs2-0.4.7" = { name = "babel-plugin-polyfill-corejs2"; packageName = "babel-plugin-polyfill-corejs2"; - version = "0.4.6"; + version = "0.4.7"; src = fetchurl { - url = "https://registry.npmjs.org/babel-plugin-polyfill-corejs2/-/babel-plugin-polyfill-corejs2-0.4.6.tgz"; - sha512 = 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"bonjour-service-1.1.1" = { + "bonjour-service-1.2.0" = { name = "bonjour-service"; packageName = "bonjour-service"; - version = "1.1.1"; + version = "1.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/bonjour-service/-/bonjour-service-1.1.1.tgz"; - sha512 = "Z/5lQRMOG9k7W+FkeGTNjh7htqn/2LMnfOvBZ8pynNZCM9MwkQkI3zeI4oz09uWdcgmgHugVvBqxGg4VQJ5PCg=="; + url = "https://registry.npmjs.org/bonjour-service/-/bonjour-service-1.2.0.tgz"; + sha512 = "xdzMA6JGckxyJzZByjEWRcfKmDxXaGXZWVftah3FkCqdlePNS9DjHSUN5zkP4oEfz/t0EXXlro88EIhzwMB4zA=="; }; }; "boolbase-1.0.0" = { @@ -17122,22 +17608,22 @@ let sha512 = "qhAVI1+Av2X7qelOfAIYwXONood6XlZE/fXaBSmW/T5SzLAmCgzi+eiWE7fUvbHaeNBQH13UftjpXxsfLkMpgw=="; }; }; - "browser-sync-client-2.29.3" = { + "browser-sync-client-3.0.2" = { name = "browser-sync-client"; packageName = "browser-sync-client"; - version = "2.29.3"; + version = "3.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/browser-sync-client/-/browser-sync-client-2.29.3.tgz"; - 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"https://registry.npmjs.org/cacache/-/cacache-18.0.0.tgz"; - sha512 = "I7mVOPl3PUCeRub1U8YoGz2Lqv9WOBpobZ8RyWFXmReuILz+3OAyTa5oH3QPdtKZD7N0Yk00aLfzn0qvp8dZ1w=="; + url = "https://registry.npmjs.org/cacache/-/cacache-18.0.2.tgz"; + sha512 = "r3NU8h/P+4lVUHfeRw1dtgQYar3DZMm4/cm2bZgOvrFC/su7budSOeqh52VJIC4U4iG1WWwV6vRW0znqBvxNuw=="; }; }; "cache-base-1.0.1" = { @@ -17806,15 +18292,6 @@ let sha512 = "WF0LihfemtesFcJgO7xfOoOcnWzY/QHR4qeDqV44jPU3HTI54+LnfXK3SA27AVVGCdZFgjjFFaqUA9Jx7dMJZA=="; }; }; - "cachedir-2.4.0" = { - name = "cachedir"; - packageName = "cachedir"; - version = "2.4.0"; - src = fetchurl { - url = "https://registry.npmjs.org/cachedir/-/cachedir-2.4.0.tgz"; - sha512 = "9EtFOZR8g22CL7BWjJ9BUx1+A/djkofnyW3aOXZORNW2kxoUpx2h+uN2cOqwPmFhnpVmxg+KW2OjOSgChTEvsQ=="; - }; - }; "caching-transform-4.0.0" = { name = "caching-transform"; packageName = "caching-transform"; @@ -18076,13 +18553,22 @@ let sha512 = 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}; "canvas-2.11.2" = { @@ -18211,31 +18697,31 @@ let sha512 = "eyrF0jiFpY+3drT6383f1qhkbGsLSifNAjA61IUjZjmLCWjItY6LB9ft9YhoDgwfmclB2zhu51Lc7+95b8NRAg=="; }; }; - "cdk8s-2.68.10" = { + "cdk8s-2.68.23" = { name = "cdk8s"; packageName = "cdk8s"; - version = "2.68.10"; + version = "2.68.23"; src = fetchurl { - url = "https://registry.npmjs.org/cdk8s/-/cdk8s-2.68.10.tgz"; - sha512 = "y0ZwGvWln5y0hc/8NmB/GBjy4AIbvXhztfnncLhhPz9FWy1B6VjEi3LRLT3OrPwtONWKOmWe6d5KwideevBsrw=="; + url = "https://registry.npmjs.org/cdk8s/-/cdk8s-2.68.23.tgz"; + sha512 = "ckLBVynhm7waLVd7iJXQoR3R9j57dc9bbTKuiUlHVBKa/YOVpVITHtMKUX0HnuQHFiKICTc1ZFVt7mm9CkJBtw=="; }; }; - "cdk8s-plus-25-2.22.64" = { + "cdk8s-plus-25-2.22.68" = { name = "cdk8s-plus-25"; packageName = "cdk8s-plus-25"; - version = "2.22.64"; + version = "2.22.68"; src = fetchurl { - url = "https://registry.npmjs.org/cdk8s-plus-25/-/cdk8s-plus-25-2.22.64.tgz"; - sha512 = 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"4.4.0"; + src = fetchurl { + url = "https://registry.npmjs.org/chai/-/chai-4.4.0.tgz"; + sha512 = "x9cHNq1uvkCdU+5xTkNh5WtgD4e4yDFCsp9jVc7N7qVeKeftv3gO/ZrviX5d+3ZfxdYnZXZYujjRInu1RogU6A=="; + }; + }; "chainsaw-0.1.0" = { name = "chainsaw"; packageName = "chainsaw"; @@ -18499,6 +18994,15 @@ let sha512 = "/Bw+avucqqZ7PjKCVDod1QDGyZjo7Ht2701pdgcpTXzK5jI73/OUh3VR+m18jNUoJx5DSOUv0AxELZF7FYtcDA=="; }; }; + "check-error-1.0.3" = { + name = "check-error"; + packageName = "check-error"; + version = "1.0.3"; + src = fetchurl { + url = "https://registry.npmjs.org/check-error/-/check-error-1.0.3.tgz"; + sha512 = "iKEoDYaRmd1mxM90a2OEfWhjsjPpYPuQ+lMYsoxB126+t8fw7ySEO48nmDg5COTjxDI65/Y2OWpeEHk3ZOe8zg=="; + }; + }; "cheerio-0.17.0" = { name = "cheerio"; packageName = "cheerio"; @@ -18571,33 +19075,6 @@ let sha512 = "9v9kG0LvzrlcungtnJtpGNxY+fzECQKhK4EGJX2vByejiMX84MFNQw4UxPJl3bFbTMw+Dfs37XaIkCwTZfLh4g=="; }; }; - "chevrotain-11.0.3" = { - name = "chevrotain"; - packageName = "chevrotain"; - version = "11.0.3"; - src = fetchurl { - url = "https://registry.npmjs.org/chevrotain/-/chevrotain-11.0.3.tgz"; - sha512 = "ci2iJH6LeIkvP9eJW6gpueU8cnZhv85ELY8w8WiFtNjMHA5ad6pQLaJo9mEly/9qUyCpvqX8/POVUTf18/HFdw=="; - }; - }; - "child-process-ext-2.1.1" = { - name = "child-process-ext"; - packageName = "child-process-ext"; - version = "2.1.1"; - src = fetchurl { - url = "https://registry.npmjs.org/child-process-ext/-/child-process-ext-2.1.1.tgz"; - sha512 = "0UQ55f51JBkOFa+fvR76ywRzxiPwQS3Xe8oe5bZRphpv+dIMeerW5Zn5e4cUy4COJwVtJyU0R79RMnw+aCqmGA=="; - }; - }; - "child-process-ext-3.0.2" = { - name = "child-process-ext"; - packageName = "child-process-ext"; - version = "3.0.2"; - src = fetchurl { - url = "https://registry.npmjs.org/child-process-ext/-/child-process-ext-3.0.2.tgz"; - sha512 = "oBePsLbQpTJFxzwyCvs9yWWF0OEM6vGGepHwt1stqmX7QQqOuDc8j2ywdvAs9Tvi44TT7d9ackqhR4Q10l1u8w=="; - }; - }; "chokidar-1.7.0" = { name = "chokidar"; packageName = "chokidar"; @@ -18679,6 +19156,15 @@ let sha512 = 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"chromium-bidi"; + packageName = "chromium-bidi"; + version = "0.4.9"; + src = fetchurl { + url = "https://registry.npmjs.org/chromium-bidi/-/chromium-bidi-0.4.9.tgz"; + sha512 = "u3DC6XwgLCA9QJ5ak1voPslCmacQdulZNCPsI3qNXxSnEcZS7DFIbww+5RM2bznMEje7cc0oydavRLRvOIZtHw=="; + }; + }; "chunk-store-stream-4.3.0" = { name = "chunk-store-stream"; packageName = "chunk-store-stream"; @@ -18814,13 +19318,13 @@ let sha512 = "EJUDT7nDVFDvaQgAo2G/PJvxmp1o/c6iXLbswsBbUFXi1Nr+AjA2cKmfbKDMjMvzEe75g3P6JkaDDAKk96A85A=="; }; }; - "clean-css-5.3.2" = { + "clean-css-5.3.3" = { name = "clean-css"; packageName = "clean-css"; - version = "5.3.2"; + version = "5.3.3"; src = fetchurl { - url = "https://registry.npmjs.org/clean-css/-/clean-css-5.3.2.tgz"; - sha512 = "JVJbM+f3d3Q704rF4bqQ5UUyTtuJ0JRKNbTKVEeujCCBoMdkEi+V+e8oktO9qGQNSvHrFTM6JZRXrUvGR1czww=="; + url = "https://registry.npmjs.org/clean-css/-/clean-css-5.3.3.tgz"; + sha512 = "D5J+kHaVb/wKSFcyyV75uCn8fiY4sV38XJoe4CUyGQ+mOU/fMVYUdH1hJC+CJQ5uY3EnW27SbJYS4X8BiLrAFg=="; }; }; "clean-regexp-1.0.0" = { @@ -18922,15 +19426,6 @@ let sha512 = "/lzGpEWL/8PfI0BmBOPRwp0c/wFNX1RdUML3jK/RcSBA9T8mZDdQpqYBKtCFTOfQbwPqWEOpjqW+Fnayc0969g=="; }; }; - "cli-color-2.0.3" = { - name = "cli-color"; - packageName = "cli-color"; - version = "2.0.3"; - src = fetchurl { - url = "https://registry.npmjs.org/cli-color/-/cli-color-2.0.3.tgz"; - sha512 = "OkoZnxyC4ERN3zLzZaY9Emb7f/MhBOIpePv0Ycok0fJYT+Ouo00UBEIwsVsr0yoow++n5YWlSUgST9GKhNHiRQ=="; - }; - }; "cli-cursor-1.0.2" = { name = "cli-cursor"; packageName = "cli-cursor"; @@ -18985,15 +19480,6 @@ let sha512 = "tRkV3HJ1ASwm19THiiLIXLO7Im7wlTuKnvkYaTkyoAPefqjNg7W7DHKUlGRxy9vxDvbyCYQkQozvptuMkGCg8A=="; }; }; - "cli-progress-footer-2.3.2" = { - name = "cli-progress-footer"; - packageName = "cli-progress-footer"; - version = "2.3.2"; - src = fetchurl { - url = "https://registry.npmjs.org/cli-progress-footer/-/cli-progress-footer-2.3.2.tgz"; - sha512 = "uzHGgkKdeA9Kr57eyH1W5HGiNShP8fV1ETq04HDNM1Un6ShXbHhwi/H8LNV9L1fQXKjEw0q5FUkEVNuZ+yZdSw=="; - }; - }; "cli-spinners-1.3.1" = { name = "cli-spinners"; packageName = "cli-spinners"; @@ -19021,22 +19507,13 @@ let sha512 = "qu3pN8Y3qHNgE2AFweciB1IfMnmZ/fsNTEE+NOFjmGB2F/7rLhnhzppvpCnN4FovtP26k8lHyy9ptEbNwWFLzw=="; }; }; - "cli-spinners-2.9.1" = { + "cli-spinners-2.9.2" = { name = "cli-spinners"; packageName = "cli-spinners"; - version = "2.9.1"; - src = fetchurl { - url = "https://registry.npmjs.org/cli-spinners/-/cli-spinners-2.9.1.tgz"; - sha512 = "jHgecW0pxkonBJdrKsqxgRX9AcG+u/5k0Q7WPDfi8AogLAdwxEkyYYNWwZ5GvVFoFx2uiY1eNcSK00fh+1+FyQ=="; - }; - }; - "cli-sprintf-format-1.1.1" = { - name = "cli-sprintf-format"; - packageName = "cli-sprintf-format"; - version = "1.1.1"; + version = "2.9.2"; src = fetchurl { - url = "https://registry.npmjs.org/cli-sprintf-format/-/cli-sprintf-format-1.1.1.tgz"; - sha512 = "BbEjY9BEdA6wagVwTqPvmAwGB24U93rQPBFZUT8lNCDxXzre5LFHQUTJc70czjgUomVg8u8R5kW8oY9DYRFNeg=="; + url = "https://registry.npmjs.org/cli-spinners/-/cli-spinners-2.9.2.tgz"; + sha512 = "ywqV+5MmyL4E7ybXgKys4DugZbX0FC6LnwrhjuykIjnK9k8OQacQ7axGKnjDXWNhns0xot3bZI5h55H8yo9cJg=="; }; }; "cli-table-0.3.11" = { @@ -19543,13 +20020,13 @@ let sha512 = "7qJWqItLA8/VPVlKJlFXU+NBlo/qyfs39aJcuMT/2ere32ZqvF5OSxgdM5xOfJJ7O429gg2HM47y8v9P+9wrNw=="; }; }; - "codemaker-1.92.0" = { + "codemaker-1.93.0" = { name = "codemaker"; packageName = "codemaker"; - version = "1.92.0"; + version = "1.93.0"; src = fetchurl { - url = "https://registry.npmjs.org/codemaker/-/codemaker-1.92.0.tgz"; - sha512 = "h9LW/YFYMAXHvv4aHNxVfawza/8GHL0Nw0zFpqdURXsjRlsCtG+SzqRvYLOJoFqxzZ9+rkXJf8fODImC6WHa8g=="; + url = "https://registry.npmjs.org/codemaker/-/codemaker-1.93.0.tgz"; + sha512 = "n9AdncxhGti20YhA7HI2oAYhELh/qlDnW9JIAYQW9iULXdeaKtsxHgvcwBCltpieOcQrq10bt+sUawBs62vxLg=="; }; }; "coffeescript-2.7.0" = { @@ -20065,6 +20542,15 @@ let sha512 = "W6Af2Iw1z4CB7q4uU4hv646dW9GQuBM+YpC0UvUCWSD8w90SJjp+ujJuXaEMtAXBtSqGfMPuFOVn4/+FlaqfBA=="; }; }; + "compare-versions-6.0.0-rc.1" = { + name = "compare-versions"; + packageName = "compare-versions"; + version = "6.0.0-rc.1"; + src = fetchurl { + url = "https://registry.npmjs.org/compare-versions/-/compare-versions-6.0.0-rc.1.tgz"; + sha512 = "cFhkjbGY1jLFWIV7KegECbfuyYPxSGvgGkdkfM+ibboQDoPwg2FRHm5BSNTOApiauRBzJIQH7qvOJs2sW5ueKQ=="; + }; + }; "compare-versions-6.1.0" = { name = "compare-versions"; packageName = "compare-versions"; @@ -20146,6 +20632,15 @@ let sha512 = "D3uMHtGc/fcO1Gt1/L7i1e33VOvD4A9hfQLP+6ewd+BvG/gQ84Yh4oftEhAdjSMgBgwGL+jsppT7JYNpo6MHHg=="; }; }; + "compress-commons-5.0.1" = { + name = "compress-commons"; + packageName = "compress-commons"; + version = "5.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/compress-commons/-/compress-commons-5.0.1.tgz"; + sha512 = "MPh//1cERdLtqwO3pOFLeXtpuai0Y2WCd5AhtKxznqM7WtaMYaOEMSgn45d9D10sIHSfIKE603HlOp8OPGrvag=="; + }; + }; "compressible-2.0.18" = { name = "compressible"; packageName = "compressible"; @@ -20858,22 +21353,22 @@ let sha512 = "Kb2wC0fvsWfQrgk8HU5lW6U/Lcs8+9aaYcy4ZFc6DDlo4nZ7n70dEgE5rtR0oG6ufKDUnrwfWL1mXR5ljDatrQ=="; }; }; - "core-js-3.33.3" = { + "core-js-3.35.0" = { name = "core-js"; packageName = "core-js"; - version = "3.33.3"; + version = "3.35.0"; src = fetchurl { - url = "https://registry.npmjs.org/core-js/-/core-js-3.33.3.tgz"; - sha512 = "lo0kOocUlLKmm6kv/FswQL8zbkH7mVsLJ/FULClOhv8WRVmKLVcs6XPNQAzstfeJTCHMyButEwG+z1kHxHoDZw=="; + url = "https://registry.npmjs.org/core-js/-/core-js-3.35.0.tgz"; + sha512 = "ntakECeqg81KqMueeGJ79Q5ZgQNR+6eaE8sxGCx62zMbAIj65q+uYvatToew3m6eAGdU4gNZwpZ34NMe4GYswg=="; }; }; - "core-js-compat-3.33.3" = { + "core-js-compat-3.35.0" = { name = "core-js-compat"; packageName = "core-js-compat"; - version = "3.33.3"; + version = "3.35.0"; src = fetchurl { - url = "https://registry.npmjs.org/core-js-compat/-/core-js-compat-3.33.3.tgz"; - sha512 = "cNzGqFsh3Ot+529GIXacjTJ7kegdt5fPXxCBVS1G0iaZpuo/tBz399ymceLJveQhFFZ8qThHiP3fzuoQjKN2ow=="; + url = "https://registry.npmjs.org/core-js-compat/-/core-js-compat-3.35.0.tgz"; + sha512 = "5blwFAddknKeNgsjBzilkdQ0+YK8L1PfqPYq40NOYMYFSS38qj+hpTcLLWwpIwA2A5bje/x5jmVn2tzUMg9IVw=="; }; }; "core-util-is-1.0.2" = { @@ -20957,15 +21452,6 @@ let sha512 = "AdmX6xUzdNASswsFtmwSt7Vj8po9IuqXm0UXz7QKPuEUmPB4XyjGfaAr2PSuELMwkRMVH1EpIkX5bTZGRB3eCA=="; }; }; - "cosmiconfig-8.0.0" = { - name = "cosmiconfig"; - packageName = "cosmiconfig"; - version = "8.0.0"; - src = fetchurl { - url = "https://registry.npmjs.org/cosmiconfig/-/cosmiconfig-8.0.0.tgz"; - sha512 = "da1EafcpH6b/TD8vDRaWV7xFINlHlF6zKsGwS1TsuVJTZRkquaS5HTMq7uq6h31619QjbsYl21gVDOm32KM1vQ=="; - }; - }; "cosmiconfig-8.3.6" = { name = "cosmiconfig"; packageName = "cosmiconfig"; @@ -21056,6 +21542,15 @@ let sha512 = "NT7w2JVU7DFroFdYkeq8cywxrgjPHWkdX1wjpRQXPX5Asews3tA+Ght6lddQO5Mkumffp3X7GEqku3epj2toIw=="; }; }; + "crc32-stream-5.0.0" = { + name = "crc32-stream"; + packageName = "crc32-stream"; + version = "5.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/crc32-stream/-/crc32-stream-5.0.0.tgz"; + sha512 = "B0EPa1UK+qnpBZpG+7FgPCu0J2ETLpXq09o9BkLkEAhdB6Z61Qo4pJ3JYu0c+Qi+/SAL7QThqnzS06pmSSyZaw=="; + }; + }; "create-ecdh-4.0.4" = { name = "create-ecdh"; packageName = "create-ecdh"; @@ -21074,13 +21569,13 @@ let sha512 = "gYTKKexFO3kh200H1Nit76sRwRtOY32vQd3jpAQKpLtZqyNsSQNfI4N7o3eP2wUjV35pTWKRYqFUDBvUha/Pkw=="; }; }; - "create-gatsby-3.12.3" = { + "create-gatsby-3.13.0" = { name = "create-gatsby"; packageName = "create-gatsby"; - version = "3.12.3"; + version = "3.13.0"; src = fetchurl { - url = "https://registry.npmjs.org/create-gatsby/-/create-gatsby-3.12.3.tgz"; - sha512 = "N0K/Z/MD5LMRJcBy669WpSgrn+31zBV72Lv0RHolX0fXa77Yx58HsEiLWz83j/dtciGMQfEOEHFRetUqZhOggA=="; + url = "https://registry.npmjs.org/create-gatsby/-/create-gatsby-3.13.0.tgz"; + sha512 = "LioljItQuXjGOmla7tmpaPQ452mO8FYlEzEvhF6oMy+aureMLjiYHrO1BlpNQoaRQxIPp85iMnhliy4cQwDVwg=="; }; }; "create-graphback-1.0.1" = { @@ -21182,6 +21677,15 @@ let sha512 = "lvb1SBsI0Z7GDwmuid+mU3kWVBwTVUbe7S0H52yaaAdQOXq2YktTCZdlAcNKFzE6QtRz0snpw9bNiPeOIkkQvw=="; }; }; + "cross-fetch-3.1.6" = { + name = "cross-fetch"; + packageName = "cross-fetch"; + version = "3.1.6"; + src = fetchurl { + url = "https://registry.npmjs.org/cross-fetch/-/cross-fetch-3.1.6.tgz"; + sha512 = "riRvo06crlE8HiqOwIpQhxwdOk4fOeR7FVM/wXoxchFEqMNUjvbs3bfo4OTgMEMHzppd4DxFBDbyySj8Cv781g=="; + }; + }; "cross-fetch-3.1.8" = { name = "cross-fetch"; packageName = "cross-fetch"; @@ -21191,6 +21695,15 @@ let sha512 = "cvA+JwZoU0Xq+h6WkMvAUqPEYy92Obet6UdKLfW60qn99ftItKjB5T+BkyWOFWe2pUyfQ+IJHmpOTznqk1M6Kg=="; }; }; + "cross-fetch-4.0.0" = { + name = "cross-fetch"; + packageName = "cross-fetch"; + version = "4.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/cross-fetch/-/cross-fetch-4.0.0.tgz"; + sha512 = "e4a5N8lVvuLgAWgnCrLr2PP0YyDOTHa9H/Rj54dirp61qXnNq46m82bRhNqIA5VccJtWBvPTFRV3TtvHUKPB1g=="; + }; + }; "cross-inspect-1.0.0" = { name = "cross-inspect"; packageName = "cross-inspect"; @@ -21299,6 +21812,15 @@ let sha512 = "x8dy3RnvYdlUcPOjkEHqozhiwzKNSq7GcPuXFbnyMOCHxX8V3OgIg/pYuabl2sbUPfIJaeAQB7PMOK8DFIdoRA=="; }; }; + "cspell-config-lib-8.3.2" = { + name = "cspell-config-lib"; + packageName = "cspell-config-lib"; + version = "8.3.2"; + src = fetchurl { + url = "https://registry.npmjs.org/cspell-config-lib/-/cspell-config-lib-8.3.2.tgz"; + sha512 = "Wc98XhBNLwDxnxCzMtgRJALI9a69cu3C5Gf1rGjNTKSFo9JYiQmju0Ur3z25Pkx9Sa86f+2IjvNCf33rUDSoBQ=="; + }; + }; "cspell-dict-vimlang-1.0.1" = { name = "cspell-dict-vimlang"; packageName = "cspell-dict-vimlang"; @@ -21308,22 +21830,22 @@ let sha512 = "pP2W2BvLrRKggS1fUk8qQw2FG8PhyV969dlwF3M0jAg/HH83n76H+KGdzGsmEut6VJFlJYQkd1ZZskjaeVWnrA=="; }; }; - "cspell-dictionary-8.0.0" = { + "cspell-dictionary-8.3.2" = { name = "cspell-dictionary"; packageName = "cspell-dictionary"; - version = "8.0.0"; + version = "8.3.2"; src = fetchurl { - url = "https://registry.npmjs.org/cspell-dictionary/-/cspell-dictionary-8.0.0.tgz"; - sha512 = "R/AzUj7W7F4O4fAOL8jvIiUqPYGy6jIBlDkxO9SZe/A6D2kOICZZzGSXMZ0M7OKYqxc6cioQUMKOJsLkDXfDXw=="; + url = "https://registry.npmjs.org/cspell-dictionary/-/cspell-dictionary-8.3.2.tgz"; + sha512 = "xyK95hO2BMPFxIo8zBwGml8035qOxSBdga1BMhwW/p2wDrQP8S4Cdm/54//tCDmKn6uRkFQvyOfWGaX2l8WMEg=="; }; }; - "cspell-gitignore-8.0.0" = { + "cspell-gitignore-8.3.2" = { name = "cspell-gitignore"; packageName = "cspell-gitignore"; - version = "8.0.0"; + version = "8.3.2"; src = fetchurl { - url = "https://registry.npmjs.org/cspell-gitignore/-/cspell-gitignore-8.0.0.tgz"; - sha512 = "Uv+ENdUm+EXwQuG9187lKmE1t8b2KW+6VaQHP7r01WiuhkwhfzmWA7C30iXVcwRcsMw07wKiWvMEtG6Zlzi6lQ=="; + url = "https://registry.npmjs.org/cspell-gitignore/-/cspell-gitignore-8.3.2.tgz"; + sha512 = "3Qc9P5BVvl/cg//s2s+zIMGKcoH5v7oOtRgwn4UQry8yiyo19h0tiTKkSR574FMhF5NtcShTnwIwPSIXVBPFHA=="; }; }; "cspell-glob-0.1.25" = { @@ -21335,22 +21857,22 @@ let sha512 = "/XaSHrGBpMJa+duFz3GKOWfrijrfdHT7a/XGgIcq3cymCSpOH+DPho42sl0jLI/hjM+8yv2m8aEoxRT8yVSnlg=="; }; }; - "cspell-glob-8.0.0" = { + "cspell-glob-8.3.2" = { name = "cspell-glob"; packageName = "cspell-glob"; - version = "8.0.0"; + version = "8.3.2"; src = fetchurl { - url = "https://registry.npmjs.org/cspell-glob/-/cspell-glob-8.0.0.tgz"; - sha512 = "wOkRA1OTIPhyN7a+k9Qq45yFXM+tBFi9DS5ObiLv6t6VTBIeMQpwRK0KLViHmjTgiA6eWx53Dnr+DZfxcAkcZA=="; + url = "https://registry.npmjs.org/cspell-glob/-/cspell-glob-8.3.2.tgz"; + sha512 = "KtIFxE+3l5dGEofND4/CdZffXP8XN1+XGQKxJ96lIzWsc01mkotfhxTkla6mgvfH039t7BsY/SWv0460KyGslQ=="; }; }; - "cspell-grammar-8.0.0" = { + "cspell-grammar-8.3.2" = { name = "cspell-grammar"; packageName = "cspell-grammar"; - version = "8.0.0"; + version = "8.3.2"; src = fetchurl { - url = "https://registry.npmjs.org/cspell-grammar/-/cspell-grammar-8.0.0.tgz"; - sha512 = "uxpRvbBxOih6SjFQvKTBPTA+YyqYM5UFTNTFuRnA6g6WZeg+NJaTkbQrTgXja4B2r8MJ6XU22YrKTtHNNcP7bQ=="; + url = "https://registry.npmjs.org/cspell-grammar/-/cspell-grammar-8.3.2.tgz"; + sha512 = "tYCkOmRzJe1a6/R+8QGSwG7TwTgznLPqsHtepKzLmnS4YX54VXjKRI9zMARxXDzUVfyCSVdW5MyiY/0WTNoy+A=="; }; }; "cspell-io-4.1.7" = { @@ -21362,13 +21884,13 @@ let sha512 = "V0/tUu9FnIS3v+vAvDT6NNa14Nc/zUNX8+YUUOfFAiDJJTdqefmvcWjOJBIMYBf3wIk9iWLmLbMM+bNHqr7DSQ=="; }; }; - "cspell-io-8.0.0" = { + "cspell-io-8.3.2" = { name = "cspell-io"; packageName = "cspell-io"; - version = "8.0.0"; + version = "8.3.2"; src = fetchurl { - url = "https://registry.npmjs.org/cspell-io/-/cspell-io-8.0.0.tgz"; - sha512 = "NVdVmQd7SU/nxYwWtO/6gzux/kp1Dt36zKds0+QHZhQ18JJjXduF5e+WUttqKi2oj/vvmjiG4HGFKQVDBcBz3w=="; + url = "https://registry.npmjs.org/cspell-io/-/cspell-io-8.3.2.tgz"; + sha512 = "WYpKsyBCQP0SY4gXnhW5fPuxcYchKYKG1PIXVV3ezFU4muSgW6GuLNbGuSfwv/8YNXRgFSN0e3hYH0rdBK2Aow=="; }; }; "cspell-lib-4.3.12" = { @@ -21380,13 +21902,13 @@ let sha512 = "yCCb6MoW1K8Tsr/WVEQoO4dfYhH9bCsjQayccb8MlyDaNNuWJHuX+gUGHsZSXSuChSh8PrTWKXJzs13/uM977g=="; }; }; - "cspell-lib-8.0.0" = { + "cspell-lib-8.3.2" = { name = "cspell-lib"; packageName = "cspell-lib"; - version = "8.0.0"; + version = "8.3.2"; src = fetchurl { - url = "https://registry.npmjs.org/cspell-lib/-/cspell-lib-8.0.0.tgz"; - sha512 = "X/BzUjrzHOx7YlhvSph/OlMu1RmCTnybeZvIE67d1Pd7wT1TmZhFTnmvruUhoHxWEudOEe4HjzuNL9ph6Aw+aA=="; + url = "https://registry.npmjs.org/cspell-lib/-/cspell-lib-8.3.2.tgz"; + sha512 = "wTvdaev/TyGB/ln6CVD1QbVs2D7/+QiajQ67S7yj1suLHM6YcNQQb/5sPAM8VPtj0E7PgwgPXf3bq18OtPvnFg=="; }; }; "cspell-trie-lib-4.2.8" = { @@ -21398,13 +21920,13 @@ let sha512 = "Nt3c0gxOYXIc3/yhALDukpje1BgR6guvlUKWQO2zb0r7qRWpwUw2j2YM4dWbHQeH/3Hx5ei4Braa6cMaiJ5YBw=="; }; }; - "cspell-trie-lib-8.0.0" = { + "cspell-trie-lib-8.3.2" = { name = "cspell-trie-lib"; packageName = "cspell-trie-lib"; - version = "8.0.0"; + version = "8.3.2"; src = fetchurl { - url = "https://registry.npmjs.org/cspell-trie-lib/-/cspell-trie-lib-8.0.0.tgz"; - sha512 = "0rC5e1C0uM78uuS+lC1T18EojWZyNvq4bPOPCisnwuhuWrAfCqrFrX/qDNslWk3VTOPbsEMlFj6OnIGQnfwSKg=="; + url = "https://registry.npmjs.org/cspell-trie-lib/-/cspell-trie-lib-8.3.2.tgz"; + sha512 = "8qh2FqzkLMwzlTlvO/5Z+89fhi30rrfekocpight/BmqKbE2XFJQD7wS2ml24e7q/rdHJLXVpJbY/V5mByucCA=="; }; }; "cspell-util-bundle-4.1.11" = { @@ -21434,6 +21956,15 @@ let sha512 = "rtdthzxKuyq6IzqX6jEcIzQF/YqccluefyCYheovBOLhFT/drQA9zj/UbRAa9J7C0o6EG6u3E6g+vKkay7/k3g=="; }; }; + "css-declaration-sorter-7.1.1" = { + name = "css-declaration-sorter"; + packageName = "css-declaration-sorter"; + version = "7.1.1"; + src = fetchurl { + url = "https://registry.npmjs.org/css-declaration-sorter/-/css-declaration-sorter-7.1.1.tgz"; + sha512 = "dZ3bVTEEc1vxr3Bek9vGwfB5Z6ESPULhcRvO472mfjVnj8jRcTnKO8/JTczlvxM10Myb+wBM++1MtdO76eWcaQ=="; + }; + }; "css-loader-6.8.1" = { name = "css-loader"; packageName = "css-loader"; @@ -21488,6 +22019,15 @@ let sha512 = "nwoRF1rvRRnnCqqY7updORDsuqKzqYJ28+oSMaJMMgOauh3fvwHqMS7EZpIPqK8GL+g9mKxF1vP/ZjSeNjEVHg=="; }; }; + "css-shorthand-properties-1.1.1" = { + name = "css-shorthand-properties"; + packageName = "css-shorthand-properties"; + version = "1.1.1"; + src = fetchurl { + url = "https://registry.npmjs.org/css-shorthand-properties/-/css-shorthand-properties-1.1.1.tgz"; + sha512 = "Md+Juc7M3uOdbAFwOYlTrccIZ7oCFuzrhKYQjdeUEW/sE1hv17Jp/Bws+ReOPpGVBTYCBoYo+G17V5Qo8QQ75A=="; + }; + }; "css-tree-1.1.3" = { name = "css-tree"; packageName = "css-tree"; @@ -21515,6 +22055,15 @@ let sha512 = "6Fv1DV/TYw//QF5IzQdqsNDjx/wc8TrMBZsqjL9eW01tWb7R7k/mq+/VXfJCl7SoD5emsJop9cOByJZfs8hYIw=="; }; }; + "css-value-0.0.1" = { + name = "css-value"; + packageName = "css-value"; + version = "0.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/css-value/-/css-value-0.0.1.tgz"; + sha512 = "FUV3xaJ63buRLgHrLQVlVgQnQdR4yqdLGaDu7g8CQcWjInDfM9plBTPI9FRfpahju1UBSaMckeb2/46ApS/V1Q=="; + }; + }; "css-what-1.0.0" = { name = "css-what"; packageName = "css-what"; @@ -21542,6 +22091,15 @@ let sha512 = "HTUrgRJ7r4dsZKU6GjmpfRK1O76h97Z8MfS1G0FozR+oF2kG6Vfe8JE6zwrkbxigziPHinCJ+gCPjA9EaBDtRw=="; }; }; + "css.escape-1.5.1" = { + name = "css.escape"; + packageName = "css.escape"; + version = "1.5.1"; + src = fetchurl { + url = "https://registry.npmjs.org/css.escape/-/css.escape-1.5.1.tgz"; + sha512 = "YUifsXXuknHlUsmlgyY0PKzgPOr7/FjCePfHNt0jxm83wHZi44VDMQ7/fGNkjY3/jV1MC+1CmZbaHzugyeRtpg=="; + }; + }; "cssauron-1.4.0" = { name = "cssauron"; packageName = "cssauron"; @@ -21578,13 +22136,13 @@ let sha512 = "j+BKgDcLDQA+eDifLx0EO4XSA56b7uut3BQFH+wbSaSTuGLuiyTa/wbRYthUXX8LC9mLg+WWKe8h+qJuwTAbHw=="; }; }; - "cssnano-6.0.1" = { + "cssnano-6.0.3" = { name = "cssnano"; packageName = "cssnano"; - version = "6.0.1"; + version = "6.0.3"; src = fetchurl { - url = "https://registry.npmjs.org/cssnano/-/cssnano-6.0.1.tgz"; - sha512 = "fVO1JdJ0LSdIGJq68eIxOqFpIJrZqXUsBt8fkrBcztCQqAjQD51OhZp7tc0ImcbwXD4k7ny84QTV90nZhmqbkg=="; + url = "https://registry.npmjs.org/cssnano/-/cssnano-6.0.3.tgz"; + sha512 = "MRq4CIj8pnyZpcI2qs6wswoYoDD1t0aL28n+41c1Ukcpm56m1h6mCexIHBGjfZfnTqtGSSCP4/fB1ovxgjBOiw=="; }; }; "cssnano-preset-default-5.2.14" = { @@ -21596,13 +22154,13 @@ let sha512 = "t0SFesj/ZV2OTylqQVOrFgEh5uanxbO6ZAdeCrNsUQ6fVuXwYTxJPNAGvGTxHbD68ldIJNec7PyYZDBrfDQ+6A=="; }; }; - "cssnano-preset-default-6.0.1" = { + "cssnano-preset-default-6.0.3" = { name = "cssnano-preset-default"; packageName = "cssnano-preset-default"; - version = "6.0.1"; + version = "6.0.3"; src = fetchurl { - url = "https://registry.npmjs.org/cssnano-preset-default/-/cssnano-preset-default-6.0.1.tgz"; - sha512 = "7VzyFZ5zEB1+l1nToKyrRkuaJIx0zi/1npjvZfbBwbtNTzhLtlvYraK/7/uqmX2Wb2aQtd983uuGw79jAjLSuQ=="; + url = "https://registry.npmjs.org/cssnano-preset-default/-/cssnano-preset-default-6.0.3.tgz"; + sha512 = "4y3H370aZCkT9Ev8P4SO4bZbt+AExeKhh8wTbms/X7OLDo5E7AYUUy6YPxa/uF5Grf+AJwNcCnxKhZynJ6luBA=="; }; }; "cssnano-utils-3.1.0" = { @@ -21614,13 +22172,13 @@ let sha512 = "JQNR19/YZhz4psLX/rQ9M83e3z2Wf/HdJbryzte4a3NSuafyp9w/I4U+hx5C2S9g41qlstH7DEWnZaaj83OuEA=="; }; }; - "cssnano-utils-4.0.0" = { + "cssnano-utils-4.0.1" = { name = "cssnano-utils"; packageName = "cssnano-utils"; - version = "4.0.0"; + version = "4.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/cssnano-utils/-/cssnano-utils-4.0.0.tgz"; - sha512 = "Z39TLP+1E0KUcd7LGyF4qMfu8ZufI0rDzhdyAMsa/8UyNUU8wpS0fhdBxbQbv32r64ea00h4878gommRVg2BHw=="; + url = "https://registry.npmjs.org/cssnano-utils/-/cssnano-utils-4.0.1.tgz"; + sha512 = "6qQuYDqsGoiXssZ3zct6dcMxiqfT6epy7x4R0TQJadd4LWO3sPR6JH6ZByOvVLoZ6EdwPGgd7+DR1EmX3tiXQQ=="; }; }; "csso-2.0.0" = { @@ -21695,13 +22253,22 @@ let sha512 = "N4u2ABATi3Qplzf0hWbVCdjenim8F3ojEXpBDF5hBpjzW182MjNGLqfmQ0SkSPeQ+V86ZXgeH8aXj6kayd4jgg=="; }; }; - "csstype-3.1.2" = { + "cssstyle-4.0.1" = { + name = "cssstyle"; + packageName = "cssstyle"; + version = "4.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/cssstyle/-/cssstyle-4.0.1.tgz"; + sha512 = "8ZYiJ3A/3OkDd093CBT/0UKDWry7ak4BdPTFP2+QEP7cmhouyq/Up709ASSj2cK02BbZiMgk7kYjZNS4QP5qrQ=="; + }; + }; + "csstype-3.1.3" = { name = "csstype"; packageName = "csstype"; - version = "3.1.2"; + version = "3.1.3"; src = fetchurl { - url = "https://registry.npmjs.org/csstype/-/csstype-3.1.2.tgz"; - sha512 = "I7K1Uu0MBPzaFKg4nI5Q7Vs2t+3gWWW648spaF+Rg7pI9ds18Ugn+lvg4SHczUdKlHI5LWBXyqfS8+DufyBsgQ=="; + url = "https://registry.npmjs.org/csstype/-/csstype-3.1.3.tgz"; + sha512 = "M1uQkMl8rQK/szD0LNhtqxIPLpimGm8sOBwU7lLnCpSbTyY3yeU1Vc7l4KT5zT4s/yOxHH5O7tIuuLOCnLADRw=="; }; }; "csv-0.4.6" = { @@ -21731,13 +22298,13 @@ let sha512 = "byxnDBxM1AVF3YfmsK7Smop9/usNz7gAZYSo9eYp61TGcNXraJby1rAiLyJSt1/8Iho2qaxZOtZCOvQMXogPtg=="; }; }; - "csv-parse-5.5.2" = { + "csv-parse-5.5.3" = { name = "csv-parse"; packageName = "csv-parse"; - version = "5.5.2"; + version = "5.5.3"; src = fetchurl { - url = "https://registry.npmjs.org/csv-parse/-/csv-parse-5.5.2.tgz"; - sha512 = "YRVtvdtUNXZCMyK5zd5Wty1W6dNTpGKdqQd4EQ8tl/c6KW1aMBB1Kg1ppky5FONKmEqGJ/8WjLlTNLPne4ioVA=="; + url = "https://registry.npmjs.org/csv-parse/-/csv-parse-5.5.3.tgz"; + sha512 = "v0KW6C0qlZzoGjk6u5tLmVfyZxNgPGXZsWTXshpAgKVGmGXzaVWGdlCFxNx5iuzcXT/oJN1HHM9DZKwtAtYa+A=="; }; }; "csv-stream-0.2.0" = { @@ -21839,13 +22406,13 @@ let sha512 = "w8a8nQk9YSCkMmH2wDbFqpH1XMz7l409mSvWnnG6Iu6D0Ydhvq61XASE7QIaA46FxfG2Ag524ZuGgAy2cXPfsw=="; }; }; - "cytoscape-3.27.0" = { + "cytoscape-3.28.1" = { name = "cytoscape"; packageName = "cytoscape"; - version = "3.27.0"; + version = "3.28.1"; src = fetchurl { - url = "https://registry.npmjs.org/cytoscape/-/cytoscape-3.27.0.tgz"; - sha512 = "pPZJilfX9BxESwujODz5pydeGi+FBrXq1rcaB1mfhFXXFJ9GjE6CNndAk+8jPzoXGD+16LtSS4xlYEIUiW4Abg=="; + url = "https://registry.npmjs.org/cytoscape/-/cytoscape-3.28.1.tgz"; + sha512 = "xyItz4O/4zp9/239wCcH8ZcFuuZooEeF8KHRmzjDfGdXsj3OG9MFSMA0pJE0uX3uCN/ygof6hHf4L7lst+JaDg=="; }; }; "cytoscape-cose-bilkent-4.1.0" = { @@ -22334,6 +22901,15 @@ let sha512 = "/mMTei/JXPqvFqQtfyTowxmJVwr2PVAeCcDxyFf6LhoOu/09TX2OX3kb2wzi4DMXcfj4OItwDOnhl5oziPnT6g=="; }; }; + "data-urls-5.0.0" = { + name = "data-urls"; + packageName = "data-urls"; + version = "5.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/data-urls/-/data-urls-5.0.0.tgz"; + sha512 = "ZYP5VBHshaDAiVZxjbRVcFJpc+4xGgT0bK3vzy1HLN8jTO975HEbuYzZJcHoQEY5K1a0z8YayJkyVETa08eNTg=="; + }; + }; "dataloader-2.0.0" = { name = "dataloader"; packageName = "dataloader"; @@ -22757,6 +23333,15 @@ let sha512 = "OUepMozQULMLUmhxS95Vudo0jb0UchLimi3+pQ2plj61Fcy8axbP9hbiD4Sz6DPqn6XG3kfmziVfQ1rSys5AJQ=="; }; }; + "deep-eql-4.1.3" = { + name = "deep-eql"; + packageName = "deep-eql"; + version = "4.1.3"; + src = fetchurl { + url = "https://registry.npmjs.org/deep-eql/-/deep-eql-4.1.3.tgz"; + sha512 = "WaEtAOpRA1MQ0eohqZjpGD8zdI0Ovsm8mmFhaDN8dvDZzyoUMcYDnf5Y6iu7HTXxf8JDS23qWa4a+hKCDyOPzw=="; + }; + }; "deep-equal-1.1.2" = { name = "deep-equal"; packageName = "deep-equal"; @@ -22829,6 +23414,15 @@ let sha512 = "3sUqbMEc77XqpdNO7FRyRog+eW3ph+GYCbj+rK+uYyRMuwsVy0rMiVtPn+QJlKFvWP/1PYpapqYn0Me2knFn+A=="; }; }; + "deepmerge-ts-5.1.0" = { + name = "deepmerge-ts"; + packageName = "deepmerge-ts"; + version = "5.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/deepmerge-ts/-/deepmerge-ts-5.1.0.tgz"; + sha512 = "eS8dRJOckyo9maw9Tu5O5RUi/4inFLrnoLkBe3cPfDMx3WZioXtmOew4TXQaxq7Rhl4xjDtR7c6x8nNTxOvbFw=="; + }; + }; "default-browser-4.0.0" = { name = "default-browser"; packageName = "default-browser"; @@ -22919,15 +23513,6 @@ let sha512 = "4tvttepXG1VaYGrRibk5EwJd1t4udunSOVMdLSAL6mId1ix438oPwPZMALY41FCijukO1L0twNcGsdzS7dHgDg=="; }; }; - "deferred-0.7.11" = { - name = "deferred"; - packageName = "deferred"; - version = "0.7.11"; - src = fetchurl { - url = "https://registry.npmjs.org/deferred/-/deferred-0.7.11.tgz"; - sha512 = "8eluCl/Blx4YOGwMapBvXRKxHXhA8ejDXYzEaK8+/gtcm8hRMhSLmXSqDmNUKNc/C8HNSmuyyp/hflhqDAvK2A=="; - }; - }; "define-data-property-1.1.1" = { name = "define-data-property"; packageName = "define-data-property"; @@ -23288,6 +23873,42 @@ let sha512 = "RWmIqhcFf1lRYBvNmr7qTNuyCt/7/ns2jbpp1+PalgE/rDQcBT0fioSMUpJ93irlUhC5hrg4cYqe6U+0ImW0rA=="; }; }; + "devtools-8.27.0" = { + name = "devtools"; + packageName = "devtools"; + version = "8.27.0"; + src = fetchurl { + url = "https://registry.npmjs.org/devtools/-/devtools-8.27.0.tgz"; + sha512 = "yvCfYN/TUlYoeIhW+eYnPnHLR7C0z+SBEGi0jEWk7q7Gr+/s8SvDR+GHNYRkihffkdnDwkM6Ew2nBOWqtczlug=="; + }; + }; + "devtools-protocol-0.0.1120988" = { + name = "devtools-protocol"; + packageName = "devtools-protocol"; + version = "0.0.1120988"; + src = fetchurl { + url = "https://registry.npmjs.org/devtools-protocol/-/devtools-protocol-0.0.1120988.tgz"; + sha512 = "39fCpE3Z78IaIPChJsP6Lhmkbf4dWXOmzLk/KFTdRkNk/0JymRIfUynDVRndV9HoDz8PyalK1UH21ST/ivwW5Q=="; + }; + }; + "devtools-protocol-0.0.1147663" = { + name = "devtools-protocol"; + packageName = "devtools-protocol"; + version = "0.0.1147663"; + src = fetchurl { + url = "https://registry.npmjs.org/devtools-protocol/-/devtools-protocol-0.0.1147663.tgz"; + sha512 = "hyWmRrexdhbZ1tcJUGpO95ivbRhWXz++F4Ko+n21AY5PNln2ovoJw+8ZMNDTtip+CNFQfrtLVh/w4009dXO/eQ=="; + }; + }; + "devtools-protocol-0.0.1237913" = { + name = "devtools-protocol"; + packageName = "devtools-protocol"; + version = "0.0.1237913"; + src = fetchurl { + url = "https://registry.npmjs.org/devtools-protocol/-/devtools-protocol-0.0.1237913.tgz"; + sha512 = "Pxtmz2ZIqBkpU82HaIdsvCQBG94yTC4xajrEsWx9p38QKEfBCJktSazsHkrjf9j3dVVNPhg5LR21F6KWeXpjiQ=="; + }; + }; "devtools-protocol-0.0.981744" = { name = "devtools-protocol"; packageName = 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url = "https://registry.npmjs.org/dir-compare/-/dir-compare-3.3.0.tgz"; - sha512 = "J7/et3WlGUCxjdnD3HAAzQ6nsnc0WL6DD7WcwJb7c39iH1+AWfg+9OqzJNaI6PkBwBvm1mhZNL9iY/nRiZXlPg=="; + url = "https://registry.npmjs.org/dir-compare/-/dir-compare-4.2.0.tgz"; + sha512 = "2xMCmOoMrdQIPHdsTawECdNPwlVFB9zGcz3kuhmBO6U3oU+UQjsue0i8ayLKpgBcm+hcXPMVSGUN9d+pvJ6+VQ=="; }; }; "dir-glob-2.2.2" = { @@ -23792,13 +24413,13 @@ let sha512 = "3VdM/SXBZX2omc9JF9nOPCtDaYQ67BGp5CoLpIQlO2KCAPETs8TcDHacF26jXadGbvUteZzRTeos2fhID5+ucQ=="; }; }; - "dompurify-3.0.6" = { + "dompurify-3.0.8" = { name = "dompurify"; packageName = "dompurify"; - version = "3.0.6"; + version = "3.0.8"; src = fetchurl { - url = "https://registry.npmjs.org/dompurify/-/dompurify-3.0.6.tgz"; - sha512 = "ilkD8YEnnGh1zJ240uJsW7AzE+2qpbOUYjacomn3AvJ6J4JhKGSZ2nh4wUIXPZrEPppaCLx5jFe8T89Rk8tQ7w=="; + url = "https://registry.npmjs.org/dompurify/-/dompurify-3.0.8.tgz"; + sha512 = 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}; }; "escalade-3.1.1" = { @@ -25359,13 +26025,13 @@ let sha512 = "pd8KSxiQpdYRfYa9Wufvdoct3ZPQQuVuU5O6scNgMuOMYuxvH0IGaYK0wUFjo4UYYQQCUndlXiMbnxopwvvTiw=="; }; }; - "eslint-8.54.0" = { + "eslint-8.56.0" = { name = "eslint"; packageName = "eslint"; - version = "8.54.0"; + version = "8.56.0"; src = fetchurl { - url = "https://registry.npmjs.org/eslint/-/eslint-8.54.0.tgz"; - sha512 = "NY0DfAkM8BIZDVl6PgSa1ttZbx3xHgJzSNJKYcQglem6CppHyMhRIQkBVSSMaSRnLhig3jsDbEzOjwCVt4AmmA=="; + url = "https://registry.npmjs.org/eslint/-/eslint-8.56.0.tgz"; + sha512 = "Go19xM6T9puCOWntie1/P997aXxFsOi37JIHRWI514Hc6ZnaHGKY9xFhrU65RT6CcBEzZoGG1e6Nq+DT04ZtZQ=="; }; }; "eslint-config-prettier-8.10.0" = { @@ -25431,13 +26097,13 @@ let sha512 = "oFc7Itz9Qxh2x4gNHStv3BqJq54ExXmfC+a1NjAta66IAN87Wu0R/QArgIS9qKzX3dXKPI9H5crl9QchNMY9+g=="; }; }; - "eslint-plugin-react-refresh-0.4.4" = { + "eslint-plugin-react-refresh-0.4.5" = { name = "eslint-plugin-react-refresh"; packageName = "eslint-plugin-react-refresh"; - version = "0.4.4"; + version = "0.4.5"; src = fetchurl { - url = "https://registry.npmjs.org/eslint-plugin-react-refresh/-/eslint-plugin-react-refresh-0.4.4.tgz"; - sha512 = "eD83+65e8YPVg6603Om2iCIwcQJf/y7++MWm4tACtEswFLYMwxwVWAfwN+e19f5Ad/FOyyNg9Dfi5lXhH3Y3rA=="; + url = "https://registry.npmjs.org/eslint-plugin-react-refresh/-/eslint-plugin-react-refresh-0.4.5.tgz"; + sha512 = "D53FYKJa+fDmZMtriODxvhwrO+IOqrxoEo21gMA0sjHdU6dPVH4OhyFip9ypl8HOF5RV5KdTo+rBQLvnY2cO8w=="; }; }; "eslint-plugin-unicorn-48.0.1" = { @@ -25458,13 +26124,13 @@ let sha512 = "oVNDqzBC9h3GO+NTgWeLMhhGigy6/bQaQbHS+0z7C4YEu/qK/yxHvca/2PTZtGNPsCrHwOTgKMrwu02A9iPBmw=="; }; }; - "eslint-plugin-vue-9.18.1" = { + "eslint-plugin-vue-9.19.2" = { name = "eslint-plugin-vue"; packageName = "eslint-plugin-vue"; - version = "9.18.1"; + version = "9.19.2"; src = fetchurl { - url = "https://registry.npmjs.org/eslint-plugin-vue/-/eslint-plugin-vue-9.18.1.tgz"; - sha512 = 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packageName = "esrap"; - version = "1.1.1"; + version = "1.2.1"; src = fetchurl { - url = "https://registry.npmjs.org/esrap/-/esrap-1.1.1.tgz"; - sha512 = "PIgHGLP8VAG4Iao4CbOc+/5tgn+TpzGhyAuVCR5qgcFgPOUk9Ds61bH7hD2lbjDuu86lagofx3lVrRFWcIF+Gg=="; + url = "https://registry.npmjs.org/esrap/-/esrap-1.2.1.tgz"; + sha512 = "dhkcOLfN/aDdMFI1iwPEcy/XqAZzGNfgfEJjZozy2tia6u0dQoZyXzkRshHTckuNsM+c0CYQndY+uRFe3N+AIQ=="; }; }; "esrecurse-4.3.0" = { @@ -25629,15 +26286,6 @@ let sha512 = "KmfKL3b6G+RXvP8N1vr3Tq1kL/oCFgn2NYXEtqP8/L3pKapUA4G8cFVaoF3SU323CD4XypR/ffioHmkti6/Tag=="; }; }; - "essentials-1.2.0" = { - name = "essentials"; - packageName = "essentials"; - version = "1.2.0"; - src = fetchurl { - url = "https://registry.npmjs.org/essentials/-/essentials-1.2.0.tgz"; - sha512 = "kP/j7Iw7KeNE8b/o7+tr9uX2s1wegElGOoGZ2Xm35qBr4BbbEcH3/bxR2nfH9l9JANCq9AUrvKw+gRuHtZp0HQ=="; - }; - }; "estraverse-4.3.0" = { name = "estraverse"; packageName = "estraverse"; @@ -25710,6 +26358,15 @@ let sha512 = 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"fast-deep-equal-3.1.3" = { name = "fast-deep-equal"; packageName = "fast-deep-equal"; @@ -26673,15 +27330,6 @@ let sha512 = "DVj4CQIYYow0BlaelwK1pHl5n5cRSJfM60UA0zK891sVInoPri2Ekj7+e1CT3/3qxXenpI+nBBmQAcJPJgaj4w=="; }; }; - "fast-glob-3.3.0" = { - name = "fast-glob"; - packageName = "fast-glob"; - version = "3.3.0"; - src = fetchurl { - url = "https://registry.npmjs.org/fast-glob/-/fast-glob-3.3.0.tgz"; - sha512 = "ChDuvbOypPuNjO8yIDf36x7BlZX1smcUMTTcyoIjycexOxd6DFsKsg21qVBzEmr3G7fUKIRy2/psii+CIUt7FA=="; - }; - }; "fast-glob-3.3.1" = { name = "fast-glob"; packageName = "fast-glob"; @@ -26763,13 +27411,13 @@ let sha512 = "g6KuKWmFXc0fID8WWH0jit4g0AGBoJhCkJMb1RmbsSEUNvQ+ZC8D6CUZ+GtF8nMzSPXnhiePyyqqipzNNEnHjg=="; }; }; - "fast-readable-async-iterator-1.1.1" = { + "fast-readable-async-iterator-1.1.2" = { name = "fast-readable-async-iterator"; packageName = "fast-readable-async-iterator"; - version = "1.1.1"; + version = "1.1.2"; src = fetchurl { - url = "https://registry.npmjs.org/fast-readable-async-iterator/-/fast-readable-async-iterator-1.1.1.tgz"; - sha512 = "xEHkLUEmStETI+15zhglJLO9TjXxNkkp2ldEfYVZdcqxFhM172EfGl1irI6mVlTxXspYKH1/kjevnt/XSsPeFA=="; + url = "https://registry.npmjs.org/fast-readable-async-iterator/-/fast-readable-async-iterator-1.1.2.tgz"; + sha512 = "RvoeUNYOmXLr3j6ZcThapEWw8xoXZe0DHHIOvqJH2VOzbJ9lYLDSIpJg0hqoSkh9yzFPvR1aocuWl67ECPZrdQ=="; }; }; "fast-safe-stringify-2.1.1" = { @@ -26835,13 +27483,13 @@ let sha512 = "eRnCtTTtGZFpQCwhJiUOuxPQWRXVKYDn0b2PeHfXL6/Zi53SLAzAHfVhVWK2AryC/WH05kGfxhFIPvTF0SXQzg=="; }; }; - "fastq-1.15.0" = { + "fastq-1.16.0" = { name = "fastq"; packageName = "fastq"; - version = "1.15.0"; + version = "1.16.0"; src = fetchurl { - url = "https://registry.npmjs.org/fastq/-/fastq-1.15.0.tgz"; - sha512 = "wBrocU2LCXXa+lWBt8RoIRD89Fi8OdABODa/kEnyeyjS5aZO5/GNvI5sEINADqP/h8M29UHTHUb53sUu5Ihqdw=="; + url = "https://registry.npmjs.org/fastq/-/fastq-1.16.0.tgz"; + sha512 = "ifCoaXsDrsdkWTtiNJX5uzHDsrck5TzfKKDcuFFTIrrc/BS076qgEIfoIy1VeZqViznfKiysPYTh/QeHtnIsYA=="; }; }; "fault-1.0.4" = { @@ -26961,6 +27609,15 @@ let sha512 = "e6eB7zN6UBSwGVwrbWVH+gdLnkW9WwHhmq2YDK1Sh30pzx1onRVGBvogTlUeWxwTa+L86NYdo4hFkh7O8ZjSnA=="; }; }; + "fflate-0.8.1" = { + name = "fflate"; + packageName = "fflate"; + version = "0.8.1"; + src = fetchurl { + url = "https://registry.npmjs.org/fflate/-/fflate-0.8.1.tgz"; + sha512 = "/exOvEuc+/iaUm105QIiOt4LpBdMTWsXxqR0HDF35vx3fmaKzw7354gTilCh5rkzEt8WYyG//ku3h3nRmd7CHQ=="; + }; + }; "fifo-0.1.4" = { name = "fifo"; packageName = "fifo"; @@ -27051,13 +27708,13 @@ let sha512 = "7Gps/XWymbLk2QLYK4NzpMOrYjMhdIxXuIvy2QBsLE6ljuodKvdkWs/cpyJJ3CVIVpH0Oi1Hvg1ovbMzLdFBBg=="; }; }; - "file-entry-cache-7.0.2" = { + "file-entry-cache-8.0.0" = { name = "file-entry-cache"; packageName = "file-entry-cache"; - version = "7.0.2"; + version = "8.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/file-entry-cache/-/file-entry-cache-7.0.2.tgz"; - sha512 = "TfW7/1iI4Cy7Y8L6iqNdZQVvdXn0f8B4QcIXmkIbtTIe/Okm/nSlHb4IwGzRVOd3WfSieCgvf5cMzEfySAIl0g=="; + url = "https://registry.npmjs.org/file-entry-cache/-/file-entry-cache-8.0.0.tgz"; + sha512 = "XXTUwCvisa5oacNGRP9SfNtYBNAMi+RPwBFmblZEF7N7swHYQS6/Zfk7SRwx4D5j3CH211YNRco1DEMNVfZCnQ=="; }; }; "file-or-stdin-1.0.2" = { @@ -27213,15 +27870,6 @@ let sha512 = "hcFKyUG57yWGAzu1CMt/dPzYZuv+jAJUT85bL8mrXvNe6hWj6yEHEc4EdcgiA6Z3oi1/9wXJdZPXF2dZNgwgOg=="; }; }; - "filesize-10.1.0" = { - name = "filesize"; - packageName = "filesize"; - version = "10.1.0"; - src = fetchurl { - url = "https://registry.npmjs.org/filesize/-/filesize-10.1.0.tgz"; - sha512 = "GTLKYyBSDz3nPhlLVPjPWZCnhkd9TrrRArNcy8Z+J2cqScB7h2McAzR6NBX6nYOoWafql0roY8hrocxnZBv9CQ=="; - }; - }; "filesize-6.4.0" = { name = "filesize"; packageName = "filesize"; @@ -27357,15 +28005,6 @@ let sha512 = "/U4CYp1214Xrp3u3Fqr9yNynUrr5Le4y0SsJh2lMDDSbpwYSz3M2SMWQC+wqcx79cN8PQtHQIL8KnuY9M66fdg=="; }; }; - "find-requires-1.0.0" = { - name = "find-requires"; - packageName = "find-requires"; - version = "1.0.0"; - src = fetchurl { - url = "https://registry.npmjs.org/find-requires/-/find-requires-1.0.0.tgz"; - sha512 = "UME7hNwBfzeISSFQcBEDemEEskpOjI/shPrpJM5PI4DSdn6hX0dmz+2dL70blZER2z8tSnTRL+2rfzlYgtbBoQ=="; - }; - }; "find-up-1.1.2" = { name = "find-up"; packageName = "find-up"; @@ -27420,6 +28059,15 @@ let sha512 = "v2ZsoEuVHYy8ZIlYqwPe/39Cy+cFDzp4dXPaxNvkEuouymu+2Jbz0PxpKarJHYJTmv2HWT3O382qY8l4jMWthw=="; }; }; + "find-up-simple-1.0.0" = { + name = "find-up-simple"; + packageName = "find-up-simple"; + version = "1.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/find-up-simple/-/find-up-simple-1.0.0.tgz"; + sha512 = "q7Us7kcjj2VMePAa02hDAF6d+MzsdsAWEwYyOpwUtlerRBkOEPBCRZrAV4XfcSN8fHAgaD0hP7miwoay6DCprw=="; + }; + }; "find-versions-5.1.0" = { name = "find-versions"; packageName = "find-versions"; @@ -27564,6 +28212,15 @@ let sha512 = "CYcENa+FtcUKLmhhqyctpclsq7QF38pKjZHsGNiSQF5r4FtoKDWabFDl3hzaEQMvT1LHEysw5twgLvpYYb4vbw=="; }; }; + "flat-cache-4.0.0" = { + name = "flat-cache"; + packageName = "flat-cache"; + version = "4.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/flat-cache/-/flat-cache-4.0.0.tgz"; + sha512 = "EryKbCE/wxpxKniQlyas6PY1I9vwtF3uCBweX+N8KYTCn3Y12RTGtQAJ/bd5pl7kxUAc8v/R3Ake/N17OZiFqA=="; + }; + }; "flatiron-0.4.3" = { name = "flatiron"; packageName = "flatiron"; @@ -27609,13 +28266,13 @@ let sha512 = "dz4HxH6pOvbUzZpZ/yXhafjbR2I8cenK5xL0KtBFb7U2ADsR+OwXifnxZjij/pZWF775uSCMzWVd+jDik2H2IA=="; }; }; - "flow-parser-0.222.0" = { + "flow-parser-0.225.1" = { name = "flow-parser"; packageName = "flow-parser"; - version = "0.222.0"; + version = "0.225.1"; src = fetchurl { - url = "https://registry.npmjs.org/flow-parser/-/flow-parser-0.222.0.tgz"; - sha512 = "Fq5OkFlFRSMV2EOZW+4qUYMTE0uj8pcLsYJMxXYriSBDpHAF7Ofx3PibCTy3cs5P6vbsry7eYj7Z7xFD49GIOQ=="; + url = "https://registry.npmjs.org/flow-parser/-/flow-parser-0.225.1.tgz"; + sha512 = "50fjR6zbLQcpq5IFNkheUSY/AFPxVeeLiBM5B3NQBSKId2G0cUuExOlDDOguxc49dl9lnh8hI1xcYlPJWNp4KQ=="; }; }; "fluent-ffmpeg-2.1.2" = { @@ -27663,6 +28320,15 @@ let sha512 = "1VzOtuEM8pC9SFU1E+8KfTjZyMztRsgEfwQl44z8A25uy13jSzTj6dyK2Df52iV0vgHCfBwLhDWevLn95w5v6Q=="; }; }; + "follow-redirects-1.15.4" = { + name = "follow-redirects"; + packageName = "follow-redirects"; + version = "1.15.4"; + src = fetchurl { + url = "https://registry.npmjs.org/follow-redirects/-/follow-redirects-1.15.4.tgz"; + sha512 = "Cr4D/5wlrb0z9dgERpUL3LrmPKVDsETIJhaCMeDfuFYcqa5bldGV6wBsAN6X/vxlXQtFBMrXdXxdL8CbDTGniw=="; + }; + }; "follow-redirects-1.5.10" = { name = "follow-redirects"; packageName = "follow-redirects"; @@ -27897,13 +28563,13 @@ let sha512 = "buRG0fpBtRHSTCOASe6hD258tEubFoRLb4ZNA6NxMVHNw2gOcwHo9wyablzMzOA5z9xA9L1KNjk/Nt6MT9aYow=="; }; }; - "fp-ts-2.16.1" = { + "fp-ts-2.16.2" = { name = "fp-ts"; packageName = "fp-ts"; - version = "2.16.1"; + version = "2.16.2"; src = fetchurl { - url = "https://registry.npmjs.org/fp-ts/-/fp-ts-2.16.1.tgz"; - sha512 = "by7U5W8dkIzcvDofUcO42yl9JbnHTEDBrzu3pt5fKT+Z4Oy85I21K80EYJYdjQGC2qum4Vo55Ag57iiIK4FYuA=="; + url = "https://registry.npmjs.org/fp-ts/-/fp-ts-2.16.2.tgz"; + sha512 = "CkqAjnIKFqvo3sCyoBTqgJvF+bHrSik584S9nhTjtBESLx26cbtVMR/T9a6ApChOcSDAaM3JydDmWDUn4EEXng=="; }; }; "fraction.js-4.3.7" = { @@ -28059,6 +28725,15 @@ let sha512 = "MGIE4HOvQCeUCzmlHs0vXpih4ysz4wg9qiSAu6cd42lVwPbTM1TjV7RusoyQqMmk/95gdQZX72u+YW+c3eEpFQ=="; }; }; + "fs-extra-11.2.0" = { + name = "fs-extra"; + packageName = "fs-extra"; + version = "11.2.0"; + src = fetchurl { + url = "https://registry.npmjs.org/fs-extra/-/fs-extra-11.2.0.tgz"; + sha512 = "PmDi3uwK5nFuXh7XDTlVnS17xJS7vW36is2+w3xcv8SVxiB4NyATf4ctkVY5bkSjX0Y4nbvZCq1/EjtEyr9ktw=="; + }; + }; "fs-extra-3.0.1" = { name = "fs-extra"; packageName = "fs-extra"; @@ -28185,15 +28860,6 @@ let sha512 = "OO0pH2lK6a0hZnAdau5ItzHPI6pUlvI7jMVnxUQRtw4owF2wk8lOSabtGDCTP4Ggrg2MbGnWO9X8K1t4+fGMDw=="; }; }; - "fs2-0.3.9" = { - name = "fs2"; - packageName = "fs2"; - version = "0.3.9"; - src = fetchurl { - url = "https://registry.npmjs.org/fs2/-/fs2-0.3.9.tgz"; - sha512 = "WsOqncODWRlkjwll+73bAxVW3JPChDgaPX3DT4iTTm73UmG4VgALa7LaFblP232/DN60itkOrPZ8kaP1feksGQ=="; - }; - }; "fsevents-1.2.13" = { name = "fsevents"; packageName = "fsevents"; @@ -28320,22 +28986,22 @@ let sha512 = "R1fam6D4CyKQGNlvJne4dkNF+PvUUl7TAJInvTGa9fti9qAv95quQz29GXapA4d8Ec266mJJxFVh82M4GIIGDQ=="; }; }; - "gatsby-core-utils-4.12.1" = { + "gatsby-core-utils-4.13.0" = { name = "gatsby-core-utils"; packageName = "gatsby-core-utils"; - version = "4.12.1"; + version = "4.13.0"; src = fetchurl { - url = "https://registry.npmjs.org/gatsby-core-utils/-/gatsby-core-utils-4.12.1.tgz"; - sha512 = "YW7eCK2M6yGQerT5LkdOHLZTNYMsDvcgeDMRy0q66FWKj7twPZX428I6NaLCMeF5dYoj1HOOO0u96iNlW5jcKQ=="; + url = "https://registry.npmjs.org/gatsby-core-utils/-/gatsby-core-utils-4.13.0.tgz"; + sha512 = "+oJJsADfcEnzpQpof+L5qtP4iSeMaEPn1QSjXENlg/go9Pi/4eqb+Nn3y3q8bC/zy4hMWFWrPdMJmdW581uNvA=="; }; }; - "gatsby-telemetry-4.12.1" = { + "gatsby-telemetry-4.13.0" = { name = "gatsby-telemetry"; packageName = "gatsby-telemetry"; - version = "4.12.1"; + version = "4.13.0"; src = fetchurl { - url = "https://registry.npmjs.org/gatsby-telemetry/-/gatsby-telemetry-4.12.1.tgz"; - sha512 = "MTHcKt5Cl68DveBpsduwfJdRjoXg48fcjITo1TspbxS2R0WnTZPRohGbA+JmQdY+O1eUSysdrONIjf6r86nhiA=="; + url = "https://registry.npmjs.org/gatsby-telemetry/-/gatsby-telemetry-4.13.0.tgz"; + sha512 = "tUtXF782y4AlQd8hMMOcwoqB4vT+umjApXi4RefWy6vc45Zi/oB3x6IYYgoTuTeZigL0OZWbXyiNLur9vFebVw=="; }; }; "gauge-2.7.4" = { @@ -28383,6 +29049,15 @@ let sha512 = "4FcCj9e8j8rCjvLkqRpGZBLgTC/xr9XEf5By3x77cDucWWB3pJK6FEwXZCTCbb4z8xdaOoi4owBNrvn3ciDdxA=="; }; }; + "geckodriver-4.3.0" = { + name = "geckodriver"; + packageName = "geckodriver"; + version = "4.3.0"; + src = fetchurl { + url = "https://registry.npmjs.org/geckodriver/-/geckodriver-4.3.0.tgz"; + sha512 = "QfpvxFsMORwKpvnLslkHCr3NTCczHAvkte6+pQGsiUZXKBe6mO4TTb727b+9KMVSK6XZqhR6ZwImKdP+F5vS6A=="; + }; + }; "gelf-stream-1.1.1" = { name = "gelf-stream"; packageName = "gelf-stream"; @@ -28518,6 +29193,15 @@ let sha512 = "2nk+7SIVb14QrgXFHcm84tD4bKQz0RxPuMT8Ag5KPOq7J5fEmAg0UbXdTOSHqNuHSU28k55qnceesxXRZGzKWA=="; }; }; + "get-func-name-2.0.2" = { + name = "get-func-name"; + packageName = "get-func-name"; + version = "2.0.2"; + src = fetchurl { + url = "https://registry.npmjs.org/get-func-name/-/get-func-name-2.0.2.tgz"; + sha512 = "8vXOvuE167CtIc3OyItco7N/dpRtBbYOsPsXCz7X/PMnlGjYjSGuZJgM1Y7mmew7BKf9BqvLX2tnOVy1BBUsxQ=="; + }; + }; "get-installed-path-2.1.1" = { name = "get-installed-path"; packageName = "get-installed-path"; @@ -28590,6 +29274,15 @@ let sha512 = "g/Q1aTSDOxFpchXC4i8ZWvxA1lnPqx/JHqcpIw0/LX9T8x/GBbi6YnlN5nhaKIFkT8oFsscUKgDJYxfwfS6QsQ=="; }; }; + "get-port-7.0.0" = { + name = "get-port"; + packageName = "get-port"; + version = "7.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/get-port/-/get-port-7.0.0.tgz"; + sha512 = "mDHFgApoQd+azgMdwylJrv2DX47ywGq1i5VFJE7fZ0dttNq3iQMfsU4IvEgBHojA3KqEudyu7Vq+oN8kNaNkWw=="; + }; + }; "get-port-please-3.0.1" = { name = "get-port-please"; packageName = "get-port-please"; @@ -28806,15 +29499,6 @@ let sha512 = "zs9rlfa7HyaJAKG9o+V7C6qfMzyc+tb1IIXdUFcOBcR1U7siKy/uPdauLlrH1mc0vOgUwIv4BF+QxPiiTYz3Rw=="; }; }; - "git-clone-0.2.0" = { - name = "git-clone"; - packageName = "git-clone"; - version = "0.2.0"; - src = fetchurl { - url = "https://registry.npmjs.org/git-clone/-/git-clone-0.2.0.tgz"; - sha512 = "1UAkEPIFbyjHaddljUKvPhhLRnrKaImT71T7rdvSvWLXw95nLdhdi6Qmlx0KOWoV1qqvHGLq5lMLJEZM0JXk8A=="; - }; - }; "git-config-path-2.0.0" = { name = "git-config-path"; packageName = "git-config-path"; @@ -29202,6 +29886,15 @@ let sha512 = "PT6XReJ+D07JvGoxQMkT6qji/jVNfX/h364XHZOWeRzy64sSFr+xJ5OX7LI3b4MPQzdL4H8Y8M0xzPpsVMwA8Q=="; }; }; + "global-directory-4.0.1" = { + name = "global-directory"; + packageName = "global-directory"; + version = "4.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/global-directory/-/global-directory-4.0.1.tgz"; + sha512 = "wHTUcDUoZ1H5/0iVqEudYW4/kAlN5cZ3j/bXn0Dpbizl9iaUVeWSHqiOjsgk6OW2bkLclbBjzewBz6weQ1zA2Q=="; + }; + }; "global-dirs-0.1.1" = { name = "global-dirs"; packageName = "global-dirs"; @@ -29275,13 +29968,13 @@ let sha512 = "WOBp/EEGUiIsJSp7wcv/y6MO+lV9UoncWqxuFfm8eBwzWNgyfBd6Gz+IeKQ9jCmyhoH99g15M3T+QaVHFjizVA=="; }; }; - "globals-13.23.0" = { + "globals-13.24.0" = { name = "globals"; packageName = "globals"; - version = "13.23.0"; + version = "13.24.0"; src = fetchurl { - url = "https://registry.npmjs.org/globals/-/globals-13.23.0.tgz"; - sha512 = "XAmF0RjlrjY23MA51q3HltdlGxUpXPvg0GioKiD9X6HD28iMjo2dKC8Vqwm7lne4GNr78+RHTfliktR6ZH09wA=="; + url = "https://registry.npmjs.org/globals/-/globals-13.24.0.tgz"; + sha512 = 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"header-range-parser"; + packageName = "header-range-parser"; + version = "1.1.3"; + src = fetchurl { + url = "https://registry.npmjs.org/header-range-parser/-/header-range-parser-1.1.3.tgz"; + sha512 = "B9zCFt3jH8g09LR1vHL4pcAn8yMEtlSlOUdQemzHMRKMImNIhhszdeosYFfNW0WXKQtXIlWB+O4owHJKvEJYaA=="; + }; + }; "heap-0.2.7" = { name = "heap"; packageName = "heap"; @@ -30535,6 +31255,15 @@ let sha512 = "oWv4T4yJ52iKrufjnyZPkrN0CH3QnrUqdB6In1g5Fe1mia8GmF36gnfNySxoZtxD5+NmYw1EElVXiBk93UeskA=="; }; }; + "html-encoding-sniffer-4.0.0" = { + name = "html-encoding-sniffer"; + packageName = "html-encoding-sniffer"; + version = "4.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/html-encoding-sniffer/-/html-encoding-sniffer-4.0.0.tgz"; + sha512 = "Y22oTqIU4uuPgEemfz7NDJz6OeKf12Lsu+QC+s3BVpda64lTiMYCyGwg5ki4vFxkMwQdeZDl2adZoqUgdFuTgQ=="; + }; + }; "html-entities-1.4.0" = { name = "html-entities"; packageName = "html-entities"; @@ -30616,13 +31345,13 @@ let sha512 = 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fetchurl { - url = "https://registry.npmjs.org/ignore-walk/-/ignore-walk-6.0.3.tgz"; - sha512 = "C7FfFoTA+bI10qfeydT8aZbvr91vAEU+2W5BZUlzPec47oNb07SsOfwYrtxuvOYdUApPP/Qlh4DtAO51Ekk2QA=="; + url = "https://registry.npmjs.org/ignore-walk/-/ignore-walk-6.0.4.tgz"; + sha512 = "t7sv42WkwFkyKbivUCglsQW5YWMskWtbEf4MNKX5u/CCWHKSPzN4FtBQGsQZgCLbxOzpVlcbWVK5KB3auIOjSw=="; }; }; "image-data-uri-2.0.1" = { @@ -31435,15 +32164,6 @@ let sha512 = "f8KcQ1D80V7RnqVm+/lirO9zkOxjGxhaTC1IPrBGd3MEfNgmNG67tSUO9gTi2F3Blr2Az6g1vocaxzkVnWl9MA=="; }; }; - "import-meta-resolve-3.1.1" = { - name = "import-meta-resolve"; - packageName = "import-meta-resolve"; - version = "3.1.1"; - src = fetchurl { - url = "https://registry.npmjs.org/import-meta-resolve/-/import-meta-resolve-3.1.1.tgz"; - sha512 = "qeywsE/KC3w9Fd2ORrRDUw6nS/nLwZpXgfrOc2IILvZYnCaEMd+D56Vfg9k4G29gIeVi3XKql1RQatME8iYsiw=="; - }; - }; "import-meta-resolve-4.0.0" = { name = "import-meta-resolve"; packageName = "import-meta-resolve"; @@ -31498,6 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"inflight-1.0.6" = { name = "inflight"; packageName = "inflight"; @@ -31660,13 +32398,13 @@ let sha512 = "uJ4nbH00MM9fjTJ5xdw0zzvtXMkeGb0WV6dzSWvFv2/+ks6FIhpkt+Ge/eLdh0Ah6Vjw5pLMyNfoHQpRDRVFbQ=="; }; }; - "ink-table-3.0.0" = { + "ink-table-3.1.0" = { name = "ink-table"; packageName = "ink-table"; - version = "3.0.0"; + version = "3.1.0"; src = fetchurl { - url = "https://registry.npmjs.org/ink-table/-/ink-table-3.0.0.tgz"; - sha512 = "RtcYjenHKZWjnwVNQ6zSYWMOLKwkWscDAJsqUQXftyjkYho1gGrluGss87NOoIzss0IKr74lKasd6MtlQYALiA=="; + url = "https://registry.npmjs.org/ink-table/-/ink-table-3.1.0.tgz"; + sha512 = "qxVb4DIaEaJryvF9uZGydnmP9Hkmas3DCKVpEcBYC0E4eJd3qNgNe+PZKuzgCERFe9LfAS1TNWxCr9+AU4v3YA=="; }; }; "ink-testing-library-2.1.0" = { @@ -32749,6 +33487,15 @@ let sha512 = "eoGsQVAAyvLFRKnbt4jo7Il56agsH5I04pDymPoxRp/tnna5yiIpdNzvKPOy5G1Ff0zY/jfN2hClb7ju+sOrdA=="; }; }; + "is-in-ci-0.1.0" = { + name = "is-in-ci"; + packageName = "is-in-ci"; + version = "0.1.0"; + src = fetchurl { + url = 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"jsdom-23.2.0" = { + name = "jsdom"; + packageName = "jsdom"; + version = "23.2.0"; + src = fetchurl { + url = "https://registry.npmjs.org/jsdom/-/jsdom-23.2.0.tgz"; + sha512 = "L88oL7D/8ufIES+Zjz7v0aes+oBMh2Xnh3ygWvL0OaICOomKEPKuPnIfBJekiXr+BHbbMjrWn/xqrDQuxFTeyA=="; + }; + }; "jsep-1.3.8" = { name = "jsep"; packageName = "jsep"; @@ -34333,67 +35098,76 @@ let sha512 = "xKqzzWXDttJuOcawBt4KnKHHIf5oQ/Cxax+0PWFG+DFDgHNAdi+TXECADI+RYiFUMmx8792xsMbbgXj4CwnP4g=="; }; }; - "jsii-1.92.0" = { + "jsii-1.93.0" = { + name = "jsii"; + packageName = "jsii"; + version = "1.93.0"; + src = fetchurl { + url = "https://registry.npmjs.org/jsii/-/jsii-1.93.0.tgz"; + sha512 = "J6In5MDWcmVosOwZxdwcW+NisQZ2p9g2zWFwCO3RpMoHmpzYasChZSvRvpgR5iFB7m10QRebU+45R2WCGsadfg=="; + }; + }; + "jsii-5.2.44" = { name = "jsii"; packageName = "jsii"; - version = "1.92.0"; + version = "5.2.44"; src = fetchurl { - url = "https://registry.npmjs.org/jsii/-/jsii-1.92.0.tgz"; - sha512 = 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"1.5.0"; - src = fetchurl { - url = "https://registry.npmjs.org/json-cycle/-/json-cycle-1.5.0.tgz"; - sha512 = "GOehvd5PO2FeZ5T4c+RxobeT5a1PiGpF4u9/3+UvrMU4bhnVqzJY7hm39wg8PDCqkU91fWGH8qjWR4bn+wgq9w=="; - }; - }; "json-parse-better-errors-1.0.2" = { name = "json-parse-better-errors"; packageName = "json-parse-better-errors"; @@ -34450,13 +35206,13 @@ let sha512 = "xyFwyhro/JEof6Ghe2iz2NcXoj2sloNsWr/XsERDK/oiPCfaNhl5ONfp+jQdAZRQQ0IJWNzH9zIZF7li91kh2w=="; }; }; - "json-parse-even-better-errors-3.0.0" = { + "json-parse-even-better-errors-3.0.1" = { name = "json-parse-even-better-errors"; packageName = "json-parse-even-better-errors"; - version = "3.0.0"; + version = "3.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/json-parse-even-better-errors/-/json-parse-even-better-errors-3.0.0.tgz"; - sha512 = "iZbGHafX/59r39gPwVPRBGw0QQKnA7tte5pSMrhWOW7swGsVvVTjmfyAV9pNqk8YGT7tRCdxRu8uzcgZwoDooA=="; + url = "https://registry.npmjs.org/json-parse-even-better-errors/-/json-parse-even-better-errors-3.0.1.tgz"; + sha512 = "aatBvbL26wVUCLmbWdCpeu9iF5wOyWpagiKkInA+kfws3sWdBrTnsvN2CKcyCYyUrc7rebNBlK6+kteg7ksecg=="; }; }; "json-parse-helpfulerror-1.0.3" = { @@ -34621,13 +35377,13 @@ let sha512 = "ZClg6AaYvamvYEE82d3Iyd3vSSIjQ+odgjaTzRuO3s7toCdFKczob2i0zCh7JE8kWn17yvAWhUVxvqGwUalsRA=="; }; }; - "json2jsii-0.4.0" = { + "json2jsii-0.4.3" = { name = "json2jsii"; packageName = "json2jsii"; - version = "0.4.0"; + version = "0.4.3"; src = fetchurl { - url = "https://registry.npmjs.org/json2jsii/-/json2jsii-0.4.0.tgz"; - sha512 = "4I5ip2aG7e7LN1pa1aiFgUYAGXmhq4Ggbk6KJRXlaAdewGfYyOK2YlpUI0Dqpfs84kuEsbSTwDO4P6oEs2YEdQ=="; + url = "https://registry.npmjs.org/json2jsii/-/json2jsii-0.4.3.tgz"; + sha512 = "9PNmX7v94XVR5RiblCvtoCbFy3HALnRqZWLT8LSXEE7wujudmMXzdSFyyK0YwYd7dxpzNXirPf6eoQG5xL9N5A=="; }; }; "json3-3.2.6" = { @@ -34990,15 +35746,6 @@ let sha512 = "86GgN2vzfUu7m9Wcj63iUkuDzFNYFVmjeDm2GzWpUk+opB0pEpMsw6ePCMrhYkumz2C1ihqtZzOMAg7FiXcNoQ=="; }; }; - "jwt-decode-3.1.2" = { - name = "jwt-decode"; - packageName = "jwt-decode"; - version = "3.1.2"; - src = fetchurl { - url = "https://registry.npmjs.org/jwt-decode/-/jwt-decode-3.1.2.tgz"; - sha512 = "UfpWE/VZn0iP50d8cz9NrZLM9lSWhcJ+0Gt/nm4by88UL+J1SiKN8/5dkjMmbEzwL2CAe+67GsegCbIKtbp75A=="; - }; - }; "k-bucket-0.6.0" = { name = "k-bucket"; packageName = "k-bucket"; @@ -35296,6 +36043,15 @@ let sha512 = "Xq9nH7KlWZmXAtodXDDRE7vs6DU1gTU8zYDHDiWLSip45Egwq3plLHzPn27NgvzL2r1LMPC1vdqh98sQxtqj4A=="; }; }; + "ky-0.33.3" = { + name = "ky"; + packageName = "ky"; + version = "0.33.3"; + src = fetchurl { + url = "https://registry.npmjs.org/ky/-/ky-0.33.3.tgz"; + sha512 = "CasD9OCEQSFIam2U8efFK81Yeg8vNMTBUqtMOHlrcWQHqUX3HeCl9Dr31u4toV7emlH8Mymk5+9p0lL6mKb/Xw=="; + }; + }; "labeled-stream-splicer-2.0.2" = { name = "labeled-stream-splicer"; packageName = "labeled-stream-splicer"; @@ -35638,6 +36394,15 @@ let sha512 = "yRHaiQDizWSzoXk3APcA71eOI/UuhEkNN9DiW2Tt44mhYzX4joFoCZlxsSOF7RyeLlfqzFLQI1ngFq3ggMPhOw=="; }; }; + "lighthouse-logger-2.0.1" = { + name = "lighthouse-logger"; + packageName = "lighthouse-logger"; + version = "2.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/lighthouse-logger/-/lighthouse-logger-2.0.1.tgz"; + sha512 = "ioBrW3s2i97noEmnXxmUq7cjIcVRjT5HBpAYy8zE11CxU9HqlWHHeRxfeN1tn8F7OEMVPIC9x1f8t3Z7US9ehQ=="; + }; + }; "lightningcss-1.22.1" = { name = "lightningcss"; packageName = "lightningcss"; @@ -35980,6 +36745,24 @@ let sha512 = "uxKD2HIj042/HBx77NBcmEPsD+hxCgAtjEWlYNScuUjIsh/62Uyu39GOR68TBR68v+jqDL9zfftCWoUo4y03sQ=="; }; }; + "local-pkg-0.4.3" = { + name = "local-pkg"; + packageName = "local-pkg"; + version = "0.4.3"; + src = fetchurl { + url = "https://registry.npmjs.org/local-pkg/-/local-pkg-0.4.3.tgz"; + sha512 = "SFppqq5p42fe2qcZQqqEOiVRXl+WCP1MdT6k7BDEW1j++sp5fIY+/fdRQitvKgB5BrBcmrs5m/L0v2FrU5MY1g=="; + }; + }; + "local-pkg-0.5.0" = { + name = "local-pkg"; + packageName = "local-pkg"; + version = "0.5.0"; + src = fetchurl { + url = "https://registry.npmjs.org/local-pkg/-/local-pkg-0.5.0.tgz"; + sha512 = "ok6z3qlYyCDS4ZEU27HaU6x/xZa9Whf8jD4ptH5UZTQYZVYeb9bnZ3ojVhiJNLiXK1Hfc0GNbLXcmZ5plLDDBg=="; + }; + }; "localforage-1.10.0" = { name = "localforage"; packageName = "localforage"; @@ -35989,13 +36772,13 @@ let sha512 = "14/H1aX7hzBBmmh7sGPd+AOMkkIrHM3Z1PAyGgZigA1H1p5O5ANnMyWzvpAETtG68/dC4pC0ncy3+PPGzXZHPg=="; }; }; - "localtunnel-2.0.2" = { - name = "localtunnel"; - packageName = "localtunnel"; - version = "2.0.2"; + "locate-app-2.2.5" = { + name = "locate-app"; + packageName = "locate-app"; + version = "2.2.5"; src = fetchurl { - url = "https://registry.npmjs.org/localtunnel/-/localtunnel-2.0.2.tgz"; - sha512 = "n418Cn5ynvJd7m/N1d9WVJISLJF/ellZnfsLnx8WBWGzxv/ntNcFkJ1o6se5quUhCplfLGBNL5tYHiq5WF3Nug=="; + url = "https://registry.npmjs.org/locate-app/-/locate-app-2.2.5.tgz"; + sha512 = "3/Gyrt5xmwUT/Pz1A951XI0a03yEs7Wph3nuxrl00BTdFWogFONK/YTR+SM9Hc7/lpvuYvk2J6GTaSje4COR+A=="; }; }; "locate-character-3.0.0" = { @@ -36133,15 +36916,6 @@ let sha512 = "mKnC+QJ9pWVzv+C4/U3rRsHapFfHvQFoFB92e52xeyGMcX6/OlIl78je1u8vePzYZSkkogMPJ2yjxxsb89cxyw=="; }; }; - "lodash-id-0.14.1" = { - name = "lodash-id"; - packageName = "lodash-id"; - version = "0.14.1"; - src = fetchurl { - url = "https://registry.npmjs.org/lodash-id/-/lodash-id-0.14.1.tgz"; - sha512 = "ikQPBTiq/d5m6dfKQlFdIXFzvThPi2Be9/AHxktOnDSfSxE1j9ICbBT5Elk1ke7HSTgM38LHTpmJovo9/klnLg=="; - }; - }; "lodash._arraycopy-3.0.0" = { name = "lodash._arraycopy"; packageName = "lodash._arraycopy"; @@ -36979,15 +37753,6 @@ let sha512 = "C7IOaBBK/0gMORRBd8OETNx3kmOkgIWIPvyDpZSCTwUrpYmgZwJkjZeOD8ww4xbOUOs4/attY+pciKvadNfFbg=="; }; }; - "log-6.3.1" = { - name = "log"; - packageName = "log"; - version = "6.3.1"; - src = fetchurl { - url = "https://registry.npmjs.org/log/-/log-6.3.1.tgz"; - sha512 = "McG47rJEWOkXTDioZzQNydAVvZNeEkSyLJ1VWkFwfW+o1knW+QSi8D1KjPn/TnctV+q99lkvJNe1f0E1IjfY2A=="; - }; - }; "log-chopper-1.0.2" = { name = "log-chopper"; packageName = "log-chopper"; @@ -37006,15 +37771,6 @@ let sha512 = "U7KCmLdqsGHBLeWqYlFA0V0Sl6P08EE1ZrmA9cxjUE0WVqT9qnyVDPz1kzpFEP0jdJuFnasWIfSd7fsaNXkpbg=="; }; }; - "log-node-8.0.3" = { - name = "log-node"; - packageName = "log-node"; - version = "8.0.3"; - src = fetchurl { - url = "https://registry.npmjs.org/log-node/-/log-node-8.0.3.tgz"; - sha512 = "1UBwzgYiCIDFs8A0rM2QdBFo8Wd8UQ0HrSTu/MNI+/2zN3NoHRj2fhplurAyuxTYUXu3Oohugq1jAn5s05u1MQ=="; - }; - }; "log-symbols-1.0.2" = { name = "log-symbols"; packageName = "log-symbols"; @@ -37051,6 +37807,15 @@ let sha512 = "l0x2DvrW294C9uDCoQe1VSU4gf529FkSZ6leBl4TiqZH/e+0R7hSfHQBNut2mNygDgHwvYHfFLn6Oxb3VWj2rA=="; }; }; + "log-symbols-6.0.0" = { + name = "log-symbols"; + packageName = "log-symbols"; + version = "6.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/log-symbols/-/log-symbols-6.0.0.tgz"; + sha512 = "i24m8rpwhmPIS4zscNzK6MSEhk0DUWa/8iYQWxhffV8jkI4Phvs3F+quL5xvS0gdQR0FyTCMMH33Y78dDTzzIw=="; + }; + }; "log-update-2.3.0" = { name = "log-update"; packageName = "log-update"; @@ -37213,6 +37978,15 @@ let sha512 = "RPNliZOFkqFumDhvYqOaNY4Uz9oJM2K9tC6JWsJJsNdhuONW4LQHRBpb0qf4pJApVffI5N39SwzWZJuEhfd7eQ=="; }; }; + "loupe-2.3.7" = { + name = "loupe"; + packageName = "loupe"; + version = "2.3.7"; + src = fetchurl { + url = "https://registry.npmjs.org/loupe/-/loupe-2.3.7.tgz"; + sha512 = "zSMINGVYkdpYSOBmLi0D1Uo7JU9nVdQKrHxC8eYlV+9YKK9WePqAlL7lSlorG/U2Fw1w0hTBmaa/jrQ3UbPHtA=="; + }; + }; "lowdb-0.13.1" = { name = "lowdb"; packageName = "lowdb"; @@ -37231,6 +38005,15 @@ let sha512 = "2+x8esE/Wb9SQ1F9IHaYWfsC9FIecLOPrK4g17FGEayjUWH172H6nwicRovGvSE2CPZouc2MCIqCI7h9d+GftQ=="; }; }; + "lowdb-7.0.1" = { + name = "lowdb"; + packageName = "lowdb"; + version = "7.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/lowdb/-/lowdb-7.0.1.tgz"; + sha512 = "neJAj8GwF0e8EpycYIDFqEPcx9Qz4GUho20jWFR7YiFeXzF1YMLdxB36PypcTSPMA+4+LvgyMacYhlr18Zlymw=="; + }; + }; "lower-case-1.1.4" = { name = "lower-case"; packageName = "lower-case"; @@ -37321,6 +38104,15 @@ let sha512 = "B7gr+F6MkqB3uzINHXNctGieGsRTMwIBgxkp0yq/5BwcuDzD4A8wQpHQW6vDAm1uKSLQghmRdD9sKqf2vJ1cEg=="; }; }; + "lru-cache-10.1.0" = { + name = "lru-cache"; + packageName = "lru-cache"; + version = "10.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/lru-cache/-/lru-cache-10.1.0.tgz"; + sha512 = "/1clY/ui8CzjKFyjdvwPWJUYKiFVXG2I2cY0ssG7h4+hwk+XOIX7ZSG9Q7TW8TW3Kp3BUSqgFWBLgL4PJ+Blag=="; + }; + }; "lru-cache-2.2.0" = { name = "lru-cache"; packageName = "lru-cache"; @@ -37384,15 +38176,6 @@ let sha512 = "jumlc0BIUrS3qJGgIkWZsyfAM7NCWiBcCDhnd+3NNM5KbBmLTgHVfWBcg6W+rLUsIpzpERPsvwUP7CckAQSOoA=="; }; }; - "lru-queue-0.1.0" = { - name = "lru-queue"; - packageName = "lru-queue"; - version = "0.1.0"; - src = fetchurl { - url = "https://registry.npmjs.org/lru-queue/-/lru-queue-0.1.0.tgz"; - sha512 = "BpdYkt9EvGl8OfWHDQPISVpcl5xZthb+XPsbELj5AQXxIC8IriDZIQYjBJPEm5rS420sjZ0TLEzRcq5KdBhYrQ=="; - }; - }; "lt_donthave-1.0.1" = { name = "lt_donthave"; packageName = "lt_donthave"; @@ -37448,15 +38231,6 @@ let sha512 = "RmF0AsMzgt25qzqqLc1+MbHmhdx0ojF2Fvs4XnOqz2ZOBXzzkEwc/dJQZCYHAn7v1jbVOjAZfK8msRn4BxO4VQ=="; }; }; - "magic-string-0.27.0" = { - name = "magic-string"; - packageName = "magic-string"; - version = "0.27.0"; - src = fetchurl { - url = "https://registry.npmjs.org/magic-string/-/magic-string-0.27.0.tgz"; - sha512 = "8UnnX2PeRAPZuN12svgR9j7M1uWMovg/CEnIwIG0LFkXSJJe4PdfUGiTGl8V9bsBHFUtfVINcSyYxd7q+kx9fA=="; - }; - }; "magic-string-0.30.5" = { name = "magic-string"; packageName = "magic-string"; @@ -37889,6 +38663,15 @@ let sha512 = "PRsaiG84bK+AMvxziE/lCFss8juXjNaWzVbN5tXAm4XjeaS9NAHhop+PjQxz2A9h8Q4M/xGmzP8vqNwy6JeK0A=="; }; }; + "marky-1.2.5" = { + name = "marky"; + packageName = "marky"; + version = "1.2.5"; + src = fetchurl { + url = "https://registry.npmjs.org/marky/-/marky-1.2.5.tgz"; + sha512 = "q9JtQJKjpsVxCRVgQ+WapguSbKC3SQ5HEzFGPAJMStgh3QjCawp00UKv3MTTAArTmGmmPUvllHZoNbZ3gs0I+Q=="; + }; + }; "mastodon-api-1.3.0" = { name = "mastodon-api"; packageName = "mastodon-api"; @@ -38456,15 +39239,6 @@ let sha512 = "EGowvkkgbMcIChjMTMkESFDbZeSh8xZ7kNSF0hAiAN4Jh6jgHCRS0Ga/+C8y6Au+oqpezRHCfPsmJ2+DwAgiwQ=="; }; }; - "memoizee-0.4.15" = { - name = "memoizee"; - packageName = "memoizee"; - version = "0.4.15"; - src = fetchurl { - url = "https://registry.npmjs.org/memoizee/-/memoizee-0.4.15.tgz"; - sha512 = "UBWmJpLZd5STPm7PMUlOw/TSy972M+z8gcyQ5veOnSDRREz/0bmpyTfKt3/51DhEBqCZQn1udM/5flcSPYhkdQ=="; - }; - }; "memory-cache-0.2.0" = { name = "memory-cache"; packageName = "memory-cache"; @@ -38654,15 +39428,6 @@ let sha512 = "Ks2/7e+3JuwQcpLybc6wTHyqg13HDjOhLcE+YaAEub9DbSxF+ieMvxUlybmWW9luRMh9Cd0rO9aNtzUT51xfNQ=="; }; }; - "method-override-3.0.0" = { - name = "method-override"; - packageName = "method-override"; - version = "3.0.0"; - src = fetchurl { - url = "https://registry.npmjs.org/method-override/-/method-override-3.0.0.tgz"; - sha512 = "IJ2NNN/mSl9w3kzWB92rcdHpz+HjkxhDJWNDBqSlas+zQdP8wBiJzITPg08M/k2uVvMow7Sk41atndNtt/PHSA=="; - }; - }; "methods-1.1.2" = { name = "methods"; packageName = "methods"; @@ -39347,6 +40112,15 @@ let sha512 = "115fLhvZVqWwHPbClyntxEVfVDfl9DLLTuJvq3g2O/Oxi8AiNouAHvDSzHS0viUJc+V5vm3eq91Xwqn9dp4jRA=="; }; }; + "milliparsec-2.3.0" = { + name = "milliparsec"; + packageName = "milliparsec"; + version = "2.3.0"; + src = fetchurl { + url = "https://registry.npmjs.org/milliparsec/-/milliparsec-2.3.0.tgz"; + sha512 = "b+6KYJw+DwQjk24qCUuq+lZvRXDpXJ02qsllKgKaDurHpQ0v7D5op9VAkdYM/pXRhFeh7uLYHmnwFnYvdXGa3A=="; + }; + }; "mime-1.2.4" = { name = "mime"; packageName = "mime"; @@ -39392,6 +40166,15 @@ let sha512 = "jSCU7/VB1loIWBZe14aEYHU/+1UMEHoaO7qxCOVJOw9GgH72VAWppxNcjU+x9a2k3GSIBXNKxXQFqRvvZ7vr3A=="; }; }; + "mime-4.0.1" = { + name = "mime"; + packageName = "mime"; + version = "4.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/mime/-/mime-4.0.1.tgz"; + sha512 = "5lZ5tyrIfliMXzFtkYyekWbtRXObT9OWa8IwQ5uxTBDHucNNwniRqo0yInflj+iYi5CBa6qxadGzGarDfuEOxA=="; + }; + }; "mime-db-1.33.0" = { name = "mime-db"; packageName = "mime-db"; @@ -39527,6 +40310,15 @@ let sha512 = "vqiC06CuhBTUdZH+RYl8sFrL096vA45Ok5ISO6sE/Mr1jRbGH4Csnhi8f3wKVl7x8mO4Au7Ir9D3Oyv1VYMFJw=="; }; }; + "mimic-function-5.0.0" = { + name = "mimic-function"; + packageName = "mimic-function"; + version = "5.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/mimic-function/-/mimic-function-5.0.0.tgz"; + sha512 = "RBfQ+9X9DpXdEoK7Bu+KeEU6vFhumEIiXKWECPzRBmDserEq4uR2b/VCm0LwpMSosoq2k+Zuxj/GzOr0Fn6h/g=="; + }; + }; "mimic-response-1.0.1" = { name = "mimic-response"; packageName = "mimic-response"; @@ -39599,13 +40391,13 @@ let sha512 = "r9deDe9p5FJUPZAk3A59wGH7Ii9YrjjWw0jmw/liSbHl2CHiyXj6FcDXDu2K3TjVAXqiJdaw3xxwlZZr9E6nHg=="; }; }; - "miniflare-3.20231030.0" = { + "miniflare-3.20231218.1" = { name = "miniflare"; packageName = "miniflare"; - version = "3.20231030.0"; + version = "3.20231218.1"; src = fetchurl { - url = "https://registry.npmjs.org/miniflare/-/miniflare-3.20231030.0.tgz"; - sha512 = "iCg1dNauUG+kNp7jizcNmV/1XFItuTDvD/6xIC34PrszgKxYCbBO2R72y5NEDJTwaqr5ohQI/320wuJ8GEe7nQ=="; + url = "https://registry.npmjs.org/miniflare/-/miniflare-3.20231218.1.tgz"; + sha512 = "rl/wADgaRLpbl7EMobwbAt6BgVqkOoWsVQJAliIIUCRzC0s0xg7ZVeoV+DuQD4ffN4RySXsPnP97hp7ksc7ylA=="; }; }; "minilog-3.1.0" = { @@ -39851,6 +40643,15 @@ let sha512 = "6T6lH0H8OG9kITm/Jm6tdooIbogG9e0tLgpY6mphXSm/A9u8Nq1ryBG+Qspiub9LjWlBPsPS3tWQ/Botq4FdxA=="; }; }; + "minipass-collect-2.0.1" = { + name = "minipass-collect"; + packageName = "minipass-collect"; + version = "2.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/minipass-collect/-/minipass-collect-2.0.1.tgz"; + sha512 = "D7V8PO9oaz7PWGLbCACuI1qEOsq7UKfLotx/C0Aet43fCUB/wfQ7DYeq2oR/svFJGYDHPr38SHATeaj/ZoKHKw=="; + }; + }; "minipass-fetch-1.4.1" = { name = "minipass-fetch"; packageName = "minipass-fetch"; @@ -39950,6 +40751,15 @@ let sha512 = "r6lj77KlwqLhIUku9UWYes7KJtsczvolZkzp8hbaDPPaE24OmWl5s539Mytlj22siEQKosZ26qCBgda2PKwoJw=="; }; }; + "mitt-3.0.0" = { + name = "mitt"; + packageName = "mitt"; + version = "3.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/mitt/-/mitt-3.0.0.tgz"; + sha512 = "7dX2/10ITVyqh4aOSVI9gdape+t9l2/8QxHrFmUXu4EEUpdlxl6RudZUPZoc+zuY2hk1j7XxVroIVIan/pD/SQ=="; + }; + }; "mixin-deep-1.3.2" = { name = "mixin-deep"; packageName = "mixin-deep"; @@ -40004,6 +40814,15 @@ let sha512 = "gKLcREMhtuZRwRAfqP3RFW+TK4JqApVBtOIftVgjuABpAtpxhPGaDcfvbhNvD0B8iD1oUr/txX35NjcaY6Ns/A=="; }; }; + "mlly-1.4.2" = { + name = "mlly"; + packageName = "mlly"; + version = "1.4.2"; + src = fetchurl { + url = "https://registry.npmjs.org/mlly/-/mlly-1.4.2.tgz"; + sha512 = "i/Ykufi2t1EZ6NaPLdfnZk2AX8cs0d+mTzVKuPfqPKPatxLApaBoxJQ9x1/uckXtrS/U5oisPMDkNs0yQTaBRg=="; + }; + }; "mock-require-3.0.3" = { name = "mock-require"; packageName = "mock-require"; @@ -40067,6 +40886,15 @@ let sha512 = "5LC9SOxjSc2HF6vO2CyuTDNivEdoz2IvyJJGj6X8DJ0eFyfszE0QiEd+iXmBvUP3WHxSjFH/vIsA0EN00cgr8w=="; }; }; + "moment-2.30.1" = { + name = "moment"; + packageName = "moment"; + version = "2.30.1"; + src = fetchurl { + url = "https://registry.npmjs.org/moment/-/moment-2.30.1.tgz"; + sha512 = "uEmtNhbDOrWPFS+hdjFCBfy9f2YoyzRpwcl+DqpC6taX21FzsTLQVbMV/W7PzNSX6x/bhC1zA3c2UQ5NzH6how=="; + }; + }; "moment-2.7.0" = { name = "moment"; packageName = "moment"; @@ -40085,6 +40913,15 @@ let sha512 = "72j3aNyuIsDxdF1i7CEgV2FfxM1r6aaqJyLB2vwb33mXYyoyLly+F1zbWqhA3/bVIoJ4szlUoMbUnVdid32NUQ=="; }; }; + "moment-timezone-0.5.44" = { + name = "moment-timezone"; + packageName = "moment-timezone"; + version = "0.5.44"; + src = fetchurl { + url = "https://registry.npmjs.org/moment-timezone/-/moment-timezone-0.5.44.tgz"; + sha512 = "nv3YpzI/8lkQn0U6RkLd+f0W/zy/JnoR5/EyPz/dNkPTBjA2jNLCVxaiQ8QpeLymhSZvX0wCL5s27NQWdOPwAw=="; + }; + }; "moo-0.5.2" = { name = "moo"; packageName = "moo"; @@ -40148,6 +40985,15 @@ let sha512 = "ew3qwG/TJRorTz47eW46vZ5oBw5MEYbQZVaEji44j5lAUSQSqIEoul7Kua/BatBW0H0kKQcC9kwUHa1qzaWHSw=="; }; }; + "mqtt-4.3.8" = { + name = "mqtt"; + packageName = "mqtt"; + version = "4.3.8"; + src = fetchurl { + url = "https://registry.npmjs.org/mqtt/-/mqtt-4.3.8.tgz"; + sha512 = "2xT75uYa0kiPEF/PE0VPdavmEkoBzMT/UL9moid0rAvlCtV48qBwxD62m7Ld/4j8tSkIO1E/iqRl/S72SEOhOw=="; + }; + }; "mqtt-packet-6.10.0" = { name = "mqtt-packet"; packageName = "mqtt-packet"; @@ -40175,6 +41021,15 @@ let sha512 = "hzzEagAgDyoU1Q6yg5uI+AorQgdvMCur3FcKf7NhMKWsaYg+RnbTyHRa/9IlLF9rf455MOCtcqqrQQ83pPP7Uw=="; }; }; + "mrmime-2.0.0" = { + name = "mrmime"; + packageName = "mrmime"; + version = "2.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/mrmime/-/mrmime-2.0.0.tgz"; + sha512 = "eu38+hdgojoyq63s+yTpN4XMBdt5l8HhMhc4VKLO9KM5caLIBvUm4thi7fFaxyTmCKeNnXZ5pAlBwCUnhA09uw=="; + }; + }; "ms-0.7.3" = { name = "ms"; packageName = "ms"; @@ -40229,13 +41084,13 @@ let sha512 = "VoY2AaoowHZLLKyEb5FRzuhdSzXn5quGjcMKJOJHJPxp9baYZx5t6jiHUhp5aNRlqqlt+5GXQGovMLNKsrm1hg=="; }; }; - "msgpackr-1.9.9" = { + "msgpackr-1.10.1" = { name = "msgpackr"; packageName = "msgpackr"; - version = "1.9.9"; + version = "1.10.1"; src = fetchurl { - url = "https://registry.npmjs.org/msgpackr/-/msgpackr-1.9.9.tgz"; - sha512 = "sbn6mioS2w0lq1O6PpGtsv6Gy8roWM+o3o4Sqjd6DudrL/nOugY+KyJUimoWzHnf9OkO0T6broHFnYE/R05t9A=="; + url = "https://registry.npmjs.org/msgpackr/-/msgpackr-1.10.1.tgz"; + sha512 = "r5VRLv9qouXuLiIBrLpl2d5ZvPt8svdQTl5/vMvE4nzDMyEX4sgW5yWhuBBj5UmgwOTWj8CIdSXn5sAfsHAWIQ=="; }; }; "muggle-string-0.2.2" = { @@ -40409,6 +41264,15 @@ let sha512 = "S24aGsn+HLBxUGVAUFOwGpKs7LBcG4RudKU//eWzt/mQ97/NMKQxDWHyHx63UNWk/OOdihgmzoETn1tf5nQDzQ=="; }; }; + "n12-1.8.8" = { + name = "n12"; + packageName = "n12"; + version = "1.8.8"; + src = fetchurl { + url = "https://registry.npmjs.org/n12/-/n12-1.8.8.tgz"; + sha512 = "9iuAgbFD2NkHmPbgpR9NxW754cmQZJufhohk5z/8GcOv1TkHWH+a7ISEawBqyTtcB7EuhcoP4vTIwknxXi3kpg=="; + }; + }; "nan-0.3.2" = { name = "nan"; packageName = "nan"; @@ -40553,15 +41417,6 @@ let sha512 = "p7KTHxU0CUrcOXe62Zfrb5Z13nLvPhSWR/so3kFulUQU0sgUll2Z0LwpsLN351eOOD+hRGu/F1g+6xDfPeD++Q=="; }; }; - "ncjsm-4.3.2" = { - name = "ncjsm"; - packageName = "ncjsm"; - version = "4.3.2"; - src = fetchurl { - url = "https://registry.npmjs.org/ncjsm/-/ncjsm-4.3.2.tgz"; - sha512 = "6d1VWA7FY31CpI4Ki97Fpm36jfURkVbpktizp8aoVViTZRQgr/0ddmlKerALSSlzfwQRBeSq1qwwVcBJK4Sk7Q=="; - }; - }; "nconf-0.6.9" = { name = "nconf"; packageName = "nconf"; @@ -40643,13 +41498,13 @@ let sha512 = "6R9fqJ5Zcmf+uYaFgdIHmLwNldn5HbK8L5ybn7Uz+ylX/rnOsSp1AHcvQSrCaFN+qNM1wpymHqD7mVasEOlHGQ=="; }; }; - "needle-3.2.0" = { + "needle-3.3.1" = { name = "needle"; packageName = "needle"; - version = "3.2.0"; + version = "3.3.1"; src = fetchurl { - url = "https://registry.npmjs.org/needle/-/needle-3.2.0.tgz"; - sha512 = "oUvzXnyLiVyVGoianLijF9O/RecZUf7TkBfimjGrLM4eQhXyeJwM6GeAWccwfQ9aa4gMCZKqhAOuLaMIcQxajQ=="; + url = "https://registry.npmjs.org/needle/-/needle-3.3.1.tgz"; + sha512 = "6k0YULvhpw+RoLNiQCRKOl09Rv1dPLr8hHnVjHqdolKwDrdNyk+Hmrthi4lIGPPz3r39dLx0hsF5s40sZ3Us4Q=="; }; }; "negotiator-0.5.3" = { @@ -40887,13 +41742,13 @@ let sha512 = "3yZ1vfGKOcv0dyyhUeqA0Qa6RsQ4SfUnL6o2IWR4sVg8kdnJo48XTWbMLdtnfiZTbCUdsMttNwyJcihEdGCZBw=="; }; }; - "node-abi-3.51.0" = { + "node-abi-3.54.0" = { name = "node-abi"; packageName = "node-abi"; - version = "3.51.0"; + version = "3.54.0"; src = fetchurl { - url = "https://registry.npmjs.org/node-abi/-/node-abi-3.51.0.tgz"; - sha512 = "SQkEP4hmNWjlniS5zdnfIXTk1x7Ome85RDzHlTbBtzE97Gfwz/Ipw4v/Ryk20DWIy3yCNVLVlGKApCnmvYoJbA=="; + url = "https://registry.npmjs.org/node-abi/-/node-abi-3.54.0.tgz"; + sha512 = "p7eGEiQil0YUV3ItH4/tBb781L5impVmmx2E9FRKF7d18XXzp4PGT2tdYMFY6wQqgxD0IwNZOiSJ0/K0fSi/OA=="; }; }; "node-abort-controller-3.1.1" = { @@ -40923,15 +41778,6 @@ let sha512 = "ASCL5U13as7HhOExbT6OlWJJUV/lLzL2voOSP1UVehpRD8FbSrSDjfScK/KwAvVTI5AS6r4VwbOMlIqtvRidnA=="; }; }; - "node-addon-api-3.2.1" = { - name = "node-addon-api"; - packageName = "node-addon-api"; - version = "3.2.1"; - src = fetchurl { - url = "https://registry.npmjs.org/node-addon-api/-/node-addon-api-3.2.1.tgz"; - sha512 = "mmcei9JghVNDYydghQmeDX8KoAm0FAiYyIcUt/N4nhyAipB17pllZQDOJD2fotxABnt4Mdz+dKTO7eftLg4d0A=="; - }; - }; "node-addon-api-4.3.0" = { name = "node-addon-api"; packageName = "node-addon-api"; @@ -41058,15 +41904,6 @@ let sha512 = "V4aYg89jEoVRxRb2fJdAg8FHvI7cEyYdVAh94HH0UIK8oJxUfkjlDQN9RbMx+bEjP7+ggMiFRprSti032Oipxw=="; }; }; - "node-fetch-2.6.12" = { - name = "node-fetch"; - packageName = "node-fetch"; - version = "2.6.12"; - src = fetchurl { - url = "https://registry.npmjs.org/node-fetch/-/node-fetch-2.6.12.tgz"; - sha512 = "C/fGU2E8ToujUivIO0H+tpQ6HWo4eEmchoPIoXtxCrVghxdKq+QOHqEZW7tuP3KlV3bC8FRMO5nMCC7Zm1VP6g=="; - }; - }; "node-fetch-2.6.6" = { name = "node-fetch"; packageName = "node-fetch"; @@ -41193,13 +42030,13 @@ let sha512 = "OQkWKbjQKbGkMf/xqI1jjy3oCTgMKJac58G2+bjZb3fza6gW2YrCSdMQYaoTb70crvE//Gngr4f0AgVHmqHvBQ=="; }; }; - "node-gyp-build-4.7.0" = { + "node-gyp-build-4.8.0" = { name = "node-gyp-build"; packageName = "node-gyp-build"; - version = "4.7.0"; + version = "4.8.0"; src = fetchurl { - url = "https://registry.npmjs.org/node-gyp-build/-/node-gyp-build-4.7.0.tgz"; - sha512 = "PbZERfeFdrHQOOXiAKOY0VPbykZy90ndPKk0d+CFDegTKmWp1VgOTz2xACVbr1BjCWxrQp68CXtvNsveFhqDJg=="; + url = "https://registry.npmjs.org/node-gyp-build/-/node-gyp-build-4.8.0.tgz"; + sha512 = "u6fs2AEUljNho3EYTJNBfImO5QTo/J/1Etd+NVdCj7qWKUSN/bSLkZwhDv7I+w/MSC6qJ4cknepkAYykDdK8og=="; }; }; "node-gyp-build-optional-packages-5.0.3" = { @@ -41310,13 +42147,13 @@ let sha512 = "DrjxZabGWfdV8pcj5i5XWyAlIUJye/0pJl34RVg6kCzltnDknRxFEGOIEOEwQYVQSE1Mv5maUCfg0RDSKhUPtQ=="; }; }; - "node-releases-2.0.13" = { + "node-releases-2.0.14" = { name = "node-releases"; packageName = "node-releases"; - version = "2.0.13"; + version = "2.0.14"; src = fetchurl { - url = "https://registry.npmjs.org/node-releases/-/node-releases-2.0.13.tgz"; - sha512 = "uYr7J37ae/ORWdZeQ1xxMJe3NtdmqMC/JZK+geofDrkLUApKRHPd18/TxtBOJ4A0/+uUIliorNrfYV6s1b02eQ=="; + url = "https://registry.npmjs.org/node-releases/-/node-releases-2.0.14.tgz"; + sha512 = "y10wOWt8yZpqXmOgRo77WaHEmhYQYGNA6y421PKsKYWEK8aW+cqAphborZDhqfyKrbZEN92CN1X2KbafY2s7Yw=="; }; }; "node-rsa-1.1.1" = { @@ -41796,31 +42633,13 @@ let sha512 = "UfpSvQ5YKwctmodvPPkK6Fwk603aoVsf8AEbmVKAEECrfvL8SSe1A2YIwrJ6xmTHAITKPwwZsWo7WwEbNk0kxw=="; }; }; - "npm-packlist-7.0.4" = { - name = "npm-packlist"; - packageName = "npm-packlist"; - version = "7.0.4"; - src = fetchurl { - url = "https://registry.npmjs.org/npm-packlist/-/npm-packlist-7.0.4.tgz"; - sha512 = "d6RGEuRrNS5/N84iglPivjaJPxhDbZmlbTwTDX2IbcRHG5bZCdtysYMhwiPvcF4GisXHGn7xsxv+GQ7T/02M5Q=="; - }; - }; - "npm-packlist-8.0.0" = { + "npm-packlist-8.0.1" = { name = "npm-packlist"; packageName = "npm-packlist"; - version = "8.0.0"; - src = fetchurl { - url = "https://registry.npmjs.org/npm-packlist/-/npm-packlist-8.0.0.tgz"; - sha512 = "ErAGFB5kJUciPy1mmx/C2YFbvxoJ0QJ9uwkCZOeR6CqLLISPZBOiFModAbSXnjjlwW5lOhuhXva+fURsSGJqyw=="; - }; - }; - "npm-pick-manifest-8.0.2" = { - name = "npm-pick-manifest"; - packageName = "npm-pick-manifest"; - version = "8.0.2"; + version = "8.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/npm-pick-manifest/-/npm-pick-manifest-8.0.2.tgz"; - sha512 = "1dKY+86/AIiq1tkKVD3l0WI+Gd3vkknVGAggsFeBkTvbhMQ1OND/LKkYv4JtXPKUJ8bOTCyLiqEg2P6QNdK+Gg=="; + url = "https://registry.npmjs.org/npm-packlist/-/npm-packlist-8.0.1.tgz"; + sha512 = "MQpL27ZrsJQ2kiAuQPpZb5LtJwydNRnI15QWXsf3WHERu4rzjRj6Zju/My2fov7tLuu3Gle/uoIX/DDZ3u4O4Q=="; }; }; "npm-pick-manifest-9.0.0" = { @@ -41859,15 +42678,6 @@ let sha512 = "PQCELXKt8Azvxnt5Y85GseQDJJlglTFM9L9U9gkv2y4e9s0k3GVDdOx3YoB6gm2Do0hlkzC39iCGXby+Wve1Bw=="; }; }; - "npm-registry-utilities-1.0.0" = { - name = "npm-registry-utilities"; - packageName = "npm-registry-utilities"; - version = "1.0.0"; - src = fetchurl { - url = "https://registry.npmjs.org/npm-registry-utilities/-/npm-registry-utilities-1.0.0.tgz"; - sha512 = "9xYfSJy2IFQw1i6462EJzjChL9e65EfSo2Cw6kl0EFeDp05VvU+anrQk3Fc0d1MbVCq7rWIxeer89O9SUQ/uOg=="; - }; - }; "npm-run-path-2.0.2" = { name = "npm-run-path"; packageName = "npm-run-path"; @@ -41895,13 +42705,13 @@ let sha512 = "S48WzZW777zhNIrn7gxOlISNAqi9ZC/uQFnRdbeIHhZhCA6UqpkOT8T1G7BvfdgP4Er8gF4sUbaS0i7QvIfCWw=="; }; }; - "npm-run-path-5.1.0" = { + "npm-run-path-5.2.0" = { name = "npm-run-path"; packageName = "npm-run-path"; - version = "5.1.0"; + version = "5.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/npm-run-path/-/npm-run-path-5.1.0.tgz"; - sha512 = "sJOdmRGrY2sjNTRMbSvluQqg+8X7ZK61yvzBEIDhz4f8z1TZFYABsqjjCBd/0PUNE9M6QDgHJXQkGUEm7Q+l9Q=="; + url = "https://registry.npmjs.org/npm-run-path/-/npm-run-path-5.2.0.tgz"; + sha512 = "W4/tgAXFqFA0iL7fk0+uQ3g7wkL8xJmx3XdK0VGb4cHW//eZTtKGvFBBoRKVTpY7n6ze4NL9ly7rgXcHufqXKg=="; }; }; "npmconf-2.1.3" = { @@ -42039,13 +42849,13 @@ let sha512 = "ub5E4+FBPKwAZx0UwIQOjYWGHTEq5sPqHQNRN8Z9e4A7u3Tj1weLJsL59yH9vmvqEtBHaOmT6cYQKIZOxp35FQ=="; }; }; - "nx-16.10.0" = { + "nx-17.2.8" = { name = "nx"; packageName = "nx"; - version = "16.10.0"; + version = "17.2.8"; src = fetchurl { - url = "https://registry.npmjs.org/nx/-/nx-16.10.0.tgz"; - sha512 = "gZl4iCC0Hx0Qe1VWmO4Bkeul2nttuXdPpfnlcDKSACGu3ZIo+uySqwOF8yBAxSTIf8xe2JRhgzJN1aFkuezEBg=="; + url = "https://registry.npmjs.org/nx/-/nx-17.2.8.tgz"; + sha512 = "rM5zXbuXLEuqQqcjVjClyvHwRJwt+NVImR2A6KFNG40Z60HP6X12wAxxeLHF5kXXTDRU0PFhf/yACibrpbPrAw=="; }; }; "nyc-15.1.0" = { @@ -42255,13 +43065,13 @@ let sha512 = "GBaMwwAVK9qbQN3Scdo0OyvgPW7l3lnaVMj84uTOZlswkX0KpF6fyDBJhtTthf7pymztoN36/KEr1DyhF96zEA=="; }; }; - "object.assign-4.1.4" = { + "object.assign-4.1.5" = { name = "object.assign"; packageName = "object.assign"; - version = "4.1.4"; + version = "4.1.5"; src = fetchurl { - url = "https://registry.npmjs.org/object.assign/-/object.assign-4.1.4.tgz"; - sha512 = "1mxKf0e58bvyjSCtKYY4sRe9itRk3PJpquJOjeIkz885CczcI4IvJJDLPS72oowuSh+pBxUFROpX+TU++hxhZQ=="; + url = "https://registry.npmjs.org/object.assign/-/object.assign-4.1.5.tgz"; + sha512 = "byy+U7gp+FVwmyzKPYhW2h5l3crpmGsxl7X2s8y43IgxvG4g3QZ6CffDtsNQy1WsmZpQbO+ybo0AlW7TY6DcBQ=="; }; }; "object.defaults-1.1.0" = { @@ -42498,6 +43308,15 @@ let sha512 = "1FlR+gjXK7X+AsAHso35MnyN5KqGwJRi/31ft6x0M194ht7S+rWAvd7PHss9xSKMzE0asv1pyIHaJYq+BbacAQ=="; }; }; + "onetime-7.0.0" = { + name = "onetime"; + packageName = "onetime"; + version = "7.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/onetime/-/onetime-7.0.0.tgz"; + sha512 = "VXJjc87FScF88uafS3JllDgvAm+c/Slfz06lorj2uAY34rlUu0Nt+v8wreiImcrgAjjIHp1rXpTDlLOGw29WwQ=="; + }; + }; "onml-2.1.0" = { name = "onml"; packageName = "onml"; @@ -42507,13 +43326,13 @@ let sha512 = "fvaSZRzprpwLFge/mcwE0CItfniNisVNamDdMK1FQUjh4ArQZ8ZWSkDaJbZc3XaANKZHq0xIa8NJpZ2HSe3oXA=="; }; }; - "oo-ascii-tree-1.92.0" = { + "oo-ascii-tree-1.93.0" = { name = "oo-ascii-tree"; packageName = "oo-ascii-tree"; - version = "1.92.0"; + version = "1.93.0"; src = fetchurl { - url = "https://registry.npmjs.org/oo-ascii-tree/-/oo-ascii-tree-1.92.0.tgz"; - sha512 = "rLSPbnakn5Wb3dOIVtrmn8jfHKqWv7bROpyBiw6DExq+dOG7qC49EIs89hBhyHkvLolX0oC+0a/RMPAyHEZ+1w=="; + url = "https://registry.npmjs.org/oo-ascii-tree/-/oo-ascii-tree-1.93.0.tgz"; + sha512 = "zbmrGCL/UsvxV2WlnsSrqdkdxEggxH7eA1HOk+hmimLQu+eLO4Y3VGqwt0VK04Nfe6iG6GnzRL5/XjH0j1v8bQ=="; }; }; "open-0.0.2" = { @@ -42768,13 +43587,13 @@ let sha512 = "0TUxTiFJWv+JnjWm4o9yvuskpEJLXTcng8MJuKd+SzAzp2o+OP3HWqNhB4OdJRt1Vsd9/mR0oyaEYlOnL7XIRw=="; }; }; - "ordered-binary-1.4.1" = { + "ordered-binary-1.5.1" = { name = "ordered-binary"; packageName = "ordered-binary"; - version = "1.4.1"; + version = "1.5.1"; src = fetchurl { - url = "https://registry.npmjs.org/ordered-binary/-/ordered-binary-1.4.1.tgz"; - sha512 = "9LtiGlPy982CsgxZvJGNNp2/NnrgEr6EAyN3iIEP3/8vd3YLgAZQHbQ75ZrkfBRGrNg37Dk3U6tuVb+B4Xfslg=="; + url = "https://registry.npmjs.org/ordered-binary/-/ordered-binary-1.5.1.tgz"; + sha512 = "5VyHfHY3cd0iza71JepYG50My+YUbrFtGoUz2ooEydPyPM7Aai/JW098juLr+RG6+rDJuzNNTsEQu2DZa1A41A=="; }; }; "ordered-read-streams-1.0.1" = { @@ -42930,15 +43749,6 @@ let sha512 = "NQCqOFhbpVTMX4qMe8PF8lbGtzZ+LCiN7pcNrb/413Na7+TRoe1xkKUzuWa/YEJdGQ0FvKtj35EEbDoVPO2kbA=="; }; }; - "p-event-4.2.0" = { - name = "p-event"; - packageName = "p-event"; - version = "4.2.0"; - src = fetchurl { - url = "https://registry.npmjs.org/p-event/-/p-event-4.2.0.tgz"; - sha512 = "KXatOjCRXXkSePPb1Nbi0p0m+gQAwdlbhi4wQKJPI1HsMQS9g+Sqp2o+QHziPr7eYJyOZet836KoHEVM1mwOrQ=="; - }; - }; "p-event-5.0.1" = { name = "p-event"; packageName = "p-event"; @@ -43047,6 +43857,15 @@ let sha512 = 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"https://registry.npmjs.org/postcss/-/postcss-8.4.33.tgz"; + sha512 = "Kkpbhhdjw2qQs2O2DGX+8m5OVqEcbB9HRBvuYM9pgrjEFUg30A9LmXNlTAUj4S9kgtGyrMbTzVjH7E+s5Re2yg=="; }; }; "postcss-calc-8.2.4" = { @@ -44928,13 +45792,13 @@ let sha512 = "UsWQG0AqTFQmpBegeLLc1+c3jIqBNB0zlDGRWR+dQ3pRKJL1oeMzyqmH3o2PIfn9MBdNrVPWhDbT769LxCTLJQ=="; }; }; - "postcss-colormin-6.0.0" = { + "postcss-colormin-6.0.2" = { name = "postcss-colormin"; packageName = "postcss-colormin"; - version = "6.0.0"; + version = "6.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/postcss-colormin/-/postcss-colormin-6.0.0.tgz"; - sha512 = "EuO+bAUmutWoZYgHn2T1dG1pPqHU6L4TjzPlu4t1wZGXQ/fxV16xg2EJmYi0z+6r+MGV1yvpx1BHkUaRrPa2bw=="; + url = "https://registry.npmjs.org/postcss-colormin/-/postcss-colormin-6.0.2.tgz"; + sha512 = "TXKOxs9LWcdYo5cgmcSHPkyrLAh86hX1ijmyy6J8SbOhyv6ua053M3ZAM/0j44UsnQNIWdl8gb5L7xX2htKeLw=="; }; }; "postcss-convert-values-5.1.3" = { @@ -44946,13 +45810,13 @@ let sha512 = 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packageName = "postcss-discard-comments"; - version = "6.0.0"; + version = "6.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/postcss-discard-comments/-/postcss-discard-comments-6.0.0.tgz"; - sha512 = "p2skSGqzPMZkEQvJsgnkBhCn8gI7NzRH2683EEjrIkoMiwRELx68yoUJ3q3DGSGuQ8Ug9Gsn+OuDr46yfO+eFw=="; + url = "https://registry.npmjs.org/postcss-discard-comments/-/postcss-discard-comments-6.0.1.tgz"; + sha512 = "f1KYNPtqYLUeZGCHQPKzzFtsHaRuECe6jLakf/RjSRqvF5XHLZnM2+fXLhb8Qh/HBFHs3M4cSLb1k3B899RYIg=="; }; }; "postcss-discard-duplicates-5.1.0" = { @@ -44982,13 +45846,13 @@ let sha512 = "zmX3IoSI2aoenxHV6C7plngHWWhUOV3sP1T8y2ifzxzbtnuhk1EdPwm0S1bIUNaJ2eNbWeGLEwzw8huPD67aQw=="; }; }; - "postcss-discard-duplicates-6.0.0" = { + "postcss-discard-duplicates-6.0.1" = { name = "postcss-discard-duplicates"; packageName = "postcss-discard-duplicates"; - version = "6.0.0"; + version = "6.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/postcss-discard-duplicates/-/postcss-discard-duplicates-6.0.0.tgz"; - sha512 = "bU1SXIizMLtDW4oSsi5C/xHKbhLlhek/0/yCnoMQany9k3nPBq+Ctsv/9oMmyqbR96HYHxZcHyK2HR5P/mqoGA=="; + url = "https://registry.npmjs.org/postcss-discard-duplicates/-/postcss-discard-duplicates-6.0.1.tgz"; + sha512 = "1hvUs76HLYR8zkScbwyJ8oJEugfPV+WchpnA+26fpJ7Smzs51CzGBHC32RS03psuX/2l0l0UKh2StzNxOrKCYg=="; }; }; "postcss-discard-empty-5.1.1" = { @@ -45000,13 +45864,13 @@ let sha512 = "zPz4WljiSuLWsI0ir4Mcnr4qQQ5e1Ukc3i7UfE2XcrwKK2LIPIqE5jxMRxO6GbI3cv//ztXDsXwEWT3BHOGh3A=="; }; }; - "postcss-discard-empty-6.0.0" = { + "postcss-discard-empty-6.0.1" = { name = "postcss-discard-empty"; packageName = "postcss-discard-empty"; - version = "6.0.0"; + version = "6.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/postcss-discard-empty/-/postcss-discard-empty-6.0.0.tgz"; - sha512 = "b+h1S1VT6dNhpcg+LpyiUrdnEZfICF0my7HAKgJixJLW7BnNmpRH34+uw/etf5AhOlIhIAuXApSzzDzMI9K/gQ=="; + url = "https://registry.npmjs.org/postcss-discard-empty/-/postcss-discard-empty-6.0.1.tgz"; + sha512 = "yitcmKwmVWtNsrrRqGJ7/C0YRy53i0mjexBDQ9zYxDwTWVBgbU4+C9jIZLmQlTDT9zhml+u0OMFJh8+31krmOg=="; }; }; "postcss-discard-overridden-5.1.0" = { @@ -45018,13 +45882,13 @@ let sha512 = "21nOL7RqWR1kasIVdKs8HNqQJhFxLsyRfAnUDm4Fe4t4mCWL9OJiHvlHPjcd8zc5Myu89b/7wZDnOSjFgeWRtw=="; }; }; - "postcss-discard-overridden-6.0.0" = { + "postcss-discard-overridden-6.0.1" = { name = "postcss-discard-overridden"; packageName = "postcss-discard-overridden"; - version = "6.0.0"; + version = "6.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/postcss-discard-overridden/-/postcss-discard-overridden-6.0.0.tgz"; - sha512 = "4VELwssYXDFigPYAZ8vL4yX4mUepF/oCBeeIT4OXsJPYOtvJumyz9WflmJWTfDwCUcpDR+z0zvCWBXgTx35SVw=="; + url = "https://registry.npmjs.org/postcss-discard-overridden/-/postcss-discard-overridden-6.0.1.tgz"; + sha512 = 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"postcss-merge-longhand"; - version = "6.0.0"; + version = "6.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/postcss-merge-longhand/-/postcss-merge-longhand-6.0.0.tgz"; - sha512 = "4VSfd1lvGkLTLYcxFuISDtWUfFS4zXe0FpF149AyziftPFQIWxjvFSKhA4MIxMe4XM3yTDgQMbSNgzIVxChbIg=="; + url = "https://registry.npmjs.org/postcss-merge-longhand/-/postcss-merge-longhand-6.0.2.tgz"; + sha512 = "+yfVB7gEM8SrCo9w2lCApKIEzrTKl5yS1F4yGhV3kSim6JzbfLGJyhR1B6X+6vOT0U33Mgx7iv4X9MVWuaSAfw=="; }; }; "postcss-merge-rules-5.1.4" = { @@ -45108,13 +45981,13 @@ let sha512 = "0R2IuYpgU93y9lhVbO/OylTtKMVcHb67zjWIfCiKR9rWL3GUk1677LAqD/BcHizukdZEjT8Ru3oHRoAYoJy44g=="; }; }; - "postcss-merge-rules-6.0.1" = { + "postcss-merge-rules-6.0.3" = { name = "postcss-merge-rules"; packageName = "postcss-merge-rules"; - version = "6.0.1"; + version = "6.0.3"; src = fetchurl { - url = "https://registry.npmjs.org/postcss-merge-rules/-/postcss-merge-rules-6.0.1.tgz"; - sha512 = 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+ sha512 = "tIwmF1zUPoN6xOtA/2FgVk1ZKrLcCvE0dpZLtzyyte0j9zUeB8RTbCqrHZGjJlxOvNWKMYtunLrrl7HPOiR46w=="; }; }; "postcss-minify-gradients-5.1.1" = { @@ -45144,13 +46017,13 @@ let sha512 = "VGvXMTpCEo4qHTNSa9A0a3D+dxGFZCYwR6Jokk+/3oB6flu2/PnPXAh2x7x52EkY5xlIHLm+Le8tJxe/7TNhzw=="; }; }; - "postcss-minify-gradients-6.0.0" = { + "postcss-minify-gradients-6.0.1" = { name = "postcss-minify-gradients"; packageName = "postcss-minify-gradients"; - version = "6.0.0"; + version = "6.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/postcss-minify-gradients/-/postcss-minify-gradients-6.0.0.tgz"; - sha512 = "wO0F6YfVAR+K1xVxF53ueZJza3L+R3E6cp0VwuXJQejnNUH0DjcAFe3JEBeTY1dLwGa0NlDWueCA1VlEfiKgAA=="; + url = "https://registry.npmjs.org/postcss-minify-gradients/-/postcss-minify-gradients-6.0.1.tgz"; + sha512 = "M1RJWVjd6IOLPl1hYiOd5HQHgpp6cvJVLrieQYS9y07Yo8itAr6jaekzJphaJFR0tcg4kRewCk3kna9uHBxn/w=="; }; }; "postcss-minify-params-5.1.4" = { @@ -45162,13 +46035,13 @@ let sha512 = 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"postcss-minify-selectors"; - version = "6.0.0"; + version = "6.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/postcss-minify-selectors/-/postcss-minify-selectors-6.0.0.tgz"; - sha512 = "ec/q9JNCOC2CRDNnypipGfOhbYPuUkewGwLnbv6omue/PSASbHSU7s6uSQ0tcFRVv731oMIx8k0SP4ZX6be/0g=="; + url = "https://registry.npmjs.org/postcss-minify-selectors/-/postcss-minify-selectors-6.0.2.tgz"; + sha512 = "0b+m+w7OAvZejPQdN2GjsXLv5o0jqYHX3aoV0e7RBKPCsB7TYG5KKWBFhGnB/iP3213Ts8c5H4wLPLMm7z28Sg=="; }; }; "postcss-modules-extract-imports-3.0.0" = { @@ -45207,13 +46080,13 @@ let sha512 = "2/u2zraspoACtrbFRnTijMiQtb4GW4BvatjaG/bCjYQo8kLTdevCUlwuBHx2sCnSyrI3x3qj4ZK1j5LQBgzmwA=="; }; }; - "postcss-modules-scope-3.0.0" = { + "postcss-modules-scope-3.1.0" = { name = "postcss-modules-scope"; packageName = "postcss-modules-scope"; - version = "3.0.0"; + version = "3.1.0"; src = fetchurl { - url = "https://registry.npmjs.org/postcss-modules-scope/-/postcss-modules-scope-3.0.0.tgz"; - sha512 = 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= "aW5LbMNRZ+oDV57PF9K+WI1Z8MPnF+A8qbajg/T8PP126YrGX1f9IQx21GI2OlGz7XFJi/fNi0GTbY948XJtXg=="; }; }; "postcss-normalize-display-values-5.1.0" = { @@ -45261,13 +46134,13 @@ let sha512 = "WP4KIM4o2dazQXWmFaqMmcvsKmhdINFblgSeRgn8BJ6vxaMyaJkwAzpPpuvSIoG/rmX3M+IrRZEz2H0glrQNEA=="; }; }; - "postcss-normalize-display-values-6.0.0" = { + "postcss-normalize-display-values-6.0.1" = { name = "postcss-normalize-display-values"; packageName = "postcss-normalize-display-values"; - version = "6.0.0"; + version = "6.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/postcss-normalize-display-values/-/postcss-normalize-display-values-6.0.0.tgz"; - sha512 = "Qyt5kMrvy7dJRO3OjF7zkotGfuYALETZE+4lk66sziWSPzlBEt7FrUshV6VLECkI4EN8Z863O6Nci4NXQGNzYw=="; + url = "https://registry.npmjs.org/postcss-normalize-display-values/-/postcss-normalize-display-values-6.0.1.tgz"; + sha512 = "mc3vxp2bEuCb4LgCcmG1y6lKJu1Co8T+rKHrcbShJwUmKJiEl761qb/QQCfFwlrvSeET3jksolCR/RZuMURudw=="; }; }; "postcss-normalize-positions-5.1.1" = { @@ -45279,13 +46152,13 @@ let sha512 = "6UpCb0G4eofTCQLFVuI3EVNZzBNPiIKcA1AKVka+31fTVySphr3VUgAIULBhxZkKgwLImhzMR2Bw1ORK+37INg=="; }; }; - "postcss-normalize-positions-6.0.0" = { + "postcss-normalize-positions-6.0.1" = { name = "postcss-normalize-positions"; packageName = "postcss-normalize-positions"; - version = "6.0.0"; + version = "6.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/postcss-normalize-positions/-/postcss-normalize-positions-6.0.0.tgz"; - sha512 = "mPCzhSV8+30FZyWhxi6UoVRYd3ZBJgTRly4hOkaSifo0H+pjDYcii/aVT4YE6QpOil15a5uiv6ftnY3rm0igPg=="; + url = "https://registry.npmjs.org/postcss-normalize-positions/-/postcss-normalize-positions-6.0.1.tgz"; + sha512 = "HRsq8u/0unKNvm0cvwxcOUEcakFXqZ41fv3FOdPn916XFUrympjr+03oaLkuZENz3HE9RrQE9yU0Xv43ThWjQg=="; }; }; "postcss-normalize-repeat-style-5.1.1" = { @@ -45297,13 +46170,13 @@ let sha512 = "mFpLspGWkQtBcWIRFLmewo8aC3ImN2i/J3v8YCFUwDnPu3Xz4rLohDO26lGjwNsQxB3YF0KKRwspGzE2JEuS0g=="; }; }; - "postcss-normalize-repeat-style-6.0.0" = { + "postcss-normalize-repeat-style-6.0.1" = { name = "postcss-normalize-repeat-style"; packageName = "postcss-normalize-repeat-style"; - version = "6.0.0"; + version = "6.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/postcss-normalize-repeat-style/-/postcss-normalize-repeat-style-6.0.0.tgz"; - sha512 = "50W5JWEBiOOAez2AKBh4kRFm2uhrT3O1Uwdxz7k24aKtbD83vqmcVG7zoIwo6xI2FZ/HDlbrCopXhLeTpQib1A=="; + url = "https://registry.npmjs.org/postcss-normalize-repeat-style/-/postcss-normalize-repeat-style-6.0.1.tgz"; + sha512 = "Gbb2nmCy6tTiA7Sh2MBs3fj9W8swonk6lw+dFFeQT68B0Pzwp1kvisJQkdV6rbbMSd9brMlS8I8ts52tAGWmGQ=="; }; }; "postcss-normalize-string-5.1.0" = { @@ -45315,13 +46188,13 @@ let sha512 = "oYiIJOf4T9T1N4i+abeIc7Vgm/xPCGih4bZz5Nm0/ARVJ7K6xrDlLwvwqOydvyL3RHNf8qZk6vo3aatiw/go3w=="; }; }; - "postcss-normalize-string-6.0.0" = { + "postcss-normalize-string-6.0.1" = { name = "postcss-normalize-string"; packageName = "postcss-normalize-string"; - version = "6.0.0"; + version = "6.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/postcss-normalize-string/-/postcss-normalize-string-6.0.0.tgz"; - sha512 = "KWkIB7TrPOiqb8ZZz6homet2KWKJwIlysF5ICPZrXAylGe2hzX/HSf4NTX2rRPJMAtlRsj/yfkrWGavFuB+c0w=="; + url = "https://registry.npmjs.org/postcss-normalize-string/-/postcss-normalize-string-6.0.1.tgz"; + sha512 = "5Fhx/+xzALJD9EI26Aq23hXwmv97Zfy2VFrt5PLT8lAhnBIZvmaT5pQk+NuJ/GWj/QWaKSKbnoKDGLbV6qnhXg=="; }; }; "postcss-normalize-timing-functions-5.1.0" = { @@ -45333,13 +46206,13 @@ let sha512 = "DOEkzJ4SAXv5xkHl0Wa9cZLF3WCBhF3o1SKVxKQAa+0pYKlueTpCgvkFAHfk+Y64ezX9+nITGrDZeVGgITJXjg=="; }; }; - "postcss-normalize-timing-functions-6.0.0" = { + "postcss-normalize-timing-functions-6.0.1" = { name = "postcss-normalize-timing-functions"; packageName = "postcss-normalize-timing-functions"; - version = "6.0.0"; + version = "6.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/postcss-normalize-timing-functions/-/postcss-normalize-timing-functions-6.0.0.tgz"; - sha512 = "tpIXWciXBp5CiFs8sem90IWlw76FV4oi6QEWfQwyeREVwUy39VSeSqjAT7X0Qw650yAimYW5gkl2Gd871N5SQg=="; + url = "https://registry.npmjs.org/postcss-normalize-timing-functions/-/postcss-normalize-timing-functions-6.0.1.tgz"; + sha512 = "4zcczzHqmCU7L5dqTB9rzeqPWRMc0K2HoR+Bfl+FSMbqGBUcP5LRfgcH4BdRtLuzVQK1/FHdFoGT3F7rkEnY+g=="; }; }; "postcss-normalize-unicode-5.1.1" = { @@ -45351,13 +46224,13 @@ let sha512 = "qnCL5jzkNUmKVhZoENp1mJiGNPcsJCs1aaRmURmeJGES23Z/ajaln+EPTD+rBeNkSryI+2WTdW+lwcVdOikrpA=="; }; }; - "postcss-normalize-unicode-6.0.0" = { + "postcss-normalize-unicode-6.0.2" = { name = "postcss-normalize-unicode"; packageName = "postcss-normalize-unicode"; - version = "6.0.0"; + version = "6.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/postcss-normalize-unicode/-/postcss-normalize-unicode-6.0.0.tgz"; - sha512 = 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sha512 = "9UO79VUhPwEkzbb3RNpqqghc6lcYej1aveQteWY+4POIwlqkYE21HKWaLDF6lWNuqCobEAyTovVhtI32Rbv2RQ=="; }; }; - "postcss-ordered-values-6.0.0" = { + "postcss-ordered-values-6.0.1" = { name = "postcss-ordered-values"; packageName = "postcss-ordered-values"; - version = "6.0.0"; + version = "6.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/postcss-ordered-values/-/postcss-ordered-values-6.0.0.tgz"; - sha512 = "K36XzUDpvfG/nWkjs6d1hRBydeIxGpKS2+n+ywlKPzx1nMYDYpoGbcjhj5AwVYJK1qV2/SDoDEnHzlPD6s3nMg=="; + url = "https://registry.npmjs.org/postcss-ordered-values/-/postcss-ordered-values-6.0.1.tgz"; + sha512 = "XXbb1O/MW9HdEhnBxitZpPFbIvDgbo9NK4c/5bOfiKpnIGZDoL2xd7/e6jW5DYLsWxBbs+1nZEnVgnjnlFViaA=="; }; }; "postcss-reduce-initial-5.1.2" = { @@ -45423,13 +46296,13 @@ let sha512 = "dE/y2XRaqAi6OvjzD22pjTUQ8eOfc6m/natGHgKFBK9DxFmIm69YmaRVQrGgFlEfc1HePIurY0TmDeROK05rIg=="; }; }; - "postcss-reduce-initial-6.0.0" = { + "postcss-reduce-initial-6.0.2" = { name = "postcss-reduce-initial"; packageName = "postcss-reduce-initial"; - version = "6.0.0"; + version = "6.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/postcss-reduce-initial/-/postcss-reduce-initial-6.0.0.tgz"; - sha512 = "s2UOnidpVuXu6JiiI5U+fV2jamAw5YNA9Fdi/GRK0zLDLCfXmSGqQtzpUPtfN66RtCbb9fFHoyZdQaxOB3WxVA=="; + url = "https://registry.npmjs.org/postcss-reduce-initial/-/postcss-reduce-initial-6.0.2.tgz"; + sha512 = "YGKalhNlCLcjcLvjU5nF8FyeCTkCO5UtvJEt0hrPZVCTtRLSOH4z00T1UntQPj4dUmIYZgMj8qK77JbSX95hSw=="; }; }; "postcss-reduce-transforms-5.1.0" = { @@ -45441,13 +46314,13 @@ let sha512 = "2fbdbmgir5AvpW9RLtdONx1QoYG2/EtqpNQbFASDlixBbAYuTcJ0dECwlqNqH7VbaUnEnh8SrxOe2sRIn24XyQ=="; }; }; - "postcss-reduce-transforms-6.0.0" = { + "postcss-reduce-transforms-6.0.1" = { name = "postcss-reduce-transforms"; packageName = "postcss-reduce-transforms"; - version = "6.0.0"; + version = "6.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/postcss-reduce-transforms/-/postcss-reduce-transforms-6.0.0.tgz"; - sha512 = "FQ9f6xM1homnuy1wLe9lP1wujzxnwt1EwiigtWwuyf8FsqqXUDUp2Ulxf9A5yjlUOTdCJO6lonYjg1mgqIIi2w=="; + url = "https://registry.npmjs.org/postcss-reduce-transforms/-/postcss-reduce-transforms-6.0.1.tgz"; + sha512 = "fUbV81OkUe75JM+VYO1gr/IoA2b/dRiH6HvMwhrIBSUrxq3jNZQZitSnugcTLDi1KkQh1eR/zi+iyxviUNBkcQ=="; }; }; "postcss-reporter-7.0.5" = { @@ -45504,13 +46377,13 @@ let sha512 = "IQ7TZdoaqbT+LCpShg46jnZVlhWD2w6iQYAcYXfHARZ7X1t/UGhhceQDs5X0cGqKvYlHNOuv7Oa1xmb0oQuA3w=="; }; }; - "postcss-selector-parser-6.0.13" = { + "postcss-selector-parser-6.0.15" = { name = "postcss-selector-parser"; packageName = "postcss-selector-parser"; - version = "6.0.13"; + version = "6.0.15"; src = fetchurl { - url = "https://registry.npmjs.org/postcss-selector-parser/-/postcss-selector-parser-6.0.13.tgz"; - sha512 = "EaV1Gl4mUEV4ddhDnv/xtj7sxwrwxdetHdWUGnT4VJQf+4d05v6lHYZr8N573k5Z0BViss7BDhfWtKS3+sfAqQ=="; + url = "https://registry.npmjs.org/postcss-selector-parser/-/postcss-selector-parser-6.0.15.tgz"; + sha512 = "rEYkQOMUCEMhsKbK66tbEU9QVIxbhN18YiniAwA7XQYTVBqrBy+P2p5JcdqsHgKM2zWylp8d7J6eszocfds5Sw=="; }; }; "postcss-selector-parser-6.0.2" = { @@ -45531,13 +46404,13 @@ let sha512 = "D75KsH1zm5ZrHyxPakAxJWtkyXew5qwS70v56exwvw542d9CRtTo78K0WeFxZB4G7JXKKMbEZtZayTGdIky/eA=="; }; }; - "postcss-svgo-6.0.0" = { + "postcss-svgo-6.0.2" = { name = "postcss-svgo"; packageName = "postcss-svgo"; - version = "6.0.0"; + version = "6.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/postcss-svgo/-/postcss-svgo-6.0.0.tgz"; - sha512 = "r9zvj/wGAoAIodn84dR/kFqwhINp5YsJkLoujybWG59grR/IHx+uQ2Zo+IcOwM0jskfYX3R0mo+1Kip1VSNcvw=="; + url = "https://registry.npmjs.org/postcss-svgo/-/postcss-svgo-6.0.2.tgz"; + sha512 = "IH5R9SjkTkh0kfFOQDImyy1+mTCb+E830+9SV1O+AaDcoHTvfsvt6WwJeo7KwcHbFnevZVCsXhDmjFiGVuwqFQ=="; }; }; "postcss-syntax-0.36.2" = { @@ -45558,13 +46431,13 @@ let sha512 = "5JiODlELrz8L2HwxfPnhOWZYWDxVHWL83ufOv84NrcgipI7TaeRsatAhK4Tr2/ZiYldpK/wBvw5BD3qfaK96GA=="; }; }; - "postcss-unique-selectors-6.0.0" = { + "postcss-unique-selectors-6.0.2" = { name = "postcss-unique-selectors"; packageName = "postcss-unique-selectors"; - version = "6.0.0"; + version = "6.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/postcss-unique-selectors/-/postcss-unique-selectors-6.0.0.tgz"; - sha512 = "EPQzpZNxOxP7777t73RQpZE5e9TrnCrkvp7AH7a0l89JmZiPnS82y216JowHXwpBCQitfyxrof9TK3rYbi7/Yw=="; + url = "https://registry.npmjs.org/postcss-unique-selectors/-/postcss-unique-selectors-6.0.2.tgz"; + sha512 = "8IZGQ94nechdG7Y9Sh9FlIY2b4uS8/k8kdKRX040XHsS3B6d1HrJAkXrBSsSu4SuARruSsUjW3nlSw8BHkaAYQ=="; }; }; "postcss-value-parser-4.2.0" = { @@ -45720,13 +46593,13 @@ let sha512 = "L/4pUDMxcNa8R/EthV08Zt42WBO4h1rarVtK0K+QJG0X187OLo7l699jWw0GKuwzkPQ//jMFA/8Xm6Fh3J/DAg=="; }; }; - "prettier-3.1.0" = { + "prettier-3.1.1" = { name = "prettier"; packageName = "prettier"; - version = "3.1.0"; + version = "3.1.1"; src = fetchurl { - url = "https://registry.npmjs.org/prettier/-/prettier-3.1.0.tgz"; - sha512 = "TQLvXjq5IAibjh8EpBIkNKxO749UEWABoiIZehEPiY4GNpVdhaFKqSTu+QrlU6D2dPAfubRmtJTi4K4YkQ5eXw=="; + url = "https://registry.npmjs.org/prettier/-/prettier-3.1.1.tgz"; + sha512 = "22UbSzg8luF4UuZtzgiUOfcGM8s4tjBv6dJRT7j275NXsy2jb4aJa4NNveul5x4eqlF1wuhuR2RElK71RvmVaw=="; }; }; "prettier-bytes-1.0.4" = { @@ -45738,22 +46611,22 @@ let sha512 = "dLbWOa4xBn+qeWeIF60qRoB6Pk2jX5P3DIVgOQyMyvBpu931Q+8dXz8X0snJiFkQdohDDLnZQECjzsAj75hgZQ=="; }; }; - "prettier-plugin-astro-0.12.2" = { + "prettier-plugin-astro-0.12.3" = { name = "prettier-plugin-astro"; packageName = "prettier-plugin-astro"; - version = "0.12.2"; + version = "0.12.3"; src = fetchurl { - url = "https://registry.npmjs.org/prettier-plugin-astro/-/prettier-plugin-astro-0.12.2.tgz"; - sha512 = "1OXSEht27zrnX7rCa0bEpLdspeumFW4hnj4+JzPuG5bRlSOAhD0rbXBNZfRD9q0Qbr00EcCcnjd6k6M8q+GfTA=="; + url = "https://registry.npmjs.org/prettier-plugin-astro/-/prettier-plugin-astro-0.12.3.tgz"; + sha512 = "GthUSu3zCvmtVyqlArosez0xE08vSJ0R1sWurxIWpABaCkNGYFANoUdFkqmIo54EV2uPLGcVJzOucWvCjPBWvg=="; }; }; - "prettier-plugin-svelte-2.10.1" = { + "prettier-plugin-svelte-3.1.2" = { name = "prettier-plugin-svelte"; packageName = "prettier-plugin-svelte"; - version = "2.10.1"; + version = "3.1.2"; src = fetchurl { - url = "https://registry.npmjs.org/prettier-plugin-svelte/-/prettier-plugin-svelte-2.10.1.tgz"; - sha512 = "Wlq7Z5v2ueCubWo0TZzKc9XHcm7TDxqcuzRuGd0gcENfzfT4JZ9yDlCbEgxWgiPmLHkBjfOtpAWkcT28MCDpUQ=="; + url = "https://registry.npmjs.org/prettier-plugin-svelte/-/prettier-plugin-svelte-3.1.2.tgz"; + sha512 = "7xfMZtwgAWHMT0iZc8jN4o65zgbAQ3+O32V6W7pXrqNvKnHnkoyQCGCbKeUyXKZLbYE0YhFRnamfxfkEGxm8qA=="; }; }; "pretty-bytes-5.6.0" = { @@ -45954,15 +46827,6 @@ let sha512 = "1WsPDsUSMmZH5LeMLegqkPDrsGgsWwk1Exipy2hvB0o/F0ASzbpIctSCcZIK1ykJvtTJULEH+20WOFjMvGnCTg=="; }; }; - "process-utils-4.0.0" = { - name = "process-utils"; - packageName = "process-utils"; - version = "4.0.0"; - src = fetchurl { - url = "https://registry.npmjs.org/process-utils/-/process-utils-4.0.0.tgz"; - sha512 = "fMyMQbKCxX51YxR7YGCzPjLsU3yDzXFkP4oi1/Mt5Ixnk7GO/7uUTj8mrCHUwuvozWzI+V7QSJR9cZYnwNOZPg=="; - }; - }; "progress-1.1.8" = { name = "progress"; packageName = "progress"; @@ -46044,15 +46908,6 @@ let sha512 = "7nJ6v5lnJsXwGprnGXga4wx6d1POjvi5Qmf1ivTRxTjH4Z/9Czja/UCMLVmB9N93GeWOU93XaFaEt6jbuoagNw=="; }; }; - "promise-queue-2.2.5" = { - name = "promise-queue"; - packageName = "promise-queue"; - version = "2.2.5"; - src = fetchurl { - url = "https://registry.npmjs.org/promise-queue/-/promise-queue-2.2.5.tgz"; - sha512 = "p/iXrPSVfnqPft24ZdNNLECw/UrtLTpT3jpAAMzl/o5/rDsGCPo3/CQS2611flL6LkoEJ3oQZw7C8Q80ZISXRQ=="; - }; - }; "promise-retry-2.0.1" = { name = "promise-retry"; packageName = "promise-retry"; @@ -46215,6 +47070,15 @@ let sha512 = "llQsMLSUDUPT44jdrU/O37qlnifitDP+ZwrmmZcoSKyLKvtZxpyV0n2/bD/N4tBAAZ/gJEdZU7KMraoK1+XYAg=="; }; }; + "proxy-agent-6.3.0" = { + name = "proxy-agent"; + packageName = "proxy-agent"; + version = "6.3.0"; + src = fetchurl { + url = "https://registry.npmjs.org/proxy-agent/-/proxy-agent-6.3.0.tgz"; + sha512 = "0LdR757eTj/JfuU7TL2YCuAZnxWXu3tkJbg4Oq3geW/qFNT/32T0sp2HnZ9O0lMR4q3vwAt0+xCA8SR0WAD0og=="; + }; + }; "proxy-agent-6.3.1" = { name = "proxy-agent"; packageName = "proxy-agent"; @@ -46530,6 +47394,24 @@ let sha512 = "U1uufzBjz3+PkpCxFrWzh4OrMIdIb2ztzCu0YEPfRHjHswcSwHZswnK+WdsOQJsRV8WeTg3jLhJR4D867+fjsA=="; }; }; + "puppeteer-core-20.3.0" = { + name = "puppeteer-core"; + packageName = "puppeteer-core"; + version = "20.3.0"; + src = fetchurl { + url = "https://registry.npmjs.org/puppeteer-core/-/puppeteer-core-20.3.0.tgz"; + sha512 = "264pBrIui5bO6NJeOcbJrLa0OCwmA4+WK00JMrLIKTfRiqe2gx8KWTzLsjyw/bizErp3TKS7vt/I0i5fTC+mAw=="; + }; + }; + "puppeteer-core-20.9.0" = { + name = "puppeteer-core"; + packageName = "puppeteer-core"; + version = "20.9.0"; + src = fetchurl { + url = "https://registry.npmjs.org/puppeteer-core/-/puppeteer-core-20.9.0.tgz"; + sha512 = "H9fYZQzMTRrkboEfPmf7m3CLDN6JvbxXA3qTtS+dFt27tR+CsFHzPsT6pzp6lYL6bJbAPaR0HaPO6uSi+F94Pg=="; + }; + }; "purgecss-5.0.0" = { name = "purgecss"; packageName = "purgecss"; @@ -46557,13 +47439,13 @@ let sha512 = "pMpnA0qRdFp32b1sJl1wOJNxZLQ2cbQx+k6tjNtZ8CpvVhNqEPRgivZ2WOUev2YMajecdH7ctUPDvEe87nariQ=="; }; }; - "pyright-1.1.336" = { + "pyright-1.1.344" = { name = "pyright"; packageName = "pyright"; - version = "1.1.336"; + version = "1.1.344"; src = fetchurl { - url = "https://registry.npmjs.org/pyright/-/pyright-1.1.336.tgz"; - sha512 = "PE/ArjnfS5dKon05zAX2eMzSQmu4ftCITzLqKgFKuwLIRnKJ+l4QGwkCKtYvWoXKm1fWr+TjqYpdRejrYkolyg=="; + url = "https://registry.npmjs.org/pyright/-/pyright-1.1.344.tgz"; + sha512 = "K0nhCxUqoACGgyZO1VfWSx5NkT5VTe0VKblLu09RMPmrzdblZi8DbfU6Hy9OXMSe2sBbAEtK685QRVi05V98tA=="; }; }; "q-1.5.1" = { @@ -46692,6 +47574,15 @@ let sha512 = "IhMFgUmuNpyRfxA90umL7ByLlgRXu6tIfKPpF5TmcfRLlLCckfP/g3IQmju6jjpu+Hh8rA+2p6A27ZSPOOHdKw=="; }; }; + "query-selector-shadow-dom-1.0.1" = { + name = "query-selector-shadow-dom"; + packageName = "query-selector-shadow-dom"; + version = "1.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/query-selector-shadow-dom/-/query-selector-shadow-dom-1.0.1.tgz"; + sha512 = "lT5yCqEBgfoMYpf3F2xQRK7zEr1rhIIZuceDK6+xRkJQ4NMbHTwXqk4NkwDwQMNqXgG9r9fyHnzwNVs6zV5KRw=="; + }; + }; "query-string-5.1.1" = { name = "query-string"; packageName = "query-string"; @@ -46827,13 +47718,13 @@ let sha512 = "b3w19IEXnt5auacLAbePVsqPyVQUwmuhJQrrWnVhm4pP8PAMg2U9vFHbAD9XYXXbMDjdLJs0x5NLqwTV8uFK4g=="; }; }; - "quotation-2.0.2" = { + "quotation-2.0.3" = { name = "quotation"; packageName = "quotation"; - version = "2.0.2"; + version = "2.0.3"; src = fetchurl { - url = "https://registry.npmjs.org/quotation/-/quotation-2.0.2.tgz"; - sha512 = "FeUlLe40ROXHVWLZkzmeR2PNYWdkvTXEXhW6FX8axRv1ODt8Gxed3APrE1Qb5i1n70ZzZGRmvs0jY3v/BRcJQQ=="; + url = "https://registry.npmjs.org/quotation/-/quotation-2.0.3.tgz"; + sha512 = "yEc24TEgCFLXx7D4JHJJkK4JFVtatO8fziwUxY4nB/Jbea9o9CVS3gt22mA0W7rPYAGW2fWzYDSOtD94PwOyqA=="; }; }; "raf-3.3.2" = { @@ -47259,6 +48150,15 @@ let sha512 = "DI1drPHbmBcUDWrJ7ull/F2Qb8HkwBncVx8/RpKYFSIACYaVRQReISYPdZz/mt1y1+qMCOrfReTopERmaxtP6w=="; }; }; + "read-binary-file-arch-1.0.6" = { + name = "read-binary-file-arch"; + packageName = "read-binary-file-arch"; + version = "1.0.6"; + src = fetchurl { + url = "https://registry.npmjs.org/read-binary-file-arch/-/read-binary-file-arch-1.0.6.tgz"; + sha512 = "BNg9EN3DD3GsDXX7Aa8O4p92sryjkmzYYgmgTAc6CA4uGLEDzFfxOxugu21akOxpcXHiEgsYkC6nPsQvLLLmEg=="; + }; + }; "read-cache-1.0.0" = { name = "read-cache"; packageName = "read-cache"; @@ -47376,6 +48276,15 @@ let sha512 = "FCX1aT3GWyY658wzDICef4p+n0dB+ENRct8E/Qyvppj6xVpOYerBHfUu7OP5Rt1/393Tdglguf5ju5DEX4wZNg=="; }; }; + "read-package-up-11.0.0" = { + name = "read-package-up"; + packageName = "read-package-up"; + version = "11.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/read-package-up/-/read-package-up-11.0.0.tgz"; + sha512 = "MbgfoNPANMdb4oRBNg5eqLbB2t2r+o5Ua1pNt8BqGp4I0FJZhuVSOj3PaBPni4azWuSzEdNn2evevzVmEk1ohQ=="; + }; + }; "read-pkg-1.1.0" = { name = "read-pkg"; packageName = "read-pkg"; @@ -47439,6 +48348,15 @@ let sha512 = "PORM8AgzXeskHO/WEv312k9U03B8K9JSiWF/8N9sUuFjBa+9SF2u6K7VClzXwDXab51jCd8Nd36CNM+zR97ScQ=="; }; }; + "read-pkg-9.0.1" = { + name = "read-pkg"; + packageName = "read-pkg"; + version = "9.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/read-pkg/-/read-pkg-9.0.1.tgz"; + sha512 = "9viLL4/n1BJUCT1NXVTdS1jtm80yDEgR5T4yCelII49Mbj0v1rZdKqj7zCiYdbB0CuCgdrvHcNogAKTFPBocFA=="; + }; + }; "read-pkg-up-1.0.1" = { name = "read-pkg-up"; packageName = "read-pkg-up"; @@ -47772,13 +48690,13 @@ let sha512 = "LAUYz4lc+Do8/g7aeRa8JkyDErK6ekstQaqWQrNRW//MY1TvCEpMtpTWvlQ+FPbWCx+Xixu/6SHt5N0HR+SB4w=="; }; }; - "reflect-metadata-0.1.13" = { + "reflect-metadata-0.1.14" = { name = "reflect-metadata"; packageName = "reflect-metadata"; - version = "0.1.13"; + version = "0.1.14"; src = fetchurl { - url = "https://registry.npmjs.org/reflect-metadata/-/reflect-metadata-0.1.13.tgz"; - sha512 = "Ts1Y/anZELhSsjMcU605fU9RE4Oi3p5ORujwbIKXfWa+0Zxs510Qrmrce5/Jowq3cHSZSJqBjypxmHarc+vEWg=="; + url = "https://registry.npmjs.org/reflect-metadata/-/reflect-metadata-0.1.14.tgz"; + sha512 = "ZhYeb6nRaXCfhnndflDK8qI6ZQ/YcWZCISRAWICW9XYqMUwjZM9Z0DveWX/ABN01oxSHwVxKQmxeYZSsm0jh5A=="; }; }; "reflect.getprototypeof-1.0.4" = { @@ -47826,13 +48744,13 @@ let sha512 = "kY1AZVr2Ra+t+piVaJ4gxaFaReZVH40AKNo7UCX6W+dEwBo/2oZJzqfuN1qLq1oL45o56cPaTXELwrTh8Fpggg=="; }; }; - "regenerator-runtime-0.14.0" = { + "regenerator-runtime-0.14.1" = { name = "regenerator-runtime"; packageName = "regenerator-runtime"; - version = "0.14.0"; + version = "0.14.1"; src = fetchurl { - url = "https://registry.npmjs.org/regenerator-runtime/-/regenerator-runtime-0.14.0.tgz"; - sha512 = "srw17NI0TUWHuGa5CFGGmhfNIeja30WMBfbslPNhf6JrqQlLN5gcrvig1oqPxiVaXb0oW0XRKtH6Nngs5lKCIA=="; + url = "https://registry.npmjs.org/regenerator-runtime/-/regenerator-runtime-0.14.1.tgz"; + sha512 = "dYnhHh0nJoMfnkZs6GmmhFknAGRrLznOu5nc9ML+EJxGvrx6H7teuevqVqCuPcPK//3eDrrjQhehXVx9cnkGdw=="; }; }; "regenerator-transform-0.15.2" = { @@ -47880,6 +48798,15 @@ let sha512 = "sy6TXMN+hnP/wMy+ISxg3krXx7BAtWVO4UouuCN/ziM9UEne0euamVNafDfvC83bRNr95y0V5iijeDQFUNpvrg=="; }; }; + "regexparam-2.0.2" = { + name = "regexparam"; + packageName = "regexparam"; + version = "2.0.2"; + src = fetchurl { + url = "https://registry.npmjs.org/regexparam/-/regexparam-2.0.2.tgz"; + sha512 = "A1PeDEYMrkLrfyOwv2jwihXbo9qxdGD3atBYQA9JJgreAx8/7rC6IUkWOw2NQlOxLp2wL0ifQbh1HuidDfYA6w=="; + }; + }; "regexpp-3.2.0" = { name = "regexpp"; packageName = "regexpp"; @@ -49158,6 +50085,15 @@ let sha512 = "40yHxbNcl2+rzXvZuVkrYohathsSJlMTXKryG5y8uciHv1+xDLHQpgjG64JUO9nrEq2jGLH6IZ8BcZyw3wrweg=="; }; }; + "resq-1.11.0" = { + name = "resq"; + packageName = "resq"; + version = "1.11.0"; + src = fetchurl { + url = "https://registry.npmjs.org/resq/-/resq-1.11.0.tgz"; + sha512 = "G10EBz+zAAy3zUd/CDoBbXRL6ia9kOo3xRHrMDsHljI0GDkhYlyjwoCx5+3eCC4swi1uCoZQhskuJkj7Gp57Bw=="; + }; + }; "restify-4.0.3" = { name = "restify"; packageName = "restify"; @@ -49320,6 +50256,15 @@ let sha512 = "V2hovdzFbOi77/WajaSMXk2OLm+xNIeQdMMuB7icj7bk6zi2F8GGAxigcnDFpJHbNyNcgyJDiP+8nOrY5cZGrA=="; }; }; + "rgb2hex-0.2.5" = { + name = "rgb2hex"; + packageName = "rgb2hex"; + version = "0.2.5"; + src = fetchurl { + url = "https://registry.npmjs.org/rgb2hex/-/rgb2hex-0.2.5.tgz"; + sha512 = "22MOP1Rh7sAo1BZpDG6R5RFYzR2lYEgwq7HEmyW2qcsOqR2lQKmn+O//xV3YG/0rrhMC6KVX2hU+ZXuaw9a5bw=="; + }; + }; "right-align-0.1.3" = { name = "right-align"; packageName = "right-align"; @@ -49383,6 +50328,15 @@ let sha512 = "Gk8NlF062+T9CqNGn6h4tls3k6T1+/nXdOcSZVikNVtlRdYpA7wRJJMoXmuvOnLW844rPjdQ7JgXCYM6PPC/og=="; }; }; + "rimraf-5.0.5" = { + name = "rimraf"; + packageName = "rimraf"; + version = "5.0.5"; + src = fetchurl { + url = "https://registry.npmjs.org/rimraf/-/rimraf-5.0.5.tgz"; + sha512 = "CqDakW+hMe/Bz202FPEymy68P+G50RfMQK+Qo5YUqc9SPipvbGjCGKd0RSKEelbsfQuw3g5NZDSrlZZAJurH1A=="; + }; + }; "ripemd160-2.0.2" = { name = "ripemd160"; packageName = "ripemd160"; @@ -49428,6 +50382,15 @@ let sha512 = "oWzmBZwvYrU0iJHtDmhsm662rC15FRXmcjCk1xD771dFDx5jJ02ufAQQTn0etB2emNk4J9EZg/yWKpsn9BWGRw=="; }; }; + "rollup-4.9.4" = { + name = "rollup"; + packageName = "rollup"; + version = "4.9.4"; + src = fetchurl { + url = "https://registry.npmjs.org/rollup/-/rollup-4.9.4.tgz"; + sha512 = "2ztU7pY/lrQyXSCnnoU4ICjT/tCG9cdH3/G25ERqE3Lst6vl2BCM5hL2Nw+sslAvAf+ccKsAq1SkKQALyqhR7g=="; + }; + }; "rollup-plugin-inject-3.0.2" = { name = "rollup-plugin-inject"; packageName = "rollup-plugin-inject"; @@ -49689,6 +50652,15 @@ let sha512 = "xal3CZX1Xlo/k4ApwCFrHVACi9fBqJ7V+mwhBsuf/1IOKbBy098Fex+Wa/5QMubw09pSZ/u8EY8PWgevJsXp1A=="; }; }; + "safaridriver-0.1.2" = { + name = "safaridriver"; + packageName = "safaridriver"; + version = "0.1.2"; + src = fetchurl { + url = "https://registry.npmjs.org/safaridriver/-/safaridriver-0.1.2.tgz"; + sha512 = "4R309+gWflJktzPXBQCobbWEHlzC4aK3a+Ov3tz2Ib2aBxiwd11phkdIBH1l0EO22x24CJMUQkpKFumRriCSRg=="; + }; + }; "safe-array-concat-1.0.1" = { name = "safe-array-concat"; packageName = "safe-array-concat"; @@ -49833,13 +50805,13 @@ let sha512 = "pVlvK5ysevz8MzybRnDIa2YMxn0OJ7b9lDiWhMoaKPoJ7YkAg/7YtNjUgaYzElkwHxsw8dBMhaEn7UP6zxEwPg=="; }; }; - "sass-1.69.5" = { + "sass-1.69.7" = { name = "sass"; packageName = "sass"; - version = "1.69.5"; + version = "1.69.7"; src = fetchurl { - url = "https://registry.npmjs.org/sass/-/sass-1.69.5.tgz"; - sha512 = "qg2+UCJibLr2LCVOt3OlPhr/dqVHWOa9XtZf2OjbLs/T4VPSJ00udtgJxH3neXZm+QqX8B+3cU7RaLqp1iVfcQ=="; + url = "https://registry.npmjs.org/sass/-/sass-1.69.7.tgz"; + sha512 = "rzj2soDeZ8wtE2egyLXgOOHQvaC2iosZrkF6v3EUG+tBwEvhqUCzm0VP3k9gHF9LXbSrRhT5SksoI56Iw8NPnQ=="; }; }; "sass-formatter-0.7.8" = { @@ -50175,13 +51147,13 @@ let sha512 = "Ny/iyOzSSa8M5ML46IAx3iXc6tfOsYU2R4AXi2UpHk60Zrgyq6eqPj/xiOfS0rRl/iiQ/rdJkVjw/5cdUyCntQ=="; }; }; - "semver-intersect-1.4.0" = { + "semver-intersect-1.5.0" = { name = "semver-intersect"; packageName = "semver-intersect"; - version = "1.4.0"; + version = "1.5.0"; src = fetchurl { - url = "https://registry.npmjs.org/semver-intersect/-/semver-intersect-1.4.0.tgz"; - sha512 = "d8fvGg5ycKAq0+I6nfWeCx6ffaWJCsBYU0H2Rq56+/zFePYfT8mXkB3tWBSjR5BerkHNZ5eTPIk1/LBYas35xQ=="; + url = "https://registry.npmjs.org/semver-intersect/-/semver-intersect-1.5.0.tgz"; + sha512 = "BDjWX7yCC0haX4W/zrnV2JaMpVirwaEkGOBmgRQtH++F1N3xl9v7k9H44xfTqwl+yLNNSbMKosoVSTIiJVQ2Pw=="; }; }; "semver-regex-4.0.5" = { @@ -50247,13 +51219,31 @@ let sha512 = "eDqaz4MasTn6Mp3dagKzIbiNsJpgpueMEQqCJeN9F9XQRFLDGFJ0kX8R3uMp+mU7J58dWjr4q6eks/nUX/vnJQ=="; }; }; - "sentence-splitter-4.3.0" = { + "sentence-splitter-4.4.1" = { name = "sentence-splitter"; packageName = "sentence-splitter"; - version = "4.3.0"; + version = "4.4.1"; src = fetchurl { - url = "https://registry.npmjs.org/sentence-splitter/-/sentence-splitter-4.3.0.tgz"; - sha512 = "srJOMqv7JeEmsbVa/N64ULey2N6/OuZzeKWn2Zrj0DiTBlU930JGr/rKKlKQRigzXtLMOtl32/Gm5G3HW8/ULA=="; + url = "https://registry.npmjs.org/sentence-splitter/-/sentence-splitter-4.4.1.tgz"; + sha512 = "4Jks7qn5nOeY5g++wlWbLCKclo2XxT7DBrLYo68UNdP8UEWUpUNH5VgKTEd0QlTo2cYBggtVk0NkvsRhoCZdsA=="; + }; + }; + "sentence-splitter-5.0.0" = { + name = "sentence-splitter"; + packageName = "sentence-splitter"; + version = "5.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/sentence-splitter/-/sentence-splitter-5.0.0.tgz"; + sha512 = "9Mvf7L8vwpPzkH0/HtXzCbmVkyj4aQXdeG7h8ighRvO0hvcZEy2OUEjeIlnM/z4EX4vBacEfpESC65Oa2rWOig=="; + }; + }; + "serialize-error-11.0.3" = { + name = "serialize-error"; + packageName = "serialize-error"; + version = "11.0.3"; + src = fetchurl { + url = "https://registry.npmjs.org/serialize-error/-/serialize-error-11.0.3.tgz"; + sha512 = "2G2y++21dhj2R7iHAdd0FIzjGwuKZld+7Pl/bTU6YIkrC2ZMbVUjm+luj6A6V34Rv9XfKJDKpTWu9W4Gse1D9g=="; }; }; "serialize-error-2.1.0" = { @@ -50697,6 +51687,15 @@ let sha512 = "q5XPytqFEIKHkGdiMIrY10mvLRvnQh42/+GoBlFW3b2LXLE2xxJpZFdm94we0BaoV3RwJyGqg5wS7epxTv0Zvw=="; }; }; + "siginfo-2.0.0" = { + name = "siginfo"; + packageName = "siginfo"; + version = "2.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/siginfo/-/siginfo-2.0.0.tgz"; + sha512 = "ybx0WO1/8bSBLEWXZvEd7gMW3Sn3JFlW3TvX1nREbDLRNQNaeNN8WK0meBwPdAaOI7TtRRRJn/Es1zhrrCHu7g=="; + }; + }; "signal-exit-3.0.7" = { name = "signal-exit"; packageName = "signal-exit"; @@ -50814,15 +51813,6 @@ let sha512 = "Ck+rcjVaE1HotraRAS8u/+xgTvToTuoMkT9/l9lvuP5jftwnYUp6DwuJzsKErHgfyRk8IB8pqGHWEbM3tLgV1w=="; }; }; - "simple-git-3.21.0" = { - name = "simple-git"; - packageName = "simple-git"; - version = "3.21.0"; - src = fetchurl { - url = "https://registry.npmjs.org/simple-git/-/simple-git-3.21.0.tgz"; - sha512 = "oTzw9248AF5bDTMk9MrxsRzEzivMlY+DWH0yWS4VYpMhNLhDWnN06pCtaUyPnqv/FpsdeNmRqmZugMABHRPdDA=="; - }; - }; "simple-peer-6.4.4" = { name = "simple-peer"; packageName = "simple-peer"; @@ -50922,6 +51912,15 @@ let sha512 = "awzaaIPtYFdexLr6TBpcZSGPB6D1RInNO/qNetgaJloPDF/D0GkVtLvGEp8InfmLV7CyLyQ5fIRP+tVN/JmWQA=="; }; }; + "sirv-2.0.4" = { + name = "sirv"; + packageName = "sirv"; + version = "2.0.4"; + src = fetchurl { + url = "https://registry.npmjs.org/sirv/-/sirv-2.0.4.tgz"; + sha512 = "94Bdh3cC2PKrbgSOUqTiGPWVZeSiXfKOVZNJniWoqrWrRkB1CJzBU3NEbiTsPcYy1lDsANA/THzS+9WBiy5nfQ=="; + }; + }; "sisteransi-1.0.5" = { name = "sisteransi"; packageName = "sisteransi"; @@ -51201,13 +52200,13 @@ let sha512 = "KMcaAi4l/8+xEjkRICl6ak8ySoxsYG+gG6/XfRCPJPQ/haCRIJBTL4wIl8YCsmtaBovcAXGLOShyVWQ/FG8GZA=="; }; }; - "socket.io-4.7.2" = { + "socket.io-4.7.3" = { name = "socket.io"; packageName = "socket.io"; - version = "4.7.2"; + version = "4.7.3"; src = fetchurl { - url = "https://registry.npmjs.org/socket.io/-/socket.io-4.7.2.tgz"; - sha512 = "bvKVS29/I5fl2FGLNHuXlQaUH/BlzX1IN6S+NKLNZpBsPZIDH+90eQmCs2Railn4YUiww4SzUedJ6+uzwFnKLw=="; + url = "https://registry.npmjs.org/socket.io/-/socket.io-4.7.3.tgz"; + sha512 = "SE+UIQXBQE+GPG2oszWMlsEmWtHVqw/h1VrYJGK5/MC7CH5p58N448HwIrtREcvR4jfdOJAY4ieQfxMr55qbbw=="; }; }; "socket.io-adapter-0.2.0" = { @@ -51264,13 +52263,13 @@ let sha512 = "lOO9clmdgssDykiOmVQQitwBAF3I6mYcQAo7hQ7AM6Ny5X7fp8hIJ3HcQs3Rjz4SoggoxA1OgrQyY8EgTbcPYw=="; }; }; - "socket.io-client-4.7.2" = { + "socket.io-client-4.7.3" = { name = "socket.io-client"; packageName = "socket.io-client"; - version = "4.7.2"; + version = "4.7.3"; src = fetchurl { - url = "https://registry.npmjs.org/socket.io-client/-/socket.io-client-4.7.2.tgz"; - sha512 = "vtA0uD4ibrYD793SOIAwlo8cj6haOeMHrGvwPxJsxH7CeIksqJ+3Zc06RvWTIFgiSqx4A3sOnTXpfAEE2Zyz6w=="; + url = "https://registry.npmjs.org/socket.io-client/-/socket.io-client-4.7.3.tgz"; + sha512 = "nU+ywttCyBitXIl9Xe0RSEfek4LneYkJxCeNnKCuhwoH4jGXO1ipIUw/VA/+Vvv2G1MTym11fzFC0SxkrcfXDw=="; }; }; "socket.io-parser-2.1.2" = { @@ -51462,6 +52461,15 @@ let sha512 = "GRbEOUqCxemTAk/b32F2xa8wDTs+Z1QHOkbhJDQTvv/6G3ZkbJ+frYWsTcc7cBB3Fu4wy4XlLCuNtJuMn7Gsvw=="; }; }; + "sort-on-6.0.0" = { + name = "sort-on"; + packageName = "sort-on"; + version = "6.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/sort-on/-/sort-on-6.0.0.tgz"; + sha512 = "d51VlJWoFQjp+cIZRyNusCyJdP5pLAw+H+sC4C2q6RhPBv+RAb/QXXck5q3Kdm7h/ot/kD2AlpGPDee8v+0qiA=="; + }; + }; "sorted-array-functions-1.3.0" = { name = "sorted-array-functions"; packageName = "sorted-array-functions"; @@ -51903,15 +52911,6 @@ let sha512 = "Oo+0REFV59/rz3gfJNKQiBlwfHaSESl1pcGyABQsnnIfWOFt6JNj5gCog2U6MLZ//IGYD+nA8nI+mTShREReaA=="; }; }; - "sprintf-kit-2.0.1" = { - name = "sprintf-kit"; - packageName = "sprintf-kit"; - version = "2.0.1"; - src = fetchurl { - url = "https://registry.npmjs.org/sprintf-kit/-/sprintf-kit-2.0.1.tgz"; - sha512 = "2PNlcs3j5JflQKcg4wpdqpZ+AjhQJ2OZEo34NXDtlB0tIPG84xaaXhpA8XFacFiwjKA4m49UOYG83y3hbMn/gQ=="; - }; - }; "sqlite3-4.1.0" = { name = "sqlite3"; packageName = "sqlite3"; @@ -52065,6 +53064,15 @@ let sha512 = "XlkWvfIm6RmsWtNJx+uqtKLS8eqFbxUg0ZzLXqY0caEy9l7hruX8IpiDnjsLavoBgqCCR71TqWO8MaXYheJ3RQ=="; }; }; + "stackback-0.0.2" = { + name = "stackback"; + packageName = "stackback"; + version = "0.0.2"; + src = fetchurl { + url = "https://registry.npmjs.org/stackback/-/stackback-0.0.2.tgz"; + sha512 = "1XMJE5fQo1jGH6Y/7ebnwPOBEkIEnT4QF32d5R1+VXdXveM0IBMJt8zfaxX1P3QhVwrYe+576+jkANtSS2mBbw=="; + }; + }; "stackframe-1.3.4" = { name = "stackframe"; packageName = "stackframe"; @@ -52137,6 +53145,15 @@ let sha512 = "RwNA9Z/7PrK06rYLIzFMlaF+l73iwpzsqRIFgbMLbTcLD6cOao82TaWefPXQvB2fOC4AjuYSEndS7N/mTCbkdQ=="; }; }; + "std-env-3.7.0" = { + name = "std-env"; + packageName = "std-env"; + version = "3.7.0"; + src = fetchurl { + url = "https://registry.npmjs.org/std-env/-/std-env-3.7.0.tgz"; + sha512 = "JPbdCEQLj1w5GilpiHAx3qJvFndqybBysA3qUOnznweH4QbNYUsW/ea8QzSrnh0vNsezMMw5bcVool8lM0gwzg=="; + }; + }; "stdin-discarder-0.1.0" = { name = "stdin-discarder"; packageName = "stdin-discarder"; @@ -52164,6 +53181,15 @@ let sha512 = "EEHMVYHNXFHfGtgjNITnka0aHhiAlo93F7z2/Pwd+g0teG9CnM3JIINM7hVVB5/rhw9voufD7Wukwgtw2uqh6w=="; }; }; + "steno-4.0.2" = { + name = "steno"; + packageName = "steno"; + version = "4.0.2"; + src = fetchurl { + url = "https://registry.npmjs.org/steno/-/steno-4.0.2.tgz"; + sha512 = "yhPIQXjrlt1xv7dyPQg2P17URmXbuM5pdGkpiMB3RenprfiBlvK415Lctfe0eshk90oA7/tNq7WEiMK8RSP39A=="; + }; + }; "stop-iteration-iterator-1.0.0" = { name = "stop-iteration-iterator"; packageName = "stop-iteration-iterator"; @@ -52299,15 +53325,6 @@ let sha512 = "bJ/HgKq41nlKvlhccD5kaCr/P+Hu0wPNKPJOH7en+YrJu/9EgqUF+88w5Jb6KNcjOFMhfX4B2asfeAtIGuHObQ=="; }; }; - "stream-promise-3.2.0" = { - name = "stream-promise"; - packageName = "stream-promise"; - version = "3.2.0"; - src = fetchurl { - url = "https://registry.npmjs.org/stream-promise/-/stream-promise-3.2.0.tgz"; - sha512 = "P+7muTGs2C8yRcgJw/PPt61q7O517tDHiwYEzMWo1GSBCcZedUMT/clz7vUNsSxFphIlJ6QUL4GexQKlfJoVtA=="; - }; - }; "stream-shift-1.0.1" = { name = "stream-shift"; packageName = "stream-shift"; @@ -52416,13 +53433,13 @@ let sha512 = "Mcc5wHehp9aXz1ax6bZUyY5afg9u2rv5cqQI3mRrYkGC8rW2hM02jWuwjtL++LS5qinSyhj2QfLyNsuc+VsExg=="; }; }; - "streamx-2.15.5" = { + "streamx-2.15.6" = { name = "streamx"; packageName = "streamx"; - version = "2.15.5"; + version = "2.15.6"; src = fetchurl { - url = "https://registry.npmjs.org/streamx/-/streamx-2.15.5.tgz"; - sha512 = "9thPGMkKC2GctCzyCUjME3yR03x2xNo0GPKGkRw2UMYN+gqWa9uqpyNWhmsNCutU5zHmkUum0LsCRQTXUgUCAg=="; + url = "https://registry.npmjs.org/streamx/-/streamx-2.15.6.tgz"; + sha512 = "q+vQL4AAz+FdfT137VF69Cc/APqUbxy+MDOImRrMvchJpigHj9GksgDU2LYbO9rx7RX6osWgxJB2WxhYv4SZAw=="; }; }; "strict-uri-encode-1.1.0" = { @@ -52884,6 +53901,15 @@ let sha512 = "6fPc+R4ihwqP6N/aIv2f1gMH8lOVtWQHoqC4yK6oSDVVocumAsfCqjkXnqiYMhmMwS/mEHLp7Vehlt3ql6lEig=="; }; }; + "strip-literal-1.3.0" = { + name = "strip-literal"; + packageName = "strip-literal"; + version = "1.3.0"; + src = fetchurl { + url = "https://registry.npmjs.org/strip-literal/-/strip-literal-1.3.0.tgz"; + sha512 = "PugKzOsyXpArk0yWmUwqOZecSO0GH0bPoctLcqNDH9J04pVW3lflYE0ujElBGTloevcxF5MofAOZ7C5l2b+wLg=="; + }; + }; "strip-outer-1.0.1" = { name = "strip-outer"; packageName = "strip-outer"; @@ -52983,13 +54009,13 @@ let sha512 = "sBpcd5Hx7G6seo7b1LkpttvTz7ikD0LlH5RmdcBNb6fFR0Fl7LQwHDFr300q4cwUqi+IYrFGmsIHieMBfnN/Bw=="; }; }; - "stylehacks-6.0.0" = { + "stylehacks-6.0.2" = { name = "stylehacks"; packageName = "stylehacks"; - version = "6.0.0"; + version = "6.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/stylehacks/-/stylehacks-6.0.0.tgz"; - sha512 = "+UT589qhHPwz6mTlCLSt/vMNTJx8dopeJlZAlBMJPWA3ORqu6wmQY7FBXf+qD+FsqoBJODyqNxOUP3jdntFRdw=="; + url = "https://registry.npmjs.org/stylehacks/-/stylehacks-6.0.2.tgz"; + sha512 = "00zvJGnCu64EpMjX8b5iCZ3us2Ptyw8+toEkb92VdmkEaRaSGBNKAoK6aWZckhXxmQP8zWiTaFaiMGIU8Ve8sg=="; }; }; "stylelint-13.13.1" = { @@ -53001,13 +54027,13 @@ let sha512 = "Mv+BQr5XTUrKqAXmpqm6Ddli6Ief+AiPZkRsIrAoUKFuq/ElkUh9ZMYxXD0iQNZ5ADghZKLOWz1h7hTClB7zgQ=="; }; }; - "stylis-4.3.0" = { + "stylis-4.3.1" = { name = "stylis"; packageName = "stylis"; - version = "4.3.0"; + version = "4.3.1"; src = fetchurl { - url = "https://registry.npmjs.org/stylis/-/stylis-4.3.0.tgz"; - sha512 = "E87pIogpwUsUwXw7dNyU4QDjdgVMy52m+XEOPEKUn161cCzWjjhPSQhByfd1CcNvrOLnXQ6OnnZDwnJrz/Z4YQ=="; + url = "https://registry.npmjs.org/stylis/-/stylis-4.3.1.tgz"; + sha512 = 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- version = "6.1.0"; - src = fetchurl { - url = "https://registry.npmjs.org/supports-color/-/supports-color-6.1.0.tgz"; - sha512 = "qe1jfm1Mg7Nq/NSh6XE24gPXROEVsWHxC1LIx//XNlD9iw7YZQGjZNjYN7xGaEG6iKdA8EtNFW6R0gjnVXp+wQ=="; - }; - }; "supports-color-7.2.0" = { name = "supports-color"; packageName = "supports-color"; @@ -53244,40 +54261,40 @@ let sha512 = "vzSyuGr3eEoAtT/A6bmajosJZIUWySzY2CzB3w2pgPvnkUjGqlDnsNnA0PMO+mMAhuyMul6C2uuZzY6ELSkzyA=="; }; }; - "svelte-4.2.7" = { + "svelte-4.2.8" = { name = "svelte"; packageName = "svelte"; - version = "4.2.7"; + version = "4.2.8"; src = fetchurl { - url = "https://registry.npmjs.org/svelte/-/svelte-4.2.7.tgz"; - sha512 = "UExR1KS7raTdycsUrKLtStayu4hpdV3VZQgM0akX8XbXgLBlosdE/Sf3crOgyh9xIjqSYB3UEBuUlIQKRQX2hg=="; + url = "https://registry.npmjs.org/svelte/-/svelte-4.2.8.tgz"; + sha512 = "hU6dh1MPl8gh6klQZwK/n73GiAHiR95IkFsesLPbMeEZi36ydaXL/ZAb4g9sayT0MXzpxyZjR28yderJHxcmYA=="; }; }; - "svelte-5.0.0-next.9" = { + "svelte-5.0.0-next.29" = { name = "svelte"; packageName = "svelte"; - version = "5.0.0-next.9"; + version = "5.0.0-next.29"; src = fetchurl { - url = "https://registry.npmjs.org/svelte/-/svelte-5.0.0-next.9.tgz"; - sha512 = "IX41fQvu56U1XHR1oMaq8S5B23HWK2j4jvcZv4+85xO9xpRoT9i7cX7K272USUgsjzYqCp3I/w5dg6Xrx51aWQ=="; + url = "https://registry.npmjs.org/svelte/-/svelte-5.0.0-next.29.tgz"; + sha512 = "YO1LZH41YzVgSXlLVLu/rqhNjMTY6Exh85rjOIhu56B2uNzFrDkQ7unz9rCR4ln4I8Y6vMSIEe+BwTIvjnWU1A=="; }; }; - "svelte-preprocess-5.1.0" = { + "svelte-preprocess-5.1.3" = { name = "svelte-preprocess"; packageName = "svelte-preprocess"; - version = "5.1.0"; + version = "5.1.3"; src = fetchurl { - url = "https://registry.npmjs.org/svelte-preprocess/-/svelte-preprocess-5.1.0.tgz"; - sha512 = "EkErPiDzHAc0k2MF5m6vBNmRUh338h2myhinUw/xaqsLs7/ZvsgREiLGj03VrSzbY/TB5ZXgBOsKraFee5yceA=="; + url = "https://registry.npmjs.org/svelte-preprocess/-/svelte-preprocess-5.1.3.tgz"; + sha512 = 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"T+Xul3JwuJ6VGXKo/p2ndqx1ibxNKnLTvRc1ZTWKCfyKS/GgNjRZcYsK84fxTsy/izr91g/Rwx6fGnVgaFSI5g=="; + url = "https://registry.npmjs.org/svgo/-/svgo-3.2.0.tgz"; + sha512 = "4PP6CMW/V7l/GmKRKzsLR8xxjdHTV4IMvhTnpuHwwBazSIlw5W/5SmPjN8Dwyt7lKbSJrRDgp4t9ph0HgChFBQ=="; }; }; "swagger2openapi-7.0.8" = { @@ -53415,13 +54432,13 @@ let sha512 = "ulAk51I9UVUyJgxlv9M6lFot2WP3e7t8Kz9+IS6D4rVba1tR9kON+Ey69f+1R4Q8cd45Lod6a4IcJIxnzGc/zA=="; }; }; - "systeminformation-5.21.17" = { + "systeminformation-5.21.22" = { name = "systeminformation"; packageName = "systeminformation"; - version = "5.21.17"; + version = "5.21.22"; src = fetchurl { - url = "https://registry.npmjs.org/systeminformation/-/systeminformation-5.21.17.tgz"; - sha512 = "JZYRCbIjk3WuBV59A9/rTla2rROX+aAJ9uo2Z1dI+bjieORcukClN8rlM1zE9NYKpULSbaGc+KKct/870lO0DA=="; + url = "https://registry.npmjs.org/systeminformation/-/systeminformation-5.21.22.tgz"; + sha512 = "gNHloAJSyS+sKWkwvmvozZ1eHrdVTEsynWMTY6lvLGBB70gflkBQFw8drXXr1oEXY84+Vr9tOOrN8xHZLJSycA=="; }; }; "sywac-1.3.0" = { @@ -53470,13 +54487,22 @@ let sha256 = "c824206b33da96cf5c01c21f1b133a0e3568e07ee4dcc9beefa8226864cd0272"; }; }; - "tailwindcss-3.3.5" = { + "tailwindcss-3.3.7" = { name = "tailwindcss"; packageName = "tailwindcss"; - version = "3.3.5"; + version = "3.3.7"; src = fetchurl { - url = "https://registry.npmjs.org/tailwindcss/-/tailwindcss-3.3.5.tgz"; - sha512 = "5SEZU4J7pxZgSkv7FP1zY8i2TIAOooNZ1e/OGtxIEv6GltpoiXUqWvLy89+a10qYTB1N5Ifkuw9lqQkN9sscvA=="; + url = "https://registry.npmjs.org/tailwindcss/-/tailwindcss-3.3.7.tgz"; + sha512 = "pjgQxDZPvyS/nG3ZYkyCvsbONJl7GdOejfm24iMt2ElYQQw8Jc4p0m8RdMp7mznPD0kUhfzwV3zAwa80qI0zmQ=="; + }; + }; + "tailwindcss-3.4.1" = { + name = "tailwindcss"; + packageName = "tailwindcss"; + version = "3.4.1"; + src = fetchurl { + url = "https://registry.npmjs.org/tailwindcss/-/tailwindcss-3.4.1.tgz"; + sha512 = "qAYmXRfk3ENzuPBakNK0SRrUDipP8NQnEY6772uDhflcQz5EhRdD7JNZxyrFHVQNCwULPBn6FNPp9brpO7ctcA=="; }; }; "tapable-0.2.9" = { @@ -53803,22 +54829,22 @@ let sha512 = "flFL3m4wuixmf6IfhFJd1YPiLiMuxEc8uHRM1buzIeZPm22Au2pDqBJQgdo7n1WfPU1ONFGv7YDwpFBmHGF6lg=="; }; }; - "terser-5.24.0" = { + "terser-5.26.0" = { name = "terser"; packageName = "terser"; - version = "5.24.0"; + version = "5.26.0"; src = fetchurl { - url = "https://registry.npmjs.org/terser/-/terser-5.24.0.tgz"; - sha512 = "ZpGR4Hy3+wBEzVEnHvstMvqpD/nABNelQn/z2r0fjVWGQsN3bpOLzQlqDxmb4CDZnXq5lpjnQ+mHQLAOpfM5iw=="; + url = "https://registry.npmjs.org/terser/-/terser-5.26.0.tgz"; + sha512 = "dytTGoE2oHgbNV9nTzgBEPaqAWvcJNl66VZ0BkJqlvp71IjO8CxdBx/ykCNb47cLnCmCvRZ6ZR0tLkqvZCdVBQ=="; }; }; - "terser-webpack-plugin-5.3.9" = { + "terser-webpack-plugin-5.3.10" = { name = "terser-webpack-plugin"; packageName = "terser-webpack-plugin"; - version = "5.3.9"; + version = "5.3.10"; src = fetchurl { - url = "https://registry.npmjs.org/terser-webpack-plugin/-/terser-webpack-plugin-5.3.9.tgz"; - sha512 = "ZuXsqE07EcggTWQjXUj+Aot/OMcD0bMKGgF63f7UxYcu5/AJF53aIpK1YoP5xR9l6s/Hy2b+t1AM0bLNPRuhwA=="; + url = "https://registry.npmjs.org/terser-webpack-plugin/-/terser-webpack-plugin-5.3.10.tgz"; + sha512 = "BKFPWlPDndPs+NGGCr1U59t0XScL5317Y0UReNrHaw9/FwhPENlq6bfgs+4yPfyP51vqC1bQ4rp1EfXW5ZSH9w=="; }; }; "test-exclude-6.0.0" = { @@ -53884,22 +54910,22 @@ let sha512 = "yJmVbmyuUPOndKsxOijpx/G7mwybXXf4M10U2up0BeIZSN+6drUl+aSKAoC+RUHY7bG4ogLwRcmWoNG1lSrRIQ=="; }; }; - "textlint-rule-helper-2.3.0" = { + "textlint-rule-helper-2.3.1" = { name = "textlint-rule-helper"; packageName = "textlint-rule-helper"; - version = "2.3.0"; + version = "2.3.1"; src = fetchurl { - url = "https://registry.npmjs.org/textlint-rule-helper/-/textlint-rule-helper-2.3.0.tgz"; - sha512 = "Ug78Saahb/qVImttL0NSFyT5/JJ5wXvOPepR2pYAjNi54BsQAAz/hAyyEgKuYeR0+yjFb0KPhby4f880X5vqHA=="; + url = "https://registry.npmjs.org/textlint-rule-helper/-/textlint-rule-helper-2.3.1.tgz"; + sha512 = "b1bijvyiUmKinfFE5hkQMSXs3Ky8jyZ3Y6SOoTRJKV9HLL2LWUVFAUezO7z4FpAkVvYruDYWCwA5qWV8GmvyUw=="; }; }; - "textlint-util-to-string-3.3.2" = { + "textlint-util-to-string-3.3.4" = { name = "textlint-util-to-string"; packageName = "textlint-util-to-string"; - version = "3.3.2"; + version = "3.3.4"; src = fetchurl { - url = "https://registry.npmjs.org/textlint-util-to-string/-/textlint-util-to-string-3.3.2.tgz"; - sha512 = "TCnHX5xGDWIGQpcusLrctodid+n5t5G6ft9+KAVad+GmrOOkk9IiPej8FwH9Vq/uk1j44yTB20YYja0YnQ+z/w=="; + url = "https://registry.npmjs.org/textlint-util-to-string/-/textlint-util-to-string-3.3.4.tgz"; + sha512 = "XF4Qfw0ES+czKy03BwuvBUoXC8NAg920VuRxW0pd72fW76zMeMbPI/bRN5PHq3SbCdOm7U69/Pk+DX34xqIYqA=="; }; }; "thelounge-3.3.0" = { @@ -53992,15 +55018,6 @@ let sha512 = "IdMH1bUkVJdJjM7o8v83Mv4QvVPdkAofur20STl2Bbw9uMuuS/bT/PZURkEdZsy9XC/1ZXWgZ1wIL9nvouGaEg=="; }; }; - "throat-5.0.0" = { - name = "throat"; - packageName = "throat"; - version = "5.0.0"; - src = fetchurl { - url = "https://registry.npmjs.org/throat/-/throat-5.0.0.tgz"; - sha512 = "fcwX4mndzpLQKBS1DVYhGAcYaYt7vsHNIvQV+WXMvnow5cgjPphq5CaayLaGsjRdSCKZFNGt7/GYAuXaNOiYCA=="; - }; - }; "throat-6.0.2" = { name = "throat"; packageName = "throat"; @@ -54163,15 +55180,6 @@ let sha512 = "PIxwAupJZiYU4JmVZYwXp9FKsHMXb5h0ZEFyuXTAn8WLHOlcij+FEcbrvDsom1o5dr1YggEtFbECvGCW2sT53Q=="; }; }; - "timers-ext-0.1.7" = { - name = "timers-ext"; - packageName = "timers-ext"; - version = "0.1.7"; - src = fetchurl { - url = "https://registry.npmjs.org/timers-ext/-/timers-ext-0.1.7.tgz"; - sha512 = "b85NUNzTSdodShTIbky6ZF02e8STtVVfD+fu4aXXShEELpozH+bCpJLYMPZbsABN2wDH7fJpqIoXxJpzbf0NqQ=="; - }; - }; "timm-1.7.1" = { name = "timm"; packageName = "timm"; @@ -54190,6 +55198,15 @@ let sha512 = "qsdtZH+vMoCARQtyod4imc2nIJwg9Cc7lPRrw9CzF8ZKR0khdr8+2nX80PBhET3tcyTtJDxAffGh2rXH4tyU8A=="; }; }; + "tinybench-2.5.1" = { + name = "tinybench"; + packageName = "tinybench"; + version = "2.5.1"; + src = fetchurl { + url = "https://registry.npmjs.org/tinybench/-/tinybench-2.5.1.tgz"; + sha512 = "65NKvSuAVDP/n4CqH+a9w2kTlLReS9vhsAP06MWx+/89nMinJyB2icyl58RIcqCmIggpojIGeuJGhjU1aGMBSg=="; + }; + }; "tinycolor-0.0.1" = { name = "tinycolor"; packageName = "tinycolor"; @@ -54217,6 +55234,33 @@ let sha512 = "8nIfc2vgQ4TeLnk2lFj4tRLvvJwEfQuabdsmvDdQPT0xlk9TaNtpGd6nNRxXoK6vQhN6RSzj+Cnp5tTQmpxmbw=="; }; }; + "tinypool-0.7.0" = { + name = "tinypool"; + packageName = "tinypool"; + version = "0.7.0"; + src = fetchurl { + url = "https://registry.npmjs.org/tinypool/-/tinypool-0.7.0.tgz"; + sha512 = "zSYNUlYSMhJ6Zdou4cJwo/p7w5nmAH17GRfU/ui3ctvjXFErXXkruT4MWW6poDeXgCaIBlGLrfU6TbTXxyGMww=="; + }; + }; + "tinypool-0.8.1" = { + name = "tinypool"; + packageName = "tinypool"; + version = "0.8.1"; + src = fetchurl { + url = "https://registry.npmjs.org/tinypool/-/tinypool-0.8.1.tgz"; + sha512 = "zBTCK0cCgRROxvs9c0CGK838sPkeokNGdQVUUwHAbynHFlmyJYj825f/oRs528HaIJ97lo0pLIlDUzwN+IorWg=="; + }; + }; + "tinyspy-2.2.0" = { + name = "tinyspy"; + packageName = "tinyspy"; + version = "2.2.0"; + src = fetchurl { + url = "https://registry.npmjs.org/tinyspy/-/tinyspy-2.2.0.tgz"; + sha512 = "d2eda04AN/cPOR89F7Xv5bK/jrQEhmcLFe6HFldoeO9AJtps+fqEnh486vnT/8y4bw38pSyxDcTCAq+Ks2aJTg=="; + }; + }; "titleize-3.0.0" = { name = "titleize"; packageName = "titleize"; @@ -54514,6 +55558,15 @@ let sha512 = "F+3tYmXnpO2gyhZQ7o8yakELJH3FtKISI/FU0iWvchOWFUXiFnjbEBoumSzfcK1P71Qxzx2az4lVK4Dkq4KSew=="; }; }; + "totalist-3.0.1" = { + name = "totalist"; + packageName = "totalist"; + version = "3.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/totalist/-/totalist-3.0.1.tgz"; + sha512 = "sf4i37nQ2LBx4m3wB74y+ubopq6W/dIzXg0FDGjsYnZHVa1Da8FH853wlL2gtUhg+xJXjfk3kUZS3BRoQeoQBQ=="; + }; + }; "touch-3.1.0" = { name = "touch"; packageName = "touch"; @@ -54586,6 +55639,15 @@ let sha512 = "2lv/66T7e5yNyhAAC4NaKe5nVavzuGJQVVtRYLyQ2OI8tsJ61PMLlelehb0wi2Hx6+hT/OJUWZcw8MjlSRnxvw=="; }; }; + "tr46-5.0.0" = { + name = "tr46"; + packageName = "tr46"; + version = "5.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/tr46/-/tr46-5.0.0.tgz"; + sha512 = "tk2G5R2KRwBd+ZN0zaEXpmzdKyOYksXwywulIX95MBODjSzMIuQnQ3m8JxgbhnL1LeVo7lqQKsYa1O3Htl7K5g=="; + }; + }; "trash-8.1.1" = { name = "trash"; packageName = "trash"; @@ -54604,13 +55666,13 @@ let sha512 = "iawgk0hLP3SxGKDfnDJf8wTz4p2qImnyihM5Hh/sGvQ3K37dPi/w8sRhdNIxYA1TwFwc5mDhIJq+O0RsvXBKdQ=="; }; }; - "traverse-0.6.7" = { + "traverse-0.6.8" = { name = "traverse"; packageName = "traverse"; - version = "0.6.7"; + version = "0.6.8"; src = fetchurl { - url = "https://registry.npmjs.org/traverse/-/traverse-0.6.7.tgz"; - sha512 = "/y956gpUo9ZNCb99YjxG7OaslxZWHfCHAUUfshwqOXmxUIvqLjVO581BT+gM59+QV9tFe6/CGG53tsA1Y7RSdg=="; + url = "https://registry.npmjs.org/traverse/-/traverse-0.6.8.tgz"; + sha512 = 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"https://registry.npmjs.org/tsconfig-paths/-/tsconfig-paths-3.14.2.tgz"; - sha512 = "o/9iXgCYc5L/JxCHPe3Hvh8Q/2xm5Z+p18PESBU6Ff33695QnCHBEjcytY2q19ua7Mbl/DavtBOLq+oG0RCL+g=="; + url = "https://registry.npmjs.org/tsconfig-paths/-/tsconfig-paths-3.15.0.tgz"; + sha512 = "2Ac2RgzDe/cn48GvOe3M+o82pEFewD3UPbyoUHHdKasHwJKjds4fLXWf/Ux5kATBKN20oaFGu+jbElp1pos0mg=="; }; }; "tsconfig-paths-4.2.0" = { @@ -55036,13 +56107,13 @@ let sha512 = "vwz9tfvF7XN/jE0dGoBei3FXWuvll78ohzCZQuOb+ZjWrs3a0XhQVomJEb2Qh4VHTPNRO4GPZh0V7VRbiWwkRg=="; }; }; - "tus-js-client-3.1.1" = { + "tus-js-client-3.1.3" = { name = "tus-js-client"; packageName = "tus-js-client"; - version = "3.1.1"; + version = "3.1.3"; src = fetchurl { - url = "https://registry.npmjs.org/tus-js-client/-/tus-js-client-3.1.1.tgz"; - sha512 = "SZzWP62jEFLmROSRZx+uoGLKqsYWMGK/m+PiNehPVWbCm7/S9zRIMaDxiaOcKdMnFno4luaqP5E+Y1iXXPjP0A=="; + url = "https://registry.npmjs.org/tus-js-client/-/tus-js-client-3.1.3.tgz"; + sha512 = 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"typescript-5.3.3" = { name = "typescript"; packageName = "typescript"; - version = "5.3.2"; + version = "5.3.3"; src = fetchurl { - url = "https://registry.npmjs.org/typescript/-/typescript-5.3.2.tgz"; - sha512 = "6l+RyNy7oAHDfxC4FzSJcz9vnjTKxrLpDG5M2Vu4SHRVNg6xzqZp6LYSR9zjqQTu8DU/f5xwxUdADOkbrIX2gQ=="; + url = "https://registry.npmjs.org/typescript/-/typescript-5.3.3.tgz"; + sha512 = "pXWcraxM0uxAS+tN0AG/BF2TyqmHO014Z070UsJ+pFvYuRSq8KH8DmWpnbXe0pEPDHXZV3FcAbJkijJ5oNEnWw=="; }; }; - "typescript-5.4.0-dev.20231121" = { + "typescript-5.4.0-dev.20240107" = { name = "typescript"; packageName = "typescript"; - version = "5.4.0-dev.20231121"; + version = "5.4.0-dev.20240107"; src = fetchurl { - url = "https://registry.npmjs.org/typescript/-/typescript-5.4.0-dev.20231121.tgz"; - sha512 = "/JUU1WLbuTBKfivcYHR+gvBAjMdhj1r2+flrnh8z7wdy2MDQgxRzSlfktNsbaqoYsOVolVDAPAoHpxVIvJlEgA=="; + url = "https://registry.npmjs.org/typescript/-/typescript-5.4.0-dev.20240107.tgz"; + sha512 = "6EfwZFaO82JLhOUsgQ3+c4lHuYS4WAQ6xBC767qWwJGf7BKYYeSFUkSptSkNhWOdeCEhdooudx22mkU8LphAPg=="; }; }; "typescript-auto-import-cache-0.2.1" = { @@ -55441,13 +56530,13 @@ let sha512 = "FD5uYQSNkVTX4b3lvtifP+SR3bARWGmKe/uyp5BfuW2ZUCYG7vHKPddrteLU06Uh68woRaYIX+Sbs2nnySpGLw=="; }; }; - "typescript-auto-import-cache-0.3.0" = { + "typescript-auto-import-cache-0.3.2" = { name = "typescript-auto-import-cache"; packageName = "typescript-auto-import-cache"; - version = "0.3.0"; + version = "0.3.2"; src = fetchurl { - url = "https://registry.npmjs.org/typescript-auto-import-cache/-/typescript-auto-import-cache-0.3.0.tgz"; - sha512 = "Rq6/q4O9iyqUdjvOoyas7x/Qf9nWUMeqpP3YeTaLA+uECgfy5wOhfOS+SW/+fZ/uI/ZcKaf+2/ZhFzXh8xfofQ=="; + url = "https://registry.npmjs.org/typescript-auto-import-cache/-/typescript-auto-import-cache-0.3.2.tgz"; + sha512 = "+laqe5SFL1vN62FPOOJSUDTZxtgsoOXjneYOXIpx5rQ4UMiN89NAtJLpqLqyebv9fgQ/IMeeTX+mQyRnwvJzvg=="; }; }; "typescript-tslint-plugin-0.5.4" = { @@ -55513,6 +56602,15 @@ let sha512 = "8Y75pvTYkLJW2hWQHXxoqRgV7qb9B+9vFEtidML+7koHUFapnVJAZ6cKs+Qjz5Aw3aZWHMC6u0wJE3At+nSGwA=="; }; }; + "ufo-1.3.2" = { + name = "ufo"; + packageName = "ufo"; + version = "1.3.2"; + src = fetchurl { + url = "https://registry.npmjs.org/ufo/-/ufo-1.3.2.tgz"; + sha512 = "o+ORpgGwaYQXgqGDwd+hkS4PuZ3QnmqMMxRuajK/a38L6fTpcE5GPIfrf+L/KemFzfUpeUQc1rRS1iDBozvnFA=="; + }; + }; "uglify-js-2.8.29" = { name = "uglify-js"; packageName = "uglify-js"; @@ -55747,13 +56845,13 @@ let sha512 = "cSb4bPFd5qgR7qr2jYAi0hlX9n5YKK2ONKkLFkxl+v/9BvC0sOpZjBHDBSXc5lWAf5ty9oZdRXytBIHzgUcerw=="; }; }; - "undici-5.27.2" = { + "undici-5.28.2" = { name = "undici"; packageName = "undici"; - version = "5.27.2"; + version = "5.28.2"; src = fetchurl { - url = "https://registry.npmjs.org/undici/-/undici-5.27.2.tgz"; - sha512 = "iS857PdOEy/y3wlM3yRp+6SNQQ6xU0mmZcwRSriqk+et/cwWAtwmIGf6WkoDN2EK/AMdCO/dfXzIwi+rFMrjjQ=="; + url = "https://registry.npmjs.org/undici/-/undici-5.28.2.tgz"; + sha512 = 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url = "https://registry.npmjs.org/unicorn-magic/-/unicorn-magic-0.1.0.tgz"; + sha512 = "lRfVq8fE8gz6QMBuDM6a+LO3IAzTi05H6gCVaUpir2E1Rwpo4ZUog45KpNXKC/Mn3Yb9UDuHumeFTo9iV/D9FQ=="; + }; + }; "unified-10.1.2" = { name = "unified"; packageName = "unified"; @@ -55891,13 +56989,13 @@ let sha512 = "5+JDIs4hqKfHnJcVCxTid1yBoI/++FfF/1PFdSMpaftZZZY+qg2JFruRbf7PaIwa9KgLotXQV3gSjtY0IdcFGQ=="; }; }; - "unified-engine-11.1.1" = { + "unified-engine-11.2.0" = { name = "unified-engine"; packageName = "unified-engine"; - version = "11.1.1"; + version = "11.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/unified-engine/-/unified-engine-11.1.1.tgz"; - sha512 = "uVx/R+Q8V5wv5EPdPzBPPscSKpbqWeqqIc0lMfDcn3aS+QDENTpDY+wdPQ5oswuQSpPn/miuP0FspIwo19++IA=="; + url = "https://registry.npmjs.org/unified-engine/-/unified-engine-11.2.0.tgz"; + sha512 = "H9wEDpBSM0cpEUuuYAOIiPzLCVN0pjASZZ6FFNzgzYS/HHzl9tArk/ereOMGtcF8m8vgjzw+HrU3YN7oenT7Ww=="; }; }; "unified-lint-rule-1.0.6" = { @@ -56638,6 +57736,15 @@ let sha512 = "EDxhTEVPZZRLWYcJ4ZXjGFN0oP7qYvbXWzEgRm/Yql4dHX5wDbvh89YHP6PK1lzZJYrMtXUuZZz8XGK+U6U1og=="; }; }; + "update-notifier-7.0.0" = { + name = "update-notifier"; + packageName = "update-notifier"; + version = "7.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/update-notifier/-/update-notifier-7.0.0.tgz"; + sha512 = "Hv25Bh+eAbOLlsjJreVPOs4vd51rrtCrmhyOJtbpAojro34jS4KQaEp4/EvlHJX7jSO42VvEFpkastVyXyIsdQ=="; + }; + }; "upnp-device-client-1.0.2" = { name = "upnp-device-client"; packageName = "upnp-device-client"; @@ -56836,6 +57943,15 @@ let sha512 = "KMWqdlOcjCYdtIJpicDSFBQ8nFwS2i9sslAd6f4+CBGcU4gist2REnr2fxj2YocvJFxSF3ZOHLYLVZnUxv4BZQ=="; }; }; + "userhome-1.0.0" = { + name = "userhome"; + packageName = "userhome"; + version = "1.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/userhome/-/userhome-1.0.0.tgz"; + sha512 = "ayFKY3H+Pwfy4W98yPdtH1VqH4psDeyW8lYYFzfecR9d6hqLpqhecktvYR3SEEXt7vG0S1JEpciI3g94pMErig=="; + }; + }; "username-5.1.0" = { name = "username"; packageName = "username"; @@ -57106,15 +58222,6 @@ let sha512 = "+g8ENReyr8YsOc6fv/NVJs2vFdHBnBNdfE49rshrTzDWOlUx4Gq7KOS2GD8eqhy2j+Ejq29+SbKH8yjkAqXqoA=="; }; }; - "v8-compile-cache-2.3.0" = { - name = "v8-compile-cache"; - packageName = "v8-compile-cache"; - version = "2.3.0"; - src = fetchurl { - url = "https://registry.npmjs.org/v8-compile-cache/-/v8-compile-cache-2.3.0.tgz"; - sha512 = "l8lCEmLcLYZh4nbunNZvQCJc5pv7+RCwa8q/LdUx8u7lsWvPDKmpodJAJNwkAhJC//dFY48KuIEmjtd4RViDrA=="; - }; - }; "v8-compile-cache-2.4.0" = { name = "v8-compile-cache"; packageName = "v8-compile-cache"; @@ -57304,6 +58411,15 @@ let sha512 = "1IguabCfv5jGUwMg4d8V9Lf/yBxaUc1EXmRwHzV8pMSy6KUB0h7rh9gYU0ja+vOB7b5qygRwppqeL0cATrzLUw=="; }; }; + "vega-5.27.0" = { + name = "vega"; + packageName = "vega"; + version = "5.27.0"; + src = fetchurl { + url = "https://registry.npmjs.org/vega/-/vega-5.27.0.tgz"; + sha512 = "iYMQZYb2nlJBLCsUZ88pvun2sTcFcLE7GKJWisndLo+KYNMQIRePQ7X2FRuy8yvRRNxfO8XhjImh4OwxZvyYVA=="; + }; + }; "vega-canvas-1.2.7" = { name = "vega-canvas"; packageName = "vega-canvas"; @@ -57466,13 +58582,13 @@ let sha512 = "tyTlaaCpHN2Ik/PPKl/j9ThadBDjPtypqW1D7IsUSkzfoZ7RPlI2jwAaoj2C/YW5jFRbEOx3njmjogp48I5CvA=="; }; }; - "vega-scenegraph-4.11.1" = { + "vega-scenegraph-4.11.2" = { name = "vega-scenegraph"; packageName = "vega-scenegraph"; - version = "4.11.1"; + version = "4.11.2"; src = fetchurl { - url = "https://registry.npmjs.org/vega-scenegraph/-/vega-scenegraph-4.11.1.tgz"; - sha512 = "XXEy8zbLYATj6yuIz6PcSGxO/pob4DEYBHdwoN4tfB2Yz6/eModF0JJdlNsGWNxV27VO6EPtzpJEc5Ql/OOQNw=="; + url = "https://registry.npmjs.org/vega-scenegraph/-/vega-scenegraph-4.11.2.tgz"; + sha512 = "PXSvv/L7Ek+9mwOTPLpzgkXdfGCR+AcWV5aquPGrqCWoiIF49VJkKFNT1HWxj3RZJX0XKo2r7SuXvRBb9EJ1aA=="; }; }; "vega-selections-5.4.2" = { @@ -57502,13 +58618,13 @@ let sha512 = "z1qbgyX0Af2kQSGFbApwBbX2meenGvsoX8Nga8uyWN8VIbiySo/xqizz1KrP6NbB6R+x5egKmkjdnyNThPeEWA=="; }; }; - "vega-transforms-4.11.0" = { + "vega-transforms-4.11.1" = { name = "vega-transforms"; packageName = "vega-transforms"; - version = "4.11.0"; + version = "4.11.1"; src = fetchurl { - url = "https://registry.npmjs.org/vega-transforms/-/vega-transforms-4.11.0.tgz"; - sha512 = "BeDASz7s9pIFjcSBljJJb8Eg0to2VjU0DvS/UjCQQYtqlfmzz78/mZnHyC+mW06h58ZKN+1QrIfqTZ6uMB4ySw=="; + url = "https://registry.npmjs.org/vega-transforms/-/vega-transforms-4.11.1.tgz"; + sha512 = "DDbqEQnvy9/qEvv0bAKPqAuzgaNb7Lh2xKJFom2Yzx4tZHCl8dnKxC1lH9JnJlAMdtZuiNLPARUkf3pCNQ/olw=="; }; }; "vega-typings-1.0.1" = { @@ -57520,6 +58636,15 @@ let sha512 = "VYsezOoYU8lDWGX6m5g6+m48Icq5RhZ51ek4Gc2UJkz8WJpYlVeN81Ko/smQMLblcU5NTD4Ffu+Mb3EcnXpMZw=="; }; }; + "vega-typings-1.1.0" = { + name = "vega-typings"; + packageName = "vega-typings"; + version = "1.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/vega-typings/-/vega-typings-1.1.0.tgz"; + sha512 = "uI6RWlMiGRhsgmw/LzJtjCc0kwhw2f0JpyNMTAnOy90kE4e4CiaZN5nJp8S9CcfcBoPEZHc166AOn2SSNrKn3A=="; + }; + }; "vega-util-1.17.2" = { name = "vega-util"; packageName = "vega-util"; @@ -57538,6 +58663,15 @@ let sha512 = "RoWxuoEMI7xVQJhPqNeLEHCezudsf3QkVMhH5tCovBqwBADQGqq9iWyax3ZzdyX1+P3eBgm7cnLvpqtN2hU8kA=="; }; }; + "vega-view-5.12.0" = { + name = "vega-view"; + packageName = "vega-view"; + version = "5.12.0"; + src = fetchurl { + url = "https://registry.npmjs.org/vega-view/-/vega-view-5.12.0.tgz"; + sha512 = "T3GY7UJNVZGrCUrAmE/OCrkoJQyOT/2dCgXgy9EvDMVv/sdrn7o1TMKhSV18nIr0m5A7m4mgKwrmguAfROY85g=="; + }; + }; "vega-view-transforms-4.5.9" = { name = "vega-view-transforms"; packageName = "vega-view-transforms"; @@ -57799,13 +58933,22 @@ let sha512 = "NiibMgt6VJGJmyw7vtzhctDcfKch4e4n9TBeoWlirb7FMg9/1Ov9k+A5ZRAtywBpRPiyECvQRQllYM8dECegVA=="; }; }; - "vite-4.4.11" = { + "vite-4.4.12" = { name = "vite"; packageName = "vite"; - version = "4.4.11"; + version = "4.4.12"; src = fetchurl { - url = "https://registry.npmjs.org/vite/-/vite-4.4.11.tgz"; - sha512 = 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"vizion"; packageName = "vizion"; @@ -57925,13 +59104,13 @@ let sha512 = "RWkO/c/A7iXhHEy3OuEqkCqavDjpD4NF2Ca8vjai+ZtEYNeHrm1ybTnBYLP4Ft1uXvvaaVtYA9HrDjD6+CUONg=="; }; }; - "vscode-css-languageservice-6.2.10" = { + "vscode-css-languageservice-6.2.11" = { name = "vscode-css-languageservice"; packageName = "vscode-css-languageservice"; - version = "6.2.10"; + version = "6.2.11"; src = fetchurl { - url = "https://registry.npmjs.org/vscode-css-languageservice/-/vscode-css-languageservice-6.2.10.tgz"; - sha512 = "sYUZPku4mQ06AWGCbMyjv2tdR6juBW6hTbVPFwbJvNVzdtEfBioQOgkdXg7yMJNWnXkvWSU1FL2kb4Vxu5Cdyw=="; + url = "https://registry.npmjs.org/vscode-css-languageservice/-/vscode-css-languageservice-6.2.11.tgz"; + sha512 = "qn49Wa6K94LnizpVxmlYrcPf1Cb36gq1nNueW0COhi4shylXBzET5wuDbH8ZWQlJD0HM5Mmnn7WE9vQVVs+ULA=="; }; }; "vscode-emmet-helper-1.2.17" = { @@ -57952,15 +59131,6 @@ let sha512 = "mIb5VMXM5jI97HzCk2eadI1K//rCEZXte0wBqA7PGXsyJH4KTyJUaYk9MR+mbfpUl2vMi3HZw9GUOLGYLc6l5w=="; }; }; - "vscode-html-languageservice-5.0.7" = { - name = "vscode-html-languageservice"; - packageName = "vscode-html-languageservice"; - version = "5.0.7"; - src = fetchurl { - url = "https://registry.npmjs.org/vscode-html-languageservice/-/vscode-html-languageservice-5.0.7.tgz"; - sha512 = "jX+7/kUXrdOaRT8vqYR/jLxrGDib+Far8I7n/A6apuEl88k+mhIHZPwc6ezuLeiCKUCaLG4b0dqFwjVa7QL3/w=="; - }; - }; "vscode-html-languageservice-5.1.1" = { name = "vscode-html-languageservice"; packageName = "vscode-html-languageservice"; @@ -58276,15 +59446,6 @@ let sha512 = "X+8T3GoiwTVlJbicx/sIAF+yuJAqz8VvwJyoMVhwEMoEKE/fkDmrqUgDMyBECcM2A2frVZIUj5HI/ErRXCfOeA=="; }; }; - "vscode-languageserver-textdocument-1.0.8" = { - name = "vscode-languageserver-textdocument"; - packageName = "vscode-languageserver-textdocument"; - version = "1.0.8"; - src = fetchurl { - url = "https://registry.npmjs.org/vscode-languageserver-textdocument/-/vscode-languageserver-textdocument-1.0.8.tgz"; - sha512 = "1bonkGqQs5/fxGT5UchTgjGVnfysL0O8v1AYMBjqTbWQTFn721zaPGDYFkOKtfDgFiSgXM3KwaG3FMGfW4Ed9Q=="; - }; - }; "vscode-languageserver-types-3.14.0" = { name = "vscode-languageserver-types"; packageName = "vscode-languageserver-types"; @@ -58447,13 +59608,13 @@ let sha512 = "AyFQ0EVmsOZOlAnxoFOGOq1SQDWAB7C6aqMGS23svWAllfOaxbuFvcT8D1i8z3Gyn8fraVeZNNmN6e9bxxXkKw=="; }; }; - "vue-2.7.15" = { + "vue-2.7.16" = { name = "vue"; packageName = "vue"; - version = "2.7.15"; + version = "2.7.16"; src = fetchurl { - url = "https://registry.npmjs.org/vue/-/vue-2.7.15.tgz"; - sha512 = "a29fsXd2G0KMRqIFTpRgpSbWaNBK3lpCTOLuGLEDnlHWdjB8fwl6zyYZ8xCrqkJdatwZb4mGHiEfJjnw0Q6AwQ=="; + url = "https://registry.npmjs.org/vue/-/vue-2.7.16.tgz"; + sha512 = "4gCtFXaAA3zYZdTp5s4Hl2sozuySsgz4jy1EnpBHNfpMa9dK1ZCG7viqBPCwXtmgc8nHqUsAu3G4gtmXkkY3Sw=="; }; }; "vue-codemod-0.0.5" = { @@ -58501,13 +59662,13 @@ let sha512 = "q7tWyCVaV9f8iQyIA5Mkj/S6AoJ9KBN8IeUSf3XEmBrOtxOZnfTg5s4KClbZBCK3GtnT/+RyCLZyDHuZwTuBjg=="; }; }; - "vue-template-compiler-2.7.15" = { + "vue-template-compiler-2.7.16" = { name = "vue-template-compiler"; packageName = "vue-template-compiler"; - version = "2.7.15"; + version = "2.7.16"; src = fetchurl { - url = "https://registry.npmjs.org/vue-template-compiler/-/vue-template-compiler-2.7.15.tgz"; - sha512 = "yQxjxMptBL7UAog00O8sANud99C6wJF+7kgbcwqkvA38vCGF7HWE66w0ZFnS/kX5gSoJr/PQ4/oS3Ne2pW37Og=="; + url = "https://registry.npmjs.org/vue-template-compiler/-/vue-template-compiler-2.7.16.tgz"; + sha512 = "AYbUWAJHLGGQM7+cNTELw+KsOG9nl2CnSv467WobS5Cv9uk3wFcnr1Etsz2sEIHEZvw1U+o9mRlEO6QbZvUPGQ=="; }; }; "w3c-hr-time-1.0.2" = { @@ -58546,6 +59707,24 @@ let sha512 = "d+BFHzbiCx6zGfz0HyQ6Rg69w9k19nviJspaj4yNscGjrHu94sVP+aRm75yEbCh+r2/yR+7q6hux9LVtbuTGBw=="; }; }; + "w3c-xmlserializer-5.0.0" = { + name = "w3c-xmlserializer"; + packageName = "w3c-xmlserializer"; + version = "5.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/w3c-xmlserializer/-/w3c-xmlserializer-5.0.0.tgz"; + sha512 = "o8qghlI8NZHU1lLPrpi2+Uq7abh4GGPpYANlalzWxyWteJOCsr/P+oPBA49TOLu5FTZO4d3F9MnWJfiMo4BkmA=="; + }; + }; + "wait-port-1.1.0" = { + name = "wait-port"; + packageName = "wait-port"; + version = "1.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/wait-port/-/wait-port-1.1.0.tgz"; + sha512 = "3e04qkoN3LxTMLakdqeWth8nih8usyg+sf1Bgdf9wwUkp05iuK1eSY/QpLvscT/+F/gA89+LpUmmgBtesbqI2Q=="; + }; + }; "walk-2.3.15" = { name = "walk"; packageName = "walk"; @@ -58573,13 +59752,13 @@ let sha512 = "Lcvm7MGST/4fup+ifyKi2hjyIAwcdI4HRgtvTpIUxBRhB+RFtUh8XtDOxUfctVCnhVi+QQj49i91OyvzkJl6cg=="; }; }; - "wavedrom-3.3.0" = { + "wavedrom-3.4.0" = { name = "wavedrom"; packageName = "wavedrom"; - version = "3.3.0"; + version = "3.4.0"; src = fetchurl { - url = "https://registry.npmjs.org/wavedrom/-/wavedrom-3.3.0.tgz"; - sha512 = "vhX9+X8qYVD/Yeb/ERWbCl52GMuWJI/6zhOZVPgb9H9nGOTfNJSXjB8akuhtGrQolSzQVAuJ2DABGrgT750Z/Q=="; + url = "https://registry.npmjs.org/wavedrom/-/wavedrom-3.4.0.tgz"; + sha512 = "UJZsl5z0KXrrmsuz++ejKS+yuKMupni4/swLN7hA3LL+kyCE1PuiO1VOTe9I/RMlkbM2XsH3u88itQMYjxHp9w=="; }; }; "wbuf-1.7.3" = { @@ -58663,13 +59842,13 @@ let sha512 = "2njbTqZ6Q7ZqqK14YpK1GGmaZs3NmuGYF5b7abCXulUIWFSlSYcZ3NBJQRFcMiQDceD7vQknb8FUuvI1F7Qe/g=="; }; }; - "web-streams-polyfill-3.2.1" = { + "web-streams-polyfill-3.3.2" = { name = "web-streams-polyfill"; packageName = "web-streams-polyfill"; - version = "3.2.1"; + version = "3.3.2"; src = fetchurl { - url = "https://registry.npmjs.org/web-streams-polyfill/-/web-streams-polyfill-3.2.1.tgz"; - sha512 = "e0MO3wdXWKrLbL0DgGnUV7WHVuw9OUvL4hjgnPkIeEvESk74gAITi5G606JtZPp39cd8HA9VQzCIvA49LpPN5Q=="; + url = "https://registry.npmjs.org/web-streams-polyfill/-/web-streams-polyfill-3.3.2.tgz"; + sha512 = "3pRGuxRF5gpuZc0W+EpwQRmCD7gRqcDOMt688KmdlDAgAyaB1XlN0zq2njfDNm44XVdIouE7pZ6GzbdyH47uIQ=="; }; }; "web-tree-sitter-0.20.5" = { @@ -58699,13 +59878,13 @@ let sha512 = "6BjspCO9VriYy12z356nL6JBS0GYeEcA457YyRzD+dD6XYCQ75NKhcOHUMHentOE7OcVCIXXDvOm0jKFfQG2Gg=="; }; }; - "web-worker-1.2.0" = { + "web-worker-1.3.0" = { name = "web-worker"; packageName = "web-worker"; - version = "1.2.0"; + version = "1.3.0"; src = fetchurl { - url = "https://registry.npmjs.org/web-worker/-/web-worker-1.2.0.tgz"; - sha512 = "PgF341avzqyx60neE9DD+XS26MMNMoUQRz9NOZwW32nPQrF6p77f1htcnjBSEV8BGMKZ16choqUG4hyI0Hx7mA=="; + url = "https://registry.npmjs.org/web-worker/-/web-worker-1.3.0.tgz"; + sha512 = "BSR9wyRsy/KOValMgd5kMyr3JzpdeoR9KVId8u5GVlTTAtNChlsE4yTxeY7zMdNSyOmoKBv8NH2qeRY9Tg+IaA=="; }; }; "web3-utils-1.10.3" = { @@ -58735,6 +59914,24 @@ let sha512 = "7FjigXNsBfopEj+5DV2nhNpfic2vumtjjgPmeDKk45z+MJwXKKfhPB7118Pfzrmh4jqOMST6Ch37iPAHoImg5g=="; }; }; + "webdriver-8.27.0" = { + name = "webdriver"; + packageName = "webdriver"; + version = "8.27.0"; + src = fetchurl { + url = "https://registry.npmjs.org/webdriver/-/webdriver-8.27.0.tgz"; + sha512 = "n1IA+rR3u84XxU9swiKUM06BkEC0GDimfZkBML57cny+utQOUbdM/mBpqCUnkWX/RBz/p2EfHdKNyOs3/REaog=="; + }; + }; + "webdriverio-8.27.0" = { + name = "webdriverio"; + packageName = "webdriverio"; + version = "8.27.0"; + src = fetchurl { + url = "https://registry.npmjs.org/webdriverio/-/webdriverio-8.27.0.tgz"; + sha512 = "Qh5VCiBjEmxnmXcL1QEFoDzFqTtaWKrXriuU5G0yHKCModGAt2G7IHTkAok3CpmkVJfZpEvY630aP1MvgDtFhw=="; + }; + }; "webidl-conversions-3.0.1" = { name = "webidl-conversions"; packageName = "webidl-conversions"; @@ -58906,13 +60103,22 @@ let sha512 = "p41ogyeMUrw3jWclHWTQg1k05DSVXPLcVxRTYsXUk+ZooOCZLcoYgPZ/HL/D/N+uQPOtcp1me1WhBEaX02mhWg=="; }; }; - "whatwg-fetch-3.6.19" = { + "whatwg-encoding-3.1.1" = { + name = "whatwg-encoding"; + packageName = "whatwg-encoding"; + version = "3.1.1"; + src = fetchurl { + url = "https://registry.npmjs.org/whatwg-encoding/-/whatwg-encoding-3.1.1.tgz"; + sha512 = "6qN4hJdMwfYBtE3YBTTHhoeuUrDBPZmbQaxWAqSALV/MeEnR5z1xd8UKud2RAkFoPkmB+hli1TZSnyi84xz1vQ=="; + }; + }; + "whatwg-fetch-3.6.20" = { name = "whatwg-fetch"; packageName = "whatwg-fetch"; - version = "3.6.19"; + version = "3.6.20"; src = fetchurl { - url = "https://registry.npmjs.org/whatwg-fetch/-/whatwg-fetch-3.6.19.tgz"; - sha512 = "d67JP4dHSbm2TrpFj8AbO8DnL1JXL5J9u0Kq2xW6d0TFDbCA3Muhdt8orXC22utleTVj7Prqt82baN6RBvnEgw=="; + url = "https://registry.npmjs.org/whatwg-fetch/-/whatwg-fetch-3.6.20.tgz"; + sha512 = "EqhiFU6daOA8kpjOWTL0olhVOF3i7OrFzSYiGsEMB8GcXS+RrzauAERX65xMeNWVqxA6HXH2m69Z9LaKKdisfg=="; }; }; "whatwg-mimetype-2.3.0" = { @@ -58933,6 +60139,15 @@ let sha512 = "nt+N2dzIutVRxARx1nghPKGv1xHikU7HKdfafKkLNLindmPU/ch3U31NOCGGA/dmPcmb1VlofO0vnKAcsm0o/Q=="; }; }; + "whatwg-mimetype-4.0.0" = { + name = "whatwg-mimetype"; + packageName = "whatwg-mimetype"; + version = "4.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/whatwg-mimetype/-/whatwg-mimetype-4.0.0.tgz"; + sha512 = "QaKxh0eNIi2mE9p2vEdzfagOKHCcj1pJ56EEHGQOVxp8r9/iszLUUV7v89x9O1p/T+NlTM5W7jW6+cz4Fq1YVg=="; + }; + }; "whatwg-url-12.0.1" = { name = "whatwg-url"; packageName = "whatwg-url"; @@ -58942,6 +60157,15 @@ let sha512 = "Ed/LrqB8EPlGxjS+TrsXcpUond1mhccS3pchLhzSgPCnTimUCKj3IZE75pAs5m6heB2U2TMerKFUXheyHY+VDQ=="; }; }; + "whatwg-url-14.0.0" = { + name = "whatwg-url"; + packageName = "whatwg-url"; + version = "14.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/whatwg-url/-/whatwg-url-14.0.0.tgz"; + sha512 = "1lfMEm2IEr7RIV+f4lUNPOqfFL+pO+Xw3fJSqmjX9AbXcXcYOkCe1P6+9VBZB6n94af16NfZf+sSk0JCBZC9aw=="; + }; + }; "whatwg-url-5.0.0" = { name = "whatwg-url"; packageName = "whatwg-url"; @@ -58969,13 +60193,13 @@ let sha512 = "gAojqb/m9Q8a5IV96E3fHJM70AzCkgt4uXYX2O7EmuyOnLrViCQlsEBmF9UQIu3/aeAIp2U17rtbpZWNntQqdg=="; }; }; - "when-exit-2.1.1" = { + "when-exit-2.1.2" = { name = "when-exit"; packageName = "when-exit"; - version = "2.1.1"; + version = "2.1.2"; src = fetchurl { - url = "https://registry.npmjs.org/when-exit/-/when-exit-2.1.1.tgz"; - sha512 = "XLipGldz/UcleuGaoQjbYuWwD+ICRnzIjlldtwTaTWr7aZz8yQW49rXk6MHQnh+KxOiWiJpM1vIyaxprOnlW4g=="; + url = "https://registry.npmjs.org/when-exit/-/when-exit-2.1.2.tgz"; + sha512 = "u9J+toaf3CCxCAzM/484qNAxQE75rFdVgiFEEV8Xps2gzYhf0tx73s1WXDQhkwV17E3MxRMz40m7Ekd2/121Lg=="; }; }; "whet.extend-0.9.9" = { @@ -59086,6 +60310,15 @@ let sha512 = "P5Nra0qjSncduVPEAr7xhoF5guty49ArDTwzJ/yNuPIbZppyRxFQsRCWrocxIY+CnMVG+qfbU2FmDKyvSGClow=="; }; }; + "why-is-node-running-2.2.2" = { + name = "why-is-node-running"; + packageName = "why-is-node-running"; + version = "2.2.2"; + src = fetchurl { + url = "https://registry.npmjs.org/why-is-node-running/-/why-is-node-running-2.2.2.tgz"; + sha512 = "6tSwToZxTOcotxHeA+qGCq1mVzKR3CwcJGmVcY+QE8SHy6TnpFnh8PAvPNHYr7EcuVeG0QSMxtYCuO1ta/G/oA=="; + }; + }; "wide-align-1.1.5" = { name = "wide-align"; packageName = "wide-align"; @@ -59347,13 +60580,13 @@ let sha512 = "rvw3QTZc8lAxyVrqcSGVm5yP/IJ2UcB3U0graE3LCFoZ0Yn2x4EoVSqJKdB/T5M+FLcRPjz4TDacRf3OCfNUzw=="; }; }; - "workerd-1.20231030.0" = { + "workerd-1.20231218.0" = { name = "workerd"; packageName = "workerd"; - version = "1.20231030.0"; + version = "1.20231218.0"; src = fetchurl { - url = "https://registry.npmjs.org/workerd/-/workerd-1.20231030.0.tgz"; - sha512 = "+FSW+d31f8RrjHanFf/R9A+Z0csf3OtsvzdPmAKuwuZm/5HrBv83cvG9fFeTxl7/nI6irUUXIRF9xcj/NomQzQ=="; + url = "https://registry.npmjs.org/workerd/-/workerd-1.20231218.0.tgz"; + sha512 = "AGIsDvqCrcwhoA9kb1hxOhVAe53/xJeaGZxL4FbYI9FvO17DZwrnqGq+6eqItJ6Cfw1ZLmf3BM+QdMWaL2bFWQ=="; }; }; "workerpool-6.2.1" = { @@ -59500,15 +60733,6 @@ let sha512 = "AvHcyZ5JnSfq3ioSyjrBkH9yW4m7Ayk8/9My/DD9onKeu/94fwrMocemO2QAJFAlnnDN+ZDS+ZjAR5ua1/PV/Q=="; }; }; - "write-file-atomic-4.0.2" = { - name = "write-file-atomic"; - packageName = "write-file-atomic"; - version = "4.0.2"; - src = fetchurl { - url = "https://registry.npmjs.org/write-file-atomic/-/write-file-atomic-4.0.2.tgz"; - sha512 = "7KxauUdBmSdWnmpaGFg+ppNjKF8uNLry8LyzjauQDOVONfFLNKrKvQOxZ/VuTIcS/gge/YNahf5RIIQWTSarlg=="; - }; - }; "write-file-atomic-5.0.1" = { name = "write-file-atomic"; packageName = "write-file-atomic"; @@ -59653,13 +60877,13 @@ let sha512 = "x9vcZYTrFPC7aSIbj7sRCYo7L/Xb8Iy+pW0ng0wt2vCJv7M9HOMy0UoN3rr+IFC7hb7vXoqS+P9ktyLLLhO+LA=="; }; }; - "ws-8.14.2" = { + "ws-8.16.0" = { name = "ws"; packageName = "ws"; - version = "8.14.2"; + version = "8.16.0"; src = fetchurl { - url = "https://registry.npmjs.org/ws/-/ws-8.14.2.tgz"; - sha512 = "wEBG1ftX4jcglPxgFCMJmZ2PLtSbJ2Peg6TmpJFTbe9GZYOQCDPdMYu/Tm0/bGZkw8paZnJY45J4K2PZrLYq8g=="; + url = "https://registry.npmjs.org/ws/-/ws-8.16.0.tgz"; + sha512 = "HS0c//TP7Ina87TfiPUz1rQzMhHrl/SG2guqRcTOIUYD2q8uhUdNHZYJUaQ8aTGPzCh+c6oawMKW35nFl1dxyQ=="; }; }; "ws-8.5.0" = { @@ -59815,6 +61039,15 @@ let sha512 = "ICP2e+jsHvAj2E2lIHxa5tjXRlKDJo4IdvPvCXbXQGdzSfmSpNVyIKMvoZHjDY9DP0zV17iI85o90vRFXNccRw=="; }; }; + "xml-name-validator-5.0.0" = { + name = "xml-name-validator"; + packageName = "xml-name-validator"; + version = "5.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/xml-name-validator/-/xml-name-validator-5.0.0.tgz"; + sha512 = "EvGK8EJ3DhaHfbRlETOWAS5pO9MZITeauHKJyb8wyajUfQUenkIg2MvLDTZ4T/TgIcm3HU0TFBgWWboAZ30UHg=="; + }; + }; "xml-parse-from-string-1.0.1" = { name = "xml-parse-from-string"; packageName = "xml-parse-from-string"; @@ -60113,15 +61346,6 @@ let sha512 = "8aAvwVUSHpfEqTQ4w/KMlf3HcRdt50E5ODIQJBw1fQ5RL34xabzxtUlzTXVqc4rkZsPbvrXKWnABCD7kWSmocA=="; }; }; - "yaml-ast-parser-0.0.43" = { - name = "yaml-ast-parser"; - packageName = "yaml-ast-parser"; - version = "0.0.43"; - src = fetchurl { - url = "https://registry.npmjs.org/yaml-ast-parser/-/yaml-ast-parser-0.0.43.tgz"; - sha512 = "2PTINUwsRqSd+s8XxKaJWQlUuEMHJQyEuh2edBbW8KNJz0SJPwUSD2zRWqezFEdN7IzAgeuYHFUCF7o8zRdZ0A=="; - }; - }; "yaml-front-matter-4.1.1" = { name = "yaml-front-matter"; packageName = "yaml-front-matter"; @@ -60194,6 +61418,15 @@ let sha512 = "c2k48R0PwKIqKhPMWjeiF6y2xY/gPMUlro0sgxqXpbOIohWiLNXWslsootttv7E1e73QPAMQSg5FeySbVcpsPQ=="; }; }; + "yargs-17.7.1" = { + name = "yargs"; + packageName = "yargs"; + version = "17.7.1"; + src = fetchurl { + url = "https://registry.npmjs.org/yargs/-/yargs-17.7.1.tgz"; + sha512 = "cwiTb08Xuv5fqF4AovYacTFNxk62th7LKJ6BL9IGUpTJrWoU7/7WdQGTP2SjKf1dUNBGzDd28p/Yfs/GI6JrLw=="; + }; + }; "yargs-17.7.2" = { name = "yargs"; packageName = "yargs"; @@ -60536,13 +61769,13 @@ let sha512 = "9qv4rlDiopXg4E69k+vMHjNN63YFMe9sZMrdlvKnCjlCRWeCBswPPMPUfx+ipsAWq1LXHe70RcbaHdJJpS6hyQ=="; }; }; - "zod-3.21.4" = { - name = "zod"; - packageName = "zod"; - version = "3.21.4"; + "zip-stream-5.0.1" = { + name = "zip-stream"; + packageName = "zip-stream"; + version = "5.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/zod/-/zod-3.21.4.tgz"; - sha512 = "m46AKbrzKVzOzs/DZgVnG5H55N1sv1M8qZU3A8RIKbs3mrACDNeIOeilDymVb2HdmP8uwshOCF4uJ8uM9rCqJw=="; + url = "https://registry.npmjs.org/zip-stream/-/zip-stream-5.0.1.tgz"; + sha512 = "UfZ0oa0C8LI58wJ+moL46BDIMgCQbnsb+2PoiJYtonhBsMh2bq1eRBVkvjfVsqbEHd9/EgKPUuL9saSSsec8OA=="; }; }; "zod-3.22.3" = { @@ -60572,6 +61805,15 @@ let sha512 = "fjUZh4nQ1s6HMccgIeE0VP4QG/YRGPmyjO9sAh890aQKPEk3nqbfUXhMFaC+Dr5KvYBm8BCyvfpZf2jY9aGSsw=="; }; }; + "zod-validation-error-1.3.1" = { + name = "zod-validation-error"; + packageName = "zod-validation-error"; + version = "1.3.1"; + src = fetchurl { + url = "https://registry.npmjs.org/zod-validation-error/-/zod-validation-error-1.3.1.tgz"; + sha512 = "cNEXpla+tREtNdAnNKY4xKY1SGOn2yzyuZMu4O0RQylX9apRpUjNcPkEc3uHIAr5Ct7LenjZt6RzjEH6+JsqVQ=="; + }; + }; "zwitch-1.0.5" = { name = "zwitch"; packageName = "zwitch"; @@ -60596,15 +61838,15 @@ in "@angular/cli" = nodeEnv.buildNodePackage { name = "_at_angular_slash_cli"; packageName = "@angular/cli"; - version = "17.0.2"; + version = "17.0.9"; src = fetchurl { - url = "https://registry.npmjs.org/@angular/cli/-/cli-17.0.2.tgz"; - sha512 = "ebKFDtyRZHLKqr1f8cOKDWVybNPfo5JVctRWCJ+FghVDQARl6gsZaJG4twkf3DIgBaSShtHK4JSjTrHtG2RWjg=="; + url = "https://registry.npmjs.org/@angular/cli/-/cli-17.0.9.tgz"; + sha512 = "a1rLAu3TNU5d56ozBnx9UZchJDKC8qMvZL4ThJhcaTUJb0Cj//gqLJdNdMcB0p1Ve9lmmAQ3J17+2Xij1u3sNg=="; }; dependencies = [ - sources."@angular-devkit/architect-0.1700.2" - sources."@angular-devkit/core-17.0.2" - sources."@angular-devkit/schematics-17.0.2" + sources."@angular-devkit/architect-0.1700.9" + sources."@angular-devkit/core-17.0.9" + sources."@angular-devkit/schematics-17.0.9" (sources."@isaacs/cliui-8.0.2" // { dependencies = [ sources."ansi-regex-6.0.1" @@ -60619,12 +61861,12 @@ in sources."@ljharb/through-2.3.11" sources."@npmcli/agent-2.2.0" sources."@npmcli/fs-3.1.0" - sources."@npmcli/git-5.0.3" + sources."@npmcli/git-5.0.4" sources."@npmcli/installed-package-contents-2.0.2" sources."@npmcli/node-gyp-3.0.0" - sources."@npmcli/promise-spawn-7.0.0" - sources."@npmcli/run-script-7.0.2" - sources."@schematics/angular-17.0.2" + sources."@npmcli/promise-spawn-7.0.1" + sources."@npmcli/run-script-7.0.3" + sources."@schematics/angular-17.0.9" sources."@sigstore/bundle-2.1.0" sources."@sigstore/protobuf-specs-0.2.1" sources."@sigstore/sign-2.2.0" @@ -60654,7 +61896,7 @@ in sources."braces-3.0.2" sources."buffer-5.7.1" sources."builtins-5.0.1" - sources."cacache-18.0.0" + sources."cacache-18.0.2" sources."call-bind-1.0.5" sources."chalk-5.3.0" sources."chardet-0.7.0" @@ -60662,7 +61904,7 @@ in sources."chownr-2.0.0" sources."clean-stack-2.2.0" sources."cli-cursor-3.1.0" - sources."cli-spinners-2.9.1" + sources."cli-spinners-2.9.2" sources."cli-width-4.1.0" (sources."cliui-8.0.1" // { dependencies = [ @@ -60718,7 +61960,7 @@ in sources."https-proxy-agent-7.0.2" sources."iconv-lite-0.4.24" sources."ieee754-1.2.1" - sources."ignore-walk-6.0.3" + sources."ignore-walk-6.0.4" sources."imurmurhash-0.1.4" sources."indent-string-4.0.0" sources."inherits-2.0.4" @@ -60738,7 +61980,7 @@ in sources."is-wsl-2.2.0" sources."isexe-3.1.1" sources."jackspeak-2.3.6" - sources."json-parse-even-better-errors-3.0.0" + sources."json-parse-even-better-errors-3.0.1" sources."json-schema-traverse-1.0.0" sources."jsonc-parser-3.2.0" sources."jsonparse-1.3.1" @@ -60749,17 +61991,13 @@ in sources."is-unicode-supported-0.1.0" ]; }) - sources."lru-cache-10.0.3" + sources."lru-cache-10.1.0" sources."magic-string-0.30.5" sources."make-fetch-happen-13.0.0" sources."mimic-fn-2.1.0" sources."minimatch-9.0.3" sources."minipass-7.0.4" - (sources."minipass-collect-1.0.2" // { - dependencies = [ - sources."minipass-3.3.6" - ]; - }) + sources."minipass-collect-2.0.1" sources."minipass-fetch-3.0.4" (sources."minipass-flush-1.0.5" // { dependencies = [ @@ -60798,7 +62036,7 @@ in sources."npm-install-checks-6.3.0" sources."npm-normalize-package-bin-3.0.1" sources."npm-package-arg-11.0.1" - sources."npm-packlist-8.0.0" + sources."npm-packlist-8.0.1" sources."npm-pick-manifest-9.0.0" sources."npm-registry-fetch-16.1.0" sources."onetime-5.1.2" @@ -60907,10 +62145,10 @@ in "@antfu/ni" = nodeEnv.buildNodePackage { name = "_at_antfu_slash_ni"; packageName = "@antfu/ni"; - version = "0.21.10"; + version = "0.21.12"; src = fetchurl { - url = "https://registry.npmjs.org/@antfu/ni/-/ni-0.21.10.tgz"; - sha512 = "EHIUsdIKeBYSoo4rtLNl0Myzp0aMaaJHnx0i5OK9Q4HoYd82z21CyOghz7HAOQOxYVPy+zzLOUmM+L4SA5V/tQ=="; + url = "https://registry.npmjs.org/@antfu/ni/-/ni-0.21.12.tgz"; + sha512 = "2aDL3WUv8hMJb2L3r/PIQWsTLyq7RQr3v9xD16fiz6O8ys1xEyLhhTOv8gxtZvJiTzjTF5pHoArvRdesGL1DMQ=="; }; buildInputs = globalBuildInputs; meta = { @@ -60925,13 +62163,13 @@ in "@astrojs/language-server" = nodeEnv.buildNodePackage { name = "_at_astrojs_slash_language-server"; packageName = "@astrojs/language-server"; - version = "2.5.2"; + version = "2.5.5"; src = fetchurl { - url = "https://registry.npmjs.org/@astrojs/language-server/-/language-server-2.5.2.tgz"; - sha512 = "O5SMzoQ65wSxA1KygreI9UJYmHpgt15bSYBxceHwqX7OCDM4Ek8mr6mZn45LGDtwM3dp1uup7kp8exfRPwIFbA=="; + url = "https://registry.npmjs.org/@astrojs/language-server/-/language-server-2.5.5.tgz"; + sha512 = "hk7a8S7bpf//BOA6mMjiYqi/eiYtGPfUfw59eVXdutdRFdwDHtu4jcsLu43ZaId56pAcE8qFjIvJxySvzcxiUA=="; }; dependencies = [ - sources."@astrojs/compiler-2.3.2" + sources."@astrojs/compiler-2.4.0" sources."@emmetio/abbreviation-2.3.3" sources."@emmetio/css-abbreviation-2.1.8" sources."@emmetio/scanner-1.0.4" @@ -60954,7 +62192,7 @@ in sources."braces-3.0.2" sources."emmet-2.4.6" sources."fast-glob-3.3.2" - sources."fastq-1.15.0" + sources."fastq-1.16.0" sources."fill-range-7.0.1" sources."glob-parent-5.1.2" sources."is-extglob-2.1.1" @@ -60967,8 +62205,8 @@ in sources."muggle-string-0.3.1" sources."path-browserify-1.0.1" sources."picomatch-2.3.1" - sources."prettier-3.1.0" - (sources."prettier-plugin-astro-0.12.2" // { + sources."prettier-3.1.1" + (sources."prettier-plugin-astro-0.12.3" // { dependencies = [ sources."@astrojs/compiler-1.8.2" ]; @@ -60983,15 +62221,15 @@ in sources."suf-log-2.5.3" sources."to-regex-range-5.0.1" sources."typesafe-path-0.2.2" - sources."typescript-5.3.2" - sources."typescript-auto-import-cache-0.3.0" + sources."typescript-5.3.3" + sources."typescript-auto-import-cache-0.3.2" sources."volar-service-css-0.0.16" sources."volar-service-emmet-0.0.16" sources."volar-service-html-0.0.16" sources."volar-service-prettier-0.0.16" sources."volar-service-typescript-0.0.16" sources."volar-service-typescript-twoslash-queries-0.0.16" - sources."vscode-css-languageservice-6.2.10" + sources."vscode-css-languageservice-6.2.11" sources."vscode-html-languageservice-5.1.1" sources."vscode-jsonrpc-8.2.0" sources."vscode-languageserver-9.0.1" @@ -61022,15 +62260,15 @@ in }; dependencies = [ sources."@ampproject/remapping-2.2.1" - sources."@babel/code-frame-7.23.4" - sources."@babel/compat-data-7.23.3" - (sources."@babel/core-7.23.3" // { + sources."@babel/code-frame-7.23.5" + sources."@babel/compat-data-7.23.5" + (sources."@babel/core-7.23.7" // { dependencies = [ sources."semver-6.3.1" ]; }) - sources."@babel/generator-7.23.4" - (sources."@babel/helper-compilation-targets-7.22.15" // { + sources."@babel/generator-7.23.6" + (sources."@babel/helper-compilation-targets-7.23.6" // { dependencies = [ sources."semver-6.3.1" ]; @@ -61044,13 +62282,13 @@ in sources."@babel/helper-split-export-declaration-7.22.6" sources."@babel/helper-string-parser-7.23.4" sources."@babel/helper-validator-identifier-7.22.20" - sources."@babel/helper-validator-option-7.22.15" - sources."@babel/helpers-7.23.4" + sources."@babel/helper-validator-option-7.23.5" + sources."@babel/helpers-7.23.7" sources."@babel/highlight-7.23.4" - sources."@babel/parser-7.23.4" + sources."@babel/parser-7.23.6" sources."@babel/template-7.22.15" - sources."@babel/traverse-7.23.4" - sources."@babel/types-7.23.4" + sources."@babel/traverse-7.23.7" + sources."@babel/types-7.23.6" sources."@jridgewell/gen-mapping-0.3.3" sources."@jridgewell/resolve-uri-3.1.1" sources."@jridgewell/set-array-1.1.2" @@ -61059,8 +62297,8 @@ in sources."ansi-styles-3.2.1" sources."balanced-match-1.0.2" sources."brace-expansion-1.1.11" - sources."browserslist-4.22.1" - sources."caniuse-lite-1.0.30001563" + sources."browserslist-4.22.2" + sources."caniuse-lite-1.0.30001575" sources."chalk-2.4.2" sources."color-convert-1.9.3" sources."color-name-1.1.3" @@ -61068,7 +62306,7 @@ in sources."concat-map-0.0.1" sources."convert-source-map-2.0.0" sources."debug-4.3.4" - sources."electron-to-chromium-1.4.589" + sources."electron-to-chromium-1.4.623" sources."escalade-3.1.1" sources."escape-string-regexp-1.0.5" sources."fs-readdir-recursive-1.1.0" @@ -61086,7 +62324,7 @@ in sources."make-dir-2.1.0" sources."minimatch-3.1.2" sources."ms-2.1.2" - sources."node-releases-2.0.13" + sources."node-releases-2.0.14" sources."once-1.4.0" sources."path-is-absolute-1.0.1" sources."picocolors-1.0.0" @@ -61112,13 +62350,13 @@ in "@commitlint/cli" = nodeEnv.buildNodePackage { name = "_at_commitlint_slash_cli"; packageName = "@commitlint/cli"; - version = "18.4.3"; + version = "18.4.4"; src = fetchurl { - url = "https://registry.npmjs.org/@commitlint/cli/-/cli-18.4.3.tgz"; - sha512 = "zop98yfB3A6NveYAZ3P1Mb6bIXuCeWgnUfVNkH4yhIMQpQfzFwseadazOuSn0OOfTt0lWuFauehpm9GcqM5lww=="; + url = "https://registry.npmjs.org/@commitlint/cli/-/cli-18.4.4.tgz"; + sha512 = "Ro3wIo//fV3XiV1EkdpHog6huaEyNcUAVrSmtgKqYM5g982wOWmP4FXvEDFwRMVgz878CNBvvCc33dMZ5AQJ/g=="; }; dependencies = [ - (sources."@babel/code-frame-7.23.4" // { + (sources."@babel/code-frame-7.23.5" // { dependencies = [ sources."ansi-styles-3.2.1" sources."chalk-2.4.2" @@ -61139,23 +62377,23 @@ in sources."supports-color-5.5.0" ]; }) - sources."@commitlint/config-validator-18.4.3" - sources."@commitlint/ensure-18.4.3" - sources."@commitlint/execute-rule-18.4.3" - sources."@commitlint/format-18.4.3" - sources."@commitlint/is-ignored-18.4.3" - sources."@commitlint/lint-18.4.3" - sources."@commitlint/load-18.4.3" - sources."@commitlint/message-18.4.3" - sources."@commitlint/parse-18.4.3" - sources."@commitlint/read-18.4.3" - sources."@commitlint/resolve-extends-18.4.3" - sources."@commitlint/rules-18.4.3" - sources."@commitlint/to-lines-18.4.3" - sources."@commitlint/top-level-18.4.3" - sources."@commitlint/types-18.4.3" + sources."@commitlint/config-validator-18.4.4" + sources."@commitlint/ensure-18.4.4" + sources."@commitlint/execute-rule-18.4.4" + sources."@commitlint/format-18.4.4" + sources."@commitlint/is-ignored-18.4.4" + sources."@commitlint/lint-18.4.4" + sources."@commitlint/load-18.4.4" + sources."@commitlint/message-18.4.4" + sources."@commitlint/parse-18.4.4" + sources."@commitlint/read-18.4.4" + sources."@commitlint/resolve-extends-18.4.4" + sources."@commitlint/rules-18.4.4" + sources."@commitlint/to-lines-18.4.4" + sources."@commitlint/top-level-18.4.4" + sources."@commitlint/types-18.4.4" sources."@types/minimist-1.2.5" - sources."@types/node-18.18.11" + sources."@types/node-20.10.7" sources."@types/normalize-package-data-2.4.4" sources."JSONStream-1.3.5" sources."ajv-8.12.0" @@ -61192,7 +62430,6 @@ in sources."execa-5.1.1" sources."fast-deep-equal-3.1.3" sources."find-up-5.0.0" - sources."fs-extra-11.1.1" sources."function-bind-1.1.2" sources."get-caller-file-2.0.5" sources."get-stream-6.0.1" @@ -61203,7 +62440,6 @@ in ]; }) sources."global-dirs-0.1.1" - sources."graceful-fs-4.2.11" sources."hard-rejection-2.1.0" sources."has-flag-4.0.0" sources."hasown-2.0.0" @@ -61230,7 +62466,6 @@ in sources."js-yaml-4.1.0" sources."json-parse-even-better-errors-2.3.1" sources."json-schema-traverse-1.0.0" - sources."jsonfile-6.1.0" sources."jsonparse-1.3.1" sources."kind-of-6.0.3" sources."lines-and-columns-1.2.4" @@ -61314,9 +62549,8 @@ in sources."through2-4.0.2" sources."trim-newlines-3.0.1" sources."type-fest-0.18.1" - sources."typescript-5.3.2" + sources."typescript-5.3.3" sources."undici-types-5.26.5" - sources."universalify-2.0.1" sources."uri-js-4.4.1" sources."util-deprecate-1.0.2" sources."validate-npm-package-license-3.0.4" @@ -61345,10 +62579,10 @@ in "@commitlint/config-conventional" = nodeEnv.buildNodePackage { name = "_at_commitlint_slash_config-conventional"; packageName = "@commitlint/config-conventional"; - version = "18.4.3"; + version = "18.4.4"; src = fetchurl { - url = "https://registry.npmjs.org/@commitlint/config-conventional/-/config-conventional-18.4.3.tgz"; - sha512 = "729eRRaNta7JZF07qf6SAGSghoDEp9mH7yHU0m7ff0q89W97wDrWCyZ3yoV3mcQJwbhlmVmZPTkPcm7qiAu8WA=="; + url = "https://registry.npmjs.org/@commitlint/config-conventional/-/config-conventional-18.4.4.tgz"; + sha512 = "Bz3sPQSboBN+Et/KyZrR+OJ3z9PrHDw7Bls0/hv94PmuHBtMq1dCGxS9XzTGzxeMNlytCC4kxF083tbhPljl3Q=="; }; dependencies = [ sources."array-ify-1.0.0" @@ -61370,10 +62604,10 @@ in "@microsoft/rush" = nodeEnv.buildNodePackage { name = "_at_microsoft_slash_rush"; packageName = "@microsoft/rush"; - version = "5.111.0"; + version = "5.112.2"; src = fetchurl { - url = "https://registry.npmjs.org/@microsoft/rush/-/rush-5.111.0.tgz"; - sha512 = "n3VeYpUF33KQY8j1n7PD+SKhmJFiO2ycNiLvV19yDjnc5+MPl5dyveXnJeB0ISDvSN8Aj42RXPraMDnfQK/WJQ=="; + url = "https://registry.npmjs.org/@microsoft/rush/-/rush-5.112.2.tgz"; + sha512 = "5iyG0GWVA2POkoFSGinmTW36XqGZIDDUfLIRH4bMuYVMoYTa2ysfN/b4XBQ2zBqwVOPTmadGnCbU0Jkf3uZbFw=="; }; dependencies = [ (sources."@azure/abort-controller-1.1.0" // { @@ -61391,7 +62625,7 @@ in sources."tslib-2.6.2" ]; }) - (sources."@azure/core-http-2.3.2" // { + (sources."@azure/core-http-3.0.4" // { dependencies = [ sources."@azure/core-tracing-1.0.0-preview.13" sources."form-data-4.0.0" @@ -61408,9 +62642,8 @@ in sources."tslib-2.6.2" ]; }) - (sources."@azure/core-rest-pipeline-1.12.2" // { + (sources."@azure/core-rest-pipeline-1.13.0" // { dependencies = [ - sources."form-data-4.0.0" sources."tslib-2.6.2" ]; }) @@ -61424,7 +62657,7 @@ in sources."tslib-2.6.2" ]; }) - (sources."@azure/identity-2.1.0" // { + (sources."@azure/identity-4.0.0" // { dependencies = [ sources."tslib-2.6.2" ]; @@ -61434,25 +62667,17 @@ in sources."tslib-2.6.2" ]; }) - (sources."@azure/msal-browser-2.38.3" // { - dependencies = [ - sources."@azure/msal-common-13.3.1" - ]; - }) - sources."@azure/msal-common-7.6.0" - (sources."@azure/msal-node-1.18.4" // { - dependencies = [ - sources."@azure/msal-common-13.3.1" - ]; - }) - (sources."@azure/storage-blob-12.11.0" // { + sources."@azure/msal-browser-3.6.0" + sources."@azure/msal-common-14.5.0" + sources."@azure/msal-node-2.6.0" + (sources."@azure/storage-blob-12.17.0" // { dependencies = [ sources."@azure/core-tracing-1.0.0-preview.13" sources."tslib-2.6.2" ]; }) - sources."@babel/code-frame-7.23.4" - sources."@babel/generator-7.23.4" + sources."@babel/code-frame-7.23.5" + sources."@babel/generator-7.23.6" sources."@babel/helper-environment-visitor-7.22.20" sources."@babel/helper-function-name-7.23.0" sources."@babel/helper-hoist-variables-7.22.5" @@ -61460,23 +62685,23 @@ in sources."@babel/helper-string-parser-7.23.4" sources."@babel/helper-validator-identifier-7.22.20" sources."@babel/highlight-7.23.4" - sources."@babel/parser-7.23.4" + sources."@babel/parser-7.23.6" sources."@babel/template-7.22.15" - sources."@babel/traverse-7.23.4" - sources."@babel/types-7.23.4" + sources."@babel/traverse-7.23.7" + sources."@babel/types-7.23.6" sources."@devexpress/error-stack-parser-2.0.6" sources."@jridgewell/gen-mapping-0.3.3" sources."@jridgewell/resolve-uri-3.1.1" sources."@jridgewell/set-array-1.1.2" sources."@jridgewell/sourcemap-codec-1.4.15" sources."@jridgewell/trace-mapping-0.3.20" - sources."@microsoft/rush-lib-5.111.0" + sources."@microsoft/rush-lib-5.112.2" sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" sources."@opentelemetry/api-1.7.0" sources."@pnpm/crypto.base32-hash-2.0.0" - sources."@pnpm/dependency-path-2.1.5" + sources."@pnpm/dependency-path-2.1.7" sources."@pnpm/error-1.4.0" (sources."@pnpm/link-bins-5.3.25" // { dependencies = [ @@ -61500,20 +62725,16 @@ in sources."graceful-fs-4.2.4" ]; }) - sources."@pnpm/types-9.4.0" + sources."@pnpm/types-9.4.2" (sources."@pnpm/write-project-manifest-1.1.7" // { dependencies = [ sources."@pnpm/types-6.4.0" ]; }) - sources."@rushstack/heft-config-file-0.14.2" - (sources."@rushstack/node-core-library-3.61.0" // { - dependencies = [ - sources."import-lazy-4.0.0" - ]; - }) - sources."@rushstack/package-deps-hash-4.1.12" - (sources."@rushstack/package-extractor-0.6.14" // { + sources."@rushstack/heft-config-file-0.14.3" + sources."@rushstack/node-core-library-3.62.0" + sources."@rushstack/package-deps-hash-4.1.14" + (sources."@rushstack/package-extractor-0.6.17" // { dependencies = [ sources."brace-expansion-1.1.11" sources."minimatch-3.0.8" @@ -61524,12 +62745,12 @@ in sources."strip-json-comments-3.1.1" ]; }) - sources."@rushstack/rush-amazon-s3-build-cache-plugin-5.111.0" - sources."@rushstack/rush-azure-storage-build-cache-plugin-5.111.0" - sources."@rushstack/rush-http-build-cache-plugin-5.111.0" - sources."@rushstack/rush-sdk-5.111.0" - sources."@rushstack/stream-collator-4.1.13" - sources."@rushstack/terminal-0.7.12" + sources."@rushstack/rush-amazon-s3-build-cache-plugin-5.112.2" + sources."@rushstack/rush-azure-storage-build-cache-plugin-5.112.2" + sources."@rushstack/rush-http-build-cache-plugin-5.112.2" + sources."@rushstack/rush-sdk-5.112.2" + sources."@rushstack/stream-collator-4.1.15" + sources."@rushstack/terminal-0.7.14" (sources."@rushstack/ts-command-line-4.17.1" // { dependencies = [ sources."argparse-1.0.10" @@ -61542,17 +62763,16 @@ in sources."@types/lodash-4.14.202" sources."@types/minimatch-3.0.5" sources."@types/minimist-1.2.5" - sources."@types/node-20.9.3" + sources."@types/node-20.10.7" sources."@types/node-fetch-2.6.2" sources."@types/normalize-package-data-2.4.4" sources."@types/parse-json-4.0.2" sources."@types/tunnel-0.0.3" - sources."@vue/compiler-core-3.3.8" - sources."@vue/compiler-dom-3.3.8" - sources."@vue/compiler-sfc-3.3.8" - sources."@vue/compiler-ssr-3.3.8" - sources."@vue/reactivity-transform-3.3.8" - sources."@vue/shared-3.3.8" + sources."@vue/compiler-core-3.4.5" + sources."@vue/compiler-dom-3.4.5" + sources."@vue/compiler-sfc-3.4.5" + sources."@vue/compiler-ssr-3.4.5" + sources."@vue/shared-3.4.5" sources."@yarnpkg/lockfile-1.0.2" sources."@zkochan/cmd-shim-5.4.1" sources."agent-base-6.0.2" @@ -61613,7 +62833,7 @@ in sources."ci-info-2.0.0" sources."cli-boxes-2.2.1" sources."cli-cursor-3.1.0" - sources."cli-spinners-2.9.1" + sources."cli-spinners-2.9.2" (sources."cli-table-0.3.11" // { dependencies = [ sources."colors-1.0.3" @@ -61684,6 +62904,7 @@ in ]; }) sources."end-of-stream-1.4.4" + sources."entities-4.5.0" sources."error-ex-1.3.2" sources."escalade-3.1.1" sources."escape-goat-2.1.1" @@ -61696,7 +62917,7 @@ in sources."external-editor-3.1.0" sources."fast-deep-equal-3.1.3" sources."fast-glob-3.3.2" - sources."fastq-1.15.0" + sources."fastq-1.16.0" sources."figures-3.0.0" sources."fill-range-7.0.1" sources."find-up-4.1.0" @@ -61707,11 +62928,7 @@ in }) sources."findup-sync-5.0.0" sources."form-data-3.0.1" - (sources."fs-extra-7.0.1" // { - dependencies = [ - sources."universalify-0.1.2" - ]; - }) + sources."fs-extra-7.0.1" sources."fs-minipass-2.1.0" sources."fs.realpath-1.0.0" sources."function-bind-1.1.2" @@ -61770,7 +62987,7 @@ in sources."resolve-from-4.0.0" ]; }) - sources."import-lazy-2.1.0" + sources."import-lazy-4.0.0" sources."imurmurhash-0.1.4" sources."indent-string-4.0.0" sources."inflight-1.0.6" @@ -61998,7 +63215,7 @@ in ]; }) sources."please-upgrade-node-3.2.0" - sources."postcss-8.4.31" + sources."postcss-8.4.33" (sources."preferred-pm-3.1.2" // { dependencies = [ sources."find-up-5.0.0" @@ -62010,11 +63227,8 @@ in sources."prepend-http-2.0.0" sources."process-0.11.10" sources."process-nextick-args-2.0.1" - sources."psl-1.9.0" sources."pump-3.0.0" - sources."punycode-2.3.1" sources."pupa-2.1.1" - sources."querystringify-2.2.0" sources."queue-microtask-1.2.3" sources."quick-lru-4.0.1" sources."ramda-0.27.2" @@ -62058,7 +63272,6 @@ in sources."require-directory-2.1.1" sources."require-from-string-2.0.2" sources."require-package-name-2.0.1" - sources."requires-port-1.0.0" sources."resolve-1.22.8" (sources."resolve-dir-1.0.1" // { dependencies = [ @@ -62124,7 +63337,6 @@ in sources."to-fast-properties-2.0.0" sources."to-readable-stream-1.0.0" sources."to-regex-range-5.0.1" - sources."tough-cookie-4.1.3" sources."tr46-0.0.3" sources."trim-newlines-3.0.1" sources."true-case-path-2.2.1" @@ -62134,7 +63346,7 @@ in sources."typedarray-to-buffer-3.1.5" sources."undici-types-5.26.5" sources."unique-string-2.0.0" - sources."universalify-0.2.0" + sources."universalify-0.1.2" (sources."update-notifier-5.1.0" // { dependencies = [ sources."ansi-styles-4.3.0" @@ -62142,10 +63354,10 @@ in sources."color-convert-2.0.1" sources."color-name-1.1.4" sources."has-flag-4.0.0" + sources."import-lazy-2.1.0" sources."supports-color-7.2.0" ]; }) - sources."url-parse-1.5.10" sources."url-parse-lax-3.0.0" sources."util-deprecate-1.0.2" sources."uuid-8.3.2" @@ -62197,10 +63409,10 @@ in "@shopify/cli" = nodeEnv.buildNodePackage { name = "_at_shopify_slash_cli"; packageName = "@shopify/cli"; - version = "3.51.0"; + version = "3.53.0"; src = fetchurl { - url = "https://registry.npmjs.org/@shopify/cli/-/cli-3.51.0.tgz"; - sha512 = "0cnXHjltH7ql/UpUBpIgjvxkZ8tzJz4mq7FapuFqGSX7uMkfAJrWWCCmZsFbO3EtojBJ0vV60dIX0wsfrTyDYg=="; + url = "https://registry.npmjs.org/@shopify/cli/-/cli-3.53.0.tgz"; + sha512 = "kWWg7yilH3SOzRdSFlJ7y4uSKqMuFGzM2/mUtF5NP5/WrVZ20EXZNAZmnHU5zW3t3yDJpi5gDn1SUSGAU0rGlg=="; }; dependencies = [ (sources."@alcalzone/ansi-tokenize-0.1.3" // { @@ -62209,11 +63421,11 @@ in sources."is-fullwidth-code-point-4.0.0" ]; }) - sources."@bugsnag/browser-7.21.0" + sources."@bugsnag/browser-7.22.3" sources."@bugsnag/core-7.19.0" sources."@bugsnag/cuid-3.0.2" sources."@bugsnag/js-7.21.0" - sources."@bugsnag/node-7.19.0" + sources."@bugsnag/node-7.22.3" sources."@bugsnag/safe-json-stringify-6.0.0" sources."@cspotcode/source-map-support-0.8.1" sources."@graphql-typed-document-node/core-3.2.0" @@ -62288,7 +63500,7 @@ in ]; }) sources."@pnpm/npm-conf-2.2.2" - (sources."@shopify/cli-kit-3.51.0" // { + (sources."@shopify/cli-kit-3.53.0" // { dependencies = [ sources."ansi-escapes-6.2.0" sources."ansi-regex-6.0.1" @@ -62303,13 +63515,13 @@ in sources."type-fest-3.13.1" ]; }) - sources."@shopify/plugin-did-you-mean-3.51.0" + sources."@shopify/plugin-did-you-mean-3.53.0" sources."@sindresorhus/is-5.6.0" - sources."@swc/core-1.3.99" + sources."@swc/core-1.3.102" sources."@swc/counter-0.1.2" sources."@swc/helpers-0.5.3" sources."@swc/types-0.1.5" - sources."@swc/wasm-1.3.99" + sources."@swc/wasm-1.3.102" sources."@szmarczak/http-timer-5.0.1" sources."@tsconfig/node10-1.0.9" sources."@tsconfig/node12-1.0.11" @@ -62318,15 +63530,15 @@ in sources."@types/archiver-5.3.2" sources."@types/cli-progress-3.11.5" sources."@types/http-cache-semantics-4.0.4" - sources."@types/node-20.9.3" + sources."@types/node-20.10.7" sources."@types/prop-types-15.7.11" - sources."@types/react-18.2.38" + sources."@types/react-18.2.47" sources."@types/readdir-glob-1.1.5" - sources."@types/scheduler-0.16.7" + sources."@types/scheduler-0.16.8" sources."@types/tinycolor2-1.4.6" sources."abort-controller-3.0.0" - sources."acorn-8.11.2" - sources."acorn-walk-8.3.0" + sources."acorn-8.11.3" + sources."acorn-walk-8.3.1" (sources."aggregate-error-3.1.0" // { dependencies = [ sources."clean-stack-2.2.0" @@ -62424,7 +63636,7 @@ in sources."type-fest-1.4.0" ]; }) - sources."csstype-3.1.2" + sources."csstype-3.1.3" sources."data-uri-to-buffer-4.0.1" sources."debounce-fn-5.1.2" sources."debug-4.3.4" @@ -62462,14 +63674,14 @@ in (sources."execa-7.2.0" // { dependencies = [ sources."is-stream-3.0.0" - sources."npm-run-path-5.1.0" + sources."npm-run-path-5.2.0" sources."path-key-4.0.0" ]; }) sources."extract-files-9.0.0" sources."fast-deep-equal-3.1.3" sources."fast-glob-3.3.2" - sources."fastq-1.15.0" + sources."fastq-1.16.0" sources."fetch-blob-3.2.0" (sources."figures-5.0.0" // { dependencies = [ @@ -62646,7 +63858,7 @@ in sources."node-abort-controller-3.1.1" sources."node-domexception-1.0.0" sources."node-fetch-3.3.2" - sources."node-gyp-build-4.7.0" + sources."node-gyp-build-4.8.0" sources."normalize-path-3.0.0" sources."normalize-url-8.0.0" sources."npm-9.9.2" @@ -62796,11 +64008,11 @@ in sources."to-regex-range-5.0.1" sources."tr46-0.0.3" sources."ts-error-1.0.6" - sources."ts-node-10.9.1" + sources."ts-node-10.9.2" sources."tslib-2.6.2" sources."tunnel-agent-0.6.0" sources."type-fest-0.21.3" - sources."typescript-5.3.2" + sources."typescript-5.3.3" sources."undici-types-5.26.5" sources."unique-string-3.0.0" sources."universalify-2.0.1" @@ -62811,16 +64023,16 @@ in sources."util-deprecate-1.0.2" sources."v8-compile-cache-lib-3.0.1" sources."validate-npm-package-name-5.0.0" - sources."web-streams-polyfill-3.2.1" + sources."web-streams-polyfill-3.3.2" sources."webidl-conversions-3.0.1" sources."whatwg-url-5.0.0" - sources."when-exit-2.1.1" + sources."when-exit-2.1.2" sources."which-2.0.2" sources."widest-line-3.1.0" sources."wordwrap-1.0.0" sources."wrap-ansi-7.0.0" sources."wrappy-1.0.2" - sources."ws-8.14.2" + sources."ws-8.16.0" sources."yallist-4.0.0" sources."yarn-1.22.21" sources."yn-3.1.1" @@ -62855,6 +64067,7 @@ in dependencies = [ sources."@alloc/quick-lru-5.2.0" sources."@cspotcode/source-map-support-0.8.1" + sources."@isaacs/cliui-8.0.2" sources."@jridgewell/gen-mapping-0.3.3" sources."@jridgewell/resolve-uri-3.1.1" sources."@jridgewell/set-array-1.1.2" @@ -62863,24 +64076,26 @@ in sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" - sources."@swc/core-1.3.99" + sources."@swc/core-1.3.102" sources."@swc/counter-0.1.2" sources."@swc/helpers-0.5.3" sources."@swc/types-0.1.5" - sources."@swc/wasm-1.3.99" + sources."@swc/wasm-1.3.102" sources."@tsconfig/node10-1.0.9" sources."@tsconfig/node12-1.0.11" sources."@tsconfig/node14-1.0.3" sources."@tsconfig/node16-1.0.4" - sources."@types/node-20.9.3" - sources."acorn-8.11.2" - sources."acorn-walk-8.3.0" + sources."@types/node-20.10.7" + sources."acorn-8.11.3" + sources."acorn-walk-8.3.1" + sources."ansi-regex-5.0.1" + sources."ansi-styles-6.2.1" sources."any-promise-1.3.0" sources."anymatch-3.1.3" sources."arg-5.0.2" sources."balanced-match-1.0.2" sources."binary-extensions-2.2.0" - sources."brace-expansion-1.1.11" + sources."brace-expansion-2.0.1" sources."braces-3.0.2" sources."camelcase-css-2.0.1" (sources."chokidar-3.5.3" // { @@ -62888,53 +64103,60 @@ in sources."glob-parent-5.1.2" ]; }) + sources."color-convert-2.0.1" + sources."color-name-1.1.4" sources."commander-4.1.1" - sources."concat-map-0.0.1" sources."create-require-1.1.1" + sources."cross-spawn-7.0.3" sources."cssesc-3.0.0" sources."didyoumean-1.2.2" sources."diff-4.0.2" sources."dlv-1.1.3" + sources."eastasianwidth-0.2.0" + sources."emoji-regex-9.2.2" (sources."fast-glob-3.3.2" // { dependencies = [ sources."glob-parent-5.1.2" ]; }) - sources."fastq-1.15.0" + sources."fastq-1.16.0" sources."fill-range-7.0.1" - sources."fs.realpath-1.0.0" + sources."foreground-child-3.1.1" sources."fsevents-2.3.3" sources."function-bind-1.1.2" - sources."glob-7.1.6" + sources."glob-10.3.10" sources."glob-parent-6.0.2" sources."hasown-2.0.0" - sources."inflight-1.0.6" - sources."inherits-2.0.4" sources."is-binary-path-2.1.0" sources."is-core-module-2.13.1" sources."is-extglob-2.1.1" + sources."is-fullwidth-code-point-3.0.0" sources."is-glob-4.0.3" sources."is-number-7.0.0" + sources."isexe-2.0.0" + sources."jackspeak-2.3.6" sources."jiti-1.21.0" sources."lilconfig-2.1.0" sources."lines-and-columns-1.2.4" + sources."lru-cache-10.1.0" sources."make-error-1.3.6" sources."merge2-1.4.1" sources."micromatch-4.0.5" - sources."minimatch-3.1.2" + sources."minimatch-9.0.3" + sources."minipass-7.0.4" sources."mz-2.7.0" sources."nanoid-3.3.7" sources."normalize-path-3.0.0" sources."object-assign-4.1.1" sources."object-hash-3.0.0" - sources."once-1.4.0" - sources."path-is-absolute-1.0.1" + sources."path-key-3.1.1" sources."path-parse-1.0.7" + sources."path-scurry-1.10.1" sources."picocolors-1.0.0" sources."picomatch-2.3.1" sources."pify-2.3.0" sources."pirates-4.0.6" - sources."postcss-8.4.31" + sources."postcss-8.4.33" sources."postcss-import-15.1.0" sources."postcss-js-4.0.1" (sources."postcss-load-config-4.0.2" // { @@ -62943,7 +64165,7 @@ in ]; }) sources."postcss-nested-6.0.1" - sources."postcss-selector-parser-6.0.13" + sources."postcss-selector-parser-6.0.15" sources."postcss-value-parser-4.2.0" sources."queue-microtask-1.2.3" sources."read-cache-1.0.0" @@ -62951,25 +64173,50 @@ in sources."resolve-1.22.8" sources."reusify-1.0.4" sources."run-parallel-1.2.0" + sources."shebang-command-2.0.0" + sources."shebang-regex-3.0.0" + sources."signal-exit-4.1.0" sources."source-map-js-1.0.2" - sources."sucrase-3.34.0" + sources."string-width-5.1.2" + (sources."string-width-cjs-4.2.3" // { + dependencies = [ + sources."emoji-regex-8.0.0" + sources."strip-ansi-6.0.1" + ]; + }) + (sources."strip-ansi-7.1.0" // { + dependencies = [ + sources."ansi-regex-6.0.1" + ]; + }) + sources."strip-ansi-cjs-6.0.1" + sources."sucrase-3.35.0" sources."supports-preserve-symlinks-flag-1.0.0" - sources."tailwindcss-3.3.5" + sources."tailwindcss-3.4.1" sources."thenify-3.3.1" sources."thenify-all-1.6.0" sources."to-regex-range-5.0.1" sources."ts-interface-checker-0.1.13" - (sources."ts-node-10.9.1" // { + (sources."ts-node-10.9.2" // { dependencies = [ sources."arg-4.1.3" ]; }) sources."tslib-2.6.2" - sources."typescript-5.3.2" + sources."typescript-5.3.3" sources."undici-types-5.26.5" sources."util-deprecate-1.0.2" sources."v8-compile-cache-lib-3.0.1" - sources."wrappy-1.0.2" + sources."which-2.0.2" + sources."wrap-ansi-8.1.0" + (sources."wrap-ansi-cjs-7.0.0" // { + dependencies = [ + sources."ansi-styles-4.3.0" + sources."emoji-regex-8.0.0" + sources."string-width-4.2.3" + sources."strip-ansi-6.0.1" + ]; + }) sources."yaml-2.3.4" sources."yn-3.1.1" ]; @@ -62994,6 +64241,7 @@ in dependencies = [ sources."@alloc/quick-lru-5.2.0" sources."@cspotcode/source-map-support-0.8.1" + sources."@isaacs/cliui-8.0.2" sources."@jridgewell/gen-mapping-0.3.3" sources."@jridgewell/resolve-uri-3.1.1" sources."@jridgewell/set-array-1.1.2" @@ -63002,24 +64250,26 @@ in sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" - sources."@swc/core-1.3.99" + sources."@swc/core-1.3.102" sources."@swc/counter-0.1.2" sources."@swc/helpers-0.5.3" sources."@swc/types-0.1.5" - sources."@swc/wasm-1.3.99" + sources."@swc/wasm-1.3.102" sources."@tsconfig/node10-1.0.9" sources."@tsconfig/node12-1.0.11" sources."@tsconfig/node14-1.0.3" sources."@tsconfig/node16-1.0.4" - sources."@types/node-20.9.3" - sources."acorn-8.11.2" - sources."acorn-walk-8.3.0" + sources."@types/node-20.10.7" + sources."acorn-8.11.3" + sources."acorn-walk-8.3.1" + sources."ansi-regex-5.0.1" + sources."ansi-styles-6.2.1" sources."any-promise-1.3.0" sources."anymatch-3.1.3" sources."arg-5.0.2" sources."balanced-match-1.0.2" sources."binary-extensions-2.2.0" - sources."brace-expansion-1.1.11" + sources."brace-expansion-2.0.1" sources."braces-3.0.2" sources."camelcase-css-2.0.1" (sources."chokidar-3.5.3" // { @@ -63027,54 +64277,61 @@ in sources."glob-parent-5.1.2" ]; }) + sources."color-convert-2.0.1" + sources."color-name-1.1.4" sources."commander-4.1.1" - sources."concat-map-0.0.1" sources."create-require-1.1.1" + sources."cross-spawn-7.0.3" sources."cssesc-3.0.0" sources."didyoumean-1.2.2" sources."diff-4.0.2" sources."dlv-1.1.3" + sources."eastasianwidth-0.2.0" + sources."emoji-regex-9.2.2" (sources."fast-glob-3.3.2" // { dependencies = [ sources."glob-parent-5.1.2" ]; }) - sources."fastq-1.15.0" + sources."fastq-1.16.0" sources."fill-range-7.0.1" - sources."fs.realpath-1.0.0" + sources."foreground-child-3.1.1" sources."fsevents-2.3.3" sources."function-bind-1.1.2" - sources."glob-7.1.6" + sources."glob-10.3.10" sources."glob-parent-6.0.2" sources."hasown-2.0.0" - sources."inflight-1.0.6" - sources."inherits-2.0.4" sources."is-binary-path-2.1.0" sources."is-core-module-2.13.1" sources."is-extglob-2.1.1" + sources."is-fullwidth-code-point-3.0.0" sources."is-glob-4.0.3" sources."is-number-7.0.0" + sources."isexe-2.0.0" + sources."jackspeak-2.3.6" sources."jiti-1.21.0" sources."lilconfig-2.1.0" sources."lines-and-columns-1.2.4" + sources."lru-cache-10.1.0" sources."make-error-1.3.6" sources."merge2-1.4.1" sources."micromatch-4.0.5" sources."mini-svg-data-uri-1.4.4" - sources."minimatch-3.1.2" + sources."minimatch-9.0.3" + sources."minipass-7.0.4" sources."mz-2.7.0" sources."nanoid-3.3.7" sources."normalize-path-3.0.0" sources."object-assign-4.1.1" sources."object-hash-3.0.0" - sources."once-1.4.0" - sources."path-is-absolute-1.0.1" + sources."path-key-3.1.1" sources."path-parse-1.0.7" + sources."path-scurry-1.10.1" sources."picocolors-1.0.0" sources."picomatch-2.3.1" sources."pify-2.3.0" sources."pirates-4.0.6" - sources."postcss-8.4.31" + sources."postcss-8.4.33" sources."postcss-import-15.1.0" sources."postcss-js-4.0.1" (sources."postcss-load-config-4.0.2" // { @@ -63083,7 +64340,7 @@ in ]; }) sources."postcss-nested-6.0.1" - sources."postcss-selector-parser-6.0.13" + sources."postcss-selector-parser-6.0.15" sources."postcss-value-parser-4.2.0" sources."queue-microtask-1.2.3" sources."read-cache-1.0.0" @@ -63091,25 +64348,50 @@ in sources."resolve-1.22.8" sources."reusify-1.0.4" sources."run-parallel-1.2.0" + sources."shebang-command-2.0.0" + sources."shebang-regex-3.0.0" + sources."signal-exit-4.1.0" sources."source-map-js-1.0.2" - sources."sucrase-3.34.0" + sources."string-width-5.1.2" + (sources."string-width-cjs-4.2.3" // { + dependencies = [ + sources."emoji-regex-8.0.0" + sources."strip-ansi-6.0.1" + ]; + }) + (sources."strip-ansi-7.1.0" // { + dependencies = [ + sources."ansi-regex-6.0.1" + ]; + }) + sources."strip-ansi-cjs-6.0.1" + sources."sucrase-3.35.0" sources."supports-preserve-symlinks-flag-1.0.0" - sources."tailwindcss-3.3.5" + sources."tailwindcss-3.4.1" sources."thenify-3.3.1" sources."thenify-all-1.6.0" sources."to-regex-range-5.0.1" sources."ts-interface-checker-0.1.13" - (sources."ts-node-10.9.1" // { + (sources."ts-node-10.9.2" // { dependencies = [ sources."arg-4.1.3" ]; }) sources."tslib-2.6.2" - sources."typescript-5.3.2" + sources."typescript-5.3.3" sources."undici-types-5.26.5" sources."util-deprecate-1.0.2" sources."v8-compile-cache-lib-3.0.1" - sources."wrappy-1.0.2" + sources."which-2.0.2" + sources."wrap-ansi-8.1.0" + (sources."wrap-ansi-cjs-7.0.0" // { + dependencies = [ + sources."ansi-styles-4.3.0" + sources."emoji-regex-8.0.0" + sources."string-width-4.2.3" + sources."strip-ansi-6.0.1" + ]; + }) sources."yaml-2.3.4" sources."yn-3.1.1" ]; @@ -63123,24 +64405,6 @@ in bypassCache = true; reconstructLock = true; }; - "@tailwindcss/language-server" = nodeEnv.buildNodePackage { - name = "_at_tailwindcss_slash_language-server"; - packageName = "@tailwindcss/language-server"; - version = "0.0.14"; - src = fetchurl { - url = "https://registry.npmjs.org/@tailwindcss/language-server/-/language-server-0.0.14.tgz"; - sha512 = "WLkoJWzcYoysef/yPouukwpIB5pdAeXML0B+O2rCLAM/GmGT2jB3+431y7SLghy1ByscILcQt+iUpvTwNjJjPw=="; - }; - buildInputs = globalBuildInputs; - meta = { - description = "Tailwind CSS Language Server"; - homepage = "https://github.com/tailwindlabs/tailwindcss-intellisense/tree/HEAD/packages/tailwindcss-language-server#readme"; - license = "MIT"; - }; - production = true; - bypassCache = true; - reconstructLock = true; - }; "@tailwindcss/line-clamp" = nodeEnv.buildNodePackage { name = "_at_tailwindcss_slash_line-clamp"; packageName = "@tailwindcss/line-clamp"; @@ -63152,6 +64416,7 @@ in dependencies = [ sources."@alloc/quick-lru-5.2.0" sources."@cspotcode/source-map-support-0.8.1" + sources."@isaacs/cliui-8.0.2" sources."@jridgewell/gen-mapping-0.3.3" sources."@jridgewell/resolve-uri-3.1.1" sources."@jridgewell/set-array-1.1.2" @@ -63160,24 +64425,26 @@ in sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" - sources."@swc/core-1.3.99" + sources."@swc/core-1.3.102" sources."@swc/counter-0.1.2" sources."@swc/helpers-0.5.3" sources."@swc/types-0.1.5" - sources."@swc/wasm-1.3.99" + sources."@swc/wasm-1.3.102" sources."@tsconfig/node10-1.0.9" sources."@tsconfig/node12-1.0.11" sources."@tsconfig/node14-1.0.3" sources."@tsconfig/node16-1.0.4" - sources."@types/node-20.9.3" - sources."acorn-8.11.2" - sources."acorn-walk-8.3.0" + sources."@types/node-20.10.7" + sources."acorn-8.11.3" + sources."acorn-walk-8.3.1" + sources."ansi-regex-5.0.1" + sources."ansi-styles-6.2.1" sources."any-promise-1.3.0" sources."anymatch-3.1.3" sources."arg-5.0.2" sources."balanced-match-1.0.2" sources."binary-extensions-2.2.0" - sources."brace-expansion-1.1.11" + sources."brace-expansion-2.0.1" sources."braces-3.0.2" sources."camelcase-css-2.0.1" (sources."chokidar-3.5.3" // { @@ -63185,53 +64452,60 @@ in sources."glob-parent-5.1.2" ]; }) + sources."color-convert-2.0.1" + sources."color-name-1.1.4" sources."commander-4.1.1" - sources."concat-map-0.0.1" sources."create-require-1.1.1" + sources."cross-spawn-7.0.3" sources."cssesc-3.0.0" sources."didyoumean-1.2.2" sources."diff-4.0.2" sources."dlv-1.1.3" + sources."eastasianwidth-0.2.0" + sources."emoji-regex-9.2.2" (sources."fast-glob-3.3.2" // { dependencies = [ sources."glob-parent-5.1.2" ]; }) - sources."fastq-1.15.0" + sources."fastq-1.16.0" sources."fill-range-7.0.1" - sources."fs.realpath-1.0.0" + sources."foreground-child-3.1.1" sources."fsevents-2.3.3" sources."function-bind-1.1.2" - sources."glob-7.1.6" + sources."glob-10.3.10" sources."glob-parent-6.0.2" sources."hasown-2.0.0" - sources."inflight-1.0.6" - sources."inherits-2.0.4" sources."is-binary-path-2.1.0" sources."is-core-module-2.13.1" sources."is-extglob-2.1.1" + sources."is-fullwidth-code-point-3.0.0" sources."is-glob-4.0.3" sources."is-number-7.0.0" + sources."isexe-2.0.0" + sources."jackspeak-2.3.6" sources."jiti-1.21.0" sources."lilconfig-2.1.0" sources."lines-and-columns-1.2.4" + sources."lru-cache-10.1.0" sources."make-error-1.3.6" sources."merge2-1.4.1" sources."micromatch-4.0.5" - sources."minimatch-3.1.2" + sources."minimatch-9.0.3" + sources."minipass-7.0.4" sources."mz-2.7.0" sources."nanoid-3.3.7" sources."normalize-path-3.0.0" sources."object-assign-4.1.1" sources."object-hash-3.0.0" - sources."once-1.4.0" - sources."path-is-absolute-1.0.1" + sources."path-key-3.1.1" sources."path-parse-1.0.7" + sources."path-scurry-1.10.1" sources."picocolors-1.0.0" sources."picomatch-2.3.1" sources."pify-2.3.0" sources."pirates-4.0.6" - sources."postcss-8.4.31" + sources."postcss-8.4.33" sources."postcss-import-15.1.0" sources."postcss-js-4.0.1" (sources."postcss-load-config-4.0.2" // { @@ -63240,7 +64514,7 @@ in ]; }) sources."postcss-nested-6.0.1" - sources."postcss-selector-parser-6.0.13" + sources."postcss-selector-parser-6.0.15" sources."postcss-value-parser-4.2.0" sources."queue-microtask-1.2.3" sources."read-cache-1.0.0" @@ -63248,25 +64522,50 @@ in sources."resolve-1.22.8" sources."reusify-1.0.4" sources."run-parallel-1.2.0" + sources."shebang-command-2.0.0" + sources."shebang-regex-3.0.0" + sources."signal-exit-4.1.0" sources."source-map-js-1.0.2" - sources."sucrase-3.34.0" + sources."string-width-5.1.2" + (sources."string-width-cjs-4.2.3" // { + dependencies = [ + sources."emoji-regex-8.0.0" + sources."strip-ansi-6.0.1" + ]; + }) + (sources."strip-ansi-7.1.0" // { + dependencies = [ + sources."ansi-regex-6.0.1" + ]; + }) + sources."strip-ansi-cjs-6.0.1" + sources."sucrase-3.35.0" sources."supports-preserve-symlinks-flag-1.0.0" - sources."tailwindcss-3.3.5" + sources."tailwindcss-3.4.1" sources."thenify-3.3.1" sources."thenify-all-1.6.0" sources."to-regex-range-5.0.1" sources."ts-interface-checker-0.1.13" - (sources."ts-node-10.9.1" // { + (sources."ts-node-10.9.2" // { dependencies = [ sources."arg-4.1.3" ]; }) sources."tslib-2.6.2" - sources."typescript-5.3.2" + sources."typescript-5.3.3" sources."undici-types-5.26.5" sources."util-deprecate-1.0.2" sources."v8-compile-cache-lib-3.0.1" - sources."wrappy-1.0.2" + sources."which-2.0.2" + sources."wrap-ansi-8.1.0" + (sources."wrap-ansi-cjs-7.0.0" // { + dependencies = [ + sources."ansi-styles-4.3.0" + sources."emoji-regex-8.0.0" + sources."string-width-4.2.3" + sources."strip-ansi-6.0.1" + ]; + }) sources."yaml-2.3.4" sources."yn-3.1.1" ]; @@ -63291,6 +64590,7 @@ in dependencies = [ sources."@alloc/quick-lru-5.2.0" sources."@cspotcode/source-map-support-0.8.1" + sources."@isaacs/cliui-8.0.2" sources."@jridgewell/gen-mapping-0.3.3" sources."@jridgewell/resolve-uri-3.1.1" sources."@jridgewell/set-array-1.1.2" @@ -63299,24 +64599,26 @@ in sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" - sources."@swc/core-1.3.99" + sources."@swc/core-1.3.102" sources."@swc/counter-0.1.2" sources."@swc/helpers-0.5.3" sources."@swc/types-0.1.5" - sources."@swc/wasm-1.3.99" + sources."@swc/wasm-1.3.102" sources."@tsconfig/node10-1.0.9" sources."@tsconfig/node12-1.0.11" sources."@tsconfig/node14-1.0.3" sources."@tsconfig/node16-1.0.4" - sources."@types/node-20.9.3" - sources."acorn-8.11.2" - sources."acorn-walk-8.3.0" + sources."@types/node-20.10.7" + sources."acorn-8.11.3" + sources."acorn-walk-8.3.1" + sources."ansi-regex-5.0.1" + sources."ansi-styles-6.2.1" sources."any-promise-1.3.0" sources."anymatch-3.1.3" sources."arg-5.0.2" sources."balanced-match-1.0.2" sources."binary-extensions-2.2.0" - sources."brace-expansion-1.1.11" + sources."brace-expansion-2.0.1" sources."braces-3.0.2" sources."camelcase-css-2.0.1" (sources."chokidar-3.5.3" // { @@ -63324,56 +64626,63 @@ in sources."glob-parent-5.1.2" ]; }) + sources."color-convert-2.0.1" + sources."color-name-1.1.4" sources."commander-4.1.1" - sources."concat-map-0.0.1" sources."create-require-1.1.1" + sources."cross-spawn-7.0.3" sources."cssesc-3.0.0" sources."didyoumean-1.2.2" sources."diff-4.0.2" sources."dlv-1.1.3" + sources."eastasianwidth-0.2.0" + sources."emoji-regex-9.2.2" (sources."fast-glob-3.3.2" // { dependencies = [ sources."glob-parent-5.1.2" ]; }) - sources."fastq-1.15.0" + sources."fastq-1.16.0" sources."fill-range-7.0.1" - sources."fs.realpath-1.0.0" + sources."foreground-child-3.1.1" sources."fsevents-2.3.3" sources."function-bind-1.1.2" - sources."glob-7.1.6" + sources."glob-10.3.10" sources."glob-parent-6.0.2" sources."hasown-2.0.0" - sources."inflight-1.0.6" - sources."inherits-2.0.4" sources."is-binary-path-2.1.0" sources."is-core-module-2.13.1" sources."is-extglob-2.1.1" + sources."is-fullwidth-code-point-3.0.0" sources."is-glob-4.0.3" sources."is-number-7.0.0" + sources."isexe-2.0.0" + sources."jackspeak-2.3.6" sources."jiti-1.21.0" sources."lilconfig-2.1.0" sources."lines-and-columns-1.2.4" sources."lodash.castarray-4.4.0" sources."lodash.isplainobject-4.0.6" sources."lodash.merge-4.6.2" + sources."lru-cache-10.1.0" sources."make-error-1.3.6" sources."merge2-1.4.1" sources."micromatch-4.0.5" - sources."minimatch-3.1.2" + sources."minimatch-9.0.3" + sources."minipass-7.0.4" sources."mz-2.7.0" sources."nanoid-3.3.7" sources."normalize-path-3.0.0" sources."object-assign-4.1.1" sources."object-hash-3.0.0" - sources."once-1.4.0" - sources."path-is-absolute-1.0.1" + sources."path-key-3.1.1" sources."path-parse-1.0.7" + sources."path-scurry-1.10.1" sources."picocolors-1.0.0" sources."picomatch-2.3.1" sources."pify-2.3.0" sources."pirates-4.0.6" - sources."postcss-8.4.31" + sources."postcss-8.4.33" sources."postcss-import-15.1.0" sources."postcss-js-4.0.1" (sources."postcss-load-config-4.0.2" // { @@ -63383,7 +64692,7 @@ in }) (sources."postcss-nested-6.0.1" // { dependencies = [ - sources."postcss-selector-parser-6.0.13" + sources."postcss-selector-parser-6.0.15" ]; }) sources."postcss-selector-parser-6.0.10" @@ -63394,29 +64703,54 @@ in sources."resolve-1.22.8" sources."reusify-1.0.4" sources."run-parallel-1.2.0" + sources."shebang-command-2.0.0" + sources."shebang-regex-3.0.0" + sources."signal-exit-4.1.0" sources."source-map-js-1.0.2" - sources."sucrase-3.34.0" + sources."string-width-5.1.2" + (sources."string-width-cjs-4.2.3" // { + dependencies = [ + sources."emoji-regex-8.0.0" + sources."strip-ansi-6.0.1" + ]; + }) + (sources."strip-ansi-7.1.0" // { + dependencies = [ + sources."ansi-regex-6.0.1" + ]; + }) + sources."strip-ansi-cjs-6.0.1" + sources."sucrase-3.35.0" sources."supports-preserve-symlinks-flag-1.0.0" - (sources."tailwindcss-3.3.5" // { + (sources."tailwindcss-3.4.1" // { dependencies = [ - sources."postcss-selector-parser-6.0.13" + sources."postcss-selector-parser-6.0.15" ]; }) sources."thenify-3.3.1" sources."thenify-all-1.6.0" sources."to-regex-range-5.0.1" sources."ts-interface-checker-0.1.13" - (sources."ts-node-10.9.1" // { + (sources."ts-node-10.9.2" // { dependencies = [ sources."arg-4.1.3" ]; }) sources."tslib-2.6.2" - sources."typescript-5.3.2" + sources."typescript-5.3.3" sources."undici-types-5.26.5" sources."util-deprecate-1.0.2" sources."v8-compile-cache-lib-3.0.1" - sources."wrappy-1.0.2" + sources."which-2.0.2" + sources."wrap-ansi-8.1.0" + (sources."wrap-ansi-cjs-7.0.0" // { + dependencies = [ + sources."ansi-styles-4.3.0" + sources."emoji-regex-8.0.0" + sources."string-width-4.2.3" + sources."strip-ansi-6.0.1" + ]; + }) sources."yaml-2.3.4" sources."yn-3.1.1" ]; @@ -63433,10 +64767,10 @@ in "@uppy/companion" = nodeEnv.buildNodePackage { name = "_at_uppy_slash_companion"; packageName = "@uppy/companion"; - version = "4.11.0"; + version = "4.12.0"; src = fetchurl { - url = "https://registry.npmjs.org/@uppy/companion/-/companion-4.11.0.tgz"; - sha512 = "TycDEH1WPvMj5oEz76eq+iioCzamb5ml1KmfR9KLHsoAucTbj6NGiWNjCCKdduxefbeKP0PQtvVZUnjZnIPafg=="; + url = "https://registry.npmjs.org/@uppy/companion/-/companion-4.12.0.tgz"; + sha512 = "Q/1c7HZ/XwMiy0vY978fgFsfOumW8M2AHSIDnAceFKrLkBVQVL+SXj8DnkUTgsxzI/TLShCmuj0kU4oTeC+4rg=="; }; dependencies = [ (sources."@aws-crypto/crc32-3.0.0" // { @@ -63479,47 +64813,46 @@ in sources."tslib-1.14.1" ]; }) - sources."@aws-sdk/client-s3-3.454.0" - sources."@aws-sdk/client-sso-3.451.0" - sources."@aws-sdk/client-sts-3.454.0" - sources."@aws-sdk/core-3.451.0" - sources."@aws-sdk/credential-provider-env-3.451.0" - sources."@aws-sdk/credential-provider-ini-3.451.0" - sources."@aws-sdk/credential-provider-node-3.451.0" - sources."@aws-sdk/credential-provider-process-3.451.0" - sources."@aws-sdk/credential-provider-sso-3.451.0" - sources."@aws-sdk/credential-provider-web-identity-3.451.0" - (sources."@aws-sdk/lib-storage-3.454.0" // { + sources."@aws-sdk/client-s3-3.485.0" + sources."@aws-sdk/client-sso-3.485.0" + sources."@aws-sdk/client-sts-3.485.0" + sources."@aws-sdk/core-3.485.0" + sources."@aws-sdk/credential-provider-env-3.485.0" + sources."@aws-sdk/credential-provider-ini-3.485.0" + sources."@aws-sdk/credential-provider-node-3.485.0" + sources."@aws-sdk/credential-provider-process-3.485.0" + sources."@aws-sdk/credential-provider-sso-3.485.0" + sources."@aws-sdk/credential-provider-web-identity-3.485.0" + (sources."@aws-sdk/lib-storage-3.485.0" // { dependencies = [ sources."buffer-5.6.0" ]; }) - sources."@aws-sdk/middleware-bucket-endpoint-3.451.0" - sources."@aws-sdk/middleware-expect-continue-3.451.0" - sources."@aws-sdk/middleware-flexible-checksums-3.451.0" - sources."@aws-sdk/middleware-host-header-3.451.0" - sources."@aws-sdk/middleware-location-constraint-3.451.0" - sources."@aws-sdk/middleware-logger-3.451.0" - sources."@aws-sdk/middleware-recursion-detection-3.451.0" - sources."@aws-sdk/middleware-sdk-s3-3.451.0" - sources."@aws-sdk/middleware-sdk-sts-3.451.0" - sources."@aws-sdk/middleware-signing-3.451.0" - sources."@aws-sdk/middleware-ssec-3.451.0" - sources."@aws-sdk/middleware-user-agent-3.451.0" - sources."@aws-sdk/region-config-resolver-3.451.0" - sources."@aws-sdk/s3-presigned-post-3.454.0" - sources."@aws-sdk/s3-request-presigner-3.454.0" - sources."@aws-sdk/signature-v4-multi-region-3.451.0" - sources."@aws-sdk/token-providers-3.451.0" - sources."@aws-sdk/types-3.451.0" - sources."@aws-sdk/util-arn-parser-3.310.0" - sources."@aws-sdk/util-endpoints-3.451.0" - sources."@aws-sdk/util-format-url-3.451.0" - sources."@aws-sdk/util-locate-window-3.310.0" - sources."@aws-sdk/util-user-agent-browser-3.451.0" - sources."@aws-sdk/util-user-agent-node-3.451.0" + sources."@aws-sdk/middleware-bucket-endpoint-3.485.0" + sources."@aws-sdk/middleware-expect-continue-3.485.0" + sources."@aws-sdk/middleware-flexible-checksums-3.485.0" + sources."@aws-sdk/middleware-host-header-3.485.0" + sources."@aws-sdk/middleware-location-constraint-3.485.0" + sources."@aws-sdk/middleware-logger-3.485.0" + sources."@aws-sdk/middleware-recursion-detection-3.485.0" + sources."@aws-sdk/middleware-sdk-s3-3.485.0" + sources."@aws-sdk/middleware-signing-3.485.0" + sources."@aws-sdk/middleware-ssec-3.485.0" + sources."@aws-sdk/middleware-user-agent-3.485.0" + sources."@aws-sdk/region-config-resolver-3.485.0" + sources."@aws-sdk/s3-presigned-post-3.485.0" + sources."@aws-sdk/s3-request-presigner-3.485.0" + sources."@aws-sdk/signature-v4-multi-region-3.485.0" + sources."@aws-sdk/token-providers-3.485.0" + sources."@aws-sdk/types-3.485.0" + sources."@aws-sdk/util-arn-parser-3.465.0" + sources."@aws-sdk/util-endpoints-3.485.0" + sources."@aws-sdk/util-format-url-3.485.0" + sources."@aws-sdk/util-locate-window-3.465.0" + sources."@aws-sdk/util-user-agent-browser-3.485.0" + sources."@aws-sdk/util-user-agent-node-3.485.0" sources."@aws-sdk/util-utf8-browser-3.259.0" - sources."@aws-sdk/xml-builder-3.310.0" + sources."@aws-sdk/xml-builder-3.485.0" sources."@httptoolkit/websocket-stream-6.0.1" sources."@redis/bloom-1.0.2" sources."@redis/client-1.2.0" @@ -63528,60 +64861,61 @@ in sources."@redis/search-1.0.6" sources."@redis/time-series-1.0.3" sources."@sindresorhus/is-4.6.0" - sources."@smithy/abort-controller-2.0.13" + sources."@smithy/abort-controller-2.0.16" sources."@smithy/chunked-blob-reader-2.0.0" sources."@smithy/chunked-blob-reader-native-2.0.1" - sources."@smithy/config-resolver-2.0.18" - sources."@smithy/credential-provider-imds-2.1.1" - sources."@smithy/eventstream-codec-2.0.13" - sources."@smithy/eventstream-serde-browser-2.0.13" - sources."@smithy/eventstream-serde-config-resolver-2.0.13" - sources."@smithy/eventstream-serde-node-2.0.13" - sources."@smithy/eventstream-serde-universal-2.0.13" - sources."@smithy/fetch-http-handler-2.2.6" - sources."@smithy/hash-blob-browser-2.0.14" - sources."@smithy/hash-node-2.0.15" - sources."@smithy/hash-stream-node-2.0.15" - sources."@smithy/invalid-dependency-2.0.13" + sources."@smithy/config-resolver-2.0.23" + sources."@smithy/core-1.2.2" + sources."@smithy/credential-provider-imds-2.1.5" + sources."@smithy/eventstream-codec-2.0.16" + sources."@smithy/eventstream-serde-browser-2.0.16" + sources."@smithy/eventstream-serde-config-resolver-2.0.16" + sources."@smithy/eventstream-serde-node-2.0.16" + sources."@smithy/eventstream-serde-universal-2.0.16" + sources."@smithy/fetch-http-handler-2.3.2" + sources."@smithy/hash-blob-browser-2.0.17" + sources."@smithy/hash-node-2.0.18" + sources."@smithy/hash-stream-node-2.0.18" + sources."@smithy/invalid-dependency-2.0.16" sources."@smithy/is-array-buffer-2.0.0" - sources."@smithy/md5-js-2.0.15" - sources."@smithy/middleware-content-length-2.0.15" - sources."@smithy/middleware-endpoint-2.2.0" - sources."@smithy/middleware-retry-2.0.20" - sources."@smithy/middleware-serde-2.0.13" - sources."@smithy/middleware-stack-2.0.7" - sources."@smithy/node-config-provider-2.1.5" - sources."@smithy/node-http-handler-2.1.9" - sources."@smithy/property-provider-2.0.14" - sources."@smithy/protocol-http-3.0.9" - sources."@smithy/querystring-builder-2.0.13" - sources."@smithy/querystring-parser-2.0.13" - sources."@smithy/service-error-classification-2.0.6" - sources."@smithy/shared-ini-file-loader-2.2.4" - sources."@smithy/signature-v4-2.0.15" - sources."@smithy/smithy-client-2.1.15" - sources."@smithy/types-2.5.0" - sources."@smithy/url-parser-2.0.13" + sources."@smithy/md5-js-2.0.18" + sources."@smithy/middleware-content-length-2.0.18" + sources."@smithy/middleware-endpoint-2.3.0" + sources."@smithy/middleware-retry-2.0.26" + sources."@smithy/middleware-serde-2.0.16" + sources."@smithy/middleware-stack-2.0.10" + sources."@smithy/node-config-provider-2.1.9" + sources."@smithy/node-http-handler-2.2.2" + sources."@smithy/property-provider-2.0.17" + sources."@smithy/protocol-http-3.0.12" + sources."@smithy/querystring-builder-2.0.16" + sources."@smithy/querystring-parser-2.0.16" + sources."@smithy/service-error-classification-2.0.9" + sources."@smithy/shared-ini-file-loader-2.2.8" + sources."@smithy/signature-v4-2.0.19" + sources."@smithy/smithy-client-2.2.1" + sources."@smithy/types-2.8.0" + sources."@smithy/url-parser-2.0.16" sources."@smithy/util-base64-2.0.1" - sources."@smithy/util-body-length-browser-2.0.0" + sources."@smithy/util-body-length-browser-2.0.1" sources."@smithy/util-body-length-node-2.1.0" sources."@smithy/util-buffer-from-2.0.0" - sources."@smithy/util-config-provider-2.0.0" - sources."@smithy/util-defaults-mode-browser-2.0.19" - sources."@smithy/util-defaults-mode-node-2.0.25" - sources."@smithy/util-endpoints-1.0.4" + sources."@smithy/util-config-provider-2.1.0" + sources."@smithy/util-defaults-mode-browser-2.0.24" + sources."@smithy/util-defaults-mode-node-2.0.32" + sources."@smithy/util-endpoints-1.0.8" sources."@smithy/util-hex-encoding-2.0.0" - sources."@smithy/util-middleware-2.0.6" - sources."@smithy/util-retry-2.0.6" - sources."@smithy/util-stream-2.0.20" + sources."@smithy/util-middleware-2.0.9" + sources."@smithy/util-retry-2.0.9" + sources."@smithy/util-stream-2.0.24" sources."@smithy/util-uri-escape-2.0.0" sources."@smithy/util-utf8-2.0.2" - sources."@smithy/util-waiter-2.0.13" + sources."@smithy/util-waiter-2.0.16" sources."@szmarczak/http-timer-4.0.6" sources."@types/cacheable-request-6.0.3" sources."@types/http-cache-semantics-4.0.4" sources."@types/keyv-3.1.4" - sources."@types/node-20.9.3" + sources."@types/node-20.10.7" sources."@types/responselike-1.0.3" sources."@types/ws-8.5.10" sources."accepts-1.3.8" @@ -63590,8 +64924,8 @@ in sources."asn1.js-5.4.1" sources."asynckit-0.4.0" sources."atob-2.1.2" - sources."aws-crt-1.19.0" - (sources."axios-1.6.2" // { + sources."aws-crt-1.20.1" + (sources."axios-1.6.5" // { dependencies = [ sources."form-data-4.0.0" ]; @@ -63714,7 +65048,7 @@ in sources."ms-2.0.0" ]; }) - sources."follow-redirects-1.15.3" + sources."follow-redirects-1.15.4" sources."form-data-3.0.1" sources."forwarded-0.2.0" sources."fresh-0.5.2" @@ -63795,8 +65129,8 @@ in sources."minimalistic-crypto-utils-1.0.1" sources."minimatch-3.1.2" sources."minimist-1.2.8" - sources."moment-2.29.4" - sources."moment-timezone-0.5.43" + sources."moment-2.30.1" + sources."moment-timezone-0.5.44" (sources."morgan-1.10.0" // { dependencies = [ sources."debug-2.6.9" @@ -63804,7 +65138,7 @@ in sources."on-finished-2.3.0" ]; }) - (sources."mqtt-4.3.7" // { + (sources."mqtt-4.3.8" // { dependencies = [ sources."duplexify-4.1.2" sources."readable-stream-3.6.2" @@ -63814,7 +65148,7 @@ in sources."mqtt-packet-6.10.0" sources."ms-2.1.3" sources."negotiator-0.6.3" - sources."node-gyp-build-4.7.0" + sources."node-gyp-build-4.8.0" sources."node-schedule-2.1.0" sources."normalize-url-6.1.0" sources."number-allocator-1.0.14" @@ -63863,7 +65197,7 @@ in sources."rfdc-1.3.0" sources."safe-buffer-5.2.1" sources."safer-buffer-2.1.2" - sources."semver-7.5.3" + sources."semver-7.5.4" (sources."send-0.18.0" // { dependencies = [ (sources."debug-2.6.9" // { @@ -63903,7 +65237,7 @@ in sources."tdigest-0.1.2" sources."toidentifier-1.0.1" sources."tslib-2.6.2" - sources."tus-js-client-3.1.1" + sources."tus-js-client-3.1.3" sources."type-is-1.6.18" sources."typedarray-0.0.6" sources."uid-safe-2.1.5" @@ -63941,7 +65275,7 @@ in sha512 = "+/kSxBAkZbeVBePoG2qRSvCkVIslk1dNlU5wQHAcbzOFTi7pEQR6C+kjoj94I+vGXVGMFfDwOYm07sPsd8dM6w=="; }; dependencies = [ - sources."@babel/parser-7.23.4" + sources."@babel/parser-7.23.6" sources."@emmetio/abbreviation-2.3.3" sources."@emmetio/css-abbreviation-2.1.8" sources."@emmetio/scanner-1.0.4" @@ -63968,13 +65302,12 @@ in ]; }) sources."@vscode/l10n-0.0.11" - sources."@vue/compiler-core-3.3.8" - sources."@vue/compiler-dom-3.3.8" - sources."@vue/compiler-sfc-3.3.8" - sources."@vue/compiler-ssr-3.3.8" - sources."@vue/reactivity-3.3.8" - sources."@vue/reactivity-transform-3.3.8" - sources."@vue/shared-3.3.8" + sources."@vue/compiler-core-3.4.5" + sources."@vue/compiler-dom-3.4.5" + sources."@vue/compiler-sfc-3.4.5" + sources."@vue/compiler-ssr-3.4.5" + sources."@vue/reactivity-3.4.5" + sources."@vue/shared-3.4.5" sources."acorn-7.4.1" sources."balanced-match-1.0.2" sources."brace-expansion-2.0.1" @@ -63983,6 +65316,7 @@ in sources."de-indent-1.0.2" sources."define-data-property-1.1.1" sources."emmet-2.4.6" + sources."entities-4.5.0" sources."estree-walker-2.0.2" sources."function-bind-1.1.2" sources."get-intrinsic-1.2.2" @@ -64003,7 +65337,7 @@ in sources."nanoid-3.3.7" sources."object-assign-4.1.1" sources."picocolors-1.0.0" - sources."postcss-8.4.31" + sources."postcss-8.4.33" sources."pug-error-2.0.0" sources."pug-lexer-5.0.1" sources."pug-parser-6.0.0" @@ -64013,9 +65347,9 @@ in sources."source-map-js-1.0.2" sources."token-stream-1.0.0" sources."typesafe-path-0.2.2" - sources."typescript-5.3.2" + sources."typescript-5.3.3" sources."typescript-auto-import-cache-0.2.1" - (sources."vscode-css-languageservice-6.2.10" // { + (sources."vscode-css-languageservice-6.2.11" // { dependencies = [ sources."@vscode/l10n-0.0.16" ]; @@ -64048,7 +65382,7 @@ in sources."vscode-uri-3.0.8" sources."vue-component-meta-1.6.5" sources."vue-component-type-helpers-1.6.5" - sources."vue-template-compiler-2.7.15" + sources."vue-template-compiler-2.7.16" sources."yallist-4.0.0" ]; buildInputs = globalBuildInputs; @@ -64088,7 +65422,7 @@ in sources."@apollo/utils.usagereporting-1.0.1" sources."@apollographql/apollo-tools-0.5.4" sources."@apollographql/graphql-playground-html-1.6.29" - (sources."@babel/code-frame-7.23.4" // { + (sources."@babel/code-frame-7.23.5" // { dependencies = [ sources."ansi-styles-3.2.1" sources."chalk-2.4.2" @@ -64098,23 +65432,23 @@ in sources."supports-color-5.5.0" ]; }) - sources."@babel/compat-data-7.23.3" - (sources."@babel/core-7.23.3" // { + sources."@babel/compat-data-7.23.5" + (sources."@babel/core-7.23.7" // { dependencies = [ sources."semver-6.3.1" ]; }) - sources."@babel/generator-7.23.4" + sources."@babel/generator-7.23.6" sources."@babel/helper-annotate-as-pure-7.22.5" sources."@babel/helper-builder-binary-assignment-operator-visitor-7.22.15" - (sources."@babel/helper-compilation-targets-7.22.15" // { + (sources."@babel/helper-compilation-targets-7.23.6" // { dependencies = [ sources."lru-cache-5.1.1" sources."semver-6.3.1" sources."yallist-3.1.1" ]; }) - (sources."@babel/helper-create-class-features-plugin-7.22.15" // { + (sources."@babel/helper-create-class-features-plugin-7.23.7" // { dependencies = [ sources."semver-6.3.1" ]; @@ -64124,7 +65458,7 @@ in sources."semver-6.3.1" ]; }) - sources."@babel/helper-define-polyfill-provider-0.4.3" + sources."@babel/helper-define-polyfill-provider-0.4.4" sources."@babel/helper-environment-visitor-7.22.20" sources."@babel/helper-function-name-7.23.0" sources."@babel/helper-hoist-variables-7.22.5" @@ -64140,9 +65474,9 @@ in sources."@babel/helper-split-export-declaration-7.22.6" sources."@babel/helper-string-parser-7.23.4" sources."@babel/helper-validator-identifier-7.22.20" - sources."@babel/helper-validator-option-7.22.15" + sources."@babel/helper-validator-option-7.23.5" sources."@babel/helper-wrap-function-7.22.20" - sources."@babel/helpers-7.23.4" + sources."@babel/helpers-7.23.7" (sources."@babel/highlight-7.23.4" // { dependencies = [ sources."ansi-styles-3.2.1" @@ -64153,10 +65487,10 @@ in sources."supports-color-5.5.0" ]; }) - sources."@babel/parser-7.23.4" + sources."@babel/parser-7.23.6" sources."@babel/plugin-bugfix-safari-id-destructuring-collision-in-function-expression-7.23.3" sources."@babel/plugin-bugfix-v8-spread-parameters-in-optional-chaining-7.23.3" - sources."@babel/plugin-bugfix-v8-static-class-fields-redefine-readonly-7.23.3" + sources."@babel/plugin-bugfix-v8-static-class-fields-redefine-readonly-7.23.7" sources."@babel/plugin-proposal-class-properties-7.18.6" sources."@babel/plugin-proposal-nullish-coalescing-operator-7.18.6" sources."@babel/plugin-proposal-optional-chaining-7.21.0" @@ -64183,13 +65517,13 @@ in sources."@babel/plugin-syntax-typescript-7.23.3" sources."@babel/plugin-syntax-unicode-sets-regex-7.18.6" sources."@babel/plugin-transform-arrow-functions-7.23.3" - sources."@babel/plugin-transform-async-generator-functions-7.23.4" + sources."@babel/plugin-transform-async-generator-functions-7.23.7" sources."@babel/plugin-transform-async-to-generator-7.23.3" sources."@babel/plugin-transform-block-scoped-functions-7.23.3" sources."@babel/plugin-transform-block-scoping-7.23.4" sources."@babel/plugin-transform-class-properties-7.23.3" sources."@babel/plugin-transform-class-static-block-7.23.4" - sources."@babel/plugin-transform-classes-7.23.3" + sources."@babel/plugin-transform-classes-7.23.5" sources."@babel/plugin-transform-computed-properties-7.23.3" sources."@babel/plugin-transform-destructuring-7.23.3" sources."@babel/plugin-transform-dotall-regex-7.23.3" @@ -64198,7 +65532,7 @@ in sources."@babel/plugin-transform-exponentiation-operator-7.23.3" sources."@babel/plugin-transform-export-namespace-from-7.23.4" sources."@babel/plugin-transform-flow-strip-types-7.23.3" - sources."@babel/plugin-transform-for-of-7.23.3" + sources."@babel/plugin-transform-for-of-7.23.6" sources."@babel/plugin-transform-function-name-7.23.3" sources."@babel/plugin-transform-json-strings-7.23.4" sources."@babel/plugin-transform-literals-7.23.3" @@ -64227,12 +65561,12 @@ in sources."@babel/plugin-transform-sticky-regex-7.23.3" sources."@babel/plugin-transform-template-literals-7.23.3" sources."@babel/plugin-transform-typeof-symbol-7.23.3" - sources."@babel/plugin-transform-typescript-7.23.4" + sources."@babel/plugin-transform-typescript-7.23.6" sources."@babel/plugin-transform-unicode-escapes-7.23.3" sources."@babel/plugin-transform-unicode-property-regex-7.23.3" sources."@babel/plugin-transform-unicode-regex-7.23.3" sources."@babel/plugin-transform-unicode-sets-regex-7.23.3" - (sources."@babel/preset-env-7.23.3" // { + (sources."@babel/preset-env-7.23.7" // { dependencies = [ sources."semver-6.3.1" ]; @@ -64240,7 +65574,7 @@ in sources."@babel/preset-flow-7.23.3" sources."@babel/preset-modules-0.1.6-no-external-plugins" sources."@babel/preset-typescript-7.23.3" - (sources."@babel/register-7.22.15" // { + (sources."@babel/register-7.23.7" // { dependencies = [ sources."make-dir-2.1.0" sources."pify-4.0.1" @@ -64248,10 +65582,10 @@ in ]; }) sources."@babel/regjsgen-0.8.0" - sources."@babel/runtime-7.23.4" + sources."@babel/runtime-7.23.7" sources."@babel/template-7.22.15" - sources."@babel/traverse-7.23.4" - sources."@babel/types-7.23.4" + sources."@babel/traverse-7.23.7" + sources."@babel/types-7.23.6" sources."@graphql-tools/merge-8.3.1" (sources."@graphql-tools/mock-8.7.20" // { dependencies = [ @@ -64307,9 +65641,9 @@ in }) sources."@types/long-4.0.2" sources."@types/mime-3.0.4" - sources."@types/node-20.9.3" + sources."@types/node-20.10.7" sources."@types/normalize-package-data-2.4.4" - sources."@types/qs-6.9.10" + sources."@types/qs-6.9.11" sources."@types/range-parser-1.2.7" sources."@types/serve-static-1.15.5" sources."@types/through-0.0.33" @@ -64321,10 +65655,14 @@ in }) sources."@vue/cli-ui-addon-webpack-5.0.8" sources."@vue/cli-ui-addon-widgets-5.0.8" - sources."@vue/compiler-core-3.3.8" - sources."@vue/compiler-dom-3.3.8" - sources."@vue/compiler-sfc-2.7.15" - sources."@vue/shared-3.3.8" + (sources."@vue/compiler-core-3.4.5" // { + dependencies = [ + sources."entities-4.5.0" + ]; + }) + sources."@vue/compiler-dom-3.4.5" + sources."@vue/compiler-sfc-2.7.16" + sources."@vue/shared-3.4.5" sources."accepts-1.3.8" sources."aggregate-error-3.1.0" sources."ansi-align-3.0.1" @@ -64368,13 +65706,13 @@ in sources."at-least-node-1.0.0" sources."atob-2.1.2" sources."babel-core-7.0.0-bridge.0" - (sources."babel-plugin-polyfill-corejs2-0.4.6" // { + (sources."babel-plugin-polyfill-corejs2-0.4.7" // { dependencies = [ sources."semver-6.3.1" ]; }) - sources."babel-plugin-polyfill-corejs3-0.8.6" - sources."babel-plugin-polyfill-regenerator-0.5.3" + sources."babel-plugin-polyfill-corejs3-0.8.7" + sources."babel-plugin-polyfill-regenerator-0.5.4" sources."backo2-1.0.2" sources."balanced-match-1.0.2" (sources."base-0.11.2" // { @@ -64397,7 +65735,7 @@ in }) sources."brace-expansion-1.1.11" sources."braces-3.0.2" - sources."browserslist-4.22.1" + sources."browserslist-4.22.2" sources."buffer-5.7.1" sources."buffer-alloc-1.2.0" sources."buffer-alloc-unsafe-1.1.0" @@ -64416,7 +65754,7 @@ in }) sources."call-bind-1.0.5" sources."camelcase-6.3.0" - sources."caniuse-lite-1.0.30001563" + sources."caniuse-lite-1.0.30001575" sources."caw-2.0.1" sources."chalk-4.1.2" sources."chardet-0.7.0" @@ -64429,7 +65767,7 @@ in sources."clean-stack-2.2.0" sources."cli-boxes-2.2.1" sources."cli-cursor-3.1.0" - sources."cli-spinners-2.9.1" + sources."cli-spinners-2.9.2" sources."cli-width-3.0.0" sources."cliui-7.0.4" sources."clone-1.0.4" @@ -64454,7 +65792,7 @@ in sources."cookie-0.5.0" sources."cookie-signature-1.0.6" sources."copy-descriptor-0.1.1" - sources."core-js-compat-3.33.3" + sources."core-js-compat-3.35.0" sources."core-util-is-1.0.3" sources."cors-2.8.5" (sources."cross-spawn-6.0.5" // { @@ -64463,7 +65801,7 @@ in ]; }) sources."cssfilter-0.0.10" - sources."csstype-3.1.2" + sources."csstype-3.1.3" (sources."debug-4.3.4" // { dependencies = [ sources."ms-2.1.2" @@ -64516,7 +65854,7 @@ in sources."easy-stack-1.0.1" sources."ee-first-1.1.1" sources."ejs-3.1.9" - sources."electron-to-chromium-1.4.589" + sources."electron-to-chromium-1.4.623" sources."emoji-regex-8.0.0" sources."encodeurl-1.0.2" sources."encoding-0.1.13" @@ -64571,7 +65909,7 @@ in }) sources."fast-glob-3.3.2" sources."fast-json-stable-stringify-2.1.0" - sources."fastq-1.15.0" + sources."fastq-1.16.0" sources."fd-slicer-1.1.0" sources."figures-3.2.0" sources."file-type-8.1.0" @@ -64616,7 +65954,7 @@ in sources."which-2.0.2" ]; }) - sources."flow-parser-0.222.0" + sources."flow-parser-0.225.1" sources."for-in-1.0.2" sources."forwarded-0.2.0" sources."fragment-cache-0.2.1" @@ -64811,14 +66149,14 @@ in sources."node-abort-controller-3.1.1" sources."node-dir-0.1.17" sources."node-fetch-2.7.0" - sources."node-gyp-build-4.7.0" + sources."node-gyp-build-4.8.0" (sources."node-notifier-10.0.1" // { dependencies = [ sources."uuid-8.3.2" sources."which-2.0.2" ]; }) - sources."node-releases-2.0.13" + sources."node-releases-2.0.14" (sources."normalize-package-data-2.5.0" // { dependencies = [ sources."semver-5.7.2" @@ -64898,12 +66236,13 @@ in ]; }) sources."posix-character-classes-0.1.1" - (sources."postcss-8.4.31" // { + (sources."postcss-8.4.33" // { dependencies = [ sources."nanoid-3.3.7" ]; }) sources."prepend-http-2.0.0" + sources."prettier-2.8.8" sources."prismjs-1.29.0" sources."private-0.1.8" (sources."process-exists-4.1.0" // { @@ -64930,7 +66269,7 @@ in sources."recast-0.20.5" sources."regenerate-1.4.2" sources."regenerate-unicode-properties-10.1.1" - sources."regenerator-runtime-0.14.0" + sources."regenerator-runtime-0.14.1" sources."regenerator-transform-0.15.2" sources."regex-not-1.0.2" sources."regexpu-core-5.3.2" @@ -65124,7 +66463,7 @@ in sources."validate-npm-package-name-3.0.0" sources."value-or-promise-1.0.11" sources."vary-1.1.2" - sources."vue-2.7.15" + sources."vue-2.7.16" (sources."vue-codemod-0.0.5" // { dependencies = [ sources."inquirer-7.3.3" @@ -65298,14 +66637,14 @@ in sha512 = "7SWOLN+1eZ5e9gohQPVdA8XQstGIYei/70T5kmLP6vC41zy8BBYNt35OgLZmbpg3iOQ1vWT17ZMhVikSJySSRg=="; }; dependencies = [ - sources."@babel/code-frame-7.23.4" - sources."@babel/generator-7.23.4" + sources."@babel/code-frame-7.23.5" + sources."@babel/generator-7.23.6" sources."@babel/helper-string-parser-7.23.4" sources."@babel/helper-validator-identifier-7.22.20" sources."@babel/highlight-7.23.4" - sources."@babel/parser-7.23.4" + sources."@babel/parser-7.23.6" sources."@babel/template-7.22.15" - sources."@babel/types-7.23.4" + sources."@babel/types-7.23.6" sources."@jridgewell/gen-mapping-0.3.3" sources."@jridgewell/resolve-uri-3.1.1" sources."@jridgewell/set-array-1.1.2" @@ -65383,7 +66722,7 @@ in sha512 = "rKLBZxD/lvuykdC6XB8ma9YjDl46j9ayHROZUtC1yJ2jlGpoP7RZR1tBBSjtlr260ixIW6iCkqAnHzmti5Q6CQ=="; }; dependencies = [ - sources."@babel/code-frame-7.23.4" + sources."@babel/code-frame-7.23.5" sources."@babel/helper-validator-identifier-7.22.20" sources."@babel/highlight-7.23.4" sources."@isaacs/cliui-8.0.2" @@ -65409,19 +66748,19 @@ in sources."@types/debug-4.1.12" sources."@types/estree-1.0.5" sources."@types/estree-jsx-1.0.3" - sources."@types/hast-2.3.8" + sources."@types/hast-2.3.9" sources."@types/http-cache-semantics-4.0.4" sources."@types/is-empty-1.2.3" sources."@types/mdast-3.0.15" sources."@types/minimist-1.2.5" sources."@types/ms-0.7.34" sources."@types/nlcst-1.0.4" - sources."@types/node-18.18.11" + sources."@types/node-18.19.5" sources."@types/normalize-package-data-2.4.4" sources."@types/supports-color-8.1.3" sources."@types/unist-2.0.10" sources."abbrev-2.0.0" - sources."acorn-8.11.2" + sources."acorn-8.11.3" sources."acorn-jsx-5.3.2" (sources."ansi-align-3.0.1" // { dependencies = [ @@ -65699,7 +67038,7 @@ in sources."path-key-3.1.1" (sources."path-scurry-1.10.1" // { dependencies = [ - sources."lru-cache-10.0.3" + sources."lru-cache-10.1.0" ]; }) sources."pause-stream-0.0.11" @@ -65712,7 +67051,7 @@ in sources."pump-chain-1.0.0" sources."pupa-3.1.0" sources."quick-lru-6.1.2" - sources."quotation-2.0.2" + sources."quotation-2.0.3" (sources."rc-1.2.8" // { dependencies = [ sources."ini-1.3.8" @@ -65720,7 +67059,7 @@ in }) (sources."read-package-json-fast-3.0.2" // { dependencies = [ - sources."json-parse-even-better-errors-3.0.0" + sources."json-parse-even-better-errors-3.0.1" ]; }) (sources."read-pkg-7.1.0" // { @@ -65972,16 +67311,16 @@ in sha512 = "7vd3UC6xKp0HLfua5IjZlcXvGAGy7cBAXTg2lyQ/8WpNhd6SiZ8Be+xm3FyBSYJx5GKcpRCzBh7RH4/0dnY+uQ=="; }; dependencies = [ - sources."browserslist-4.22.1" - sources."caniuse-lite-1.0.30001563" - sources."electron-to-chromium-1.4.589" + sources."browserslist-4.22.2" + sources."caniuse-lite-1.0.30001575" + sources."electron-to-chromium-1.4.623" sources."escalade-3.1.1" sources."fraction.js-4.3.7" sources."nanoid-3.3.7" - sources."node-releases-2.0.13" + sources."node-releases-2.0.14" sources."normalize-range-0.1.2" sources."picocolors-1.0.0" - sources."postcss-8.4.31" + sources."postcss-8.4.33" sources."postcss-value-parser-4.2.0" sources."source-map-js-1.0.2" sources."update-browserslist-db-1.0.13" @@ -66037,10 +67376,10 @@ in aws-cdk = nodeEnv.buildNodePackage { name = "aws-cdk"; packageName = "aws-cdk"; - version = "2.110.0"; + version = "2.118.0"; src = fetchurl { - url = "https://registry.npmjs.org/aws-cdk/-/aws-cdk-2.110.0.tgz"; - sha512 = "ods6/Lh5hWv9qOMmifgg6ur/M6020Yi5mFXUolVSy/0gjzo9wFRcPAxKmQ3++Yz+rf5dadUZmmpc53evvUgR4A=="; + url = "https://registry.npmjs.org/aws-cdk/-/aws-cdk-2.118.0.tgz"; + sha512 = "va4F7fyj+l9oNV39supHeGr+oHBrVds6+3mruLxGmCRnGf3nKfPB8Jy/jd6TnljY8Y6yPZ6bmYFS3CiUZbOATA=="; }; dependencies = [ sources."fsevents-2.3.2" @@ -66058,13 +67397,13 @@ in awesome-lint = nodeEnv.buildNodePackage { name = "awesome-lint"; packageName = "awesome-lint"; - version = "1.0.0"; + version = "1.1.0"; src = fetchurl { - url = "https://registry.npmjs.org/awesome-lint/-/awesome-lint-1.0.0.tgz"; - sha512 = "KNMSnpG0h7zqufvixv+lghJZEY3mvarXAfO9JuLTkziT6mSWj/jOhnq1thQsVn1gIcC9JV+pN+3uCxSELJqwVQ=="; + url = "https://registry.npmjs.org/awesome-lint/-/awesome-lint-1.1.0.tgz"; + sha512 = "ir+DFe1D3P2y18JP7E2xeOoBpO8dtB+NbS+oASU51FbeJs/PhC/XPNxw1spHuu9CJt3YfGJYZUYq+NafInWu+A=="; }; dependencies = [ - (sources."@babel/code-frame-7.23.4" // { + (sources."@babel/code-frame-7.23.5" // { dependencies = [ sources."chalk-2.4.2" ]; @@ -66081,10 +67420,10 @@ in sources."@sindresorhus/is-5.6.0" sources."@szmarczak/http-timer-5.0.1" sources."@types/debug-4.1.12" - sources."@types/eslint-8.44.7" + sources."@types/eslint-8.56.1" sources."@types/estree-1.0.5" sources."@types/estree-jsx-1.0.3" - (sources."@types/hast-2.3.8" // { + (sources."@types/hast-2.3.9" // { dependencies = [ sources."@types/unist-2.0.10" ]; @@ -66123,7 +67462,7 @@ in sources."chalk-5.3.0" sources."character-entities-2.0.2" sources."cli-cursor-4.0.0" - sources."cli-spinners-2.9.1" + sources."cli-spinners-2.9.2" sources."co-3.1.0" sources."color-convert-1.9.3" sources."color-name-1.1.3" @@ -66170,13 +67509,12 @@ in sources."execa-8.0.1" sources."extend-3.0.2" sources."fast-glob-3.3.2" - sources."fastq-1.15.0" + sources."fastq-1.16.0" sources."fill-range-7.0.1" sources."form-data-encoder-2.1.4" sources."fs.realpath-1.0.0" sources."function-bind-1.1.2" sources."get-stream-8.0.1" - sources."git-clone-0.2.0" sources."github-slugger-2.0.0" sources."github-url-to-object-4.0.6" sources."glob-7.2.3" @@ -66219,7 +67557,7 @@ in sources."isexe-2.0.0" sources."js-tokens-4.0.0" sources."json-buffer-3.0.1" - sources."json-parse-even-better-errors-3.0.0" + sources."json-parse-even-better-errors-3.0.1" sources."keyv-4.5.4" sources."kind-of-6.0.3" sources."kleur-4.1.5" @@ -66228,7 +67566,7 @@ in sources."log-symbols-5.1.0" sources."longest-streak-3.1.0" sources."lowercase-keys-3.0.0" - sources."lru-cache-10.0.3" + sources."lru-cache-10.1.0" (sources."mdast-comment-marker-2.1.2" // { dependencies = [ sources."@types/mdast-3.0.15" @@ -66311,7 +67649,7 @@ in sources."ms-2.1.2" sources."normalize-package-data-6.0.0" sources."normalize-url-8.0.0" - (sources."npm-run-path-5.1.0" // { + (sources."npm-run-path-5.2.0" // { dependencies = [ sources."path-key-4.0.0" ]; @@ -66948,7 +68286,7 @@ in sources."to-regex-range-5.0.1" sources."to-vfile-8.0.0" sources."trough-2.1.0" - sources."type-fest-4.8.2" + sources."type-fest-4.9.0" sources."unified-11.0.4" (sources."unified-lint-rule-2.1.2" // { dependencies = [ @@ -67051,10 +68389,10 @@ in bash-language-server = nodeEnv.buildNodePackage { name = "bash-language-server"; packageName = "bash-language-server"; - version = "5.0.0"; + version = "5.1.1"; src = fetchurl { - url = "https://registry.npmjs.org/bash-language-server/-/bash-language-server-5.0.0.tgz"; - sha512 = "1S5PMQO4PwXDIiPHUE6dYd8vZF1NZqb3i4Astd7UXD4lSWnSo71MqSmTpTs/dTYcvo2/9z2IymbNPPyn/VuM2w=="; + url = "https://registry.npmjs.org/bash-language-server/-/bash-language-server-5.1.1.tgz"; + sha512 = "olPB+r2ewiPWeK4ZgcU2Pn9MqjHpSVROaXgFwWiVMEu3UKKhy+Wkltn0ZoIwCKTz6O+qt+lLk/oS3thTP51dZQ=="; }; dependencies = [ sources."@nodelib/fs.scandir-2.1.5" @@ -67063,8 +68401,8 @@ in sources."braces-3.0.2" sources."domino-2.1.6" sources."encoding-0.1.13" - sources."fast-glob-3.3.0" - sources."fastq-1.15.0" + sources."fast-glob-3.3.2" + sources."fastq-1.16.0" sources."fill-range-7.0.1" sources."fuzzy-search-3.2.1" sources."glob-parent-5.1.2" @@ -67074,7 +68412,7 @@ in sources."is-number-7.0.0" sources."merge2-1.4.1" sources."micromatch-4.0.5" - sources."node-fetch-2.6.12" + sources."node-fetch-2.7.0" sources."picomatch-2.3.1" sources."queue-microtask-1.2.3" sources."reusify-1.0.4" @@ -67086,12 +68424,12 @@ in sources."vscode-jsonrpc-8.0.2" sources."vscode-languageserver-8.0.2" sources."vscode-languageserver-protocol-3.17.2" - sources."vscode-languageserver-textdocument-1.0.8" + sources."vscode-languageserver-textdocument-1.0.11" sources."vscode-languageserver-types-3.17.2" sources."web-tree-sitter-0.20.8" sources."webidl-conversions-3.0.1" sources."whatwg-url-5.0.0" - sources."zod-3.21.4" + sources."zod-3.22.4" ]; buildInputs = globalBuildInputs; meta = { @@ -67392,7 +68730,7 @@ in sources."module-deps-6.2.3" sources."object-inspect-1.13.1" sources."object-keys-1.1.1" - sources."object.assign-4.1.4" + sources."object.assign-4.1.5" sources."once-1.4.0" sources."os-browserify-0.3.0" sources."pako-1.0.11" @@ -67477,37 +68815,36 @@ in browser-sync = nodeEnv.buildNodePackage { name = "browser-sync"; packageName = "browser-sync"; - version = "2.29.3"; + version = "3.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/browser-sync/-/browser-sync-2.29.3.tgz"; - sha512 = "NiM38O6XU84+MN+gzspVmXV2fTOoe+jBqIBx3IBdhZrdeURr6ZgznJr/p+hQ+KzkKEiGH/GcC4SQFSL0jV49bg=="; + url = "https://registry.npmjs.org/browser-sync/-/browser-sync-3.0.2.tgz"; + sha512 = "PC9c7aWJFVR4IFySrJxOqLwB9ENn3/TaXCXtAa0SzLwocLN3qMjN+IatbjvtCX92BjNXsY6YWg9Eb7F3Wy255g=="; }; dependencies = [ sources."@socket.io/component-emitter-3.1.0" sources."@types/cookie-0.4.1" sources."@types/cors-2.8.17" - sources."@types/node-20.9.3" + sources."@types/node-20.10.7" sources."accepts-1.3.8" sources."ansi-regex-5.0.1" sources."ansi-styles-4.3.0" sources."anymatch-3.1.3" sources."async-2.6.4" sources."async-each-series-0.1.1" - sources."axios-0.21.4" sources."balanced-match-1.0.2" sources."base64id-2.0.0" sources."batch-0.6.1" sources."binary-extensions-2.2.0" sources."brace-expansion-1.1.11" sources."braces-3.0.2" - sources."browser-sync-client-2.29.3" - sources."browser-sync-ui-2.29.3" + sources."browser-sync-client-3.0.2" + sources."browser-sync-ui-3.0.2" sources."bs-recipes-1.3.4" sources."bufferutil-4.0.8" sources."bytes-3.1.2" sources."chalk-4.1.2" sources."chokidar-3.5.3" - sources."cliui-7.0.4" + sources."cliui-8.0.1" sources."color-convert-2.0.1" sources."color-name-1.1.4" sources."commander-2.20.3" @@ -67544,7 +68881,7 @@ in sources."ms-2.0.0" ]; }) - sources."follow-redirects-1.15.3" + sources."follow-redirects-1.15.4" sources."fresh-0.5.2" sources."fs-extra-3.0.1" sources."fsevents-2.3.3" @@ -67570,12 +68907,6 @@ in sources."is-wsl-1.1.0" sources."jsonfile-3.0.1" sources."limiter-1.1.5" - (sources."localtunnel-2.0.2" // { - dependencies = [ - sources."debug-4.3.2" - sources."yargs-17.1.1" - ]; - }) sources."lodash-4.17.21" sources."lodash.isfinite-3.3.2" sources."micromatch-4.0.5" @@ -67586,11 +68917,10 @@ in sources."mitt-1.2.0" sources."ms-2.1.2" sources."negotiator-0.6.3" - sources."node-gyp-build-4.7.0" + sources."node-gyp-build-4.8.0" sources."normalize-path-3.0.0" sources."object-assign-4.1.1" sources."on-finished-2.3.0" - sources."openurl-1.1.1" sources."opn-5.3.0" sources."parseurl-1.3.3" sources."picomatch-2.3.1" @@ -67633,9 +68963,9 @@ in sources."serve-static-1.13.2" sources."server-destroy-1.0.1" sources."setprototypeof-1.2.0" - sources."socket.io-4.7.2" + sources."socket.io-4.7.3" sources."socket.io-adapter-2.5.2" - sources."socket.io-client-4.7.2" + sources."socket.io-client-4.7.3" sources."socket.io-parser-4.2.4" sources."statuses-1.3.1" sources."stream-throttle-0.1.3" @@ -67655,13 +68985,8 @@ in sources."ws-8.11.0" sources."xmlhttprequest-ssl-2.0.0" sources."y18n-5.0.8" - (sources."yargs-17.7.2" // { - dependencies = [ - sources."cliui-8.0.1" - sources."yargs-parser-21.1.1" - ]; - }) - sources."yargs-parser-20.2.9" + sources."yargs-17.7.2" + sources."yargs-parser-21.1.1" ]; buildInputs = globalBuildInputs; meta = { @@ -67676,16 +69001,16 @@ in cdk8s-cli = nodeEnv.buildNodePackage { name = "cdk8s-cli"; packageName = "cdk8s-cli"; - version = "2.180.0"; + version = "2.198.29"; src = fetchurl { - url = "https://registry.npmjs.org/cdk8s-cli/-/cdk8s-cli-2.180.0.tgz"; - sha512 = "kppg0iGrTMaFkJ9UAmgKMMUzwuHC2PpuvBBjUNn5AqxdQ58l2n9f16W88iJKYbxXXrRJehLW6F9upDJa5FpLyA=="; + url = "https://registry.npmjs.org/cdk8s-cli/-/cdk8s-cli-2.198.29.tgz"; + sha512 = "icTt1LNHgNMXDFsyCC9fn7YF5XiFkoTX3rL+OCVr4zDLlyHA61aHHN7cKC+RgaLDcky2+wu7Ftrq/DLsF5Mjcw=="; }; dependencies = [ sources."@colors/colors-1.6.0" sources."@dabh/diagnostics-2.0.3" - sources."@jsii/check-node-1.92.0" - sources."@jsii/spec-1.92.0" + sources."@jsii/check-node-1.93.0" + sources."@jsii/spec-1.93.0" sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" @@ -67701,7 +69026,7 @@ in sources."@octokit/request-error-2.1.0" sources."@octokit/rest-18.12.0" sources."@octokit/types-6.41.0" - sources."@types/node-16.18.63" + sources."@types/node-16.18.70" sources."@types/triple-beam-1.3.5" sources."@xmldom/xmldom-0.8.10" sources."aggregate-error-3.1.0" @@ -67735,17 +69060,17 @@ in sources."buffer-5.7.1" sources."camelcase-6.3.0" sources."case-1.6.3" - sources."cdk8s-2.68.10" - sources."cdk8s-plus-25-2.22.64" + sources."cdk8s-2.68.23" + sources."cdk8s-plus-25-2.22.68" sources."chalk-4.1.2" sources."chardet-0.7.0" sources."clean-stack-2.2.0" sources."cli-cursor-3.1.0" - sources."cli-spinners-2.9.1" + sources."cli-spinners-2.9.2" sources."cli-width-3.0.0" sources."cliui-7.0.4" sources."clone-2.1.2" - (sources."codemaker-1.92.0" // { + (sources."codemaker-1.93.0" // { dependencies = [ sources."fs-extra-10.1.0" ]; @@ -67784,7 +69109,7 @@ in sources."dotenv-16.3.1" (sources."downlevel-dts-0.11.0" // { dependencies = [ - sources."typescript-5.4.0-dev.20231121" + sources."typescript-5.4.0-dev.20240107" ]; }) sources."emoji-regex-8.0.0" @@ -67800,7 +69125,7 @@ in }) sources."fast-deep-equal-3.1.3" sources."fast-glob-3.3.2" - sources."fastq-1.15.0" + sources."fastq-1.16.0" sources."fecha-4.2.3" (sources."figures-3.2.0" // { dependencies = [ @@ -67811,7 +69136,7 @@ in sources."find-up-4.1.0" sources."flatted-3.2.9" sources."fn.name-1.1.0" - sources."follow-redirects-1.15.3" + sources."follow-redirects-1.15.4" sources."form-data-4.0.0" (sources."fs-extra-8.1.0" // { dependencies = [ @@ -67854,34 +69179,34 @@ in sources."is-plain-object-5.0.0" sources."is-stream-2.0.1" sources."is-unicode-supported-0.1.0" - (sources."jsii-1.92.0" // { + (sources."jsii-1.93.0" // { dependencies = [ sources."fs-extra-10.1.0" sources."yargs-16.2.0" ]; }) - (sources."jsii-pacmak-1.92.0" // { + (sources."jsii-pacmak-1.93.0" // { dependencies = [ sources."fs-extra-10.1.0" sources."yargs-16.2.0" ]; }) - (sources."jsii-reflect-1.92.0" // { + (sources."jsii-reflect-1.93.0" // { dependencies = [ sources."fs-extra-10.1.0" sources."yargs-16.2.0" ]; }) - (sources."jsii-rosetta-1.92.0" // { + (sources."jsii-rosetta-1.93.0" // { dependencies = [ sources."yargs-16.2.0" ]; }) - (sources."jsii-srcmak-0.1.972" // { + (sources."jsii-srcmak-0.1.999" // { dependencies = [ sources."cliui-8.0.1" sources."fs-extra-9.1.0" - (sources."jsii-5.2.32" // { + (sources."jsii-5.2.44" // { dependencies = [ sources."yargs-17.7.2" ]; @@ -67892,7 +69217,7 @@ in }) sources."json-schema-0.4.0" sources."json-schema-traverse-1.0.0" - sources."json2jsii-0.4.0" + sources."json2jsii-0.4.3" sources."jsonfile-6.1.0" sources."kuler-2.0.0" sources."locate-path-5.0.0" @@ -67924,7 +69249,7 @@ in sources."once-1.4.0" sources."one-time-1.0.0" sources."onetime-5.1.2" - sources."oo-ascii-tree-1.92.0" + sources."oo-ascii-tree-1.93.0" sources."ora-5.4.1" sources."os-tmpdir-1.0.2" sources."p-limit-2.3.0" @@ -67956,9 +69281,9 @@ in sources."safe-stable-stringify-2.4.3" sources."safer-buffer-2.1.2" sources."semver-7.5.4" - (sources."semver-intersect-1.4.0" // { + (sources."semver-intersect-1.5.0" // { dependencies = [ - sources."semver-5.7.2" + sources."semver-6.3.1" ]; }) sources."set-blocking-2.0.0" @@ -68038,13 +69363,13 @@ in cdktf-cli = nodeEnv.buildNodePackage { name = "cdktf-cli"; packageName = "cdktf-cli"; - version = "0.19.1"; + version = "0.19.2"; src = fetchurl { - url = "https://registry.npmjs.org/cdktf-cli/-/cdktf-cli-0.19.1.tgz"; - sha512 = "itqPbZKIYpdCCIUGzX/yVSrcD0U16XqpNbnE8hX7E3Kg2Lus5/fjeXX2ijyZw3vp63ScS+5PStEyMNooCh84IA=="; + url = "https://registry.npmjs.org/cdktf-cli/-/cdktf-cli-0.19.2.tgz"; + sha512 = "rwd0yOJmHecOnQsnZxsKFgBO2r1AuPw34IfKSx+FSK6H7aO13Pak+tef6tlhn7f0K79Abk2ZGD3OLs8TeG+78w=="; }; dependencies = [ - (sources."@babel/code-frame-7.23.4" // { + (sources."@babel/code-frame-7.23.5" // { dependencies = [ sources."ansi-styles-3.2.1" sources."chalk-2.4.2" @@ -68055,7 +69380,7 @@ in sources."supports-color-5.5.0" ]; }) - sources."@babel/generator-7.23.4" + sources."@babel/generator-7.23.6" sources."@babel/helper-string-parser-7.23.4" sources."@babel/helper-validator-identifier-7.22.20" (sources."@babel/highlight-7.23.4" // { @@ -68069,17 +69394,17 @@ in sources."supports-color-5.5.0" ]; }) - sources."@babel/parser-7.23.4" + sources."@babel/parser-7.23.6" sources."@babel/template-7.22.15" - sources."@babel/types-7.23.4" - sources."@cdktf/cli-core-0.19.1" - (sources."@cdktf/commons-0.19.1" // { + sources."@babel/types-7.23.6" + sources."@cdktf/cli-core-0.19.2" + (sources."@cdktf/commons-0.19.2" // { dependencies = [ - sources."fs-extra-11.1.1" + sources."fs-extra-11.2.0" sources."uuid-9.0.1" ]; }) - (sources."@cdktf/hcl2cdk-0.19.1" // { + (sources."@cdktf/hcl2cdk-0.19.2" // { dependencies = [ sources."brace-expansion-2.0.1" sources."camelcase-6.3.0" @@ -68087,60 +69412,60 @@ in sources."minimatch-9.0.3" ]; }) - (sources."@cdktf/hcl2json-0.19.1" // { + (sources."@cdktf/hcl2json-0.19.2" // { dependencies = [ - sources."fs-extra-11.1.1" + sources."fs-extra-11.2.0" ]; }) sources."@cdktf/node-pty-prebuilt-multiarch-0.10.1-pre.11" - (sources."@cdktf/provider-generator-0.19.1" // { + (sources."@cdktf/provider-generator-0.19.2" // { dependencies = [ sources."@types/node-18.18.8" ]; }) - (sources."@cdktf/provider-schema-0.19.1" // { + (sources."@cdktf/provider-schema-0.19.2" // { dependencies = [ - sources."fs-extra-11.1.1" + sources."fs-extra-11.2.0" ]; }) (sources."@inquirer/checkbox-1.5.0" // { dependencies = [ sources."@inquirer/core-5.1.1" - sources."cli-spinners-2.9.1" + sources."cli-spinners-2.9.2" sources."signal-exit-4.1.0" ]; }) (sources."@inquirer/confirm-2.0.15" // { dependencies = [ sources."@inquirer/core-5.1.1" - sources."cli-spinners-2.9.1" + sources."cli-spinners-2.9.2" sources."signal-exit-4.1.0" ]; }) (sources."@inquirer/core-2.3.1" // { dependencies = [ sources."@types/mute-stream-0.0.1" - sources."cli-spinners-2.9.1" + sources."cli-spinners-2.9.2" ]; }) (sources."@inquirer/editor-1.2.13" // { dependencies = [ sources."@inquirer/core-5.1.1" - sources."cli-spinners-2.9.1" + sources."cli-spinners-2.9.2" sources."signal-exit-4.1.0" ]; }) (sources."@inquirer/expand-1.1.14" // { dependencies = [ sources."@inquirer/core-5.1.1" - sources."cli-spinners-2.9.1" + sources."cli-spinners-2.9.2" sources."signal-exit-4.1.0" ]; }) (sources."@inquirer/input-1.2.14" // { dependencies = [ sources."@inquirer/core-5.1.1" - sources."cli-spinners-2.9.1" + sources."cli-spinners-2.9.2" sources."signal-exit-4.1.0" ]; }) @@ -68149,14 +69474,14 @@ in (sources."@inquirer/rawlist-1.2.14" // { dependencies = [ sources."@inquirer/core-5.1.1" - sources."cli-spinners-2.9.1" + sources."cli-spinners-2.9.2" sources."signal-exit-4.1.0" ]; }) (sources."@inquirer/select-1.3.1" // { dependencies = [ sources."@inquirer/core-5.1.1" - sources."cli-spinners-2.9.1" + sources."cli-spinners-2.9.2" sources."signal-exit-4.1.0" ]; }) @@ -68176,21 +69501,21 @@ in sources."@jridgewell/set-array-1.1.2" sources."@jridgewell/sourcemap-codec-1.4.15" sources."@jridgewell/trace-mapping-0.3.20" - sources."@jsii/check-node-1.92.0" - sources."@jsii/spec-1.92.0" + sources."@jsii/check-node-1.93.0" + sources."@jsii/spec-1.93.0" sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" - sources."@sentry-internal/tracing-7.81.1" - sources."@sentry/core-7.81.1" - sources."@sentry/node-7.81.1" - sources."@sentry/types-7.81.1" - sources."@sentry/utils-7.81.1" + sources."@sentry-internal/tracing-7.92.0" + sources."@sentry/core-7.92.0" + sources."@sentry/node-7.92.0" + sources."@sentry/types-7.92.0" + sources."@sentry/utils-7.92.0" sources."@types/mute-stream-0.0.4" - sources."@types/node-20.9.3" + sources."@types/node-20.10.7" sources."@types/prop-types-15.7.11" - sources."@types/react-18.2.38" - sources."@types/scheduler-0.16.7" + sources."@types/react-18.2.47" + sources."@types/scheduler-0.16.8" sources."@types/wrap-ansi-3.0.0" sources."@types/yauzl-2.10.3" sources."@types/yoga-layout-1.9.2" @@ -68233,7 +69558,7 @@ in sources."call-bind-1.0.5" sources."camelcase-5.3.1" sources."case-1.6.3" - sources."cdktf-0.19.1" + sources."cdktf-0.19.2" sources."chalk-4.1.2" sources."chardet-0.7.0" sources."chokidar-3.5.3" @@ -68244,10 +69569,14 @@ in sources."cli-spinners-2.7.0" sources."cli-truncate-2.1.0" sources."cli-width-4.1.0" - sources."cliui-6.0.0" + (sources."cliui-8.0.1" // { + dependencies = [ + sources."wrap-ansi-7.0.0" + ]; + }) sources."clone-2.1.2" sources."code-excerpt-3.0.0" - (sources."codemaker-1.92.0" // { + (sources."codemaker-1.93.0" // { dependencies = [ sources."camelcase-6.3.0" sources."decamelize-5.0.1" @@ -68266,7 +69595,7 @@ in sources."crc32-stream-4.0.3" sources."cross-fetch-3.1.8" sources."cross-spawn-7.0.3" - sources."csstype-3.1.2" + sources."csstype-3.1.3" sources."date-format-4.0.14" sources."debug-4.3.4" sources."decamelize-1.2.0" @@ -68286,7 +69615,7 @@ in sources."detect-port-1.5.1" (sources."downlevel-dts-0.11.0" // { dependencies = [ - sources."typescript-5.4.0-dev.20231121" + sources."typescript-5.4.0-dev.20240107" ]; }) sources."eastasianwidth-0.2.0" @@ -68316,7 +69645,7 @@ in }) sources."fast-deep-equal-3.1.3" sources."fast-glob-3.3.2" - sources."fastq-1.15.0" + sources."fastq-1.16.0" sources."fd-slicer-1.1.0" (sources."figures-3.2.0" // { dependencies = [ @@ -68326,7 +69655,7 @@ in sources."fill-range-7.0.1" sources."find-up-4.1.0" sources."flatted-3.2.9" - sources."follow-redirects-1.15.3" + sources."follow-redirects-1.15.4" sources."for-each-0.3.3" (sources."foreground-child-3.1.1" // { dependencies = [ @@ -68380,7 +69709,7 @@ in ]; }) sources."ink-spinner-4.0.3" - sources."ink-table-3.0.0" + sources."ink-table-3.1.0" sources."ink-testing-library-2.1.0" sources."ink-use-stdout-dimensions-1.0.5" sources."internal-slot-1.0.6" @@ -68421,36 +69750,53 @@ in sources."jackspeak-2.3.6" sources."js-tokens-4.0.0" sources."jsesc-2.5.2" - sources."jsii-5.2.32" - (sources."jsii-pacmak-1.92.0" // { + (sources."jsii-5.3.2" // { + dependencies = [ + sources."typescript-5.3.3" + ]; + }) + (sources."jsii-pacmak-1.93.0" // { dependencies = [ sources."cliui-7.0.4" sources."escape-string-regexp-4.0.0" sources."fs-extra-10.1.0" - sources."jsii-1.92.0" - sources."jsii-rosetta-1.92.0" + sources."jsii-1.93.0" + sources."jsii-rosetta-1.93.0" sources."typescript-3.9.10" sources."wrap-ansi-7.0.0" - sources."y18n-5.0.8" sources."yargs-16.2.0" sources."yargs-parser-20.2.9" ]; }) - (sources."jsii-reflect-1.92.0" // { + (sources."jsii-reflect-1.93.0" // { dependencies = [ sources."cliui-7.0.4" sources."fs-extra-10.1.0" sources."wrap-ansi-7.0.0" - sources."y18n-5.0.8" sources."yargs-16.2.0" sources."yargs-parser-20.2.9" ]; }) - sources."jsii-rosetta-5.2.3" - (sources."jsii-srcmak-0.1.972" // { + (sources."jsii-rosetta-5.3.2" // { + dependencies = [ + sources."typescript-5.3.3" + ]; + }) + (sources."jsii-srcmak-0.1.999" // { dependencies = [ sources."fs-extra-9.1.0" - sources."yargs-15.4.1" + (sources."jsii-5.2.44" // { + dependencies = [ + sources."yargs-17.7.2" + ]; + }) + (sources."yargs-15.4.1" // { + dependencies = [ + sources."cliui-6.0.0" + sources."y18n-4.0.3" + sources."yargs-parser-18.1.3" + ]; + }) ]; }) sources."json-schema-traverse-1.0.0" @@ -68492,9 +69838,9 @@ in sources."nan-2.18.0" sources."napi-build-utils-1.0.2" sources."ncp-2.0.0" - sources."node-abi-3.51.0" + sources."node-abi-3.54.0" sources."node-fetch-2.7.0" - sources."node-gyp-build-4.7.0" + sources."node-gyp-build-4.8.0" sources."normalize-path-3.0.0" sources."npm-run-path-4.0.1" sources."object-assign-4.1.1" @@ -68502,11 +69848,11 @@ in sources."object-inspect-1.13.1" sources."object-is-1.1.5" sources."object-keys-1.1.1" - sources."object.assign-4.1.4" + sources."object.assign-4.1.5" sources."obliterator-2.0.4" sources."once-1.4.0" sources."onetime-5.1.2" - sources."oo-ascii-tree-1.92.0" + sources."oo-ascii-tree-1.93.0" sources."open-7.4.2" sources."os-tmpdir-1.0.2" sources."p-limit-2.3.0" @@ -68520,7 +69866,7 @@ in sources."path-parse-1.0.7" (sources."path-scurry-1.10.1" // { dependencies = [ - sources."lru-cache-10.0.3" + sources."lru-cache-10.1.0" ]; }) sources."pend-1.2.0" @@ -68569,9 +69915,9 @@ in sources."sax-1.3.0" sources."scheduler-0.20.2" sources."semver-7.5.4" - (sources."semver-intersect-1.4.0" // { + (sources."semver-intersect-1.5.0" // { dependencies = [ - sources."semver-5.7.2" + sources."semver-6.3.1" ]; }) sources."set-blocking-2.0.0" @@ -68636,17 +69982,10 @@ in sources."xml-js-1.6.11" sources."xmlbuilder-15.1.1" sources."xstate-4.38.3" - sources."y18n-4.0.3" + sources."y18n-5.0.8" sources."yallist-4.0.0" - (sources."yargs-17.7.2" // { - dependencies = [ - sources."cliui-8.0.1" - sources."wrap-ansi-7.0.0" - sources."y18n-5.0.8" - sources."yargs-parser-21.1.1" - ]; - }) - sources."yargs-parser-18.1.3" + sources."yargs-17.7.2" + sources."yargs-parser-21.1.1" sources."yauzl-2.10.0" sources."yoga-layout-prebuilt-1.10.0" (sources."zip-stream-4.1.1" // { @@ -68690,7 +70029,7 @@ in sources."meow-12.1.1" sources."merge-stream-2.0.0" sources."mimic-fn-4.0.0" - (sources."npm-run-path-5.1.0" // { + (sources."npm-run-path-5.2.0" // { dependencies = [ sources."path-key-4.0.0" ]; @@ -68717,10 +70056,10 @@ in coc-clangd = nodeEnv.buildNodePackage { name = "coc-clangd"; packageName = "coc-clangd"; - version = "0.29.3"; + version = "0.30.1"; src = fetchurl { - url = "https://registry.npmjs.org/coc-clangd/-/coc-clangd-0.29.3.tgz"; - sha512 = "saAVd3CJ8W/abJKJDiJ2UnzTii4qIbnUS7Stb+WHmpfSB2h7iGzjMWtgS1t8Gk7sWOBrJPdwOSHLFzVl8rtOEQ=="; + url = "https://registry.npmjs.org/coc-clangd/-/coc-clangd-0.30.1.tgz"; + sha512 = "FcVDRZd0DjxhQjCMecsSO0vTwiTu7n9+klNl6QJp/ehvTAuwDEU/p6bi3OiQ0KOq12btVUP134+aZBEEAdDHmA=="; }; buildInputs = globalBuildInputs; meta = { @@ -68980,10 +70319,10 @@ in coc-go = nodeEnv.buildNodePackage { name = "coc-go"; packageName = "coc-go"; - version = "1.3.29"; + version = "1.3.33"; src = fetchurl { - url = "https://registry.npmjs.org/coc-go/-/coc-go-1.3.29.tgz"; - sha512 = "3+fV9iJ8vQkfwHuQZKvUg4+47XbENWD5xdVX7nFHRXqXHr1OeAai8FVfoOK/pGrKsdr54NsgQNxGEuCO7Rszfg=="; + url = "https://registry.npmjs.org/coc-go/-/coc-go-1.3.33.tgz"; + sha512 = "+sO77p/teqfjWiAwfU9n6PU1XKXDOUOsvD9NKetySOjgew2++/oRvedUXLwOPJYV0DT7aIW5JjcrEIHLTiCeNQ=="; }; dependencies = [ sources."isexe-2.0.0" @@ -69167,10 +70506,10 @@ in coc-markdownlint = nodeEnv.buildNodePackage { name = "coc-markdownlint"; packageName = "coc-markdownlint"; - version = "1.32.0"; + version = "1.32.1"; src = fetchurl { - url = "https://registry.npmjs.org/coc-markdownlint/-/coc-markdownlint-1.32.0.tgz"; - sha512 = "RoHRpSp8OUVIwvp9gRYGiMnDp6CmHNfknO8UM0Z+3R9GXrnNcVFWKCsbUpgUJ3+y5zbTkQdpi8lW2osURpLYHQ=="; + url = "https://registry.npmjs.org/coc-markdownlint/-/coc-markdownlint-1.32.1.tgz"; + sha512 = "SWY6MMnXnoktF8pQtYbL09LGbqiyr2eqaUGbnk9jaMEQV5uYN2LthnEb3M1G5v6PA0xdTNaZyZ2Ixj3xnnHDCQ=="; }; buildInputs = globalBuildInputs; meta = { @@ -69202,7 +70541,7 @@ in sources."available-typed-arrays-1.0.5" sources."await-semaphore-0.1.3" sources."balanced-match-1.0.2" - sources."big-integer-1.6.51" + sources."big-integer-1.6.52" sources."binary-0.3.0" sources."bluebird-3.4.7" sources."brace-expansion-1.1.11" @@ -69240,9 +70579,9 @@ in sources."fast-diff-1.3.0" sources."fb-watchman-2.0.2" sources."flatted-3.2.9" - sources."follow-redirects-1.15.3" + sources."follow-redirects-1.15.4" sources."for-each-0.3.3" - sources."fp-ts-2.16.1" + sources."fp-ts-2.16.2" sources."fs-extra-8.1.0" (sources."fs-minipass-2.1.0" // { dependencies = [ @@ -69336,7 +70675,7 @@ in sources."npm-run-path-2.0.2" sources."object-inspect-1.13.1" sources."object-keys-1.1.1" - sources."object.assign-4.1.4" + sources."object.assign-4.1.5" sources."once-1.4.0" sources."p-finally-1.0.0" sources."path-is-absolute-1.0.1" @@ -69461,13 +70800,13 @@ in coc-pyright = nodeEnv.buildNodePackage { name = "coc-pyright"; packageName = "coc-pyright"; - version = "1.1.336"; + version = "1.1.342"; src = fetchurl { - url = "https://registry.npmjs.org/coc-pyright/-/coc-pyright-1.1.336.tgz"; - sha512 = "libhILl9i1RRuCh0QWyurcOFxx4z9aT2tj1WLigEnbCzeHv2owl746XkQnavH6P66zAEjlDguVoSkWl3Zy3ihQ=="; + url = "https://registry.npmjs.org/coc-pyright/-/coc-pyright-1.1.342.tgz"; + sha512 = "iJUTiN0vyVcPWyAXJhURYfGqnNo8wKiX33xTHQ5NxPHx0ljBvBwwQBXI4Yw6nOxZi+RVtW2U5FEritydW3rUUg=="; }; dependencies = [ - sources."pyright-1.1.336" + sources."pyright-1.1.344" ]; buildInputs = globalBuildInputs; meta = { @@ -69559,21 +70898,21 @@ in coc-sh = nodeEnv.buildNodePackage { name = "coc-sh"; packageName = "coc-sh"; - version = "1.2.0"; + version = "1.2.2"; src = fetchurl { - url = "https://registry.npmjs.org/coc-sh/-/coc-sh-1.2.0.tgz"; - sha512 = "CmCSQ8/L6KEBQ5/QuFk4irlLxhAdKnjpu5gMylHWdZL8QQVKamMadURMj/Pm2jTMtV4YCoWFvVnBCAR26pfROg=="; + url = "https://registry.npmjs.org/coc-sh/-/coc-sh-1.2.2.tgz"; + sha512 = "3aaCl62MAgDWDZ4McFobb4NcvHkg0XPsvDffZ7Ej6C7RUgSwPF9xJTGNjP+2KptIEm9o4H7TbBcxX7944+p2fQ=="; }; dependencies = [ sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" - sources."bash-language-server-5.0.0" + sources."bash-language-server-5.1.1" sources."braces-3.0.2" sources."domino-2.1.6" sources."encoding-0.1.13" - sources."fast-glob-3.3.0" - sources."fastq-1.15.0" + sources."fast-glob-3.3.2" + sources."fastq-1.16.0" sources."fill-range-7.0.1" sources."fuzzy-search-3.2.1" sources."glob-parent-5.1.2" @@ -69583,7 +70922,7 @@ in sources."is-number-7.0.0" sources."merge2-1.4.1" sources."micromatch-4.0.5" - sources."node-fetch-2.6.12" + sources."node-fetch-2.7.0" sources."picomatch-2.3.1" sources."queue-microtask-1.2.3" sources."reusify-1.0.4" @@ -69596,12 +70935,12 @@ in sources."vscode-jsonrpc-8.0.2" sources."vscode-languageserver-8.0.2" sources."vscode-languageserver-protocol-3.17.2" - sources."vscode-languageserver-textdocument-1.0.8" + sources."vscode-languageserver-textdocument-1.0.11" sources."vscode-languageserver-types-3.17.2" sources."web-tree-sitter-0.20.8" sources."webidl-conversions-3.0.1" sources."whatwg-url-5.0.0" - sources."zod-3.21.4" + sources."zod-3.22.4" ]; buildInputs = globalBuildInputs; meta = { @@ -69810,15 +71149,15 @@ in }; dependencies = [ sources."@ampproject/remapping-2.2.1" - (sources."@babel/code-frame-7.23.4" // { + (sources."@babel/code-frame-7.23.5" // { dependencies = [ sources."chalk-2.4.2" ]; }) - sources."@babel/compat-data-7.23.3" - sources."@babel/core-7.23.3" - sources."@babel/generator-7.23.4" - sources."@babel/helper-compilation-targets-7.22.15" + sources."@babel/compat-data-7.23.5" + sources."@babel/core-7.23.7" + sources."@babel/generator-7.23.6" + sources."@babel/helper-compilation-targets-7.23.6" sources."@babel/helper-environment-visitor-7.22.20" sources."@babel/helper-function-name-7.23.0" sources."@babel/helper-hoist-variables-7.22.5" @@ -69828,17 +71167,17 @@ in sources."@babel/helper-split-export-declaration-7.22.6" sources."@babel/helper-string-parser-7.23.4" sources."@babel/helper-validator-identifier-7.22.20" - sources."@babel/helper-validator-option-7.22.15" - sources."@babel/helpers-7.23.4" + sources."@babel/helper-validator-option-7.23.5" + sources."@babel/helpers-7.23.7" (sources."@babel/highlight-7.23.4" // { dependencies = [ sources."chalk-2.4.2" ]; }) - sources."@babel/parser-7.23.4" + sources."@babel/parser-7.23.6" sources."@babel/template-7.22.15" - sources."@babel/traverse-7.23.4" - sources."@babel/types-7.23.4" + sources."@babel/traverse-7.23.7" + sources."@babel/types-7.23.6" sources."@jridgewell/gen-mapping-0.3.3" sources."@jridgewell/resolve-uri-3.1.1" sources."@jridgewell/set-array-1.1.2" @@ -69873,11 +71212,11 @@ in ]; }) sources."braces-3.0.2" - sources."browserslist-4.22.1" + sources."browserslist-4.22.2" sources."callsites-3.1.0" sources."camelcase-5.3.1" sources."camelcase-keys-6.2.2" - sources."caniuse-lite-1.0.30001563" + sources."caniuse-lite-1.0.30001575" (sources."chalk-4.1.2" // { dependencies = [ sources."ansi-styles-4.3.0" @@ -69914,7 +71253,7 @@ in sources."domelementtype-1.3.1" sources."domhandler-2.4.2" sources."domutils-1.7.0" - sources."electron-to-chromium-1.4.589" + sources."electron-to-chromium-1.4.623" sources."emoji-regex-8.0.0" sources."entities-1.1.2" sources."error-ex-1.3.2" @@ -69926,7 +71265,7 @@ in sources."fast-diff-1.3.0" sources."fast-glob-3.3.2" sources."fastest-levenshtein-1.0.16" - sources."fastq-1.15.0" + sources."fastq-1.16.0" sources."file-entry-cache-6.0.1" sources."fill-range-7.0.1" sources."find-up-4.1.0" @@ -70017,7 +71356,7 @@ in ]; }) sources."ms-2.1.2" - sources."node-releases-2.0.13" + sources."node-releases-2.0.14" (sources."normalize-package-data-3.0.3" // { dependencies = [ sources."lru-cache-6.0.0" @@ -70054,7 +71393,7 @@ in sources."postcss-safe-parser-4.0.2" sources."postcss-sass-0.4.4" sources."postcss-scss-2.1.1" - sources."postcss-selector-parser-6.0.13" + sources."postcss-selector-parser-6.0.15" sources."postcss-syntax-0.36.2" sources."postcss-value-parser-4.2.0" sources."punycode-2.3.1" @@ -70269,7 +71608,7 @@ in sha512 = "5Zxv2Adtb6Mlpv2YdKErhf8ntxiBl1UyrbEqo7gR9nFIAfi3o0Ue6TJTpZfOhQViFQxLjJAS65IQVRaNlbhkxw=="; }; dependencies = [ - sources."@babel/code-frame-7.23.4" + sources."@babel/code-frame-7.23.5" sources."@babel/helper-validator-identifier-7.22.20" sources."@babel/highlight-7.23.4" sources."ansi-styles-3.2.1" @@ -70364,7 +71703,7 @@ in sha512 = "PItTyCjeAPF0V7wZO+viGCO2PxrDLujRcb4wN4TKUFLni8fw3p5czviA6JFl5s8WLdkfjH6XkrciTwcVWH2srQ=="; }; dependencies = [ - sources."typescript-5.3.2" + sources."typescript-5.3.3" ]; buildInputs = globalBuildInputs; meta = { @@ -70494,7 +71833,7 @@ in sources."get-intrinsic-1.2.2" sources."glob-7.2.3" sources."glob-parent-5.1.2" - sources."globals-13.23.0" + sources."globals-13.24.0" sources."gopd-1.0.1" sources."has-flag-3.0.0" sources."has-property-descriptors-1.0.1" @@ -70893,7 +72232,7 @@ in sources."colors-1.4.0" sources."commander-2.20.3" sources."escape-string-regexp-1.0.5" - sources."follow-redirects-1.15.3" + sources."follow-redirects-1.15.4" sources."has-flag-3.0.0" sources."is-fullwidth-code-point-2.0.0" sources."log-symbols-2.2.0" @@ -70926,7 +72265,7 @@ in sha512 = "1dP4gpXFhei8IOtlXRE/T/4H88ElHgTiUzh71YUmtjTEHMSRS2Z/fgOxHSxxusGHogsRfxNq1vyAwxSC+EVyDg=="; }; dependencies = [ - sources."@babel/runtime-7.23.4" + sources."@babel/runtime-7.23.7" sources."ansi-regex-5.0.1" sources."ansi-styles-4.3.0" (sources."chalk-4.1.2" // { @@ -70944,7 +72283,7 @@ in sources."has-flag-4.0.0" sources."is-fullwidth-code-point-3.0.0" sources."lodash-4.17.21" - sources."regenerator-runtime-0.14.0" + sources."regenerator-runtime-0.14.1" sources."require-directory-2.1.1" sources."rxjs-7.8.1" sources."shell-quote-1.8.1" @@ -70978,7 +72317,7 @@ in sha512 = "MscvILWZ6nWOoC+p/3Nn3D2cVLkjeQjyZPUr0bQ+vUORE/SPrkClJh8BOoMNpS4yk+zFJ5LlgXACxH6XGQoRXA=="; }; dependencies = [ - sources."@babel/code-frame-7.23.4" + sources."@babel/code-frame-7.23.5" sources."@babel/helper-validator-identifier-7.22.20" sources."@babel/highlight-7.23.4" sources."@hutson/parse-repository-url-5.0.0" @@ -71023,12 +72362,12 @@ in sources."is-obj-2.0.0" sources."is-text-path-2.0.0" sources."js-tokens-4.0.0" - sources."json-parse-even-better-errors-3.0.0" + sources."json-parse-even-better-errors-3.0.1" sources."json-stringify-safe-5.0.1" sources."jsonparse-1.3.1" sources."lines-and-columns-2.0.4" sources."locate-path-7.2.0" - sources."lru-cache-10.0.3" + sources."lru-cache-10.1.0" sources."meow-12.1.1" sources."minimist-1.2.8" sources."neo-async-2.6.2" @@ -71059,7 +72398,7 @@ in sources."tempfile-5.0.0" sources."text-extensions-2.4.0" sources."through-2.3.8" - sources."type-fest-4.8.2" + sources."type-fest-4.9.0" sources."uglify-js-3.17.4" sources."validate-npm-package-license-3.0.4" sources."wordwrap-1.0.0" @@ -71097,7 +72436,7 @@ in sources."dir-glob-3.0.1" sources."escape-string-regexp-5.0.0" sources."fast-glob-3.3.2" - sources."fastq-1.15.0" + sources."fastq-1.16.0" sources."fill-range-7.0.1" sources."glob-parent-5.1.2" sources."globby-13.2.2" @@ -71157,7 +72496,7 @@ in sources."@cycle/run-3.4.0" sources."@cycle/time-0.10.1" sources."@types/cookiejar-2.1.5" - sources."@types/node-20.9.3" + sources."@types/node-20.10.7" sources."@types/superagent-3.8.2" sources."ansi-escapes-3.2.0" sources."ansi-regex-2.1.1" @@ -71332,35 +72671,24 @@ in cspell = nodeEnv.buildNodePackage { name = "cspell"; packageName = "cspell"; - version = "8.0.0"; + version = "8.3.2"; src = fetchurl { - url = "https://registry.npmjs.org/cspell/-/cspell-8.0.0.tgz"; - sha512 = "Nayy25Dh+GAlDFDpVZaQhmidP947rpj1Pn9lmZ3nUFjD9W/yj0h0vrjMLMN4dbonddkmKh4t51C+7NuMP405hg=="; + url = "https://registry.npmjs.org/cspell/-/cspell-8.3.2.tgz"; + sha512 = "V8Ub3RO/a5lwSsltW/ib3Z3G/sczKtSpBBN1JChzbSCfEgaY2mJY8JW0BpkSV+Ug6uJitpXNOOaxa3Xr489i7g=="; }; dependencies = [ - (sources."@babel/code-frame-7.23.4" // { - dependencies = [ - sources."chalk-2.4.2" - ]; - }) - sources."@babel/helper-validator-identifier-7.22.20" - (sources."@babel/highlight-7.23.4" // { - dependencies = [ - sources."chalk-2.4.2" - ]; - }) - sources."@cspell/cspell-bundled-dicts-8.0.0" - sources."@cspell/cspell-json-reporter-8.0.0" - sources."@cspell/cspell-pipe-8.0.0" - sources."@cspell/cspell-resolver-8.0.0" - sources."@cspell/cspell-service-bus-8.0.0" - sources."@cspell/cspell-types-8.0.0" + sources."@cspell/cspell-bundled-dicts-8.3.2" + sources."@cspell/cspell-json-reporter-8.3.2" + sources."@cspell/cspell-pipe-8.3.2" + sources."@cspell/cspell-resolver-8.3.2" + sources."@cspell/cspell-service-bus-8.3.2" + sources."@cspell/cspell-types-8.3.2" sources."@cspell/dict-ada-4.0.2" - sources."@cspell/dict-aws-4.0.0" - sources."@cspell/dict-bash-4.1.2" - sources."@cspell/dict-companies-3.0.28" - sources."@cspell/dict-cpp-5.0.9" - sources."@cspell/dict-cryptocurrencies-4.0.0" + sources."@cspell/dict-aws-4.0.1" + sources."@cspell/dict-bash-4.1.3" + sources."@cspell/dict-companies-3.0.29" + sources."@cspell/dict-cpp-5.1.1" + sources."@cspell/dict-cryptocurrencies-5.0.0" sources."@cspell/dict-csharp-4.0.2" sources."@cspell/dict-css-4.0.12" sources."@cspell/dict-dart-2.0.3" @@ -71369,16 +72697,16 @@ in sources."@cspell/dict-docker-1.1.7" sources."@cspell/dict-dotnet-5.0.0" sources."@cspell/dict-elixir-4.0.3" - sources."@cspell/dict-en-common-misspellings-1.0.2" + sources."@cspell/dict-en-common-misspellings-2.0.0" sources."@cspell/dict-en-gb-1.1.33" - sources."@cspell/dict-en_us-4.3.11" + sources."@cspell/dict-en_us-4.3.13" sources."@cspell/dict-filetypes-3.0.3" sources."@cspell/dict-fonts-4.0.0" sources."@cspell/dict-fsharp-1.0.1" sources."@cspell/dict-fullstack-3.1.5" sources."@cspell/dict-gaming-terms-1.0.4" - sources."@cspell/dict-git-2.0.0" - sources."@cspell/dict-golang-6.0.4" + sources."@cspell/dict-git-3.0.0" + sources."@cspell/dict-golang-6.0.5" sources."@cspell/dict-haskell-4.0.1" sources."@cspell/dict-html-4.0.5" sources."@cspell/dict-html-symbol-entities-4.0.0" @@ -71386,90 +72714,80 @@ in sources."@cspell/dict-k8s-1.0.2" sources."@cspell/dict-latex-4.0.0" sources."@cspell/dict-lorem-ipsum-4.0.0" - sources."@cspell/dict-lua-4.0.2" + sources."@cspell/dict-lua-4.0.3" sources."@cspell/dict-makefile-1.0.0" sources."@cspell/dict-node-4.0.3" - sources."@cspell/dict-npm-5.0.13" - sources."@cspell/dict-php-4.0.4" - sources."@cspell/dict-powershell-5.0.2" + sources."@cspell/dict-npm-5.0.14" + sources."@cspell/dict-php-4.0.5" + sources."@cspell/dict-powershell-5.0.3" sources."@cspell/dict-public-licenses-2.0.5" - sources."@cspell/dict-python-4.1.10" + sources."@cspell/dict-python-4.1.11" sources."@cspell/dict-r-2.0.1" - sources."@cspell/dict-ruby-5.0.1" + sources."@cspell/dict-ruby-5.0.2" sources."@cspell/dict-rust-4.0.1" sources."@cspell/dict-scala-5.0.0" - sources."@cspell/dict-software-terms-3.3.10" - sources."@cspell/dict-sql-2.1.2" + sources."@cspell/dict-software-terms-3.3.16" + sources."@cspell/dict-sql-2.1.3" sources."@cspell/dict-svelte-1.0.2" sources."@cspell/dict-swift-2.0.1" sources."@cspell/dict-typescript-3.1.2" sources."@cspell/dict-vue-3.0.0" - sources."@cspell/dynamic-import-8.0.0" - sources."@cspell/strong-weak-map-8.0.0" + sources."@cspell/dynamic-import-8.3.2" + sources."@cspell/strong-weak-map-8.3.2" + sources."@isaacs/cliui-8.0.2" sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" - sources."ansi-regex-6.0.1" - sources."ansi-styles-3.2.1" - sources."argparse-2.0.1" + sources."ansi-regex-5.0.1" + sources."ansi-styles-6.2.1" sources."array-timsort-1.0.3" sources."balanced-match-1.0.2" - sources."brace-expansion-1.1.11" + sources."brace-expansion-2.0.1" sources."braces-3.0.2" sources."callsites-3.1.0" sources."chalk-5.3.0" sources."chalk-template-1.1.0" sources."clear-module-4.1.2" - sources."color-convert-1.9.3" - sources."color-name-1.1.3" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" sources."commander-11.1.0" sources."comment-json-4.2.3" - sources."concat-map-0.0.1" sources."configstore-6.0.0" sources."core-util-is-1.0.3" - sources."cosmiconfig-8.0.0" + sources."cross-spawn-7.0.3" sources."crypto-random-string-4.0.0" - (sources."cspell-dictionary-8.0.0" // { - dependencies = [ - sources."fast-equals-4.0.3" - ]; - }) - sources."cspell-gitignore-8.0.0" - sources."cspell-glob-8.0.0" - sources."cspell-grammar-8.0.0" - sources."cspell-io-8.0.0" - (sources."cspell-lib-8.0.0" // { - dependencies = [ - sources."find-up-6.3.0" - sources."locate-path-7.2.0" - sources."p-limit-4.0.0" - sources."p-locate-6.0.0" - sources."path-exists-5.0.0" - sources."yocto-queue-1.0.0" - ]; - }) - sources."cspell-trie-lib-8.0.0" + sources."cspell-config-lib-8.3.2" + sources."cspell-dictionary-8.3.2" + sources."cspell-gitignore-8.3.2" + sources."cspell-glob-8.3.2" + sources."cspell-grammar-8.3.2" + sources."cspell-io-8.3.2" + sources."cspell-lib-8.3.2" + sources."cspell-trie-lib-8.3.2" sources."dot-prop-6.0.1" - sources."error-ex-1.3.2" - sources."escape-string-regexp-1.0.5" + sources."eastasianwidth-0.2.0" + sources."emoji-regex-9.2.2" sources."esprima-4.0.1" sources."fast-equals-5.0.1" sources."fast-glob-3.3.2" sources."fast-json-stable-stringify-2.1.0" - sources."fastq-1.15.0" - sources."file-entry-cache-7.0.2" + sources."fastq-1.16.0" + sources."file-entry-cache-8.0.0" sources."fill-range-7.0.1" - sources."find-up-5.0.0" - sources."flat-cache-3.2.0" + sources."find-up-simple-1.0.0" + sources."flat-cache-4.0.0" sources."flatted-3.2.9" - sources."fs.realpath-1.0.0" + (sources."foreground-child-3.1.1" // { + dependencies = [ + sources."signal-exit-4.1.0" + ]; + }) sources."gensequence-6.0.0" sources."get-stdin-9.0.0" - sources."glob-7.2.3" + sources."glob-10.3.10" sources."glob-parent-5.1.2" - sources."global-dirs-3.0.1" + sources."global-directory-4.0.1" sources."graceful-fs-4.2.11" - sources."has-flag-3.0.0" sources."has-own-prop-2.0.0" (sources."import-fresh-3.3.0" // { dependencies = [ @@ -71477,58 +72795,75 @@ in sources."resolve-from-4.0.0" ]; }) - sources."import-meta-resolve-3.1.1" + sources."import-meta-resolve-4.0.0" sources."imurmurhash-0.1.4" - sources."inflight-1.0.6" - sources."inherits-2.0.4" - sources."ini-2.0.0" - sources."is-arrayish-0.2.1" + sources."ini-4.1.1" sources."is-extglob-2.1.1" + sources."is-fullwidth-code-point-3.0.0" sources."is-glob-4.0.3" sources."is-number-7.0.0" sources."is-obj-2.0.0" sources."is-typedarray-1.0.0" - sources."js-tokens-4.0.0" - sources."js-yaml-4.1.0" + sources."isexe-2.0.0" + sources."jackspeak-2.3.6" sources."json-buffer-3.0.1" - sources."json-parse-even-better-errors-2.3.1" sources."keyv-4.5.4" - sources."lines-and-columns-1.2.4" - sources."locate-path-6.0.0" - sources."lru-cache-6.0.0" + sources."lru-cache-10.1.0" sources."merge2-1.4.1" sources."micromatch-4.0.5" - sources."minimatch-3.1.2" - sources."once-1.4.0" - sources."p-limit-3.1.0" - sources."p-locate-5.0.0" + sources."minimatch-9.0.3" + sources."minipass-7.0.4" sources."parent-module-2.0.0" - sources."parse-json-5.2.0" - sources."path-exists-4.0.0" - sources."path-is-absolute-1.0.1" - sources."path-type-4.0.0" + sources."path-key-3.1.1" + sources."path-scurry-1.10.1" sources."picomatch-2.3.1" sources."queue-microtask-1.2.3" sources."repeat-string-1.6.1" sources."resolve-from-5.0.0" sources."reusify-1.0.4" - sources."rimraf-3.0.2" + sources."rimraf-5.0.5" sources."run-parallel-1.2.0" - sources."semver-7.5.4" + (sources."semver-7.5.4" // { + dependencies = [ + sources."lru-cache-6.0.0" + ]; + }) + sources."shebang-command-2.0.0" + sources."shebang-regex-3.0.0" sources."signal-exit-3.0.7" - sources."strip-ansi-7.1.0" - sources."supports-color-5.5.0" + sources."string-width-5.1.2" + (sources."string-width-cjs-4.2.3" // { + dependencies = [ + sources."emoji-regex-8.0.0" + sources."strip-ansi-6.0.1" + ]; + }) + (sources."strip-ansi-7.1.0" // { + dependencies = [ + sources."ansi-regex-6.0.1" + ]; + }) + sources."strip-ansi-cjs-6.0.1" sources."to-regex-range-5.0.1" sources."type-fest-1.4.0" sources."typedarray-to-buffer-3.1.5" sources."unique-string-3.0.0" sources."vscode-languageserver-textdocument-1.0.11" sources."vscode-uri-3.0.8" - sources."wrappy-1.0.2" + sources."which-2.0.2" + sources."wrap-ansi-8.1.0" + (sources."wrap-ansi-cjs-7.0.0" // { + dependencies = [ + sources."ansi-styles-4.3.0" + sources."emoji-regex-8.0.0" + sources."string-width-4.2.3" + sources."strip-ansi-6.0.1" + ]; + }) sources."write-file-atomic-3.0.3" sources."xdg-basedir-5.1.0" sources."yallist-4.0.0" - sources."yocto-queue-0.1.0" + sources."yaml-2.3.4" ]; buildInputs = globalBuildInputs; meta = { @@ -71607,7 +72942,7 @@ in sources."del-6.1.1" sources."dir-glob-3.0.1" sources."fast-glob-3.3.2" - sources."fastq-1.15.0" + sources."fastq-1.16.0" sources."fill-range-7.0.1" sources."find-up-4.1.0" sources."fs.realpath-1.0.0" @@ -71682,7 +73017,7 @@ in sources."ansi-regex-5.0.1" sources."ansi-styles-4.3.0" sources."arch-2.2.0" - sources."big-integer-1.6.51" + sources."big-integer-1.6.52" sources."bplist-parser-0.2.0" sources."bundle-name-3.0.0" sources."clipboardy-3.0.0" @@ -71697,7 +73032,7 @@ in sources."human-signals-4.3.1" sources."is-stream-3.0.0" sources."mimic-fn-4.0.0" - sources."npm-run-path-5.1.0" + sources."npm-run-path-5.2.0" sources."onetime-6.0.0" sources."path-key-4.0.0" sources."strip-final-newline-3.0.0" @@ -71706,7 +73041,7 @@ in sources."default-browser-id-3.0.0" sources."define-lazy-prop-3.0.0" sources."diff-5.1.0" - sources."diff2html-3.4.45" + sources."diff2html-3.4.46" sources."emoji-regex-8.0.0" sources."escalade-3.1.1" sources."execa-5.1.1" @@ -71746,7 +73081,7 @@ in sources."strip-final-newline-2.0.0" sources."titleize-3.0.0" sources."untildify-4.0.0" - sources."web-streams-polyfill-3.2.1" + sources."web-streams-polyfill-3.3.2" sources."which-2.0.2" sources."wrap-ansi-7.0.0" sources."y18n-5.0.8" @@ -71830,19 +73165,19 @@ in ]; }) sources."@oclif/screen-3.0.8" - sources."@swc/core-1.3.99" + sources."@swc/core-1.3.102" sources."@swc/counter-0.1.2" sources."@swc/helpers-0.5.3" sources."@swc/types-0.1.5" - sources."@swc/wasm-1.3.99" + sources."@swc/wasm-1.3.102" sources."@tsconfig/node10-1.0.9" sources."@tsconfig/node12-1.0.11" sources."@tsconfig/node14-1.0.3" sources."@tsconfig/node16-1.0.4" sources."@types/cli-progress-3.11.5" - sources."@types/node-20.9.3" - sources."acorn-8.11.2" - sources."acorn-walk-8.3.0" + sources."@types/node-20.10.7" + sources."acorn-8.11.3" + sources."acorn-walk-8.3.1" sources."ansi-escapes-4.3.2" sources."ansi-regex-5.0.1" sources."ansi-styles-4.3.0" @@ -71873,7 +73208,7 @@ in sources."clean-stack-3.0.1" sources."cli-cursor-3.1.0" sources."cli-progress-3.12.0" - sources."cli-spinners-2.9.1" + sources."cli-spinners-2.9.2" sources."cli-width-3.0.0" sources."clone-1.0.4" sources."color-convert-2.0.1" @@ -71899,7 +73234,7 @@ in sources."fast-glob-3.3.2" sources."fast-levenshtein-3.0.0" sources."fastest-levenshtein-1.0.16" - sources."fastq-1.15.0" + sources."fastq-1.16.0" (sources."figures-3.2.0" // { dependencies = [ sources."escape-string-regexp-1.0.5" @@ -71912,7 +73247,7 @@ in }) sources."filesize-6.4.0" sources."fill-range-7.0.1" - sources."follow-redirects-1.15.3" + sources."follow-redirects-1.15.4" sources."form-data-4.0.0" sources."fs-constants-1.0.0" sources."fs-extra-9.1.0" @@ -72014,11 +73349,11 @@ in sources."through-2.3.8" sources."tmp-0.0.33" sources."to-regex-range-5.0.1" - sources."ts-node-10.9.1" + sources."ts-node-10.9.2" sources."tslib-2.6.2" sources."tunnel-agent-0.6.0" sources."type-fest-0.21.3" - sources."typescript-5.3.2" + sources."typescript-5.3.3" sources."undici-types-5.26.5" sources."universalify-2.0.1" sources."util-deprecate-1.0.2" @@ -72045,10 +73380,10 @@ in elasticdump = nodeEnv.buildNodePackage { name = "elasticdump"; packageName = "elasticdump"; - version = "6.108.1"; + version = "6.110.0"; src = fetchurl { - url = "https://registry.npmjs.org/elasticdump/-/elasticdump-6.108.1.tgz"; - sha512 = "SazAOsEs5tVLY+mC50qBSf6Iqq8JJw8k9qE0c3hXM88waq3BBV8C/kZb+tkC3f80podsANNV9dpDgcGMiaBBRg=="; + url = "https://registry.npmjs.org/elasticdump/-/elasticdump-6.110.0.tgz"; + sha512 = "PxA3Q5OMndTlmFyrf7s/u+aAjOxQF+T5WIN3wzQUfwJ4gVSFC6qMuRT6Zhue24fDzE17v53voT572aooNCPYQw=="; }; dependencies = [ sources."@fast-csv/format-4.3.5" @@ -72231,24 +73566,24 @@ in "@electron-forge/cli" = nodeEnv.buildNodePackage { name = "_at_electron-forge_slash_cli"; packageName = "@electron-forge/cli"; - version = "7.1.0"; + version = "7.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/@electron-forge/cli/-/cli-7.1.0.tgz"; - sha512 = "+4PEscQxNP9syHA1NFHp2v3KVBrNBbtBEPL+g7/E2yc5yHJr1tb5aHIJvhyfQqxL5sQlUdNjZI6N4r3vRer2KA=="; + url = "https://registry.npmjs.org/@electron-forge/cli/-/cli-7.2.0.tgz"; + sha512 = "FJ8XzT4w6bTC3trvHHWL67W1zp7g2xmCC5riNa1rjk8Gd2C1j8wf0ul4ch9kbcaEAFaXuXwv98QKXxhCn4aLtQ=="; }; dependencies = [ - sources."@electron-forge/core-7.1.0" - sources."@electron-forge/core-utils-7.1.0" - sources."@electron-forge/maker-base-7.1.0" - sources."@electron-forge/plugin-base-7.1.0" - sources."@electron-forge/publisher-base-7.1.0" - sources."@electron-forge/shared-types-7.1.0" - sources."@electron-forge/template-base-7.1.0" - sources."@electron-forge/template-vite-7.1.0" - sources."@electron-forge/template-vite-typescript-7.1.0" - sources."@electron-forge/template-webpack-7.1.0" - sources."@electron-forge/template-webpack-typescript-7.1.0" - sources."@electron-forge/tracer-7.1.0" + sources."@electron-forge/core-7.2.0" + sources."@electron-forge/core-utils-7.2.0" + sources."@electron-forge/maker-base-7.2.0" + sources."@electron-forge/plugin-base-7.2.0" + sources."@electron-forge/publisher-base-7.2.0" + sources."@electron-forge/shared-types-7.2.0" + sources."@electron-forge/template-base-7.2.0" + sources."@electron-forge/template-vite-7.2.0" + sources."@electron-forge/template-vite-typescript-7.2.0" + sources."@electron-forge/template-webpack-7.2.0" + sources."@electron-forge/template-webpack-typescript-7.2.0" + sources."@electron-forge/tracer-7.2.0" (sources."@electron/asar-3.2.8" // { dependencies = [ sources."commander-5.1.0" @@ -72268,16 +73603,22 @@ in ]; }) sources."@electron/osx-sign-1.0.5" - (sources."@electron/packager-18.0.0" // { + (sources."@electron/packager-18.1.3" // { dependencies = [ - sources."fs-extra-11.1.1" + sources."fs-extra-11.2.0" ]; }) - sources."@electron/rebuild-3.3.0" - (sources."@electron/universal-1.5.1" // { + sources."@electron/rebuild-3.4.1" + (sources."@electron/universal-2.0.1" // { dependencies = [ - sources."@malept/cross-spawn-promise-1.1.1" - sources."fs-extra-9.1.0" + sources."brace-expansion-2.0.1" + sources."fs-extra-11.2.0" + sources."minimatch-9.0.3" + ]; + }) + (sources."@electron/windows-sign-1.0.0" // { + dependencies = [ + sources."fs-extra-11.2.0" ]; }) sources."@gar/promisify-1.1.3" @@ -72293,7 +73634,7 @@ in sources."@types/cacheable-request-6.0.3" sources."@types/http-cache-semantics-4.0.4" sources."@types/keyv-3.1.4" - sources."@types/node-20.9.3" + sources."@types/node-20.10.7" sources."@types/responselike-1.0.3" sources."@types/yauzl-2.10.3" sources."@xmldom/xmldom-0.8.10" @@ -72323,7 +73664,6 @@ in sources."braces-3.0.2" sources."buffer-5.7.1" sources."buffer-crc32-0.2.13" - sources."buffer-equal-1.0.1" sources."buffer-from-1.1.2" (sources."cacache-16.1.3" // { dependencies = [ @@ -72339,7 +73679,7 @@ in sources."chrome-trace-event-1.0.3" sources."clean-stack-2.2.0" sources."cli-cursor-3.1.0" - sources."cli-spinners-2.9.1" + sources."cli-spinners-2.9.2" sources."cli-truncate-2.1.0" sources."cliui-8.0.1" sources."clone-1.0.4" @@ -72375,7 +73715,7 @@ in sources."delegates-1.0.0" sources."detect-libc-2.0.2" sources."detect-node-2.1.0" - sources."dir-compare-3.3.0" + sources."dir-compare-4.2.0" sources."emoji-regex-8.0.0" sources."encoding-0.1.13" sources."end-of-stream-1.4.4" @@ -72401,7 +73741,7 @@ in sources."exponential-backoff-3.1.1" sources."extract-zip-2.0.1" sources."fast-glob-3.3.2" - sources."fastq-1.15.0" + sources."fastq-1.16.0" sources."fd-slicer-1.1.0" sources."filename-reserved-regex-2.0.0" sources."filenamify-4.3.0" @@ -72409,7 +73749,6 @@ in (sources."find-up-5.0.0" // { dependencies = [ sources."locate-path-6.0.0" - sources."p-limit-3.1.0" sources."p-locate-5.0.0" sources."path-exists-4.0.0" ]; @@ -72525,7 +73864,7 @@ in sources."ms-2.0.0" sources."negotiator-0.6.3" sources."nice-try-1.0.5" - sources."node-abi-3.51.0" + sources."node-abi-3.54.0" sources."node-api-version-0.1.4" sources."node-fetch-2.7.0" sources."node-gyp-9.4.1" @@ -72550,8 +73889,12 @@ in sources."p-defer-1.0.0" sources."p-finally-1.0.0" sources."p-is-promise-2.1.0" - sources."p-limit-1.3.0" - sources."p-locate-2.0.0" + sources."p-limit-3.1.0" + (sources."p-locate-2.0.0" // { + dependencies = [ + sources."p-limit-1.3.0" + ]; + }) sources."p-map-4.0.0" sources."p-try-1.0.0" sources."parse-author-2.0.0" @@ -72583,6 +73926,7 @@ in sources."queue-microtask-1.2.3" sources."quick-lru-5.1.1" sources."rcedit-4.0.1" + sources."read-binary-file-arch-1.0.6" sources."read-pkg-2.0.0" (sources."read-pkg-up-2.0.0" // { dependencies = [ @@ -72696,10 +74040,10 @@ in eas-cli = nodeEnv.buildNodePackage { name = "eas-cli"; packageName = "eas-cli"; - version = "5.9.1"; + version = "5.9.3"; src = fetchurl { - url = "https://registry.npmjs.org/eas-cli/-/eas-cli-5.9.1.tgz"; - sha512 = "t8AACBvPl6W3BLSRLU9+fVXa1tig25SOumrSzwQ67gqJ7vZAOnVz8NNB6OLcml+GjVh5mis5+7jgGnPYqe4adQ=="; + url = "https://registry.npmjs.org/eas-cli/-/eas-cli-5.9.3.tgz"; + sha512 = "ky+FR7Gg2gjR+miDHc1jHtZ/JHk5/KBw+Go3gMHcEIJUX49ME+LIO9itKSnK+Mo+BnOio+GLAZFYAKN2r4Nm1Q=="; }; dependencies = [ sources."@0no-co/graphql.web-1.0.4" @@ -72710,6 +74054,11 @@ in sources."chalk-2.4.2" ]; }) + (sources."@cspotcode/source-map-support-0.8.1" // { + dependencies = [ + sources."@jridgewell/trace-mapping-0.3.9" + ]; + }) sources."@expo/apple-utils-1.3.2" (sources."@expo/bunyan-4.0.0" // { dependencies = [ @@ -72728,18 +74077,18 @@ in ]; }) sources."@expo/config-types-49.0.0" - (sources."@expo/eas-build-job-1.0.48" // { + (sources."@expo/eas-build-job-1.0.50" // { dependencies = [ sources."joi-17.11.0" sources."semver-7.5.4" ]; }) - (sources."@expo/eas-json-5.7.0" // { + (sources."@expo/eas-json-5.9.3" // { dependencies = [ sources."@babel/code-frame-7.18.6" ]; }) - (sources."@expo/fingerprint-0.4.1" // { + (sources."@expo/fingerprint-0.6.0" // { dependencies = [ sources."minimatch-3.1.2" ]; @@ -72747,13 +74096,22 @@ in (sources."@expo/image-utils-0.3.22" // { dependencies = [ sources."@expo/spawn-async-1.5.0" + (sources."cross-spawn-6.0.5" // { + dependencies = [ + sources."semver-5.7.2" + ]; + }) sources."fs-extra-9.0.0" sources."mime-2.6.0" + sources."path-key-2.0.1" sources."semver-7.3.2" + sources."shebang-command-1.2.0" + sources."shebang-regex-1.0.0" + sources."which-1.3.1" ]; }) sources."@expo/json-file-8.2.37" - sources."@expo/logger-1.0.30" + sources."@expo/logger-1.0.37" sources."@expo/multipart-body-parser-1.1.0" sources."@expo/osascript-2.0.33" sources."@expo/package-manager-1.1.2" @@ -72764,8 +74122,39 @@ in sources."xmlbuilder-14.0.0" ]; }) - sources."@expo/plugin-help-5.1.22" - sources."@expo/plugin-warn-if-update-available-2.5.0" + (sources."@expo/plugin-help-5.1.23" // { + dependencies = [ + sources."@oclif/core-2.15.0" + sources."ansi-styles-4.3.0" + sources."cli-progress-3.12.0" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."emoji-regex-8.0.0" + sources."has-flag-4.0.0" + sources."string-width-4.2.3" + sources."strip-ansi-6.0.1" + sources."supports-color-8.1.1" + sources."tslib-2.6.2" + ]; + }) + (sources."@expo/plugin-warn-if-update-available-2.5.1" // { + dependencies = [ + (sources."@oclif/core-2.15.0" // { + dependencies = [ + sources."tslib-2.6.2" + ]; + }) + sources."ansi-styles-4.3.0" + sources."cli-progress-3.12.0" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."emoji-regex-8.0.0" + sources."has-flag-4.0.0" + sources."string-width-4.2.3" + sources."strip-ansi-6.0.1" + sources."supports-color-8.1.1" + ]; + }) (sources."@expo/prebuild-config-6.2.5" // { dependencies = [ sources."fs-extra-9.1.0" @@ -72780,31 +74169,25 @@ in ]; }) sources."@expo/sdk-runtime-versions-1.0.0" - (sources."@expo/spawn-async-1.7.0" // { - dependencies = [ - sources."cross-spawn-7.0.3" - sources."path-key-3.1.1" - sources."shebang-command-2.0.0" - sources."shebang-regex-3.0.0" - sources."which-2.0.2" - ]; - }) - (sources."@expo/steps-1.0.34" // { + sources."@expo/spawn-async-1.7.0" + (sources."@expo/steps-1.0.51" // { dependencies = [ sources."@expo/spawn-async-1.7.2" - sources."cross-spawn-7.0.3" - sources."fs-extra-11.1.1" + sources."arg-5.0.2" + sources."fs-extra-11.2.0" sources."joi-17.11.0" - sources."path-key-3.1.1" - sources."shebang-command-2.0.0" - sources."shebang-regex-3.0.0" sources."universalify-2.0.1" - sources."which-2.0.2" ]; }) sources."@expo/timeago.js-1.0.0" sources."@hapi/hoek-9.3.0" sources."@hapi/topo-5.1.0" + (sources."@isaacs/cliui-8.0.2" // { + dependencies = [ + sources."ansi-styles-6.2.1" + sources."wrap-ansi-8.1.0" + ]; + }) sources."@jridgewell/gen-mapping-0.3.3" sources."@jridgewell/resolve-uri-3.1.1" sources."@jridgewell/set-array-1.1.2" @@ -72813,22 +74196,34 @@ in sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" - (sources."@oclif/core-1.23.2" // { + (sources."@oclif/core-1.26.2" // { dependencies = [ sources."ansi-styles-4.3.0" sources."color-convert-2.0.1" sources."color-name-1.1.4" + sources."emoji-regex-8.0.0" sources."fs-extra-9.1.0" sources."has-flag-4.0.0" + sources."string-width-4.2.3" + sources."strip-ansi-6.0.1" sources."supports-color-8.1.1" sources."universalify-2.0.1" ]; }) sources."@oclif/linewrap-1.0.0" - (sources."@oclif/plugin-autocomplete-1.3.10" // { + (sources."@oclif/plugin-autocomplete-2.3.10" // { dependencies = [ - sources."fs-extra-9.1.0" - sources."universalify-2.0.1" + sources."@oclif/core-2.15.0" + sources."ansi-styles-4.3.0" + sources."cli-progress-3.12.0" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."emoji-regex-8.0.0" + sources."has-flag-4.0.0" + sources."string-width-4.2.3" + sources."strip-ansi-6.0.1" + sources."supports-color-8.1.1" + sources."tslib-2.6.2" ]; }) sources."@oclif/screen-3.0.8" @@ -72838,34 +74233,43 @@ in sources."@sideway/address-4.1.4" sources."@sideway/formula-3.0.1" sources."@sideway/pinpoint-2.0.0" + sources."@swc/core-1.3.102" + sources."@swc/counter-0.1.2" + sources."@swc/helpers-0.5.3" + sources."@swc/types-0.1.5" + sources."@swc/wasm-1.3.102" + sources."@tsconfig/node10-1.0.9" + sources."@tsconfig/node12-1.0.11" + sources."@tsconfig/node14-1.0.3" + sources."@tsconfig/node16-1.0.4" sources."@types/bunyan-1.8.11" - sources."@types/node-20.9.3" + sources."@types/cli-progress-3.11.5" + sources."@types/node-20.10.7" sources."@urql/core-4.0.11" sources."@urql/exchange-retry-1.2.0" sources."@xmldom/xmldom-0.8.10" + sources."acorn-8.11.3" + sources."acorn-walk-8.3.1" sources."agent-base-6.0.2" sources."ajv-8.11.0" sources."ajv-formats-2.1.1" - (sources."ansi-escapes-4.3.2" // { - dependencies = [ - sources."type-fest-0.21.3" - ]; - }) + sources."ansi-escapes-4.3.2" sources."ansi-regex-5.0.1" sources."ansi-styles-3.2.1" sources."ansicolors-0.3.2" sources."any-promise-1.3.0" - sources."arg-5.0.2" + sources."arg-4.1.3" sources."argparse-1.0.10" sources."array-union-2.1.0" sources."asn1-0.2.6" + sources."astral-regex-2.0.0" sources."async-3.2.5" sources."asynckit-0.4.0" sources."at-least-node-1.0.0" sources."balanced-match-1.0.2" sources."base64-js-1.5.1" sources."better-opn-3.0.2" - sources."big-integer-1.6.51" + sources."big-integer-1.6.52" sources."bplist-creator-0.1.1" sources."bplist-parser-0.3.2" sources."brace-expansion-1.1.11" @@ -72890,8 +74294,14 @@ in ]; }) sources."cli-cursor-3.1.0" - sources."cli-progress-3.11.2" - sources."cli-spinners-2.9.1" + (sources."cli-progress-3.11.2" // { + dependencies = [ + sources."emoji-regex-8.0.0" + sources."string-width-4.2.3" + sources."strip-ansi-6.0.1" + ]; + }) + sources."cli-spinners-2.9.2" sources."clone-1.0.4" sources."color-convert-1.9.3" sources."color-name-1.1.3" @@ -72900,11 +74310,8 @@ in sources."component-type-1.2.2" sources."concat-map-0.0.1" sources."content-type-1.0.5" - (sources."cross-spawn-6.0.5" // { - dependencies = [ - sources."semver-5.7.2" - ]; - }) + sources."create-require-1.1.1" + sources."cross-spawn-7.0.3" sources."crypt-0.0.2" sources."crypto-random-string-1.0.0" sources."dateformat-4.6.3" @@ -72913,12 +74320,14 @@ in sources."define-lazy-prop-2.0.0" sources."delayed-stream-1.0.0" sources."dicer-0.3.1" + sources."diff-4.0.2" sources."dir-glob-3.0.1" sources."domino-2.1.6" sources."dotenv-16.0.3" sources."dtrace-provider-0.8.8" + sources."eastasianwidth-0.2.0" sources."ejs-3.1.9" - sources."emoji-regex-8.0.0" + sources."emoji-regex-9.2.2" sources."encoding-0.1.13" sources."env-paths-2.2.0" sources."env-string-1.0.1" @@ -72928,26 +74337,31 @@ in sources."escape-string-regexp-1.0.5" sources."esprima-4.0.1" sources."exec-async-2.2.0" - (sources."expo-modules-autolinking-1.8.0" // { + (sources."expo-modules-autolinking-1.9.0" // { dependencies = [ - sources."@expo/config-8.4.0" - sources."@expo/config-plugins-7.6.0" - sources."@expo/config-types-50.0.0-alpha.3" + sources."@expo/config-8.5.3" + sources."@expo/config-plugins-7.8.3" + sources."@expo/config-types-50.0.0" + sources."@expo/json-file-8.3.0" + sources."@expo/plist-0.1.0" + sources."@xmldom/xmldom-0.7.13" sources."commander-7.2.0" sources."fs-extra-9.1.0" sources."semver-7.5.3" sources."universalify-2.0.1" + sources."xmlbuilder-14.0.0" ]; }) sources."fast-deep-equal-3.1.3" sources."fast-glob-3.2.12" - sources."fastq-1.15.0" + sources."fastq-1.16.0" sources."fetch-retry-4.1.1" sources."figures-3.2.0" sources."filelist-1.0.4" sources."fill-range-7.0.1" sources."find-up-5.0.0" sources."find-yarn-workspace-root-2.0.0" + sources."foreground-child-3.1.1" sources."form-data-4.0.0" (sources."fs-extra-10.1.0" // { dependencies = [ @@ -72998,6 +74412,7 @@ in sources."is-unicode-supported-0.1.0" sources."is-wsl-2.2.0" sources."isexe-2.0.0" + sources."jackspeak-2.3.6" (sources."jake-10.8.7" // { dependencies = [ sources."minimatch-3.1.2" @@ -73026,6 +74441,7 @@ in sources."lodash.merge-4.6.2" sources."log-symbols-4.1.0" sources."lru-cache-6.0.0" + sources."make-error-1.3.6" sources."md5-2.3.0" sources."merge2-1.4.1" sources."micromatch-4.0.5" @@ -73039,14 +74455,14 @@ in ]; }) sources."minimist-1.2.8" - sources."minipass-4.2.8" + sources."minipass-7.0.4" (sources."minizlib-2.1.2" // { dependencies = [ sources."minipass-3.3.6" ]; }) sources."mkdirp-0.5.6" - sources."moment-2.29.4" + sources."moment-2.30.1" sources."ms-2.1.2" sources."mute-stream-0.0.8" sources."mv-2.1.1" @@ -73071,7 +74487,11 @@ in sources."once-1.4.0" sources."onetime-5.1.2" sources."open-8.4.2" - sources."ora-5.1.0" + (sources."ora-5.1.0" // { + dependencies = [ + sources."strip-ansi-6.0.1" + ]; + }) sources."os-homedir-1.0.2" sources."os-tmpdir-1.0.2" sources."osenv-0.1.5" @@ -73084,18 +74504,15 @@ in sources."pngjs-3.4.0" ]; }) - (sources."password-prompt-1.1.3" // { + sources."password-prompt-1.1.3" + sources."path-exists-4.0.0" + sources."path-is-absolute-1.0.1" + sources."path-key-3.1.1" + (sources."path-scurry-1.10.1" // { dependencies = [ - sources."cross-spawn-7.0.3" - sources."path-key-3.1.1" - sources."shebang-command-2.0.0" - sources."shebang-regex-3.0.0" - sources."which-2.0.2" + sources."lru-cache-10.1.0" ]; }) - sources."path-exists-4.0.0" - sources."path-is-absolute-1.0.1" - sources."path-key-2.0.1" sources."path-type-4.0.0" sources."picomatch-2.3.1" sources."pirates-4.0.6" @@ -73119,7 +74536,11 @@ in sources."remove-trailing-slash-0.1.1" sources."require-from-string-2.0.2" sources."resolve-from-5.0.0" - sources."restore-cursor-3.1.0" + (sources."restore-cursor-3.1.0" // { + dependencies = [ + sources."signal-exit-3.0.7" + ]; + }) sources."retry-0.12.0" sources."reusify-1.0.4" (sources."rimraf-2.4.5" // { @@ -73134,21 +74555,45 @@ in sources."safer-buffer-2.1.2" sources."sax-1.3.0" sources."semver-7.5.2" - sources."shebang-command-1.2.0" - sources."shebang-regex-1.0.0" - sources."signal-exit-3.0.7" + sources."shebang-command-2.0.0" + sources."shebang-regex-3.0.0" + sources."signal-exit-4.1.0" sources."simple-plist-1.4.0" sources."sisteransi-1.0.5" sources."slash-3.0.0" + (sources."slice-ansi-4.0.0" // { + dependencies = [ + sources."ansi-styles-4.3.0" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + ]; + }) sources."slugify-1.6.6" sources."split-1.0.1" sources."sprintf-js-1.0.3" sources."stream-buffers-2.2.0" sources."streamsearch-1.1.0" - sources."string-width-4.2.3" - sources."strip-ansi-6.0.1" + sources."string-width-5.1.2" + (sources."string-width-cjs-4.2.3" // { + dependencies = [ + sources."emoji-regex-8.0.0" + sources."strip-ansi-6.0.1" + ]; + }) + (sources."strip-ansi-7.1.0" // { + dependencies = [ + sources."ansi-regex-6.0.1" + ]; + }) + sources."strip-ansi-cjs-6.0.1" sources."structured-headers-0.4.1" - sources."sucrase-3.34.0" + (sources."sucrase-3.35.0" // { + dependencies = [ + sources."brace-expansion-2.0.1" + sources."glob-10.3.10" + sources."minimatch-9.0.3" + ]; + }) sources."sudo-prompt-9.1.1" sources."supports-color-5.5.0" (sources."supports-hyperlinks-2.3.0" // { @@ -73159,11 +74604,16 @@ in }) (sources."tar-6.1.13" // { dependencies = [ + sources."minipass-4.2.8" sources."mkdirp-1.0.4" ]; }) sources."temp-dir-1.0.0" - sources."tempy-0.3.0" + (sources."tempy-0.3.0" // { + dependencies = [ + sources."type-fest-0.3.1" + ]; + }) sources."terminal-link-2.1.1" sources."thenify-3.3.1" sources."thenify-all-1.6.0" @@ -73172,32 +74622,59 @@ in sources."to-regex-range-5.0.1" sources."tr46-0.0.3" sources."ts-interface-checker-0.1.13" + sources."ts-node-10.9.2" sources."tslib-2.4.1" sources."tunnel-agent-0.6.0" sources."turndown-7.1.1" - sources."type-fest-0.3.1" + sources."type-fest-0.21.3" + sources."typescript-5.3.3" sources."undici-types-5.26.5" sources."unique-string-1.0.0" sources."universalify-1.0.0" sources."untildify-4.0.0" sources."uri-js-4.4.1" sources."uuid-9.0.0" + sources."v8-compile-cache-lib-3.0.1" sources."validate-npm-package-name-3.0.0" sources."wcwidth-1.0.1" sources."webidl-conversions-3.0.1" sources."whatwg-url-5.0.0" - sources."which-1.3.1" - sources."widest-line-3.1.0" + sources."which-2.0.2" + (sources."widest-line-3.1.0" // { + dependencies = [ + sources."emoji-regex-8.0.0" + sources."string-width-4.2.3" + sources."strip-ansi-6.0.1" + ]; + }) sources."wonka-6.3.4" + sources."wordwrap-1.0.0" (sources."wrap-ansi-7.0.0" // { dependencies = [ sources."ansi-styles-4.3.0" sources."color-convert-2.0.1" sources."color-name-1.1.4" + sources."emoji-regex-8.0.0" + sources."string-width-4.2.3" + sources."strip-ansi-6.0.1" + ]; + }) + (sources."wrap-ansi-cjs-7.0.0" // { + dependencies = [ + sources."ansi-styles-4.3.0" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."emoji-regex-8.0.0" + sources."string-width-4.2.3" + sources."strip-ansi-6.0.1" ]; }) sources."wrappy-1.0.2" - sources."write-file-atomic-2.4.3" + (sources."write-file-atomic-2.4.3" // { + dependencies = [ + sources."signal-exit-3.0.7" + ]; + }) (sources."xcode-3.0.1" // { dependencies = [ sources."uuid-7.0.3" @@ -73211,6 +74688,7 @@ in sources."xmlbuilder-15.1.1" sources."yallist-4.0.0" sources."yaml-2.3.4" + sources."yn-3.1.1" sources."yocto-queue-0.1.0" ]; buildInputs = globalBuildInputs; @@ -73252,8 +74730,8 @@ in dependencies = [ sources."@alcalzone/ansi-tokenize-0.1.3" sources."@types/prop-types-15.7.11" - sources."@types/react-18.2.38" - sources."@types/scheduler-0.16.7" + sources."@types/react-18.2.47" + sources."@types/scheduler-0.16.8" sources."ajv-8.12.0" sources."ajv-formats-2.1.1" (sources."ansi-escapes-6.2.0" // { @@ -73280,7 +74758,7 @@ in sources."conf-11.0.2" sources."convert-to-spaces-2.0.1" sources."cross-spawn-7.0.3" - sources."csstype-3.1.2" + sources."csstype-3.1.3" sources."debounce-fn-5.1.2" sources."dot-prop-7.2.0" sources."eastasianwidth-0.2.0" @@ -73325,8 +74803,8 @@ in sources."meow-12.1.1" sources."merge-stream-2.0.0" sources."mimic-fn-4.0.0" - sources."node-gyp-build-4.7.0" - (sources."npm-run-path-5.1.0" // { + sources."node-gyp-build-4.8.0" + (sources."npm-run-path-5.2.0" // { dependencies = [ sources."path-key-4.0.0" ]; @@ -73372,11 +74850,11 @@ in sources."unicode-emoji-modifier-base-1.0.0" sources."uri-js-4.4.1" sources."utf-8-validate-6.0.3" - sources."when-exit-2.1.1" + sources."when-exit-2.1.2" sources."which-2.0.2" sources."widest-line-4.0.1" sources."wrap-ansi-8.1.0" - sources."ws-8.14.2" + sources."ws-8.16.0" sources."yallist-4.0.0" sources."yoga-wasm-web-0.3.3" ]; @@ -73428,17 +74906,17 @@ in eslint = nodeEnv.buildNodePackage { name = "eslint"; packageName = "eslint"; - version = "8.54.0"; + version = "8.56.0"; src = fetchurl { - url = "https://registry.npmjs.org/eslint/-/eslint-8.54.0.tgz"; - sha512 = "NY0DfAkM8BIZDVl6PgSa1ttZbx3xHgJzSNJKYcQglem6CppHyMhRIQkBVSSMaSRnLhig3jsDbEzOjwCVt4AmmA=="; + url = "https://registry.npmjs.org/eslint/-/eslint-8.56.0.tgz"; + sha512 = "Go19xM6T9puCOWntie1/P997aXxFsOi37JIHRWI514Hc6ZnaHGKY9xFhrU65RT6CcBEzZoGG1e6Nq+DT04ZtZQ=="; }; dependencies = [ sources."@aashutoshrathi/word-wrap-1.2.6" sources."@eslint-community/eslint-utils-4.4.0" sources."@eslint-community/regexpp-4.10.0" - sources."@eslint/eslintrc-2.1.3" - sources."@eslint/js-8.54.0" + sources."@eslint/eslintrc-2.1.4" + sources."@eslint/js-8.56.0" sources."@humanwhocodes/config-array-0.11.13" sources."@humanwhocodes/module-importer-1.0.1" sources."@humanwhocodes/object-schema-2.0.1" @@ -73446,7 +74924,7 @@ in sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" sources."@ungap/structured-clone-1.2.0" - sources."acorn-8.11.2" + sources."acorn-8.11.3" sources."acorn-jsx-5.3.2" sources."ajv-6.12.6" sources."ansi-regex-5.0.1" @@ -73464,7 +74942,7 @@ in sources."deep-is-0.1.4" sources."doctrine-3.0.0" sources."escape-string-regexp-4.0.0" - sources."eslint-8.54.0" + sources."eslint-8.56.0" sources."eslint-scope-7.2.2" sources."eslint-visitor-keys-3.4.3" sources."espree-9.6.1" @@ -73475,7 +74953,7 @@ in sources."fast-deep-equal-3.1.3" sources."fast-json-stable-stringify-2.1.0" sources."fast-levenshtein-2.0.6" - sources."fastq-1.15.0" + sources."fastq-1.16.0" sources."file-entry-cache-6.0.1" sources."find-up-5.0.0" sources."flat-cache-3.2.0" @@ -73483,7 +74961,7 @@ in sources."fs.realpath-1.0.0" sources."glob-7.2.3" sources."glob-parent-6.0.2" - sources."globals-13.23.0" + sources."globals-13.24.0" sources."graphemer-1.4.0" sources."has-flag-4.0.0" sources."ignore-5.3.0" @@ -73572,26 +75050,26 @@ in dependencies = [ sources."@ampproject/remapping-2.2.1" sources."@babel/code-frame-7.10.4" - sources."@babel/compat-data-7.23.3" - (sources."@babel/core-7.23.3" // { + sources."@babel/compat-data-7.23.5" + (sources."@babel/core-7.23.7" // { dependencies = [ - sources."@babel/code-frame-7.23.4" + sources."@babel/code-frame-7.23.5" sources."chalk-2.4.2" sources."json5-2.2.3" sources."semver-6.3.1" ]; }) - sources."@babel/generator-7.23.4" + sources."@babel/generator-7.23.6" sources."@babel/helper-annotate-as-pure-7.22.5" sources."@babel/helper-builder-binary-assignment-operator-visitor-7.22.15" - (sources."@babel/helper-compilation-targets-7.22.15" // { + (sources."@babel/helper-compilation-targets-7.23.6" // { dependencies = [ sources."lru-cache-5.1.1" sources."semver-6.3.1" sources."yallist-3.1.1" ]; }) - (sources."@babel/helper-create-class-features-plugin-7.22.15" // { + (sources."@babel/helper-create-class-features-plugin-7.23.7" // { dependencies = [ sources."semver-6.3.1" ]; @@ -73601,7 +75079,7 @@ in sources."semver-6.3.1" ]; }) - sources."@babel/helper-define-polyfill-provider-0.4.3" + sources."@babel/helper-define-polyfill-provider-0.4.4" sources."@babel/helper-environment-visitor-7.22.20" sources."@babel/helper-function-name-7.23.0" sources."@babel/helper-hoist-variables-7.22.5" @@ -73617,21 +75095,21 @@ in sources."@babel/helper-split-export-declaration-7.22.6" sources."@babel/helper-string-parser-7.23.4" sources."@babel/helper-validator-identifier-7.22.20" - sources."@babel/helper-validator-option-7.22.15" + sources."@babel/helper-validator-option-7.23.5" sources."@babel/helper-wrap-function-7.22.20" - sources."@babel/helpers-7.23.4" + sources."@babel/helpers-7.23.7" (sources."@babel/highlight-7.23.4" // { dependencies = [ sources."chalk-2.4.2" ]; }) - sources."@babel/parser-7.23.4" + sources."@babel/parser-7.23.6" sources."@babel/plugin-bugfix-safari-id-destructuring-collision-in-function-expression-7.23.3" sources."@babel/plugin-bugfix-v8-spread-parameters-in-optional-chaining-7.23.3" - sources."@babel/plugin-bugfix-v8-static-class-fields-redefine-readonly-7.23.3" + sources."@babel/plugin-bugfix-v8-static-class-fields-redefine-readonly-7.23.7" sources."@babel/plugin-proposal-async-generator-functions-7.20.7" sources."@babel/plugin-proposal-class-properties-7.18.6" - sources."@babel/plugin-proposal-decorators-7.23.3" + sources."@babel/plugin-proposal-decorators-7.23.7" sources."@babel/plugin-proposal-export-default-from-7.23.3" sources."@babel/plugin-proposal-nullish-coalescing-operator-7.18.6" sources."@babel/plugin-proposal-object-rest-spread-7.20.7" @@ -73662,13 +75140,13 @@ in sources."@babel/plugin-syntax-typescript-7.23.3" sources."@babel/plugin-syntax-unicode-sets-regex-7.18.6" sources."@babel/plugin-transform-arrow-functions-7.23.3" - sources."@babel/plugin-transform-async-generator-functions-7.23.4" + sources."@babel/plugin-transform-async-generator-functions-7.23.7" sources."@babel/plugin-transform-async-to-generator-7.23.3" sources."@babel/plugin-transform-block-scoped-functions-7.23.3" sources."@babel/plugin-transform-block-scoping-7.23.4" sources."@babel/plugin-transform-class-properties-7.23.3" sources."@babel/plugin-transform-class-static-block-7.23.4" - sources."@babel/plugin-transform-classes-7.23.3" + sources."@babel/plugin-transform-classes-7.23.5" sources."@babel/plugin-transform-computed-properties-7.23.3" sources."@babel/plugin-transform-destructuring-7.23.3" sources."@babel/plugin-transform-dotall-regex-7.23.3" @@ -73677,7 +75155,7 @@ in sources."@babel/plugin-transform-exponentiation-operator-7.23.3" sources."@babel/plugin-transform-export-namespace-from-7.23.4" sources."@babel/plugin-transform-flow-strip-types-7.23.3" - sources."@babel/plugin-transform-for-of-7.23.3" + sources."@babel/plugin-transform-for-of-7.23.6" sources."@babel/plugin-transform-function-name-7.23.3" sources."@babel/plugin-transform-json-strings-7.23.4" sources."@babel/plugin-transform-literals-7.23.3" @@ -73705,7 +75183,7 @@ in sources."@babel/plugin-transform-react-jsx-source-7.23.3" sources."@babel/plugin-transform-regenerator-7.23.3" sources."@babel/plugin-transform-reserved-words-7.23.3" - (sources."@babel/plugin-transform-runtime-7.23.4" // { + (sources."@babel/plugin-transform-runtime-7.23.7" // { dependencies = [ sources."semver-6.3.1" ]; @@ -73715,12 +75193,12 @@ in sources."@babel/plugin-transform-sticky-regex-7.23.3" sources."@babel/plugin-transform-template-literals-7.23.3" sources."@babel/plugin-transform-typeof-symbol-7.23.3" - sources."@babel/plugin-transform-typescript-7.23.4" + sources."@babel/plugin-transform-typescript-7.23.6" sources."@babel/plugin-transform-unicode-escapes-7.23.3" sources."@babel/plugin-transform-unicode-property-regex-7.23.3" sources."@babel/plugin-transform-unicode-regex-7.23.3" sources."@babel/plugin-transform-unicode-sets-regex-7.23.3" - (sources."@babel/preset-env-7.23.3" // { + (sources."@babel/preset-env-7.23.7" // { dependencies = [ sources."semver-6.3.1" ]; @@ -73730,23 +75208,23 @@ in sources."@babel/runtime-7.9.0" (sources."@babel/template-7.22.15" // { dependencies = [ - sources."@babel/code-frame-7.23.4" + sources."@babel/code-frame-7.23.5" sources."chalk-2.4.2" ]; }) - (sources."@babel/traverse-7.23.4" // { + (sources."@babel/traverse-7.23.7" // { dependencies = [ - sources."@babel/code-frame-7.23.4" + sources."@babel/code-frame-7.23.5" sources."chalk-2.4.2" ]; }) - sources."@babel/types-7.23.4" + sources."@babel/types-7.23.6" sources."@colors/colors-1.5.0" sources."@expo/apple-utils-1.0.0" sources."@expo/bunyan-4.0.0" (sources."@expo/cli-0.7.3" // { dependencies = [ - sources."@babel/runtime-7.23.4" + sources."@babel/runtime-7.23.7" (sources."@expo/config-8.0.5" // { dependencies = [ sources."semver-7.3.2" @@ -73780,6 +75258,7 @@ in sources."universalify-2.0.1" ]; }) + sources."ansi-regex-5.0.1" sources."bplist-parser-0.3.2" sources."form-data-3.0.1" (sources."fs-extra-8.1.0" // { @@ -73788,13 +75267,14 @@ in ]; }) sources."jsonfile-4.0.0" + sources."lru-cache-6.0.0" sources."node-forge-1.3.1" (sources."npm-package-arg-7.0.0" // { dependencies = [ sources."semver-5.7.2" ]; }) - sources."regenerator-runtime-0.14.0" + sources."regenerator-runtime-0.14.1" sources."semver-6.3.1" sources."temp-dir-1.0.0" sources."type-fest-0.3.1" @@ -73815,6 +75295,7 @@ in dependencies = [ sources."@expo/json-file-8.2.36" sources."@expo/plist-0.0.18" + sources."lru-cache-6.0.0" sources."semver-7.5.4" ]; }) @@ -73844,6 +75325,7 @@ in sources."@expo/config-8.0.5" sources."@expo/config-plugins-6.0.2" sources."@expo/config-types-48.0.0" + sources."lru-cache-6.0.0" sources."semver-7.5.4" ]; }) @@ -73851,6 +75333,7 @@ in (sources."@expo/package-manager-0.0.56" // { dependencies = [ sources."@expo/json-file-8.2.36" + sources."ansi-regex-5.0.1" sources."npm-package-arg-7.0.0" sources."rimraf-3.0.2" sources."semver-5.7.2" @@ -73869,10 +75352,19 @@ in ]; }) sources."@expo/sdk-runtime-versions-1.0.0" - sources."@expo/spawn-async-1.5.0" + (sources."@expo/spawn-async-1.5.0" // { + dependencies = [ + sources."cross-spawn-6.0.5" + sources."path-key-2.0.1" + sources."semver-5.7.2" + sources."shebang-command-1.2.0" + sources."shebang-regex-1.0.0" + sources."which-1.3.1" + ]; + }) sources."@expo/vector-icons-13.0.0" sources."@expo/webpack-config-18.1.0" - (sources."@expo/xcpretty-4.2.2" // { + (sources."@expo/xcpretty-4.3.0" // { dependencies = [ sources."js-yaml-4.1.0" ]; @@ -73881,6 +75373,13 @@ in sources."@graphql-typed-document-node/core-3.2.0" sources."@hapi/hoek-9.3.0" sources."@hapi/topo-5.1.0" + (sources."@isaacs/cliui-8.0.2" // { + dependencies = [ + sources."ansi-styles-6.2.1" + sources."strip-ansi-7.1.0" + sources."wrap-ansi-8.1.0" + ]; + }) sources."@jest/types-26.6.2" sources."@jridgewell/gen-mapping-0.3.3" sources."@jridgewell/resolve-uri-3.1.1" @@ -73889,11 +75388,16 @@ in sources."@jridgewell/sourcemap-codec-1.4.15" sources."@jridgewell/trace-mapping-0.3.20" sources."@leichtgewicht/ip-codec-2.0.4" + sources."@module-federation/runtime-0.0.0-next-20231225095220" + sources."@module-federation/runtime-tools-0.0.0-next-20231225095220" + sources."@module-federation/sdk-0.0.0-next-20231225095220" + sources."@module-federation/webpack-bundler-runtime-0.0.0-next-20231225095220" sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" (sources."@npmcli/fs-1.1.1" // { dependencies = [ + sources."lru-cache-6.0.0" sources."semver-7.5.4" ]; }) @@ -73904,11 +75408,27 @@ in ]; }) sources."@react-native/normalize-color-2.1.0" + sources."@rspack/binding-0.4.5" + sources."@rspack/binding-darwin-arm64-0.4.5" + sources."@rspack/binding-darwin-x64-0.4.5" + sources."@rspack/binding-linux-arm64-gnu-0.4.5" + sources."@rspack/binding-linux-arm64-musl-0.4.5" + sources."@rspack/binding-linux-x64-gnu-0.4.5" + sources."@rspack/binding-linux-x64-musl-0.4.5" + sources."@rspack/binding-win32-arm64-msvc-0.4.5" + sources."@rspack/binding-win32-ia32-msvc-0.4.5" + sources."@rspack/binding-win32-x64-msvc-0.4.5" + (sources."@rspack/core-0.4.5" // { + dependencies = [ + sources."graceful-fs-4.2.10" + ]; + }) sources."@segment/loosely-validate-event-2.0.0" sources."@sideway/address-4.1.4" sources."@sideway/formula-3.0.1" sources."@sideway/pinpoint-2.0.0" sources."@sindresorhus/is-4.6.0" + sources."@swc/helpers-0.5.1" sources."@szmarczak/http-timer-4.0.6" sources."@trysound/sax-0.2.0" sources."@types/body-parser-1.19.5" @@ -73916,7 +75436,7 @@ in sources."@types/cacheable-request-6.0.3" sources."@types/connect-3.4.38" sources."@types/connect-history-api-fallback-1.5.4" - sources."@types/eslint-8.44.7" + sources."@types/eslint-8.56.1" sources."@types/eslint-scope-3.7.7" sources."@types/estree-1.0.5" sources."@types/express-4.17.21" @@ -73933,9 +75453,9 @@ in sources."@types/keyv-3.1.4" sources."@types/mime-1.3.5" sources."@types/minimatch-5.1.2" - sources."@types/node-20.9.3" - sources."@types/node-forge-1.3.10" - sources."@types/qs-6.9.10" + sources."@types/node-20.10.7" + sources."@types/node-forge-1.3.11" + sources."@types/qs-6.9.11" sources."@types/range-parser-1.2.7" sources."@types/responselike-1.0.3" sources."@types/retry-0.12.5" @@ -73968,7 +75488,7 @@ in sources."@xtuc/long-4.2.2" sources."abab-2.0.6" sources."accepts-1.3.8" - sources."acorn-8.11.2" + sources."acorn-8.11.3" sources."acorn-import-assertions-1.9.0" sources."agent-base-6.0.2" sources."aggregate-error-3.1.0" @@ -73980,14 +75500,19 @@ in sources."json-schema-traverse-0.4.1" ]; }) - sources."ansi-align-3.0.1" + (sources."ansi-align-3.0.1" // { + dependencies = [ + sources."emoji-regex-8.0.0" + sources."string-width-4.2.3" + ]; + }) (sources."ansi-escapes-4.3.2" // { dependencies = [ sources."type-fest-0.21.3" ]; }) sources."ansi-html-community-0.0.8" - sources."ansi-regex-5.0.1" + sources."ansi-regex-6.0.1" sources."ansi-styles-3.2.1" sources."any-promise-1.3.0" sources."anymatch-3.1.3" @@ -74005,20 +75530,20 @@ in sources."axios-0.21.1" sources."babel-loader-8.3.0" sources."babel-plugin-module-resolver-4.1.0" - (sources."babel-plugin-polyfill-corejs2-0.4.6" // { + (sources."babel-plugin-polyfill-corejs2-0.4.7" // { dependencies = [ sources."semver-6.3.1" ]; }) - sources."babel-plugin-polyfill-corejs3-0.8.6" - sources."babel-plugin-polyfill-regenerator-0.5.3" + sources."babel-plugin-polyfill-corejs3-0.8.7" + sources."babel-plugin-polyfill-regenerator-0.5.4" sources."babel-plugin-react-native-web-0.18.12" sources."babel-preset-expo-9.3.2" sources."balanced-match-1.0.2" sources."base64-js-1.5.1" sources."batch-0.6.1" sources."better-opn-3.0.2" - sources."big-integer-1.6.51" + sources."big-integer-1.6.52" sources."big.js-5.2.2" sources."binary-extensions-2.2.0" sources."blueimp-md5-2.19.0" @@ -74028,14 +75553,12 @@ in sources."ms-2.0.0" ]; }) - (sources."bonjour-service-1.1.1" // { - dependencies = [ - sources."array-flatten-2.1.2" - ]; - }) + sources."bonjour-service-1.2.0" sources."boolbase-1.0.0" (sources."boxen-5.1.2" // { dependencies = [ + sources."emoji-regex-8.0.0" + sources."string-width-4.2.3" sources."type-fest-0.20.2" ]; }) @@ -74043,7 +75566,7 @@ in sources."bplist-parser-0.2.0" sources."brace-expansion-1.1.11" sources."braces-3.0.2" - sources."browserslist-4.22.1" + sources."browserslist-4.22.2" sources."buffer-alloc-1.2.0" sources."buffer-alloc-unsafe-1.1.0" sources."buffer-fill-1.0.0" @@ -74053,6 +75576,7 @@ in sources."bytes-3.1.2" (sources."cacache-15.3.0" // { dependencies = [ + sources."lru-cache-6.0.0" sources."mkdirp-1.0.4" sources."rimraf-3.0.2" ]; @@ -74064,7 +75588,7 @@ in sources."camel-case-4.1.2" sources."camelcase-6.3.0" sources."caniuse-api-3.0.0" - sources."caniuse-lite-1.0.30001563" + sources."caniuse-lite-1.0.30001575" (sources."chalk-4.1.2" // { dependencies = [ sources."ansi-styles-4.3.0" @@ -74079,7 +75603,7 @@ in sources."chownr-2.0.0" sources."chrome-trace-event-1.0.3" sources."ci-info-3.9.0" - sources."clean-css-5.3.2" + sources."clean-css-5.3.3" sources."clean-stack-2.2.0" (sources."clean-webpack-plugin-4.0.0" // { dependencies = [ @@ -74093,8 +75617,13 @@ in }) sources."cli-boxes-2.2.1" sources."cli-cursor-2.1.0" - sources."cli-spinners-2.9.1" - sources."cli-table3-0.6.3" + sources."cli-spinners-2.9.2" + (sources."cli-table3-0.6.3" // { + dependencies = [ + sources."emoji-regex-8.0.0" + sources."string-width-4.2.3" + ]; + }) sources."clone-1.0.4" sources."clone-response-1.0.3" sources."color-convert-1.9.3" @@ -74105,7 +75634,7 @@ in sources."command-exists-1.2.9" sources."commander-2.17.1" sources."commondir-1.0.1" - sources."compare-versions-3.6.0" + sources."compare-versions-6.0.0-rc.1" sources."component-type-1.2.2" sources."compressible-2.0.18" (sources."compression-1.7.4" // { @@ -74140,19 +75669,16 @@ in sources."slash-4.0.0" ]; }) - sources."core-js-compat-3.33.3" + sources."core-js-compat-3.35.0" sources."core-util-is-1.0.3" sources."cross-fetch-3.1.8" - (sources."cross-spawn-6.0.5" // { - dependencies = [ - sources."semver-5.7.2" - ]; - }) + sources."cross-spawn-7.0.3" sources."crypt-0.0.2" sources."crypto-random-string-1.0.0" sources."css-declaration-sorter-6.4.1" (sources."css-loader-6.8.1" // { dependencies = [ + sources."lru-cache-6.0.0" sources."semver-7.5.4" ]; }) @@ -74196,7 +75722,6 @@ in sources."destroy-1.2.0" sources."detect-node-2.1.0" sources."dir-glob-3.0.1" - sources."dns-equal-1.0.0" sources."dns-packet-5.6.1" sources."dom-converter-0.2.0" sources."dom-serializer-1.4.1" @@ -74206,9 +75731,10 @@ in sources."domutils-2.8.0" sources."dot-case-3.0.4" sources."duplexer3-0.1.5" + sources."eastasianwidth-0.2.0" sources."ee-first-1.1.1" - sources."electron-to-chromium-1.4.589" - sources."emoji-regex-8.0.0" + sources."electron-to-chromium-1.4.623" + sources."emoji-regex-9.2.2" sources."emojis-list-3.0.0" sources."encodeurl-1.0.2" (sources."encoding-0.1.13" // { @@ -74217,7 +75743,7 @@ in ]; }) sources."end-of-stream-1.4.4" - sources."enhanced-resolve-5.15.0" + sources."enhanced-resolve-5.12.0" sources."entities-2.2.0" sources."env-editor-0.4.2" sources."eol-0.9.1" @@ -74240,13 +75766,19 @@ in sources."exec-async-2.2.0" (sources."execa-1.0.0" // { dependencies = [ + sources."cross-spawn-6.0.5" sources."get-stream-4.1.0" sources."is-stream-1.1.0" + sources."path-key-2.0.1" + sources."semver-5.7.2" + sources."shebang-command-1.2.0" + sources."shebang-regex-1.0.0" + sources."which-1.3.1" ]; }) (sources."expo-48.0.21" // { dependencies = [ - sources."@babel/runtime-7.23.4" + sources."@babel/runtime-7.23.7" (sources."@expo/config-8.0.5" // { dependencies = [ sources."semver-7.3.2" @@ -74255,11 +75787,21 @@ in sources."@expo/config-plugins-6.0.2" sources."@expo/config-types-48.0.0" sources."commander-7.2.0" + (sources."cross-spawn-6.0.5" // { + dependencies = [ + sources."semver-5.7.2" + ]; + }) sources."expo-modules-autolinking-1.2.0" sources."fs-extra-9.1.0" - sources."regenerator-runtime-0.14.0" + sources."lru-cache-6.0.0" + sources."path-key-2.0.1" + sources."regenerator-runtime-0.14.1" sources."semver-7.5.4" + sources."shebang-command-1.2.0" + sources."shebang-regex-1.0.0" sources."uuid-3.4.0" + sources."which-1.3.1" ]; }) sources."expo-application-5.1.1" @@ -74270,6 +75812,7 @@ in sources."@expo/config-types-48.0.0" sources."expo-constants-14.3.0" sources."expo-file-system-15.3.0" + sources."lru-cache-6.0.0" sources."semver-7.5.4" sources."uuid-3.4.0" ]; @@ -74279,6 +75822,7 @@ in sources."@expo/config-8.0.5" sources."@expo/config-plugins-6.0.2" sources."@expo/config-types-48.0.0" + sources."lru-cache-6.0.0" sources."semver-7.5.4" sources."uuid-3.4.0" ]; @@ -74296,7 +75840,11 @@ in sources."fs-extra-9.1.0" ]; }) - sources."expo-modules-core-1.2.7" + (sources."expo-modules-core-1.2.7" // { + dependencies = [ + sources."compare-versions-3.6.0" + ]; + }) (sources."expo-pwa-0.0.125" // { dependencies = [ sources."@expo/image-utils-0.3.23" @@ -74331,7 +75879,7 @@ in sources."fast-deep-equal-3.1.3" sources."fast-glob-3.3.2" sources."fast-json-stable-stringify-2.1.0" - sources."fastq-1.15.0" + sources."fastq-1.16.0" sources."faye-websocket-0.11.4" sources."fbemitter-3.0.0" sources."fbjs-3.0.5" @@ -74355,8 +75903,13 @@ in sources."find-cache-dir-3.3.2" sources."find-up-5.0.0" sources."find-yarn-workspace-root-2.0.0" - sources."follow-redirects-1.15.3" + sources."follow-redirects-1.15.4" sources."fontfaceobserver-2.3.0" + (sources."foreground-child-3.1.1" // { + dependencies = [ + sources."signal-exit-4.1.0" + ]; + }) sources."form-data-2.5.1" sources."forwarded-0.2.0" sources."freeport-async-2.0.0" @@ -74395,7 +75948,11 @@ in sources."hashids-1.1.4" sources."hasown-2.0.0" sources."he-1.2.0" - sources."hosted-git-info-3.0.8" + (sources."hosted-git-info-3.0.8" // { + dependencies = [ + sources."lru-cache-6.0.0" + ]; + }) sources."hpack.js-2.1.6" sources."html-entities-2.4.0" (sources."html-minifier-terser-6.1.0" // { @@ -74403,7 +75960,7 @@ in sources."commander-8.3.0" ]; }) - sources."html-webpack-plugin-5.5.3" + sources."html-webpack-plugin-5.6.0" sources."htmlparser2-6.1.0" sources."http-cache-semantics-4.1.1" sources."http-deceiver-1.2.7" @@ -74479,6 +76036,7 @@ in sources."is-wsl-2.2.0" sources."isarray-1.0.0" sources."isexe-2.0.0" + sources."jackspeak-2.3.6" (sources."jest-worker-27.5.1" // { dependencies = [ sources."has-flag-4.0.0" @@ -74496,7 +76054,7 @@ in }) sources."jsesc-2.5.2" sources."json-buffer-3.0.1" - sources."json-parse-even-better-errors-2.3.1" + sources."json-parse-even-better-errors-3.0.1" (sources."json-schema-deref-sync-0.13.0" // { dependencies = [ sources."clone-2.1.2" @@ -74534,7 +76092,7 @@ in sources."loose-envify-1.4.0" sources."lower-case-2.0.2" sources."lowercase-keys-2.0.0" - sources."lru-cache-6.0.0" + sources."lru-cache-10.1.0" (sources."make-dir-3.1.0" // { dependencies = [ sources."semver-6.3.1" @@ -74551,7 +76109,11 @@ in sources."merge-stream-2.0.0" sources."merge2-1.4.1" sources."methods-1.1.2" - sources."metro-react-native-babel-preset-0.73.9" + (sources."metro-react-native-babel-preset-0.73.9" // { + dependencies = [ + sources."react-refresh-0.4.3" + ]; + }) sources."micromatch-4.0.5" sources."mime-2.6.0" sources."mime-db-1.52.0" @@ -74591,9 +76153,9 @@ in sources."no-case-3.0.4" sources."node-fetch-2.7.0" sources."node-forge-0.10.0" - sources."node-gyp-build-4.7.0" + sources."node-gyp-build-4.8.0" sources."node-html-parser-5.4.2" - sources."node-releases-2.0.13" + sources."node-releases-2.0.14" sources."normalize-path-3.0.0" sources."normalize-url-6.1.0" (sources."npm-package-arg-6.1.0" // { @@ -74602,7 +76164,11 @@ in sources."semver-5.7.2" ]; }) - sources."npm-run-path-2.0.2" + (sources."npm-run-path-2.0.2" // { + dependencies = [ + sources."path-key-2.0.1" + ]; + }) sources."nth-check-2.1.1" sources."nullthrows-1.1.1" sources."object-assign-4.1.1" @@ -74666,21 +76232,18 @@ in sources."parse-png-2.1.0" sources."parseurl-1.3.3" sources."pascal-case-3.1.2" - (sources."password-prompt-1.1.3" // { - dependencies = [ - sources."cross-spawn-7.0.3" - sources."path-key-3.1.1" - sources."shebang-command-2.0.0" - sources."shebang-regex-3.0.0" - sources."which-2.0.2" - ]; - }) + sources."password-prompt-1.1.3" sources."path-browserify-1.0.1" sources."path-exists-4.0.0" sources."path-is-absolute-1.0.1" sources."path-is-inside-1.0.2" - sources."path-key-2.0.1" + sources."path-key-3.1.1" sources."path-parse-1.0.7" + (sources."path-scurry-1.10.1" // { + dependencies = [ + sources."minipass-7.0.4" + ]; + }) sources."path-to-regexp-0.1.7" sources."path-type-4.0.0" sources."picocolors-1.0.0" @@ -74713,7 +76276,7 @@ in ]; }) sources."pngjs-3.4.0" - sources."postcss-8.4.31" + sources."postcss-8.4.33" sources."postcss-calc-8.2.4" sources."postcss-colormin-5.3.1" sources."postcss-convert-values-5.1.3" @@ -74729,7 +76292,7 @@ in sources."postcss-minify-selectors-5.2.1" sources."postcss-modules-extract-imports-3.0.0" sources."postcss-modules-local-by-default-4.0.3" - sources."postcss-modules-scope-3.0.0" + sources."postcss-modules-scope-3.1.0" sources."postcss-modules-values-4.0.0" sources."postcss-normalize-charset-5.1.0" sources."postcss-normalize-display-values-5.1.0" @@ -74743,7 +76306,7 @@ in sources."postcss-ordered-values-5.1.3" sources."postcss-reduce-initial-5.1.2" sources."postcss-reduce-transforms-5.1.0" - sources."postcss-selector-parser-6.0.13" + sources."postcss-selector-parser-6.0.15" sources."postcss-svgo-5.1.0" sources."postcss-unique-selectors-5.1.1" sources."postcss-value-parser-4.2.0" @@ -74752,6 +76315,7 @@ in sources."pretty-error-4.0.0" (sources."pretty-format-26.6.2" // { dependencies = [ + sources."ansi-regex-5.0.1" sources."ansi-styles-4.3.0" sources."color-convert-2.0.1" sources."color-name-1.1.4" @@ -74776,7 +76340,7 @@ in sources."raw-body-2.5.2" sources."rc-1.2.8" sources."react-is-17.0.2" - sources."react-refresh-0.4.3" + sources."react-refresh-0.14.0" sources."read-chunk-3.2.0" sources."read-last-lines-1.6.0" (sources."readable-stream-2.3.8" // { @@ -74881,8 +76445,8 @@ in sources."set-function-length-1.1.1" sources."setimmediate-1.0.5" sources."setprototypeof-1.2.0" - sources."shebang-command-1.2.0" - sources."shebang-regex-1.0.0" + sources."shebang-command-2.0.0" + sources."shebang-regex-3.0.0" sources."shell-quote-1.8.1" sources."side-channel-1.0.4" sources."signal-exit-3.0.7" @@ -74926,22 +76490,44 @@ in sources."ms-2.0.0" ]; }) - sources."string-width-4.2.3" + (sources."string-width-5.1.2" // { + dependencies = [ + sources."strip-ansi-7.1.0" + ]; + }) + (sources."string-width-cjs-4.2.3" // { + dependencies = [ + sources."emoji-regex-8.0.0" + ]; + }) (sources."string_decoder-1.1.1" // { dependencies = [ sources."safe-buffer-5.1.2" ]; }) - sources."strip-ansi-6.0.1" + (sources."strip-ansi-6.0.1" // { + dependencies = [ + sources."ansi-regex-5.0.1" + ]; + }) + (sources."strip-ansi-cjs-6.0.1" // { + dependencies = [ + sources."ansi-regex-5.0.1" + ]; + }) sources."strip-eof-1.0.0" sources."strip-final-newline-2.0.0" sources."strip-json-comments-2.0.1" sources."structured-headers-0.4.1" sources."style-loader-3.3.3" sources."stylehacks-5.1.1" - (sources."sucrase-3.34.0" // { + (sources."sucrase-3.35.0" // { dependencies = [ + sources."brace-expansion-2.0.1" sources."commander-4.1.1" + sources."glob-10.3.10" + sources."minimatch-9.0.3" + sources."minipass-7.0.4" ]; }) sources."sudo-prompt-9.1.1" @@ -74974,13 +76560,13 @@ in ]; }) sources."terminal-link-2.1.1" - (sources."terser-5.24.0" // { + (sources."terser-5.26.0" // { dependencies = [ sources."commander-2.20.3" sources."source-map-support-0.5.21" ]; }) - (sources."terser-webpack-plugin-5.3.9" // { + (sources."terser-webpack-plugin-5.3.10" // { dependencies = [ sources."ajv-6.12.6" sources."json-schema-traverse-0.4.1" @@ -74998,7 +76584,7 @@ in sources."to-regex-range-5.0.1" sources."toidentifier-1.0.1" sources."tr46-0.0.3" - sources."traverse-0.6.7" + sources."traverse-0.6.8" sources."tree-kill-1.2.2" sources."ts-interface-checker-0.1.13" sources."tslib-2.6.2" @@ -75043,9 +76629,10 @@ in (sources."webpack-5.89.0" // { dependencies = [ sources."ajv-6.12.6" + sources."enhanced-resolve-5.15.0" + sources."json-parse-even-better-errors-2.3.1" sources."json-schema-traverse-0.4.1" sources."schema-utils-3.3.0" - sources."webpack-sources-3.2.3" ]; }) (sources."webpack-dev-middleware-5.3.3" // { @@ -75061,7 +76648,6 @@ in sources."body-parser-1.20.1" sources."content-disposition-0.5.4" sources."cookie-0.5.0" - sources."cross-spawn-7.0.3" sources."debug-2.6.9" sources."default-gateway-6.0.3" sources."execa-5.1.1" @@ -75074,24 +76660,29 @@ in sources."npm-run-path-4.0.1" sources."onetime-5.1.2" sources."p-retry-4.6.2" - sources."path-key-3.1.1" sources."raw-body-2.5.1" sources."retry-0.13.1" sources."rimraf-3.0.2" sources."schema-utils-4.2.0" sources."serve-static-1.15.0" - sources."shebang-command-2.0.0" - sources."shebang-regex-3.0.0" - sources."which-2.0.2" ]; }) - sources."webpack-manifest-plugin-4.1.1" - sources."webpack-sources-2.3.1" + (sources."webpack-manifest-plugin-4.1.1" // { + dependencies = [ + sources."webpack-sources-2.3.1" + ]; + }) + sources."webpack-sources-3.2.3" sources."websocket-driver-0.7.4" sources."websocket-extensions-0.1.4" sources."whatwg-url-5.0.0" - sources."which-1.3.1" - sources."widest-line-3.1.0" + sources."which-2.0.2" + (sources."widest-line-3.1.0" // { + dependencies = [ + sources."emoji-regex-8.0.0" + sources."string-width-4.2.3" + ]; + }) sources."with-open-file-0.1.7" sources."wonka-4.0.15" (sources."wrap-ansi-7.0.0" // { @@ -75099,11 +76690,22 @@ in sources."ansi-styles-4.3.0" sources."color-convert-2.0.1" sources."color-name-1.1.4" + sources."emoji-regex-8.0.0" + sources."string-width-4.2.3" + ]; + }) + (sources."wrap-ansi-cjs-7.0.0" // { + dependencies = [ + sources."ansi-styles-4.3.0" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."emoji-regex-8.0.0" + sources."string-width-4.2.3" ]; }) sources."wrappy-1.0.2" sources."write-file-atomic-2.4.3" - sources."ws-8.14.2" + sources."ws-8.16.0" (sources."xcode-3.0.1" // { dependencies = [ sources."uuid-7.0.3" @@ -75125,6 +76727,8 @@ in sources."yallist-4.0.0" sources."yaml-1.10.2" sources."yocto-queue-0.1.0" + sources."zod-3.22.4" + sources."zod-validation-error-1.3.1" ]; buildInputs = globalBuildInputs; meta = { @@ -75146,12 +76750,12 @@ in }; dependencies = [ sources."@ampproject/remapping-2.2.1" - sources."@babel/code-frame-7.23.4" - sources."@babel/compat-data-7.23.3" - sources."@babel/core-7.23.3" - sources."@babel/generator-7.23.4" + sources."@babel/code-frame-7.23.5" + sources."@babel/compat-data-7.23.5" + sources."@babel/core-7.23.7" + sources."@babel/generator-7.23.6" sources."@babel/helper-annotate-as-pure-7.22.5" - sources."@babel/helper-compilation-targets-7.22.15" + sources."@babel/helper-compilation-targets-7.23.6" sources."@babel/helper-environment-visitor-7.22.20" sources."@babel/helper-function-name-7.23.0" sources."@babel/helper-hoist-variables-7.22.5" @@ -75162,10 +76766,10 @@ in sources."@babel/helper-split-export-declaration-7.22.6" sources."@babel/helper-string-parser-7.23.4" sources."@babel/helper-validator-identifier-7.22.20" - sources."@babel/helper-validator-option-7.22.15" - sources."@babel/helpers-7.23.4" + sources."@babel/helper-validator-option-7.23.5" + sources."@babel/helpers-7.23.7" sources."@babel/highlight-7.23.4" - sources."@babel/parser-7.23.4" + sources."@babel/parser-7.23.6" sources."@babel/plugin-proposal-object-rest-spread-7.20.7" sources."@babel/plugin-syntax-jsx-7.23.3" sources."@babel/plugin-syntax-object-rest-spread-7.8.3" @@ -75173,19 +76777,19 @@ in sources."@babel/plugin-transform-parameters-7.23.3" sources."@babel/plugin-transform-react-jsx-7.23.4" sources."@babel/template-7.22.15" - sources."@babel/traverse-7.23.4" - sources."@babel/types-7.23.4" + sources."@babel/traverse-7.23.7" + sources."@babel/types-7.23.6" sources."@jridgewell/gen-mapping-0.3.3" sources."@jridgewell/resolve-uri-3.1.1" sources."@jridgewell/set-array-1.1.2" sources."@jridgewell/sourcemap-codec-1.4.15" sources."@jridgewell/trace-mapping-0.3.20" sources."@types/minimist-1.2.5" - sources."@types/node-20.9.3" + sources."@types/node-20.10.7" sources."@types/normalize-package-data-2.4.4" sources."@types/prop-types-15.7.11" - sources."@types/react-18.2.38" - sources."@types/scheduler-0.16.7" + sources."@types/react-18.2.47" + sources."@types/scheduler-0.16.8" sources."@types/yauzl-2.10.3" sources."@types/yoga-layout-1.9.2" sources."agent-base-6.0.2" @@ -75203,7 +76807,7 @@ in sources."base64-js-1.5.1" sources."bl-4.1.0" sources."brace-expansion-1.1.11" - sources."browserslist-4.22.1" + sources."browserslist-4.22.2" sources."buffer-5.7.1" sources."buffer-crc32-0.2.13" sources."bufferutil-4.0.8" @@ -75212,13 +76816,13 @@ in sources."callsites-3.1.0" sources."camelcase-5.3.1" sources."camelcase-keys-6.2.2" - sources."caniuse-lite-1.0.30001563" + sources."caniuse-lite-1.0.30001575" sources."chalk-2.4.2" sources."chownr-1.1.4" sources."ci-info-2.0.0" sources."cli-boxes-2.2.1" sources."cli-cursor-3.1.0" - sources."cli-spinners-2.9.1" + sources."cli-spinners-2.9.2" sources."cli-truncate-2.1.0" sources."code-excerpt-3.0.0" sources."color-convert-1.9.3" @@ -75228,7 +76832,7 @@ in sources."convert-source-map-2.0.0" sources."convert-to-spaces-1.0.2" sources."cross-fetch-3.1.5" - sources."csstype-3.1.2" + sources."csstype-3.1.3" sources."debug-4.3.4" sources."decamelize-1.2.0" (sources."decamelize-keys-1.1.1" // { @@ -75238,7 +76842,7 @@ in }) sources."delay-5.0.0" sources."devtools-protocol-0.0.981744" - sources."electron-to-chromium-1.4.589" + sources."electron-to-chromium-1.4.623" sources."emoji-regex-8.0.0" sources."encoding-0.1.13" sources."end-of-stream-1.4.4" @@ -75312,8 +76916,8 @@ in sources."mkdirp-classic-0.5.3" sources."ms-2.1.2" sources."node-fetch-2.6.7" - sources."node-gyp-build-4.7.0" - sources."node-releases-2.0.13" + sources."node-gyp-build-4.8.0" + sources."node-releases-2.0.14" (sources."normalize-package-data-3.0.3" // { dependencies = [ sources."lru-cache-6.0.0" @@ -75480,21 +77084,21 @@ in sources."@oclif/plugin-help-5.2.20" sources."@oclif/plugin-plugins-2.4.7" sources."@oclif/screen-1.0.4" - sources."@swc/core-1.3.99" + sources."@swc/core-1.3.102" sources."@swc/counter-0.1.2" sources."@swc/helpers-0.5.3" sources."@swc/types-0.1.5" - sources."@swc/wasm-1.3.99" + sources."@swc/wasm-1.3.102" sources."@tsconfig/node10-1.0.9" sources."@tsconfig/node12-1.0.11" sources."@tsconfig/node14-1.0.3" sources."@tsconfig/node16-1.0.4" sources."@types/cli-progress-3.11.5" sources."@types/mute-stream-0.0.4" - sources."@types/node-20.9.3" + sources."@types/node-20.10.7" sources."@types/wrap-ansi-3.0.0" - sources."acorn-8.11.2" - sources."acorn-walk-8.3.0" + sources."acorn-8.11.3" + sources."acorn-walk-8.3.1" sources."ansi-align-3.0.1" sources."ansi-escapes-4.3.2" sources."ansi-regex-5.0.1" @@ -75536,7 +77140,7 @@ in sources."cli-boxes-2.2.1" sources."cli-cursor-3.1.0" sources."cli-progress-3.12.0" - sources."cli-spinners-2.9.1" + sources."cli-spinners-2.9.2" sources."cli-table-0.3.11" (sources."cli-ux-4.9.3" // { dependencies = [ @@ -75575,7 +77179,7 @@ in sources."create-require-1.1.1" sources."cross-fetch-3.1.8" sources."cross-spawn-7.0.3" - sources."csv-parse-5.5.2" + sources."csv-parse-5.5.3" sources."csv-stream-0.2.0" sources."debug-4.3.4" sources."deep-is-0.1.4" @@ -75602,7 +77206,7 @@ in sources."extract-stack-1.0.0" sources."fast-glob-3.3.2" sources."fast-levenshtein-2.0.6" - sources."fastq-1.15.0" + sources."fastq-1.16.0" sources."faunadb-4.8.0" sources."figures-3.2.0" (sources."filelist-1.0.4" // { @@ -75670,7 +77274,7 @@ in sources."brace-expansion-1.1.11" ]; }) - sources."moment-2.29.4" + sources."moment-2.30.1" sources."ms-2.1.2" sources."mute-stream-1.0.0" sources."natural-orderby-2.0.3" @@ -75732,12 +77336,12 @@ in sources."to-regex-range-5.0.1" sources."tr46-0.0.3" sources."treeify-1.1.0" - sources."ts-node-10.9.1" + sources."ts-node-10.9.2" sources."tslib-2.6.2" sources."tunnel-agent-0.6.0" sources."type-check-0.3.2" sources."type-fest-0.21.3" - sources."typescript-5.3.2" + sources."typescript-5.3.3" sources."undici-types-5.26.5" sources."universalify-2.0.1" sources."util-deprecate-1.0.2" @@ -75835,7 +77439,7 @@ in sources."chardet-0.7.0" sources."clean-stack-5.2.0" sources."cli-cursor-3.1.0" - sources."cli-spinners-2.9.1" + sources."cli-spinners-2.9.2" sources."cli-truncate-4.0.0" sources."cli-width-4.1.0" sources."clone-1.0.4" @@ -75845,7 +77449,7 @@ in sources."defaults-1.0.4" sources."define-data-property-1.1.1" sources."emoji-regex-10.3.0" - sources."esc-exit-3.0.0" + sources."esc-exit-3.0.1" sources."escape-string-regexp-5.0.0" sources."execa-8.0.1" sources."external-editor-3.1.0" @@ -75900,7 +77504,7 @@ in sources."merge-stream-2.0.0" sources."mimic-fn-4.0.0" sources."mute-stream-1.0.0" - (sources."npm-run-path-5.1.0" // { + (sources."npm-run-path-5.2.0" // { dependencies = [ sources."path-key-4.0.0" ]; @@ -75992,12 +77596,12 @@ in sources."@ethereumjs/util-8.1.0" sources."@noble/curves-1.1.0" sources."@noble/hashes-1.3.1" - sources."@scure/base-1.1.3" + sources."@scure/base-1.1.5" sources."@scure/bip32-1.3.1" sources."@scure/bip39-1.2.1" sources."@types/atob-2.1.4" sources."@types/inquirer-6.5.0" - sources."@types/node-20.9.3" + sources."@types/node-20.10.7" sources."@types/through-0.0.33" sources."ajv-6.12.6" sources."ansi-escapes-4.3.2" @@ -76117,7 +77721,7 @@ in sources."qs-6.5.3" sources."querystring-0.2.1" sources."randombytes-2.1.0" - sources."reflect-metadata-0.1.13" + sources."reflect-metadata-0.1.14" sources."request-2.88.2" sources."request-promise-4.2.6" sources."request-promise-core-1.1.4" @@ -76421,7 +78025,7 @@ in sources."object-is-1.1.5" sources."object-keys-1.1.1" sources."object-visit-1.0.1" - sources."object.assign-4.1.4" + sources."object.assign-4.1.5" sources."object.pick-1.3.0" sources."once-1.4.0" sources."one-time-1.0.0" @@ -76598,10 +78202,10 @@ in ganache = nodeEnv.buildNodePackage { name = "ganache"; packageName = "ganache"; - version = "7.9.1"; + version = "7.9.2"; src = fetchurl { - url = "https://registry.npmjs.org/ganache/-/ganache-7.9.1.tgz"; - sha512 = "Tqhd4J3cpiLeYTD6ek/zlchSB107IVPMIm4ypyg+xz1sdkeALUnYYZnmY4Bdjqj3i6QwtlZPCu7U4qKy7HlWTA=="; + url = "https://registry.npmjs.org/ganache/-/ganache-7.9.2.tgz"; + sha512 = "7gsVVDpO9AhrFyDMWWl7SpMsPpqGcnAzjxz3k32LheIPNd64p2XsY9GYRdhWmKuryb60W1iaWPZWDkFKlbRWHA=="; }; dependencies = [ (sources."@trufflesuite/uws-js-unofficial-20.30.0-unofficial.0" // { @@ -76612,7 +78216,7 @@ in }) sources."@types/bn.js-5.1.5" sources."@types/lru-cache-5.1.1" - sources."@types/node-20.9.3" + sources."@types/node-20.10.7" sources."@types/seedrandom-3.0.1" sources."abstract-level-1.0.3" (sources."abstract-leveldown-7.2.0" // { @@ -76634,7 +78238,7 @@ in sources."level-transcoder-1.0.1" sources."lodash-4.17.21" sources."module-error-1.0.2" - sources."node-gyp-build-4.7.0" + sources."node-gyp-build-4.8.0" sources."queue-microtask-1.2.3" sources."undici-types-5.26.5" sources."utf-8-validate-5.0.7" @@ -76653,32 +78257,32 @@ in gatsby-cli = nodeEnv.buildNodePackage { name = "gatsby-cli"; packageName = "gatsby-cli"; - version = "5.12.4"; + version = "5.13.1"; src = fetchurl { - url = "https://registry.npmjs.org/gatsby-cli/-/gatsby-cli-5.12.4.tgz"; - sha512 = "GD+otyd5LlgSbYK4ODrKyAise/k32G7Qy7H/k+gJ2P8DCG9sU+j//2zNwF7mY8C5dl0SpROqFTL+I0Y1DK4tmQ=="; + url = "https://registry.npmjs.org/gatsby-cli/-/gatsby-cli-5.13.1.tgz"; + sha512 = "8BEdbNC8A6Q/s/WBRbRYiTE+B5OR+dB9Ka+qkYHIPBHmW0VuQnhWElYiPX7Nd3ffW3KNmL8BDU3Ns9Hhm66cyA=="; }; dependencies = [ sources."@ampproject/remapping-2.2.1" - (sources."@babel/code-frame-7.23.4" // { + (sources."@babel/code-frame-7.23.5" // { dependencies = [ sources."chalk-2.4.2" ]; }) - sources."@babel/compat-data-7.23.3" - (sources."@babel/core-7.23.3" // { + sources."@babel/compat-data-7.23.5" + (sources."@babel/core-7.23.7" // { dependencies = [ sources."semver-6.3.1" ]; }) - sources."@babel/generator-7.23.4" + sources."@babel/generator-7.23.6" sources."@babel/helper-annotate-as-pure-7.22.5" - (sources."@babel/helper-compilation-targets-7.22.15" // { + (sources."@babel/helper-compilation-targets-7.23.6" // { dependencies = [ sources."semver-6.3.1" ]; }) - (sources."@babel/helper-create-class-features-plugin-7.22.15" // { + (sources."@babel/helper-create-class-features-plugin-7.23.7" // { dependencies = [ sources."semver-6.3.1" ]; @@ -76697,23 +78301,23 @@ in sources."@babel/helper-split-export-declaration-7.22.6" sources."@babel/helper-string-parser-7.23.4" sources."@babel/helper-validator-identifier-7.22.20" - sources."@babel/helper-validator-option-7.22.15" - sources."@babel/helpers-7.23.4" + sources."@babel/helper-validator-option-7.23.5" + sources."@babel/helpers-7.23.7" (sources."@babel/highlight-7.23.4" // { dependencies = [ sources."chalk-2.4.2" ]; }) - sources."@babel/parser-7.23.4" + sources."@babel/parser-7.23.6" sources."@babel/plugin-syntax-jsx-7.23.3" sources."@babel/plugin-syntax-typescript-7.23.3" sources."@babel/plugin-transform-modules-commonjs-7.23.3" - sources."@babel/plugin-transform-typescript-7.23.4" + sources."@babel/plugin-transform-typescript-7.23.6" sources."@babel/preset-typescript-7.23.3" - sources."@babel/runtime-7.23.4" + sources."@babel/runtime-7.23.7" sources."@babel/template-7.22.15" - sources."@babel/traverse-7.23.4" - sources."@babel/types-7.23.4" + sources."@babel/traverse-7.23.7" + sources."@babel/types-7.23.6" sources."@hapi/hoek-9.3.0" sources."@hapi/topo-5.1.0" sources."@jridgewell/gen-mapping-0.3.3" @@ -76739,8 +78343,8 @@ in sources."@types/common-tags-1.8.4" sources."@types/http-cache-semantics-4.0.4" sources."@types/keyv-3.1.4" - sources."@types/node-20.9.3" - sources."@types/node-fetch-2.6.9" + sources."@types/node-20.10.7" + sources."@types/node-fetch-2.6.10" sources."@types/responselike-1.0.3" sources."@types/yoga-layout-1.9.2" sources."ansi-align-3.0.1" @@ -76751,14 +78355,13 @@ in }) sources."ansi-regex-2.1.1" sources."ansi-styles-3.2.1" - sources."arch-2.2.0" sources."asynckit-0.4.0" sources."balanced-match-1.0.2" sources."better-opn-2.1.1" sources."boolbase-1.0.0" sources."boxen-5.1.2" sources."brace-expansion-1.1.11" - sources."browserslist-4.22.1" + sources."browserslist-4.22.2" sources."cacheable-lookup-5.0.4" (sources."cacheable-request-7.0.4" // { dependencies = [ @@ -76766,7 +78369,7 @@ in ]; }) sources."camelcase-6.3.0" - sources."caniuse-lite-1.0.30001563" + sources."caniuse-lite-1.0.30001575" (sources."chalk-4.1.2" // { dependencies = [ sources."ansi-styles-4.3.0" @@ -76781,9 +78384,11 @@ in sources."cli-boxes-2.2.1" sources."cli-cursor-3.1.0" sources."cli-width-3.0.0" - (sources."clipboardy-2.3.0" // { + (sources."clipboardy-4.0.0" // { dependencies = [ - sources."execa-1.0.0" + sources."execa-8.0.1" + sources."is-wsl-3.1.0" + sources."signal-exit-4.1.0" ]; }) (sources."cliui-6.0.0" // { @@ -76803,12 +78408,8 @@ in sources."configstore-5.0.1" sources."convert-hrtime-3.0.0" sources."convert-source-map-2.0.0" - sources."create-gatsby-3.12.3" - (sources."cross-spawn-6.0.5" // { - dependencies = [ - sources."semver-5.7.2" - ]; - }) + sources."create-gatsby-3.13.0" + sources."cross-spawn-7.0.3" sources."crypto-random-string-2.0.0" sources."css-select-4.3.0" sources."css-what-6.1.0" @@ -76827,7 +78428,7 @@ in sources."domhandler-4.3.1" sources."domutils-2.8.0" sources."dot-prop-5.3.0" - sources."electron-to-chromium-1.4.589" + sources."electron-to-chromium-1.4.623" sources."emoji-regex-8.0.0" sources."encoding-0.1.13" sources."end-of-stream-1.4.4" @@ -76837,14 +78438,13 @@ in sources."escape-string-regexp-1.0.5" (sources."execa-5.1.1" // { dependencies = [ - sources."cross-spawn-7.0.3" sources."get-stream-6.0.1" + sources."human-signals-2.1.0" sources."is-stream-2.0.1" + sources."mimic-fn-2.1.0" sources."npm-run-path-4.0.1" - sources."path-key-3.1.1" - sources."shebang-command-2.0.0" - sources."shebang-regex-3.0.0" - sources."which-2.0.2" + sources."onetime-5.1.2" + sources."strip-final-newline-2.0.0" ]; }) (sources."external-editor-3.1.0" // { @@ -76853,19 +78453,19 @@ in sources."tmp-0.0.33" ]; }) - sources."fastq-1.15.0" + sources."fastq-1.16.0" sources."figures-3.2.0" sources."file-type-16.5.4" sources."find-up-4.1.0" sources."form-data-4.0.0" sources."fs-exists-cached-1.0.0" - sources."fs-extra-11.1.1" + sources."fs-extra-11.2.0" sources."fs.realpath-1.0.0" - sources."gatsby-core-utils-4.12.1" - sources."gatsby-telemetry-4.12.1" + sources."gatsby-core-utils-4.13.0" + sources."gatsby-telemetry-4.13.0" sources."gensync-1.0.0-beta.2" sources."get-caller-file-2.0.5" - sources."get-stream-4.1.0" + sources."get-stream-8.0.1" sources."git-up-7.0.0" sources."glob-7.2.3" sources."globals-11.12.0" @@ -76882,7 +78482,7 @@ in sources."htmlparser2-6.1.0" sources."http-cache-semantics-4.1.1" sources."http2-wrapper-1.0.3" - sources."human-signals-2.1.0" + sources."human-signals-5.0.0" sources."iconv-lite-0.6.3" sources."ieee754-1.2.1" sources."import-from-4.0.0" @@ -76895,13 +78495,19 @@ in sources."is-extglob-1.0.0" sources."is-fullwidth-code-point-3.0.0" sources."is-glob-2.0.1" + (sources."is-inside-container-1.0.0" // { + dependencies = [ + sources."is-docker-3.0.0" + ]; + }) sources."is-invalid-path-0.1.0" sources."is-obj-2.0.0" sources."is-ssh-1.4.0" - sources."is-stream-1.1.0" + sources."is-stream-3.0.0" sources."is-typedarray-1.0.0" sources."is-valid-path-0.1.1" sources."is-wsl-2.2.0" + sources."is64bit-2.0.0" sources."isexe-2.0.0" sources."joi-17.11.0" sources."js-tokens-4.0.0" @@ -76925,29 +78531,31 @@ in sources."merge-stream-2.0.0" sources."mime-db-1.52.0" sources."mime-types-2.1.35" - sources."mimic-fn-2.1.0" + sources."mimic-fn-4.0.0" sources."mimic-response-1.0.1" sources."minimatch-3.1.2" sources."ms-2.1.2" - sources."msgpackr-1.9.9" + sources."msgpackr-1.10.1" sources."mute-stream-0.0.8" - sources."nice-try-1.0.5" sources."node-addon-api-4.3.0" sources."node-fetch-2.7.0" sources."node-gyp-build-optional-packages-5.0.3" sources."node-object-hash-2.3.10" - sources."node-releases-2.0.13" + sources."node-releases-2.0.14" sources."normalize-url-6.1.0" - sources."npm-run-path-2.0.2" + (sources."npm-run-path-5.2.0" // { + dependencies = [ + sources."path-key-4.0.0" + ]; + }) sources."nth-check-2.1.1" sources."once-1.4.0" - sources."onetime-5.1.2" + sources."onetime-6.0.0" sources."open-7.4.2" sources."opentracing-0.14.7" - sources."ordered-binary-1.4.1" + sources."ordered-binary-1.5.1" sources."os-tmpdir-1.0.2" sources."p-cancelable-2.1.1" - sources."p-finally-1.0.0" sources."p-limit-2.3.0" sources."p-locate-4.1.0" sources."p-try-2.2.0" @@ -76955,7 +78563,7 @@ in sources."parse-url-8.1.0" sources."path-exists-4.0.0" sources."path-is-absolute-1.0.1" - sources."path-key-2.0.1" + sources."path-key-3.1.1" sources."peek-readable-4.1.0" sources."picocolors-1.0.0" sources."pretty-error-2.1.2" @@ -76969,7 +78577,7 @@ in sources."readable-stream-3.6.2" sources."readable-web-to-node-stream-3.0.2" sources."redux-4.2.1" - sources."regenerator-runtime-0.14.0" + sources."regenerator-runtime-0.14.1" (sources."renderkid-2.0.7" // { dependencies = [ sources."strip-ansi-3.0.1" @@ -76981,7 +78589,12 @@ in sources."resolve-cwd-3.0.0" sources."resolve-from-5.0.0" sources."responselike-2.0.1" - sources."restore-cursor-3.1.0" + (sources."restore-cursor-3.1.0" // { + dependencies = [ + sources."mimic-fn-2.1.0" + sources."onetime-5.1.2" + ]; + }) sources."retry-0.12.0" sources."reusify-1.0.4" sources."rimraf-3.0.2" @@ -76996,8 +78609,8 @@ in ]; }) sources."set-blocking-2.0.0" - sources."shebang-command-1.2.0" - sources."shebang-regex-1.0.0" + sources."shebang-command-2.0.0" + sources."shebang-regex-3.0.0" sources."signal-exit-3.0.7" sources."sisteransi-1.0.5" sources."stack-trace-0.0.10" @@ -77008,10 +78621,10 @@ in sources."ansi-regex-5.0.1" ]; }) - sources."strip-eof-1.0.0" - sources."strip-final-newline-2.0.0" + sources."strip-final-newline-3.0.0" sources."strtok3-6.3.0" sources."supports-color-5.5.0" + sources."system-architecture-0.1.0" sources."through-2.3.8" sources."tmp-0.2.1" sources."to-fast-properties-2.0.0" @@ -77029,7 +78642,7 @@ in sources."weak-lru-cache-1.2.2" sources."webidl-conversions-3.0.1" sources."whatwg-url-5.0.0" - sources."which-1.3.1" + sources."which-2.0.2" sources."which-module-2.0.1" sources."widest-line-3.1.0" (sources."wrap-ansi-7.0.0" // { @@ -77156,15 +78769,15 @@ in "@gitbeaker/cli" = nodeEnv.buildNodePackage { name = "_at_gitbeaker_slash_cli"; packageName = "@gitbeaker/cli"; - version = "39.24.0"; + version = "39.28.0"; src = fetchurl { - url = "https://registry.npmjs.org/@gitbeaker/cli/-/cli-39.24.0.tgz"; - sha512 = "YUDR6NfJ+UgmAX013i/ZjLVdXii8t50Z5Ip9JTWK90rIRqHKkXGGpEBN4Rj491vwFiG3TcaiqAGzHwWNGzEbng=="; + url = "https://registry.npmjs.org/@gitbeaker/cli/-/cli-39.28.0.tgz"; + sha512 = "7pF5QWOhP1iPJuKDKvd1CdoeRRMiNXNrZO7rOMmzaMYATaXKODWfqnLQTKFZYDc/wf07xAINS8vc2PlwEcmzww=="; }; dependencies = [ - sources."@gitbeaker/core-39.24.0" - sources."@gitbeaker/requester-utils-39.24.0" - sources."@gitbeaker/rest-39.24.0" + sources."@gitbeaker/core-39.28.0" + sources."@gitbeaker/requester-utils-39.28.0" + sources."@gitbeaker/rest-39.28.0" sources."ansi-styles-4.3.0" sources."async-sema-3.1.1" sources."braces-3.0.2" @@ -77346,7 +78959,7 @@ in sources."unbzip2-stream-1.4.3" sources."util-deprecate-1.0.2" sources."webidl-conversions-3.0.1" - sources."whatwg-fetch-3.6.19" + sources."whatwg-fetch-3.6.20" sources."whatwg-url-5.0.0" sources."wrap-ansi-7.0.0" sources."wrappy-1.0.2" @@ -77388,7 +79001,7 @@ in sources."idb-keyval-6.2.1" sources."inversify-6.0.2" sources."node-fetch-2.7.0" - sources."reflect-metadata-0.1.13" + sources."reflect-metadata-0.1.14" sources."safer-buffer-2.1.2" sources."tr46-0.0.3" sources."vscode-jsonrpc-6.0.0" @@ -77438,7 +79051,7 @@ in }; dependencies = [ sources."@ardatan/aggregate-error-0.0.6" - (sources."@babel/code-frame-7.23.4" // { + (sources."@babel/code-frame-7.23.5" // { dependencies = [ sources."ansi-styles-3.2.1" sources."chalk-2.4.2" @@ -77556,7 +79169,7 @@ in sources."@nodelib/fs.walk-1.2.8" sources."@sindresorhus/is-0.14.0" sources."@szmarczak/http-timer-1.1.2" - sources."@types/node-20.9.3" + sources."@types/node-20.10.7" sources."@types/parse-json-4.0.2" sources."@types/websocket-1.0.2" sources."abort-controller-3.0.0" @@ -77607,7 +79220,7 @@ in sources."chownr-2.0.0" sources."clean-stack-2.2.0" sources."cli-cursor-2.1.0" - sources."cli-spinners-2.9.1" + sources."cli-spinners-2.9.2" sources."cli-width-3.0.0" (sources."cliui-8.0.1" // { dependencies = [ @@ -77673,7 +79286,7 @@ in sources."fast-glob-3.3.2" sources."fast-json-stable-stringify-2.1.0" sources."fast-safe-stringify-2.1.1" - sources."fastq-1.15.0" + sources."fastq-1.16.0" sources."figlet-1.5.0" sources."figures-3.2.0" sources."fill-range-7.0.1" @@ -77847,7 +79460,7 @@ in sources."node-emoji-1.10.0" sources."node-fetch-2.6.1" sources."node-fetch-h2-2.3.0" - sources."node-gyp-build-4.7.0" + sources."node-gyp-build-4.8.0" sources."node-readfiles-0.2.0" sources."normalize-path-2.1.1" sources."normalize-url-4.5.1" @@ -77865,7 +79478,7 @@ in sources."object-inspect-1.13.1" sources."object-is-1.1.5" sources."object-keys-1.1.1" - sources."object.assign-4.1.4" + sources."object.assign-4.1.5" sources."once-1.4.0" sources."onetime-2.0.1" sources."open-7.3.0" @@ -78042,11 +79655,11 @@ in dependencies = [ sources."@ampproject/remapping-2.2.1" sources."@ardatan/sync-fetch-0.0.1" - sources."@babel/code-frame-7.23.4" - sources."@babel/compat-data-7.23.3" - sources."@babel/core-7.23.3" - sources."@babel/generator-7.23.4" - sources."@babel/helper-compilation-targets-7.22.15" + sources."@babel/code-frame-7.23.5" + sources."@babel/compat-data-7.23.5" + sources."@babel/core-7.23.7" + sources."@babel/generator-7.23.6" + sources."@babel/helper-compilation-targets-7.23.6" sources."@babel/helper-environment-visitor-7.22.20" sources."@babel/helper-function-name-7.23.0" sources."@babel/helper-hoist-variables-7.22.5" @@ -78057,31 +79670,31 @@ in sources."@babel/helper-split-export-declaration-7.22.6" sources."@babel/helper-string-parser-7.23.4" sources."@babel/helper-validator-identifier-7.22.20" - sources."@babel/helper-validator-option-7.22.15" - sources."@babel/helpers-7.23.4" + sources."@babel/helper-validator-option-7.23.5" + sources."@babel/helpers-7.23.7" sources."@babel/highlight-7.23.4" - sources."@babel/parser-7.23.4" + sources."@babel/parser-7.23.6" sources."@babel/plugin-syntax-import-assertions-7.23.3" sources."@babel/polyfill-7.12.1" sources."@babel/template-7.22.15" - sources."@babel/traverse-7.23.4" - sources."@babel/types-7.23.4" + sources."@babel/traverse-7.23.7" + sources."@babel/types-7.23.6" sources."@graphql-tools/batch-execute-9.0.2" sources."@graphql-tools/code-file-loader-8.0.1" sources."@graphql-tools/delegate-10.0.3" sources."@graphql-tools/executor-1.2.0" sources."@graphql-tools/executor-graphql-ws-1.1.1" - sources."@graphql-tools/executor-http-1.0.3" - sources."@graphql-tools/executor-legacy-ws-1.0.4" + sources."@graphql-tools/executor-http-1.0.6" + sources."@graphql-tools/executor-legacy-ws-1.0.5" sources."@graphql-tools/graphql-file-loader-8.0.0" sources."@graphql-tools/graphql-tag-pluck-8.0.1" sources."@graphql-tools/import-7.0.0" sources."@graphql-tools/json-file-loader-8.0.0" - sources."@graphql-tools/load-8.0.0" - sources."@graphql-tools/merge-9.0.0" - sources."@graphql-tools/schema-10.0.0" - sources."@graphql-tools/url-loader-8.0.0" - sources."@graphql-tools/utils-10.0.8" + sources."@graphql-tools/load-8.0.1" + sources."@graphql-tools/merge-9.0.1" + sources."@graphql-tools/schema-10.0.2" + sources."@graphql-tools/url-loader-8.0.1" + sources."@graphql-tools/utils-10.0.12" sources."@graphql-tools/wrap-10.0.1" sources."@graphql-typed-document-node/core-3.2.0" sources."@iarna/toml-2.2.5" @@ -78090,25 +79703,25 @@ in sources."@jridgewell/set-array-1.1.2" sources."@jridgewell/sourcemap-codec-1.4.15" sources."@jridgewell/trace-mapping-0.3.20" + sources."@kamilkisiela/fast-url-parser-1.1.4" sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" sources."@repeaterjs/repeater-3.0.5" sources."@types/estree-1.0.5" - sources."@types/node-20.9.3" + sources."@types/node-20.10.7" sources."@types/ws-8.5.10" sources."@types/yargs-16.0.5" sources."@types/yargs-parser-21.0.3" - sources."@vue/compiler-core-3.3.8" - sources."@vue/compiler-dom-3.3.8" - sources."@vue/compiler-sfc-3.3.8" - sources."@vue/compiler-ssr-3.3.8" - sources."@vue/reactivity-transform-3.3.8" - sources."@vue/shared-3.3.8" + sources."@vue/compiler-core-3.4.5" + sources."@vue/compiler-dom-3.4.5" + sources."@vue/compiler-sfc-3.4.5" + sources."@vue/compiler-ssr-3.4.5" + sources."@vue/shared-3.4.5" sources."@whatwg-node/events-0.1.1" - sources."@whatwg-node/fetch-0.9.14" - sources."@whatwg-node/node-fetch-0.5.0" - sources."acorn-8.11.2" + sources."@whatwg-node/fetch-0.9.15" + sources."@whatwg-node/node-fetch-0.5.3" + sources."acorn-8.11.3" sources."ansi-regex-5.0.1" sources."ansi-styles-3.2.1" sources."argparse-2.0.1" @@ -78118,11 +79731,11 @@ in sources."balanced-match-1.0.2" sources."brace-expansion-1.1.11" sources."braces-3.0.2" - sources."browserslist-4.22.1" + sources."browserslist-4.22.2" sources."bufferutil-4.0.8" sources."busboy-1.6.0" sources."callsites-3.1.0" - sources."caniuse-lite-1.0.30001563" + sources."caniuse-lite-1.0.30001575" sources."chalk-2.4.2" sources."cliui-7.0.4" (sources."code-red-1.0.4" // { @@ -78146,9 +79759,10 @@ in sources."dir-glob-3.0.1" sources."dotenv-10.0.0" sources."dset-3.1.3" - sources."electron-to-chromium-1.4.589" + sources."electron-to-chromium-1.4.623" sources."emoji-regex-8.0.0" sources."encoding-0.1.13" + sources."entities-4.5.0" sources."error-ex-1.3.2" sources."escalade-3.1.1" sources."escape-string-regexp-1.0.5" @@ -78157,8 +79771,7 @@ in sources."fast-decode-uri-component-1.0.1" sources."fast-glob-3.3.2" sources."fast-querystring-1.1.2" - sources."fast-url-parser-1.1.3" - sources."fastq-1.15.0" + sources."fastq-1.16.0" sources."fill-range-7.0.1" sources."fs.realpath-1.0.0" sources."gensync-1.0.0-beta.2" @@ -78175,7 +79788,7 @@ in }) sources."graphql-language-service-5.2.0" sources."graphql-language-service-server-2.11.6" - sources."graphql-ws-5.14.2" + sources."graphql-ws-5.14.3" sources."has-flag-3.0.0" sources."iconv-lite-0.6.3" sources."ignore-5.3.0" @@ -78215,8 +79828,8 @@ in sources."no-case-3.0.4" sources."node-abort-controller-3.1.1" sources."node-fetch-2.7.0" - sources."node-gyp-build-4.7.0" - sources."node-releases-2.0.13" + sources."node-gyp-build-4.8.0" + sources."node-releases-2.0.14" sources."normalize-path-2.1.1" sources."nullthrows-1.1.1" sources."once-1.4.0" @@ -78233,8 +79846,7 @@ in }) sources."picocolors-1.0.0" sources."picomatch-2.3.1" - sources."postcss-8.4.31" - sources."punycode-1.4.1" + sources."postcss-8.4.33" sources."queue-microtask-1.2.3" sources."regenerator-runtime-0.13.11" sources."remove-trailing-separator-1.1.0" @@ -78251,17 +79863,17 @@ in sources."string-width-4.2.3" sources."strip-ansi-6.0.1" sources."supports-color-5.5.0" - (sources."svelte-4.2.7" // { + (sources."svelte-4.2.8" // { dependencies = [ sources."estree-walker-3.0.3" ]; }) - sources."svelte2tsx-0.6.25" + sources."svelte2tsx-0.6.27" sources."to-fast-properties-2.0.0" sources."to-regex-range-5.0.1" sources."tr46-0.0.3" sources."tslib-2.6.2" - sources."typescript-5.3.2" + sources."typescript-5.3.3" sources."undici-types-5.26.5" sources."unixify-1.0.0" sources."update-browserslist-db-1.0.13" @@ -78288,7 +79900,7 @@ in ]; }) sources."wrappy-1.0.2" - sources."ws-8.14.2" + sources."ws-8.16.0" sources."y18n-5.0.8" sources."yallist-3.1.1" sources."yargs-16.2.0" @@ -78758,7 +80370,7 @@ in }) sources."object-keys-1.1.1" sources."object-visit-1.0.1" - sources."object.assign-4.1.4" + sources."object.assign-4.1.5" sources."object.defaults-1.1.0" sources."object.map-1.0.1" sources."object.pick-1.3.0" @@ -79134,7 +80746,7 @@ in }) sources."object-keys-1.1.1" sources."object-visit-1.0.1" - sources."object.assign-4.1.4" + sources."object.assign-4.1.5" sources."object.defaults-1.1.0" sources."object.map-1.0.1" sources."object.pick-1.3.0" @@ -79283,69 +80895,6 @@ in bypassCache = true; reconstructLock = true; }; - http-server = nodeEnv.buildNodePackage { - name = "http-server"; - packageName = "http-server"; - version = "14.1.1"; - src = fetchurl { - url = "https://registry.npmjs.org/http-server/-/http-server-14.1.1.tgz"; - sha512 = "+cbxadF40UXd9T01zUHgA+rlo2Bg1Srer4+B4NwIHdaGxAGGv59nYRnGGDJ9LBk7alpS0US+J+bLLdQOOkJq4A=="; - }; - dependencies = [ - sources."ansi-styles-4.3.0" - sources."async-2.6.4" - sources."basic-auth-2.0.1" - sources."call-bind-1.0.5" - sources."chalk-4.1.2" - sources."color-convert-2.0.1" - sources."color-name-1.1.4" - sources."corser-2.0.1" - sources."debug-3.2.7" - sources."define-data-property-1.1.1" - sources."eventemitter3-4.0.7" - sources."follow-redirects-1.15.3" - sources."function-bind-1.1.2" - sources."get-intrinsic-1.2.2" - sources."gopd-1.0.1" - sources."has-flag-4.0.0" - sources."has-property-descriptors-1.0.1" - sources."has-proto-1.0.1" - sources."has-symbols-1.0.3" - sources."hasown-2.0.0" - sources."he-1.2.0" - sources."html-encoding-sniffer-3.0.0" - sources."http-proxy-1.18.1" - sources."iconv-lite-0.6.3" - sources."lodash-4.17.21" - sources."mime-1.6.0" - sources."minimist-1.2.8" - sources."mkdirp-0.5.6" - sources."ms-2.1.3" - sources."object-inspect-1.13.1" - sources."opener-1.5.2" - sources."portfinder-1.0.32" - sources."qs-6.11.2" - sources."requires-port-1.0.0" - sources."safe-buffer-5.1.2" - sources."safer-buffer-2.1.2" - sources."secure-compare-3.0.1" - sources."set-function-length-1.1.1" - sources."side-channel-1.0.4" - sources."supports-color-7.2.0" - sources."union-0.5.0" - sources."url-join-4.0.1" - sources."whatwg-encoding-2.0.0" - ]; - buildInputs = globalBuildInputs; - meta = { - description = "A simple zero-configuration command-line http server"; - homepage = "https://github.com/http-party/http-server#readme"; - license = "MIT"; - }; - production = true; - bypassCache = true; - reconstructLock = true; - }; hs-airdrop = nodeEnv.buildNodePackage { name = "hs-airdrop"; packageName = "hs-airdrop"; @@ -79386,7 +80935,7 @@ in sources."jp-kernel-2.0.0" sources."nan-2.17.0" sources."nel-1.3.0" - sources."node-gyp-build-4.7.0" + sources."node-gyp-build-4.8.0" sources."uuid-3.4.0" sources."zeromq-5.3.1" ]; @@ -79652,7 +81201,7 @@ in sources."minimist-1.2.8" ]; }) - sources."moment-2.29.4" + sources."moment-2.30.1" sources."mv-2.1.1" sources."nan-2.18.0" sources."ncp-2.0.0" @@ -79693,8 +81242,8 @@ in }; dependencies = [ sources."@jcubic/lily-0.3.0" - sources."@types/jquery-3.5.28" - sources."@types/sizzle-2.3.7" + sources."@types/jquery-3.5.29" + sources."@types/sizzle-2.3.8" sources."ansidec-0.3.4" sources."arch-2.2.0" sources."clipboardy-2.3.0" @@ -79745,10 +81294,10 @@ in intelephense = nodeEnv.buildNodePackage { name = "intelephense"; packageName = "intelephense"; - version = "1.10.1"; + version = "1.10.2"; src = fetchurl { - url = "https://registry.npmjs.org/intelephense/-/intelephense-1.10.1.tgz"; - sha512 = "fzPdiPVsPfF+X3nMw/L4oI5d0pmXTkwTgCIo7O8HBideQ7/Vm/SMv+svLnh8++NpMT250QcGPwnc4rS5du9nLQ=="; + url = "https://registry.npmjs.org/intelephense/-/intelephense-1.10.2.tgz"; + sha512 = "bvN8aH5mHnuQH0yAr2ZFwQPtC6nE3MfxQvtzjCICxwAMvdngJyUPFvFR8aFKhwgRYMNzVmIMZSOlx+3DJWviUA=="; }; dependencies = [ sources."@azure/abort-controller-1.1.0" @@ -79773,11 +81322,11 @@ in sources."@nodelib/fs.walk-1.2.8" sources."@one-ini/wasm-0.1.1" sources."@opentelemetry/api-1.7.0" - sources."@opentelemetry/core-1.18.1" + sources."@opentelemetry/core-1.19.0" sources."@opentelemetry/instrumentation-0.41.2" - sources."@opentelemetry/resources-1.18.1" - sources."@opentelemetry/sdk-trace-base-1.18.1" - sources."@opentelemetry/semantic-conventions-1.18.1" + sources."@opentelemetry/resources-1.19.0" + sources."@opentelemetry/sdk-trace-base-1.19.0" + sources."@opentelemetry/semantic-conventions-1.19.0" sources."@protobufjs/aspromise-1.1.2" sources."@protobufjs/base64-1.1.2" sources."@protobufjs/codegen-2.0.4" @@ -79790,11 +81339,11 @@ in sources."@protobufjs/utf8-1.1.0" sources."@selderee/plugin-htmlparser2-0.11.0" sources."@tootallnate/once-2.0.0" - sources."@types/node-20.9.3" + sources."@types/node-20.10.7" sources."@types/shimmer-1.0.5" sources."@vscode/l10n-0.0.16" sources."abbrev-2.0.0" - sources."acorn-8.11.2" + sources."acorn-8.11.3" sources."acorn-import-assertions-1.9.0" sources."agent-base-6.0.2" sources."ajv-6.12.6" @@ -79863,7 +81412,7 @@ in sources."fast-deep-equal-3.1.3" sources."fast-glob-3.3.2" sources."fast-json-stable-stringify-2.1.0" - sources."fastq-1.15.0" + sources."fastq-1.16.0" sources."fill-range-7.0.1" sources."foreground-child-3.1.1" sources."forever-agent-0.6.1" @@ -80021,14 +81570,14 @@ in sources."turndown-7.1.2" sources."turndown-plugin-gfm-1.0.2" sources."tweetnacl-0.14.5" - sources."typescript-5.3.2" + sources."typescript-5.3.3" sources."undici-types-5.26.5" sources."universalify-2.0.1" sources."uri-js-4.4.1" sources."util-deprecate-1.0.2" sources."uuid-8.3.2" sources."verror-1.10.0" - sources."vscode-css-languageservice-6.2.10" + sources."vscode-css-languageservice-6.2.11" sources."vscode-html-languageservice-5.1.1" sources."vscode-jsonrpc-8.2.0" (sources."vscode-languageserver-8.2.0-next.3" // { @@ -80077,10 +81626,10 @@ in joplin = nodeEnv.buildNodePackage { name = "joplin"; packageName = "joplin"; - version = "2.13.1"; + version = "2.13.2"; src = fetchurl { - url = "https://registry.npmjs.org/joplin/-/joplin-2.13.1.tgz"; - sha512 = "BmVxMKSNYGe15lRSBr98zcXIvfI493Fqf86fpd17J9z1SEoyomWecoNlGB3J21y710EUo/R4Gt/51SvKX/NYbQ=="; + url = "https://registry.npmjs.org/joplin/-/joplin-2.13.2.tgz"; + sha512 = "xu3XOPUrA3MnmPfDdIkiLFPy/dZ2D2EtwA5jnYAKPkt9L9YP8ZpndQKRSIzIN03bTSS6RJ/h0JbqZWB9kxbxhQ=="; }; dependencies = [ (sources."@aws-crypto/crc32-3.0.0" // { @@ -80189,11 +81738,13 @@ in sources."@aws-sdk/service-error-classification-3.296.0" sources."@aws-sdk/shared-ini-file-loader-3.296.0" sources."@aws-sdk/signature-v4-3.296.0" - (sources."@aws-sdk/signature-v4-crt-3.451.0" // { + (sources."@aws-sdk/signature-v4-crt-3.485.0" // { dependencies = [ - sources."@aws-sdk/signature-v4-multi-region-3.451.0" - sources."@aws-sdk/types-3.451.0" - sources."@aws-sdk/util-user-agent-node-3.451.0" + sources."@aws-sdk/middleware-sdk-s3-3.485.0" + sources."@aws-sdk/signature-v4-multi-region-3.485.0" + sources."@aws-sdk/types-3.485.0" + sources."@aws-sdk/util-arn-parser-3.465.0" + sources."@aws-sdk/util-user-agent-node-3.485.0" ]; }) sources."@aws-sdk/signature-v4-multi-region-3.296.0" @@ -80213,7 +81764,7 @@ in sources."@aws-sdk/util-endpoints-3.296.0" sources."@aws-sdk/util-format-url-3.296.0" sources."@aws-sdk/util-hex-encoding-3.295.0" - sources."@aws-sdk/util-locate-window-3.310.0" + sources."@aws-sdk/util-locate-window-3.465.0" sources."@aws-sdk/util-middleware-3.296.0" sources."@aws-sdk/util-retry-3.296.0" sources."@aws-sdk/util-stream-browser-3.296.0" @@ -80225,7 +81776,7 @@ in sources."@aws-sdk/util-utf8-browser-3.259.0" sources."@aws-sdk/util-waiter-3.296.0" sources."@aws-sdk/xml-builder-3.295.0" - sources."@babel/runtime-7.23.4" + sources."@babel/runtime-7.23.7" sources."@braintree/sanitize-url-6.0.4" sources."@cronvel/get-pixels-3.4.1" sources."@gar/promisify-1.1.3" @@ -80238,15 +81789,15 @@ in sources."strip-ansi-7.1.0" ]; }) - sources."@joplin/fork-htmlparser2-4.1.49" - sources."@joplin/fork-sax-1.2.53" - sources."@joplin/fork-uslug-1.0.14" - sources."@joplin/htmlpack-2.13.3" - sources."@joplin/lib-2.13.3" - sources."@joplin/renderer-2.13.3" - sources."@joplin/turndown-4.0.71" - sources."@joplin/turndown-plugin-gfm-1.0.53" - (sources."@joplin/utils-2.13.3" // { + sources."@joplin/fork-htmlparser2-4.1.50" + sources."@joplin/fork-sax-1.2.54" + sources."@joplin/fork-uslug-1.0.15" + sources."@joplin/htmlpack-2.13.4" + sources."@joplin/lib-2.13.4" + sources."@joplin/renderer-2.13.4" + sources."@joplin/turndown-4.0.72" + sources."@joplin/turndown-plugin-gfm-1.0.54" + (sources."@joplin/utils-2.13.4" // { dependencies = [ sources."brace-expansion-2.0.1" sources."glob-10.3.10" @@ -80256,18 +81807,30 @@ in sources."@mapbox/node-pre-gyp-1.0.11" sources."@npmcli/fs-1.1.1" sources."@npmcli/move-file-1.1.2" - sources."@smithy/eventstream-codec-2.0.13" + sources."@smithy/abort-controller-2.0.16" + sources."@smithy/eventstream-codec-2.0.16" + sources."@smithy/fetch-http-handler-2.3.2" sources."@smithy/is-array-buffer-2.0.0" - sources."@smithy/node-config-provider-2.1.5" - sources."@smithy/property-provider-2.0.14" - sources."@smithy/protocol-http-3.0.9" - sources."@smithy/querystring-parser-2.0.13" - sources."@smithy/shared-ini-file-loader-2.2.4" - sources."@smithy/signature-v4-2.0.15" - sources."@smithy/types-2.5.0" + sources."@smithy/middleware-endpoint-2.3.0" + sources."@smithy/middleware-serde-2.0.16" + sources."@smithy/middleware-stack-2.0.10" + sources."@smithy/node-config-provider-2.1.9" + sources."@smithy/node-http-handler-2.2.2" + sources."@smithy/property-provider-2.0.17" + sources."@smithy/protocol-http-3.0.12" + sources."@smithy/querystring-builder-2.0.16" + sources."@smithy/querystring-parser-2.0.16" + sources."@smithy/shared-ini-file-loader-2.2.8" + sources."@smithy/signature-v4-2.0.19" + sources."@smithy/smithy-client-2.2.1" + sources."@smithy/types-2.8.0" + sources."@smithy/url-parser-2.0.16" + sources."@smithy/util-base64-2.0.1" sources."@smithy/util-buffer-from-2.0.0" + sources."@smithy/util-config-provider-2.1.0" sources."@smithy/util-hex-encoding-2.0.0" - sources."@smithy/util-middleware-2.0.6" + sources."@smithy/util-middleware-2.0.9" + sources."@smithy/util-stream-2.0.24" sources."@smithy/util-uri-escape-2.0.0" sources."@smithy/util-utf8-2.0.2" sources."@tootallnate/once-2.0.0" @@ -80278,7 +81841,7 @@ in sources."@types/mdast-3.0.15" sources."@types/ms-0.7.34" sources."@types/nanoid-3.0.0" - sources."@types/node-20.9.3" + sources."@types/node-20.10.7" sources."@types/unist-2.0.10" sources."@types/ws-8.5.10" sources."abab-2.0.6" @@ -80310,7 +81873,7 @@ in sources."asynckit-0.4.0" sources."atob-2.1.2" sources."available-typed-arrays-1.0.5" - sources."aws-crt-1.19.0" + sources."aws-crt-1.20.1" (sources."aws-sdk-2.1340.0" // { dependencies = [ sources."buffer-4.9.2" @@ -80323,7 +81886,11 @@ in }) sources."aws-sign2-0.7.0" sources."aws4-1.12.0" - sources."axios-1.6.2" + (sources."axios-1.6.5" // { + dependencies = [ + sources."follow-redirects-1.15.4" + ]; + }) sources."b4a-1.6.4" sources."balanced-match-1.0.2" sources."base-64-1.0.0" @@ -80400,7 +81967,7 @@ in sources."css-3.0.0" sources."cssstyle-3.0.0" sources."cwise-compiler-1.1.3" - sources."cytoscape-3.27.0" + sources."cytoscape-3.28.1" sources."cytoscape-cose-bilkent-4.1.0" (sources."cytoscape-fcose-2.2.0" // { dependencies = [ @@ -80482,7 +82049,7 @@ in sources."domelementtype-2.3.0" sources."domexception-4.0.0" sources."domhandler-5.0.3" - sources."dompurify-3.0.6" + sources."dompurify-3.0.8" sources."domutils-3.1.0" sources."duplexify-3.7.1" sources."eastasianwidth-0.2.0" @@ -80801,7 +82368,7 @@ in sources."mkdirp-1.0.4" sources."mkdirp-classic-0.5.3" sources."moment-2.29.4" - (sources."mqtt-4.3.7" // { + (sources."mqtt-4.3.8" // { dependencies = [ sources."duplexify-4.1.2" sources."readable-stream-3.6.2" @@ -80822,7 +82389,7 @@ in sources."negotiator-0.6.3" sources."nextgen-events-1.5.3" sources."no-case-2.3.2" - sources."node-abi-3.51.0" + sources."node-abi-3.54.0" sources."node-addon-api-4.3.0" sources."node-bitmap-0.0.1" sources."node-emoji-1.11.0" @@ -80841,7 +82408,7 @@ in sources."readable-stream-3.6.2" ]; }) - sources."node-gyp-build-4.7.0" + sources."node-gyp-build-4.8.0" (sources."node-notifier-10.0.1" // { dependencies = [ sources."uuid-8.3.2" @@ -80883,7 +82450,7 @@ in sources."path-key-3.1.1" (sources."path-scurry-1.10.1" // { dependencies = [ - sources."lru-cache-10.0.3" + sources."lru-cache-10.1.0" ]; }) sources."performance-now-2.1.0" @@ -80926,7 +82493,7 @@ in sources."readdirp-3.6.0" sources."reduce-flatten-1.0.1" sources."redux-4.2.1" - sources."regenerator-runtime-0.14.0" + sources."regenerator-runtime-0.14.1" sources."reinterval-1.1.0" sources."relateurl-0.2.7" sources."relative-3.0.2" @@ -81004,7 +82571,7 @@ in }) sources."statuses-1.5.0" sources."stream-shift-1.0.1" - sources."streamx-2.15.5" + sources."streamx-2.15.6" sources."strict-uri-encode-2.0.0" sources."string-kit-0.17.10" sources."string-padding-1.0.2" @@ -81038,7 +82605,7 @@ in sources."strip-final-newline-2.0.0" sources."strip-json-comments-2.0.1" sources."strnum-1.0.5" - sources."stylis-4.3.0" + sources."stylis-4.3.1" sources."supports-color-7.2.0" sources."symbol-tree-3.2.4" sources."table-layout-0.4.5" @@ -81117,7 +82684,7 @@ in ]; }) sources."w3c-xmlserializer-4.0.0" - sources."web-worker-1.2.0" + sources."web-worker-1.3.0" sources."webidl-conversions-7.0.0" sources."whatwg-encoding-2.0.0" sources."whatwg-mimetype-3.0.0" @@ -81143,7 +82710,7 @@ in ]; }) sources."wrappy-1.0.2" - sources."ws-8.14.2" + sources."ws-8.16.0" sources."xml-name-validator-4.0.0" sources."xml2js-0.4.23" sources."xmlbuilder-11.0.1" @@ -81199,7 +82766,7 @@ in sources."path-key-3.1.1" (sources."path-scurry-1.10.1" // { dependencies = [ - sources."lru-cache-10.0.3" + sources."lru-cache-10.1.0" ]; }) sources."proto-list-1.2.4" @@ -81272,8 +82839,8 @@ in sha512 = "e8cIg2z62InH7azBBi3EsSEqrKx+nUtAS5bBcYTSpZFA+vhNPyhv8PTFZ0WsjOPDj04/dOLlm08EDcQJDqaGQg=="; }; dependencies = [ - sources."@babel/parser-7.23.4" - sources."@jsdoc/salty-0.2.6" + sources."@babel/parser-7.23.6" + sources."@jsdoc/salty-0.2.7" sources."@types/linkify-it-3.0.5" sources."@types/markdown-it-12.2.3" sources."@types/mdurl-1.0.5" @@ -81482,154 +83049,72 @@ in json-server = nodeEnv.buildNodePackage { name = "json-server"; packageName = "json-server"; - version = "0.17.4"; + version = "1.0.0-alpha.12"; src = fetchurl { - url = "https://registry.npmjs.org/json-server/-/json-server-0.17.4.tgz"; - sha512 = "bGBb0WtFuAKbgI7JV3A864irWnMZSvBYRJbohaOuatHwKSRFUfqtQlrYMrB6WbalXy/cJabyjlb7JkHli6dYjQ=="; + url = "https://registry.npmjs.org/json-server/-/json-server-1.0.0-alpha.12.tgz"; + sha512 = "4Q2ULHOCUpmKEy9EtadkxjdNmhSxfvnSf/I9RUJYddfDyiheF7gmkYM8m8oKFW7sJdYzbgeKg7QdJO6myrgbLQ=="; }; dependencies = [ - sources."accepts-1.3.8" - sources."ansi-regex-5.0.1" - sources."ansi-styles-4.3.0" - sources."array-flatten-1.1.1" - sources."basic-auth-2.0.1" - sources."body-parser-1.20.2" - sources."bytes-3.1.2" - sources."call-bind-1.0.5" - sources."chalk-4.1.2" - sources."cliui-8.0.1" - sources."color-convert-2.0.1" - sources."color-name-1.1.4" - sources."compressible-2.0.18" - (sources."compression-1.7.4" // { - dependencies = [ - sources."bytes-3.0.0" - ]; - }) - sources."connect-pause-0.1.1" - (sources."content-disposition-0.5.4" // { - dependencies = [ - sources."safe-buffer-5.2.1" - ]; - }) - sources."content-type-1.0.5" - sources."cookie-0.5.0" - sources."cookie-signature-1.0.6" - sources."cors-2.8.5" - sources."debug-2.6.9" - sources."define-data-property-1.1.1" - sources."depd-2.0.0" - sources."destroy-1.2.0" - sources."ee-first-1.1.1" - sources."emoji-regex-8.0.0" - sources."encodeurl-1.0.2" - sources."errorhandler-1.5.1" - sources."escalade-3.1.1" - sources."escape-html-1.0.3" - sources."etag-1.8.1" - (sources."express-4.18.2" // { - dependencies = [ - sources."body-parser-1.20.1" - sources."raw-body-2.5.1" - sources."safe-buffer-5.2.1" - ]; - }) - (sources."express-urlrewrite-1.4.0" // { - dependencies = [ - sources."path-to-regexp-1.8.0" - ]; - }) - sources."finalhandler-1.2.0" - sources."forwarded-0.2.0" - sources."fresh-0.5.2" - sources."function-bind-1.1.2" - sources."get-caller-file-2.0.5" - sources."get-intrinsic-1.2.2" - sources."gopd-1.0.1" - sources."graceful-fs-4.2.11" - sources."has-flag-4.0.0" - sources."has-property-descriptors-1.0.1" - sources."has-proto-1.0.1" - sources."has-symbols-1.0.3" - sources."hasown-2.0.0" - sources."http-errors-2.0.0" - sources."iconv-lite-0.4.24" - sources."inherits-2.0.4" - sources."ipaddr.js-1.9.1" - sources."is-fullwidth-code-point-3.0.0" - sources."is-promise-2.2.2" - sources."isarray-0.0.1" - sources."jju-1.4.0" - sources."json-parse-helpfulerror-1.0.3" - sources."lodash-4.17.21" - sources."lodash-id-0.14.1" - sources."lowdb-1.0.0" - sources."media-typer-0.3.0" - sources."merge-descriptors-1.0.1" - (sources."method-override-3.0.0" // { - dependencies = [ - sources."debug-3.1.0" - ]; - }) - sources."methods-1.1.2" - sources."mime-1.6.0" - sources."mime-db-1.52.0" - sources."mime-types-2.1.35" - (sources."morgan-1.10.0" // { - dependencies = [ - sources."on-finished-2.3.0" - ]; - }) - sources."ms-2.0.0" - sources."nanoid-3.3.7" + sources."@polka/url-1.0.0-next.24" + sources."@tinyhttp/accepts-2.2.1" + sources."@tinyhttp/app-2.2.3" + sources."@tinyhttp/content-disposition-2.2.0" + sources."@tinyhttp/content-type-0.1.4" + sources."@tinyhttp/cookie-2.1.0" + sources."@tinyhttp/cookie-signature-2.1.0" + sources."@tinyhttp/cors-2.0.0" + sources."@tinyhttp/encode-url-2.1.1" + sources."@tinyhttp/etag-2.1.1" + sources."@tinyhttp/forwarded-2.1.2" + sources."@tinyhttp/proxy-addr-2.1.3" + sources."@tinyhttp/req-2.2.2" + sources."@tinyhttp/res-2.2.2" + sources."@tinyhttp/router-2.2.2" + sources."@tinyhttp/send-2.2.1" + sources."@tinyhttp/type-is-2.2.2" + sources."@tinyhttp/url-2.1.1" + sources."@tinyhttp/vary-0.1.3" + sources."anymatch-3.1.3" + sources."binary-extensions-2.2.0" + sources."braces-3.0.2" + sources."chalk-5.3.0" + sources."chokidar-3.5.3" + sources."dot-prop-8.0.2" + sources."es-escape-html-0.1.1" + sources."es-vary-0.1.2" + sources."eta-3.2.0" + sources."fill-range-7.0.1" + sources."fsevents-2.3.3" + sources."glob-parent-5.1.2" + sources."header-range-parser-1.1.3" + sources."inflection-3.0.0" + sources."ipaddr.js-2.1.0" + sources."is-binary-path-2.1.0" + sources."is-extglob-2.1.1" + sources."is-glob-4.0.3" + sources."is-number-7.0.0" + sources."json5-2.2.3" + sources."lowdb-7.0.1" + sources."milliparsec-2.3.0" + sources."mime-4.0.1" + sources."mrmime-2.0.0" sources."negotiator-0.6.3" - sources."object-assign-4.1.1" - sources."object-inspect-1.13.1" - sources."on-finished-2.4.1" - sources."on-headers-1.0.2" - sources."parseurl-1.3.3" - sources."path-to-regexp-0.1.7" - sources."pify-3.0.0" - sources."please-upgrade-node-3.2.0" - sources."pluralize-8.0.0" - sources."proxy-addr-2.0.7" - sources."qs-6.11.0" - sources."range-parser-1.2.1" - sources."raw-body-2.5.2" - sources."require-directory-2.1.1" - sources."safe-buffer-5.1.2" - sources."safer-buffer-2.1.2" - sources."semver-compare-1.0.0" - (sources."send-0.18.0" // { - dependencies = [ - sources."ms-2.1.3" - ]; - }) - sources."serve-static-1.15.0" - sources."server-destroy-1.0.1" - sources."set-function-length-1.1.1" - sources."setprototypeof-1.2.0" - sources."side-channel-1.0.4" - sources."statuses-2.0.1" - sources."steno-0.4.4" - sources."string-width-4.2.3" - sources."strip-ansi-6.0.1" - sources."supports-color-7.2.0" - sources."toidentifier-1.0.1" - sources."type-is-1.6.18" - sources."unpipe-1.0.0" - sources."utils-merge-1.0.1" - sources."vary-1.1.2" - sources."wrap-ansi-7.0.0" - sources."y18n-5.0.8" - sources."yargs-17.7.2" - sources."yargs-parser-21.1.1" + sources."normalize-path-3.0.0" + sources."picomatch-2.3.1" + sources."readdirp-3.6.0" + sources."regexparam-2.0.2" + sources."sirv-2.0.4" + sources."sort-on-6.0.0" + sources."steno-4.0.2" + sources."to-regex-range-5.0.1" + sources."totalist-3.0.1" + sources."type-fest-3.13.1" + sources."zod-3.22.4" ]; buildInputs = globalBuildInputs; meta = { - description = "Get a full fake REST API with zero coding in less than 30 seconds"; - homepage = "https://github.com/typicode/json-server"; - license = "MIT"; + description = "> [!IMPORTANT] > Viewing alpha v1 documentation – usable but expect breaking changes. For stable version, see [here](https://github.com/typicode/json-server/tree/v0)"; + license = "SEE LICENSE IN ./LICENSE"; }; production = true; bypassCache = true; @@ -82218,7 +83703,7 @@ in ]; }) sources."@oclif/screen-1.0.4" - (sources."@putdotio/api-client-8.40.0" // { + (sources."@putdotio/api-client-8.42.0" // { dependencies = [ sources."axios-0.21.4" ]; @@ -82284,7 +83769,7 @@ in sources."fast-deep-equal-3.1.3" sources."fast-glob-3.3.2" sources."fast-json-stable-stringify-2.1.0" - sources."fastq-1.15.0" + sources."fastq-1.16.0" (sources."figures-3.2.0" // { dependencies = [ sources."escape-string-regexp-1.0.5" @@ -82292,7 +83777,7 @@ in }) sources."fill-range-7.0.1" sources."find-up-3.0.0" - sources."follow-redirects-1.15.3" + sources."follow-redirects-1.15.4" sources."fs-extra-8.1.0" sources."function-bind-1.1.2" sources."get-intrinsic-1.2.2" @@ -82336,7 +83821,7 @@ in sources."merge2-1.4.1" sources."micromatch-4.0.5" sources."mimic-fn-2.1.0" - sources."moment-2.29.4" + sources."moment-2.30.1" sources."ms-2.1.2" sources."mute-stream-0.0.8" sources."natural-orderby-2.0.3" @@ -82439,16 +83924,16 @@ in dependencies = [ sources."@ampproject/remapping-2.2.1" sources."@babel/cli-7.23.4" - sources."@babel/code-frame-7.23.4" - sources."@babel/compat-data-7.23.3" - (sources."@babel/core-7.23.3" // { + sources."@babel/code-frame-7.23.5" + sources."@babel/compat-data-7.23.5" + (sources."@babel/core-7.23.7" // { dependencies = [ sources."semver-6.3.1" ]; }) - sources."@babel/generator-7.23.4" + sources."@babel/generator-7.23.6" sources."@babel/helper-annotate-as-pure-7.22.5" - (sources."@babel/helper-compilation-targets-7.22.15" // { + (sources."@babel/helper-compilation-targets-7.23.6" // { dependencies = [ sources."semver-6.3.1" ]; @@ -82463,17 +83948,17 @@ in sources."@babel/helper-split-export-declaration-7.22.6" sources."@babel/helper-string-parser-7.23.4" sources."@babel/helper-validator-identifier-7.22.20" - sources."@babel/helper-validator-option-7.22.15" - sources."@babel/helpers-7.23.4" + sources."@babel/helper-validator-option-7.23.5" + sources."@babel/helpers-7.23.7" sources."@babel/highlight-7.23.4" sources."@babel/node-7.22.19" - sources."@babel/parser-7.23.4" + sources."@babel/parser-7.23.6" sources."@babel/plugin-syntax-jsx-7.23.3" sources."@babel/plugin-transform-react-jsx-7.23.4" - sources."@babel/register-7.22.15" + sources."@babel/register-7.23.7" sources."@babel/template-7.22.15" - sources."@babel/traverse-7.23.4" - sources."@babel/types-7.23.4" + sources."@babel/traverse-7.23.7" + sources."@babel/types-7.23.6" sources."@jridgewell/gen-mapping-0.3.3" sources."@jridgewell/resolve-uri-3.1.1" sources."@jridgewell/set-array-1.1.2" @@ -82530,7 +84015,7 @@ in sources."abab-2.0.6" sources."abbrev-1.1.1" sources."accepts-1.3.8" - sources."acorn-8.11.2" + sources."acorn-8.11.3" (sources."acorn-globals-6.0.0" // { dependencies = [ sources."acorn-7.4.1" @@ -82573,13 +84058,13 @@ in sources."braces-3.0.2" sources."browser-or-node-1.3.0" sources."browser-process-hrtime-1.0.0" - sources."browserslist-4.22.1" + sources."browserslist-4.22.2" sources."buffer-5.7.1" sources."buffer-from-1.1.2" sources."bufferutil-4.0.8" sources."bytes-3.1.2" sources."call-bind-1.0.5" - sources."caniuse-lite-1.0.30001563" + sources."caniuse-lite-1.0.30001576" sources."canvas-2.11.2" sources."chalk-2.4.2" sources."chardet-1.6.1" @@ -82600,7 +84085,7 @@ in sources."convert-source-map-2.0.0" sources."cookie-0.5.0" sources."cookie-signature-1.0.6" - sources."core-js-3.33.3" + sources."core-js-3.35.0" sources."core-util-is-1.0.3" sources."cors-2.8.5" sources."create-hash-1.2.0" @@ -82639,7 +84124,7 @@ in }) sources."dotenv-8.6.0" sources."ee-first-1.1.1" - sources."electron-to-chromium-1.4.589" + sources."electron-to-chromium-1.4.623" sources."emoji-regex-8.0.0" sources."encodeurl-1.0.2" sources."encoding-0.1.13" @@ -82667,7 +84152,7 @@ in }) sources."express-validator-6.15.0" sources."fast-glob-3.3.2" - sources."fastq-1.15.0" + sources."fastq-1.16.0" sources."fill-range-7.0.1" sources."filter-obj-1.1.0" (sources."finalhandler-1.2.0" // { @@ -82678,7 +84163,7 @@ in }) sources."find-cache-dir-2.1.0" sources."find-up-3.0.0" - sources."follow-redirects-1.15.3" + sources."follow-redirects-1.15.4" sources."for-each-0.3.3" sources."form-data-3.0.1" sources."forwarded-0.2.0" @@ -82830,7 +84315,7 @@ in sources."nan-2.18.0" sources."napi-build-utils-1.0.2" sources."negotiator-0.6.3" - (sources."node-abi-3.51.0" // { + (sources."node-abi-3.54.0" // { dependencies = [ sources."lru-cache-6.0.0" sources."semver-7.5.4" @@ -82839,7 +84324,7 @@ in }) sources."node-environment-flags-1.0.6" sources."node-fetch-2.7.0" - sources."node-gyp-build-4.7.0" + sources."node-gyp-build-4.8.0" (sources."node-notifier-10.0.1" // { dependencies = [ sources."lru-cache-6.0.0" @@ -82847,14 +84332,14 @@ in sources."yallist-4.0.0" ]; }) - sources."node-releases-2.0.13" + sources."node-releases-2.0.14" sources."nopt-5.0.0" sources."npmlog-5.0.1" sources."nwsapi-2.2.7" sources."object-assign-4.1.1" sources."object-inspect-1.13.1" sources."object-keys-1.1.1" - sources."object.assign-4.1.4" + sources."object.assign-4.1.5" sources."object.getownpropertydescriptors-2.1.7" sources."on-finished-2.4.1" sources."once-1.4.0" @@ -82930,7 +84415,7 @@ in }) sources."rc-1.2.8" sources."readable-stream-3.6.2" - sources."regenerator-runtime-0.14.0" + sources."regenerator-runtime-0.14.1" sources."regexp.prototype.flags-1.5.1" sources."require-directory-2.1.1" sources."requires-port-1.0.0" @@ -83058,7 +84543,7 @@ in ]; }) sources."wrappy-1.0.2" - sources."ws-8.14.2" + sources."ws-8.16.0" sources."xml-name-validator-3.0.0" sources."xmlchars-2.2.0" sources."y18n-5.0.8" @@ -83097,7 +84582,7 @@ in sources."emoji-regex-8.0.0" sources."escalade-3.1.1" sources."fast-glob-3.3.2" - sources."fastq-1.15.0" + sources."fastq-1.16.0" sources."fill-range-7.0.1" sources."get-caller-file-2.0.5" sources."glob-parent-5.1.2" @@ -83133,13 +84618,13 @@ in lerna = nodeEnv.buildNodePackage { name = "lerna"; packageName = "lerna"; - version = "7.4.2"; + version = "8.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/lerna/-/lerna-7.4.2.tgz"; - sha512 = "gxavfzHfJ4JL30OvMunmlm4Anw7d7Tq6tdVHzUukLdS9nWnxCN/QB21qR+VJYp5tcyXogHKbdUEGh6qmeyzxSA=="; + url = "https://registry.npmjs.org/lerna/-/lerna-8.0.2.tgz"; + sha512 = "nnOIGI5V5Af9gfraNcMVoV1Fry/y7/h3nCQYk0/CMzBYDD+xbNL3DH8+c82AJkNR5ABslmpXjW4DLJ11/1b3CQ=="; }; dependencies = [ - (sources."@babel/code-frame-7.23.4" // { + (sources."@babel/code-frame-7.23.5" // { dependencies = [ sources."ansi-styles-3.2.1" sources."chalk-2.4.2" @@ -83160,42 +84645,27 @@ in sources."supports-color-5.5.0" ]; }) - sources."@gar/promisify-1.1.3" sources."@hutson/parse-repository-url-3.0.2" - (sources."@isaacs/cliui-8.0.2" // { - dependencies = [ - sources."ansi-regex-6.0.1" - sources."ansi-styles-6.2.1" - sources."emoji-regex-9.2.2" - sources."string-width-5.1.2" - sources."strip-ansi-7.1.0" - sources."wrap-ansi-8.1.0" - ]; - }) + sources."@isaacs/cliui-8.0.2" sources."@jest/schemas-29.6.3" - sources."@lerna/child-process-7.4.2" - sources."@lerna/create-7.4.2" + sources."@lerna/create-8.0.2" sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" - sources."@npmcli/fs-2.1.2" - sources."@npmcli/git-4.1.0" + sources."@npmcli/agent-2.2.0" + sources."@npmcli/fs-3.1.0" + sources."@npmcli/git-5.0.4" (sources."@npmcli/installed-package-contents-2.0.2" // { dependencies = [ sources."npm-bundled-3.0.0" ]; }) - (sources."@npmcli/move-file-2.0.1" // { - dependencies = [ - sources."rimraf-3.0.2" - ]; - }) sources."@npmcli/node-gyp-3.0.0" - sources."@npmcli/promise-spawn-6.0.2" - sources."@npmcli/run-script-6.0.2" - sources."@nrwl/devkit-16.10.0" - sources."@nrwl/tao-16.10.0" - (sources."@nx/devkit-16.10.0" // { + sources."@npmcli/promise-spawn-7.0.1" + sources."@npmcli/run-script-7.0.2" + sources."@nrwl/devkit-17.2.8" + sources."@nrwl/tao-17.2.8" + (sources."@nx/devkit-17.2.8" // { dependencies = [ sources."lru-cache-6.0.0" sources."semver-7.5.3" @@ -83219,39 +84689,32 @@ in sources."@octokit/rest-19.0.11" sources."@octokit/tsconfig-1.0.2" sources."@octokit/types-9.3.2" - sources."@parcel/watcher-2.0.4" sources."@sigstore/bundle-1.1.0" sources."@sigstore/protobuf-specs-0.2.1" (sources."@sigstore/sign-1.0.0" // { dependencies = [ - sources."@npmcli/fs-3.1.0" - sources."brace-expansion-2.0.1" + sources."agent-base-6.0.2" (sources."cacache-17.1.4" // { dependencies = [ sources."minipass-7.0.4" ]; }) - (sources."fs-minipass-3.0.3" // { - dependencies = [ - sources."minipass-7.0.4" - ]; - }) - sources."glob-10.3.10" + sources."http-proxy-agent-5.0.0" + sources."https-proxy-agent-5.0.1" + sources."lru-cache-7.18.3" sources."make-fetch-happen-11.1.1" - sources."minimatch-9.0.3" sources."minipass-5.0.0" - (sources."minipass-fetch-3.0.4" // { + (sources."minipass-collect-1.0.2" // { dependencies = [ - sources."minipass-7.0.4" + sources."minipass-3.3.6" ]; }) + sources."socks-proxy-agent-7.0.0" (sources."ssri-10.0.5" // { dependencies = [ sources."minipass-7.0.4" ]; }) - sources."unique-filename-3.0.0" - sources."unique-slug-4.0.0" ]; }) sources."@sigstore/tuf-1.0.3" @@ -83259,7 +84722,7 @@ in sources."@swc-node/core-1.10.6" sources."@swc-node/register-1.6.8" sources."@swc-node/sourcemap-support-0.3.0" - sources."@swc/core-1.3.99" + sources."@swc/core-1.3.102" sources."@swc/counter-0.1.2" sources."@swc/helpers-0.5.3" sources."@swc/types-0.1.5" @@ -83267,7 +84730,6 @@ in sources."@tufjs/canonical-json-1.0.0" (sources."@tufjs/models-1.0.4" // { dependencies = [ - sources."brace-expansion-2.0.1" sources."minimatch-9.0.3" ]; }) @@ -83283,9 +84745,9 @@ in }) sources."@zkochan/js-yaml-0.0.6" sources."JSONStream-1.3.5" - sources."abbrev-1.1.1" + sources."abbrev-2.0.0" sources."add-stream-1.0.0" - sources."agent-base-6.0.2" + sources."agent-base-7.1.0" sources."agentkeepalive-4.5.0" sources."aggregate-error-3.1.0" sources."ansi-colors-4.1.3" @@ -83295,7 +84757,7 @@ in ]; }) sources."ansi-regex-5.0.1" - sources."ansi-styles-4.3.0" + sources."ansi-styles-6.2.1" sources."aproba-2.0.0" sources."are-we-there-yet-3.0.1" sources."argparse-2.0.1" @@ -83305,44 +84767,43 @@ in sources."arrify-1.0.1" sources."async-3.2.5" sources."asynckit-0.4.0" - sources."axios-1.6.2" + sources."axios-1.6.5" sources."balanced-match-1.0.2" sources."base64-js-1.5.1" sources."before-after-hook-2.2.3" sources."bl-4.1.0" - sources."brace-expansion-1.1.11" + sources."brace-expansion-2.0.1" sources."braces-3.0.2" sources."buffer-5.7.1" sources."buffer-from-1.1.2" sources."builtins-1.0.3" sources."byte-size-8.1.1" - (sources."cacache-16.1.3" // { + (sources."cacache-18.0.2" // { dependencies = [ - sources."brace-expansion-2.0.1" - sources."glob-8.1.0" - sources."minimatch-5.1.6" - (sources."rimraf-3.0.2" // { - dependencies = [ - sources."brace-expansion-1.1.11" - sources."glob-7.2.3" - sources."minimatch-3.1.2" - ]; - }) + sources."ssri-10.0.5" ]; }) sources."callsites-3.1.0" sources."camelcase-5.3.1" sources."camelcase-keys-6.2.2" - sources."chalk-4.1.0" + (sources."chalk-4.1.0" // { + dependencies = [ + sources."ansi-styles-4.3.0" + ]; + }) sources."chardet-0.7.0" sources."chownr-2.0.0" sources."ci-info-3.9.0" sources."clean-stack-2.2.0" sources."cli-cursor-3.1.0" - sources."cli-spinners-2.9.1" + sources."cli-spinners-2.9.2" sources."cli-width-3.0.0" - (sources."cliui-8.0.1" // { + (sources."cliui-7.0.4" // { dependencies = [ + sources."ansi-styles-4.3.0" + sources."emoji-regex-8.0.0" + sources."string-width-4.2.3" + sources."strip-ansi-6.0.1" sources."wrap-ansi-7.0.0" ]; }) @@ -83357,7 +84818,11 @@ in sources."color-name-1.1.4" sources."color-support-1.1.3" sources."colorette-2.0.20" - sources."columnify-1.6.0" + (sources."columnify-1.6.0" // { + dependencies = [ + sources."strip-ansi-6.0.1" + ]; + }) sources."combined-stream-1.0.8" sources."compare-func-2.0.0" sources."concat-map-0.0.1" @@ -83383,11 +84848,7 @@ in }) sources."dargs-7.0.0" sources."dateformat-3.0.3" - (sources."debug-4.3.4" // { - dependencies = [ - sources."ms-2.1.2" - ]; - }) + sources."debug-4.3.4" sources."decamelize-1.2.0" (sources."decamelize-keys-1.1.1" // { dependencies = [ @@ -83413,8 +84874,12 @@ in sources."duplexer-0.1.2" sources."eastasianwidth-0.2.0" sources."ejs-3.1.9" - sources."emoji-regex-8.0.0" - sources."encoding-0.1.13" + sources."emoji-regex-9.2.2" + (sources."encoding-0.1.13" // { + dependencies = [ + sources."iconv-lite-0.6.3" + ]; + }) sources."end-of-stream-1.4.4" sources."enquirer-2.3.6" sources."env-paths-2.2.1" @@ -83429,23 +84894,21 @@ in sources."exponential-backoff-3.1.1" (sources."external-editor-3.1.0" // { dependencies = [ - sources."iconv-lite-0.4.24" sources."tmp-0.0.33" ]; }) sources."fast-glob-3.3.2" - sources."fastq-1.15.0" + sources."fastq-1.16.0" sources."figures-3.2.0" (sources."filelist-1.0.4" // { dependencies = [ - sources."brace-expansion-2.0.1" sources."minimatch-5.1.6" ]; }) sources."fill-range-7.0.1" sources."find-up-4.1.0" sources."flat-5.0.2" - sources."follow-redirects-1.15.3" + sources."follow-redirects-1.15.4" (sources."foreground-child-3.1.1" // { dependencies = [ sources."signal-exit-4.1.0" @@ -83453,16 +84916,27 @@ in }) sources."form-data-4.0.0" sources."fs-constants-1.0.0" - sources."fs-extra-11.1.1" - sources."fs-minipass-2.1.0" + sources."fs-extra-11.2.0" + sources."fs-minipass-3.0.3" sources."fs.realpath-1.0.0" sources."function-bind-1.1.2" - sources."gauge-4.0.4" + (sources."gauge-4.0.4" // { + dependencies = [ + sources."emoji-regex-8.0.0" + sources."string-width-4.2.3" + sources."strip-ansi-6.0.1" + ]; + }) sources."get-caller-file-2.0.5" (sources."get-pkg-repo-4.2.1" // { dependencies = [ + sources."emoji-regex-8.0.0" sources."hosted-git-info-4.1.0" sources."lru-cache-6.0.0" + sources."string-width-4.2.3" + sources."strip-ansi-6.0.1" + sources."yargs-16.2.0" + sources."yargs-parser-20.2.9" ]; }) sources."get-port-5.1.1" @@ -83477,9 +84951,9 @@ in sources."git-up-7.0.0" sources."git-url-parse-13.1.0" sources."gitconfiglocal-1.0.0" - (sources."glob-7.2.3" // { + (sources."glob-10.3.10" // { dependencies = [ - sources."minimatch-3.1.2" + sources."minimatch-9.0.3" ]; }) sources."glob-parent-5.1.2" @@ -83492,16 +84966,15 @@ in sources."hasown-2.0.0" sources."hosted-git-info-2.8.9" sources."http-cache-semantics-4.1.1" - sources."http-proxy-agent-5.0.0" - sources."https-proxy-agent-5.0.1" + sources."http-proxy-agent-7.0.0" + sources."https-proxy-agent-7.0.2" sources."human-signals-2.1.0" sources."humanize-ms-1.2.1" - sources."iconv-lite-0.6.3" + sources."iconv-lite-0.4.24" sources."ieee754-1.2.1" sources."ignore-5.3.0" (sources."ignore-walk-5.0.1" // { dependencies = [ - sources."brace-expansion-2.0.1" sources."minimatch-5.1.6" ]; }) @@ -83513,20 +84986,25 @@ in sources."import-local-3.1.0" sources."imurmurhash-0.1.4" sources."indent-string-4.0.0" - sources."infer-owner-1.0.4" sources."inflight-1.0.6" sources."inherits-2.0.4" sources."ini-1.3.8" (sources."init-package-json-5.0.0" // { dependencies = [ sources."hosted-git-info-6.1.1" + sources."lru-cache-7.18.3" sources."npm-package-arg-10.1.0" ]; }) (sources."inquirer-8.2.6" // { dependencies = [ + sources."ansi-styles-4.3.0" sources."chalk-4.1.2" + sources."emoji-regex-8.0.0" sources."mute-stream-0.0.8" + sources."string-width-4.2.3" + sources."strip-ansi-6.0.1" + sources."wrap-ansi-6.2.0" ]; }) sources."ip-2.0.0" @@ -83554,6 +85032,7 @@ in sources."jackspeak-2.3.6" (sources."jake-10.8.7" // { dependencies = [ + sources."brace-expansion-1.1.11" sources."minimatch-3.1.2" ]; }) @@ -83562,7 +85041,7 @@ in sources."js-tokens-4.0.0" sources."js-yaml-4.1.0" sources."json-parse-better-errors-1.0.2" - sources."json-parse-even-better-errors-3.0.0" + sources."json-parse-even-better-errors-3.0.1" sources."json-stringify-safe-5.0.1" sources."json5-2.2.3" sources."jsonc-parser-3.2.0" @@ -83572,13 +85051,14 @@ in (sources."libnpmaccess-7.0.2" // { dependencies = [ sources."hosted-git-info-6.1.1" + sources."lru-cache-7.18.3" sources."npm-package-arg-10.1.0" ]; }) (sources."libnpmpublish-7.3.0" // { dependencies = [ sources."hosted-git-info-6.1.1" - sources."minipass-7.0.4" + sources."lru-cache-7.18.3" sources."normalize-package-data-5.0.0" sources."npm-package-arg-10.1.0" sources."ssri-10.0.5" @@ -83595,9 +85075,13 @@ in sources."lodash-4.17.21" sources."lodash.ismatch-4.4.0" sources."log-symbols-4.1.0" - sources."lru-cache-7.18.3" + sources."lru-cache-10.1.0" sources."make-dir-4.0.0" - sources."make-fetch-happen-10.2.1" + (sources."make-fetch-happen-13.0.0" // { + dependencies = [ + sources."ssri-10.0.5" + ]; + }) sources."map-obj-4.3.0" (sources."meow-8.1.2" // { dependencies = [ @@ -83613,6 +85097,7 @@ in ]; }) sources."semver-5.7.2" + sources."yargs-parser-20.2.9" ]; }) sources."merge-stream-2.0.0" @@ -83622,20 +85107,44 @@ in sources."mime-types-2.1.35" sources."mimic-fn-2.1.0" sources."min-indent-1.0.1" - sources."minimatch-3.0.5" + (sources."minimatch-3.0.5" // { + dependencies = [ + sources."brace-expansion-1.1.11" + ]; + }) sources."minimist-1.2.8" sources."minimist-options-4.1.0" - sources."minipass-3.3.6" - sources."minipass-collect-1.0.2" - sources."minipass-fetch-2.1.2" - sources."minipass-flush-1.0.5" - sources."minipass-json-stream-1.0.1" - sources."minipass-pipeline-1.2.4" - sources."minipass-sized-1.0.3" - sources."minizlib-2.1.2" + sources."minipass-7.0.4" + sources."minipass-collect-2.0.1" + sources."minipass-fetch-3.0.4" + (sources."minipass-flush-1.0.5" // { + dependencies = [ + sources."minipass-3.3.6" + ]; + }) + (sources."minipass-json-stream-1.0.1" // { + dependencies = [ + sources."minipass-3.3.6" + ]; + }) + (sources."minipass-pipeline-1.2.4" // { + dependencies = [ + sources."minipass-3.3.6" + ]; + }) + (sources."minipass-sized-1.0.3" // { + dependencies = [ + sources."minipass-3.3.6" + ]; + }) + (sources."minizlib-2.1.2" // { + dependencies = [ + sources."minipass-3.3.6" + ]; + }) sources."mkdirp-1.0.4" sources."modify-values-1.0.1" - sources."ms-2.1.3" + sources."ms-2.1.2" (sources."multimatch-5.0.0" // { dependencies = [ sources."arrify-2.0.1" @@ -83644,17 +85153,10 @@ in sources."mute-stream-1.0.0" sources."negotiator-0.6.3" sources."neo-async-2.6.2" - sources."node-addon-api-3.2.1" sources."node-fetch-2.6.7" - (sources."node-gyp-9.4.1" // { - dependencies = [ - sources."rimraf-3.0.2" - sources."which-2.0.2" - ]; - }) - sources."node-gyp-build-4.7.0" + sources."node-gyp-10.0.1" sources."node-machine-id-1.1.12" - sources."nopt-6.0.0" + sources."nopt-7.2.0" (sources."normalize-package-data-3.0.3" // { dependencies = [ sources."hosted-git-info-4.1.0" @@ -83677,69 +85179,70 @@ in }) (sources."npm-packlist-5.1.1" // { dependencies = [ - sources."brace-expansion-2.0.1" sources."glob-8.1.0" sources."minimatch-5.1.6" sources."npm-normalize-package-bin-1.0.1" ]; }) - (sources."npm-pick-manifest-8.0.2" // { + (sources."npm-pick-manifest-9.0.0" // { dependencies = [ - sources."hosted-git-info-6.1.1" - sources."npm-package-arg-10.1.0" + sources."hosted-git-info-7.0.1" + sources."npm-package-arg-11.0.1" ]; }) (sources."npm-registry-fetch-14.0.5" // { dependencies = [ - sources."@npmcli/fs-3.1.0" - sources."brace-expansion-2.0.1" + sources."agent-base-6.0.2" (sources."cacache-17.1.4" // { dependencies = [ sources."minipass-7.0.4" ]; }) - (sources."fs-minipass-3.0.3" // { - dependencies = [ - sources."minipass-7.0.4" - ]; - }) - sources."glob-10.3.10" sources."hosted-git-info-6.1.1" + sources."http-proxy-agent-5.0.0" + sources."https-proxy-agent-5.0.1" + sources."lru-cache-7.18.3" sources."make-fetch-happen-11.1.1" - sources."minimatch-9.0.3" sources."minipass-5.0.0" - (sources."minipass-fetch-3.0.4" // { + (sources."minipass-collect-1.0.2" // { dependencies = [ - sources."minipass-7.0.4" + sources."minipass-3.3.6" ]; }) sources."npm-package-arg-10.1.0" + sources."socks-proxy-agent-7.0.0" (sources."ssri-10.0.5" // { dependencies = [ sources."minipass-7.0.4" ]; }) - sources."unique-filename-3.0.0" - sources."unique-slug-4.0.0" ]; }) sources."npm-run-path-4.0.1" sources."npmlog-6.0.2" - (sources."nx-16.10.0" // { + (sources."nx-17.2.8" // { dependencies = [ + sources."ansi-styles-4.3.0" sources."cli-spinners-2.6.1" + sources."cliui-8.0.1" + sources."emoji-regex-8.0.0" sources."glob-7.1.4" sources."lines-and-columns-2.0.4" sources."lru-cache-6.0.0" sources."semver-7.5.3" - sources."yargs-17.7.2" - sources."yargs-parser-21.1.1" + sources."string-width-4.2.3" + sources."strip-ansi-6.0.1" + sources."wrap-ansi-7.0.0" ]; }) sources."once-1.4.0" sources."onetime-5.1.2" sources."open-8.4.2" - sources."ora-5.4.1" + (sources."ora-5.4.1" // { + dependencies = [ + sources."strip-ansi-6.0.1" + ]; + }) sources."os-tmpdir-1.0.2" sources."p-finally-1.0.0" sources."p-limit-2.3.0" @@ -83752,34 +85255,24 @@ in sources."p-timeout-3.2.0" sources."p-try-2.2.0" sources."p-waterfall-2.1.1" - (sources."pacote-15.2.0" // { - dependencies = [ - sources."@npmcli/fs-3.1.0" - sources."brace-expansion-2.0.1" - (sources."cacache-17.1.4" // { - dependencies = [ - sources."minipass-7.0.4" - ]; - }) - (sources."fs-minipass-3.0.3" // { - dependencies = [ - sources."minipass-7.0.4" - ]; - }) - sources."glob-10.3.10" - sources."hosted-git-info-6.1.1" - sources."ignore-walk-6.0.3" + (sources."pacote-17.0.5" // { + dependencies = [ + sources."@sigstore/bundle-2.1.0" + sources."@sigstore/sign-2.2.0" + sources."@sigstore/tuf-2.2.0" + sources."@tufjs/canonical-json-2.0.0" + sources."@tufjs/models-2.0.0" + sources."hosted-git-info-7.0.1" + sources."ignore-walk-6.0.4" sources."minimatch-9.0.3" - sources."minipass-5.0.0" - sources."npm-package-arg-10.1.0" - sources."npm-packlist-7.0.4" - (sources."ssri-10.0.5" // { - dependencies = [ - sources."minipass-7.0.4" - ]; - }) - sources."unique-filename-3.0.0" - sources."unique-slug-4.0.0" + sources."normalize-package-data-6.0.0" + sources."npm-package-arg-11.0.1" + sources."npm-packlist-8.0.1" + sources."npm-registry-fetch-16.1.0" + sources."read-package-json-7.0.0" + sources."sigstore-2.1.0" + sources."ssri-10.0.5" + sources."tuf-js-2.1.0" ]; }) sources."parent-module-1.0.1" @@ -83794,12 +85287,7 @@ in sources."path-is-absolute-1.0.1" sources."path-key-3.1.1" sources."path-parse-1.0.7" - (sources."path-scurry-1.10.1" // { - dependencies = [ - sources."lru-cache-10.0.3" - sources."minipass-7.0.4" - ]; - }) + sources."path-scurry-1.10.1" (sources."path-type-3.0.0" // { dependencies = [ sources."pify-3.0.0" @@ -83828,11 +85316,8 @@ in sources."read-cmd-shim-4.0.0" (sources."read-package-json-6.0.4" // { dependencies = [ - sources."brace-expansion-2.0.1" - sources."glob-10.3.10" sources."hosted-git-info-6.1.1" - sources."minimatch-9.0.3" - sources."minipass-7.0.4" + sources."lru-cache-7.18.3" sources."normalize-package-data-5.0.0" ]; }) @@ -83867,7 +85352,6 @@ in sources."reusify-1.0.4" (sources."rimraf-4.4.1" // { dependencies = [ - sources."brace-expansion-2.0.1" sources."glob-9.3.5" sources."minimatch-8.0.4" sources."minipass-4.2.8" @@ -83890,40 +85374,34 @@ in sources."signal-exit-3.0.7" (sources."sigstore-1.9.0" // { dependencies = [ - sources."@npmcli/fs-3.1.0" - sources."brace-expansion-2.0.1" + sources."agent-base-6.0.2" (sources."cacache-17.1.4" // { dependencies = [ sources."minipass-7.0.4" ]; }) - (sources."fs-minipass-3.0.3" // { - dependencies = [ - sources."minipass-7.0.4" - ]; - }) - sources."glob-10.3.10" + sources."http-proxy-agent-5.0.0" + sources."https-proxy-agent-5.0.1" + sources."lru-cache-7.18.3" sources."make-fetch-happen-11.1.1" - sources."minimatch-9.0.3" sources."minipass-5.0.0" - (sources."minipass-fetch-3.0.4" // { + (sources."minipass-collect-1.0.2" // { dependencies = [ - sources."minipass-7.0.4" + sources."minipass-3.3.6" ]; }) + sources."socks-proxy-agent-7.0.0" (sources."ssri-10.0.5" // { dependencies = [ sources."minipass-7.0.4" ]; }) - sources."unique-filename-3.0.0" - sources."unique-slug-4.0.0" ]; }) sources."slash-3.0.0" sources."smart-buffer-4.2.0" sources."socks-2.7.1" - sources."socks-proxy-agent-7.0.0" + sources."socks-proxy-agent-8.0.2" sources."sort-keys-2.0.0" sources."source-map-0.6.1" sources."source-map-support-0.5.21" @@ -83934,11 +85412,24 @@ in sources."split-1.0.1" sources."split2-3.2.2" sources."sprintf-js-1.0.3" - sources."ssri-9.0.1" - sources."string-width-4.2.3" - sources."string-width-cjs-4.2.3" + (sources."ssri-9.0.1" // { + dependencies = [ + sources."minipass-3.3.6" + ]; + }) + sources."string-width-5.1.2" + (sources."string-width-cjs-4.2.3" // { + dependencies = [ + sources."emoji-regex-8.0.0" + sources."strip-ansi-6.0.1" + ]; + }) sources."string_decoder-1.3.0" - sources."strip-ansi-6.0.1" + (sources."strip-ansi-7.1.0" // { + dependencies = [ + sources."ansi-regex-6.0.1" + ]; + }) sources."strip-ansi-cjs-6.0.1" sources."strip-bom-3.0.0" sources."strip-final-newline-2.0.0" @@ -83946,7 +85437,12 @@ in sources."strong-log-transformer-2.1.0" sources."supports-color-7.2.0" sources."supports-preserve-symlinks-flag-1.0.0" - sources."tar-6.1.11" + (sources."tar-6.1.11" // { + dependencies = [ + sources."fs-minipass-2.1.0" + sources."minipass-3.3.6" + ]; + }) sources."tar-stream-2.2.0" sources."temp-dir-1.0.0" sources."text-extensions-1.9.0" @@ -83960,6 +85456,9 @@ in }) (sources."tmp-0.2.1" // { dependencies = [ + sources."brace-expansion-1.1.11" + sources."glob-7.2.3" + sources."minimatch-3.1.2" sources."rimraf-3.0.2" ]; }) @@ -83970,48 +85469,41 @@ in sources."tslib-2.6.2" (sources."tuf-js-1.1.7" // { dependencies = [ - sources."@npmcli/fs-3.1.0" - sources."brace-expansion-2.0.1" + sources."agent-base-6.0.2" (sources."cacache-17.1.4" // { dependencies = [ sources."minipass-7.0.4" ]; }) - (sources."fs-minipass-3.0.3" // { - dependencies = [ - sources."minipass-7.0.4" - ]; - }) - sources."glob-10.3.10" + sources."http-proxy-agent-5.0.0" + sources."https-proxy-agent-5.0.1" + sources."lru-cache-7.18.3" sources."make-fetch-happen-11.1.1" - sources."minimatch-9.0.3" sources."minipass-5.0.0" - (sources."minipass-fetch-3.0.4" // { + (sources."minipass-collect-1.0.2" // { dependencies = [ - sources."minipass-7.0.4" + sources."minipass-3.3.6" ]; }) + sources."socks-proxy-agent-7.0.0" (sources."ssri-10.0.5" // { dependencies = [ sources."minipass-7.0.4" ]; }) - sources."unique-filename-3.0.0" - sources."unique-slug-4.0.0" ]; }) sources."type-fest-0.18.1" sources."typedarray-0.0.6" - sources."typescript-5.3.2" + sources."typescript-5.3.3" sources."uglify-js-3.17.4" - sources."unique-filename-2.0.1" - sources."unique-slug-3.0.0" + sources."unique-filename-3.0.0" + sources."unique-slug-4.0.0" sources."universal-user-agent-6.0.1" sources."universalify-2.0.1" sources."upath-2.0.1" sources."util-deprecate-1.0.2" sources."uuid-9.0.1" - sources."v8-compile-cache-2.3.0" sources."validate-npm-package-license-3.0.4" (sources."validate-npm-package-name-5.0.0" // { dependencies = [ @@ -84021,11 +85513,28 @@ in sources."wcwidth-1.0.1" sources."webidl-conversions-3.0.1" sources."whatwg-url-5.0.0" - sources."which-3.0.1" - sources."wide-align-1.1.5" + (sources."which-4.0.0" // { + dependencies = [ + sources."isexe-3.1.1" + ]; + }) + (sources."wide-align-1.1.5" // { + dependencies = [ + sources."emoji-regex-8.0.0" + sources."string-width-4.2.3" + sources."strip-ansi-6.0.1" + ]; + }) sources."wordwrap-1.0.0" - sources."wrap-ansi-6.2.0" - sources."wrap-ansi-cjs-7.0.0" + sources."wrap-ansi-8.1.0" + (sources."wrap-ansi-cjs-7.0.0" // { + dependencies = [ + sources."ansi-styles-4.3.0" + sources."emoji-regex-8.0.0" + sources."string-width-4.2.3" + sources."strip-ansi-6.0.1" + ]; + }) sources."wrappy-1.0.2" (sources."write-file-atomic-5.0.1" // { dependencies = [ @@ -84048,13 +85557,17 @@ in sources."xtend-4.0.2" sources."y18n-5.0.8" sources."yallist-4.0.0" - (sources."yargs-16.2.0" // { + (sources."yargs-17.7.2" // { dependencies = [ - sources."cliui-7.0.4" + sources."ansi-styles-4.3.0" + sources."cliui-8.0.1" + sources."emoji-regex-8.0.0" + sources."string-width-4.2.3" + sources."strip-ansi-6.0.1" sources."wrap-ansi-7.0.0" ]; }) - sources."yargs-parser-20.2.4" + sources."yargs-parser-21.1.1" ]; buildInputs = globalBuildInputs; meta = { @@ -84076,7 +85589,6 @@ in }; dependencies = [ sources."copy-anything-2.0.6" - sources."debug-3.2.7" sources."errno-0.1.8" sources."graceful-fs-4.2.11" sources."iconv-lite-0.6.3" @@ -84084,8 +85596,7 @@ in sources."is-what-3.14.1" sources."make-dir-2.1.0" sources."mime-1.6.0" - sources."ms-2.1.3" - sources."needle-3.2.0" + sources."needle-3.3.1" sources."parse-node-version-1.0.1" sources."pify-4.0.1" sources."prr-1.0.1" @@ -84656,7 +86167,7 @@ in ]; }) sources."negotiator-0.6.3" - sources."node-gyp-build-4.7.0" + sources."node-gyp-build-4.8.0" sources."normalize-path-2.1.1" sources."oauth-sign-0.9.0" (sources."object-copy-0.1.0" // { @@ -84891,7 +86402,7 @@ in sources."debug-4.3.2" sources."emoji-regex-8.0.0" sources."escalade-3.1.1" - sources."follow-redirects-1.15.3" + sources."follow-redirects-1.15.4" sources."get-caller-file-2.0.5" sources."is-fullwidth-code-point-3.0.0" sources."ms-2.1.2" @@ -84944,7 +86455,7 @@ in sources."@types/commander-2.12.2" sources."@types/diff-3.5.8" sources."@types/get-stdin-5.0.1" - sources."@types/node-20.9.3" + sources."@types/node-20.10.7" sources."commander-2.20.3" sources."diff-3.5.0" sources."get-stdin-5.0.1" @@ -85030,7 +86541,6 @@ in sources."commander-10.0.1" sources."css-select-5.1.0" sources."css-what-6.1.0" - sources."debug-3.2.7" sources."dom-serializer-2.0.0" sources."domelementtype-2.3.0" sources."domhandler-5.0.3" @@ -85047,7 +86557,7 @@ in sources."markdown-link-extractor-3.1.0" sources."marked-4.3.0" sources."ms-2.1.3" - sources."needle-3.2.0" + sources."needle-3.3.1" sources."nth-check-2.1.1" sources."parse5-7.1.2" sources."parse5-htmlparser2-tree-adapter-7.0.0" @@ -85716,7 +87226,7 @@ in sources."ansi-styles-6.2.1" sources."balanced-match-1.0.2" sources."brace-expansion-2.0.1" - sources."cacache-18.0.0" + sources."cacache-18.0.2" sources."chownr-2.0.0" sources."clean-stack-2.2.0" sources."color-convert-2.0.1" @@ -85746,15 +87256,11 @@ in sources."is-lambda-1.0.1" sources."isexe-2.0.0" sources."jackspeak-2.3.6" - sources."lru-cache-10.0.3" + sources."lru-cache-10.1.0" sources."make-fetch-happen-13.0.0" sources."minimatch-9.0.3" sources."minipass-7.0.4" - (sources."minipass-collect-1.0.2" // { - dependencies = [ - sources."minipass-3.3.6" - ]; - }) + sources."minipass-collect-2.0.1" sources."minipass-fetch-3.0.4" (sources."minipass-flush-1.0.5" // { dependencies = [ @@ -85852,10 +87358,10 @@ in node-gyp-build = nodeEnv.buildNodePackage { name = "node-gyp-build"; packageName = "node-gyp-build"; - version = "4.7.0"; + version = "4.8.0"; src = fetchurl { - url = "https://registry.npmjs.org/node-gyp-build/-/node-gyp-build-4.7.0.tgz"; - sha512 = "PbZERfeFdrHQOOXiAKOY0VPbykZy90ndPKk0d+CFDegTKmWp1VgOTz2xACVbr1BjCWxrQp68CXtvNsveFhqDJg=="; + url = "https://registry.npmjs.org/node-gyp-build/-/node-gyp-build-4.8.0.tgz"; + sha512 = "u6fs2AEUljNho3EYTJNBfImO5QTo/J/1Etd+NVdCj7qWKUSN/bSLkZwhDv7I+w/MSC6qJ4cknepkAYykDdK8og=="; }; buildInputs = globalBuildInputs; meta = { @@ -85959,26 +87465,26 @@ in node-red = nodeEnv.buildNodePackage { name = "node-red"; packageName = "node-red"; - version = "3.1.0"; + version = "3.1.3"; src = fetchurl { - url = "https://registry.npmjs.org/node-red/-/node-red-3.1.0.tgz"; - sha512 = "khGc+Fh8YeuDR2KZ7lCTEvAhbRDiXpmMSfvX6eKxt7TER+WVG0U8TdXyiFq6K+3ELnJz54vITJJ3DZ5hYzijoQ=="; + url = "https://registry.npmjs.org/node-red/-/node-red-3.1.3.tgz"; + sha512 = "NUihfCfMw9sPjiwe5pAHephFWW1QCv5v13CG/I6qtJ0wCSMtu5NKXrz53dmdnKJQsDMDOqipAMBcG2qmrVPmeA=="; }; dependencies = [ - sources."@babel/runtime-7.23.4" + sources."@babel/runtime-7.23.7" sources."@mapbox/node-pre-gyp-1.0.11" - sources."@node-red/editor-api-3.1.0" - sources."@node-red/editor-client-3.1.0" - (sources."@node-red/nodes-3.1.0" // { + sources."@node-red/editor-api-3.1.3" + sources."@node-red/editor-client-3.1.3" + (sources."@node-red/nodes-3.1.3" // { dependencies = [ sources."cookie-0.5.0" sources."iconv-lite-0.6.3" sources."media-typer-1.1.0" ]; }) - sources."@node-red/registry-3.1.0" - sources."@node-red/runtime-3.1.0" - sources."@node-red/util-3.1.0" + sources."@node-red/registry-3.1.3" + sources."@node-red/runtime-3.1.3" + sources."@node-red/util-3.1.3" sources."@sindresorhus/is-5.6.0" sources."@szmarczak/http-timer-5.0.1" sources."@types/http-cache-semantics-4.0.4" @@ -86006,7 +87512,7 @@ in sources."array-flatten-1.1.1" sources."async-mutex-0.4.0" sources."asynckit-0.4.0" - sources."axios-1.6.2" + sources."axios-1.6.5" sources."balanced-match-1.0.2" sources."base64-js-1.5.1" (sources."basic-auth-2.0.1" // { @@ -86104,7 +87610,7 @@ in sources."express-session-1.17.3" sources."fast-deep-equal-3.1.3" sources."finalhandler-1.2.0" - sources."follow-redirects-1.15.3" + sources."follow-redirects-1.15.4" sources."form-data-4.0.0" sources."form-data-encoder-2.1.4" sources."forwarded-0.2.0" @@ -86229,7 +87735,7 @@ in sources."negotiator-0.6.3" sources."node-addon-api-5.1.0" sources."node-fetch-2.7.0" - sources."node-gyp-build-4.7.0" + sources."node-gyp-build-4.8.0" (sources."node-red-admin-3.1.1" // { dependencies = [ sources."bcrypt-5.1.1" @@ -86282,7 +87788,7 @@ in sources."safe-buffer-5.1.2" ]; }) - sources."regenerator-runtime-0.14.0" + sources."regenerator-runtime-0.14.1" sources."reinterval-1.1.0" sources."require-from-string-2.0.2" sources."requires-port-1.0.0" @@ -86577,10 +88083,10 @@ in nodemon = nodeEnv.buildNodePackage { name = "nodemon"; packageName = "nodemon"; - version = "3.0.1"; + version = "3.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/nodemon/-/nodemon-3.0.1.tgz"; - sha512 = "g9AZ7HmkhQkqXkRc20w+ZfQ73cHLbE8hnPbtaFbFtCumZsjyMhKk9LajQ07U5Ux28lvFjZ5X7HvWR1xzU8jHVw=="; + url = "https://registry.npmjs.org/nodemon/-/nodemon-3.0.2.tgz"; + sha512 = "9qIN2LNTrEzpOPBaWHTm4Asy1LxXLSickZStAQ4IZe7zsoIpD/A7LWxhZV3t4Zu352uBcqVnRsDXSMR2Sc3lTA=="; }; dependencies = [ sources."abbrev-1.1.1" @@ -86591,7 +88097,7 @@ in sources."braces-3.0.2" sources."chokidar-3.5.3" sources."concat-map-0.0.1" - sources."debug-3.2.7" + sources."debug-4.3.4" sources."fill-range-7.0.1" sources."fsevents-2.3.3" sources."glob-parent-5.1.2" @@ -86603,7 +88109,7 @@ in sources."is-number-7.0.0" sources."lru-cache-6.0.0" sources."minimatch-3.1.2" - sources."ms-2.1.3" + sources."ms-2.1.2" sources."nopt-1.0.10" sources."normalize-path-3.0.0" sources."picomatch-2.3.1" @@ -86630,13 +88136,13 @@ in np = nodeEnv.buildNodePackage { name = "np"; packageName = "np"; - version = "8.0.4"; + version = "9.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/np/-/np-8.0.4.tgz"; - sha512 = "a4s1yESHcIwsrk/oaTekfbhb1R/2z2yyfVLX6Atl54w/9+QR01qeYyK3vMWgJ0UY+kYsGzQXausgvUX0pkmIMg=="; + url = "https://registry.npmjs.org/np/-/np-9.2.0.tgz"; + sha512 = "VYA8IKyx5XJqROr2vu8NAstfgBznrnOu3PUByFl3TBwzQVkeGC+gzOPzGbvYKM1QwlX6Gt7kVSPMzDP4qkSs1g=="; }; dependencies = [ - (sources."@babel/code-frame-7.23.4" // { + (sources."@babel/code-frame-7.23.5" // { dependencies = [ sources."chalk-2.4.2" sources."escape-string-regexp-1.0.5" @@ -86675,11 +88181,11 @@ in sources."@types/cacheable-request-6.0.3" sources."@types/http-cache-semantics-4.0.4" sources."@types/keyv-3.1.4" - sources."@types/node-20.9.3" + sources."@types/node-20.10.7" sources."@types/normalize-package-data-2.4.4" sources."@types/responselike-1.0.3" sources."aggregate-error-4.0.1" - sources."all-package-names-2.0.784" + sources."all-package-names-2.0.818" sources."ansi-align-3.0.1" sources."ansi-escapes-4.3.2" sources."ansi-regex-5.0.1" @@ -86688,7 +88194,7 @@ in sources."argparse-2.0.1" sources."balanced-match-1.0.2" sources."base64-js-1.5.1" - sources."big-integer-1.6.51" + sources."big-integer-1.6.52" sources."bl-4.1.0" (sources."boxen-7.1.1" // { dependencies = [ @@ -86717,12 +88223,12 @@ in sources."callsites-3.1.0" sources."camelcase-7.0.1" sources."chalk-5.3.0" + sources."chalk-template-1.1.0" sources."chardet-0.7.0" - sources."ci-info-3.9.0" sources."clean-stack-4.2.0" sources."cli-boxes-3.0.0" sources."cli-cursor-3.1.0" - sources."cli-spinners-2.9.1" + sources."cli-spinners-2.9.2" (sources."cli-truncate-0.2.1" // { dependencies = [ sources."ansi-regex-2.1.1" @@ -86764,7 +88270,15 @@ in ]; }) sources."deep-extend-0.6.0" - sources."default-browser-4.0.0" + (sources."default-browser-4.0.0" // { + dependencies = [ + sources."execa-7.2.0" + sources."get-stream-6.0.1" + sources."human-signals-4.3.1" + sources."onetime-6.0.0" + sources."signal-exit-3.0.7" + ]; + }) sources."default-browser-id-3.0.0" sources."defaults-1.0.4" sources."defer-to-connect-2.0.1" @@ -86784,11 +88298,15 @@ in sources."error-ex-1.3.2" sources."escape-goat-4.0.0" sources."escape-string-regexp-5.0.0" - sources."execa-7.2.0" - sources."exit-hook-3.2.0" + (sources."execa-8.0.1" // { + dependencies = [ + sources."onetime-6.0.0" + ]; + }) + sources."exit-hook-4.0.0" sources."external-editor-3.1.0" sources."fast-glob-3.3.2" - sources."fastq-1.15.0" + sources."fastq-1.16.0" sources."figures-5.0.0" sources."fill-range-7.0.1" (sources."find-up-4.1.0" // { @@ -86796,15 +88314,21 @@ in sources."path-exists-4.0.0" ]; }) + sources."find-up-simple-1.0.0" sources."form-data-encoder-2.1.4" sources."fs.realpath-1.0.0" sources."function-bind-1.1.2" sources."get-intrinsic-1.2.2" - sources."get-stream-6.0.1" + sources."get-stream-8.0.1" sources."github-url-from-git-1.5.0" sources."glob-7.2.3" sources."glob-parent-5.1.2" - sources."global-dirs-3.0.1" + sources."global-directory-4.0.1" + (sources."global-dirs-3.0.1" // { + dependencies = [ + sources."ini-2.0.0" + ]; + }) sources."globby-13.2.2" sources."gopd-1.0.1" sources."got-11.8.6" @@ -86820,14 +88344,14 @@ in sources."has-symbols-1.0.3" sources."has-yarn-3.0.0" sources."hasown-2.0.0" - sources."hosted-git-info-6.1.1" + sources."hosted-git-info-7.0.1" sources."http-cache-semantics-4.1.1" sources."http2-wrapper-1.0.3" - sources."human-signals-4.3.1" + sources."human-signals-5.0.0" sources."iconv-lite-0.4.24" sources."ieee754-1.2.1" sources."ignore-5.3.0" - (sources."ignore-walk-6.0.3" // { + (sources."ignore-walk-6.0.4" // { dependencies = [ sources."brace-expansion-2.0.1" sources."minimatch-9.0.3" @@ -86842,9 +88366,10 @@ in }) sources."imurmurhash-0.1.4" sources."indent-string-5.0.0" + sources."index-to-position-0.1.2" sources."inflight-1.0.6" sources."inherits-2.0.4" - sources."ini-2.0.0" + sources."ini-4.1.1" sources."inquirer-9.2.12" (sources."inquirer-autosubmit-prompt-0.2.0" // { dependencies = [ @@ -86863,6 +88388,7 @@ in sources."restore-cursor-2.0.0" sources."run-async-2.4.1" sources."rxjs-6.6.7" + sources."signal-exit-3.0.7" (sources."string-width-2.1.1" // { dependencies = [ sources."strip-ansi-4.0.0" @@ -86876,18 +88402,14 @@ in ]; }) sources."is-arrayish-0.2.1" - sources."is-ci-3.0.1" sources."is-core-module-2.13.1" sources."is-docker-3.0.0" sources."is-extglob-2.1.1" sources."is-fullwidth-code-point-3.0.0" sources."is-glob-4.0.3" + sources."is-in-ci-0.1.0" sources."is-inside-container-1.0.0" - (sources."is-installed-globally-0.4.0" // { - dependencies = [ - sources."is-path-inside-3.0.3" - ]; - }) + sources."is-installed-globally-1.0.0" sources."is-interactive-2.0.0" sources."is-name-taken-2.0.0" sources."is-npm-6.0.0" @@ -86911,7 +88433,6 @@ in sources."is-docker-2.2.1" ]; }) - sources."is-yarn-global-0.4.1" sources."isexe-2.0.0" sources."issue-regex-4.1.0" sources."js-tokens-4.0.0" @@ -86968,13 +88489,14 @@ in sources."mimic-fn-1.2.0" sources."onetime-2.0.1" sources."restore-cursor-2.0.0" + sources."signal-exit-3.0.7" ]; }) sources."locate-path-5.0.0" sources."lodash-4.17.21" sources."lodash.isequal-4.5.0" sources."lodash.zip-4.2.0" - sources."log-symbols-5.1.0" + sources."log-symbols-6.0.0" (sources."log-update-2.3.0" // { dependencies = [ sources."ansi-escapes-3.2.0" @@ -86984,18 +88506,20 @@ in sources."mimic-fn-1.2.0" sources."onetime-2.0.1" sources."restore-cursor-2.0.0" + sources."signal-exit-3.0.7" sources."string-width-2.1.1" sources."strip-ansi-4.0.0" sources."wrap-ansi-3.0.1" ]; }) sources."lowercase-keys-2.0.0" - sources."lru-cache-7.18.3" + sources."lru-cache-10.1.0" sources."meow-12.1.1" sources."merge-stream-2.0.0" sources."merge2-1.4.1" sources."micromatch-4.0.5" - sources."mimic-fn-2.1.0" + sources."mimic-fn-4.0.0" + sources."mimic-function-5.0.0" sources."mimic-response-1.0.1" sources."minimatch-3.1.2" sources."minimist-1.2.8" @@ -87005,15 +88529,10 @@ in sources."type-fest-2.19.0" ]; }) - (sources."normalize-package-data-3.0.3" // { - dependencies = [ - sources."hosted-git-info-4.1.0" - sources."lru-cache-6.0.0" - ]; - }) + sources."normalize-package-data-6.0.0" sources."normalize-url-6.1.0" sources."npm-name-7.1.1" - (sources."npm-run-path-5.1.0" // { + (sources."npm-run-path-5.2.0" // { dependencies = [ sources."path-key-4.0.0" ]; @@ -87021,11 +88540,7 @@ in sources."number-is-nan-1.0.1" sources."object-assign-4.1.1" sources."once-1.4.0" - (sources."onetime-6.0.0" // { - dependencies = [ - sources."mimic-fn-4.0.0" - ]; - }) + sources."onetime-7.0.0" sources."open-9.1.0" (sources."ora-5.4.1" // { dependencies = [ @@ -87055,7 +88570,6 @@ in sources."p-map-5.5.0" (sources."p-memoize-7.1.1" // { dependencies = [ - sources."mimic-fn-4.0.0" sources."type-fest-3.13.1" ]; }) @@ -87067,6 +88581,7 @@ in sources."@szmarczak/http-timer-5.0.1" sources."cacheable-lookup-7.0.0" sources."cacheable-request-10.2.14" + sources."get-stream-6.0.1" sources."got-12.6.1" sources."http2-wrapper-2.2.1" sources."lowercase-keys-3.0.0" @@ -87086,15 +88601,7 @@ in sources."path-key-3.1.1" sources."path-type-4.0.0" sources."picomatch-2.3.1" - (sources."pkg-dir-7.0.0" // { - dependencies = [ - sources."find-up-6.3.0" - sources."locate-path-7.2.0" - sources."p-limit-4.0.0" - sources."p-locate-6.0.0" - sources."yocto-queue-1.0.0" - ]; - }) + sources."pkg-dir-8.0.0" sources."progress-2.0.3" sources."proto-list-1.2.4" sources."pump-3.0.0" @@ -87112,19 +88619,15 @@ in sources."parse-json-object-1.1.0" ]; }) - (sources."read-pkg-7.1.0" // { + (sources."read-package-up-11.0.0" // { dependencies = [ - sources."type-fest-2.19.0" + sources."type-fest-4.9.0" ]; }) - (sources."read-pkg-up-9.1.0" // { + (sources."read-pkg-9.0.1" // { dependencies = [ - sources."find-up-6.3.0" - sources."locate-path-7.2.0" - sources."p-limit-4.0.0" - sources."p-locate-6.0.0" - sources."type-fest-2.19.0" - sources."yocto-queue-1.0.0" + sources."parse-json-8.1.0" + sources."type-fest-4.9.0" ]; }) sources."readable-stream-3.6.2" @@ -87140,7 +88643,9 @@ in sources."responselike-2.0.1" (sources."restore-cursor-3.1.0" // { dependencies = [ + sources."mimic-fn-2.1.0" sources."onetime-5.1.2" + sources."signal-exit-3.0.7" ]; }) sources."reusify-1.0.4" @@ -87148,10 +88653,13 @@ in (sources."run-applescript-5.0.0" // { dependencies = [ sources."execa-5.1.1" + sources."get-stream-6.0.1" sources."human-signals-2.1.0" sources."is-stream-2.0.1" + sources."mimic-fn-2.1.0" sources."npm-run-path-4.0.1" sources."onetime-5.1.2" + sources."signal-exit-3.0.7" sources."strip-final-newline-2.0.0" ]; }) @@ -87174,7 +88682,7 @@ in sources."set-function-length-1.1.1" sources."shebang-command-2.0.0" sources."shebang-regex-3.0.0" - sources."signal-exit-3.0.7" + sources."signal-exit-4.1.0" sources."slash-4.0.0" sources."slice-ansi-0.0.4" sources."spdx-correct-3.2.0" @@ -87210,11 +88718,17 @@ in sources."types-eslintrc-1.0.3" sources."types-json-1.2.2" sources."types-pkg-json-1.2.1" - sources."typescript-5.3.2" + sources."typescript-5.3.3" sources."undici-types-5.26.5" + sources."unicorn-magic-0.1.0" sources."unique-string-3.0.0" sources."untildify-4.0.0" - sources."update-notifier-6.0.2" + (sources."update-notifier-7.0.0" // { + dependencies = [ + sources."is-installed-globally-0.4.0" + sources."is-path-inside-3.0.3" + ]; + }) sources."util-deprecate-1.0.2" sources."vali-date-1.0.0" sources."validate-npm-package-license-3.0.4" @@ -87237,7 +88751,11 @@ in ]; }) sources."wrappy-1.0.2" - sources."write-file-atomic-3.0.3" + (sources."write-file-atomic-3.0.3" // { + dependencies = [ + sources."signal-exit-3.0.7" + ]; + }) sources."xdg-basedir-5.1.0" sources."yallist-4.0.0" sources."yocto-queue-0.1.0" @@ -87255,10 +88773,10 @@ in npm = nodeEnv.buildNodePackage { name = "npm"; packageName = "npm"; - version = "10.2.4"; + version = "10.2.5"; src = fetchurl { - url = "https://registry.npmjs.org/npm/-/npm-10.2.4.tgz"; - sha512 = "umEuYneVEYO9KoEEI8n2sSGmNQeqco/3BSeacRlqIkCzw4E7XGtYSWMeJobxzr6hZ2n9cM+u5TsMTcC5bAgoWA=="; + url = "https://registry.npmjs.org/npm/-/npm-10.2.5.tgz"; + sha512 = "lXdZ7titEN8CH5YJk9C/aYRU9JeDxQ4d8rwIIDsvH3SMjLjHTukB2CFstMiB30zXs4vCrPN2WH6cDq1yHBeJAw=="; }; buildInputs = globalBuildInputs; meta = { @@ -87327,59 +88845,94 @@ in orval = nodeEnv.buildNodePackage { name = "orval"; packageName = "orval"; - version = "6.20.0"; + version = "6.23.0"; src = fetchurl { - url = "https://registry.npmjs.org/orval/-/orval-6.20.0.tgz"; - sha512 = "hBH0oRgV3Opwd0kOZa3An0+bPESlclzLqLA37jCGky4yNCwG3DTvhgGRqCgB0De6hBoOlOcRs/jh919LfaALIA=="; + url = "https://registry.npmjs.org/orval/-/orval-6.23.0.tgz"; + sha512 = "elAyEIIpf/1kydP5V33UtONfkuN3v7L8ogzF/eJNzhvv4zsq8TwEADiY8GAw5EyzOiFFF07SSJxtoY4ez1FmFg=="; }; dependencies = [ + sources."@adobe/css-tools-4.3.2" sources."@apidevtools/json-schema-ref-parser-9.0.6" sources."@apidevtools/openapi-schemas-2.1.0" sources."@apidevtools/swagger-methods-3.0.2" sources."@apidevtools/swagger-parser-10.1.0" + sources."@asamuzakjp/dom-selector-2.0.1" sources."@asyncapi/specs-4.3.1" - sources."@esbuild/android-arm-0.19.7" - sources."@esbuild/android-arm64-0.19.7" - sources."@esbuild/android-x64-0.19.7" - sources."@esbuild/darwin-arm64-0.19.7" - sources."@esbuild/darwin-x64-0.19.7" - sources."@esbuild/freebsd-arm64-0.19.7" - sources."@esbuild/freebsd-x64-0.19.7" - sources."@esbuild/linux-arm-0.19.7" - sources."@esbuild/linux-arm64-0.19.7" - sources."@esbuild/linux-ia32-0.19.7" - sources."@esbuild/linux-loong64-0.19.7" - sources."@esbuild/linux-mips64el-0.19.7" - sources."@esbuild/linux-ppc64-0.19.7" - sources."@esbuild/linux-riscv64-0.19.7" - sources."@esbuild/linux-s390x-0.19.7" - sources."@esbuild/linux-x64-0.19.7" - sources."@esbuild/netbsd-x64-0.19.7" - sources."@esbuild/openbsd-x64-0.19.7" - sources."@esbuild/sunos-x64-0.19.7" - sources."@esbuild/win32-arm64-0.19.7" - sources."@esbuild/win32-ia32-0.19.7" - sources."@esbuild/win32-x64-0.19.7" + sources."@edge-runtime/primitives-4.0.5" + sources."@edge-runtime/vm-3.1.7" + sources."@esbuild/aix-ppc64-0.19.11" + sources."@esbuild/android-arm-0.19.11" + sources."@esbuild/android-arm64-0.19.11" + sources."@esbuild/android-x64-0.19.11" + sources."@esbuild/darwin-arm64-0.19.11" + sources."@esbuild/darwin-x64-0.19.11" + sources."@esbuild/freebsd-arm64-0.19.11" + sources."@esbuild/freebsd-x64-0.19.11" + sources."@esbuild/linux-arm-0.19.11" + sources."@esbuild/linux-arm64-0.19.11" + sources."@esbuild/linux-ia32-0.19.11" + sources."@esbuild/linux-loong64-0.19.11" + sources."@esbuild/linux-mips64el-0.19.11" + sources."@esbuild/linux-ppc64-0.19.11" + sources."@esbuild/linux-riscv64-0.19.11" + sources."@esbuild/linux-s390x-0.19.11" + sources."@esbuild/linux-x64-0.19.11" + sources."@esbuild/netbsd-x64-0.19.11" + sources."@esbuild/openbsd-x64-0.19.11" + sources."@esbuild/sunos-x64-0.19.11" + sources."@esbuild/win32-arm64-0.19.11" + sources."@esbuild/win32-ia32-0.19.11" + sources."@esbuild/win32-x64-0.19.11" sources."@exodus/schemasafe-1.3.0" sources."@ibm-cloud/openapi-ruleset-1.14.2" sources."@ibm-cloud/openapi-ruleset-utilities-1.3.0" + (sources."@isaacs/cliui-8.0.2" // { + dependencies = [ + sources."ansi-regex-6.0.1" + sources."ansi-styles-6.2.1" + sources."emoji-regex-9.2.2" + sources."string-width-5.1.2" + sources."strip-ansi-7.1.0" + sources."wrap-ansi-8.1.0" + ]; + }) + sources."@jest/schemas-29.6.3" + sources."@jridgewell/gen-mapping-0.3.3" + sources."@jridgewell/resolve-uri-3.1.1" + sources."@jridgewell/set-array-1.1.2" + sources."@jridgewell/source-map-0.3.5" + sources."@jridgewell/sourcemap-codec-1.4.15" + sources."@jridgewell/trace-mapping-0.3.20" sources."@jsdevtools/ono-7.1.3" sources."@jsep-plugin/regex-1.0.3" sources."@jsep-plugin/ternary-1.1.3" - sources."@nodelib/fs.scandir-2.1.5" - sources."@nodelib/fs.stat-2.0.5" - sources."@nodelib/fs.walk-1.2.8" - sources."@orval/angular-6.20.0" - sources."@orval/axios-6.20.0" - (sources."@orval/core-6.20.0" // { + (sources."@mapbox/node-pre-gyp-1.0.11" // { dependencies = [ - sources."fs-extra-11.1.1" + sources."agent-base-6.0.2" + sources."detect-libc-2.0.2" + sources."https-proxy-agent-5.0.1" + (sources."make-dir-3.1.0" // { + dependencies = [ + sources."semver-6.3.1" + ]; + }) + sources."semver-7.5.4" ]; }) - sources."@orval/msw-6.20.0" - sources."@orval/query-6.20.0" - sources."@orval/swr-6.20.0" - sources."@orval/zod-6.20.0" + sources."@nodelib/fs.scandir-2.1.5" + sources."@nodelib/fs.stat-2.0.5" + sources."@nodelib/fs.walk-1.2.8" + sources."@orval/angular-6.23.0" + sources."@orval/axios-6.23.0" + sources."@orval/core-6.23.0" + sources."@orval/mock-6.23.0" + sources."@orval/query-6.23.0" + sources."@orval/swr-6.23.0" + sources."@orval/zod-6.23.0" + sources."@polka/url-1.0.0-next.24" + sources."@puppeteer/browsers-1.9.1" + sources."@sinclair/typebox-0.27.8" + sources."@sindresorhus/is-5.6.0" sources."@stoplight/better-ajv-errors-1.0.3" sources."@stoplight/json-3.21.0" (sources."@stoplight/json-ref-readers-1.2.2" // { @@ -87388,7 +88941,7 @@ in ]; }) sources."@stoplight/json-ref-resolver-3.1.6" - sources."@stoplight/ordered-object-literal-1.0.4" + sources."@stoplight/ordered-object-literal-1.0.5" sources."@stoplight/path-1.3.2" (sources."@stoplight/spectral-core-1.18.3" // { dependencies = [ @@ -87400,7 +88953,7 @@ in sources."@stoplight/spectral-functions-1.7.2" sources."@stoplight/spectral-parsers-1.0.3" sources."@stoplight/spectral-ref-resolver-1.0.4" - sources."@stoplight/spectral-rulesets-1.18.0" + sources."@stoplight/spectral-rulesets-1.18.1" (sources."@stoplight/spectral-runtime-1.1.2" // { dependencies = [ sources."@stoplight/types-12.5.0" @@ -87409,13 +88962,83 @@ in sources."@stoplight/types-13.20.0" sources."@stoplight/yaml-4.2.3" sources."@stoplight/yaml-ast-parser-0.0.48" + sources."@szmarczak/http-timer-5.0.1" + sources."@tootallnate/once-2.0.0" + sources."@tootallnate/quickjs-emscripten-0.23.0" + sources."@types/chai-4.3.11" + sources."@types/chai-subset-1.3.5" sources."@types/es-aggregate-error-1.0.6" + sources."@types/estree-1.0.5" + sources."@types/http-cache-semantics-4.0.4" sources."@types/json-schema-7.0.15" - sources."@types/node-20.9.3" - sources."@types/urijs-1.19.24" + sources."@types/node-20.10.7" + sources."@types/urijs-1.19.25" + sources."@types/which-2.0.2" + sources."@types/ws-8.5.10" + sources."@types/yauzl-2.10.3" + (sources."@vitest/browser-1.1.3" // { + dependencies = [ + sources."@vitest/expect-1.1.3" + sources."@vitest/runner-1.1.3" + sources."@vitest/snapshot-1.1.3" + sources."@vitest/spy-1.1.3" + sources."@vitest/utils-1.1.3" + sources."execa-8.0.1" + sources."local-pkg-0.5.0" + sources."p-limit-5.0.0" + sources."tinypool-0.8.1" + sources."vite-node-1.1.3" + sources."vitest-1.1.3" + ]; + }) + sources."@vitest/expect-0.34.6" + sources."@vitest/runner-0.34.6" + sources."@vitest/snapshot-0.34.6" + sources."@vitest/spy-0.34.6" + (sources."@vitest/ui-1.1.3" // { + dependencies = [ + sources."@vitest/expect-1.1.3" + sources."@vitest/runner-1.1.3" + sources."@vitest/snapshot-1.1.3" + sources."@vitest/spy-1.1.3" + sources."@vitest/utils-1.1.3" + sources."execa-8.0.1" + sources."local-pkg-0.5.0" + sources."p-limit-5.0.0" + sources."tinypool-0.8.1" + sources."vite-node-1.1.3" + sources."vitest-1.1.3" + ]; + }) + sources."@vitest/utils-0.34.6" + (sources."@wdio/config-8.27.0" // { + dependencies = [ + sources."brace-expansion-2.0.1" + sources."glob-10.3.10" + sources."minimatch-9.0.3" + ]; + }) + (sources."@wdio/logger-8.24.12" // { + dependencies = [ + sources."ansi-regex-6.0.1" + sources."chalk-5.3.0" + sources."strip-ansi-7.1.0" + ]; + }) + sources."@wdio/protocols-8.24.12" + sources."@wdio/repl-8.24.12" + sources."@wdio/types-8.27.0" + sources."@wdio/utils-8.27.0" + sources."abbrev-1.1.1" sources."abort-controller-3.0.0" - sources."acorn-8.11.2" - sources."ajv-8.12.0" + sources."acorn-8.11.3" + sources."acorn-walk-8.3.1" + sources."agent-base-7.1.0" + (sources."ajv-8.12.0" // { + dependencies = [ + sources."fast-deep-equal-3.1.3" + ]; + }) sources."ajv-draft-04-1.0.0" sources."ajv-errors-3.0.0" sources."ajv-formats-2.1.1" @@ -87423,112 +89046,373 @@ in sources."ansi-regex-5.0.1" sources."ansi-styles-4.3.0" sources."anymatch-3.1.3" + sources."aproba-2.0.0" + sources."archiver-6.0.1" + (sources."archiver-utils-4.0.1" // { + dependencies = [ + sources."brace-expansion-2.0.1" + sources."glob-8.1.0" + sources."minimatch-5.1.6" + ]; + }) + sources."are-we-there-yet-2.0.0" sources."argparse-1.0.10" + sources."aria-query-5.3.0" sources."array-buffer-byte-length-1.0.0" sources."array-union-2.1.0" sources."arraybuffer.prototype.slice-1.0.2" + sources."assertion-error-1.1.0" + sources."ast-types-0.13.4" sources."astring-1.8.6" + sources."async-3.2.5" + sources."asynckit-0.4.0" sources."available-typed-arrays-1.0.5" + sources."b4a-1.6.4" sources."balanced-match-1.0.2" + sources."base64-js-1.5.1" + sources."basic-ftp-5.0.4" + sources."bidi-js-1.0.3" + sources."big-integer-1.6.52" + sources."binary-0.3.0" sources."binary-extensions-2.2.0" + sources."bl-4.1.0" + sources."bluebird-3.4.7" sources."brace-expansion-1.1.11" sources."braces-3.0.2" + sources."buffer-5.7.1" + sources."buffer-crc32-0.2.13" + sources."buffer-from-1.1.2" + sources."buffer-indexof-polyfill-1.0.2" + sources."buffers-0.1.1" + sources."bufferutil-4.0.8" sources."cac-6.7.14" + sources."cacheable-lookup-7.0.0" + (sources."cacheable-request-10.2.14" // { + dependencies = [ + sources."get-stream-6.0.1" + sources."mimic-response-4.0.0" + ]; + }) sources."call-bind-1.0.5" sources."call-me-maybe-1.0.2" + sources."canvas-2.11.2" + sources."chai-4.4.0" + sources."chainsaw-0.1.0" sources."chalk-4.1.2" + sources."check-error-1.0.3" sources."chokidar-3.5.3" + sources."chownr-2.0.0" + sources."chrome-launcher-1.1.0" + sources."chromium-bidi-0.4.16" sources."cliui-8.0.1" sources."color-convert-2.0.1" sources."color-name-1.1.4" + sources."color-support-1.1.3" + sources."combined-stream-1.0.8" + sources."commander-2.20.3" sources."compare-versions-6.1.0" + sources."compress-commons-5.0.1" sources."concat-map-0.0.1" + sources."console-control-strings-1.1.0" + sources."copy-anything-2.0.6" + sources."core-util-is-1.0.3" + sources."crc-32-1.2.2" + sources."crc32-stream-5.0.0" + sources."cross-fetch-4.0.0" sources."cross-spawn-7.0.3" + sources."css-shorthand-properties-1.1.1" + sources."css-tree-2.3.1" + sources."css-value-0.0.1" + sources."css.escape-1.5.1" + sources."cssstyle-4.0.1" + sources."data-uri-to-buffer-6.0.1" + (sources."data-urls-5.0.0" // { + dependencies = [ + sources."tr46-5.0.0" + sources."webidl-conversions-7.0.0" + sources."whatwg-mimetype-4.0.0" + sources."whatwg-url-14.0.0" + ]; + }) sources."debug-4.3.4" + sources."decamelize-6.0.0" + sources."decimal.js-10.4.3" + sources."decompress-response-4.2.1" + sources."deep-eql-4.1.3" + sources."deepmerge-ts-5.1.0" + sources."defer-to-connect-2.0.1" sources."define-data-property-1.1.1" sources."define-properties-1.2.1" + sources."degenerator-5.0.1" + sources."delayed-stream-1.0.0" + sources."delegates-1.0.0" sources."dependency-graph-0.11.0" + sources."dequal-2.0.3" + sources."detect-libc-1.0.3" + (sources."devtools-8.27.0" // { + dependencies = [ + sources."@puppeteer/browsers-1.3.0" + sources."agent-base-6.0.2" + sources."chownr-1.1.4" + sources."chromium-bidi-0.4.9" + sources."cross-fetch-3.1.6" + sources."devtools-protocol-0.0.1120988" + sources."http-proxy-agent-5.0.0" + sources."https-proxy-agent-5.0.1" + sources."isexe-3.1.1" + sources."puppeteer-core-20.3.0" + sources."tar-fs-2.1.1" + sources."tar-stream-2.2.0" + sources."which-4.0.0" + sources."ws-8.13.0" + sources."yargs-17.7.1" + ]; + }) + sources."devtools-protocol-0.0.1237913" + sources."diff-sequences-29.6.3" sources."dir-glob-3.0.1" + (sources."duplexer2-0.1.4" // { + dependencies = [ + sources."isarray-1.0.0" + sources."readable-stream-2.3.8" + sources."safe-buffer-5.1.2" + sources."string_decoder-1.1.1" + ]; + }) + sources."eastasianwidth-0.2.0" + sources."edge-paths-3.0.5" + (sources."edgedriver-5.3.9" // { + dependencies = [ + sources."data-uri-to-buffer-4.0.1" + sources."isexe-3.1.1" + sources."node-fetch-3.3.2" + sources."which-4.0.0" + ]; + }) sources."emoji-regex-8.0.0" sources."encoding-0.1.13" + sources."end-of-stream-1.4.4" sources."enquirer-2.4.1" + sources."entities-4.5.0" + sources."errno-0.1.8" sources."es-abstract-1.22.3" sources."es-aggregate-error-1.0.11" sources."es-set-tostringtag-2.0.2" sources."es-to-primitive-1.2.1" sources."es6-promise-3.3.1" - sources."esbuild-0.19.7" + sources."esbuild-0.19.11" sources."escalade-3.1.1" + sources."escape-string-regexp-4.0.0" + sources."escodegen-2.1.0" sources."esprima-4.0.1" + sources."estraverse-5.3.0" + sources."estree-walker-3.0.3" sources."esutils-2.0.3" sources."event-target-shim-5.0.1" - sources."execa-5.1.1" - sources."fast-deep-equal-3.1.3" + (sources."execa-5.1.1" // { + dependencies = [ + sources."get-stream-6.0.1" + sources."human-signals-2.1.0" + sources."is-stream-2.0.1" + sources."mimic-fn-2.1.0" + sources."npm-run-path-4.0.1" + sources."onetime-5.1.2" + sources."signal-exit-3.0.7" + sources."strip-final-newline-2.0.0" + ]; + }) + (sources."extract-zip-2.0.1" // { + dependencies = [ + sources."get-stream-5.2.0" + ]; + }) + sources."fast-deep-equal-2.0.1" + sources."fast-fifo-1.3.2" sources."fast-glob-3.3.2" sources."fast-memoize-2.5.2" sources."fast-safe-stringify-2.1.1" - sources."fastq-1.15.0" + sources."fastq-1.16.0" + sources."fd-slicer-1.1.0" + sources."fetch-blob-3.2.0" + sources."fflate-0.8.1" sources."fill-range-7.0.1" sources."find-up-5.0.0" + sources."flatted-3.2.9" sources."for-each-0.3.3" - sources."fs-extra-10.1.0" + sources."foreground-child-3.1.1" + sources."form-data-4.0.0" + sources."form-data-encoder-2.1.4" + sources."formdata-polyfill-4.0.10" + sources."fs-constants-1.0.0" + (sources."fs-extra-11.2.0" // { + dependencies = [ + sources."jsonfile-6.1.0" + sources."universalify-2.0.1" + ]; + }) + (sources."fs-minipass-2.1.0" // { + dependencies = [ + sources."minipass-3.3.6" + ]; + }) + sources."fs.realpath-1.0.0" sources."fsevents-2.3.3" + (sources."fstream-1.0.12" // { + dependencies = [ + sources."mkdirp-0.5.6" + sources."rimraf-2.7.1" + ]; + }) sources."function-bind-1.1.2" sources."function.prototype.name-1.1.6" sources."functions-have-names-1.2.3" + (sources."gauge-3.0.2" // { + dependencies = [ + sources."signal-exit-3.0.7" + ]; + }) + (sources."geckodriver-4.3.0" // { + dependencies = [ + sources."data-uri-to-buffer-4.0.1" + sources."isexe-3.1.1" + sources."node-fetch-3.3.2" + sources."which-4.0.0" + ]; + }) sources."get-caller-file-2.0.5" + sources."get-func-name-2.0.2" sources."get-intrinsic-1.2.2" - sources."get-stream-6.0.1" + sources."get-port-7.0.0" + sources."get-stream-8.0.1" sources."get-symbol-description-1.0.0" + (sources."get-uri-6.0.2" // { + dependencies = [ + sources."fs-extra-8.1.0" + sources."universalify-0.1.2" + ]; + }) + (sources."glob-7.2.3" // { + dependencies = [ + sources."minimatch-3.1.2" + ]; + }) sources."glob-parent-5.1.2" sources."globalthis-1.0.3" sources."globby-11.1.0" sources."gopd-1.0.1" + (sources."got-12.6.1" // { + dependencies = [ + sources."decompress-response-6.0.0" + sources."get-stream-6.0.1" + sources."mimic-response-3.1.0" + ]; + }) sources."graceful-fs-4.2.11" + sources."grapheme-splitter-1.0.4" + (sources."happy-dom-12.10.3" // { + dependencies = [ + sources."webidl-conversions-7.0.0" + ]; + }) sources."has-bigints-1.0.2" sources."has-flag-4.0.0" sources."has-property-descriptors-1.0.1" sources."has-proto-1.0.1" sources."has-symbols-1.0.3" sources."has-tostringtag-1.0.0" + sources."has-unicode-2.0.1" sources."hasown-2.0.0" + (sources."html-encoding-sniffer-4.0.0" // { + dependencies = [ + sources."whatwg-encoding-3.1.1" + ]; + }) + sources."http-cache-semantics-4.1.1" + sources."http-proxy-agent-7.0.0" sources."http2-client-1.3.5" - sources."human-signals-2.1.0" + sources."http2-wrapper-2.2.1" + sources."https-proxy-agent-7.0.2" + sources."human-signals-5.0.0" sources."iconv-lite-0.6.3" + sources."ieee754-1.2.1" sources."ignore-5.3.0" + sources."image-size-0.5.5" sources."immer-9.0.21" + sources."immutable-4.3.4" + sources."import-meta-resolve-4.0.0" + sources."inflight-1.0.6" + sources."inherits-2.0.4" sources."internal-slot-1.0.6" + sources."ip-1.1.8" sources."is-array-buffer-3.0.2" sources."is-bigint-1.0.4" sources."is-binary-path-2.1.0" sources."is-boolean-object-1.1.2" sources."is-callable-1.2.7" sources."is-date-object-1.0.5" + sources."is-docker-2.2.1" sources."is-extglob-2.1.1" sources."is-fullwidth-code-point-3.0.0" sources."is-glob-4.0.3" sources."is-negative-zero-2.0.2" sources."is-number-7.0.0" sources."is-number-object-1.0.7" + sources."is-plain-obj-4.1.0" + sources."is-potential-custom-element-name-1.0.1" sources."is-regex-1.1.4" sources."is-shared-array-buffer-1.0.2" - sources."is-stream-2.0.1" + sources."is-stream-3.0.0" sources."is-string-1.0.7" sources."is-symbol-1.0.4" sources."is-typed-array-1.1.12" sources."is-weakref-1.0.2" + sources."is-what-3.14.1" + sources."is-wsl-2.2.0" sources."isarray-2.0.5" sources."isexe-2.0.0" + sources."jackspeak-2.3.6" sources."js-yaml-3.14.1" + (sources."jsdom-23.2.0" // { + dependencies = [ + sources."tr46-5.0.0" + sources."webidl-conversions-7.0.0" + sources."whatwg-encoding-3.1.1" + sources."whatwg-mimetype-4.0.0" + sources."whatwg-url-14.0.0" + ]; + }) sources."jsep-1.3.8" + sources."json-buffer-3.0.1" sources."json-schema-traverse-1.0.0" sources."jsonc-parser-2.2.1" - sources."jsonfile-6.1.0" + sources."jsonfile-4.0.0" sources."jsonpath-plus-7.1.0" sources."jsonpointer-5.0.1" + sources."keyv-4.5.4" + sources."ky-0.33.3" + (sources."lazystream-1.0.1" // { + dependencies = [ + sources."isarray-1.0.0" + sources."readable-stream-2.3.8" + sources."safe-buffer-5.1.2" + sources."string_decoder-1.1.1" + ]; + }) + sources."less-4.2.0" sources."leven-3.1.0" + (sources."lighthouse-logger-2.0.1" // { + dependencies = [ + sources."debug-2.6.9" + sources."ms-2.0.0" + ]; + }) + sources."lightningcss-1.22.1" + sources."listenercount-1.0.1" + sources."local-pkg-0.4.3" + sources."locate-app-2.2.5" sources."locate-path-6.0.0" sources."lodash-4.17.21" + sources."lodash.clonedeep-4.5.0" sources."lodash.get-4.4.2" sources."lodash.isempty-4.4.0" sources."lodash.omit-4.5.0" @@ -87537,65 +89421,189 @@ in sources."lodash.uniq-4.5.0" sources."lodash.uniqby-4.7.0" sources."lodash.uniqwith-4.5.0" + sources."lodash.zip-4.2.0" sources."loglevel-1.8.1" sources."loglevel-plugin-prefix-0.8.4" + sources."loupe-2.3.7" + sources."lowercase-keys-3.0.0" + sources."lru-cache-6.0.0" + sources."magic-string-0.30.5" + sources."make-dir-2.1.0" + sources."marky-1.2.5" + sources."mdn-data-2.0.30" sources."merge-stream-2.0.0" sources."merge2-1.4.1" sources."micromatch-4.0.5" - sources."mimic-fn-2.1.0" + sources."mime-1.6.0" + sources."mime-db-1.52.0" + sources."mime-types-2.1.35" + sources."mimic-fn-4.0.0" + sources."mimic-response-2.1.0" (sources."minimatch-6.2.0" // { dependencies = [ sources."brace-expansion-2.0.1" ]; }) + sources."minimist-1.2.8" + sources."minipass-5.0.0" + (sources."minizlib-2.1.2" // { + dependencies = [ + sources."minipass-3.3.6" + ]; + }) + sources."mitt-3.0.0" + sources."mkdirp-1.0.4" + sources."mkdirp-classic-0.5.3" + sources."mlly-1.4.2" + sources."mrmime-2.0.0" sources."ms-2.1.2" + sources."n12-1.8.8" + sources."nan-2.18.0" + sources."nanoid-3.3.7" + sources."needle-3.3.1" + sources."netmask-2.0.2" (sources."nimma-0.2.2" // { dependencies = [ sources."jsonpath-plus-6.0.1" ]; }) + sources."node-domexception-1.0.0" sources."node-fetch-2.7.0" sources."node-fetch-h2-2.3.0" + sources."node-gyp-build-4.8.0" sources."node-readfiles-0.2.0" + sources."nopt-5.0.0" sources."normalize-path-3.0.0" - sources."npm-run-path-4.0.1" + sources."normalize-url-8.0.0" + (sources."npm-run-path-5.2.0" // { + dependencies = [ + sources."path-key-4.0.0" + ]; + }) + sources."npmlog-5.0.1" sources."oas-kit-common-1.0.8" sources."oas-linter-3.2.2" sources."oas-resolver-2.5.6" sources."oas-schema-walker-1.1.5" sources."oas-validator-5.0.8" + sources."object-assign-4.1.1" sources."object-inspect-1.13.1" sources."object-keys-1.1.1" - sources."object.assign-4.1.4" - sources."onetime-5.1.2" + sources."object.assign-4.1.5" + sources."once-1.4.0" + sources."onetime-6.0.0" sources."openapi-types-12.1.3" (sources."openapi3-ts-3.2.0" // { dependencies = [ sources."yaml-2.3.4" ]; }) - sources."p-limit-3.1.0" - sources."p-locate-5.0.0" + sources."p-cancelable-3.0.0" + sources."p-limit-4.0.0" + (sources."p-locate-5.0.0" // { + dependencies = [ + sources."p-limit-3.1.0" + sources."yocto-queue-0.1.0" + ]; + }) + sources."pac-proxy-agent-7.0.1" + sources."pac-resolver-7.0.0" + sources."parse-node-version-1.0.1" + sources."parse5-7.1.2" sources."path-exists-4.0.0" + sources."path-is-absolute-1.0.1" sources."path-key-3.1.1" + (sources."path-scurry-1.10.1" // { + dependencies = [ + sources."lru-cache-10.1.0" + ]; + }) sources."path-type-4.0.0" + sources."pathe-1.1.1" + sources."pathval-1.1.1" + sources."pend-1.2.0" + sources."picocolors-1.0.0" sources."picomatch-2.3.1" + sources."pify-4.0.1" + (sources."pkg-types-1.0.3" // { + dependencies = [ + sources."jsonc-parser-3.2.0" + ]; + }) + sources."playwright-1.40.1" + sources."playwright-core-1.40.1" sources."pony-cause-1.1.1" + sources."postcss-8.4.33" + (sources."pretty-format-29.7.0" // { + dependencies = [ + sources."ansi-styles-5.2.0" + ]; + }) + sources."process-nextick-args-2.0.1" + sources."progress-2.0.3" + (sources."proxy-agent-6.3.1" // { + dependencies = [ + sources."lru-cache-7.18.3" + ]; + }) + sources."proxy-from-env-1.1.0" + sources."prr-1.0.1" + sources."psl-1.9.0" + sources."pump-3.0.0" sources."punycode-2.3.1" + (sources."puppeteer-core-20.9.0" // { + dependencies = [ + sources."@puppeteer/browsers-1.4.6" + sources."devtools-protocol-0.0.1147663" + sources."lru-cache-7.18.3" + sources."proxy-agent-6.3.0" + sources."ws-8.13.0" + sources."yargs-17.7.1" + ]; + }) + sources."query-selector-shadow-dom-1.0.1" + sources."querystringify-2.2.0" sources."queue-microtask-1.2.3" + sources."queue-tick-1.0.1" + sources."quick-lru-5.1.1" + sources."react-is-18.2.0" + sources."readable-stream-3.6.2" + (sources."readdir-glob-1.1.3" // { + dependencies = [ + sources."brace-expansion-2.0.1" + sources."minimatch-5.1.6" + ]; + }) sources."readdirp-3.6.0" sources."reftools-1.1.9" sources."regexp.prototype.flags-1.5.1" sources."require-directory-2.1.1" sources."require-from-string-2.0.2" + sources."requires-port-1.0.0" + sources."resolve-alpn-1.2.1" + sources."responselike-3.0.0" + sources."resq-1.11.0" sources."reusify-1.0.4" + sources."rgb2hex-0.2.5" + sources."rimraf-3.0.2" + sources."rollup-4.9.4" + sources."rrweb-cssom-0.6.0" sources."run-parallel-1.2.0" + sources."safaridriver-0.1.2" sources."safe-array-concat-1.0.1" + sources."safe-buffer-5.2.1" sources."safe-regex-test-1.0.0" sources."safe-stable-stringify-1.1.1" sources."safer-buffer-2.1.2" + sources."sass-1.69.7" + sources."sax-1.3.0" + sources."saxes-6.0.0" + sources."semver-5.7.2" + sources."serialize-error-11.0.3" + sources."set-blocking-2.0.0" sources."set-function-length-1.1.1" sources."set-function-name-2.0.1" + sources."setimmediate-1.0.5" sources."shebang-command-2.0.0" sources."shebang-regex-3.0.0" sources."should-13.2.3" @@ -87605,46 +89613,133 @@ in sources."should-type-adaptors-1.1.0" sources."should-util-1.0.1" sources."side-channel-1.0.4" - sources."signal-exit-3.0.7" + sources."siginfo-2.0.0" + sources."signal-exit-4.1.0" + sources."simple-concat-1.0.1" sources."simple-eval-1.0.0" + sources."simple-get-3.1.1" + sources."sirv-2.0.4" sources."slash-3.0.0" + sources."smart-buffer-4.2.0" + (sources."socks-2.7.1" // { + dependencies = [ + sources."ip-2.0.0" + ]; + }) + sources."socks-proxy-agent-8.0.2" + sources."source-map-0.6.1" + sources."source-map-js-1.0.2" + sources."source-map-support-0.5.21" + sources."split2-4.2.0" sources."sprintf-js-1.0.3" + sources."stackback-0.0.2" + sources."std-env-3.7.0" + sources."streamx-2.15.6" sources."string-argv-0.3.2" sources."string-width-4.2.3" + sources."string-width-cjs-4.2.3" sources."string.prototype.trim-1.2.8" sources."string.prototype.trimend-1.0.7" sources."string.prototype.trimstart-1.0.7" + sources."string_decoder-1.3.0" sources."strip-ansi-6.0.1" - sources."strip-final-newline-2.0.0" + sources."strip-ansi-cjs-6.0.1" + sources."strip-final-newline-3.0.0" + sources."strip-literal-1.3.0" + (sources."stylus-0.62.0" // { + dependencies = [ + sources."source-map-0.7.4" + ]; + }) + sources."sugarss-4.0.1" sources."supports-color-7.2.0" sources."swagger2openapi-7.0.8" + sources."symbol-tree-3.2.4" + sources."tar-6.2.0" + sources."tar-fs-3.0.4" + sources."tar-stream-3.1.6" + sources."terser-5.26.0" + sources."through-2.3.8" + sources."tinybench-2.5.1" + sources."tinypool-0.7.0" + sources."tinyspy-2.2.0" sources."to-regex-range-5.0.1" + sources."totalist-3.0.1" + sources."tough-cookie-4.1.3" sources."tr46-0.0.3" + sources."traverse-0.3.9" sources."tsconfck-2.1.2" sources."tslib-2.6.2" + sources."type-detect-4.0.8" + sources."type-fest-2.13.0" sources."typed-array-buffer-1.0.0" sources."typed-array-byte-length-1.0.0" sources."typed-array-byte-offset-1.0.0" sources."typed-array-length-1.0.4" - sources."typescript-5.3.2" + sources."typescript-5.3.3" + sources."ua-parser-js-1.0.37" + sources."ufo-1.3.2" sources."unbox-primitive-1.0.2" + sources."unbzip2-stream-1.4.3" sources."undici-types-5.26.5" - sources."universalify-2.0.1" + sources."universalify-0.2.0" + (sources."unzipper-0.10.14" // { + dependencies = [ + sources."isarray-1.0.0" + sources."readable-stream-2.3.8" + sources."safe-buffer-5.1.2" + sources."string_decoder-1.1.1" + ]; + }) sources."uri-js-4.4.1" sources."urijs-1.19.11" + sources."url-parse-1.5.10" + sources."userhome-1.0.0" + sources."utf-8-validate-6.0.3" + sources."util-deprecate-1.0.2" sources."utility-types-3.10.0" + sources."uuid-9.0.1" sources."validator-13.11.0" + sources."vite-5.0.11" + sources."vite-node-0.34.6" + sources."vitest-0.34.6" + sources."w3c-xmlserializer-5.0.0" + (sources."wait-port-1.1.0" // { + dependencies = [ + sources."commander-9.5.0" + ]; + }) + sources."web-streams-polyfill-3.3.2" + sources."webdriver-8.27.0" + (sources."webdriverio-8.27.0" // { + dependencies = [ + sources."brace-expansion-2.0.1" + sources."minimatch-9.0.3" + ]; + }) sources."webidl-conversions-3.0.1" + sources."whatwg-encoding-2.0.0" + sources."whatwg-mimetype-3.0.0" sources."whatwg-url-5.0.0" sources."which-2.0.2" sources."which-boxed-primitive-1.0.2" sources."which-typed-array-1.1.13" + sources."why-is-node-running-2.2.2" + sources."wide-align-1.1.5" sources."wrap-ansi-7.0.0" + sources."wrap-ansi-cjs-7.0.0" + sources."wrappy-1.0.2" + sources."ws-8.16.0" + sources."xml-name-validator-5.0.0" + sources."xmlchars-2.2.0" sources."y18n-5.0.8" + sources."yallist-4.0.0" sources."yaml-1.10.2" sources."yargs-17.7.2" sources."yargs-parser-21.1.1" - sources."yocto-queue-0.1.0" + sources."yauzl-2.10.0" + sources."yocto-queue-1.0.0" + sources."zip-stream-5.0.1" ]; buildInputs = globalBuildInputs; meta = { @@ -87659,13 +89754,13 @@ in parcel = nodeEnv.buildNodePackage { name = "parcel"; packageName = "parcel"; - version = "2.10.3"; + version = "2.11.0"; src = fetchurl { - url = "https://registry.npmjs.org/parcel/-/parcel-2.10.3.tgz"; - sha512 = "Ocx33N4ZVnotJTALhMZ0AqPIE9UN5uP6jjA+lYJ4FlEYuYYZsvOQXZQgeMa62pFj6jrOHWh7ho8uJhRdTNwVyg=="; + url = "https://registry.npmjs.org/parcel/-/parcel-2.11.0.tgz"; + sha512 = "H/RI1/DmuOkL8RuG/EpNPvtzrbF+7jA/R56ydEEm+lqFbYktKB4COR7JXdHkZXRgbSJyimrFB8d0r9+SaRnj0Q=="; }; dependencies = [ - (sources."@babel/code-frame-7.23.4" // { + (sources."@babel/code-frame-7.23.5" // { dependencies = [ sources."chalk-2.4.2" ]; @@ -87682,7 +89777,7 @@ in sources."@jridgewell/source-map-0.3.5" sources."@jridgewell/sourcemap-codec-1.4.15" sources."@jridgewell/trace-mapping-0.3.20" - sources."@lezer/common-1.1.1" + sources."@lezer/common-1.2.0" sources."@lezer/lr-1.3.14" sources."@lmdb/lmdb-darwin-arm64-2.8.5" sources."@lmdb/lmdb-darwin-x64-2.8.5" @@ -87691,73 +89786,73 @@ in sources."@lmdb/lmdb-linux-x64-2.8.5" sources."@lmdb/lmdb-win32-x64-2.8.5" sources."@mischnic/json-sourcemap-0.1.1" - sources."@parcel/bundler-default-2.10.3" - sources."@parcel/cache-2.10.3" - sources."@parcel/codeframe-2.10.3" - sources."@parcel/compressor-raw-2.10.3" - sources."@parcel/config-default-2.10.3" - sources."@parcel/core-2.10.3" - sources."@parcel/diagnostic-2.10.3" - sources."@parcel/events-2.10.3" - sources."@parcel/fs-2.10.3" - sources."@parcel/graph-3.0.3" - sources."@parcel/logger-2.10.3" - sources."@parcel/markdown-ansi-2.10.3" - sources."@parcel/namer-default-2.10.3" - sources."@parcel/node-resolver-core-3.1.3" - sources."@parcel/optimizer-css-2.10.3" - sources."@parcel/optimizer-htmlnano-2.10.3" - sources."@parcel/optimizer-image-2.10.3" - sources."@parcel/optimizer-svgo-2.10.3" - sources."@parcel/optimizer-swc-2.10.3" - sources."@parcel/package-manager-2.10.3" - sources."@parcel/packager-css-2.10.3" - sources."@parcel/packager-html-2.10.3" - sources."@parcel/packager-js-2.10.3" - sources."@parcel/packager-raw-2.10.3" - sources."@parcel/packager-svg-2.10.3" - sources."@parcel/packager-wasm-2.10.3" - sources."@parcel/plugin-2.10.3" - sources."@parcel/profiler-2.10.3" - sources."@parcel/reporter-cli-2.10.3" - sources."@parcel/reporter-dev-server-2.10.3" - sources."@parcel/reporter-tracer-2.10.3" - sources."@parcel/resolver-default-2.10.3" - sources."@parcel/runtime-browser-hmr-2.10.3" - sources."@parcel/runtime-js-2.10.3" - sources."@parcel/runtime-react-refresh-2.10.3" - sources."@parcel/runtime-service-worker-2.10.3" - sources."@parcel/rust-2.10.3" + sources."@parcel/bundler-default-2.11.0" + sources."@parcel/cache-2.11.0" + sources."@parcel/codeframe-2.11.0" + sources."@parcel/compressor-raw-2.11.0" + sources."@parcel/config-default-2.11.0" + sources."@parcel/core-2.11.0" + sources."@parcel/diagnostic-2.11.0" + sources."@parcel/events-2.11.0" + sources."@parcel/fs-2.11.0" + sources."@parcel/graph-3.1.0" + sources."@parcel/logger-2.11.0" + sources."@parcel/markdown-ansi-2.11.0" + sources."@parcel/namer-default-2.11.0" + sources."@parcel/node-resolver-core-3.2.0" + sources."@parcel/optimizer-css-2.11.0" + sources."@parcel/optimizer-htmlnano-2.11.0" + sources."@parcel/optimizer-image-2.11.0" + sources."@parcel/optimizer-svgo-2.11.0" + sources."@parcel/optimizer-swc-2.11.0" + sources."@parcel/package-manager-2.11.0" + sources."@parcel/packager-css-2.11.0" + sources."@parcel/packager-html-2.11.0" + sources."@parcel/packager-js-2.11.0" + sources."@parcel/packager-raw-2.11.0" + sources."@parcel/packager-svg-2.11.0" + sources."@parcel/packager-wasm-2.11.0" + sources."@parcel/plugin-2.11.0" + sources."@parcel/profiler-2.11.0" + sources."@parcel/reporter-cli-2.11.0" + sources."@parcel/reporter-dev-server-2.11.0" + sources."@parcel/reporter-tracer-2.11.0" + sources."@parcel/resolver-default-2.11.0" + sources."@parcel/runtime-browser-hmr-2.11.0" + sources."@parcel/runtime-js-2.11.0" + sources."@parcel/runtime-react-refresh-2.11.0" + sources."@parcel/runtime-service-worker-2.11.0" + sources."@parcel/rust-2.11.0" (sources."@parcel/source-map-2.1.1" // { dependencies = [ sources."detect-libc-1.0.3" ]; }) - sources."@parcel/transformer-babel-2.10.3" - sources."@parcel/transformer-css-2.10.3" - (sources."@parcel/transformer-html-2.10.3" // { + sources."@parcel/transformer-babel-2.11.0" + sources."@parcel/transformer-css-2.11.0" + (sources."@parcel/transformer-html-2.11.0" // { dependencies = [ sources."posthtml-parser-0.10.2" ]; }) - sources."@parcel/transformer-image-2.10.3" - sources."@parcel/transformer-js-2.10.3" - sources."@parcel/transformer-json-2.10.3" - sources."@parcel/transformer-postcss-2.10.3" - (sources."@parcel/transformer-posthtml-2.10.3" // { + sources."@parcel/transformer-image-2.11.0" + sources."@parcel/transformer-js-2.11.0" + sources."@parcel/transformer-json-2.11.0" + sources."@parcel/transformer-postcss-2.11.0" + (sources."@parcel/transformer-posthtml-2.11.0" // { dependencies = [ sources."posthtml-parser-0.10.2" ]; }) - sources."@parcel/transformer-raw-2.10.3" - sources."@parcel/transformer-react-refresh-wrap-2.10.3" - (sources."@parcel/transformer-svg-2.10.3" // { + sources."@parcel/transformer-raw-2.11.0" + sources."@parcel/transformer-react-refresh-wrap-2.11.0" + (sources."@parcel/transformer-svg-2.11.0" // { dependencies = [ sources."posthtml-parser-0.10.2" ]; }) - sources."@parcel/types-2.10.3" - sources."@parcel/utils-2.10.3" + sources."@parcel/types-2.11.0" + sources."@parcel/utils-2.11.0" (sources."@parcel/watcher-2.3.0" // { dependencies = [ sources."detect-libc-1.0.3" @@ -87776,15 +89871,15 @@ in sources."@parcel/watcher-win32-arm64-2.3.0" sources."@parcel/watcher-win32-ia32-2.3.0" sources."@parcel/watcher-win32-x64-2.3.0" - sources."@parcel/workers-2.10.3" - sources."@swc/core-1.3.99" + sources."@parcel/workers-2.11.0" + sources."@swc/core-1.3.102" sources."@swc/counter-0.1.2" sources."@swc/helpers-0.5.3" sources."@swc/types-0.1.5" sources."@trysound/sax-0.2.0" sources."abab-2.0.6" sources."abortcontroller-polyfill-1.7.5" - sources."acorn-8.11.2" + sources."acorn-8.11.3" (sources."acorn-globals-4.3.4" // { dependencies = [ sources."acorn-6.4.2" @@ -87792,6 +89887,7 @@ in }) sources."acorn-walk-6.2.0" sources."ajv-6.12.6" + sources."ansi-regex-5.0.1" sources."ansi-styles-3.2.1" sources."argparse-2.0.1" sources."array-equal-1.0.2" @@ -87808,11 +89904,11 @@ in sources."brace-expansion-2.0.1" sources."braces-3.0.2" sources."browser-process-hrtime-1.0.0" - sources."browserslist-4.22.1" + sources."browserslist-4.22.2" sources."buffer-from-1.1.2" sources."callsites-3.1.0" sources."caniuse-api-3.0.0" - sources."caniuse-lite-1.0.30001563" + sources."caniuse-lite-1.0.30001576" sources."caseless-0.12.0" (sources."chalk-4.1.2" // { dependencies = [ @@ -87824,6 +89920,7 @@ in ]; }) sources."chrome-trace-event-1.0.3" + sources."cli-progress-3.12.0" sources."clone-2.1.2" sources."color-convert-1.9.3" sources."color-name-1.1.3" @@ -87833,14 +89930,14 @@ in sources."concat-map-0.0.1" sources."core-util-is-1.0.2" sources."cosmiconfig-8.3.6" - sources."css-declaration-sorter-6.4.1" + sources."css-declaration-sorter-7.1.1" sources."css-select-5.1.0" sources."css-tree-2.3.1" sources."css-what-6.1.0" sources."cssesc-3.0.0" - sources."cssnano-6.0.1" - sources."cssnano-preset-default-6.0.1" - sources."cssnano-utils-4.0.0" + sources."cssnano-6.0.3" + sources."cssnano-preset-default-6.0.3" + sources."cssnano-utils-4.0.1" (sources."csso-5.0.5" // { dependencies = [ sources."css-tree-2.2.1" @@ -87862,7 +89959,8 @@ in sources."dotenv-7.0.0" sources."dotenv-expand-5.1.0" sources."ecc-jsbn-0.1.2" - sources."electron-to-chromium-1.4.589" + sources."electron-to-chromium-1.4.623" + sources."emoji-regex-8.0.0" sources."entities-4.5.0" sources."error-ex-1.3.2" sources."escalade-3.1.1" @@ -87883,7 +89981,7 @@ in sources."get-port-4.2.0" sources."getpass-0.1.7" sources."glob-8.1.0" - sources."globals-13.23.0" + sources."globals-13.24.0" sources."har-schema-2.0.0" sources."har-validator-5.1.5" sources."has-flag-3.0.0" @@ -87891,7 +89989,7 @@ in sources."html-tags-1.2.0" (sources."htmlnano-2.1.0" // { dependencies = [ - sources."svgo-3.0.4" + sources."svgo-3.2.0" ]; }) (sources."htmlparser2-7.2.0" // { @@ -87915,6 +90013,7 @@ in sources."is-absolute-url-3.0.3" sources."is-arrayish-0.2.1" sources."is-extglob-2.1.1" + sources."is-fullwidth-code-point-3.0.0" sources."is-glob-4.0.3" sources."is-html-1.1.0" sources."is-json-2.0.1" @@ -87941,7 +90040,7 @@ in sources."detect-libc-1.0.3" ]; }) - sources."lilconfig-2.1.0" + sources."lilconfig-3.0.0" sources."lines-and-columns-1.2.4" sources."lmdb-2.8.5" sources."lodash-4.17.21" @@ -87954,18 +90053,18 @@ in sources."mime-db-1.52.0" sources."mime-types-2.1.35" sources."minimatch-5.1.6" - sources."msgpackr-1.9.9" + sources."msgpackr-1.10.1" sources."nanoid-3.3.7" sources."node-addon-api-6.1.0" sources."node-gyp-build-optional-packages-5.1.1" - sources."node-releases-2.0.13" + sources."node-releases-2.0.14" sources."nth-check-2.1.1" sources."nullthrows-1.1.1" sources."nwsapi-2.2.7" sources."oauth-sign-0.9.0" sources."once-1.4.0" sources."optionator-0.8.3" - sources."ordered-binary-1.4.1" + sources."ordered-binary-1.5.1" sources."parent-module-1.0.1" sources."parse-json-5.2.0" sources."parse5-5.1.0" @@ -87975,39 +90074,39 @@ in sources."picocolors-1.0.0" sources."picomatch-2.3.1" sources."pn-1.1.0" - sources."postcss-8.4.31" + sources."postcss-8.4.33" sources."postcss-calc-9.0.1" - sources."postcss-colormin-6.0.0" - sources."postcss-convert-values-6.0.0" - sources."postcss-discard-comments-6.0.0" - sources."postcss-discard-duplicates-6.0.0" - sources."postcss-discard-empty-6.0.0" - sources."postcss-discard-overridden-6.0.0" - sources."postcss-merge-longhand-6.0.0" - sources."postcss-merge-rules-6.0.1" - sources."postcss-minify-font-values-6.0.0" - sources."postcss-minify-gradients-6.0.0" - sources."postcss-minify-params-6.0.0" - sources."postcss-minify-selectors-6.0.0" - sources."postcss-normalize-charset-6.0.0" - sources."postcss-normalize-display-values-6.0.0" - sources."postcss-normalize-positions-6.0.0" - sources."postcss-normalize-repeat-style-6.0.0" - sources."postcss-normalize-string-6.0.0" - sources."postcss-normalize-timing-functions-6.0.0" - sources."postcss-normalize-unicode-6.0.0" - sources."postcss-normalize-url-6.0.0" - sources."postcss-normalize-whitespace-6.0.0" - sources."postcss-ordered-values-6.0.0" - sources."postcss-reduce-initial-6.0.0" - sources."postcss-reduce-transforms-6.0.0" - sources."postcss-selector-parser-6.0.13" - (sources."postcss-svgo-6.0.0" // { - dependencies = [ - sources."svgo-3.0.4" - ]; - }) - sources."postcss-unique-selectors-6.0.0" + sources."postcss-colormin-6.0.2" + sources."postcss-convert-values-6.0.2" + sources."postcss-discard-comments-6.0.1" + sources."postcss-discard-duplicates-6.0.1" + sources."postcss-discard-empty-6.0.1" + sources."postcss-discard-overridden-6.0.1" + sources."postcss-merge-longhand-6.0.2" + sources."postcss-merge-rules-6.0.3" + sources."postcss-minify-font-values-6.0.1" + sources."postcss-minify-gradients-6.0.1" + sources."postcss-minify-params-6.0.2" + sources."postcss-minify-selectors-6.0.2" + sources."postcss-normalize-charset-6.0.1" + sources."postcss-normalize-display-values-6.0.1" + sources."postcss-normalize-positions-6.0.1" + sources."postcss-normalize-repeat-style-6.0.1" + sources."postcss-normalize-string-6.0.1" + sources."postcss-normalize-timing-functions-6.0.1" + sources."postcss-normalize-unicode-6.0.2" + sources."postcss-normalize-url-6.0.1" + sources."postcss-normalize-whitespace-6.0.1" + sources."postcss-ordered-values-6.0.1" + sources."postcss-reduce-initial-6.0.2" + sources."postcss-reduce-transforms-6.0.1" + sources."postcss-selector-parser-6.0.15" + (sources."postcss-svgo-6.0.2" // { + dependencies = [ + sources."svgo-3.2.0" + ]; + }) + sources."postcss-unique-selectors-6.0.2" sources."postcss-value-parser-4.2.0" sources."posthtml-0.16.6" sources."posthtml-parser-0.11.0" @@ -88040,7 +90139,9 @@ in sources."sshpk-1.18.0" sources."stable-0.1.8" sources."stealthy-require-1.1.1" - sources."stylehacks-6.0.0" + sources."string-width-4.2.3" + sources."strip-ansi-6.0.1" + sources."stylehacks-6.0.2" sources."supports-color-5.5.0" (sources."svgo-2.8.0" // { dependencies = [ @@ -88056,7 +90157,7 @@ in }) sources."symbol-tree-3.2.4" sources."term-size-2.2.1" - (sources."terser-5.24.0" // { + (sources."terser-5.26.0" // { dependencies = [ sources."commander-2.20.3" ]; @@ -88070,7 +90171,7 @@ in sources."tweetnacl-0.14.5" sources."type-check-0.3.2" sources."type-fest-0.20.2" - sources."typescript-5.3.2" + sources."typescript-5.3.3" (sources."uncss-0.17.3" // { dependencies = [ sources."brace-expansion-1.1.11" @@ -88277,7 +90378,7 @@ in sources."minimatch-3.1.2" sources."minimist-1.2.8" sources."mkdirp-0.5.6" - sources."moment-2.29.4" + sources."moment-2.30.1" sources."ms-2.0.0" sources."msgpack5-3.6.1" sources."mv-2.1.1" @@ -88288,7 +90389,7 @@ in sources."oauth-sign-0.9.0" sources."object-inspect-1.13.1" sources."object-keys-1.1.1" - sources."object.assign-4.1.4" + sources."object.assign-4.1.5" sources."on-finished-2.4.1" sources."on-headers-1.0.2" sources."once-1.4.0" @@ -88520,7 +90621,7 @@ in sources."base64-js-0.0.8" sources."bencode-2.0.3" sources."bep53-range-1.1.1" - sources."big-integer-1.6.51" + sources."big-integer-1.6.52" sources."bitfield-0.1.0" (sources."bittorrent-dht-6.4.2" // { dependencies = [ @@ -89056,7 +91157,7 @@ in ]; }) sources."negotiator-0.6.3" - sources."node-gyp-build-4.7.0" + sources."node-gyp-build-4.8.0" sources."normalize-path-3.0.0" sources."oauth-sign-0.9.0" sources."object-inspect-1.13.1" @@ -89228,21 +91329,21 @@ in src = ../../tools/networking/pgrok/build-deps; dependencies = [ sources."@aashutoshrathi/word-wrap-1.2.6" - sources."@adobe/css-tools-4.3.1" + sources."@adobe/css-tools-4.3.2" sources."@alloc/quick-lru-5.2.0" sources."@ampproject/remapping-2.2.1" - sources."@babel/code-frame-7.23.4" - sources."@babel/compat-data-7.23.3" - (sources."@babel/core-7.23.3" // { + sources."@babel/code-frame-7.23.5" + sources."@babel/compat-data-7.23.5" + (sources."@babel/core-7.23.7" // { dependencies = [ - sources."@babel/generator-7.23.4" - sources."@babel/traverse-7.23.4" - sources."@babel/types-7.23.4" + sources."@babel/generator-7.23.6" + sources."@babel/traverse-7.23.7" + sources."@babel/types-7.23.6" sources."semver-6.3.1" ]; }) sources."@babel/generator-7.17.7" - (sources."@babel/helper-compilation-targets-7.22.15" // { + (sources."@babel/helper-compilation-targets-7.23.6" // { dependencies = [ sources."lru-cache-5.1.1" sources."semver-6.3.1" @@ -89252,54 +91353,54 @@ in sources."@babel/helper-environment-visitor-7.22.20" (sources."@babel/helper-function-name-7.23.0" // { dependencies = [ - sources."@babel/types-7.23.4" + sources."@babel/types-7.23.6" ]; }) (sources."@babel/helper-hoist-variables-7.22.5" // { dependencies = [ - sources."@babel/types-7.23.4" + sources."@babel/types-7.23.6" ]; }) (sources."@babel/helper-module-imports-7.22.15" // { dependencies = [ - sources."@babel/types-7.23.4" + sources."@babel/types-7.23.6" ]; }) sources."@babel/helper-module-transforms-7.23.3" sources."@babel/helper-plugin-utils-7.22.5" (sources."@babel/helper-simple-access-7.22.5" // { dependencies = [ - sources."@babel/types-7.23.4" + sources."@babel/types-7.23.6" ]; }) (sources."@babel/helper-split-export-declaration-7.22.6" // { dependencies = [ - sources."@babel/types-7.23.4" + sources."@babel/types-7.23.6" ]; }) sources."@babel/helper-string-parser-7.23.4" sources."@babel/helper-validator-identifier-7.22.20" - sources."@babel/helper-validator-option-7.22.15" - (sources."@babel/helpers-7.23.4" // { + sources."@babel/helper-validator-option-7.23.5" + (sources."@babel/helpers-7.23.7" // { dependencies = [ - sources."@babel/generator-7.23.4" - sources."@babel/traverse-7.23.4" - sources."@babel/types-7.23.4" + sources."@babel/generator-7.23.6" + sources."@babel/traverse-7.23.7" + sources."@babel/types-7.23.6" ]; }) sources."@babel/highlight-7.23.4" - sources."@babel/parser-7.23.4" + sources."@babel/parser-7.23.6" sources."@babel/plugin-transform-react-jsx-self-7.23.3" sources."@babel/plugin-transform-react-jsx-source-7.23.3" (sources."@babel/template-7.22.15" // { dependencies = [ - sources."@babel/types-7.23.4" + sources."@babel/types-7.23.6" ]; }) (sources."@babel/traverse-7.23.2" // { dependencies = [ - sources."@babel/generator-7.23.4" - sources."@babel/types-7.23.4" + sources."@babel/generator-7.23.6" + sources."@babel/types-7.23.6" ]; }) sources."@babel/types-7.17.0" @@ -89332,9 +91433,9 @@ in sources."@esbuild/win32-x64-0.18.20" sources."@eslint-community/eslint-utils-4.4.0" sources."@eslint-community/regexpp-4.10.0" - (sources."@eslint/eslintrc-2.1.3" // { + (sources."@eslint/eslintrc-2.1.4" // { dependencies = [ - sources."globals-13.23.0" + sources."globals-13.24.0" ]; }) sources."@eslint/js-8.44.0" @@ -89343,6 +91444,12 @@ in sources."@humanwhocodes/config-array-0.11.13" sources."@humanwhocodes/module-importer-1.0.1" sources."@humanwhocodes/object-schema-2.0.1" + (sources."@isaacs/cliui-8.0.2" // { + dependencies = [ + sources."ansi-regex-6.0.1" + sources."strip-ansi-7.1.0" + ]; + }) sources."@jridgewell/gen-mapping-0.3.3" sources."@jridgewell/resolve-uri-3.1.1" sources."@jridgewell/set-array-1.1.2" @@ -89353,11 +91460,11 @@ in sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" sources."@remix-run/router-1.8.0" - sources."@swc/core-1.3.99" + sources."@swc/core-1.3.102" sources."@swc/counter-0.1.2" sources."@swc/helpers-0.5.3" sources."@swc/types-0.1.5" - sources."@swc/wasm-1.3.99" + sources."@swc/wasm-1.3.102" sources."@tailwindcss/forms-0.5.7" sources."@trivago/prettier-plugin-sort-imports-4.2.1" sources."@tsconfig/node10-1.0.9" @@ -89369,9 +91476,9 @@ in sources."@types/node-20.5.9" sources."@types/normalize-package-data-2.4.4" sources."@types/prop-types-15.7.11" - sources."@types/react-18.2.38" - sources."@types/react-dom-18.2.16" - sources."@types/scheduler-0.16.7" + sources."@types/react-18.2.47" + sources."@types/react-dom-18.2.18" + sources."@types/scheduler-0.16.8" sources."@types/semver-7.5.6" sources."@typescript-eslint/eslint-plugin-6.0.0" sources."@typescript-eslint/parser-6.0.0" @@ -89382,15 +91489,14 @@ in sources."@typescript-eslint/utils-6.0.0" sources."@typescript-eslint/visitor-keys-6.0.0" sources."@vitejs/plugin-react-4.0.4" - sources."@vue/compiler-core-3.3.8" - sources."@vue/compiler-dom-3.3.8" - sources."@vue/compiler-sfc-3.3.8" - sources."@vue/compiler-ssr-3.3.8" - sources."@vue/reactivity-transform-3.3.8" - sources."@vue/shared-3.3.8" - sources."acorn-8.11.2" + sources."@vue/compiler-core-3.4.5" + sources."@vue/compiler-dom-3.4.5" + sources."@vue/compiler-sfc-3.4.5" + sources."@vue/compiler-ssr-3.4.5" + sources."@vue/shared-3.4.5" + sources."acorn-8.11.3" sources."acorn-jsx-5.3.2" - sources."acorn-walk-8.3.0" + sources."acorn-walk-8.3.1" sources."ajv-6.12.6" sources."ansi-regex-5.0.1" sources."ansi-styles-3.2.1" @@ -89416,13 +91522,13 @@ in sources."binary-extensions-2.2.0" sources."brace-expansion-1.1.11" sources."braces-3.0.2" - sources."browserslist-4.22.1" + sources."browserslist-4.22.2" sources."buffer-from-1.1.2" sources."builtin-modules-3.3.0" sources."call-bind-1.0.5" sources."callsites-3.1.0" sources."camelcase-css-2.0.1" - sources."caniuse-lite-1.0.30001563" + sources."caniuse-lite-1.0.30001576" sources."chalk-2.4.2" sources."chokidar-3.5.3" sources."ci-info-3.9.0" @@ -89458,7 +91564,7 @@ in sources."create-require-1.1.1" sources."cross-spawn-7.0.3" sources."cssesc-3.0.0" - sources."csstype-3.1.2" + sources."csstype-3.1.3" sources."debug-4.3.4" sources."deep-is-0.1.4" sources."define-data-property-1.1.1" @@ -89470,7 +91576,10 @@ in sources."dir-glob-3.0.1" sources."dlv-1.1.3" sources."doctrine-3.0.0" - sources."electron-to-chromium-1.4.589" + sources."eastasianwidth-0.2.0" + sources."electron-to-chromium-1.4.623" + sources."emoji-regex-9.2.2" + sources."entities-4.5.0" sources."errno-0.1.8" sources."error-ex-1.3.2" sources."es-abstract-1.22.3" @@ -89491,7 +91600,7 @@ in sources."eslint-scope-7.2.2" sources."estraverse-5.3.0" sources."glob-parent-6.0.2" - sources."globals-13.23.0" + sources."globals-13.24.0" sources."has-flag-4.0.0" sources."supports-color-7.2.0" ]; @@ -89522,7 +91631,7 @@ in ]; }) sources."eslint-plugin-react-hooks-4.6.0" - sources."eslint-plugin-react-refresh-0.4.4" + sources."eslint-plugin-react-refresh-0.4.5" (sources."eslint-plugin-unicorn-48.0.1" // { dependencies = [ sources."jsesc-3.0.2" @@ -89548,14 +91657,15 @@ in sources."fast-glob-3.3.2" sources."fast-json-stable-stringify-2.1.0" sources."fast-levenshtein-2.0.6" - sources."fastq-1.15.0" + sources."fastq-1.16.0" sources."file-entry-cache-6.0.1" sources."fill-range-7.0.1" sources."find-up-5.0.0" sources."flat-cache-3.2.0" sources."flatted-3.2.9" - sources."follow-redirects-1.15.3" + sources."follow-redirects-1.15.4" sources."for-each-0.3.3" + sources."foreground-child-3.1.1" sources."form-data-4.0.0" sources."fraction.js-4.3.7" sources."fs.realpath-1.0.0" @@ -89606,6 +91716,7 @@ in sources."is-date-object-1.0.5" sources."is-extglob-2.1.1" sources."is-finalizationregistry-1.0.2" + sources."is-fullwidth-code-point-3.0.0" sources."is-generator-function-1.0.10" sources."is-glob-4.0.3" sources."is-map-2.0.2" @@ -89626,6 +91737,7 @@ in sources."isarray-2.0.5" sources."isexe-2.0.0" sources."iterator.prototype-1.1.2" + sources."jackspeak-2.3.6" sources."javascript-natural-sort-0.7.1" sources."jiti-1.21.0" sources."js-tokens-4.0.0" @@ -89669,18 +91781,15 @@ in sources."mini-svg-data-uri-1.4.4" sources."minimatch-3.1.2" sources."minimist-1.2.8" + sources."minipass-7.0.4" sources."mkdirp-0.5.6" sources."ms-2.1.2" sources."mz-2.7.0" sources."nanoid-3.3.7" sources."natural-compare-1.4.0" sources."natural-compare-lite-1.4.0" - (sources."needle-3.2.0" // { - dependencies = [ - sources."debug-3.2.7" - ]; - }) - sources."node-releases-2.0.13" + sources."needle-3.3.1" + sources."node-releases-2.0.14" (sources."normalize-package-data-2.5.0" // { dependencies = [ sources."semver-5.7.2" @@ -89692,7 +91801,7 @@ in sources."object-hash-3.0.0" sources."object-inspect-1.13.1" sources."object-keys-1.1.1" - sources."object.assign-4.1.4" + sources."object.assign-4.1.5" sources."object.entries-1.1.7" sources."object.fromentries-2.0.7" sources."object.groupby-1.0.1" @@ -89710,6 +91819,11 @@ in sources."path-is-absolute-1.0.1" sources."path-key-3.1.1" sources."path-parse-1.0.7" + (sources."path-scurry-1.10.1" // { + dependencies = [ + sources."lru-cache-10.1.0" + ]; + }) sources."path-type-4.0.0" sources."picocolors-1.0.0" sources."picomatch-2.3.1" @@ -89721,7 +91835,7 @@ in sources."debug-3.2.7" ]; }) - sources."postcss-8.4.31" + sources."postcss-8.4.33" sources."postcss-import-15.1.0" sources."postcss-js-4.0.1" (sources."postcss-load-config-4.0.2" // { @@ -89730,7 +91844,7 @@ in ]; }) sources."postcss-nested-6.0.1" - sources."postcss-selector-parser-6.0.13" + sources."postcss-selector-parser-6.0.15" sources."postcss-value-parser-4.2.0" sources."prelude-ls-1.2.1" sources."prettier-3.0.3" @@ -89778,7 +91892,7 @@ in sources."safe-array-concat-1.0.1" sources."safe-regex-test-1.0.0" sources."safer-buffer-2.1.2" - sources."sass-1.69.5" + sources."sass-1.69.7" sources."sax-1.3.0" sources."scheduler-0.23.0" sources."semver-7.5.4" @@ -89787,6 +91901,7 @@ in sources."shebang-command-2.0.0" sources."shebang-regex-3.0.0" sources."side-channel-1.0.4" + sources."signal-exit-4.1.0" sources."slash-3.0.0" sources."source-map-0.5.7" sources."source-map-js-1.0.2" @@ -89799,11 +91914,23 @@ in sources."spdx-exceptions-2.3.0" sources."spdx-expression-parse-3.0.1" sources."spdx-license-ids-3.0.16" + (sources."string-width-5.1.2" // { + dependencies = [ + sources."ansi-regex-6.0.1" + sources."strip-ansi-7.1.0" + ]; + }) + (sources."string-width-cjs-4.2.3" // { + dependencies = [ + sources."emoji-regex-8.0.0" + ]; + }) sources."string.prototype.matchall-4.0.10" sources."string.prototype.trim-1.2.8" sources."string.prototype.trimend-1.0.7" sources."string.prototype.trimstart-1.0.7" sources."strip-ansi-6.0.1" + sources."strip-ansi-cjs-6.0.1" sources."strip-bom-3.0.0" sources."strip-indent-3.0.0" sources."strip-json-comments-3.1.1" @@ -89812,20 +91939,22 @@ in sources."source-map-0.7.4" ]; }) - (sources."sucrase-3.34.0" // { + (sources."sucrase-3.35.0" // { dependencies = [ - sources."glob-7.1.6" + sources."brace-expansion-2.0.1" + sources."glob-10.3.10" + sources."minimatch-9.0.3" ]; }) sources."sugarss-4.0.1" sources."supports-color-5.5.0" sources."supports-preserve-symlinks-flag-1.0.0" - (sources."tailwindcss-3.3.5" // { + (sources."tailwindcss-3.3.7" // { dependencies = [ sources."glob-parent-6.0.2" ]; }) - (sources."terser-5.24.0" // { + (sources."terser-5.26.0" // { dependencies = [ sources."commander-2.20.3" ]; @@ -89837,12 +91966,12 @@ in sources."to-regex-range-5.0.1" sources."ts-api-utils-1.0.3" sources."ts-interface-checker-0.1.13" - (sources."ts-node-10.9.1" // { + (sources."ts-node-10.9.2" // { dependencies = [ sources."arg-4.1.3" ]; }) - (sources."tsconfig-paths-3.14.2" // { + (sources."tsconfig-paths-3.15.0" // { dependencies = [ sources."json5-1.0.2" ]; @@ -89861,7 +91990,7 @@ in sources."util-deprecate-1.0.2" sources."v8-compile-cache-lib-3.0.1" sources."validate-npm-package-license-3.0.4" - sources."vite-4.4.11" + sources."vite-4.4.12" sources."vite-code-inspector-plugin-0.1.9" sources."webpack-code-inspector-plugin-0.1.9" sources."which-2.0.2" @@ -89869,233 +91998,30 @@ in sources."which-builtin-type-1.1.3" sources."which-collection-1.0.1" sources."which-typed-array-1.1.13" - sources."wrappy-1.0.2" - sources."yallist-4.0.0" - sources."yaml-2.3.4" - sources."yn-3.1.1" - sources."yocto-queue-0.1.0" - ]; - buildInputs = globalBuildInputs; - meta = { - }; - production = true; - bypassCache = true; - reconstructLock = true; - }; - pm2 = nodeEnv.buildNodePackage { - name = "pm2"; - packageName = "pm2"; - version = "5.3.0"; - src = fetchurl { - url = "https://registry.npmjs.org/pm2/-/pm2-5.3.0.tgz"; - sha512 = "xscmQiAAf6ArVmKhjKTeeN8+Td7ZKnuZFFPw1DGkdFPR/0Iyx+m+1+OpCdf9+HQopX3VPc9/wqPQHqVOfHum9w=="; - }; - dependencies = [ - (sources."@opencensus/core-0.0.9" // { - dependencies = [ - sources."semver-5.7.2" - ]; - }) - (sources."@opencensus/propagation-b3-0.0.8" // { - dependencies = [ - sources."@opencensus/core-0.0.8" - sources."semver-5.7.2" - ]; - }) - (sources."@pm2/agent-2.0.3" // { - dependencies = [ - sources."dayjs-1.8.36" - ]; - }) - (sources."@pm2/io-5.0.2" // { - dependencies = [ - sources."async-2.6.4" - sources."eventemitter2-6.4.9" - sources."tslib-1.9.3" - ]; - }) - (sources."@pm2/js-api-0.6.7" // { - dependencies = [ - sources."async-2.6.4" - sources."eventemitter2-6.4.9" - ]; - }) - sources."@pm2/pm2-version-check-1.0.4" - sources."@tootallnate/quickjs-emscripten-0.23.0" - sources."agent-base-7.1.0" - sources."amp-0.3.1" - sources."amp-message-0.1.2" - sources."ansi-colors-4.1.3" - sources."ansi-styles-4.3.0" - sources."anymatch-3.1.3" - (sources."argparse-1.0.10" // { - dependencies = [ - sources."sprintf-js-1.0.3" - ]; - }) - sources."ast-types-0.13.4" - sources."async-3.2.5" - (sources."async-listener-0.6.10" // { - dependencies = [ - sources."semver-5.7.2" - ]; - }) - sources."axios-0.21.4" - sources."balanced-match-1.0.2" - sources."basic-ftp-5.0.3" - sources."binary-extensions-2.2.0" - sources."blessed-0.1.81" - sources."bodec-0.1.0" - sources."brace-expansion-1.1.11" - sources."braces-3.0.2" - sources."buffer-from-1.1.2" - sources."bufferutil-4.0.8" - sources."chalk-3.0.0" - sources."charm-0.1.2" - sources."chokidar-3.5.3" - sources."cli-tableau-2.0.1" - sources."color-convert-2.0.1" - sources."color-name-1.1.4" - sources."commander-2.15.1" - sources."concat-map-0.0.1" - sources."continuation-local-storage-3.2.1" - sources."croner-4.1.97" - sources."culvert-0.1.2" - sources."data-uri-to-buffer-6.0.1" - sources."dayjs-1.11.10" - sources."debug-4.3.4" - sources."degenerator-5.0.1" - sources."emitter-listener-1.1.2" - sources."enquirer-2.3.6" - sources."escape-string-regexp-4.0.0" - sources."escodegen-2.1.0" - sources."esprima-4.0.1" - sources."estraverse-5.3.0" - sources."esutils-2.0.3" - sources."eventemitter2-5.0.1" - sources."fast-json-patch-3.1.1" - sources."fclone-1.0.11" - sources."fill-range-7.0.1" - sources."follow-redirects-1.15.3" - sources."fs-extra-8.1.0" - sources."fs.realpath-1.0.0" - sources."fsevents-2.3.3" - sources."function-bind-1.1.2" - sources."get-uri-6.0.2" - sources."git-node-fs-1.0.0" - sources."git-sha1-0.1.2" - sources."glob-7.2.3" - sources."glob-parent-5.1.2" - sources."graceful-fs-4.2.11" - sources."has-flag-4.0.0" - sources."hasown-2.0.0" - sources."http-proxy-agent-7.0.0" - sources."https-proxy-agent-7.0.2" - sources."iconv-lite-0.4.24" - sources."inflight-1.0.6" - sources."inherits-2.0.4" - sources."ini-1.3.8" - sources."ip-1.1.8" - sources."is-binary-path-2.1.0" - sources."is-core-module-2.13.1" - sources."is-extglob-2.1.1" - sources."is-glob-4.0.3" - sources."is-number-7.0.0" - sources."js-git-0.7.8" - sources."json-stringify-safe-5.0.1" - sources."jsonfile-4.0.0" - sources."lazy-1.0.11" - sources."lodash-4.17.21" - sources."log-driver-1.2.7" - sources."lru-cache-7.18.3" - sources."minimatch-3.1.2" - sources."mkdirp-1.0.4" - sources."module-details-from-path-1.0.3" - sources."ms-2.1.2" - sources."mute-stream-0.0.8" - (sources."needle-2.4.0" // { - dependencies = [ - sources."debug-3.2.7" - ]; - }) - sources."netmask-2.0.2" - sources."node-gyp-build-4.7.0" - sources."normalize-path-3.0.0" - (sources."nssocket-0.6.0" // { - dependencies = [ - sources."eventemitter2-0.4.14" - ]; - }) - sources."once-1.4.0" - sources."pac-proxy-agent-7.0.1" - sources."pac-resolver-7.0.0" - sources."pako-0.2.9" - sources."path-is-absolute-1.0.1" - sources."path-parse-1.0.7" - sources."picomatch-2.3.1" - sources."pidusage-3.0.2" - sources."pm2-axon-4.0.1" - sources."pm2-axon-rpc-0.7.1" - sources."pm2-deploy-1.0.2" - sources."pm2-multimeter-0.1.2" - (sources."pm2-sysmonit-1.2.8" // { - dependencies = [ - sources."pidusage-2.0.21" - ]; - }) - sources."promptly-2.2.0" - sources."proxy-agent-6.3.1" - sources."proxy-from-env-1.1.0" - sources."read-1.0.7" - sources."readdirp-3.6.0" - sources."require-in-the-middle-5.2.0" - sources."resolve-1.22.8" - sources."run-series-1.1.9" - sources."safe-buffer-5.2.1" - sources."safer-buffer-2.1.2" - sources."sax-1.3.0" - (sources."semver-7.5.4" // { - dependencies = [ - sources."lru-cache-6.0.0" - ]; - }) - sources."shimmer-1.2.1" - sources."signal-exit-3.0.7" - sources."smart-buffer-4.2.0" - (sources."socks-2.7.1" // { + (sources."wrap-ansi-8.1.0" // { dependencies = [ - sources."ip-2.0.0" + sources."ansi-regex-6.0.1" + sources."ansi-styles-6.2.1" + sources."strip-ansi-7.1.0" ]; }) - sources."socks-proxy-agent-8.0.2" - sources."source-map-0.6.1" - sources."source-map-support-0.5.21" - sources."sprintf-js-1.1.2" - sources."supports-color-7.2.0" - sources."supports-preserve-symlinks-flag-1.0.0" - sources."systeminformation-5.21.17" - sources."to-regex-range-5.0.1" - sources."tslib-2.6.2" - sources."tv4-1.3.0" - sources."tx2-1.0.5" - sources."universalify-0.1.2" - sources."utf-8-validate-5.0.10" - sources."uuid-3.4.0" - (sources."vizion-2.2.1" // { + (sources."wrap-ansi-cjs-7.0.0" // { dependencies = [ - sources."async-2.6.4" + sources."ansi-styles-4.3.0" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."emoji-regex-8.0.0" + sources."string-width-4.2.3" ]; }) sources."wrappy-1.0.2" - sources."ws-7.4.6" sources."yallist-4.0.0" - sources."yamljs-0.3.0" + sources."yaml-2.3.4" + sources."yn-3.1.1" + sources."yocto-queue-0.1.0" ]; buildInputs = globalBuildInputs; meta = { - description = "Production process manager for Node.JS applications with a built-in load balancer."; - homepage = "http://pm2.keymetrics.io/"; - license = "AGPL-3.0"; }; production = true; bypassCache = true; @@ -90104,10 +92030,10 @@ in pnpm = nodeEnv.buildNodePackage { name = "pnpm"; packageName = "pnpm"; - version = "8.10.5"; + version = "8.14.0"; src = fetchurl { - url = "https://registry.npmjs.org/pnpm/-/pnpm-8.10.5.tgz"; - sha512 = "nBYfQz2FVRxY8bOhCxjMPfcrWgLSyu5lZswFtvIK3e+UfnldkMOQM7+S3lUXfq1p2H9iqdqtyR56LjtY9JNToA=="; + url = "https://registry.npmjs.org/pnpm/-/pnpm-8.14.0.tgz"; + sha512 = "XUv5ezSfrxpRMYqhuoh+mdnDbiA9vLVZOKkf3dJFQkbLAHI9ZkL1TUY6D1KicB2t+N4AKjf8YTyc3JTtVnXdzg=="; }; buildInputs = globalBuildInputs; meta = { @@ -90150,10 +92076,10 @@ in postcss = nodeEnv.buildNodePackage { name = "postcss"; packageName = "postcss"; - version = "8.4.31"; + version = "8.4.33"; src = fetchurl { - url = "https://registry.npmjs.org/postcss/-/postcss-8.4.31.tgz"; - sha512 = "PS08Iboia9mts/2ygV3eLpY5ghnUcfLV/EXTOW1E2qYxJKGGBUtNjN76FYHnMs36RmARn41bC0AZmn+rR0OVpQ=="; + url = "https://registry.npmjs.org/postcss/-/postcss-8.4.33.tgz"; + sha512 = "Kkpbhhdjw2qQs2O2DGX+8m5OVqEcbB9HRBvuYM9pgrjEFUg30A9LmXNlTAUj4S9kgtGyrMbTzVjH7E+s5Re2yg=="; }; dependencies = [ sources."nanoid-3.3.7" @@ -90173,60 +92099,37 @@ in postcss-cli = nodeEnv.buildNodePackage { name = "postcss-cli"; packageName = "postcss-cli"; - version = "10.1.0"; + version = "11.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/postcss-cli/-/postcss-cli-10.1.0.tgz"; - sha512 = "Zu7PLORkE9YwNdvOeOVKPmWghprOtjFQU3srMUGbdz3pHJiFh7yZ4geiZFMkjMfB0mtTFR3h8RemR62rPkbOPA=="; + url = "https://registry.npmjs.org/postcss-cli/-/postcss-cli-11.0.0.tgz"; + sha512 = "xMITAI7M0u1yolVcXJ9XTZiO9aO49mcoKQy6pCDFdMh9kGqhzLVpWxeD/32M/QBmkhcGypZFFOLNLmIW4Pg4RA=="; }; dependencies = [ - sources."@cspotcode/source-map-support-0.8.1" - sources."@jridgewell/resolve-uri-3.1.1" - sources."@jridgewell/sourcemap-codec-1.4.15" - sources."@jridgewell/trace-mapping-0.3.9" sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" - sources."@swc/core-1.3.99" - sources."@swc/counter-0.1.2" - sources."@swc/helpers-0.5.3" - sources."@swc/types-0.1.5" - sources."@swc/wasm-1.3.99" - sources."@tsconfig/node10-1.0.9" - sources."@tsconfig/node12-1.0.11" - sources."@tsconfig/node14-1.0.3" - sources."@tsconfig/node16-1.0.4" - sources."@types/node-20.9.3" - sources."acorn-8.11.2" - sources."acorn-walk-8.3.0" + sources."@sindresorhus/merge-streams-1.0.0" sources."ansi-regex-5.0.1" sources."ansi-styles-4.3.0" sources."anymatch-3.1.3" - sources."arg-4.1.3" sources."binary-extensions-2.2.0" sources."braces-3.0.2" sources."chokidar-3.5.3" sources."cliui-8.0.1" sources."color-convert-2.0.1" sources."color-name-1.1.4" - sources."create-require-1.1.1" sources."dependency-graph-0.11.0" - sources."diff-4.0.2" - sources."dir-glob-3.0.1" sources."emoji-regex-8.0.0" sources."escalade-3.1.1" sources."fast-glob-3.3.2" - sources."fastq-1.15.0" + sources."fastq-1.16.0" sources."fill-range-7.0.1" - sources."fs-extra-11.1.1" + sources."fs-extra-11.2.0" sources."fsevents-2.3.3" sources."get-caller-file-2.0.5" sources."get-stdin-9.0.0" sources."glob-parent-5.1.2" - (sources."globby-13.2.2" // { - dependencies = [ - sources."slash-4.0.0" - ]; - }) + sources."globby-14.0.0" sources."graceful-fs-4.2.11" sources."ignore-5.3.0" sources."is-binary-path-2.1.0" @@ -90234,19 +92137,19 @@ in sources."is-fullwidth-code-point-3.0.0" sources."is-glob-4.0.3" sources."is-number-7.0.0" + sources."jiti-1.21.0" sources."jsonfile-6.1.0" sources."lilconfig-3.0.0" - sources."make-error-1.3.6" sources."merge2-1.4.1" sources."micromatch-4.0.5" sources."nanoid-3.3.7" sources."normalize-path-3.0.0" - sources."path-type-4.0.0" + sources."path-type-5.0.0" sources."picocolors-1.0.0" sources."picomatch-2.3.1" sources."pify-2.3.0" - sources."postcss-8.4.31" - sources."postcss-load-config-4.0.2" + sources."postcss-8.4.33" + sources."postcss-load-config-5.0.2" sources."postcss-reporter-7.0.5" sources."pretty-hrtime-1.0.3" sources."queue-microtask-1.2.3" @@ -90261,18 +92164,13 @@ in sources."strip-ansi-6.0.1" sources."thenby-1.3.4" sources."to-regex-range-5.0.1" - sources."ts-node-10.9.1" - sources."tslib-2.6.2" - sources."typescript-5.3.2" - sources."undici-types-5.26.5" + sources."unicorn-magic-0.1.0" sources."universalify-2.0.1" - sources."v8-compile-cache-lib-3.0.1" sources."wrap-ansi-7.0.0" sources."y18n-5.0.8" sources."yaml-2.3.4" sources."yargs-17.7.2" sources."yargs-parser-21.1.1" - sources."yn-3.1.1" ]; buildInputs = globalBuildInputs; meta = { @@ -90312,7 +92210,7 @@ in sources."minimist-1.2.8" sources."mkdirp-classic-0.5.3" sources."napi-build-utils-1.0.2" - sources."node-abi-3.51.0" + sources."node-abi-3.54.0" sources."once-1.4.0" sources."pump-3.0.0" sources."rc-1.2.8" @@ -90343,10 +92241,10 @@ in prettier = nodeEnv.buildNodePackage { name = "prettier"; packageName = "prettier"; - version = "3.1.0"; + version = "3.1.1"; src = fetchurl { - url = "https://registry.npmjs.org/prettier/-/prettier-3.1.0.tgz"; - sha512 = "TQLvXjq5IAibjh8EpBIkNKxO749UEWABoiIZehEPiY4GNpVdhaFKqSTu+QrlU6D2dPAfubRmtJTi4K4YkQ5eXw=="; + url = "https://registry.npmjs.org/prettier/-/prettier-3.1.1.tgz"; + sha512 = "22UbSzg8luF4UuZtzgiUOfcGM8s4tjBv6dJRT7j275NXsy2jb4aJa4NNveul5x4eqlF1wuhuR2RElK71RvmVaw=="; }; buildInputs = globalBuildInputs; meta = { @@ -90361,27 +92259,20 @@ in prettier-plugin-toml = nodeEnv.buildNodePackage { name = "prettier-plugin-toml"; packageName = "prettier-plugin-toml"; - version = "1.0.0"; + version = "2.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/prettier-plugin-toml/-/prettier-plugin-toml-1.0.0.tgz"; - sha512 = "YMn4Fqy/ANHommZh61s5qqtpfcgPB00Ty890bFPr73B0HAy77zgyH89SvAK+NyPPx3AdM56a4Yo66LH9GPnuZw=="; + url = "https://registry.npmjs.org/prettier-plugin-toml/-/prettier-plugin-toml-2.0.1.tgz"; + sha512 = "99z1YOkViECHtXQjGIigd3talI/ybUI1zB3yniAwUrlWBXupNXThB1hM6bwSMUEj2/+tomTlMtT98F5t4s8IWA=="; }; dependencies = [ - sources."@chevrotain/cst-dts-gen-11.0.3" - sources."@chevrotain/gast-11.0.3" - sources."@chevrotain/regexp-to-ast-11.0.3" - sources."@chevrotain/types-11.0.3" - sources."@chevrotain/utils-11.0.3" - sources."@toml-tools/lexer-1.0.0" - sources."@toml-tools/parser-1.0.0" - sources."chevrotain-11.0.3" - sources."lodash-es-4.17.21" - sources."prettier-3.1.0" + sources."@taplo/core-0.1.1" + sources."@taplo/lib-0.4.0-alpha.2" + sources."prettier-3.1.1" ]; buildInputs = globalBuildInputs; meta = { - description = "TOML Prettier Plugin"; - homepage = "https://github.com/un-ts/toml-tools/tree/master#readme"; + description = "An opinionated `toml` formatter plugin for Prettier"; + homepage = "https://github.com/un-ts/prettier/tree/master/packages/prettier"; license = "MIT"; }; production = true; @@ -90391,13 +92282,17 @@ in prisma = nodeEnv.buildNodePackage { name = "prisma"; packageName = "prisma"; - version = "5.6.0"; + version = "5.7.1"; src = fetchurl { - url = "https://registry.npmjs.org/prisma/-/prisma-5.6.0.tgz"; - sha512 = "EEaccku4ZGshdr2cthYHhf7iyvCcXqwJDvnoQRAJg5ge2Tzpv0e2BaMCp+CbbDUwoVTzwgOap9Zp+d4jFa2O9A=="; + url = "https://registry.npmjs.org/prisma/-/prisma-5.7.1.tgz"; + sha512 = "ekho7ziH0WEJvC4AxuJz+ewRTMskrebPcrKuBwcNzVDniYxx+dXOGcorNeIb9VEMO5vrKzwNYvhD271Ui2jnNw=="; }; dependencies = [ - sources."@prisma/engines-5.6.0" + sources."@prisma/debug-5.7.1" + sources."@prisma/engines-5.7.1" + sources."@prisma/engines-version-5.7.1-1.0ca5ccbcfa6bdc81c003cf549abe4269f59c41e5" + sources."@prisma/fetch-engine-5.7.1" + sources."@prisma/get-platform-5.7.1" ]; buildInputs = globalBuildInputs; meta = { @@ -90412,22 +92307,22 @@ in "@prisma/language-server" = nodeEnv.buildNodePackage { name = "_at_prisma_slash_language-server"; packageName = "@prisma/language-server"; - version = "5.6.0"; + version = "5.7.1"; src = fetchurl { - url = "https://registry.npmjs.org/@prisma/language-server/-/language-server-5.6.0.tgz"; - sha512 = "SmDWr8K6UoX7v1NHngHJS4mnhp7QWQ7ahN1Yrib0lBXy91I64aBqERBKEsmGIYaFc/qybWEoX4UtsboH7bQ6jw=="; + url = "https://registry.npmjs.org/@prisma/language-server/-/language-server-5.7.1.tgz"; + sha512 = "mUg+W3CaTLhEFLYA4sm0nHA2ojnPC3vySU50XJXPJk0owaZBJK6243ujXuRnFjzv4EFvH0R3FdJFw/nIWQfEEA=="; }; dependencies = [ sources."@ampproject/remapping-2.2.1" - sources."@babel/code-frame-7.23.4" - sources."@babel/compat-data-7.23.3" - (sources."@babel/core-7.23.3" // { + sources."@babel/code-frame-7.23.5" + sources."@babel/compat-data-7.23.5" + (sources."@babel/core-7.23.7" // { dependencies = [ sources."convert-source-map-2.0.0" ]; }) - sources."@babel/generator-7.23.4" - sources."@babel/helper-compilation-targets-7.22.15" + sources."@babel/generator-7.23.6" + sources."@babel/helper-compilation-targets-7.23.6" sources."@babel/helper-environment-visitor-7.22.20" sources."@babel/helper-function-name-7.23.0" sources."@babel/helper-hoist-variables-7.22.5" @@ -90437,13 +92332,13 @@ in sources."@babel/helper-split-export-declaration-7.22.6" sources."@babel/helper-string-parser-7.23.4" sources."@babel/helper-validator-identifier-7.22.20" - sources."@babel/helper-validator-option-7.22.15" - sources."@babel/helpers-7.23.4" + sources."@babel/helper-validator-option-7.23.5" + sources."@babel/helpers-7.23.7" sources."@babel/highlight-7.23.4" - sources."@babel/parser-7.23.4" + sources."@babel/parser-7.23.6" sources."@babel/template-7.22.15" - sources."@babel/traverse-7.23.4" - sources."@babel/types-7.23.4" + sources."@babel/traverse-7.23.7" + sources."@babel/types-7.23.6" sources."@istanbuljs/load-nyc-config-1.1.0" sources."@istanbuljs/schema-0.1.3" sources."@jridgewell/gen-mapping-0.3.3" @@ -90451,7 +92346,7 @@ in sources."@jridgewell/set-array-1.1.2" sources."@jridgewell/sourcemap-codec-1.4.15" sources."@jridgewell/trace-mapping-0.3.20" - sources."@prisma/prisma-schema-wasm-5.6.0-32.e95e739751f42d8ca026f6b910f5a2dc5adeaeee" + sources."@prisma/prisma-schema-wasm-5.7.1-1.0ca5ccbcfa6bdc81c003cf549abe4269f59c41e5" sources."@types/js-levenshtein-1.1.3" sources."aggregate-error-3.1.0" sources."ansi-regex-5.0.1" @@ -90461,10 +92356,10 @@ in sources."argparse-1.0.10" sources."balanced-match-1.0.2" sources."brace-expansion-1.1.11" - sources."browserslist-4.22.1" + sources."browserslist-4.22.2" sources."caching-transform-4.0.0" sources."camelcase-5.3.1" - sources."caniuse-lite-1.0.30001563" + sources."caniuse-lite-1.0.30001576" sources."chalk-2.4.2" sources."clean-stack-2.2.0" sources."cliui-6.0.0" @@ -90477,7 +92372,7 @@ in sources."debug-4.3.4" sources."decamelize-1.2.0" sources."default-require-extensions-3.0.1" - sources."electron-to-chromium-1.4.589" + sources."electron-to-chromium-1.4.623" sources."emoji-regex-8.0.0" sources."es6-error-4.1.1" sources."escalade-3.1.1" @@ -90535,7 +92430,7 @@ in sources."minimatch-3.1.2" sources."ms-2.1.2" sources."node-preload-0.2.1" - sources."node-releases-2.0.13" + sources."node-releases-2.0.14" sources."nyc-15.1.0" sources."once-1.4.0" sources."p-limit-2.3.0" @@ -90648,7 +92543,7 @@ in sources."jackspeak-2.3.6" sources."keypress-0.2.1" sources."lodash-4.17.21" - sources."lru-cache-10.0.3" + sources."lru-cache-10.1.0" sources."minimatch-3.0.8" sources."minipass-7.0.4" sources."once-1.4.0" @@ -90874,7 +92769,7 @@ in sources."node-static-0.7.11" sources."object-inspect-1.13.1" sources."object-keys-1.1.1" - sources."object.assign-4.1.4" + sources."object.assign-4.1.5" sources."once-1.4.0" (sources."optimist-0.6.1" // { dependencies = [ @@ -91030,10 +92925,10 @@ in purs-tidy = nodeEnv.buildNodePackage { name = "purs-tidy"; packageName = "purs-tidy"; - version = "0.10.0"; + version = "0.10.1"; src = fetchurl { - url = "https://registry.npmjs.org/purs-tidy/-/purs-tidy-0.10.0.tgz"; - sha512 = "ULbJfBHRngczYwcOzugytRiNy+Guy2VXoAG1jMtGaSFEaUZk1lZkKU11t8jIZTrDdOrkgqlWCZLi3mfcHvdimA=="; + url = "https://registry.npmjs.org/purs-tidy/-/purs-tidy-0.10.1.tgz"; + sha512 = "i1QvMaDEaZXv/GWZNFWs5CISiBOkwPhG4D1S4Rw6zUCGaE+NQNWTjvwY21rifynGa2N2TiBJRC61LkORbmGxrA=="; }; buildInputs = globalBuildInputs; meta = { @@ -91066,10 +92961,10 @@ in pyright = nodeEnv.buildNodePackage { name = "pyright"; packageName = "pyright"; - version = "1.1.336"; + version = "1.1.344"; src = fetchurl { - url = "https://registry.npmjs.org/pyright/-/pyright-1.1.336.tgz"; - sha512 = "PE/ArjnfS5dKon05zAX2eMzSQmu4ftCITzLqKgFKuwLIRnKJ+l4QGwkCKtYvWoXKm1fWr+TjqYpdRejrYkolyg=="; + url = "https://registry.npmjs.org/pyright/-/pyright-1.1.344.tgz"; + sha512 = "K0nhCxUqoACGgyZO1VfWSx5NkT5VTe0VKblLu09RMPmrzdblZi8DbfU6Hy9OXMSe2sBbAEtK685QRVi05V98tA=="; }; buildInputs = globalBuildInputs; meta = { @@ -91091,8 +92986,8 @@ in }; dependencies = [ sources."@types/prop-types-15.7.11" - sources."@types/react-18.2.38" - sources."@types/scheduler-0.16.7" + sources."@types/react-18.2.47" + sources."@types/scheduler-0.16.8" sources."@types/yoga-layout-1.9.2" sources."ansi-escapes-4.3.2" sources."ansi-regex-5.0.1" @@ -91109,7 +93004,7 @@ in sources."cli-truncate-2.1.0" sources."color-convert-2.0.1" sources."color-name-1.1.4" - sources."csstype-3.1.2" + sources."csstype-3.1.3" sources."currently-unhandled-0.4.1" sources."decamelize-1.2.0" (sources."decamelize-keys-1.1.1" // { @@ -91229,10 +93124,10 @@ in "reveal.js" = nodeEnv.buildNodePackage { name = "reveal.js"; packageName = "reveal.js"; - version = "5.0.2"; + version = "5.0.4"; src = fetchurl { - url = "https://registry.npmjs.org/reveal.js/-/reveal.js-5.0.2.tgz"; - sha512 = "G5dhsr/2wormdrYPtZBfRamvnPrHc/8TtYVH3EpIzfMyKSiTprFwn61nFZbcmeK4iKKdLq2MMiiMNqlRmkBU4A=="; + url = "https://registry.npmjs.org/reveal.js/-/reveal.js-5.0.4.tgz"; + sha512 = "480pVhre9SXWuE4QbDwG0nPrip3TkifflqaKQWF8Ynf4iYIUBfgu5leeMso0srubQsZQ+G2OzktAfAkrvBY0Ww=="; }; buildInputs = globalBuildInputs; meta = { @@ -91268,7 +93163,7 @@ in sources."is-fullwidth-code-point-3.0.0" sources."isexe-2.0.0" sources."jackspeak-2.3.6" - sources."lru-cache-10.0.3" + sources."lru-cache-10.1.0" sources."minimatch-9.0.3" sources."minipass-7.0.4" sources."path-key-3.1.1" @@ -91313,11 +93208,14 @@ in rollup = nodeEnv.buildNodePackage { name = "rollup"; packageName = "rollup"; - version = "4.5.0"; + version = "4.9.4"; src = fetchurl { - url = "https://registry.npmjs.org/rollup/-/rollup-4.5.0.tgz"; - sha512 = "41xsWhzxqjMDASCxH5ibw1mXk+3c4TNI2UjKbLxe6iEzrSQnqOzmmK8/3mufCPbzHNJ2e04Fc1ddI35hHy+8zg=="; + url = "https://registry.npmjs.org/rollup/-/rollup-4.9.4.tgz"; + sha512 = "2ztU7pY/lrQyXSCnnoU4ICjT/tCG9cdH3/G25ERqE3Lst6vl2BCM5hL2Nw+sslAvAf+ccKsAq1SkKQALyqhR7g=="; }; + dependencies = [ + sources."@types/estree-1.0.5" + ]; buildInputs = globalBuildInputs; meta = { description = "Next-generation ES module bundler"; @@ -91337,15 +93235,15 @@ in sources."@aashutoshrathi/word-wrap-1.2.6" sources."@eslint-community/eslint-utils-4.4.0" sources."@eslint-community/regexpp-4.10.0" - (sources."@eslint/eslintrc-2.1.3" // { + (sources."@eslint/eslintrc-2.1.4" // { dependencies = [ sources."brace-expansion-1.1.11" sources."minimatch-3.1.2" sources."strip-json-comments-3.1.1" ]; }) - sources."@eslint/js-8.54.0" - sources."@hpcc-js/wasm-2.14.1" + sources."@eslint/js-8.56.0" + sources."@hpcc-js/wasm-2.15.3" (sources."@humanwhocodes/config-array-0.11.13" // { dependencies = [ sources."brace-expansion-1.1.11" @@ -91363,16 +93261,20 @@ in sources."@types/node-16.11.68" sources."@types/semver-7.5.6" sources."@types/vscode-1.75.1" - sources."@typescript-eslint/eslint-plugin-6.12.0" - sources."@typescript-eslint/parser-6.12.0" - sources."@typescript-eslint/scope-manager-6.12.0" - sources."@typescript-eslint/type-utils-6.12.0" - sources."@typescript-eslint/types-6.12.0" - sources."@typescript-eslint/typescript-estree-6.12.0" - sources."@typescript-eslint/utils-6.12.0" - sources."@typescript-eslint/visitor-keys-6.12.0" + sources."@typescript-eslint/eslint-plugin-6.18.0" + sources."@typescript-eslint/parser-6.18.0" + sources."@typescript-eslint/scope-manager-6.18.0" + sources."@typescript-eslint/type-utils-6.18.0" + sources."@typescript-eslint/types-6.18.0" + (sources."@typescript-eslint/typescript-estree-6.18.0" // { + dependencies = [ + sources."minimatch-9.0.3" + ]; + }) + sources."@typescript-eslint/utils-6.18.0" + sources."@typescript-eslint/visitor-keys-6.18.0" sources."@ungap/structured-clone-1.2.0" - sources."@vscode/test-electron-2.3.6" + sources."@vscode/test-electron-2.3.8" (sources."@vscode/vsce-2.22.0" // { dependencies = [ sources."brace-expansion-1.1.11" @@ -91380,7 +93282,7 @@ in sources."minimatch-3.1.2" ]; }) - sources."acorn-8.11.2" + sources."acorn-8.11.3" sources."acorn-jsx-5.3.2" sources."agent-base-6.0.2" sources."ajv-6.12.6" @@ -91474,7 +93376,7 @@ in sources."entities-4.5.0" sources."escalade-3.1.1" sources."escape-string-regexp-1.0.5" - (sources."eslint-8.54.0" // { + (sources."eslint-8.56.0" // { dependencies = [ sources."brace-expansion-1.1.11" sources."chalk-4.1.2" @@ -91498,14 +93400,14 @@ in sources."fast-glob-3.3.2" sources."fast-json-stable-stringify-2.1.0" sources."fast-levenshtein-2.0.6" - sources."fastq-1.15.0" + sources."fastq-1.16.0" sources."fd-slicer-1.1.0" sources."file-entry-cache-6.0.1" sources."fill-range-7.0.1" sources."find-up-5.0.0" sources."flat-cache-3.2.0" sources."flatted-3.2.9" - sources."follow-redirects-1.15.3" + sources."follow-redirects-1.15.4" sources."fs-constants-1.0.0" sources."fs.realpath-1.0.0" sources."function-bind-1.1.2" @@ -91519,7 +93421,7 @@ in ]; }) sources."glob-parent-5.1.2" - sources."globals-13.23.0" + sources."globals-13.24.0" sources."globby-11.1.0" sources."gopd-1.0.1" sources."graphemer-1.4.0" @@ -91582,7 +93484,7 @@ in sources."mute-stream-0.0.8" sources."napi-build-utils-1.0.2" sources."natural-compare-1.4.0" - sources."node-abi-3.51.0" + sources."node-abi-3.54.0" sources."node-addon-api-4.3.0" sources."nth-check-2.1.1" sources."object-inspect-1.13.1" @@ -91612,7 +93514,7 @@ in sources."picomatch-2.3.1" sources."prebuild-install-7.1.1" sources."prelude-ls-1.2.1" - sources."prettier-3.1.0" + sources."prettier-3.1.1" sources."process-nextick-args-2.0.1" sources."pump-3.0.0" sources."punycode-2.3.1" @@ -91661,7 +93563,7 @@ in sources."type-check-0.4.0" sources."type-fest-0.20.2" sources."typed-rest-client-1.8.11" - sources."typescript-5.3.2" + sources."typescript-5.3.3" sources."uc.micro-1.0.6" sources."underscore-1.13.6" sources."uri-js-4.4.1" @@ -91694,10 +93596,10 @@ in sass = nodeEnv.buildNodePackage { name = "sass"; packageName = "sass"; - version = "1.69.5"; + version = "1.69.7"; src = fetchurl { - url = "https://registry.npmjs.org/sass/-/sass-1.69.5.tgz"; - sha512 = "qg2+UCJibLr2LCVOt3OlPhr/dqVHWOa9XtZf2OjbLs/T4VPSJ00udtgJxH3neXZm+QqX8B+3cU7RaLqp1iVfcQ=="; + url = "https://registry.npmjs.org/sass/-/sass-1.69.7.tgz"; + sha512 = "rzj2soDeZ8wtE2egyLXgOOHQvaC2iosZrkF6v3EUG+tBwEvhqUCzm0VP3k9gHF9LXbSrRhT5SksoI56Iw8NPnQ=="; }; dependencies = [ sources."anymatch-3.1.3" @@ -92125,10 +94027,10 @@ in sloc = nodeEnv.buildNodePackage { name = "sloc"; packageName = "sloc"; - version = "0.3.0"; + version = "0.3.1"; src = fetchurl { - url = "https://registry.npmjs.org/sloc/-/sloc-0.3.0.tgz"; - sha512 = "fKmMA8q5OyeZpFCxBa3FuFywQcziQXKBw9B8jwDJ/Ra3H/pkZpQJl9g5s3MIjUo2jwUDHUnaxXgVXObXFdiJBw=="; + url = "https://registry.npmjs.org/sloc/-/sloc-0.3.1.tgz"; + sha512 = "ImBLf1q0R7OHUqAVVjUkW8q1qqGL3hI4ThWbKd8EMe1l1gGmxu062zSHyD/kz8B0Wii5boVYJ3/ZnFatpikBkw=="; }; dependencies = [ sources."async-3.2.5" @@ -92304,16 +94206,16 @@ in "socket.io" = nodeEnv.buildNodePackage { name = "socket.io"; packageName = "socket.io"; - version = "4.7.2"; + version = "4.7.3"; src = fetchurl { - url = "https://registry.npmjs.org/socket.io/-/socket.io-4.7.2.tgz"; - sha512 = "bvKVS29/I5fl2FGLNHuXlQaUH/BlzX1IN6S+NKLNZpBsPZIDH+90eQmCs2Railn4YUiww4SzUedJ6+uzwFnKLw=="; + url = "https://registry.npmjs.org/socket.io/-/socket.io-4.7.3.tgz"; + sha512 = "SE+UIQXBQE+GPG2oszWMlsEmWtHVqw/h1VrYJGK5/MC7CH5p58N448HwIrtREcvR4jfdOJAY4ieQfxMr55qbbw=="; }; dependencies = [ sources."@socket.io/component-emitter-3.1.0" sources."@types/cookie-0.4.1" sources."@types/cors-2.8.17" - sources."@types/node-20.9.3" + sources."@types/node-20.10.7" sources."accepts-1.3.8" sources."base64id-2.0.0" sources."bufferutil-4.0.8" @@ -92326,7 +94228,7 @@ in sources."mime-types-2.1.35" sources."ms-2.1.2" sources."negotiator-0.6.3" - sources."node-gyp-build-4.7.0" + sources."node-gyp-build-4.8.0" sources."object-assign-4.1.1" sources."socket.io-adapter-2.5.2" sources."socket.io-parser-4.2.4" @@ -92354,7 +94256,7 @@ in sha512 = "CIlLQsG8ffQ2B+2A/s3rXiaTXDWlEKBMya64ajzDcpDZ8bpB5dOyznWQJB+lyUn6/lJ8P+5xe4jKO60S6yLoMw=="; }; dependencies = [ - (sources."@babel/code-frame-7.23.4" // { + (sources."@babel/code-frame-7.23.5" // { dependencies = [ sources."ansi-styles-3.2.1" sources."chalk-2.4.2" @@ -92389,7 +94291,7 @@ in sources."camelcase-keys-7.0.2" sources."chalk-4.1.2" sources."cli-cursor-4.0.0" - sources."cli-spinners-2.9.1" + sources."cli-spinners-2.9.2" sources."clone-1.0.4" sources."color-convert-2.0.1" sources."color-name-1.1.4" @@ -92520,10 +94422,10 @@ in sql-formatter = nodeEnv.buildNodePackage { name = "sql-formatter"; packageName = "sql-formatter"; - version = "14.0.0"; + version = "15.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/sql-formatter/-/sql-formatter-14.0.0.tgz"; - sha512 = "VcHYMRvZqg3RNjjxNB/puT9O1hR5QLXTvgTaBtxXcvmRQwSnH9M+oW2Ti+uFuVVU8HoNlOjU2uKHv8c0FQNsdQ=="; + url = "https://registry.npmjs.org/sql-formatter/-/sql-formatter-15.0.2.tgz"; + sha512 = "B8FTRc1dhb36lfuwSdiLhwrhkvT3PU/3es7YDPPQBOhbGHdXKlweAXTRS+QfCWk06ufAh118yFja6NcukBS4gg=="; }; dependencies = [ sources."argparse-2.0.1" @@ -92567,18 +94469,18 @@ in svelte-check = nodeEnv.buildNodePackage { name = "svelte-check"; packageName = "svelte-check"; - version = "3.6.0"; + version = "3.6.2"; src = fetchurl { - url = "https://registry.npmjs.org/svelte-check/-/svelte-check-3.6.0.tgz"; - sha512 = "8VfqhfuRJ1sKW+o8isH2kPi0RhjXH1nNsIbCFGyoUHG+ZxVxHYRKcb+S8eaL/1tyj3VGvWYx3Y5+oCUsJgnzcw=="; + url = "https://registry.npmjs.org/svelte-check/-/svelte-check-3.6.2.tgz"; + sha512 = "E6iFh4aUCGJLRz6QZXH3gcN/VFfkzwtruWSRmlKrLWQTiO6VzLsivR6q02WYLGNAGecV3EocqZuCDrC2uttZ0g=="; }; dependencies = [ sources."@ampproject/remapping-2.2.1" - sources."@babel/code-frame-7.23.4" - sources."@babel/compat-data-7.23.3" - sources."@babel/core-7.23.3" - sources."@babel/generator-7.23.4" - sources."@babel/helper-compilation-targets-7.22.15" + sources."@babel/code-frame-7.23.5" + sources."@babel/compat-data-7.23.5" + sources."@babel/core-7.23.7" + sources."@babel/generator-7.23.6" + sources."@babel/helper-compilation-targets-7.23.6" sources."@babel/helper-environment-visitor-7.22.20" sources."@babel/helper-function-name-7.23.0" sources."@babel/helper-hoist-variables-7.22.5" @@ -92588,18 +94490,13 @@ in sources."@babel/helper-split-export-declaration-7.22.6" sources."@babel/helper-string-parser-7.23.4" sources."@babel/helper-validator-identifier-7.22.20" - sources."@babel/helper-validator-option-7.22.15" - sources."@babel/helpers-7.23.4" + sources."@babel/helper-validator-option-7.23.5" + sources."@babel/helpers-7.23.7" sources."@babel/highlight-7.23.4" - sources."@babel/parser-7.23.4" + sources."@babel/parser-7.23.6" sources."@babel/template-7.22.15" - sources."@babel/traverse-7.23.4" - sources."@babel/types-7.23.4" - (sources."@cspotcode/source-map-support-0.8.1" // { - dependencies = [ - sources."@jridgewell/trace-mapping-0.3.9" - ]; - }) + sources."@babel/traverse-7.23.7" + sources."@babel/types-7.23.6" sources."@jridgewell/gen-mapping-0.3.3" sources."@jridgewell/resolve-uri-3.1.1" sources."@jridgewell/set-array-1.1.2" @@ -92608,24 +94505,16 @@ in sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" - sources."@swc/core-1.3.99" - sources."@swc/counter-0.1.2" - sources."@swc/helpers-0.5.3" - sources."@swc/types-0.1.5" - sources."@swc/wasm-1.3.99" - sources."@tsconfig/node10-1.0.9" - sources."@tsconfig/node12-1.0.11" - sources."@tsconfig/node14-1.0.3" - sources."@tsconfig/node16-1.0.4" sources."@types/estree-1.0.5" - sources."@types/node-20.9.3" sources."@types/pug-2.0.10" - sources."acorn-8.11.2" - sources."acorn-typescript-1.4.11" - sources."acorn-walk-8.3.0" + sources."acorn-7.4.1" + (sources."acorn-typescript-1.4.13" // { + dependencies = [ + sources."acorn-8.11.3" + ]; + }) sources."ansi-styles-3.2.1" sources."anymatch-3.1.3" - sources."arg-4.1.3" sources."aria-query-5.3.0" sources."asap-2.0.6" sources."assert-never-1.2.1" @@ -92636,11 +94525,11 @@ in sources."binary-extensions-2.2.0" sources."brace-expansion-1.1.11" sources."braces-3.0.2" - sources."browserslist-4.22.1" + sources."browserslist-4.22.2" sources."buffer-crc32-0.2.13" sources."call-bind-1.0.5" sources."callsites-3.1.0" - sources."caniuse-lite-1.0.30001563" + sources."caniuse-lite-1.0.30001576" sources."chalk-2.4.2" sources."character-parser-2.2.0" sources."chokidar-3.5.3" @@ -92651,24 +94540,22 @@ in sources."constantinople-4.0.1" sources."convert-source-map-2.0.0" sources."copy-anything-2.0.6" - sources."create-require-1.1.1" sources."css-3.0.0" sources."debug-4.3.4" sources."decode-uri-component-0.2.2" sources."define-data-property-1.1.1" sources."dequal-2.0.3" sources."detect-indent-6.1.0" - sources."diff-4.0.2" sources."doctypes-1.1.0" - sources."electron-to-chromium-1.4.589" + sources."electron-to-chromium-1.4.623" sources."errno-0.1.8" sources."es6-promise-3.3.1" sources."escalade-3.1.1" sources."escape-string-regexp-1.0.5" sources."esm-env-1.0.0" - sources."esrap-1.1.1" + sources."esrap-1.2.1" sources."fast-glob-3.3.2" - sources."fastq-1.15.0" + sources."fastq-1.16.0" sources."fill-range-7.0.1" sources."fs.realpath-1.0.0" sources."fsevents-2.3.3" @@ -92694,11 +94581,7 @@ in sources."inherits-2.0.4" sources."is-binary-path-2.1.0" sources."is-core-module-2.13.1" - (sources."is-expression-4.0.0" // { - dependencies = [ - sources."acorn-7.4.1" - ]; - }) + sources."is-expression-4.0.0" sources."is-extglob-2.1.1" sources."is-glob-4.0.3" sources."is-number-7.0.0" @@ -92706,6 +94589,7 @@ in sources."is-reference-3.0.2" sources."is-regex-1.1.4" sources."is-what-3.14.1" + sources."jiti-1.21.0" sources."js-stringify-1.0.2" sources."js-tokens-4.0.0" sources."jsesc-2.5.2" @@ -92715,13 +94599,12 @@ in sources."lilconfig-3.0.0" sources."locate-character-3.0.0" sources."lru-cache-5.1.1" - sources."magic-string-0.27.0" + sources."magic-string-0.30.5" (sources."make-dir-2.1.0" // { dependencies = [ sources."semver-5.7.2" ]; }) - sources."make-error-1.3.6" sources."merge2-1.4.1" sources."micromatch-4.0.5" sources."mime-1.6.0" @@ -92732,12 +94615,8 @@ in sources."mri-1.2.0" sources."ms-2.1.2" sources."nanoid-3.3.7" - (sources."needle-3.2.0" // { - dependencies = [ - sources."debug-3.2.7" - ]; - }) - sources."node-releases-2.0.13" + sources."needle-3.3.1" + sources."node-releases-2.0.14" sources."normalize-path-3.0.0" sources."object-assign-4.1.1" sources."once-1.4.0" @@ -92748,8 +94627,8 @@ in sources."picocolors-1.0.0" sources."picomatch-2.3.1" sources."pify-4.0.1" - sources."postcss-8.4.31" - sources."postcss-load-config-4.0.2" + sources."postcss-8.4.33" + sources."postcss-load-config-5.0.2" sources."promise-7.3.1" sources."prr-1.0.1" sources."pug-3.0.2" @@ -92774,7 +94653,7 @@ in sources."sade-1.8.1" sources."safer-buffer-2.1.2" sources."sander-0.5.1" - sources."sass-1.69.5" + sources."sass-1.69.7" sources."sax-1.3.0" sources."semver-6.3.1" sources."set-function-length-1.1.1" @@ -92795,27 +94674,23 @@ in sources."sugarss-4.0.1" sources."supports-color-5.5.0" sources."supports-preserve-symlinks-flag-1.0.0" - (sources."svelte-5.0.0-next.9" // { + (sources."svelte-5.0.0-next.29" // { dependencies = [ - sources."magic-string-0.30.5" + sources."acorn-8.11.3" ]; }) - sources."svelte-preprocess-5.1.0" + sources."svelte-preprocess-5.1.3" sources."to-fast-properties-2.0.0" sources."to-regex-range-5.0.1" sources."token-stream-1.0.0" - sources."ts-node-10.9.1" sources."tslib-2.6.2" - sources."typescript-5.3.2" - sources."undici-types-5.26.5" + sources."typescript-5.3.3" sources."update-browserslist-db-1.0.13" - sources."v8-compile-cache-lib-3.0.1" sources."void-elements-3.1.0" sources."with-7.0.2" sources."wrappy-1.0.2" sources."yallist-3.1.1" sources."yaml-2.3.4" - sources."yn-3.1.1" sources."zimmerframe-1.1.0" ]; buildInputs = globalBuildInputs; @@ -92831,18 +94706,18 @@ in svelte-language-server = nodeEnv.buildNodePackage { name = "svelte-language-server"; packageName = "svelte-language-server"; - version = "0.15.22"; + version = "0.16.1"; src = fetchurl { - url = "https://registry.npmjs.org/svelte-language-server/-/svelte-language-server-0.15.22.tgz"; - sha512 = "puh1lEdc5TXC2bgpcJyn9p3x8gCUIqzkGBxXQWYfUtLNjFBeGTAOqY4yosQteHGSNuoWVuNrPpoXV0ILA+NB3g=="; + url = "https://registry.npmjs.org/svelte-language-server/-/svelte-language-server-0.16.1.tgz"; + sha512 = "nbP0fbqvm1HQ0oOyJDdb3OUeEpvgG5aOpa1eNaWJaVQ7+94ie6H8dv5+Zx9lkfV66ADjvEDS9tcTAM4jWTS+1Q=="; }; dependencies = [ sources."@ampproject/remapping-2.2.1" - sources."@babel/code-frame-7.23.4" - sources."@babel/compat-data-7.23.3" - sources."@babel/core-7.23.3" - sources."@babel/generator-7.23.4" - sources."@babel/helper-compilation-targets-7.22.15" + sources."@babel/code-frame-7.23.5" + sources."@babel/compat-data-7.23.5" + sources."@babel/core-7.23.7" + sources."@babel/generator-7.23.6" + sources."@babel/helper-compilation-targets-7.23.6" sources."@babel/helper-environment-visitor-7.22.20" sources."@babel/helper-function-name-7.23.0" sources."@babel/helper-hoist-variables-7.22.5" @@ -92852,18 +94727,13 @@ in sources."@babel/helper-split-export-declaration-7.22.6" sources."@babel/helper-string-parser-7.23.4" sources."@babel/helper-validator-identifier-7.22.20" - sources."@babel/helper-validator-option-7.22.15" - sources."@babel/helpers-7.23.4" + sources."@babel/helper-validator-option-7.23.5" + sources."@babel/helpers-7.23.7" sources."@babel/highlight-7.23.4" - sources."@babel/parser-7.23.4" + sources."@babel/parser-7.23.6" sources."@babel/template-7.22.15" - sources."@babel/traverse-7.23.4" - sources."@babel/types-7.23.4" - (sources."@cspotcode/source-map-support-0.8.1" // { - dependencies = [ - sources."@jridgewell/trace-mapping-0.3.9" - ]; - }) + sources."@babel/traverse-7.23.7" + sources."@babel/types-7.23.6" sources."@emmetio/abbreviation-2.3.3" sources."@emmetio/css-abbreviation-2.1.8" sources."@emmetio/scanner-1.0.4" @@ -92875,28 +94745,16 @@ in sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" - sources."@swc/core-1.3.99" - sources."@swc/counter-0.1.2" - sources."@swc/helpers-0.5.3" - sources."@swc/types-0.1.5" - sources."@swc/wasm-1.3.99" - sources."@tsconfig/node10-1.0.9" - sources."@tsconfig/node12-1.0.11" - sources."@tsconfig/node14-1.0.3" - sources."@tsconfig/node16-1.0.4" - sources."@types/node-20.9.3" sources."@types/pug-2.0.10" - (sources."@vscode/emmet-helper-2.8.4" // { + (sources."@vscode/emmet-helper-2.9.2" // { dependencies = [ sources."vscode-uri-2.1.2" ]; }) sources."@vscode/l10n-0.0.16" - sources."acorn-8.11.2" - sources."acorn-walk-8.3.0" + sources."acorn-7.4.1" sources."ansi-styles-3.2.1" sources."anymatch-3.1.3" - sources."arg-4.1.3" sources."asap-2.0.6" sources."assert-never-1.2.1" sources."atob-2.1.2" @@ -92905,10 +94763,10 @@ in sources."binary-extensions-2.2.0" sources."brace-expansion-1.1.11" sources."braces-3.0.2" - sources."browserslist-4.22.1" + sources."browserslist-4.22.2" sources."buffer-crc32-0.2.13" sources."call-bind-1.0.5" - sources."caniuse-lite-1.0.30001563" + sources."caniuse-lite-1.0.30001576" sources."chalk-2.4.2" sources."character-parser-2.2.0" sources."chokidar-3.5.3" @@ -92919,16 +94777,14 @@ in sources."constantinople-4.0.1" sources."convert-source-map-2.0.0" sources."copy-anything-2.0.6" - sources."create-require-1.1.1" sources."css-3.0.0" sources."debug-4.3.4" sources."decode-uri-component-0.2.2" sources."dedent-js-1.0.1" sources."define-data-property-1.1.1" sources."detect-indent-6.1.0" - sources."diff-4.0.2" sources."doctypes-1.1.0" - sources."electron-to-chromium-1.4.589" + sources."electron-to-chromium-1.4.623" sources."emmet-2.4.6" sources."errno-0.1.8" sources."es6-promise-3.3.1" @@ -92936,7 +94792,7 @@ in sources."escape-string-regexp-1.0.5" sources."estree-walker-2.0.2" sources."fast-glob-3.3.2" - sources."fastq-1.15.0" + sources."fastq-1.16.0" sources."fill-range-7.0.1" sources."fs.realpath-1.0.0" sources."fsevents-2.3.3" @@ -92961,17 +94817,14 @@ in sources."inherits-2.0.4" sources."is-binary-path-2.1.0" sources."is-core-module-2.13.1" - (sources."is-expression-4.0.0" // { - dependencies = [ - sources."acorn-7.4.1" - ]; - }) + sources."is-expression-4.0.0" sources."is-extglob-2.1.1" sources."is-glob-4.0.3" sources."is-number-7.0.0" sources."is-promise-2.2.2" sources."is-regex-1.1.4" sources."is-what-3.14.1" + sources."jiti-1.21.0" sources."js-stringify-1.0.2" sources."js-tokens-4.0.0" sources."jsesc-2.5.2" @@ -92983,13 +94836,12 @@ in sources."lodash-4.17.21" sources."lower-case-2.0.2" sources."lru-cache-5.1.1" - sources."magic-string-0.27.0" + sources."magic-string-0.30.5" (sources."make-dir-2.1.0" // { dependencies = [ sources."semver-5.7.2" ]; }) - sources."make-error-1.3.6" sources."merge2-1.4.1" sources."micromatch-4.0.5" sources."mime-1.6.0" @@ -92999,13 +94851,9 @@ in sources."mkdirp-0.5.6" sources."ms-2.1.2" sources."nanoid-3.3.7" - (sources."needle-3.2.0" // { - dependencies = [ - sources."debug-3.2.7" - ]; - }) + sources."needle-3.3.1" sources."no-case-3.0.4" - sources."node-releases-2.0.13" + sources."node-releases-2.0.14" sources."normalize-path-3.0.0" sources."object-assign-4.1.1" sources."once-1.4.0" @@ -93016,10 +94864,10 @@ in sources."picocolors-1.0.0" sources."picomatch-2.3.1" sources."pify-4.0.1" - sources."postcss-8.4.31" - sources."postcss-load-config-4.0.2" - sources."prettier-2.8.8" - sources."prettier-plugin-svelte-2.10.1" + sources."postcss-8.4.33" + sources."postcss-load-config-5.0.2" + sources."prettier-3.1.1" + sources."prettier-plugin-svelte-3.1.2" sources."promise-7.3.1" sources."prr-1.0.1" sources."pug-3.0.2" @@ -93042,7 +94890,7 @@ in sources."run-parallel-1.2.0" sources."safer-buffer-2.1.2" sources."sander-0.5.1" - sources."sass-1.69.5" + sources."sass-1.69.7" sources."sax-1.3.0" sources."semver-6.3.1" sources."set-function-length-1.1.1" @@ -93064,24 +94912,21 @@ in sources."supports-color-5.5.0" sources."supports-preserve-symlinks-flag-1.0.0" sources."svelte-3.59.2" - sources."svelte-preprocess-5.1.0" - sources."svelte2tsx-0.6.25" + sources."svelte-preprocess-5.1.3" + sources."svelte2tsx-0.6.27" sources."to-fast-properties-2.0.0" sources."to-regex-range-5.0.1" sources."token-stream-1.0.0" - sources."ts-node-10.9.1" sources."tslib-2.6.2" - sources."typescript-5.3.2" - sources."undici-types-5.26.5" + sources."typescript-5.3.3" sources."update-browserslist-db-1.0.13" - sources."v8-compile-cache-lib-3.0.1" sources."void-elements-3.1.0" - (sources."vscode-css-languageservice-6.2.10" // { + (sources."vscode-css-languageservice-6.2.11" // { dependencies = [ sources."vscode-languageserver-types-3.17.5" ]; }) - (sources."vscode-html-languageservice-5.0.7" // { + (sources."vscode-html-languageservice-5.1.1" // { dependencies = [ sources."vscode-languageserver-types-3.17.5" ]; @@ -93091,13 +94936,11 @@ in sources."vscode-languageserver-protocol-3.17.2" sources."vscode-languageserver-textdocument-1.0.11" sources."vscode-languageserver-types-3.17.2" - sources."vscode-nls-5.2.0" sources."vscode-uri-3.0.8" sources."with-7.0.2" sources."wrappy-1.0.2" sources."yallist-3.1.1" sources."yaml-2.3.4" - sources."yn-3.1.1" ]; buildInputs = globalBuildInputs; meta = { @@ -93112,10 +94955,10 @@ in svgo = nodeEnv.buildNodePackage { name = "svgo"; packageName = "svgo"; - version = "3.0.4"; + version = "3.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/svgo/-/svgo-3.0.4.tgz"; - sha512 = "T+Xul3JwuJ6VGXKo/p2ndqx1ibxNKnLTvRc1ZTWKCfyKS/GgNjRZcYsK84fxTsy/izr91g/Rwx6fGnVgaFSI5g=="; + url = "https://registry.npmjs.org/svgo/-/svgo-3.2.0.tgz"; + sha512 = "4PP6CMW/V7l/GmKRKzsLR8xxjdHTV4IMvhTnpuHwwBazSIlw5W/5SmPjN8Dwyt7lKbSJrRDgp4t9ph0HgChFBQ=="; }; dependencies = [ sources."@trysound/sax-0.2.0" @@ -93153,14 +94996,15 @@ in tailwindcss = nodeEnv.buildNodePackage { name = "tailwindcss"; packageName = "tailwindcss"; - version = "3.3.5"; + version = "3.4.1"; src = fetchurl { - url = "https://registry.npmjs.org/tailwindcss/-/tailwindcss-3.3.5.tgz"; - sha512 = "5SEZU4J7pxZgSkv7FP1zY8i2TIAOooNZ1e/OGtxIEv6GltpoiXUqWvLy89+a10qYTB1N5Ifkuw9lqQkN9sscvA=="; + url = "https://registry.npmjs.org/tailwindcss/-/tailwindcss-3.4.1.tgz"; + sha512 = "qAYmXRfk3ENzuPBakNK0SRrUDipP8NQnEY6772uDhflcQz5EhRdD7JNZxyrFHVQNCwULPBn6FNPp9brpO7ctcA=="; }; dependencies = [ sources."@alloc/quick-lru-5.2.0" sources."@cspotcode/source-map-support-0.8.1" + sources."@isaacs/cliui-8.0.2" sources."@jridgewell/gen-mapping-0.3.3" sources."@jridgewell/resolve-uri-3.1.1" sources."@jridgewell/set-array-1.1.2" @@ -93169,24 +95013,26 @@ in sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" - sources."@swc/core-1.3.99" + sources."@swc/core-1.3.102" sources."@swc/counter-0.1.2" sources."@swc/helpers-0.5.3" sources."@swc/types-0.1.5" - sources."@swc/wasm-1.3.99" + sources."@swc/wasm-1.3.102" sources."@tsconfig/node10-1.0.9" sources."@tsconfig/node12-1.0.11" sources."@tsconfig/node14-1.0.3" sources."@tsconfig/node16-1.0.4" - sources."@types/node-20.9.3" - sources."acorn-8.11.2" - sources."acorn-walk-8.3.0" + sources."@types/node-20.10.7" + sources."acorn-8.11.3" + sources."acorn-walk-8.3.1" + sources."ansi-regex-5.0.1" + sources."ansi-styles-6.2.1" sources."any-promise-1.3.0" sources."anymatch-3.1.3" sources."arg-5.0.2" sources."balanced-match-1.0.2" sources."binary-extensions-2.2.0" - sources."brace-expansion-1.1.11" + sources."brace-expansion-2.0.1" sources."braces-3.0.2" sources."camelcase-css-2.0.1" (sources."chokidar-3.5.3" // { @@ -93194,53 +95040,60 @@ in sources."glob-parent-5.1.2" ]; }) + sources."color-convert-2.0.1" + sources."color-name-1.1.4" sources."commander-4.1.1" - sources."concat-map-0.0.1" sources."create-require-1.1.1" + sources."cross-spawn-7.0.3" sources."cssesc-3.0.0" sources."didyoumean-1.2.2" sources."diff-4.0.2" sources."dlv-1.1.3" + sources."eastasianwidth-0.2.0" + sources."emoji-regex-9.2.2" (sources."fast-glob-3.3.2" // { dependencies = [ sources."glob-parent-5.1.2" ]; }) - sources."fastq-1.15.0" + sources."fastq-1.16.0" sources."fill-range-7.0.1" - sources."fs.realpath-1.0.0" + sources."foreground-child-3.1.1" sources."fsevents-2.3.3" sources."function-bind-1.1.2" - sources."glob-7.1.6" + sources."glob-10.3.10" sources."glob-parent-6.0.2" sources."hasown-2.0.0" - sources."inflight-1.0.6" - sources."inherits-2.0.4" sources."is-binary-path-2.1.0" sources."is-core-module-2.13.1" sources."is-extglob-2.1.1" + sources."is-fullwidth-code-point-3.0.0" sources."is-glob-4.0.3" sources."is-number-7.0.0" + sources."isexe-2.0.0" + sources."jackspeak-2.3.6" sources."jiti-1.21.0" sources."lilconfig-2.1.0" sources."lines-and-columns-1.2.4" + sources."lru-cache-10.1.0" sources."make-error-1.3.6" sources."merge2-1.4.1" sources."micromatch-4.0.5" - sources."minimatch-3.1.2" + sources."minimatch-9.0.3" + sources."minipass-7.0.4" sources."mz-2.7.0" sources."nanoid-3.3.7" sources."normalize-path-3.0.0" sources."object-assign-4.1.1" sources."object-hash-3.0.0" - sources."once-1.4.0" - sources."path-is-absolute-1.0.1" + sources."path-key-3.1.1" sources."path-parse-1.0.7" + sources."path-scurry-1.10.1" sources."picocolors-1.0.0" sources."picomatch-2.3.1" sources."pify-2.3.0" sources."pirates-4.0.6" - sources."postcss-8.4.31" + sources."postcss-8.4.33" sources."postcss-import-15.1.0" sources."postcss-js-4.0.1" (sources."postcss-load-config-4.0.2" // { @@ -93249,7 +95102,7 @@ in ]; }) sources."postcss-nested-6.0.1" - sources."postcss-selector-parser-6.0.13" + sources."postcss-selector-parser-6.0.15" sources."postcss-value-parser-4.2.0" sources."queue-microtask-1.2.3" sources."read-cache-1.0.0" @@ -93257,24 +95110,49 @@ in sources."resolve-1.22.8" sources."reusify-1.0.4" sources."run-parallel-1.2.0" + sources."shebang-command-2.0.0" + sources."shebang-regex-3.0.0" + sources."signal-exit-4.1.0" sources."source-map-js-1.0.2" - sources."sucrase-3.34.0" + sources."string-width-5.1.2" + (sources."string-width-cjs-4.2.3" // { + dependencies = [ + sources."emoji-regex-8.0.0" + sources."strip-ansi-6.0.1" + ]; + }) + (sources."strip-ansi-7.1.0" // { + dependencies = [ + sources."ansi-regex-6.0.1" + ]; + }) + sources."strip-ansi-cjs-6.0.1" + sources."sucrase-3.35.0" sources."supports-preserve-symlinks-flag-1.0.0" sources."thenify-3.3.1" sources."thenify-all-1.6.0" sources."to-regex-range-5.0.1" sources."ts-interface-checker-0.1.13" - (sources."ts-node-10.9.1" // { + (sources."ts-node-10.9.2" // { dependencies = [ sources."arg-4.1.3" ]; }) sources."tslib-2.6.2" - sources."typescript-5.3.2" + sources."typescript-5.3.3" sources."undici-types-5.26.5" sources."util-deprecate-1.0.2" sources."v8-compile-cache-lib-3.0.1" - sources."wrappy-1.0.2" + sources."which-2.0.2" + sources."wrap-ansi-8.1.0" + (sources."wrap-ansi-cjs-7.0.0" // { + dependencies = [ + sources."ansi-styles-4.3.0" + sources."emoji-regex-8.0.0" + sources."string-width-4.2.3" + sources."strip-ansi-6.0.1" + ]; + }) sources."yaml-2.3.4" sources."yn-3.1.1" ]; @@ -93298,7 +95176,7 @@ in }; dependencies = [ sources."node-addon-api-4.3.0" - sources."node-gyp-build-4.7.0" + sources."node-gyp-build-4.8.0" sources."q-1.5.1" sources."usb-1.9.2" ]; @@ -93364,31 +95242,31 @@ in textlint = nodeEnv.buildNodePackage { name = "textlint"; packageName = "textlint"; - version = "13.4.0"; + version = "13.4.1"; src = fetchurl { - url = "https://registry.npmjs.org/textlint/-/textlint-13.4.0.tgz"; - sha512 = "Op3Tt6J7yOJY8hbYkU6Pakw2tb37SlyS1F/KAVNSKHSeW9Kp/GF+9O6HDmdaM8dhGldy2vVBhxm9/nlXTU1p0w=="; + url = "https://registry.npmjs.org/textlint/-/textlint-13.4.1.tgz"; + sha512 = "ev6XkQEUMWcW90hTHJKlvt23ca1AtmmK2iw4mazqKnSVz8PTSMg45NB68ht3ev92lIPD+8Wt4D6JxCInZkh4GQ=="; }; dependencies = [ sources."@aashutoshrathi/word-wrap-1.2.6" sources."@azu/format-text-1.0.2" sources."@azu/style-format-1.0.1" - sources."@textlint/ast-node-types-13.4.0" - sources."@textlint/ast-tester-13.4.0" - sources."@textlint/ast-traverse-13.4.0" - sources."@textlint/config-loader-13.4.0" - sources."@textlint/feature-flag-13.4.0" - sources."@textlint/fixer-formatter-13.4.0" - sources."@textlint/kernel-13.4.0" - sources."@textlint/linter-formatter-13.4.0" - sources."@textlint/markdown-to-ast-13.4.0" - sources."@textlint/module-interop-13.4.0" - sources."@textlint/source-code-fixer-13.4.0" - sources."@textlint/text-to-ast-13.4.0" - sources."@textlint/textlint-plugin-markdown-13.4.0" - sources."@textlint/textlint-plugin-text-13.4.0" - sources."@textlint/types-13.4.0" - sources."@textlint/utils-13.4.0" + sources."@textlint/ast-node-types-13.4.1" + sources."@textlint/ast-tester-13.4.1" + sources."@textlint/ast-traverse-13.4.1" + sources."@textlint/config-loader-13.4.1" + sources."@textlint/feature-flag-13.4.1" + sources."@textlint/fixer-formatter-13.4.1" + sources."@textlint/kernel-13.4.1" + sources."@textlint/linter-formatter-13.4.1" + sources."@textlint/markdown-to-ast-13.4.1" + sources."@textlint/module-interop-13.4.1" + sources."@textlint/source-code-fixer-13.4.1" + sources."@textlint/text-to-ast-13.4.1" + sources."@textlint/textlint-plugin-markdown-13.4.1" + sources."@textlint/textlint-plugin-text-13.4.1" + sources."@textlint/types-13.4.1" + sources."@textlint/utils-13.4.1" sources."@types/mdast-3.0.15" sources."@types/unist-2.0.10" sources."ajv-8.12.0" @@ -93547,7 +95425,7 @@ in sources."supports-preserve-symlinks-flag-1.0.0" sources."table-6.8.1" sources."text-table-0.2.0" - sources."traverse-0.6.7" + sources."traverse-0.6.8" sources."trough-1.0.5" sources."try-resolve-1.0.1" sources."type-check-0.4.0" @@ -93641,7 +95519,7 @@ in sha512 = "WdDWGMuwqvj2HzFi7qZ/kyMFEH0wu7FlwXItZZBsH67azzmigMih3X8xxr3Gw5SBqQ4SZoqM/KJErqQ1jSCCBA=="; }; dependencies = [ - sources."@babel/code-frame-7.23.4" + sources."@babel/code-frame-7.23.5" sources."@babel/helper-validator-identifier-7.22.20" sources."@babel/highlight-7.23.4" sources."@isaacs/cliui-8.0.2" @@ -93662,25 +95540,25 @@ in sources."@pnpm/npm-conf-2.2.2" sources."@sindresorhus/is-5.6.0" sources."@szmarczak/http-timer-5.0.1" - sources."@textlint/ast-node-types-13.4.0" + sources."@textlint/ast-node-types-13.4.1" sources."@types/acorn-4.0.6" sources."@types/concat-stream-2.0.3" sources."@types/debug-4.1.12" sources."@types/estree-1.0.5" sources."@types/estree-jsx-1.0.3" - sources."@types/hast-2.3.8" + sources."@types/hast-2.3.9" sources."@types/http-cache-semantics-4.0.4" sources."@types/is-empty-1.2.3" sources."@types/mdast-3.0.15" sources."@types/minimist-1.2.5" sources."@types/ms-0.7.34" sources."@types/nlcst-1.0.4" - sources."@types/node-18.18.11" + sources."@types/node-18.19.5" sources."@types/normalize-package-data-2.4.4" sources."@types/supports-color-8.1.3" sources."@types/unist-2.0.10" sources."abbrev-2.0.0" - sources."acorn-8.11.2" + sources."acorn-8.11.3" sources."acorn-jsx-5.3.2" sources."alex-11.0.1" (sources."ansi-align-3.0.1" // { @@ -93960,7 +95838,7 @@ in sources."path-key-3.1.1" (sources."path-scurry-1.10.1" // { dependencies = [ - sources."lru-cache-10.0.3" + sources."lru-cache-10.1.0" ]; }) sources."pause-stream-0.0.11" @@ -93973,7 +95851,7 @@ in sources."pump-chain-1.0.0" sources."pupa-3.1.0" sources."quick-lru-6.1.2" - sources."quotation-2.0.2" + sources."quotation-2.0.3" (sources."rc-1.2.8" // { dependencies = [ sources."ini-1.3.8" @@ -93981,7 +95859,7 @@ in }) (sources."read-package-json-fast-3.0.2" // { dependencies = [ - sources."json-parse-even-better-errors-3.0.0" + sources."json-parse-even-better-errors-3.0.1" ]; }) (sources."read-pkg-7.1.0" // { @@ -94063,7 +95941,7 @@ in sources."strip-json-comments-2.0.1" sources."structured-source-4.0.0" sources."supports-color-5.5.0" - (sources."textlint-rule-helper-2.3.0" // { + (sources."textlint-rule-helper-2.3.1" // { dependencies = [ sources."unist-util-is-4.1.0" sources."unist-util-visit-2.0.3" @@ -94238,7 +96116,7 @@ in sha512 = "gZMxUU+/O8QIchBQoo50QryknmMKahb2vBj89wVvk+Dhvp70nAJKSkpt2vjZVYBWCxpIKysQlwheBjrFZWpkfg=="; }; dependencies = [ - sources."@textlint/ast-node-types-13.4.0" + sources."@textlint/ast-node-types-13.4.1" sources."@types/unist-2.0.10" sources."bail-1.0.5" sources."boundary-2.0.0" @@ -94253,10 +96131,10 @@ in sources."parse5-5.1.1" sources."property-information-5.6.0" sources."rehype-parse-6.0.2" - sources."sentence-splitter-4.3.0" + sources."sentence-splitter-4.4.1" sources."space-separated-tokens-1.1.5" sources."structured-source-4.0.0" - sources."textlint-util-to-string-3.3.2" + sources."textlint-util-to-string-3.3.4" sources."trough-1.0.5" sources."unified-8.4.2" sources."unist-util-stringify-position-2.0.3" @@ -94278,13 +96156,13 @@ in textlint-rule-max-comma = nodeEnv.buildNodePackage { name = "textlint-rule-max-comma"; packageName = "textlint-rule-max-comma"; - version = "3.0.1"; + version = "4.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/textlint-rule-max-comma/-/textlint-rule-max-comma-3.0.1.tgz"; - sha512 = "VMht14U0+gxRhEnT3/Rfv7yUDF3YGhsSSODwXGnnicwe54Czs2CYALAZIlWA79R4LLqcYFc9pP1i8DeGWvaHeA=="; + url = "https://registry.npmjs.org/textlint-rule-max-comma/-/textlint-rule-max-comma-4.0.0.tgz"; + sha512 = "2vKKXNg1YuTqr9/FrHvOGEHFe+6lNSDtzuEv+KRB+tuaj++UNa/YPvyY34UdDYuHUSKNcYdto8GlIUhAJDW9WQ=="; }; dependencies = [ - sources."@textlint/ast-node-types-13.4.0" + sources."@textlint/ast-node-types-13.4.1" sources."@types/unist-2.0.10" sources."bail-1.0.5" sources."boundary-2.0.0" @@ -94299,10 +96177,10 @@ in sources."parse5-5.1.1" sources."property-information-5.6.0" sources."rehype-parse-6.0.2" - sources."sentence-splitter-4.3.0" + sources."sentence-splitter-5.0.0" sources."space-separated-tokens-1.1.5" sources."structured-source-4.0.0" - sources."textlint-util-to-string-3.3.2" + sources."textlint-util-to-string-3.3.4" sources."trough-1.0.5" sources."unified-8.4.2" sources."unist-util-stringify-position-2.0.3" @@ -94343,9 +96221,9 @@ in sources."sentence-splitter-3.2.3" sources."string_decoder-1.3.0" sources."structured-source-3.0.2" - (sources."textlint-rule-helper-2.3.0" // { + (sources."textlint-rule-helper-2.3.1" // { dependencies = [ - sources."@textlint/ast-node-types-13.4.0" + sources."@textlint/ast-node-types-13.4.1" sources."boundary-2.0.0" sources."structured-source-4.0.0" ]; @@ -94397,13 +96275,13 @@ in sha512 = "vP99cbTyapn+Hviom2doO3pJtjlhKlZvlHTf21zoB22CxJx2w3S7Ie169neB5U4Xsei+NodHf5tnwT933mO19A=="; }; dependencies = [ - sources."@textlint/ast-node-types-13.4.0" + sources."@textlint/ast-node-types-13.4.1" sources."@types/unist-2.0.10" sources."boundary-2.0.0" sources."lodash-4.17.21" sources."split-lines-2.1.0" sources."structured-source-4.0.0" - sources."textlint-rule-helper-2.3.0" + sources."textlint-rule-helper-2.3.1" sources."unist-util-is-4.1.0" sources."unist-util-visit-2.0.3" sources."unist-util-visit-parents-3.1.1" @@ -94427,13 +96305,13 @@ in sha512 = "wKiVhc2B9HP2MFU4x7ZDx+oM5u43ETpKWTLHKvdhPRZ0+davi4M8mFmkZVovDIMO7igsGjixikcvFmnCMg3kmQ=="; }; dependencies = [ - sources."@textlint/ast-node-types-13.4.0" + sources."@textlint/ast-node-types-13.4.1" sources."@types/unist-2.0.10" sources."boundary-2.0.0" sources."lodash-4.17.21" sources."strip-json-comments-3.1.1" sources."structured-source-4.0.0" - sources."textlint-rule-helper-2.3.0" + sources."textlint-rule-helper-2.3.1" sources."unist-util-is-4.1.0" sources."unist-util-visit-2.0.3" sources."unist-util-visit-parents-3.1.1" @@ -94499,7 +96377,7 @@ in sources."isarray-2.0.5" sources."object-inspect-1.13.1" sources."object-keys-1.1.1" - sources."object.assign-4.1.4" + sources."object.assign-4.1.5" sources."regexp.prototype.flags-1.5.1" sources."safe-array-concat-1.0.1" sources."safe-regex-test-1.0.0" @@ -94536,7 +96414,7 @@ in sha512 = "yvOJavJD+PgyUzvsoLDDzDtgCVBva/HNhEvsFnYVugrWz0qy2hr+/4B4wkzjro4wfPbwz20GQe5h13N4DeUEeA=="; }; dependencies = [ - sources."@textlint/ast-node-types-13.4.0" + sources."@textlint/ast-node-types-13.4.1" sources."@types/unist-2.0.10" sources."adverb-where-0.2.6" sources."boundary-2.0.0" @@ -94545,7 +96423,7 @@ in sources."no-cliches-0.3.6" sources."passive-voice-0.1.0" sources."structured-source-4.0.0" - sources."textlint-rule-helper-2.3.0" + sources."textlint-rule-helper-2.3.1" sources."too-wordy-0.3.6" sources."unist-util-is-4.1.0" sources."unist-util-visit-2.0.3" @@ -94587,7 +96465,7 @@ in sources."@types/cors-2.8.17" sources."@types/http-cache-semantics-4.0.4" sources."@types/keyv-3.1.4" - sources."@types/node-20.9.3" + sources."@types/node-20.10.7" sources."@types/responselike-1.0.3" sources."abbrev-1.1.1" sources."abstract-logging-2.0.1" @@ -94646,7 +96524,7 @@ in sources."content-type-1.0.5" sources."cookie-0.4.2" sources."cookie-signature-1.0.6" - sources."core-js-3.33.3" + sources."core-js-3.35.0" sources."core-util-is-1.0.2" sources."cors-2.8.5" sources."css-select-4.3.0" @@ -94842,7 +96720,7 @@ in sources."npmlog-6.0.2" ]; }) - sources."node-gyp-build-4.7.0" + sources."node-gyp-build-4.8.0" sources."nopt-5.0.0" sources."normalize-url-6.1.0" sources."npmlog-5.0.1" @@ -95078,7 +96956,7 @@ in sources."content-type-1.0.5" sources."cookie-0.4.0" sources."cookie-signature-1.0.6" - sources."core-js-3.33.3" + sources."core-js-3.35.0" sources."core-util-is-1.0.2" sources."css-select-1.2.0" sources."css-what-2.1.3" @@ -95259,7 +97137,7 @@ in ]; }) sources."negotiator-0.6.3" - sources."node-gyp-build-4.7.0" + sources."node-gyp-build-4.8.0" (sources."node-pre-gyp-0.11.0" // { dependencies = [ sources."semver-5.7.2" @@ -95677,7 +97555,7 @@ in sources."@types/cacheable-request-6.0.3" sources."@types/http-cache-semantics-4.0.4" sources."@types/keyv-3.1.4" - sources."@types/node-20.9.3" + sources."@types/node-20.10.7" sources."@types/responselike-1.0.3" sources."abbrev-1.1.1" sources."abstract-logging-2.0.1" @@ -95758,7 +97636,7 @@ in sources."content-type-1.0.5" sources."cookie-0.4.0" sources."cookie-signature-1.0.6" - sources."core-js-3.33.3" + sources."core-js-3.35.0" sources."core-util-is-1.0.2" sources."css-select-1.2.0" sources."css-what-2.1.3" @@ -95934,7 +97812,7 @@ in sources."tar-2.2.2" ]; }) - sources."node-gyp-build-4.7.0" + sources."node-gyp-build-4.8.0" (sources."node-pre-gyp-0.11.0" // { dependencies = [ sources."semver-5.7.2" @@ -96146,7 +98024,7 @@ in sources."@types/cacheable-request-6.0.3" sources."@types/http-cache-semantics-4.0.4" sources."@types/keyv-3.1.4" - sources."@types/node-20.9.3" + sources."@types/node-20.10.7" sources."@types/responselike-1.0.3" sources."abbrev-1.1.1" sources."abstract-logging-2.0.1" @@ -96227,7 +98105,7 @@ in sources."content-type-1.0.5" sources."cookie-0.4.0" sources."cookie-signature-1.0.6" - sources."core-js-3.33.3" + sources."core-js-3.35.0" sources."core-util-is-1.0.2" sources."css-select-1.2.0" sources."css-what-2.1.3" @@ -96403,7 +98281,7 @@ in sources."tar-2.2.2" ]; }) - sources."node-gyp-build-4.7.0" + sources."node-gyp-build-4.8.0" (sources."node-pre-gyp-0.11.0" // { dependencies = [ sources."semver-5.7.2" @@ -96729,10 +98607,10 @@ in thelounge-theme-mortified = nodeEnv.buildNodePackage { name = "thelounge-theme-mortified"; packageName = "thelounge-theme-mortified"; - version = "0.1.6"; + version = "0.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/thelounge-theme-mortified/-/thelounge-theme-mortified-0.1.6.tgz"; - sha512 = "5k7vJEyt1PstHo9rZi4flP9B4e1uC83KrneAi6uyI9R70uYCJtsqu36SD1V1NTpRdMGjAHcpK6ydbMai5fKN9A=="; + url = "https://registry.npmjs.org/thelounge-theme-mortified/-/thelounge-theme-mortified-0.2.0.tgz"; + sha512 = "EAZysq41Jx7Sq5bvNI8WtRbxto7MdkdnFO5smjlSB5wEKNLW1T1Dy56u2d452QBc7AzZ130q33P/a9tvCrtzYQ=="; }; buildInputs = globalBuildInputs; meta = { @@ -96999,10 +98877,10 @@ in tiddlywiki = nodeEnv.buildNodePackage { name = "tiddlywiki"; packageName = "tiddlywiki"; - version = "5.3.1"; + version = "5.3.3"; src = fetchurl { - url = "https://registry.npmjs.org/tiddlywiki/-/tiddlywiki-5.3.1.tgz"; - sha512 = "17uoTt8w3wvqaF1fqulHeeR86984N0eC8fgd0Ql1LIKgrHRu1+M3fBW8V/ikofU2s74xr6S1efREHaA2zyhe1w=="; + url = "https://registry.npmjs.org/tiddlywiki/-/tiddlywiki-5.3.3.tgz"; + sha512 = "PkgVfZNpFFHyMmfFw91igXOJn8Z7IWg3NGXOX5EBqJwzGNeYYOIUg4FqCNsWoqBece20HxtkDue/vTf2jDtdZQ=="; }; buildInputs = globalBuildInputs; meta = { @@ -97050,7 +98928,7 @@ in sources."supports-color-2.0.0" sources."temp-0.8.4" sources."tslib-1.14.1" - sources."typescript-5.3.2" + sources."typescript-5.3.3" sources."wordwrap-0.0.3" sources."wrappy-1.0.2" ]; @@ -97067,34 +98945,34 @@ in ts-node = nodeEnv.buildNodePackage { name = "ts-node"; packageName = "ts-node"; - version = "10.9.1"; + version = "10.9.2"; src = fetchurl { - url = "https://registry.npmjs.org/ts-node/-/ts-node-10.9.1.tgz"; - sha512 = "NtVysVPkxxrwFGUUxGYhfux8k78pQB3JqYBXlLRZgdGUqTO5wU/UyHop5p70iEbGhB7q5KmiZiU0Y3KlJrScEw=="; + url = "https://registry.npmjs.org/ts-node/-/ts-node-10.9.2.tgz"; + sha512 = "f0FFpIdcHgn8zcPSbf1dRevwt047YMnaiJM3u2w2RewrB+fob/zePZcrOyQoLMMO7aBIddLcQIEK5dYjkLnGrQ=="; }; dependencies = [ sources."@cspotcode/source-map-support-0.8.1" sources."@jridgewell/resolve-uri-3.1.1" sources."@jridgewell/sourcemap-codec-1.4.15" sources."@jridgewell/trace-mapping-0.3.9" - sources."@swc/core-1.3.99" + sources."@swc/core-1.3.102" sources."@swc/counter-0.1.2" sources."@swc/helpers-0.5.3" sources."@swc/types-0.1.5" - sources."@swc/wasm-1.3.99" + sources."@swc/wasm-1.3.102" sources."@tsconfig/node10-1.0.9" sources."@tsconfig/node12-1.0.11" sources."@tsconfig/node14-1.0.3" sources."@tsconfig/node16-1.0.4" - sources."@types/node-20.9.3" - sources."acorn-8.11.2" - sources."acorn-walk-8.3.0" + sources."@types/node-20.10.7" + sources."acorn-8.11.3" + sources."acorn-walk-8.3.1" sources."arg-4.1.3" sources."create-require-1.1.1" sources."diff-4.0.2" sources."make-error-1.3.6" sources."tslib-2.6.2" - sources."typescript-5.3.2" + sources."typescript-5.3.3" sources."undici-types-5.26.5" sources."v8-compile-cache-lib-3.0.1" sources."yn-3.1.1" @@ -97133,10 +99011,10 @@ in typescript-language-server = nodeEnv.buildNodePackage { name = "typescript-language-server"; packageName = "typescript-language-server"; - version = "4.1.2"; + version = "4.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/typescript-language-server/-/typescript-language-server-4.1.2.tgz"; - sha512 = "RmTQUvlWmQ2y0x7DbOQuxEHtozKlWuhw8NhuLT7zL90rBjmeqjAMD/DlkcoQbkt3CEMMuBwZC+1OYQelw16cFA=="; + url = "https://registry.npmjs.org/typescript-language-server/-/typescript-language-server-4.2.0.tgz"; + sha512 = "1yKDqKeWLTQkN4mN+CT84aBr7ckp6sNVb8DZg+eXl0TDl14edn6Yh1wPqPA1rQ4AGVJc02fYbXTFsklaVYy4Uw=="; }; buildInputs = globalBuildInputs; meta = { @@ -97192,7 +99070,7 @@ in sha512 = "QuiszzQwHu8OOUHJpe7sM4UcF8C1zmjpvVZNPca2NE/jW2QVLmQ0iSyujdza/+spOoMwVmPIrv0Ws3Ew3RJO/w=="; }; dependencies = [ - sources."@babel/code-frame-7.23.4" + sources."@babel/code-frame-7.23.5" sources."@babel/helper-validator-identifier-7.22.20" sources."@babel/highlight-7.23.4" sources."@isaacs/cliui-8.0.2" @@ -97203,7 +99081,7 @@ in sources."@types/debug-4.1.12" sources."@types/is-empty-1.2.3" sources."@types/ms-0.7.34" - sources."@types/node-20.9.3" + sources."@types/node-20.10.7" sources."@types/supports-color-8.1.3" sources."@types/unist-3.0.2" sources."@ungap/structured-clone-1.2.0" @@ -97245,11 +99123,11 @@ in sources."isexe-2.0.0" sources."jackspeak-2.3.6" sources."js-tokens-4.0.0" - sources."json-parse-even-better-errors-3.0.0" + sources."json-parse-even-better-errors-3.0.1" sources."lines-and-columns-2.0.4" sources."load-plugin-5.1.0" sources."locate-path-7.2.0" - sources."lru-cache-10.0.3" + sources."lru-cache-10.1.0" sources."minimatch-9.0.3" sources."minipass-7.0.4" sources."ms-2.1.2" @@ -97292,9 +99170,9 @@ in sources."type-fest-3.13.1" sources."typedarray-0.0.6" sources."undici-types-5.26.5" - (sources."unified-engine-11.1.1" // { + (sources."unified-engine-11.2.0" // { dependencies = [ - sources."@npmcli/config-8.0.2" + sources."@npmcli/config-8.0.3" sources."ci-info-4.0.0" sources."import-meta-resolve-4.0.0" sources."load-plugin-6.0.1" @@ -97481,11 +99359,11 @@ in sources."vega-regression-1.2.0" sources."vega-runtime-6.1.4" sources."vega-scale-7.3.1" - sources."vega-scenegraph-4.11.1" + sources."vega-scenegraph-4.11.2" sources."vega-selections-5.4.2" sources."vega-statistics-1.9.0" sources."vega-time-2.1.1" - sources."vega-transforms-4.11.0" + sources."vega-transforms-4.11.1" sources."vega-typings-1.0.1" sources."vega-util-1.17.2" sources."vega-view-5.11.1" @@ -97570,7 +99448,7 @@ in }) sources."tr46-0.0.3" sources."tslib-2.6.2" - sources."vega-5.26.1" + sources."vega-5.27.0" sources."vega-canvas-1.2.7" sources."vega-crossfilter-4.1.1" sources."vega-dataflow-5.7.5" @@ -97589,14 +99467,14 @@ in sources."vega-regression-1.2.0" sources."vega-runtime-6.1.4" sources."vega-scale-7.3.1" - sources."vega-scenegraph-4.11.1" + sources."vega-scenegraph-4.11.2" sources."vega-selections-5.4.2" sources."vega-statistics-1.9.0" sources."vega-time-2.1.1" - sources."vega-transforms-4.11.0" - sources."vega-typings-1.0.1" + sources."vega-transforms-4.11.1" + sources."vega-typings-1.1.0" sources."vega-util-1.17.2" - sources."vega-view-5.11.1" + sources."vega-view-5.12.0" sources."vega-view-transforms-4.5.9" sources."vega-voronoi-4.2.2" sources."vega-wordcloud-4.1.4" @@ -97620,10 +99498,10 @@ in vercel = nodeEnv.buildNodePackage { name = "vercel"; packageName = "vercel"; - version = "32.5.5"; + version = "33.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/vercel/-/vercel-32.5.5.tgz"; - sha512 = "243EMaVsFyqrbbiD7kNfGTc+AYQ86k8PaQzFIELFzKRV7cbGWUGqmPiHNZR4XZlHd96S3FHGqWz5HNtzZKQNEQ=="; + url = "https://registry.npmjs.org/vercel/-/vercel-33.0.2.tgz"; + sha512 = "jcXl6PvyMb4Z8rk3ossj7yxi1gLKF8QtH9ytMWxFSkaBf5BSiaUduDZOwkCm4gTGE5gQ4NASa8yYpvOaQELyvw=="; }; dependencies = [ sources."@cspotcode/source-map-support-0.8.1" @@ -97660,11 +99538,11 @@ in sources."@nodelib/fs.walk-1.2.8" sources."@rollup/pluginutils-4.2.1" sources."@sinclair/typebox-0.25.24" - sources."@swc/core-1.3.99" + sources."@swc/core-1.3.102" sources."@swc/counter-0.1.2" sources."@swc/helpers-0.5.3" sources."@swc/types-0.1.5" - sources."@swc/wasm-1.3.99" + sources."@swc/wasm-1.3.102" sources."@tootallnate/once-2.0.0" (sources."@ts-morph/common-0.11.1" // { dependencies = [ @@ -97677,22 +99555,22 @@ in sources."@tsconfig/node16-1.0.4" sources."@types/json-schema-7.0.15" sources."@types/node-14.18.33" - sources."@vercel/build-utils-7.2.5" + sources."@vercel/build-utils-7.4.1" sources."@vercel/error-utils-2.0.2" sources."@vercel/fun-1.1.0" sources."@vercel/gatsby-plugin-vercel-analytics-1.0.11" - (sources."@vercel/gatsby-plugin-vercel-builder-2.0.11" // { + (sources."@vercel/gatsby-plugin-vercel-builder-2.0.14" // { dependencies = [ sources."fs-extra-11.1.0" sources."jsonfile-6.1.0" sources."universalify-2.0.1" ]; }) - sources."@vercel/go-3.0.3" + sources."@vercel/go-3.0.5" sources."@vercel/hydrogen-1.0.1" - sources."@vercel/next-4.0.14" - sources."@vercel/nft-0.24.2" - (sources."@vercel/node-3.0.11" // { + sources."@vercel/next-4.0.17" + sources."@vercel/nft-0.26.2" + (sources."@vercel/node-3.0.15" // { dependencies = [ sources."async-listen-3.0.0" sources."node-fetch-2.6.9" @@ -97700,12 +99578,12 @@ in ]; }) sources."@vercel/python-4.1.0" - (sources."@vercel/redwood-2.0.5" // { + (sources."@vercel/redwood-2.0.6" // { dependencies = [ sources."semver-6.3.1" ]; }) - sources."@vercel/remix-builder-2.0.11" + sources."@vercel/remix-builder-2.0.16" (sources."@vercel/routing-utils-3.1.0" // { dependencies = [ sources."ajv-6.12.6" @@ -97713,12 +99591,13 @@ in sources."path-to-regexp-6.1.0" ]; }) - sources."@vercel/ruby-2.0.2" - sources."@vercel/static-build-2.0.12" + sources."@vercel/ruby-2.0.4" + sources."@vercel/static-build-2.0.16" sources."@vercel/static-config-3.0.0" sources."abbrev-1.1.1" - sources."acorn-8.11.2" - sources."acorn-walk-8.3.0" + sources."acorn-8.11.3" + sources."acorn-import-attributes-1.9.2" + sources."acorn-walk-8.3.1" sources."agent-base-6.0.2" sources."ajv-8.6.3" sources."ansi-regex-5.0.1" @@ -97789,11 +99668,10 @@ in sources."etag-1.8.1" sources."events-intercept-2.0.0" sources."execa-3.2.0" - sources."exit-hook-2.2.1" sources."fast-deep-equal-3.1.3" sources."fast-glob-3.3.2" sources."fast-json-stable-stringify-2.1.0" - sources."fastq-1.15.0" + sources."fastq-1.16.0" sources."fd-slicer-1.1.0" sources."file-uri-to-path-1.0.0" sources."fill-range-7.0.1" @@ -97849,7 +99727,7 @@ in sources."mri-1.2.0" sources."ms-2.1.1" sources."node-fetch-2.6.7" - sources."node-gyp-build-4.7.0" + sources."node-gyp-build-4.8.0" sources."nopt-5.0.0" sources."normalize-path-3.0.0" sources."npm-run-path-4.0.1" @@ -97982,7 +99860,7 @@ in }; dependencies = [ sources."@aashutoshrathi/word-wrap-1.2.6" - (sources."@babel/code-frame-7.23.4" // { + (sources."@babel/code-frame-7.23.5" // { dependencies = [ sources."ansi-styles-3.2.1" sources."chalk-2.4.2" @@ -98007,8 +99885,8 @@ in }) sources."@eslint-community/eslint-utils-4.4.0" sources."@eslint-community/regexpp-4.10.0" - sources."@eslint/eslintrc-2.1.3" - sources."@eslint/js-8.54.0" + sources."@eslint/eslintrc-2.1.4" + sources."@eslint/js-8.56.0" sources."@humanwhocodes/config-array-0.11.13" sources."@humanwhocodes/module-importer-1.0.1" sources."@humanwhocodes/object-schema-2.0.1" @@ -98016,7 +99894,7 @@ in sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" sources."@ungap/structured-clone-1.2.0" - sources."acorn-8.11.2" + sources."acorn-8.11.3" sources."acorn-jsx-5.3.2" sources."ajv-6.12.6" sources."ansi-regex-5.0.1" @@ -98042,8 +99920,8 @@ in sources."diff-4.0.2" sources."doctrine-3.0.0" sources."escape-string-regexp-4.0.0" - sources."eslint-8.54.0" - sources."eslint-plugin-vue-9.18.1" + sources."eslint-8.56.0" + sources."eslint-plugin-vue-9.19.2" sources."eslint-scope-7.2.2" sources."eslint-visitor-keys-3.4.3" sources."espree-9.6.1" @@ -98055,7 +99933,7 @@ in sources."fast-deep-equal-3.1.3" sources."fast-json-stable-stringify-2.1.0" sources."fast-levenshtein-2.0.6" - sources."fastq-1.15.0" + sources."fastq-1.16.0" sources."file-entry-cache-6.0.1" sources."find-up-5.0.0" sources."flat-cache-3.2.0" @@ -98065,7 +99943,7 @@ in sources."get-intrinsic-1.2.2" sources."glob-7.2.3" sources."glob-parent-6.0.2" - sources."globals-13.23.0" + sources."globals-13.24.0" sources."gopd-1.0.1" sources."graphemer-1.4.0" sources."has-flag-4.0.0" @@ -98117,7 +99995,7 @@ in sources."path-is-absolute-1.0.1" sources."path-key-3.1.1" sources."path-parse-1.0.7" - sources."postcss-selector-parser-6.0.13" + sources."postcss-selector-parser-6.0.15" sources."prelude-ls-1.2.1" sources."prettier-2.8.8" sources."pug-error-2.0.0" @@ -98347,9 +100225,9 @@ in sha512 = "EwAUg6706mBujMLbb4Czhe9Ax5Dw3x64t/X2hn+vIVvVexAANSifVg3yB7ILZmeRSGmv9uYo6kL5J1c/DiGdaw=="; }; dependencies = [ - (sources."@babel/runtime-7.23.4" // { + (sources."@babel/runtime-7.23.7" // { dependencies = [ - sources."regenerator-runtime-0.14.0" + sources."regenerator-runtime-0.14.1" ]; }) sources."@jimp/bmp-0.16.13" @@ -98421,7 +100299,7 @@ in sources."estraverse-5.3.0" sources."exif-parser-0.1.12" sources."file-type-16.5.4" - sources."fs-extra-11.1.1" + sources."fs-extra-11.2.0" sources."get-caller-file-2.0.5" sources."gifwrap-0.9.4" sources."global-4.4.0" @@ -98471,7 +100349,7 @@ in sources."universalify-2.0.1" sources."utif-2.0.1" sources."util-deprecate-1.0.2" - sources."wavedrom-3.3.0" + sources."wavedrom-3.4.0" sources."wrap-ansi-7.0.0" sources."xhr-2.6.0" sources."xml-parse-from-string-1.0.1" @@ -98507,11 +100385,11 @@ in sources."@jridgewell/source-map-0.3.5" sources."@jridgewell/sourcemap-codec-1.4.15" sources."@jridgewell/trace-mapping-0.3.20" - sources."@types/eslint-8.44.7" + sources."@types/eslint-8.56.1" sources."@types/eslint-scope-3.7.7" sources."@types/estree-1.0.5" sources."@types/json-schema-7.0.15" - sources."@types/node-20.9.3" + sources."@types/node-20.10.7" sources."@webassemblyjs/ast-1.11.6" sources."@webassemblyjs/floating-point-hex-parser-1.11.6" sources."@webassemblyjs/helper-api-error-1.11.6" @@ -98529,16 +100407,16 @@ in sources."@webassemblyjs/wast-printer-1.11.6" sources."@xtuc/ieee754-1.2.0" sources."@xtuc/long-4.2.2" - sources."acorn-8.11.2" + sources."acorn-8.11.3" sources."acorn-import-assertions-1.9.0" sources."ajv-6.12.6" sources."ajv-keywords-3.5.2" - sources."browserslist-4.22.1" + sources."browserslist-4.22.2" sources."buffer-from-1.1.2" - sources."caniuse-lite-1.0.30001563" + sources."caniuse-lite-1.0.30001576" sources."chrome-trace-event-1.0.3" sources."commander-2.20.3" - sources."electron-to-chromium-1.4.589" + sources."electron-to-chromium-1.4.623" sources."enhanced-resolve-5.15.0" sources."es-module-lexer-1.4.1" sources."escalade-3.1.1" @@ -98563,7 +100441,7 @@ in sources."mime-db-1.52.0" sources."mime-types-2.1.35" sources."neo-async-2.6.2" - sources."node-releases-2.0.13" + sources."node-releases-2.0.14" sources."picocolors-1.0.0" sources."punycode-2.3.1" sources."randombytes-2.1.0" @@ -98574,8 +100452,8 @@ in sources."source-map-support-0.5.21" sources."supports-color-8.1.1" sources."tapable-2.2.1" - sources."terser-5.24.0" - sources."terser-webpack-plugin-5.3.9" + sources."terser-5.26.0" + sources."terser-webpack-plugin-5.3.10" sources."undici-types-5.26.5" sources."update-browserslist-db-1.0.13" sources."uri-js-4.4.1" @@ -98609,11 +100487,11 @@ in sources."@jridgewell/source-map-0.3.5" sources."@jridgewell/sourcemap-codec-1.4.15" sources."@jridgewell/trace-mapping-0.3.20" - sources."@types/eslint-8.44.7" + sources."@types/eslint-8.56.1" sources."@types/eslint-scope-3.7.7" sources."@types/estree-1.0.5" sources."@types/json-schema-7.0.15" - sources."@types/node-20.9.3" + sources."@types/node-20.10.7" sources."@webassemblyjs/ast-1.11.6" sources."@webassemblyjs/floating-point-hex-parser-1.11.6" sources."@webassemblyjs/helper-api-error-1.11.6" @@ -98634,19 +100512,19 @@ in sources."@webpack-cli/serve-2.0.5" sources."@xtuc/ieee754-1.2.0" sources."@xtuc/long-4.2.2" - sources."acorn-8.11.2" + sources."acorn-8.11.3" sources."acorn-import-assertions-1.9.0" sources."ajv-6.12.6" sources."ajv-keywords-3.5.2" - sources."browserslist-4.22.1" + sources."browserslist-4.22.2" sources."buffer-from-1.1.2" - sources."caniuse-lite-1.0.30001563" + sources."caniuse-lite-1.0.30001576" sources."chrome-trace-event-1.0.3" sources."clone-deep-4.0.1" sources."colorette-2.0.20" sources."commander-10.0.1" sources."cross-spawn-7.0.3" - sources."electron-to-chromium-1.4.589" + sources."electron-to-chromium-1.4.623" sources."enhanced-resolve-5.15.0" sources."envinfo-7.11.0" sources."es-module-lexer-1.4.1" @@ -98685,7 +100563,7 @@ in sources."mime-db-1.52.0" sources."mime-types-2.1.35" sources."neo-async-2.6.2" - sources."node-releases-2.0.13" + sources."node-releases-2.0.14" sources."p-limit-2.3.0" sources."p-locate-4.1.0" sources."p-try-2.2.0" @@ -98711,12 +100589,12 @@ in sources."supports-color-8.1.1" sources."supports-preserve-symlinks-flag-1.0.0" sources."tapable-2.2.1" - (sources."terser-5.24.0" // { + (sources."terser-5.26.0" // { dependencies = [ sources."commander-2.20.3" ]; }) - sources."terser-webpack-plugin-5.3.9" + sources."terser-webpack-plugin-5.3.10" sources."undici-types-5.26.5" sources."update-browserslist-db-1.0.13" sources."uri-js-4.4.1" @@ -98758,7 +100636,7 @@ in sources."@types/bonjour-3.5.13" sources."@types/connect-3.4.38" sources."@types/connect-history-api-fallback-1.5.4" - sources."@types/eslint-8.44.7" + sources."@types/eslint-8.56.1" sources."@types/eslint-scope-3.7.7" sources."@types/estree-1.0.5" sources."@types/express-4.17.21" @@ -98767,9 +100645,9 @@ in sources."@types/http-proxy-1.17.14" sources."@types/json-schema-7.0.15" sources."@types/mime-1.3.5" - sources."@types/node-20.9.3" - sources."@types/node-forge-1.3.10" - sources."@types/qs-6.9.10" + sources."@types/node-20.10.7" + sources."@types/node-forge-1.3.11" + sources."@types/qs-6.9.11" sources."@types/range-parser-1.2.7" sources."@types/retry-0.12.0" sources."@types/send-0.17.4" @@ -98795,14 +100673,14 @@ in sources."@xtuc/ieee754-1.2.0" sources."@xtuc/long-4.2.2" sources."accepts-1.3.8" - sources."acorn-8.11.2" + sources."acorn-8.11.3" sources."acorn-import-assertions-1.9.0" sources."ajv-8.12.0" sources."ajv-formats-2.1.1" sources."ajv-keywords-5.1.0" sources."ansi-html-community-0.0.8" sources."anymatch-3.1.3" - sources."array-flatten-2.1.2" + sources."array-flatten-1.1.1" sources."balanced-match-1.0.2" sources."batch-0.6.1" sources."binary-extensions-2.2.0" @@ -98811,15 +100689,15 @@ in sources."bytes-3.1.2" ]; }) - sources."bonjour-service-1.1.1" + sources."bonjour-service-1.2.0" sources."brace-expansion-1.1.11" sources."braces-3.0.2" - sources."browserslist-4.22.1" + sources."browserslist-4.22.2" sources."buffer-from-1.1.2" sources."bufferutil-4.0.8" sources."bytes-3.0.0" sources."call-bind-1.0.5" - sources."caniuse-lite-1.0.30001563" + sources."caniuse-lite-1.0.30001576" sources."chokidar-3.5.3" sources."chrome-trace-event-1.0.3" sources."colorette-2.0.20" @@ -98845,10 +100723,9 @@ in sources."depd-2.0.0" sources."destroy-1.2.0" sources."detect-node-2.1.0" - sources."dns-equal-1.0.0" sources."dns-packet-5.6.1" sources."ee-first-1.1.1" - sources."electron-to-chromium-1.4.589" + sources."electron-to-chromium-1.4.623" sources."encodeurl-1.0.2" sources."enhanced-resolve-5.15.0" sources."es-module-lexer-1.4.1" @@ -98867,7 +100744,6 @@ in sources."execa-5.1.1" (sources."express-4.18.2" // { dependencies = [ - sources."array-flatten-1.1.1" sources."safe-buffer-5.2.1" ]; }) @@ -98876,7 +100752,7 @@ in sources."faye-websocket-0.11.4" sources."fill-range-7.0.1" sources."finalhandler-1.2.0" - sources."follow-redirects-1.15.3" + sources."follow-redirects-1.15.4" sources."forwarded-0.2.0" sources."fresh-0.5.2" sources."fs-monkey-1.0.5" @@ -98944,8 +100820,8 @@ in sources."negotiator-0.6.3" sources."neo-async-2.6.2" sources."node-forge-1.3.1" - sources."node-gyp-build-4.7.0" - sources."node-releases-2.0.13" + sources."node-gyp-build-4.8.0" + sources."node-releases-2.0.14" sources."normalize-path-3.0.0" sources."npm-run-path-4.0.1" sources."object-inspect-1.13.1" @@ -99031,8 +100907,8 @@ in sources."strip-final-newline-2.0.0" sources."supports-color-8.1.1" sources."tapable-2.2.1" - sources."terser-5.24.0" - (sources."terser-webpack-plugin-5.3.9" // { + sources."terser-5.26.0" + (sources."terser-webpack-plugin-5.3.10" // { dependencies = [ sources."ajv-6.12.6" sources."ajv-keywords-3.5.2" @@ -99069,7 +100945,7 @@ in sources."websocket-extensions-0.1.4" sources."which-2.0.2" sources."wrappy-1.0.2" - sources."ws-8.14.2" + sources."ws-8.16.0" ]; buildInputs = globalBuildInputs; meta = { @@ -99099,11 +100975,11 @@ in sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" - sources."@types/eslint-8.44.7" + sources."@types/eslint-8.56.1" sources."@types/eslint-scope-3.7.7" sources."@types/estree-1.0.5" sources."@types/json-schema-7.0.15" - sources."@types/node-20.9.3" + sources."@types/node-20.10.7" sources."@webassemblyjs/ast-1.11.6" sources."@webassemblyjs/floating-point-hex-parser-1.11.6" sources."@webassemblyjs/helper-api-error-1.11.6" @@ -99121,19 +100997,19 @@ in sources."@webassemblyjs/wast-printer-1.11.6" sources."@xtuc/ieee754-1.2.0" sources."@xtuc/long-4.2.2" - sources."acorn-8.11.2" + sources."acorn-8.11.3" sources."acorn-import-assertions-1.9.0" sources."ajv-8.12.0" sources."ajv-formats-2.1.1" sources."ajv-keywords-5.1.0" sources."braces-3.0.2" - sources."browserslist-4.22.1" + sources."browserslist-4.22.2" sources."buffer-from-1.1.2" - sources."caniuse-lite-1.0.30001563" + sources."caniuse-lite-1.0.30001576" sources."chrome-trace-event-1.0.3" sources."commander-2.20.3" sources."dir-glob-3.0.1" - sources."electron-to-chromium-1.4.589" + sources."electron-to-chromium-1.4.623" sources."enhanced-resolve-5.15.0" sources."es-module-lexer-1.4.1" sources."escalade-3.1.1" @@ -99152,7 +101028,7 @@ in ]; }) sources."fast-json-stable-stringify-2.1.0" - sources."fastq-1.15.0" + sources."fastq-1.16.0" sources."fill-range-7.0.1" sources."glob-parent-6.0.2" sources."glob-to-regexp-0.4.1" @@ -99173,7 +101049,7 @@ in sources."mime-db-1.52.0" sources."mime-types-2.1.35" sources."neo-async-2.6.2" - sources."node-releases-2.0.13" + sources."node-releases-2.0.14" sources."normalize-path-3.0.0" sources."path-type-4.0.0" sources."picocolors-1.0.0" @@ -99192,8 +101068,8 @@ in sources."source-map-support-0.5.21" sources."supports-color-8.1.1" sources."tapable-2.2.1" - sources."terser-5.24.0" - (sources."terser-webpack-plugin-5.3.9" // { + sources."terser-5.26.0" + (sources."terser-webpack-plugin-5.3.10" // { dependencies = [ sources."ajv-6.12.6" sources."ajv-keywords-3.5.2" @@ -99247,7 +101123,7 @@ in sources."@protobufjs/pool-1.1.0" sources."@protobufjs/utf8-1.1.0" sources."@types/long-4.0.2" - sources."@types/node-20.9.3" + sources."@types/node-20.10.7" sources."@webtorrent/http-node-1.3.0" sources."addr-to-ip-port-1.5.4" sources."airplay-js-0.3.0" @@ -99259,7 +101135,7 @@ in sources."bencode-2.0.3" sources."bep53-range-1.1.1" sources."binary-search-1.3.6" - sources."bitfield-4.1.0" + sources."bitfield-4.2.0" (sources."bittorrent-dht-10.0.7" // { dependencies = [ sources."debug-4.3.4" @@ -99336,7 +101212,7 @@ in ]; }) sources."cli-cursor-3.1.0" - sources."cli-spinners-2.9.1" + sources."cli-spinners-2.9.2" sources."cli-width-3.0.0" (sources."cliui-8.0.1" // { dependencies = [ @@ -99380,7 +101256,7 @@ in sources."external-editor-3.1.0" sources."fast-blob-stream-1.1.1" sources."fast-fifo-1.3.2" - sources."fast-readable-async-iterator-1.1.1" + sources."fast-readable-async-iterator-1.1.2" sources."figures-3.2.0" sources."freelist-1.0.3" (sources."fs-chunk-store-3.0.1" // { @@ -99448,7 +101324,7 @@ in sources."mimic-response-1.0.1" sources."minimist-1.2.8" sources."mkdirp-classic-0.5.3" - sources."moment-2.29.4" + sources."moment-2.30.1" sources."mp4-box-encoding-1.4.1" (sources."mp4-stream-3.1.3" // { dependencies = [ @@ -99466,7 +101342,7 @@ in sources."netmask-2.0.2" sources."network-address-1.1.2" sources."next-event-1.0.0" - sources."node-gyp-build-4.7.0" + sources."node-gyp-build-4.8.0" sources."node-ssdp-2.9.1" sources."nodebmc-0.0.7" sources."on-finished-2.4.1" @@ -99558,7 +101434,7 @@ in sources."stream-to-blob-2.0.1" sources."stream-to-blob-url-3.0.2" sources."stream-with-known-length-to-buffer-1.0.4" - sources."streamx-2.15.5" + sources."streamx-2.15.6" sources."string-width-4.2.3" sources."string2compact-1.3.2" sources."string_decoder-1.1.1" @@ -99635,58 +101511,17 @@ in bypassCache = true; reconstructLock = true; }; - "@withgraphite/graphite-cli" = nodeEnv.buildNodePackage { - name = "_at_withgraphite_slash_graphite-cli"; - packageName = "@withgraphite/graphite-cli"; - version = "1.0.9"; - src = fetchurl { - url = "https://registry.npmjs.org/@withgraphite/graphite-cli/-/graphite-cli-1.0.9.tgz"; - sha512 = "RQj9MouC+o746pXW7p9IvYg2iehYQsd1xxi42BCR5MvSEPf7TQNmmAuxDsB1pthkL40e+bXktitXUtRFeKg/9g=="; - }; - dependencies = [ - sources."ansi-regex-5.0.1" - sources."ansi-styles-4.3.0" - sources."bufferutil-4.0.8" - sources."chalk-4.1.2" - sources."cliui-8.0.1" - sources."color-convert-2.0.1" - sources."color-name-1.1.4" - sources."emoji-regex-8.0.0" - sources."escalade-3.1.1" - sources."get-caller-file-2.0.5" - sources."has-flag-4.0.0" - sources."is-fullwidth-code-point-3.0.0" - sources."node-gyp-build-4.7.0" - sources."require-directory-2.1.1" - sources."string-width-4.2.3" - sources."strip-ansi-6.0.1" - sources."supports-color-7.2.0" - sources."utf-8-validate-6.0.3" - sources."wrap-ansi-7.0.0" - sources."ws-8.14.2" - sources."y18n-5.0.8" - sources."yargs-17.7.2" - sources."yargs-parser-21.1.1" - ]; - buildInputs = globalBuildInputs; - meta = { - homepage = "https://github.com/withgraphite/graphite-cli"; - license = "None"; - }; - production = true; - bypassCache = true; - reconstructLock = true; - }; wrangler = nodeEnv.buildNodePackage { name = "wrangler"; packageName = "wrangler"; - version = "3.16.0"; + version = "3.22.3"; src = fetchurl { - url = "https://registry.npmjs.org/wrangler/-/wrangler-3.16.0.tgz"; - sha512 = "MIx35sSdFKE3hnfWB6xWUnrt3OiyKK+PQnc9kFLjksLESX0tLmEk1gdvThYHliY90kkelS+nbH48SUGTFAI5BA=="; + url = "https://registry.npmjs.org/wrangler/-/wrangler-3.22.3.tgz"; + sha512 = "EhGEQLoMcQm71v6XrtnKfMG2B8BTM7RxhoS9iWIkc1hc3l9cOWyoN0cJnoBqcGTgtQk5V7+cRECTfwh08IEjBQ=="; }; dependencies = [ sources."@cloudflare/kv-asset-handler-0.2.0" + sources."@cspotcode/source-map-support-0.8.1" sources."@esbuild-plugins/node-globals-polyfill-0.2.3" sources."@esbuild-plugins/node-modules-polyfill-0.2.2" sources."@esbuild/android-arm-0.17.19" @@ -99712,16 +101547,18 @@ in sources."@esbuild/win32-ia32-0.17.19" sources."@esbuild/win32-x64-0.17.19" sources."@fastify/busboy-2.1.0" - sources."@types/node-20.9.3" - sources."@types/node-forge-1.3.10" - sources."acorn-8.11.2" - sources."acorn-walk-8.3.0" + sources."@jridgewell/resolve-uri-3.1.1" + sources."@jridgewell/sourcemap-codec-1.4.15" + sources."@jridgewell/trace-mapping-0.3.9" + sources."@types/node-20.10.7" + sources."@types/node-forge-1.3.11" + sources."acorn-8.11.3" + sources."acorn-walk-8.3.1" sources."anymatch-3.1.3" sources."as-table-1.0.55" sources."binary-extensions-2.2.0" sources."blake3-wasm-2.1.5" sources."braces-3.0.2" - sources."buffer-from-1.1.2" sources."bufferutil-4.0.8" sources."capnp-ts-0.7.0" sources."chokidar-3.5.3" @@ -99743,12 +101580,12 @@ in sources."is-number-7.0.0" sources."magic-string-0.25.9" sources."mime-3.0.0" - sources."miniflare-3.20231030.0" + sources."miniflare-3.20231218.1" sources."ms-2.1.2" sources."mustache-4.2.0" sources."nanoid-3.3.7" sources."node-forge-1.3.1" - sources."node-gyp-build-4.7.0" + sources."node-gyp-build-4.8.0" sources."normalize-path-3.0.0" sources."path-to-regexp-6.2.1" sources."picomatch-2.3.1" @@ -99760,17 +101597,16 @@ in sources."rollup-pluginutils-2.8.2" sources."selfsigned-2.4.1" sources."source-map-0.6.1" - sources."source-map-support-0.5.21" sources."sourcemap-codec-1.4.8" sources."stacktracey-2.1.8" sources."stoppable-1.1.0" sources."to-regex-range-5.0.1" sources."tslib-2.6.2" - sources."undici-5.27.2" + sources."undici-5.28.2" sources."undici-types-5.26.5" sources."utf-8-validate-6.0.3" - sources."workerd-1.20231030.0" - sources."ws-8.14.2" + sources."workerd-1.20231218.0" + sources."ws-8.16.0" sources."xxhash-wasm-1.0.2" sources."youch-3.3.3" sources."zod-3.22.4" diff --git a/pkgs/development/node-packages/overrides.nix b/pkgs/development/node-packages/overrides.nix index 68f95a2f3b029..f49f09126e428 100644 --- a/pkgs/development/node-packages/overrides.nix +++ b/pkgs/development/node-packages/overrides.nix @@ -72,23 +72,6 @@ final: prev: { ''; }; - - graphite-cli = prev."@withgraphite/graphite-cli".override (old: { - name = "graphite-cli"; - nativeBuildInputs = with pkgs; [ installShellFiles pkg-config ]; - buildInputs = with pkgs; [ cairo pango pixman ]; - # 'gt completion' auto-detects zshell from environment variables: - # https://github.com/yargs/yargs/blob/2b6ba3139396b2e623aed404293f467f16590039/lib/completion.ts#L45 - postInstall = '' - installShellCompletion --cmd gt \ - --bash <($out/bin/gt completion) \ - --zsh <(ZSH_NAME=zsh $out/bin/gt completion) - ''; - meta = old.meta // { - license = lib.licenses.unfree; # no license specified - }; - }); - graphql-language-service-cli = prev.graphql-language-service-cli.override { nativeBuildInputs = [ pkgs.buildPackages.makeWrapper ]; postInstall = '' @@ -400,9 +383,10 @@ final: prev: { }; }; - volar = final."@volar/vue-language-server".override { + volar = final."@volar/vue-language-server".override ({ meta, ... }: { name = "volar"; - }; + meta = meta // { mainProgram = "vue-language-server"; }; + }); wavedrom-cli = prev.wavedrom-cli.override { nativeBuildInputs = [ pkgs.pkg-config final.node-pre-gyp ]; diff --git a/pkgs/development/ocaml-modules/cmarkit/default.nix b/pkgs/development/ocaml-modules/cmarkit/default.nix index ce6d98064a6ba..0a36ea196d477 100644 --- a/pkgs/development/ocaml-modules/cmarkit/default.nix +++ b/pkgs/development/ocaml-modules/cmarkit/default.nix @@ -14,11 +14,11 @@ else stdenv.mkDerivation rec { pname = "cmarkit"; - version = "0.2.0"; + version = "0.3.0"; src = fetchurl { url = "https://erratique.ch/software/cmarkit/releases/cmarkit-${version}.tbz"; - hash = "sha256-86RuGB5pLbw/ThPGz9+qLaZRH7xvxbYrZWFLLIkc5Mk="; + hash = "sha256-RouM5iU7VeTT0+4yhBgdEmxROeP/X31iqDjd1VI7z5c="; }; nativeBuildInputs = [ diff --git a/pkgs/development/ocaml-modules/containers/default.nix b/pkgs/development/ocaml-modules/containers/default.nix index ee3d7045d5656..654e86ab15175 100644 --- a/pkgs/development/ocaml-modules/containers/default.nix +++ b/pkgs/development/ocaml-modules/containers/default.nix @@ -5,14 +5,16 @@ }: buildDunePackage rec { - version = "3.12"; + version = "3.13.1"; pname = "containers"; + minimalOCamlVersion = "4.08"; + src = fetchFromGitHub { owner = "c-cube"; repo = "ocaml-containers"; rev = "v${version}"; - hash = "sha256-15Wd6k/NvjAvTmxlPlZPClODBtFXM6FG3VxniC66u88="; + hash = "sha256-jkXh/dBRotWXvA77M/+tm39qsCiBsH/HSs+Y9D9QCek="; }; buildInputs = [ dune-configurator ]; diff --git a/pkgs/development/ocaml-modules/domain-local-await/default.nix b/pkgs/development/ocaml-modules/domain-local-await/default.nix index e1f11a3167664..a3ed0bcc3ed65 100644 --- a/pkgs/development/ocaml-modules/domain-local-await/default.nix +++ b/pkgs/development/ocaml-modules/domain-local-await/default.nix @@ -2,20 +2,20 @@ , buildDunePackage , fetchurl , alcotest +, domain_shims , mdx , thread-table }: buildDunePackage rec { pname = "domain-local-await"; - version = "1.0.0"; + version = "1.0.1"; minimalOCamlVersion = "5.0"; - duneVersion = "3"; src = fetchurl { url = "https://github.com/ocaml-multicore/${pname}/releases/download/${version}/${pname}-${version}.tbz"; - sha256 = "KijWg0iTSdqbwkXd5Kr3/94urDm8QFSY2lMmGjUuxGo="; + hash = "sha256-KVIRPFPLB+KwVLLchs5yk5Ex2rggfI8xOa2yPmTN+m8="; }; propagatedBuildInputs = [ @@ -26,6 +26,7 @@ buildDunePackage rec { checkInputs = [ alcotest + domain_shims mdx ]; diff --git a/pkgs/development/ocaml-modules/eio/default.nix b/pkgs/development/ocaml-modules/eio/default.nix index 005364039e029..5b10865b15fce 100644 --- a/pkgs/development/ocaml-modules/eio/default.nix +++ b/pkgs/development/ocaml-modules/eio/default.nix @@ -1,6 +1,6 @@ { lib , ocaml -, version ? if lib.versionAtLeast ocaml.version "5.1" then "0.13" else "0.12" +, version ? if lib.versionAtLeast ocaml.version "5.1" then "0.14" else "0.12" , buildDunePackage , bigstringaf , cstruct @@ -24,9 +24,9 @@ let minimalOCamlVersion = "5.0"; hash = "sha256-2EhHzoX/t4ZBSWrSS+PGq1zCxohc7a1q4lfsrFnZJqA="; }; - "0.13" = { + "0.14" = { minimalOCamlVersion = "5.1"; - hash = "sha256-glN+4cWxgp/eggdhSk459WC9WCMyhBKQ7V73ZpHzr3A="; + hash = "sha256-UvhblH0+DecJQLW7qsDT54hB/qVkjnOvfYp1SrUchxs="; }; }."${version}"; in diff --git a/pkgs/development/ocaml-modules/eliom/default.nix b/pkgs/development/ocaml-modules/eliom/default.nix index fac5789dcdd1a..d1c0462c4dcab 100644 --- a/pkgs/development/ocaml-modules/eliom/default.nix +++ b/pkgs/development/ocaml-modules/eliom/default.nix @@ -12,7 +12,6 @@ , js_of_ocaml-lwt , js_of_ocaml-tyxml , lwt_ppx -, ocamlnet , ocsipersist }: @@ -33,7 +32,6 @@ buildDunePackage rec { buildInputs = [ js_of_ocaml-ocamlbuild js_of_ocaml-ppx_deriving_json - ocamlnet ppx_optcomp ]; diff --git a/pkgs/development/ocaml-modules/gapi-ocaml/default.nix b/pkgs/development/ocaml-modules/gapi-ocaml/default.nix index dc8bc2568415e..1db8180934bfb 100644 --- a/pkgs/development/ocaml-modules/gapi-ocaml/default.nix +++ b/pkgs/development/ocaml-modules/gapi-ocaml/default.nix @@ -1,12 +1,11 @@ { lib, fetchFromGitHub, buildDunePackage, ocaml -, cryptokit, ocamlnet, ocurl, yojson +, camlp-streams, cppo, cryptokit, ocurl, yojson , ounit2 }: buildDunePackage rec { pname = "gapi-ocaml"; - version = "0.4.4"; - duneVersion = "3"; + version = "0.4.5"; minimalOCamlVersion = "4.08"; @@ -14,10 +13,12 @@ buildDunePackage rec { owner = "astrada"; repo = pname; rev = "v${version}"; - hash = "sha256-+UNFW5tmIh5dVyTDEOfOmy1j+gV4P28jlnBTdpQNAjE="; + hash = "sha256-qlQEE8l/H22bb1VcK9YehR+9L5XepMu8JY7OLw1OIXg="; }; - propagatedBuildInputs = [ cryptokit ocamlnet ocurl yojson ]; + nativeBuildInputs = [ cppo ]; + + propagatedBuildInputs = [ camlp-streams cryptokit ocurl yojson ]; doCheck = true; checkInputs = [ ounit2 ]; diff --git a/pkgs/development/ocaml-modules/lambdapi/default.nix b/pkgs/development/ocaml-modules/lambdapi/default.nix index ddb428f720eec..f4d1cdb717b7a 100644 --- a/pkgs/development/ocaml-modules/lambdapi/default.nix +++ b/pkgs/development/ocaml-modules/lambdapi/default.nix @@ -19,8 +19,7 @@ buildDunePackage rec { pname = "lambdapi"; version = "2.3.1"; - minimalOCamlVersion = "4.08"; - duneVersion = "3"; + minimalOCamlVersion = "4.12"; src = fetchurl { url = "https://github.com/Deducteam/lambdapi/releases/download/${version}/lambdapi-${version}.tbz"; diff --git a/pkgs/development/ocaml-modules/luv/default.nix b/pkgs/development/ocaml-modules/luv/default.nix index da7f9ba1808fa..3f2d462fd15e7 100644 --- a/pkgs/development/ocaml-modules/luv/default.nix +++ b/pkgs/development/ocaml-modules/luv/default.nix @@ -6,12 +6,13 @@ buildDunePackage rec { pname = "luv"; - version = "0.5.11"; - useDune2 = true; + version = "0.5.12"; + + minimalOCamlVersion = "4.03"; src = fetchurl { url = "https://github.com/aantron/luv/releases/download/${version}/luv-${version}.tar.gz"; - sha256 = "sha256-zOz0cxGzhLi3Q36qyStNCz8JGXHtECQfZysMKiyKOkM="; + sha256 = "sha256-dp9qCIYqSdROIAQ+Jw73F3vMe7hnkDe8BgZWImNMVsA="; }; postConfigure = '' @@ -23,6 +24,7 @@ buildDunePackage rec { nativeBuildInputs = [ file ]; propagatedBuildInputs = [ ctypes result ]; checkInputs = [ alcotest ]; + # Alcotest depends on fmt that needs 4.08 or newer doCheck = lib.versionAtLeast ocaml.version "4.08"; meta = with lib; { diff --git a/pkgs/development/ocaml-modules/middleware/default.nix b/pkgs/development/ocaml-modules/middleware/default.nix new file mode 100644 index 0000000000000..2cdef2e5a3c4e --- /dev/null +++ b/pkgs/development/ocaml-modules/middleware/default.nix @@ -0,0 +1,32 @@ +{ lib +, buildDunePackage +, fetchurl +, alcotest +}: + +buildDunePackage rec { + pname = "middleware"; + version = "0.0.1"; + + minimalOCamlVersion = "4.14.0"; + + src = fetchurl { + url = "https://github.com/skolemlabs/middleware/releases/download/${version}/${pname}-${version}.tbz"; + hash = "sha256-zhLEGvyZiKrdBKWcEbB4PHvYzBlkrp1Ldnon0mP2Ypg="; + }; + + checkInputs = [ + alcotest + ]; + + doCheck = true; + + meta = { + description = "Composable stacked functions, which can respond to inner calls"; + homepage = "https://github.com/skolemlabs/middleware"; + changelog = "https://github.com/skolemlabs/middleware/blob/${version}/CHANGES.md"; + license = lib.licenses.mit; + maintainers = with lib.maintainers; [ sixstring982 ]; + }; +} + diff --git a/pkgs/development/ocaml-modules/msat/default.nix b/pkgs/development/ocaml-modules/msat/default.nix new file mode 100644 index 0000000000000..d5893dc55e043 --- /dev/null +++ b/pkgs/development/ocaml-modules/msat/default.nix @@ -0,0 +1,36 @@ +{ lib, fetchFromGitHub, buildDunePackage +, iter +, containers +, mdx +}: + +buildDunePackage rec { + pname = "msat"; + version = "0.9.1"; + + src = fetchFromGitHub { + owner = "Gbury"; + repo = "mSAT"; + rev = "v${version}"; + hash = "sha256-ER7ZUejW+Zy3l2HIoFDYbR8iaKMvLZWaeWrOAAYXjG4="; + }; + + propagatedBuildInputs = [ + iter + ]; + + postPatch = '' + substituteInPlace dune --replace mdx ocaml-mdx + ''; + + doCheck = true; + checkInputs = [ containers ]; + nativeCheckInputs = [ mdx.bin ]; + + meta = { + description = "A modular sat/smt solver with proof output."; + homepage = "https://gbury.github.io/mSAT/"; + license = lib.licenses.asl20; + maintainers = [ lib.maintainers.vbgl ]; + }; +} diff --git a/pkgs/development/ocaml-modules/ocsigen-start/default.nix b/pkgs/development/ocaml-modules/ocsigen-start/default.nix index 86dcbe053effb..7923a24f04014 100644 --- a/pkgs/development/ocaml-modules/ocsigen-start/default.nix +++ b/pkgs/development/ocaml-modules/ocsigen-start/default.nix @@ -1,17 +1,16 @@ { stdenv, lib, fetchFromGitHub, ocaml, findlib, ocsigen-toolkit, pgocaml_ppx, safepass, yojson , cohttp-lwt-unix, eliom , resource-pooling -, ocamlnet , ocsigen-ppx-rpc }: stdenv.mkDerivation rec { pname = "ocaml${ocaml.version}-ocsigen-start"; - version = "6.1.0"; + version = "6.1.2"; nativeBuildInputs = [ ocaml findlib eliom ]; buildInputs = [ ocsigen-ppx-rpc ]; - propagatedBuildInputs = [ pgocaml_ppx safepass ocsigen-toolkit yojson resource-pooling cohttp-lwt-unix ocamlnet ]; + propagatedBuildInputs = [ pgocaml_ppx safepass ocsigen-toolkit yojson resource-pooling cohttp-lwt-unix ]; strictDeps = true; @@ -21,7 +20,7 @@ stdenv.mkDerivation rec { owner = "ocsigen"; repo = "ocsigen-start"; rev = version; - hash = "sha256-gHFPutoPYKTDsFninwBTc2WOIFd3+ghRYW2hi1y5MUs="; + hash = "sha256-GhuH3rNdauJztEhygct6jCf+EmAtbSeyYP45stMzGFU="; }; preInstall = '' diff --git a/pkgs/development/ocaml-modules/ocsigen-toolkit/default.nix b/pkgs/development/ocaml-modules/ocsigen-toolkit/default.nix index aaa68c2144601..b5638229e0c4d 100644 --- a/pkgs/development/ocaml-modules/ocsigen-toolkit/default.nix +++ b/pkgs/development/ocaml-modules/ocsigen-toolkit/default.nix @@ -5,18 +5,12 @@ stdenv.mkDerivation rec { pname = "ocsigen-toolkit"; name = "ocaml${ocaml.version}-${pname}-${version}"; - version = "3.2.0"; + version = "3.3.4"; propagatedBuildInputs = [ calendar js_of_ocaml-ppx_deriving_json eliom ]; nativeBuildInputs = [ ocaml findlib opaline eliom ]; - # Remove widgets not compatible with jsoo 4.1.0 - # https://github.com/ocsigen/ocsigen-toolkit/issues/221 - preConfigure = '' - rm src/widgets/ot_{carousel,drawer,swipe,tongue}.eliom{,i} - ''; - - strictDeps = true; + strictDeps = true; installPhase = '' runHook preInstall @@ -31,7 +25,7 @@ stdenv.mkDerivation rec { owner = "ocsigen"; repo = pname; rev = version; - sha256 = "sha256:13n0y8a80bl94la4lnp9dr2x7b8plhm17g9zgf0l6x42g3886pw7"; + hash = "sha256-6ccu8WJxUwpR5YyB4j1jQPWba8GhQDxuw+IDHswQpSA="; }; meta = { diff --git a/pkgs/development/ocaml-modules/owl/default.nix b/pkgs/development/ocaml-modules/owl/default.nix index 42bd4c1383fec..22aa70d9ff1c5 100644 --- a/pkgs/development/ocaml-modules/owl/default.nix +++ b/pkgs/development/ocaml-modules/owl/default.nix @@ -1,5 +1,4 @@ -{ stdenv -, buildDunePackage +{ buildDunePackage , dune-configurator , fetchFromGitHub , alcotest @@ -16,8 +15,6 @@ buildDunePackage rec { inherit (owl-base) version src meta; - duneVersion = "3"; - checkInputs = [ alcotest ]; buildInputs = [ dune-configurator stdio ]; propagatedBuildInputs = [ @@ -27,5 +24,7 @@ buildDunePackage rec { npy ]; - doCheck = !stdenv.isDarwin; # https://github.com/owlbarn/owl/issues/462 + doCheck = false; + # Tests fail with Clang: https://github.com/owlbarn/owl/issues/462 + # and with GCC 13: https://github.com/owlbarn/owl/issues/653 } diff --git a/pkgs/development/ocaml-modules/ppx_deriving_yaml/default.nix b/pkgs/development/ocaml-modules/ppx_deriving_yaml/default.nix index 9b9e72ed08db6..8106f4619d138 100644 --- a/pkgs/development/ocaml-modules/ppx_deriving_yaml/default.nix +++ b/pkgs/development/ocaml-modules/ppx_deriving_yaml/default.nix @@ -4,13 +4,13 @@ buildDunePackage rec { pname = "ppx_deriving_yaml"; - version = "0.2.1"; + version = "0.2.2"; minimalOCamlVersion = "4.08"; src = fetchurl { url = "https://github.com/patricoferris/ppx_deriving_yaml/releases/download/v${version}/ppx_deriving_yaml-${version}.tbz"; - hash = "sha256-3vmay8UY7d3j96VOQ+D3oYEotzVls91F51ebXWQ/9SQ="; + hash = "sha256-9xy43jaCpKo/On5sTTt8f0Mytyjj1JN2QuFMcoWYTBY="; }; propagatedBuildInputs = [ ppxlib ppx_deriving yaml ]; diff --git a/pkgs/development/ocaml-modules/riot/default.nix b/pkgs/development/ocaml-modules/riot/default.nix index e830e7034e10b..81d1a48773ea2 100644 --- a/pkgs/development/ocaml-modules/riot/default.nix +++ b/pkgs/development/ocaml-modules/riot/default.nix @@ -1,8 +1,9 @@ { lib -, bigstringaf , buildDunePackage +, cstruct , fetchurl -, iomux +, mdx +, poll , ptime , telemetry , uri @@ -10,24 +11,29 @@ buildDunePackage rec { pname = "riot"; - version = "0.0.5"; + version = "0.0.7"; minimalOCamlVersion = "5.1"; src = fetchurl { url = "https://github.com/leostera/riot/releases/download/${version}/riot-${version}.tbz"; - hash = "sha256-Abe4LMxlaxK3MVlg2d8X60aCuPGvaOn+4zFx/uH5z4g="; + hash = "sha256-t+PMBh4rZXi82dUljv3nLzZX5o1iagBbQ9FfGnr/dp4="; }; propagatedBuildInputs = [ - bigstringaf - iomux + cstruct + poll ptime telemetry uri ]; - doCheck = true; + checkInputs = [ + mdx + mdx.bin + ]; + + doCheck = false; # fails on sandbox meta = { description = "An actor-model multi-core scheduler for OCaml 5"; diff --git a/pkgs/development/ocaml-modules/timedesc/default.nix b/pkgs/development/ocaml-modules/timedesc/default.nix new file mode 100644 index 0000000000000..b77f5af17b408 --- /dev/null +++ b/pkgs/development/ocaml-modules/timedesc/default.nix @@ -0,0 +1,36 @@ +{ lib +, fetchurl +, buildDunePackage +, angstrom +, ptime +, seq +, timedesc-tzdb +, timedesc-tzlocal +}: + +buildDunePackage rec { + pname = "timedesc"; + version = "2.0.0"; + + src = fetchurl { + url = "https://github.com/daypack-dev/timere/releases/download/timedesc-${version}/timedesc-${version}.tar.gz"; + hash = "sha256-NnnQpWOE1mt/F5lkWRPdDwpqXCUlcNi+Z5GE6YQQLK8="; + }; + + sourceRoot = "."; + + propagatedBuildInputs = [ + angstrom + ptime + seq + timedesc-tzdb + timedesc-tzlocal + ]; + + meta = { + description = "OCaml date time handling library"; + homepage = "https://github.com/daypack-dev/timere"; + license = lib.licenses.mit; + maintainers = [ lib.maintainers.vbgl ]; + }; +} diff --git a/pkgs/development/ocaml-modules/timedesc/tzdb.nix b/pkgs/development/ocaml-modules/timedesc/tzdb.nix new file mode 100644 index 0000000000000..95fab02d11a04 --- /dev/null +++ b/pkgs/development/ocaml-modules/timedesc/tzdb.nix @@ -0,0 +1,15 @@ +{ lib +, buildDunePackage +, timedesc +}: + +buildDunePackage { + pname = "timedesc-tzdb"; + + inherit (timedesc) version src sourceRoot; + + meta = timedesc.meta // { + description = "Virtual library for Timedesc time zone database backends"; + }; +} + diff --git a/pkgs/development/ocaml-modules/timedesc/tzlocal.nix b/pkgs/development/ocaml-modules/timedesc/tzlocal.nix new file mode 100644 index 0000000000000..6dcbfd741075b --- /dev/null +++ b/pkgs/development/ocaml-modules/timedesc/tzlocal.nix @@ -0,0 +1,16 @@ +{ lib +, buildDunePackage +, timedesc +}: + +buildDunePackage { + pname = "timedesc-tzlocal"; + + inherit (timedesc) version src sourceRoot; + + minimalOCamlVersion = "4.08"; + + meta = timedesc.meta // { + description = "Virtual library for Timedesc local time zone detection backends"; + }; +} diff --git a/pkgs/development/ocaml-modules/tiny_httpd/default.nix b/pkgs/development/ocaml-modules/tiny_httpd/default.nix index cb407ef585d98..2e8e537cba806 100644 --- a/pkgs/development/ocaml-modules/tiny_httpd/default.nix +++ b/pkgs/development/ocaml-modules/tiny_httpd/default.nix @@ -5,15 +5,15 @@ buildDunePackage rec { pname = "tiny_httpd"; - version = "0.12"; + version = "0.16"; - minimalOCamlVersion = "4.04"; + minimalOCamlVersion = "4.08"; src = fetchFromGitHub { owner = "c-cube"; repo = pname; rev = "v${version}"; - sha256 = "sha256:1z9hzc0ib7pg9fsjmpggjqwrnip57izr2v0na7vc7s25lxsiag6a"; + sha256 = "sha256-9L4WCduQNj5Jd/u3SozuXiGTkgojwfGIP5KgQmnWgQw="; }; buildInputs = [ result ]; @@ -24,5 +24,6 @@ buildDunePackage rec { inherit (src.meta) homepage; license = lib.licenses.mit; maintainers = [ lib.maintainers.vbgl ]; + mainProgram = "http_of_dir"; }; } diff --git a/pkgs/development/ocaml-modules/type_eq/default.nix b/pkgs/development/ocaml-modules/type_eq/default.nix new file mode 100644 index 0000000000000..a1426789e3db5 --- /dev/null +++ b/pkgs/development/ocaml-modules/type_eq/default.nix @@ -0,0 +1,32 @@ +{ lib +, buildDunePackage +, fetchurl +, alcotest +}: + +buildDunePackage rec { + pname = "type_eq"; + version = "0.0.1"; + + minimalOCamlVersion = "4.08.1"; + + src = fetchurl { + url = "https://github.com/skolemlabs/type_eq/releases/download/${version}/${pname}-${version}.tbz"; + hash = "sha256-4u/HF92Hbf9Rcv+JTAMPhYZjoKZ1cS0mBMkzU/hxx38="; + }; + + checkInputs = [ + alcotest + ]; + + doCheck = true; + + meta = { + description = "Type equality proofs for OCaml 4"; + homepage = "https://github.com/skolemlabs/type_eq"; + changelog = "https://github.com/skolemlabs/type_eq/blob/${version}/CHANGES.md"; + license = lib.licenses.mit; + maintainers = with lib.maintainers; [ sixstring982 ]; + }; +} + diff --git a/pkgs/development/ocaml-modules/uucd/default.nix b/pkgs/development/ocaml-modules/uucd/default.nix index c89a40a50b28f..3bad3a84945aa 100644 --- a/pkgs/development/ocaml-modules/uucd/default.nix +++ b/pkgs/development/ocaml-modules/uucd/default.nix @@ -6,11 +6,11 @@ let in stdenv.mkDerivation rec { name = "ocaml-${pname}-${version}"; - version = "15.0.0"; + version = "15.1.0"; src = fetchurl { url = "${webpage}/releases/${pname}-${version}.tbz"; - sha256 = "sha256-DksDi6Dfe/fNGBmeubwxv9dScTHPJRuaPrlX7M8QRrw="; + hash = "sha256-HIANZ5SDJcytlpw/W9Ae2eFTutrutJj2PgJCfByobfI="; }; nativeBuildInputs = [ ocaml findlib ocamlbuild topkg ]; diff --git a/pkgs/development/ocaml-modules/uucp/default.nix b/pkgs/development/ocaml-modules/uucp/default.nix index 476a4529f3fe9..7ef10660fbb2c 100644 --- a/pkgs/development/ocaml-modules/uucp/default.nix +++ b/pkgs/development/ocaml-modules/uucp/default.nix @@ -2,14 +2,14 @@ let pname = "uucp"; - version = "15.0.0"; + version = "15.1.0"; webpage = "https://erratique.ch/software/${pname}"; - minimumOCamlVersion = "4.03"; + minimalOCamlVersion = "4.03"; doCheck = true; in -if lib.versionOlder ocaml.version minimumOCamlVersion -then builtins.throw "${pname} needs at least OCaml ${minimumOCamlVersion}" +if lib.versionOlder ocaml.version minimalOCamlVersion +then builtins.throw "${pname} needs at least OCaml ${minimalOCamlVersion}" else stdenv.mkDerivation { @@ -18,7 +18,7 @@ stdenv.mkDerivation { src = fetchurl { url = "${webpage}/releases/${pname}-${version}.tbz"; - sha256 = "sha256-rEeU9AWpCzuAtAOe7hJHBmJjP97BZsQsPFQQ8uZLUzA="; + hash = "sha256-qR5LiAZHt4oD3ak0x17GqbYXNaJmJxFk/WGoxT+yWYc="; }; nativeBuildInputs = [ ocaml findlib ocamlbuild topkg ]; diff --git a/pkgs/development/ocaml-modules/zipc/default.nix b/pkgs/development/ocaml-modules/zipc/default.nix index a4b22de3e94b1..a31d2644e668b 100644 --- a/pkgs/development/ocaml-modules/zipc/default.nix +++ b/pkgs/development/ocaml-modules/zipc/default.nix @@ -7,11 +7,11 @@ lib.throwIfNot (lib.versionAtLeast ocaml.version "4.14") stdenv.mkDerivation rec { pname = "ocaml${ocaml.version}-zipc"; - version = "0.1.0"; + version = "0.2.0"; src = fetchurl { url = "https://erratique.ch/software/zipc/releases/zipc-${version}.tbz"; - hash = "sha256-vU4AGW1MjQ31xjwvyRKSn1AwS0X6gjLvaJGYKqzFRpk="; + hash = "sha256-YQqkCURwrJgFH0+zgfket25zJQ4w+Tcc1mTSrDuWRt0="; }; strictDeps = true; diff --git a/pkgs/development/perl-modules/ham/default.nix b/pkgs/development/perl-modules/ham/default.nix index 8005322cff731..8d1fce1ab8979 100644 --- a/pkgs/development/perl-modules/ham/default.nix +++ b/pkgs/development/perl-modules/ham/default.nix @@ -5,24 +5,24 @@ , openssh , GitRepository , URI -, XMLMini +, XMLParser }: buildPerlPackage { pname = "ham-unstable"; - version = "2022-10-26"; + version = "2023-10-06"; src = fetchFromGitHub { owner = "kernkonzept"; repo = "ham"; - rev = "f2f10516177d00a79fe81701351632df2544ba4e"; - hash = "sha256-cxlZh1x8ycpZIwSeOwqB6BtwYaMoWtSPaeiyW41epdk="; + rev = "90d104ce481ee8f9b770be4b37d97f34eef5f82f"; + hash = "sha256-DeHH7k9K7CmQW6eOyf8TCV/HNYS30oFnI1b8ztBDk/o="; }; outputs = [ "out" ]; nativeBuildInputs = [ makeWrapper ]; - propagatedBuildInputs = [ openssh GitRepository URI XMLMini ]; + propagatedBuildInputs = [ openssh GitRepository URI XMLParser ]; preConfigure = '' patchShebangs . @@ -38,8 +38,6 @@ buildPerlPackage { --prefix PATH : ${openssh}/bin ''; - doCheck = false; - meta = with lib; { description = "A tool to manage big projects consisting of multiple loosely-coupled git repositories"; homepage = "https://github.com/kernkonzept/ham"; diff --git a/pkgs/development/php-packages/amqp/default.nix b/pkgs/development/php-packages/amqp/default.nix index 5153c500f2ba3..4d19fd7589971 100644 --- a/pkgs/development/php-packages/amqp/default.nix +++ b/pkgs/development/php-packages/amqp/default.nix @@ -1,7 +1,7 @@ { buildPecl, lib, rabbitmq-c, fetchFromGitHub }: let - version = "2.1.1"; + version = "2.1.2"; in buildPecl { inherit version; pname = "amqp"; @@ -10,7 +10,7 @@ in buildPecl { owner = "php-amqp"; repo = "php-amqp"; rev = "v${version}"; - sha256 = "sha256-QHiQL3INd0zQpmCOcJx7HhN770m9ql0Cs63OTOLOrNQ="; + sha256 = "sha256-jVD5dq2kgFnprj190W9hnLG+9yPLWm19AjoGBBz6v8c="; }; buildInputs = [ rabbitmq-c ]; diff --git a/pkgs/development/php-packages/castor/default.nix b/pkgs/development/php-packages/castor/default.nix index 25ce4df5403f0..70d07c1b8c700 100644 --- a/pkgs/development/php-packages/castor/default.nix +++ b/pkgs/development/php-packages/castor/default.nix @@ -8,16 +8,16 @@ php.buildComposerProject (finalAttrs: { pname = "castor"; - version = "0.10.0"; + version = "0.11.1"; src = fetchFromGitHub { owner = "jolicode"; repo = "castor"; rev = "v${finalAttrs.version}"; - hash = "sha256-/pUo3Lure5N6vsh8o8cQDqlWj8vgOC0ctenO/93K3zQ="; + hash = "sha256-FqFCKvhOEtDERNRLB3613geEiNDOlQuLeCa5uVvoMdM="; }; - vendorHash = "sha256-l/paOQmJs8/7YN/XsY6wklojLE3z3GIV3jrgZvyQp/8="; + vendorHash = "sha256-+ORwa3+tkVJ9KU+9URg+1lyHoL1swxg6DG5ex8HjigE="; nativeBuildInputs = [ installShellFiles ]; diff --git a/pkgs/development/php-packages/opentelemetry/default.nix b/pkgs/development/php-packages/opentelemetry/default.nix index f3ceeca611e23..38dfa86e1ce71 100644 --- a/pkgs/development/php-packages/opentelemetry/default.nix +++ b/pkgs/development/php-packages/opentelemetry/default.nix @@ -1,7 +1,7 @@ { lib, buildPecl, fetchFromGitHub }: let - version = "1.0.0"; + version = "1.0.1"; in buildPecl { inherit version; pname = "opentelemetry"; @@ -10,7 +10,7 @@ in buildPecl { owner = "open-telemetry"; repo = "opentelemetry-php-instrumentation"; rev = version; - hash = "sha256-uCsm2vsxXfbEH9spCgWHhmqzyRH9k8kqIAIdQk5CNYg="; + hash = "sha256-VHUzRhTtHygHoW+poItaphV+mxe4rmmSfGgesUgPz8Q="; }; sourceRoot = "source/ext"; diff --git a/pkgs/development/php-packages/phalcon/default.nix b/pkgs/development/php-packages/phalcon/default.nix index 8001d586f1b01..95bd2d894457f 100644 --- a/pkgs/development/php-packages/phalcon/default.nix +++ b/pkgs/development/php-packages/phalcon/default.nix @@ -2,13 +2,13 @@ buildPecl rec { pname = "phalcon"; - version = "5.5.0"; + version = "5.6.0"; src = fetchFromGitHub { owner = "phalcon"; repo = "cphalcon"; rev = "v${version}"; - hash = "sha256-ycE8A3ESV97COTdbjkrOJCZpEmP1l9nkmNnhjJGaBeE="; + hash = "sha256-EtwhWRBqJOMndmsy+Rgc4MVjFZg/Fm97qkSuTGxqHhI="; }; internalDeps = [ php.extensions.session php.extensions.pdo ]; diff --git a/pkgs/development/php-packages/php-cs-fixer/default.nix b/pkgs/development/php-packages/php-cs-fixer/default.nix index f7cfd39677718..611e5f2630911 100644 --- a/pkgs/development/php-packages/php-cs-fixer/default.nix +++ b/pkgs/development/php-packages/php-cs-fixer/default.nix @@ -2,14 +2,14 @@ let pname = "php-cs-fixer"; - version = "3.45.0"; + version = "3.49.0"; in mkDerivation { inherit pname version; src = fetchurl { url = "https://github.com/FriendsOfPHP/PHP-CS-Fixer/releases/download/v${version}/php-cs-fixer.phar"; - sha256 = "sha256-0i5ES1BfekNAOJuGQ4q9lqle/RS3YxgLt+CJa/Ow5/k="; + sha256 = "sha256-cnH6SEEaEh7X9zlHgHD8eOpaSUDnqhL2SMnNGSj1nJQ="; }; dontUnpack = true; diff --git a/pkgs/development/php-packages/relay/default.nix b/pkgs/development/php-packages/relay/default.nix index d21667aa06221..ee393c91d5686 100644 --- a/pkgs/development/php-packages/relay/default.nix +++ b/pkgs/development/php-packages/relay/default.nix @@ -13,42 +13,42 @@ }: let - version = "0.6.8"; + version = "0.7.0"; hashes = { "aarch64-darwin" = { platform = "darwin-arm64"; hash = { - "8.0" = "sha256-DDn5JcRux8DN1728cqMWL7eMwueiY+jO/+fw2+ND394="; - "8.1" = "sha256-4r954EKFUA45G55MpnnKcYONCNe45dIffiygs6r8OOI="; - "8.2" = "sha256-qB2IWSsyAKzbUxjt2nz5uLp7PkgPPna1mEBqvz8oTHc="; - "8.3" = "sha256-0s+4zNknH8lEfGS8oU3JjVEuX3mZEo9AULE0hlv11mQ="; + "8.0" = "sha256-pd/9TWZPgAfmVM0/QVYRHu5k4gANcxCSnfAl38irO0Y="; + "8.1" = "sha256-OpxE/nu8MZedTmKGQeyJm36pyyHlRpW11avuGcnGP68="; + "8.2" = "sha256-+CMPdXZotUr43Qda1FwGpuWPEE1K4RuBNE9fiokAtoY="; + "8.3" = "sha256-lbKVxOd5gK5VDGnJ42w7L5DFKsBQDZXgEZLR/Y0gP88="; }; }; "aarch64-linux" = { platform = "debian-aarch64+libssl3"; hash = { - "8.0" = "sha256-tLrampq1BBrhC+F/v2vcNBJp+16wzjHC8CGFKSswPUo="; - "8.1" = "sha256-DQG3maP9ImwSCTEmP152l5wr7A964lg9kNFAmVQhPqA="; - "8.2" = "sha256-3Ygb2J+MFL+H1zsepBaQKg/ybqgXVwFWt2QrNRctT8o="; - "8.3" = "sha256-MKpN09+Ai9NFARUEL+pkxQxbpRpFTx78als8ViXMdB8="; + "8.0" = "sha256-NfeC3p0YLYz3NbjzjMRRuzMsnYe9JRwlBjddAG2WV7g="; + "8.1" = "sha256-kvO0PE3BSgFSfe1zHh3WnygQfVV+5V0YFfClBim1Kj4="; + "8.2" = "sha256-illxRqqwMKVNAp6BD+mktKDccM7B/Q1W1KF9UB6aMUQ="; + "8.3" = "sha256-QdB7g+ePJU8qt/BVo1CFnQ2vfkqR29WueBy3dLOOaR0="; }; }; "x86_64-darwin" = { platform = "darwin-x86-64"; hash = { - "8.0" = "sha256-jYnhJowVgryKSec+rOfyBiH2gZyasr1h1I+sjPiLods="; - "8.1" = "sha256-VKvVo6so0NOfiq7JjnanBEUDa1Iqmkn9egKnOJSCHTg="; - "8.2" = "sha256-WXWhSljy199UbZiEjfC50XvnKfVEU54lPa6e2+jCqiQ="; - "8.3" = "sha256-CrJoONSm0aXlBWjsRqAJC39qB4tHkMuLAvM5d847DsE="; + "8.0" = "sha256-rd3pt2N22bF4a8OOwksI7KJjR91IoxHwk3LcKuHSpV0="; + "8.1" = "sha256-Y/moZrBe4rooQBSQKS8vPCTjviHKy4O7d4T1kD3udC4="; + "8.2" = "sha256-H3EWFk/ZmE+fSU98nLHyq1p1vtU/TYp28OzNLox6kYY="; + "8.3" = "sha256-vZTarrauo7U2JLOXUCwmu2h+vBtWZpm0Q39KkuLyVgY="; }; }; "x86_64-linux" = { platform = "debian-x86-64+libssl3"; hash = { - "8.0" = "sha256-kzPlotJWsUIhYUFUwcXEBGv5eNfCNLDNgrs+IqZPH5c="; - "8.1" = "sha256-QBnKHXBW2XpD4GvphzyMPiIrOfs9pzyG2Fv/VyV+h9k="; - "8.2" = "sha256-yk+dkULtWVIccKurBdT96HOPbW8Q9l44iYpAAcoZYog="; - "8.3" = "sha256-MpMupGFGxipghoA57EOytSsDsm9b25rc/VPIza+QMfM="; + "8.0" = "sha256-jq/nHC9IGevYBqbM08nF71P9jH6z4NB8s1NdjHOfXQA="; + "8.1" = "sha256-vbFONNHpuSTQsZMrAIdGEoBl5ySchcFkSuhW5uZKbWg="; + "8.2" = "sha256-mXUAMkxwtuPZbIyCybBcxpmaBplr5h59pZEdgJ3PWtA="; + "8.3" = "sha256-YL0P8GtFkV0cmJX1y6wd/HtA0LFzeuOcKDLUCagxHxE="; }; }; }; diff --git a/pkgs/development/php-packages/spx/default.nix b/pkgs/development/php-packages/spx/default.nix index 020927ccf4910..b6f7598ffe5ad 100644 --- a/pkgs/development/php-packages/spx/default.nix +++ b/pkgs/development/php-packages/spx/default.nix @@ -1,7 +1,7 @@ { buildPecl, lib, fetchFromGitHub, zlib }: let - version = "0.4.14"; + version = "0.4.15"; in buildPecl { inherit version; pname = "spx"; @@ -10,7 +10,7 @@ in buildPecl { owner = "NoiseByNorthwest"; repo = "php-spx"; rev = "v${version}"; - hash = "sha256-LdR3ilknSUuNTAb9wfIpNGdaR3uwd4C47nZYRzfTfx8="; + hash = "sha256-gw6wbPt1Qy0vNfT0flq7bxpnGU3SgJvPVhk8H0Imvx4="; }; configureFlags = [ diff --git a/pkgs/development/php-packages/zstd/default.nix b/pkgs/development/php-packages/zstd/default.nix new file mode 100644 index 0000000000000..a9428ca477a0b --- /dev/null +++ b/pkgs/development/php-packages/zstd/default.nix @@ -0,0 +1,32 @@ +{ buildPecl, lib, zstd, pkg-config, fetchFromGitHub }: + +let + version = "0.13.3"; +in buildPecl { + inherit version; + pname = "zstd"; + + src = fetchFromGitHub { + owner = "kjdev"; + repo = "php-ext-zstd"; + rev = version; + hash = "sha256-jEuL93ScF0/FlfUvib6uZafOkIe0+VkWV/frpSjTkvY="; + }; + + nativeBuildInputs = [ + pkg-config + ]; + + buildInputs = [ zstd ]; + + configureFlags = [ + "--with-libzstd" + ]; + + meta = with lib; { + description = "Zstd Extension for PHP"; + license = licenses.mit; + homepage = "https://github.com/kjdev/php-ext-zstd"; + maintainers = with lib.maintainers; [ shyim ]; + }; +} diff --git a/pkgs/development/python-modules/acme/default.nix b/pkgs/development/python-modules/acme/default.nix index 538b8dff964ac..65e930e07414a 100644 --- a/pkgs/development/python-modules/acme/default.nix +++ b/pkgs/development/python-modules/acme/default.nix @@ -3,7 +3,7 @@ , cryptography , pyasn1 , pyopenssl -, pyRFC3339 +, pyrfc3339 , josepy , pytz , requests @@ -20,7 +20,7 @@ buildPythonPackage rec { format = "setuptools"; propagatedBuildInputs = [ - cryptography pyasn1 pyopenssl pyRFC3339 pytz requests requests-toolbelt six + cryptography pyasn1 pyopenssl pyrfc3339 pytz requests requests-toolbelt six werkzeug ndg-httpsclient josepy ]; diff --git a/pkgs/development/python-modules/acquire/default.nix b/pkgs/development/python-modules/acquire/default.nix index aabd6216c904c..c2c4e125e3287 100644 --- a/pkgs/development/python-modules/acquire/default.nix +++ b/pkgs/development/python-modules/acquire/default.nix @@ -17,7 +17,7 @@ buildPythonPackage rec { pname = "acquire"; - version = "3.11"; + version = "3.12"; pyproject = true; disabled = pythonOlder "3.9"; @@ -26,7 +26,7 @@ buildPythonPackage rec { owner = "fox-it"; repo = "acquire"; rev = "refs/tags/${version}"; - hash = "sha256-0aLPDh9lrKpHo97VFFwCmPXyXXNFGgkdjoppzm3BCTo="; + hash = "sha256-anRNCnLDKHAEfOWi6m1n4R9lvFTlZgw5xxh39exvzH0="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/adafruit-platformdetect/default.nix b/pkgs/development/python-modules/adafruit-platformdetect/default.nix index 138f339a17ac3..baecca21fd5e5 100644 --- a/pkgs/development/python-modules/adafruit-platformdetect/default.nix +++ b/pkgs/development/python-modules/adafruit-platformdetect/default.nix @@ -7,7 +7,7 @@ buildPythonPackage rec { pname = "adafruit-platformdetect"; - version = "3.58.0"; + version = "3.60.0"; pyproject = true; disabled = pythonOlder "3.7"; @@ -15,7 +15,7 @@ buildPythonPackage rec { src = fetchPypi { pname = "Adafruit-PlatformDetect"; inherit version; - hash = "sha256-9pucdj4rXCLitoNqu1ddETY9XUmIlIfC0hIoKJ54Ks8="; + hash = "sha256-ZE3rETwAuhv7pHA/zYDKtStWONShFG8tWDeN9K8JdG8="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/adjusttext/default.nix b/pkgs/development/python-modules/adjusttext/default.nix index d8d82edb8a315..a97353baa9872 100644 --- a/pkgs/development/python-modules/adjusttext/default.nix +++ b/pkgs/development/python-modules/adjusttext/default.nix @@ -4,27 +4,34 @@ , matplotlib , numpy , packaging +, pythonOlder +, scipy +, setuptools }: buildPythonPackage rec { pname = "adjusttext"; - version = "0.8.1"; - format = "setuptools"; + version = "1.0.4"; + pyproject = true; + + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "Phlya"; - repo = pname; - rev = "refs/tags/${version}"; + repo = "adjusttext"; + rev = "refs/tags/v${version}"; hash = "sha256-Lhl6ykx5ynf+pBub5tBUaALm1w/88jbuSXPigE216NY="; }; nativeBuildInputs = [ packaging + setuptools ]; propagatedBuildInputs = [ matplotlib numpy + scipy ]; # Project has no tests @@ -37,6 +44,7 @@ buildPythonPackage rec { meta = with lib; { description = "Iteratively adjust text position in matplotlib plots to minimize overlaps"; homepage = "https://github.com/Phlya/adjustText"; + changelog = "https://github.com/Phlya/adjustText/releases/tag/v${version}"; license = licenses.mit; maintainers = with maintainers; [ samuela ]; }; diff --git a/pkgs/development/python-modules/aesedb/default.nix b/pkgs/development/python-modules/aesedb/default.nix index 5dd95fe9eae58..62f9b0dd5b948 100644 --- a/pkgs/development/python-modules/aesedb/default.nix +++ b/pkgs/development/python-modules/aesedb/default.nix @@ -12,16 +12,16 @@ buildPythonPackage rec { pname = "aesedb"; - version = "0.1.4"; - format = "pyproject"; + version = "0.1.6"; + pyproject = true; disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "skelsec"; - repo = pname; + repo = "aesedb"; rev = "refs/tags/${version}"; - hash = "sha256-QqPy68rWabRY0Y98W+odwP/10gMtLAQ0Ah2+ZLkqHPI="; + hash = "sha256-nYuMWE03Rsw1XuD/bxccpu8rddeXgS/EKJcO1VBLTLU="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/agate-sql/default.nix b/pkgs/development/python-modules/agate-sql/default.nix index 0e339d0d21357..70cb2fbda6889 100644 --- a/pkgs/development/python-modules/agate-sql/default.nix +++ b/pkgs/development/python-modules/agate-sql/default.nix @@ -11,14 +11,14 @@ buildPythonPackage rec { pname = "agate-sql"; - version = "0.7.0"; + version = "0.7.2"; format = "setuptools"; disabled = isPy27; src = fetchPypi { inherit pname version; - hash = "sha256-uyHkkc3KzuYulOtod9KkHQmszVh2mrrCOLwvQt6JTMk="; + hash = "sha256-mxswKEpXP9QWdZQ3Jz3MXIECK98vrLJLSqAppir9U7A="; }; propagatedBuildInputs = [ agate sqlalchemy ]; diff --git a/pkgs/development/python-modules/agate/default.nix b/pkgs/development/python-modules/agate/default.nix index 80daa780685b8..9c464014bb619 100644 --- a/pkgs/development/python-modules/agate/default.nix +++ b/pkgs/development/python-modules/agate/default.nix @@ -18,7 +18,7 @@ buildPythonPackage rec { pname = "agate"; - version = "1.7.1"; + version = "1.9.1"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -27,7 +27,7 @@ buildPythonPackage rec { owner = "wireservice"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-7Ew9bgeheymCL8xXSW5li0LdFvGYb/7gPxmC4w6tHvM="; + hash = "sha256-I7jvZA/m06kUuUcfglySaroDbJ5wbgiF2lb84EFPmpw="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/aio-geojson-client/default.nix b/pkgs/development/python-modules/aio-geojson-client/default.nix index 06f74202743b2..04dfa69f8912a 100644 --- a/pkgs/development/python-modules/aio-geojson-client/default.nix +++ b/pkgs/development/python-modules/aio-geojson-client/default.nix @@ -14,7 +14,7 @@ buildPythonPackage rec { pname = "aio-geojson-client"; - version = "0.19"; + version = "0.20"; pyproject = true; disabled = pythonOlder "3.8"; @@ -23,7 +23,7 @@ buildPythonPackage rec { owner = "exxamalte"; repo = "python-aio-geojson-client"; rev = "refs/tags/v${version}"; - hash = "sha256-ia8nfU5/dcLq3ctJTvpDmvB24mCjO3JrkfQsuXPR+xs="; + hash = "sha256-GASjsOCZ4lSK0+VtIuVxFNxjMCbHkUGy/KSBtGLSaXw="; }; __darwinAllowLocalNetworking = true; diff --git a/pkgs/development/python-modules/aio-geojson-generic-client/default.nix b/pkgs/development/python-modules/aio-geojson-generic-client/default.nix index 4d10c57249701..343f47d2aca40 100644 --- a/pkgs/development/python-modules/aio-geojson-generic-client/default.nix +++ b/pkgs/development/python-modules/aio-geojson-generic-client/default.nix @@ -8,6 +8,7 @@ , pytest-asyncio , pytestCheckHook , pythonOlder +, pythonRelaxDepsHook , pytz , setuptools }: @@ -29,9 +30,15 @@ buildPythonPackage rec { __darwinAllowLocalNetworking = true; nativeBuildInputs = [ + pythonRelaxDepsHook setuptools ]; + pythonRelaxDeps = [ + # geojson>=2.4.0,<3, but we have 3.x + "geojson" + ]; + propagatedBuildInputs = [ aiohttp aio-geojson-client diff --git a/pkgs/development/python-modules/aio-geojson-geonetnz-quakes/default.nix b/pkgs/development/python-modules/aio-geojson-geonetnz-quakes/default.nix index f8daf10c3c1fa..65973321f95b8 100644 --- a/pkgs/development/python-modules/aio-geojson-geonetnz-quakes/default.nix +++ b/pkgs/development/python-modules/aio-geojson-geonetnz-quakes/default.nix @@ -1,29 +1,34 @@ { lib , aio-geojson-client , aiohttp -, aresponses +, aioresponses , buildPythonPackage , fetchFromGitHub , pytest-asyncio , pytestCheckHook , pytz , pythonOlder +, setuptools }: buildPythonPackage rec { pname = "aio-geojson-geonetnz-quakes"; - version = "0.15"; - format = "setuptools"; + version = "0.16"; + pyproject = true; - disabled = pythonOlder "3.7"; + disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "exxamalte"; repo = "python-aio-geojson-geonetnz-quakes"; rev = "refs/tags/v${version}"; - hash = "sha256-/EPPEGLtiZBorZMnVg0NqwnHCbCXyZzz4449MzAYQx8="; + hash = "sha256-8OpmA3yHjUY+N5Obri4RWeuJiW916xGSWUYUgdpmjkw="; }; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ aio-geojson-client aiohttp @@ -33,7 +38,7 @@ buildPythonPackage rec { __darwinAllowLocalNetworking = true; nativeCheckInputs = [ - aresponses + aioresponses pytest-asyncio pytestCheckHook ]; diff --git a/pkgs/development/python-modules/aio-geojson-geonetnz-volcano/default.nix b/pkgs/development/python-modules/aio-geojson-geonetnz-volcano/default.nix index d97070df5907a..35e558fdc2625 100644 --- a/pkgs/development/python-modules/aio-geojson-geonetnz-volcano/default.nix +++ b/pkgs/development/python-modules/aio-geojson-geonetnz-volcano/default.nix @@ -1,20 +1,22 @@ { lib , aio-geojson-client , aiohttp -, aresponses +, aioresponses , mock , buildPythonPackage , fetchFromGitHub , pytest-asyncio +, pytest-xdist , pytestCheckHook , pytz , pythonOlder +, setuptools }: buildPythonPackage rec { pname = "aio-geojson-geonetnz-volcano"; - version = "0.8"; - format = "setuptools"; + version = "0.9"; + pyproject = true; disabled = pythonOlder "3.7"; @@ -22,9 +24,13 @@ buildPythonPackage rec { owner = "exxamalte"; repo = "python-aio-geojson-geonetnz-volcano"; rev = "refs/tags/v${version}"; - hash = "sha256-wJVFjy6QgYb6GX9pZTylYFvCRWmD2lAFZKnodsa8Yqo="; + hash = "sha256-ZmGDO9EROFMlxdj5txNh719M+3l/0jRFbB2h2AyZAdI="; }; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ aio-geojson-client aiohttp @@ -34,9 +40,10 @@ buildPythonPackage rec { __darwinAllowLocalNetworking = true; nativeCheckInputs = [ - aresponses + aioresponses mock pytest-asyncio + pytest-xdist pytestCheckHook ]; @@ -46,7 +53,7 @@ buildPythonPackage rec { meta = with lib; { description = "Python module for accessing the GeoNet NZ Volcanic GeoJSON feeds"; - homepage = "https://github.com/exxamalte/pythonaio-geojson-geonetnz-volcano"; + homepage = "https://github.com/exxamalte/python-aio-geojson-geonetnz-volcano"; changelog = "https://github.com/exxamalte/python-aio-geojson-geonetnz-volcano/blob/v${version}/CHANGELOG.md"; license = with licenses; [ asl20 ]; maintainers = with maintainers; [ fab ]; diff --git a/pkgs/development/python-modules/aio-geojson-nsw-rfs-incidents/default.nix b/pkgs/development/python-modules/aio-geojson-nsw-rfs-incidents/default.nix index bf18c2bf184b6..94724e800f58e 100644 --- a/pkgs/development/python-modules/aio-geojson-nsw-rfs-incidents/default.nix +++ b/pkgs/development/python-modules/aio-geojson-nsw-rfs-incidents/default.nix @@ -1,29 +1,34 @@ { lib , aio-geojson-client , aiohttp -, aresponses +, aioresponses , buildPythonPackage , fetchFromGitHub , pytest-asyncio , pytestCheckHook -, pytz , pythonOlder +, pytz +, setuptools }: buildPythonPackage rec { pname = "aio-geojson-nsw-rfs-incidents"; - version = "0.6"; - format = "setuptools"; + version = "0.7"; + pyproject = true; - disabled = pythonOlder "3.7"; + disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "exxamalte"; repo = "python-aio-geojson-nsw-rfs-incidents"; rev = "refs/tags/v${version}"; - hash = "sha256-pn0r5iLpNnK3xmAhq/oX90hdiHgFDuwDQqfAzkp5jmw="; + hash = "sha256-HksiKfXhLASAgU81x7YiOXFmBLIkqJ9ldWLLY1ZbZlk="; }; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ aio-geojson-client aiohttp @@ -33,7 +38,7 @@ buildPythonPackage rec { __darwinAllowLocalNetworking = true; nativeCheckInputs = [ - aresponses + aioresponses pytest-asyncio pytestCheckHook ]; diff --git a/pkgs/development/python-modules/aio-geojson-usgs-earthquakes/default.nix b/pkgs/development/python-modules/aio-geojson-usgs-earthquakes/default.nix index 89a1fd75b8f26..339481624a359 100644 --- a/pkgs/development/python-modules/aio-geojson-usgs-earthquakes/default.nix +++ b/pkgs/development/python-modules/aio-geojson-usgs-earthquakes/default.nix @@ -1,29 +1,34 @@ { lib , aio-geojson-client , aiohttp -, aresponses +, aioresponses , buildPythonPackage , fetchFromGitHub , pytest-asyncio , pytestCheckHook , pytz , pythonOlder +, setuptools }: buildPythonPackage rec { pname = "aio-geojson-usgs-earthquakes"; - version = "0.2"; - format = "setuptools"; + version = "0.3"; + pyproject = true; - disabled = pythonOlder "3.7"; + disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "exxamalte"; repo = "python-aio-geojson-usgs-earthquakes"; rev = "refs/tags/v${version}"; - hash = "sha256-ET8wcOep4tSZJXyL+XvfW2j9eKp6LrBk/g18ZlgLIzc="; + hash = "sha256-Q9vBy5R5N5ihJdSMALo88qVYcFVs2/33lYRPdLej4S8="; }; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ aio-geojson-client aiohttp @@ -37,7 +42,7 @@ buildPythonPackage rec { ]; checkInputs = [ - aresponses + aioresponses pytest-asyncio ]; diff --git a/pkgs/development/python-modules/aio-pika/default.nix b/pkgs/development/python-modules/aio-pika/default.nix index 574d386b95deb..65f15fa639d53 100644 --- a/pkgs/development/python-modules/aio-pika/default.nix +++ b/pkgs/development/python-modules/aio-pika/default.nix @@ -7,36 +7,31 @@ , poetry-core , pytestCheckHook , pythonOlder -, setuptools , shortuuid -, typing-extensions , yarl }: buildPythonPackage rec { pname = "aio-pika"; - version = "9.3.1"; + version = "9.4.0"; pyproject = true; - disabled = pythonOlder "3.7"; + disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "mosquito"; repo = "aio-pika"; rev = "refs/tags/${version}"; - hash = "sha256-RbDiJvbFNuXIqFvevLpk5sy5WDinwaWwSqa+XI6Dljo="; + hash = "sha256-EntV/CBvT4II4nxsVe3KjNA4EPV7Oc6h2G0fX0fHKTU="; }; nativeBuildInputs = [ - setuptools poetry-core ]; propagatedBuildInputs = [ aiormq yarl - ] ++ lib.optionals (pythonOlder "3.8") [ - typing-extensions ]; nativeCheckInputs = [ diff --git a/pkgs/development/python-modules/aiocomelit/default.nix b/pkgs/development/python-modules/aiocomelit/default.nix index 5f8ca91e7d41e..77ebaa67b68f6 100644 --- a/pkgs/development/python-modules/aiocomelit/default.nix +++ b/pkgs/development/python-modules/aiocomelit/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "aiocomelit"; - version = "0.7.3"; + version = "0.8.2"; format = "pyproject"; disabled = pythonOlder "3.10"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "chemelli74"; repo = "aiocomelit"; rev = "refs/tags/v${version}"; - hash = "sha256-rtMR3j/DwHVgf4RYXx1Y+W/N8U5pSaLnRwnRmuLbFEY="; + hash = "sha256-SjyC/KiszQVVmctyqCn3i0DureuCtDlUhJTHC6+PQ2c="; }; postPatch = '' diff --git a/pkgs/development/python-modules/aioelectricitymaps/default.nix b/pkgs/development/python-modules/aioelectricitymaps/default.nix index 1c13880ec4971..753a108d93a7c 100644 --- a/pkgs/development/python-modules/aioelectricitymaps/default.nix +++ b/pkgs/development/python-modules/aioelectricitymaps/default.nix @@ -2,8 +2,9 @@ , aiohttp , aresponses , buildPythonPackage -, dataclasses-json , fetchFromGitHub +, mashumaro +, orjson , poetry-core , pytest-asyncio , pytestCheckHook @@ -13,25 +14,31 @@ buildPythonPackage rec { pname = "aioelectricitymaps"; - version = "0.1.6"; + version = "0.3.0"; pyproject = true; - disabled = pythonOlder "3.10"; + disabled = pythonOlder "3.11"; src = fetchFromGitHub { owner = "jpbede"; repo = "aioelectricitymaps"; rev = "refs/tags/v${version}"; - hash = "sha256-SyI+2hxKOiSdx5e+vkHLsIk5xj4gNvmfZTYZ10oJhfc="; + hash = "sha256-saIzVbgYx5nIM5fk7i3wu4X1gOIj81L/rRNq5Xl4cnw="; }; + postPatch = '' + substituteInPlace pyproject.toml \ + --replace-warn "--cov" "" + ''; + nativeBuildInputs = [ poetry-core ]; propagatedBuildInputs = [ aiohttp - dataclasses-json + mashumaro + orjson ]; nativeCheckInputs = [ diff --git a/pkgs/development/python-modules/aioftp/default.nix b/pkgs/development/python-modules/aioftp/default.nix index 290935e8c2ce8..6aa37699ca4a9 100644 --- a/pkgs/development/python-modules/aioftp/default.nix +++ b/pkgs/development/python-modules/aioftp/default.nix @@ -6,32 +6,48 @@ , pytest-asyncio , pytestCheckHook , pythonOlder +, setuptools , siosocks , trustme }: buildPythonPackage rec { pname = "aioftp"; - version = "0.21.4"; - format = "setuptools"; + version = "0.22.3"; + pyproject = true; - disabled = pythonOlder "3.7"; + disabled = pythonOlder "3.11"; src = fetchPypi { inherit pname version; - hash = "sha256-KLsm1GFsfDgaFUMoH5hwUbjS0dW/rwI9nn4sIQXFG7k="; + hash = "sha256-uqKxMYaqAWIuS4LyfC9I9Nr7SORXprGPzamakl4NwnA="; }; + postPatch = '' + substituteInPlace pyproject.toml \ + --replace " --cov" "" + ''; + + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ siosocks ]; + passthru.optional-dependencies = { + socks = [ + siosocks + ]; + }; + nativeCheckInputs = [ async-timeout pytest-asyncio pytestCheckHook trustme - ]; + ] ++ lib.flatten (builtins.attrValues passthru.optional-dependencies); disabledTests = lib.optionals stdenv.isDarwin [ # uses 127.0.0.2, which macos doesn't like @@ -44,7 +60,7 @@ buildPythonPackage rec { meta = with lib; { description = "Python FTP client/server for asyncio"; - homepage = "https://github.com/aio-libs/aioftp"; + homepage = "https://aioftp.readthedocs.io/"; license = licenses.asl20; maintainers = with maintainers; [ ]; }; diff --git a/pkgs/development/python-modules/aiogithubapi/default.nix b/pkgs/development/python-modules/aiogithubapi/default.nix index 3eb23c4a66419..59367acb041ad 100644 --- a/pkgs/development/python-modules/aiogithubapi/default.nix +++ b/pkgs/development/python-modules/aiogithubapi/default.nix @@ -15,23 +15,26 @@ buildPythonPackage rec { pname = "aiogithubapi"; version = "23.11.0"; - format = "pyproject"; + pyproject = true; disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "ludeeus"; - repo = pname; + repo = "aiogithubapi"; rev = "refs/tags/${version}"; hash = "sha256-SbpfHKD4QJuCe3QG0GTvsffkuFiGPLEUXOVW9f1gyTI="; }; + __darwinAllowLocalNetworking = true; + postPatch = '' # Upstream is releasing with the help of a CI to PyPI, GitHub releases # are not in their focus substituteInPlace pyproject.toml \ --replace 'version = "0"' 'version = "${version}"' \ - --replace 'backoff = "^1.10.0"' 'backoff = "*"' + --replace 'backoff = "^1.10.0"' 'backoff = "*"' \ + --replace 'sigstore = "<2"' 'sigstore = "*"' ''; nativeBuildInputs = [ @@ -55,10 +58,19 @@ buildPythonPackage rec { "--asyncio-mode=auto" ]; + preCheck = '' + export HOME=$(mktemp -d) + ''; + pythonImportsCheck = [ "aiogithubapi" ]; + disabledTests = [ + # sigstore.errors.TUFError: Failed to refresh TUF metadata + "test_sigstore" + ]; + meta = with lib; { description = "Python client for the GitHub API"; homepage = "https://github.com/ludeeus/aiogithubapi"; diff --git a/pkgs/development/python-modules/aiogram/default.nix b/pkgs/development/python-modules/aiogram/default.nix index 0dc72bc2006ab..e2da72982ca8b 100644 --- a/pkgs/development/python-modules/aiogram/default.nix +++ b/pkgs/development/python-modules/aiogram/default.nix @@ -22,7 +22,7 @@ buildPythonPackage rec { pname = "aiogram"; - version = "3.2.0"; + version = "3.3.0"; pyproject = true; disabled = pythonOlder "3.7"; @@ -31,7 +31,7 @@ buildPythonPackage rec { owner = "aiogram"; repo = "aiogram"; rev = "refs/tags/v${version}"; - hash = "sha256-8SYrg+gfNSTR0CTPf4cYDa4bfA0LPBmZtPcATF22fqw="; + hash = "sha256-TD4pDmM899zBOxllM0iju2u6IhmXxLYWBpjfWhewVFc="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/aiohomekit/default.nix b/pkgs/development/python-modules/aiohomekit/default.nix index ffab6af2b8f41..8ea84581873a1 100644 --- a/pkgs/development/python-modules/aiohomekit/default.nix +++ b/pkgs/development/python-modules/aiohomekit/default.nix @@ -20,7 +20,7 @@ buildPythonPackage rec { pname = "aiohomekit"; - version = "3.1.2"; + version = "3.1.4"; pyproject = true; disabled = pythonOlder "3.10"; @@ -29,7 +29,7 @@ buildPythonPackage rec { owner = "Jc2k"; repo = "aiohomekit"; rev = "refs/tags/${version}"; - hash = "sha256-GepXC3u37NuTWCoecUkR1+Ic/5ztn3f6cUlalZ0Na4o="; + hash = "sha256-hZhbmEEqmhvoxGD4hvy4SDQWG5Xk1cmzFDSNa742iMs="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/aiolifx-themes/default.nix b/pkgs/development/python-modules/aiolifx-themes/default.nix index 593d1e77b460d..8a10eb3cdb9b5 100644 --- a/pkgs/development/python-modules/aiolifx-themes/default.nix +++ b/pkgs/development/python-modules/aiolifx-themes/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "aiolifx-themes"; - version = "0.4.11"; + version = "0.4.12"; pyproject = true; disabled = pythonOlder "3.9"; @@ -21,7 +21,7 @@ buildPythonPackage rec { owner = "Djelibeybi"; repo = "aiolifx-themes"; rev = "refs/tags/v${version}"; - hash = "sha256-pldmkdkDI6RFMcBOF1MtQBddOo+uF23CMHPztEV+kf0="; + hash = "sha256-dV8xLZQaWiCSqXsY45vme4IMPT6UDmeAOkxEEU5UIW4="; }; prePatch = '' diff --git a/pkgs/development/python-modules/aiolifx/default.nix b/pkgs/development/python-modules/aiolifx/default.nix index 9bda581ff39f4..852f50fa93a36 100644 --- a/pkgs/development/python-modules/aiolifx/default.nix +++ b/pkgs/development/python-modules/aiolifx/default.nix @@ -12,14 +12,14 @@ buildPythonPackage rec { pname = "aiolifx"; - version = "1.0.0"; + version = "1.0.1"; pyproject = true; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-2lWC2eTYh/YX0Pn3W11uVqqT2ycsa993siiDR2BV4qU="; + hash = "sha256-r42M7aqKKLdGgRaCym44M1nvu0vTGK7ricBp/AsbFRk="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/aiomqtt/default.nix b/pkgs/development/python-modules/aiomqtt/default.nix index c7d7b5dd7a99e..634c031cbd748 100644 --- a/pkgs/development/python-modules/aiomqtt/default.nix +++ b/pkgs/development/python-modules/aiomqtt/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "aiomqtt"; - version = "1.2.1"; + version = "2.0.0"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -21,7 +21,7 @@ buildPythonPackage rec { owner = "sbtinstruments"; repo = "aiomqtt"; rev = "refs/tags/v${version}"; - hash = "sha256-P8p21wjmFDvI0iobpQsWkKYleY4M0R3yod3/mJ7V+Og="; + hash = "sha256-Ww4NdCtT04b4tRmarJjB4xmfRBNIQekP8iARAdpmBH0="; }; nativeBuildInputs = [ @@ -50,7 +50,7 @@ buildPythonPackage rec { meta = with lib; { description = "The idiomatic asyncio MQTT client, wrapped around paho-mqtt"; homepage = "https://github.com/sbtinstruments/aiomqtt"; - changelog = "https://github.com/sbtinstruments/aiomqtt/blob/${version}/CHANGELOG.md"; + changelog = "https://github.com/sbtinstruments/aiomqtt/blob/${src.rev}/CHANGELOG.md"; license = licenses.bsd3; maintainers = with maintainers; [ ]; }; diff --git a/pkgs/development/python-modules/aioopenexchangerates/default.nix b/pkgs/development/python-modules/aioopenexchangerates/default.nix index 1cfee59a00031..6f18127ed167b 100644 --- a/pkgs/development/python-modules/aioopenexchangerates/default.nix +++ b/pkgs/development/python-modules/aioopenexchangerates/default.nix @@ -1,7 +1,7 @@ { lib , aiohttp , aioresponses -, pydantic +, pydantic_1 , buildPythonPackage , fetchFromGitHub , poetry-core @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "aioopenexchangerates"; - version = "0.4.5"; + version = "0.4.8"; pyproject = true; disabled = pythonOlder "3.9"; @@ -21,7 +21,7 @@ buildPythonPackage rec { owner = "MartinHjelmare"; repo = "aioopenexchangerates"; rev = "refs/tags/v${version}"; - hash = "sha256-4mvd5G4qpebocg74Kz/+XtJovDnGJJYPigyhke9YDjA="; + hash = "sha256-qwqhbHp4JPsbA6g7SI2frtqhayCmA1s3pTW2S4r6gmw="; }; postPatch = '' @@ -35,7 +35,7 @@ buildPythonPackage rec { propagatedBuildInputs = [ aiohttp - pydantic + pydantic_1 ]; nativeCheckInputs = [ diff --git a/pkgs/development/python-modules/aiooss2/default.nix b/pkgs/development/python-modules/aiooss2/default.nix index 0c0e512dae984..2d30e0422ef3f 100644 --- a/pkgs/development/python-modules/aiooss2/default.nix +++ b/pkgs/development/python-modules/aiooss2/default.nix @@ -15,7 +15,7 @@ buildPythonPackage rec { pname = "aiooss2"; - version = "0.2.8"; + version = "0.2.9"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -24,7 +24,7 @@ buildPythonPackage rec { owner = "karajan1001"; repo = "aiooss2"; rev = "refs/tags/${version}"; - hash = "sha256-PwgbUZAuk2woEmLYDdWF5hTs19DASxxUv3Ga844ai7g="; + hash = "sha256-LdH04pRioxpHY1amRO90l9l5540IsDxmQcrEUVSq8dk="; }; pythonRelaxDeps = [ diff --git a/pkgs/development/python-modules/aiopvapi/default.nix b/pkgs/development/python-modules/aiopvapi/default.nix index 710421cd366ee..1a5689f3df439 100644 --- a/pkgs/development/python-modules/aiopvapi/default.nix +++ b/pkgs/development/python-modules/aiopvapi/default.nix @@ -1,16 +1,16 @@ { lib , aiohttp -, async-timeout , buildPythonPackage , fetchFromGitHub , pytestCheckHook , pythonOlder +, setuptools }: buildPythonPackage rec { pname = "aiopvapi"; version = "3.0.1"; - format = "setuptools"; + pyproject = true; disabled = pythonOlder "3.7"; @@ -21,9 +21,18 @@ buildPythonPackage rec { hash = "sha256-+jhfp8gLEmL8TGPPN7QY8lw1SkV4sMSDb4VSq2OJ6PU="; }; + postPatch = '' + # https://github.com/sander76/aio-powerview-api/pull/31 + substituteInPlace setup.py \ + --replace '"asyncio", ' "" + ''; + + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ aiohttp - async-timeout ]; nativeCheckInputs = [ @@ -34,9 +43,20 @@ buildPythonPackage rec { "aiopvapi" ]; + disabledTestPaths = [ + # https://github.com/sander76/aio-powerview-api/issues/32 + "tests/test_shade.py" + "tests/test_scene.py" + "tests/test_room.py" + "tests/test_apiresource.py" + "tests/test_hub.py" + "tests/test_scene_members.py" + ]; + meta = with lib; { description = "Python API for the PowerView API"; homepage = "https://github.com/sander76/aio-powerview-api"; + changelog = "https://github.com/sander76/aio-powerview-api/releases/tag/v${version}"; license = with licenses; [ bsd3 ]; maintainers = with maintainers; [ fab ]; }; diff --git a/pkgs/development/python-modules/aioquic-mitmproxy/default.nix b/pkgs/development/python-modules/aioquic-mitmproxy/default.nix deleted file mode 100644 index 75ccd60727416..0000000000000 --- a/pkgs/development/python-modules/aioquic-mitmproxy/default.nix +++ /dev/null @@ -1,56 +0,0 @@ -{ lib -, buildPythonPackage -, certifi -, cryptography -, fetchFromGitHub -, pylsqpack -, pyopenssl -, pytestCheckHook -, pythonOlder -, service-identity -, setuptools -, wheel -}: - -buildPythonPackage rec { - pname = "aioquic-mitmproxy"; - version = "0.9.21.1"; - pyproject = true; - - disabled = pythonOlder "3.8"; - - src = fetchFromGitHub { - owner = "meitinger"; - repo = "aioquic_mitmproxy"; - rev = "refs/tags/${version}"; - hash = "sha256-eD3eICE9jS1jyqMgWwcv6w3gkR0EyGcKwgSXhasXNeA="; - }; - - nativeBuildInputs = [ - setuptools - wheel - ]; - - propagatedBuildInputs = [ - certifi - cryptography - pylsqpack - pyopenssl - service-identity - ]; - - nativeCheckInputs = [ - pytestCheckHook - ]; - - pythonImportsCheck = [ - "aioquic" - ]; - - meta = with lib; { - description = "QUIC and HTTP/3 implementation in Python"; - homepage = "https://github.com/meitinger/aioquic_mitmproxy"; - license = licenses.bsd3; - maintainers = with maintainers; [ fab ]; - }; -} diff --git a/pkgs/development/python-modules/aioquic/default.nix b/pkgs/development/python-modules/aioquic/default.nix index fc0fe63de4e5b..0d9801df1f82f 100644 --- a/pkgs/development/python-modules/aioquic/default.nix +++ b/pkgs/development/python-modules/aioquic/default.nix @@ -1,6 +1,7 @@ { lib , buildPythonPackage , certifi +, cryptography , fetchPypi , openssl , pylsqpack @@ -13,14 +14,14 @@ buildPythonPackage rec { pname = "aioquic"; - version = "0.9.23"; + version = "0.9.25"; pyproject = true; disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; - hash = "sha256-UsnaYO0IN/6LimoNfc8N++vsjpoCfhDr9yBPBWnFj6g="; + hash = "sha256-cHlceJBTJthVwq5SQHIjSq5YbHibgSkuJy0CHpsEMKM="; }; nativeBuildInputs = [ @@ -29,6 +30,7 @@ buildPythonPackage rec { propagatedBuildInputs = [ certifi + cryptography pylsqpack pyopenssl service-identity diff --git a/pkgs/development/python-modules/aioridwell/default.nix b/pkgs/development/python-modules/aioridwell/default.nix index 63f14b1991315..6598b42ed8bfe 100644 --- a/pkgs/development/python-modules/aioridwell/default.nix +++ b/pkgs/development/python-modules/aioridwell/default.nix @@ -18,7 +18,7 @@ buildPythonPackage rec { pname = "aioridwell"; - version = "2023.12.0"; + version = "2024.01.0"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -27,7 +27,7 @@ buildPythonPackage rec { owner = "bachya"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-Lg5O9xwEEgGFIrQoS4r4EMmYDX3yAkcMwHNMHMhLapI="; + hash = "sha256-B5k8uXDHq0U6fJVW8oy2sWUj5OIVGUfe9EtCjnIr3OE="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/aiormq/default.nix b/pkgs/development/python-modules/aiormq/default.nix index 14c0d0f7b5133..214ffc714ee63 100644 --- a/pkgs/development/python-modules/aiormq/default.nix +++ b/pkgs/development/python-modules/aiormq/default.nix @@ -3,6 +3,7 @@ , buildPythonPackage , fetchFromGitHub , pythonOlder +, pythonRelaxDepsHook , pytestCheckHook , pamqp , yarl @@ -11,21 +12,25 @@ buildPythonPackage rec { pname = "aiormq"; - version = "6.7.6"; - format = "pyproject"; + version = "6.8.0"; + pyproject = true; - disabled = pythonOlder "3.7"; + disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "mosquito"; repo = "aiormq"; - # https://github.com/mosquito/aiormq/issues/189 - rev = "72c44f55313fc14e2a760a45a09831237b64c48d"; - hash = "sha256-IIlna8aQY6bIA7OZHthfvMFFWnf3DDRBP1uiFCD7+Do="; + rev = "refs/tags/${version}"; + hash = "sha256-XD1g4JXQJlJyXuZbo4hYW7cwQhy8+p4/inwNw2WOD9Y="; }; nativeBuildInputs = [ poetry-core + pythonRelaxDepsHook + ]; + + pythonRelaxDeps = [ + "pamqp" ]; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/aiortm/default.nix b/pkgs/development/python-modules/aiortm/default.nix index dbbaea2d3903d..e1e4f7fabaf71 100644 --- a/pkgs/development/python-modules/aiortm/default.nix +++ b/pkgs/development/python-modules/aiortm/default.nix @@ -15,7 +15,7 @@ buildPythonPackage rec { pname = "aiortm"; - version = "0.8.7"; + version = "0.8.10"; pyproject = true; disabled = pythonOlder "3.9"; @@ -24,12 +24,12 @@ buildPythonPackage rec { owner = "MartinHjelmare"; repo = "aiortm"; rev = "refs/tags/v${version}"; - hash = "sha256-rWULiyQGBA01hWfRDulDuHX0c1LPo6CTZ9HFOn3MD+E="; + hash = "sha256-WkVuuvWWdj2McdXl+XwYukUcloehelFIi6QL5LSkfLk="; }; postPatch = '' substituteInPlace pyproject.toml \ - --replace " --cov=aiortm --cov-report=term-missing:skip-covered" "" + --replace-warn " --cov=aiortm --cov-report=term-missing:skip-covered" "" ''; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/aiorwlock/default.nix b/pkgs/development/python-modules/aiorwlock/default.nix index b72d69e8fd31e..87fab70a03f32 100644 --- a/pkgs/development/python-modules/aiorwlock/default.nix +++ b/pkgs/development/python-modules/aiorwlock/default.nix @@ -8,12 +8,12 @@ buildPythonPackage rec { pname = "aiorwlock"; - version = "1.3.0"; + version = "1.4.0"; format = "setuptools"; src = fetchPypi { inherit pname version; - hash = "sha256-g/Eth99LlyiguP2hdWWFqw1lKxB7q1nGCE4bGtaSq0U="; + hash = "sha256-TOpb7E6dA1M6JpGSmTlIIqFCKqUZvKndCReOxJD40cw="; }; nativeCheckInputs = [ diff --git a/pkgs/development/python-modules/aioshelly/default.nix b/pkgs/development/python-modules/aioshelly/default.nix index 9c53be328f507..832bd768a8bd4 100644 --- a/pkgs/development/python-modules/aioshelly/default.nix +++ b/pkgs/development/python-modules/aioshelly/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "aioshelly"; - version = "7.0.0"; + version = "7.1.0"; format = "setuptools"; disabled = pythonOlder "3.9"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "home-assistant-libs"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-+sE/nppRu6XTvXzWlXc+4clLOI/KvVdfRDl9FUhy8fg="; + hash = "sha256-W8oAJ7q4cAWq+RF4Hwd8cuPkEZQorsBnjmos5tVSBzc="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/aiosql/default.nix b/pkgs/development/python-modules/aiosql/default.nix index fd9681a2d759e..165342fec1d90 100644 --- a/pkgs/development/python-modules/aiosql/default.nix +++ b/pkgs/development/python-modules/aiosql/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "aiosql"; - version = "9.1"; + version = "9.3"; pyproject = true; disabled = pythonOlder "3.8"; @@ -27,7 +27,7 @@ buildPythonPackage rec { owner = "nackjicholson"; repo = "aiosql"; rev = "refs/tags/${version}"; - hash = "sha256-xcrNnp3ZfWLbz+/77N3R5x7N2n7nPcw0khqaIeHn0+Y="; + hash = "sha256-7bCJykE+7/eA1h4L5MyH/zVPZVMt7cNLXZSWq+8mPtY="; }; sphinxRoot = "docs/source"; @@ -48,7 +48,9 @@ buildPythonPackage rec { pytestCheckHook ]; - pythonImportsCheck = [ "aiosql" ]; + pythonImportsCheck = [ + "aiosql" + ]; meta = with lib; { description = "Simple SQL in Python"; diff --git a/pkgs/development/python-modules/aioswitcher/default.nix b/pkgs/development/python-modules/aioswitcher/default.nix index 7cb513897cb1f..245f9f44a3aeb 100644 --- a/pkgs/development/python-modules/aioswitcher/default.nix +++ b/pkgs/development/python-modules/aioswitcher/default.nix @@ -14,8 +14,8 @@ buildPythonPackage rec { pname = "aioswitcher"; - version = "3.4.1"; - format = "pyproject"; + version = "3.4.2"; + pyproject = true; disabled = pythonOlder "3.9"; @@ -23,9 +23,11 @@ buildPythonPackage rec { owner = "TomerFi"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-jam0pyVajk8z7s/Uk5yQZfbFQLDiJ2yRKDk7VMJpCKo="; + hash = "sha256-UpwIzwOl1yKqK8KxFDXAWoZFkQ+1r1sUcDfx6AxRdNw="; }; + __darwinAllowLocalNetworking = true; + nativeBuildInputs = [ poetry-core ]; @@ -50,7 +52,6 @@ buildPythonPackage rec { "test_schedule_parser_with_a_daily_recurring_enabled_schedule_data" "test_schedule_parser_with_a_partial_daily_recurring_enabled_schedule_data" "test_schedule_parser_with_a_non_recurring_enabled_schedule_data" - "test_hexadecimale_timestamp_to_localtime_with_the_current_timestamp_should_return_a_time_string" ]; pythonImportsCheck = [ diff --git a/pkgs/development/python-modules/aiounifi/default.nix b/pkgs/development/python-modules/aiounifi/default.nix index f88afc0558396..cf1615734d202 100644 --- a/pkgs/development/python-modules/aiounifi/default.nix +++ b/pkgs/development/python-modules/aiounifi/default.nix @@ -11,21 +11,20 @@ , segno , setuptools , trustme -, wheel }: buildPythonPackage rec { pname = "aiounifi"; - version = "68"; - format = "pyproject"; + version = "69"; + pyproject = true; disabled = pythonOlder "3.11"; src = fetchFromGitHub { owner = "Kane610"; - repo = pname; + repo = "aiounifi"; rev = "refs/tags/v${version}"; - hash = "sha256-fMTkk2+4RQzE8V4Nemkh2/0Keum+3eMKO5LlPQB9kOU="; + hash = "sha256-XYwdnG3OprHRZm3zQgoPw4VOzvvVflsQzi7+XQiASAU="; }; postPatch = '' @@ -38,7 +37,6 @@ buildPythonPackage rec { nativeBuildInputs = [ setuptools - wheel ]; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/aiovodafone/default.nix b/pkgs/development/python-modules/aiovodafone/default.nix index bd9dc3ede2dc9..cd19fc80327b4 100644 --- a/pkgs/development/python-modules/aiovodafone/default.nix +++ b/pkgs/development/python-modules/aiovodafone/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "aiovodafone"; - version = "0.5.1"; + version = "0.5.4"; pyproject = true; disabled = pythonOlder "3.10"; @@ -19,7 +19,7 @@ buildPythonPackage rec { owner = "chemelli74"; repo = "aiovodafone"; rev = "refs/tags/v${version}"; - hash = "sha256-4Pcdf5yAzjXbmWehon9DdZfaIdEjPLcdzf/EjYKEamk="; + hash = "sha256-J2VdRxCzIjRUOqQW4YzOC8RRth9tibBS9YuizveqhhI="; }; postPatch = '' @@ -47,7 +47,7 @@ buildPythonPackage rec { meta = with lib; { description = "Library to control Vodafon Station"; homepage = "https://github.com/chemelli74/aiovodafone"; - changelog = "https://github.com/chemelli74/aiovodafone/blob/${version}/CHANGELOG.md"; + changelog = "https://github.com/chemelli74/aiovodafone/blob/v${version}/CHANGELOG.md"; license = licenses.asl20; maintainers = with maintainers; [ fab ]; }; diff --git a/pkgs/development/python-modules/airthings-ble/default.nix b/pkgs/development/python-modules/airthings-ble/default.nix index eec4830837f03..aa418733a6ccd 100644 --- a/pkgs/development/python-modules/airthings-ble/default.nix +++ b/pkgs/development/python-modules/airthings-ble/default.nix @@ -1,16 +1,18 @@ { lib +, async-interrupt , bleak , bleak-retry-connector , buildPythonPackage , fetchFromGitHub , poetry-core +, pytestCheckHook , pythonOlder }: buildPythonPackage rec { pname = "airthings-ble"; - version = "0.5.6-4"; - format = "pyproject"; + version = "0.6.1"; + pyproject = true; disabled = pythonOlder "3.9"; @@ -18,12 +20,12 @@ buildPythonPackage rec { owner = "vincegio"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-Ft5A2ZGVH9VHoRDAqDcc0rBfnQRxoXMylCAwUSwmViE="; + hash = "sha256-A7Nrg0O+WVoHP+m8pz6idnNcxulwPYmMt9DfhKTHG24="; }; postPatch = '' substituteInPlace pyproject.toml \ - --replace 'bleak-retry-connector = "^0.15.1"' 'bleak = "*"' + --replace "-v -Wdefault --cov=airthings_ble --cov-report=term-missing:skip-covered" "" ''; nativeBuildInputs = [ @@ -31,12 +33,14 @@ buildPythonPackage rec { ]; propagatedBuildInputs = [ + async-interrupt bleak bleak-retry-connector ]; - # Module has no tests - doCheck = false; + nativeCheckInputs = [ + pytestCheckHook + ]; pythonImportsCheck = [ "airthings_ble" diff --git a/pkgs/development/python-modules/ale-py/default.nix b/pkgs/development/python-modules/ale-py/default.nix index 77978654e68f8..9cc5f6105cf59 100644 --- a/pkgs/development/python-modules/ale-py/default.nix +++ b/pkgs/development/python-modules/ale-py/default.nix @@ -2,7 +2,7 @@ , SDL2 , cmake , fetchFromGitHub -, git +, fetchpatch , gym , importlib-metadata , importlib-resources @@ -11,7 +11,6 @@ , numpy , pybind11 , pytestCheckHook -, python , pythonOlder , setuptools , stdenv @@ -23,10 +22,10 @@ buildPythonPackage rec { pname = "ale-py"; version = "0.8.1"; - format = "pyproject"; + pyproject = true; src = fetchFromGitHub { - owner = "mgbellemare"; + owner = "Farama-Foundation"; repo = "Arcade-Learning-Environment"; rev = "refs/tags/v${version}"; hash = "sha256-B2AxhlzvBy1lJ3JttJjImgTjMtEUyZBv+xHU2IC7BVE="; @@ -35,6 +34,20 @@ buildPythonPackage rec { patches = [ # don't download pybind11, use local pybind11 ./cmake-pybind11.patch + ./patch-sha-check-in-setup.patch + + # The following two patches add the required `include <cstdint>` for compilation to work with GCC 13. + # See https://github.com/Farama-Foundation/Arcade-Learning-Environment/pull/503 + (fetchpatch { + name = "fix-gcc13-compilation-1"; + url = "https://github.com/Farama-Foundation/Arcade-Learning-Environment/commit/ebd64c03cdaa3d8df7da7c62ec3ae5795105e27a.patch"; + hash = "sha256-NMz0hw8USOj88WryHRkMQNWznnP6+5aWovEYNuocQ2c="; + }) + (fetchpatch { + name = "fix-gcc13-compilation-2"; + url = "https://github.com/Farama-Foundation/Arcade-Learning-Environment/commit/4c99c7034f17810f3ff6c27436bfc3b40d08da21.patch"; + hash = "sha256-66/bDCyMr1RsKk63T9GnFZGloLlkdr/bf5WHtWbX6VY="; + }) ]; nativeBuildInputs = [ @@ -67,7 +80,7 @@ buildPythonPackage rec { substituteInPlace pyproject.toml \ --replace 'dynamic = ["version"]' 'version = "${version}"' substituteInPlace setup.py \ - --replace 'subprocess.check_output(["git", "rev-parse", "--short", "HEAD"], cwd=here)' 'b"${src.rev}"' + --replace '@sha@' '"${version}"' ''; dontUseCmakeConfigure = true; diff --git a/pkgs/development/python-modules/ale-py/patch-sha-check-in-setup.patch b/pkgs/development/python-modules/ale-py/patch-sha-check-in-setup.patch new file mode 100644 index 0000000000000..f387346ded379 --- /dev/null +++ b/pkgs/development/python-modules/ale-py/patch-sha-check-in-setup.patch @@ -0,0 +1,17 @@ +diff --git a/setup.py b/setup.py +index ff1b1c5..ce40df0 100644 +--- a/setup.py ++++ b/setup.py +@@ -141,11 +141,7 @@ def parse_version(version_file): + + version = ci_version + else: +- sha = ( +- subprocess.check_output(["git", "rev-parse", "--short", "HEAD"], cwd=here) +- .decode("ascii") +- .strip() +- ) ++ sha = @sha@ + version += f"+{sha}" + + return version diff --git a/pkgs/development/python-modules/alive-progress/default.nix b/pkgs/development/python-modules/alive-progress/default.nix index b10b056f292a0..58ccedd26d6c0 100644 --- a/pkgs/development/python-modules/alive-progress/default.nix +++ b/pkgs/development/python-modules/alive-progress/default.nix @@ -5,20 +5,28 @@ , fetchFromGitHub , grapheme , pytestCheckHook +, pythonOlder +, setuptools }: buildPythonPackage rec { pname = "alive-progress"; - version = "3.1.4"; - format = "setuptools"; + version = "3.1.5"; + pyproject = true; + + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "rsalmei"; - repo = pname; - rev = "v${version}"; - hash = "sha256-27PgxQ9nw8p5hfaSf/jPYG7419o3i8B8R09o93szSOk="; + repo = "alive-progress"; + rev = "refs/tags/v${version}"; + hash = "sha256-yJhl0QrMHET9ISDc/D5AEQ7dTJkmcV2SWqy/xmG18uY="; }; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ about-time grapheme @@ -36,6 +44,7 @@ buildPythonPackage rec { meta = with lib; { description = "A new kind of Progress Bar, with real-time throughput, ETA, and very cool animations"; homepage = "https://github.com/rsalmei/alive-progress"; + changelog = "https://github.com/rsalmei/alive-progress/blob/v${version}/CHANGELOG.md"; license = licenses.mit; maintainers = with maintainers; [ thiagokokada ]; }; diff --git a/pkgs/development/python-modules/aliyun-python-sdk-iot/default.nix b/pkgs/development/python-modules/aliyun-python-sdk-iot/default.nix index 2a753b4251034..2f08429d54d78 100644 --- a/pkgs/development/python-modules/aliyun-python-sdk-iot/default.nix +++ b/pkgs/development/python-modules/aliyun-python-sdk-iot/default.nix @@ -7,14 +7,14 @@ buildPythonPackage rec { pname = "aliyun-python-sdk-iot"; - version = "8.57.0"; + version = "8.59.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-Ea0IUn2mlu0c7QYJZkUrBUrtjUuTHoTeuvZHw/il+4A="; + hash = "sha256-v0jTMKtYrbEBVjHQokpWSlcJBALZFsuoYHq8wCP8w1E="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/anova-wifi/default.nix b/pkgs/development/python-modules/anova-wifi/default.nix index b6f885daf6194..a94ef0e3d624a 100644 --- a/pkgs/development/python-modules/anova-wifi/default.nix +++ b/pkgs/development/python-modules/anova-wifi/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "anova-wifi"; - version = "0.10.3"; + version = "0.11.6"; pyproject = true; disabled = pythonOlder "3.10"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "Lash-L"; repo = "anova_wifi"; rev = "refs/tags/v${version}"; - hash = "sha256-tCmvp29KSCkc+g0w0odcB7vGjtDx6evac7XsHEF0syM="; + hash = "sha256-zRMs0GAsLgKt1R0SfRFPchjmk87K2d8vBeHJs66k9xc="; }; postPatch = '' diff --git a/pkgs/development/python-modules/ansi/default.nix b/pkgs/development/python-modules/ansi/default.nix index 287bf13a5deed..3fb30ebf72558 100644 --- a/pkgs/development/python-modules/ansi/default.nix +++ b/pkgs/development/python-modules/ansi/default.nix @@ -7,14 +7,14 @@ buildPythonPackage rec { pname = "ansi"; - version = "0.3.6"; + version = "0.3.7"; format = "pyproject"; src = fetchFromGitHub { owner = "tehmaze"; repo = pname; - rev = "${pname}-${version}"; - hash = "sha256-2gu2Dba3LOjMhbCCZrBqzlOor5KqDYThhe8OP8J3O2M="; + rev = "refs/tags/ansi-${version}"; + hash = "sha256-PmgB1glksu4roQeZ1o7uilMJNm9xaYqw680N2z+tUUM="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/ansible/core.nix b/pkgs/development/python-modules/ansible/core.nix index 12002f4933c47..dec3ad21bdeb2 100644 --- a/pkgs/development/python-modules/ansible/core.nix +++ b/pkgs/development/python-modules/ansible/core.nix @@ -28,11 +28,11 @@ buildPythonPackage rec { pname = "ansible-core"; - version = "2.15.5"; + version = "2.16.2"; src = fetchPypi { inherit pname version; - hash = "sha256-jMU5y41DSa8//ZAccHIvenogOuZCfdrJX/31RqbkFgI="; + hash = "sha256-5KtVnn5SWxxvmQhPyoc7sBR3XV7L6EW3wHuOnWycBIs="; }; # ansible_connection is already wrapped, so don't pass it through diff --git a/pkgs/development/python-modules/ansible/default.nix b/pkgs/development/python-modules/ansible/default.nix index 42f4d0032cfdf..957c36b8525e3 100644 --- a/pkgs/development/python-modules/ansible/default.nix +++ b/pkgs/development/python-modules/ansible/default.nix @@ -21,7 +21,7 @@ let pname = "ansible"; - version = "9.0.1"; + version = "9.1.0"; in buildPythonPackage { inherit pname version; @@ -31,7 +31,7 @@ buildPythonPackage { src = fetchPypi { inherit pname version; - hash = "sha256-zAbCUfFCg3z1QLeXdyRZapTz0P6dqWGRdeneZTnNBwU="; + hash = "sha256-WtlJkfsODlOncKn/zxtoBH9hsigtlIp9JoLs2PuPob8="; }; postPatch = '' diff --git a/pkgs/development/python-modules/anthropic/default.nix b/pkgs/development/python-modules/anthropic/default.nix index f7a0a8ba63725..0b15d85e2e365 100644 --- a/pkgs/development/python-modules/anthropic/default.nix +++ b/pkgs/development/python-modules/anthropic/default.nix @@ -6,6 +6,7 @@ , distro , dirty-equals , httpx +, google-auth , sniffio , pydantic , pytest-asyncio @@ -18,7 +19,7 @@ buildPythonPackage rec { pname = "anthropic"; - version = "0.7.8"; + version = "0.15.0"; pyproject = true; disabled = pythonOlder "3.8"; @@ -27,7 +28,7 @@ buildPythonPackage rec { owner = "anthropics"; repo = "anthropic-sdk-python"; rev = "refs/tags/v${version}"; - hash = "sha256-1mpNwZJbYdKVmUeUM+PBL6vPhwe8tr2SnAP/t/MMKpI="; + hash = "sha256-cI+CbQir2QpHAb+72clLGG7ZBsrYT3fY14HzxjtKOsk="; }; nativeBuildInputs = [ @@ -44,6 +45,10 @@ buildPythonPackage rec { typing-extensions ]; + passthru.optional-dependencies = { + vertex = [ google-auth ]; + }; + nativeCheckInputs = [ dirty-equals pytest-asyncio @@ -51,8 +56,9 @@ buildPythonPackage rec { respx ]; - disabledTests = [ - "api_resources" + disabledTestPaths = [ + # require network access + "tests/api_resources" ]; pythonImportsCheck = [ diff --git a/pkgs/development/python-modules/anysqlite/default.nix b/pkgs/development/python-modules/anysqlite/default.nix new file mode 100644 index 0000000000000..bf6cb41a79164 --- /dev/null +++ b/pkgs/development/python-modules/anysqlite/default.nix @@ -0,0 +1,51 @@ +{ lib +, anyio +, buildPythonPackage +, fetchFromGitHub +, hatch-fancy-pypi-readme +, hatchling +, pytestCheckHook +, pythonOlder +, trio +}: + +buildPythonPackage rec { + pname = "anysqlite"; + version = "0.0.5"; + pyproject = true; + + disabled = pythonOlder "3.8"; + + src = fetchFromGitHub { + owner = "karpetrosyan"; + repo = "anysqlite"; + rev = "refs/tags/v${version}"; + hash = "sha256-6kNN6kjkMHVNneMq/8zQxqMIXUxH/+eWLX8XhoHqFRU="; + }; + + nativeBuildInputs = [ + hatch-fancy-pypi-readme + hatchling + ]; + + propagatedBuildInputs = [ + anyio + ]; + + nativeCheckInputs = [ + pytestCheckHook + trio + ]; + + pythonImportsCheck = [ + "anysqlite" + ]; + + meta = with lib; { + description = "Sqlite3 for asyncio and trio"; + homepage = "https://github.com/karpetrosyan/anysqlite"; + changelog = "https://github.com/karpetrosyan/anysqlite/blob/${version}/CHANGELOG.md"; + license = licenses.bsd3; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/anywidget/default.nix b/pkgs/development/python-modules/anywidget/default.nix index 16bf2daaa4a47..4d449bbe03032 100644 --- a/pkgs/development/python-modules/anywidget/default.nix +++ b/pkgs/development/python-modules/anywidget/default.nix @@ -14,14 +14,14 @@ buildPythonPackage rec { pname = "anywidget"; - version = "0.8.0"; + version = "0.9.0"; format = "pyproject"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-hHoP7OWOp6MtINzNVKAm3T3Sj3baprTwp0wlPlx8/uw="; + hash = "sha256-fV8yMQ6WGZyyf5c41B0MSwHusVx090SzukqX/WqbqG0="; }; # We do not need the jupyterlab build dependency, because we do not need to diff --git a/pkgs/development/python-modules/aocd-example-parser/default.nix b/pkgs/development/python-modules/aocd-example-parser/default.nix new file mode 100644 index 0000000000000..c2379aa914e15 --- /dev/null +++ b/pkgs/development/python-modules/aocd-example-parser/default.nix @@ -0,0 +1,37 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, flit-core +, pythonOlder +}: + +buildPythonPackage rec { + pname = "aocd-example-parser"; + version = "unstable-2023-12-17"; + pyproject = true; + + disabled = pythonOlder "3.9"; + + src = fetchFromGitHub { + owner = "wimglenn"; + repo = "aocd-example-parser"; + rev = "07330183f3e43401444fe17b08d72eb6168504e1"; + hash = "sha256-iOxqzZj29aY/xyigir1KOU6GcBBvnlxEOBLHChEQjf4="; + }; + + nativeBuildInputs = [ + flit-core + ]; + + # Circular dependency with aocd + # pythonImportsCheck = [ + # "aocd_example_parser" + # ]; + + meta = with lib; { + description = "Default implementation of an example parser plugin for advent-of-code-data"; + homepage = "https://github.com/wimglenn/aocd-example-parser"; + license = licenses.mit; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/aocd/default.nix b/pkgs/development/python-modules/aocd/default.nix index f1a31ee243b88..1b56736028b89 100644 --- a/pkgs/development/python-modules/aocd/default.nix +++ b/pkgs/development/python-modules/aocd/default.nix @@ -1,32 +1,33 @@ { lib , stdenv +, aocd-example-parser +, beautifulsoup4 , buildPythonPackage , fetchFromGitHub -, requests -, pytestCheckHook -, tzlocal -, pytest-mock +, numpy +, pebble +, pook , pytest-freezegun +, pytest-mock , pytest-raisin , pytest-socket +, pytestCheckHook +, python-dateutil +, pythonOlder +, requests , requests-mock -, pook -, numpy , rich -, pebble -, python-dateutil -, termcolor -, beautifulsoup4 , setuptools -, pythonOlder +, termcolor +, tzlocal }: buildPythonPackage rec { pname = "aocd"; version = "2.0.1"; - format = "pyproject"; + pyproject = true; - disabled = pythonOlder "3.7"; + disabled = pythonOlder "3.9"; src = fetchFromGitHub { owner = "wimglenn"; @@ -35,15 +36,30 @@ buildPythonPackage rec { hash = "sha256-YZvcR97uHceloqwoP+azaBmj3GLusYNbItLIaeJ3QD0="; }; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ + aocd-example-parser + beautifulsoup4 + pebble python-dateutil requests + rich # for example parser aoce. must either be here or checkInputs termcolor - beautifulsoup4 - pebble tzlocal - setuptools - rich # for example parser aoce. must either be here or checkInputs + ]; + + nativeCheckInputs = [ + numpy + pook + pytest-freezegun + pytest-mock + pytest-raisin + pytest-socket + pytestCheckHook + requests-mock ]; # Too many failing tests @@ -85,20 +101,6 @@ buildPythonPackage rec { "test_submit_float_warns" ]; - nativeCheckInputs = [ - pytestCheckHook - pytest-mock - pytest-freezegun - pytest-raisin - pytest-socket - ]; - - checkInputs = [ - pook - numpy - requests-mock - ]; - pythonImportsCheck = [ "aocd" ]; diff --git a/pkgs/development/python-modules/apache-beam/default.nix b/pkgs/development/python-modules/apache-beam/default.nix index bd53a6f0b48aa..2e267e2ef191e 100644 --- a/pkgs/development/python-modules/apache-beam/default.nix +++ b/pkgs/development/python-modules/apache-beam/default.nix @@ -150,7 +150,7 @@ buildPythonPackage rec { # Make sure we're running the tests for the actually installed # package, so that cython's .so files are available. - preCheck = "cd $out/lib/${python.libPrefix}/site-packages"; + preCheck = "cd $out/${python.sitePackages}"; disabledTestPaths = [ # Fails with diff --git a/pkgs/development/python-modules/apispec-webframeworks/default.nix b/pkgs/development/python-modules/apispec-webframeworks/default.nix index 3211eed5aa3f0..171deeebda8ca 100644 --- a/pkgs/development/python-modules/apispec-webframeworks/default.nix +++ b/pkgs/development/python-modules/apispec-webframeworks/default.nix @@ -3,6 +3,7 @@ , bottle , buildPythonPackage , fetchFromGitHub +, flit-core , flask , mock , pytestCheckHook @@ -12,18 +13,22 @@ buildPythonPackage rec { pname = "apispec-webframeworks"; - version = "0.5.2"; - format = "setuptools"; + version = "1.0.0"; + pyproject = true; - disabled = pythonOlder "3.7"; + disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "marshmallow-code"; repo = "apispec-webframeworks"; - rev = version; - hash = "sha256-ByNmmBLO99njw9JrT+cCW/K4NJBH92smAiIgg47Cvkk="; + rev = "refs/tags/${version}"; + hash = "sha256-zrsqIZ5ZogZsK1ZOL2uy8igS4T8a+19IwL5dMhKw7OA="; }; + nativeBuildInputs = [ + flit-core + ]; + propagatedBuildInputs = [ apispec ] ++ apispec.optional-dependencies.yaml; diff --git a/pkgs/development/python-modules/apprise/default.nix b/pkgs/development/python-modules/apprise/default.nix index d70a70d43eae1..9d3f55bec2834 100644 --- a/pkgs/development/python-modules/apprise/default.nix +++ b/pkgs/development/python-modules/apprise/default.nix @@ -19,14 +19,14 @@ buildPythonPackage rec { pname = "apprise"; - version = "1.7.1"; + version = "1.7.2"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-jUOdCFUEcFJEJd7e5LyKcnZsIWwhjzdyw3QE6y/Yblo="; + hash = "sha256-CeFZspAI5sjpPX/8PBXUGcC7rkFiBAX48tNDK3Ki6b8="; }; nativeBuildInputs = [ @@ -75,5 +75,6 @@ buildPythonPackage rec { changelog = "https://github.com/caronc/apprise/releases/tag/v${version}"; license = licenses.bsd3; maintainers = with maintainers; [ marsam ]; + mainProgram = "apprise"; }; } diff --git a/pkgs/development/python-modules/approvaltests/default.nix b/pkgs/development/python-modules/approvaltests/default.nix index 6c078914cd939..53ad86c4ea377 100644 --- a/pkgs/development/python-modules/approvaltests/default.nix +++ b/pkgs/development/python-modules/approvaltests/default.nix @@ -5,6 +5,7 @@ , buildPythonPackage , empty-files , fetchFromGitHub +, mock , mrjob , numpy , pyperclip @@ -18,16 +19,16 @@ buildPythonPackage rec { pname = "approvaltests"; - version = "10.2.0"; + version = "10.3.0"; pyproject = true; - disabled = pythonOlder "3.7"; + disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "approvals"; repo = "ApprovalTests.Python"; rev = "refs/tags/v${version}"; - hash = "sha256-2NaqqgrHXJovoVExvbr0s86eRbcxy+DUrsdRH/vak3E="; + hash = "sha256-1f0iTwLREF20Khkd4/xEfxXINJIpc4LfszsvCblS/yM="; }; nativeBuildInputs = [ @@ -39,6 +40,7 @@ buildPythonPackage rec { approval-utilities beautifulsoup4 empty-files + mock mrjob pyperclip pytest diff --git a/pkgs/development/python-modules/appthreat-vulnerability-db/default.nix b/pkgs/development/python-modules/appthreat-vulnerability-db/default.nix index 336a08e0532fc..5101f0fcc0d07 100644 --- a/pkgs/development/python-modules/appthreat-vulnerability-db/default.nix +++ b/pkgs/development/python-modules/appthreat-vulnerability-db/default.nix @@ -17,21 +17,21 @@ buildPythonPackage rec { pname = "appthreat-vulnerability-db"; - version = "5.5.8"; + version = "5.6.1"; pyproject = true; - disabled = pythonOlder "3.7"; + disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "AppThreat"; repo = "vulnerability-db"; rev = "refs/tags/v${version}"; - hash = "sha256-C3A7mNsiTe50jKD98zjU37GL20zw5SNSVte+GtrvbFA="; + hash = "sha256-BkJ1hA4SXuXYkJnSNaZ/JeX+PHdJylfwKkRzQsBxc24="; }; postPatch = '' - substituteInPlace pytest.ini \ - --replace " --cov-append --cov-report term --cov vdb" "" + substituteInPlace pyproject.toml \ + --replace-warn " --cov-report=term-missing --no-cov-on-fail --cov vdb" "" ''; pythonRelaxDeps = [ diff --git a/pkgs/development/python-modules/aranet4/default.nix b/pkgs/development/python-modules/aranet4/default.nix index dda10a9d6f221..49000324ac27b 100644 --- a/pkgs/development/python-modules/aranet4/default.nix +++ b/pkgs/development/python-modules/aranet4/default.nix @@ -5,12 +5,13 @@ , pytestCheckHook , pythonOlder , requests +, setuptools }: buildPythonPackage rec { pname = "aranet4"; - version = "2.2.2"; - format = "setuptools"; + version = "2.2.3"; + pyproject = true; disabled = pythonOlder "3.7"; @@ -18,9 +19,13 @@ buildPythonPackage rec { owner = "Anrijs"; repo = "Aranet4-Python"; rev = "refs/tags/v${version}"; - hash = "sha256-HiveHkGQUCvG4aqK2HSCbONObidT7yof4LzKSJPEOKU="; + hash = "sha256-Jd7yuddxwRrO7XFQsVGy5vRQxwIUZdwFSjiZZHdkE3g="; }; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ bleak requests diff --git a/pkgs/development/python-modules/argilla/default.nix b/pkgs/development/python-modules/argilla/default.nix index a3ffbd076a43f..884502a836834 100644 --- a/pkgs/development/python-modules/argilla/default.nix +++ b/pkgs/development/python-modules/argilla/default.nix @@ -65,7 +65,7 @@ }: let pname = "argilla"; - version = "1.21.0"; + version = "1.23.0"; optional-dependencies = { server = [ fastapi @@ -126,7 +126,7 @@ buildPythonPackage { owner = "argilla-io"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-/CU/8CnoGhxe1tapA9k60o/Bpnaql/6Y/6Ksw5mfk/E="; + hash = "sha256-+Yamol0o2dgQoXbi8RKLn3YOZ2mcTFikPkHZDd3Nnqo="; }; pythonRelaxDeps = [ diff --git a/pkgs/development/python-modules/asf-search/default.nix b/pkgs/development/python-modules/asf-search/default.nix index 74ab082773974..56e2e7fe8991e 100644 --- a/pkgs/development/python-modules/asf-search/default.nix +++ b/pkgs/development/python-modules/asf-search/default.nix @@ -18,7 +18,7 @@ buildPythonPackage rec { pname = "asf-search"; - version = "6.7.3"; + version = "7.0.4"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -27,7 +27,7 @@ buildPythonPackage rec { owner = "asfadmin"; repo = "Discovery-asf_search"; rev = "refs/tags/v${version}"; - hash = "sha256-wtsPnppsW44OdvdkkuyPoqADzpecUytXEc6G4q7HEw0="; + hash = "sha256-eq8VKML50TfOnHZFXr+Ht7FUMm+NHJOksKvv3uMcq3g="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/asn1tools/default.nix b/pkgs/development/python-modules/asn1tools/default.nix index 89abcb1526392..5083b20f3b33f 100644 --- a/pkgs/development/python-modules/asn1tools/default.nix +++ b/pkgs/development/python-modules/asn1tools/default.nix @@ -1,29 +1,34 @@ { lib -, buildPythonPackage -, fetchFromGitHub , bitstruct +, buildPythonPackage , diskcache +, fetchFromGitHub , prompt-toolkit , pyparsing -, python -, pythonOlder +, pytest-xdist , pytestCheckHook +, pythonOlder +, setuptools }: buildPythonPackage rec { pname = "asn1tools"; version = "0.166.0"; - format = "setuptools"; + pyproject = true; disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "eerimoq"; repo = "asn1tools"; - rev = version; + rev = "refs/tags/${version}"; hash = "sha256-TWAOML6nsLX3TYqoQ9fcSjrUmC4byXOfczfkmSaSa0k="; }; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ bitstruct pyparsing @@ -39,17 +44,24 @@ buildPythonPackage rec { }; nativeCheckInputs = [ + pytest-xdist pytestCheckHook ] ++ lib.flatten (builtins.attrValues passthru.optional-depdendencies); - pythonImportsCheck = [ "asn1tools" ]; + disabledTests = [ + # assert exact error message of pyparsing which changed and no longer matches + # https://github.com/eerimoq/asn1tools/issues/167 + "test_parse_error" + ]; + meta = with lib; { description = "ASN.1 parsing, encoding and decoding"; homepage = "https://github.com/eerimoq/asn1tools"; + changelog = "https://github.com/eerimoq/asn1tools/releases/tag/${version}"; license = licenses.mit; maintainers = with maintainers; [ ]; }; diff --git a/pkgs/development/python-modules/asterisk-mbox/default.nix b/pkgs/development/python-modules/asterisk-mbox/default.nix index 4347c42d47dd9..0a08dc737449a 100644 --- a/pkgs/development/python-modules/asterisk-mbox/default.nix +++ b/pkgs/development/python-modules/asterisk-mbox/default.nix @@ -1,19 +1,39 @@ { lib , buildPythonPackage , fetchPypi +, fetchpatch2 +, setuptools +, packaging }: buildPythonPackage rec { pname = "asterisk-mbox"; version = "0.5.0"; - format = "setuptools"; + pyproject = true; src = fetchPypi { pname = "asterisk_mbox"; inherit version; - sha256 = "0624f9ab85ce9c4d43655f8653e8539fa10c81b60fd7b94b1a15dce306c20888"; + hash = "sha256-BiT5q4XOnE1DZV+GU+hTn6EMgbYP17lLGhXc4wbCCIg="; }; + patches = [ + # https://github.com/PhracturedBlue/asterisk_mbox/pull/1 + (fetchpatch2 { + name = "distutils-deprecated.patch"; + url = "https://github.com/PhracturedBlue/asterisk_mbox/commit/bab84525306a0c41aadd3aab4ebba7c062253d07.patch"; + hash = "sha256-2j7jIl3Ydn2dHJhEzu/77Zkxhw58NIebgULifpTVidY="; + }) + ]; + + nativeBuildInputs = [ + setuptools + ]; + + propagatedBuildInputs = [ + packaging + ]; + # no tests implemented doCheck = false; diff --git a/pkgs/development/python-modules/astropy-healpix/default.nix b/pkgs/development/python-modules/astropy-healpix/default.nix index b25fb6e9eb43e..23db660f951bb 100644 --- a/pkgs/development/python-modules/astropy-healpix/default.nix +++ b/pkgs/development/python-modules/astropy-healpix/default.nix @@ -14,13 +14,13 @@ buildPythonPackage rec { pname = "astropy-healpix"; - version = "1.0.1"; + version = "1.0.2"; pyproject = true; src = fetchPypi { inherit version; pname = lib.replaceStrings ["-"] ["_"] pname; - hash = "sha256-74k4vfcpdXw4CowXNHlNc3StAOB2f8Si+mOma+8SYkI="; + hash = "sha256-BW+m7ZOWvtx3HTdNh3zeg9lGCj9ip4/gXb+boDlAMjo="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/async-upnp-client/default.nix b/pkgs/development/python-modules/async-upnp-client/default.nix index 426c0b5bd5488..4d283d1d5ed8e 100644 --- a/pkgs/development/python-modules/async-upnp-client/default.nix +++ b/pkgs/development/python-modules/async-upnp-client/default.nix @@ -22,7 +22,7 @@ buildPythonPackage rec { pname = "async-upnp-client"; - version = "0.38.0"; + version = "0.38.1"; pyproject = true; disabled = pythonOlder "3.8"; @@ -31,7 +31,7 @@ buildPythonPackage rec { owner = "StevenLooman"; repo = "async_upnp_client"; rev = "refs/tags/${version}"; - hash = "sha256-hCgZsoccrHCXTZPnFX5OFhCGnd2WufxWo84jW3k9KiY="; + hash = "sha256-tYGJwmzyVTry3KIMv1JjoBsE6kNw7FJb1nq1+39bEdU="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/asyncclick/default.nix b/pkgs/development/python-modules/asyncclick/default.nix index 2d0066a86e13e..5847a55f83756 100644 --- a/pkgs/development/python-modules/asyncclick/default.nix +++ b/pkgs/development/python-modules/asyncclick/default.nix @@ -10,16 +10,16 @@ buildPythonPackage rec { pname = "asyncclick"; - version = "8.1.3.2"; - format = "setuptools"; + version = "8.1.7.1"; + pyproject = true; - disabled = pythonOlder "3.6"; + disabled = pythonOlder "3.9"; src = fetchFromGitHub { owner = "python-trio"; - repo = pname; - rev = version; - hash = "sha256-by1clF+WAfN/gjOg/F60O1tCZ3qAhWqiiJJY04iMzQ8="; + repo = "asyncclick"; + rev = "refs/tags/${version}"; + hash = "sha256-gx7s/HikvjsXalc0Z73JWMKc1SlhR+kohwk2sW4o19I="; }; nativeBuildInputs = [ @@ -40,15 +40,18 @@ buildPythonPackage rec { ]; disabledTests = [ - # RuntimeWarning: coroutine 'Context.invoke' was never awaited - "test_context_invoke_type" + # AttributeError: 'Context' object has no attribute '_ctx_mgr' + "test_context_pushing" ]; - pythonImportsCheck = [ "asyncclick" ]; + pythonImportsCheck = [ + "asyncclick" + ]; meta = with lib; { description = "Python composable command line utility"; homepage = "https://github.com/python-trio/asyncclick"; + changelog = "https://github.com/python-trio/asyncclick/blob/${version}/CHANGES.rst"; license = with licenses; [ bsd3 ]; maintainers = with maintainers; [ fab ]; }; diff --git a/pkgs/development/python-modules/asyncinotify/default.nix b/pkgs/development/python-modules/asyncinotify/default.nix index feb778c729aaf..6fe187bfc3cf1 100644 --- a/pkgs/development/python-modules/asyncinotify/default.nix +++ b/pkgs/development/python-modules/asyncinotify/default.nix @@ -1,35 +1,45 @@ { lib , buildPythonPackage -, fetchFromGitLab +, fetchFromGitHub , flit-core -, python +, pytestCheckHook +, pythonOlder }: buildPythonPackage rec { pname = "asyncinotify"; - version = "4.0.2"; - format = "pyproject"; + version = "4.0.6"; + pyproject = true; - src = fetchFromGitLab { - owner = "Taywee"; + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "absperf"; repo = "asyncinotify"; - rev = "v${version}"; - hash = "sha256-Q7b406UENCmD9SGbaml+y2YLDi7VLZBmDkYMo8CLuVw="; + rev = "refs/tags/v${version}"; + hash = "sha256-RXx6i5dIB2oySVaLoHPRGD9VKgiO5OAXmrzVBq8Ad18="; }; nativeBuildInputs = [ flit-core ]; - checkPhase = '' - ${python.pythonOnBuildForHost.interpreter} ${src}/test.py - ''; - pythonImportsCheck = ["asyncinotify"]; + nativeCheckInputs = [ + pytestCheckHook + ]; + + pythonImportsCheck = [ + "asyncinotify" + ]; + + pytestFlagsArray = [ + "test.py" + ]; meta = with lib; { - description = "A simple optionally-async python inotify library, focused on simplicity of use and operation, and leveraging modern Python features"; - homepage = "https://pypi.org/project/asyncinotify/"; - changelog = "https://gitlab.com/Taywee/asyncinotify/-/blob/master/CHANGELOG.md"; + description = "Module for inotify"; + homepage = "https://github.com/absperf/asyncinotify/"; + changelog = "https://github.com/absperf/asyncinotify/releases/tag/v${version}"; license = licenses.mit; maintainers = with maintainers; [ cynerd ]; }; diff --git a/pkgs/development/python-modules/asyncsleepiq/default.nix b/pkgs/development/python-modules/asyncsleepiq/default.nix index ed5e17edddb85..25969661bf15d 100644 --- a/pkgs/development/python-modules/asyncsleepiq/default.nix +++ b/pkgs/development/python-modules/asyncsleepiq/default.nix @@ -8,14 +8,14 @@ buildPythonPackage rec { pname = "asyncsleepiq"; - version = "1.4.1"; + version = "1.5.3"; pyproject = true; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-FDGNRBa45Q/L8468C3mZLEPduo9EpHWczO5z3Fe7Nwc="; + hash = "sha256-TDHFKLifNmmAVvD5DjSopEXFbR+KPMIdSA+rLAKrfpI="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/atom/default.nix b/pkgs/development/python-modules/atom/default.nix index b6be40bc6c93c..519fc3791d798 100644 --- a/pkgs/development/python-modules/atom/default.nix +++ b/pkgs/development/python-modules/atom/default.nix @@ -10,16 +10,16 @@ buildPythonPackage rec { pname = "atom"; - version = "0.10.3"; - format = "pyproject"; + version = "0.10.4"; + pyproject = true; disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "nucleic"; - repo = pname; + repo = "atom"; rev = "refs/tags/${version}"; - hash = "sha256-NXjvRVYcWU9p7b8y2ICOzYe6TeMh1S70Edy/JvTG7a4="; + hash = "sha256-HoUKU6z+6PPBUsvI4earZG9UXN0PrugAxu/F7WUfUe8="; }; nativeBuildInputs = [ @@ -45,6 +45,7 @@ buildPythonPackage rec { meta = with lib; { description = "Memory efficient Python objects"; homepage = "https://github.com/nucleic/atom"; + changelog = "https://github.com/nucleic/atom/releases/tag/${version}"; license = licenses.bsd3; maintainers = with maintainers; [ bhipple ]; }; diff --git a/pkgs/development/python-modules/auditwheel/default.nix b/pkgs/development/python-modules/auditwheel/default.nix index 836bbaf1cd0f5..9890a39e460c2 100644 --- a/pkgs/development/python-modules/auditwheel/default.nix +++ b/pkgs/development/python-modules/auditwheel/default.nix @@ -16,14 +16,14 @@ buildPythonPackage rec { pname = "auditwheel"; - version = "5.4.0"; + version = "6.0.0"; pyproject = true; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-qvgVOreinMmaZjziSYgE2vGIfqG3oyMboNP+5oo8zxk="; + hash = "sha256-ZCLEq2Qh0j41XJHplGkmzVMrn99G8rX/2vGr/p7inmc="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/authheaders/default.nix b/pkgs/development/python-modules/authheaders/default.nix index 7d4a4075439e9..6762e4b3ad7ac 100644 --- a/pkgs/development/python-modules/authheaders/default.nix +++ b/pkgs/development/python-modules/authheaders/default.nix @@ -5,15 +5,15 @@ , dnspython , fetchFromGitHub , publicsuffix2 -, pythonOlder , pytestCheckHook +, pythonOlder , setuptools }: buildPythonPackage rec { pname = "authheaders"; - version = "0.15.3"; - format = "setuptools"; + version = "0.16.2"; + pyproject = true; disabled = pythonOlder "3.7"; @@ -21,9 +21,13 @@ buildPythonPackage rec { owner = "ValiMail"; repo = "authentication-headers"; rev = "refs/tags/${version}"; - hash = "sha256-96fCx5uN7yegTrCN+LSjtu4u3RL+dcxV/Puyo0eziI8="; + hash = "sha256-/vxUUSWwysYQzcy2AmkF4f8R59FHRnBfFlPRpfM9e5o="; }; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ authres dnspython @@ -40,6 +44,11 @@ buildPythonPackage rec { "authheaders" ]; + disabledTests = [ + # Test fails with timeout even if the resolv.conf hack is present + "test_authenticate_dmarc_psdsub" + ]; + meta = with lib; { description = "Python library for the generation of email authentication headers"; homepage = "https://github.com/ValiMail/authentication-headers"; diff --git a/pkgs/development/python-modules/autofaiss/default.nix b/pkgs/development/python-modules/autofaiss/default.nix index 9f1bf2a6d8185..0f6ab7dda1598 100644 --- a/pkgs/development/python-modules/autofaiss/default.nix +++ b/pkgs/development/python-modules/autofaiss/default.nix @@ -14,7 +14,7 @@ buildPythonPackage rec { pname = "autofaiss"; - version = "2.16.0"; + version = "2.17.0"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -23,7 +23,7 @@ buildPythonPackage rec { owner = "criteo"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-NpehDx67VyIkcqno2DB2NmUKKZhK1Owwd9BNh3nqOLY="; + hash = "sha256-pey3wrW7CDLMiPPKnmYrcSJqGuy6ecA2SE9m3Jtt6DU="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/autopep8/default.nix b/pkgs/development/python-modules/autopep8/default.nix index 9a177d7b49366..4bfffd8a780b3 100644 --- a/pkgs/development/python-modules/autopep8/default.nix +++ b/pkgs/development/python-modules/autopep8/default.nix @@ -40,6 +40,7 @@ buildPythonPackage rec { description = "A tool that automatically formats Python code to conform to the PEP 8 style guide"; homepage = "https://github.com/hhatto/autopep8"; license = licenses.mit; + mainProgram = "autopep8"; maintainers = with maintainers; [ bjornfor ]; }; } diff --git a/pkgs/development/python-modules/awkward-cpp/default.nix b/pkgs/development/python-modules/awkward-cpp/default.nix index 3ccfc393a9888..18c0be822dea1 100644 --- a/pkgs/development/python-modules/awkward-cpp/default.nix +++ b/pkgs/development/python-modules/awkward-cpp/default.nix @@ -11,14 +11,14 @@ buildPythonPackage rec { pname = "awkward-cpp"; - version = "28"; + version = "29"; pyproject = true; disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; - hash = "sha256-ME67+QDFdzaP08SRpN3+aleQvex2orBr3MRygXYmRZI="; + hash = "sha256-r0t4kbeLkDFxvONB6I0q3YQFn6Fn8I6KmTAFmZ0bnRs="; }; nativeBuildInputs = [ @@ -41,6 +41,7 @@ buildPythonPackage rec { meta = with lib; { description = "CPU kernels and compiled extensions for Awkward Array"; homepage = "https://github.com/scikit-hep/awkward"; + changelog = "https://github.com/scikit-hep/awkward/releases/tag/v${version}"; license = licenses.bsd3; maintainers = with maintainers; [ veprbl ]; }; diff --git a/pkgs/development/python-modules/awkward/default.nix b/pkgs/development/python-modules/awkward/default.nix index fa31f3b5a4f73..0a5b78fc5cf67 100644 --- a/pkgs/development/python-modules/awkward/default.nix +++ b/pkgs/development/python-modules/awkward/default.nix @@ -24,7 +24,7 @@ buildPythonPackage rec { pname = "awkward"; - version = "2.5.2"; + version = "2.6.0"; pyproject = true; disabled = pythonOlder "3.8"; @@ -33,7 +33,7 @@ buildPythonPackage rec { owner = "scikit-hep"; repo = "awkward"; rev = "refs/tags/v${version}"; - hash = "sha256-n50REyU/aWx6rj+9TZ52S3sZS25/hIaNfOe+AQGaXVA="; + hash = "sha256-rSEGQqCbmB1IWm6gHjYEO1wiTUPlz1s/SwQ5BiI1YRc="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/aws-adfs/default.nix b/pkgs/development/python-modules/aws-adfs/default.nix index d583a97a41a01..2397b2462579b 100644 --- a/pkgs/development/python-modules/aws-adfs/default.nix +++ b/pkgs/development/python-modules/aws-adfs/default.nix @@ -19,7 +19,7 @@ buildPythonPackage rec { pname = "aws-adfs"; - version = "2.10.0"; + version = "2.11.2"; pyproject = true; disabled = pythonOlder "3.7"; @@ -28,7 +28,7 @@ buildPythonPackage rec { owner = "venth"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-CUWjD5b62pSvvMS5CFZix9GL4z0EhkGttxgfeOLKHqY="; + hash = "sha256-ZzQ92VBa8CApd0WkfPrUZsEZICK2fhwmt45P2sx2mK0="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/awscrt/default.nix b/pkgs/development/python-modules/awscrt/default.nix index dc499f2bcb6ca..31639cb455ffe 100644 --- a/pkgs/development/python-modules/awscrt/default.nix +++ b/pkgs/development/python-modules/awscrt/default.nix @@ -12,14 +12,14 @@ buildPythonPackage rec { pname = "awscrt"; - version = "0.19.19"; + version = "0.20.3"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-HBURU13uFGpsJqOC7T6tViWaEFs7fX2CNVOuVn0Djf4="; + hash = "sha256-xB5HHDSUKHYGosbCa4/pesx0uJQarp2aEhpHDBmDh1g="; }; buildInputs = lib.optionals stdenv.isDarwin [ diff --git a/pkgs/development/python-modules/awsipranges/default.nix b/pkgs/development/python-modules/awsipranges/default.nix new file mode 100644 index 0000000000000..036639c3cdb7b --- /dev/null +++ b/pkgs/development/python-modules/awsipranges/default.nix @@ -0,0 +1,51 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, poetry-core +, pyopenssl +, pytestCheckHook +, pythonOlder +}: + +buildPythonPackage rec { + pname = "awsipranges"; + version = "0.3.3"; + pyproject = true; + + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "aws-samples"; + repo = "awsipranges"; + rev = "refs/tags/${version}"; + hash = "sha256-ve1+0zkDDUGswtQoXhfESMcBzoNgUutxEhz43HXL4H8="; + }; + + nativeBuildInputs = [ + poetry-core + ]; + + nativeCheckInputs = [ + pyopenssl + pytestCheckHook + ]; + + pythonImportsCheck = [ + "awsipranges" + ]; + + disabledTestPaths = [ + # Tests require network access + "tests/data/test_syntax_and_semantics.py" + "tests/integration/test_package_apis.py" + "tests/unit/test_data_loading.py" + ]; + + meta = with lib; { + description = "Module to work with the AWS IP address ranges"; + homepage = "https://github.com/aws-samples/awsipranges"; + changelog = "https://github.com/aws-samples/awsipranges/releases/tag/${version}"; + license = licenses.asl20; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/awslambdaric/default.nix b/pkgs/development/python-modules/awslambdaric/default.nix index 3e20875ac15d5..788148d5e441f 100644 --- a/pkgs/development/python-modules/awslambdaric/default.nix +++ b/pkgs/development/python-modules/awslambdaric/default.nix @@ -5,7 +5,7 @@ , fetchpatch , isPy27 , pytestCheckHook -, autoconf +, autoconf271 , automake , cmake , gcc @@ -44,7 +44,7 @@ buildPythonPackage rec { propagatedBuildInputs = [ simplejson ]; - nativeBuildInputs = [ autoconf automake cmake libtool perl setuptools ]; + nativeBuildInputs = [ autoconf271 automake cmake libtool perl setuptools ]; buildInputs = [ gcc ]; diff --git a/pkgs/development/python-modules/awswrangler/default.nix b/pkgs/development/python-modules/awswrangler/default.nix index d3eee65f576a1..274b88a9811b7 100644 --- a/pkgs/development/python-modules/awswrangler/default.nix +++ b/pkgs/development/python-modules/awswrangler/default.nix @@ -25,7 +25,7 @@ buildPythonPackage rec { pname = "awswrangler"; - version = "3.5.1"; + version = "3.5.2"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -34,7 +34,7 @@ buildPythonPackage rec { owner = "aws"; repo = "aws-sdk-pandas"; rev = "refs/tags/${version}"; - hash = "sha256-USHRs/NRCPACvVxsQyRF1yQsQefAXSTwdHJqQqKe6bQ="; + hash = "sha256-lIEitS/pyOq4RjyUqPzfKOcNtAIWp14sQcLfQ1FwEoE="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/azure-batch/default.nix b/pkgs/development/python-modules/azure-batch/default.nix index 2ca6a6d743ca5..041d79b5ebd0d 100644 --- a/pkgs/development/python-modules/azure-batch/default.nix +++ b/pkgs/development/python-modules/azure-batch/default.nix @@ -1,29 +1,31 @@ { lib , buildPythonPackage , fetchPypi -, msrest -, azure-common , msrestazure +, azure-common , pythonOlder +, setuptools }: buildPythonPackage rec { pname = "azure-batch"; - version = "14.0.0"; - format = "setuptools"; + version = "14.1.0"; + pyproject = true; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - extension = "zip"; - hash = "sha256-FlsembhvghAkxProX7NIadQHqg67DKS5b7JthZwmyTQ="; + hash = "sha256-lhayyqYpx0ABItaF1VfrzQF5famImQgxj5pUdIQ5es0="; }; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ - msrest - msrestazure azure-common + msrestazure ]; # Module has no tests @@ -35,7 +37,8 @@ buildPythonPackage rec { meta = with lib; { description = "This is the Microsoft Azure Batch Client Library"; - homepage = "https://github.com/Azure/azure-sdk-for-python"; + homepage = "https://github.com/Azure/azure-sdk-for-python/tree/main/sdk/batch/azure-batch"; + changelog = "https://github.com/Azure/azure-sdk-for-python/blob/azure-batch_${version}/sdk/batch/azure-batch/CHANGELOG.md"; license = licenses.mit; maintainers = with maintainers; [ maxwilson ]; }; diff --git a/pkgs/development/python-modules/azure-common/default.nix b/pkgs/development/python-modules/azure-common/default.nix index ed4cd5243abf0..2b4caa102f79c 100644 --- a/pkgs/development/python-modules/azure-common/default.nix +++ b/pkgs/development/python-modules/azure-common/default.nix @@ -25,7 +25,7 @@ buildPythonPackage rec { ] ++ lib.optionals (!isPy3k) [ setuptools ]; # need for namespace lookup postInstall = lib.optionalString (!isPy3k) '' - echo "__import__('pkg_resources').declare_namespace(__name__)" >> "$out/lib/${python.libPrefix}"/site-packages/azure/__init__.py + echo "__import__('pkg_resources').declare_namespace(__name__)" >> "$out/${python.sitePackages}"/azure/__init__.py ''; doCheck = false; diff --git a/pkgs/development/python-modules/azure-data-tables/default.nix b/pkgs/development/python-modules/azure-data-tables/default.nix index 783a792513be5..42b8b1edb55d0 100644 --- a/pkgs/development/python-modules/azure-data-tables/default.nix +++ b/pkgs/development/python-modules/azure-data-tables/default.nix @@ -10,14 +10,14 @@ buildPythonPackage rec { pname = "azure-data-tables"; - version = "12.4.4"; + version = "12.5.0"; format = "setuptools"; - disabled = pythonOlder "3.7"; + disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; - hash = "sha256-HWjIQBWYmU43pSxKLcwx45EExn10jeEkyY9Hpbyn0vw="; + hash = "sha256-7qOTpjgMQusD6AeCXAN4MgA9CcgjKUgx2hXoEVWgtOY="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/azure-mgmt-common/default.nix b/pkgs/development/python-modules/azure-mgmt-common/default.nix index 7ce7ce2c3f007..5f0390708c7d9 100644 --- a/pkgs/development/python-modules/azure-mgmt-common/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-common/default.nix @@ -28,8 +28,8 @@ buildPythonPackage rec { ]; postInstall = pkgs.lib.optionalString (!isPy3k) '' - echo "__import__('pkg_resources').declare_namespace(__name__)" >> "$out/lib/${python.libPrefix}"/site-packages/azure/mgmt/__init__.py - echo "__import__('pkg_resources').declare_namespace(__name__)" >> "$out/lib/${python.libPrefix}"/site-packages/azure/__init__.py + echo "__import__('pkg_resources').declare_namespace(__name__)" >> "$out/${python.sitePackages}"/azure/mgmt/__init__.py + echo "__import__('pkg_resources').declare_namespace(__name__)" >> "$out/${python.sitePackages}"/azure/__init__.py ''; doCheck = false; diff --git a/pkgs/development/python-modules/azure-mgmt-compute/default.nix b/pkgs/development/python-modules/azure-mgmt-compute/default.nix index eb95a00de2a0b..7c6c6b7ff7da7 100644 --- a/pkgs/development/python-modules/azure-mgmt-compute/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-compute/default.nix @@ -10,14 +10,14 @@ buildPythonPackage rec { pname = "azure-mgmt-compute"; - version = "30.4.0"; + version = "30.5.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-C3Qo/YvRXHy9fGa5uwEOClyzeoBs7x9JSNkHGRV2kzQ="; + hash = "sha256-7T6jS3mdsNUu5V4vGrSw8J+koI814GHsuarZ+1ohiEQ="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/azure-mgmt-containerservice/default.nix b/pkgs/development/python-modules/azure-mgmt-containerservice/default.nix index c72c54ffbdced..ddb4b6987fac3 100644 --- a/pkgs/development/python-modules/azure-mgmt-containerservice/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-containerservice/default.nix @@ -11,14 +11,14 @@ buildPythonPackage rec { pname = "azure-mgmt-containerservice"; - version = "28.0.0"; + version = "29.0.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-tVYFpEUV9v0OOk3CK/oPRA8+fhYl668Gqz6wa/NabNs="; + hash = "sha256-0BiuK5JCj6rqfSYD8+GWca2k5SQ19MXEHR3TQcYzgoA="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/azure-mgmt-datafactory/default.nix b/pkgs/development/python-modules/azure-mgmt-datafactory/default.nix index 3de8b1c16fab2..ee4b29c28a8e7 100644 --- a/pkgs/development/python-modules/azure-mgmt-datafactory/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-datafactory/default.nix @@ -9,14 +9,14 @@ buildPythonPackage rec { pname = "azure-mgmt-datafactory"; - version = "4.0.0"; + version = "5.0.0"; format = "setuptools"; disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; - hash = "sha256-XfTLbVdoPVLKgVlBDr59N0EKe+G9fAS+SjI9cWhhs4g="; + hash = "sha256-WX/lFsU8qGg3Mg5bk+U0SBdR6cQpjtfmbX02Hr8uz7o="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/azure-mgmt-recoveryservicesbackup/default.nix b/pkgs/development/python-modules/azure-mgmt-recoveryservicesbackup/default.nix index a9c9da857478c..7f8ab5b19a487 100644 --- a/pkgs/development/python-modules/azure-mgmt-recoveryservicesbackup/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-recoveryservicesbackup/default.nix @@ -9,14 +9,14 @@ buildPythonPackage rec { pname = "azure-mgmt-recoveryservicesbackup"; - version = "7.0.0"; + version = "9.0.0"; format = "setuptools"; disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; - hash = "sha256-GuW6x8JGdBedywum4fDAQ8rwbVU9UgQWgHrFqJ6Uz9A="; + hash = "sha256-H/SsO/DnHXSsSyejYX7BFem1GqPh20DRGecrYVkIu1E="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/azure-mgmt-security/default.nix b/pkgs/development/python-modules/azure-mgmt-security/default.nix index b760acc8c8a62..60271f7c03819 100644 --- a/pkgs/development/python-modules/azure-mgmt-security/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-security/default.nix @@ -1,34 +1,33 @@ { lib -, buildPythonPackage -, fetchPypi , azure-common , azure-mgmt-core -, msrest -, msrestazure +, buildPythonPackage +, fetchPypi +, isodate , pythonOlder -, typing-extensions +, setuptools }: buildPythonPackage rec { pname = "azure-mgmt-security"; - version = "5.0.0"; - format = "setuptools"; + version = "6.0.0"; + fpyproject = true; - disabled = pythonOlder "3.7"; + disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; - hash = "sha256-OLA+/oLCNEzqID/alebQC3rCJ4L6HAtYXNDqLI/z5wI="; - extension = "zip"; + hash = "sha256-zq/BhpiZBnEQvYMMXMmLybjzLY6oQMofaTsaX1Kl+LA="; }; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ azure-common azure-mgmt-core - msrest - msrestazure - ] ++ lib.optionals (pythonOlder "3.8") [ - typing-extensions + isodate ]; # no tests included @@ -42,6 +41,7 @@ buildPythonPackage rec { meta = with lib; { description = "Microsoft Azure Security Center Management Client Library for Python"; homepage = "https://github.com/Azure/azure-sdk-for-python"; + changelog = "https://github.com/Azure/azure-sdk-for-python/blob/azure-mgmt-security_${version}/sdk/security/azure-mgmt-security/CHANGELOG.md"; license = licenses.mit; maintainers = with maintainers; [ jonringer ]; }; diff --git a/pkgs/development/python-modules/b2sdk/default.nix b/pkgs/development/python-modules/b2sdk/default.nix index 2e13666af1406..0ff6214bf5b58 100644 --- a/pkgs/development/python-modules/b2sdk/default.nix +++ b/pkgs/development/python-modules/b2sdk/default.nix @@ -19,14 +19,14 @@ buildPythonPackage rec { pname = "b2sdk"; - version = "1.29.0"; + version = "1.29.1"; pyproject = true; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-h/pXLGpQ2+ENxWqIb9yteroaudsS8Hz+sraON+65TMw="; + hash = "sha256-Talw1P0JnPdU+dDgC8J2TJSOV/LshgQyBbPYEqzKpfA="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/backports-zoneinfo/default.nix b/pkgs/development/python-modules/backports-zoneinfo/default.nix index ed0915eee5220..ff5196855d343 100644 --- a/pkgs/development/python-modules/backports-zoneinfo/default.nix +++ b/pkgs/development/python-modules/backports-zoneinfo/default.nix @@ -46,7 +46,7 @@ buildPythonPackage rec { (substituteAll { name = "zoneinfo-path"; src = ./zoneinfo.patch; - zoneinfo = "${tzdata}/lib/${python.libPrefix}/site-packages/tzdata/zoneinfo"; + zoneinfo = "${tzdata}/${python.sitePackages}/tzdata/zoneinfo"; }) ]; diff --git a/pkgs/development/python-modules/bandit/default.nix b/pkgs/development/python-modules/bandit/default.nix index 7d7464ec74da4..f2f30079954d3 100644 --- a/pkgs/development/python-modules/bandit/default.nix +++ b/pkgs/development/python-modules/bandit/default.nix @@ -12,14 +12,14 @@ buildPythonPackage rec { pname = "bandit"; - version = "1.7.6"; + version = "1.7.7"; format = "setuptools"; disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; - hash = "sha256-cs57yXQTdNlvsvHJqJYIKYhfEkP/3nQ95woZzuNT6PM="; + hash = "sha256-UnkGvsYIjLSZquMbyWKGS053Vp6dUp7lHfOpO0uKsoo="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/base2048/default.nix b/pkgs/development/python-modules/base2048/default.nix index 889ef9f81f172..8d75bd93e336a 100644 --- a/pkgs/development/python-modules/base2048/default.nix +++ b/pkgs/development/python-modules/base2048/default.nix @@ -1,8 +1,10 @@ { lib +, stdenv , buildPythonPackage , cargo , fetchFromGitHub , frelatage +, libiconv , maturin , pytestCheckHook , pythonOlder @@ -39,6 +41,10 @@ buildPythonPackage rec { rustc ]; + buildInputs = lib.optionals stdenv.isDarwin [ + libiconv + ]; + passthru.optional-dependencies = { fuzz = [ frelatage diff --git a/pkgs/development/python-modules/betterproto/default.nix b/pkgs/development/python-modules/betterproto/default.nix index f17fabec994f3..f5cc7d9253eae 100644 --- a/pkgs/development/python-modules/betterproto/default.nix +++ b/pkgs/development/python-modules/betterproto/default.nix @@ -13,6 +13,7 @@ , pytestCheckHook , pytest-asyncio , pytest-mock +, typing-extensions , tomlkit , grpcio-tools }: @@ -20,21 +21,25 @@ buildPythonPackage rec { pname = "betterproto"; version = "2.0.0b6"; - format = "pyproject"; - disabled = pythonOlder "3.7"; + pyproject = true; + + disabled = pythonOlder "3.9"; src = fetchFromGitHub { owner = "danielgtaylor"; repo = "python-betterproto"; - rev = "v.${version}"; + rev = "refs/tags/v.${version}"; hash = "sha256-ZuVq4WERXsRFUPNNTNp/eisWX1MyI7UtwqEI8X93wYI="; }; - nativeBuildInputs = [ poetry-core ]; + nativeBuildInputs = [ + poetry-core + ]; propagatedBuildInputs = [ grpclib python-dateutil + typing-extensions ]; passthru.optional-dependencies.compiler = [ @@ -43,16 +48,18 @@ buildPythonPackage rec { isort ]; - pythonImportsCheck = [ "betterproto" ]; - nativeCheckInputs = [ + grpcio-tools pydantic - pytestCheckHook pytest-asyncio pytest-mock + pytestCheckHook tomlkit - grpcio-tools - ] ++ passthru.optional-dependencies.compiler; + ] ++ lib.flatten (builtins.attrValues passthru.optional-dependencies); + + pythonImportsCheck = [ + "betterproto" + ]; # The tests require the generation of code before execution. This requires # the protoc-gen-python_betterproto script from the package to be on PATH. @@ -62,14 +69,24 @@ buildPythonPackage rec { ${python.interpreter} -m tests.generate ''; + disabledTestPaths = [ + # https://github.com/danielgtaylor/python-betterproto/issues/530 + "tests/inputs/oneof/test_oneof.py" + ]; + + disabledTests = [ + "test_pydantic_no_value" + ]; + meta = with lib; { - description = "Clean, modern, Python 3.6+ code generator & library for Protobuf 3 and async gRPC"; + description = "Code generator & library for Protobuf 3 and async gRPC"; longDescription = '' This project aims to provide an improved experience when using Protobuf / gRPC in a modern Python environment by making use of modern language features and generating readable, understandable, idiomatic Python code. ''; homepage = "https://github.com/danielgtaylor/python-betterproto"; + changelog = "https://github.com/danielgtaylor/python-betterproto/blob/v.${version}/CHANGELOG.md"; license = licenses.mit; maintainers = with maintainers; [ nikstur ]; }; diff --git a/pkgs/development/python-modules/biopython/default.nix b/pkgs/development/python-modules/biopython/default.nix index cb27d3231d4f3..2ec814f56aef0 100644 --- a/pkgs/development/python-modules/biopython/default.nix +++ b/pkgs/development/python-modules/biopython/default.nix @@ -1,25 +1,43 @@ { lib , buildPythonPackage , fetchPypi +, pythonOlder +, setuptools , numpy -, isPy3k }: buildPythonPackage rec { pname = "biopython"; - version = "1.82"; - format = "setuptools"; + version = "1.83"; + pyproject = true; + + disabled = pythonOlder "3.9"; src = fetchPypi { inherit pname version; - hash = "sha256-qbENlZroipdEqRxs42AfTIbn7EFnm8k8KfZ5IY9hZ7s="; + hash = "sha256-eOa/t43mMDQDev01/nfLbgqeW2Jwa+z3in2SKxbtg/c="; }; - disabled = !isPy3k; + nativeBuildInputs = [ + setuptools + ]; propagatedBuildInputs = [ numpy ]; - # Checks try to write to $HOME, which does not work with nix - doCheck = false; + + pythonImportsCheck = [ + "Bio" + ]; + + checkPhase = '' + runHook preCheck + + export HOME=$(mktemp -d) + cd Tests + python run_tests.py --offline + + runHook postCheck + ''; + meta = { description = "Python library for bioinformatics"; longDescription = '' diff --git a/pkgs/development/python-modules/bip-utils/default.nix b/pkgs/development/python-modules/bip-utils/default.nix index 505c19cf19436..5666f7c1353a0 100644 --- a/pkgs/development/python-modules/bip-utils/default.nix +++ b/pkgs/development/python-modules/bip-utils/default.nix @@ -15,7 +15,7 @@ buildPythonPackage rec { pname = "bip-utils"; - version = "2.9.0"; + version = "2.9.1"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -24,7 +24,7 @@ buildPythonPackage rec { owner = "ebellocchia"; repo = "bip_utils"; rev = "refs/tags/v${version}"; - hash = "sha256-PUWKpAn6Z1E7uMk8+XFm6FDtupzj6eMSkyXR9vN1w3I="; + hash = "sha256-D+LalbrwsjxwYW8l38D1l4tGAsjrZ+bS+/Ppgaxkzy4="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/birch/default.nix b/pkgs/development/python-modules/birch/default.nix index 3afd6d3df06a9..1dd4848427e52 100644 --- a/pkgs/development/python-modules/birch/default.nix +++ b/pkgs/development/python-modules/birch/default.nix @@ -1,6 +1,7 @@ { lib , buildPythonPackage , fetchFromGitHub +, fetchpatch , setuptools , strct , pytestCheckHook @@ -19,11 +20,24 @@ buildPythonPackage rec { hash = "sha256-KdQZzQJvJ+logpcLQfaqqEEZJ/9VmNTQX/a4v0oBC98="; }; + patches = [ + # https://github.com/shaypal5/birch/pull/4 + (fetchpatch { + name = "fix-versioneer-on-python312.patch"; + url = "https://github.com/shaypal5/birch/commit/84d597b2251ebb76fb15fb70fc86c83baa19dc0b.patch"; + hash = "sha256-xXADCSIhq1ARny2twzrhR1J8LkMFWFl6tmGxrM8RvkU="; + }) + ]; + postPatch = '' substituteInPlace pytest.ini \ --replace \ "--cov" \ "#--cov" + + # configure correct version, which fails due to missing .git + substituteInPlace versioneer.py birch/_version.py \ + --replace '"0+unknown"' '"${version}"' ''; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/blebox-uniapi/default.nix b/pkgs/development/python-modules/blebox-uniapi/default.nix index f93ef838751f5..7436f63091527 100644 --- a/pkgs/development/python-modules/blebox-uniapi/default.nix +++ b/pkgs/development/python-modules/blebox-uniapi/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "blebox-uniapi"; - version = "2.2.0"; + version = "2.2.1"; format = "setuptools"; disabled = pythonOlder "3.9"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "blebox"; repo = "blebox_uniapi"; rev = "refs/tags/v${version}"; - hash = "sha256-cLSI6wa3gHE0QkSVVWMNpb5fyQy0TLDNSqOuGlDJGJc="; + hash = "sha256-aVYk/N8dH0jc9BLQ2nZXulMCUqwEWpSX/JTiAxdn2sM="; }; postPatch = '' diff --git a/pkgs/development/python-modules/blinkpy/default.nix b/pkgs/development/python-modules/blinkpy/default.nix index 37b01b3860551..f245b50d13433 100644 --- a/pkgs/development/python-modules/blinkpy/default.nix +++ b/pkgs/development/python-modules/blinkpy/default.nix @@ -14,7 +14,7 @@ buildPythonPackage rec { pname = "blinkpy"; - version = "0.22.5"; + version = "0.22.6"; pyproject = true; disabled = pythonOlder "3.9"; @@ -23,7 +23,7 @@ buildPythonPackage rec { owner = "fronzbot"; repo = "blinkpy"; rev = "refs/tags/v${version}"; - hash = "sha256-u6FurFaAbkBOT2F+nTL/rGNdUhOpLq+nVKPF3ohuXEs="; + hash = "sha256-46REi+3dUY9dJrhXgKkQ1OfN6XCy1fV9cW6wk82ClOA="; }; postPatch = '' diff --git a/pkgs/development/python-modules/blocksat-cli/default.nix b/pkgs/development/python-modules/blocksat-cli/default.nix index ac53b567e5a99..18437efceb4ba 100644 --- a/pkgs/development/python-modules/blocksat-cli/default.nix +++ b/pkgs/development/python-modules/blocksat-cli/default.nix @@ -1,53 +1,50 @@ { lib , buildPythonPackage -, fetchPypi , distro +, fetchFromGitHub +, pyasyncore , pysnmp +, pytestCheckHook , python-gnupg +, pythonAtLeast +, pythonOlder , qrcode , requests -, sseclient-py -, zfec -, pytestCheckHook -, pythonOlder +, setuptools }: buildPythonPackage rec { pname = "blocksat-cli"; - version = "0.4.6"; - format = "setuptools"; + version = "2.4.6"; + pyproject = true; - disabled = pythonOlder "3.7"; + disabled = pythonOlder "3.8"; - src = fetchPypi { - inherit pname version; - hash = "sha256-uANAMNoAC4HUoUuR5ldxoiy+LLzZVpKosU5JttXLnqg="; + src = fetchFromGitHub { + owner = "Blockstream"; + repo = "satellite"; + rev = "refs/tags/v${version}"; + hash = "sha256-1gz2lAS/AHeY54AaVXGeofLC68KjAP7POsIaBL3v2EY="; }; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ distro pysnmp python-gnupg qrcode requests - sseclient-py - zfec + ] ++ lib.optionals (pythonAtLeast "3.12") [ + pyasyncore ]; nativeCheckInputs = [ pytestCheckHook ]; - disabledTestPaths = [ - # disable tests which require being connected to the satellite - "blocksatcli/test_satip.py" - "blocksatcli/api/test_listen.py" - "blocksatcli/api/test_msg.py" - "blocksatcli/api/test_net.py" - # disable tests which require being online - "blocksatcli/api/test_order.py" - ]; - disabledTests = [ "test_monitor_get_stats" "test_monitor_update_with_reporting_enabled" @@ -61,6 +58,7 @@ buildPythonPackage rec { meta = with lib; { description = "Blockstream Satellite CLI"; homepage = "https://github.com/Blockstream/satellite"; + changelog = "https://github.com/Blockstream/satellite/releases/tag/v${version}"; license = licenses.gpl3Only; maintainers = with maintainers; [ prusnak ]; }; diff --git a/pkgs/development/python-modules/bluetooth-adapters/default.nix b/pkgs/development/python-modules/bluetooth-adapters/default.nix index 4458815e03ae7..765f4340ceb93 100644 --- a/pkgs/development/python-modules/bluetooth-adapters/default.nix +++ b/pkgs/development/python-modules/bluetooth-adapters/default.nix @@ -17,16 +17,16 @@ buildPythonPackage rec { pname = "bluetooth-adapters"; - version = "0.16.2"; - format = "pyproject"; + version = "0.17.0"; + pyproject = true; disabled = pythonOlder "3.9"; src = fetchFromGitHub { owner = "Bluetooth-Devices"; - repo = pname; + repo = "bluetooth-adapters"; rev = "refs/tags/v${version}"; - hash = "sha256-2Z+COsWsIezcslCN50oZRTquAXsmxxp7fAjyGScoRq8="; + hash = "sha256-7j55+bCScoqtYJ/1lmqsPk3j+dbs+VfPTzTiwdVg0Pw="; }; postPatch = '' diff --git a/pkgs/development/python-modules/bluetooth-auto-recovery/default.nix b/pkgs/development/python-modules/bluetooth-auto-recovery/default.nix index b9cd8bec9f08c..2a39c28d0fdb4 100644 --- a/pkgs/development/python-modules/bluetooth-auto-recovery/default.nix +++ b/pkgs/development/python-modules/bluetooth-auto-recovery/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "bluetooth-auto-recovery"; - version = "1.2.3"; + version = "1.3.0"; format = "pyproject"; disabled = pythonOlder "3.9"; @@ -22,7 +22,7 @@ buildPythonPackage rec { owner = "Bluetooth-Devices"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-1ytiTIAV00Wk2zqZKRAsstVLuyzPEGBISz0g0ssC5Eo="; + hash = "sha256-4DFi7UrEQgU7dckUuGxj/sWyystx8NYb6xK4hyurKKo="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/blurhash-python/default.nix b/pkgs/development/python-modules/blurhash-python/default.nix new file mode 100644 index 0000000000000..2b0232a7e9b91 --- /dev/null +++ b/pkgs/development/python-modules/blurhash-python/default.nix @@ -0,0 +1,50 @@ +{ lib +, buildPythonPackage +, pythonOlder +, fetchFromGitHub +, cffi +, pillow +, pytestCheckHook +, setuptools-scm +, six +}: + +buildPythonPackage rec { + pname = "blurhash-python"; + version = "1.2.2"; + + disabled = pythonOlder "3.8"; + + pyproject = true; + + src = fetchFromGitHub { + owner = "woltapp"; + repo = "blurhash-python"; + rev = "v${version}"; + hash = "sha256-Cz+PkPp1knvT3U5ofyb1PstM9kzBOkgPbx03LgOLXgw="; + }; + + nativeBuildInputs = [ + cffi + setuptools-scm + ]; + + propagatedBuildInputs = [ + cffi + pillow + six + ]; + + pythonImportsCheck = [ "blurhash" ]; + + nativeCheckInputs = [ + pytestCheckHook + ]; + + meta = { + description = "Compact representation of a placeholder for an image"; + homepage = "https://github.com/woltapp/blurhash-python"; + license = lib.licenses.mit; + maintainers = with lib.maintainers; [ dotlambda ]; + }; +} diff --git a/pkgs/development/python-modules/bokeh/default.nix b/pkgs/development/python-modules/bokeh/default.nix index a697a15c54b93..91760ed463a76 100644 --- a/pkgs/development/python-modules/bokeh/default.nix +++ b/pkgs/development/python-modules/bokeh/default.nix @@ -48,14 +48,14 @@ buildPythonPackage rec { pname = "bokeh"; # update together with panel which is not straightforward - version = "3.3.2"; + version = "3.3.3"; format = "pyproject"; disabled = pythonOlder "3.9"; src = fetchPypi { inherit pname version; - hash = "sha256-rhgPhvd2Ul9+uBZzofJ+DrVoh9czdxZixRLsDYKkM/U="; + hash = "sha256-bs5vACY/LSBDok6vnbdab4YO/Ioflt9mMYb+PrJpLdM="; }; src_test = fetchFromGitHub { diff --git a/pkgs/development/python-modules/boltztrap2/default.nix b/pkgs/development/python-modules/boltztrap2/default.nix index b8b4932583543..6f5155643432e 100644 --- a/pkgs/development/python-modules/boltztrap2/default.nix +++ b/pkgs/development/python-modules/boltztrap2/default.nix @@ -15,7 +15,7 @@ buildPythonPackage rec { pname = "boltztrap2"; - version = "22.12.1"; + version = "24.1.1"; format = "setuptools"; disabled = pythonOlder "3.5"; @@ -23,7 +23,7 @@ buildPythonPackage rec { src = fetchPypi { pname = "BoltzTraP2"; inherit version; - hash = "sha256-gzjWAMUJcF5AyDS1Qx7opVbYewaqGgmFMDGWCh/2Wz4="; + hash = "sha256-kgv4lPBxcBmRKihaTwPRz8bHTWAWUOGZADtJUb3y+C4="; }; dontUseCmakeConfigure = true; diff --git a/pkgs/development/python-modules/borb/default.nix b/pkgs/development/python-modules/borb/default.nix index 2c8c84bbf20ce..2c20e8ff7fb70 100644 --- a/pkgs/development/python-modules/borb/default.nix +++ b/pkgs/development/python-modules/borb/default.nix @@ -14,14 +14,14 @@ buildPythonPackage rec { pname = "borb"; - version = "2.1.20"; + version = "2.1.21"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - hash = "sha256-HvPwFtqAPtJrG+O+t8OyQmYHVo6DC7StAjSfAxtuFe4="; + hash = "sha256-gnsPsvchvcUlWwmhDIazuc8/83ZRKc29VKhIDFSoFlE="; }; propagatedBuildInputs = [ @@ -44,6 +44,7 @@ buildPythonPackage rec { meta = with lib; { description = "Library for reading, creating and manipulating PDF files in Python"; homepage = "https://borbpdf.com/"; + changelog = "https://github.com/jorisschellekens/borb/releases/tag/v${version}"; license = licenses.agpl3Only; maintainers = with maintainers; [ marsam ]; }; diff --git a/pkgs/development/python-modules/boto3-stubs/default.nix b/pkgs/development/python-modules/boto3-stubs/default.nix index bcb053f2f9a37..7e0585b8f6f86 100644 --- a/pkgs/development/python-modules/boto3-stubs/default.nix +++ b/pkgs/development/python-modules/boto3-stubs/default.nix @@ -365,14 +365,14 @@ buildPythonPackage rec { pname = "boto3-stubs"; - version = "1.34.18"; + version = "1.34.34"; pyproject = true; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-6U+2eed5mRbhWekT9J3VyCRw3x0eVmx7Uj9wPi7VzsE="; + hash = "sha256-lnidW9vZ7hDcplEsdwegfPUu97Guq3kqlCx9axMX09w="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/botocore-stubs/default.nix b/pkgs/development/python-modules/botocore-stubs/default.nix index 12040442c8ea3..d19a49f7a34d8 100644 --- a/pkgs/development/python-modules/botocore-stubs/default.nix +++ b/pkgs/development/python-modules/botocore-stubs/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "botocore-stubs"; - version = "1.34.18"; + version = "1.34.34"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -17,7 +17,7 @@ buildPythonPackage rec { src = fetchPypi { pname = "botocore_stubs"; inherit version; - hash = "sha256-xa+muzfKidf72yEJE5AxSFZqDyxg2a6hJW3adnIPF3E="; + hash = "sha256-NPTURvnu2SvuYqD8MDtxLREqhKo1bj3M6ihjrHnZ7xQ="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/botorch/default.nix b/pkgs/development/python-modules/botorch/default.nix index c62fef2478aec..d4503c85c9883 100644 --- a/pkgs/development/python-modules/botorch/default.nix +++ b/pkgs/development/python-modules/botorch/default.nix @@ -11,6 +11,7 @@ , torch , scipy , pytestCheckHook +, pythonRelaxDepsHook }: buildPythonPackage rec { @@ -26,6 +27,7 @@ buildPythonPackage rec { }; nativeBuildInputs = [ + pythonRelaxDepsHook setuptools setuptools-scm wheel @@ -40,6 +42,10 @@ buildPythonPackage rec { torch ]; + pythonRelaxDeps = [ + "linear-operator" + ]; + checkInputs = [ pytestCheckHook ]; diff --git a/pkgs/development/python-modules/boxx/default.nix b/pkgs/development/python-modules/boxx/default.nix index 7dd580c345a7c..a42cc2c0ee55e 100644 --- a/pkgs/development/python-modules/boxx/default.nix +++ b/pkgs/development/python-modules/boxx/default.nix @@ -19,14 +19,14 @@ buildPythonPackage rec { pname = "boxx"; - version = "0.10.12"; + version = "0.10.13"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-pumkDVyotm8bJEl/rrpNSsP8KZIVIgThGFB/Sy4OdUs="; + hash = "sha256-Z1mmNTGjK77GNdlYAXQzp+9Z7TeiKZGvio4SXGwgOPk="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/branca/default.nix b/pkgs/development/python-modules/branca/default.nix index 3bd46a26b83bb..894ee421d2084 100644 --- a/pkgs/development/python-modules/branca/default.nix +++ b/pkgs/development/python-modules/branca/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "branca"; - version = "0.7.0"; + version = "0.7.1"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -19,7 +19,7 @@ buildPythonPackage rec { owner = "python-visualization"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-DH+XBj+VcS56+nAOGjjrKG0dnSKrqiU6N5vkILm+vSE="; + hash = "sha256-OePOZvqXtsp73HsfFslI6F3kegbdk45lWY1CMQRTcoc="; }; postPatch = '' diff --git a/pkgs/development/python-modules/breezy/Cargo.lock b/pkgs/development/python-modules/breezy/Cargo.lock index 6b14574977001..0c70fa49f4ee1 100644 --- a/pkgs/development/python-modules/breezy/Cargo.lock +++ b/pkgs/development/python-modules/breezy/Cargo.lock @@ -4,9 +4,9 @@ version = 3 [[package]] name = "aho-corasick" -version = "1.0.5" +version = "1.1.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0c378d78423fdad8089616f827526ee33c19f2fddbd5de1629152c9593ba4783" +checksum = "b2969dcb958b36655471fc61f7e416fa76033bdd4bfed0678d8fee1e2d07a1f0" dependencies = [ "memchr", ] @@ -25,7 +25,7 @@ checksum = "bef38d45163c2f1dde094a7dfd33ccf595c92905c8f8f4fdc18d06fb1037718a" [[package]] name = "breezy" -version = "3.3.4" +version = "3.3.5" dependencies = [ "pyo3", ] @@ -37,10 +37,16 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "baf1de4339761588bc0619e3cbc0120ee582ebb74b53b4efbf79117bd2da40fd" [[package]] +name = "heck" +version = "0.4.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "95505c38b4572b2d910cecb0281560f54b440a19336cbbcb27bf6ce6adc6f5a8" + +[[package]] name = "indoc" -version = "1.0.9" +version = "2.0.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "bfa799dd5ed20a7e349f3b4639aa80d74549c81716d9ec4f994c9b5815598306" +checksum = "1e186cfbae8084e513daff4240b4797e342f988cecda4fb6c939150f96315fd8" [[package]] name = "lazy_static" @@ -50,15 +56,15 @@ checksum = "e2abad23fbc42b3700f2f279844dc832adb2b2eb069b2df918f455c4e18cc646" [[package]] name = "libc" -version = "0.2.147" +version = "0.2.152" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b4668fb0ea861c1df094127ac5f1da3409a82116a4ba74fca2e58ef927159bb3" +checksum = "13e3bf6590cbc649f4d1a3eefc9d5d6eb746f5200ffb04e5e142700b8faa56e7" [[package]] name = "lock_api" -version = "0.4.10" +version = "0.4.11" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c1cc9717a20b1bb222f333e6a92fd32f7d8a18ddc5a3191a11af45dcbf4dcd16" +checksum = "3c168f8615b12bc01f9c17e2eb0cc07dcae1940121185446edc3744920e8ef45" dependencies = [ "autocfg", "scopeguard", @@ -66,9 +72,9 @@ dependencies = [ [[package]] name = "memchr" -version = "2.6.3" +version = "2.7.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8f232d6ef707e1956a43342693d2a31e72989554d58299d7a88738cc95b0d35c" +checksum = "523dc4f511e55ab87b694dc30d0f820d60906ef06413f93d4d7a1385599cc149" [[package]] name = "memoffset" @@ -81,9 +87,9 @@ dependencies = [ [[package]] name = "once_cell" -version = "1.18.0" +version = "1.19.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "dd8b5dd2ae5ed71462c540258bedcb51965123ad7e7ccf4b9a8cafaa4a63576d" +checksum = "3fdb12b2476b595f9358c5161aa467c2438859caa136dec86c26fdd2efe17b92" [[package]] name = "parking_lot" @@ -97,9 +103,9 @@ dependencies = [ [[package]] name = "parking_lot_core" -version = "0.9.8" +version = "0.9.9" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "93f00c865fe7cabf650081affecd3871070f26767e7b2070a3ffae14c654b447" +checksum = "4c42a9226546d68acdd9c0a280d17ce19bfe27a46bf68784e4066115788d008e" dependencies = [ "cfg-if", "libc", @@ -110,18 +116,18 @@ dependencies = [ [[package]] name = "proc-macro2" -version = "1.0.66" +version = "1.0.78" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "18fb31db3f9bddb2ea821cde30a9f70117e3f119938b5ee630b7403aa6e2ead9" +checksum = "e2422ad645d89c99f8f3e6b88a9fdeca7fabeac836b1002371c4367c8f984aae" dependencies = [ "unicode-ident", ] [[package]] name = "pyo3" -version = "0.19.2" +version = "0.20.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e681a6cfdc4adcc93b4d3cf993749a4552018ee0a9b65fc0ccfad74352c72a38" +checksum = "9a89dc7a5850d0e983be1ec2a463a171d20990487c3cfcd68b5363f1ee3d6fe0" dependencies = [ "cfg-if", "indoc", @@ -136,9 +142,9 @@ dependencies = [ [[package]] name = "pyo3-build-config" -version = "0.19.2" +version = "0.20.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "076c73d0bc438f7a4ef6fdd0c3bb4732149136abd952b110ac93e4edb13a6ba5" +checksum = "07426f0d8fe5a601f26293f300afd1a7b1ed5e78b2a705870c5f30893c5163be" dependencies = [ "once_cell", "target-lexicon", @@ -146,9 +152,9 @@ dependencies = [ [[package]] name = "pyo3-ffi" -version = "0.19.2" +version = "0.20.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e53cee42e77ebe256066ba8aa77eff722b3bb91f3419177cf4cd0f304d3284d9" +checksum = "dbb7dec17e17766b46bca4f1a4215a85006b4c2ecde122076c562dd058da6cf1" dependencies = [ "libc", "pyo3-build-config", @@ -156,9 +162,9 @@ dependencies = [ [[package]] name = "pyo3-macros" -version = "0.19.2" +version = "0.20.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "dfeb4c99597e136528c6dd7d5e3de5434d1ceaf487436a3f03b2d56b6fc9efd1" +checksum = "05f738b4e40d50b5711957f142878cfa0f28e054aa0ebdfc3fd137a843f74ed3" dependencies = [ "proc-macro2", "pyo3-macros-backend", @@ -168,10 +174,11 @@ dependencies = [ [[package]] name = "pyo3-macros-backend" -version = "0.19.2" +version = "0.20.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "947dc12175c254889edc0c02e399476c2f652b4b9ebd123aa655c224de259536" +checksum = "0fc910d4851847827daf9d6cdd4a823fbdaab5b8818325c5e97a86da79e8881f" dependencies = [ + "heck", "proc-macro2", "quote", "syn", @@ -179,27 +186,27 @@ dependencies = [ [[package]] name = "quote" -version = "1.0.33" +version = "1.0.35" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5267fca4496028628a95160fc423a33e8b2e6af8a5302579e322e4b520293cae" +checksum = "291ec9ab5efd934aaf503a6466c5d5251535d108ee747472c3977cc5acc868ef" dependencies = [ "proc-macro2", ] [[package]] name = "redox_syscall" -version = "0.3.5" +version = "0.4.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "567664f262709473930a4bf9e51bf2ebf3348f2e748ccc50dea20646858f8f29" +checksum = "4722d768eff46b75989dd134e5c353f0d6296e5aaa3132e776cbdb56be7731aa" dependencies = [ "bitflags", ] [[package]] name = "regex" -version = "1.9.5" +version = "1.10.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "697061221ea1b4a94a624f67d0ae2bfe4e22b8a17b6a192afb11046542cc8c47" +checksum = "b62dbe01f0b06f9d8dc7d49e05a0785f153b00b2c227856282f671e0318c9b15" dependencies = [ "aho-corasick", "memchr", @@ -209,9 +216,9 @@ dependencies = [ [[package]] name = "regex-automata" -version = "0.3.8" +version = "0.4.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c2f401f4955220693b56f8ec66ee9c78abffd8d1c4f23dc41a23839eb88f0795" +checksum = "5bb987efffd3c6d0d8f5f89510bb458559eab11e4f869acb20bf845e016259cd" dependencies = [ "aho-corasick", "memchr", @@ -220,13 +227,13 @@ dependencies = [ [[package]] name = "regex-syntax" -version = "0.7.5" +version = "0.8.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "dbb5fb1acd8a1a18b3dd5be62d25485eb770e05afb408a9627d14d451bae12da" +checksum = "c08c74e62047bb2de4ff487b251e4a92e24f48745648451635cec7d591162d9f" [[package]] name = "rio-py" -version = "3.3.4" +version = "3.3.5" dependencies = [ "lazy_static", "pyo3", @@ -241,15 +248,15 @@ checksum = "94143f37725109f92c262ed2cf5e59bce7498c01bcc1502d7b9afe439a4e9f49" [[package]] name = "smallvec" -version = "1.11.0" +version = "1.13.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "62bb4feee49fdd9f707ef802e22365a35de4b7b299de4763d44bfea899442ff9" +checksum = "e6ecd384b10a64542d77071bd64bd7b231f4ed5940fba55e98c3de13824cf3d7" [[package]] name = "syn" -version = "1.0.109" +version = "2.0.48" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "72b64191b275b66ffe2469e8af2c1cfe3bafa67b529ead792a6d0160888b4237" +checksum = "0f3531638e407dfc0814761abb7c00a5b54992b849452a0646b7f65c9f770f3f" dependencies = [ "proc-macro2", "quote", @@ -258,21 +265,21 @@ dependencies = [ [[package]] name = "target-lexicon" -version = "0.12.11" +version = "0.12.13" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9d0e916b1148c8e263850e1ebcbd046f333e0683c724876bb0da63ea4373dc8a" +checksum = "69758bda2e78f098e4ccb393021a0963bb3442eac05f135c30f61b7370bbafae" [[package]] name = "unicode-ident" -version = "1.0.11" +version = "1.0.12" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "301abaae475aa91687eb82514b328ab47a211a533026cb25fc3e519b86adfc3c" +checksum = "3354b9ac3fae1ff6755cb6db53683adb661634f67557942dea4facebec0fee4b" [[package]] name = "unindent" -version = "0.1.11" +version = "0.2.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e1766d682d402817b5ac4490b3c3002d91dfa0d22812f341609f97b08757359c" +checksum = "c7de7d73e1754487cb58364ee906a499937a0dfabd86bcb980fa99ec8c8fa2ce" [[package]] name = "windows-targets" diff --git a/pkgs/development/python-modules/breezy/default.nix b/pkgs/development/python-modules/breezy/default.nix index 505137993b081..9861218d13c78 100644 --- a/pkgs/development/python-modules/breezy/default.nix +++ b/pkgs/development/python-modules/breezy/default.nix @@ -1,8 +1,7 @@ { lib , stdenv , buildPythonPackage -, fetchpatch -, fetchPypi +, fetchFromGitHub , cargo , configobj , cython @@ -29,24 +28,18 @@ buildPythonPackage rec { pname = "breezy"; - version = "3.3.4"; - format = "pyproject"; + version = "3.3.5"; + pyproject = true; - disabled = pythonOlder "3.5"; + disabled = pythonOlder "3.7"; - src = fetchPypi { - inherit pname version; - hash = "sha256-fEEvOfo8YWhx+xuiqD/KNstlso5/K1XJnGY64tkLIwE="; + src = fetchFromGitHub { + owner = "breezy-team"; + repo = "breezy"; + rev = "brz-${version}"; + hash = "sha256-z8NKb8gFgA6dufM12jnZIZ6b1ZMZRzFA3w7t7gECEts="; }; - patches = [ - # Explicitly track which URLs are used for GitLab - (fetchpatch { - url = "https://github.com/breezy-team/breezy/commit/cc9fdf3774253183f726127c2ee191c24640d898.patch"; - hash = "sha256-HTDAW3CPEZ1YBe0wnv6ncWEd0QRHwHawfTplbVDiOGc="; - }) - ]; - cargoDeps = rustPlatform.importCargoLock { lockFile = ./Cargo.lock; }; @@ -129,7 +122,7 @@ buildPythonPackage rec { meta = with lib; { description = "Friendly distributed version control system"; homepage = "https://www.breezy-vcs.org/"; - changelog = "https://github.com/breezy-team/breezy/blob/brz-${version}/doc/en/release-notes/brz-${versions.majorMinor version}.txt"; + changelog = "https://github.com/breezy-team/breezy/blob/${src.rev}/doc/en/release-notes/brz-${versions.majorMinor version}.txt"; license = licenses.gpl2Only; maintainers = [ maintainers.marsam ]; mainProgram = "brz"; diff --git a/pkgs/development/python-modules/brother/default.nix b/pkgs/development/python-modules/brother/default.nix index 5e90a4e901320..54bb6bff1b326 100644 --- a/pkgs/development/python-modules/brother/default.nix +++ b/pkgs/development/python-modules/brother/default.nix @@ -2,7 +2,7 @@ , buildPythonPackage , fetchFromGitHub , dacite -, pysnmplib +, pysnmp-lextudio , pytest-asyncio , pytest-error-for-skips , pytestCheckHook @@ -30,7 +30,7 @@ buildPythonPackage rec { propagatedBuildInputs = [ dacite - pysnmplib + pysnmp-lextudio ]; nativeCheckInputs = [ diff --git a/pkgs/development/python-modules/bthome-ble/default.nix b/pkgs/development/python-modules/bthome-ble/default.nix index 746c918120ec7..faa8582b6b22e 100644 --- a/pkgs/development/python-modules/bthome-ble/default.nix +++ b/pkgs/development/python-modules/bthome-ble/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "bthome-ble"; - version = "3.4.1"; + version = "3.5.0"; format = "pyproject"; disabled = pythonOlder "3.9"; @@ -22,7 +22,7 @@ buildPythonPackage rec { owner = "Bluetooth-Devices"; repo = "bthome-ble"; rev = "refs/tags/v${version}"; - hash = "sha256-1Srimb+MfWiX5NdmDQHJsmn6LatWd8nmXaB4uXdHKWY="; + hash = "sha256-7/09RasnW4cTUbwf3N+9DxsGG9pCaqAODX2UNWvlxZg="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/bx-py-utils/default.nix b/pkgs/development/python-modules/bx-py-utils/default.nix index 55d1c971cf216..582bc6b8ca0c6 100644 --- a/pkgs/development/python-modules/bx-py-utils/default.nix +++ b/pkgs/development/python-modules/bx-py-utils/default.nix @@ -14,7 +14,7 @@ buildPythonPackage rec { pname = "bx-py-utils"; - version = "88"; + version = "91"; disabled = pythonOlder "3.9"; @@ -24,7 +24,7 @@ buildPythonPackage rec { owner = "boxine"; repo = "bx_py_utils"; rev = "refs/tags/v${version}"; - hash = "sha256-Ds7Ljgp6OdbFkEWl1E0X03o0oJ/Nk8U3pO/ztK42DbY="; + hash = "sha256-W8NP5h9fHyTJj6TIpBunoPcNOu8eWV1rA8ZaoGUnmBQ="; }; postPatch = '' diff --git a/pkgs/development/python-modules/cantools/default.nix b/pkgs/development/python-modules/cantools/default.nix index d656c85dca01d..05a52e2bca088 100644 --- a/pkgs/development/python-modules/cantools/default.nix +++ b/pkgs/development/python-modules/cantools/default.nix @@ -17,14 +17,14 @@ buildPythonPackage rec { pname = "cantools"; - version = "39.4.2"; + version = "39.4.3"; pyproject = true; disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; - hash = "sha256-gGmo9HO7FnmZC+oJA/OiLVjfVJWuu/CfWNSfYnURthk="; + hash = "sha256-eqo9JGvFMouynGgfyBYtKAC+Be4JWz7blHD6FHj55QY="; }; postPatch = '' diff --git a/pkgs/development/python-modules/celery/default.nix b/pkgs/development/python-modules/celery/default.nix index 7c22634f2a3c5..fa7ebb248adb2 100644 --- a/pkgs/development/python-modules/celery/default.nix +++ b/pkgs/development/python-modules/celery/default.nix @@ -18,6 +18,7 @@ , pytest-click , pytest-subtests , pytest-timeout +, pytest-xdist , pytestCheckHook , python-dateutil , pythonOlder @@ -63,6 +64,7 @@ buildPythonPackage rec { pytest-click pytest-subtests pytest-timeout + pytest-xdist pytestCheckHook ]; @@ -77,6 +79,10 @@ buildPythonPackage rec { disabledTests = [ "msgpack" "test_check_privileges_no_fchown" + # fails with pytest-xdist + "test_itercapture_limit" + "test_stamping_headers_in_options" + "test_stamping_with_replace" ] ++ lib.optionals stdenv.isDarwin [ # too many open files on hydra "test_cleanup" diff --git a/pkgs/development/python-modules/censys/default.nix b/pkgs/development/python-modules/censys/default.nix index f4b1f97f8cfaa..901f70dddd2e7 100644 --- a/pkgs/development/python-modules/censys/default.nix +++ b/pkgs/development/python-modules/censys/default.nix @@ -18,7 +18,7 @@ buildPythonPackage rec { pname = "censys"; - version = "2.2.10"; + version = "2.2.11"; pyproject = true; disabled = pythonOlder "3.7"; @@ -27,7 +27,7 @@ buildPythonPackage rec { owner = "censys"; repo = "censys-python"; rev = "refs/tags/v${version}"; - hash = "sha256-rjLTEaHSBB6igffNGt4qJZeSyIn1Cc1ZGEGfEoMj7OQ="; + hash = "sha256-/aB8rsyymNTXJLsf/IkA6o7M/mzyao10cl7kbxHEzGc="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/certbot/default.nix b/pkgs/development/python-modules/certbot/default.nix index 621a0f991856f..0689319840e61 100644 --- a/pkgs/development/python-modules/certbot/default.nix +++ b/pkgs/development/python-modules/certbot/default.nix @@ -10,7 +10,7 @@ , distro , josepy , parsedatetime -, pyRFC3339 +, pyrfc3339 , pyopenssl , pytz , requests @@ -47,7 +47,7 @@ buildPythonPackage rec { distro josepy parsedatetime - pyRFC3339 + pyrfc3339 pyopenssl pytz requests diff --git a/pkgs/development/python-modules/certipy-ad/default.nix b/pkgs/development/python-modules/certipy-ad/default.nix index ce55ab9829250..bccf5c066799d 100644 --- a/pkgs/development/python-modules/certipy-ad/default.nix +++ b/pkgs/development/python-modules/certipy-ad/default.nix @@ -12,7 +12,7 @@ , pyopenssl , pythonOlder , requests -, requests_ntlm +, requests-ntlm , unicrypto }: @@ -47,7 +47,7 @@ buildPythonPackage rec { pycryptodome pyopenssl requests - requests_ntlm + requests-ntlm unicrypto ]; diff --git a/pkgs/development/python-modules/cirq-ft/default.nix b/pkgs/development/python-modules/cirq-ft/default.nix index d307191dd9afb..a0fbbc40da1f2 100644 --- a/pkgs/development/python-modules/cirq-ft/default.nix +++ b/pkgs/development/python-modules/cirq-ft/default.nix @@ -7,15 +7,20 @@ , nbconvert , nbformat , pytestCheckHook +, setuptools }: buildPythonPackage rec { pname = "cirq-ft"; - format = "setuptools"; + pyproject = true; inherit (cirq-core) version src meta; sourceRoot = "${src.name}/${pname}"; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ attrs cachetools @@ -31,6 +36,11 @@ buildPythonPackage rec { pytestCheckHook ]; + disabledTests = [ + # Upstream doesn't always adjust the version + "test_version" + ]; + # cirq's importlib hook doesn't work here #pythonImportsCheck = [ "cirq_ft" ]; diff --git a/pkgs/development/python-modules/cirq-google/default.nix b/pkgs/development/python-modules/cirq-google/default.nix index 4f185c825c340..c2d36a4f796d0 100644 --- a/pkgs/development/python-modules/cirq-google/default.nix +++ b/pkgs/development/python-modules/cirq-google/default.nix @@ -1,27 +1,23 @@ { buildPythonPackage , cirq-core +, freezegun , google-api-core , protobuf , pytestCheckHook -, freezegun , pythonRelaxDepsHook +, setuptools }: buildPythonPackage rec { pname = "cirq-google"; - format = "setuptools"; + pyproject = true; inherit (cirq-core) version src meta; sourceRoot = "${src.name}/${pname}"; - postPatch = '' - substituteInPlace requirements.txt \ - --replace "google-api-core[grpc] >= 1.14.0, < 2.0.0dev" "google-api-core[grpc] >= 1.14.0, < 3.0.0dev" \ - --replace "protobuf >= 3.15.0, < 4" "protobuf >= 3.15.0" - ''; - nativeBuildInputs = [ pythonRelaxDepsHook + setuptools ]; propagatedBuildInputs = [ @@ -40,6 +36,8 @@ buildPythonPackage rec { "cirq_google/_version_test.py" # Trace/BPT trap: 5 "cirq_google/engine/calibration_test.py" + # Very time-consuming + "cirq_google/engine/*_test.py" ]; disabledTests = [ diff --git a/pkgs/development/python-modules/clarabel/Cargo.lock b/pkgs/development/python-modules/clarabel/Cargo.lock new file mode 100644 index 0000000000000..ffc1908e7b752 --- /dev/null +++ b/pkgs/development/python-modules/clarabel/Cargo.lock @@ -0,0 +1,1487 @@ +# This file is automatically @generated by Cargo. +# It is not intended for manual editing. +version = 3 + +[[package]] +name = "accelerate-src" +version = "0.3.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = 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rustPlatform.importCargoLock { + lockFile = ./Cargo.lock; + }; + + postPatch = '' + ln -s ${./Cargo.lock} ./Cargo.lock + ''; + + nativeBuildInputs = with rustPlatform; [ + cargoSetupHook + maturinBuildHook + ]; + + buildInputs = lib.optional stdenv.isDarwin libiconv; + + propagatedBuildInputs = [ + numpy + scipy + ]; + + pythonImportsCheck = [ + "clarabel" + ]; + + # no tests but run the same examples as .github/workflows/pypi.yaml + checkPhase = '' + runHook preCheck + python examples/python/example_sdp.py + python examples/python/example_qp.py + runHook postCheck + ''; + + meta = { + changelog = "https://github.com/oxfordcontrol/Clarabel.rs/releases/tag/v${version}/CHANGELOG.md"; + description = "Conic Interior Point Solver"; + homepage = "https://github.com/oxfordcontrol/Clarabel.rs"; + license = lib.licenses.asl20; + maintainers = with lib.maintainers; [ a-n-n-a-l-e-e ]; + }; +} diff --git a/pkgs/development/python-modules/clarifai-grpc/default.nix b/pkgs/development/python-modules/clarifai-grpc/default.nix index dc0ad33f60eea..ea3bf5c530d36 100644 --- a/pkgs/development/python-modules/clarifai-grpc/default.nix +++ b/pkgs/development/python-modules/clarifai-grpc/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "clarifai-grpc"; - version = "10.0.3"; + version = "10.0.10"; pyproject = true; disabled = pythonOlder "3.8"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "Clarifai"; repo = "clarifai-python-grpc"; rev = "refs/tags/${version}"; - hash = "sha256-mIiUwqagFlZXkm/diQlCXMBDAbnWNG4BNMHVedo5u/M="; + hash = "sha256-IcMnzfkq4eSXh2KsxSog64RQbJhXkEWjma6LNkzDX0Y="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/clickhouse-connect/default.nix b/pkgs/development/python-modules/clickhouse-connect/default.nix index 9f6e4519c2628..b44188ffcc71d 100644 --- a/pkgs/development/python-modules/clickhouse-connect/default.nix +++ b/pkgs/development/python-modules/clickhouse-connect/default.nix @@ -23,7 +23,7 @@ }: buildPythonPackage rec { pname = "clickhouse-connect"; - version = "0.6.23"; + version = "0.7.0"; format = "setuptools"; @@ -33,7 +33,7 @@ buildPythonPackage rec { repo = "clickhouse-connect"; owner = "ClickHouse"; rev = "refs/tags/v${version}"; - hash = "sha256-Gaiq5t/u5LJeJR5nNNfBvdNaFEycqgxVCHFETIvsUUU="; + hash = "sha256-RpuBKdjjSjJJ9UU7VW20gD9Rouj0oxv72sZZaUa/BfY="; }; nativeBuildInputs = [ cython_3 ]; diff --git a/pkgs/development/python-modules/cmdstanpy/default.nix b/pkgs/development/python-modules/cmdstanpy/default.nix index 41f06c59cc2b9..717f85dc8e54b 100644 --- a/pkgs/development/python-modules/cmdstanpy/default.nix +++ b/pkgs/development/python-modules/cmdstanpy/default.nix @@ -2,6 +2,7 @@ , buildPythonPackage , fetchFromGitHub , substituteAll +, fetchpatch , cmdstan , pythonRelaxDepsHook , setuptools @@ -11,6 +12,7 @@ , stanio , xarray , pytestCheckHook +, stdenv }: buildPythonPackage rec { @@ -30,6 +32,11 @@ buildPythonPackage rec { src = ./use-nix-cmdstan-path.patch; cmdstan = "${cmdstan}/opt/cmdstan"; }) + (fetchpatch { + name = "stan-2.34-fix-parsing-of-unit_e-output-files.patch"; + url = "https://github.com/stan-dev/cmdstanpy/commit/144d641739ccd1109055d13b5b96e4e76607305d.patch"; + hash = "sha256-21hcbK3Xs7vGBNRs4hMfY5g7jIwEG49WYnsOxYJ6ccs="; + }) ]; postPatch = '' @@ -75,6 +82,8 @@ buildPythonPackage rec { # These tests use the flag -DSTAN_THREADS which doesn't work in cmdstan (missing file) "test_multi_proc_threads" "test_compile_force" + ] ++ lib.optionals stdenv.isDarwin [ + "test_init_types" # CmdStan error: error during processing Operation not permitted ]; pythonImportsCheck = [ "cmdstanpy" ]; @@ -84,7 +93,6 @@ buildPythonPackage rec { description = "A lightweight interface to Stan for Python users"; changelog = "https://github.com/stan-dev/cmdstanpy/releases/tag/v${version}"; license = lib.licenses.bsd3; - platforms = lib.platforms.linux; maintainers = with lib.maintainers; [ tomasajt ]; }; } diff --git a/pkgs/development/python-modules/coinmetrics-api-client/default.nix b/pkgs/development/python-modules/coinmetrics-api-client/default.nix index 443d24d3f695c..8c0a04f59cd2e 100644 --- a/pkgs/development/python-modules/coinmetrics-api-client/default.nix +++ b/pkgs/development/python-modules/coinmetrics-api-client/default.nix @@ -17,7 +17,7 @@ buildPythonPackage rec { pname = "coinmetrics-api-client"; - version = "2023.11.27.17"; + version = "2024.1.17.17"; pyproject = true; disabled = pythonOlder "3.9"; @@ -27,7 +27,7 @@ buildPythonPackage rec { src = fetchPypi { inherit version; pname = "coinmetrics_api_client"; - hash = "sha256-UDcegRnDtz6LYAN9S8wiW/TCsIsQHr5sSX+chEkeFnw="; + hash = "sha256-mYA67oiWWvEdNU2MrjtOPyDW3LbxH/mgh+MOuZg2ljo="; }; pythonRelaxDeps = [ diff --git a/pkgs/development/python-modules/colorful/default.nix b/pkgs/development/python-modules/colorful/default.nix index d57be5da2b4cc..9deae7c071fc9 100644 --- a/pkgs/development/python-modules/colorful/default.nix +++ b/pkgs/development/python-modules/colorful/default.nix @@ -7,7 +7,7 @@ buildPythonPackage rec { pname = "colorful"; - version = "0.5.5"; + version = "0.5.6"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -16,7 +16,7 @@ buildPythonPackage rec { owner = "timofurrer"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-fgxbj1WE9JcGt+oEcBguL0wQEWIn5toRTLWsvCFO3k8="; + hash = "sha256-8rHJIsHiyfjmjlGiEyrzvEwKgi1kP4Njm731mlFDMIU="; }; nativeCheckInputs = [ diff --git a/pkgs/development/python-modules/comm/default.nix b/pkgs/development/python-modules/comm/default.nix index e03eae5ffdbb1..3c2fa837a8cd7 100644 --- a/pkgs/development/python-modules/comm/default.nix +++ b/pkgs/development/python-modules/comm/default.nix @@ -8,7 +8,7 @@ let pname = "comm"; - version = "0.2.0"; + version = "0.2.1"; in buildPythonPackage { inherit pname version; @@ -18,7 +18,7 @@ buildPythonPackage { owner = "ipython"; repo = "comm"; rev = "refs/tags/v${version}"; - hash = "sha256-bErZNTm0spO0A/Lc8kq5u7sB0FMXm/WMWtFbCNGJVXE="; + hash = "sha256-iyO3q9E2lYU1rMYTnsa+ZJYh+Hq72LEvE9ynebFIBUk="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/correctionlib/default.nix b/pkgs/development/python-modules/correctionlib/default.nix index 15f48da9264fd..81a9a1fdb972f 100644 --- a/pkgs/development/python-modules/correctionlib/default.nix +++ b/pkgs/development/python-modules/correctionlib/default.nix @@ -18,12 +18,12 @@ buildPythonPackage rec { pname = "correctionlib"; - version = "2.4.0"; + version = "2.5.0"; pyproject = true; src = fetchPypi { inherit pname version; - hash = "sha256-bQKcS8vktvD62zvSeaBtoJw36TSpo0gEpKm0HI3AuXg="; + hash = "sha256-H8QCdU6piBdqJEJOGVbsz+6eyMhFVuwTpIHKUoKaf4A="; }; nativeBuildInputs = [ @@ -62,6 +62,5 @@ buildPythonPackage rec { homepage = "https://cms-nanoaod.github.io/correctionlib/"; license = with licenses; [ bsd3 ]; maintainers = with maintainers; [ veprbl ]; - broken = versionAtLeast pydantic.version "2"; }; } diff --git a/pkgs/development/python-modules/cron-descriptor/default.nix b/pkgs/development/python-modules/cron-descriptor/default.nix index bb946780009eb..d4283b3af6ec1 100644 --- a/pkgs/development/python-modules/cron-descriptor/default.nix +++ b/pkgs/development/python-modules/cron-descriptor/default.nix @@ -8,13 +8,13 @@ buildPythonPackage rec { pname = "cron_descriptor"; - version = "1.2.35"; + version = "1.4"; src = fetchFromGitHub { owner = "Salamek"; repo = "cron-descriptor"; rev = "refs/tags/${version}"; - hash = "sha256-m+h91cddmEPHCeUWWNpTvb89mFwm8ty8tTnw3YDjCFo="; + hash = "sha256-r5TMatjNYaPhPxhJbBGGshQf6VxKyBV6Za1lQoblxYA="; }; # remove tests_require, as we don't do linting anyways diff --git a/pkgs/development/python-modules/crontab/default.nix b/pkgs/development/python-modules/crontab/default.nix new file mode 100644 index 0000000000000..fea3e9909b701 --- /dev/null +++ b/pkgs/development/python-modules/crontab/default.nix @@ -0,0 +1,45 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, pytestCheckHook +, pythonOlder +, python-dateutil +, pytz +, setuptools +}: + +buildPythonPackage rec { + pname = "crontab"; + version = "0.23.0"; + pyproject = true; + + disabled = pythonOlder "3.8"; + + src = fetchFromGitHub { + owner = "josiahcarlson"; + repo = "parse-crontab"; + rev = "refs/tags/${version}"; + hash = "sha256-8vMkgBU1jIluo9+hAvk2KNM+Wn0+PvJqFNwX+JLXD+w="; + }; + + nativeBuildInputs = [ + setuptools + ]; + + nativeCheckInputs = [ + pytestCheckHook + python-dateutil + pytz + ]; + + pythonImportsCheck = [ + "crontab" + ]; + + meta = with lib; { + description = "Parse and use crontab schedules in Python"; + homepage = "https://github.com/josiahcarlson/parse-crontab"; + license = licenses.lgpl21Only; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/cryptodatahub/default.nix b/pkgs/development/python-modules/cryptodatahub/default.nix index 7345692977969..e19a4137e4f3d 100644 --- a/pkgs/development/python-modules/cryptodatahub/default.nix +++ b/pkgs/development/python-modules/cryptodatahub/default.nix @@ -1,36 +1,38 @@ { lib -, buildPythonPackage -, fetchFromGitLab - -# build-system -, setuptools - -# dependencies , asn1crypto , attrs +, beautifulsoup4 +, buildPythonPackage +, fetchFromGitLab , pathlib2 +, pyfakefs , python-dateutil +, pythonOlder +, setuptools , six -, urllib3 - -# tests -, beautifulsoup4 -, pyfakefs , unittestCheckHook +, urllib3 }: buildPythonPackage rec { pname = "cryptodatahub"; - version = "0.10.1"; - format = "pyproject"; + version = "0.12.2"; + pyproject = true; + + disabled = pythonOlder "3.7"; src = fetchFromGitLab { owner = "coroner"; repo = "cryptodatahub"; - rev = "v${version}"; - hash = "sha256-eLdK5gFrLnbIBB1NTeQzpdCLPdATVjzPn5LhhUsDuwo="; + rev = "refs/tags/v${version}"; + hash = "sha256-zVHHBQYcl26zTtXPAs/AgKOojKQORu08rpkfY0l1zjM="; }; + postPatch = '' + substituteInPlace requirements.txt \ + --replace-warn "attrs>=20.3.0,<22.0.1" "attrs>=20.3.0" + ''; + nativeBuildInputs = [ setuptools ]; @@ -44,23 +46,28 @@ buildPythonPackage rec { urllib3 ]; - pythonImportsCheck = [ "cryptodatahub" ]; - nativeCheckInputs = [ beautifulsoup4 pyfakefs unittestCheckHook ]; + pythonImportsCheck = [ + "cryptodatahub" + ]; + + preCheck = '' # failing tests rm test/updaters/test_common.py + # Tests require network access + rm test/common/test_utils.py ''; meta = with lib; { description = "Repository of cryptography-related data"; homepage = "https://gitlab.com/coroner/cryptodatahub"; - changelog = "https://gitlab.com/coroner/cryptodatahub/-/blob/${src.rev}/CHANGELOG.rst"; + changelog = "https://gitlab.com/coroner/cryptodatahub/-/blob/${version}/CHANGELOG.rst"; license = licenses.mpl20; maintainers = with maintainers; [ ]; }; diff --git a/pkgs/development/python-modules/cryptography/default.nix b/pkgs/development/python-modules/cryptography/default.nix index 4acb8c6dcd197..770561126fb34 100644 --- a/pkgs/development/python-modules/cryptography/default.nix +++ b/pkgs/development/python-modules/cryptography/default.nix @@ -4,6 +4,7 @@ , callPackage , cargo , cffi +, cryptography-vectors ? (callPackage ./vectors.nix { }) , fetchPypi , hypothesis , iso8601 @@ -24,9 +25,6 @@ , setuptoolsRustBuildHook }: -let - cryptography-vectors = callPackage ./vectors.nix { }; -in buildPythonPackage rec { pname = "cryptography"; version = "41.0.7"; # Also update the hash in vectors.nix diff --git a/pkgs/development/python-modules/cryptolyzer/default.nix b/pkgs/development/python-modules/cryptolyzer/default.nix index 27c5150f37151..61d5a4a3f664c 100644 --- a/pkgs/development/python-modules/cryptolyzer/default.nix +++ b/pkgs/development/python-modules/cryptolyzer/default.nix @@ -1,35 +1,56 @@ { lib , attrs +, beautifulsoup4 , buildPythonPackage , certvalidator +, colorama , cryptoparser +, dnspython , fetchPypi +, pathlib2 +, pyfakefs +, python-dateutil , pythonOlder , requests -, six +, setuptools , urllib3 }: buildPythonPackage rec { pname = "cryptolyzer"; - version = "0.12.1"; - format = "setuptools"; + version = "0.12.2"; + pyproject = true; disabled = pythonOlder "3.7"; src = fetchPypi { pname = "CryptoLyzer"; inherit version; - hash = "sha256-1Ec57A5lCjy9FsA3vDmCyfOeHZaQz01FNiKyNV3eJfc="; + hash = "sha256-UffFdQ+MiB8kPzqnmWdnGRwAAM9wJwpUDK2bPvPvH0c="; }; + postPatch = '' + substituteInPlace requirements.txt \ + --replace-warn "attrs>=20.3.0,<22.0.1" "attrs>=20.3.0" \ + --replace-warn "bs4" "beautifulsoup4" + ''; + + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ - certvalidator attrs - six - urllib3 + beautifulsoup4 + certvalidator + colorama cryptoparser + dnspython + pathlib2 + pyfakefs + python-dateutil requests + urllib3 ]; # Tests require networking diff --git a/pkgs/development/python-modules/cryptoparser/default.nix b/pkgs/development/python-modules/cryptoparser/default.nix index a04c424e61e3b..e377b35ee5be1 100644 --- a/pkgs/development/python-modules/cryptoparser/default.nix +++ b/pkgs/development/python-modules/cryptoparser/default.nix @@ -12,15 +12,20 @@ buildPythonPackage rec { pname = "cryptoparser"; - version = "0.12.1"; - format = "pyproject"; + version = "0.12.2"; + pyproject = true; src = fetchPypi { pname = "CryptoParser"; inherit version; - hash = "sha256-Q05koDfVaVgiQYhULkwzl9uzUIumO8ZIGJPfxRBUsj0="; + hash = "sha256-SG7I/uOWZapjZ5zGW1HndGqaYc2k2aRWf3IWlartIJE="; }; + postPatch = '' + substituteInPlace requirements.txt \ + --replace-warn "attrs>=20.3.0,<22.0.1" "attrs>=20.3.0" + ''; + nativeBuildInputs = [ setuptools ]; diff --git a/pkgs/development/python-modules/crytic-compile/default.nix b/pkgs/development/python-modules/crytic-compile/default.nix index 26e7080c21399..56dab1fbbb545 100644 --- a/pkgs/development/python-modules/crytic-compile/default.nix +++ b/pkgs/development/python-modules/crytic-compile/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "crytic-compile"; - version = "0.3.5"; + version = "0.3.6"; format = "setuptools"; disabled = pythonOlder "3.8"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "crytic"; repo = "crytic-compile"; rev = "refs/tags/${version}"; - hash = "sha256-aO2K0lc3qjKK8CZAbu/lotI5QJ/R+8npSIRX4a6HdrI="; + hash = "sha256-dQynnILHt6YO5qtvVVwcxRwtBJgokyfsQ5ubH15dkuA="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/cvelib/default.nix b/pkgs/development/python-modules/cvelib/default.nix index 0f9d292a51514..c269c351c1da9 100644 --- a/pkgs/development/python-modules/cvelib/default.nix +++ b/pkgs/development/python-modules/cvelib/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "cvelib"; - version = "1.2.1"; + version = "1.3.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -21,7 +21,7 @@ buildPythonPackage rec { owner = "RedHatProductSecurity"; repo = "cvelib"; rev = "tags/${version}"; - hash = "sha256-hJPcxnc4iQzsYNNVJ9fw6yQl+5K7pdtjHT6oMmBx/Zs="; + hash = "sha256-PCZUAKgE80PD//4qK8ap55IN9vtx9WdpRZUAC3UdaWM="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/cvss/default.nix b/pkgs/development/python-modules/cvss/default.nix index 140852cb98be1..120325a7b8e58 100644 --- a/pkgs/development/python-modules/cvss/default.nix +++ b/pkgs/development/python-modules/cvss/default.nix @@ -2,47 +2,44 @@ , buildPythonPackage , fetchFromGitHub , jsonschema -, pytestCheckHook +, unittestCheckHook , pythonOlder +, setuptools }: buildPythonPackage rec { pname = "cvss"; - version = "2.6"; - format = "setuptools"; + version = "3.0"; + pyproject = true; disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "RedHatProductSecurity"; - repo = pname; + repo = "cvss"; rev = "refs/tags/v${version}"; - hash = "sha256-gD9MreJQPaxziy02Wt3BGFiIoQ/+pW3KqiNfNlTijJY="; + hash = "sha256-xrkWpE13Y4KgQEZjitWE3Ka+IyfShqE2cj0/yzsAnX4="; }; + nativeBuildInputs = [ + setuptools + ]; + nativeCheckInputs = [ jsonschema - pytestCheckHook + unittestCheckHook ]; pythonImportsCheck = [ "cvss" ]; - disabledTests = [ - # Tests require additional data - "test_calculator" - "test_cvsslib" - "test_json_ordering" - "test_json_schema_repr" - "test_random" - "test_rh_vector" - "test_simple" - "test_simple_31" - ]; + preCheck = '' + cd tests + ''; meta = with lib; { - description = "Library for CVSS2/3"; + description = "Library for CVSS2/3/4"; homepage = "https://github.com/RedHatProductSecurity/cvss"; changelog = "https://github.com/RedHatProductSecurity/cvss/releases/tag/v${version}"; license = with licenses; [ lgpl3Plus ]; diff --git a/pkgs/development/python-modules/cvxpy/default.nix b/pkgs/development/python-modules/cvxpy/default.nix index 3d34b6edda8a2..a8e4b6dc9618e 100644 --- a/pkgs/development/python-modules/cvxpy/default.nix +++ b/pkgs/development/python-modules/cvxpy/default.nix @@ -1,6 +1,7 @@ { lib , stdenv , buildPythonPackage +, clarabel , cvxopt , ecos , fetchPypi @@ -18,14 +19,14 @@ buildPythonPackage rec { pname = "cvxpy"; - version = "1.4.1"; + version = "1.4.2"; format = "pyproject"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-ep7zTjxX/4yETYbwo4NPtVda8ZIzlHY53guld8YSLj4="; + hash = "sha256-CjhqV4jb14t7IN0HFSTsY2yPpys2KOafGrxxTI+YEeU="; }; # we need to patch out numpy version caps from upstream @@ -40,6 +41,7 @@ buildPythonPackage rec { ]; propagatedBuildInputs = [ + clarabel cvxopt ecos numpy diff --git a/pkgs/development/python-modules/cwl-upgrader/default.nix b/pkgs/development/python-modules/cwl-upgrader/default.nix index cfd1cebd66200..874af6d659413 100644 --- a/pkgs/development/python-modules/cwl-upgrader/default.nix +++ b/pkgs/development/python-modules/cwl-upgrader/default.nix @@ -7,29 +7,33 @@ , pythonOlder , ruamel-yaml , schema-salad +, setuptools }: buildPythonPackage rec { pname = "cwl-upgrader"; - version = "1.2.10"; - format = "setuptools"; + version = "1.2.11"; + pyproject = true; disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "common-workflow-language"; - repo = pname; + repo = "cwl-upgrader"; rev = "refs/tags/v${version}"; - hash = "sha256-D/MIvn/jyxK++CMgKM8EYDVo94WFgdlTtMZjsXoQ4W4="; + hash = "sha256-P8607Io/KIJqAnrValM+rRK59tQITcC/jyGwkge8qN0="; }; postPatch = '' - substituteInPlace setup.py \ - --replace "ruamel.yaml >= 0.15, < 0.17.22" "ruamel.yaml" \ - --replace "setup_requires=PYTEST_RUNNER," "" - sed -i "/ruamel.yaml/d" setup.py + # Version detection doesn't work for schema_salad + substituteInPlace pyproject.toml \ + --replace '"schema_salad",' "" ''; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ mypy-extensions ruamel-yaml @@ -46,9 +50,9 @@ buildPythonPackage rec { ]; meta = with lib; { - description = "Library to interface with Yolink"; - homepage = "https://github.com/common-workflow-language/cwl-utils"; - changelog = "https://github.com/common-workflow-language/cwl-utils/releases/tag/v${version}"; + description = "Library to upgrade CWL syntax to a newer version"; + homepage = "https://github.com/common-workflow-language/cwl-upgrader"; + changelog = "https://github.com/common-workflow-language/cwl-upgrader/releases/tag/v${version}"; license = licenses.asl20; maintainers = with maintainers; [ fab ]; }; diff --git a/pkgs/development/python-modules/cx-freeze/default.nix b/pkgs/development/python-modules/cx-freeze/default.nix index 91cae6b49d7fe..a3c71a2776bcd 100644 --- a/pkgs/development/python-modules/cx-freeze/default.nix +++ b/pkgs/development/python-modules/cx-freeze/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "cx-freeze"; - version = "6.15.12"; + version = "6.15.13"; pyproject = true; disabled = pythonOlder "3.8"; @@ -19,7 +19,7 @@ buildPythonPackage rec { src = fetchPypi { pname = "cx_Freeze"; inherit version; - hash = "sha256-Ak4OC94xD21daVdsbYSvFxO1YKJcccJ8xoCBk50cWww="; + hash = "sha256-VeOgoVrga9dPJ0W9S3Ye/9Ff5yEOlP2DlDf0sDUh1yo="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/cyclonedx-python-lib/default.nix b/pkgs/development/python-modules/cyclonedx-python-lib/default.nix index e4bd3686b161f..6d5aa4032c2d0 100644 --- a/pkgs/development/python-modules/cyclonedx-python-lib/default.nix +++ b/pkgs/development/python-modules/cyclonedx-python-lib/default.nix @@ -23,8 +23,8 @@ buildPythonPackage rec { pname = "cyclonedx-python-lib"; - version = "6.3.0"; - format = "pyproject"; + version = "6.4.1"; + pyproject = true; disabled = pythonOlder "3.9"; @@ -32,7 +32,7 @@ buildPythonPackage rec { owner = "CycloneDX"; repo = "cyclonedx-python-lib"; rev = "refs/tags/v${version}"; - hash = "sha256-Q4mz6qNqR7lkZqb70COBkrXsv0+z5TEC149dnSpzhtI="; + hash = "sha256-IhiH1Vk/Wf6cTxijxE1erkQozY+vOVd5pu6tAVUoDJM="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/cypari2/default.nix b/pkgs/development/python-modules/cypari2/default.nix index 5b5ca31e4d028..cf808fe263a4e 100644 --- a/pkgs/development/python-modules/cypari2/default.nix +++ b/pkgs/development/python-modules/cypari2/default.nix @@ -5,24 +5,24 @@ , fetchPypi , pari , gmp -, cython +, cython_3 , cysignals }: buildPythonPackage rec { pname = "cypari2"; # upgrade may break sage, please test the sage build or ping @timokau on upgrade - version = "2.1.3"; + version = "2.1.4"; format = "setuptools"; src = fetchPypi { inherit pname version; - sha256 = "17beb467d3cb39fffec3227c468f0dd8db8a09129faeb95a6bb4c84b2b6c6683"; + sha256 = "sha256-76SkTZb2k8sRVtof1vzMEw2vz5wZr0GFz3cL9E0A2/w="; }; patches = [ # patch to avoid some segfaults in sage's totallyreal.pyx test. - # (https://trac.sagemath.org/ticket/27267). depends on Cython patch. + # (https://trac.sagemath.org/ticket/27267). (fetchpatch { name = "use-trashcan-for-gen.patch"; url = "https://raw.githubusercontent.com/sagemath/sage/b6ea17ef8e4d652de0a85047bac8d41e90b25555/build/pkgs/cypari/patches/trashcan.patch"; @@ -30,20 +30,13 @@ buildPythonPackage rec { }) ]; - # This differs slightly from the default python installPhase in that it pip-installs - # "." instead of "*.whl". - # That is because while the default install phase succeeds to build the package, - # it fails to generate the file "auto_paridecl.pxd". - installPhase = '' - export PYTHONPATH="$out/${python.sitePackages}:$PYTHONPATH" - - # install "." instead of "*.whl" - pip install . --no-index --no-warn-script-location --prefix="$out" --no-cache + preBuild = '' + # generate cythonized extensions (auto_paridecl.pxd is crucial) + ${python.pythonOnBuildForHost.interpreter} setup.py build_ext --inplace ''; nativeBuildInputs = [ pari - python.pythonOnBuildForHost.pkgs.pip ]; buildInputs = [ @@ -52,10 +45,11 @@ buildPythonPackage rec { propagatedBuildInputs = [ cysignals - cython + cython_3 ]; checkPhase = '' + test -f "$out/${python.sitePackages}/cypari2/auto_paridecl.pxd" make check ''; diff --git a/pkgs/development/python-modules/daiquiri/default.nix b/pkgs/development/python-modules/daiquiri/default.nix index c7d6602de5fee..c3e5436de9699 100644 --- a/pkgs/development/python-modules/daiquiri/default.nix +++ b/pkgs/development/python-modules/daiquiri/default.nix @@ -9,12 +9,12 @@ buildPythonPackage rec { pname = "daiquiri"; - version = "3.2.3"; + version = "3.2.5.1"; pyproject = true; src = fetchPypi { inherit pname version; - hash = "sha256-P8rvN2/WgIi5I5E3R6t+4S2Lf7Kvf4xfIOWYCZfp6DU="; + hash = "sha256-Xy6G1vyovDjR6a36YFGE32/eo3AuB8oC0Wqj0AQ7Luw="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/darkdetect/default.nix b/pkgs/development/python-modules/darkdetect/default.nix index 534d9a0573ce8..28e3c141a1eee 100644 --- a/pkgs/development/python-modules/darkdetect/default.nix +++ b/pkgs/development/python-modules/darkdetect/default.nix @@ -39,6 +39,6 @@ buildPythonPackage rec { description = "Detect OS Dark Mode from Python"; homepage = "https://github.com/albertosottile/darkdetect"; license = licenses.bsd3; - maintainers = with maintainers; [ paveloom ]; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/development/python-modules/dask-awkward/default.nix b/pkgs/development/python-modules/dask-awkward/default.nix index a7b80faf973e3..0875430cc383d 100644 --- a/pkgs/development/python-modules/dask-awkward/default.nix +++ b/pkgs/development/python-modules/dask-awkward/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "dask-awkward"; - version = "2024.1.1"; + version = "2024.2.0"; pyproject = true; disabled = pythonOlder "3.8"; @@ -22,7 +22,7 @@ buildPythonPackage rec { owner = "dask-contrib"; repo = "dask-awkward"; rev = "refs/tags/${version}"; - hash = "sha256-8nha0h1f/pLl7YmUc5HzlqwNRE/gRpRV2PudkddMHqg="; + hash = "sha256-oBGja1dt9UbHym0c5K/pAMXNErryr3u6IhDRuhwTvG0="; }; pythonRelaxDeps = [ diff --git a/pkgs/development/python-modules/dask-histogram/default.nix b/pkgs/development/python-modules/dask-histogram/default.nix index c465baf233091..0931cf6060c05 100644 --- a/pkgs/development/python-modules/dask-histogram/default.nix +++ b/pkgs/development/python-modules/dask-histogram/default.nix @@ -10,14 +10,14 @@ buildPythonPackage rec { pname = "dask-histogram"; - version = "2023.10.0"; - format = "pyproject"; + version = "2024.2.0"; + pyproject = true; src = fetchFromGitHub { owner = "dask-contrib"; repo = "dask-histogram"; rev = "refs/tags/${version}"; - hash = "sha256-ugAqNdvCROCCXURwsGLpnl/lBEAremvTI7MVa/TWt6c="; + hash = "sha256-YU5i7mGOZxj/pvpkZLwohoSuHJgS3zkHYVuj1Vtyrj4="; }; nativeBuildInputs = [ @@ -41,6 +41,7 @@ buildPythonPackage rec { meta = with lib; { description = "Histograms with task scheduling"; homepage = "https://dask-histogram.readthedocs.io/"; + changelog = "https://github.com/dask-contrib/dask-histogram/releases/tag/${version}"; license = with licenses; [ bsd3 ]; maintainers = with maintainers; [ veprbl ]; }; diff --git a/pkgs/development/python-modules/dask/default.nix b/pkgs/development/python-modules/dask/default.nix index 70b15822cb655..77f702506136a 100644 --- a/pkgs/development/python-modules/dask/default.nix +++ b/pkgs/development/python-modules/dask/default.nix @@ -38,7 +38,7 @@ buildPythonPackage rec { pname = "dask"; - version = "2023.12.0"; + version = "2024.1.1"; pyproject = true; disabled = pythonOlder "3.9"; @@ -47,7 +47,7 @@ buildPythonPackage rec { owner = "dask"; repo = "dask"; rev = "refs/tags/${version}"; - hash = "sha256-LMd55s8LT4m6Ym+LmXb4TKPnZ0jMkNBfcPJxmgruMDM="; + hash = "sha256-L8bRh2bx36CYrAFXYJF67rCeCRfm5ufhTkMFRJo0yYo="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/databricks-sql-connector/default.nix b/pkgs/development/python-modules/databricks-sql-connector/default.nix index 01b565df96e9a..b0bd083085f3c 100644 --- a/pkgs/development/python-modules/databricks-sql-connector/default.nix +++ b/pkgs/development/python-modules/databricks-sql-connector/default.nix @@ -18,7 +18,7 @@ buildPythonPackage rec { pname = "databricks-sql-connector"; - version = "3.0.1"; + version = "3.0.2"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -27,7 +27,7 @@ buildPythonPackage rec { owner = "databricks"; repo = "databricks-sql-python"; rev = "refs/tags/v${version}"; - hash = "sha256-ymR/PL+LC7Bt+thtCJs5kfbJgKDgioUo+T79E7ZUQWY="; + hash = "sha256-Uvy5/a9YFdPKpZ3B+Yvrvp7uZCY/My45w1lDqX7zJvI="; }; pythonRelaxDeps = [ diff --git a/pkgs/development/python-modules/datadog/default.nix b/pkgs/development/python-modules/datadog/default.nix index 9c314e6ea09ae..1375dd7e780ac 100644 --- a/pkgs/development/python-modules/datadog/default.nix +++ b/pkgs/development/python-modules/datadog/default.nix @@ -16,14 +16,14 @@ buildPythonPackage rec { pname = "datadog"; - version = "0.47.0"; - format = "pyproject"; + version = "0.48.0"; + pyproject = true; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-R747LD1wmn9bcJ6xJu1P5sx5d9YY/lwVjdicKp99mRY="; + hash = "sha256-1NZhNYw+f4Afv+FRGPXM8Iub2bH0W4uRBgWWUoPtrWQ="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/dataprep-ml/default.nix b/pkgs/development/python-modules/dataprep-ml/default.nix index 6af89e238ccdd..00a25158bc878 100644 --- a/pkgs/development/python-modules/dataprep-ml/default.nix +++ b/pkgs/development/python-modules/dataprep-ml/default.nix @@ -1,24 +1,28 @@ { lib , buildPythonPackage +, colorlog +, dataclasses-json , fetchPypi -, pythonOlder -, poetry-core +, nltk-data , numpy , pandas +, poetry-core +, pydantic , pydateinfer , python-dateutil +, pythonOlder +, pythonRelaxDepsHook , scipy -, type-infer -, dataclasses-json -, colorlog -, pydantic -, nltk-data , symlinkJoin +, type-infer }: let testNltkData = symlinkJoin { name = "nltk-test-data"; - paths = [ nltk-data.punkt nltk-data.stopwords ]; + paths = [ + nltk-data.punkt + nltk-data.stopwords + ]; }; in buildPythonPackage rec { @@ -35,20 +39,25 @@ buildPythonPackage rec { hash = "sha256-BtnRmj5JtgNdCFowgNdpIZn5vUdw8QYCWneHfDgC4/c="; }; + pythonRelaxDeps = [ + "pydantic" + ]; + nativeBuildInputs = [ poetry-core + pythonRelaxDepsHook ]; propagatedBuildInputs = [ + colorlog + dataclasses-json numpy pandas + pydantic pydateinfer python-dateutil scipy type-infer - dataclasses-json - colorlog - pydantic ]; # PyPI tarball has no tests diff --git a/pkgs/development/python-modules/deal-solver/default.nix b/pkgs/development/python-modules/deal-solver/default.nix index 28eee72a99d23..c47d5d1c92b4c 100644 --- a/pkgs/development/python-modules/deal-solver/default.nix +++ b/pkgs/development/python-modules/deal-solver/default.nix @@ -7,6 +7,7 @@ , astroid , pytestCheckHook , hypothesis +, pythonRelaxDepsHook }: buildPythonPackage rec { @@ -25,8 +26,12 @@ buildPythonPackage rec { nativeBuildInputs = [ flit-core + pythonRelaxDepsHook ]; + # z3 does not provide a dist-info, so python-runtime-deps-check will fail + pythonRemoveDeps = [ "z3-solver" ]; + postPatch = '' substituteInPlace pyproject.toml \ --replace "\"--cov=deal_solver\"," "" \ diff --git a/pkgs/development/python-modules/deebot-client/default.nix b/pkgs/development/python-modules/deebot-client/default.nix new file mode 100644 index 0000000000000..7e394e8e27e4a --- /dev/null +++ b/pkgs/development/python-modules/deebot-client/default.nix @@ -0,0 +1,84 @@ +{ lib +, aiohttp +, aiomqtt +, buildPythonPackage +, cachetools +, defusedxml +, docker +, fetchFromGitHub +, numpy +, pillow +, pycountry +, pytest-asyncio +, pytestCheckHook +, pythonOlder +, setuptools +, setuptools-scm +, svg-py +, testfixtures +}: + +buildPythonPackage rec { + pname = "deebot-client"; + version = "5.1.0"; + pyproject = true; + + disabled = pythonOlder "3.11"; + + src = fetchFromGitHub { + owner = "DeebotUniverse"; + repo = "client.py"; + rev = "refs/tags/${version}"; + hash = "sha256-XKsS0Ty3n6rQW+f+4lLCc4i9DBqs3b6R5FEIr8L11UE="; + }; + + nativeBuildInputs = [ + setuptools + setuptools-scm + ]; + + propagatedBuildInputs = [ + aiohttp + aiomqtt + cachetools + defusedxml + numpy + pillow + svg-py + ]; + + nativeCheckInputs = [ + docker + pycountry + pytest-asyncio + pytestCheckHook + testfixtures + ]; + + pythonImportsCheck = [ + "deebot_client" + ]; + + disabledTests = [ + # Tests require running container + "test_last_message_received_at" + "test_client_bot_subscription" + "test_client_reconnect_manual" + "test_p2p_success" + "test_p2p_not_supported" + "test_p2p_data_type_not_supported" + "test_p2p_to_late" + "test_p2p_parse_error" + "test_mqtt_task_exceptions" + "test_mqtt_task_exceptions" + "test_client_reconnect_on_broker_error" + ]; + + meta = with lib; { + description = "Deebot client library"; + homepage = "https://github.com/DeebotUniverse/client.py"; + changelog = "https://github.com/DeebotUniverse/client.py/releases/tag/${version}"; + license = licenses.gpl3Only; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/demetriek/default.nix b/pkgs/development/python-modules/demetriek/default.nix index 42205ac652f9a..68f2660f6bb7b 100644 --- a/pkgs/development/python-modules/demetriek/default.nix +++ b/pkgs/development/python-modules/demetriek/default.nix @@ -1,23 +1,24 @@ { lib , aiohttp +, aresponses , awesomeversion , backoff , buildPythonPackage -, pydantic , fetchFromGitHub , fetchpatch , poetry-core -, yarl -, aresponses +, pydantic , pytest-asyncio , pytestCheckHook , pythonOlder +, pythonRelaxDepsHook +, yarl }: buildPythonPackage rec { pname = "demetriek"; version = "0.4.0"; - format = "pyproject"; + pyproject = true; disabled = pythonOlder "3.9"; @@ -45,8 +46,13 @@ buildPythonPackage rec { --replace "--cov" "" ''; + pythonRelaxDeps = [ + "pydantic" + ]; + nativeBuildInputs = [ poetry-core + pythonRelaxDepsHook ]; propagatedBuildInputs = [ @@ -72,6 +78,7 @@ buildPythonPackage rec { meta = with lib; { description = "Python client for LaMetric TIME devices"; homepage = "https://github.com/frenck/python-demetriek"; + changelog = "https://github.com/frenck/python-demetriek/releases/tag/v${version}"; license = licenses.mit; maintainers = with maintainers; [ fab ]; }; diff --git a/pkgs/development/python-modules/dep-logic/default.nix b/pkgs/development/python-modules/dep-logic/default.nix new file mode 100644 index 0000000000000..122862e8c29ea --- /dev/null +++ b/pkgs/development/python-modules/dep-logic/default.nix @@ -0,0 +1,47 @@ +{ lib +, buildPythonPackage +, pythonOlder +, fetchFromGitHub +, pdm-backend +, packaging +, pytestCheckHook +}: + +buildPythonPackage rec { + pname = "dep-logic"; + version = "0.0.4"; + pyproject = true; + + disabled = pythonOlder "3.8"; + + src = fetchFromGitHub { + owner = "pdm-project"; + repo = "dep-logic"; + rev = version; + hash = "sha256-AFiCNzHlo3BADqbjRBruA80cfM6Ytdb+gReEg5hUmro="; + }; + + nativeBuildInputs = [ + pdm-backend + ]; + + propagatedBuildInputs = [ + packaging + ]; + + nativeCheckInputs = [ + pytestCheckHook + ]; + + pythonImportsCheck = [ + "dep_logic" + ]; + + meta = { + changelog = "https://github.com/pdm-project/dep-logic/releases/tag/${src.rev}"; + description = "Python dependency specifications supporting logical operations"; + homepage = "https://github.com/pdm-project/dep-logic"; + license = lib.licenses.asl20; + maintainers = with lib.maintainers; [ tomasajt ]; + }; +} diff --git a/pkgs/development/python-modules/dict2xml/default.nix b/pkgs/development/python-modules/dict2xml/default.nix index c032eef5f4e30..62fb5caa8efbc 100644 --- a/pkgs/development/python-modules/dict2xml/default.nix +++ b/pkgs/development/python-modules/dict2xml/default.nix @@ -7,8 +7,8 @@ buildPythonPackage rec { pname = "dict2xml"; - version = "1.7.3"; - format = "pyproject"; + version = "1.7.4"; + pyproject = true; disabled = pythonOlder "3.7"; @@ -16,7 +16,7 @@ buildPythonPackage rec { owner = "delfick"; repo = "python-dict2xml"; rev = "refs/tags/release-${version}"; - hash = "sha256-0Ahc+8pb1gHvcpnYhKAJYLIaQ5Wbp7Q8clzMVcnVdYs="; + hash = "sha256-58sWvdkbt+czo96RUxB2vdOl/wqSU3BNIozSEdixWO8="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/diff-cover/default.nix b/pkgs/development/python-modules/diff-cover/default.nix index ee5e15e3da73c..b198097ebdb05 100644 --- a/pkgs/development/python-modules/diff-cover/default.nix +++ b/pkgs/development/python-modules/diff-cover/default.nix @@ -19,7 +19,7 @@ buildPythonPackage rec { pname = "diff-cover"; - version = "8.0.1"; + version = "8.0.3"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -27,7 +27,7 @@ buildPythonPackage rec { src = fetchPypi { pname = "diff_cover"; inherit version; - hash = "sha256-zDnRmety/kG83P7hZOtbWRUztMYlWA4/mprMaGkGTXw="; + hash = "sha256-OTVlyoZorh4OOOThMrUc8CgIb7Bqen2Ued61Aj4vaNQ="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/diffusers/default.nix b/pkgs/development/python-modules/diffusers/default.nix index 2d2c901a50166..2150fdabe66e4 100644 --- a/pkgs/development/python-modules/diffusers/default.nix +++ b/pkgs/development/python-modules/diffusers/default.nix @@ -39,7 +39,7 @@ buildPythonPackage rec { pname = "diffusers"; - version = "0.25.0"; + version = "0.25.1"; pyproject = true; disabled = pythonOlder "3.8"; @@ -48,7 +48,7 @@ buildPythonPackage rec { owner = "huggingface"; repo = "diffusers"; rev = "refs/tags/v${version}"; - hash = "sha256-3IwBZWSbAMaOo76rUejt4YG7PA0RMLq4LYkNB6SvK6k="; + hash = "sha256-AvD/kiwKGojsLlJ0n/U6tTu7ON8Ujl0lZd1e/fDY+CM="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/dissect-btrfs/default.nix b/pkgs/development/python-modules/dissect-btrfs/default.nix new file mode 100644 index 0000000000000..3d1bc5c20bac0 --- /dev/null +++ b/pkgs/development/python-modules/dissect-btrfs/default.nix @@ -0,0 +1,62 @@ +{ lib +, buildPythonPackage +, dissect-cstruct +, dissect-util +, fetchFromGitHub +, google-crc32c +, python-lzo +, pythonOlder +, setuptools +, setuptools-scm +, zstandard +}: + +buildPythonPackage rec { + pname = "dissect-btrfs"; + version = "1.1"; + pyproject = true; + + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "fox-it"; + repo = "dissect.btrfs"; + rev = "refs/tags/${version}"; + hash = "sha256-3k0UUkce7bZ3mZ8Umjms4DX63QeBdRPUXpsdaK0VDyc="; + }; + + nativeBuildInputs = [ + setuptools + setuptools-scm + ]; + + propagatedBuildInputs = [ + dissect-cstruct + dissect-util + ]; + + passthru.optional-dependencies = { + full = [ + python-lzo + zstandard + ]; + gcrc32 = [ + google-crc32c + ]; + }; + + # Issue with the test file handling + doCheck = false; + + pythonImportsCheck = [ + "dissect.btrfs" + ]; + + meta = with lib; { + description = "Dissect module implementing a parser for the BTRFS file system"; + homepage = "https://github.com/fox-it/dissect.btrfs"; + changelog = "https://github.com/fox-it/dissect.btrfs/releases/tag/${version}"; + license = licenses.agpl3Only; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/dissect-clfs/default.nix b/pkgs/development/python-modules/dissect-clfs/default.nix index 0f44c587c7464..03284d72cc93f 100644 --- a/pkgs/development/python-modules/dissect-clfs/default.nix +++ b/pkgs/development/python-modules/dissect-clfs/default.nix @@ -11,9 +11,9 @@ buildPythonPackage rec { pname = "dissect-clfs"; version = "1.6"; - format = "pyproject"; + pyproject = true; - disabled = pythonOlder "3.7"; + disabled = pythonOlder "3.9"; src = fetchFromGitHub { owner = "fox-it"; diff --git a/pkgs/development/python-modules/dissect-cstruct/default.nix b/pkgs/development/python-modules/dissect-cstruct/default.nix index cecc7dffef3fb..bcc86b1f7588b 100644 --- a/pkgs/development/python-modules/dissect-cstruct/default.nix +++ b/pkgs/development/python-modules/dissect-cstruct/default.nix @@ -9,16 +9,16 @@ buildPythonPackage rec { pname = "dissect-cstruct"; - version = "3.10"; - format = "pyproject"; + version = "3.12"; + pyproject = true; - disabled = pythonOlder "3.10"; + disabled = pythonOlder "3.9"; src = fetchFromGitHub { owner = "fox-it"; repo = "dissect.cstruct"; rev = "refs/tags/${version}"; - hash = "sha256-cdBojvFI0cN6mEZ98xLa3XldvIoR+Jv1c0/hvVkKVoQ="; + hash = "sha256-67s0Qr/YeQp/K9MZS+btKdp+9J6mIMCwiittIUB9p2w="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/dissect-esedb/default.nix b/pkgs/development/python-modules/dissect-esedb/default.nix index 1253b9ebb9c8b..b5ddf86dd5480 100644 --- a/pkgs/development/python-modules/dissect-esedb/default.nix +++ b/pkgs/development/python-modules/dissect-esedb/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "dissect-esedb"; - version = "3.10"; + version = "3.11"; pyproject = true; disabled = pythonOlder "3.9"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "fox-it"; repo = "dissect.esedb"; rev = "refs/tags/${version}"; - hash = "sha256-RlXnUD+KiBmntM/f7jEzdZ0Tdb8vPGvW0e3XoANaPnk="; + hash = "sha256-ynrZqP3QXe+SXFB0Uz+tdH2jGj+hpHfarbEN2P1+r/8="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/dissect-extfs/default.nix b/pkgs/development/python-modules/dissect-extfs/default.nix index 86206ee27ac14..0659372ca5cf8 100644 --- a/pkgs/development/python-modules/dissect-extfs/default.nix +++ b/pkgs/development/python-modules/dissect-extfs/default.nix @@ -11,16 +11,16 @@ buildPythonPackage rec { pname = "dissect-extfs"; - version = "3.7"; + version = "3.8"; format = "pyproject"; - disabled = pythonOlder "3.7"; + disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "fox-it"; repo = "dissect.extfs"; rev = "refs/tags/${version}"; - hash = "sha256-RsAWqtoarn/2sZU5dkQYt794dXGOr5fe68VgMNDBst4="; + hash = "sha256-yM9PTMI4/8oU2bvOCKdh5tT0gw9+6esV1auKSbupL0U="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/dissect-hypervisor/default.nix b/pkgs/development/python-modules/dissect-hypervisor/default.nix index 975526db71581..d8ccf0e0d8fb0 100644 --- a/pkgs/development/python-modules/dissect-hypervisor/default.nix +++ b/pkgs/development/python-modules/dissect-hypervisor/default.nix @@ -14,7 +14,7 @@ buildPythonPackage rec { pname = "dissect-hypervisor"; - version = "3.10"; + version = "3.11"; pyproject = true; disabled = pythonOlder "3.9"; @@ -23,7 +23,7 @@ buildPythonPackage rec { owner = "fox-it"; repo = "dissect.hypervisor"; rev = "refs/tags/${version}"; - hash = "sha256-Ml5U7yc4iqqilL6Y9qF3VU+pa0AXnYVQjVas90TpG30="; + hash = "sha256-x7C2h9NZRlkJWAe0+PCmOhOpfHM2/4vc7oEGQqGEPq8="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/dissect-jffs/default.nix b/pkgs/development/python-modules/dissect-jffs/default.nix new file mode 100644 index 0000000000000..1fdc2af6cc21d --- /dev/null +++ b/pkgs/development/python-modules/dissect-jffs/default.nix @@ -0,0 +1,49 @@ +{ lib +, buildPythonPackage +, dissect-cstruct +, dissect-util +, fetchFromGitHub +, pythonOlder +, setuptools +, setuptools-scm +}: + +buildPythonPackage rec { + pname = "dissect-jffs"; + version = "1.0"; + pyproject = true; + + disabled = pythonOlder "3.9"; + + src = fetchFromGitHub { + owner = "fox-it"; + repo = "dissect.jffs"; + rev = "refs/tags/${version}"; + hash = "sha256-Rj8/WRHNl2IQ6zwvLhqEIEMzk8BH1fv7KQkw1NzoDjI="; + }; + + nativeBuildInputs = [ + setuptools + setuptools-scm + ]; + + propagatedBuildInputs = [ + dissect-cstruct + dissect-util + ]; + + # Test file handling fails + doCheck = true; + + pythonImportsCheck = [ + "dissect.jffs" + ]; + + meta = with lib; { + description = "Dissect module implementing a parser for the JFFS2 file system"; + homepage = "https://github.com/fox-it/dissect.jffs"; + changelog = "https://github.com/fox-it/dissect.jffs/releases/tag/${version}"; + license = licenses.agpl3Only; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/dissect-ntfs/default.nix b/pkgs/development/python-modules/dissect-ntfs/default.nix index 4d69844c9884d..97ebe80f18b86 100644 --- a/pkgs/development/python-modules/dissect-ntfs/default.nix +++ b/pkgs/development/python-modules/dissect-ntfs/default.nix @@ -11,16 +11,16 @@ buildPythonPackage rec { pname = "dissect-ntfs"; - version = "3.7"; + version = "3.8"; format = "pyproject"; - disabled = pythonOlder "3.7"; + disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "fox-it"; repo = "dissect.ntfs"; rev = "refs/tags/${version}"; - hash = "sha256-bnFimn5ektIKiX73NZ+1Iz3Uoew138a0nFJgypffC4o="; + hash = "sha256-BmXYnN8B7r/gz+zEWWS7ClOv29QOiHrm7g2ZNZXlnGU="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/dissect-target/default.nix b/pkgs/development/python-modules/dissect-target/default.nix index 62f4a745156c6..786b295628745 100644 --- a/pkgs/development/python-modules/dissect-target/default.nix +++ b/pkgs/development/python-modules/dissect-target/default.nix @@ -39,7 +39,7 @@ buildPythonPackage rec { pname = "dissect-target"; - version = "3.14"; + version = "3.15"; pyproject = true; disabled = pythonOlder "3.9"; @@ -48,9 +48,14 @@ buildPythonPackage rec { owner = "fox-it"; repo = "dissect.target"; rev = "refs/tags/${version}"; - hash = "sha256-vp1upVwohMXFKxlHy5lWmigdq9MUk1UknSsPpCXt50s="; + hash = "sha256-1uWKlp0t1mVtt3lbjl4U1TMxE2YHN/GzGs8OuoVTRqc="; }; + postPatch = '' + substituteInPlace pyproject.toml \ + --replace-warn "flow.record~=" "flow.record>=" + ''; + nativeBuildInputs = [ setuptools setuptools-scm @@ -105,12 +110,13 @@ buildPythonPackage rec { # Test requires rdump "test_exec_target_command" # Issue with tar file - "test_tar_sensitive_drive_letter" "test_dpapi_decrypt_blob" - "test_notifications_appdb" "test_md" - "test_notifications_wpndatabase" "test_nested_md_lvm" + "test_notifications_appdb" + "test_notifications_wpndatabase" + "test_tar_anonymous_filesystems" + "test_tar_sensitive_drive_letter" # Tests compare dates and times "yum" # Filesystem access, windows defender tests diff --git a/pkgs/development/python-modules/dissect-util/default.nix b/pkgs/development/python-modules/dissect-util/default.nix index 495294db9c3f7..894b5e35f4e09 100644 --- a/pkgs/development/python-modules/dissect-util/default.nix +++ b/pkgs/development/python-modules/dissect-util/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "dissect-util"; - version = "3.13"; + version = "3.14"; format = "pyproject"; disabled = pythonOlder "3.9"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "fox-it"; repo = "dissect.util"; rev = "refs/tags/${version}"; - hash = "sha256-GUDYr3lP0BV7zJaaUen78CplRA7jfn1zYes7kczNGEU="; + hash = "sha256-NzqQW6OFv+CtAxa5J2X/XGS9UCFfhMp4elvgcTrA1Wg="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/dissect-volume/default.nix b/pkgs/development/python-modules/dissect-volume/default.nix index 1a2ce1e273550..77f69a83730ff 100644 --- a/pkgs/development/python-modules/dissect-volume/default.nix +++ b/pkgs/development/python-modules/dissect-volume/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "dissect-volume"; - version = "3.7"; + version = "3.8"; pyproject = true; disabled = pythonOlder "3.9"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "fox-it"; repo = "dissect.volume"; rev = "refs/tags/${version}"; - hash = "sha256-5ZO++l6BWA085U5IkghjCT46YhKc85SB7sNU2h4Fpec="; + hash = "sha256-hEfURO4ITpjSpfHMlYfzO1cG+tjvqBP5QLYzo2uz8yo="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/dissect-xfs/default.nix b/pkgs/development/python-modules/dissect-xfs/default.nix index 1f46b745edc35..af83a91ec22f7 100644 --- a/pkgs/development/python-modules/dissect-xfs/default.nix +++ b/pkgs/development/python-modules/dissect-xfs/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "dissect-xfs"; - version = "3.6"; + version = "3.7"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "fox-it"; repo = "dissect.xfs"; rev = "refs/tags/${version}"; - hash = "sha256-unrkmhLvjWWKHiqJWCEVEVcUjxWXMznjOytRbDwAxKw="; + hash = "sha256-bqpN4Ho5A9j8oLwErPErMVgkanIkdNTqcT3lkdQiw6M="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/dissect/default.nix b/pkgs/development/python-modules/dissect/default.nix index 2d15c4f5a7202..544deeace888b 100644 --- a/pkgs/development/python-modules/dissect/default.nix +++ b/pkgs/development/python-modules/dissect/default.nix @@ -1,5 +1,6 @@ { lib , buildPythonPackage +, dissect-btrfs , dissect-cim , dissect-clfs , dissect-cobaltstrike @@ -8,11 +9,12 @@ , dissect-etl , dissect-eventlog , dissect-evidence +, dissect-executable , dissect-extfs , dissect-fat , dissect-ffs -, dissect-executable , dissect-hypervisor +, dissect-jffs , dissect-ntfs , dissect-ole , dissect-regf @@ -26,14 +28,15 @@ , dissect-xfs , fetchFromGitHub , pythonOlder +, pythonRelaxDepsHook , setuptools , setuptools-scm }: buildPythonPackage rec { pname = "dissect"; - version = "3.11"; - format = "pyproject"; + version = "3.12"; + pyproject = true; disabled = pythonOlder "3.9"; @@ -41,15 +44,19 @@ buildPythonPackage rec { owner = "fox-it"; repo = "dissect"; rev = "refs/tags/${version}"; - hash = "sha256-6y+p+Ulc1Viu5s1AL/ecVtO4YRnmem/ZleY8xC4CJrU="; + hash = "sha256-hy5Yr/yR7CC7cp6pA1JP+GKazu+N4AwPqFKwb7zM+N8="; }; + pythonRelaxDeps = true; + nativeBuildInputs = [ + pythonRelaxDepsHook setuptools setuptools-scm ]; propagatedBuildInputs = [ + dissect-btrfs dissect-cim dissect-clfs dissect-cobaltstrike @@ -63,6 +70,7 @@ buildPythonPackage rec { dissect-fat dissect-ffs dissect-hypervisor + dissect-jffs dissect-ntfs dissect-ole dissect-regf diff --git a/pkgs/development/python-modules/distutils-cfg/default.nix b/pkgs/development/python-modules/distutils-cfg/default.nix index cbf12c17582a0..fb616c65d036c 100644 --- a/pkgs/development/python-modules/distutils-cfg/default.nix +++ b/pkgs/development/python-modules/distutils-cfg/default.nix @@ -24,7 +24,7 @@ in stdenv.mkDerivation { dontUnpack = true; installPhase = '' - dest="$out/lib/${python.libPrefix}/site-packages/distutils" + dest="$out/${python.sitePackages}/distutils" mkdir -p $dest ln -s ${python}/lib/${python.libPrefix}/distutils/* $dest ln -s ${distutilsCfg} $dest/distutils.cfg diff --git a/pkgs/development/python-modules/django-cleanup/default.nix b/pkgs/development/python-modules/django-cleanup/default.nix index acc94865c02be..a465ffefc6a6b 100644 --- a/pkgs/development/python-modules/django-cleanup/default.nix +++ b/pkgs/development/python-modules/django-cleanup/default.nix @@ -7,14 +7,14 @@ buildPythonPackage rec { pname = "django-cleanup"; - version = "8.0.0"; + version = "8.1.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-xzmgVUTh5I3ISIcchw2/FZX4Uz0kUjvGc2DkNWLtrw0="; + hash = "sha256-cN+QUHakTnoRGzEZgZmvYz3uCIduGZ5tzjbKjda4sQ8="; }; nativeCheckInputs = [ diff --git a/pkgs/development/python-modules/django-crispy-bootstrap5/default.nix b/pkgs/development/python-modules/django-crispy-bootstrap5/default.nix new file mode 100644 index 0000000000000..16609c82d34af --- /dev/null +++ b/pkgs/development/python-modules/django-crispy-bootstrap5/default.nix @@ -0,0 +1,42 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, django +, setuptools +, pytestCheckHook +, pytest-django +, django-crispy-forms +}: + +buildPythonPackage rec { + pname = "django-crispy-bootstrap5"; + version = "2023.10"; + format = "pyproject"; + + src = fetchFromGitHub { + owner = "django-crispy-forms"; + repo = "crispy-bootstrap5"; + rev = "refs/tags/${version}"; + hash = "sha256-AUMlLj3GmI+0vYw56Dw2+iF5s1l6GF+zV7PRD889ldg="; + }; + + propagatedBuildInputs = [ + django + setuptools + ]; + + nativeCheckInputs = [ + pytest-django + pytestCheckHook + django-crispy-forms + ]; + + pythonImportsCheck = [ "crispy_bootstrap5" ]; + + meta = with lib; { + description = "Bootstrap 5 template pack for django-crispy-forms"; + homepage = "https://github.com/django-crispy-forms/crispy-bootstrap5"; + license = licenses.mit; + maintainers = with maintainers; [ onny ]; + }; +} diff --git a/pkgs/development/python-modules/django-hijack/default.nix b/pkgs/development/python-modules/django-hijack/default.nix index a5c85a485695b..427a8e2311398 100644 --- a/pkgs/development/python-modules/django-hijack/default.nix +++ b/pkgs/development/python-modules/django-hijack/default.nix @@ -20,14 +20,14 @@ buildPythonPackage rec { pname = "django-hijack"; - version = "3.4.3"; + version = "3.4.5"; format = "setuptools"; src = fetchFromGitHub { owner = "django-hijack"; repo = "django-hijack"; rev = "refs/tags/${version}"; - hash = "sha256-D9IyuM+ZsvFZL0nhMt1VQ1DYcKg4CS8FPAgSWLtsXeE="; + hash = "sha256-FXh5OFMTjsKgjEeIS+CiOwyGOs4AisJA+g49rCILDsQ="; }; postPatch = '' @@ -40,7 +40,7 @@ buildPythonPackage rec { npmDeps = fetchNpmDeps { inherit src; - hash = "sha256-X3bJ6STFq6zGIzXHSd2C67d4kSOVJJR5aBSM3o5T850="; + hash = "sha256-cZEr/7FW4vCR8gpraT+/rPwYK9Xn22b5WH7lnuK5L4U="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/django-import-export/default.nix b/pkgs/development/python-modules/django-import-export/default.nix index d4c9940c6b045..4c901273ab020 100644 --- a/pkgs/development/python-modules/django-import-export/default.nix +++ b/pkgs/development/python-modules/django-import-export/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "django-import-export"; - version = "3.3.5"; + version = "3.3.7"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -22,7 +22,7 @@ buildPythonPackage rec { owner = "django-import-export"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-bYb000KRnvuMSMTTicqrJ+0zU/XguQFcLATqxUvc5V0="; + hash = "sha256-xcvBavXrA1XhBKYBkbaOuzG6yYkSnX2USvjg5djoXQ8="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/django-ipware/default.nix b/pkgs/development/python-modules/django-ipware/default.nix index deaf003701b03..34f17a8d7304f 100644 --- a/pkgs/development/python-modules/django-ipware/default.nix +++ b/pkgs/development/python-modules/django-ipware/default.nix @@ -7,14 +7,14 @@ buildPythonPackage rec { pname = "django-ipware"; - version = "6.0.3"; + version = "6.0.4"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-D2gt1POv73kJuz3TlpScNVmCU5vUOS1OnfCwsxYESE0="; + hash = "sha256-YU0PCpEfinZeVbbTWLFxW7he62PR67d0R9CdZF8TQ+g="; }; propagatedBuildInputs = [ django ]; diff --git a/pkgs/development/python-modules/django-mailman3/default.nix b/pkgs/development/python-modules/django-mailman3/default.nix index 74a2dd61f7cd0..026788caf646e 100644 --- a/pkgs/development/python-modules/django-mailman3/default.nix +++ b/pkgs/development/python-modules/django-mailman3/default.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, fetchpatch # propagates , django-gravatar2 @@ -13,6 +12,7 @@ , django , pytest-django , pytestCheckHook +, nixosTests }: buildPythonPackage rec { @@ -25,17 +25,6 @@ buildPythonPackage rec { hash = "sha256-uIjJaZHWL2evj+oISLprvKWT5Sm5f2EKgUD1twL1VbQ="; }; - patches = [ - (fetchpatch { - url = "https://gitlab.com/mailman/django-mailman3/-/commit/840d0d531a0813de9a30e72427e202aea21b40fe.patch"; - hash = "sha256-vltvsIP/SWpQZeXDUB+GWlTu+ghFMUqIT8i6CrYcmGo="; - }) - (fetchpatch { - url = "https://gitlab.com/mailman/django-mailman3/-/commit/25c55e31d28f2fa8eb23f0e83c12f9b0a05bfbf0.patch"; - hash = "sha256-ug5tBmnVfJTn5ufDDVg/cEtsZM59jQYJpQZV51T3qIc="; - }) - ]; - postPatch = '' substituteInPlace setup.py \ --replace 'django>=3.2,<4.2' 'django>=3.2,<4.3' @@ -58,6 +47,8 @@ buildPythonPackage rec { "django_mailman3" ]; + passthru.tests = { inherit (nixosTests) mailman; }; + meta = with lib; { description = "Django library for Mailman UIs"; homepage = "https://gitlab.com/mailman/django-mailman3"; diff --git a/pkgs/development/python-modules/django-maintenance-mode/default.nix b/pkgs/development/python-modules/django-maintenance-mode/default.nix index e6940c53b4309..6b0dbb8d3b9d8 100644 --- a/pkgs/development/python-modules/django-maintenance-mode/default.nix +++ b/pkgs/development/python-modules/django-maintenance-mode/default.nix @@ -1,33 +1,29 @@ { lib -, fetchFromGitHub -, fetchpatch , buildPythonPackage , django -, python-fsutil +, fetchFromGitHub , python +, python-fsutil , pythonOlder +, setuptools }: buildPythonPackage rec { pname = "django-maintenance-mode"; - version = "0.19.0"; - format = "setuptools"; + version = "0.21.1"; + pyproject = true; - disabled = pythonOlder "3.7"; + disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "fabiocaccamo"; - repo = pname; + repo = "django-maintenance-mode"; rev = "refs/tags/${version}"; - hash = "sha256-NAm3xMcHePTYxysihYj48bk7r9ykEtPcxPjSEju/zMM="; + hash = "sha256-rZo0yru+y5TkdULBQDMGAVb494PSLtbnNX/7cuphKNk="; }; - patches = [ - (fetchpatch { - name = "fix-broken-test.patch"; - url = "https://github.com/fabiocaccamo/django-maintenance-mode/commit/68cde8d9ceef00eeaa2068f420698c1c562fa9fc.patch"; - hash = "sha256-K/zYYkcnmWGc7Knz4l9PgvUtT0IccPRXc3UFriC1ldc="; - }) + nativeBuildInputs = [ + setuptools ]; propagatedBuildInputs = [ @@ -43,11 +39,15 @@ buildPythonPackage rec { runHook postCheck ''; + pythonImportsCheck = [ + "maintenance_mode" + ]; + meta = with lib; { description = "Shows a 503 error page when maintenance-mode is on"; homepage = "https://github.com/fabiocaccamo/django-maintenance-mode"; changelog = "https://github.com/fabiocaccamo/django-maintenance-mode/releases/tag/${version}"; - maintainers = with maintainers; [ mrmebelman ]; license = licenses.bsd3; + maintainers = with maintainers; [ mrmebelman ]; }; } diff --git a/pkgs/development/python-modules/django-ninja/default.nix b/pkgs/development/python-modules/django-ninja/default.nix index 2aa349e71bc71..a39fc17429036 100644 --- a/pkgs/development/python-modules/django-ninja/default.nix +++ b/pkgs/development/python-modules/django-ninja/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "django-ninja"; - version = "1.0.1"; + version = "1.1.0"; pyproject = true; disabled = pythonOlder "3.7"; @@ -21,8 +21,8 @@ buildPythonPackage rec { src = fetchFromGitHub { owner = "vitalik"; repo = "django-ninja"; - rev = "v${version}"; - hash = "sha256-hF6Z8i8M4mQtVPIupTSEIkJh0i/oMFFuE9PpODxq4fw="; + rev = "refs/tags/v${version}"; + hash = "sha256-pvpYDuUZi0Gr5RbBWc91LzgmRLhihrhsKaD/AWN5+Bo="; }; propagatedBuildInputs = [ django pydantic ]; diff --git a/pkgs/development/python-modules/django-q/default.nix b/pkgs/development/python-modules/django-q/default.nix index c6f9ec3bb53c1..7ce4d4b6b7d9c 100644 --- a/pkgs/development/python-modules/django-q/default.nix +++ b/pkgs/development/python-modules/django-q/default.nix @@ -16,6 +16,7 @@ , pytestCheckHook , pythonOlder , redis +, setuptools }: buildPythonPackage rec { @@ -40,6 +41,7 @@ buildPythonPackage rec { nativeBuildInputs = [ poetry-core + setuptools ]; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/django-reversion/default.nix b/pkgs/development/python-modules/django-reversion/default.nix index 7eaa9c3a71892..35d54194f07d4 100644 --- a/pkgs/development/python-modules/django-reversion/default.nix +++ b/pkgs/development/python-modules/django-reversion/default.nix @@ -8,14 +8,14 @@ buildPythonPackage rec { pname = "django-reversion"; - version = "5.0.10"; + version = "5.0.12"; pyproject = true; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-wYdJpnwdtBZ8yszDY5XF/mB48xKGloPC89IUBR5aayk="; + hash = "sha256-wEfMmanxukqubbicOsJDR41t6Y7Ipgxwc/zIddicXNs="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/django-sesame/default.nix b/pkgs/development/python-modules/django-sesame/default.nix index b0671d789510c..a8953369304a4 100644 --- a/pkgs/development/python-modules/django-sesame/default.nix +++ b/pkgs/development/python-modules/django-sesame/default.nix @@ -10,16 +10,16 @@ buildPythonPackage rec { pname = "django-sesame"; - version = "3.2.1"; - format = "pyproject"; + version = "3.2.2"; + pyproject = true; disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "aaugustin"; - repo = pname; + repo = "django-sesame"; rev = "refs/tags/${version}"; - hash = "sha256-R7ySuop7E1lkxtRSVNFfzyb3Ba1mW0o6PDiTxTztK/Y="; + hash = "sha256-8jbYhD/PfPnutJZonmdrqLIQdXiUHF12w0M9tuyyDz0="; }; nativeBuildInputs = [ @@ -46,6 +46,7 @@ buildPythonPackage rec { meta = with lib; { description = "URLs with authentication tokens for automatic login"; homepage = "https://github.com/aaugustin/django-sesame"; + changelog = "https://github.com/aaugustin/django-sesame/blob/${version}/docs/changelog.rst"; license = licenses.bsd3; maintainers = with maintainers; [ elohmeier ]; }; diff --git a/pkgs/development/python-modules/django-silk/default.nix b/pkgs/development/python-modules/django-silk/default.nix index 9f91aee935acd..5cb38385284c8 100644 --- a/pkgs/development/python-modules/django-silk/default.nix +++ b/pkgs/development/python-modules/django-silk/default.nix @@ -25,7 +25,7 @@ buildPythonPackage rec { pname = "django-silk"; - version = "5.0.3"; + version = "5.1.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -34,7 +34,7 @@ buildPythonPackage rec { owner = "jazzband"; repo = "django-silk"; rev = "refs/tags/${version}"; - hash = "sha256-91FcOqAYZK7/RCKgXjbQEPUQ2cZRFi7NzVLQF+MMDRI="; + hash = "sha256-QqY1bRa0v4DZ2/gDbssyhJA9Kb+5jig4hZEBVKZiowY="; }; # "test_time_taken" tests aren't suitable for reproducible execution, but Django's diff --git a/pkgs/development/python-modules/django-simple-captcha/default.nix b/pkgs/development/python-modules/django-simple-captcha/default.nix index d43892cb04d33..11c3e862804ad 100644 --- a/pkgs/development/python-modules/django-simple-captcha/default.nix +++ b/pkgs/development/python-modules/django-simple-captcha/default.nix @@ -12,12 +12,12 @@ buildPythonPackage rec { pname = "django-simple-captcha"; - version = "0.5.20"; + version = "0.6.0"; format = "setuptools"; src = fetchPypi { inherit pname version; - hash = "sha256-ICcwCae+tEKX6fbHpr0hraPS+pPDFNL2v145TO62opc="; + hash = "sha256-0YhRbTJvrdLVrQduuJZJ1VwCyrr+P9zCFUrBjp9tS5c="; }; nativeCheckInputs = [ diff --git a/pkgs/development/python-modules/django-two-factor-auth/default.nix b/pkgs/development/python-modules/django-two-factor-auth/default.nix index 7ca684149800d..dfb726a55b016 100644 --- a/pkgs/development/python-modules/django-two-factor-auth/default.nix +++ b/pkgs/development/python-modules/django-two-factor-auth/default.nix @@ -17,8 +17,8 @@ buildPythonPackage rec { pname = "django-two-factor-auth"; - version = "1.15.1"; - format = "setuptools"; + version = "1.15.5"; + pyproject = true; disabled = pythonOlder "3.7"; @@ -26,7 +26,7 @@ buildPythonPackage rec { owner = "jazzband"; repo = "django-two-factor-auth"; rev = "refs/tags/${version}"; - hash = "sha256-+E6kSD00ChPiRLT2i43dNlVkbvuR1vKkbSZfD1Bf3qc="; + hash = "sha256-Sr7L3ioeofyADHb1NSgs0GmVbzX7rro7yhhG9Gq6GJE="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/django-versatileimagefield/default.nix b/pkgs/development/python-modules/django-versatileimagefield/default.nix index bd0e45dee75f7..89fd6e85c954c 100644 --- a/pkgs/development/python-modules/django-versatileimagefield/default.nix +++ b/pkgs/development/python-modules/django-versatileimagefield/default.nix @@ -8,12 +8,12 @@ buildPythonPackage rec { pname = "django-versatileimagefield"; - version = "3.0"; + version = "3.1"; format = "setuptools"; src = fetchPypi { inherit pname version; - hash = "sha256-FlHbLtNthDz7F4jyYBRyopPZuoZyk2m29uVZERI1esc="; + hash = "sha256-M5DiAEgJjol78pmwNgdj0QzQiWZbeu+OupAO7Lrq0Ng="; }; propagatedBuildInputs = [ pillow python-magic ]; diff --git a/pkgs/development/python-modules/django-vite/default.nix b/pkgs/development/python-modules/django-vite/default.nix index 5f4ee952e2f15..607d0b6e818f8 100644 --- a/pkgs/development/python-modules/django-vite/default.nix +++ b/pkgs/development/python-modules/django-vite/default.nix @@ -7,7 +7,7 @@ buildPythonPackage rec { pname = "django-vite"; - version = "3.0.2"; + version = "3.0.3"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -16,7 +16,7 @@ buildPythonPackage rec { owner = "MrBin99"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-Lnecxkn+E1Bce/EhP1AHH9/VrdzBiMGLv+eYld5+QKM="; + hash = "sha256-FH42auBm/YRfGgjL9TGQLed/p0P8POb7DOLmpUK1d9c="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/django-webpack-loader/default.nix b/pkgs/development/python-modules/django-webpack-loader/default.nix index 3f1aa0138b908..3850c7cbd8915 100644 --- a/pkgs/development/python-modules/django-webpack-loader/default.nix +++ b/pkgs/development/python-modules/django-webpack-loader/default.nix @@ -7,14 +7,14 @@ buildPythonPackage rec { pname = "django-webpack-loader"; - version = "3.0.0"; + version = "3.0.1"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-dND6btp4i4Sxq4KMLn786EFLBe7wpOsr8n0xGlDgpO0="; + hash = "sha256-UTMbM9p2aI60078+o7tWQ0sMHfstzYjL+wo5YY9o3Xo="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/django/4.nix b/pkgs/development/python-modules/django/4.nix index 47c079328a175..66ea0f5c1cf80 100644 --- a/pkgs/development/python-modules/django/4.nix +++ b/pkgs/development/python-modules/django/4.nix @@ -45,7 +45,7 @@ buildPythonPackage rec { version = "4.2.9"; format = "pyproject"; - disabled = pythonOlder "3.10"; + disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; diff --git a/pkgs/development/python-modules/dlms-cosem/default.nix b/pkgs/development/python-modules/dlms-cosem/default.nix index d106d12955957..a285a538fa08f 100644 --- a/pkgs/development/python-modules/dlms-cosem/default.nix +++ b/pkgs/development/python-modules/dlms-cosem/default.nix @@ -8,29 +8,36 @@ , pytestCheckHook , python-dateutil , pythonOlder +, setuptools +, structlog , typing-extensions }: buildPythonPackage rec { pname = "dlms-cosem"; - version = "21.3.2"; - format = "setuptools"; + version = "24.1.0"; + pyproject = true; disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "pwitab"; - repo = pname; + repo = "dlms-cosem"; rev = "refs/tags/${version}"; - hash = "sha256-BrLanP+SIRRof15yzqwcDOxw92phbW7m9CfORz0xo7I="; + hash = "sha256-NeTaU8i18Zb39Y2JnYzr87Ozt7Rj074xusL4xaNe0q0="; }; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ asn1crypto attrs cryptography pyserial python-dateutil + structlog typing-extensions ]; @@ -45,6 +52,7 @@ buildPythonPackage rec { meta = with lib; { description = "Python module to parse DLMS/COSEM"; homepage = "https://github.com/pwitab/dlms-cosem"; + changelog = "https://github.com/pwitab/dlms-cosem/blob/${version}/HISTORY.md"; license = with licenses; [ mit ]; maintainers = with maintainers; [ fab ]; }; diff --git a/pkgs/development/python-modules/dogpile-cache/default.nix b/pkgs/development/python-modules/dogpile-cache/default.nix index 069d08f4d551f..d05c47009f77a 100644 --- a/pkgs/development/python-modules/dogpile-cache/default.nix +++ b/pkgs/development/python-modules/dogpile-cache/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "dogpile-cache"; - version = "1.2.2"; + version = "1.3.0"; format = "pyproject"; disabled = pythonOlder "3.6"; @@ -20,7 +20,7 @@ buildPythonPackage rec { src = fetchPypi { pname = "dogpile.cache"; inherit version; - hash = "sha256-/ZAiwNnLra3yCUI5GpWtrylr6AtC2qjiAvjeHCHxmLI="; + hash = "sha256-Cjh/GTLAce6P2XHS/1H4q6EQbFWUOaUbjHSiB/QOIV0="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/dparse/default.nix b/pkgs/development/python-modules/dparse/default.nix index 3c8b56a2c4065..44649dd0e991a 100644 --- a/pkgs/development/python-modules/dparse/default.nix +++ b/pkgs/development/python-modules/dparse/default.nix @@ -1,17 +1,19 @@ { lib , buildPythonPackage -, fetchPypi , pythonOlder -, toml -, pyyaml +, fetchPypi +, fetchpatch2 +, setuptools , packaging +, tomli +, pyyaml , pytestCheckHook }: buildPythonPackage rec { pname = "dparse"; version = "0.6.3"; - format = "setuptools"; + pyproject = true; disabled = pythonOlder "3.6"; @@ -20,15 +22,32 @@ buildPythonPackage rec { hash = "sha256-J7uLS8rv7DmXaXuj9uBrJEcgC6JzwLCFw9ASoEVxtSg="; }; + patches = [ + (fetchpatch2 { + name = "fix-configparser-deprecation-warning.patch"; + url = "https://github.com/pyupio/dparse/pull/69.patch"; + hash = "sha256-RolD6xDJpI8/UHgAdcsXoyxOGLok7AogLMOTl1ZPKvw="; + }) + ]; + + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ - toml - pyyaml packaging + ] ++ lib.optionals (pythonOlder "3.11") [ + tomli ]; + passthru.optional-dependencies = { + # FIXME pipenv = [ pipenv ]; + conda = [ pyyaml ]; + }; + nativeCheckInputs = [ pytestCheckHook - ]; + ] ++ lib.flatten (lib.attrValues passthru.optional-dependencies); pythonImportsCheck = [ "dparse" diff --git a/pkgs/development/python-modules/dploot/default.nix b/pkgs/development/python-modules/dploot/default.nix new file mode 100644 index 0000000000000..6b6dc6454cb61 --- /dev/null +++ b/pkgs/development/python-modules/dploot/default.nix @@ -0,0 +1,48 @@ +{ lib +, buildPythonPackage +, poetry-core +, pythonRelaxDepsHook +, fetchPypi +, impacket +, cryptography +, pyasn1 +, lxml +}: + +buildPythonPackage rec { + pname = "dploot"; + version = "2.2.4"; + pyproject = true; + + src = fetchPypi { + inherit pname version; + hash = "sha256-40/5KOlEFvPL9ohCfR3kqoikpKFfJO22MToq3GhamKM="; + }; + + pythonRelaxDeps = true; + + nativeBuildInputs = [ + poetry-core + pythonRelaxDepsHook + ]; + + propagatedBuildInputs = [ + impacket + cryptography + pyasn1 + lxml + ]; + + pythonImportsCheck = [ "dploot" ]; + + # No tests + doCheck = false; + + meta = { + homepage = "https://github.com/zblurx/dploot"; + description = "DPAPI looting remotely in Python"; + changelog = "https://github.com/zblurx/dploot/releases/tag/${version}"; + license = lib.licenses.mit; + maintainers = with lib.maintainers; [ vncsb ]; + }; +} diff --git a/pkgs/development/python-modules/dramatiq/default.nix b/pkgs/development/python-modules/dramatiq/default.nix index 84da4beadd794..35c2b79c438dd 100644 --- a/pkgs/development/python-modules/dramatiq/default.nix +++ b/pkgs/development/python-modules/dramatiq/default.nix @@ -15,7 +15,7 @@ buildPythonPackage rec { pname = "dramatiq"; - version = "1.15.0"; + version = "1.16.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -24,7 +24,7 @@ buildPythonPackage rec { owner = "Bogdanp"; repo = "dramatiq"; rev = "refs/tags/v${version}"; - hash = "sha256-uhradhLIyfHf1meAr7ChuGnvm62mX/lkQQ2Pe7hBWtY="; + hash = "sha256-gC1vWnG3zDuFT61i2VgDrP/qIwmGN5GkGv6EVxqUf4U="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/dsnap/default.nix b/pkgs/development/python-modules/dsnap/default.nix index 0525f4d861198..c93793018c4fc 100644 --- a/pkgs/development/python-modules/dsnap/default.nix +++ b/pkgs/development/python-modules/dsnap/default.nix @@ -17,7 +17,7 @@ buildPythonPackage rec { pname = "dsnap"; version = "1.0.0"; - format = "pyproject"; + pyproject = true; disabled = pythonOlder "3.7"; @@ -28,6 +28,12 @@ buildPythonPackage rec { hash = "sha256-yKch+tKjFhvZfzloazMH378dkERF8gnZEX1Som+d670="; }; + postPatch = '' + # Is no direct dependency + substituteInPlace pyproject.toml \ + --replace 'urllib3 = "^1.26.4"' 'urllib3 = "*"' + ''; + nativeBuildInputs = [ poetry-core ]; diff --git a/pkgs/development/python-modules/ducc0/default.nix b/pkgs/development/python-modules/ducc0/default.nix index eee41de63bd4e..f655aebf8910c 100644 --- a/pkgs/development/python-modules/ducc0/default.nix +++ b/pkgs/development/python-modules/ducc0/default.nix @@ -2,7 +2,7 @@ buildPythonPackage rec { pname = "ducc0"; - version = "0.32.0"; + version = "0.33.0"; format = "setuptools"; disabled = pythonOlder "3.8"; @@ -12,7 +12,7 @@ buildPythonPackage rec { owner = "mtr"; repo = "ducc"; rev = "ducc0_${lib.replaceStrings ["."] ["_"] version}"; - hash = "sha256-D+Gt5RrzljZQHBijaPuCuNsK08VxxJoWhqxSDu4bjH0="; + hash = "sha256-MezcqQRitBkK4/1rRQM2c9w+iZb2kIsDdcNd6I8CPoI="; }; buildInputs = [ pybind11 ]; diff --git a/pkgs/development/python-modules/dulwich/default.nix b/pkgs/development/python-modules/dulwich/default.nix index 3dfb70f888328..97b27d14bd352 100644 --- a/pkgs/development/python-modules/dulwich/default.nix +++ b/pkgs/development/python-modules/dulwich/default.nix @@ -11,6 +11,7 @@ , gnupg , gpgme , paramiko +, pytest-xdist , pytestCheckHook , pythonOlder , urllib3 @@ -53,6 +54,7 @@ buildPythonPackage rec { geventhttpclient git glibcLocales + pytest-xdist pytestCheckHook ] ++ passthru.optional-dependencies.fastimport ++ passthru.optional-dependencies.pgp @@ -72,6 +74,8 @@ buildPythonPackage rec { disabledTestPaths = [ # missing test inputs "dulwich/contrib/test_swift_smoke.py" + # flaky on high core count >4 + "dulwich/tests/compat/test_client.py" ]; pythonImportsCheck = [ @@ -85,7 +89,7 @@ buildPythonPackage rec { does not depend on Git itself. All functionality is available in pure Python. ''; homepage = "https://www.dulwich.io/"; - changelog = "https://github.com/dulwich/dulwich/blob/dulwich-${version}/NEWS"; + changelog = "https://github.com/jelmer/dulwich/blob/dulwich-${version}/NEWS"; license = with licenses; [ asl20 gpl2Plus ]; maintainers = with maintainers; [ koral ]; }; diff --git a/pkgs/development/python-modules/dvc-data/default.nix b/pkgs/development/python-modules/dvc-data/default.nix index c7b41c27823a9..86f8cf2483e55 100644 --- a/pkgs/development/python-modules/dvc-data/default.nix +++ b/pkgs/development/python-modules/dvc-data/default.nix @@ -14,7 +14,7 @@ buildPythonPackage rec { pname = "dvc-data"; - version = "3.7.0"; + version = "3.9.0"; pyproject = true; disabled = pythonOlder "3.8"; @@ -23,7 +23,7 @@ buildPythonPackage rec { owner = "iterative"; repo = "dvc-data"; rev = "refs/tags/${version}"; - hash = "sha256-ycC6NWvU00yUEHu62H5VLKDEZEHyIo4+TBwj5XaswII="; + hash = "sha256-rgqSgNsqAGATzu3ZX8LWRiFJt0xTTLaF8bUNOgA3s2w="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/dvc-gdrive/default.nix b/pkgs/development/python-modules/dvc-gdrive/default.nix new file mode 100644 index 0000000000000..e7b2b0d7c499c --- /dev/null +++ b/pkgs/development/python-modules/dvc-gdrive/default.nix @@ -0,0 +1,49 @@ +{ lib +, buildPythonPackage +, dvc +, fetchFromGitHub +, pydrive2 +, pythonOlder +, setuptools +, setuptools-scm +}: + +buildPythonPackage rec { + pname = "dvc-gdrive"; + version = "3.0.1"; + pyproject = true; + + disabled = pythonOlder "3.8"; + + src = fetchFromGitHub { + owner = "iterative"; + repo = "dvc-gdrive"; + rev = "refs/tags/${version}"; + hash = "sha256-oqHSMmwfR24ydJlpXGI3cCxIlF0BwNdgje5zKa0c7FA="; + }; + + nativeBuildInputs = [ + setuptools + setuptools-scm + ]; + + propagatedBuildInputs = [ + dvc + pydrive2 + ]; + + # Circular dependency with dvc + doCheck = false; + + pythonImportsCheck = [ + "dvc_gdrive" + ]; + + meta = with lib; { + description = "Google Drive plugin for DVC"; + homepage = "https://github.com/iterative/dvc-gdrive"; + changelog = "https://github.com/iterative/dvc-gdrive/releases/tag/${version}"; + license = licenses.asl20; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/dvc-hdfs/default.nix b/pkgs/development/python-modules/dvc-hdfs/default.nix new file mode 100644 index 0000000000000..b532941e42ba5 --- /dev/null +++ b/pkgs/development/python-modules/dvc-hdfs/default.nix @@ -0,0 +1,49 @@ +{ lib +, buildPythonPackage +, dvc +, fetchFromGitHub +, fsspec +, pythonOlder +, setuptools +, setuptools-scm +}: + +buildPythonPackage rec { + pname = "dvc-hdfs"; + version = "3.0.0"; + pyproject = true; + + disabled = pythonOlder "3.8"; + + src = fetchFromGitHub { + owner = "iterative"; + repo = "dvc-hdfs"; + rev = "refs/tags/${version}"; + hash = "sha256-Bo8+El5GC7iyT8SxaJquWFG29BOeilmEMDtTG+RkDGI="; + }; + + nativeBuildInputs = [ + setuptools + setuptools-scm + ]; + + propagatedBuildInputs = [ + dvc + fsspec + ] ++ fsspec.optional-dependencies.arrow; + + # Circular dependency with dvc + doCheck = false; + + pythonImportsCheck = [ + "dvc_hdfs" + ]; + + meta = with lib; { + description = "HDFS/WebHDFS plugin for dvc"; + homepage = "https://github.com/iterative/dvc-hdfs"; + changelog = "https://github.com/iterative/dvc-hdfs/releases/tag/${version}"; + license = licenses.asl20; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/dvc-objects/default.nix b/pkgs/development/python-modules/dvc-objects/default.nix index 34848b020c630..778bcf39fa27d 100644 --- a/pkgs/development/python-modules/dvc-objects/default.nix +++ b/pkgs/development/python-modules/dvc-objects/default.nix @@ -14,7 +14,7 @@ buildPythonPackage rec { pname = "dvc-objects"; - version = "3.0.3"; + version = "3.0.6"; pyproject = true; disabled = pythonOlder "3.8"; @@ -23,7 +23,7 @@ buildPythonPackage rec { owner = "iterative"; repo = "dvc-objects"; rev = "refs/tags/${version}"; - hash = "sha256-JQ3UDUOpuxPavXkoJqbS0T7y3kpwuJ8NvqAl3DahoLU="; + hash = "sha256-os4MzxB4IuqJ9EsKZXGzOU23Qf6LLLiV6SLaNpMlEp8="; }; postPatch = '' diff --git a/pkgs/development/python-modules/dvc-render/default.nix b/pkgs/development/python-modules/dvc-render/default.nix index a4527cd1b6c58..fc0a13004970a 100644 --- a/pkgs/development/python-modules/dvc-render/default.nix +++ b/pkgs/development/python-modules/dvc-render/default.nix @@ -15,16 +15,16 @@ buildPythonPackage rec { pname = "dvc-render"; - version = "1.0.0"; - format = "pyproject"; + version = "1.0.1"; + pyproject = true; - disabled = pythonOlder "3.7"; + disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "iterative"; - repo = pname; + repo = "dvc-render"; rev = "refs/tags/${version}"; - hash = "sha256-OrfepQuLBNa5m3Sy4NzFOArtFFvaNtNNVJ8DNN3yT6s="; + hash = "sha256-7rmmhf6Y6teoHR8u1+Ce1Xq0rdtC1/MWLXb282OOEnc="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/dvc/default.nix b/pkgs/development/python-modules/dvc/default.nix index a0ec57df359f3..c469ffcb9754c 100644 --- a/pkgs/development/python-modules/dvc/default.nix +++ b/pkgs/development/python-modules/dvc/default.nix @@ -1,24 +1,22 @@ { lib -, buildPythonPackage -, fetchFromGitHub -, fetchpatch -, pythonOlder -, pythonRelaxDepsHook -, setuptools-scm , appdirs +, buildPythonPackage , colorama , configobj , distro , dpath , dvc-azure , dvc-data +, dvc-gdrive , dvc-gs +, dvc-hdfs , dvc-http , dvc-render , dvc-s3 , dvc-ssh , dvc-studio-client , dvc-task +, fetchFromGitHub , flatten-dict , flufl_lock , funcy @@ -36,10 +34,13 @@ , pydot , pygtrie , pyparsing +, pythonOlder +, pythonRelaxDepsHook , requests , rich , ruamel-yaml , scmrepo +, setuptools-scm , shortuuid , shtab , tabulate @@ -56,14 +57,16 @@ buildPythonPackage rec { pname = "dvc"; - version = "3.39.0"; + version = "3.43.1"; pyproject = true; + disabled = pythonOlder "3.8"; + src = fetchFromGitHub { owner = "iterative"; repo = "dvc"; rev = "refs/tags/${version}"; - hash = "sha256-sFrbG9CKt8PaW9qdXBxEa516lnRWzFdTEbdCW6VFUuQ="; + hash = "sha256-9JS8N4BWikmXoo5TtpUD5El2vHST80NEOBdxkHfK4ME="; }; pythonRelaxDeps = [ @@ -72,7 +75,8 @@ buildPythonPackage rec { ]; postPatch = '' - substituteInPlace dvc/analytics.py --replace 'enabled = not os.getenv(DVC_NO_ANALYTICS)' 'enabled = False' + substituteInPlace dvc/analytics.py \ + --replace 'enabled = not os.getenv(DVC_NO_ANALYTICS)' 'enabled = False' substituteInPlace dvc/daemon.py \ --subst-var-by dvc "$out/bin/dcv" ''; @@ -135,9 +139,15 @@ buildPythonPackage rec { azure = [ dvc-azure ]; + gdrive = [ + dvc-gdrive + ]; gs = [ dvc-gs ]; + hdfs = [ + dvc-hdfs + ]; s3 = [ dvc-s3 ]; diff --git a/pkgs/development/python-modules/dvclive/default.nix b/pkgs/development/python-modules/dvclive/default.nix index 67f70fffb3e0d..f657ab37083c2 100644 --- a/pkgs/development/python-modules/dvclive/default.nix +++ b/pkgs/development/python-modules/dvclive/default.nix @@ -1,21 +1,39 @@ { lib , buildPythonPackage +, datasets , dvc +, dvc-render , dvc-studio-client +, fastai , fetchFromGitHub , funcy +, gto +, jsonargparse +, lightgbm +, lightning +, matplotlib +, mmcv +, numpy +, optuna +, pandas +, pillow , pytestCheckHook , pythonOlder , ruamel-yaml +, scikit-learn , scmrepo , setuptools-scm , tabulate +, tensorflow +, torch +, transformers +, xgboost }: buildPythonPackage rec { pname = "dvclive"; - version = "3.5.1"; - format = "pyproject"; + version = "3.41.1"; + pyproject = true; disabled = pythonOlder "3.8"; @@ -23,7 +41,7 @@ buildPythonPackage rec { owner = "iterative"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-QsA8HZ6wIWKvtQ+f3nyRKKZRNJS56eZ1sKw+KNHxfXc="; + hash = "sha256-PbgazRK3+CoJISh1ZXGjxDfbKHY/XqSvVrkpycvPi7c="; }; nativeBuildInputs = [ @@ -32,12 +50,78 @@ buildPythonPackage rec { propagatedBuildInputs = [ dvc + dvc-render dvc-studio-client funcy + gto ruamel-yaml scmrepo ]; + passthru.optional-dependencies = { + all = [ + jsonargparse + lightgbm + lightning + matplotlib + mmcv + numpy + optuna + pandas + pillow + scikit-learn + tensorflow + torch + transformers + xgboost + ] ++ jsonargparse.optional-dependencies.signatures; + image = [ + numpy + pillow + ]; + sklearn = [ + scikit-learn + ]; + plots = [ + pandas + scikit-learn + numpy + ]; + markdown = [ + matplotlib + ]; + mmcv = [ + mmcv + ]; + tf = [ + tensorflow + ]; + xgb = [ + xgboost + ]; + lgbm = [ + lightgbm + ]; + huggingface = [ + datasets + transformers + ]; + # catalyst = [ + # catalyst + # ]; + fastai = [ + fastai + ]; + lightning = [ + lightning + torch + jsonargparse + ] ++ jsonargparse.optional-dependencies.signatures; + optuna = [ + optuna + ]; + }; + # Circular dependency with dvc doCheck = false; diff --git a/pkgs/development/python-modules/dynalite-devices/default.nix b/pkgs/development/python-modules/dynalite-devices/default.nix index b057158b731a2..e07190f981045 100644 --- a/pkgs/development/python-modules/dynalite-devices/default.nix +++ b/pkgs/development/python-modules/dynalite-devices/default.nix @@ -43,7 +43,7 @@ buildPythonPackage rec { ]; # it would use the erroneous tag v0.47 - passthru.skipBulkUpdate = false; + passthru.skipBulkUpdate = true; meta = with lib; { description = "An unofficial Dynalite DyNET interface creating devices"; diff --git a/pkgs/development/python-modules/ed25519-blake2b/default.nix b/pkgs/development/python-modules/ed25519-blake2b/default.nix index 2fca4287a348b..2783662ad2cfd 100644 --- a/pkgs/development/python-modules/ed25519-blake2b/default.nix +++ b/pkgs/development/python-modules/ed25519-blake2b/default.nix @@ -1,20 +1,26 @@ { lib +, buildPythonPackage , fetchPypi , pythonOlder -, buildPythonPackage }: +, setuptools +}: buildPythonPackage rec { pname = "ed25519-blake2b"; - version = "1.4"; - format = "setuptools"; + version = "1.4.1"; + pyproject = true; - disabled = pythonOlder "3.6"; + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-0aHLkDLsMHzpW0HGGUQP1NP87MGPIkA1zH1tx6fY70A="; + hash = "sha256-cx6fk80awaZGSVdfNRmpn/4LseTPe/X18L5ROjnfc2M="; }; + nativeBuildInputs = [ + setuptools + ]; + pythonImportsCheck = [ "ed25519_blake2b" ]; @@ -22,6 +28,7 @@ buildPythonPackage rec { meta = with lib; { description = "Ed25519 public-key signatures (BLAKE2b fork)"; homepage = "https://github.com/Matoking/python-ed25519-blake2b"; + changelog = "https://github.com/Matoking/python-ed25519-blake2b/releases/tag/${version}"; license = licenses.mit; maintainers = with maintainers; [ onny stargate01 ]; }; diff --git a/pkgs/development/python-modules/edk2-pytool-library/default.nix b/pkgs/development/python-modules/edk2-pytool-library/default.nix index a42b0cced7cfd..2f4442161f559 100644 --- a/pkgs/development/python-modules/edk2-pytool-library/default.nix +++ b/pkgs/development/python-modules/edk2-pytool-library/default.nix @@ -10,12 +10,13 @@ , cryptography , joblib , gitpython +, sqlalchemy , pytestCheckHook }: buildPythonPackage rec { pname = "edk2-pytool-library"; - version = "0.19.9"; + version = "0.20.0"; pyproject = true; disabled = pythonOlder "3.10"; @@ -24,7 +25,7 @@ buildPythonPackage rec { owner = "tianocore"; repo = "edk2-pytool-library"; rev = "refs/tags/v${version}"; - hash = "sha256-eQcto4pd+y9fCjuiaSezA3okfW+xrR01Kc/N2tQdf5A="; + hash = "sha256-uqXQbSk/diyTq4d+J1ubc6ylJpETmJt699vfbSuY290="; }; nativeBuildInputs = [ @@ -44,6 +45,7 @@ buildPythonPackage rec { cryptography joblib gitpython + sqlalchemy ]; nativeCheckInputs = [ diff --git a/pkgs/development/python-modules/eigenpy/default.nix b/pkgs/development/python-modules/eigenpy/default.nix index 93ec1fc59b50f..d3edf67483000 100644 --- a/pkgs/development/python-modules/eigenpy/default.nix +++ b/pkgs/development/python-modules/eigenpy/default.nix @@ -9,14 +9,14 @@ stdenv.mkDerivation (finalAttrs: { pname = "eigenpy"; - version = "3.2.0"; + version = "3.3.0"; src = fetchFromGitHub { owner = "stack-of-tasks"; repo = finalAttrs.pname; rev = "v${finalAttrs.version}"; fetchSubmodules = true; - hash = "sha256-ApWz0La+weqczVj3EyBqTAFlTt8cylA3Dl0ZDP4/i5o="; + hash = "sha256-INOg1oL5APMI2YZDe4yOJadhMsG7b+NfEcSr9FsdqeU="; }; strictDeps = true; diff --git a/pkgs/development/python-modules/elasticsearch-dsl/default.nix b/pkgs/development/python-modules/elasticsearch-dsl/default.nix index dfee78a41408b..263786e3e404b 100644 --- a/pkgs/development/python-modules/elasticsearch-dsl/default.nix +++ b/pkgs/development/python-modules/elasticsearch-dsl/default.nix @@ -8,12 +8,12 @@ buildPythonPackage rec { pname = "elasticsearch-dsl"; - version = "8.11.0"; + version = "8.12.0"; format = "setuptools"; src = fetchPypi { inherit pname version; - sha256 = "sha256-RK9P1/YgCbsZGTtV4cIUO2kyUX5MDsMBB+f/TZaKEn4="; + sha256 = "sha256-zjK4UpiIqXvpEVMedZCBbPOx9ggmPv9vt1qnEG4jPIg="; }; propagatedBuildInputs = [ elasticsearch python-dateutil six ]; diff --git a/pkgs/development/python-modules/elasticsearch8/default.nix b/pkgs/development/python-modules/elasticsearch8/default.nix index 23187eb603e99..84376cdbdb19d 100644 --- a/pkgs/development/python-modules/elasticsearch8/default.nix +++ b/pkgs/development/python-modules/elasticsearch8/default.nix @@ -10,14 +10,14 @@ buildPythonPackage rec { pname = "elasticsearch8"; - version = "8.11.1"; + version = "8.12.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-nY+qZ94uVBLMPb0i0k7gEUfcR5lsE6lcbtFtGQkTKeo="; + hash = "sha256-YFsrdsAAelOest7Pw3+Zl3lV+Q/e7YMELmL3TodBKSM="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/embedding-reader/default.nix b/pkgs/development/python-modules/embedding-reader/default.nix index 739cad1e17146..9a1a8a0b1dfc6 100644 --- a/pkgs/development/python-modules/embedding-reader/default.nix +++ b/pkgs/development/python-modules/embedding-reader/default.nix @@ -11,14 +11,14 @@ buildPythonPackage rec { pname = "embedding-reader"; - version = "1.6.1"; + version = "1.7.0"; format = "setuptools"; src = fetchFromGitHub { owner = "rom1504"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-51UQOqXZcI1VBQ1k6omMStI7GZXNDQ6/e3ThafpP61U="; + hash = "sha256-paN6rAyH3L7qCfWPr5kXo9Xl57gRMhdcDnoyLJ7II2w="; }; nativeBuildInputs = [ pythonRelaxDepsHook ]; diff --git a/pkgs/development/python-modules/emoji/default.nix b/pkgs/development/python-modules/emoji/default.nix index 3820b7a8eaf74..f2c036f7be024 100644 --- a/pkgs/development/python-modules/emoji/default.nix +++ b/pkgs/development/python-modules/emoji/default.nix @@ -7,7 +7,7 @@ buildPythonPackage rec { pname = "emoji"; - version = "2.8.0"; + version = "2.10.1"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -16,7 +16,7 @@ buildPythonPackage rec { owner = "carpedm20"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-fnVY4KwiqvSVYijlDckLq6qDrBJj/rJGMwaQ1mMygek="; + hash = "sha256-cCYZ+0IFHIR9++RfUbFTRMKYB9nC5dBaPMH6dSiAXK0="; }; nativeCheckInputs = [ diff --git a/pkgs/development/python-modules/environs/default.nix b/pkgs/development/python-modules/environs/default.nix index 529c940dd45c3..8c179349e18eb 100644 --- a/pkgs/development/python-modules/environs/default.nix +++ b/pkgs/development/python-modules/environs/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "environs"; - version = "10.1.0"; + version = "10.3.0"; pyproject = true; disabled = pythonOlder "3.8"; @@ -22,7 +22,7 @@ buildPythonPackage rec { owner = "sloria"; repo = "environs"; rev = "refs/tags/${version}"; - hash = "sha256-G9dgOugmFRHSLlmVHs2H5XyF3UKghAGtuzTWn4IB4dI="; + hash = "sha256-D6Kp8aHiUls7+cACJ3DwrS4OftA5uMbAu4l5IyR4F5U="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/es-client/default.nix b/pkgs/development/python-modules/es-client/default.nix index 7c72732f7499b..c75e0ed25dee3 100644 --- a/pkgs/development/python-modules/es-client/default.nix +++ b/pkgs/development/python-modules/es-client/default.nix @@ -2,6 +2,7 @@ , buildPythonPackage , certifi , click +, ecs-logging , elastic-transport , elasticsearch8 , fetchFromGitHub @@ -19,8 +20,8 @@ buildPythonPackage rec { pname = "es-client"; - version = "8.11.0"; - format = "pyproject"; + version = "8.12.4"; + pyproject = true; disabled = pythonOlder "3.7"; @@ -28,7 +29,7 @@ buildPythonPackage rec { owner = "untergeek"; repo = "es_client"; rev = "refs/tags/v${version}"; - hash = "sha256-VsHpWe37/CZvGm3PqVq4mJCBA9juvOD9FLmDeW8OjiM="; + hash = "sha256-IjpnukZRDpflk/lh9aSyeuoj/bzZD0jiS1prBKkZwLk="; }; pythonRelaxDeps = true; @@ -41,6 +42,7 @@ buildPythonPackage rec { propagatedBuildInputs = [ certifi click + ecs-logging elastic-transport elasticsearch8 pyyaml @@ -62,7 +64,11 @@ buildPythonPackage rec { disabledTests = [ # Tests require network access "test_bad_version_raises" + "test_basic_operation" + "test_basic_operation" "test_client_info" + "test_logging_options_ecs" + "test_logging_options_json" "test_multiple_hosts_raises" "test_non_dict_passed" "test_skip_version_check" diff --git a/pkgs/development/python-modules/exchangelib/default.nix b/pkgs/development/python-modules/exchangelib/default.nix index b7d4cda7df7c1..9b4078ba47f68 100644 --- a/pkgs/development/python-modules/exchangelib/default.nix +++ b/pkgs/development/python-modules/exchangelib/default.nix @@ -17,7 +17,7 @@ , pytz , pyyaml , requests -, requests_ntlm +, requests-ntlm , requests-oauthlib , requests-kerberos , requests-mock @@ -57,7 +57,7 @@ buildPythonPackage rec { oauthlib pygments requests - requests_ntlm + requests-ntlm requests-oauthlib requests-kerberos tzdata diff --git a/pkgs/development/python-modules/extruct/default.nix b/pkgs/development/python-modules/extruct/default.nix index c2156965d08b8..64873c94d3244 100644 --- a/pkgs/development/python-modules/extruct/default.nix +++ b/pkgs/development/python-modules/extruct/default.nix @@ -1,38 +1,37 @@ { lib , buildPythonPackage , fetchFromGitHub -, pythonRelaxDepsHook , html-text , jstyleson , lxml , mf2py +, mock , pyrdfa3 +, pytestCheckHook +, pythonOlder +, pythonRelaxDepsHook , rdflib +, setuptools , six , w3lib -, pytestCheckHook -, mock }: buildPythonPackage rec { pname = "extruct"; - version = "0.13.0"; - format = "setuptools"; + version = "0.16.0"; + pyproject = true; + + disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "scrapinghub"; repo = "extruct"; - rev = "v${version}"; - hash = "sha256-hf6b/tZLggHzgFmZ6aldZIBd17Ni7vCTIIzhNlyjvxw="; + rev = "refs/tags/v${version}"; + hash = "sha256-6lAb17EoR0FKyIOb9hk1jcpmPtZ7vClfuCrDZ83XBeg="; }; nativeBuildInputs = [ - pythonRelaxDepsHook - ]; - - # rdflib-jsonld functionality is part of rdblib from version 6 onwards - pythonRemoveDeps = [ - "rdflib-jsonld" + setuptools ]; propagatedBuildInputs = [ @@ -51,11 +50,20 @@ buildPythonPackage rec { pytestCheckHook ]; - pythonImportsCheck = [ "extruct" ]; + pythonImportsCheck = [ + "extruct" + ]; + + disabledTests = [ + # AssertionError: Lists differ + "test_microformat" + "test_umicroformat" + ]; meta = with lib; { description = "Extract embedded metadata from HTML markup"; homepage = "https://github.com/scrapinghub/extruct"; + changelog = "https://github.com/scrapinghub/extruct/blob/v${version}/HISTORY.rst"; license = licenses.bsd3; maintainers = with maintainers; [ ambroisie ]; }; diff --git a/pkgs/development/python-modules/ezyrb/default.nix b/pkgs/development/python-modules/ezyrb/default.nix index faa7efa650f82..024509dad06b8 100644 --- a/pkgs/development/python-modules/ezyrb/default.nix +++ b/pkgs/development/python-modules/ezyrb/default.nix @@ -14,7 +14,7 @@ buildPythonPackage rec { pname = "ezyrb"; - version = "1.3.0.post2401"; + version = "1.3.0.post2402"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -23,7 +23,7 @@ buildPythonPackage rec { owner = "mathLab"; repo = "EZyRB"; rev = "refs/tags/v${version}"; - hash = "sha256-mNpW9RSli7af0fHLh+cmBrOQaO0wlGOrcLigefMR2ww="; + hash = "sha256-MiFNTz3vrN4rMHK7e4ntE35wzgnPt6yczCv7XDcUlO8="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/face-recognition/default.nix b/pkgs/development/python-modules/face-recognition/default.nix index 8b06c83cf5aad..ef1d57e3eb67a 100644 --- a/pkgs/development/python-modules/face-recognition/default.nix +++ b/pkgs/development/python-modules/face-recognition/default.nix @@ -2,15 +2,17 @@ , fetchPypi , lib -# propagates + # propagates , click , dlib , face-recognition-models , numpy , pillow -# tests + # tests , pytestCheckHook +, config +, cudaSupport ? config.cudaSupport }: buildPythonPackage rec { @@ -18,7 +20,7 @@ buildPythonPackage rec { version = "1.3.0"; format = "setuptools"; - src = fetchPypi { + src = fetchPypi { pname = "face_recognition"; inherit version; hash = "sha256-Xl790WhqpWavDTzBMTsTHksZdleo/9A2aebT+tknBew="; @@ -36,6 +38,9 @@ buildPythonPackage rec { pytestCheckHook ]; + # Disables tests when running with cuda due to https://github.com/NixOS/nixpkgs/issues/225912 + doCheck = !config.cudaSupport; + meta = with lib; { license = licenses.mit; homepage = "https://github.com/ageitgey/face_recognition"; diff --git a/pkgs/development/python-modules/find-libpython/default.nix b/pkgs/development/python-modules/find-libpython/default.nix index 21ce69e071d7b..7a26be2b38edb 100644 --- a/pkgs/development/python-modules/find-libpython/default.nix +++ b/pkgs/development/python-modules/find-libpython/default.nix @@ -1,30 +1,42 @@ { lib , buildPythonPackage -, fetchPypi +, fetchFromGitHub , pytestCheckHook , pythonOlder +, setuptools +, setuptools-scm }: buildPythonPackage rec { pname = "find-libpython"; - version = "0.3.0"; - format = "setuptools"; + version = "0.3.1"; + pyproject = true; - src = fetchPypi { - inherit version; - pname = "find_libpython"; - sha256 = "sha256-bn/l2a9/rW3AZstVFaDpyQpx8f6yuy+OTNu0+DJ26eU="; + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "ktbarrett"; + repo = "find_libpython"; + rev = "refs/tags/v${version}"; + hash = "sha256-DBBAgfYQ4UBFn5Osb1kpVBWbrZVBAvcVGQ/J4rJO/rQ="; }; - disabled = pythonOlder "3.7"; + nativeBuildInputs = [ + setuptools + setuptools-scm + ]; - pythonImportsCheck = [ "find_libpython" ]; + nativeCheckInputs = [ + pytestCheckHook + ]; - nativeCheckInputs = [ pytestCheckHook ]; + pythonImportsCheck = [ + "find_libpython" + ]; meta = with lib; { description = "Finds the libpython associated with your environment, wherever it may be hiding"; - changelog = "https://github.com/ktbarrett/find_libpython/releases/tag/${version}"; + changelog = "https://github.com/ktbarrett/find_libpython/releases/tag/v${version}"; homepage = "https://github.com/ktbarrett/find_libpython"; license = licenses.mit; maintainers = with maintainers; [ jleightcap ]; diff --git a/pkgs/development/python-modules/fingerprints/default.nix b/pkgs/development/python-modules/fingerprints/default.nix index 00c2efe7e3f31..a4e3be44b06fa 100644 --- a/pkgs/development/python-modules/fingerprints/default.nix +++ b/pkgs/development/python-modules/fingerprints/default.nix @@ -1,21 +1,30 @@ { lib -, fetchFromGitHub , buildPythonPackage +, fetchFromGitHub , normality , pytestCheckHook +, pythonOlder +, setuptools }: + buildPythonPackage rec { pname = "fingerprints"; - version = "1.1.0"; - format = "setuptools"; + version = "1.2.3"; + pyproject = true; + + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "alephdata"; repo = "fingerprints"; rev = version; - hash = "sha256-rptBM08dvivfglPvl3PZd9V/7u2SHbJ/BxfVHNGMt3A="; + hash = "sha256-U2UslCy1OagVTtllCKsEBX4zI/qIczbxs2Cxzy+/Xys="; }; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ normality ]; @@ -32,6 +41,6 @@ buildPythonPackage rec { description = "A library to generate entity fingerprints"; homepage = "https://github.com/alephdata/fingerprints"; license = licenses.mit; - maintainers = [ ]; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/development/python-modules/flake8-bugbear/default.nix b/pkgs/development/python-modules/flake8-bugbear/default.nix index 3a24547016c2c..841aac2be5717 100644 --- a/pkgs/development/python-modules/flake8-bugbear/default.nix +++ b/pkgs/development/python-modules/flake8-bugbear/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "flake8-bugbear"; - version = "23.12.2"; + version = "24.1.17"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "PyCQA"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-5l57t7TMtidp6j4tluz8/af5kgPdD8GKY7B7u/toc8I="; + hash = "sha256-dkegdW+yTZVmtDJDo67dSkLvEFaqvOw17FpZA4JgHN0="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/flask-caching/default.nix b/pkgs/development/python-modules/flask-caching/default.nix index 08ff5d808f06f..e9b1e3643bdb3 100644 --- a/pkgs/development/python-modules/flask-caching/default.nix +++ b/pkgs/development/python-modules/flask-caching/default.nix @@ -13,13 +13,13 @@ buildPythonPackage rec { pname = "Flask-Caching"; - version = "2.0.2"; + version = "2.1.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-JLYMVS1ZqWBcwbakLFbNs5qCoo2rRTK77bkiKuVOy04="; + hash = "sha256-t1AMFFE1g2qVLj3jqAiB2WVOMnopyFLJJlYH9cRJI1w="; }; postPatch = '' @@ -47,6 +47,7 @@ buildPythonPackage rec { "Memcache" ] ++ lib.optionals stdenv.isDarwin [ # ignore flaky test + "test_cache_timeout_dynamic" "test_cached_view_class" ]; diff --git a/pkgs/development/python-modules/flask-marshmallow/default.nix b/pkgs/development/python-modules/flask-marshmallow/default.nix index 8f23f51fe9795..0be4e2ffe2511 100644 --- a/pkgs/development/python-modules/flask-marshmallow/default.nix +++ b/pkgs/development/python-modules/flask-marshmallow/default.nix @@ -2,9 +2,9 @@ , buildPythonPackage , fetchFromGitHub , pythonOlder +, flit-core , flask , marshmallow -, packaging , pytestCheckHook , flask-sqlalchemy , marshmallow-sqlalchemy @@ -12,22 +12,25 @@ buildPythonPackage rec { pname = "flask-marshmallow"; - version = "0.15.0"; - format = "setuptools"; + version = "1.1.0"; + pyproject = true; - disabled = pythonOlder "3.7"; + disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "marshmallow-code"; repo = "flask-marshmallow"; rev = "refs/tags/${version}"; - hash = "sha256-N21M/MzcvOaDh5BgbbZtNcpRAULtWGLTMberCfOUoEM="; + hash = "sha256-+5L4OfBRMkS6WRXT7dI/uuqloc/PZgu+DFvOCinByh8="; }; + nativeBuildInputs = [ + flit-core + ]; + propagatedBuildInputs = [ flask marshmallow - packaging ]; nativeCheckInputs = [ diff --git a/pkgs/development/python-modules/flask-security-too/default.nix b/pkgs/development/python-modules/flask-security-too/default.nix index b8f375dbcf091..9fab0385e4630 100644 --- a/pkgs/development/python-modules/flask-security-too/default.nix +++ b/pkgs/development/python-modules/flask-security-too/default.nix @@ -3,7 +3,7 @@ , fetchPypi , pythonOlder , setuptools -, pydantic +, fetchpatch # extras: babel , babel @@ -59,6 +59,16 @@ buildPythonPackage rec { hash = "sha256-we2TquU28qP/ir4eE67J0Nlft/8IL8w7Ny3ypSE5cNk="; }; + patches = [ + # https://github.com/Flask-Middleware/flask-security/pull/901 + (fetchpatch { + name = "fixes-for-py_webauthn-2.0.patch"; + url = "https://github.com/Flask-Middleware/flask-security/commit/5725f7021343567ec0b25c890e859f4e84c93ba6.patch"; + hash = "sha256-4EgwT4zRj0mh4ZaoZFz7H5KeiZ9zs+BY4siYm8DwMfU="; + excludes = [ "CHANGES.rst" ]; + }) + ]; + nativeBuildInputs = [ setuptools ]; @@ -128,7 +138,5 @@ buildPythonPackage rec { description = "Simple security for Flask apps (fork)"; license = licenses.mit; maintainers = with maintainers; [ gador ]; - # https://github.com/Flask-Middleware/flask-security/pull/851 - broken = versionAtLeast pydantic.version "2"; }; } diff --git a/pkgs/development/python-modules/flet-core/default.nix b/pkgs/development/python-modules/flet-core/default.nix index 8c5bde07e016b..2b84348f36f5b 100644 --- a/pkgs/development/python-modules/flet-core/default.nix +++ b/pkgs/development/python-modules/flet-core/default.nix @@ -12,13 +12,13 @@ buildPythonPackage rec { pname = "flet-core"; - version = "0.18.0"; - format = "pyproject"; + version = "0.19.0"; + pyproject = true; src = fetchPypi { pname = "flet_core"; inherit version; - hash = "sha256-PbAzbDK9DkQBdrym9H3uBvPeeK8Qocq+t8veF+7izOQ="; + hash = "sha256-JRV56SwIhrsJHX/fzQKI0R2o/I+H5xXCXVu7uBiyIP8="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/flet-runtime/default.nix b/pkgs/development/python-modules/flet-runtime/default.nix index 21c5934f8c4b7..9f2a9a68de3d8 100644 --- a/pkgs/development/python-modules/flet-runtime/default.nix +++ b/pkgs/development/python-modules/flet-runtime/default.nix @@ -2,6 +2,7 @@ , buildPythonPackage , fetchPypi , poetry-core +, pythonRelaxDepsHook , flet-core , httpx , oauthlib @@ -9,17 +10,22 @@ buildPythonPackage rec { pname = "flet-runtime"; - version = "0.18.0"; - format = "pyproject"; + version = "0.19.0"; + pyproject = true; src = fetchPypi { pname = "flet_runtime"; inherit version; - hash = "sha256-VfPTfCJXpRZsKM4ToFyl7zxbk58HT6eOYthfzAM4f88="; + hash = "sha256-no2oDGZG1svrOZLNAao279qeHwyk5SGibDG4UqpriiU="; }; nativeBuildInputs = [ poetry-core + pythonRelaxDepsHook + ]; + + pythonRelaxDeps = [ + "httpx" ]; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/flet/default.nix b/pkgs/development/python-modules/flet/default.nix index 815d43c18e032..1730e0515ce21 100644 --- a/pkgs/development/python-modules/flet/default.nix +++ b/pkgs/development/python-modules/flet/default.nix @@ -1,6 +1,7 @@ { lib , buildPythonPackage , fetchPypi +, pythonRelaxDepsHook # build-system , poetry-core @@ -21,16 +22,21 @@ buildPythonPackage rec { pname = "flet"; - version = "0.18.0"; - format = "pyproject"; + version = "0.19.0"; + pyproject = true; src = fetchPypi { inherit pname version; - hash = "sha256-ix9O4wBq7/gwkV+23B+dnxTYv/VL6w8RmnvbYWcWqmc="; + hash = "sha256-YpML/NIUiL1WYg6zR6l60nJ6KRBfjMOjRbPDdjhR3/Q="; }; nativeBuildInputs = [ poetry-core + pythonRelaxDepsHook + ]; + + pythonRelaxDeps = [ + "websockets" ]; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/flipr-api/default.nix b/pkgs/development/python-modules/flipr-api/default.nix index 1f23aaa2481e1..43b865b9faa37 100644 --- a/pkgs/development/python-modules/flipr-api/default.nix +++ b/pkgs/development/python-modules/flipr-api/default.nix @@ -12,16 +12,16 @@ buildPythonPackage rec { pname = "flipr-api"; - version = "1.5.0"; - format = "pyproject"; + version = "1.5.1"; + pyproject = true; - disabled = pythonOlder "3.6"; + disabled = pythonOlder "3.9"; src = fetchFromGitHub { owner = "cnico"; - repo = pname; + repo = "flipr-api"; rev = "refs/tags/${version}"; - hash = "sha256-IAxB3i/HkwO5sjDh2aBCtijOcG0VIbatQjTWIh0inoM="; + hash = "sha256-xgLi2lH+EPPNlMixqOzdBGVLuoJh5dhZ2tHZ0UH+lOk="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/fontparts/default.nix b/pkgs/development/python-modules/fontparts/default.nix index e3113b8d1fb40..9f042cf1ef460 100644 --- a/pkgs/development/python-modules/fontparts/default.nix +++ b/pkgs/development/python-modules/fontparts/default.nix @@ -6,13 +6,13 @@ buildPythonPackage rec { pname = "fontParts"; - version = "0.11.0"; + version = "0.12.1"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-He3BAIWxwDIM80ixmYjyAHlwDK9bBe/qS8P4+TVEkEg="; + hash = "sha256-eeU13S1IcC+bsiK3YDlT4rVDeXDGcxx1wY/is8t5pCA="; extension = "zip"; }; diff --git a/pkgs/development/python-modules/fonttools/default.nix b/pkgs/development/python-modules/fonttools/default.nix index db66e46f3d9d4..e07ab3c0d9536 100644 --- a/pkgs/development/python-modules/fonttools/default.nix +++ b/pkgs/development/python-modules/fonttools/default.nix @@ -60,7 +60,7 @@ buildPythonPackage rec { pytestCheckHook ] ++ lib.concatLists (lib.attrVals ([ "woff" - "interpolatable" + # "interpolatable" is not included because it only contains 2 tests at the time of writing but adds 270 extra dependencies "ufo" ] ++ lib.optionals (!skia-pathops.meta.broken) [ "pathops" # broken diff --git a/pkgs/development/python-modules/formulaic/default.nix b/pkgs/development/python-modules/formulaic/default.nix index f6aa82c9682c5..bf448a42c95bc 100644 --- a/pkgs/development/python-modules/formulaic/default.nix +++ b/pkgs/development/python-modules/formulaic/default.nix @@ -1,25 +1,27 @@ { lib +, astor , buildPythonPackage , fetchFromGitHub -, pytestCheckHook -, hatchling -, hatch-vcs , git -, astor +, hatch-vcs +, hatchling , interface-meta , numpy , pandas +, pytestCheckHook +, pythonOlder , scipy , sympy -, wrapt , typing-extensions +, wrapt }: buildPythonPackage rec { pname = "formulaic"; version = "1.0.1"; + pyproject = true; - format = "pyproject"; + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "matthewwardrop"; @@ -28,6 +30,8 @@ buildPythonPackage rec { hash = "sha256-qivWv1LtFkW55tVKD/Zjd8Q5gVbxhDpZ0inkV6NR7bA="; }; + env.SETUPTOOLS_SCM_PRETEND_VERSION = version; + nativeBuildInputs = [ hatchling hatch-vcs @@ -44,18 +48,23 @@ buildPythonPackage rec { sympy ]; - pythonImportsCheck = [ "formulaic" ]; + nativeCheckInputs = [ + pytestCheckHook + ]; - nativeCheckInputs = [ pytestCheckHook ]; + pythonImportsCheck = [ + "formulaic" + ]; disabledTestPaths = [ "tests/transforms/test_poly.py" ]; - meta = { + meta = with lib; { + description = "High-performance implementation of Wilkinson formulas"; homepage = "https://matthewwardrop.github.io/formulaic/"; - description = "High-performance implementation of Wilkinson formulas for"; - license = lib.licenses.mit; - maintainers = with lib.maintainers; [ swflint ]; + changelog = "https://github.com/matthewwardrop/formulaic/releases/tag/v${version}"; + license = licenses.mit; + maintainers = with maintainers; [ swflint ]; }; } diff --git a/pkgs/development/python-modules/fpylll/default.nix b/pkgs/development/python-modules/fpylll/default.nix index 2de77cfbd69d9..97abc4562fe6e 100644 --- a/pkgs/development/python-modules/fpylll/default.nix +++ b/pkgs/development/python-modules/fpylll/default.nix @@ -20,14 +20,14 @@ buildPythonPackage rec { pname = "fpylll"; - version = "0.6.0"; + version = "0.6.1"; pyproject = true; src = fetchFromGitHub { owner = "fplll"; repo = "fpylll"; rev = "refs/tags/${version}"; - hash = "sha256-EyReCkVRb3CgzIRal5H13OX/UdwWi+evDe7PoS1qP4A="; + hash = "sha256-M3ZnDL0Ui3UAa5Jn/Wr5pAHhghP7EAaQD/sx5QZ58ZQ="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/freebox-api/default.nix b/pkgs/development/python-modules/freebox-api/default.nix index 950b2d4caee4c..4758712f0fb48 100644 --- a/pkgs/development/python-modules/freebox-api/default.nix +++ b/pkgs/development/python-modules/freebox-api/default.nix @@ -5,6 +5,7 @@ , poetry-core , pytestCheckHook , pythonOlder +, pythonRelaxDepsHook , urllib3 }: @@ -24,6 +25,11 @@ buildPythonPackage rec { nativeBuildInputs = [ poetry-core + pythonRelaxDepsHook + ]; + + pythonRelaxDeps = [ + "urllib3" ]; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/frigidaire/default.nix b/pkgs/development/python-modules/frigidaire/default.nix index 1519347b8ba2e..d8ddff87463b6 100644 --- a/pkgs/development/python-modules/frigidaire/default.nix +++ b/pkgs/development/python-modules/frigidaire/default.nix @@ -6,28 +6,33 @@ , idna , pythonOlder , requests +, setuptools , urllib3 }: buildPythonPackage rec { pname = "frigidaire"; - version = "0.18.13"; - format = "setuptools"; + version = "0.18.15"; + pyproject = true; disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "bm1549"; - repo = pname; + repo = "frigidaire"; rev = "refs/tags/${version}"; - hash = "sha256-FikBV4KjutQfupGPXcVT1h+BfQ099WRrmbrEJOaVCQI="; + hash = "sha256-5+epdQyeTGJp8iTrX6vyp4JgM45Fl5cb67Z8trNBe+8="; }; postPatch = '' substituteInPlace setup.py \ - --replace 'version = "SNAPSHOT"' 'version = "${version}"' + --replace-warn 'version = "SNAPSHOT"' 'version = "${version}"' ''; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ certifi chardet diff --git a/pkgs/development/python-modules/fuse-python/default.nix b/pkgs/development/python-modules/fuse-python/default.nix index 87f075460caf0..8bcb486a6311c 100644 --- a/pkgs/development/python-modules/fuse-python/default.nix +++ b/pkgs/development/python-modules/fuse-python/default.nix @@ -2,12 +2,12 @@ buildPythonPackage rec { pname = "fuse-python"; - version = "1.0.5"; + version = "1.0.7"; format = "setuptools"; src = fetchPypi { inherit pname version; - hash = "sha256-dOX/szaCu6mlrypaBI9Ht+e0ZOv4QpG/WiWL+60Do6o="; + hash = "sha256-MhiAY2UkCM1HKuu2+S0135LIu0IAk3H4yJJ7s35r3Rs="; }; buildInputs = [ fuse ]; diff --git a/pkgs/development/python-modules/galois/default.nix b/pkgs/development/python-modules/galois/default.nix index cfb4ac57d5636..8c927b96019f4 100644 --- a/pkgs/development/python-modules/galois/default.nix +++ b/pkgs/development/python-modules/galois/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "galois"; - version = "0.3.7"; + version = "0.3.8"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -22,7 +22,7 @@ buildPythonPackage rec { owner = "mhostetter"; repo = "galois"; rev = "refs/tags/v${version}"; - hash = "sha256-dWYnD+Byh0orRg20/nhu8ILooFBeHysxQ403boDVqYk="; + hash = "sha256-Nfr9gD2FLZ+KvHh1mcpReUWnzFr/NxpvperzZPoFeT4="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/gardena-bluetooth/default.nix b/pkgs/development/python-modules/gardena-bluetooth/default.nix new file mode 100644 index 0000000000000..fb71990c99dfb --- /dev/null +++ b/pkgs/development/python-modules/gardena-bluetooth/default.nix @@ -0,0 +1,60 @@ +{ lib +, asyncclick +, bleak +, bleak-retry-connector +, buildPythonPackage +, fetchFromGitHub +, poetry-core +, pytest-asyncio +, pytestCheckHook +, pythonOlder +, tzlocal +}: + +buildPythonPackage rec { + pname = "gardena-bluetooth"; + version = "1.4.1"; + pyproject = true; + + disabled = pythonOlder "3.10"; + + src = fetchFromGitHub { + owner = "elupus"; + repo = "gardena-bluetooth"; + rev = "refs/tags/${version}"; + hash = "sha256-WnurxoSzzNTNxz6S1HSKb/lTuOyox6fG2I0Hlj95Ub0="; + }; + + nativeBuildInputs = [ + poetry-core + ]; + + propagatedBuildInputs = [ + bleak + bleak-retry-connector + tzlocal + ]; + + passthru.optional-dependencies = { + cli = [ + asyncclick + ]; + }; + + nativeCheckInputs = [ + pytestCheckHook + pytest-asyncio + ]; + + pythonImportsCheck = [ + "gardena_bluetooth" + ]; + + meta = with lib; { + description = "Module for interacting with Gardena Bluetooth"; + homepage = "https://github.com/elupus/gardena-bluetooth"; + changelog = "https://github.com/elupus/gardena-bluetooth/releases/tag/${version}"; + license = licenses.mit; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/garminconnect/default.nix b/pkgs/development/python-modules/garminconnect/default.nix index 43604aa29333f..42363ecdcdd48 100644 --- a/pkgs/development/python-modules/garminconnect/default.nix +++ b/pkgs/development/python-modules/garminconnect/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "garminconnect"; - version = "0.2.12"; + version = "0.2.13"; pyproject = true; disabled = pythonOlder "3.10"; @@ -19,7 +19,7 @@ buildPythonPackage rec { owner = "cyberjunky"; repo = "python-garminconnect"; rev = "refs/tags/${version}"; - hash = "sha256-uq3biWZvcORvrAMd/Ix0Cj1ol5fiqdDsO54zD82G2vA="; + hash = "sha256-9At9v+7jOt43qPOhZpFYBEXA2zUfp8MAGO4/676kcBU="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/gcs-oauth2-boto-plugin/default.nix b/pkgs/development/python-modules/gcs-oauth2-boto-plugin/default.nix index cb298fa2bab13..85e18fb12499a 100644 --- a/pkgs/development/python-modules/gcs-oauth2-boto-plugin/default.nix +++ b/pkgs/development/python-modules/gcs-oauth2-boto-plugin/default.nix @@ -11,7 +11,7 @@ , pytestCheckHook , pythonOlder , pythonRelaxDepsHook -, retry_decorator +, retry-decorator , rsa , six }: @@ -43,7 +43,7 @@ buildPythonPackage rec { httplib2 oauth2client pyopenssl - retry_decorator + retry-decorator rsa six ]; diff --git a/pkgs/development/python-modules/gdown/default.nix b/pkgs/development/python-modules/gdown/default.nix index 363fe2b333977..0fe18c1a96de3 100644 --- a/pkgs/development/python-modules/gdown/default.nix +++ b/pkgs/development/python-modules/gdown/default.nix @@ -12,14 +12,14 @@ buildPythonPackage rec { pname = "gdown"; - version = "4.7.1"; + version = "4.7.3"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-NH8jdpZ5qvfvpz5WVScPzajKVr5l64Skoh0UOYlUEEU="; + hash = "sha256-N+3DoO3aGn/l68xjHDqtBhJYJ2ZGBjDuUvSBuh7Hrv4="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/gehomesdk/default.nix b/pkgs/development/python-modules/gehomesdk/default.nix index 9b66fc47bd641..3cbc255ec7a0a 100644 --- a/pkgs/development/python-modules/gehomesdk/default.nix +++ b/pkgs/development/python-modules/gehomesdk/default.nix @@ -7,22 +7,27 @@ , lxml , pythonOlder , requests +, setuptools , slixmpp , websockets }: buildPythonPackage rec { pname = "gehomesdk"; - version = "0.5.26"; - format = "setuptools"; + version = "0.5.27"; + pyproject = true; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-eIpBVfkUIQBriZ4wxp8ii5YmuuKF8r0lNauBEEqoNV8="; + hash = "sha256-H76y784lYzETgq5XSsQOSGka/kvM+hyMHzUHEJuXTuk="; }; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ aiohttp bidict diff --git a/pkgs/development/python-modules/gentools/default.nix b/pkgs/development/python-modules/gentools/default.nix index e4760c3fe9585..7dd95925f4ba2 100644 --- a/pkgs/development/python-modules/gentools/default.nix +++ b/pkgs/development/python-modules/gentools/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "gentools"; - version = "1.2.1"; + version = "1.2.2"; pyproject = true; disabled = pythonOlder "3.7"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "ariebovenberg"; repo = "gentools"; rev = "refs/tags/v${version}"; - hash = "sha256-RBUIji3FOIRjfp4t7zBAVSeiWaYufz4ID8nTWmhDkf8="; + hash = "sha256-+6KTFxOpwvGOCqy6JU87gOZmDa6MvjR10qES5wIfrjI="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/geometric/default.nix b/pkgs/development/python-modules/geometric/default.nix index 0693e209b4571..3178b959475a0 100644 --- a/pkgs/development/python-modules/geometric/default.nix +++ b/pkgs/development/python-modules/geometric/default.nix @@ -11,14 +11,14 @@ buildPythonPackage rec { pname = "geometric"; - version = "1.0.1"; + version = "1.0.2"; format = "setuptools"; src = fetchFromGitHub { owner = "leeping"; repo = "geomeTRIC"; - rev = version; - hash = "sha256-3d4z1n8+e0HgdeKLNSsHLb3XHOk09uy+gP9AwNvNITE="; + rev = "refs/tags/${version}"; + hash = "sha256-DmrKLVQrPQDzTMxqEImnvRr3Wb2R3+hxtDVCN9XUcFM="; }; patches = [ (fetchpatch { diff --git a/pkgs/development/python-modules/geopandas/default.nix b/pkgs/development/python-modules/geopandas/default.nix index 92aa4631c4bbd..522e0f6e59e33 100644 --- a/pkgs/development/python-modules/geopandas/default.nix +++ b/pkgs/development/python-modules/geopandas/default.nix @@ -14,7 +14,7 @@ buildPythonPackage rec { pname = "geopandas"; - version = "0.14.2"; + version = "0.14.3"; format = "setuptools"; disabled = pythonOlder "3.9"; @@ -23,7 +23,7 @@ buildPythonPackage rec { owner = "geopandas"; repo = "geopandas"; rev = "refs/tags/v${version}"; - hash = "sha256-E4J6VBKPwyQ4IVVClLzNoI//oxlymY+KE6ALaENWwOg="; + hash = "sha256-qAINoqnCVfpg2mQhnu0qT/5EjUB+9a3//H8vJJnyj6A="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/georss-client/default.nix b/pkgs/development/python-modules/georss-client/default.nix index d6529cbf9fec3..51d895456da34 100644 --- a/pkgs/development/python-modules/georss-client/default.nix +++ b/pkgs/development/python-modules/georss-client/default.nix @@ -6,23 +6,28 @@ , pytestCheckHook , pythonOlder , requests +, setuptools , xmltodict }: buildPythonPackage rec { pname = "georss-client"; - version = "0.15"; - format = "setuptools"; + version = "0.17"; + pyproject = true; - disabled = pythonOlder "3.7"; + disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "exxamalte"; repo = "python-georss-client"; - rev = "v${version}"; - hash = "sha256-D1ggfEDU+vlFmi1USwdHj1due0PrCQCpKF4zaarHCFs="; + rev = "refs/tags/v${version}"; + hash = "sha256-DvQifO/jirpacWZccK4WPxnm/iYs1qT5nAYQUDoleO4="; }; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ haversine xmltodict @@ -41,6 +46,7 @@ buildPythonPackage rec { meta = with lib; { description = "Python library for accessing GeoRSS feeds"; homepage = "https://github.com/exxamalte/python-georss-client"; + changelog = "https://github.com/exxamalte/python-georss-client/releases/tag/v${version}"; license = with licenses; [ asl20 ]; maintainers = with maintainers; [ fab ]; }; diff --git a/pkgs/development/python-modules/georss-generic-client/default.nix b/pkgs/development/python-modules/georss-generic-client/default.nix index 73cafe77bb901..b3679a93a2fd3 100644 --- a/pkgs/development/python-modules/georss-generic-client/default.nix +++ b/pkgs/development/python-modules/georss-generic-client/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "georss-generic-client"; - version = "0.7"; + version = "0.8"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -16,7 +16,7 @@ buildPythonPackage rec { owner = "exxamalte"; repo = "python-georss-generic-client"; rev = "v${version}"; - hash = "sha256-58NpACrJK29NUnx3RrsLFPPo+6A/JlIlkrv8N9juMu0="; + hash = "sha256-Y19zMHL6DjAqiDi47Lmst8m9d9kEtTgyRiECKo6CqZY="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/georss-ingv-centro-nazionale-terremoti-client/default.nix b/pkgs/development/python-modules/georss-ingv-centro-nazionale-terremoti-client/default.nix index 273b67acfb7cf..e74f3670f223a 100644 --- a/pkgs/development/python-modules/georss-ingv-centro-nazionale-terremoti-client/default.nix +++ b/pkgs/development/python-modules/georss-ingv-centro-nazionale-terremoti-client/default.nix @@ -4,22 +4,27 @@ , georss-client , pytestCheckHook , pythonOlder +, setuptools }: buildPythonPackage rec { pname = "georss-ingv-centro-nazionale-terremoti-client"; - version = "0.6"; - format = "setuptools"; + version = "0.7"; + pyproject = true; disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "exxamalte"; repo = "python-georss-ingv-centro-nazionale-terremoti-client"; - rev = "v${version}"; - hash = "sha256-zqjo70NzpUt5zNEar0P1sl/gMb+ZcS+7GX7QGuFjMYY="; + rev = "refs/tags/v${version}"; + hash = "sha256-J72yd1D4mKCOsBRLMUXKnxmjr6g0IQApTTrWjklczN8="; }; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ georss-client ]; @@ -35,6 +40,7 @@ buildPythonPackage rec { meta = with lib; { description = "Python library for accessing the INGV Centro Nazionale Terremoti GeoRSS feed"; homepage = "https://github.com/exxamalte/python-georss-ingv-centro-nazionale-terremoti-client"; + changelog = "https://github.com/exxamalte/python-georss-ingv-centro-nazionale-terremoti-client/releases/tag/v${version}"; license = with licenses; [ asl20 ]; maintainers = with maintainers; [ fab ]; }; diff --git a/pkgs/development/python-modules/getjump/default.nix b/pkgs/development/python-modules/getjump/default.nix index 3decbf7aed2ea..d7a46de9038be 100644 --- a/pkgs/development/python-modules/getjump/default.nix +++ b/pkgs/development/python-modules/getjump/default.nix @@ -10,12 +10,12 @@ buildPythonPackage rec { pname = "getjump"; - version = "2.4.1"; + version = "2.4.2"; pyproject = true; src = fetchPypi { inherit pname version; - hash = "sha256-rNMhyUqrliKf6CPhZfyUwN00D4TgOWjPCoqihOB0PDE="; + hash = "sha256-WSLfhVCqP+N+2Rs2PUXOknnlNx3UtWdFYrK1lTW1fqQ="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/git-annex-adapter/default.nix b/pkgs/development/python-modules/git-annex-adapter/default.nix index 1279be5e9d3f5..8af128e895a0c 100644 --- a/pkgs/development/python-modules/git-annex-adapter/default.nix +++ b/pkgs/development/python-modules/git-annex-adapter/default.nix @@ -1,20 +1,31 @@ -{ lib, buildPythonPackage, isPy3k, fetchFromGitHub, fetchpatch, substituteAll -, python, util-linux, pygit2, gitMinimal, git-annex, cacert +{ lib +, buildPythonPackage +, cacert +, fetchFromGitHub +, fetchpatch +, git-annex +, gitMinimal +, pygit2 +, pytestCheckHook +, python +, pythonOlder +, setuptools +, substituteAll +, util-linux }: buildPythonPackage rec { pname = "git-annex-adapter"; version = "0.2.2"; - format = "setuptools"; + pyproject = true; - disabled = !isPy3k; + disabled = pythonOlder "3.7"; - # No tests in PyPI tarball src = fetchFromGitHub { owner = "alpernebbi"; - repo = pname; - rev = "v${version}"; - sha256 = "0666vqspgnvmfs6j3kifwyxr6zmxjs0wlwis7br4zcq0gk32zgdx"; + repo = "git-annex-adapter"; + rev = "refs/tags/v${version}"; + hash = "sha256-vb0vxnwAs0/yOjpyyoGWvX6Tu+cuziGNdnXbdzXexhg="; }; patches = [ @@ -37,17 +48,31 @@ buildPythonPackage rec { }) ]; + nativeBuildInputs = [ + setuptools + ]; + + propagatedBuildInputs = [ + pygit2 + cacert + ]; + nativeCheckInputs = [ gitMinimal util-linux # `rev` is needed in tests/test_process.py + pytestCheckHook ]; - propagatedBuildInputs = [ pygit2 cacert ]; + pythonImportsCheck = [ + "git_annex_adapter" + ]; - checkPhase = '' - ${python.interpreter} -m unittest - ''; - pythonImportsCheck = [ "git_annex_adapter" ]; + disabledTests = [ + # KeyError and AssertionError + "test_jsonprocess_annex_metadata_batch" + "test_process_annex_metadata_batch" + "test_batchjson_metadata" + ]; meta = with lib; { homepage = "https://github.com/alpernebbi/git-annex-adapter"; diff --git a/pkgs/development/python-modules/githubkit/default.nix b/pkgs/development/python-modules/githubkit/default.nix index 85509528bf35b..50ec8128885c9 100644 --- a/pkgs/development/python-modules/githubkit/default.nix +++ b/pkgs/development/python-modules/githubkit/default.nix @@ -1,37 +1,95 @@ { lib +, anyio , buildPythonPackage -, fetchPypi -, poetry-core +, fetchFromGitHub +, hishel , httpx +, poetry-core , pydantic +, pyjwt +, pytestCheckHook +, pythonOlder +, pythonRelaxDepsHook , typing-extensions }: buildPythonPackage rec { pname = "githubkit"; - version = "0.10.7"; + version = "0.11.1"; pyproject = true; - src = fetchPypi { - inherit pname version; - hash = "sha256-sKikL+761mBP7j+qugHKDQ0hVXT51FV8FYbB3ZJtweA="; + disabled = pythonOlder "3.8"; + + src = fetchFromGitHub { + owner = "yanyongyu"; + repo = "githubkit"; + rev = "refs/tags/v${version}"; + hash = "sha256-nPXs6thXAshDojgHSNyEeBN/jNJkfFECSuY5f51Zozo="; }; + pythonRelaxDeps = [ + "hishel" + ]; + + postPatch = '' + substituteInPlace pyproject.toml \ + --replace "--cov=githubkit --cov-append --cov-report=term-missing" "" + ''; + nativeBuildInputs = [ poetry-core + pythonRelaxDepsHook ]; propagatedBuildInputs = [ + hishel httpx pydantic typing-extensions ]; - pythonImportsCheck = [ "githubkit" ]; + passthru.optional-dependencies = { + all = [ + anyio + pyjwt + ]; + jwt = [ + pyjwt + ]; + auth-app = [ + pyjwt + ]; + auth-oauth-device = [ + anyio + ]; + auth = [ + anyio + pyjwt + ]; + }; + + nativeCheckInputs = [ + pytestCheckHook + ] ++ lib.flatten (builtins.attrValues passthru.optional-dependencies); + + pythonImportsCheck = [ + "githubkit" + ]; + + disabledTests = [ + # Tests require network access + "test_graphql" + "test_async_graphql" + "test_call" + "test_async_call" + "test_versioned_call" + "test_versioned_async_call" + ]; meta = { description = "GitHub SDK for Python"; homepage = "https://github.com/yanyongyu/githubkit"; + changelog = "https://github.com/yanyongyu/githubkit/releases/tag/v${version}"; license = lib.licenses.mit; maintainers = with lib.maintainers; [ kranzes ]; }; diff --git a/pkgs/development/python-modules/gitignore-parser/default.nix b/pkgs/development/python-modules/gitignore-parser/default.nix index 7f3b41b5899e3..50239a9b26532 100644 --- a/pkgs/development/python-modules/gitignore-parser/default.nix +++ b/pkgs/development/python-modules/gitignore-parser/default.nix @@ -2,13 +2,14 @@ , buildPythonPackage , fetchFromGitHub , pythonOlder +, setuptools , unittestCheckHook }: buildPythonPackage rec { pname = "gitignore-parser"; - version = "0.1.10"; - format = "setuptools"; + version = "0.1.11"; + pyproject = true; disabled = pythonOlder "3.7"; @@ -16,9 +17,13 @@ buildPythonPackage rec { owner = "mherrmann"; repo = "gitignore_parser"; rev = "refs/tags/v${version}"; - hash = "sha256-uILXtozXRTOJeVpF1lpM19xaibebiwIMyHzdrlnfoec="; + hash = "sha256-y8A8OLgJccYWvKTJs7um8RwFFM0CswbwRojknBmk3TY="; }; + nativeBuildInputs = [ + setuptools + ]; + nativeCheckInputs = [ unittestCheckHook ]; diff --git a/pkgs/development/python-modules/gitlike-commands/default.nix b/pkgs/development/python-modules/gitlike-commands/default.nix index f51adf2a184a6..c5e8ab506696f 100644 --- a/pkgs/development/python-modules/gitlike-commands/default.nix +++ b/pkgs/development/python-modules/gitlike-commands/default.nix @@ -7,7 +7,7 @@ buildPythonPackage rec { pname = "gitlike-commands"; - version = "0.2.1"; + version = "0.3.0"; pyproject = true; disabled = pythonOlder "3.9"; @@ -16,7 +16,7 @@ buildPythonPackage rec { owner = "unixorn"; repo = "gitlike-commands"; rev = "refs/tags/v${version}"; - hash = "sha256-VjweN4gigzCNvg6TccZx2Xw1p7SusKplxUTZjItTQc0="; + hash = "sha256-Z0l8nCKov1iMJvI3YTHvg0ey+oPju3rgaKtmk6OX44g="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/glean-parser/default.nix b/pkgs/development/python-modules/glean-parser/default.nix index d85a0771a8093..380ada5d33a6a 100644 --- a/pkgs/development/python-modules/glean-parser/default.nix +++ b/pkgs/development/python-modules/glean-parser/default.nix @@ -15,15 +15,15 @@ buildPythonPackage rec { pname = "glean-parser"; - version = "10.0.3"; + version = "11.0.1"; format = "setuptools"; - disabled = pythonOlder "3.6"; + disabled = pythonOlder "3.8"; src = fetchPypi { pname = "glean_parser"; inherit version; - hash = "sha256-1XNZYp0pX57lcAaKKEaWaJLj/ttyIlnsvNjMN20pm1E="; + hash = "sha256-eeUjtRsP3c6fbGMJ+oxkMou3BrLWyEelP4ipPQFpXkM="; }; postPatch = '' diff --git a/pkgs/development/python-modules/glfw/default.nix b/pkgs/development/python-modules/glfw/default.nix index 31d6c0a275d8e..667206fa58ead 100644 --- a/pkgs/development/python-modules/glfw/default.nix +++ b/pkgs/development/python-modules/glfw/default.nix @@ -7,7 +7,7 @@ buildPythonPackage rec { pname = "glfw"; - version = "2.6.4"; + version = "2.6.5"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -16,7 +16,7 @@ buildPythonPackage rec { owner = "FlorianRhiem"; repo = "pyGLFW"; rev = "refs/tags/v${version}"; - hash = "sha256-ANydW+4uLIJelUdDCHZ6WJgIJHNXzdc9jK/nZbZHi+I="; + hash = "sha256-mh2l63Nt9YMCPM3AplKWPx5HQZi2/cm+dUS56JB8fGA="; }; # Patch path to GLFW shared object diff --git a/pkgs/development/python-modules/gocardless-pro/default.nix b/pkgs/development/python-modules/gocardless-pro/default.nix index 04f97a879f8a4..a1c5cff80ddab 100644 --- a/pkgs/development/python-modules/gocardless-pro/default.nix +++ b/pkgs/development/python-modules/gocardless-pro/default.nix @@ -10,14 +10,14 @@ buildPythonPackage rec { pname = "gocardless-pro"; - version = "1.49.0"; + version = "1.51.0"; format = "setuptools"; src = fetchFromGitHub { owner = "gocardless"; repo = "gocardless-pro-python"; - rev = "refs/tags/${version}"; - hash = "sha256-jhZfbJLf/gMXfErVbO2erBxgULmKyp1C0+t0k1d0o54="; + rev = "refs/tags/v${version}"; + hash = "sha256-4pyVcyEa8iex7ngTibxWYu4HeW+6V5OASkxqjHIOe2Y="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/google-ai-generativelanguage/default.nix b/pkgs/development/python-modules/google-ai-generativelanguage/default.nix index ac6dfc1719337..69a56b278358d 100644 --- a/pkgs/development/python-modules/google-ai-generativelanguage/default.nix +++ b/pkgs/development/python-modules/google-ai-generativelanguage/default.nix @@ -15,14 +15,14 @@ buildPythonPackage rec { pname = "google-ai-generativelanguage"; - version = "0.4.0"; + version = "0.5.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-yBmQZsCPdMTpEpB3gym7nzV7oepdb4LeK8DRBVK/T4w="; + hash = "sha256-fF7pjNpfSeCnhbDUz+gVn+NKBQKdCEAVLzlRQUEpXX8="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/google-cloud-asset/default.nix b/pkgs/development/python-modules/google-cloud-asset/default.nix index ddc78dc7cc57c..4d090d6e738e1 100644 --- a/pkgs/development/python-modules/google-cloud-asset/default.nix +++ b/pkgs/development/python-modules/google-cloud-asset/default.nix @@ -19,14 +19,14 @@ buildPythonPackage rec { pname = "google-cloud-asset"; - version = "3.22.0"; + version = "3.24.0"; pyproject = true; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-S+rJ80pkphkPlNFUn8e0bxpnkBILRS9Uvoa0vlfrK8M="; + hash = "sha256-A9Ov5a6lpcJ+6diVEjFlLKMwROuSKO/lZOuGxN6Nn7U="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/google-cloud-bigquery-datatransfer/default.nix b/pkgs/development/python-modules/google-cloud-bigquery-datatransfer/default.nix index bf293c41541de..c975700ce1efb 100644 --- a/pkgs/development/python-modules/google-cloud-bigquery-datatransfer/default.nix +++ b/pkgs/development/python-modules/google-cloud-bigquery-datatransfer/default.nix @@ -14,14 +14,14 @@ buildPythonPackage rec { pname = "google-cloud-bigquery-datatransfer"; - version = "3.13.0"; + version = "3.14.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-J6hFyyJgWlEsBc4owokNLvl61O38mBevVVpz2AJOw7o="; + hash = "sha256-DZDp/aRhIe2bBcn8BVA8jwmDaUrbHAMMRG0LixuvGl0="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/google-cloud-bigquery-storage/default.nix b/pkgs/development/python-modules/google-cloud-bigquery-storage/default.nix index cbda1f2f254e9..d6952abe84f01 100644 --- a/pkgs/development/python-modules/google-cloud-bigquery-storage/default.nix +++ b/pkgs/development/python-modules/google-cloud-bigquery-storage/default.nix @@ -14,14 +14,14 @@ buildPythonPackage rec { pname = "google-cloud-bigquery-storage"; - version = "2.23.0"; + version = "2.24.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-hJbG0wV177IkwYlAVm+awAbTsSCudZACkYaXw0B5l+Y="; + hash = "sha256-tK9bmqzYOWuEB9G4d2AaN22O6m0ZKCOop4gb0v3Ads4="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/google-cloud-bigquery/default.nix b/pkgs/development/python-modules/google-cloud-bigquery/default.nix index 5eeb88cd9d0f9..b59372f294a03 100644 --- a/pkgs/development/python-modules/google-cloud-bigquery/default.nix +++ b/pkgs/development/python-modules/google-cloud-bigquery/default.nix @@ -28,14 +28,14 @@ buildPythonPackage rec { pname = "google-cloud-bigquery"; - version = "3.13.0"; + version = "3.17.1"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-eUzPyTzLDgrWiUQviW+cgt5W2g/hihlVMbs3CWwmV9Y="; + hash = "sha256-CuB7kNUFK6OilqIhCiFEwoRpMA1x9vRViB+Uwt9UMFc="; }; propagatedBuildInputs = [ @@ -127,8 +127,6 @@ buildPythonPackage rec { ]; meta = with lib; { - # Not compatible with pyarrow13 yet. - broken = true; description = "Google BigQuery API client library"; homepage = "https://github.com/googleapis/python-bigquery"; changelog = "https://github.com/googleapis/python-bigquery/blob/v${version}/CHANGELOG.md"; diff --git a/pkgs/development/python-modules/google-cloud-container/default.nix b/pkgs/development/python-modules/google-cloud-container/default.nix index 4d55bc739a23a..f3f4937688607 100644 --- a/pkgs/development/python-modules/google-cloud-container/default.nix +++ b/pkgs/development/python-modules/google-cloud-container/default.nix @@ -14,14 +14,14 @@ buildPythonPackage rec { pname = "google-cloud-container"; - version = "2.37.0"; + version = "2.39.0"; pyproject = true; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-kHWB2/iCAXFlHnifL+aPaU0i3xmgf1rOSsk8JhCx1Dk="; + hash = "sha256-qlnKOkdLM34R8Ly01+sElovrYTUk5ksiXcJUDn/GqAw="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/google-cloud-datacatalog/default.nix b/pkgs/development/python-modules/google-cloud-datacatalog/default.nix index 125e22f6690f5..f5bdde090be12 100644 --- a/pkgs/development/python-modules/google-cloud-datacatalog/default.nix +++ b/pkgs/development/python-modules/google-cloud-datacatalog/default.nix @@ -15,14 +15,14 @@ buildPythonPackage rec { pname = "google-cloud-datacatalog"; - version = "3.17.0"; + version = "3.18.0"; pyproject = true; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-xaKBfkgmhB7MH1qFWu9hjHIIVG1BjBgzjfnyD14V9Z0="; + hash = "sha256-rqWuOJlyB2EN3+qydRMJHLwK7RAFxUT7eEUZiAfOseE="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/google-cloud-dataproc/default.nix b/pkgs/development/python-modules/google-cloud-dataproc/default.nix index 3b0fff422ce18..41c8122f9857a 100644 --- a/pkgs/development/python-modules/google-cloud-dataproc/default.nix +++ b/pkgs/development/python-modules/google-cloud-dataproc/default.nix @@ -15,14 +15,14 @@ buildPythonPackage rec { pname = "google-cloud-dataproc"; - version = "5.8.0"; + version = "5.9.0"; pyproject = true; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-sDQS3WPLhNwLsIRM2emp7vQOHQ1xlkllkFLMzw0+ldc="; + hash = "sha256-flH5yQBbxfG8sjYnFx3pzWJGpEd1EYpIzGMoYSgKdt8="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/google-cloud-monitoring/default.nix b/pkgs/development/python-modules/google-cloud-monitoring/default.nix index 63060d008efd3..c0cff664760af 100644 --- a/pkgs/development/python-modules/google-cloud-monitoring/default.nix +++ b/pkgs/development/python-modules/google-cloud-monitoring/default.nix @@ -15,14 +15,14 @@ buildPythonPackage rec { pname = "google-cloud-monitoring"; - version = "2.18.0"; + version = "2.19.0"; pyproject = true; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-Bswdf7dcXlC1S8wASUHqSyCnqfCe1+bnU1FP2MQ2CWo="; + hash = "sha256-zhtDkpuJ4NH1lOFYmw+oO+R/H9gP6L+ud/4fdzIknwY="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/google-cloud-redis/default.nix b/pkgs/development/python-modules/google-cloud-redis/default.nix index 228545f62da4a..4515351495113 100644 --- a/pkgs/development/python-modules/google-cloud-redis/default.nix +++ b/pkgs/development/python-modules/google-cloud-redis/default.nix @@ -7,20 +7,25 @@ , pytest-asyncio , pytestCheckHook , pythonOlder +, setuptools }: buildPythonPackage rec { pname = "google-cloud-redis"; - version = "2.14.0"; - format = "setuptools"; + version = "2.15.0"; + pyproject = true; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-TzuRWGGdQrsmOLidvLiC80e9t9VVu8LUNhq2Ikk0Pco="; + hash = "sha256-EyThUipPk96q5TuJDMKugFSGXDdWi0vOH5EzP2zzcyI="; }; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ google-api-core proto-plus diff --git a/pkgs/development/python-modules/google-cloud-resource-manager/default.nix b/pkgs/development/python-modules/google-cloud-resource-manager/default.nix index 50f605f5fc99e..bc969f601b61a 100644 --- a/pkgs/development/python-modules/google-cloud-resource-manager/default.nix +++ b/pkgs/development/python-modules/google-cloud-resource-manager/default.nix @@ -13,14 +13,14 @@ buildPythonPackage rec { pname = "google-cloud-resource-manager"; - version = "1.10.4"; + version = "1.11.0"; format = "setuptools"; - disabled = pythonOlder "3.6"; + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-RWsl3do9TNJ0iKcnNrvDrwTXE64v42VcAbZqM50o1nk="; + hash = "sha256-pkumu1lWNOzSRyuLAyLo8BKnYyd1Zlmi3enzktf6GvI="; }; propagatedBuildInputs = [ @@ -48,8 +48,8 @@ buildPythonPackage rec { meta = with lib; { description = "Google Cloud Resource Manager API client library"; - homepage = "https://github.com/googleapis/python-resource-manager"; - changelog = "https://github.com/googleapis/python-resource-manager/blob/v${version}/CHANGELOG.md"; + homepage = "https://github.com/googleapis/google-cloud-python/tree/main/packages/google-cloud-resource-manager"; + changelog = "https://github.com/googleapis/google-cloud-python/blob/google-cloud-resource-manager-v${version}/packages/google-cloud-resource-manager/CHANGELOG.md"; license = licenses.asl20; maintainers = with maintainers; [ ]; }; diff --git a/pkgs/development/python-modules/google-cloud-runtimeconfig/default.nix b/pkgs/development/python-modules/google-cloud-runtimeconfig/default.nix index 781218fa7a206..915f00961bcad 100644 --- a/pkgs/development/python-modules/google-cloud-runtimeconfig/default.nix +++ b/pkgs/development/python-modules/google-cloud-runtimeconfig/default.nix @@ -10,14 +10,14 @@ buildPythonPackage rec { pname = "google-cloud-runtimeconfig"; - version = "0.33.3"; + version = "0.34.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-4sv5wua03gLd9YqwdD8P/VaKv4LcacB42fK5hUAt2vQ="; + hash = "sha256-hyxvTChxCGC6YjjvYGqaJDvgBbve7EjzfPELl+LB2D8="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/google-cloud-secret-manager/default.nix b/pkgs/development/python-modules/google-cloud-secret-manager/default.nix index 5bb5940f55a42..6901c9dc3107a 100644 --- a/pkgs/development/python-modules/google-cloud-secret-manager/default.nix +++ b/pkgs/development/python-modules/google-cloud-secret-manager/default.nix @@ -12,14 +12,14 @@ buildPythonPackage rec { pname = "google-cloud-secret-manager"; - version = "2.16.4"; + version = "2.18.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-Nx3HL5FFrzI+ioE8jlA4DmrEvWpdvNQtzzFi2PN+UIA="; + hash = "sha256-Tkmb0z/3rv8nG9Z0h+IdVAQpeobcSHPuhh1jewGzC04="; }; propagatedBuildInputs = [ @@ -42,8 +42,8 @@ buildPythonPackage rec { meta = with lib; { description = "Secret Manager API API client library"; - homepage = "https://github.com/googleapis/python-secret-manager"; - changelog = "https://github.com/googleapis/python-secret-manager/blob/v${version}/CHANGELOG.md"; + homepage = "https://github.com/googleapis/google-cloud-python/tree/main/packages/google-cloud-secret-manager"; + changelog = "https://github.com/googleapis/google-cloud-python/blob/google-cloud-secret-manager-v${version}/packages/google-cloud-secret-manager/CHANGELOG.md"; license = licenses.asl20; maintainers = with maintainers; [ siriobalmelli ]; }; diff --git a/pkgs/development/python-modules/google-cloud-spanner/default.nix b/pkgs/development/python-modules/google-cloud-spanner/default.nix index d7dcf9c3424ec..ab352fa62569c 100644 --- a/pkgs/development/python-modules/google-cloud-spanner/default.nix +++ b/pkgs/development/python-modules/google-cloud-spanner/default.nix @@ -1,5 +1,6 @@ { lib , buildPythonPackage +, deprecated , fetchPypi , google-api-core , google-cloud-core @@ -13,21 +14,27 @@ , pytestCheckHook , pythonOlder , sqlparse +, setuptools }: buildPythonPackage rec { pname = "google-cloud-spanner"; - version = "3.40.1"; - format = "setuptools"; + version = "3.41.0"; + pyproject = true; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-YWsHyGza5seLrSe4qznYznonNRHyuR/iYPFw2SZlPC4="; + hash = "sha256-jK2hHdYdxwsEmk/aDp7ArXZwZbhEloqIuLJ2ZwMs9YI="; }; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ + deprecated google-api-core google-cloud-core grpc-google-iam-v1 diff --git a/pkgs/development/python-modules/google-cloud-speech/default.nix b/pkgs/development/python-modules/google-cloud-speech/default.nix index 8fa7bc16d6ce7..a4f2ab9ae4b33 100644 --- a/pkgs/development/python-modules/google-cloud-speech/default.nix +++ b/pkgs/development/python-modules/google-cloud-speech/default.nix @@ -13,14 +13,14 @@ buildPythonPackage rec { pname = "google-cloud-speech"; - version = "2.23.0"; + version = "2.24.0"; pyproject = true; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-H4aDIHCF3cpsXgZIly+KBik30w5zqlVSDwgPSVMse/8="; + hash = "sha256-Z7x4xfCbeRPoCbinCrTwIAp9JIvfavFvA1c4/a5UbHQ="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/google-cloud-tasks/default.nix b/pkgs/development/python-modules/google-cloud-tasks/default.nix index c5762819af6a6..bc6cf42b27c7e 100644 --- a/pkgs/development/python-modules/google-cloud-tasks/default.nix +++ b/pkgs/development/python-modules/google-cloud-tasks/default.nix @@ -9,20 +9,25 @@ , pytest-asyncio , pytestCheckHook , pythonOlder +, setuptools }: buildPythonPackage rec { pname = "google-cloud-tasks"; - version = "2.15.0"; - format = "setuptools"; + version = "2.16.0"; + pyproject = true; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-SpmTjbARHVU3hkG1I1uY5r12S8jip+JN9wb4uGO98nw="; + hash = "sha256-oybkbzeqE4sW6RN5P7AFJV3rahTCykwJndQ8uAmhiCE="; }; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ google-api-core grpc-google-iam-v1 diff --git a/pkgs/development/python-modules/google-cloud-texttospeech/default.nix b/pkgs/development/python-modules/google-cloud-texttospeech/default.nix index f039e5870be35..09237f9afbcdc 100644 --- a/pkgs/development/python-modules/google-cloud-texttospeech/default.nix +++ b/pkgs/development/python-modules/google-cloud-texttospeech/default.nix @@ -12,14 +12,14 @@ buildPythonPackage rec { pname = "google-cloud-texttospeech"; - version = "2.15.0"; + version = "2.16.0"; format = "setuptools"; disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; - hash = "sha256-d4Y+1U94/NLhlMoRPJzF5+QLhzBszsG6MH5G3PgfBzc="; + hash = "sha256-flG/fsyx8DH/w49EF5ddckPZoVDvkPsz/SFI16CVWR8="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/google-cloud-trace/default.nix b/pkgs/development/python-modules/google-cloud-trace/default.nix index 98a62651013c8..8c6085685f71f 100644 --- a/pkgs/development/python-modules/google-cloud-trace/default.nix +++ b/pkgs/development/python-modules/google-cloud-trace/default.nix @@ -13,14 +13,14 @@ buildPythonPackage rec { pname = "google-cloud-trace"; - version = "1.12.0"; + version = "1.13.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-IvbMxHbOMQHUH7q86sP+/N/gV9KWez6OIMAmcTY6Uko="; + hash = "sha256-2oGGbqPLcPdMuSjVCG9yIV0moEToLUxjVFW22yHbRzc="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/google-cloud-videointelligence/default.nix b/pkgs/development/python-modules/google-cloud-videointelligence/default.nix index ef0a5971ebbb1..e8ac6fa628f59 100644 --- a/pkgs/development/python-modules/google-cloud-videointelligence/default.nix +++ b/pkgs/development/python-modules/google-cloud-videointelligence/default.nix @@ -13,14 +13,14 @@ buildPythonPackage rec { pname = "google-cloud-videointelligence"; - version = "2.12.0"; + version = "2.13.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-SwGUkyzSYEGZuIBbwQhpLmoqJZ9Hd1FrnLyXi4hx4pU="; + hash = "sha256-ODRF08xxjUrj6PMzfTlcYLqGrgV71OA0VHT44ktQZ4k="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/google-cloud-websecurityscanner/default.nix b/pkgs/development/python-modules/google-cloud-websecurityscanner/default.nix index d4c285c3f34ec..87372d6538457 100644 --- a/pkgs/development/python-modules/google-cloud-websecurityscanner/default.nix +++ b/pkgs/development/python-modules/google-cloud-websecurityscanner/default.nix @@ -12,14 +12,14 @@ buildPythonPackage rec { pname = "google-cloud-websecurityscanner"; - version = "1.13.0"; + version = "1.14.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-vktbTjzNYMa8otEGGq36fYOKcNuNasWql4SBWbk84Iw="; + hash = "sha256-tb8BCpQtEj/0/dGSqTf+c0V0NwGZYx8y0oEHpoJWqhM="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/govee-ble/default.nix b/pkgs/development/python-modules/govee-ble/default.nix index 6b5b23c6a8a87..5499af7a1f951 100644 --- a/pkgs/development/python-modules/govee-ble/default.nix +++ b/pkgs/development/python-modules/govee-ble/default.nix @@ -12,18 +12,23 @@ buildPythonPackage rec { pname = "govee-ble"; - version = "0.27.3"; - format = "pyproject"; + version = "0.31.0"; + pyproject = true; disabled = pythonOlder "3.9"; src = fetchFromGitHub { owner = "Bluetooth-Devices"; - repo = pname; + repo = "govee-ble"; rev = "refs/tags/v${version}"; - hash = "sha256-yMKZe2hEkBm9c/5QuFNQMVPsdHTx9lnEVysRlbntiVY="; + hash = "sha256-g4tOu4nrJx1DVk2KLfF6HIEM7vTkfBg2fd7R1j+Xwrk="; }; + postPatch = '' + substituteInPlace pyproject.toml \ + --replace " --cov=govee_ble --cov-report=term-missing:skip-covered" "" + ''; + nativeBuildInputs = [ poetry-core ]; @@ -39,11 +44,6 @@ buildPythonPackage rec { pytestCheckHook ]; - postPatch = '' - substituteInPlace pyproject.toml \ - --replace " --cov=govee_ble --cov-report=term-missing:skip-covered" "" - ''; - pythonImportsCheck = [ "govee_ble" ]; diff --git a/pkgs/development/python-modules/gpaw/default.nix b/pkgs/development/python-modules/gpaw/default.nix index e415c192511cf..be43eb55857dd 100644 --- a/pkgs/development/python-modules/gpaw/default.nix +++ b/pkgs/development/python-modules/gpaw/default.nix @@ -74,14 +74,14 @@ let in buildPythonPackage rec { pname = "gpaw"; - version = "23.9.1"; + version = "24.1.0"; format = "setuptools"; src = fetchFromGitLab { owner = "gpaw"; repo = pname; rev = version; - hash = "sha256-9nnK4ksTFATO6HexnxfMiih/yoY/noyJZXZOaDG/2kc="; + hash = "sha256-8eX50F124R46dGN2rJS/dDvPeDmEm7XpVyTiOAjMKyI="; }; # `inetutils` is required because importing `gpaw`, as part of diff --git a/pkgs/development/python-modules/gradio-pdf/default.nix b/pkgs/development/python-modules/gradio-pdf/default.nix index d2bbfecefdc38..f1758be6a76fc 100644 --- a/pkgs/development/python-modules/gradio-pdf/default.nix +++ b/pkgs/development/python-modules/gradio-pdf/default.nix @@ -10,13 +10,13 @@ buildPythonPackage rec { pname = "gradio-pdf"; - version = "0.0.3"; + version = "0.0.4"; format = "pyproject"; src = fetchPypi { pname = "gradio_pdf"; inherit version; - hash = "sha256-l9bcH/6paEdKk9Q7HM3ap9MI1Qi7rPZ/ucAibBUEPKI="; + hash = "sha256-lyZd8tH3SaTmE/7ooNaQJUYZRvjSOLx3+doWTCTXk9U="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/gradio/client.nix b/pkgs/development/python-modules/gradio/client.nix index e68f793f73012..1d7223e6a2485 100644 --- a/pkgs/development/python-modules/gradio/client.nix +++ b/pkgs/development/python-modules/gradio/client.nix @@ -94,6 +94,8 @@ buildPythonPackage rec { pythonImportsCheck = [ "gradio_client" ]; + __darwinAllowLocalNetworking = true; + meta = with lib; { homepage = "https://www.gradio.app/"; description = "Lightweight library to use any Gradio app as an API"; diff --git a/pkgs/development/python-modules/gradio/default.nix b/pkgs/development/python-modules/gradio/default.nix index 78e6f99505e3b..bead2da9dfd79 100644 --- a/pkgs/development/python-modules/gradio/default.nix +++ b/pkgs/development/python-modules/gradio/default.nix @@ -1,4 +1,5 @@ { lib +, stdenv , buildPythonPackage , fetchPypi , pythonOlder @@ -140,6 +141,9 @@ buildPythonPackage rec { preCheck = '' export HOME=$TMPDIR cat ${./conftest-skip-network-errors.py} >> test/conftest.py + '' + lib.optionalString stdenv.isDarwin '' + # OSError: [Errno 24] Too many open files + ulimit -n 4096 ''; disabledTests = [ diff --git a/pkgs/development/python-modules/griffe/default.nix b/pkgs/development/python-modules/griffe/default.nix index 3bbaf7e8ab356..3c2ebb0077130 100644 --- a/pkgs/development/python-modules/griffe/default.nix +++ b/pkgs/development/python-modules/griffe/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "griffe"; - version = "0.38.1"; + version = "0.40.0"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -21,7 +21,7 @@ buildPythonPackage rec { owner = "mkdocstrings"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-j0j13bJtHlPc00pjmfpg/QJKzYQQcyA+jE7q538Uu08="; + hash = "sha256-VUQmyNO2e4SoXzGbd751l7TtRgvaiWOr75gSGwKGPUI="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/grpcio-channelz/default.nix b/pkgs/development/python-modules/grpcio-channelz/default.nix index 4c66dcc990314..522bf49fafd9c 100644 --- a/pkgs/development/python-modules/grpcio-channelz/default.nix +++ b/pkgs/development/python-modules/grpcio-channelz/default.nix @@ -8,12 +8,12 @@ buildPythonPackage rec { pname = "grpcio-channelz"; - version = "1.60.0"; + version = "1.60.1"; format = "setuptools"; src = fetchPypi { inherit pname version; - hash = "sha256-TRTHMDUm50cmFJ0BX1zwd34xCVsuyejqp7hHc33LYKA="; + hash = "sha256-eAYWHTlyThrJ9vTumXPDeEcyk5OC8tfI12K073heF6A="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/grpcio-health-checking/default.nix b/pkgs/development/python-modules/grpcio-health-checking/default.nix index 573670a98c30c..7873404d65146 100644 --- a/pkgs/development/python-modules/grpcio-health-checking/default.nix +++ b/pkgs/development/python-modules/grpcio-health-checking/default.nix @@ -8,12 +8,12 @@ buildPythonPackage rec { pname = "grpcio-health-checking"; - version = "1.60.0"; + version = "1.60.1"; format = "setuptools"; src = fetchPypi { inherit pname version; - hash = "sha256-R4tTAHeBIP7Z9tE01ysVeln5wGaJeJIYy/9H+vyi8Rk="; + hash = "sha256-fC5Izp1b2xmtV7er40ONR+verVB4ZpORQHILPijGJbM="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/grpcio-reflection/default.nix b/pkgs/development/python-modules/grpcio-reflection/default.nix index dc4fb436fbb40..713fec8af4cdf 100644 --- a/pkgs/development/python-modules/grpcio-reflection/default.nix +++ b/pkgs/development/python-modules/grpcio-reflection/default.nix @@ -8,12 +8,12 @@ buildPythonPackage rec { pname = "grpcio-reflection"; - version = "1.60.0"; + version = "1.60.1"; format = "setuptools"; src = fetchPypi { inherit pname version; - hash = "sha256-P2wMc7qPINFCDF5y/E3QOJ+sNG7Y+zKijm4ZZ7RP/zU="; + hash = "sha256-v+1JYUE4IcEbTfECyesFWsjENUYm2dyxEKJz79TPfZg="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/gruut-ipa/default.nix b/pkgs/development/python-modules/gruut-ipa/default.nix index 26a7223b97e72..bca9611b7e219 100644 --- a/pkgs/development/python-modules/gruut-ipa/default.nix +++ b/pkgs/development/python-modules/gruut-ipa/default.nix @@ -22,7 +22,7 @@ buildPythonPackage rec { postPatch = '' patchShebangs bin/* substituteInPlace bin/speak-ipa \ - --replace '${"\${src_dir}:"}' "$out/lib/${python.libPrefix}/site-packages:" \ + --replace '${"\${src_dir}:"}' "$out/${python.sitePackages}:" \ --replace "do espeak" "do ${espeak}/bin/espeak" ''; diff --git a/pkgs/development/python-modules/gsd/default.nix b/pkgs/development/python-modules/gsd/default.nix index 3040102f87732..54062ec39f14a 100644 --- a/pkgs/development/python-modules/gsd/default.nix +++ b/pkgs/development/python-modules/gsd/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "gsd"; - version = "3.2.0"; + version = "3.2.1"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "glotzerlab"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-ceoHHEX44DrVgatV2EIS6gT9oVZkAx6OTFMZG/x4q64="; + hash = "sha256-huMM98An/DG8PIVblS3b6AxF6vJ5IoKOs1f9kBnR3ik="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/gtimelog/default.nix b/pkgs/development/python-modules/gtimelog/default.nix deleted file mode 100644 index 6d6accc642a8b..0000000000000 --- a/pkgs/development/python-modules/gtimelog/default.nix +++ /dev/null @@ -1,60 +0,0 @@ -{ lib, fetchFromGitHub, makeWrapper -, glibcLocales, gobject-introspection, gtk3, libsoup, libsecret -, buildPythonPackage, python -, pygobject3, freezegun, mock -}: - -buildPythonPackage rec { - pname = "gtimelog"; - version = "unstable-2020-05-16"; - format = "setuptools"; - - src = fetchFromGitHub { - owner = pname; - repo = pname; - rev = "80682ddbf9e0d68b8c67257289784f3b49b543d8"; - sha256 = "0qv2kv7vc3qqlzxsisgg31cmrkkqgnmxspbj10c5fhdmwzzwi0i9"; - }; - - nativeBuildInputs = [ makeWrapper gobject-introspection ]; - buildInputs = [ - glibcLocales gtk3 libsoup libsecret - ]; - - propagatedBuildInputs = [ - pygobject3 freezegun mock - ]; - - checkPhase = '' - substituteInPlace runtests --replace "/usr/bin/env python3" "${python.interpreter}" - ./runtests - ''; - - pythonImportsCheck = [ "gtimelog" ]; - - preFixup = '' - wrapProgram $out/bin/gtimelog \ - --prefix GI_TYPELIB_PATH : "$GI_TYPELIB_PATH" \ - --prefix LD_LIBRARY_PATH ":" "${gtk3.out}/lib" \ - ''; - - meta = with lib; { - description = "A time tracking app"; - longDescription = '' - GTimeLog is a small time tracking application for GNOME. - It's main goal is to be as unintrusive as possible. - - To run gtimelog successfully on a system that does not have full GNOME 3 - installed, the following NixOS options should be set: - - programs.dconf.enable = true; - - services.gnome.gnome-keyring.enable = true; - - In addition, the following packages should be added to the environment: - - gnome.adwaita-icon-theme - - gnome.dconf - ''; - homepage = "https://gtimelog.org/"; - license = licenses.gpl2Plus; - maintainers = with maintainers; [ oxzi ]; - }; -} diff --git a/pkgs/development/python-modules/gtts/default.nix b/pkgs/development/python-modules/gtts/default.nix index 8ae5eb4702804..0b08a400888fd 100644 --- a/pkgs/development/python-modules/gtts/default.nix +++ b/pkgs/development/python-modules/gtts/default.nix @@ -15,14 +15,14 @@ buildPythonPackage rec { pname = "gtts"; - version = "2.5.0"; + version = "2.5.1"; format = "pyproject"; src = fetchFromGitHub { owner = "pndurette"; repo = "gTTS"; rev = "refs/tags/v${version}"; - hash = "sha256-eNBgUP1lXZCr4dx3wNfWS6nFf93C1oZXpkPDtKDCr9Y="; + hash = "sha256-CCxD73fpHGsO4zSifWLQtgDkbPvPEnA2357umhOCNoI="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/gurobipy/linux.nix b/pkgs/development/python-modules/gurobipy/linux.nix index e9a72cbb5cba7..a7c519406e74f 100644 --- a/pkgs/development/python-modules/gurobipy/linux.nix +++ b/pkgs/development/python-modules/gurobipy/linux.nix @@ -16,7 +16,7 @@ buildPythonPackage { postFixup = '' patchelf --set-rpath $out/lib \ - $out/lib/${python.libPrefix}/site-packages/gurobipy/gurobipy.so + $out/${python.sitePackages}/gurobipy/gurobipy.so ''; meta = with lib; { diff --git a/pkgs/development/python-modules/gvm-tools/default.nix b/pkgs/development/python-modules/gvm-tools/default.nix index 7cb78248c172a..6f273d09a62b4 100644 --- a/pkgs/development/python-modules/gvm-tools/default.nix +++ b/pkgs/development/python-modules/gvm-tools/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "gvm-tools"; - version = "23.11.0"; + version = "24.1.0"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -19,7 +19,7 @@ buildPythonPackage rec { owner = "greenbone"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-ZwImkTYYSscmGJYCpMWmZjToi41XjT4Znpo8j66BKIs="; + hash = "sha256-4uYOhsnprYybt5EB/b4LW8/9cn0Nahc1lYQ+DwPNlOU="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/habluetooth/default.nix b/pkgs/development/python-modules/habluetooth/default.nix index 759bd04b6ab53..9e347d9a1553f 100644 --- a/pkgs/development/python-modules/habluetooth/default.nix +++ b/pkgs/development/python-modules/habluetooth/default.nix @@ -1,31 +1,31 @@ { lib -, buildPythonPackage -, fetchFromGitHub -, cython -, poetry-core -, setuptools -, wheel , bleak -, pytestCheckHook , bleak-retry-connector , bluetooth-adapters , bluetooth-auto-recovery , bluetooth-data-tools +, buildPythonPackage +, cython +, fetchFromGitHub +, poetry-core +, pytestCheckHook , pythonOlder +, setuptools +, wheel }: buildPythonPackage rec { pname = "habluetooth"; - version = "2.0.2"; + version = "2.1.0"; pyproject = true; - disabled = pythonOlder "3.9"; + disabled = pythonOlder "3.10"; src = fetchFromGitHub { owner = "Bluetooth-Devices"; repo = "habluetooth"; rev = "refs/tags/v${version}"; - hash = "sha256-3HyFKg+JR48MQrWmOjOQV2qhVHRHLnJHvtvBajXPDMg="; + hash = "sha256-oPdKmaj2wKgOQw7QYwOQc8efcNtQiGryZgNJ+bbB6L8="; }; postPatch = '' diff --git a/pkgs/development/python-modules/hahomematic/default.nix b/pkgs/development/python-modules/hahomematic/default.nix index 9609365f7fef5..72e8595ddb5cb 100644 --- a/pkgs/development/python-modules/hahomematic/default.nix +++ b/pkgs/development/python-modules/hahomematic/default.nix @@ -18,7 +18,7 @@ buildPythonPackage rec { pname = "hahomematic"; - version = "2024.1.7"; + version = "2024.2.1"; pyproject = true; disabled = pythonOlder "3.11"; @@ -27,7 +27,7 @@ buildPythonPackage rec { owner = "danielperna84"; repo = "hahomematic"; rev = "refs/tags/${version}"; - hash = "sha256-98biJ/BXFZV55FMRvT8QexzWVB2rfF/YVa66+HU06mI="; + hash = "sha256-Q9cuazn07LCzCMkhnNl/h6QxrFBv4fybMaDi8zN7jy0="; }; __darwinAllowLocalNetworking = true; diff --git a/pkgs/development/python-modules/hatch-requirements-txt/default.nix b/pkgs/development/python-modules/hatch-requirements-txt/default.nix index a6246b3a4746a..9995966805050 100644 --- a/pkgs/development/python-modules/hatch-requirements-txt/default.nix +++ b/pkgs/development/python-modules/hatch-requirements-txt/default.nix @@ -8,14 +8,14 @@ buildPythonPackage rec { pname = "hatch-requirements-txt"; - version = "0.4.0"; + version = "0.4.1"; format = "pyproject"; src = fetchFromGitHub { owner = "repo-helper"; repo = "hatch-requirements-txt"; rev = "refs/tags/v${version}"; - hash = "sha256-qk+70o/41BLxCuz3SOXkGYSEmUZOG1oLYcFUmlarqmY="; + hash = "sha256-Kd3rDfTBn/t/NiSJMPkHRWD5solUF7MAN8EiZokxHrk="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/haversine/default.nix b/pkgs/development/python-modules/haversine/default.nix index 328af63b6e9e3..68f3940a382b1 100644 --- a/pkgs/development/python-modules/haversine/default.nix +++ b/pkgs/development/python-modules/haversine/default.nix @@ -4,22 +4,27 @@ , numpy , pytestCheckHook , pythonOlder +, setuptools }: buildPythonPackage rec { pname = "haversine"; - version = "2.8.0"; - format = "setuptools"; + version = "2.8.1"; + pyproject = true; disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "mapado"; - repo = pname; - rev = "v${version}"; - hash = "sha256-cwvTs/91eJhjmeuCQAUBgfnKuCiLEg1jSnrXfx9VWkI="; + repo = "haversine"; + rev = "refs/tags/v${version}"; + hash = "sha256-MKOg2awpamupvuXstiH7VoIY4ax+hy2h2cFXDFKJ2mA="; }; + nativeBuildInputs = [ + setuptools + ]; + nativeCheckInputs = [ numpy pytestCheckHook @@ -32,6 +37,7 @@ buildPythonPackage rec { meta = with lib; { description = "Python module the distance between 2 points on earth"; homepage = "https://github.com/mapado/haversine"; + changelog = "https://github.com/mapado/haversine/blob/v${version}/CHANGELOG.md"; license = with licenses; [ mit ]; maintainers = with maintainers; [ fab ]; }; diff --git a/pkgs/development/python-modules/heudiconv/default.nix b/pkgs/development/python-modules/heudiconv/default.nix index 3cdf1463cd575..e8ce48aab0ad3 100644 --- a/pkgs/development/python-modules/heudiconv/default.nix +++ b/pkgs/development/python-modules/heudiconv/default.nix @@ -19,14 +19,14 @@ buildPythonPackage rec { pname = "heudiconv"; - version = "1.0.0"; + version = "1.0.1"; format = "pyproject"; - disabled = pythonOlder "3.7"; + disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; - hash = "sha256-cW6G2NtPZiyqqJ3w9a3Y/6blEaXtR9eGG5epPknimsw="; + hash = "sha256-KMEvuxRFFbnyAez+cpcHKDDXdrHfeZcqlGNwy8RWTxg="; }; postPatch = '' diff --git a/pkgs/development/python-modules/hg-commitsigs/default.nix b/pkgs/development/python-modules/hg-commitsigs/default.nix index a97c2be2b98cb..7a97bff33316b 100644 --- a/pkgs/development/python-modules/hg-commitsigs/default.nix +++ b/pkgs/development/python-modules/hg-commitsigs/default.nix @@ -20,9 +20,9 @@ stdenv.mkDerivation rec { dontBuild = true; installPhase = '' - mkdir -p $out/lib/${python.libPrefix}/site-packages/hgext3rd/ + mkdir -p $out/${python.sitePackages}/hgext3rd/ install -D $src/commitsigs.py \ - $out/lib/${python.libPrefix}/site-packages/hgext3rd/ + $out/${python.sitePackages}/hgext3rd/ ''; meta = with lib; { diff --git a/pkgs/development/python-modules/hg-git/default.nix b/pkgs/development/python-modules/hg-git/default.nix index e2b8420911539..1e1803c9061fa 100644 --- a/pkgs/development/python-modules/hg-git/default.nix +++ b/pkgs/development/python-modules/hg-git/default.nix @@ -9,14 +9,14 @@ buildPythonPackage rec { pname = "hg-git"; - version = "1.0.3"; + version = "1.1.0"; format = "pyproject"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-HuFwRW/SuGrzMX9bttdqztFRB19dZZNF5Y8+e9gAQWw="; + hash = "sha256-btEamGLqCC5PRigxHbe49/bnJNVGm6Czf852JaAdB38="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/hishel/default.nix b/pkgs/development/python-modules/hishel/default.nix new file mode 100644 index 0000000000000..de75f1e46b17f --- /dev/null +++ b/pkgs/development/python-modules/hishel/default.nix @@ -0,0 +1,74 @@ +{ lib +, anysqlite +, buildPythonPackage +, fetchFromGitHub +, hatch-fancy-pypi-readme +, hatchling +, httpx +, pytest-asyncio +, pytestCheckHook +, pythonOlder +, pyyaml +, redis +, trio +}: + +buildPythonPackage rec { + pname = "hishel"; + version = "0.0.22"; + pyproject = true; + + disabled = pythonOlder "3.8"; + + src = fetchFromGitHub { + owner = "karpetrosyan"; + repo = "hishel"; + rev = "refs/tags/${version}"; + hash = "sha256-2GboU1J0jvZUz20+KpDYnfDqc+qi0tmlypbWeOoYjX0="; + }; + + nativeBuildInputs = [ + hatch-fancy-pypi-readme + hatchling + ]; + + propagatedBuildInputs = [ + httpx + ]; + + passthru.optional-dependencies = { + redis = [ + redis + ]; + sqlite = [ + anysqlite + ]; + yaml = [ + pyyaml + ]; + }; + + nativeCheckInputs = [ + pytest-asyncio + pytestCheckHook + trio + ] ++ lib.flatten (builtins.attrValues passthru.optional-dependencies); + + pythonImportsCheck = [ + "hishel" + ]; + + disabledTests = [ + # Tests require a running Redis instance + "test_redis" + ]; + + meta = with lib; { + description = "HTTP Cache implementation for HTTPX and HTTP Core"; + homepage = "https://github.com/karpetrosyan/hishel"; + changelog = "https://github.com/karpetrosyan/hishel/blob/${version}/CHANGELOG.md"; + license = licenses.bsd3; + maintainers = with maintainers; [ fab ]; + }; +} + diff --git a/pkgs/development/python-modules/home-assistant-bluetooth/default.nix b/pkgs/development/python-modules/home-assistant-bluetooth/default.nix index eb43493f25e74..8d58ea765509f 100644 --- a/pkgs/development/python-modules/home-assistant-bluetooth/default.nix +++ b/pkgs/development/python-modules/home-assistant-bluetooth/default.nix @@ -18,10 +18,10 @@ buildPythonPackage rec { pname = "home-assistant-bluetooth"; - version = "1.11.0"; + version = "1.12.0"; pyproject = true; - disabled = pythonOlder "3.10"; + disabled = pythonOlder "3.11"; src = fetchFromGitHub { owner = "home-assistant-libs"; diff --git a/pkgs/development/python-modules/homeconnect/default.nix b/pkgs/development/python-modules/homeconnect/default.nix index edf600921f1aa..296fb482c16d9 100644 --- a/pkgs/development/python-modules/homeconnect/default.nix +++ b/pkgs/development/python-modules/homeconnect/default.nix @@ -10,14 +10,14 @@ buildPythonPackage rec { pname = "homeconnect"; - version = "0.7.2"; + version = "0.7.4"; format = "pyproject"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-wCx8Jh3NBTnYI+essH9toacjUaT4fS61SaAAZDCYZ4g="; + hash = "sha256-lkal6Dy4cRRZ893I3/jyQ3+sDZMrHN0UMGff0ab4pvk="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/homematicip/default.nix b/pkgs/development/python-modules/homematicip/default.nix index f0260f04d3c88..ca5355fcb9a86 100644 --- a/pkgs/development/python-modules/homematicip/default.nix +++ b/pkgs/development/python-modules/homematicip/default.nix @@ -11,24 +11,31 @@ , pytest-aiohttp , pytest-asyncio , requests +, setuptools +, setuptools-scm , websocket-client , websockets }: buildPythonPackage rec { pname = "homematicip"; - version = "1.0.16"; - format = "setuptools"; + version = "1.1.0"; + pyproject = true; - disabled = pythonOlder "3.8"; + disabled = pythonOlder "3.10"; src = fetchFromGitHub { owner = "hahn-th"; repo = "homematicip-rest-api"; rev = "refs/tags/${version}"; - hash = "sha256-rvjdhsvGYllVeenVkU/ikwil4OVHPRIaXs+85q0pM/w="; + hash = "sha256-tx7/amXG3rLdUFgRPQcuf57qkBLAPxPWjLGSO7MrcWU="; }; + nativeBuildInputs = [ + setuptools + setuptools-scm + ]; + propagatedBuildInputs = [ aenum aiohttp diff --git a/pkgs/development/python-modules/hstspreload/default.nix b/pkgs/development/python-modules/hstspreload/default.nix index 105e410968d0d..badfd107962d5 100644 --- a/pkgs/development/python-modules/hstspreload/default.nix +++ b/pkgs/development/python-modules/hstspreload/default.nix @@ -7,7 +7,7 @@ buildPythonPackage rec { pname = "hstspreload"; - version = "2024.1.5"; + version = "2024.2.1"; pyproject = true; disabled = pythonOlder "3.6"; @@ -16,7 +16,7 @@ buildPythonPackage rec { owner = "sethmlarson"; repo = "hstspreload"; rev = "refs/tags/${version}"; - hash = "sha256-sf0Dsl6zH64O3Y8jns10jAE5faaJSRAu4M5JQ4JBKh0="; + hash = "sha256-e0PQpnzYWl8IMtLFdnYPMCBioriumc3vc1ExRjCYoc8="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/http-ece/default.nix b/pkgs/development/python-modules/http-ece/default.nix index 16f8fa23c3284..83719397fda90 100644 --- a/pkgs/development/python-modules/http-ece/default.nix +++ b/pkgs/development/python-modules/http-ece/default.nix @@ -4,11 +4,11 @@ buildPythonPackage rec { pname = "http_ece"; - version = "1.1.0"; + version = "1.2.0"; src = fetchPypi { inherit pname version; - sha256 = "1y5ln09ji4dwpzhxr77cggk02kghq7lql60a6969a5n2lwpvqblk"; + sha256 = "sha256-tZIPjvuOG1+wJXE+Ozb9pUM2JiAQY0sm3B+Y+F0es94="; }; propagatedBuildInputs = [ cryptography ] diff --git a/pkgs/development/python-modules/http-sf/default.nix b/pkgs/development/python-modules/http-sf/default.nix new file mode 100644 index 0000000000000..f9ebde2b2b031 --- /dev/null +++ b/pkgs/development/python-modules/http-sf/default.nix @@ -0,0 +1,45 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, pythonOlder +, setuptools +, typing-extensions +}: + +buildPythonPackage rec { + pname = "http-sf"; + version = "1.0.1"; + pyproject = true; + + disabled = pythonOlder "3.9"; + + src = fetchFromGitHub { + owner = "mnot"; + repo = "http-sf"; + rev = "refs/tags/v${version}"; + hash = "sha256-8xK8/IVrhqMDgkxZY10QqSGswCrttc29FZLCntmSUQ4="; + }; + + nativeBuildInputs = [ + setuptools + ]; + + propagatedBuildInputs = [ + typing-extensions + ]; + + # Tests require external data (https://github.com/httpwg/structured-field-tests) + doCheck = false; + + pythonImportsCheck = [ + "http_sf" + ]; + + meta = with lib; { + description = "Module to parse and serialise HTTP structured field values"; + homepage = "https://github.com/mnot/http-sf"; + changelog = "https://github.com/mnot/http-sf/releases/tag/v${version}"; + license = licenses.mit; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/http-sfv/default.nix b/pkgs/development/python-modules/http-sfv/default.nix index 55b318ff40ded..205b9c7423dd9 100644 --- a/pkgs/development/python-modules/http-sfv/default.nix +++ b/pkgs/development/python-modules/http-sfv/default.nix @@ -8,8 +8,8 @@ buildPythonPackage rec { pname = "http-sfv"; - version = "0.9.8"; - format = "pyproject"; + version = "0.9.9"; + pyproject = true; disabled = pythonOlder "3.7"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "mnot"; repo = "http_sfv"; rev = "http_sfv-${version}"; - hash = "sha256-zl0Rk4QbzCVmYZ6TnVq+C+oe27Imz5fEQY9Fco5lo5s="; + hash = "sha256-xf9bGDfsEcQnFQ2b1bLRGYug+H4e5jeV/LJstQtp6Bw="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/httpie-ntlm/default.nix b/pkgs/development/python-modules/httpie-ntlm/default.nix index 22a995ebd24b9..cbf3b29bcf03e 100644 --- a/pkgs/development/python-modules/httpie-ntlm/default.nix +++ b/pkgs/development/python-modules/httpie-ntlm/default.nix @@ -2,7 +2,7 @@ , buildPythonPackage , fetchPypi , httpie -, requests_ntlm +, requests-ntlm }: buildPythonPackage rec { @@ -15,7 +15,7 @@ buildPythonPackage rec { sha256 = "b1f757180c0bd60741ea16cf91fc53d47df402a5c287c4a61a14b335ea0552b3"; }; - propagatedBuildInputs = [ httpie requests_ntlm ]; + propagatedBuildInputs = [ httpie requests-ntlm ]; # Package have no tests doCheck = false; diff --git a/pkgs/development/python-modules/huggingface-hub/default.nix b/pkgs/development/python-modules/huggingface-hub/default.nix index a15a8988a7900..17ad769329c73 100644 --- a/pkgs/development/python-modules/huggingface-hub/default.nix +++ b/pkgs/development/python-modules/huggingface-hub/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "huggingface-hub"; - version = "0.19.4"; + version = "0.20.3"; format = "setuptools"; disabled = pythonOlder "3.8"; @@ -22,7 +22,7 @@ buildPythonPackage rec { owner = "huggingface"; repo = "huggingface_hub"; rev = "refs/tags/v${version}"; - hash = "sha256-bK/Cg+ZFhf9TrTVlDU35cLMDuTmdH4bN/QuPVeUVDsI="; + hash = "sha256-21Ay8RVS2vtQIh4bBUxE8jFk6F+yeFBJ3XgvRRNtNgI="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/huum/default.nix b/pkgs/development/python-modules/huum/default.nix index 72f65940a5e33..42a44a04a9eb7 100644 --- a/pkgs/development/python-modules/huum/default.nix +++ b/pkgs/development/python-modules/huum/default.nix @@ -4,7 +4,6 @@ , fetchFromGitHub , mashumaro , poetry-core -, pydantic , pytest-asyncio , pytestCheckHook , pythonOlder @@ -12,7 +11,7 @@ buildPythonPackage rec { pname = "huum"; - version = "0.7.9"; + version = "0.7.10"; pyproject = true; disabled = pythonOlder "3.11"; @@ -21,7 +20,7 @@ buildPythonPackage rec { owner = "frwickst"; repo = "pyhuum"; rev = "refs/tags/${version}"; - hash = "sha256-wIroT1eMO9VXsPWQkpSBEVN/nR4pg2/Eo4ms81qMaew="; + hash = "sha256-INW6d/Zc5UZZOgN6wW+Xbm/wH1K/V6bviu3mID1R+BY="; }; nativeBuildInputs = [ @@ -48,6 +47,5 @@ buildPythonPackage rec { changelog = "https://github.com/frwickst/pyhuum/releases/tag/${version}"; license = with licenses; [ mit ]; maintainers = with maintainers; [ fab ]; - broken = versionAtLeast pydantic.version "2"; }; } diff --git a/pkgs/development/python-modules/hvac/default.nix b/pkgs/development/python-modules/hvac/default.nix index 5f15e359f35e2..42f09f7266cc2 100644 --- a/pkgs/development/python-modules/hvac/default.nix +++ b/pkgs/development/python-modules/hvac/default.nix @@ -9,14 +9,14 @@ buildPythonPackage rec { pname = "hvac"; - version = "2.0.0"; + version = "2.1.0"; format = "pyproject"; disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; - hash = "sha256-alHLmg0i/hPoJMsLChzi7qy5zmr2i30bZoniXsG+yvU="; + hash = "sha256-tIvNoRpKsKe2xHIyx7p8h/2jGK4tSnZigAxGWnh0KJQ="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/hvplot/default.nix b/pkgs/development/python-modules/hvplot/default.nix index 29a14301ffd6c..ded23a070c12f 100644 --- a/pkgs/development/python-modules/hvplot/default.nix +++ b/pkgs/development/python-modules/hvplot/default.nix @@ -10,14 +10,14 @@ buildPythonPackage rec { pname = "hvplot"; - version = "0.9.1"; + version = "0.9.2"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - hash = "sha256-KB0YmiEtJkGT9446k079oWqTwBZMSFTakzW0LuBlazo="; + hash = "sha256-moyekkkTmqo97l8c6g+TzzY3TReemGcF/N3CuSxHB5M="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/hwi/default.nix b/pkgs/development/python-modules/hwi/default.nix index 046dbc7bb4ff9..0f4c21e86e7c9 100644 --- a/pkgs/development/python-modules/hwi/default.nix +++ b/pkgs/development/python-modules/hwi/default.nix @@ -15,7 +15,7 @@ buildPythonPackage rec { pname = "hwi"; - version = "2.3.1"; + version = "2.4.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -24,7 +24,7 @@ buildPythonPackage rec { owner = "bitcoin-core"; repo = "HWI"; rev = "refs/tags/${version}"; - hash = "sha256-V4BWB4mCONQ8kjAy6ySonAbCUTaKpBTvhSnHmoH8TQM="; + hash = "sha256-a1ppYDuY7CtNrKSvuAofS79nvDaYUMIm4FCHiiQYrtQ="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/hyperscan/default.nix b/pkgs/development/python-modules/hyperscan/default.nix index 342dda967cfee..51ea23baf4a29 100644 --- a/pkgs/development/python-modules/hyperscan/default.nix +++ b/pkgs/development/python-modules/hyperscan/default.nix @@ -13,14 +13,14 @@ buildPythonPackage rec { pname = "hyperscan"; - version = "0.6.0"; + version = "0.7.0"; pyproject = true; src = fetchFromGitHub { owner = "darvid"; repo = "python-hyperscan"; - rev = "v${version}"; - hash = "sha256-6PoV9rY9CkXkAMWN2QCnfU4S0OJD/6bzkqFgvEVqNjo="; + rev = "refs/tags/v${version}"; + hash = "sha256-XIsYBu2YPbSIZGIhJjPap1ymg7cr0+ozwZtpOj8GFm8="; }; buildInputs = [ diff --git a/pkgs/development/python-modules/ibm-cloud-sdk-core/default.nix b/pkgs/development/python-modules/ibm-cloud-sdk-core/default.nix index efa362c6fdd0b..5d27b9d490e16 100644 --- a/pkgs/development/python-modules/ibm-cloud-sdk-core/default.nix +++ b/pkgs/development/python-modules/ibm-cloud-sdk-core/default.nix @@ -12,14 +12,14 @@ buildPythonPackage rec { pname = "ibm-cloud-sdk-core"; - version = "3.18.2"; + version = "3.19.1"; pyproject = true; disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; - hash = "sha256-0gjISrKELopSMEuZHL8fy8q7rMuMqzATkP+c4Y8I+9A="; + hash = "sha256-oPDcQSWNWG9wauSVW7srXN85+UeF6Q0CRlaSyqh2W/Q="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/icalevents/default.nix b/pkgs/development/python-modules/icalevents/default.nix index f8f211b65993c..41b6f1bd34f72 100644 --- a/pkgs/development/python-modules/icalevents/default.nix +++ b/pkgs/development/python-modules/icalevents/default.nix @@ -4,6 +4,7 @@ , pythonOlder , pytestCheckHook , poetry-core +, pythonRelaxDepsHook , datetime , httplib2 , icalendar @@ -27,6 +28,7 @@ buildPythonPackage rec { nativeBuildInputs = [ poetry-core + pythonRelaxDepsHook ]; propagatedBuildInputs = [ @@ -37,6 +39,13 @@ buildPythonPackage rec { pytz ]; + pythonRelaxDeps = [ + "datetime" + "httplib2" + "icalendar" + "pytz" + ]; + nativeCheckInputs = [ pytestCheckHook ]; diff --git a/pkgs/development/python-modules/ics/default.nix b/pkgs/development/python-modules/ics/default.nix index 7b732d589fc00..f6e86242c612f 100644 --- a/pkgs/development/python-modules/ics/default.nix +++ b/pkgs/development/python-modules/ics/default.nix @@ -1,17 +1,20 @@ { lib +, arrow +, attrs , buildPythonPackage , fetchFromGitHub +, pytest-flakes +, pytestCheckHook , pythonOlder +, setuptools , tatsu -, arrow -, pytestCheckHook -, pytest-flakes }: buildPythonPackage rec { pname = "ics"; version = "0.7.2"; - format = "setuptools"; + pyproject = true; + disabled = pythonOlder "3.6"; src = fetchFromGitHub { @@ -21,7 +24,12 @@ buildPythonPackage rec { hash = "sha256-hdtnET7YfSb85+TGwpwzoxOfxPT7VSj9eKSiV6AXUS8="; }; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ + attrs arrow tatsu ]; @@ -45,7 +53,9 @@ buildPythonPackage rec { "test_many_lines" ]; - pythonImportsCheck = [ "ics" ]; + pythonImportsCheck = [ + "ics" + ]; meta = with lib; { description = "Pythonic and easy iCalendar library (RFC 5545)"; @@ -53,7 +63,7 @@ buildPythonPackage rec { Ics.py is a pythonic and easy iCalendar library. Its goals are to read and write ics data in a developer friendly way. ''; - homepage = "http://icspy.readthedocs.org/en/stable/"; + homepage = "http://icspy.readthedocs.org/"; changelog = "https://github.com/ics-py/ics-py/releases/tag/v${version}"; license = licenses.asl20; maintainers = with maintainers; [ ]; diff --git a/pkgs/development/python-modules/imbalanced-learn/default.nix b/pkgs/development/python-modules/imbalanced-learn/default.nix index 1ef8fea6a1004..585e043e4eb38 100644 --- a/pkgs/development/python-modules/imbalanced-learn/default.nix +++ b/pkgs/development/python-modules/imbalanced-learn/default.nix @@ -1,43 +1,72 @@ { lib , buildPythonPackage , fetchPypi -, isPy27 +, pythonOlder +, setuptools +, joblib +, keras +, numpy , pandas -, pytestCheckHook , scikit-learn +, scipy +, tensorflow +, threadpoolctl +, pytest-xdist +, pytestCheckHook }: buildPythonPackage rec { pname = "imbalanced-learn"; - version = "0.11.0"; - format = "setuptools"; - disabled = isPy27; # scikit-learn>=0.21 doesn't work on python2 + version = "0.12.0"; + pyproject = true; + + disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; - hash = "sha256-dYKuiFjm2wuS/vl90IZgoYKX7hKNeMKr3ABri9hrj9w="; + hash = "sha256-uczZqqMChpkHnUOm1Nn8nQOfVTdnM7Mfh8fZsSXcwWU="; }; - propagatedBuildInputs = [ scikit-learn ]; + nativeBuildInputs = [ + setuptools + ]; + + propagatedBuildInputs = [ + joblib + numpy + scikit-learn + scipy + threadpoolctl + ]; + + passthru.optional-dependencies = { + optional = [ + keras + pandas + tensorflow + ]; + }; + + pythonImportsCheck = [ + "imblearn" + ]; + nativeCheckInputs = [ pytestCheckHook pandas ]; + preCheck = '' export HOME=$TMPDIR ''; - disabledTests = [ - "estimator" - "classification" - "_generator" - "show_versions" - "test_make_imbalanced_iris" - "test_rusboost[SAMME.R]" - - # https://github.com/scikit-learn-contrib/imbalanced-learn/issues/824 - "ValueDifferenceMetric" + + disabledTestPaths = [ + # require tensorflow and keras, but we don't want to + # add them to nativeCheckInputs just for this tests + "imblearn/keras/_generator.py" ]; meta = with lib; { description = "Library offering a number of re-sampling techniques commonly used in datasets showing strong between-class imbalance"; homepage = "https://github.com/scikit-learn-contrib/imbalanced-learn"; + changelog = "https://github.com/scikit-learn-contrib/imbalanced-learn/releases/tag/${version}"; license = licenses.mit; maintainers = [ maintainers.rmcgibbo ]; }; diff --git a/pkgs/development/python-modules/img2pdf/default.nix b/pkgs/development/python-modules/img2pdf/default.nix index 1a69525d84388..2dc389f70ecc1 100644 --- a/pkgs/development/python-modules/img2pdf/default.nix +++ b/pkgs/development/python-modules/img2pdf/default.nix @@ -12,7 +12,7 @@ , exiftool , ghostscript , imagemagick -, mupdf +, mupdf-headless , netpbm , numpy , poppler_utils @@ -74,7 +74,7 @@ buildPythonPackage rec { exiftool ghostscript imagemagick - mupdf + mupdf-headless netpbm numpy poppler_utils diff --git a/pkgs/development/python-modules/iminuit/default.nix b/pkgs/development/python-modules/iminuit/default.nix index 3969b1c9ca51a..675a751f00967 100644 --- a/pkgs/development/python-modules/iminuit/default.nix +++ b/pkgs/development/python-modules/iminuit/default.nix @@ -20,14 +20,14 @@ buildPythonPackage rec { pname = "iminuit"; - version = "2.24.0"; + version = "2.25.0"; format = "pyproject"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - hash = "sha256-JatjHDyOAksbzHyW9mM4yqxUpKIyTVXx47pWF4FuRP0="; + hash = "sha256-e99ZRg05Dy0DznVcAVGy7D0gMwC8UVQb+Ch7Q8EgTGY="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/immutabledict/default.nix b/pkgs/development/python-modules/immutabledict/default.nix index 5d762be3fb860..6a066fad36d80 100644 --- a/pkgs/development/python-modules/immutabledict/default.nix +++ b/pkgs/development/python-modules/immutabledict/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "immutabledict"; - version = "4.0.0"; + version = "4.1.0"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "corenting"; repo = "immutabledict"; rev = "refs/tags/v${version}"; - hash = "sha256-z03s2mOJiMVnvLmeFJFgCRvkP+9VUcALiIoIPBAHUPw="; + hash = "sha256-c76apNW6nlxL9paevqKpPw5RpDLMpYnbVabCCIrW3pw="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/impacket/default.nix b/pkgs/development/python-modules/impacket/default.nix index 7c75422526011..ba387cd8d06c7 100644 --- a/pkgs/development/python-modules/impacket/default.nix +++ b/pkgs/development/python-modules/impacket/default.nix @@ -4,19 +4,21 @@ , dsinternals , fetchPypi , flask +, ldap3 , ldapdomaindump , pyasn1 , pycryptodomex , pyopenssl , pythonOlder , setuptools +, pytestCheckHook , six }: buildPythonPackage rec { pname = "impacket"; version = "0.11.0"; - format = "setuptools"; + pyproject = true; disabled = pythonOlder "3.7"; @@ -25,25 +27,36 @@ buildPythonPackage rec { hash = "sha256-7kA5tNKu3o9fZEeLxZ+qyGA2eWviTeqNwY8An7CQXko="; }; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ charset-normalizer dsinternals flask + ldap3 ldapdomaindump pyasn1 pycryptodomex pyopenssl - setuptools six ]; - # RecursionError: maximum recursion depth exceeded - doCheck = false; + nativeCheckInputs = [ + pytestCheckHook + ]; pythonImportsCheck = [ "impacket" ]; + disabledTestPaths = [ + # Skip all RPC related tests + "tests/dcerpc/" + "tests/SMB_RPC/" + ]; + meta = with lib; { description = "Network protocols Constructors and Dissectors"; homepage = "https://github.com/SecureAuthCorp/impacket"; diff --git a/pkgs/development/python-modules/indexed-gzip/default.nix b/pkgs/development/python-modules/indexed-gzip/default.nix index 73ad916f35f83..7b0bf177bf199 100644 --- a/pkgs/development/python-modules/indexed-gzip/default.nix +++ b/pkgs/development/python-modules/indexed-gzip/default.nix @@ -8,14 +8,14 @@ buildPythonPackage rec { pname = "indexed_gzip"; - version = "1.8.5"; + version = "1.8.7"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-h9JgYq9KxmknaRuMgq+5YWA8tUaFk+lclkqdNAnr/cI="; + hash = "sha256-dryq1LLC+lVHj/i+m60ubGGItlX5/clCnwNGrexI92I="; }; nativeBuildInputs = [ cython ]; diff --git a/pkgs/development/python-modules/influxdb-client/default.nix b/pkgs/development/python-modules/influxdb-client/default.nix index 8e0bd695c0f61..6fb8974642ee2 100644 --- a/pkgs/development/python-modules/influxdb-client/default.nix +++ b/pkgs/development/python-modules/influxdb-client/default.nix @@ -16,7 +16,7 @@ buildPythonPackage rec { pname = "influxdb-client"; - version = "1.39.0"; + version = "1.40.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -25,7 +25,7 @@ buildPythonPackage rec { owner = "influxdata"; repo = "influxdb-client-python"; rev = "refs/tags/v${version}"; - hash = "sha256-cj3qeT5wE/RqrwOW1MV9sVG+khxyRAO5438omqbKbmY="; + hash = "sha256-+I5DxcxNxIRDwtfYXLvXPl8Z3FKcSWyaYtv1KHT9QO4="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/inquirerpy/default.nix b/pkgs/development/python-modules/inquirerpy/default.nix index c5460abaf7b9e..37d08f41512f6 100644 --- a/pkgs/development/python-modules/inquirerpy/default.nix +++ b/pkgs/development/python-modules/inquirerpy/default.nix @@ -1,23 +1,19 @@ { lib , buildPythonPackage , fetchFromGitHub -, furo -, myst-parser , pfzy , poetry-core , prompt-toolkit , pytestCheckHook , pythonOlder -, sphinx -, sphinx-autobuild -, sphinx-copybutton }: buildPythonPackage rec { pname = "inquirerpy"; version = "0.3.4"; - format = "pyproject"; + pyproject = true; + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "kazhala"; @@ -51,11 +47,10 @@ buildPythonPackage rec { "tests/base/test_list.py" ]; - meta = with lib; { description = "Python port of Inquirer.js"; homepage = "https://github.com/kazhala/InquirerPy"; - changelog = "https://github.com/kazhala/InquirerPy/blob/${src.rev}/CHANGELOG.md"; + changelog = "https://github.com/kazhala/InquirerPy/blob/${version}/CHANGELOG.md"; license = licenses.mit; maintainers = with maintainers; [ fab ]; }; diff --git a/pkgs/development/python-modules/insteon-frontend-home-assistant/default.nix b/pkgs/development/python-modules/insteon-frontend-home-assistant/default.nix index 2a6e9f0556a9c..7c8536e1466ac 100644 --- a/pkgs/development/python-modules/insteon-frontend-home-assistant/default.nix +++ b/pkgs/development/python-modules/insteon-frontend-home-assistant/default.nix @@ -4,33 +4,22 @@ , fetchPypi , pythonOlder , setuptools -, wheel }: buildPythonPackage rec { pname = "insteon-frontend-home-assistant"; - version = "0.3.5-1"; - format = "pyproject"; + version = "0.5.0"; + pyproject = true; - disabled = pythonOlder "3.7"; + disabled = pythonOlder "3.10"; src = fetchPypi { inherit pname version; - hash = "sha256-R+P4pgKbLvf0mwpSDoujCvlJe/yS+nvSJ7ewLVOOg/0="; + hash = "sha256-NZwnx8tlXnsVCk4nvNjOg3cjSr2CnjqWcZG7xFTC2wA="; }; - patches = [ - # https://github.com/pyinsteon/insteon-panel/pull/33 - (fetchpatch { - name = "unpin-setuptools.patch"; - url = "https://github.com/pyinsteon/insteon-panel/commit/2297eb05668907edd03633f244e5876990e340c7.patch"; - hash = "sha256-kTu1+IwDrcdqelyK/vfhxw8MQBis5I1jag7YTytKQhs="; - }) - ]; - nativeBuildInputs = [ setuptools - wheel ]; # upstream has no tests diff --git a/pkgs/development/python-modules/ipwhois/default.nix b/pkgs/development/python-modules/ipwhois/default.nix index 676ec23081a6d..c6e50535bad40 100644 --- a/pkgs/development/python-modules/ipwhois/default.nix +++ b/pkgs/development/python-modules/ipwhois/default.nix @@ -3,33 +3,47 @@ , buildPythonPackage , dnspython , fetchFromGitHub +, fetchpatch , iana-etc , libredirect , pytestCheckHook , pythonOlder , pythonRelaxDepsHook +, setuptools }: buildPythonPackage rec { pname = "ipwhois"; version = "1.2.0"; - format = "setuptools"; + pyproject = true; disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "secynic"; - repo = pname; + repo = "ipwhois"; rev = "refs/tags/v${version}"; hash = "sha256-2CfRRHlIIaycUtzKeMBKi6pVPeBCb1nW3/1hoxQU1YM="; }; + patches = [ + # Use assertEqual instead of assertEquals, https://github.com/secynic/ipwhois/pull/316 + (fetchpatch { + name = "assert-equal.patch"; + url = "https://github.com/secynic/ipwhois/commit/fce2761354af99bc169e6cd08057e838fcc40f75.patch"; + hash = "sha256-7Ic4xWTAmklk6MvnZ/WsH9SW/4D9EG/jFKt5Wi89Xtc="; + }) + ]; + + __darwinAllowLocalNetworking = true; + pythonRelaxDeps = [ "dnspython" ]; nativeBuildInputs = [ pythonRelaxDepsHook + setuptools ]; propagatedBuildInputs = [ @@ -53,6 +67,8 @@ buildPythonPackage rec { disabledTestPaths = [ # Tests require network access "ipwhois/tests/online/" + # Stress test + "ipwhois/tests/stress/test_experimental.py" ]; disabledTests = [ diff --git a/pkgs/development/python-modules/ipykernel/default.nix b/pkgs/development/python-modules/ipykernel/default.nix index d96ab023c87f3..317f8a7fc2ebf 100644 --- a/pkgs/development/python-modules/ipykernel/default.nix +++ b/pkgs/development/python-modules/ipykernel/default.nix @@ -22,14 +22,14 @@ buildPythonPackage rec { pname = "ipykernel"; - version = "6.28.0"; + version = "6.29.0"; pyproject = true; disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; - hash = "sha256-acEUA9Jt5p3wIiWRb5FrN+pLmvQX2gqMgn+EMo2I5fM="; + hash = "sha256-td0wE8q3szDfcSiRyWzRq4aMJ6cVnmBvdiAV6b+M6z8="; }; # debugpy is optional, see https://github.com/ipython/ipykernel/pull/767 diff --git a/pkgs/development/python-modules/ipython-sql/default.nix b/pkgs/development/python-modules/ipython-sql/default.nix index 0aa7fa388c4f3..a87c359c967a0 100644 --- a/pkgs/development/python-modules/ipython-sql/default.nix +++ b/pkgs/development/python-modules/ipython-sql/default.nix @@ -1,32 +1,29 @@ { lib , buildPythonPackage -, fetchFromGitHub +, fetchPypi , pythonOlder +, setuptools , ipython , ipython-genutils -, pandas , prettytable -, pytest , sqlalchemy , sqlparse }: buildPythonPackage rec { pname = "ipython-sql"; - version = "0.4.0"; - format = "setuptools"; + version = "0.5.0"; + pyproject = true; disabled = pythonOlder "3.7"; - src = fetchFromGitHub { - owner = "catherinedevlin"; - repo = "ipython-sql"; - rev = "117764caf099d80100ed4b09fc004b55eed6f121"; - hash = "sha256-ScQihsvRSnC7VIgy8Tzi1z4x6KIZo0SAeLPvHAVdrfA="; + src = fetchPypi { + inherit pname version; + hash = "sha256-PbPOf5qV369Dh2+oCxa9u5oE3guhIELKsT6fWW/P/b4="; }; - postPatch = '' - substituteInPlace setup.py --replace 'prettytable<1' prettytable - ''; + nativeBuildInputs = [ + setuptools + ]; propagatedBuildInputs = [ ipython @@ -36,17 +33,8 @@ buildPythonPackage rec { sqlparse ]; - nativeCheckInputs = [ ipython pandas pytest ]; - - checkPhase = '' - runHook preCheck - - # running with ipython is required because the tests use objects available - # only inside of ipython, for example the global `get_ipython()` function - ipython -c 'import pytest; pytest.main()' - - runHook postCheck - ''; + # pypi tarball has no tests + doCheck = false; pythonImportsCheck = [ "sql" ]; diff --git a/pkgs/development/python-modules/iterative-telemetry/default.nix b/pkgs/development/python-modules/iterative-telemetry/default.nix index 670b473e61953..ed5066dcc5fad 100644 --- a/pkgs/development/python-modules/iterative-telemetry/default.nix +++ b/pkgs/development/python-modules/iterative-telemetry/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "iterative-telemtry"; - version = "0.0.7"; + version = "0.0.8"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -22,7 +22,7 @@ buildPythonPackage rec { owner = "iterative"; repo = "telemetry-python"; rev = "refs/tags/${version}"; - hash = "sha256-n67nc9a/Qrz2v1EYbHZb+pGhuMDqofUMpgfD/0BwqLM="; + hash = "sha256-jD1AyQTdz/NfTRpvEuTE/gUfgNIhNlnimuCks5ImhwA="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/jenkins-job-builder/default.nix b/pkgs/development/python-modules/jenkins-job-builder/default.nix index 863a7af192e78..19d6b9e333398 100644 --- a/pkgs/development/python-modules/jenkins-job-builder/default.nix +++ b/pkgs/development/python-modules/jenkins-job-builder/default.nix @@ -9,23 +9,16 @@ buildPythonPackage rec { pname = "jenkins-job-builder"; - version = "5.0.4"; + version = "6.0.0"; format = "setuptools"; src = fetchPypi { inherit pname version; - hash = "sha256-+zrsfyi4I8venFGMKXDMUq+9+f7y6IY59y1/OJDExGs="; + hash = "sha256-queP6RBpw32PXbpz6StIE6Pb7RNsm2O4tNarrDwb2cU="; }; postPatch = '' - # relax version constraint, https://storyboard.openstack.org/#!/story/2009723 - substituteInPlace requirements.txt --replace 'PyYAML>=3.10.0,<6' 'PyYAML>=3.10.0' - - # Allow building with setuptools from nixpkgs. - # Related: https://github.com/NixOS/nixpkgs/issues/238226. - substituteInPlace requirements.txt --replace 'setuptools<=65.7.0' 'setuptools' - - export HOME=$TMPDIR + export HOME=$(mktemp -d) ''; propagatedBuildInputs = [ pbr python-jenkins pyyaml six stevedore fasteners jinja2 ]; @@ -35,7 +28,7 @@ buildPythonPackage rec { meta = with lib; { description = "Jenkins Job Builder is a system for configuring Jenkins jobs using simple YAML files stored in Git"; - homepage = "https://docs.openstack.org/infra/jenkins-job-builder/"; + homepage = "https://jenkins-job-builder.readthedocs.io/en/latest/"; license = licenses.asl20; maintainers = with maintainers; [ ]; }; diff --git a/pkgs/development/python-modules/jinja2/default.nix b/pkgs/development/python-modules/jinja2/default.nix index 1b154f90d3864..1c260e37c7b0b 100644 --- a/pkgs/development/python-modules/jinja2/default.nix +++ b/pkgs/development/python-modules/jinja2/default.nix @@ -9,79 +9,83 @@ , pytestCheckHook , sphinxHook , pallets-sphinx-themes +, setuptools , sphinxcontrib-log-cabinet , sphinx-issues }: buildPythonPackage rec { - pname = "Jinja2"; - version = "3.1.2"; + pname = "jinja2"; + version = "3.1.3"; + pyproject = true; disabled = pythonOlder "3.7"; src = fetchPypi { - inherit pname version; - hash = "sha256-MTUacCpAip51laj8YVD8P0O7a/fjGXcMvA2535Q36FI="; + pname = "Jinja2"; + inherit version; + hash = "sha256-rIvWVE1Lssl5K/OhWegLuo/afwfoG8Ou1WVDLVklupA="; }; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ - babel markupsafe ]; + passthru.optional-dependencies = { + i18n = [ + babel + ]; + }; + # Multiple tests run out of stack space on 32bit systems with python2. # See https://github.com/pallets/jinja/issues/1158 doCheck = !stdenv.is32bit; nativeCheckInputs = [ pytestCheckHook - ]; - - pytestFlagsArray = [ - # Avoid failure due to deprecation warning - # Fixed in https://github.com/python/cpython/pull/28153 - # Remove after cpython 3.9.8 - "-p no:warnings" - ]; + ] ++ passthru.optional-dependencies.i18n; - passthru = { - doc = stdenv.mkDerivation { - # Forge look and feel of multi-output derivation as best as we can. - # - # Using 'outputs = [ "doc" ];' breaks a lot of assumptions. - name = "${pname}-${version}-doc"; - inherit src pname version; + passthru.doc = stdenv.mkDerivation { + # Forge look and feel of multi-output derivation as best as we can. + # + # Using 'outputs = [ "doc" ];' breaks a lot of assumptions. + name = "${pname}-${version}-doc"; + inherit src pname version; - patches = [ - # Fix import of "sphinxcontrib-log-cabinet" - ./patches/import-order.patch - ]; + patches = [ + # Fix import of "sphinxcontrib-log-cabinet" + ./patches/import-order.patch + ]; - postInstallSphinx = '' - mv $out/share/doc/* $out/share/doc/python$pythonVersion-$pname-$version - ''; + postInstallSphinx = '' + mv $out/share/doc/* $out/share/doc/python$pythonVersion-$pname-$version + ''; - nativeBuildInputs = [ - sphinxHook - sphinxcontrib-log-cabinet - pallets-sphinx-themes - sphinx-issues - ]; + nativeBuildInputs = [ + sphinxHook + sphinxcontrib-log-cabinet + pallets-sphinx-themes + sphinx-issues + ]; - inherit (python) pythonVersion; - inherit meta; - }; + inherit (python) pythonVersion; + inherit meta; }; meta = with lib; { - homepage = "https://jinja.palletsprojects.com/"; - description = "Stand-alone template engine"; + changelog = "https://github.com/pallets/jinja/blob/${version}/CHANGES.rst"; + description = "Very fast and expressive template engine"; + downloadPage = "https://github.com/pallets/jinja"; + homepage = "https://jinja.palletsprojects.com"; license = licenses.bsd3; longDescription = '' Jinja is a fast, expressive, extensible templating engine. Special placeholders in the template allow writing code similar to Python syntax. Then the template is passed data to render the final document. - an optional sandboxed environment. ''; maintainers = with maintainers; [ pierron ]; }; diff --git a/pkgs/development/python-modules/jq/jq-py-setup.patch b/pkgs/development/python-modules/jq/jq-py-setup.patch deleted file mode 100644 index 0894b776fef69..0000000000000 --- a/pkgs/development/python-modules/jq/jq-py-setup.patch +++ /dev/null @@ -1,111 +0,0 @@ -diff --git a/setup.py b/setup.py -index 01cc813..15e9048 100644 ---- a/setup.py -+++ b/setup.py -@@ -1,97 +1,18 @@ - #!/usr/bin/env python - - import os --import subprocess --import tarfile --import shutil --import sysconfig - - from setuptools import setup --from setuptools.command.build_ext import build_ext - from setuptools.extension import Extension - -- --def _path_in_dir(relative_path): -- return os.path.abspath(os.path.join(os.path.dirname(__file__), relative_path)) -- --def _dep_source_path(relative_path): -- return os.path.join(_path_in_dir("deps"), relative_path) -- --def _dep_build_path(relative_path): -- return os.path.join(_path_in_dir("_deps/build"), relative_path) -- - def _read(fname): - return open(os.path.join(os.path.dirname(__file__), fname)).read() - - --jq_lib_tarball_path = _dep_source_path("jq-1.6.tar.gz") --jq_lib_dir = _dep_build_path("jq-1.6") -- --oniguruma_version = "6.9.4" --oniguruma_lib_tarball_path = _dep_source_path("onig-{}.tar.gz".format(oniguruma_version)) --oniguruma_lib_build_dir = _dep_build_path("onig-{}".format(oniguruma_version)) --oniguruma_lib_install_dir = _dep_build_path("onig-install-{}".format(oniguruma_version)) -- --class jq_build_ext(build_ext): -- def run(self): -- if not os.path.exists(_dep_build_path(".")): -- os.makedirs(_dep_build_path(".")) -- self._build_oniguruma() -- self._build_libjq() -- build_ext.run(self) -- -- def _build_oniguruma(self): -- self._build_lib( -- tarball_path=oniguruma_lib_tarball_path, -- lib_dir=oniguruma_lib_build_dir, -- commands=[ -- ["./configure", "CFLAGS=-fPIC", "--prefix=" + oniguruma_lib_install_dir], -- ["make"], -- ["make", "install"], -- ]) -- -- -- def _build_libjq(self): -- self._build_lib( -- tarball_path=jq_lib_tarball_path, -- lib_dir=jq_lib_dir, -- commands=[ -- ["./configure", "CFLAGS=-fPIC -pthread", "--disable-maintainer-mode", "--with-oniguruma=" + oniguruma_lib_install_dir], -- ["make"], -- ]) -- -- def _build_lib(self, tarball_path, lib_dir, commands): -- self._extract_tarball( -- tarball_path=tarball_path, -- lib_dir=lib_dir, -- ) -- -- macosx_deployment_target = sysconfig.get_config_var("MACOSX_DEPLOYMENT_TARGET") -- if macosx_deployment_target: -- os.environ['MACOSX_DEPLOYMENT_TARGET'] = str(macosx_deployment_target) -- -- def run_command(args): -- print("Executing: %s" % ' '.join(args)) -- subprocess.check_call(args, cwd=lib_dir) -- -- for command in commands: -- run_command(command) -- -- def _extract_tarball(self, tarball_path, lib_dir): -- if os.path.exists(lib_dir): -- shutil.rmtree(lib_dir) -- tarfile.open(tarball_path, "r:gz").extractall(_dep_build_path(".")) -- -- - jq_extension = Extension( - "jq", - sources=["jq.c"], -- include_dirs=[os.path.join(jq_lib_dir, "src")], -- extra_link_args=["-lm"], -- extra_objects=[ -- os.path.join(jq_lib_dir, ".libs/libjq.a"), -- os.path.join(oniguruma_lib_install_dir, "lib/libonig.a"), -- ], -+ libraries=["jq"] - ) - - setup( -@@ -104,7 +25,6 @@ def _extract_tarball(self, tarball_path, lib_dir): - python_requires='>=3.5', - license='BSD 2-Clause', - ext_modules = [jq_extension], -- cmdclass={"build_ext": jq_build_ext}, - classifiers=[ - 'Development Status :: 5 - Production/Stable', - 'Intended Audience :: Developers', diff --git a/pkgs/development/python-modules/json-schema-for-humans/default.nix b/pkgs/development/python-modules/json-schema-for-humans/default.nix index dfbe2d7d638e1..9bd62060457c7 100644 --- a/pkgs/development/python-modules/json-schema-for-humans/default.nix +++ b/pkgs/development/python-modules/json-schema-for-humans/default.nix @@ -11,6 +11,7 @@ , pygments , pytestCheckHook , pythonOlder +, pythonRelaxDepsHook , pytz , pyyaml , requests @@ -18,20 +19,25 @@ buildPythonPackage rec { pname = "json-schema-for-humans"; - version = "0.46"; - format = "pyproject"; + version = "0.47"; + pyproject = true; disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "coveooss"; - repo = pname; + repo = "json-schema-for-humans"; rev = "refs/tags/v${version}"; - hash = "sha256-wTO+d0O3SKT2jJ2zNubT2q76PdJ7+kT9RBEw5MMH1yg="; + hash = "sha256-yioYsCp+q5YWdIWDlNZkpaLqo++n+dV5jyEeIhUDHr4="; }; + pythonRelaxDeps = [ + "dataclasses-json" + ]; + nativeBuildInputs = [ poetry-core + pythonRelaxDepsHook ]; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/json-stream-rs-tokenizer/default.nix b/pkgs/development/python-modules/json-stream-rs-tokenizer/default.nix index 6800635c0b2f2..9609d68c69614 100644 --- a/pkgs/development/python-modules/json-stream-rs-tokenizer/default.nix +++ b/pkgs/development/python-modules/json-stream-rs-tokenizer/default.nix @@ -6,6 +6,7 @@ , fetchFromGitHub , json-stream , json-stream-rs-tokenizer +, pythonOlder , rustc , rustPlatform , setuptools @@ -15,14 +16,16 @@ buildPythonPackage rec { pname = "json-stream-rs-tokenizer"; - version = "0.4.22"; - format = "setuptools"; + version = "0.4.25"; + pyproject = true; + + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "smheidrich"; repo = "py-json-stream-rs-tokenizer"; rev = "refs/tags/v${version}"; - hash = "sha256-EW726gUXTBX3gTxlFQ45RgkUa2Z4tIjUZxO4GBLXgEs="; + hash = "sha256-zo/jRAWSwcOnO8eU4KhDNz44P6xDGcrZf9CflwsSvF0="; }; cargoDeps = rustPlatform.importCargoLock { diff --git a/pkgs/development/python-modules/jsonargparse/default.nix b/pkgs/development/python-modules/jsonargparse/default.nix new file mode 100644 index 0000000000000..f52b6412a6173 --- /dev/null +++ b/pkgs/development/python-modules/jsonargparse/default.nix @@ -0,0 +1,109 @@ +{ lib +, argcomplete +, attrs +, buildPythonPackage +, docstring-parser +, fetchFromGitHub +, fsspec +, jsonnet +, jsonschema +, omegaconf +, pydantic +, pytest-subtests +, pytestCheckHook +, pythonOlder +, pyyaml +, reconplogger +, requests +, responses +, ruyaml +, setuptools +, types-pyyaml +, types-requests +, typeshed-client +}: + +buildPythonPackage rec { + pname = "jsonargparse"; + version = "4.27.4"; + pyproject = true; + + disabled = pythonOlder "3.11"; + + src = fetchFromGitHub { + owner = "omni-us"; + repo = "jsonargparse"; + rev = "refs/tags/v${version}"; + hash = "sha256-MzcFsH1PyDAnPBEELHLRKfD3TR01INDFIvHc1y3dbng="; + }; + + nativeBuildInputs = [ + setuptools + ]; + + propagatedBuildInputs = [ + pyyaml + ]; + + passthru.optional-dependencies = { + all = [ + argcomplete + fsspec + jsonnet + jsonschema + omegaconf + ruyaml + docstring-parser + typeshed-client + requests + ]; + argcomplete = [ + argcomplete + ]; + fsspec = [ + fsspec + ]; + jsonnet = [ + jsonnet + # jsonnet-binary + ]; + jsonschema = [ + jsonschema + ]; + omegaconf = [ + omegaconf + ]; + reconplogger = [ + reconplogger + ]; + ruyaml = [ + ruyaml + ]; + signatures = [ + docstring-parser + typeshed-client + ]; + urls = [ + requests + ]; + }; + + nativeCheckInputs = [ + pytest-subtests + pytestCheckHook + types-pyyaml + types-requests + ]; + + pythonImportsCheck = [ + "jsonargparse" + ]; + + meta = with lib; { + description = "Module to mplement minimal boilerplate CLIs derived from various sources"; + homepage = "https://github.com/omni-us/jsonargparse"; + changelog = "https://github.com/omni-us/jsonargparse/blob/${version}/CHANGELOG.rst"; + license = licenses.mit; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/jsonrpc-base/default.nix b/pkgs/development/python-modules/jsonrpc-base/default.nix index 42aa426380134..f10f9bbb8b829 100644 --- a/pkgs/development/python-modules/jsonrpc-base/default.nix +++ b/pkgs/development/python-modules/jsonrpc-base/default.nix @@ -4,22 +4,27 @@ , pytest-asyncio , pytestCheckHook , pythonOlder +, setuptools }: buildPythonPackage rec { pname = "jsonrpc-base"; - version = "2.1.1"; - format = "setuptools"; + version = "2.2.0"; + pyproject = true; disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "emlove"; - repo = pname; - rev = version; - hash = "sha256-C03m/zeLIFqsmEMSzt84LMOWAHUcpdEHhaa5hx2NsoQ="; + repo = "jsonrpc-base"; + rev = "refs/tags/${version}"; + hash = "sha256-AbpuAW+wuGc+Vj4FDFlyB2YbiwDxPLuyAGiNcmGU+Ss="; }; + nativeBuildInputs = [ + setuptools + ]; + nativeCheckInputs = [ pytest-asyncio pytestCheckHook diff --git a/pkgs/development/python-modules/jsonrpc-websocket/default.nix b/pkgs/development/python-modules/jsonrpc-websocket/default.nix index 6c1569055b5d5..eb50c3f3a32ed 100644 --- a/pkgs/development/python-modules/jsonrpc-websocket/default.nix +++ b/pkgs/development/python-modules/jsonrpc-websocket/default.nix @@ -1,35 +1,42 @@ { lib +, aiohttp +, async-timeout , buildPythonPackage , fetchFromGitHub -, aiohttp , jsonrpc-base , pytest-asyncio , pytestCheckHook , pythonOlder +, setuptools }: buildPythonPackage rec { pname = "jsonrpc-websocket"; - version = "3.1.4"; - format = "setuptools"; + version = "3.1.5"; + pyproject = true; - disabled = pythonOlder "3.6"; + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "emlove"; repo = "jsonrpc-websocket"; - rev = version; - hash = "sha256-xSOITOVtsNMEDrq610l8LNipLdyMWzKOQDedQEGaNOQ="; + rev = "refs/tags/${version}"; + hash = "sha256-CdYa4gcbG3EM1glxLU1hyqbNse87KJKjwSRQSFfDMM0="; }; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ aiohttp + async-timeout jsonrpc-base ]; nativeCheckInputs = [ - pytestCheckHook pytest-asyncio + pytestCheckHook ]; pytestFlagsArray = [ diff --git a/pkgs/development/python-modules/jupyter-book/default.nix b/pkgs/development/python-modules/jupyter-book/default.nix index 69d0734bfa00e..bdb7b57729414 100644 --- a/pkgs/development/python-modules/jupyter-book/default.nix +++ b/pkgs/development/python-modules/jupyter-book/default.nix @@ -3,13 +3,12 @@ , fetchPypi , pythonOlder , flit-core -, pythonRelaxDepsHook , click -, docutils , jinja2 , jsonschema , linkify-it-py , myst-nb +, myst-parser , pyyaml , sphinx , sphinx-comments @@ -26,29 +25,28 @@ buildPythonPackage rec { pname = "jupyter-book"; - version = "0.15.1"; + version = "1.0.0"; + pyproject = true; - format = "pyproject"; - - disabled = pythonOlder "3.7"; + disabled = pythonOlder "3.9"; src = fetchPypi { - inherit pname version; - hash = "sha256-ihY07Bb37t7g0Rbx5ft8SCAyia2S2kLglRnccdlWwBA="; + inherit version; + pname = "jupyter_book"; + hash = "sha256-U5xdBJNUYgDZ3ie9S1936uoDEV+JN/gl1P+Cs4AamH4="; }; nativeBuildInputs = [ flit-core - pythonRelaxDepsHook ]; propagatedBuildInputs = [ click - docutils jinja2 jsonschema linkify-it-py myst-nb + myst-parser pyyaml sphinx sphinx-comments @@ -63,16 +61,9 @@ buildPythonPackage rec { sphinx-multitoc-numbering ]; - pythonRelaxDeps = [ - "docutils" - "myst-nb" - "sphinx" - "sphinx-thebe" - "sphinxcontrib-bibtex" - ]; - pythonImportsCheck = [ "jupyter_book" + "jupyter_book.cli.main" ]; meta = with lib; { @@ -81,5 +72,6 @@ buildPythonPackage rec { changelog = "https://github.com/executablebooks/jupyter-book/blob/v${version}/CHANGELOG.md"; license = licenses.bsd3; maintainers = with maintainers; [ marsam ]; + mainProgram = "jupyter-book"; }; } diff --git a/pkgs/development/python-modules/jupyter-lsp/default.nix b/pkgs/development/python-modules/jupyter-lsp/default.nix index 1cc43ebc60013..51161435e9171 100644 --- a/pkgs/development/python-modules/jupyter-lsp/default.nix +++ b/pkgs/development/python-modules/jupyter-lsp/default.nix @@ -7,12 +7,12 @@ buildPythonPackage rec { pname = "jupyter-lsp"; - version = "2.2.1"; + version = "2.2.2"; pyproject = true; src = fetchPypi { inherit pname version; - hash = "sha256-sX+rbXD+g8iJawz/WSN2QAOCR8GWBWtDaEoJArap4Ps="; + hash = "sha256-JW0kYgVCrku6BKUPwfb/4ggJOgfY5pf+oKjRuMobfls="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/jupyter-server-terminals/default.nix b/pkgs/development/python-modules/jupyter-server-terminals/default.nix index 3c9f3b0e043ef..5dbb04fda0922 100644 --- a/pkgs/development/python-modules/jupyter-server-terminals/default.nix +++ b/pkgs/development/python-modules/jupyter-server-terminals/default.nix @@ -16,14 +16,14 @@ let self = buildPythonPackage rec { pname = "jupyter-server-terminals"; - version = "0.5.1"; + version = "0.5.2"; pyproject = true; src = fetchFromGitHub { owner = "jupyter-server"; repo = "jupyter_server_terminals"; rev = "refs/tags/v${version}"; - hash = "sha256-d++WnroL9nq/G8K5nMl98pXYNpXgdWRfCNoIbVoiD7U="; + hash = "sha256-e4PtrK2DCJAK+LYmGguwU5hmxdqP5Dws1dPoPOv/WrM="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/jupyter-server/default.nix b/pkgs/development/python-modules/jupyter-server/default.nix index 240d2064168c6..77993d24fd2c8 100644 --- a/pkgs/development/python-modules/jupyter-server/default.nix +++ b/pkgs/development/python-modules/jupyter-server/default.nix @@ -34,14 +34,14 @@ buildPythonPackage rec { pname = "jupyter-server"; - version = "2.12.4"; + version = "2.12.5"; pyproject = true; disabled = pythonOlder "3.8"; src = fetchPypi { pname = "jupyter_server"; inherit version; - hash = "sha256-QfSh5rkSzCSnxsaUhRs309hBKxgPQ9cjFf5CLLK4XMI="; + hash = "sha256-DttibJS6oigJvhMj+XcM8cAKlSsXCXWS5A0D5qOVFok="; }; nativeBuildInputs = [ @@ -93,11 +93,11 @@ buildPythonPackage rec { "test_cull_idle" "test_server_extension_list" "test_subscribe_websocket" + # test is presumable broken in sandbox + "test_authorized_requests" ] ++ lib.optionals stdenv.isDarwin [ # attempts to use trashcan, build env doesn't allow this "test_delete" - # test is presumable broken in sandbox - "test_authorized_requests" # Insufficient access privileges for operation "test_regression_is_hidden" ] ++ lib.optionals stdenv.isLinux [ diff --git a/pkgs/development/python-modules/jupyterlab-lsp/default.nix b/pkgs/development/python-modules/jupyterlab-lsp/default.nix index 004bddfbe8acf..71012f747e478 100644 --- a/pkgs/development/python-modules/jupyterlab-lsp/default.nix +++ b/pkgs/development/python-modules/jupyterlab-lsp/default.nix @@ -8,12 +8,12 @@ buildPythonPackage rec { pname = "jupyterlab-lsp"; - version = "5.0.1"; + version = "5.0.2"; pyproject = true; src = fetchPypi { inherit pname version; - hash = "sha256-jQ8mhTfZ+6F9EgDfBWVI6I/I3n2lIlJs+mM0OJ0MKTQ="; + hash = "sha256-JmiGhOkHUPjvikFimgpAUOc26IFVWqFBP7Xah54GNfE="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/jupyterlab/default.nix b/pkgs/development/python-modules/jupyterlab/default.nix index c00e171772e14..ed909d15f6a65 100644 --- a/pkgs/development/python-modules/jupyterlab/default.nix +++ b/pkgs/development/python-modules/jupyterlab/default.nix @@ -19,14 +19,14 @@ buildPythonPackage rec { pname = "jupyterlab"; - version = "4.0.10"; + version = "4.0.12"; pyproject = true; disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; - hash = "sha256-Rhd+uO3nDcc76SKsmfjvlDvcLfvGoxs1PEvehIo13uE="; + hash = "sha256-ll2S76gqU47XDMs5aNmqu6eIhA2oguE9ewYXgM3tw7c="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/jupytext/default.nix b/pkgs/development/python-modules/jupytext/default.nix index f88b56fef6628..699cb58e6c387 100644 --- a/pkgs/development/python-modules/jupytext/default.nix +++ b/pkgs/development/python-modules/jupytext/default.nix @@ -19,14 +19,14 @@ buildPythonPackage rec { pname = "jupytext"; - version = "1.16.0"; + version = "1.16.1"; pyproject = true; disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; - hash = "sha256-lMfmd3XpDheSw5q3/KTgRZv3w1ZWEj6Nwunhs+lTuvg="; + hash = "sha256-aMe2hoXocOgOYP2oKG+9Ymnpx03B30MW32/kbqvJTJk="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/kaa-base/default.nix b/pkgs/development/python-modules/kaa-base/default.nix index 96c83a4ac81dc..8d83bdb5b1109 100644 --- a/pkgs/development/python-modules/kaa-base/default.nix +++ b/pkgs/development/python-modules/kaa-base/default.nix @@ -24,20 +24,20 @@ buildPythonPackage rec { installPhase = '' runHook preInstall - mkdir -p "$out/lib/${python.libPrefix}/site-packages" + mkdir -p "$out/${python.sitePackages}" - export PYTHONPATH="$out/lib/${python.libPrefix}/site-packages:$PYTHONPATH" + export PYTHONPATH="$out/${python.sitePackages}:$PYTHONPATH" ${python}/bin/${python.executable} setup.py install \ - --install-lib=$out/lib/${python.libPrefix}/site-packages \ + --install-lib=$out/${python.sitePackages} \ --prefix="$out" - eapth="$out/lib/${python.libPrefix}"/site-packages/easy-install.pth + eapth="$out/${python.sitePackages}/easy-install.pth" if [ -e "$eapth" ]; then mv "$eapth" $(dirname "$eapth")/${pname}-${version}.pth fi - rm -f "$out/lib/${python.libPrefix}"/site-packages/site.py* + rm -f "$out/${python.sitePackages}"/site.py* runHook postInstall ''; diff --git a/pkgs/development/python-modules/kaa-metadata/default.nix b/pkgs/development/python-modules/kaa-metadata/default.nix index de71d207b8768..20ae66f17a9de 100644 --- a/pkgs/development/python-modules/kaa-metadata/default.nix +++ b/pkgs/development/python-modules/kaa-metadata/default.nix @@ -29,20 +29,20 @@ buildPythonPackage rec { installPhase = '' runHook preInstall - mkdir -p "$out/lib/${python.libPrefix}/site-packages" + mkdir -p "$out/${python.sitePackages}" - export PYTHONPATH="$out/lib/${python.libPrefix}/site-packages:$PYTHONPATH" + export PYTHONPATH="$out/${python.sitePackages}:$PYTHONPATH" ${python}/bin/${python.executable} setup.py install \ - --install-lib=$out/lib/${python.libPrefix}/site-packages \ + --install-lib=$out/${python.sitePackages} \ --prefix="$out" - eapth="$out/lib/${python.libPrefix}"/site-packages/easy-install.pth + eapth="$out/${python.sitePackages}/easy-install.pth" if [ -e "$eapth" ]; then mv "$eapth" $(dirname "$eapth")/${pname}-${version}.pth fi - rm -f "$out/lib/${python.libPrefix}"/site-packages/site.py* + rm -f "$out/${python.sitePackages}"/site.py* runHook postInstall ''; diff --git a/pkgs/development/python-modules/kaggle/default.nix b/pkgs/development/python-modules/kaggle/default.nix index e0b4ab4ef586e..58098b37bf797 100644 --- a/pkgs/development/python-modules/kaggle/default.nix +++ b/pkgs/development/python-modules/kaggle/default.nix @@ -13,12 +13,12 @@ buildPythonPackage rec { pname = "kaggle"; - version = "1.6.1"; + version = "1.6.3"; format = "setuptools"; src = fetchPypi { inherit pname version; - sha256 = "sha256-AsdRYWbeG++zACCSVfnCPuy1hIdixLqNbxP0npmmabQ="; + sha256 = "sha256-J2FOzXJhO59Ya4cjE68WOK2MChfQx4rZ1KcYeb7NcuQ="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/karton-core/default.nix b/pkgs/development/python-modules/karton-core/default.nix index 1af9386b5b6a9..a934b793c60e7 100644 --- a/pkgs/development/python-modules/karton-core/default.nix +++ b/pkgs/development/python-modules/karton-core/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "karton-core"; - version = "5.3.0"; + version = "5.3.2"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -19,7 +19,7 @@ buildPythonPackage rec { owner = "CERT-Polska"; repo = "karton"; rev = "refs/tags/v${version}"; - hash = "sha256-sf8O4Y/yMoTFCibQRtNDX3pXdQ0Xzor3WqeU4xp3WuU="; + hash = "sha256-/MPD83sBo9n/dI1uXbHbjvz6upJSJrssMGmGwfQ+KE8="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/keyring-pass/default.nix b/pkgs/development/python-modules/keyring-pass/default.nix new file mode 100644 index 0000000000000..c9ac11c9313a8 --- /dev/null +++ b/pkgs/development/python-modules/keyring-pass/default.nix @@ -0,0 +1,78 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, gnupg +, keyring +, pass +, poetry-core +, pythonOlder +}: +buildPythonPackage rec { + pname = "keyring-pass"; + version = "0.9.2"; + disabled = pythonOlder "3.6"; + + pyproject = true; + + src = fetchFromGitHub { + owner = "nazarewk"; + repo = "keyring_pass"; + rev = "refs/tags/v${version}"; + hash = "sha256-Sf7eDOB3prH2s6BzdBtxewSweC0ibLXVxNHBJRRaJe4="; + }; + + postPatch = '' + substituteInPlace keyring_pass/__init__.py \ + --replace 'pass_binary = "pass"' 'pass_binary = "${lib.getExe pass}"' + ''; + + nativeBuildInputs = [ + poetry-core + ]; + + nativeCheckInputs = [ + keyring + gnupg + ]; + + checkPhase = '' + export HOME="$TMPDIR" + + # generate temporary GPG identity + cat <<EOF | gpg --gen-key --batch /dev/stdin + %no-protection + %transient-key + Key-Type: 1 + Key-Length: 1024 + Subkey-Type: 1 + Subkey-Length: 1024 + Name-Real: test + Name-Email: test@example.com + Expire-Date: 1 + EOF + + # configure password store + ${lib.getExe pass} init test@example.com + + # Configure `keyring` CLI + # first make sure `keyring-pass` is in "$PYTHONPATH" + [[ "$PYTHONPATH" == *"$out"/lib/python*/site-packages* ]] + export PYTHON_KEYRING_BACKEND="keyring_pass.PasswordStoreBackend" + + # confirm set/get/del works + keyring set test-service test-username <<<"test-password" + test "$(keyring get test-service test-username)" == "test-password" + keyring del test-service test-username + ''; + + pythonImportsCheck = [ + "keyring_pass" + ]; + + meta = { + description = "Password Store (pass) backend for python's keyring"; + homepage = "https://github.com/nazarewk/keyring_pass"; + license = lib.licenses.mit; + maintainers = [ lib.maintainers.nazarewk ]; + }; +} diff --git a/pkgs/development/python-modules/kombu/default.nix b/pkgs/development/python-modules/kombu/default.nix index cdab3aac8ff4c..27190f8733e8c 100644 --- a/pkgs/development/python-modules/kombu/default.nix +++ b/pkgs/development/python-modules/kombu/default.nix @@ -27,14 +27,14 @@ buildPythonPackage rec { pname = "kombu"; - version = "5.3.4"; + version = "5.3.5"; format = "setuptools"; disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; - hash = "sha256-C7LieGRNEd6mJywXl0o9u5aIqUnzu2CutbeRMpxE+tw="; + hash = "sha256-MORw8aa0nHDcb20Tw+TMTheKpsRpzra81VZFOF/IS5M="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/labgrid/default.nix b/pkgs/development/python-modules/labgrid/default.nix index 15474fa5b6593..31fc50197d20f 100644 --- a/pkgs/development/python-modules/labgrid/default.nix +++ b/pkgs/development/python-modules/labgrid/default.nix @@ -6,6 +6,7 @@ , jinja2 , lib , mock +, openssh , packaging , pexpect , psutil @@ -13,6 +14,7 @@ , pytestCheckHook , pytest-dependency , pytest-mock +, pythonRelaxDepsHook , pyudev , pyusb , pyyaml @@ -25,16 +27,17 @@ buildPythonPackage rec { pname = "labgrid"; - version = "23.0.4"; + version = "23.0.5"; src = fetchFromGitHub { owner = "labgrid-project"; repo = "labgrid"; rev = "refs/tags/v${version}"; - sha256 = "sha256-EEPQSIHKAmLPudv7LLm9ol3Kukgz8edYKfDi+wvERpk="; + hash = "sha256-jrapbSrybuLT3V11rvV342tOr7/sRwBMgAdNWDG5obA="; }; nativeBuildInputs = [ + pythonRelaxDepsHook setuptools setuptools-scm wheel @@ -57,8 +60,25 @@ buildPythonPackage rec { xmodem ]; + pythonRelaxDeps = [ + "attrs" + "autobahn" + "jinja2" + "packaging" + "pexpect" + "pytest" + "pyudev" + "requests" + "xmodem" + ]; + + pythonRemoveDeps = [ + "pyserial-labgrid" + ]; + nativeCheckInputs = [ mock + openssh psutil pytestCheckHook pytest-mock diff --git a/pkgs/development/python-modules/langchain-community/default.nix b/pkgs/development/python-modules/langchain-community/default.nix new file mode 100644 index 0000000000000..0d0046b216ee1 --- /dev/null +++ b/pkgs/development/python-modules/langchain-community/default.nix @@ -0,0 +1,64 @@ +{ lib +, buildPythonPackage +, fetchPypi +, poetry-core +, pythonOlder +, aiohttp +, dataclasses-json +, langchain-core +, langsmith +, numpy +, pyyaml +, requests +, sqlalchemy +, tenacity +, typer +}: + +buildPythonPackage rec { + pname = "langchain-community"; + version = "0.0.16"; + pyproject = true; + + disabled = pythonOlder "3.8"; + + src = fetchPypi { + pname = "langchain_community"; + inherit version; + hash = "sha256-wGUSqTAToG+6dnnNWhJU/4uSfN3S0fvgzERL97vfC4w="; + }; + + nativeBuildInputs = [ + poetry-core + ]; + + propagatedBuildInputs = [ + aiohttp + dataclasses-json + langchain-core + langsmith + numpy + pyyaml + requests + sqlalchemy + tenacity + ]; + + passthru.optional-dependencies = { + cli = [ + typer + ]; + }; + + pythonImportsCheck = [ "langchain_community" ]; + + # PyPI source does not have tests + doCheck = false; + + meta = with lib; { + description = "Community contributed LangChain integrations"; + homepage = "https://github.com/langchain-ai/langchain/tree/master/libs/community"; + license = licenses.mit; + maintainers = with maintainers; [ natsukium ]; + }; +} diff --git a/pkgs/development/python-modules/langchain-core/default.nix b/pkgs/development/python-modules/langchain-core/default.nix new file mode 100644 index 0000000000000..8e8309874f1ec --- /dev/null +++ b/pkgs/development/python-modules/langchain-core/default.nix @@ -0,0 +1,55 @@ +{ lib +, buildPythonPackage +, fetchPypi +, pythonOlder +, poetry-core +, anyio +, jsonpatch +, langsmith +, packaging +, pydantic +, pyyaml +, requests +, tenacity +}: + +buildPythonPackage rec { + pname = "langchain-core"; + version = "0.1.16"; + pyproject = true; + + disabled = pythonOlder "3.8"; + + src = fetchPypi { + pname = "langchain_core"; + inherit version; + hash = "sha256-jLVG7tMYAJ7hqKOB0QgHTt3wOVrmHrJD2wDXbh4mXok="; + }; + + nativeBuildInputs = [ + poetry-core + ]; + + propagatedBuildInputs = [ + anyio + jsonpatch + langsmith + packaging + pydantic + pyyaml + requests + tenacity + ]; + + pythonImportsCheck = [ "langchain_core" ]; + + # PyPI source does not have tests + doCheck = false; + + meta = with lib; { + description = "Building applications with LLMs through composability"; + homepage = "https://github.com/langchain-ai/langchain/tree/master/libs/core"; + license = licenses.mit; + maintainers = with maintainers; [ natsukium ]; + }; +} diff --git a/pkgs/development/python-modules/langchain/default.nix b/pkgs/development/python-modules/langchain/default.nix index 429689452a83e..18936f7a9ca5f 100644 --- a/pkgs/development/python-modules/langchain/default.nix +++ b/pkgs/development/python-modules/langchain/default.nix @@ -6,11 +6,12 @@ , pythonRelaxDepsHook , poetry-core , aiohttp -, anyio , async-timeout , dataclasses-json , jsonpatch , langsmith +, langchain-core +, langchain-community , numpy , pydantic , pyyaml @@ -18,60 +19,27 @@ , sqlalchemy , tenacity # optional dependencies -, atlassian-python-api , azure-core , azure-cosmos , azure-identity -, beautifulsoup4 , chardet , clarifai , cohere -, duckduckgo-search -, elasticsearch , esprima -, faiss -, google-api-python-client -, google-auth -, google-search-results -, gptcache -, html2text , huggingface-hub -, jinja2 -, jq , lark -, librosa -, lxml , manifest-ml -, neo4j -, networkx , nlpcloud -, nltk , openai -, opensearch-py -, pdfminer-six -, pgvector -, pinecone-client -, psycopg2 -, pymongo -, pyowm -, pypdf -, pytesseract -, python-arango , qdrant-client -, rdflib -, redis -, requests-toolbelt , sentence-transformers , tiktoken , torch , transformers , typer -, weaviate-client -, wikipedia # test dependencies , freezegun , pandas -, pexpect , pytest-asyncio , pytest-mock , pytest-socket @@ -84,16 +52,16 @@ buildPythonPackage rec { pname = "langchain"; - version = "0.0.344"; + version = "0.1.1"; pyproject = true; disabled = pythonOlder "3.8"; src = fetchFromGitHub { - owner = "hwchase17"; + owner = "langchain-ai"; repo = "langchain"; rev = "refs/tags/v${version}"; - hash = "sha256-pvoY2QuGTZhqeCi9oLOH1XrxfT4FMfHwNkIGIaYTEo8="; + hash = "sha256-cQz4u6FeVZLNbix4pyc6ulfj+nb/tARMJniusy7Q46A="; }; sourceRoot = "${src.name}/libs/langchain"; @@ -108,17 +76,18 @@ buildPythonPackage rec { ]; propagatedBuildInputs = [ + langchain-core + langchain-community pydantic sqlalchemy requests pyyaml numpy - dataclasses-json - tenacity aiohttp - langsmith - anyio + tenacity jsonpatch + dataclasses-json + langsmith ] ++ lib.optionals (pythonOlder "3.11") [ async-timeout ]; @@ -169,81 +138,9 @@ buildPythonPackage rec { # azure-ai-vision # azure-cognitiveservices-speech # azure-search-documents + # azure-ai-textanalytics ]; all = [ - clarifai - cohere - openai - nlpcloud - huggingface-hub - manifest-ml - elasticsearch - opensearch-py - google-search-results - faiss - sentence-transformers - transformers - nltk - wikipedia - beautifulsoup4 - tiktoken - torch - jinja2 - pinecone-client - # pinecone-text - # marqo - pymongo - weaviate-client - redis - google-api-python-client - google-auth - # wolframalpha - qdrant-client - # tensorflow-text - pypdf - networkx - # nomic - # aleph-alpha-client - # deeplake - # libdeeplake - pgvector - psycopg2 - pyowm - pytesseract - html2text - atlassian-python-api - gptcache - duckduckgo-search - # arxiv - azure-identity - # clickhouse-connect - azure-cosmos - # lancedb - # langkit - lark - pexpect - # pyvespa - # O365 - jq - # docarray - pdfminer-six - lxml - requests-toolbelt - neo4j - # openlm - # azure-ai-formrecognizer - # azure-ai-vision - # azure-cognitiveservices-speech - # momento - # singlestoredb - # tigrisdb - # nebula3-python - # awadb - esprima - rdflib - # amadeus - librosa - python-arango ]; cli = [ typer @@ -277,6 +174,9 @@ buildPythonPackage rec { # these tests have network access "test_socket_disabled" + + # this test may require a specific version of langchain-community + "test_compatible_vectorstore_documentation" ]; pythonImportsCheck = [ @@ -285,8 +185,8 @@ buildPythonPackage rec { meta = with lib; { description = "Building applications with LLMs through composability"; - homepage = "https://github.com/hwchase17/langchain"; - changelog = "https://github.com/hwchase17/langchain/releases/tag/v${version}"; + homepage = "https://github.com/langchain-ai/langchain"; + changelog = "https://github.com/langchain-ai/langchain/releases/tag/v${version}"; license = licenses.mit; maintainers = with maintainers; [ natsukium ]; }; diff --git a/pkgs/development/python-modules/langsmith/default.nix b/pkgs/development/python-modules/langsmith/default.nix index a24fc80db16c4..21ee2b4ac871a 100644 --- a/pkgs/development/python-modules/langsmith/default.nix +++ b/pkgs/development/python-modules/langsmith/default.nix @@ -12,8 +12,8 @@ buildPythonPackage rec { pname = "langsmith"; - version = "0.0.75"; - format = "pyproject"; + version = "0.0.83"; + pyproject = true; disabled = pythonOlder "3.8"; @@ -21,7 +21,7 @@ buildPythonPackage rec { owner = "langchain-ai"; repo = "langsmith-sdk"; rev = "refs/tags/v${version}"; - hash = "sha256-BbDB3xP3OCRXxbOqFIzFNrpK5+wHbIZ/VlurNXrXpTw="; + hash = "sha256-WRrwekh4pcn3I0U/A2Q91ePrRx2RUC3XX+z4bez0BzU="; }; sourceRoot = "${src.name}/python"; @@ -49,6 +49,8 @@ buildPythonPackage rec { "test_as_runnable_batch" "test_as_runnable_async" "test_as_runnable_async_batch" + # requires git repo + "test_git_info" ]; disabledTestPaths = [ diff --git a/pkgs/development/python-modules/ldfparser/default.nix b/pkgs/development/python-modules/ldfparser/default.nix index f71543c828bb0..b5a39128d7861 100644 --- a/pkgs/development/python-modules/ldfparser/default.nix +++ b/pkgs/development/python-modules/ldfparser/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "ldfparser"; - version = "0.21.0"; + version = "0.22.0"; pyproject = true; disabled = pythonOlder "3.7"; @@ -21,7 +21,7 @@ buildPythonPackage rec { owner = "c4deszes"; repo = "ldfparser"; rev = "refs/tags/v${version}"; - hash = "sha256-4uwze9TJYmNvhDiKYyUX6Ya+eQb0mbpQQaawUWmO3Gs="; + hash = "sha256-oHFfoeD2C69VIW82akbp0tmxZp5ImA+l5ZDnN9cjhhA="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/ledgerblue/default.nix b/pkgs/development/python-modules/ledgerblue/default.nix index 5a39ef7ecba47..9342f8d3b5da8 100644 --- a/pkgs/development/python-modules/ledgerblue/default.nix +++ b/pkgs/development/python-modules/ledgerblue/default.nix @@ -1,4 +1,5 @@ { lib +, stdenv , bleak , buildPythonPackage , ecpy @@ -29,7 +30,6 @@ buildPythonPackage rec { }; propagatedBuildInputs = [ - bleak ecpy future hidapi @@ -41,6 +41,9 @@ buildPythonPackage rec { pyelftools python-u2flib-host websocket-client + ] + ++ lib.optionals stdenv.isLinux [ + bleak ]; # No tests diff --git a/pkgs/development/python-modules/ledgercomm/default.nix b/pkgs/development/python-modules/ledgercomm/default.nix index 15bac008f0d5a..94466d2dfaede 100644 --- a/pkgs/development/python-modules/ledgercomm/default.nix +++ b/pkgs/development/python-modules/ledgercomm/default.nix @@ -7,12 +7,12 @@ buildPythonPackage rec { pname = "ledgercomm"; - version = "1.2.0"; + version = "1.2.1"; format = "pyproject"; src = fetchPypi { inherit pname version; - hash = "sha256-HunJjIRa3IpSL/3pZPf6CroLxEK/l7ihh737VOAILgU="; + hash = "sha256-AVz8BfFrjFn4zB2fwLiTWSPx/MOAbTPutrDgVbRPWpE="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/leidenalg/default.nix b/pkgs/development/python-modules/leidenalg/default.nix index 336fb029c4766..661ac2c715975 100644 --- a/pkgs/development/python-modules/leidenalg/default.nix +++ b/pkgs/development/python-modules/leidenalg/default.nix @@ -1,9 +1,10 @@ { lib , buildPythonPackage , ddt -, fetchPypi +, fetchFromGitHub , igraph , igraph-c +, libleidenalg , pythonOlder , setuptools-scm , unittestCheckHook @@ -11,31 +12,29 @@ buildPythonPackage rec { pname = "leidenalg"; - version = "0.10.1"; - format = "setuptools"; + version = "0.10.2"; + pyproject = true; disabled = pythonOlder "3.7"; - src = fetchPypi { - inherit pname version; - hash = "sha256-RXrZaYKoC9XGVxifQt/rd+6807dEoRDlosFhjS64C0c="; + src = fetchFromGitHub { + owner = "vtraag"; + repo = "leidenalg"; + rev = "refs/tags/${version}"; + hash = "sha256-oaTV+BIB/YQBWKrVXuiIEMH/1MxPxeHhjUzbmxt6hlw="; }; - postPatch = '' - substituteInPlace ./setup.py \ - --replace "[\"/usr/include/igraph\", \"/usr/local/include/igraph\"]" \ - "[\"${igraph-c.dev}/include/igraph\"]" - - rm -r vendor - ''; - nativeBuildInputs = [ setuptools-scm ]; + buildInputs = [ + igraph-c + libleidenalg + ]; + propagatedBuildInputs = [ igraph - igraph-c ]; checkInputs = [ @@ -46,8 +45,9 @@ buildPythonPackage rec { pythonImportsCheck = [ "leidenalg" ]; meta = with lib; { + changelog = "https://github.com/vtraag/leidenalg/blob/${version}/CHANGELOG"; description = "Implementation of the Leiden algorithm for various quality functions to be used with igraph in Python"; - homepage = "https://leidenalg.readthedocs.io"; + homepage = "https://github.com/vtraag/leidenalg"; license = licenses.gpl3Only; maintainers = with maintainers; [ jboy ]; }; diff --git a/pkgs/development/python-modules/levenshtein/default.nix b/pkgs/development/python-modules/levenshtein/default.nix index 037ae3cda69f1..2a297571b3f10 100644 --- a/pkgs/development/python-modules/levenshtein/default.nix +++ b/pkgs/development/python-modules/levenshtein/default.nix @@ -22,7 +22,8 @@ buildPythonPackage rec { owner = "maxbachmann"; repo = "Levenshtein"; rev = "refs/tags/v${version}"; - hash = "sha256-O39Xe26WKAGcv6DEvwuOL8NZJBem5SYZDX1TPAY7/uA="; + hash = "sha256-xQimslz/G6nf2uYerLSaRAK5gvmfDmWTzEx/fh+nqg0="; + fetchSubmodules = true; ## for vendored `rapidfuzz-cpp` }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/libagent/default.nix b/pkgs/development/python-modules/libagent/default.nix index 5b537f0c00842..12c4ce39d7590 100644 --- a/pkgs/development/python-modules/libagent/default.nix +++ b/pkgs/development/python-modules/libagent/default.nix @@ -18,18 +18,18 @@ , pynacl }: -# XXX: when changing this package, please test the package onlykey-agent. +# When changing this package, please test packages {keepkey,ledger,onlykey,trezor}-agent buildPythonPackage rec { pname = "libagent"; - version = "0.14.5"; + version = "0.14.8"; format = "setuptools"; src = fetchFromGitHub { owner = "romanz"; repo = "trezor-agent"; rev = "v${version}"; - hash = "sha256-RISAy0efdatr9u4CWNRGnlffkC8ksw1NyRpJWKwqz+s="; + hash = "sha256-tcVott/GlHsICQf640Gm5jx89fZWsCdcYnBxi/Kh2oc="; }; # hardcode the path to gpgconf in the libagent library diff --git a/pkgs/development/python-modules/libcloud/default.nix b/pkgs/development/python-modules/libcloud/default.nix index 2361768258df4..b6bb639b3afc7 100644 --- a/pkgs/development/python-modules/libcloud/default.nix +++ b/pkgs/development/python-modules/libcloud/default.nix @@ -8,14 +8,14 @@ buildPythonPackage rec { pname = "apache-libcloud"; - version = "3.7.0"; + version = "3.8.0"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - hash = "sha256-FIqeUAaWVEMqfTSZeVTpFDTdOOv2iDLrnHXUQrPmL60="; + hash = "sha256-db9MCxI7wiXiTKlfyhw1vjCxnmu4X+6ngUBNQ8QnbJE="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/libknot/default.nix b/pkgs/development/python-modules/libknot/default.nix index fd5b0451381bc..f79e4d638eba1 100644 --- a/pkgs/development/python-modules/libknot/default.nix +++ b/pkgs/development/python-modules/libknot/default.nix @@ -11,12 +11,12 @@ buildPythonPackage rec { pname = "libknot"; - version = "3.3.3"; + version = "3.3.4"; pyproject = true; src = fetchPypi { inherit pname version; - hash = "sha256-w8VAA+llRg1xeAMRe7ISHo8H+qGi247jwOjTZHecFVM="; + hash = "sha256-KRxc34lqOGuYJM2mUsYrjfiVCQNBxcQyO30wPLf17+Q="; }; postPatch = '' diff --git a/pkgs/development/python-modules/librosa/default.nix b/pkgs/development/python-modules/librosa/default.nix index a93b6b0d99cb7..48eae549523fc 100644 --- a/pkgs/development/python-modules/librosa/default.nix +++ b/pkgs/development/python-modules/librosa/default.nix @@ -106,6 +106,8 @@ buildPythonPackage rec { "test_example" "test_example_info" "test_load_resample" + # does not converge + "test_nnls_vector" ]; meta = with lib; { diff --git a/pkgs/development/python-modules/librouteros/default.nix b/pkgs/development/python-modules/librouteros/default.nix index c59af697b5f5b..1de2afd290a6e 100644 --- a/pkgs/development/python-modules/librouteros/default.nix +++ b/pkgs/development/python-modules/librouteros/default.nix @@ -1,25 +1,30 @@ { lib , buildPythonPackage , fetchFromGitHub -, isPy3k -, pytestCheckHook , pytest-xdist +, pytestCheckHook +, pythonOlder +, setuptools }: buildPythonPackage rec { pname = "librouteros"; version = "3.2.1"; - format = "setuptools"; + pyproject = true; - disabled = !isPy3k; + disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "luqasz"; - repo = pname; - rev = version; + repo = "librouteros"; + rev = "refs/tags/${version}"; hash = "sha256-VwpZ1RY6Sul7xvWY7ZoOxZ7KgbRmKRwcVdF9e2b3f6Q="; }; + nativeBuildInputs = [ + setuptools + ]; + nativeCheckInputs = [ pytest-xdist pytestCheckHook @@ -33,6 +38,8 @@ buildPythonPackage rec { "test_add_then_remove" "test_add_then_update" "test_generator_ditch" + # AttributeError: 'called_once_with' is not a valid assertion + "test_rawCmd_calls_writeSentence" ]; pythonImportsCheck = [ @@ -42,6 +49,7 @@ buildPythonPackage rec { meta = with lib; { description = "Python implementation of the MikroTik RouterOS API"; homepage = "https://librouteros.readthedocs.io/"; + changelog = "https://github.com/luqasz/librouteros/blob/${version}/CHANGELOG.rst"; license = with licenses; [ gpl2Only ]; maintainers = with maintainers; [ fab ]; }; diff --git a/pkgs/development/python-modules/libvirt/default.nix b/pkgs/development/python-modules/libvirt/default.nix index de5a75ee9eea4..e10f7c056c6b8 100644 --- a/pkgs/development/python-modules/libvirt/default.nix +++ b/pkgs/development/python-modules/libvirt/default.nix @@ -2,14 +2,14 @@ buildPythonPackage rec { pname = "libvirt"; - version = "9.10.0"; + version = "10.0.0"; format = "setuptools"; src = fetchFromGitLab { owner = "libvirt"; repo = "libvirt-python"; rev = "v${version}"; - hash = "sha256-7qJieTLPzyHvhOLUsti4Mbt94iba2eTZd6OvPn3uLEA="; + hash = "sha256-zl1Hfm7flRflNjIpLoLAlPDysYlieC05HEd/mzFW8pU="; }; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/development/python-modules/linear-operator/default.nix b/pkgs/development/python-modules/linear-operator/default.nix index 907cb9c44d735..8ebe174d199be 100644 --- a/pkgs/development/python-modules/linear-operator/default.nix +++ b/pkgs/development/python-modules/linear-operator/default.nix @@ -3,10 +3,12 @@ , fetchFromGitHub , jaxtyping , pytestCheckHook +, pythonRelaxDepsHook , scipy , setuptools , setuptools-scm , torch +, typeguard , wheel }: @@ -23,6 +25,7 @@ buildPythonPackage rec { }; nativeBuildInputs = [ + pythonRelaxDepsHook setuptools setuptools-scm wheel @@ -32,6 +35,11 @@ buildPythonPackage rec { jaxtyping scipy torch + typeguard + ]; + + pythonRelaxDeps = [ + "typeguard" ]; pythonImportsCheck = [ "linear_operator" ]; @@ -42,6 +50,7 @@ buildPythonPackage rec { disabledTests = [ # flaky numerical tests + "test_matmul_matrix_broadcast" "test_svd" ]; diff --git a/pkgs/development/python-modules/linien-common/default.nix b/pkgs/development/python-modules/linien-common/default.nix index de05fab7f74d9..605fdd6f740e3 100644 --- a/pkgs/development/python-modules/linien-common/default.nix +++ b/pkgs/development/python-modules/linien-common/default.nix @@ -4,7 +4,7 @@ , setuptools , importlib-metadata , numpy -, rpyc +, rpyc4 , scipy , appdirs , callPackage @@ -33,7 +33,7 @@ buildPythonPackage rec { propagatedBuildInputs = [ importlib-metadata numpy - rpyc + rpyc4 scipy appdirs ]; diff --git a/pkgs/development/python-modules/litellm/default.nix b/pkgs/development/python-modules/litellm/default.nix index b6d29b5501f9c..f3ec6b82d9ca0 100644 --- a/pkgs/development/python-modules/litellm/default.nix +++ b/pkgs/development/python-modules/litellm/default.nix @@ -15,7 +15,7 @@ , httpx }: let - version = "1.17.0"; + version = "1.22.3"; in buildPythonPackage rec { pname = "litellm"; @@ -26,7 +26,7 @@ buildPythonPackage rec { owner = "BerriAI"; repo = "litellm"; rev = "refs/tags/v${version}"; - hash = "sha256-lH0J5QFjSHOkHZWZQaH5ig6d9vWm7Mj02ssVc6lE4Uo="; + hash = "sha256-80XEbc0DW4CWGIAjbV2bossAKqvmqZqfZoFZi8H4NNc="; }; postPatch = '' diff --git a/pkgs/development/python-modules/lmcloud/default.nix b/pkgs/development/python-modules/lmcloud/default.nix new file mode 100644 index 0000000000000..5b048bf3e346e --- /dev/null +++ b/pkgs/development/python-modules/lmcloud/default.nix @@ -0,0 +1,51 @@ +{ lib +, authlib +, bleak +, buildPythonPackage +, fetchFromGitHub +, httpx +, pythonOlder +, setuptools +, websockets +}: + +buildPythonPackage rec { + pname = "lmcloud"; + version = "0.4.35"; + pyproject = true; + + disabled = pythonOlder "3.11"; + + src = fetchFromGitHub { + owner = "zweckj"; + repo = "lmcloud"; + rev = "refs/tags/v${version}"; + hash = "sha256-TUve21yamtEmEceK/V1w7IZjnMgKConMfSY/GlqFpp8="; + }; + + nativeBuildInputs = [ + setuptools + ]; + + propagatedBuildInputs = [ + authlib + bleak + httpx + websockets + ]; + + # Module has no tests + doCheck = false; + + pythonImportsCheck = [ + "lmcloud" + ]; + + meta = with lib; { + description = "Library to interface with La Marzocco's cloud"; + homepage = "https://github.com/zweckj/lmcloud"; + changelog = "https://github.com/zweckj/lmcloud/releases/tag/v${version}"; + license = licenses.mit; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/locationsharinglib/default.nix b/pkgs/development/python-modules/locationsharinglib/default.nix index 5f47be17a4db7..98888e18df690 100644 --- a/pkgs/development/python-modules/locationsharinglib/default.nix +++ b/pkgs/development/python-modules/locationsharinglib/default.nix @@ -13,14 +13,14 @@ buildPythonPackage rec { pname = "locationsharinglib"; - version = "5.0.2"; + version = "5.0.3"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-ydwtcIJ2trQ6xg2r5kU/ogvjdBwUZhYhBdc6nBmSGcg="; + hash = "sha256-ar5/gyDnby0aceqqHe8lTQaHafOub+IPKglmct4xEGM="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/logging-journald/default.nix b/pkgs/development/python-modules/logging-journald/default.nix index 92cb8475c9d69..812de51498d14 100644 --- a/pkgs/development/python-modules/logging-journald/default.nix +++ b/pkgs/development/python-modules/logging-journald/default.nix @@ -7,7 +7,7 @@ buildPythonPackage rec { pname = "logging-journald"; - version = "0.6.5"; + version = "0.6.7"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -16,7 +16,7 @@ buildPythonPackage rec { owner = "mosquito"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-EyKXc/Qr9mRFngDqbCPNVs/0eD9OCbQq0FbymA6kpLQ="; + hash = "sha256-RQ9opkAOZfhYuqOXJ2Mtnig8soL+lCveYH2YdXL1AGM="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/logilab/constraint.nix b/pkgs/development/python-modules/logilab/constraint.nix index 80d6bcc2f5464..3d6b2cc7897b2 100644 --- a/pkgs/development/python-modules/logilab/constraint.nix +++ b/pkgs/development/python-modules/logilab/constraint.nix @@ -11,12 +11,12 @@ buildPythonPackage rec { pname = "logilab-constraint"; - version = "0.7.1"; + version = "1.0"; format = "setuptools"; src = fetchPypi { inherit pname version; - hash = "sha256-5ayQBNjueFHSQIjCilgbfL8VdWNuRSMtkYDh3DouNZQ="; + hash = "sha256-UiE1FsHYJxvJd+lqCQKJQkAHXa5iRQYEzU9nDgrR6YY="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/logmatic-python/default.nix b/pkgs/development/python-modules/logmatic-python/default.nix new file mode 100644 index 0000000000000..24416041f7b26 --- /dev/null +++ b/pkgs/development/python-modules/logmatic-python/default.nix @@ -0,0 +1,44 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, python-json-logger +, pythonOlder +, setuptools +}: + +buildPythonPackage rec { + pname = "logmatic-python"; + version = "0.1.7"; + pyproject = true; + + disabled = pythonOlder "3.8"; + + src = fetchFromGitHub { + owner = "logmatic"; + repo = "logmatic-python"; + rev = "refs/tags/${version}"; + hash = "sha256-UYKm00KhXnPQDkKJVm7s0gOwZ3GNY07O0oKbzPhAdVE="; + }; + + nativeBuildInputs = [ + setuptools + ]; + + propagatedBuildInputs = [ + python-json-logger + ]; + + # Only functional tests, no unit tests + doCheck = false; + + pythonImportsCheck = [ + "logmatic" + ]; + + meta = with lib; { + description = "Python helpers to send logs to Logmatic.io"; + homepage = "https://github.com/logmatic/logmatic-python"; + license = licenses.mit; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/losant-rest/default.nix b/pkgs/development/python-modules/losant-rest/default.nix index fbc65794da262..6587f99d81186 100644 --- a/pkgs/development/python-modules/losant-rest/default.nix +++ b/pkgs/development/python-modules/losant-rest/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "losant-rest"; - version = "1.19.3"; + version = "1.19.4"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "Losant"; repo = "losant-rest-python"; rev = "v${version}"; - hash = "sha256-Ppy7vOA7ix76nvzVEP+BkL8dsoN0oXNX/5IZyhXDoSw="; + hash = "sha256-aVOviCeYi/oj1Xv7I0d4U+JBU0w3wbjORXOim/g5S7U="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/lsprotocol/default.nix b/pkgs/development/python-modules/lsprotocol/default.nix index 06776c0eec3e2..c8c058f47c68b 100644 --- a/pkgs/development/python-modules/lsprotocol/default.nix +++ b/pkgs/development/python-modules/lsprotocol/default.nix @@ -14,16 +14,16 @@ buildPythonPackage rec { pname = "lsprotocol"; - version = "2023.0.0"; - format = "pyproject"; + version = "2023.0.1"; + pyproject = true; disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "microsoft"; - repo = pname; + repo = "lsprotocol"; rev = "refs/tags/${version}"; - hash = "sha256-K5jocKVxMNoUYYUi9YO2+N7hHWj0MFLprqGOzsg1QRs="; + hash = "sha256-PHjLKazMaT6W4Lve1xNxm6hEwqE3Lr2m5L7Q03fqb68="; }; nativeBuildInputs = [ @@ -70,6 +70,7 @@ buildPythonPackage rec { meta = with lib; { description = "Python implementation of the Language Server Protocol"; homepage = "https://github.com/microsoft/lsprotocol"; + changelog = "https://github.com/microsoft/lsprotocol/releases/tag/${version}"; license = licenses.mit; maintainers = with maintainers; [ doronbehar fab ]; }; diff --git a/pkgs/development/python-modules/lupupy/default.nix b/pkgs/development/python-modules/lupupy/default.nix index d2481a5bada95..7be84dae9bc32 100644 --- a/pkgs/development/python-modules/lupupy/default.nix +++ b/pkgs/development/python-modules/lupupy/default.nix @@ -5,20 +5,25 @@ , fetchPypi , pythonOlder , requests +, setuptools }: buildPythonPackage rec { pname = "lupupy"; - version = "0.3.1"; - format = "setuptools"; + version = "0.3.2"; + pyproject = true; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - hash = "sha256-mij5WGIl60D7ya1SdIvZ8TEgIZhJ9Xd2kcUnnbO1dD4="; + hash = "sha256-A92Jk6WlRKep3dkbqLiYYHklEh0pyncipRW6swq0mvo="; }; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ colorlog pyyaml diff --git a/pkgs/development/python-modules/lxmf/default.nix b/pkgs/development/python-modules/lxmf/default.nix index 6081f17c27270..a9bdff4e46df9 100644 --- a/pkgs/development/python-modules/lxmf/default.nix +++ b/pkgs/development/python-modules/lxmf/default.nix @@ -1,14 +1,15 @@ { lib , buildPythonPackage , fetchFromGitHub -, rns , pythonOlder +, rns +, setuptools }: buildPythonPackage rec { pname = "lxmf"; - version = "0.3.8"; - format = "setuptools"; + version = "0.3.9"; + pyproject = true; disabled = pythonOlder "3.7"; @@ -16,9 +17,13 @@ buildPythonPackage rec { owner = "markqvist"; repo = "lxmf"; rev = "refs/tags/${version}"; - hash = "sha256-tse2Hgu50KfxWLBkzyV4VpDj2YHgxIc5izgvwJAJ/7k="; + hash = "sha256-nZDcSVHR8IKlGBa5ljd3MmgzUPvG7Hv76WRfXxMsndY="; }; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ rns ]; diff --git a/pkgs/development/python-modules/maestral/default.nix b/pkgs/development/python-modules/maestral/default.nix index 3e871a90562bb..4645174e122f7 100644 --- a/pkgs/development/python-modules/maestral/default.nix +++ b/pkgs/development/python-modules/maestral/default.nix @@ -62,7 +62,7 @@ buildPythonPackage rec { makeWrapperArgs = [ # Add the installed directories to the python path so the daemon can find them "--prefix PYTHONPATH : ${makePythonPath propagatedBuildInputs}" - "--prefix PYTHONPATH : $out/lib/${python.libPrefix}/site-packages" + "--prefix PYTHONPATH : $out/${python.sitePackages}" ]; nativeCheckInputs = [ diff --git a/pkgs/development/python-modules/maison/default.nix b/pkgs/development/python-modules/maison/default.nix index 79be6d7b5bc75..d28c5cc6c69d9 100644 --- a/pkgs/development/python-modules/maison/default.nix +++ b/pkgs/development/python-modules/maison/default.nix @@ -6,25 +6,31 @@ , pydantic , pytestCheckHook , pythonOlder +, pythonRelaxDepsHook , toml }: buildPythonPackage rec { pname = "maison"; - version = "1.4.2"; + version = "1.4.3"; pyproject = true; - disabled = pythonOlder "3.7"; + disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "dbatten5"; repo = "maison"; rev = "refs/tags/v${version}"; - hash = "sha256-XNo7QS8BCYzkDozLW0T+KMQPI667lDTCFtOqKq9q3hw="; + hash = "sha256-2hUmk91wr5o2cV3un2nMoXDG+3GT7SaIOKY+QaZY3nw="; }; + pythonRelaxDeps = [ + "pydantic" + ]; + nativeBuildInputs = [ poetry-core + pythonRelaxDepsHook ]; propagatedBuildInputs = [ @@ -47,6 +53,5 @@ buildPythonPackage rec { changelog = "https://github.com/dbatten5/maison/releases/tag/v${version}"; license = licenses.mit; maintainers = with maintainers; [ fab ]; - broken = versionAtLeast pydantic.version "2"; }; } diff --git a/pkgs/development/python-modules/manifest-ml/default.nix b/pkgs/development/python-modules/manifest-ml/default.nix index 329f676ef45bc..8bc2710c5a436 100644 --- a/pkgs/development/python-modules/manifest-ml/default.nix +++ b/pkgs/development/python-modules/manifest-ml/default.nix @@ -30,7 +30,7 @@ buildPythonPackage rec { version = "0.1.8"; format = "setuptools"; - disalbed = pythonOlder "3.8"; + disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "HazyResearch"; @@ -39,6 +39,8 @@ buildPythonPackage rec { hash = "sha256-d34TIZYDB8EDEIZUH5mDzfDHzFT290DwjPLJkNneklc="; }; + __darwinAllowLocalNetworking = true; + propagatedBuildInputs = [ numpy pydantic diff --git a/pkgs/development/python-modules/marisa-trie/default.nix b/pkgs/development/python-modules/marisa-trie/default.nix index 8b069fd235a39..544e2196326f6 100644 --- a/pkgs/development/python-modules/marisa-trie/default.nix +++ b/pkgs/development/python-modules/marisa-trie/default.nix @@ -4,7 +4,7 @@ , cython , pytestCheckHook , hypothesis -, readme_renderer +, readme-renderer , pythonOlder }: @@ -26,7 +26,7 @@ buildPythonPackage rec { nativeCheckInputs = [ pytestCheckHook - readme_renderer + readme-renderer hypothesis ]; diff --git a/pkgs/development/python-modules/marshmallow-polyfield/default.nix b/pkgs/development/python-modules/marshmallow-polyfield/default.nix index 24d117eb322e9..dfdb85ebf9c7c 100644 --- a/pkgs/development/python-modules/marshmallow-polyfield/default.nix +++ b/pkgs/development/python-modules/marshmallow-polyfield/default.nix @@ -4,22 +4,32 @@ , marshmallow , pythonOlder , pytestCheckHook +, setuptools }: buildPythonPackage rec { pname = "marshmallow-polyfield"; - version = "5.10"; - format = "setuptools"; + version = "5.11"; + pyproject = true; disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = "Bachmann1234"; - repo = pname; - rev = "v${version}"; - hash = "sha256-oF5LBuDK4kqsAcKwidju+wFjigjy4CNbJ6bfWpGO1yQ="; + repo = "marshmallow-polyfield"; + rev = "refs/tags/v${version}"; + hash = "sha256-jbpeyih2Ccw1Rk+QcXRO9AfN5B/DhZmxa/M6FzXHqqs="; }; + postPatch = '' + substituteInPlace setup.cfg \ + --replace "--cov=marshmallow_polyfield" "" + ''; + + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ marshmallow ]; @@ -28,11 +38,6 @@ buildPythonPackage rec { pytestCheckHook ]; - postPatch = '' - substituteInPlace setup.cfg \ - --replace "--cov=marshmallow_polyfield" "" - ''; - pythonImportsCheck = [ "marshmallow" ]; diff --git a/pkgs/development/python-modules/marshmallow/default.nix b/pkgs/development/python-modules/marshmallow/default.nix index bbe9c9bf157d8..880e3c869aabf 100644 --- a/pkgs/development/python-modules/marshmallow/default.nix +++ b/pkgs/development/python-modules/marshmallow/default.nix @@ -6,22 +6,27 @@ , pytz , simplejson , packaging +, setuptools }: buildPythonPackage rec { pname = "marshmallow"; - version = "3.20.1"; - format = "setuptools"; + version = "3.20.2"; + pyproject = true; disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "marshmallow-code"; - repo = pname; + repo = "marshmallow"; rev = "refs/tags/${version}"; - hash = "sha256-sPYiup7ontnubtBxv+rIT0up4IHPJNCUlH9J4FlHsss="; + hash = "sha256-z6Quf6uTelGwB/uYayVXtVmculwaoI5LL8I0kKiM/e8="; }; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ packaging ]; diff --git a/pkgs/development/python-modules/mashumaro/default.nix b/pkgs/development/python-modules/mashumaro/default.nix index d61ddf90362df..6cfa517cc386a 100644 --- a/pkgs/development/python-modules/mashumaro/default.nix +++ b/pkgs/development/python-modules/mashumaro/default.nix @@ -17,7 +17,7 @@ buildPythonPackage rec { pname = "mashumaro"; - version = "3.11"; + version = "3.12"; pyproject = true; disabled = pythonOlder "3.8"; @@ -26,7 +26,7 @@ buildPythonPackage rec { owner = "Fatal1ty"; repo = "mashumaro"; rev = "refs/tags/v${version}"; - hash = "sha256-7gRbTNNK8elWsL0ub7c/EeswIk4xxJOxKVk8HmvWMZA="; + hash = "sha256-sSwj/8j+vPX7M8l2h4bPs8WnjzIN2WIpyd7/NcGaExg="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/matplotlib/default.nix b/pkgs/development/python-modules/matplotlib/default.nix index 1100d1bdbc99d..8fb5c7c292cf8 100644 --- a/pkgs/development/python-modules/matplotlib/default.nix +++ b/pkgs/development/python-modules/matplotlib/default.nix @@ -6,10 +6,8 @@ , isPyPy , pythonOlder -# https://github.com/matplotlib/matplotlib/blob/main/doc/devel/dependencies.rst # build-system , certifi -, oldest-supported-numpy , pkg-config , pybind11 , setuptools @@ -109,19 +107,11 @@ buildPythonPackage rec { substituteInPlace src/_c_internal_utils.c \ --replace libX11.so.6 ${libX11}/lib/libX11.so.6 \ --replace libwayland-client.so.0 ${wayland}/lib/libwayland-client.so.0 - '' + - # bring our own system libraries - # https://github.com/matplotlib/matplotlib/blob/main/doc/devel/dependencies.rst#c-libraries - '' - echo "[libs] - system_freetype=true - system_qhull=true" > mplsetup.cfg ''; nativeBuildInputs = [ certifi numpy - oldest-supported-numpy # TODO remove after updating to 3.8.0 pkg-config pybind11 setuptools @@ -184,16 +174,17 @@ buildPythonPackage rec { libs = { system_freetype = true; system_qhull = true; - } // lib.optionalAttrs stdenv.isDarwin { # LTO not working in darwin stdenv, see #19312 - enable_lto = false; + enable_lto = !stdenv.isDarwin; }; }; env.MPLSETUPCFG = writeText "mplsetup.cfg" (lib.generators.toINI {} passthru.config); - # Matplotlib needs to be built against a specific version of freetype in - # order for all of the tests to pass. + # Encountering a ModuleNotFoundError, as describved and investigated at: + # https://github.com/NixOS/nixpkgs/issues/255262 . It could be that some of + # which may fail due to a freetype version that doesn't match the freetype + # version used by upstream. doCheck = false; meta = with lib; { diff --git a/pkgs/development/python-modules/mcstatus/default.nix b/pkgs/development/python-modules/mcstatus/default.nix index 865e2a6ee774e..cf817adbaaaa6 100644 --- a/pkgs/development/python-modules/mcstatus/default.nix +++ b/pkgs/development/python-modules/mcstatus/default.nix @@ -13,16 +13,16 @@ buildPythonPackage rec { pname = "mcstatus"; - version = "11.1.0"; - format = "pyproject"; + version = "11.1.1"; + pyproject = true; - disabled = pythonOlder "3.7"; + disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "py-mine"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-LYhd35FsredNaMgMfkj7LntNK3NRoVpniEUT6WHoXx8="; + hash = "sha256-P8Su5P/ztyoXZBVvm5uCMDn4ezeg11oRSQ0QCyIJbVw="; }; postPatch = '' diff --git a/pkgs/development/python-modules/meep/default.nix b/pkgs/development/python-modules/meep/default.nix index d99b5c3e2e0c8..70a588f1c8aad 100644 --- a/pkgs/development/python-modules/meep/default.nix +++ b/pkgs/development/python-modules/meep/default.nix @@ -113,7 +113,7 @@ buildPythonPackage rec { checkPhase = '' runHook preCheck - export PYTHONPATH="$out/lib/${python.libPrefix}/site-packages:$PYTHONPATH" + export PYTHONPATH="$out/${python.sitePackages}:$PYTHONPATH" # Generate a python test script cat > test.py << EOF diff --git a/pkgs/development/python-modules/meilisearch/default.nix b/pkgs/development/python-modules/meilisearch/default.nix index cb40f31941981..92747d8e9ecf3 100644 --- a/pkgs/development/python-modules/meilisearch/default.nix +++ b/pkgs/development/python-modules/meilisearch/default.nix @@ -9,8 +9,8 @@ buildPythonPackage rec { pname = "meilisearch"; - version = "0.28.4"; - format = "pyproject"; + version = "0.29.0"; + pyproject = true; disabled = pythonOlder "3.7"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "meilisearch"; repo = "meilisearch-python"; rev = "refs/tags/v${version}"; - hash = "sha256-ASrm21dW1lCiUZJReJYlot2sp9sO1HuGaWVZXDOC9i4="; + hash = "sha256-jquaxJ+4/yaPsPqer+v2UY1N60U71ig4nowqm/KRIeA="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/memory-allocator/default.nix b/pkgs/development/python-modules/memory-allocator/default.nix index bb9b7dd475099..90c75d0bb7fe5 100644 --- a/pkgs/development/python-modules/memory-allocator/default.nix +++ b/pkgs/development/python-modules/memory-allocator/default.nix @@ -1,7 +1,7 @@ { lib , fetchPypi , buildPythonPackage -, cython +, cython_3 }: buildPythonPackage rec { @@ -15,7 +15,7 @@ buildPythonPackage rec { hash = "sha256-E4BcKuHAG3SJ+rXo6sk2FmK08sAkEuNlLuzkj/aVMWI="; }; - propagatedBuildInputs = [ cython ]; + propagatedBuildInputs = [ cython_3 ]; pythonImportsCheck = [ "memory_allocator" ]; diff --git a/pkgs/development/python-modules/meraki/default.nix b/pkgs/development/python-modules/meraki/default.nix index c29543a21dacb..53d44ee85d749 100644 --- a/pkgs/development/python-modules/meraki/default.nix +++ b/pkgs/development/python-modules/meraki/default.nix @@ -8,14 +8,14 @@ buildPythonPackage rec { pname = "meraki"; - version = "1.41.0"; + version = "1.42.0"; format = "setuptools"; disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; - hash = "sha256-aXcGMRqkiVPnLEYrzIMLDiFXWurBRNlMg4OnRd5jlrY="; + hash = "sha256-PZ875cjJUUE92aBoKfgQ3tY8tVN3ksB7nITc8MK0g+w="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/meshtastic/default.nix b/pkgs/development/python-modules/meshtastic/default.nix index 63a4d364623c8..534623abccddd 100644 --- a/pkgs/development/python-modules/meshtastic/default.nix +++ b/pkgs/development/python-modules/meshtastic/default.nix @@ -1,4 +1,5 @@ { lib +, bleak , buildPythonPackage , dotmap , fetchFromGitHub @@ -20,8 +21,8 @@ buildPythonPackage rec { pname = "meshtastic"; - version = "2.2.17"; - format = "setuptools"; + version = "2.2.20"; + pyproject = true; disabled = pythonOlder "3.7"; @@ -29,10 +30,15 @@ buildPythonPackage rec { owner = "meshtastic"; repo = "Meshtastic-python"; rev = "refs/tags/${version}"; - hash = "sha256-QmsnQf7bHTlVbSwp/jai1uTrBr/iHaf9DhMxgTujQUc="; + hash = "sha256-0q8omX306iM3p52u39Dc7m6oxAPo9Fs6CEVicYdIMT4="; }; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ + bleak dotmap pexpect protobuf @@ -41,8 +47,8 @@ buildPythonPackage rec { pyqrcode pyserial pyyaml - setuptools requests + setuptools tabulate timeago ]; diff --git a/pkgs/development/python-modules/meson-python/default.nix b/pkgs/development/python-modules/meson-python/default.nix index 9d34cb27c8cdc..deaab05a6574e 100644 --- a/pkgs/development/python-modules/meson-python/default.nix +++ b/pkgs/development/python-modules/meson-python/default.nix @@ -48,6 +48,6 @@ buildPythonPackage rec { description = "Meson Python build backend (PEP 517)"; homepage = "https://github.com/mesonbuild/meson-python"; license = [ lib.licenses.mit ]; - maintainers = [ lib.maintainers.fridh ]; + maintainers = with lib.maintainers; [ fridh doronbehar ]; }; } diff --git a/pkgs/development/python-modules/meteofrance-api/default.nix b/pkgs/development/python-modules/meteofrance-api/default.nix index 4aee704e605a6..1a1e14d8ee413 100644 --- a/pkgs/development/python-modules/meteofrance-api/default.nix +++ b/pkgs/development/python-modules/meteofrance-api/default.nix @@ -4,6 +4,7 @@ , poetry-core , pytestCheckHook , pythonOlder +, pythonRelaxDepsHook , pytz , requests , requests-mock @@ -27,6 +28,11 @@ buildPythonPackage rec { nativeBuildInputs = [ poetry-core + pythonRelaxDepsHook + ]; + + pythonRelaxDeps = [ + "urllib3" ]; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/mf2py/default.nix b/pkgs/development/python-modules/mf2py/default.nix index cd72dc7d40b92..ce50d3662f466 100644 --- a/pkgs/development/python-modules/mf2py/default.nix +++ b/pkgs/development/python-modules/mf2py/default.nix @@ -1,26 +1,34 @@ { lib +, beautifulsoup4 , buildPythonPackage , fetchFromGitHub -, beautifulsoup4 , html5lib -, requests , lxml , mock -, nose +, poetry-core +, pytestCheckHook +, pythonOlder +, requests }: buildPythonPackage rec { pname = "mf2py"; - version = "1.1.3"; - format = "setuptools"; + version = "2.0.1"; + pyproject = true; + + disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "microformats"; repo = "mf2py"; rev = "refs/tags/v${version}"; - hash = "sha256-Ya8DND1Dqbygbf1hjIGMlPwyc/MYIWIj+KnWB6Bqu1k="; + hash = "sha256-mhJ+s1rtXEJ6DqVmiyWNEK+3cdDLpR63Q4QGmD9wVio="; }; + nativeBuildInputs = [ + poetry-core + ]; + propagatedBuildInputs = [ beautifulsoup4 html5lib @@ -30,14 +38,17 @@ buildPythonPackage rec { nativeCheckInputs = [ lxml mock - nose + pytestCheckHook ]; - pythonImportsCheck = [ "mf2py" ]; + pythonImportsCheck = [ + "mf2py" + ]; meta = with lib; { description = "Microformats2 parser written in Python"; homepage = "https://microformats.org/wiki/mf2py"; + changelog = "https://github.com/microformats/mf2py/blob/v${version}/CHANGELOG.md"; license = licenses.mit; maintainers = with maintainers; [ ambroisie ]; }; diff --git a/pkgs/development/python-modules/miauth/default.nix b/pkgs/development/python-modules/miauth/default.nix index a48690ab0b07a..486878140e04a 100644 --- a/pkgs/development/python-modules/miauth/default.nix +++ b/pkgs/development/python-modules/miauth/default.nix @@ -1,6 +1,6 @@ { lib , buildPythonPackage -, fetchFromGitHub +, fetchPypi , pythonOlder , pythonRelaxDepsHook @@ -15,20 +15,16 @@ , pytestCheckHook }: -buildPythonPackage { +buildPythonPackage rec { pname = "miauth"; - version = "0.9.1"; + version = "0.9.7"; pyproject = true; disabled = pythonOlder "3.10"; - src = fetchFromGitHub { - owner = "dnandha"; - repo = "miauth"; - # Release is not tagged properly, https://github.com/dnandha/miauth/issues/15 - # rev = "refs/tags/${version}"; - rev = "refs/tags/release"; - hash = "sha256-+aoY0Eyd9y7xQTA3uSC6YIZisViilsHlFaOXmhPMcBY="; + src = fetchPypi { + inherit pname version; + hash = "sha256-2/4nFInpdY8fb/b+sXhgT6ZPtEgBV+KHMyLnxIp6y/U="; }; nativeBuildInputs = [ @@ -45,12 +41,14 @@ buildPythonPackage { cryptography ]; + nativeCheckInputs = [ + pytestCheckHook + ]; + pythonImportsCheck = [ "miauth" ]; - doCheck = false; # no tests - meta = with lib; { description = "Authenticate and interact with Xiaomi devices over BLE"; homepage = "https://github.com/dnandha/miauth"; diff --git a/pkgs/development/python-modules/mitmproxy/default.nix b/pkgs/development/python-modules/mitmproxy/default.nix index 085078429cd55..62fe35f103906 100644 --- a/pkgs/development/python-modules/mitmproxy/default.nix +++ b/pkgs/development/python-modules/mitmproxy/default.nix @@ -3,8 +3,9 @@ , fetchFromGitHub , buildPythonPackage , pythonOlder +, pythonRelaxDepsHook # Mitmproxy requirements -, aioquic-mitmproxy +, aioquic , asgiref , blinker , brotli @@ -44,7 +45,7 @@ buildPythonPackage rec { pname = "mitmproxy"; - version = "10.2.1"; + version = "10.2.2"; pyproject = true; disabled = pythonOlder "3.9"; @@ -53,11 +54,19 @@ buildPythonPackage rec { owner = "mitmproxy"; repo = "mitmproxy"; rev = "refs/tags/${version}"; - hash = "sha256-BO7oQ4TVuZ4dCtROq2M24V6HVo0jzyBdQfb67dYA07U="; + hash = "sha256-oxhpaFW++on3eRXm0anXZDRo6g/X5IflTcZkFF8Kcps="; }; + nativeBuildInputs = [ + pythonRelaxDepsHook + ]; + + pythonRelaxDeps = [ + "aioquic" + ]; + propagatedBuildInputs = [ - aioquic-mitmproxy + aioquic asgiref blinker brotli @@ -109,22 +118,14 @@ buildPythonPackage rec { "test_get_version" # https://github.com/mitmproxy/mitmproxy/commit/36ebf11916704b3cdaf4be840eaafa66a115ac03 # Tests require terminal - "test_integration" + "test_commands_exist" "test_contentview_flowview" "test_flowview" - # ValueError: Exceeds the limit (4300) for integer string conversion - "test_roundtrip_big_integer" - "test_wireguard" - "test_commands_exist" + "test_integration" "test_statusbar" - # AssertionError: Playbook mismatch! - "test_untrusted_cert" - "test_mitmproxy_ca_is_untrusted" - ]; - - disabledTestPaths = [ - # teardown of half the tests broken - "test/mitmproxy/addons/test_onboarding.py" + # FileNotFoundError: [Errno 2] No such file or directory + # likely wireguard is also not working in the sandbox + "test_wireguard" ]; dontUsePytestXdist = true; @@ -136,6 +137,6 @@ buildPythonPackage rec { homepage = "https://mitmproxy.org/"; changelog = "https://github.com/mitmproxy/mitmproxy/blob/${version}/CHANGELOG.md"; license = licenses.mit; - maintainers = with maintainers; [ kamilchm SuperSandro2000 ]; + maintainers = with maintainers; [ SuperSandro2000 ]; }; } diff --git a/pkgs/development/python-modules/mkdocs-macros/default.nix b/pkgs/development/python-modules/mkdocs-macros/default.nix index e55d1b0801ae7..50f88efcdf29f 100644 --- a/pkgs/development/python-modules/mkdocs-macros/default.nix +++ b/pkgs/development/python-modules/mkdocs-macros/default.nix @@ -15,11 +15,11 @@ buildPythonPackage rec { pname = "mkdocs-macros-plugin"; - version = "0.7.0"; + version = "1.0.5"; src = fetchPypi { inherit pname version; - sha256 = "sha256:0206cm0153vzp10c8a15bi2znisq5pv59zi9vrcm74pnpk5f2r4y"; + sha256 = "sha256-/jSNdfAckR82K22ZjFez2FtQWHbd5p25JPLFEsOVwyg="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/mkdocs-material/default.nix b/pkgs/development/python-modules/mkdocs-material/default.nix index e8df6bbc82537..317271a10d559 100644 --- a/pkgs/development/python-modules/mkdocs-material/default.nix +++ b/pkgs/development/python-modules/mkdocs-material/default.nix @@ -32,7 +32,7 @@ buildPythonPackage rec { pname = "mkdocs-material"; - version = "9.4.14"; + version = "9.5.6"; pyproject = true; disabled = pythonOlder "3.7"; @@ -41,7 +41,7 @@ buildPythonPackage rec { owner = "squidfunk"; repo = "mkdocs-material"; rev = "refs/tags/${version}"; - hash = "sha256-oP0DeSRgoLx6boEOa3if5BitGXmJ11DoUVZK16Sjlwg="; + hash = "sha256-t+kS/MZ6kfga+LPSBj0h+vkY/u/bd3iqRUyOHXfrwDU="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/mkdocs-swagger-ui-tag/default.nix b/pkgs/development/python-modules/mkdocs-swagger-ui-tag/default.nix index 85687b1882bab..60fe20c468af1 100644 --- a/pkgs/development/python-modules/mkdocs-swagger-ui-tag/default.nix +++ b/pkgs/development/python-modules/mkdocs-swagger-ui-tag/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "mkdocs-swagger-ui-tag"; - version = "0.6.7"; + version = "0.6.8"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "Blueswen"; repo = "mkdocs-swagger-ui-tag"; rev = "refs/tags/v${version}"; - hash = "sha256-lvE/mN56X2fx835GFNDYQc7ptxBYqwjrJ9Z6Flcvufg="; + hash = "sha256-TV7V1PttzyLeVQ/Ag/tMV2aqtCys1mlYpj6i0x+ko/w="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/mmengine/default.nix b/pkgs/development/python-modules/mmengine/default.nix index a73d1fff7d358..dd4e9095325fa 100644 --- a/pkgs/development/python-modules/mmengine/default.nix +++ b/pkgs/development/python-modules/mmengine/default.nix @@ -20,16 +20,16 @@ buildPythonPackage rec { pname = "mmengine"; - version = "0.10.1"; - format = "setuptools"; + version = "0.10.3"; + pyproject = true; disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "open-mmlab"; - repo = pname; + repo = "mmengine"; rev = "refs/tags/v${version}"; - hash = "sha256-PG6KSoM5VUyU84z66eZknQfMhS4YWAmyWCIIpRwUOpU="; + hash = "sha256-fKtPDdeKB3vX2mD+Tsicq8KOkPDSACzKK1XLyugdPQ4="; }; propagatedBuildInputs = [ @@ -54,6 +54,12 @@ buildPythonPackage rec { preCheck = '' export HOME=$TMPDIR + '' + # Otherwise, the backprop hangs forever. More precisely, this exact line: + # https://github.com/open-mmlab/mmengine/blob/02f80e8bdd38f6713e04a872304861b02157905a/tests/test_runner/test_activation_checkpointing.py#L46 + # Solution suggested in https://github.com/pytorch/pytorch/issues/91547#issuecomment-1370011188 + + '' + export MKL_NUM_THREADS=1 ''; pythonImportsCheck = [ @@ -77,6 +83,14 @@ buildPythonPackage rec { "test_lazy_import" # AssertionError "test_lazy_module" + + # Require unpackaged aim + "test_experiment" + "test_add_config" + "test_add_image" + "test_add_scalar" + "test_add_scalars" + "test_close" ]; meta = with lib; { diff --git a/pkgs/development/python-modules/mmh3/default.nix b/pkgs/development/python-modules/mmh3/default.nix index 73f38bbca2587..9aff484888ab5 100644 --- a/pkgs/development/python-modules/mmh3/default.nix +++ b/pkgs/development/python-modules/mmh3/default.nix @@ -6,14 +6,14 @@ buildPythonPackage rec { pname = "mmh3"; - version = "4.0.1"; + version = "4.1.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-rYvmldxORKeWMXSLpVYtgD8KxC02prl6U6yoSnCAk4U="; + hash = "sha256-oc8lNIuazSKd2kZKCU1hcPR9KFCh/Ldio7YXLSzmyko="; }; pythonImportsCheck = [ diff --git a/pkgs/development/python-modules/mobi/default.nix b/pkgs/development/python-modules/mobi/default.nix index 262e724a7b531..fae5b97bb1145 100644 --- a/pkgs/development/python-modules/mobi/default.nix +++ b/pkgs/development/python-modules/mobi/default.nix @@ -39,6 +39,6 @@ buildPythonPackage rec { description = "Library for unpacking unencrypted mobi files"; homepage = "https://github.com/iscc/mobi"; license = licenses.gpl3Only; - maintainers = with maintainers; [ paveloom ]; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/development/python-modules/moderngl/default.nix b/pkgs/development/python-modules/moderngl/default.nix index 917e688d23cdf..f2ff8760f02e7 100644 --- a/pkgs/development/python-modules/moderngl/default.nix +++ b/pkgs/development/python-modules/moderngl/default.nix @@ -9,14 +9,14 @@ buildPythonPackage rec { pname = "moderngl"; - version = "5.9.0"; + version = "5.10.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-R7yZYSwhSJuhL1Qcna4k526KSSgzBk6P7p6zuumlZJo="; + hash = "sha256-EZyNNk3ePNjRwJ8jftSRZhe6dZlUoZUt9GlOUe5PZRE="; }; buildInputs = [ diff --git a/pkgs/development/python-modules/moderngl_window/default.nix b/pkgs/development/python-modules/moderngl_window/default.nix index f4e1d6a04de59..34b1b650da08a 100644 --- a/pkgs/development/python-modules/moderngl_window/default.nix +++ b/pkgs/development/python-modules/moderngl_window/default.nix @@ -2,6 +2,7 @@ , stdenv , buildPythonPackage , fetchFromGitHub +, pythonRelaxDepsHook , setuptools , glfw , moderngl @@ -32,7 +33,12 @@ buildPythonPackage rec { hash = "sha256-OfvIxezeZyuv5LLbe+4o1X2UCGnXT2DNvAF7t2Isw6Y="; }; + pythonRelaxDeps = [ + "pillow" + ]; + nativeBuildInputs = [ + pythonRelaxDepsHook setuptools ]; diff --git a/pkgs/development/python-modules/monai-deploy/default.nix b/pkgs/development/python-modules/monai-deploy/default.nix index e3a4f2418d161..74b88ca8dc735 100644 --- a/pkgs/development/python-modules/monai-deploy/default.nix +++ b/pkgs/development/python-modules/monai-deploy/default.nix @@ -1,13 +1,14 @@ { lib , buildPythonPackage +, colorama , fetchFromGitHub -, pythonOlder -, pytestCheckHook -, pytest-lazy-fixture -, numpy , networkx +, numpy , pydicom -, colorama +, pytest-lazy-fixture +, pytestCheckHook +, pythonOlder +, setuptools , typeguard , versioneer }: @@ -29,10 +30,14 @@ buildPythonPackage rec { postPatch = '' # Asked in https://github.com/Project-MONAI/monai-deploy-app-sdk/issues/450 # if this patch can be incorporated upstream. - substituteInPlace pyproject.toml --replace 'versioneer-518' 'versioneer' + substituteInPlace pyproject.toml \ + --replace 'versioneer-518' 'versioneer' ''; - nativeBuildInputs = [ versioneer ]; + nativeBuildInputs = [ + versioneer + setuptools + ]; propagatedBuildInputs = [ numpy @@ -41,11 +46,16 @@ buildPythonPackage rec { typeguard ]; - nativeCheckInputs = [ pytestCheckHook pytest-lazy-fixture ]; + nativeCheckInputs = [ + pytestCheckHook + pytest-lazy-fixture + ]; + disabledTests = [ # requires Docker daemon: "test_packager" ]; + pythonImportsCheck = [ "monai.deploy" "monai.deploy.core" @@ -57,7 +67,8 @@ buildPythonPackage rec { meta = with lib; { description = "Framework and tools to design, develop and verify AI applications in healthcare imaging"; homepage = "https://monai.io/deploy.html"; + changelog = "https://github.com/Project-MONAI/monai-deploy-app-sdk/blob/main/docs/source/release_notes/v${version}.md"; license = licenses.asl20; - maintainers = [ maintainers.bcdarwin ]; + maintainers = with maintainers; [ bcdarwin ]; }; } diff --git a/pkgs/development/python-modules/monty/default.nix b/pkgs/development/python-modules/monty/default.nix index 8e9ac1b408d23..80256a11bfdb4 100644 --- a/pkgs/development/python-modules/monty/default.nix +++ b/pkgs/development/python-modules/monty/default.nix @@ -9,22 +9,24 @@ , pytestCheckHook , pythonOlder , ruamel-yaml +, setuptools +, setuptools-scm , torch , tqdm }: buildPythonPackage rec { pname = "monty"; - version = "2023.11.3"; - format = "setuptools"; + version = "2024.2.2"; + pyproject = true; - disabled = pythonOlder "3.7"; + disabled = pythonOlder "3.9"; src = fetchFromGitHub { owner = "materialsvirtuallab"; - repo = pname; + repo = "monty"; rev = "refs/tags/v${version}"; - hash = "sha256-SENrAHCCWYEMWqPQSy61E8bMYkCBJepK5otb7B7UGXA="; + hash = "sha256-tKt0IMUmx1WvnQ27PyeyEEGekOKGY33YX4af1/ipbk4="; }; postPatch = '' @@ -32,6 +34,11 @@ buildPythonPackage rec { --replace 'self.assertEqual("/usr/bin/find", which("/usr/bin/find"))' '#' ''; + nativeBuildInputs = [ + setuptools + setuptools-scm + ]; + propagatedBuildInputs = [ msgpack ruamel-yaml diff --git a/pkgs/development/python-modules/mpd2/default.nix b/pkgs/development/python-modules/mpd2/default.nix index 4957b392e56fd..ce87b43c5fb02 100644 --- a/pkgs/development/python-modules/mpd2/default.nix +++ b/pkgs/development/python-modules/mpd2/default.nix @@ -2,22 +2,27 @@ , buildPythonPackage , fetchPypi , pythonOlder +, setuptools , twisted , unittestCheckHook }: buildPythonPackage rec { pname = "python-mpd2"; - version = "3.1.0"; - format = "setuptools"; + version = "3.1.1"; + pyproject = true; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - hash = "sha256-8zws2w1rqnSjZyTzjBxKCZp84sjsSiu3GSFQpYVd9HY="; + hash = "sha256-S67DWEzEPtmUjVVZB5+vwmebBrKt4nPpCbNYJlSys/U="; }; + nativeBuildInputs = [ + setuptools + ]; + passthru.optional-dependencies = { twisted = [ twisted diff --git a/pkgs/development/python-modules/mpi4py/default.nix b/pkgs/development/python-modules/mpi4py/default.nix index f41519c001124..deb54ab149be8 100644 --- a/pkgs/development/python-modules/mpi4py/default.nix +++ b/pkgs/development/python-modules/mpi4py/default.nix @@ -25,11 +25,11 @@ buildPythonPackage rec { configurePhase = ""; installPhase = '' - mkdir -p "$out/lib/${python.libPrefix}/site-packages" - export PYTHONPATH="$out/lib/${python.libPrefix}/site-packages:$PYTHONPATH" + mkdir -p "$out/${python.sitePackages}" + export PYTHONPATH="$out/${python.sitePackages}:$PYTHONPATH" ${python}/bin/${python.executable} setup.py install \ - --install-lib=$out/lib/${python.libPrefix}/site-packages \ + --install-lib=$out/${python.sitePackages} \ --prefix="$out" # --install-lib: diff --git a/pkgs/development/python-modules/mplhep/default.nix b/pkgs/development/python-modules/mplhep/default.nix index c39b24a17f314..e550285ccaac4 100644 --- a/pkgs/development/python-modules/mplhep/default.nix +++ b/pkgs/development/python-modules/mplhep/default.nix @@ -16,12 +16,12 @@ buildPythonPackage rec { pname = "mplhep"; - version = "0.3.31"; + version = "0.3.32"; format = "pyproject"; src = fetchPypi { inherit pname version; - hash = "sha256-aZwazbDljRncB2p7qD95Cms0uQBU8tciUrXcKpsyVTM="; + hash = "sha256-xwlrMZLJKRW6iqMsDKS5BDqejADSk/qGOAnQDZ2fTPc="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/msal-extensions/default.nix b/pkgs/development/python-modules/msal-extensions/default.nix index 65894b665cf20..0c7fad002e89f 100644 --- a/pkgs/development/python-modules/msal-extensions/default.nix +++ b/pkgs/development/python-modules/msal-extensions/default.nix @@ -1,46 +1,47 @@ -{ buildPythonPackage -, fetchPypi -, lib -, isPy27 - -# pythonPackages +{ lib +, buildPythonPackage +, fetchFromGitHub , msal -, pathlib2 , portalocker +, setuptools +, pythonOlder }: buildPythonPackage rec { pname = "msal-extensions"; - version = "1.0.0"; - format = "setuptools"; + version = "1.1.0"; + pyproject = true; + + disabled = pythonOlder "3.7"; - src = fetchPypi { - inherit pname version; - hash = "sha256-xnarpWsMzjeD3htcXs/oKNuZgWeHUSbKS0fcZDZFE1Q="; + src = fetchFromGitHub { + owner = "AzureAD"; + repo = "microsoft-authentication-extensions-for-python"; + rev = "refs/tags/${version}"; + hash = "sha256-ScInTvOgFxP5mgep5FRu6YZHPTtXhrcZGFE7Wdvcm4c="; }; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ msal portalocker - ] ++ lib.optionals isPy27 [ - pathlib2 ]; - # upstream doesn't update this requirement probably because they use pip - postPatch = '' - substituteInPlace setup.py \ - --replace "portalocker~=1.0" "portalocker" - ''; - # No tests found doCheck = false; + pythonImportsCheck = [ + "msal_extensions" + ]; + meta = with lib; { description = "The Microsoft Authentication Library Extensions (MSAL-Extensions) for Python"; homepage = "https://github.com/AzureAD/microsoft-authentication-extensions-for-python"; + changelog = "https://github.com/AzureAD/microsoft-authentication-extensions-for-python/releases/tag/${version}"; license = licenses.mit; - maintainers = with maintainers; [ - kamadorueda - ]; + maintainers = with maintainers; [ kamadorueda ]; }; } diff --git a/pkgs/development/python-modules/msal/default.nix b/pkgs/development/python-modules/msal/default.nix index c489f5b75b2db..fb6eff799fbfa 100644 --- a/pkgs/development/python-modules/msal/default.nix +++ b/pkgs/development/python-modules/msal/default.nix @@ -1,24 +1,31 @@ { lib +, cryptography , buildPythonPackage , fetchPypi , pyjwt , pythonOlder , requests +, setuptools }: buildPythonPackage rec { pname = "msal"; - version = "1.25.0"; - format = "setuptools"; + version = "1.26.0"; + pyproject = true; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-9EMp/bWfTwRMd5Fko0R0uKRK2eSUCvvEw6Oiu+kDJNk="; + hash = "sha256-IkdWB5/jOL6DhzdoK0n468IKh8HF7q9ZDarkUyuD3hU="; }; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ + cryptography pyjwt requests ] diff --git a/pkgs/development/python-modules/msgspec/default.nix b/pkgs/development/python-modules/msgspec/default.nix index 5af0adeb0300a..6dac69d22db8e 100644 --- a/pkgs/development/python-modules/msgspec/default.nix +++ b/pkgs/development/python-modules/msgspec/default.nix @@ -4,22 +4,27 @@ , msgpack , pytestCheckHook , pythonOlder +, setuptools }: buildPythonPackage rec { pname = "msgspec"; - version = "0.18.5"; - format = "setuptools"; + version = "0.18.6"; + pyproject = true; disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "jcrist"; - repo = pname; + repo = "msgspec"; rev = "refs/tags/${version}"; - hash = "sha256-BcENL1vPCspzYdAHicC5AHs/7xZPWf+Yys37vKgbris="; + hash = "sha256-xqtV60saQNINPMpOnZRSDnicedPSPBUQwPSE5zJGrTo="; }; + nativeBuildInputs = [ + setuptools + ]; + # Requires libasan to be accessible doCheck = false; diff --git a/pkgs/development/python-modules/msoffcrypto-tool/default.nix b/pkgs/development/python-modules/msoffcrypto-tool/default.nix index 4e28e20024527..4bc2e80642e61 100644 --- a/pkgs/development/python-modules/msoffcrypto-tool/default.nix +++ b/pkgs/development/python-modules/msoffcrypto-tool/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "msoffcrypto-tool"; - version = "5.2.0"; + version = "5.3.1"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "nolze"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-9qhTGf4IE8PtTfshnqu2fcctznA+2bWH4jz0dmKtoOo="; + hash = "sha256-aQtEJyG0JGe4eSIRI4OUjJZNDBni6FFyJXXkbeiotSY="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/msprime/default.nix b/pkgs/development/python-modules/msprime/default.nix index 2ec32c255dfa2..cf0f8abb22bec 100644 --- a/pkgs/development/python-modules/msprime/default.nix +++ b/pkgs/development/python-modules/msprime/default.nix @@ -1,42 +1,32 @@ { lib , buildPythonPackage +, demes , fetchPypi -, fetchpatch -, oldest-supported-numpy -, setuptools-scm -, wheel -, pythonOlder , gsl -, numpy , newick -, tskit -, demes -, pytestCheckHook +, numpy +, oldest-supported-numpy , pytest-xdist +, pytestCheckHook +, pythonOlder , scipy +, setuptools-scm +, tskit +, wheel }: buildPythonPackage rec { pname = "msprime"; - version = "1.2.0"; - format = "pyproject"; + version = "1.3.0"; + pyproject = true; + disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; - hash = "sha256-YAJa2f0w2CenKubnYLbP8HodDhabLB2hAkyw/CPkp6o="; + hash = "sha256-eYjGHvlJXDZ+gu/J+52AI8PbKiB6ZEXUORlTrzxCbCk="; }; - patches = [ - # upstream patch fixes 2 failing unittests. remove on update - (fetchpatch { - name = "python311.patch"; - url = "https://github.com/tskit-dev/msprime/commit/639125ec942cb898cf4a80638f229e11ce393fbc.patch"; - hash = "sha256-peli4tdu8Bv21xIa5H8SRdfjQnTMO72IPFqybmSBSO8="; - includes = [ "tests/test_ancestry.py" ]; - }) - ]; - nativeBuildInputs = [ gsl oldest-supported-numpy @@ -60,10 +50,12 @@ buildPythonPackage rec { pytest-xdist scipy ]; + disabledTests = [ "tests/test_ancestry.py::TestSimulator::test_debug_logging" "tests/test_ancestry.py::TestSimulator::test_debug_logging_dtw" ]; + disabledTestPaths = [ "tests/test_demography.py" "tests/test_algorithms.py" @@ -86,6 +78,7 @@ buildPythonPackage rec { meta = with lib; { description = "Simulate genealogical trees and genomic sequence data using population genetic models"; homepage = "https://github.com/tskit-dev/msprime"; + changelog = "https://github.com/tskit-dev/msprime/blob/${version}/CHANGELOG.md"; license = licenses.gpl3Plus; maintainers = with maintainers; [ alxsimon ]; }; diff --git a/pkgs/development/python-modules/mujoco/default.nix b/pkgs/development/python-modules/mujoco/default.nix index 881253845ed6a..3586cec51f60b 100644 --- a/pkgs/development/python-modules/mujoco/default.nix +++ b/pkgs/development/python-modules/mujoco/default.nix @@ -1,20 +1,23 @@ -{ buildPythonPackage +{ absl-py +, buildPythonPackage , cmake +, etils , fetchPypi , glfw , lib , mujoco , numpy , perl -, pkgs , pybind11 +, pyopengl , python , setuptools +, stdenv }: buildPythonPackage rec { pname = "mujoco"; - version = "3.1.0"; + version = "3.1.1"; pyproject = true; @@ -24,13 +27,19 @@ buildPythonPackage rec { # in the project's CI. src = fetchPypi { inherit pname version; - hash = "sha256-rZNVihIuvNJnQWqA5tV9DG5r3/LttWNW6fN2js+fDb8="; + hash = "sha256-ESEnPeL79O0wnllEo9s50B84WyINIOeMRg7E78BpRbM="; }; nativeBuildInputs = [ cmake setuptools ]; dontUseCmakeConfigure = true; buildInputs = [ mujoco pybind11 ]; - propagatedBuildInputs = [ glfw numpy ]; + propagatedBuildInputs = [ + absl-py + etils + glfw + numpy + pyopengl + ]; pythonImportsCheck = [ "${pname}" ]; @@ -48,11 +57,15 @@ buildPythonPackage rec { # E.g. 3.11.2 -> "311" pythonVersionMajorMinor = with lib.versions; "${major python.pythonVersion}${minor python.pythonVersion}"; + + # E.g. "linux-aarch64" + platform = with stdenv.hostPlatform.parsed; + "${kernel.name}-${cpu.name}"; in '' ${perl}/bin/perl -0777 -i -pe "s/GIT_REPO\n.*\n.*GIT_TAG\n.*\n//gm" mujoco/CMakeLists.txt ${perl}/bin/perl -0777 -i -pe "s/(FetchContent_Declare\(\n.*lodepng\n.*)(GIT_REPO.*\n.*GIT_TAG.*\n)(.*\))/\1\3/gm" mujoco/simulate/CMakeLists.txt - build="/build/${pname}-${version}/build/temp.linux-x86_64-cpython-${pythonVersionMajorMinor}/" + build="/build/${pname}-${version}/build/temp.${platform}-cpython-${pythonVersionMajorMinor}/" mkdir -p $build/_deps ln -s ${mujoco.pin.lodepng} $build/_deps/lodepng-src ln -s ${mujoco.pin.eigen3} $build/_deps/eigen-src @@ -63,6 +76,7 @@ buildPythonPackage rec { description = "Python bindings for MuJoCo: a general purpose physics simulator."; homepage = "https://mujoco.org/"; + changelog = "https://github.com/google-deepmind/mujoco/releases/tag/${version}"; license = licenses.asl20; maintainers = with maintainers; [ tmplt ]; }; diff --git a/pkgs/development/python-modules/myjwt/default.nix b/pkgs/development/python-modules/myjwt/default.nix index a54ab560a235d..c310c7efe1a1e 100644 --- a/pkgs/development/python-modules/myjwt/default.nix +++ b/pkgs/development/python-modules/myjwt/default.nix @@ -12,6 +12,7 @@ , pytest-mock , pytestCheckHook , pythonOlder +, pythonRelaxDepsHook , questionary , requests , requests-mock @@ -20,7 +21,7 @@ buildPythonPackage rec { pname = "myjwt"; version = "1.6.1"; - format = "pyproject"; + pyproject = true; disabled = pythonOlder "3.8"; @@ -33,12 +34,17 @@ buildPythonPackage rec { postPatch = '' substituteInPlace pyproject.toml \ - --replace "1.6.0" "${version}" \ - --replace 'cryptography = "^39.0.2"' 'cryptography = "^39.0.0"' + --replace-warn "1.6.0" "${version}" ''; + pythonRelaxDeps = [ + "cryptography" + "questionary" + ]; + nativeBuildInputs = [ poetry-core + pythonRelaxDepsHook ]; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/mypy-boto3-builder/default.nix b/pkgs/development/python-modules/mypy-boto3-builder/default.nix index d63e6f9791e5b..a51b5df67c23b 100644 --- a/pkgs/development/python-modules/mypy-boto3-builder/default.nix +++ b/pkgs/development/python-modules/mypy-boto3-builder/default.nix @@ -9,17 +9,19 @@ , md-toc , mdformat , newversion +, pip , poetry-core , pyparsing , pytestCheckHook , pythonOlder , setuptools +, typing-extensions }: buildPythonPackage rec { pname = "mypy-boto3-builder"; - version = "7.21.0"; - format = "pyproject"; + version = "7.23.1"; + pyproject = true; disabled = pythonOlder "3.10"; @@ -27,7 +29,7 @@ buildPythonPackage rec { owner = "youtype"; repo = "mypy_boto3_builder"; rev = "refs/tags/${version}"; - hash = "sha256-lj9Jkp1AGWIAdGzakpt0BMnmdwe1Uf04PI9sMfEBTbw="; + hash = "sha256-dbf2rHDQSeHEIN31yIm1142Z7AxTZzMf9FGvrWsJblA="; }; nativeBuildInputs = [ @@ -43,8 +45,10 @@ buildPythonPackage rec { md-toc mdformat newversion + pip pyparsing setuptools + typing-extensions ]; nativeCheckInputs = [ diff --git a/pkgs/development/python-modules/nameko/default.nix b/pkgs/development/python-modules/nameko/default.nix new file mode 100644 index 0000000000000..aec20b0f43e71 --- /dev/null +++ b/pkgs/development/python-modules/nameko/default.nix @@ -0,0 +1,71 @@ +{ lib +, buildPythonPackage +, fetchPypi +, pythonOlder + +# install_requires +, dnspython +, eventlet +, kombu +, mock +, packaging +, path +, pyyaml +, requests +, setuptools +, six +, werkzeug +, wrapt +}: + +buildPythonPackage rec { + pname = "nameko"; + version = "2.14.1"; + pyproject = true; + + disabled = pythonOlder "3.9"; + + src = fetchPypi { + inherit pname version; + hash = "sha256-J1NXi7Tca5KAGuozTSkwuX37dEhucF7daRmDBqlGjIg="; + }; + + postPatch = '' + substituteInPlace setup.py --replace "path.py" "path" + ''; + + nativeBuildInputs = [ + setuptools + ]; + + propagatedBuildInputs = [ + dnspython + eventlet + kombu + mock + packaging + path + pyyaml + requests + setuptools + six + werkzeug + wrapt + ]; + + # tests depend on RabbitMQ being installed - https://nameko.readthedocs.io/en/stable/contributing.html#running-the-tests + # and most of the tests are network based + doCheck = false; + + pythonImportsCheck = [ + "nameko" + ]; + + meta = with lib; { + description = "A microservices framework that lets service developers concentrate on application logic and encourages testability"; + homepage = "https://www.nameko.io/"; + changelog = "https://github.com/nameko/nameko/releases/tag/v${version}"; + license = licenses.asl20; + maintainers = with maintainers; [ siddharthdhakane ]; + }; +} diff --git a/pkgs/development/python-modules/napari-npe2/default.nix b/pkgs/development/python-modules/napari-npe2/default.nix index 64659858258bf..95ae7bfb39bb8 100644 --- a/pkgs/development/python-modules/napari-npe2/default.nix +++ b/pkgs/development/python-modules/napari-npe2/default.nix @@ -13,6 +13,7 @@ , pyyaml , rich , typer +, tomli-w }: buildPythonPackage rec { @@ -46,6 +47,7 @@ buildPythonPackage rec { pyyaml rich typer + tomli-w ]; pythonImportsCheck = [ diff --git a/pkgs/development/python-modules/napari-svg/default.nix b/pkgs/development/python-modules/napari-svg/default.nix index 9150abfb252b0..3094327dd422f 100644 --- a/pkgs/development/python-modules/napari-svg/default.nix +++ b/pkgs/development/python-modules/napari-svg/default.nix @@ -3,6 +3,7 @@ , fetchFromGitHub , imageio , napari-plugin-engine +, numpy , pythonOlder , setuptools-scm , vispy @@ -10,16 +11,16 @@ buildPythonPackage rec { pname = "napari-svg"; - version = "0.1.6"; - format = "setuptools"; + version = "0.1.10"; + pyproject = true; disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "napari"; - repo = pname; + repo = "napari-svg"; rev = "refs/tags/v${version}"; - hash = "sha256-lvI6RWT9oUE95vL6WO75CASc/Z+1G5UMm2p8vhqIjA0="; + hash = "sha256-ywN9lUwBFW8zP7ivP7MNTYFbTCcmaZxAuKr056uY68Q="; }; nativeBuildInputs = [ @@ -27,9 +28,10 @@ buildPythonPackage rec { ]; propagatedBuildInputs = [ - vispy - napari-plugin-engine imageio + napari-plugin-engine + numpy + vispy ]; # Circular dependency: napari @@ -38,6 +40,7 @@ buildPythonPackage rec { meta = with lib; { description = "A plugin for writing svg files from napari"; homepage = "https://github.com/napari/napari-svg"; + changelog = "https://github.com/napari/napari-svg/releases/tag/v${version}"; license = licenses.bsd3; maintainers = with maintainers; [ SomeoneSerge ]; }; diff --git a/pkgs/development/python-modules/nbconvert/default.nix b/pkgs/development/python-modules/nbconvert/default.nix index 1242d018adad7..f816abc1d740c 100644 --- a/pkgs/development/python-modules/nbconvert/default.nix +++ b/pkgs/development/python-modules/nbconvert/default.nix @@ -32,14 +32,14 @@ let }; in buildPythonPackage rec { pname = "nbconvert"; - version = "7.14.1"; + version = "7.14.2"; pyproject = true; disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; - hash = "sha256-IMuhDgRI3Hazvr/hrfkjZj47mDONr3e5e0JRHvWohhg="; + hash = "sha256-p/iAj9TggkMWc6xThAAhjdRe/QdvvrB8xuWqWjpOlJ4="; }; # Add $out/share/jupyter to the list of paths that are used to search for diff --git a/pkgs/development/python-modules/ndeflib/default.nix b/pkgs/development/python-modules/ndeflib/default.nix index 3699955627ecb..165aed8942dfc 100644 --- a/pkgs/development/python-modules/ndeflib/default.nix +++ b/pkgs/development/python-modules/ndeflib/default.nix @@ -2,13 +2,15 @@ , buildPythonPackage , fetchFromGitHub , pytestCheckHook +, pythonAtLeast , pythonOlder +, setuptools }: buildPythonPackage rec { pname = "ndeflib"; version = "0.3.3"; - format = "setuptools"; + pyproject = true; disabled = pythonOlder "3.7"; @@ -19,6 +21,10 @@ buildPythonPackage rec { hash = "sha256-cpfztE+/AW7P0J7QeTDfVGYc2gEkr7gzA352hC9bdTM="; }; + nativeBuildInputs = [ + setuptools + ]; + nativeCheckInputs = [ pytestCheckHook ]; @@ -30,11 +36,14 @@ buildPythonPackage rec { disabledTests = [ # AssertionError caused due to wrong size "test_decode_error" + ] ++ lib.optionals (pythonAtLeast "3.12") [ + "test_encode_error" ]; meta = with lib; { description = "Python package for parsing and generating NFC Data Exchange Format messages"; homepage = "https://github.com/nfcpy/ndeflib"; + changelog = "https://github.com/nfcpy/ndeflib/releases/tag/v${version}"; license = licenses.isc; maintainers = with maintainers; [ fab ]; }; diff --git a/pkgs/development/python-modules/neo/default.nix b/pkgs/development/python-modules/neo/default.nix index 3db12e6478389..d23d2fdc57ed8 100644 --- a/pkgs/development/python-modules/neo/default.nix +++ b/pkgs/development/python-modules/neo/default.nix @@ -6,20 +6,23 @@ , packaging , quantities , pythonOlder +, setuptools }: buildPythonPackage rec { pname = "neo"; - version = "0.12.0"; - format = "setuptools"; + version = "0.13.0"; + pyproject = true; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-O2yk/AXf206VPiU+cJlL+7yP4ukJWPvaf6WGDK8/pjo="; + hash = "sha256-VnXR+jgaU8LH7ri16SnsA5neILsLUkU+G5nsbWbckfM="; }; + nativeBuildInputs = [ setuptools ]; + propagatedBuildInputs = [ numpy packaging diff --git a/pkgs/development/python-modules/neo4j/default.nix b/pkgs/development/python-modules/neo4j/default.nix index d79bf9587c538..4db2398c25b50 100644 --- a/pkgs/development/python-modules/neo4j/default.nix +++ b/pkgs/development/python-modules/neo4j/default.nix @@ -1,15 +1,19 @@ { lib , buildPythonPackage , fetchFromGitHub +, numpy +, pandas +, pyarrow , pythonOlder , pytz +, setuptools , tomlkit }: buildPythonPackage rec { pname = "neo4j"; - version = "5.16.0"; - format = "setuptools"; + version = "5.17.0"; + pyproject = true; disabled = pythonOlder "3.7"; @@ -17,14 +21,39 @@ buildPythonPackage rec { owner = "neo4j"; repo = "neo4j-python-driver"; rev = "refs/tags/${version}"; - hash = "sha256-ly/R2ufd5gEkUyfajpeMQblTiKipC9HFtxkWkh16zLo="; + hash = "sha256-BZo4TzFrH1ATl09zRXy+1AFJSBopmByDHe7oITZy7pA="; }; + postPatch = '' + # The dynamic versioning adds a postfix (.dev0) to the version + substituteInPlace pyproject.toml \ + --replace '"tomlkit ~= 0.11.6"' '"tomlkit >= 0.11.6"' \ + --replace 'dynamic = ["version", "readme"]' 'dynamic = ["readme"]' \ + --replace '#readme = "README.rst"' 'version = "${version}"' + ''; + + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ pytz tomlkit ]; + passthru.optional-dependencies = { + numpy = [ + numpy + ]; + pandas = [ + numpy + pandas + ]; + pyarrow = [ + pyarrow + ]; + }; + # Missing dependencies doCheck = false; diff --git a/pkgs/development/python-modules/niaaml/default.nix b/pkgs/development/python-modules/niaaml/default.nix index 4a4f175a89430..bc5d712913b85 100644 --- a/pkgs/development/python-modules/niaaml/default.nix +++ b/pkgs/development/python-modules/niaaml/default.nix @@ -5,28 +5,34 @@ , numpy , pandas , poetry-core -, scikit-learn -, toml-adapt , pytestCheckHook , pythonOlder +, pythonRelaxDepsHook +, scikit-learn +, toml-adapt }: buildPythonPackage rec { pname = "niaaml"; version = "1.1.12"; - format = "pyproject"; + pyproject = true; - disabled = pythonOlder "3.7"; + disabled = pythonOlder "3.9"; src = fetchFromGitHub { owner = "lukapecnik"; repo = "NiaAML"; - rev = version; + rev = "refs/tags/${version}"; hash = "sha256-GAUXEkUOD04DQtRG/RAeeeLmenBd25h18Lmrxbm4X3A="; }; + pythonRelaxDeps = [ + "pandas" + ]; + nativeBuildInputs = [ poetry-core + pythonRelaxDepsHook toml-adapt ]; @@ -54,6 +60,7 @@ buildPythonPackage rec { meta = with lib; { description = "Python automated machine learning framework"; homepage = "https://github.com/lukapecnik/NiaAML"; + changelog = "https://github.com/lukapecnik/NiaAML/releases/tag/${version}"; license = licenses.mit; maintainers = with maintainers; [ firefly-cpp ]; }; diff --git a/pkgs/development/python-modules/niaarm/default.nix b/pkgs/development/python-modules/niaarm/default.nix index 3b03993656138..e69bdd6169f73 100644 --- a/pkgs/development/python-modules/niaarm/default.nix +++ b/pkgs/development/python-modules/niaarm/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "niaarm"; - version = "0.3.5"; + version = "0.3.6"; format = "pyproject"; disabled = pythonOlder "3.9"; @@ -22,7 +22,7 @@ buildPythonPackage rec { owner = "firefly-cpp"; repo = "NiaARM"; rev = "refs/tags/${version}"; - hash = "sha256-E5G1uVDSErqwxTBNQ7qselemW9A3W8sr3ExPEh+1les="; + hash = "sha256-DOTeo5ZPZQR56E78pAKQ3DXarIUHhxXoZu0fISDr6fw="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/niaclass/default.nix b/pkgs/development/python-modules/niaclass/default.nix index 89d8ae746aed6..eca766c67a0f0 100644 --- a/pkgs/development/python-modules/niaclass/default.nix +++ b/pkgs/development/python-modules/niaclass/default.nix @@ -5,28 +5,34 @@ , numpy , pandas , poetry-core -, scikit-learn -, toml-adapt , pytestCheckHook , pythonOlder +, pythonRelaxDepsHook +, scikit-learn +, toml-adapt }: buildPythonPackage rec { pname = "niaclass"; version = "0.1.4"; - format = "pyproject"; + pyproject = true; - disabled = pythonOlder "3.7"; + disabled = pythonOlder "3.9"; src = fetchFromGitHub { owner = "lukapecnik"; repo = "NiaClass"; rev = "refs/tags/${version}"; - sha256 = "sha256-md1e/cOIOQKoB760E5hjzjCsC5tS1CzgqAPTeVtrmuo="; + hash = "sha256-md1e/cOIOQKoB760E5hjzjCsC5tS1CzgqAPTeVtrmuo="; }; + pythonRelaxDeps = [ + "pandas" + ]; + nativeBuildInputs = [ poetry-core + pythonRelaxDepsHook toml-adapt ]; @@ -42,7 +48,7 @@ buildPythonPackage rec { toml-adapt -path pyproject.toml -a change -dep scikit-learn -ver X ''; - checkInputs = [ + nativeCheckInputs = [ pytestCheckHook ]; @@ -53,6 +59,7 @@ buildPythonPackage rec { meta = with lib; { description = "A framework for solving classification tasks using Nature-inspired algorithms"; homepage = "https://github.com/lukapecnik/NiaClass"; + changelog = "https://github.com/lukapecnik/NiaClass/releases/tag/${version}"; license = licenses.mit; maintainers = with maintainers; [ firefly-cpp ]; }; diff --git a/pkgs/development/python-modules/nianet/default.nix b/pkgs/development/python-modules/nianet/default.nix index 4adca2e5b701e..d91f278a59063 100644 --- a/pkgs/development/python-modules/nianet/default.nix +++ b/pkgs/development/python-modules/nianet/default.nix @@ -9,26 +9,27 @@ , pythonOlder , scikit-learn , toml-adapt +, tomli , torch }: buildPythonPackage rec { pname = "nianet"; version = "1.1.4"; - format = "pyproject"; + pyproject = true; - disabled = pythonOlder "3.6"; + disabled = pythonOlder "3.9"; src = fetchFromGitHub { owner = "SasoPavlic"; - repo = pname; - rev = "version_${version}"; + repo = "nianet"; + rev = "refs/tags/version_${version}"; sha256 = "sha256-FZipl6Z9AfiL6WH0kvUn8bVxt8JLdDVlmTSqnyxe0nY="; }; nativeBuildInputs = [ - toml-adapt poetry-core + toml-adapt ]; propagatedBuildInputs = [ @@ -44,8 +45,9 @@ buildPythonPackage rec { toml-adapt -path pyproject.toml -a change -dep torch -ver X ''; - checkInputs = [ + nativeCheckInputs = [ pytestCheckHook + tomli ]; pythonImportsCheck = [ diff --git a/pkgs/development/python-modules/nibabel/default.nix b/pkgs/development/python-modules/nibabel/default.nix index 34066a583646f..3bccab3447418 100644 --- a/pkgs/development/python-modules/nibabel/default.nix +++ b/pkgs/development/python-modules/nibabel/default.nix @@ -20,14 +20,14 @@ buildPythonPackage rec { pname = "nibabel"; - version = "5.1.0"; - format = "pyproject"; + version = "5.2.0"; + pyproject = true; disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; - hash = "sha256-znPKXpVyCechmiI8tx93I1yd8qz00/J/hhujjpSBrFM="; + hash = "sha256-Pfjxq5gdG9kvQzHVZVKNEmq5cX/b1M/mj0P80cK/P1I="; }; nativeBuildInputs = [ @@ -77,13 +77,9 @@ buildPythonPackage rec { export PATH=$out/bin:$PATH ''; - disabledTests = [ - # https://github.com/nipy/nibabel/issues/951 - "test_filenames" - ]; - meta = with lib; { homepage = "https://nipy.org/nibabel"; + changelog = "https://github.com/nipy/nibabel/blob/${version}/Changelog"; description = "Access a multitude of neuroimaging data formats"; license = licenses.mit; maintainers = with maintainers; [ ashgillman ]; diff --git a/pkgs/development/python-modules/nipreps-versions/default.nix b/pkgs/development/python-modules/nipreps-versions/default.nix new file mode 100644 index 0000000000000..1c54ab9d905e4 --- /dev/null +++ b/pkgs/development/python-modules/nipreps-versions/default.nix @@ -0,0 +1,46 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, pythonOlder +, flit-scm +, packaging +, setuptools-scm +, pytestCheckHook +}: + +buildPythonPackage rec { + pname = "nipreps-versions"; + version = "1.0.4"; + pyproject = true; + + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "nipreps"; + repo = "version-schemes"; + rev = "refs/tags/${version}"; + hash = "sha256-B2wtLurzgk59kTooH51a2dewK7aEyA0dAm64Wp+tqhM="; + }; + + env.SETUPTOOLS_SCM_PRETEND_VERSION = version; + + nativeBuildInputs = [ + flit-scm + setuptools-scm + ]; + + propagatedBuildInputs = [ + packaging + ]; + + nativeCheckInputs = [ pytestCheckHook ]; + pythonImportsCheck = [ "nipreps_versions" ]; + + meta = with lib; { + description = "Setuptools_scm plugin for nipreps version schemes"; + homepage = "https://github.com/nipreps/version-schemes"; + changelog = "https://github.com/nipreps/version-schemes/blob/${src.rev}/CHANGES.md"; + license = licenses.asl20; + maintainers = with maintainers; [ bcdarwin ]; + }; +} diff --git a/pkgs/development/python-modules/niworkflows/default.nix b/pkgs/development/python-modules/niworkflows/default.nix new file mode 100644 index 0000000000000..494a834c937aa --- /dev/null +++ b/pkgs/development/python-modules/niworkflows/default.nix @@ -0,0 +1,101 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, hatch-vcs +, hatchling +, pytestCheckHook +, attrs +, importlib-resources +, jinja2 +, looseversion +, matplotlib +, nibabel +, nilearn +, nipype +, nitransforms +, numpy +, packaging +, pandas +, pybids +, pyyaml +, scikit-image +, scipy +, seaborn +, svgutils +, templateflow +, traits +, transforms3d +}: + +buildPythonPackage rec { + pname = "niworkflows"; + version = "1.10.0"; + pyproject = true; + + src = fetchFromGitHub { + owner = "nipreps"; + repo = "niworkflows"; + rev = "refs/tags/${version}"; + hash = "sha256-wQPk9imDvomg+NTWk+VeW1TE2QlvMyi1YYVVaznhktU="; + }; + + postPatch = '' + substituteInPlace pyproject.toml --replace '"traits < 6.4"' '"traits"' + ''; + + nativeBuildInputs = [ + hatch-vcs + hatchling + ]; + + propagatedBuildInputs = [ + attrs + importlib-resources + jinja2 + looseversion + matplotlib + nibabel + nilearn + nipype + nitransforms + numpy + packaging + pandas + pybids + pyyaml + scikit-image + scipy + seaborn + svgutils + templateflow + traits + transforms3d + ]; + + env.SETUPTOOLS_SCM_PRETEND_VERSION = version; + + nativeCheckInputs = [ pytestCheckHook ]; + preCheck = ''export HOME=$(mktemp -d)''; + pytestFlagsArray = [ "niworkflows" ]; + # try to download data: + disabledTests = [ + "test_GenerateCifti" + "ROIsPlot" + "ROIsPlot2" + "test_SimpleShowMaskRPT" + "test_cifti_surfaces_plot" + "niworkflows.utils.misc.get_template_specs" + "niworkflows.interfaces.cifti._prepare_cifti" + ]; + disabledTestPaths = [ "niworkflows/tests/test_registration.py" ]; + + pythonImportsCheck = [ "niworkflows" ]; + + meta = with lib; { + description = "Common workflows for MRI (anatomical, functional, diffusion, etc.)"; + homepage = "https://github.com/nipreps/niworkflows"; + changelog = "https://github.com/nipreps/niworkflows/blob/${src.rev}/CHANGES.rst"; + license = licenses.asl20; + maintainers = with maintainers; [ bcdarwin ]; + }; +} diff --git a/pkgs/development/python-modules/nomadnet/default.nix b/pkgs/development/python-modules/nomadnet/default.nix index 68160474f0780..19488765269b2 100644 --- a/pkgs/development/python-modules/nomadnet/default.nix +++ b/pkgs/development/python-modules/nomadnet/default.nix @@ -1,17 +1,18 @@ { lib , buildPythonPackage -, rns , fetchFromGitHub , lxmf -, urwid , pythonOlder , qrcode +, rns +, setuptools +, urwid }: buildPythonPackage rec { pname = "nomadnet"; - version = "0.4.4"; - format = "setuptools"; + version = "0.4.5"; + pyproject = true; disabled = pythonOlder "3.7"; @@ -19,9 +20,13 @@ buildPythonPackage rec { owner = "markqvist"; repo = "NomadNet"; rev = "refs/tags/${version}"; - hash = "sha256-k2KJSqOIBU1UwcmNgLek+XVI/C1YwOlAg+l/XJvTx5E="; + hash = "sha256-+w/Earu76mMJFp8ALvaDEkZOGJqlKbO7jfpW/xxvd1o="; }; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ rns lxmf diff --git a/pkgs/development/python-modules/nose_warnings_filters/default.nix b/pkgs/development/python-modules/nose-warnings-filters/default.nix index a10302559cb05..4de67b60c468f 100644 --- a/pkgs/development/python-modules/nose_warnings_filters/default.nix +++ b/pkgs/development/python-modules/nose-warnings-filters/default.nix @@ -6,12 +6,13 @@ }: buildPythonPackage rec { - pname = "nose_warnings_filters"; + pname = "nose-warnings-filters"; version = "0.1.5"; format = "setuptools"; src = fetchPypi { - inherit pname version; + pname = "nose_warnings_filters"; + inherit version; sha256 = "17dvfqfy2fm7a5cmiffw2dc3064kpx72fn5mlw01skm2rhn5nv25"; }; diff --git a/pkgs/development/python-modules/nose2/default.nix b/pkgs/development/python-modules/nose2/default.nix index 28dd8df3e263d..de96b74709edc 100644 --- a/pkgs/development/python-modules/nose2/default.nix +++ b/pkgs/development/python-modules/nose2/default.nix @@ -15,14 +15,14 @@ buildPythonPackage rec { pname = "nose2"; - version = "0.14.0"; + version = "0.14.1"; pyproject = true; disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; - hash = "sha256-XCjXcKC5pwKGK9bDdVuizS95lN1RjJguXOKY1/N0ZqQ="; + hash = "sha256-f48Dohyd4sMwFZM6/O9yv45KLV3+w7QAkih95uQbCTo="; }; nativeBuildInputs = [ @@ -45,13 +45,8 @@ buildPythonPackage rec { unittestCheckHook ] ++ lib.flatten (lib.attrValues passthru.optional-dependencies); - preCheck = '' - # https://github.com/nose-devs/nose2/issues/588 - substituteInPlace nose2/tests/functional/test_junitxml_plugin.py \ - --replace "test_skip_reason_in_message" "dont_test_skip_reason_in_message" - ''; - meta = with lib; { + changelog = "https://github.com/nose-devs/nose2/blob/${version}/docs/changelog.rst"; description = "Test runner for Python"; homepage = "https://github.com/nose-devs/nose2"; license = licenses.bsd0; diff --git a/pkgs/development/python-modules/notebook/default.nix b/pkgs/development/python-modules/notebook/default.nix index e26ec900682a6..10b02d1bb6205 100644 --- a/pkgs/development/python-modules/notebook/default.nix +++ b/pkgs/development/python-modules/notebook/default.nix @@ -16,14 +16,14 @@ buildPythonPackage rec { pname = "notebook"; - version = "7.0.6"; + version = "7.0.7"; disabled = pythonOlder "3.8"; format = "pyproject"; src = fetchPypi { inherit pname version; - hash = "sha256-7GETsGUpAZ9/KHgZrwbJeiuvepWsIaj24yGSiY6fmlg="; + hash = "sha256-O8/wDBezrBQu9fQ21QY32TaydM+gtB9qwBdTY96bTgk="; }; postPatch = '' diff --git a/pkgs/development/python-modules/nototools/default.nix b/pkgs/development/python-modules/nototools/default.nix index 1b515b486f5f9..4b20eba21b0a5 100644 --- a/pkgs/development/python-modules/nototools/default.nix +++ b/pkgs/development/python-modules/nototools/default.nix @@ -7,15 +7,15 @@ buildPythonPackage rec { pname = "nototools"; - version = "0.2.17"; + version = "0.2.19"; disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = "googlefonts"; repo = "nototools"; - rev = "v${version}"; - sha256 = "0jxydivqzggirc31jv7b4mrsjkg646zmra5m4h0pk4amgy65rvyp"; + rev = "refs/tags/v${version}"; + sha256 = "sha256-anAz+5PIhGhpFunjV2EVk2CrbXq2U0e+LINYUnS0IKU="; }; postPatch = '' diff --git a/pkgs/development/python-modules/ocrmypdf/default.nix b/pkgs/development/python-modules/ocrmypdf/default.nix index 1104bcc02f823..9b4e1d0287eb5 100644 --- a/pkgs/development/python-modules/ocrmypdf/default.nix +++ b/pkgs/development/python-modules/ocrmypdf/default.nix @@ -25,15 +25,14 @@ , tqdm , typing-extensions , unpaper -, wheel , installShellFiles }: buildPythonPackage rec { pname = "ocrmypdf"; - version = "15.4.4"; + version = "16.0.4"; - disabled = pythonOlder "3.9"; + disabled = pythonOlder "3.10"; pyproject = true; @@ -47,7 +46,7 @@ buildPythonPackage rec { postFetch = '' rm "$out/.git_archival.txt" ''; - hash = "sha256-Ff0OrSJFglVPpSNB0KvDMnatj+P57zWdcVAFaM+Sg0s="; + hash = "sha256-1Bg1R8c5VtJsd8NHd+WWdJRA39Jjgv9JUMcijZm942o="; }; patches = [ @@ -64,7 +63,6 @@ buildPythonPackage rec { nativeBuildInputs = [ setuptools setuptools-scm - wheel installShellFiles ]; diff --git a/pkgs/development/python-modules/oelint-parser/default.nix b/pkgs/development/python-modules/oelint-parser/default.nix index 3b9afa0d6c936..eb3e76a5e518a 100644 --- a/pkgs/development/python-modules/oelint-parser/default.nix +++ b/pkgs/development/python-modules/oelint-parser/default.nix @@ -2,23 +2,27 @@ , nix-update-script , fetchPypi , buildPythonPackage +, deprecated , regex , pip }: buildPythonPackage rec { pname = "oelint-parser"; - version = "2.13.11"; + version = "3.1.0"; format = "setuptools"; src = fetchPypi { inherit version; pname = "oelint_parser"; - hash = "sha256-Hr+2S4AGx0W+rrMFdAlN7/OcDTFYivZVYknD/sHWMDs="; + hash = "sha256-uR90Af/3E8YVZ2ALSVFOkTr59iVw5NkLOnQBm4Us1vk="; }; buildInputs = [ pip ]; - propagatedBuildInputs = [ regex ]; + propagatedBuildInputs = [ + deprecated + regex + ]; pythonImportsCheck = [ "oelint_parser" ]; # Fail to run inside the code the build. diff --git a/pkgs/development/python-modules/onnx/default.nix b/pkgs/development/python-modules/onnx/default.nix index 810ddbf62cf27..7d5e27138ecc1 100644 --- a/pkgs/development/python-modules/onnx/default.nix +++ b/pkgs/development/python-modules/onnx/default.nix @@ -7,13 +7,16 @@ , nbval , numpy , parameterized -, protobuf +, protobuf_21 , pybind11 , pytestCheckHook , pythonOlder , tabulate , typing-extensions , abseil-cpp +, google-re2 +, pillow +, protobuf }: let @@ -39,9 +42,13 @@ in buildPythonPackage rec { buildInputs = [ abseil-cpp + protobuf + google-re2 + pillow ]; propagatedBuildInputs = [ + protobuf_21 protobuf numpy typing-extensions @@ -66,10 +73,6 @@ in buildPythonPackage rec { --replace 'include(googletest)' "" substituteInPlace cmake/unittest.cmake \ --replace 'googletest)' ')' - '' + '' - # remove this override in 1.15 that will enable to set the CMAKE_CXX_STANDARD with cmakeFlags - substituteInPlace CMakeLists.txt \ - --replace 'CMAKE_CXX_STANDARD 11' 'CMAKE_CXX_STANDARD 17' ''; preConfigure = '' diff --git a/pkgs/development/python-modules/open-interpreter/default.nix b/pkgs/development/python-modules/open-interpreter/default.nix new file mode 100644 index 0000000000000..2f256aa327011 --- /dev/null +++ b/pkgs/development/python-modules/open-interpreter/default.nix @@ -0,0 +1,94 @@ +{ lib +, fetchFromGitHub +, buildPythonPackage +, pythonOlder +, pythonRelaxDepsHook +, poetry-core + +, appdirs +, astor +, inquirer +, litellm +, pyyaml +, rich +, six +, tiktoken +, tokentrim +, wget +, psutil +, html2image +, ipykernel +, jupyter-client +, matplotlib +, toml +, posthog +, openai +, setuptools +}: + +buildPythonPackage rec { + pname = "open-interpreter"; + version = "0.2.0"; + pyproject = true; + + disabled = pythonOlder "3.9"; + + src = fetchFromGitHub { + owner = "KillianLucas"; + repo = pname; + rev = "v${version}"; + hash = "sha256-XeJ6cADtyXtqoTXwYJu+i9d3NYbJCLpYOeZYmdImtwI="; + }; + + # Remove unused dependency + postPatch = '' + substituteInPlace pyproject.toml --replace 'git-python = "^1.0.3"' "" + ''; + + pythonRelaxDeps = [ + "tiktoken" + ]; + + nativeBuildInputs = [ + poetry-core + pythonRelaxDepsHook + ]; + + propagatedBuildInputs = [ + appdirs + astor + inquirer + litellm + pyyaml + rich + six + tiktoken + tokentrim + wget + psutil + html2image + ipykernel + jupyter-client + matplotlib + toml + posthog + openai + + # Not explicitly in pyproject.toml but required due to use of `pkgs_resources` + setuptools + ]; + + pythonImportsCheck = [ "interpreter" ]; + + # Most tests required network access + doCheck = false; + + meta = with lib; { + description = "OpenAI's Code Interpreter in your terminal, running locally"; + homepage = "https://github.com/KillianLucas/open-interpreter"; + license = licenses.mit; + changelog = "https://github.com/KillianLucas/open-interpreter/releases/tag/v${version}"; + maintainers = with maintainers; [ happysalada ]; + mainProgram = "interpreter"; + }; +} diff --git a/pkgs/development/python-modules/openai/default.nix b/pkgs/development/python-modules/openai/default.nix index 1488eed8440c3..9093bfe73b5d4 100644 --- a/pkgs/development/python-modules/openai/default.nix +++ b/pkgs/development/python-modules/openai/default.nix @@ -2,7 +2,6 @@ , buildPythonPackage , fetchFromGitHub , pythonOlder -, pythonRelaxDepsHook , hatchling # propagated , httpx @@ -11,6 +10,7 @@ , anyio , distro , sniffio +, cached-property , tqdm # optional , numpy @@ -26,38 +26,32 @@ buildPythonPackage rec { pname = "openai"; - version = "1.6.1"; + version = "1.10.0"; pyproject = true; - disabled = pythonOlder "3.7.1"; src = fetchFromGitHub { owner = "openai"; repo = "openai-python"; rev = "refs/tags/v${version}"; - hash = "sha256-w5jj2XWTAbiu64NerLvDyGe9PybeE/WHkukoWT97SJE="; + hash = "sha256-VffgHJLsfnT3xqELV7Ze1o1rqohKxscC3SDthP8TwzI="; }; nativeBuildInputs = [ hatchling - pythonRelaxDepsHook - ]; - - pythonRelaxDeps = [ - # https://github.com/openai/openai-python/issues/921 - "anyio" ]; propagatedBuildInputs = [ httpx pydantic + typing-extensions anyio distro sniffio tqdm ] ++ lib.optionals (pythonOlder "3.8") [ - typing-extensions + cached-property ]; passthru.optional-dependencies = { @@ -80,15 +74,13 @@ buildPythonPackage rec { dirty-equals ]; - pytestFlagsArray = [ - "-W" "ignore::DeprecationWarning" + disabledTests = [ + # makes network requests + "test_streaming_response" ]; - OPENAI_API_KEY = "sk-foo"; - disabledTestPaths = [ # makes network requests - "tests/test_client.py" "tests/api_resources" ]; diff --git a/pkgs/development/python-modules/openant/default.nix b/pkgs/development/python-modules/openant/default.nix index ed142826160b4..639ea62a17f31 100644 --- a/pkgs/development/python-modules/openant/default.nix +++ b/pkgs/development/python-modules/openant/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "openant-unstable"; - version = "1.2.1"; + version = "1.3.1"; pyproject = true; disabled = pythonOlder "3.7"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "Tigge"; repo = "openant"; rev = "refs/tags/v${version}"; - hash = "sha256-Ook9dwcyWvpaGylVDjBxQ2bnXRUBPYQHo6Wub+ISpwE="; + hash = "sha256-wDtHlkVyD7mMDXZ4LGMgatr9sSlQKVbgkYsKvHGr9Pc="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/openerz-api/default.nix b/pkgs/development/python-modules/openerz-api/default.nix index 7fe8de134b485..698816a62620b 100644 --- a/pkgs/development/python-modules/openerz-api/default.nix +++ b/pkgs/development/python-modules/openerz-api/default.nix @@ -4,23 +4,28 @@ , pytestCheckHook , pythonOlder , requests +, setuptools , testfixtures }: buildPythonPackage rec { pname = "openerz-api"; - version = "0.2.0"; - format = "setuptools"; + version = "0.3.0"; + pyproject = true; disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = "misialq"; - repo = pname; + repo = "openerz-api"; rev = "refs/tags/v${version}"; - hash = "sha256-6q0mKWyTTlNJ/DCeAsck1meM5dQovYBcV2EqmjlABvc="; + hash = "sha256-CwK61StspZJt0TALv76zfibUzlriwp9HRoYOtX9bU+c="; }; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ requests ]; @@ -34,11 +39,6 @@ buildPythonPackage rec { "openerz_api" ]; - disabledTests = [ - # Assertion issue - "test_sensor_make_api_request" - ]; - meta = with lib; { description = "Python module to interact with the OpenERZ API"; homepage = "https://github.com/misialq/openerz-api"; diff --git a/pkgs/development/python-modules/openpyxl/default.nix b/pkgs/development/python-modules/openpyxl/default.nix index 82af53c551190..94252131d9a00 100644 --- a/pkgs/development/python-modules/openpyxl/default.nix +++ b/pkgs/development/python-modules/openpyxl/default.nix @@ -1,22 +1,20 @@ { lib , buildPythonPackage -, fetchFromGitLab -, pythonOlder - -# dependencies , et-xmlfile - -# tests +, fetchFromGitLab , lxml , pandas , pillow , pytestCheckHook +, pythonAtLeast +, pythonOlder +, setuptools }: buildPythonPackage rec { pname = "openpyxl"; version = "3.1.2"; - format = "setuptools"; + pyproject = true; disabled = pythonOlder "3.7"; @@ -24,10 +22,14 @@ buildPythonPackage rec { domain = "foss.heptapod.net"; owner = "openpyxl"; repo = "openpyxl"; - rev = version; + rev = "refs/tags/${version}"; hash = "sha256-SWRbjA83AOLrfe6on2CSb64pH5EWXkfyYcTqWJNBEP0="; }; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ et-xmlfile ]; @@ -40,20 +42,29 @@ buildPythonPackage rec { ]; pytestFlagsArray = [ - # broken since lxml 2.12; https://foss.heptapod.net/openpyxl/openpyxl/-/issues/2116 - "--deselect=openpyxl/chart/tests/test_reader.py::test_read" - "--deselect=openpyxl/comments/tests/test_comment_reader.py::test_read_comments" - "--deselect=openpyxl/drawing/tests/test_spreadsheet_drawing.py::TestSpreadsheetDrawing::test_ignore_external_blip" - "--deselect=openpyxl/packaging/tests/test_manifest.py::TestManifest::test_from_xml" - "--deselect=openpyxl/packaging/tests/test_manifest.py::TestManifest::test_filenames" - "--deselect=openpyxl/packaging/tests/test_manifest.py::TestManifest::test_exts" - "--deselect=openpyxl/styles/tests/test_stylesheet.py::TestStylesheet::test_from_complex" - "--deselect=openpyxl/styles/tests/test_stylesheet.py::TestStylesheet::test_merge_named_styles" - "--deselect=openpyxl/styles/tests/test_stylesheet.py::TestStylesheet::test_unprotected_cell" - "--deselect=openpyxl/styles/tests/test_stylesheet.py::TestStylesheet::test_none_values" - "--deselect=openpyxl/styles/tests/test_stylesheet.py::TestStylesheet::test_rgb_colors" - "--deselect=openpyxl/styles/tests/test_stylesheet.py::TestStylesheet::test_named_styles" - "--deselect=openpyxl/workbook/external_link/tests/test_external.py::test_read_ole_link" + "-W" + "ignore::DeprecationWarning" + ]; + disabledTests = [ + # Tests broken since lxml 2.12; https://foss.heptapod.net/openpyxl/openpyxl/-/issues/2116 + "test_read" + "test_read_comments" + "test_ignore_external_blip" + "test_from_xml" + "test_filenames" + "test_exts" + "test_from_complex" + "test_merge_named_styles" + "test_unprotected_cell" + "test_none_values" + "test_rgb_colors" + "test_named_styles" + "test_read_ole_link" + ] ++ lib.optionals (pythonAtLeast "3.11") [ + "test_broken_sheet_ref" + "test_name_invalid_index" + "test_defined_names_print_area" + "test_no_styles" ]; pythonImportsCheck = [ diff --git a/pkgs/development/python-modules/openstacksdk/default.nix b/pkgs/development/python-modules/openstacksdk/default.nix index 6ad0aeca07d9f..1dca33bba9e11 100644 --- a/pkgs/development/python-modules/openstacksdk/default.nix +++ b/pkgs/development/python-modules/openstacksdk/default.nix @@ -19,14 +19,14 @@ buildPythonPackage rec { pname = "openstacksdk"; - version = "2.0.0"; + version = "2.1.0"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - hash = "sha256-aXy2JRXFSNO3/Fyz+GXiebkw05433OsR2HH4H5+lkeg="; + hash = "sha256-dsm3QKLNYl/MbpJBYU7vKgk0y3I1SlxYcWj4+t7y5nQ="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/opentelemetry-api/default.nix b/pkgs/development/python-modules/opentelemetry-api/default.nix index 72957901af41d..5b59d43e7816f 100644 --- a/pkgs/development/python-modules/opentelemetry-api/default.nix +++ b/pkgs/development/python-modules/opentelemetry-api/default.nix @@ -14,7 +14,7 @@ let self = buildPythonPackage rec { pname = "opentelemetry-api"; - version = "1.21.0"; + version = "1.22.0"; disabled = pythonOlder "3.7"; # to avoid breakage, every package in opentelemetry-python must inherit this version, src, and meta @@ -22,7 +22,7 @@ let owner = "open-telemetry"; repo = "opentelemetry-python"; rev = "refs/tags/v${version}"; - hash = "sha256-igG0oHRa6M4d7pMp7fgBo13x5XADZeYgFAL8WzDXsyw="; + hash = "sha256-6BmBmooVaH1FOpgXpFlYth0r9XaNtmb9UezeP8hWEok="; }; sourceRoot = "${src.name}/opentelemetry-api"; diff --git a/pkgs/development/python-modules/opentelemetry-instrumentation-flask/default.nix b/pkgs/development/python-modules/opentelemetry-instrumentation-flask/default.nix new file mode 100644 index 0000000000000..71860dd8fd741 --- /dev/null +++ b/pkgs/development/python-modules/opentelemetry-instrumentation-flask/default.nix @@ -0,0 +1,45 @@ +{ buildPythonPackage +, flask +, hatchling +, opentelemetry-api +, opentelemetry-instrumentation +, opentelemetry-instrumentation-wsgi +, opentelemetry-semantic-conventions +, opentelemetry-test-utils +, opentelemetry-util-http +, pytestCheckHook +, pythonOlder +}: + +buildPythonPackage { + inherit (opentelemetry-instrumentation) version src; + pname = "opentelemetry-instrumentation-flask"; + disabled = pythonOlder "3.7"; + + sourceRoot = "${opentelemetry-instrumentation.src.name}/instrumentation/opentelemetry-instrumentation-flask"; + + format = "pyproject"; + + nativeBuildInputs = [ hatchling ]; + + propagatedBuildInputs = [ + flask + opentelemetry-api + opentelemetry-instrumentation + opentelemetry-instrumentation-wsgi + opentelemetry-semantic-conventions + opentelemetry-util-http + ]; + + nativeCheckInputs = [ + opentelemetry-test-utils + pytestCheckHook + ]; + + pythonImportsCheck = [ "opentelemetry.instrumentation.flask" ]; + + meta = opentelemetry-instrumentation.meta // { + homepage = "https://github.com/open-telemetry/opentelemetry-python-contrib/blob/main/instrumentation/opentelemetry-instrumentation-flask"; + description = "Flask Middleware for OpenTelemetry based on the WSGI middleware"; + }; +} diff --git a/pkgs/development/python-modules/opentelemetry-instrumentation/default.nix b/pkgs/development/python-modules/opentelemetry-instrumentation/default.nix index 4ee758ea564da..f5e76507d3ab1 100644 --- a/pkgs/development/python-modules/opentelemetry-instrumentation/default.nix +++ b/pkgs/development/python-modules/opentelemetry-instrumentation/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "opentelemetry-instrumentation"; - version = "1.16.0"; + version = "0.43b0"; disabled = pythonOlder "3.7"; # to avoid breakage, every package in opentelemetry-python-contrib must inherit this version, src, and meta @@ -21,7 +21,7 @@ buildPythonPackage rec { owner = "open-telemetry"; repo = "opentelemetry-python-contrib"; rev = "refs/tags/v${version}"; - hash = "sha256-6tGQjPBej2zv5yJN0S46le3kyD7q3TELYyDmyxlp5Wo="; + hash = "sha256-fUyA3cPXAxO506usEWxOUX9xiapc8Ocnbx73LP6ghRE="; }; sourceRoot = "${src.name}/opentelemetry-instrumentation"; diff --git a/pkgs/development/python-modules/opentelemetry-util-http/default.nix b/pkgs/development/python-modules/opentelemetry-util-http/default.nix index 85e28f2a6d49a..e14338ffcbce0 100644 --- a/pkgs/development/python-modules/opentelemetry-util-http/default.nix +++ b/pkgs/development/python-modules/opentelemetry-util-http/default.nix @@ -33,6 +33,12 @@ buildPythonPackage { pytestCheckHook ]; + # https://github.com/open-telemetry/opentelemetry-python-contrib/issues/1940 + disabledTests = [ + "test_nonstandard_method" + "test_nonstandard_method_allowed" + ]; + pythonImportsCheck = [ "opentelemetry.util.http" ]; meta = opentelemetry-instrumentation.meta // { diff --git a/pkgs/development/python-modules/openusd/default.nix b/pkgs/development/python-modules/openusd/default.nix index 70ae6eb5e08b4..f97a9f425ecd4 100644 --- a/pkgs/development/python-modules/openusd/default.nix +++ b/pkgs/development/python-modules/openusd/default.nix @@ -23,7 +23,7 @@ , ptex , embree , alembic -, openexr +, imath , flex , bison , qt6 @@ -94,7 +94,7 @@ buildPythonPackage rec { ptex embree alembic.dev - openexr + imath flex bison boost diff --git a/pkgs/development/python-modules/openwebifpy/default.nix b/pkgs/development/python-modules/openwebifpy/default.nix index 48d5ba86ff755..3d2da52076566 100644 --- a/pkgs/development/python-modules/openwebifpy/default.nix +++ b/pkgs/development/python-modules/openwebifpy/default.nix @@ -16,14 +16,14 @@ buildPythonPackage rec { pname = "openwebifpy"; - version = "4.0.4"; + version = "4.2.1"; pyproject = true; disabled = pythonOlder "3.11"; src = fetchPypi { inherit pname version; - hash = "sha256-mGCi3nFnyzA+yKD5qtpErXYjOA6liZRiy7qJTbTGGnQ="; + hash = "sha256-dCgbMyyVmYGPV8GyZUrMR+IO8nGoQ//dnmHmhFH2iJo="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/opower/default.nix b/pkgs/development/python-modules/opower/default.nix index 9c35a3c5491f1..6e5225d17337c 100644 --- a/pkgs/development/python-modules/opower/default.nix +++ b/pkgs/development/python-modules/opower/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "opower"; - version = "0.2.0"; + version = "0.3.0"; pyproject = true; disabled = pythonOlder "3.9"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "tronikos"; repo = "opower"; rev = "refs/tags/v${version}"; - hash = "sha256-OT+QCbHQbL3vCfPuyzxBKqUJ2EtFn+PslrKGlrC6Ip8="; + hash = "sha256-YqNHjGJ0BkF8/1LVDqbw9QoJgPgwbA1sIPJUuP4TTJY="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/optimum/default.nix b/pkgs/development/python-modules/optimum/default.nix index 42fb645ed0978..ad542017d1f03 100644 --- a/pkgs/development/python-modules/optimum/default.nix +++ b/pkgs/development/python-modules/optimum/default.nix @@ -22,7 +22,7 @@ buildPythonPackage rec { pname = "optimum"; - version = "1.16.1"; + version = "1.16.2"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -31,7 +31,7 @@ buildPythonPackage rec { owner = "huggingface"; repo = "optimum"; rev = "refs/tags/v${version}"; - hash = "sha256-UlxArfNK4Ialodpne5GY7GuWGUBcLbSjAidL67Li0S0="; + hash = "sha256-bEwCUPZJT1UTD8mQJKg+Nwag6kpn4076uyKocKI/+/M="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/oras/default.nix b/pkgs/development/python-modules/oras/default.nix index 6dd42eeca3db1..c43a92524e01d 100644 --- a/pkgs/development/python-modules/oras/default.nix +++ b/pkgs/development/python-modules/oras/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "oras"; - version = "0.1.26"; + version = "0.1.27"; pyproject = true; disabled = pythonOlder "3.7"; @@ -19,7 +19,7 @@ buildPythonPackage rec { owner = "oras-project"; repo = "oras-py"; rev = "refs/tags/${version}"; - hash = "sha256-t3098ZeAkwLhinyrFwmi7KKrFgZZKPN6qvp3REQNwG8="; + hash = "sha256-T2zuflew91UsEjhPKPjNxPBN+C//S1vWvXKVT602EVI="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/oslo-context/default.nix b/pkgs/development/python-modules/oslo-context/default.nix index 35664a9041c63..902c244c488b9 100644 --- a/pkgs/development/python-modules/oslo-context/default.nix +++ b/pkgs/development/python-modules/oslo-context/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { pname = "oslo.context"; - version = "5.1.1"; + version = "5.3.0"; src = fetchPypi { inherit pname version; - hash = "sha256-Ly55FxBE79GAfFVxPtLH9AaLGNc9AngZFlxIGbKHz68="; + hash = "sha256-xRBxQcYotq5W1P62MiucSnAJL9ahgekfq+relKCeTjg="; }; postPatch = '' diff --git a/pkgs/development/python-modules/oslo-db/default.nix b/pkgs/development/python-modules/oslo-db/default.nix index 708bbd62c36fa..0e7a5abedda57 100644 --- a/pkgs/development/python-modules/oslo-db/default.nix +++ b/pkgs/development/python-modules/oslo-db/default.nix @@ -2,14 +2,17 @@ , buildPythonPackage , fetchPypi , alembic +, debtcollector , oslo-config , oslo-context +, oslo-i18n , oslo-utils , oslotest , pbr +, psycopg2 , setuptools , sqlalchemy -, sqlalchemy-migrate +, stevedore , stestr , testresources , testscenarios @@ -33,18 +36,21 @@ buildPythonPackage rec { propagatedBuildInputs = [ alembic + debtcollector oslo-config - oslo-context + oslo-i18n oslo-utils sqlalchemy - sqlalchemy-migrate - testresources - testscenarios + stevedore ]; nativeCheckInputs = [ + oslo-context oslotest stestr + psycopg2 + testresources + testscenarios ]; checkPhase = '' diff --git a/pkgs/development/python-modules/pamqp/default.nix b/pkgs/development/python-modules/pamqp/default.nix index 62c568e64818f..b3ad60e7d1c81 100644 --- a/pkgs/development/python-modules/pamqp/default.nix +++ b/pkgs/development/python-modules/pamqp/default.nix @@ -2,24 +2,29 @@ , buildPythonPackage , pythonOlder , fetchFromGitHub +, setuptools , pytestCheckHook }: buildPythonPackage rec { - version = "3.2.1"; + version = "3.3.0"; pname = "pamqp"; disabled = pythonOlder "3.7"; - format = "setuptools"; + pyproject = true; src = fetchFromGitHub { owner = "gmr"; repo = "pamqp"; rev = version; - hash = "sha256-zvvRoGMNP4NMy3Etjif5MYUPdRqmQXATbFgxaPp1TaM="; + hash = "sha256-0vjiPBLd8afnATjmV2sINsBd4j7L544u5DA3jLiLSsY="; }; + nativeBuildInputs = [ + setuptools + ]; + nativeCheckInputs = [ pytestCheckHook ]; @@ -38,6 +43,7 @@ buildPythonPackage rec { ]; meta = with lib; { + changelog = "https://github.com/gmr/pamqp/blob/${src.rev}/docs/changelog.rst"; description = "RabbitMQ Focused AMQP low-level library"; homepage = "https://github.com/gmr/pamqp"; license = licenses.bsd3; diff --git a/pkgs/development/python-modules/panel/default.nix b/pkgs/development/python-modules/panel/default.nix index c47cea4567a83..dc7892df32282 100644 --- a/pkgs/development/python-modules/panel/default.nix +++ b/pkgs/development/python-modules/panel/default.nix @@ -16,7 +16,7 @@ buildPythonPackage rec { pname = "panel"; - version = "1.3.4"; + version = "1.3.8"; format = "wheel"; @@ -25,7 +25,7 @@ buildPythonPackage rec { # tries to fetch even more artifacts src = fetchPypi { inherit pname version format; - hash = "sha256-FK/ekqXCtTHyzLeFs0tHEeH0VXk0yFcns1lOLa5z0KU="; + hash = "sha256-Sb85MZhqDd8/e0vaPGXGoxHVJ3UkrNtOC/9py6a/V3U="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/param/default.nix b/pkgs/development/python-modules/param/default.nix index c05f906d5b106..f6bbbf3b78ffb 100644 --- a/pkgs/development/python-modules/param/default.nix +++ b/pkgs/development/python-modules/param/default.nix @@ -16,7 +16,7 @@ buildPythonPackage rec { pname = "param"; - version = "2.0.0"; + version = "2.0.2"; pyproject = true; disabled = pythonOlder "3.7"; @@ -25,7 +25,7 @@ buildPythonPackage rec { owner = "holoviz"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-8R1+utY3e3py4iJTgOVfzt5Y7bp2Rn6OfoITGuOsb5c="; + hash = "sha256-kVuab6+l4KOtSvj6aI9zsQJ91tfCDJkHrSTcRL9SViY="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/parsedmarc/default.nix b/pkgs/development/python-modules/parsedmarc/default.nix index 576b548605579..ac859c0c825f0 100644 --- a/pkgs/development/python-modules/parsedmarc/default.nix +++ b/pkgs/development/python-modules/parsedmarc/default.nix @@ -5,6 +5,7 @@ , buildPythonPackage , dateparser , dnspython +, elastic-transport , elasticsearch , elasticsearch-dsl , expiringdict @@ -51,7 +52,8 @@ buildPythonPackage rec { postPatch = '' substituteInPlace pyproject.toml \ - --replace "elasticsearch<7.14.0" "elasticsearch" + --replace "elasticsearch<7.14.0" "elasticsearch" \ + --replace "elasticsearch-dsl==7.4.0" "elasticsearch-dsl" ''; nativeBuildInputs = [ @@ -64,6 +66,7 @@ buildPythonPackage rec { boto3 dateparser dnspython + elastic-transport elasticsearch elasticsearch-dsl expiringdict @@ -89,7 +92,9 @@ buildPythonPackage rec { # https://github.com/domainaware/parsedmarc/issues/426 doCheck = false; - pythonImportsCheck = [ "parsedmarc" ]; + pythonImportsCheck = [ + "parsedmarc" + ]; passthru = { inherit dashboard; @@ -97,11 +102,11 @@ buildPythonPackage rec { }; meta = with lib; { - changelog = "https://github.com/domainaware/parsedmarc/blob/master/CHANGELOG.md#${lib.replaceStrings [ "." ] [ "" ] version}"; description = "Python module and CLI utility for parsing DMARC reports"; homepage = "https://domainaware.github.io/parsedmarc/"; - mainProgram = "parsedmarc"; - maintainers = with maintainers; [ talyz ]; + changelog = "https://github.com/domainaware/parsedmarc/blob/master/CHANGELOG.md#${lib.replaceStrings [ "." ] [ "" ] version}"; license = licenses.asl20; + maintainers = with maintainers; [ talyz ]; + mainProgram = "parsedmarc"; }; } diff --git a/pkgs/development/python-modules/pastescript/default.nix b/pkgs/development/python-modules/pastescript/default.nix index 27933066c7b72..70094b5aaafb3 100644 --- a/pkgs/development/python-modules/pastescript/default.nix +++ b/pkgs/development/python-modules/pastescript/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "pastescript"; - version = "3.3.0"; + version = "3.4.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -20,7 +20,7 @@ buildPythonPackage rec { src = fetchPypi { pname = "PasteScript"; inherit version; - hash = "sha256-3eyAGhOsZn4JTt3ij5AhLN6nvcmhjUNxsI9abvfS66I="; + hash = "sha256-k0jvBlr/Is8ViMEt+wIMx1HGSC4hb4o8dRL6QKQ/kNw="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pathos/default.nix b/pkgs/development/python-modules/pathos/default.nix index cf9d9eaa48ca3..690734a4e0f8f 100644 --- a/pkgs/development/python-modules/pathos/default.nix +++ b/pkgs/development/python-modules/pathos/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "pathos"; - version = "0.3.1"; + version = "0.3.2"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -18,8 +18,8 @@ buildPythonPackage rec { src = fetchFromGitHub { owner = "uqfoundation"; repo = pname; - rev = "refs/tags/pathos-${version}"; - hash = "sha256-uQv1t3TRbvoQv86wNOdc5k0cgKt9kvnw5/DGbbbE46w="; + rev = "refs/tags/${version}"; + hash = "sha256-b4HCiAvBGkFMxWh2PHC2kZ9G4PsQqVhKeIxLBKj09jU="; }; propagatedBuildInputs = [ @@ -39,7 +39,7 @@ buildPythonPackage rec { meta = with lib; { description = "Parallel graph management and execution in heterogeneous computing"; homepage = "https://pathos.readthedocs.io/"; - changelog = "https://github.com/uqfoundation/pathos/releases/tag/pathos-${version}"; + changelog = "https://github.com/uqfoundation/pathos/releases/tag/${version}"; license = licenses.bsd3; maintainers = with maintainers; [ ]; }; diff --git a/pkgs/development/python-modules/patool/default.nix b/pkgs/development/python-modules/patool/default.nix index d36400970391a..ab4ef91d07a0c 100644 --- a/pkgs/development/python-modules/patool/default.nix +++ b/pkgs/development/python-modules/patool/default.nix @@ -37,7 +37,7 @@ let in buildPythonPackage rec { pname = "patool"; - version = "2.0.0"; + version = "2.1.1"; format = "setuptools"; #pypi doesn't have test data @@ -45,7 +45,7 @@ buildPythonPackage rec { owner = "wummel"; repo = pname; rev = "upstream/${version}"; - hash = "sha256-Hjpifsi5Q1eoe/MFWuQBDyjoXi/aUG4VN84yNMkAZaE="; + hash = "sha256-B2P6JldMOAxr4WS+wST+kRVvEm41zH3Nh5LLKoFOws4="; }; postPatch = '' diff --git a/pkgs/development/python-modules/pbr/default.nix b/pkgs/development/python-modules/pbr/default.nix index dbf6afe6f3302..fed9e7cd81fe3 100644 --- a/pkgs/development/python-modules/pbr/default.nix +++ b/pkgs/development/python-modules/pbr/default.nix @@ -1,6 +1,7 @@ { lib , buildPythonPackage , fetchPypi +, pythonAtLeast , setuptools , callPackage }: @@ -32,6 +33,7 @@ buildPythonPackage rec { description = "Python Build Reasonableness"; homepage = "https://github.com/openstack/pbr"; license = licenses.asl20; + broken = pythonAtLeast "3.12"; # uses removed distutils maintainers = teams.openstack.members; }; } diff --git a/pkgs/development/python-modules/pdfrw2/default.nix b/pkgs/development/python-modules/pdfrw2/default.nix new file mode 100644 index 0000000000000..6ed93640af7e6 --- /dev/null +++ b/pkgs/development/python-modules/pdfrw2/default.nix @@ -0,0 +1,38 @@ +{ lib +, buildPythonPackage +, fetchPypi +, pillow +, pycryptodome +, reportlab +, setuptools +}: + +buildPythonPackage rec { + pname = "pdfrw2"; + version = "0.5.0"; + pyproject = true; + + src = fetchPypi { + inherit pname version; + hash = "sha256-5qnMq4Pnaaeov+Lb3fD0ndfr5SAy6SlXTwG7v6IZce0="; + }; + + nativeBuildInputs = [ + setuptools + ]; + + propagatedBuildInputs = [ + pillow + reportlab + pycryptodome + ]; + + pythonImportCheck = [ "pdfrw" ]; + + meta = with lib; { + description = "Pure Python library that reads and writes PDFs"; + homepage = "https://github.com/sarnold/pdfrw"; + maintainers = with maintainers; [ loicreynier ]; + license = licenses.mit; + }; +} diff --git a/pkgs/development/python-modules/pdoc-pyo3-sample-library/default.nix b/pkgs/development/python-modules/pdoc-pyo3-sample-library/default.nix new file mode 100644 index 0000000000000..37fd1d1378dc0 --- /dev/null +++ b/pkgs/development/python-modules/pdoc-pyo3-sample-library/default.nix @@ -0,0 +1,49 @@ +{ lib +, stdenv +, buildPythonPackage +, fetchPypi +, rustPlatform +, cargo +, rustc +, libiconv +}: + +buildPythonPackage rec { + pname = "pdoc-pyo3-sample-library"; + version = "1.0.11"; + pyproject = true; + + src = fetchPypi { + pname = "pdoc_pyo3_sample_library"; + inherit version; + hash = "sha256-ZGMo7WgymkSDQu8tc4rTfWNsIWO0AlDPG0OzpKRq3oA="; + }; + + cargoDeps = rustPlatform.fetchCargoTarball { + inherit pname version src; + hash = "sha256-KrEBr998AV/bKcIoq0tX72/QwPD9bQplrS0Zw+JiSMQ="; + }; + + nativeBuildInputs = [ + rustPlatform.cargoSetupHook + rustPlatform.maturinBuildHook + cargo + rustc + ]; + + buildInputs = lib.optionals stdenv.isDarwin [ + libiconv + ]; + + pythonImportsCheck = [ "pdoc_pyo3_sample_library" ]; + + # no tests + doCheck = false; + + meta = { + description = "A sample PyO3 library used in pdoc tests"; + homepage = "https://github.com/mitmproxy/pdoc-pyo3-sample-library"; + license = lib.licenses.mit; + maintainers = [ lib.maintainers.pbsds ]; + }; +} diff --git a/pkgs/development/python-modules/pdoc/default.nix b/pkgs/development/python-modules/pdoc/default.nix index 621c2842e70c4..0c570aa6165ce 100644 --- a/pkgs/development/python-modules/pdoc/default.nix +++ b/pkgs/development/python-modules/pdoc/default.nix @@ -4,6 +4,7 @@ , fetchFromGitHub , setuptools , jinja2 +, pdoc-pyo3-sample-library , pygments , markupsafe , astunparse @@ -13,16 +14,16 @@ buildPythonPackage rec { pname = "pdoc"; - version = "14.1.0"; + version = "14.2.0"; disabled = pythonOlder "3.8"; - format = "pyproject"; + pyproject = true; src = fetchFromGitHub { owner = "mitmproxy"; repo = "pdoc"; rev = "v${version}"; - hash = "sha256-LQXhdzocw01URrmpDayK9rpsArvM/E44AE8Eok9DBwk="; + hash = "sha256-Mmmq4jqRQow+1jn5ZDVMtP1uxrYgHJK/IQrwFWNw8ag="; }; nativeBuildInputs = [ @@ -38,6 +39,7 @@ buildPythonPackage rec { nativeCheckInputs = [ pytestCheckHook hypothesis + pdoc-pyo3-sample-library ]; disabledTestPaths = [ # "test_snapshots" tries to match generated output against stored snapshots, diff --git a/pkgs/development/python-modules/pegen/default.nix b/pkgs/development/python-modules/pegen/default.nix index 9ac25c2880b61..4f348a2f00976 100644 --- a/pkgs/development/python-modules/pegen/default.nix +++ b/pkgs/development/python-modules/pegen/default.nix @@ -35,7 +35,10 @@ buildPythonPackage rec { "pegen" ]; - disabledTests = lib.optionals (pythonAtLeast "3.11") [ + disabledTests = [ + # ValueError: Expected locations of (1, 3) and... + "test_invalid_call_arguments" + ] ++ lib.optionals (pythonAtLeast "3.11") [ # https://github.com/we-like-parsers/pegen/issues/89 "test_invalid_def_stmt" ]; diff --git a/pkgs/development/python-modules/pex/default.nix b/pkgs/development/python-modules/pex/default.nix index 6630d8139a36c..2d587401e06a2 100644 --- a/pkgs/development/python-modules/pex/default.nix +++ b/pkgs/development/python-modules/pex/default.nix @@ -1,24 +1,24 @@ { lib , buildPythonPackage , fetchPypi -, flit-core +, setuptools , pythonOlder }: buildPythonPackage rec { pname = "pex"; - version = "2.1.156"; + version = "2.1.159"; pyproject = true; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-VC7LRXwh9a6Pp0mJQJjhxU6GOWKO/ucOzn+J2mAqpMI="; + hash = "sha256-hBlwfyQ1PbD6AyCsra2yZwt0x8+iGtDisU9coTSJRZI="; }; nativeBuildInputs = [ - flit-core + setuptools ]; # A few more dependencies I don't want to handle right now... diff --git a/pkgs/development/python-modules/pglast/default.nix b/pkgs/development/python-modules/pglast/default.nix index 883def3b068b9..4a3e4794bd77a 100644 --- a/pkgs/development/python-modules/pglast/default.nix +++ b/pkgs/development/python-modules/pglast/default.nix @@ -8,14 +8,14 @@ buildPythonPackage rec { pname = "pglast"; - version = "5.8"; + version = "6.2"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-+3ysQuGrAH5xCBKaP0T/PLfbmLuxiKHPB+76D32GG9E="; + hash = "sha256-mGP7o52Wun6AdE2jMAJBmLR10EmN50qzbMzB06BFXMg="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pikepdf/default.nix b/pkgs/development/python-modules/pikepdf/default.nix index 4ba20f5aef315..386f64718eb09 100644 --- a/pkgs/development/python-modules/pikepdf/default.nix +++ b/pkgs/development/python-modules/pikepdf/default.nix @@ -7,7 +7,7 @@ , jbig2dec , deprecated , lxml -, mupdf +, mupdf-headless , numpy , packaging , pillow @@ -20,12 +20,11 @@ , qpdf , setuptools , substituteAll -, wheel }: buildPythonPackage rec { pname = "pikepdf"; - version = "8.9.0"; + version = "8.11.2"; pyproject = true; disabled = pythonOlder "3.8"; @@ -40,14 +39,14 @@ buildPythonPackage rec { postFetch = '' rm "$out/.git_archival.txt" ''; - hash = "sha256-ia+D0OeB/MQWRniYkBEWZsDCwEApYGgu0++I/HupK6w="; + hash = "sha256-mxUXXD7/ERC6mfmLLo+zdsVblIplrlcnzTNQ7YUk3Q4="; }; patches = [ (substituteAll { src = ./paths.patch; - jbig2dec = "${lib.getBin jbig2dec}/bin/jbig2dec"; - mudraw = "${lib.getBin mupdf}/bin/mudraw"; + jbig2dec = lib.getExe' jbig2dec "jbig2dec"; + mutool = lib.getExe' mupdf-headless "mutool"; }) ]; @@ -63,7 +62,6 @@ buildPythonPackage rec { nativeBuildInputs = [ pybind11 setuptools - wheel ]; nativeCheckInputs = [ diff --git a/pkgs/development/python-modules/pikepdf/paths.patch b/pkgs/development/python-modules/pikepdf/paths.patch index c9c61176aa6f4..1bd030c186c23 100644 --- a/pkgs/development/python-modules/pikepdf/paths.patch +++ b/pkgs/development/python-modules/pikepdf/paths.patch @@ -1,18 +1,18 @@ diff --git a/src/pikepdf/_methods.py b/src/pikepdf/_methods.py -index d27c660..6796984 100644 +index da40043f..4f566f01 100644 --- a/src/pikepdf/_methods.py +++ b/src/pikepdf/_methods.py -@@ -72,7 +72,7 @@ def _mudraw(buffer, fmt) -> bytes: +@@ -74,7 +74,7 @@ def _mudraw(buffer, fmt) -> bytes: tmp_in.flush() proc = run( -- ['mudraw', '-F', fmt, '-o', '-', tmp_in.name], -+ ['@mudraw@', '-F', fmt, '-o', '-', tmp_in.name], +- ['mutool', 'draw', '-F', fmt, '-o', '-', tmp_in.name], ++ ['@mutool@', 'draw', '-F', fmt, '-o', '-', tmp_in.name], capture_output=True, check=True, ) diff --git a/src/pikepdf/jbig2.py b/src/pikepdf/jbig2.py -index f89b4f9..f187ebd 100644 +index f89b4f90..f187ebdf 100644 --- a/src/pikepdf/jbig2.py +++ b/src/pikepdf/jbig2.py @@ -63,7 +63,7 @@ class JBIG2Decoder(JBIG2DecoderInterface): diff --git a/pkgs/development/python-modules/pinecone-client/default.nix b/pkgs/development/python-modules/pinecone-client/default.nix index 2b75974996320..2715e1748051e 100644 --- a/pkgs/development/python-modules/pinecone-client/default.nix +++ b/pkgs/development/python-modules/pinecone-client/default.nix @@ -2,6 +2,8 @@ , buildPythonPackage , fetchPypi , setuptools +, poetry-core +, pythonRelaxDepsHook , numpy , pyyaml , python-dateutil @@ -14,16 +16,19 @@ }: buildPythonPackage rec { pname = "pinecone-client"; - version = "2.2.5"; + version = "3.0.2"; pyproject = true; src = fetchPypi { - inherit pname version; - hash = "sha256-F2mWUpFMn2ipopa3UjvzrmNZsHtdRrUwfkuHbDYBElo="; + pname = "pinecone_client"; + inherit version; + hash = "sha256-+aCDAzPuzhB7TvERneI9rWphv/q38jjmGEFtUcRtKcg="; }; nativeBuildInputs = [ setuptools + poetry-core + pythonRelaxDepsHook ]; propagatedBuildInputs = [ @@ -38,12 +43,20 @@ buildPythonPackage rec { loguru ]; + pythonRelaxDeps = [ + "urllib3" + ]; + doCheck = false; + pythonImportsCheck = [ + "pinecone" + ]; + meta = with lib; { homepage = "https://www.pinecone.io/"; description = "The Pinecone python client"; license = licenses.mit; - maintainers = with maintainers; [happysalada]; + maintainers = with maintainers; [ happysalada ]; }; } diff --git a/pkgs/development/python-modules/pins/default.nix b/pkgs/development/python-modules/pins/default.nix new file mode 100644 index 0000000000000..3d02d7b03728b --- /dev/null +++ b/pkgs/development/python-modules/pins/default.nix @@ -0,0 +1,104 @@ +{ lib +, adlfs +, appdirs +, buildPythonPackage +, fastparquet +, fetchFromGitHub +, fsspec +, gcsfs +, humanize +, importlib-metadata +, importlib-resources +, jinja2 +, joblib +, pandas +, pyarrow +, pytest-cases +, pytest-parallel +, pytestCheckHook +, pythonOlder +, pyyaml +, requests +, s3fs +, setuptools +, setuptools-scm +, xxhash +}: + +buildPythonPackage rec { + pname = "pins"; + version = "0.8.4"; + pyproject = true; + + disabled = pythonOlder "3.8"; + + src = fetchFromGitHub { + owner = "rstudio"; + repo = "pins-python"; + rev = "refs/tags/v${version}"; + hash = "sha256-rNIjHwFELHoxDxC/T5vPzHA6Ifjz01rJpTK6kjUxOIM="; + }; + + nativeBuildInputs = [ + setuptools + setuptools-scm + ]; + + propagatedBuildInputs = [ + appdirs + fsspec + humanize + importlib-metadata + importlib-resources + jinja2 + joblib + pandas + pyyaml + requests + xxhash + ]; + + passthru.optional-dependencies = { + aws = [ + s3fs + ]; + azure = [ + adlfs + ]; + gcs = [ + gcsfs + ]; + }; + + nativeCheckInputs = [ + fastparquet + pyarrow + pytest-cases + pytest-parallel + pytestCheckHook + ] ++ lib.flatten (builtins.attrValues passthru.optional-dependencies); + + pythonImportsCheck = [ + "pins" + ]; + + pytestFlagsArray = [ + "pins/tests/" + ]; + + disabledTestPaths = [ + # Tests require network access + "pins/tests/test_boards.py" + "pins/tests/test_compat.py" + "pins/tests/test_constructors.py" + "pins/tests/test_rsconnect_api.py" + ]; + + meta = with lib; { + description = "Module to publishes data, models and other Python objects"; + homepage = "https://github.com/rstudio/pins-python"; + changelog = "https://github.com/rstudio/pins-python/releases/tag/v${version}"; + license = licenses.mit; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/pip-api/default.nix b/pkgs/development/python-modules/pip-api/default.nix index 48edbf2480dc2..c7819229ef16b 100644 --- a/pkgs/development/python-modules/pip-api/default.nix +++ b/pkgs/development/python-modules/pip-api/default.nix @@ -1,25 +1,32 @@ { lib , buildPythonPackage -, fetchPypi +, fetchFromGitHub , pip , pretend , pytestCheckHook , pythonOlder +, setuptools , virtualenv }: buildPythonPackage rec { pname = "pip-api"; - version = "0.0.30"; - format = "setuptools"; + version = "0.0.31"; + pyproject = true; disabled = pythonOlder "3.7"; - src = fetchPypi { - inherit pname version; - hash = "sha256-oF3yx6qbcVc3S89Cc1RCAaDHuuYKnGW8+E85We84lvM="; + src = fetchFromGitHub { + owner = "di"; + repo = "pip-api"; + rev = "refs/tags/${version}"; + hash = "sha256-WFyrEEfrGwsITYzQaukwmz5ml+I6zlMddINTkGeNUTM="; }; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ pip ]; @@ -46,6 +53,7 @@ buildPythonPackage rec { meta = with lib; { description = "Importable pip API"; homepage = "https://github.com/di/pip-api"; + changelog = "https://github.com/di/pip-api/blob/${version}/CHANGELOG"; license = with licenses; [ mit ]; maintainers = with maintainers; [ fab ]; }; diff --git a/pkgs/development/python-modules/pip-tools/default.nix b/pkgs/development/python-modules/pip-tools/default.nix index 1871ce74dd73b..154a9c712c5a9 100644 --- a/pkgs/development/python-modules/pip-tools/default.nix +++ b/pkgs/development/python-modules/pip-tools/default.nix @@ -66,6 +66,8 @@ buildPythonPackage rec { "test_bad_setup_file" # Assertion error "test_compile_recursive_extras" + "test_combine_different_extras_of_the_same_package" + "test_diff_should_not_uninstall" ]; pythonImportsCheck = [ diff --git a/pkgs/development/python-modules/pipdeptree/default.nix b/pkgs/development/python-modules/pipdeptree/default.nix index c1131e6592d23..46374623014fe 100644 --- a/pkgs/development/python-modules/pipdeptree/default.nix +++ b/pkgs/development/python-modules/pipdeptree/default.nix @@ -14,7 +14,7 @@ buildPythonPackage rec { pname = "pipdeptree"; - version = "2.13.1"; + version = "2.13.2"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -23,7 +23,7 @@ buildPythonPackage rec { owner = "tox-dev"; repo = "pipdeptree"; rev = "refs/tags/${version}"; - hash = "sha256-rlnJmGe9LYwIJxV02IjiKtT1iS1O9ik8dAfjsPHsa8U="; + hash = "sha256-eDgulAKq78HRW/7GhO40hxr+F1hOfgXqAzaCw5pFjD8="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/pipenv-poetry-migrate/default.nix b/pkgs/development/python-modules/pipenv-poetry-migrate/default.nix index c40bcae0348e8..f40be0758ba55 100644 --- a/pkgs/development/python-modules/pipenv-poetry-migrate/default.nix +++ b/pkgs/development/python-modules/pipenv-poetry-migrate/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "pipenv-poetry-migrate"; - version = "0.5.2"; + version = "0.5.3"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "yhino"; repo = "pipenv-poetry-migrate"; rev = "refs/tags/v${version}"; - hash = "sha256-bTlDDg3iIab75QynAkXU5u4fgTylPeE6OdiQb8hqP8s="; + hash = "sha256-Figg5yaPo6QqB4lldmyJZtd/Ar584IyETVJfWZ+gjDE="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/pipx/default.nix b/pkgs/development/python-modules/pipx/default.nix index ae575ec0a2635..330abf560fb75 100644 --- a/pkgs/development/python-modules/pipx/default.nix +++ b/pkgs/development/python-modules/pipx/default.nix @@ -10,6 +10,7 @@ , pytestCheckHook , pythonOlder , userpath +, git }: buildPythonPackage rec { @@ -41,6 +42,7 @@ buildPythonPackage rec { nativeCheckInputs = [ pytestCheckHook + git ]; preCheck = '' diff --git a/pkgs/development/python-modules/plaid-python/default.nix b/pkgs/development/python-modules/plaid-python/default.nix index 109b72039b1dc..388688c19f974 100644 --- a/pkgs/development/python-modules/plaid-python/default.nix +++ b/pkgs/development/python-modules/plaid-python/default.nix @@ -9,14 +9,14 @@ buildPythonPackage rec { pname = "plaid-python"; - version = "18.3.0"; + version = "18.4.0"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - hash = "sha256-0u1gj8ZpUL/eehsPNjq7JoDdVDDhlS9SGDw5xizxRlE="; + hash = "sha256-bspTjaTATICk58YHxnq2ZM1N5PNS2o0nVQDWUeUvVAc="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/plugwise/default.nix b/pkgs/development/python-modules/plugwise/default.nix index 5707f88cf69da..636976f3dbf5c 100644 --- a/pkgs/development/python-modules/plugwise/default.nix +++ b/pkgs/development/python-modules/plugwise/default.nix @@ -21,7 +21,7 @@ buildPythonPackage rec { pname = "plugwise"; - version = "0.36.2"; + version = "0.36.3"; pyproject = true; disabled = pythonOlder "3.11"; @@ -30,7 +30,7 @@ buildPythonPackage rec { owner = "plugwise"; repo = "python-plugwise"; rev = "refs/tags/v${version}"; - hash = "sha256-3TTrfvhTQIhig0QUP56+IkciiboXZD4025FvotAZgzo="; + hash = "sha256-LhwrrGle9B2zGhlgPLH+uB6ZiWbNPm1GbPXuUh8RLyo="; }; postPatch = '' diff --git a/pkgs/development/python-modules/plyvel/default.nix b/pkgs/development/python-modules/plyvel/default.nix index d8293f85a9bcf..794585c54b800 100644 --- a/pkgs/development/python-modules/plyvel/default.nix +++ b/pkgs/development/python-modules/plyvel/default.nix @@ -8,12 +8,12 @@ buildPythonPackage rec { pname = "plyvel"; - version = "1.5.0"; + version = "1.5.1"; format = "setuptools"; src = fetchPypi { inherit pname version; - hash = "sha256-zZGOCzFpCrzT0gKodCyvlRqy/hVz3nr3HDhFaEf5ICs="; + hash = "sha256-PK9gCeT8JPv4cS0/XvPaflZJXCakiN8hYSGPw05GAZw="; }; buildInputs = [ pkgs.leveldb ] ++ lib.optional isPy3k pytest; diff --git a/pkgs/development/python-modules/pmdarima/default.nix b/pkgs/development/python-modules/pmdarima/default.nix index f1d152decc1fe..2ddb03b8afe1f 100644 --- a/pkgs/development/python-modules/pmdarima/default.nix +++ b/pkgs/development/python-modules/pmdarima/default.nix @@ -43,7 +43,7 @@ buildPythonPackage rec { # Make sure we're running the tests for the actually installed # package, so that cython's compiled files are available. preCheck = '' - cd $out/lib/${python.libPrefix}/site-packages + cd $out/${python.sitePackages} ''; nativeCheckInputs = [ pytestCheckHook ]; diff --git a/pkgs/development/python-modules/podman/default.nix b/pkgs/development/python-modules/podman/default.nix index 3279c4212ceee..e3174a0a93ac4 100644 --- a/pkgs/development/python-modules/podman/default.nix +++ b/pkgs/development/python-modules/podman/default.nix @@ -15,7 +15,7 @@ buildPythonPackage rec { pname = "podman"; - version = "4.8.2"; + version = "4.9.0"; pyproject = true; disabled = pythonOlder "3.7"; @@ -24,7 +24,7 @@ buildPythonPackage rec { owner = "containers"; repo = "podman-py"; rev = "refs/tags/v${version}"; - hash = "sha256-XJ+KD3HM+Sygq8Oxht80G9DnZadvR3fFyXrJsWny65g="; + hash = "sha256-fLuWOfv4kW5a9h658s8pBgXsBfcYdkXNp9+bWtgKHv8="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/pomegranate/default.nix b/pkgs/development/python-modules/pomegranate/default.nix index 93c42374876c5..0c07483b07114 100644 --- a/pkgs/development/python-modules/pomegranate/default.nix +++ b/pkgs/development/python-modules/pomegranate/default.nix @@ -1,5 +1,4 @@ -{ stdenv -, lib +{ lib , buildPythonPackage , fetchFromGitHub @@ -7,29 +6,25 @@ , setuptools # dependencies -, apricot-select -, networkx , numpy -, scikit-learn +, joblib +, networkx , scipy -, torch - -# tests -, pytestCheckHook +, pyyaml +, cython }: - buildPythonPackage rec { pname = "pomegranate"; - version = "1.0.0"; - format = "pyproject"; + version = "0.14.8"; + pyproject = true; src = fetchFromGitHub { repo = pname; owner = "jmschrei"; # no tags for recent versions: https://github.com/jmschrei/pomegranate/issues/974 rev = "refs/tags/v${version}"; - sha256 = "sha256-EnxKlRRfsOIDLAhYOq7bUSbI/NvPoSyYCZ9D5VCXFGQ="; + hash = "sha256-PoDAtNm/snq4isotkoCTVYUuwr9AKKwiXIojUFMH/YE="; }; nativeBuildInputs = [ @@ -37,20 +32,18 @@ buildPythonPackage rec { ]; propagatedBuildInputs = [ - apricot-select - networkx numpy - scikit-learn + joblib + networkx scipy - torch + pyyaml + cython ]; - nativeCheckInputs = [ - pytestCheckHook - ]; + # https://github.com/etal/cnvkit/issues/815 + passthru.skipBulkUpdate = true; meta = with lib; { - broken = stdenv.isDarwin; description = "Probabilistic and graphical models for Python, implemented in cython for speed"; homepage = "https://github.com/jmschrei/pomegranate"; license = licenses.mit; diff --git a/pkgs/development/python-modules/pontos/default.nix b/pkgs/development/python-modules/pontos/default.nix index 7166577d8c74f..0ea724ed044b5 100644 --- a/pkgs/development/python-modules/pontos/default.nix +++ b/pkgs/development/python-modules/pontos/default.nix @@ -17,7 +17,7 @@ buildPythonPackage rec { pname = "pontos"; - version = "23.12.1"; + version = "24.1.2"; pyproject = true; disabled = pythonOlder "3.9"; @@ -26,7 +26,7 @@ buildPythonPackage rec { owner = "greenbone"; repo = "pontos"; rev = "refs/tags/v${version}"; - hash = "sha256-N10Jn5jq/PktpmeRNlqZyN/rUyAeW+ghY3/RK9Aas7I="; + hash = "sha256-t8mfAi5EG/k5dXsEjC5IpBn/adpSOhqCIkpZ2IMzMkQ="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/posthog/default.nix b/pkgs/development/python-modules/posthog/default.nix index 704a1f7ebf036..82bb7ffd57e48 100644 --- a/pkgs/development/python-modules/posthog/default.nix +++ b/pkgs/development/python-modules/posthog/default.nix @@ -14,7 +14,7 @@ }: let pname = "posthog"; - version = "3.3.1"; + version = "3.3.4"; in buildPythonPackage { inherit pname version; @@ -24,7 +24,7 @@ buildPythonPackage { owner = "PostHog"; repo = "posthog-python"; rev = "refs/tags/v${version}"; - hash = "sha256-aF2Q3ztoFV7j47edtHiLddw+PZyMz6EHj3Zu55rOcF8="; + hash = "sha256-xw6mbcEuW3bt5XmJ7ADE34Pm7MEOqJM08NBde8yqeBg="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pot/default.nix b/pkgs/development/python-modules/pot/default.nix index 663c0427a5ab7..321ad2e2dba78 100644 --- a/pkgs/development/python-modules/pot/default.nix +++ b/pkgs/development/python-modules/pot/default.nix @@ -20,7 +20,7 @@ buildPythonPackage rec { pname = "pot"; - version = "0.9.2"; + version = "0.9.3"; pyproject = true; disabled = pythonOlder "3.6"; @@ -29,7 +29,7 @@ buildPythonPackage rec { owner = "PythonOT"; repo = "POT"; rev = "refs/tags/${version}"; - hash = "sha256-sq8jIWC2DD0T6675W4THbNethm7a//U8HuccKuK0Hjo="; + hash = "sha256-fdqDM0V6zTFe1lcqi53ZZNHAfmuR2I7fdX4SN9qeNn8="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/pox/default.nix b/pkgs/development/python-modules/pox/default.nix index f1f7647defba4..fd2303197b838 100644 --- a/pkgs/development/python-modules/pox/default.nix +++ b/pkgs/development/python-modules/pox/default.nix @@ -6,14 +6,14 @@ buildPythonPackage rec { pname = "pox"; - version = "0.3.3"; + version = "0.3.4"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-4c7WbyoMkqWM82Rrx8y4tHc9QIhLdvhe7aBnBHSHFmc="; + hash = "sha256-FubsqE8b7DgoIQsGsFKt8EzyqyDCL9b77194Mgyab+0="; }; # Test sare failing the sandbox diff --git a/pkgs/development/python-modules/pplpy/default.nix b/pkgs/development/python-modules/pplpy/default.nix index ec9bddb5ec99c..c3a1f8192acf3 100644 --- a/pkgs/development/python-modules/pplpy/default.nix +++ b/pkgs/development/python-modules/pplpy/default.nix @@ -5,7 +5,7 @@ , mpfr , libmpc , ppl -, cython +, cython_3 , cysignals , gmpy2 , sphinx @@ -33,7 +33,7 @@ buildPythonPackage rec { ]; propagatedBuildInputs = [ - cython + cython_3 cysignals gmpy2 ]; diff --git a/pkgs/development/python-modules/preshed/default.nix b/pkgs/development/python-modules/preshed/default.nix index 557045649425f..e0d37c51a2b12 100644 --- a/pkgs/development/python-modules/preshed/default.nix +++ b/pkgs/development/python-modules/preshed/default.nix @@ -11,14 +11,14 @@ buildPythonPackage rec { pname = "preshed"; - version = "4.0.0"; + version = "3.0.9"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-XisLKgfdGo3uqtZhIBmEXGAu4kkH9pNuqvF6q9VuVEw="; + hash = "sha256-chhjxSRP/NJlGtCSiVGix8d7EC9OEaJRrYXTfudiFmA="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/primecountpy/default.nix b/pkgs/development/python-modules/primecountpy/default.nix index 463a0cf50be64..6653a65671b39 100644 --- a/pkgs/development/python-modules/primecountpy/default.nix +++ b/pkgs/development/python-modules/primecountpy/default.nix @@ -2,7 +2,7 @@ , fetchPypi , buildPythonPackage , primecount -, cython +, cython_3 , cysignals }: @@ -18,7 +18,7 @@ buildPythonPackage rec { buildInputs = [ primecount ]; - propagatedBuildInputs = [ cython cysignals ]; + propagatedBuildInputs = [ cython_3 cysignals ]; # depends on pytest-cython for "pytest --doctest-cython" doCheck = false; diff --git a/pkgs/development/python-modules/prophet/default.nix b/pkgs/development/python-modules/prophet/default.nix index 5a8e2dfc1fc6d..07ee3e76021b9 100644 --- a/pkgs/development/python-modules/prophet/default.nix +++ b/pkgs/development/python-modules/prophet/default.nix @@ -66,6 +66,5 @@ buildPythonPackage rec { homepage = "https://facebook.github.io/prophet/"; license = lib.licenses.mit; maintainers = with lib.maintainers; [ tomasajt ]; - platforms = lib.platforms.linux; # cmdstanpy doesn't currently build on darwin }; } diff --git a/pkgs/development/python-modules/psd-tools/default.nix b/pkgs/development/python-modules/psd-tools/default.nix index efc6aa6d742c3..efa364a09de03 100644 --- a/pkgs/development/python-modules/psd-tools/default.nix +++ b/pkgs/development/python-modules/psd-tools/default.nix @@ -2,9 +2,12 @@ , buildPythonPackage , fetchFromGitHub , pythonOlder +, attrs , docopt , pillow , scikit-image +, scipy +, numpy , aggdraw , pytestCheckHook , ipython @@ -31,10 +34,13 @@ buildPythonPackage rec { propagatedBuildInputs = [ aggdraw + attrs docopt ipython + numpy pillow scikit-image + scipy ]; nativeCheckInputs = [ diff --git a/pkgs/development/python-modules/psycopg/default.nix b/pkgs/development/python-modules/psycopg/default.nix index b651412571e6b..ca237ed8bbd54 100644 --- a/pkgs/development/python-modules/psycopg/default.nix +++ b/pkgs/development/python-modules/psycopg/default.nix @@ -2,7 +2,6 @@ , stdenv , buildPythonPackage , fetchFromGitHub -, fetchpatch , fetchurl , pythonOlder , substituteAll @@ -35,13 +34,13 @@ let pname = "psycopg"; - version = "3.1.15"; + version = "3.1.17"; src = fetchFromGitHub { owner = "psycopg"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-8M2Rm9AtOvZwZhKGuR96XiOOmllqcWAZJuEmUXxzsRw="; + hash = "sha256-Paq4Wkvv6d6+fNcvRO/yfj7OWCMygqccKIdfsohHUMM="; }; patches = [ diff --git a/pkgs/development/python-modules/publicsuffixlist/default.nix b/pkgs/development/python-modules/publicsuffixlist/default.nix index 3b94405d04452..c84d90683a478 100644 --- a/pkgs/development/python-modules/publicsuffixlist/default.nix +++ b/pkgs/development/python-modules/publicsuffixlist/default.nix @@ -10,14 +10,14 @@ buildPythonPackage rec { pname = "publicsuffixlist"; - version = "0.10.0.20240108"; + version = "0.10.0.20240203"; pyproject = true; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-LRUwHL70tezJv6R7OJWa9zNQkVdI1Esvkdsqj8O5jSQ="; + hash = "sha256-+AbNJqI31yZsvBtFyIuCjVsUWH/gtvOg+L05NroYCW0="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/pudb/default.nix b/pkgs/development/python-modules/pudb/default.nix index 347d11341e149..160e74d5c7b66 100644 --- a/pkgs/development/python-modules/pudb/default.nix +++ b/pkgs/development/python-modules/pudb/default.nix @@ -12,14 +12,14 @@ buildPythonPackage rec { pname = "pudb"; - version = "2023.1"; + version = "2024.1"; format = "setuptools"; disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; - hash = "sha256-Fd88YDq6h6kYpmbvjhv2P3ZCOMw1ids8W3pfGwHqLwM="; + hash = "sha256-/J1ql2pZtZB2TIN57CAP7NR/qoQlm2Tv2M2GBmoK8zg="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pulp/default.nix b/pkgs/development/python-modules/pulp/default.nix index 6ecd6d4ba8c0d..ab55157ed2074 100644 --- a/pkgs/development/python-modules/pulp/default.nix +++ b/pkgs/development/python-modules/pulp/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "pulp"; - version = "2.7.0"; + version = "2.8.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -19,7 +19,7 @@ buildPythonPackage rec { owner = "coin-or"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-j0f6OiscJyTqPNyLp0qWRjCGLWuT3HdU1S/sxpnsiMo="; + hash = "sha256-lpbk1GeC8F/iLGV8G5RPHghnaM9eL82YekUYEt9+mvc="; }; postPatch = '' diff --git a/pkgs/development/python-modules/pure-protobuf/default.nix b/pkgs/development/python-modules/pure-protobuf/default.nix index ba8b1836ba624..29cdf21cf3dcb 100644 --- a/pkgs/development/python-modules/pure-protobuf/default.nix +++ b/pkgs/development/python-modules/pure-protobuf/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "pure-protobuf"; - version = "3.0.0"; + version = "2.3.0"; # Komikku not launching w/ 3.0.0, #280551 format = "pyproject"; disabled = pythonOlder "3.7"; @@ -21,7 +21,7 @@ buildPythonPackage rec { owner = "eigenein"; repo = "protobuf"; rev = "refs/tags/${version}"; - hash = "sha256-MjxJTX672LSEqZkH39vTD/+IhCTp6FL2z15S7Lxj6Dc="; + hash = "sha256-nJ3F8dUrqMeWqTV9ErGqrMvofJwBKwNUDfxWIqFh4nY="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/pwlf/default.nix b/pkgs/development/python-modules/pwlf/default.nix new file mode 100644 index 0000000000000..8259a41e2e40a --- /dev/null +++ b/pkgs/development/python-modules/pwlf/default.nix @@ -0,0 +1,48 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, setuptools +, wheel +, scipy +, numpy +, pydoe +, unittestCheckHook +}: + +buildPythonPackage rec { + pname = "pwlf"; + version = "2.2.1"; + pyproject = true; + + src = fetchFromGitHub { + owner = "cjekel"; + repo = "piecewise_linear_fit_py"; + rev = "v${version}"; + hash = "sha256-gjdahulpHjBmOlKOCPF9WmrWe4jn/+0oVI4o09EX7qE="; + }; + + nativeBuildInputs = [ + setuptools + wheel + ]; + + propagatedBuildInputs = [ + scipy + numpy + pydoe + ]; + + nativeCheckInputs = [ + unittestCheckHook + ]; + + pythonImportsCheck = [ "pwlf" ]; + + meta = with lib; { + description = "Fit piecewise linear data for a specified number of line segments"; + homepage = "https://jekel.me/piecewise_linear_fit_py/"; + changelog = "https://github.com/cjekel/piecewise_linear_fit_py/blob/${src.rev}/CHANGELOG.md"; + license = licenses.mit; + maintainers = with maintainers; [ doronbehar ]; + }; +} diff --git a/pkgs/development/python-modules/py-serializable/default.nix b/pkgs/development/python-modules/py-serializable/default.nix index 3f342a1469ca6..12bdef693e201 100644 --- a/pkgs/development/python-modules/py-serializable/default.nix +++ b/pkgs/development/python-modules/py-serializable/default.nix @@ -11,16 +11,16 @@ buildPythonPackage rec { pname = "py-serializable"; - version = "0.17.1"; + version = "1.0.0"; pyproject = true; - disabled = pythonOlder "3.7"; + disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "madpah"; repo = "serializable"; rev = "refs/tags/v${version}"; - hash = "sha256-G7bIsvWdL4qVg4akJ2KtXVS10DiJSFUYEzyQSp9ry9o="; + hash = "sha256-7WYe3X4wVUC7HyYoCVQYWm61C+J3r91Ci8IHNeWBTVE="; }; nativeBuildInputs = [ @@ -50,7 +50,7 @@ buildPythonPackage rec { meta = with lib; { description = "Pythonic library to aid with serialisation and deserialisation to/from JSON and XML"; homepage = "https://github.com/madpah/serializable"; - changelog = "https://github.com/madpah/serializable/blob/${version}/CHANGELOG.md"; + changelog = "https://github.com/madpah/serializable/blob/v${version}/CHANGELOG.md"; license = licenses.asl20; maintainers = with maintainers; [ fab ]; }; diff --git a/pkgs/development/python-modules/py-sonic/default.nix b/pkgs/development/python-modules/py-sonic/default.nix index ec0da2c3ab3bf..826c23120ed99 100644 --- a/pkgs/development/python-modules/py-sonic/default.nix +++ b/pkgs/development/python-modules/py-sonic/default.nix @@ -2,13 +2,13 @@ buildPythonPackage rec { pname = "py-sonic"; - version = "1.0.0"; + version = "1.0.1"; format = "setuptools"; disabled = isPy27; src = fetchPypi { inherit pname version; - hash = "sha256-9ho0F5kf74pCsLujwLt+pU+Ikxu70/kk+WP7lnD7CiE="; + hash = "sha256-DU1T86T0jQ6ptkWdjuV70VC8MFx/rK5aQFYjbK6F2Hk="; }; # package has no tests diff --git a/pkgs/development/python-modules/py3status/default.nix b/pkgs/development/python-modules/py3status/default.nix index 45ac825c6a561..00552787cc50f 100644 --- a/pkgs/development/python-modules/py3status/default.nix +++ b/pkgs/development/python-modules/py3status/default.nix @@ -24,12 +24,12 @@ buildPythonPackage rec { pname = "py3status"; - version = "3.54"; + version = "3.55"; pyproject = true; src = fetchPypi { inherit pname version; - hash = "sha256-xRiXFCILZeiNYJMIJ8Qxga71/7WXeTUsdnRvfvDzpCY="; + hash = "sha256-HGOHJQWEvTTL+GXVb8ZS8DlL9dHWuS0PioP1bZ32PhI="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/pyTelegramBotAPI/default.nix b/pkgs/development/python-modules/pyTelegramBotAPI/default.nix index 39baa283996a7..7e9e2c47d3b5a 100644 --- a/pkgs/development/python-modules/pyTelegramBotAPI/default.nix +++ b/pkgs/development/python-modules/pyTelegramBotAPI/default.nix @@ -18,7 +18,7 @@ buildPythonPackage rec { pname = "pytelegrambotapi"; - version = "4.14.1"; + version = "4.15.2"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -27,7 +27,7 @@ buildPythonPackage rec { owner = "eternnoir"; repo = "pyTelegramBotAPI"; rev = "refs/tags/${version}"; - hash = "sha256-p31JRojOwoWQZE1w6UXEja0UvloMDbtKw75HHMUzgFU="; + hash = "sha256-Xw+edPs2CKJdpgDp+JB3L2W4oAIAk/IpQAD7c2kF3gk="; }; passthru.optional-dependencies = { diff --git a/pkgs/development/python-modules/pyarrow-hotfix/default.nix b/pkgs/development/python-modules/pyarrow-hotfix/default.nix new file mode 100644 index 0000000000000..38a8dc4b6ea85 --- /dev/null +++ b/pkgs/development/python-modules/pyarrow-hotfix/default.nix @@ -0,0 +1,37 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, hatchling +, pythonOlder +}: + +buildPythonPackage rec { + pname = "pyarrow-hotfix"; + version = "0.6"; + pyproject = true; + + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "pitrou"; + repo = "pyarrow-hotfix"; + rev = "refs/tags/v${version}"; + hash = "sha256-LlSbxIxvouzvlP6PB8J8fJaxWoRbxz4wTs7Gb5LbM4A="; + }; + + nativeBuildInputs = [ + hatchling + ]; + + pythonImportsCheck = [ + "pyarrow_hotfix" + ]; + + meta = with lib; { + description = "Hotfix for the PyArrow security vulnerability CVE-2023-47248"; + homepage = "https://github.com/pitrou/pyarrow-hotfix"; + changelog = "https://github.com/pitrou/pyarrow-hotfix/releases/tag/v${version}"; + license = licenses.asl20; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/pyasyncore/default.nix b/pkgs/development/python-modules/pyasyncore/default.nix new file mode 100644 index 0000000000000..d5ebd86a7d952 --- /dev/null +++ b/pkgs/development/python-modules/pyasyncore/default.nix @@ -0,0 +1,35 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, setuptools +}: + +buildPythonPackage rec { + pname = "pyasyncore"; + version = "1.0.3"; + pyproject = true; + + src = fetchFromGitHub { + owner = "simonrob"; + repo = "pyasyncore"; + rev = "refs/tags/v${version}"; + hash = "sha256-e1iHC9mbQYlfpIdLk033wvoA5z5WcHjOZm6oFTfpRTA="; + }; + + nativeBuildInputs = [ + setuptools + ]; + + pythonImportsCheck = [ + "asyncore" + ]; + + doCheck = false; # no tests + + meta = with lib; { + description = "Make asyncore available for Python 3.12 onwards"; + homepage = "https://github.com/simonrob/pyasyncore"; + license = licenses.psfl; + maintainers = with maintainers; [ ]; + }; +} diff --git a/pkgs/development/python-modules/pyatag/default.nix b/pkgs/development/python-modules/pyatag/default.nix index 1920466295e68..7e7a3ba593d35 100644 --- a/pkgs/development/python-modules/pyatag/default.nix +++ b/pkgs/development/python-modules/pyatag/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "pyatag"; - version = "3.5.1"; + version = "0.3.7.1"; pyproject = true; disabled = pythonOlder "3.7"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "MatsNl"; repo = "pyatag"; rev = "refs/tags/${version}"; - hash = "sha256-hyGos0LFVKv63jf1ODPFfk+R47oyHea+8MGvxeKpop8="; + hash = "sha256-3h9mpopTbEULCx7rcEt/I/ZnUA0L/fJ7Y3L5h/6EuC4="; }; nativeBuildInputs = [ @@ -36,6 +36,9 @@ buildPythonPackage rec { "pyatag.discovery" ]; + # it would use the erroneous tag 3.5.1 + passthru.skipBulkUpdate = true; + meta = with lib; { description = "Python module to talk to Atag One"; homepage = "https://github.com/MatsNl/pyatag"; diff --git a/pkgs/development/python-modules/pyatem/default.nix b/pkgs/development/python-modules/pyatem/default.nix index 5b7749ea57c99..1792d2699d802 100644 --- a/pkgs/development/python-modules/pyatem/default.nix +++ b/pkgs/development/python-modules/pyatem/default.nix @@ -18,14 +18,14 @@ buildPythonPackage rec { pname = "pyatem"; - version = "0.9.0"; # check latest version in setup.py + version = "0.10.0"; # check latest version in setup.py pyproject = true; src = fetchFromSourcehut { owner = "~martijnbraam"; repo = "pyatem"; rev = version; - hash = "sha256-ntwUhgC8Cgrim+kU3B3ckgPDmPe+aEHDP4wsB45KbJg="; + hash = "sha256-O+f1vVwfGJjLem25hsYE1Q1V4vzjrc0HxTBUCANCEwE="; }; nativeBuildInputs = [ @@ -49,15 +49,6 @@ buildPythonPackage rec { pushd $TESTDIR ''; - disabledTests = lib.optionals (stdenv.isLinux && stdenv.isAarch64) [ - # colorspace mapping has weird, but constant offsets on aarch64-linux - "test_blueramp" - "test_greenramp" - "test_hues" - "test_primaries" - "test_redramp" - ]; - postCheck = '' popd ''; diff --git a/pkgs/development/python-modules/pyatmo/default.nix b/pkgs/development/python-modules/pyatmo/default.nix index eabe5a872f4f5..cef80bbb1b343 100644 --- a/pkgs/development/python-modules/pyatmo/default.nix +++ b/pkgs/development/python-modules/pyatmo/default.nix @@ -16,7 +16,7 @@ buildPythonPackage rec { pname = "pyatmo"; - version = "8.0.2"; + version = "8.0.3"; pyproject = true; disabled = pythonOlder "3.10"; @@ -25,7 +25,7 @@ buildPythonPackage rec { owner = "jabesq"; repo = "pyatmo"; rev = "refs/tags/v${version}"; - hash = "sha256-AKpDXfNF2t/3F4SmMWIgfkxHgcJobYs225gIeJ31l6k="; + hash = "sha256-FnDXj+bY/TMdengnxgludXUTiZw9wpeFiNbWTIxrlzw="; }; postPatch = '' diff --git a/pkgs/development/python-modules/pyatspi/default.nix b/pkgs/development/python-modules/pyatspi/default.nix index fb7fedeaefc59..0fbd5b97f680d 100644 --- a/pkgs/development/python-modules/pyatspi/default.nix +++ b/pkgs/development/python-modules/pyatspi/default.nix @@ -2,12 +2,12 @@ buildPythonPackage rec { pname = "pyatspi"; - version = "2.46.0"; + version = "2.46.1"; format = "other"; src = fetchurl { url = "mirror://gnome/sources/${pname}/${lib.versions.majorMinor version}/${pname}-${version}.tar.xz"; - sha256 = "1FSJzz1HqhULGjXolJs7MQNfjCB15YjSa278Yllwxi4="; + sha256 = "+R9qV0NOnAfRPVxL+BndeOjuYFqsKuRdjGTCgRT7BBs="; }; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/development/python-modules/pyaudio/default.nix b/pkgs/development/python-modules/pyaudio/default.nix index 048acc08e43db..2cab06e7c7862 100644 --- a/pkgs/development/python-modules/pyaudio/default.nix +++ b/pkgs/development/python-modules/pyaudio/default.nix @@ -7,12 +7,12 @@ buildPythonPackage rec { pname = "PyAudio"; - version = "0.2.13"; + version = "0.2.14"; disabled = isPyPy; src = fetchPypi { inherit pname version; - hash = "sha256-JrzMgeQkPRwP9Uh+a0gd5jKfzWXHk2XCZ87zjzY6K1Y="; + hash = "sha256-eN//OHm0mU0fT8ZIVkald1XG7jwZZHpJH3kKCJW9L4c="; }; buildInputs = [ pkgs.portaudio ]; diff --git a/pkgs/development/python-modules/pybase64/default.nix b/pkgs/development/python-modules/pybase64/default.nix index d94cdf524d205..944247e1fac9b 100644 --- a/pkgs/development/python-modules/pybase64/default.nix +++ b/pkgs/development/python-modules/pybase64/default.nix @@ -7,14 +7,14 @@ buildPythonPackage rec { pname = "pybase64"; - version = "1.3.1"; + version = "1.3.2"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - hash = "sha256-I0CC/dcDnLdQxkTi03/Ck+c0XqOl8nmrrC9PyWLZuZY="; + hash = "sha256-Mu+ZPFWCHayavXZ+5GVqUBOy7YvxElyruufoTSuZEDg="; }; nativeCheckInputs = [ diff --git a/pkgs/development/python-modules/pybids/default.nix b/pkgs/development/python-modules/pybids/default.nix index 9519ca65e2469..f6f5a8fc18ed7 100644 --- a/pkgs/development/python-modules/pybids/default.nix +++ b/pkgs/development/python-modules/pybids/default.nix @@ -26,14 +26,17 @@ buildPythonPackage rec { hash = "sha256-pahl8wi6Sf8AuVqkvi7H90ViHr+9utb14ZVmKK3rFm4="; }; + pythonRelaxDeps = [ + "formulaic" + "sqlalchemy" + ]; + nativeBuildInputs = [ pythonRelaxDepsHook setuptools versioneer ] ++ versioneer.optional-dependencies.toml; - pythonRelaxDeps = [ "sqlalchemy" ]; - propagatedBuildInputs = [ bids-validator click @@ -65,6 +68,7 @@ buildPythonPackage rec { meta = with lib; { description = "Python tools for querying and manipulating BIDS datasets"; homepage = "https://github.com/bids-standard/pybids"; + changelog = "https://github.com/bids-standard/pybids/blob/${version}/CHANGELOG.rst"; license = licenses.mit; maintainers = with maintainers; [ jonringer ]; }; diff --git a/pkgs/development/python-modules/pycaption/default.nix b/pkgs/development/python-modules/pycaption/default.nix index db90dcce9492e..ea873940e4162 100644 --- a/pkgs/development/python-modules/pycaption/default.nix +++ b/pkgs/development/python-modules/pycaption/default.nix @@ -1,7 +1,8 @@ { lib , buildPythonPackage , pythonOlder -, fetchPypi +, fetchFromGitHub +, setuptools , beautifulsoup4 , lxml , cssutils @@ -12,17 +13,23 @@ buildPythonPackage rec { pname = "pycaption"; - version = "2.2.0"; + version = "2.2.3"; - disabled = pythonOlder "3.6"; + disabled = pythonOlder "3.8"; - format = "setuptools"; + pyproject = true; - src = fetchPypi { - inherit pname version; - hash = "sha256-W/sD/Nh2k1z7YvFVnQB9dGa1bXoCTb4QrPk/1mi4Hdk="; + src = fetchFromGitHub { + owner = "pbs"; + repo = "pycaption"; + rev = "refs/tags/${version}"; + hash = "sha256-uPzeMuYoNgluXnwSMQE5lSkduBzwi8mP8K5cAKdTZUw="; }; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ beautifulsoup4 lxml @@ -38,8 +45,6 @@ buildPythonPackage rec { pytestCheckHook ]; - doCheck = false; - meta = with lib; { changelog = "https://github.com/pbs/pycaption/blob/${version}/docs/changelog.rst"; description = "Closed caption converter"; diff --git a/pkgs/development/python-modules/pychromecast/default.nix b/pkgs/development/python-modules/pychromecast/default.nix index 32ca267d44490..2abbe4a4e7701 100644 --- a/pkgs/development/python-modules/pychromecast/default.nix +++ b/pkgs/development/python-modules/pychromecast/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "pychromecast"; - version = "13.0.8"; + version = "13.1.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -18,7 +18,7 @@ buildPythonPackage rec { src = fetchPypi { pname = "PyChromecast"; inherit version; - hash = "sha256-5LdSPbE3+N4F7tzGFUETtoUyhIYpRCtEjCM0+slmpEc="; + hash = "sha256-COYai1S9IRnTyasewBNtPYVjqpfgo7V4QViLm+YMJnY="; }; postPatch = '' diff --git a/pkgs/development/python-modules/pycryptodome/default.nix b/pkgs/development/python-modules/pycryptodome/default.nix index 4b37a0765f0e4..444d673100bbb 100644 --- a/pkgs/development/python-modules/pycryptodome/default.nix +++ b/pkgs/development/python-modules/pycryptodome/default.nix @@ -10,14 +10,14 @@ let in buildPythonPackage rec { pname = "pycryptodome"; - version = "3.19.0"; + version = "3.19.1"; format = "setuptools"; src = fetchFromGitHub { owner = "Legrandin"; repo = "pycryptodome"; rev = "refs/tags/v${version}"; - hash = "sha256-WD+OEjePVtqlmn7h1CIfraLuEQlodkvjmYQ8q7nNoGU="; + hash = "sha256-+m0gF47l3c9gZ9dLdOUNW0I2W1O+OGrmsdysu7QdjvI="; }; postPatch = '' diff --git a/pkgs/development/python-modules/pyctr/default.nix b/pkgs/development/python-modules/pyctr/default.nix index 7f1a8d6d01b17..ddb9937df3567 100644 --- a/pkgs/development/python-modules/pyctr/default.nix +++ b/pkgs/development/python-modules/pyctr/default.nix @@ -7,14 +7,14 @@ buildPythonPackage rec { pname = "pyctr"; - version = "0.7.1"; + version = "0.7.3"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-SnCps5nzrl+dkbloRbjhaOGDzKOsi8OHX2JXgoJ/XG0="; + hash = "sha256-lpW2pcT5oG7tBUXRj7cTD9hCx51hVhVODq9RxP9GKIg="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pycuda/default.nix b/pkgs/development/python-modules/pycuda/default.nix index 4f4c9291ae394..129bd6269cd45 100644 --- a/pkgs/development/python-modules/pycuda/default.nix +++ b/pkgs/development/python-modules/pycuda/default.nix @@ -24,12 +24,12 @@ let in buildPythonPackage rec { pname = "pycuda"; - version = "2023.1"; + version = "2024.1"; format = "setuptools"; src = fetchPypi { inherit pname version; - hash = "sha256-F1/2dfDPEOOOmtwD7V3z7Y2Kv32lE0yNzOx1LooKPpE="; + hash = "sha256-1Q0j/2NxSCz/fUuVPvQKuByd8DjsthRIT5/VNHMnMn4="; }; preConfigure = with lib.versions; '' diff --git a/pkgs/development/python-modules/pycurl/default.nix b/pkgs/development/python-modules/pycurl/default.nix index 29c4a2034b2f7..80a9458e32c63 100644 --- a/pkgs/development/python-modules/pycurl/default.nix +++ b/pkgs/development/python-modules/pycurl/default.nix @@ -70,6 +70,7 @@ buildPythonPackage rec { # https://github.com/pycurl/pycurl/issues/819 "test_multi_socket_select" # https://github.com/pycurl/pycurl/issues/729 + "test_easy_pause_unpause" "test_multi_socket_action" # https://github.com/pycurl/pycurl/issues/822 "test_request_with_verifypeer" diff --git a/pkgs/development/python-modules/pydash/default.nix b/pkgs/development/python-modules/pydash/default.nix index 14e7ffdfcd6ef..05ae5e165c27f 100644 --- a/pkgs/development/python-modules/pydash/default.nix +++ b/pkgs/development/python-modules/pydash/default.nix @@ -1,47 +1,63 @@ -{ stdenv -, lib +{ lib +, stdenv , buildPythonPackage , fetchFromGitHub , invoke , mock , pytestCheckHook , pythonOlder +, setuptools , sphinx-rtd-theme +, typing-extensions }: buildPythonPackage rec { pname = "pydash"; - version = "5.1.1"; - format = "pyproject"; + version = "7.0.6"; + pyproject = true; - disabled = pythonOlder "3.6"; + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "dgilland"; - repo = pname; - rev = "v${version}"; - hash = "sha256-VbuRzKwPMh5S4GZQYnh0sZOBi4LNFjMuol95tMC43b0="; + repo = "pydash"; + rev = "refs/tags/v${version}"; + hash = "sha256-zwtUdP2fFFE5X0SDkBDetAQbKnZ1v24DGdzN3fQLa0A="; }; + postPatch = '' + sed -i "/--cov/d" setup.cfg + sed -i "/--no-cov/d" setup.cfg + ''; + + nativeBuildInputs = [ + setuptools + ]; + + propagatedBuildInputs = [ + typing-extensions + ]; + nativeCheckInputs = [ invoke mock - sphinx-rtd-theme pytestCheckHook + sphinx-rtd-theme ]; - postPatch = '' - sed -i "/--cov/d" setup.cfg - sed -i "/--no-cov/d" setup.cfg - ''; - pythonImportsCheck = [ "pydash" ]; + disabledTestPaths = [ + # Disable mypy testing + "tests/pytest_mypy_testing/" + ]; + meta = with lib; { description = "Python utility libraries for doing stuff in a functional way"; homepage = "https://pydash.readthedocs.io"; + changelog = "https://github.com/dgilland/pydash/blob/v${version}/CHANGELOG.rst"; license = licenses.mit; maintainers = with maintainers; [ ma27 ]; }; diff --git a/pkgs/development/python-modules/pydata-sphinx-theme/default.nix b/pkgs/development/python-modules/pydata-sphinx-theme/default.nix index f3f74623a4c54..337a7a4fca679 100644 --- a/pkgs/development/python-modules/pydata-sphinx-theme/default.nix +++ b/pkgs/development/python-modules/pydata-sphinx-theme/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "pydata-sphinx-theme"; - version = "0.15.1"; + version = "0.15.2"; format = "wheel"; @@ -23,7 +23,7 @@ buildPythonPackage rec { dist = "py3"; python = "py3"; pname = "pydata_sphinx_theme"; - hash = "sha256-Bk776WE3vQrKuAQTdZ8ds4pCtR4kKbFZr3XEOnWQMgs="; + hash = "sha256-DF+h+pipsm2uWQZm/1dvJ+Jse6cI/udU7Lngc1ntRYg="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pydeps/default.nix b/pkgs/development/python-modules/pydeps/default.nix index f84123163ccf4..560a623485419 100644 --- a/pkgs/development/python-modules/pydeps/default.nix +++ b/pkgs/development/python-modules/pydeps/default.nix @@ -6,23 +6,28 @@ , pytestCheckHook , pythonOlder , pyyaml +, setuptools , toml }: buildPythonPackage rec { pname = "pydeps"; - version = "1.12.17"; - format = "setuptools"; + version = "1.12.18"; + pyproject = true; disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "thebjorn"; - repo = pname; + repo = "pydeps"; rev = "refs/tags/v${version}"; - hash = "sha256-DVSZeNuDz/y0jh/HimV+jFgNFevMhUKOu6EhZytMMqQ="; + hash = "sha256-89RrAf09n42mRiWOUdHFNP4JoCP9bXMofkISyVqd+4I="; }; + nativeBuildInputs = [ + setuptools + ]; + buildInputs = [ graphviz ]; diff --git a/pkgs/development/python-modules/pydicom/default.nix b/pkgs/development/python-modules/pydicom/default.nix index ddb4482ef3e7d..48824469b2304 100644 --- a/pkgs/development/python-modules/pydicom/default.nix +++ b/pkgs/development/python-modules/pydicom/default.nix @@ -2,22 +2,23 @@ , stdenv , buildPythonPackage , fetchFromGitHub -, pythonOlder -, pytestCheckHook +, flit-core , numpy , pillow +, pytestCheckHook +, pythonOlder , setuptools }: let pname = "pydicom"; - version = "2.4.3"; + version = "2.4.4"; src = fetchFromGitHub { owner = "pydicom"; repo = "pydicom"; rev = "refs/tags/v${version}"; - hash = "sha256-PF4iA/FPxPYD8OfgWqKRndwi2vURuzh6tlEwduxs/3E="; + hash = "sha256-iJE1horEmdL7bKPn+NlZLgmtCbLZCZWQ8NjDBQPzXk8="; }; # Pydicom needs pydicom-data to run some tests. If these files aren't downloaded @@ -32,15 +33,19 @@ let in buildPythonPackage { inherit pname version src; - disabled = pythonOlder "3.6"; + pyproject = true; - format = "setuptools"; + disabled = pythonOlder "3.10"; patches = [ # backport of https://github.com/pydicom/pydicom/commit/2513a20cc41743a42bdb86f4cbb4873899b7823c ./pillow-10.1.0-compat.patch ]; + nativeBuildInputs = [ + flit-core + ]; + propagatedBuildInputs = [ numpy pillow @@ -78,6 +83,7 @@ buildPythonPackage { meta = with lib; { description = "Python package for working with DICOM files"; homepage = "https://pydicom.github.io"; + changelog = "https://github.com/pydicom/pydicom/releases/tag/v${version}"; license = licenses.mit; maintainers = with maintainers; [ bcdarwin ]; }; diff --git a/pkgs/development/python-modules/pydoe/default.nix b/pkgs/development/python-modules/pydoe/default.nix new file mode 100644 index 0000000000000..e361d09ced3b7 --- /dev/null +++ b/pkgs/development/python-modules/pydoe/default.nix @@ -0,0 +1,38 @@ +{ lib +, buildPythonPackage +, fetchPypi +, setuptools +, wheel +, scipy +, numpy +}: + +buildPythonPackage rec { + pname = "pyDOE"; + version = "0.3.8"; + pyproject = true; + + src = fetchPypi { + inherit pname version; + hash = "sha256-y9bxSuJtPJ9zYBMgX1PqEZGt1FZwM8Pud7fdNWVmxLY="; + extension = "zip"; + }; + + nativeBuildInputs = [ + setuptools + wheel + ]; + propagatedBuildInputs = [ + scipy + numpy + ]; + + pythonImportsCheck = [ "pyDOE" ]; + + meta = with lib; { + description = "Design of experiments for Python"; + homepage = "https://github.com/tisimst/pyDOE"; + license = licenses.bsd3; + maintainers = with maintainers; [ doronbehar ]; + }; +} diff --git a/pkgs/development/python-modules/pydrive2/default.nix b/pkgs/development/python-modules/pydrive2/default.nix index ad2d80c0a5e89..32bb5d78984f3 100644 --- a/pkgs/development/python-modules/pydrive2/default.nix +++ b/pkgs/development/python-modules/pydrive2/default.nix @@ -1,19 +1,25 @@ { lib +, appdirs , buildPythonPackage , fetchPypi +, fsspec +, funcy , google-api-python-client , oauth2client , pyopenssl -, pyyaml , pythonOlder +, pyyaml +, setuptools +, setuptools-scm +, tqdm }: buildPythonPackage rec { pname = "pydrive2"; version = "1.19.0"; - format = "setuptools"; + pyproject = true; - disabled = pythonOlder "3.7"; + disabled = pythonOlder "3.8"; src = fetchPypi { pname = "PyDrive2"; @@ -21,6 +27,11 @@ buildPythonPackage rec { hash = "sha256-Ia6n2idjXCw/cFDgICBhkfOwMFxlUDFebo491Sb4tTE="; }; + nativeBuildInputs = [ + setuptools + setuptools-scm + ]; + propagatedBuildInputs = [ google-api-python-client oauth2client @@ -28,6 +39,16 @@ buildPythonPackage rec { pyyaml ]; + passthru.optional-dependencies = { + fsspec = [ + appdirs + fsspec + funcy + tqdm + ]; + }; + + # Tests require a account and network access doCheck = false; pythonImportsCheck = [ diff --git a/pkgs/development/python-modules/pyduotecno/default.nix b/pkgs/development/python-modules/pyduotecno/default.nix index 48f7aa8601e59..d3fbc87e25d85 100644 --- a/pkgs/development/python-modules/pyduotecno/default.nix +++ b/pkgs/development/python-modules/pyduotecno/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "pyduotecno"; - version = "2024.1.1"; + version = "2024.1.2"; format = "pyproject"; disabled = pythonOlder "3.9"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "Cereal2nd"; repo = "pyDuotecno"; rev = "refs/tags/${version}"; - hash = "sha256-+mPbx678QIV567umbmVKqBTq696pFlFXhlb4cMv54ak="; + hash = "sha256-lwtCTzZJn3bamZWbJoeiyxnzrIRZAi9JPjVgiVR0LG8="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/pyemvue/default.nix b/pkgs/development/python-modules/pyemvue/default.nix new file mode 100644 index 0000000000000..d8502aaf43338 --- /dev/null +++ b/pkgs/development/python-modules/pyemvue/default.nix @@ -0,0 +1,48 @@ +{ lib +, buildPythonPackage +, fetchPypi + +# build-system +, hatchling + +# propagated modules +, requests +, python-dateutil +, pycognito +, typing-extensions +}: + +buildPythonPackage rec { + pname = "pyemvue"; + version = "0.18.0"; + pyproject = true; + + src = fetchPypi { + inherit pname version; + hash = "sha256-s1Uuoiog3OkqOb6PSTqh79vgyLDGFIuZMCyQKH+qG3g="; + }; + + nativeBuildInputs = [ + hatchling + ]; + + propagatedBuildInputs = [ + requests + python-dateutil + pycognito + typing-extensions + ]; + + pythonImportsCheck = [ "pyemvue" ]; + + # has no tests + doCheck = false; + + meta = with lib; { + changelog = "https://github.com/magico13/PyEmVue/releases/tag/v${version}"; + description = "A Python library for reading data from the Emporia Vue energy monitoring system"; + homepage = "https://github.com/magico13/PyEmVue"; + license = licenses.mit; + maintainers = with maintainers; [ presto8 ]; + }; +} diff --git a/pkgs/development/python-modules/pyenphase/default.nix b/pkgs/development/python-modules/pyenphase/default.nix index 05fccad3a89db..4826806c19f12 100644 --- a/pkgs/development/python-modules/pyenphase/default.nix +++ b/pkgs/development/python-modules/pyenphase/default.nix @@ -18,7 +18,7 @@ buildPythonPackage rec { pname = "pyenphase"; - version = "1.17.0"; + version = "1.19.0"; pyproject = true; disabled = pythonOlder "3.11"; @@ -27,7 +27,7 @@ buildPythonPackage rec { owner = "pyenphase"; repo = "pyenphase"; rev = "refs/tags/v${version}"; - hash = "sha256-GNyhUk2/CSSdigrAJ0T2F1+49PkyPxMaec3nO9/cmNo="; + hash = "sha256-Wj2CkOvH5mS+DaIcbrqHjK+0mG3gfyF5M9tFImeJ/ko="; }; postPatch = '' diff --git a/pkgs/development/python-modules/pyfaidx/default.nix b/pkgs/development/python-modules/pyfaidx/default.nix index d16b02d1c3a41..ed7997a842ae6 100644 --- a/pkgs/development/python-modules/pyfaidx/default.nix +++ b/pkgs/development/python-modules/pyfaidx/default.nix @@ -13,12 +13,12 @@ buildPythonPackage rec { pname = "pyfaidx"; - version = "0.7.2.2"; + version = "0.8.1.1"; format = "pyproject"; src = fetchPypi { inherit pname version; - hash = "sha256-O3aTwFLIJpEAD+SpJHXbgv/DtachoSsQ37yHEZxLTTA="; + hash = "sha256-bwSCNSYZ8sxWADyiIyG9sNB2S2VnlbweQGKx+psIaGs="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/pyfireservicerota/default.nix b/pkgs/development/python-modules/pyfireservicerota/default.nix index 7622f858959ba..fcdfdd0442d48 100644 --- a/pkgs/development/python-modules/pyfireservicerota/default.nix +++ b/pkgs/development/python-modules/pyfireservicerota/default.nix @@ -1,6 +1,9 @@ { lib , buildPythonPackage +, pythonOlder , fetchPypi +, fetchpatch2 +, pdm-backend , pytz , oauthlib , requests @@ -9,14 +12,27 @@ buildPythonPackage rec { pname = "pyfireservicerota"; - version = "0.0.43"; - format = "setuptools"; + version = "0.0.44"; + pyproject = true; + + disabled = pythonOlder "3.10"; src = fetchPypi { inherit pname version; - hash = "sha256-3+QK1BVuWYii0oYT4xXMOYJZmVKrB4EmqE0EkdFlZvE="; + hash = "sha256-OknGX4xP+AHXRuhizbeTVAfiOX0uRGzAly7FJ1vopDI="; }; + postPatch = '' + # https://github.com/cyberjunky/python-fireservicerota/pull/1 + substituteInPlace pyproject.toml \ + --replace-fail '"aiohttp",' '"requests",' \ + --replace-fail '"aiohttp_retry",' "" + ''; + + nativeBuildInputs = [ + pdm-backend + ]; + propagatedBuildInputs = [ pytz oauthlib diff --git a/pkgs/development/python-modules/pyformlang/default.nix b/pkgs/development/python-modules/pyformlang/default.nix index d4a055d459cd2..63bf98a0ea5fb 100644 --- a/pkgs/development/python-modules/pyformlang/default.nix +++ b/pkgs/development/python-modules/pyformlang/default.nix @@ -11,12 +11,12 @@ buildPythonPackage rec { pname = "pyformlang"; - version = "1.0.4"; + version = "1.0.6"; pyproject = true; src = fetchPypi { inherit pname version; - hash = "sha256-ysX6c8q26bcQyq6GgKBKxTdp00j+4ypb3mgM2cqCmBs="; + hash = "sha256-LHQM+Vy8YVfTtpWaveYgBlp74AnS/IF3Y1EbgwVku7I="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/pyfritzhome/default.nix b/pkgs/development/python-modules/pyfritzhome/default.nix index 5a158aa3e25ec..982e9b1509d67 100644 --- a/pkgs/development/python-modules/pyfritzhome/default.nix +++ b/pkgs/development/python-modules/pyfritzhome/default.nix @@ -1,15 +1,17 @@ { lib , buildPythonPackage +, cryptography , fetchFromGitHub , pytestCheckHook , pythonOlder , requests +, setuptools }: buildPythonPackage rec { pname = "pyfritzhome"; - version = "0.6.9"; - format = "setuptools"; + version = "0.6.10"; + pyproject = true; disabled = pythonOlder "3.7"; @@ -17,10 +19,15 @@ buildPythonPackage rec { owner = "hthiery"; repo = "python-fritzhome"; rev = "refs/tags/${version}"; - hash = "sha256-BhJkUbTAzMkzWINVoBDG2Vnf4Fd+kX1oBkXWD7UNbTw="; + hash = "sha256-jdv49cpd2ewfrhWzjWM5Uxhaj3UZfOXMMOZeobpXe0E="; }; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ + cryptography requests ]; @@ -35,6 +42,7 @@ buildPythonPackage rec { meta = with lib; { description = "Python Library to access AVM FRITZ!Box homeautomation"; homepage = "https://github.com/hthiery/python-fritzhome"; + changelog = "https://github.com/hthiery/python-fritzhome/releases/tag/${version}"; license = licenses.mit; maintainers = with maintainers; [ hexa ]; }; diff --git a/pkgs/development/python-modules/pygit2/default.nix b/pkgs/development/python-modules/pygit2/default.nix index 50211bda64002..0a2e73c3c18e8 100644 --- a/pkgs/development/python-modules/pygit2/default.nix +++ b/pkgs/development/python-modules/pygit2/default.nix @@ -10,24 +10,29 @@ , pycparser , pytestCheckHook , pythonOlder +, setuptools }: buildPythonPackage rec { pname = "pygit2"; - version = "1.13.3"; - format = "setuptools"; + version = "1.14.0"; + pyproject = true; - disabled = pythonOlder "3.7"; + disabled = pythonOlder "3.9"; src = fetchPypi { inherit pname version; - hash = "sha256-AlfGJgEeSvuZvbIIdUQ/cG+EIB1MkmN/AiFbmOrBPe0="; + hash = "sha256-9SntlmDtv5tiXMrn5RCY73NmLmFJZgkAl3LUYnqCaqg="; }; preConfigure = lib.optionalString stdenv.isDarwin '' export DYLD_LIBRARY_PATH="${libgit2}/lib" ''; + nativeBuildInputs = [ + setuptools + ]; + buildInputs = [ libgit2 ]; @@ -65,6 +70,7 @@ buildPythonPackage rec { meta = with lib; { description = "A set of Python bindings to the libgit2 shared library"; homepage = "https://github.com/libgit2/pygit2"; + changelog = "https://github.com/libgit2/pygit2/blob/v${version}/CHANGELOG.md"; license = licenses.gpl2Only; maintainers = with maintainers; [ ]; }; diff --git a/pkgs/development/python-modules/pygitguardian/default.nix b/pkgs/development/python-modules/pygitguardian/default.nix index 3d3590a371047..ad97cd9442503 100644 --- a/pkgs/development/python-modules/pygitguardian/default.nix +++ b/pkgs/development/python-modules/pygitguardian/default.nix @@ -5,6 +5,7 @@ , marshmallow-dataclass , pytestCheckHook , pythonOlder +, pythonRelaxDepsHook , requests , responses , setuptools @@ -26,7 +27,12 @@ buildPythonPackage rec { hash = "sha256-ybl6QOLb1xE6v0D1C2wKMsSU+r2gWzj24Q4pPIMBsCY="; }; + pythonRelaxDeps = [ + "marshmallow-dataclass" + ]; + nativeBuildInputs = [ + pythonRelaxDepsHook setuptools ]; diff --git a/pkgs/development/python-modules/pygls/default.nix b/pkgs/development/python-modules/pygls/default.nix index 74e5b243e60b9..9c4d50843e22c 100644 --- a/pkgs/development/python-modules/pygls/default.nix +++ b/pkgs/development/python-modules/pygls/default.nix @@ -1,19 +1,21 @@ { lib , stdenv , buildPythonPackage -, pythonOlder , fetchFromGitHub -, poetry-core , lsprotocol -, typeguard +, poetry-core , pytest-asyncio , pytestCheckHook +, pythonOlder +, pythonRelaxDepsHook +, typeguard +, websockets }: buildPythonPackage rec { pname = "pygls"; - version = "1.2.1"; - format = "pyproject"; + version = "1.3.0"; + pyproject = true; disabled = pythonOlder "3.7"; @@ -21,11 +23,17 @@ buildPythonPackage rec { owner = "openlawlibrary"; repo = "pygls"; rev = "refs/tags/v${version}"; - hash = "sha256-ARez9fs50kScfMp/W/aFIOcJonpFrcfyrzJuVwou7fk="; + hash = "sha256-6+SMlBTi+jw+bAUYqbaxXT5QygZFj4FeeEp6bch8M1s="; }; + pythonRelaxDeps = [ + # https://github.com/openlawlibrary/pygls/pull/432 + "lsprotocol" + ]; + nativeBuildInputs = [ poetry-core + pythonRelaxDepsHook ]; propagatedBuildInputs = [ @@ -33,6 +41,12 @@ buildPythonPackage rec { typeguard ]; + passthru.optional-dependencies = { + ws = [ + websockets + ]; + }; + nativeCheckInputs = [ pytest-asyncio pytestCheckHook @@ -46,12 +60,14 @@ buildPythonPackage rec { ulimit -n 1024 ''; - pythonImportsCheck = [ "pygls" ]; + pythonImportsCheck = [ + "pygls" + ]; meta = with lib; { description = "Pythonic generic implementation of the Language Server Protocol"; homepage = "https://github.com/openlawlibrary/pygls"; - changelog = "https://github.com/openlawlibrary/pygls/blob/${src.rev}/CHANGELOG.md"; + changelog = "https://github.com/openlawlibrary/pygls/blob/${version}/CHANGELOG.md"; license = licenses.asl20; maintainers = with maintainers; [ kira-bruneau ]; }; diff --git a/pkgs/development/python-modules/pygmo/default.nix b/pkgs/development/python-modules/pygmo/default.nix index 0ce6a2fd3f990..d311df0a45304 100644 --- a/pkgs/development/python-modules/pygmo/default.nix +++ b/pkgs/development/python-modules/pygmo/default.nix @@ -28,7 +28,7 @@ toPythonModule (stdenv.mkDerivation rec { }; cmakeFlags = [ - "-DPYGMO_INSTALL_PATH=${placeholder "out"}/lib/${python.libPrefix}/site-packages" + "-DPYGMO_INSTALL_PATH=${placeholder "out"}/${python.sitePackages}" ]; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/pygmt/default.nix b/pkgs/development/python-modules/pygmt/default.nix index 31b9fdd7c3a12..c455bbcfab16e 100644 --- a/pkgs/development/python-modules/pygmt/default.nix +++ b/pkgs/development/python-modules/pygmt/default.nix @@ -18,7 +18,7 @@ buildPythonPackage rec { pname = "pygmt"; - version = "0.10.0"; + version = "0.11.0"; format = "pyproject"; disabled = pythonOlder "3.9"; @@ -27,7 +27,7 @@ buildPythonPackage rec { owner = "GenericMappingTools"; repo = "pygmt"; rev = "refs/tags/v${version}"; - hash = "sha256-+bkjqHjJIwk44u226q6xqeGmwMWleyc4lRfMZdDjVBA="; + hash = "sha256-DbewB/lP44bpNSQ4ht7n0coS2Ml7qmEU4CP91p5YtZg="; }; postPatch = '' diff --git a/pkgs/development/python-modules/pyhanko-certvalidator/default.nix b/pkgs/development/python-modules/pyhanko-certvalidator/default.nix index 8d3037baa4546..e55936a8e41c3 100644 --- a/pkgs/development/python-modules/pyhanko-certvalidator/default.nix +++ b/pkgs/development/python-modules/pyhanko-certvalidator/default.nix @@ -16,7 +16,7 @@ buildPythonPackage rec { pname = "pyhanko-certvalidator"; - version = "0.26.2"; + version = "0.26.3"; pyproject = true; disabled = pythonOlder "3.7"; @@ -25,7 +25,7 @@ buildPythonPackage rec { owner = "MatthiasValvekens"; repo = "certvalidator"; rev = "refs/tags/v${version}"; - hash = "sha256-yGFaRpAOTbuVfY5UefC1sdJS4FFkgkIZnHHG35p3n3E="; + hash = "sha256-uUmsWiN182g+kxrCny7UNLDHdAdqKk64w6vnjmGBNjM="; }; postPatch = '' @@ -68,8 +68,8 @@ buildPythonPackage rec { "test_revocation_mode_hard_aiohttp_autofetch" # The path could not be validated because no revocation information could be found for intermediate certificate 1 "test_revocation_mode_hard" - # certificate expired 2022-09-17 - "test_revocation_mode_soft" + # ValueError: Hash algorithm not known for ed448 + "test_ed" ]; pythonImportsCheck = [ diff --git a/pkgs/development/python-modules/pyhomematic/default.nix b/pkgs/development/python-modules/pyhomematic/default.nix index c3e26156f5a2a..03e7babfb4fe7 100644 --- a/pkgs/development/python-modules/pyhomematic/default.nix +++ b/pkgs/development/python-modules/pyhomematic/default.nix @@ -7,14 +7,14 @@ buildPythonPackage rec { pname = "pyhomematic"; - version = "0.1.77"; + version = "0.1.78"; format = "setuptools"; disabled = !isPy3k; src = fetchPypi { inherit pname version; - sha256 = "00d95c21b95a17bc07586f69c976fb343a103adc0954d7b2d56c7160665625cb"; + sha256 = "sha256-uB9aDa1urIwL2DBdBwPi0sHWPW7SUZ3EaAjuMLSOudc="; }; checkPhase = '' diff --git a/pkgs/development/python-modules/pyisemail/default.nix b/pkgs/development/python-modules/pyisemail/default.nix new file mode 100644 index 0000000000000..dfa60a85eaf65 --- /dev/null +++ b/pkgs/development/python-modules/pyisemail/default.nix @@ -0,0 +1,47 @@ +{ lib +, buildPythonPackage +, dnspython +, fetchFromGitHub +, hatchling +, pytestCheckHook +, pythonOlder +}: + +buildPythonPackage rec { + pname = "pyisemail"; + version = "2.0.1"; + pyproject = true; + + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "michaelherold"; + repo = "pyIsEmail"; + rev = "refs/tags/v${version}"; + hash = "sha256-bJCaVUhvEAoQ8zMsbcb1Et728XHt+shEPhhBzPzY/vo="; + }; + + nativeBuildInputs = [ + hatchling + ]; + + propagatedBuildInputs = [ + dnspython + ]; + + nativeCheckInputs = [ + pytestCheckHook + ]; + + pythonImportsCheck = [ + "pyisemail" + ]; + + meta = with lib; { + description = "Module for email validation"; + homepage = "https://github.com/michaelherold/pyIsEmail"; + changelog = "https://github.com/michaelherold/pyIsEmail/blob/${version}/CHANGELOG.rst"; + license = licenses.mit; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/pykoplenti/default.nix b/pkgs/development/python-modules/pykoplenti/default.nix index 99f90e17b028a..a8930149b1bb6 100644 --- a/pkgs/development/python-modules/pykoplenti/default.nix +++ b/pkgs/development/python-modules/pykoplenti/default.nix @@ -7,33 +7,33 @@ , pycryptodome , pydantic , pythonOlder +, pythonRelaxDepsHook , setuptools }: buildPythonPackage rec { pname = "pykoplenti"; version = "1.2.2"; - format = "pyproject"; + pyproject = true; disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "stegm"; - repo = pname; + repo = "pykoplenti"; rev = "refs/tags/v${version}"; hash = "sha256-2sGkHCIGo1lzLurvQBmq+16sodAaK8v+mAbIH/Gd3+E="; }; + pythonRelaxDeps = [ + "pydantic" + ]; + nativeBuildInputs = [ + pythonRelaxDepsHook setuptools ]; - postPatch = '' - # remove with 1.1.0 - substituteInPlace setup.cfg \ - --replace 'version = unreleased' 'version = ${version}' - ''; - propagatedBuildInputs = [ aiohttp pycryptodome @@ -50,11 +50,14 @@ buildPythonPackage rec { # Project has no tests doCheck = false; - pythonImportsCheck = [ "pykoplenti" ]; + pythonImportsCheck = [ + "pykoplenti" + ]; meta = with lib; { description = "Python REST client API for Kostal Plenticore Inverters"; homepage = "https://github.com/stegm/pykoplenti/"; + changelog = "https://github.com/stegm/pykoplenti/releases/tag/v${version}"; license = with licenses; [ asl20 ]; maintainers = with maintainers; [ fab ]; }; diff --git a/pkgs/development/python-modules/pykwalify/default.nix b/pkgs/development/python-modules/pykwalify/default.nix index 790b41626bf0c..a49967ee6c3e3 100644 --- a/pkgs/development/python-modules/pykwalify/default.nix +++ b/pkgs/development/python-modules/pykwalify/default.nix @@ -1,10 +1,10 @@ { lib , buildPythonPackage +, fetchpatch , python-dateutil , docopt , fetchPypi , pytestCheckHook -, pyyaml , ruamel-yaml , testfixtures }: @@ -19,10 +19,18 @@ buildPythonPackage rec { hash = "sha256-eWsq0+1MuZuIMItTP7L1WcMPpu+0+p/aETR/SD0kWIQ="; }; + patches = [ + # fix test failures with ruamel.yaml 0.18+ + (fetchpatch { + name = "pykwalify-fix-tests-ruamel-yaml-0.18.patch"; + url = "https://github.com/Grokzen/pykwalify/commit/57bb2ba5c28b6928edb3f07ef581a5a807524baf.diff"; + hash = "sha256-XUiebDzFSvNrPpRMoc2lv9m+30cfFh0N0rznMiSdQ/0="; + }) + ]; + propagatedBuildInputs = [ python-dateutil docopt - pyyaml ruamel-yaml ]; @@ -31,10 +39,6 @@ buildPythonPackage rec { testfixtures ]; - disabledTests = [ - "test_multi_file_support" - ]; - pythonImportsCheck = [ "pykwalify" ]; meta = with lib; { diff --git a/pkgs/development/python-modules/pylgnetcast/default.nix b/pkgs/development/python-modules/pylgnetcast/default.nix index 1e18c9f93aeae..f4811bf02dfc1 100644 --- a/pkgs/development/python-modules/pylgnetcast/default.nix +++ b/pkgs/development/python-modules/pylgnetcast/default.nix @@ -7,7 +7,7 @@ buildPythonPackage rec { pname = "pylgnetcast"; - version = "0.3.8"; + version = "0.3.9"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -16,7 +16,7 @@ buildPythonPackage rec { owner = "Drafteed"; repo = "python-lgnetcast"; rev = "refs/tags/v${version}"; - hash = "sha256-UxZ4XM7n0Ryd4D967fXPTA4sqTrZwS8Tj/Q8kNGdk8Q="; + hash = "sha256-5lzLknuGLQryLCc4YQJn8AGuWTiSM90+8UTQ/WYfASM="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pylint-django/default.nix b/pkgs/development/python-modules/pylint-django/default.nix index d12e7268a24f8..d3f22e8532ef9 100644 --- a/pkgs/development/python-modules/pylint-django/default.nix +++ b/pkgs/development/python-modules/pylint-django/default.nix @@ -1,8 +1,11 @@ { lib , buildPythonPackage , django +, django-tables2 +, django-tastypie , factory-boy , fetchFromGitHub +, poetry-core , pylint-plugin-utils , pytestCheckHook , pythonOlder @@ -11,33 +14,43 @@ buildPythonPackage rec { pname = "pylint-django"; version = "2.5.4"; - format = "setuptools"; + pyproject = true; disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "PyCQA"; - repo = pname; + repo = "pylint-django"; rev = "refs/tags/v${version}"; hash = "sha256-MNgu3LvFoohXA+JzUiHIaYFw0ssEe+H5T8Ea56LcGuI="; }; + nativeBuildInputs = [ + poetry-core + ]; + propagatedBuildInputs = [ - django pylint-plugin-utils ]; + passthru.optional-dependencies = { + with_django = [ + django + ]; + }; + nativeCheckInputs = [ + django-tables2 + django-tastypie factory-boy pytestCheckHook ]; disabledTests = [ - # AttributeError, AssertionError - "external_django_tables2_noerror_meta_class" - "external_tastypie_noerror_foreign_key" + # AttributeError: module 'pylint.interfaces' has no attribute 'IAstroidChecker' + "test_migrations_plugin" "func_noerror_model_unicode_lambda" - "0001_noerror_initial" + "test_linter_should_be_pickleable_with_pylint_django_plugin_installed" ]; pythonImportsCheck = [ @@ -47,6 +60,7 @@ buildPythonPackage rec { meta = with lib; { description = "Pylint plugin to analyze Django applications"; homepage = "https://github.com/PyCQA/pylint-django"; + changelog = "https://github.com/pylint-dev/pylint-django/releases/tag/v${version}"; license = licenses.gpl2Plus; maintainers = with maintainers; [ kamadorueda ]; }; diff --git a/pkgs/development/python-modules/pylint-plugin-utils/default.nix b/pkgs/development/python-modules/pylint-plugin-utils/default.nix index a8cff38009608..cdc29eb19621a 100644 --- a/pkgs/development/python-modules/pylint-plugin-utils/default.nix +++ b/pkgs/development/python-modules/pylint-plugin-utils/default.nix @@ -1,6 +1,7 @@ { lib , buildPythonPackage , fetchFromGitHub +, poetry-core , pylint , pytestCheckHook , pythonOlder @@ -9,18 +10,22 @@ buildPythonPackage rec { pname = "pylint-plugin-utils"; - version = "0.7"; - format = "setuptools"; + version = "0.8.2"; + pyproject = true; disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "PyCQA"; - repo = pname; - rev = version; - hash = "sha256-uDsSSUWdlzuQz6umoYLbIotOYNEnLQu041ZZVMRd2ww="; + repo = "pylint-plugin-utils"; + rev = "refs/tags/${version}"; + hash = "sha256-xuPU1txfB+6+zJjtlfvNA950S5n7/PWPPFn1F3RtvCc="; }; + nativeBuildInputs = [ + poetry-core + ]; + propagatedBuildInputs = [ pylint toml diff --git a/pkgs/development/python-modules/pylutron-caseta/default.nix b/pkgs/development/python-modules/pylutron-caseta/default.nix index e069e902687f8..c95a36aa8ecac 100644 --- a/pkgs/development/python-modules/pylutron-caseta/default.nix +++ b/pkgs/development/python-modules/pylutron-caseta/default.nix @@ -1,37 +1,50 @@ { lib , async-timeout , buildPythonPackage +, click , cryptography , fetchFromGitHub +, hatchling , pytest-asyncio , pytest-timeout , pytestCheckHook , pythonOlder -, setuptools +, xdg +, zeroconf }: buildPythonPackage rec { pname = "pylutron-caseta"; - version = "0.18.3"; - format = "pyproject"; + version = "0.19.0"; + pyproject = true; disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "gurumitts"; - repo = pname; + repo = "pylutron-caseta"; rev = "refs/tags/v${version}"; - hash = "sha256-tjmMu7LUne+hLLTXGqHhci9/PZiuQ10mQaARvL2sdIM="; + hash = "sha256-/xTHtzXEFGL2/oP1oVxJj7GO3fSZ5CwjXDdp6OLhlzM="; }; nativeBuildInputs = [ - setuptools + hatchling ]; propagatedBuildInputs = [ cryptography + ] ++ lib.optionals (pythonOlder "3.11") [ + async-timeout ]; + passthru.optional-dependencies = { + cli = [ + click + xdg + zeroconf + ]; + }; + nativeCheckInputs = [ pytest-asyncio pytest-timeout diff --git a/pkgs/development/python-modules/pylutron/default.nix b/pkgs/development/python-modules/pylutron/default.nix index b55696d840f97..f217b46179f95 100644 --- a/pkgs/development/python-modules/pylutron/default.nix +++ b/pkgs/development/python-modules/pylutron/default.nix @@ -5,12 +5,12 @@ buildPythonPackage rec { pname = "pylutron"; - version = "0.2.10"; + version = "0.2.11"; format = "setuptools"; src = fetchPypi { inherit pname version; - hash = "sha256-DKwjBQXC7O/8bFxq5shJJxRV3HYgBeS7tJXg4m3vQMY="; + hash = "sha256-9M7bCZD3zGZM62ID0yB/neKkF+6UW8x5m2y5vj/mYes="; }; # Project has no tests diff --git a/pkgs/development/python-modules/pylxd/default.nix b/pkgs/development/python-modules/pylxd/default.nix index f3965de56b859..ee860eb6f1058 100644 --- a/pkgs/development/python-modules/pylxd/default.nix +++ b/pkgs/development/python-modules/pylxd/default.nix @@ -14,14 +14,14 @@ buildPythonPackage rec { pname = "pylxd"; - version = "2.3.1"; + version = "2.3.2"; format = "setuptools"; src = fetchFromGitHub { owner = "lxc"; repo = "pylxd"; - rev = version; - hash = "sha256-eDRCJYjmBndMnSNuS6HD/2p/KhzqJq2qPAzMk7kC5UM="; + rev = "refs/tags/${version}"; + hash = "sha256-Q4GMz7HFpJNPYlYgLhE0a7mVCwNpdbw4XVcUGQ2gUJ0="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pymatting/01-kdtree-signature.patch b/pkgs/development/python-modules/pymatting/01-kdtree-signature.patch deleted file mode 100644 index 2193b260aea1d..0000000000000 --- a/pkgs/development/python-modules/pymatting/01-kdtree-signature.patch +++ /dev/null @@ -1,13 +0,0 @@ -diff --git a/tests/test_kdtree.py b/tests/test_kdtree.py -index 0110083..049fa07 100644 ---- a/tests/test_kdtree.py -+++ b/tests/test_kdtree.py -@@ -23,7 +23,7 @@ def run_kdtree(): - - tree = cKDTree(data_points) - -- distances2, indices2 = tree.query(query_points, k=k, n_jobs=-1) -+ distances2, indices2 = tree.query(query_points, k=k) - - t2 = time.perf_counter() - diff --git a/pkgs/development/python-modules/pymatting/default.nix b/pkgs/development/python-modules/pymatting/default.nix index 5e3b39dd523a7..371a4a03c2f38 100644 --- a/pkgs/development/python-modules/pymatting/default.nix +++ b/pkgs/development/python-modules/pymatting/default.nix @@ -4,14 +4,15 @@ , numba , numpy , pillow -, scipy , pytestCheckHook -, +, scipy +, setuptools }: + buildPythonPackage rec { pname = "pymatting"; version = "1.1.10"; - format = "setuptools"; + pyproject = true; src = fetchFromGitHub { owner = "pymatting"; @@ -20,7 +21,9 @@ buildPythonPackage rec { hash = "sha256-wHCTqcBvVN/pTXH3iW57DPpMEsnehutRQB5NaugS6Zs="; }; - patches = [ ./01-kdtree-signature.patch ]; + nativeBuildInputs = [ + setuptools + ]; propagatedBuildInputs = [ numba @@ -29,12 +32,14 @@ buildPythonPackage rec { scipy ]; - pythonImportsCheck = [ "pymatting" ]; - nativeCheckInputs = [ pytestCheckHook ]; + pythonImportsCheck = [ + "pymatting" + ]; + disabledTests = [ # no access to input data set # see: https://github.com/pymatting/pymatting/blob/master/tests/download_images.py diff --git a/pkgs/development/python-modules/pymc/default.nix b/pkgs/development/python-modules/pymc/default.nix index d6dfaaa2cca25..5427eafb1035b 100644 --- a/pkgs/development/python-modules/pymc/default.nix +++ b/pkgs/development/python-modules/pymc/default.nix @@ -52,7 +52,7 @@ buildPythonPackage rec { meta = with lib; { description = "Bayesian estimation, particularly using Markov chain Monte Carlo (MCMC)"; - homepage = "https://github.com/pymc-devs/pymc3"; + homepage = "https://github.com/pymc-devs/pymc"; changelog = "https://github.com/pymc-devs/pymc/releases/tag/v${version}"; license = licenses.asl20; maintainers = with maintainers; [ nidabdella ]; diff --git a/pkgs/development/python-modules/pymemcache/default.nix b/pkgs/development/python-modules/pymemcache/default.nix index 68925fe7f4a9d..74784a35ff953 100644 --- a/pkgs/development/python-modules/pymemcache/default.nix +++ b/pkgs/development/python-modules/pymemcache/default.nix @@ -5,6 +5,7 @@ , mock , six , pytestCheckHook +, python-memcached , pythonOlder , zstd , stdenv @@ -32,6 +33,7 @@ buildPythonPackage rec { faker mock pytestCheckHook + python-memcached zstd ]; @@ -39,10 +41,7 @@ buildPythonPackage rec { sed -i "/--cov/d" setup.cfg ''; - disabledTests = [ - # python-memcached is not available (last release in 2017) - "TestClientSocketConnect" - ] ++ lib.optionals stdenv.is32bit [ + disabledTests = lib.optionals stdenv.is32bit [ # test_compressed_complex is broken on 32-bit platforms # this can be removed on the next version bump # see also https://github.com/pinterest/pymemcache/pull/480 diff --git a/pkgs/development/python-modules/pymilvus/default.nix b/pkgs/development/python-modules/pymilvus/default.nix index f62b039bbb45b..e0a68e2a43859 100644 --- a/pkgs/development/python-modules/pymilvus/default.nix +++ b/pkgs/development/python-modules/pymilvus/default.nix @@ -5,12 +5,14 @@ , gitpython , grpcio , grpcio-testing +, minio , mmh3 , pandas +, pyarrow , pytestCheckHook -, python , pythonOlder , pythonRelaxDepsHook +, requests , scikit-learn , setuptools-scm , ujson @@ -19,19 +21,20 @@ buildPythonPackage rec { pname = "pymilvus"; - version = "2.3.3"; - format = "pyproject"; + version = "2.3.6"; + pyproject = true; disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "milvus-io"; - repo = pname; + repo = "pymilvus"; rev = "refs/tags/v${version}"; - hash = "sha256-qnm6JaeF2Li2NgVGZ6yJ2yz1n3pVZqkF4Ee+q4v/kdA="; + hash = "sha256-K7k3MTOEm9+HDwMps9C8Al0Jmp1ptJw3pN1LEBOUz0U="; }; pythonRelaxDeps = [ + "environs" "grpcio" ]; @@ -45,8 +48,11 @@ buildPythonPackage rec { propagatedBuildInputs = [ environs grpcio + minio mmh3 pandas + pyarrow + requests ujson ]; diff --git a/pkgs/development/python-modules/pyngo/default.nix b/pkgs/development/python-modules/pyngo/default.nix index 3616d5eaec6bb..a52a09166c5ee 100644 --- a/pkgs/development/python-modules/pyngo/default.nix +++ b/pkgs/development/python-modules/pyngo/default.nix @@ -20,7 +20,7 @@ buildPythonPackage rec { pname = "pyngo"; - version = "2.0.0"; + version = "2.0.1"; pyproject = true; disabled = pythonOlder "3.10"; @@ -29,7 +29,7 @@ buildPythonPackage rec { owner = "yezz123"; repo = "pyngo"; rev = "refs/tags/${version}"; - hash = "sha256-jHPZjS/J1VLpsLN2wg5UJCgavoSEs4Uogo4GI6bZMuY="; + hash = "sha256-wvy1L21AnQ4JP5seAh6DWksQU2OcbYTXKcixpFryH4w="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/pyngrok/default.nix b/pkgs/development/python-modules/pyngrok/default.nix index 04f474a8aed52..ad2b427feadd5 100644 --- a/pkgs/development/python-modules/pyngrok/default.nix +++ b/pkgs/development/python-modules/pyngrok/default.nix @@ -8,14 +8,14 @@ buildPythonPackage rec { pname = "pyngrok"; - version = "7.0.5"; + version = "7.1.0"; pyproject = true; disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; - hash = "sha256-YTe9n5cZLYQ9ghTOF8MHg/1d8iRElPHNnAQj0pnEjR4="; + hash = "sha256-M+yMx788hUfTmGX7gFyvUvd1fH/fK7tNWdFpiH3m2jA="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/pynitrokey/default.nix b/pkgs/development/python-modules/pynitrokey/default.nix index c00032cb2c4e2..58f54f148866a 100644 --- a/pkgs/development/python-modules/pynitrokey/default.nix +++ b/pkgs/development/python-modules/pynitrokey/default.nix @@ -30,7 +30,7 @@ let pname = "pynitrokey"; - version = "0.4.44"; + version = "0.4.45"; mainProgram = "nitropy"; in @@ -40,7 +40,7 @@ buildPythonPackage { src = fetchPypi { inherit pname version; - hash = "sha256-SWLxiUAE8AVa+EYjOk0kzOcW65TJbvUe627VmJY7nFY="; + hash = "sha256-iY4ThrmXP7pEjTYYU4lePVAbuJGTdHX3iKswXzuf7W8="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pynndescent/default.nix b/pkgs/development/python-modules/pynndescent/default.nix index 9817ba9935d9b..2488222b5f4d5 100644 --- a/pkgs/development/python-modules/pynndescent/default.nix +++ b/pkgs/development/python-modules/pynndescent/default.nix @@ -1,13 +1,13 @@ { lib , buildPythonPackage , fetchPypi -, fetchpatch , importlib-metadata , joblib , llvmlite , numba , scikit-learn , scipy +, setuptools , pytestCheckHook , pythonOlder }: @@ -15,7 +15,7 @@ buildPythonPackage rec { pname = "pynndescent"; version = "0.5.11"; - format = "setuptools"; + pyproject = true; disabled = pythonOlder "3.6"; @@ -24,12 +24,8 @@ buildPythonPackage rec { hash = "sha256-b0TO2dWp2iyH2bL/8wu1MIVAwGV2BeTVzeftMnW7rVA="; }; - patches = [ - # https://github.com/lmcinnes/pynndescent/pull/224 - (fetchpatch { - url = "https://github.com/lmcinnes/pynndescent/commit/86e0d716a3a4d5f4e6a0a3c2952f6fe339524e96.patch"; - hash = "sha256-dfnT5P9Qsn/nSAr4Ysqo/olbLLfoZXvBRz33yzhN3J4="; - }) + nativeBuildInputs = [ + setuptools ]; propagatedBuildInputs = [ @@ -46,16 +42,6 @@ buildPythonPackage rec { pytestCheckHook ]; - disabledTests = [ - # numpy.core._exceptions._UFuncNoLoopError - "test_sparse_nn_descent_query_accuracy_angular" - "test_nn_descent_query_accuracy_angular" - "test_alternative_distances" - # scipy: ValueError: Unknown Distance Metric: wminkowski - # https://github.com/scikit-learn/scikit-learn/pull/21741 - "test_weighted_minkowski" - ]; - pythonImportsCheck = [ "pynndescent" ]; diff --git a/pkgs/development/python-modules/pyopengl/default.nix b/pkgs/development/python-modules/pyopengl/default.nix index 10333862bb8db..ddffa534ab85c 100644 --- a/pkgs/development/python-modules/pyopengl/default.nix +++ b/pkgs/development/python-modules/pyopengl/default.nix @@ -23,22 +23,26 @@ buildPythonPackage rec { # Theses lines are patching the name of dynamic libraries # so pyopengl can find them at runtime. substituteInPlace OpenGL/platform/glx.py \ - --replace "'GL'" "'${pkgs.libGL}/lib/libGL${ext}'" \ - --replace "'GLU'" "'${pkgs.libGLU}/lib/libGLU${ext}'" \ - --replace "'glut'" "'${pkgs.freeglut}/lib/libglut${ext}'" \ - --replace "'GLESv1_CM'," "'${pkgs.libGL}/lib/libGLESv1_CM${ext}'," \ - --replace "'GLESv2'," "'${pkgs.libGL}/lib/libGLESv2${ext}'," + --replace '"OpenGL",' '"${pkgs.libGL}/lib/libOpenGL${ext}",' \ + --replace '"GL",' '"${pkgs.libGL}/lib/libGL${ext}",' \ + --replace '"GLU",' '"${pkgs.libGLU}/lib/libGLU${ext}",' \ + --replace '"GLX",' '"${pkgs.libglvnd}/lib/libGLX${ext}",' \ + --replace '"glut",' '"${pkgs.freeglut}/lib/libglut${ext}",' \ + --replace '"GLESv1_CM",' '"${pkgs.libGL}/lib/libGLESv1_CM${ext}",' \ + --replace '"GLESv2",' '"${pkgs.libGL}/lib/libGLESv2${ext}",' \ + --replace '"gle",' '"${pkgs.gle}/lib/libgle${ext}",' \ + --replace "'EGL'" "'${pkgs.libGL}/lib/libEGL${ext}'" substituteInPlace OpenGL/platform/egl.py \ --replace "('OpenGL','GL')" "('${pkgs.libGL}/lib/libOpenGL${ext}', '${pkgs.libGL}/lib/libGL${ext}')" \ --replace "'GLU'," "'${pkgs.libGLU}/lib/libGLU${ext}'," \ --replace "'glut'," "'${pkgs.freeglut}/lib/libglut${ext}'," \ --replace "'GLESv1_CM'," "'${pkgs.libGL}/lib/libGLESv1_CM${ext}'," \ --replace "'GLESv2'," "'${pkgs.libGL}/lib/libGLESv2${ext}'," \ + --replace "'gle'," '"${pkgs.gle}/lib/libgle${ext}",' \ --replace "'EGL'," "'${pkgs.libGL}/lib/libEGL${ext}'," substituteInPlace OpenGL/platform/darwin.py \ --replace "'OpenGL'," "'${pkgs.libGL}/lib/libGL${ext}'," \ --replace "'GLUT'," "'${pkgs.freeglut}/lib/libglut${ext}'," - # TODO: patch 'gle' in OpenGL/platform/egl.py '' + '' # https://github.com/NixOS/nixpkgs/issues/76822 # pyopengl introduced a new "robust" way of loading libraries in 3.1.4. @@ -48,7 +52,7 @@ buildPythonPackage rec { # The following patch put back the "name" (i.e. the path) in the # list of possible files. substituteInPlace OpenGL/platform/ctypesloader.py \ - --replace "filenames_to_try = []" "filenames_to_try = [name]" + --replace "filenames_to_try = [base_name]" "filenames_to_try = [name]" ''; # Need to fix test runner @@ -61,7 +65,7 @@ buildPythonPackage rec { pythonImportsCheck = "OpenGL"; meta = with lib; { - homepage = "https://pyopengl.sourceforge.net/"; + homepage = "https://mcfletch.github.io/pyopengl/"; description = "PyOpenGL, the Python OpenGL bindings"; longDescription = '' PyOpenGL is the cross platform Python binding to OpenGL and diff --git a/pkgs/development/python-modules/pyosmium/default.nix b/pkgs/development/python-modules/pyosmium/default.nix index d35b5d7241b6e..08599707498e1 100644 --- a/pkgs/development/python-modules/pyosmium/default.nix +++ b/pkgs/development/python-modules/pyosmium/default.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchFromGitHub -, fetchpatch , cmake , libosmium , protozero @@ -10,12 +9,14 @@ , bzip2 , zlib , pybind11 -, shapely , pythonOlder +, pytest-httpserver +, pytestCheckHook +, shapely +, werkzeug , isPyPy , lz4 , requests -, pytestCheckHook }: buildPythonPackage rec { @@ -32,14 +33,6 @@ buildPythonPackage rec { hash = "sha256-DBFDAKNrD93MRXjoM8dIJQ/HJ9Aj8oMJuPVQxTrKYfI="; }; - patches = [ - # Compatibility with recent pybind versions - (fetchpatch { - url = "https://github.com/osmcode/pyosmium/commit/31b1363389b423f49e14140ce868ecac83e92f69.patch"; - hash = "sha256-maBuwzyZ4/wVLLGVr4gZFZDKvJckUXiBluxZRPGETag="; - }) - ]; - nativeBuildInputs = [ cmake ]; @@ -64,6 +57,8 @@ buildPythonPackage rec { nativeCheckInputs = [ pytestCheckHook shapely + werkzeug + pytest-httpserver ]; meta = with lib; { diff --git a/pkgs/development/python-modules/pyosohotwaterapi/default.nix b/pkgs/development/python-modules/pyosohotwaterapi/default.nix new file mode 100644 index 0000000000000..bd2b10976a070 --- /dev/null +++ b/pkgs/development/python-modules/pyosohotwaterapi/default.nix @@ -0,0 +1,63 @@ +{ lib +, aiohttp +, buildPythonPackage +, fetchFromGitHub +, loguru +, numpy +, pythonOlder +, setuptools +, unasync +, urllib3 +}: + +buildPythonPackage rec { + pname = "pyosohotwaterapi"; + version = "1.1.4"; + pyproject = true; + + disabled = pythonOlder "3.10"; + + src = fetchFromGitHub { + owner = "osohotwateriot"; + repo = "apyosohotwaterapi"; + rev = "refs/tags/${version}"; + hash = "sha256-7FLGmmndrFqSl4oC8QFIYNlFJPr+xbiZG5ZRt4vx8+s="; + }; + + postPatch = '' + # https://github.com/osohotwateriot/apyosohotwaterapi/pull/3 + substituteInPlace requirements.txt \ + --replace "pre-commit" "" + ''; + + nativeBuildInputs = [ + setuptools + unasync + ]; + + propagatedBuildInputs = [ + aiohttp + loguru + numpy + urllib3 + ]; + + preBuild = '' + export HOME=$(mktemp -d) + ''; + + # Module has no tests + doCheck = false; + + pythonImportsCheck = [ + "apyosoenergyapi" + ]; + + meta = with lib; { + description = "Module for using the OSO Hotwater API"; + homepage = "https://github.com/osohotwateriot/apyosohotwaterapi"; + changelog = "https://github.com/osohotwateriot/apyosohotwaterapi/releases/tag/${version}"; + license = licenses.mit; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/pyppeteer/default.nix b/pkgs/development/python-modules/pyppeteer/default.nix index 1cfb6d85680fb..b0276c77bc055 100644 --- a/pkgs/development/python-modules/pyppeteer/default.nix +++ b/pkgs/development/python-modules/pyppeteer/default.nix @@ -18,17 +18,24 @@ buildPythonPackage rec { pname = "pyppeteer"; version = "1.0.2"; - format = "pyproject"; + pyproject = true; - disabled = pythonOlder "3.6"; + disabled = pythonOlder "3.7"; src = fetchFromGitHub { - owner = pname; - repo = pname; - rev = version; + owner = "pyppeteer"; + repo = "pyppeteer"; + rev = "refs/tags/${version}"; hash = "sha256-izMaWtJdkLHMQbyq7o7n46xB8dOHXZ5uO0UXt+twjL4="; }; + postPatch = '' + substituteInPlace pyproject.toml \ + --replace 'pyee = "^8.1.0"' 'pyee = "*"' \ + --replace 'urllib3 = "^1.25.8"' 'urllib3 = "*"' \ + --replace 'websockets = "^10.0"' 'websockets = "*"' + ''; + nativeBuildInputs = [ poetry-core ]; @@ -49,12 +56,6 @@ buildPythonPackage rec { pytestCheckHook ]; - postPatch = '' - substituteInPlace pyproject.toml \ - --replace 'pyee = "^8.1.0"' 'pyee = "*"' \ - --replace 'websockets = "^9.1"' 'websockets = "*"' - ''; - disabledTestPaths = [ # Requires network access "tests/test_browser.py" @@ -89,6 +90,7 @@ buildPythonPackage rec { meta = with lib; { description = "Headless chrome/chromium automation library (unofficial port of puppeteer)"; homepage = "https://github.com/pyppeteer/pyppeteer"; + changelog = "https://github.com/pyppeteer/pyppeteer/blob/${version}/CHANGELOG.md"; license = licenses.mit; maintainers = with maintainers; [ kmein ]; }; diff --git a/pkgs/development/python-modules/pyprusalink/default.nix b/pkgs/development/python-modules/pyprusalink/default.nix index 0a1d8afc3bd1c..0356f899594b6 100644 --- a/pkgs/development/python-modules/pyprusalink/default.nix +++ b/pkgs/development/python-modules/pyprusalink/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "pyprusalink"; - version = "2.0.0"; + version = "2.0.1"; pyproject = true; disabled = pythonOlder "3.8"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "home-assistant-libs"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-wboyISggzC50cZ+J/NC0ytWXwCLBmBpP9/MtPkRb+Zs="; + hash = "sha256-wwH4LE8wi8eb7QwT7N1mNtVleoWscDEOu2vrXKDktwU="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/pyqtwebengine/default.nix b/pkgs/development/python-modules/pyqtwebengine/default.nix index 9dc076a5e8d14..4ad16f6ea0a6f 100644 --- a/pkgs/development/python-modules/pyqtwebengine/default.nix +++ b/pkgs/development/python-modules/pyqtwebengine/default.nix @@ -10,14 +10,14 @@ let inherit (darwin) autoSignDarwinBinariesHook; in buildPythonPackage (rec { pname = "PyQtWebEngine"; - version = "5.15.4"; + version = "5.15.6"; format = "pyproject"; disabled = isPy27; src = fetchPypi { inherit pname version; - sha256 = "06fc35hzg346a9c86dk7vzm1fakkgzn5l52jfq3bix3587sjip6f"; + sha256 = "sha256-riQe8qYceCk5xYtSwq6lOtmbMPOTTINY1eCm67P9ByE="; }; postPatch = '' diff --git a/pkgs/development/python-modules/pyradios/default.nix b/pkgs/development/python-modules/pyradios/default.nix index 8f9b96e5d12a6..42b46720fca2d 100644 --- a/pkgs/development/python-modules/pyradios/default.nix +++ b/pkgs/development/python-modules/pyradios/default.nix @@ -2,26 +2,26 @@ , buildPythonPackage , fetchPypi , appdirs -, requests +, httpx , setuptools , pythonOlder }: buildPythonPackage rec { pname = "pyradios"; - version = "2.0.0"; + version = "2.1.0"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - hash = "sha256-Uqg/owmf2popAhyanAUIdSWpXAGCWkQja4P944BpNhc="; + hash = "sha256-XTpw8bgFZo35PJngr9oweU6fY3KAphJsrEhkKzWHLIA="; }; propagatedBuildInputs = [ appdirs - requests + httpx setuptools ]; diff --git a/pkgs/development/python-modules/pyrdfa3/default.nix b/pkgs/development/python-modules/pyrdfa3/default.nix index ef6d33cb8e804..51f6411cb4fb4 100644 --- a/pkgs/development/python-modules/pyrdfa3/default.nix +++ b/pkgs/development/python-modules/pyrdfa3/default.nix @@ -1,17 +1,19 @@ { lib , buildPythonPackage -, fetchPypi , fetchpatch -, isPy27 -, rdflib +, fetchPypi , html5lib +, pythonOlder +, rdflib +, setuptools }: buildPythonPackage rec { pname = "pyrdfa3"; version = "3.5.3"; - format = "setuptools"; - disabled = isPy27; + pyproject = true; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit version; @@ -21,6 +23,7 @@ buildPythonPackage rec { patches = [ (fetchpatch { + # https://github.com/RDFLib/pyrdfa3/pull/40 name = "CVE-2022-4396.patch"; url = "https://github.com/RDFLib/pyrdfa3/commit/ffd1d62dd50d5f4190013b39cedcdfbd81f3ce3e.patch"; hash = "sha256-prRrOwylYcEqKLr/8LIpyJ5Yyt+6+HTUqH5sQXU8tqc="; @@ -31,21 +34,28 @@ buildPythonPackage rec { substituteInPlace setup.py \ --replace "'html = pyRdfa.rdflibparsers:StructuredDataParser'" "'html = pyRdfa.rdflibparsers:StructuredDataParser'," \ --replace "'hturtle = pyRdfa.rdflibparsers:HTurtleParser'" "'hturtle = pyRdfa.rdflibparsers:HTurtleParser'," + # https://github.com/RDFLib/pyrdfa3/issues/31 + substituteInPlace pyRdfa/utils.py \ + --replace "imp," "" ''; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ rdflib html5lib ]; - # Does not work with python3 - doCheck = false; - - pythonImportsCheck = [ "pyRdfa" ]; + pythonImportsCheck = [ + "pyRdfa" + ]; meta = with lib; { description = "RDFa 1.1 distiller/parser library"; - homepage = "https://www.w3.org/2012/pyRdfa/"; + homepage = "https://github.com/prrvchr/pyrdfa3/"; + changelog = "https://github.com/prrvchr/pyrdfa3/releases/tag/v${version}"; license = licenses.w3c; maintainers = with maintainers; [ ambroisie ]; }; diff --git a/pkgs/development/python-modules/pyrfc3339/default.nix b/pkgs/development/python-modules/pyrfc3339/default.nix index 9345b819f75cc..368f3cda24de7 100644 --- a/pkgs/development/python-modules/pyrfc3339/default.nix +++ b/pkgs/development/python-modules/pyrfc3339/default.nix @@ -14,12 +14,13 @@ }: buildPythonPackage rec { - pname = "pyRFC3339"; + pname = "pyrfc3339"; version = "1.1"; pyproject = true; src = fetchPypi { - inherit pname version; + pname = "pyRFC3339"; + inherit version; sha256 = "06jv7ar7lpvvk0dixzwdr3wgm0g1lipxs429s2z7knwwa7hwpf41"; }; diff --git a/pkgs/development/python-modules/pysdl2/default.nix b/pkgs/development/python-modules/pysdl2/default.nix index 64b9b97d4a35e..4903dbbbc2417 100644 --- a/pkgs/development/python-modules/pysdl2/default.nix +++ b/pkgs/development/python-modules/pysdl2/default.nix @@ -2,7 +2,7 @@ buildPythonPackage rec { pname = "PySDL2"; - version = "0.9.15"; + version = "0.9.16"; # The tests use OpenGL using find_library, which would have to be # patched; also they seem to actually open X windows and test stuff @@ -13,7 +13,7 @@ buildPythonPackage rec { src = fetchPypi { inherit pname version; - hash = "sha256-kIp946iMKyKiwhppkXxTIVKJW9GkkFJ6Jw7hTK1A5kc="; + hash = "sha256-ECdAa62+zdMP5W6AClp2rX1ycaOuwLes94DuJqAPLUA="; }; # Deliberately not in propagated build inputs; users can decide diff --git a/pkgs/development/python-modules/pysigma-backend-elasticsearch/default.nix b/pkgs/development/python-modules/pysigma-backend-elasticsearch/default.nix index e6b55788735a5..a66a8cafce2ba 100644 --- a/pkgs/development/python-modules/pysigma-backend-elasticsearch/default.nix +++ b/pkgs/development/python-modules/pysigma-backend-elasticsearch/default.nix @@ -10,8 +10,8 @@ buildPythonPackage rec { pname = "pysigma-backend-elasticsearch"; - version = "1.0.9"; - format = "pyproject"; + version = "1.0.10"; + pyproject = true; disabled = pythonOlder "3.8"; @@ -19,7 +19,7 @@ buildPythonPackage rec { owner = "SigmaHQ"; repo = "pySigma-backend-elasticsearch"; rev = "refs/tags/v${version}"; - hash = "sha256-OZaUKEEvgEIukEcAHB9ci/XWCU+h1CvQTU3gwWBOBkY="; + hash = "sha256-oH+47J/7zpJDOAVQ27qIOFtlYfNlzIP6OSp7ogrmdpY="; }; postPatch = '' diff --git a/pkgs/development/python-modules/pysnmp-lextudio/default.nix b/pkgs/development/python-modules/pysnmp-lextudio/default.nix new file mode 100644 index 0000000000000..4e7d123d49cbb --- /dev/null +++ b/pkgs/development/python-modules/pysnmp-lextudio/default.nix @@ -0,0 +1,71 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub + +# build-system +, poetry-core + +# dependencies +, pyasn1 +, pyasyncore +, pysmi-lextudio +, pysnmpcrypto + +# tests +, pytestCheckHook +, pytest-asyncio +}: + +buildPythonPackage rec { + pname = "pysnmp-lextudio"; + version = "5.0.33"; + pyproject = true; + + src = fetchFromGitHub { + owner = "lextudio"; + repo = "pysnmp"; + rev = "v${version}"; + hash = "sha256-IXYpR7JnuHmcjtdCs1C+rPHS9IZ93MN/Zuw4Pu1l/4A="; + }; + + nativeBuildInputs = [ + poetry-core + ]; + + propagatedBuildInputs = [ + pyasn1 + pyasyncore + pysmi-lextudio + pysnmpcrypto + ]; + + nativeCheckInputs = [ + pytestCheckHook + pytest-asyncio + ]; + + disabledTests = [ + # Temporary failure in name resolutionc + "test_custom_asn1_mib_search_path" + "test_send_notification" + "test_send_trap" + "test_send_v3_inform_notification" + "test_usm_sha_aes128" + "test_v1_get" + "test_v1_next" + "test_v1_set" + "test_v2c_bulk" + ]; + + pythonImportsCheck = [ + "pysnmp" + ]; + + meta = with lib; { + description = "Python SNMP library"; + homepage = "https://github.com/lextudio/pysnmp"; + changelog = "https://github.com/lextudio/pysnmp/blob/${src.rev}/CHANGES.txt"; + license = licenses.bsd2; + maintainers = with maintainers; [ hexa ]; + }; +} diff --git a/pkgs/development/python-modules/pysnmpcrypto/default.nix b/pkgs/development/python-modules/pysnmpcrypto/default.nix new file mode 100644 index 0000000000000..ffeb9dddfbd8b --- /dev/null +++ b/pkgs/development/python-modules/pysnmpcrypto/default.nix @@ -0,0 +1,57 @@ +{ lib +, buildPythonPackage +, fetchPypi + +# build-system +, setuptools + +# dependencies +, cryptography +, pycryptodomex + +# tests +, pytestCheckHook +}: + +buildPythonPackage rec { + pname = "pysnmpcrypto"; + version = "0.0.4"; + pyproject = true; + + src = fetchPypi { + inherit pname version; + hash = "sha256-tjX7Ox7GY3uaADP1BQYhThbrhFdLHSWrAnu95MqlUSk="; + }; + + postPatch = '' + # ValueError: invalid literal for int() with base 10: 'post0' in File "<string>", line 104, in <listcomp> + substituteInPlace setup.py --replace \ + "observed_version = [int(x) for x in setuptools.__version__.split('.')]" \ + "observed_version = [36, 2, 0]" + ''; + + nativeBuildInputs = [ + setuptools + ]; + + propagatedBuildInputs = [ + cryptography + pycryptodomex + ]; + + nativeCheckInputs = [ + pytestCheckHook + ]; + + pythonImportsCheck = [ + "pysnmpcrypto" + ]; + + meta = with lib; { + description = "Strong crypto support for Python SNMP library"; + homepage = "https://github.com/etingof/pysnmpcrypto"; + changelog = "https://github.com/etingof/pysnmpcrypto/blob/${version}/CHANGES.txt"; + license = licenses.bsd2; + maintainers = with maintainers; [ ]; + }; +} diff --git a/pkgs/development/python-modules/pysnmplib/default.nix b/pkgs/development/python-modules/pysnmplib/default.nix index 587bb4762716b..abcbe70562dea 100644 --- a/pkgs/development/python-modules/pysnmplib/default.nix +++ b/pkgs/development/python-modules/pysnmplib/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "pysnmplib"; - version = "5.0.23"; + version = "5.0.24"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -19,7 +19,7 @@ buildPythonPackage rec { owner = "pysnmp"; repo = "pysnmp"; rev = "refs/tags/v${version}"; - hash = "sha256-1h87fqaWMJN25SOD0xOkP3PFm1GPK99sT0o6ILCFVUI="; + hash = "sha256-AtQqXiy943cYhHDsyz9Yk5uA4xK7Q4p21CT3X3zYzrQ="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/pysolcast/default.nix b/pkgs/development/python-modules/pysolcast/default.nix index 5e740e78e6a87..1eab58761440b 100644 --- a/pkgs/development/python-modules/pysolcast/default.nix +++ b/pkgs/development/python-modules/pysolcast/default.nix @@ -9,6 +9,7 @@ , requests , responses , poetry-core +, pythonRelaxDepsHook }: buildPythonPackage rec { @@ -25,8 +26,13 @@ buildPythonPackage rec { hash = "sha256-jLhM47o6LvkPux0kusOrRk4TDS6VLWE0QMEiQxlBCwo="; }; + pythonRelaxDeps = [ + "responses" + ]; + nativeBuildInputs = [ poetry-core + pythonRelaxDepsHook ]; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pyspellchecker/default.nix b/pkgs/development/python-modules/pyspellchecker/default.nix index 0a8b0162ad746..ee8d980c1bb02 100644 --- a/pkgs/development/python-modules/pyspellchecker/default.nix +++ b/pkgs/development/python-modules/pyspellchecker/default.nix @@ -7,14 +7,14 @@ buildPythonPackage rec { pname = "pyspellchecker"; - version = "0.7.3"; + version = "0.8.1"; format = "pyproject"; src = fetchFromGitHub { owner = "barrust"; repo = "pyspellchecker"; rev = "refs/tags/v${version}"; - hash = "sha256-DUFJGO0Ncobr36k0hQRgeHf77Mds53JJHOMlf4/zfAI="; + hash = "sha256-8IwTMj/RqMc9UqhzyvmrirPGuMEwj3iMr+FmF+8312U="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/pyswitchbot/default.nix b/pkgs/development/python-modules/pyswitchbot/default.nix index 7f831e1d8e47f..3ee728d7ef115 100644 --- a/pkgs/development/python-modules/pyswitchbot/default.nix +++ b/pkgs/development/python-modules/pyswitchbot/default.nix @@ -14,7 +14,7 @@ buildPythonPackage rec { pname = "pyswitchbot"; - version = "0.44.0"; + version = "0.44.1"; pyproject = true; disabled = pythonOlder "3.7"; @@ -23,7 +23,7 @@ buildPythonPackage rec { owner = "Danielhiversen"; repo = "pySwitchbot"; rev = "refs/tags/${version}"; - hash = "sha256-8F0mcZuGU3CiB3pGbAVReKAjvqFLMNa3EHLOOVujgAo="; + hash = "sha256-i3OQ2QOBMaiNTyq44wbnHZ2iqAXEYB16NWKWzOza1Jo="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/pytado/default.nix b/pkgs/development/python-modules/pytado/default.nix index 5962364b76773..f6c26a60b338a 100644 --- a/pkgs/development/python-modules/pytado/default.nix +++ b/pkgs/development/python-modules/pytado/default.nix @@ -4,12 +4,13 @@ , pytestCheckHook , requests , pythonOlder +, setuptools }: buildPythonPackage rec { pname = "pytado"; - version = "0.17.3"; - format = "setuptools"; + version = "0.17.4"; + pyproject = true; disabled = pythonOlder "3.7"; @@ -17,9 +18,13 @@ buildPythonPackage rec { owner = "wmalgadey"; repo = "PyTado"; rev = "refs/tags/${version}"; - sha256 = "sha256-whpNYiAb2cqKI4m0HJN2lPt51FLuEzrkrRTSWs6uznU="; + hash = "sha256-Wdd9HdsQjaYlL8knhMuO87+dom+aTsmrLRK0UdrpsbQ="; }; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ requests ]; diff --git a/pkgs/development/python-modules/pytedee-async/default.nix b/pkgs/development/python-modules/pytedee-async/default.nix index a03ad55f29d64..f4ce2c7bcd896 100644 --- a/pkgs/development/python-modules/pytedee-async/default.nix +++ b/pkgs/development/python-modules/pytedee-async/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "pytedee-async"; - version = "0.2.10"; + version = "0.2.13"; pyproject = true; disabled = pythonOlder "3.9"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "zweckj"; repo = "pytedee_async"; rev = "refs/tags/v${version}"; - hash = "sha256-dOoADOSDb4FDJNhPgUpD/GTBj5IR33qKtjJZoiMmk6E="; + hash = "sha256-3W+eqkniDMoDKeute5w1QyklOc/aren/Q8txBEI/4ys="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/pytensor/default.nix b/pkgs/development/python-modules/pytensor/default.nix index d61cf6de4efc1..e8e8056ab811c 100644 --- a/pkgs/development/python-modules/pytensor/default.nix +++ b/pkgs/development/python-modules/pytensor/default.nix @@ -24,7 +24,7 @@ buildPythonPackage rec { pname = "pytensor"; - version = "2.18.5"; + version = "2.18.6"; pyproject = true; disabled = pythonOlder "3.9"; @@ -33,7 +33,7 @@ buildPythonPackage rec { owner = "pymc-devs"; repo = "pytensor"; rev = "refs/tags/rel-${version}"; - hash = "sha256-0xwzFmYsec7uQaq6a4BAA6MYy2zIVZ0cTwodVJQ6yMs="; + hash = "sha256-SMh4wVZwmc87ztFn2OOI234VP3JzmxVMBkn7lYwVu6M="; }; postPatch = '' diff --git a/pkgs/development/python-modules/pytest-ansible/default.nix b/pkgs/development/python-modules/pytest-ansible/default.nix index 1a83d0ed064f2..b73ae05a8cce4 100644 --- a/pkgs/development/python-modules/pytest-ansible/default.nix +++ b/pkgs/development/python-modules/pytest-ansible/default.nix @@ -1,29 +1,30 @@ { lib , stdenv +, ansible-compat , ansible-core , buildPythonPackage , coreutils , fetchFromGitHub +, packaging , pytest , pytestCheckHook , pythonOlder , setuptools , setuptools-scm -, wheel }: buildPythonPackage rec { pname = "pytest-ansible"; - version = "4.1.1"; - format = "pyproject"; + version = "24.1.2"; + pyproject = true; - disabled = pythonOlder "3.9"; + disabled = pythonOlder "3.10"; src = fetchFromGitHub { owner = "ansible"; repo = "pytest-ansible"; rev = "refs/tags/v${version}"; - hash = "sha256-51DQ+NwD454XaYLuRxriuWRZ8uTSX3ZpadXdxs7FspQ="; + hash = "sha256-NtGk+azpSZZm9PUf6Q1Qipo/zaUH+bed7k3oFnQyKjw="; }; postPatch = '' @@ -34,7 +35,6 @@ buildPythonPackage rec { nativeBuildInputs = [ setuptools setuptools-scm - wheel ]; buildInputs = [ @@ -43,6 +43,8 @@ buildPythonPackage rec { propagatedBuildInputs = [ ansible-core + ansible-compat + packaging ]; nativeCheckInputs = [ @@ -77,6 +79,9 @@ buildPythonPackage rec { # These tests fail in the Darwin sandbox "tests/test_adhoc.py" "tests/test_adhoc_result.py" + ] ++ lib.optionals (lib.versionAtLeast ansible-core.version "2.16") [ + # Test fail in the NixOS environment + "tests/test_adhoc.py" ]; pythonImportsCheck = [ diff --git a/pkgs/development/python-modules/pytest-cases/default.nix b/pkgs/development/python-modules/pytest-cases/default.nix index bbc67a2788559..1942a362a176a 100644 --- a/pkgs/development/python-modules/pytest-cases/default.nix +++ b/pkgs/development/python-modules/pytest-cases/default.nix @@ -10,14 +10,14 @@ buildPythonPackage rec { pname = "pytest-cases"; - version = "3.8.1"; + version = "3.8.2"; pyproject = true; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - hash = "sha256-Sdf2+K1TTlpuc/uPX9OJhmBvF7Ru5V9+vuB6VcZ3ygE="; + hash = "sha256-JM7AEoyCL1G19AL6zgnnBJlU2WddsspnX84e9/j3Seg="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/pytest-check/default.nix b/pkgs/development/python-modules/pytest-check/default.nix index ed62f69d4818f..efa2cc4049bc1 100644 --- a/pkgs/development/python-modules/pytest-check/default.nix +++ b/pkgs/development/python-modules/pytest-check/default.nix @@ -8,20 +8,20 @@ buildPythonPackage rec { pname = "pytest-check"; - version = "2.2.4"; - format = "pyproject"; + version = "2.3.1"; + pyproject = true; src = fetchPypi { pname = "pytest_check"; inherit version; - hash = "sha256-0uaWYDFB9bLekFuTWD5FmE7DxhzscCZJ3rEL2XSFYLs="; + hash = "sha256-UbjxiozKpCbF2RPE4ORvAUqqdXlIHqA9Itfh9Jj2ibI="; }; nativeBuildInputs = [ flit-core ]; - propagatedBuildInputs = [ + buildInputs = [ pytest ]; @@ -29,10 +29,15 @@ buildPythonPackage rec { pytestCheckHook ]; + pythonImportsCheck = [ + "pytest_check" + ]; + meta = with lib; { description = "pytest plugin allowing multiple failures per test"; homepage = "https://github.com/okken/pytest-check"; + changelog = "https://github.com/okken/pytest-check/releases/tag/${version}"; license = licenses.mit; - maintainers = [ maintainers.flokli ]; + maintainers = with maintainers; [ flokli ]; }; } diff --git a/pkgs/development/python-modules/pytest-django/default.nix b/pkgs/development/python-modules/pytest-django/default.nix index a9c8743badf85..531ad08dec464 100644 --- a/pkgs/development/python-modules/pytest-django/default.nix +++ b/pkgs/development/python-modules/pytest-django/default.nix @@ -7,7 +7,6 @@ , django-configurations , pytest , pytestCheckHook -, pytest-xdist }: buildPythonPackage rec { pname = "pytest-django"; @@ -35,7 +34,6 @@ buildPythonPackage rec { nativeCheckInputs = [ django-configurations pytestCheckHook - pytest-xdist ]; preCheck = '' @@ -51,6 +49,8 @@ buildPythonPackage rec { "test_settings_restored" ]; + __darwinAllowLocalNetworking = true; + meta = with lib; { description = "py.test plugin for testing of Django applications"; homepage = "https://pytest-django.readthedocs.org/en/latest/"; diff --git a/pkgs/development/python-modules/pytest-playwright/default.nix b/pkgs/development/python-modules/pytest-playwright/default.nix index ff4cde9c73e5b..df1045a199552 100644 --- a/pkgs/development/python-modules/pytest-playwright/default.nix +++ b/pkgs/development/python-modules/pytest-playwright/default.nix @@ -14,7 +14,7 @@ buildPythonPackage rec { pname = "pytest-playwright"; - version = "0.4.3"; + version = "0.4.4"; format = "setuptools"; disabled = pythonOlder "3.8"; @@ -23,7 +23,7 @@ buildPythonPackage rec { owner = "microsoft"; repo = "playwright-pytest"; rev = "refs/tags/v${version}"; - hash = "sha256-5qjfZGDM1OqXXNyj81O49ClKKGiAPdgyZZu6TgpskGs="; + hash = "sha256-jCK2i27wRGsv65zfzW+Ef72HNQd4Qu/Mw3HX66ZMQ9Y="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/pytest-random-order/default.nix b/pkgs/development/python-modules/pytest-random-order/default.nix index 5218f0a778e52..2b2b6624c0998 100644 --- a/pkgs/development/python-modules/pytest-random-order/default.nix +++ b/pkgs/development/python-modules/pytest-random-order/default.nix @@ -1,28 +1,49 @@ { lib , buildPythonPackage , fetchPypi -, pythonOlder +, py , pytest +, pytest-xdist +, pytestCheckHook +, pythonOlder +, setuptools }: buildPythonPackage rec { - version = "1.1.0"; - format = "setuptools"; pname = "pytest-random-order"; + version = "1.1.1"; + pyproject = true; + + disabled = pythonOlder "3.5"; src = fetchPypi { inherit pname version; - hash = "sha256-2+beu5NTp6+YTMnt2+s1d91Nu8wVKaeePSH2jtm0VgU="; + hash = "sha256-RHLX008fHF86NZxP/FwT7QZSMvMeyhnIhEwatAbnkIA="; }; - disabled = pythonOlder "3.5"; + nativeBuildInputs = [ + setuptools + ]; + + buildInputs = [ + pytest + ]; + + nativeCheckInputs = [ + py + pytest-xdist + pytestCheckHook + ]; - buildInputs = [ pytest ]; + pythonImportsCheck = [ + "random_order" + ]; meta = with lib; { homepage = "https://github.com/jbasko/pytest-random-order"; description = "Randomise the order of tests with some control over the randomness"; + changelog = "https://github.com/jbasko/pytest-random-order/releases/tag/v${version}"; license = licenses.mit; - maintainers = [ maintainers.prusnak ]; + maintainers = with maintainers; [ prusnak ]; }; } diff --git a/pkgs/development/python-modules/python-arango/default.nix b/pkgs/development/python-modules/python-arango/default.nix index d21408c2c6781..09218269828a1 100644 --- a/pkgs/development/python-modules/python-arango/default.nix +++ b/pkgs/development/python-modules/python-arango/default.nix @@ -32,7 +32,7 @@ in buildPythonPackage rec { pname = "python-arango"; - version = "7.8.1"; + version = "7.9.1"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -41,7 +41,7 @@ buildPythonPackage rec { owner = "ArangoDB-Community"; repo = "python-arango"; rev = "refs/tags/${version}"; - hash = "sha256-R/59SMEVPZow9aG32gqQApuvB2zQLmPCxf/Mz70ubUU="; + hash = "sha256-N10ysJKk0jxFyjgR/MXKHVS2MxCQtfFFGEh1IZ2eJk0="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/python-benedict/default.nix b/pkgs/development/python-modules/python-benedict/default.nix index 65a27c9b53cfa..9b6ffe4e0fe89 100644 --- a/pkgs/development/python-modules/python-benedict/default.nix +++ b/pkgs/development/python-modules/python-benedict/default.nix @@ -7,6 +7,7 @@ , openpyxl , orjson , phonenumbers +, beautifulsoup4 , pytestCheckHook , python-dateutil , python-decouple @@ -16,7 +17,7 @@ , pythonRelaxDepsHook , pyyaml , requests -, six +, setuptools , toml , xlrd , xmltodict @@ -24,52 +25,94 @@ buildPythonPackage rec { pname = "python-benedict"; - version = "0.33.0"; - format = "setuptools"; + version = "0.33.1"; + pyproject = true; disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "fabiocaccamo"; - repo = pname; + repo = "python-benedict"; rev = "refs/tags/${version}"; - hash = "sha256-SJBU7jMnyLBdWQPQ/UGbVklKUOrCM3fMnOkXKHQnyPI="; + hash = "sha256-QRWyMqHW4C3+718mgp9z/dQ1loesm0Vaf2TzW3yqF3A="; }; - nativeBuildInputs = [ - pythonRelaxDepsHook - ]; - pythonRelaxDeps = [ "boto3" ]; + nativeBuildInputs = [ + pythonRelaxDepsHook + setuptools + ]; + propagatedBuildInputs = [ - boto3 - ftfy - mailchecker - openpyxl - phonenumbers - python-dateutil python-fsutil python-slugify - pyyaml requests - toml - xlrd - xmltodict ]; + passthru.optional-dependencies = { + all = [ + beautifulsoup4 + boto3 + ftfy + mailchecker + openpyxl + phonenumbers + python-dateutil + pyyaml + toml + xlrd + xmltodict + ]; + html = [ + beautifulsoup4 + xmltodict + ]; + io = [ + beautifulsoup4 + openpyxl + pyyaml + toml + xlrd + xmltodict + ]; + parse = [ + ftfy + mailchecker + phonenumbers + python-dateutil + ]; + s3 = [ + boto3 + ]; + toml = [ + toml + ]; + xls = [ + openpyxl + xlrd + ]; + xml = [ + xmltodict + ]; + yaml = [ + pyyaml + ]; + }; + nativeCheckInputs = [ orjson pytestCheckHook python-decouple - six - ]; + ] ++ lib.flatten (builtins.attrValues passthru.optional-dependencies); disabledTests = [ # Tests require network access "test_from_base64_with_valid_url_valid_content" + "test_from_html_with_valid_file_valid_content" + "test_from_html_with_valid_url_valid_content" "test_from_json_with_valid_url_valid_content" "test_from_pickle_with_valid_url_valid_content" "test_from_plist_with_valid_url_valid_content" diff --git a/pkgs/development/python-modules/python-bsblan/default.nix b/pkgs/development/python-modules/python-bsblan/default.nix index bfa3f38e4597c..01d9704c0399d 100644 --- a/pkgs/development/python-modules/python-bsblan/default.nix +++ b/pkgs/development/python-modules/python-bsblan/default.nix @@ -16,7 +16,7 @@ buildPythonPackage rec { pname = "python-bsblan"; - version = "0.5.16"; + version = "0.5.18"; format = "pyproject"; disabled = pythonOlder "3.9"; @@ -25,7 +25,7 @@ buildPythonPackage rec { owner = "liudger"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-m80lnNd1ANddV0d/w3S7+QWzIPRklDZsWMO2g1hgEoQ="; + hash = "sha256-SJUIJhsVn4LZiUx9h3Q2uWoeaQiKoIRrijTfPgCHnAA="; }; postPatch = '' diff --git a/pkgs/development/python-modules/python-creole/default.nix b/pkgs/development/python-modules/python-creole/default.nix index 52d13d452affc..7f27466fa2be5 100644 --- a/pkgs/development/python-modules/python-creole/default.nix +++ b/pkgs/development/python-modules/python-creole/default.nix @@ -12,7 +12,7 @@ # tests , pytestCheckHook -, readme_renderer +, readme-renderer , textile }: @@ -58,7 +58,7 @@ buildPythonPackage rec { nativeCheckInputs = [ pytestCheckHook - readme_renderer + readme-renderer textile ]; diff --git a/pkgs/development/python-modules/python-crontab/default.nix b/pkgs/development/python-modules/python-crontab/default.nix index a1fb349c9ee95..8af332aa316b7 100644 --- a/pkgs/development/python-modules/python-crontab/default.nix +++ b/pkgs/development/python-modules/python-crontab/default.nix @@ -35,8 +35,9 @@ buildPythonPackage rec { "test_07_non_posix_shell" # doctest that assumes /tmp is writeable, awkward to patch "test_03_usage" - # AssertionError: 4 != 0 + # Test is assuming $CURRENT_YEAR is not a leap year "test_19_frequency_at_month" + "test_20_frequency_at_year" ]; pythonImportsCheck = [ diff --git a/pkgs/development/python-modules/python-docs-theme/default.nix b/pkgs/development/python-modules/python-docs-theme/default.nix index 464697c35bfa7..270df8b2accf5 100644 --- a/pkgs/development/python-modules/python-docs-theme/default.nix +++ b/pkgs/development/python-modules/python-docs-theme/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "python-docs-theme"; - version = "2023.9"; + version = "2024.1"; pyproject = true; disabled = pythonOlder "3.8"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "python"; repo = "python-docs-theme"; rev = "refs/tags/${version}"; - hash = "sha256-XVwMEfprTNdNnaW38HMCAu4CswdVjBXYtNWBgqXfbno="; + hash = "sha256-nU8KQu89/xWvR6xoIOKsGrOqDjFhA3TgHROHfbAqCRU="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/python-frontmatter/default.nix b/pkgs/development/python-modules/python-frontmatter/default.nix index c359d4ee87f7c..eab892f492835 100644 --- a/pkgs/development/python-modules/python-frontmatter/default.nix +++ b/pkgs/development/python-modules/python-frontmatter/default.nix @@ -2,14 +2,14 @@ buildPythonPackage rec { pname = "python-frontmatter"; - version = "1.0.1"; + version = "1.1.0"; format = "setuptools"; src = fetchFromGitHub { owner = "eyeseast"; repo = pname; rev = "refs/tags/v${version}"; - sha256 = "sha256-lkBCKZ1fZF580+4TnHYkfaGJjsWk7/Ksnk7VagZuef8="; + sha256 = "sha256-Sr0RbNVk87Zu01U7nkuPUSnl1bm6G72EZDP/eDn099s="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/python-fsutil/default.nix b/pkgs/development/python-modules/python-fsutil/default.nix index 0e362ea35f187..5a347071f6201 100644 --- a/pkgs/development/python-modules/python-fsutil/default.nix +++ b/pkgs/development/python-modules/python-fsutil/default.nix @@ -4,22 +4,27 @@ , pytestCheckHook , pythonOlder , requests +, setuptools }: buildPythonPackage rec { pname = "python-fsutil"; - version = "0.13.0"; - format = "setuptools"; + version = "0.13.1"; + pyproject = true; disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "fabiocaccamo"; - repo = pname; + repo = "python-fsutil"; rev = "refs/tags/${version}"; - hash = "sha256-RbpbFd+GqFPl88FqKvYEE6HcwFRzPDUTs3vMYM6x7es="; + hash = "sha256-yY8hhw6uNKqrcj0geoQeGN/JCDJVja7pCPUHwoViL64="; }; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ requests ]; diff --git a/pkgs/development/python-modules/python-gitlab/default.nix b/pkgs/development/python-modules/python-gitlab/default.nix index 9c708b735ce28..6931a0d4ee45e 100644 --- a/pkgs/development/python-modules/python-gitlab/default.nix +++ b/pkgs/development/python-modules/python-gitlab/default.nix @@ -15,14 +15,14 @@ buildPythonPackage rec { pname = "python-gitlab"; - version = "4.2.0"; + version = "4.4.0"; pyproject = true; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-+HDXb5jJXQXEM5nXOx6qtZxnGzJ5ODDNL53fMsyTVB4="; + hash = "sha256-HRF797QzroJV5ddOcsZgl49Q7oXrYiSMn7Uu9Dw+OBQ="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/python-gvm/default.nix b/pkgs/development/python-modules/python-gvm/default.nix index 8f4292d6bc3ef..4a455fa79800b 100644 --- a/pkgs/development/python-modules/python-gvm/default.nix +++ b/pkgs/development/python-modules/python-gvm/default.nix @@ -13,16 +13,16 @@ buildPythonPackage rec { pname = "python-gvm"; - version = "23.12.0"; - format = "pyproject"; + version = "24.1.0"; + pyproject = true; - disabled = pythonOlder "3.7"; + disabled = pythonOlder "3.9"; src = fetchFromGitHub { owner = "greenbone"; - repo = pname; + repo = "python-gvm"; rev = "refs/tags/v${version}"; - hash = "sha256-rqaiygGdZMyZwHaNhmmbP3eRKpO8yT9hgFsz+azHzaM="; + hash = "sha256-1MJajawm/QdioZM+/efnXOAFcuDOk/xJ1acPrxKp700="; }; nativeBuildInputs = [ @@ -33,16 +33,17 @@ buildPythonPackage rec { defusedxml lxml paramiko - pontos ]; nativeCheckInputs = [ + pontos pytestCheckHook ]; disabledTests = [ # No running SSH available "test_connect_error" + "test_feed_xml_error" ] ++ lib.optionals stdenv.isDarwin [ "test_feed_xml_error" ]; diff --git a/pkgs/development/python-modules/python-homewizard-energy/default.nix b/pkgs/development/python-modules/python-homewizard-energy/default.nix index ca6c2770db468..7ecd509f9b5d6 100644 --- a/pkgs/development/python-modules/python-homewizard-energy/default.nix +++ b/pkgs/development/python-modules/python-homewizard-energy/default.nix @@ -13,8 +13,8 @@ buildPythonPackage rec { pname = "python-homewizard-energy"; - version = "4.1.1"; - format = "pyproject"; + version = "4.2.2"; + pyproject = true; disabled = pythonOlder "3.9"; @@ -22,12 +22,12 @@ buildPythonPackage rec { owner = "DCSBL"; repo = "python-homewizard-energy"; rev = "refs/tags/v${version}"; - hash = "sha256-p7uwodjC+wTGrlKf4i4ZRTPg9Qh9krsmwPpWNdF6J4U="; + hash = "sha256-CNSZBH+D74Y71k7Ws0OlgN1/i/lWXlkz6MC3IXL5ycQ="; }; postPatch = '' substituteInPlace pyproject.toml \ - --replace 'version = "0.0.0"' 'version = "${version}"' + --replace-fail 'version = "0.0.0"' 'version = "${version}"' ''; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/python-kasa/default.nix b/pkgs/development/python-modules/python-kasa/default.nix index dd2b641737943..2c5262a47ec10 100644 --- a/pkgs/development/python-modules/python-kasa/default.nix +++ b/pkgs/development/python-modules/python-kasa/default.nix @@ -1,8 +1,10 @@ { lib +, aiohttp , anyio , async-timeout , asyncclick , buildPythonPackage +, cryptography , fetchFromGitHub , kasa-crypt , orjson @@ -17,16 +19,16 @@ buildPythonPackage rec { pname = "python-kasa"; - version = "0.5.4"; - format = "pyproject"; + version = "0.6.2.1"; + pyproject = true; disabled = pythonOlder "3.8"; src = fetchFromGitHub { - owner = pname; - repo = pname; + owner = "python-kasa"; + repo = "python-kasa"; rev = "refs/tags/${version}"; - hash = "sha256-wGPMrYaTtKkkNW88eyiiciFcBSTRqqChYi6e15WUCHo="; + hash = "sha256-iCqJY3qkA3ZVXTCfxvQoaZsaqGui8PwKGAmLXKZgLJs="; }; nativeBuildInputs = [ @@ -34,9 +36,11 @@ buildPythonPackage rec { ]; propagatedBuildInputs = [ + aiohttp anyio async-timeout asyncclick + cryptography pydantic ]; @@ -48,7 +52,7 @@ buildPythonPackage rec { ]; passthru.optional-dependencies = { - speedup = [ + speedups = [ kasa-crypt orjson ]; diff --git a/pkgs/development/python-modules/python-keystoneclient/default.nix b/pkgs/development/python-modules/python-keystoneclient/default.nix index bfcb750197bcc..74ef6316e23c5 100644 --- a/pkgs/development/python-modules/python-keystoneclient/default.nix +++ b/pkgs/development/python-modules/python-keystoneclient/default.nix @@ -15,14 +15,14 @@ buildPythonPackage rec { pname = "python-keystoneclient"; - version = "5.2.0"; + version = "5.3.0"; format = "setuptools"; disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; - hash = "sha256-cqQsOGniEouwxiashWw9vz447xbX6F3TVWe4LNJFOak="; + hash = "sha256-vF53GfQVZCXex311w6eZGOPQtRk3ihbY1++ohJ5MKnk="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/python-lsp-server/default.nix b/pkgs/development/python-modules/python-lsp-server/default.nix index 96ba4c3670333..9d5630a22360f 100644 --- a/pkgs/development/python-modules/python-lsp-server/default.nix +++ b/pkgs/development/python-modules/python-lsp-server/default.nix @@ -35,7 +35,7 @@ buildPythonPackage rec { pname = "python-lsp-server"; - version = "1.9.0"; + version = "1.10.0"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -44,7 +44,7 @@ buildPythonPackage rec { owner = "python-lsp"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-9za0et/W+AwrjqUVoHwk8oqLXk4eqgRON8Z4F5GSKXM="; + hash = "sha256-dh33m7wgOwUETjdNqqDKZnpTgbrYCg9/XXC296tHm4w="; }; postPatch = '' @@ -144,6 +144,7 @@ buildPythonPackage rec { # https://github.com/python-lsp/python-lsp-server/issues/243 "test_numpy_completions" "test_workspace_loads_pycodestyle_config" + "test_autoimport_code_actions_and_completions_for_notebook_document" ] ++ lib.optionals (stdenv.isDarwin && stdenv.isAarch64) [ # pyqt5 is broken on aarch64-darwin "test_pyqt_completion" diff --git a/pkgs/development/python-modules/python-lzo/default.nix b/pkgs/development/python-modules/python-lzo/default.nix index e3f1b0922a6a4..f0652410828c9 100644 --- a/pkgs/development/python-modules/python-lzo/default.nix +++ b/pkgs/development/python-modules/python-lzo/default.nix @@ -1,32 +1,50 @@ -{ lib, fetchPypi, buildPythonPackage, lzo, pytestCheckHook, setuptools, wheel }: +{ lib +, buildPythonPackage +, fetchFromGitHub +, lzo +, pytestCheckHook +, pythonOlder +, setuptools +, wheel +}: buildPythonPackage rec { pname = "python-lzo"; - version = "1.15"; - format = "pyproject"; + version = "1.16"; + pyproject = true; - src = fetchPypi { - inherit pname version; - hash = "sha256-pXqqAMXDoFFd2fdCa6LPYBdn3BncAj2LmdShOwoye0k="; + disabled = pythonOlder "3.9"; + + src = fetchFromGitHub { + owner = "jd-boyd"; + repo = "python-lzo"; + rev = "refs/tags/v${version}"; + hash = "sha256-iXAvOCzHPvNERMkE5y4QTHi4ZieW1wrYWYScs7zyb2c="; }; + nativeBuildInputs = [ setuptools wheel ]; - buildInputs = [ lzo ]; + buildInputs = [ + lzo + ]; - nativeCheckInputs = [ pytestCheckHook ]; + nativeCheckInputs = [ + pytestCheckHook + ]; pythonImportsCheck = [ "lzo" ]; meta = with lib; { - homepage = "https://github.com/jd-boyd/python-lzo"; description = "Python bindings for the LZO data compression library"; + homepage = "https://github.com/jd-boyd/python-lzo"; + changelog = "https://github.com/jd-boyd/python-lzo/releases/tag/v${version}"; license = licenses.gpl2Only; - maintainers = [ maintainers.jbedo ]; + maintainers = with maintainers; [ jbedo ]; }; } diff --git a/pkgs/development/python-modules/python-memcached/default.nix b/pkgs/development/python-modules/python-memcached/default.nix index 27a9eed537bb2..e82b6b51643aa 100644 --- a/pkgs/development/python-modules/python-memcached/default.nix +++ b/pkgs/development/python-modules/python-memcached/default.nix @@ -1,25 +1,25 @@ { lib , buildPythonPackage , fetchFromGitHub -, six +, setuptools , mock , pytestCheckHook }: buildPythonPackage rec { pname = "python-memcached"; - version = "1.59"; - format = "setuptools"; + version = "1.61"; + pyproject = true; src = fetchFromGitHub { owner = "linsomniac"; repo = "python-memcached"; rev = version; - hash = "sha256-tHqkwNloPTXOrEGtuDLu1cTw4SKJ4auv8UUbqdNp698="; + hash = "sha256-7bUCVAmOJ6znVmTZg9AJokOuym07NHL12gZgQ2uhfNo="; }; - propagatedBuildInputs = [ - six + nativeBuildInputs = [ + setuptools ]; nativeCheckInputs = [ diff --git a/pkgs/development/python-modules/python-openstackclient/default.nix b/pkgs/development/python-modules/python-openstackclient/default.nix index 670fdaad51c8c..ef8c7cb59faef 100644 --- a/pkgs/development/python-modules/python-openstackclient/default.nix +++ b/pkgs/development/python-modules/python-openstackclient/default.nix @@ -16,12 +16,12 @@ buildPythonPackage rec { pname = "python-openstackclient"; - version = "6.3.0"; + version = "6.5.0"; format = "setuptools"; src = fetchPypi { inherit pname version; - hash = "sha256-m6C9+NAwh+WFtAqNzEKc673V/ewkwdYKECv58zEyDfE="; + hash = "sha256-EvwZNH9rGb/iw28Rx6GEH0FaLufxi5WUE8ISGZe4SVE="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/python_openzwave/cython.patch b/pkgs/development/python-modules/python-openzwave/cython.patch index e01ffdbdc0d06..e01ffdbdc0d06 100644 --- a/pkgs/development/python-modules/python_openzwave/cython.patch +++ b/pkgs/development/python-modules/python-openzwave/cython.patch diff --git a/pkgs/development/python-modules/python_openzwave/default.nix b/pkgs/development/python-modules/python-openzwave/default.nix index dbd9c3d8c469f..4611039e34d9a 100644 --- a/pkgs/development/python-modules/python_openzwave/default.nix +++ b/pkgs/development/python-modules/python-openzwave/default.nix @@ -4,14 +4,15 @@ , six, pydispatcher, urwid }: buildPythonPackage rec { - pname = "python_openzwave"; + pname = "python-openzwave"; version = "0.4.19"; format = "setuptools"; disabled = !isPy3k; src = fetchPypi { - inherit pname version; + pname = "python_openzwave"; + inherit version; sha256 = "6b40c7711383eeb3535cf5504f1cf47cc1ac7018eb820f299642a5a2795aef84"; extension = "zip"; }; diff --git a/pkgs/development/python-modules/python-roborock/default.nix b/pkgs/development/python-modules/python-roborock/default.nix index fe6d13423bc39..1346e9b35b7a2 100644 --- a/pkgs/development/python-modules/python-roborock/default.nix +++ b/pkgs/development/python-modules/python-roborock/default.nix @@ -19,7 +19,7 @@ buildPythonPackage rec { pname = "python-roborock"; - version = "0.39.0"; + version = "0.39.1"; pyproject = true; disabled = pythonOlder "3.10"; @@ -28,7 +28,7 @@ buildPythonPackage rec { owner = "humbertogontijo"; repo = "python-roborock"; rev = "refs/tags/v${version}"; - hash = "sha256-t+ZjLsnsLcWYNlx2eRxDhQLw3levdiCk4FUrcjtSmq8="; + hash = "sha256-iFLzrjbCwBuV9RQSHoP5LOG0PIPjiTMCpvk3wqGtMgk="; }; postPatch = '' diff --git a/pkgs/development/python-modules/python-songpal/default.nix b/pkgs/development/python-modules/python-songpal/default.nix index 3f73bf1e5a941..916288860fb5c 100644 --- a/pkgs/development/python-modules/python-songpal/default.nix +++ b/pkgs/development/python-modules/python-songpal/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "python-songpal"; - version = "0.16"; + version = "0.16.1"; format = "pyproject"; @@ -22,7 +22,7 @@ buildPythonPackage rec { owner = "rytilahti"; repo = "python-songpal"; rev = "refs/tags/release/${version}"; - hash = "sha256-wHyq63RG0lhzG33ssWyvzLjc7s1OqquXMN26N2MBHU8="; + hash = "sha256-qlypUGrObvn6YyzFhJe2rJvVdI6v+PkWLfjMpc1Lm2k="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/python-sql/default.nix b/pkgs/development/python-modules/python-sql/default.nix index 424c1635f91a3..2605080729c72 100644 --- a/pkgs/development/python-modules/python-sql/default.nix +++ b/pkgs/development/python-modules/python-sql/default.nix @@ -7,14 +7,14 @@ buildPythonPackage rec { pname = "python-sql"; - version = "1.4.2"; + version = "1.4.3"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-stuHXGcgwblayCyD6lLOu5RMQHvmii7wN8zdi6ucxTw="; + hash = "sha256-YmC+/4NaNdOgrsTx2jUbC+nKoaDZSmy6lAp82Nz2Ymk="; }; nativeCheckInputs = [ diff --git a/pkgs/development/python-modules/python-tado/default.nix b/pkgs/development/python-modules/python-tado/default.nix index 80687b9d3e1f5..60247f15d95bd 100644 --- a/pkgs/development/python-modules/python-tado/default.nix +++ b/pkgs/development/python-modules/python-tado/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "python-tado"; - version = "0.17.3"; + version = "0.17.4"; format = "setuptools"; disabled = pythonOlder "3.5"; @@ -16,9 +16,8 @@ buildPythonPackage rec { src = fetchFromGitHub { owner = "wmalgadey"; repo = "PyTado"; - # https://github.com/wmalgadey/PyTado/issues/62 rev = "refs/tags/${version}"; - hash = "sha256-whpNYiAb2cqKI4m0HJN2lPt51FLuEzrkrRTSWs6uznU="; + hash = "sha256-Wdd9HdsQjaYlL8knhMuO87+dom+aTsmrLRK0UdrpsbQ="; }; propagatedBuildInputs = [ @@ -30,9 +29,9 @@ buildPythonPackage rec { ]; meta = with lib; { - description = - "Python binding for Tado web API. Pythonize your central heating!"; + description = "Python binding for Tado web API. Pythonize your central heating!"; homepage = "https://github.com/wmalgadey/PyTado"; + changelog = "https://github.com/wmalgadey/PyTado/releases/tag/${version}"; license = licenses.gpl3Plus; maintainers = with maintainers; [ jamiemagee ]; }; diff --git a/pkgs/development/python-modules/python-trovo/default.nix b/pkgs/development/python-modules/python-trovo/default.nix index b4e7194b842ce..d76d5d4a2b97d 100644 --- a/pkgs/development/python-modules/python-trovo/default.nix +++ b/pkgs/development/python-modules/python-trovo/default.nix @@ -14,7 +14,8 @@ buildPythonPackage rec { disabled = pythonOlder "3.8"; src = fetchPypi { - inherit pname version; + pname = "python_trovo"; + inherit version; hash = "sha256-3EVSF4+nLvvM2RocNM2xz9Us5VrRRTCu/MWCcqwwikw="; }; diff --git a/pkgs/development/python-modules/pythran/default.nix b/pkgs/development/python-modules/pythran/default.nix index 047a4ea1af07e..3e62fa882cc9b 100644 --- a/pkgs/development/python-modules/pythran/default.nix +++ b/pkgs/development/python-modules/pythran/default.nix @@ -25,14 +25,14 @@ let in buildPythonPackage rec { pname = "pythran"; - version = "0.14.0"; + version = "0.15.0"; pyproject = true; src = fetchFromGitHub { owner = "serge-sans-paille"; repo = "pythran"; rev = version; - hash = "sha256-in0ty0aBAIx7Is13hjiHZGS8eKbhxb6TL3bENzfx5vQ="; + hash = "sha256-TpD8YZnnv48PKYrUqR0/qvJG1XRbcMBcrkcERh6Q4q0="; }; patches = [ @@ -41,17 +41,12 @@ in buildPythonPackage rec { src = ./0001-hardcode-path-to-libgomp.patch; gomp = "${if stdenv.cc.isClang then openmp else stdenv.cc.cc.lib}/lib/libgomp${stdenv.hostPlatform.extensions.sharedLibrary}"; }) - (fetchpatch { - # Python 3.12 support - url = "https://github.com/serge-sans-paille/pythran/commit/258ab9aaf26172f669eab1bf2a346b5f65db3ac0.patch"; - hash = "sha256-T+FLptDYIgzHBSXShULqHr/G8ttBFamq1M5JlB2HxDM="; - }) ]; # xsimd: unvendor this header-only C++ lib postPatch = '' - rm -r third_party/xsimd - ln -s '${lib.getDev xsimd}'/include/xsimd third_party/ + rm -r pythran/xsimd + ln -s '${lib.getDev xsimd}'/include/xsimd pythran/ ''; nativeBuildInputs = [ @@ -84,5 +79,6 @@ in buildPythonPackage rec { description = "Ahead of Time compiler for numeric kernels"; homepage = "https://github.com/serge-sans-paille/pythran"; license = lib.licenses.bsd3; + maintainers = with lib.maintainers; [ doronbehar ]; }; } diff --git a/pkgs/development/python-modules/pytoolconfig/default.nix b/pkgs/development/python-modules/pytoolconfig/default.nix index 012a470c1b5fc..1ba80dae80371 100644 --- a/pkgs/development/python-modules/pytoolconfig/default.nix +++ b/pkgs/development/python-modules/pytoolconfig/default.nix @@ -18,7 +18,7 @@ buildPythonPackage rec { pname = "pytoolconfig"; - version = "1.3.0"; + version = "1.3.1"; pyproject = true; disabled = pythonOlder "3.8"; @@ -27,7 +27,7 @@ buildPythonPackage rec { owner = "bagel897"; repo = "pytoolconfig"; rev = "refs/tags/v${version}"; - hash = "sha256-V7dANGnvhBhRy8IyO/gg73BMwpWRaV/xTF8JmRC7DPA="; + hash = "sha256-h21SDgVsnCDZQf5GS7sFE19L/p+OlAFZGEYKc0RHn30="; }; outputs = [ diff --git a/pkgs/development/python-modules/pytrafikverket/default.nix b/pkgs/development/python-modules/pytrafikverket/default.nix index 9a60920dd7b88..d880602a51238 100644 --- a/pkgs/development/python-modules/pytrafikverket/default.nix +++ b/pkgs/development/python-modules/pytrafikverket/default.nix @@ -9,14 +9,14 @@ buildPythonPackage rec { pname = "pytrafikverket"; - version = "0.3.9.2"; + version = "0.3.10"; pyproject = true; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-NxxuyLnzJ8T2jaQ761O943rpBbNwp/F4PygyQULkXzw="; + hash = "sha256-B3K9wDFj7uSgs6BsJUnD6r2JVcH7u7UrbVXUTMGqmQE="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/pyupgrade/default.nix b/pkgs/development/python-modules/pyupgrade/default.nix index 04e21f6e52ac8..8d5bc83ed165a 100644 --- a/pkgs/development/python-modules/pyupgrade/default.nix +++ b/pkgs/development/python-modules/pyupgrade/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "pyupgrade"; - version = "3.3.1"; + version = "3.15.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "asottile"; repo = pname; rev = "v${version}"; - hash = "sha256-vg1eNxIkdHM1MMTkCof/ED6nqFhwSgEiKjYmqAyHMp0="; + hash = "sha256-n6WlJc7Hh7SArJ8Z0fikxidtpXaPQvKTDGn6HukL2q8="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pyutil/default.nix b/pkgs/development/python-modules/pyutil/default.nix index 9b4023bc498d0..91f5d0d89f894 100644 --- a/pkgs/development/python-modules/pyutil/default.nix +++ b/pkgs/development/python-modules/pyutil/default.nix @@ -1,33 +1,66 @@ { lib , buildPythonPackage , fetchPypi -, simplejson +, isPyPy , mock +, pytestCheckHook +, pythonAtLeast +, pythonOlder +, setuptools +, simplejson , twisted -, isPyPy +, versioneer }: buildPythonPackage rec { pname = "pyutil"; version = "3.3.6"; - format = "setuptools"; + pyproject = true; + + disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; hash = "sha256-XcPWu5xbq6u10Ldz4JQEXXVxLos0ry0psOKGAmaCZ8A="; }; - propagatedBuildInputs = [ simplejson ]; - - nativeCheckInputs = [ mock twisted ]; - prePatch = lib.optionalString isPyPy '' grep -rl 'utf-8-with-signature-unix' ./ | xargs sed -i -e "s|utf-8-with-signature-unix|utf-8|g" ''; - meta = with lib; { - description = "Pyutil, a collection of mature utilities for Python programmers"; + nativeBuildInputs = [ + setuptools + versioneer + ]; + passthru.optional-dependencies = { + jsonutil = [ + simplejson + ]; + # Module not available + # randcookie = [ + # zbase32 + # ]; + }; + + nativeCheckInputs = [ + mock + twisted + pytestCheckHook + ] ++ lib.flatten (builtins.attrValues passthru.optional-dependencies); + + pythonImportsCheck = [ + "pyutil" + ]; + + disabledTests = lib.optionals (pythonAtLeast "3.12") [ + # https://github.com/tpltnt/pyutil/issues/10 + "test_decimal" + "test_float" + ]; + + meta = with lib; { + description = "Collection of mature utilities for Python programmers"; longDescription = '' These are a few data structures, classes and functions which we've needed over many years of Python programming and which @@ -37,7 +70,6 @@ buildPythonPackage rec { Python language or its standard library, thus showing that we're not alone in wanting tools like these. ''; - homepage = "https://github.com/tpltnt/pyutil"; license = licenses.gpl2Plus; maintainers = with maintainers; [ prusnak ]; diff --git a/pkgs/development/python-modules/pyvista/default.nix b/pkgs/development/python-modules/pyvista/default.nix index 0493509e976b2..f791db0dbd83d 100644 --- a/pkgs/development/python-modules/pyvista/default.nix +++ b/pkgs/development/python-modules/pyvista/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "pyvista"; - version = "0.43.1"; + version = "0.43.2"; format = "setuptools"; disabled = pythonOlder "3.8"; @@ -22,7 +22,7 @@ buildPythonPackage rec { owner = pname; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-H7WkRK9lP92L47nFNDT1WusWfU0bLgXBA+KQqTyedL4="; + hash = "sha256-2gh5qpiHda611bWWZzRXu+tkiRk9x4qNehFP8MARtk0="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pywebpush/default.nix b/pkgs/development/python-modules/pywebpush/default.nix index 501d0a56f783a..38d605317a601 100644 --- a/pkgs/development/python-modules/pywebpush/default.nix +++ b/pkgs/development/python-modules/pywebpush/default.nix @@ -14,12 +14,12 @@ buildPythonPackage rec { pname = "pywebpush"; - version = "1.14.0"; + version = "1.14.1"; format = "setuptools"; src = fetchPypi { inherit pname version; - hash = "sha256-bDbhZ5JoIZ5pO6lA2yvyVMJAygJmTeECtyaa/DxUVzE="; + hash = "sha256-+I1+K/XofGFt+wS4yVwRkjjFEWWbAvc17nfMFoQoVe4="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pywfa/default.nix b/pkgs/development/python-modules/pywfa/default.nix index 529417db98969..2aca36a07da71 100644 --- a/pkgs/development/python-modules/pywfa/default.nix +++ b/pkgs/development/python-modules/pywfa/default.nix @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "kcleal"; repo = "pywfa"; rev = "refs/tags/v${version}"; - hash = "sha256-oeVXK9uyH4E98tApKrA7dXifQYb41KuDTAZ40XgAaF8="; + hash = "sha256-TeJ7Jq4LR+I1+zeMeBtHZa9dR+CRJJG5sT99tB227P8="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/pywinrm/default.nix b/pkgs/development/python-modules/pywinrm/default.nix index 40e8c70ba83b5..2455b476a4d95 100644 --- a/pkgs/development/python-modules/pywinrm/default.nix +++ b/pkgs/development/python-modules/pywinrm/default.nix @@ -5,7 +5,7 @@ , mock , pytestCheckHook , requests -, requests_ntlm +, requests-ntlm , six , xmltodict }: @@ -24,7 +24,7 @@ buildPythonPackage rec { propagatedBuildInputs = [ requests - requests_ntlm + requests-ntlm six xmltodict ]; diff --git a/pkgs/development/python-modules/qbittorrent-api/default.nix b/pkgs/development/python-modules/qbittorrent-api/default.nix index d7b733f83322b..3bbbbedf1d22b 100644 --- a/pkgs/development/python-modules/qbittorrent-api/default.nix +++ b/pkgs/development/python-modules/qbittorrent-api/default.nix @@ -2,33 +2,31 @@ , buildPythonPackage , fetchPypi , requests -, six , urllib3 , packaging , setuptools -, wheel +, setuptools-scm }: buildPythonPackage rec { pname = "qbittorrent-api"; - version = "2023.11.57"; - format = "pyproject"; + version = "2024.1.58"; + pyproject = true; src = fetchPypi { inherit pname version; - hash = "sha256-fmFJW4PDQc7szu0ymE+fV9k6wUDLRHkOriEHDnzDSQg="; + hash = "sha256-6JyU9mr0xfRLB7AJOcnPc+PpF0EWi/R/Wy3lCKanAmA="; }; propagatedBuildInputs = [ requests - six urllib3 packaging ]; nativeBuildInputs = [ setuptools - wheel + setuptools-scm ]; # Tests require internet access diff --git a/pkgs/development/python-modules/qcodes/default.nix b/pkgs/development/python-modules/qcodes/default.nix index 779e7b390b219..b8b7ca6a5eb94 100644 --- a/pkgs/development/python-modules/qcodes/default.nix +++ b/pkgs/development/python-modules/qcodes/default.nix @@ -48,7 +48,7 @@ buildPythonPackage rec { pname = "qcodes"; - version = "0.42.1"; + version = "0.44.1"; pyproject = true; disabled = pythonOlder "3.9"; @@ -57,7 +57,7 @@ buildPythonPackage rec { owner = "QCoDeS"; repo = "Qcodes"; rev = "refs/tags/v${version}"; - hash = "sha256-oNQLIL5L3gtFS6yxqgLDI1s4s9UYqxGc8ASqHuZv6Rk="; + hash = "sha256-AggAVq/yfJUZRwoQb29QoIbVIAdV3solKCjivqucLZk="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/qcs-api-client/default.nix b/pkgs/development/python-modules/qcs-api-client/default.nix index 0b38510d66033..60ed1433794a5 100644 --- a/pkgs/development/python-modules/qcs-api-client/default.nix +++ b/pkgs/development/python-modules/qcs-api-client/default.nix @@ -6,7 +6,7 @@ , httpx , iso8601 , poetry-core -, pydantic +, pydantic_1 , pyjwt , pytest-asyncio , pytestCheckHook @@ -23,7 +23,7 @@ buildPythonPackage rec { pname = "qcs-api-client"; version = "0.23.1"; - format = "pyproject"; + pyproject = true; disabled = pythonOlder "3.7"; @@ -46,6 +46,7 @@ buildPythonPackage rec { pythonRelaxDeps = [ "attrs" "httpx" + "iso8601" ]; nativeBuildInputs = [ @@ -57,7 +58,7 @@ buildPythonPackage rec { attrs httpx iso8601 - pydantic + pydantic_1 pyjwt python-dateutil retrying diff --git a/pkgs/development/python-modules/qdrant-client/default.nix b/pkgs/development/python-modules/qdrant-client/default.nix index e57e607afcf3a..8913cc5d64db1 100644 --- a/pkgs/development/python-modules/qdrant-client/default.nix +++ b/pkgs/development/python-modules/qdrant-client/default.nix @@ -18,7 +18,7 @@ buildPythonPackage rec { pname = "qdrant-client"; - version = "1.7.0"; + version = "1.7.2"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -27,7 +27,7 @@ buildPythonPackage rec { owner = "qdrant"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-fC28uQK4mAN21VdAeT4NbezZY1qZVOIK3rs3v31S39Q="; + hash = "sha256-nGZV8ORThVxH+Q1xfpqUwPGw6LUoTZXj4KgfTLCvUEc="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/qemu/default.nix b/pkgs/development/python-modules/qemu/default.nix new file mode 100644 index 0000000000000..ba730548bca89 --- /dev/null +++ b/pkgs/development/python-modules/qemu/default.nix @@ -0,0 +1,63 @@ +{ lib +, buildPythonPackage +, pythonOlder +, qemu +, setuptools +, fuseSupport ? false, fusepy +, tuiSupport ? false, urwid, urwid-readline, pygments +}: + +buildPythonPackage { + pname = "qemu"; + version = "0.6.1.0a1"; + pyproject = true; + + disabled = pythonOlder "3.6"; + + src = qemu.src; + + prePatch = '' + cd python + ''; + + # ensure the version matches qemu-xxx/python/VERSION + preConfigure = '' + if [ "$version" != "$(cat ./VERSION)" ]; then + echo "The nix package version attribute is not in sync with the QEMU source version" > /dev/stderr + echo "Please update the version attribute in the nix expression of python3Packages.qemu to '$version'" > /dev/stderr + exit 1 + fi + ''; + + buildInputs = [ + setuptools + ]; + + propagatedBuildInputs = [ ] + ++ lib.optionals fuseSupport [ fusepy ] + ++ lib.optionals tuiSupport [ urwid urwid-readline pygments ]; + + # Project requires avocado-framework for testing, therefore replacing check phase + checkPhase = '' + for bin in $out/bin/*; do + $bin --help + done + ''; + + pythonImportsCheck = [ "qemu" ]; + + preFixup = + (lib.optionalString (! tuiSupport) '' + rm $out/bin/qmp-tui + '') + + (lib.optionalString (! fuseSupport) '' + rm $out/bin/qom-fuse + ''); + + meta = with lib; { + homepage = "http://www.qemu.org/"; + description = "Python tooling used by the QEMU project to build, configure, and test QEMU"; + license = licenses.gpl2Plus; + maintainers = with maintainers; [ devplayer0 davhau ]; + }; +} diff --git a/pkgs/development/python-modules/qingping-ble/default.nix b/pkgs/development/python-modules/qingping-ble/default.nix index 7c7431b01e872..1a678a2db4969 100644 --- a/pkgs/development/python-modules/qingping-ble/default.nix +++ b/pkgs/development/python-modules/qingping-ble/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "qingping-ble"; - version = "0.9.0"; + version = "0.10.0"; format = "pyproject"; disabled = pythonOlder "3.9"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "bluetooth-devices"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-h2PVrwesUaJfwJtuNf44bd1MefpSmOm7Q4A/URvd+IY="; + hash = "sha256-5w3KGJLdHFv6kURKTz3YImZNjaETiVqbbJTJpBSLSo8="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/qiskit-ibmq-provider/default.nix b/pkgs/development/python-modules/qiskit-ibmq-provider/default.nix index 24bee7d9dbc4b..030f94efc8524 100644 --- a/pkgs/development/python-modules/qiskit-ibmq-provider/default.nix +++ b/pkgs/development/python-modules/qiskit-ibmq-provider/default.nix @@ -6,7 +6,7 @@ , nest-asyncio , qiskit-terra , requests -, requests_ntlm +, requests-ntlm , websocket-client # Visualization inputs , withVisualization ? true @@ -57,7 +57,7 @@ buildPythonPackage rec { nest-asyncio qiskit-terra requests - requests_ntlm + requests-ntlm websocket-client websockets ] ++ lib.optionals withVisualization visualizationPackages; diff --git a/pkgs/development/python-modules/qrcode/default.nix b/pkgs/development/python-modules/qrcode/default.nix index 43379422263da..0b8f69889c339 100644 --- a/pkgs/development/python-modules/qrcode/default.nix +++ b/pkgs/development/python-modules/qrcode/default.nix @@ -1,20 +1,21 @@ { lib , buildPythonPackage , fetchPypi -, setuptools +, mock , pillow , pypng -, typing-extensions -, mock , pytestCheckHook -, testers +, pythonAtLeast , qrcode +, setuptools +, testers +, typing-extensions }: buildPythonPackage rec { pname = "qrcode"; version = "7.4.2"; - format = "pyproject"; + pyproject = true; src = fetchPypi { inherit pname version; @@ -48,11 +49,15 @@ buildPythonPackage rec { }; }; + disabledTests = lib.optionals (pythonAtLeast "3.12") [ + "test_change" + ]; + meta = with lib; { description = "Python QR Code image generator"; homepage = "https://github.com/lincolnloop/python-qrcode"; changelog = "https://github.com/lincolnloop/python-qrcode/blob/v${version}/CHANGES.rst"; license = licenses.bsd3; + maintainers = with maintainers; [ ]; }; - } diff --git a/pkgs/development/python-modules/qtile-extras/default.nix b/pkgs/development/python-modules/qtile-extras/default.nix index aa6eed8ec5731..1661918152f1a 100644 --- a/pkgs/development/python-modules/qtile-extras/default.nix +++ b/pkgs/development/python-modules/qtile-extras/default.nix @@ -5,25 +5,27 @@ , pytestCheckHook , xorgserver , imagemagick +, gobject-introspection , pulseaudio , pytest-asyncio , pytest-lazy-fixture , qtile , keyring , requests -, stravalib +, librsvg +, gtk3 }: buildPythonPackage rec { pname = "qtile-extras"; - version = "0.23.0"; + version = "0.24.0"; format = "pyproject"; src = fetchFromGitHub { owner = "elParaguayo"; repo = pname; rev = "v${version}"; - hash = "sha256-WI1z8vrbZiJw6fDHK27mKA+1FyZEQTMttIDNzSIX+PU="; + hash = "sha256-DJmnJcqhfCfl39SF3Ypv0PGtI4r8heaVv9JmpiCBGJo="; }; nativeBuildInputs = [ setuptools-scm ]; @@ -32,6 +34,7 @@ buildPythonPackage rec { pytestCheckHook xorgserver imagemagick + gobject-introspection ]; checkInputs = [ pytest-asyncio @@ -40,59 +43,41 @@ buildPythonPackage rec { pulseaudio keyring requests - stravalib + # stravalib # marked as broken due to https://github.com/stravalib/stravalib/issues/379 ]; disabledTests = [ - # AttributeError: 'ImgMask' object has no attribute '_default_size'. Did you mean: 'default_size'? - # cairocffi.pixbuf.ImageLoadingError: Pixbuf error: Unrecognized image file format - "test_draw" - "test_icons" - "1-x11-GithubNotifications-kwargs3" - "1-x11-SnapCast-kwargs8" - "1-x11-TVHWidget-kwargs10" - "test_tvh_widget_not_recording" - "test_tvh_widget_recording" - "test_tvh_widget_popup" - "test_snapcast_options" - "test_snapcast_icon" - "test_snapcast_icon_colour" - "test_snapcast_http_error" - "test_syncthing_not_syncing" - "test_syncthing_is_syncing" - "test_syncthing_http_error" - "test_githubnotifications_colours" - "test_githubnotifications_logging" - "test_githubnotifications_icon" - "test_githubnotifications_reload_token" - "test_image_size_horizontal" - "test_image_size_vertical" - "test_image_size_mask" - # ValueError: Namespace Gdk not available - # AssertionError: Window never appeared... - "test_statusnotifier_menu" - # AttributeError: 'str' object has no attribute 'canonical' - "test_strava_widget_display" - "test_strava_widget_popup" # Needs a running DBUS "test_brightness_power_saving" - "test_upower_all_batteries" - "test_upower_named_battery" - "test_upower_low_battery" - "test_upower_critical_battery" - "test_upower_charging" - "test_upower_show_text" "test_global_menu" "test_mpris2_popup" + "test_statusnotifier_menu" # No network connection "test_wifiicon_internet_check" - # AssertionErrors - "test_widget_init_config" + # Image difference is outside tolerance "test_decoration_output" + # Needs github token + "test_githubnotifications_reload_token" + # AttributeError: 'NoneType' object has no attribute 'theta' + "test_image_size_horizontal" + "test_image_size_vertical" + ]; + disabledTestPaths = [ + # Needs a running DBUS + "test/widget/test_iwd.py" + "test/widget/test_upower.py" + # Marked as broken due to https://github.com/stravalib/stravalib/issues/379 + "test/widget/test_strava.py" ]; preCheck = '' export HOME=$(mktemp -d) + export GDK_PIXBUF_MODULE_FILE=${librsvg}/lib/gdk-pixbuf-2.0/2.10.0/loaders.cache + sed -i 's#/usr/bin/sleep#sleep#' test/widget/test_snapcast.py ''; + propagatedBuildInputs = [ + gtk3 + ]; + pythonImportsCheck = [ "qtile_extras" ]; meta = with lib; { diff --git a/pkgs/development/python-modules/qtile/default.nix b/pkgs/development/python-modules/qtile/default.nix index ef1df14b21847..43e6cb00bfe24 100644 --- a/pkgs/development/python-modules/qtile/default.nix +++ b/pkgs/development/python-modules/qtile/default.nix @@ -32,14 +32,14 @@ buildPythonPackage rec { pname = "qtile"; - version = "0.23.0"; + version = "0.24.0"; format = "setuptools"; src = fetchFromGitHub { owner = "qtile"; repo = "qtile"; rev = "v${version}"; - hash = "sha256-WxnpkKqYGGEsFTt/1iCSiCzdESJP6HFJ6BztaMsMbYo="; + hash = "sha256-mgMRkoKT0Gp5/OfVQbkeDTkg9QRFn4PU3ziM5E6V+oI="; }; patches = [ diff --git a/pkgs/development/python-modules/quaternion/default.nix b/pkgs/development/python-modules/quaternion/default.nix index 4b7eef5c5ab2e..3b3e6a1ea790c 100644 --- a/pkgs/development/python-modules/quaternion/default.nix +++ b/pkgs/development/python-modules/quaternion/default.nix @@ -8,14 +8,14 @@ buildPythonPackage rec { pname = "quaternion"; - version = "2022.4.4"; + version = "2023.0.2"; format = "pyproject"; src = fetchFromGitHub { owner = "moble"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-fgyi50purfqUIe7zuz/52K6Sw3TjuvAX0EnzkXD//B4="; + hash = "sha256-G5Xbo6Ns98oqtY/AKz9CE7nt8j2b6+Hv14ZoKtlDCMQ="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/qutip/default.nix b/pkgs/development/python-modules/qutip/default.nix index 0b58eafa398d9..ddd3b18adbf03 100644 --- a/pkgs/development/python-modules/qutip/default.nix +++ b/pkgs/development/python-modules/qutip/default.nix @@ -18,7 +18,7 @@ buildPythonPackage rec { pname = "qutip"; - version = "4.7.3"; + version = "4.7.4"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -27,7 +27,7 @@ buildPythonPackage rec { owner = pname; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-cpzUHjZBpAbNEnYRuY1wUZouAEAgBaN9rWdxRSfI3bs="; + hash = "sha256-gfWYlQoGESE+EryLVfsnmBq9xFf3d92xOmEz4A32iqU="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/r2pipe/default.nix b/pkgs/development/python-modules/r2pipe/default.nix index 67acfee32d736..ab043450e40e1 100644 --- a/pkgs/development/python-modules/r2pipe/default.nix +++ b/pkgs/development/python-modules/r2pipe/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "r2pipe"; - version = "1.8.4"; + version = "1.8.8"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -31,7 +31,7 @@ buildPythonPackage rec { src = fetchPypi { inherit pname version; - hash = "sha256-dy0+q1i/rE+eIQUZXX9S4y2RiOBM0Kc49PqdvtFAE90="; + hash = "sha256-wAOmO5bev1zgPcJoiqKlS4anUKayo8HsncQXM+b1clQ="; }; # Tiny sanity check to make sure r2pipe finds radare2 (since r2pipe doesn't diff --git a/pkgs/development/python-modules/rapidfuzz/default.nix b/pkgs/development/python-modules/rapidfuzz/default.nix index 97f2a09e55e21..3dcffdd2ecc53 100644 --- a/pkgs/development/python-modules/rapidfuzz/default.nix +++ b/pkgs/development/python-modules/rapidfuzz/default.nix @@ -18,8 +18,8 @@ buildPythonPackage rec { pname = "rapidfuzz"; - version = "3.5.2"; - format = "pyproject"; + version = "3.6.1"; + pyproject = true; disabled = pythonOlder "3.7"; @@ -27,7 +27,7 @@ buildPythonPackage rec { owner = "maxbachmann"; repo = "RapidFuzz"; rev = "refs/tags/v${version}"; - hash = "sha256-D7Z0xKqAJAPKSAEK+3Mpz/LaEKqKYczp+m6SqfzufwA="; + hash = "sha256-QJVRT+d/IIGxkWfSNoXFSmbW017+8CTKuWD4W+TzvBs="; }; postPatch = '' diff --git a/pkgs/development/python-modules/rasterio/default.nix b/pkgs/development/python-modules/rasterio/default.nix index e9e611cb19bce..0e216ce185087 100644 --- a/pkgs/development/python-modules/rasterio/default.nix +++ b/pkgs/development/python-modules/rasterio/default.nix @@ -30,7 +30,7 @@ buildPythonPackage rec { pname = "rasterio"; - version = "4"; + version = "1.3.9"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -38,8 +38,8 @@ buildPythonPackage rec { src = fetchFromGitHub { owner = "rasterio"; repo = "rasterio"; - rev = "refs/tags/release-test-${version}"; - hash = "sha256-YO0FnmIEt+88f6k2mdXDSQg7UKq1Swr8wqVUGdRyQR4="; + rev = "refs/tags/${version}"; + hash = "sha256-Tp6BSU33FaszrIXQgU0Asb7IMue0C939o/atAKz+3Q4="; }; patches = [ diff --git a/pkgs/development/python-modules/rdkit/default.nix b/pkgs/development/python-modules/rdkit/default.nix index 7d0632ebc8361..8a29bc837cfaf 100644 --- a/pkgs/development/python-modules/rdkit/default.nix +++ b/pkgs/development/python-modules/rdkit/default.nix @@ -42,7 +42,7 @@ let in buildPythonPackage rec { pname = "rdkit"; - version = "2023.09.3"; + version = "2023.09.4"; pyproject = false; src = @@ -53,7 +53,7 @@ buildPythonPackage rec { owner = pname; repo = pname; rev = "Release_${versionTag}"; - hash = "sha256-bewOdmpnm6cArD5iaMKNqT8z4GUIpih+JzJ+wdo/lrI="; + hash = "sha256-yPpt7F3w17tZEe+HECODZ7p27QidNt1sd5f/T2V87NE="; }; unpackPhase = '' @@ -141,7 +141,7 @@ buildPythonPackage rec { checkPhase = '' export QT_QPA_PLATFORM='offscreen' export RDBASE=$(realpath ..) - export PYTHONPATH="$out/lib/${python.libPrefix}/site-packages:$PYTHONPATH" + export PYTHONPATH="$out/${python.sitePackages}:$PYTHONPATH" (cd $RDBASE/rdkit/Chem && python $RDBASE/rdkit/TestRunner.py test_list.py) ''; diff --git a/pkgs/development/python-modules/readmdict/default.nix b/pkgs/development/python-modules/readmdict/default.nix index b7d61f8c8f57d..d6ef1447a7b84 100644 --- a/pkgs/development/python-modules/readmdict/default.nix +++ b/pkgs/development/python-modules/readmdict/default.nix @@ -45,6 +45,6 @@ buildPythonPackage rec { description = "Read mdx/mdd files (repacking of readmdict from mdict-analysis)"; homepage = "https://github.com/ffreemt/readmdict"; license = licenses.mit; - maintainers = with maintainers; [ paveloom ]; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/development/python-modules/readme_renderer/default.nix b/pkgs/development/python-modules/readme-renderer/default.nix index 983de37f3932a..983de37f3932a 100644 --- a/pkgs/development/python-modules/readme_renderer/default.nix +++ b/pkgs/development/python-modules/readme-renderer/default.nix diff --git a/pkgs/development/python-modules/readme/default.nix b/pkgs/development/python-modules/readme/default.nix index 3d18bb8df7f5e..2e959bf268719 100644 --- a/pkgs/development/python-modules/readme/default.nix +++ b/pkgs/development/python-modules/readme/default.nix @@ -2,7 +2,7 @@ , buildPythonPackage , fetchPypi , pytest -, readme_renderer +, readme-renderer }: buildPythonPackage rec { @@ -20,7 +20,7 @@ buildPythonPackage rec { ]; propagatedBuildInputs = [ - readme_renderer + readme-renderer ]; checkPhase = '' @@ -28,7 +28,7 @@ buildPythonPackage rec { ''; # tests are not included with pypi release - # package is not readme_renderer + # package is not readme-renderer doCheck = false; meta = with lib; { diff --git a/pkgs/development/python-modules/recipe-scrapers/default.nix b/pkgs/development/python-modules/recipe-scrapers/default.nix index b9f29be757fec..30d0efc834323 100644 --- a/pkgs/development/python-modules/recipe-scrapers/default.nix +++ b/pkgs/development/python-modules/recipe-scrapers/default.nix @@ -9,18 +9,21 @@ , pytestCheckHook , responses , setuptools +, pythonOlder }: buildPythonPackage rec { pname = "recipe-scrapers"; - version = "14.52.0"; - format = "pyproject"; + version = "14.54.0"; + pyproject = true; + + disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "hhursev"; repo = "recipe-scrapers"; rev = "refs/tags/${version}"; - hash = "sha256-VdJZnwo+DwVDZuuuqk0X26CXs7ZrUFXqC8qEYaX74Zc="; + hash = "sha256-Q7ubT7SBHNxyvfqFhDmBjnW7ssoXBsMZR+eYg5CntHY="; }; nativeBuildInputs = [ @@ -40,16 +43,19 @@ buildPythonPackage rec { responses ]; - disabledTestPaths = [ - # This is not actual code, just some pre-written boiler-plate template - "templates/test_scraper.py" + disabledTests = [ + # Fixture is broken + "test_instructions" ]; - pythonImportsCheck = [ "recipe_scrapers" ]; + pythonImportsCheck = [ + "recipe_scrapers" + ]; meta = with lib; { - description = "Python package for scraping recipes data "; + description = "Python package for scraping recipes data"; homepage = "https://github.com/hhursev/recipe-scrapers"; + changelog = "https://github.com/hhursev/recipe-scrapers/releases/tag/${version}"; license = licenses.mit; maintainers = with maintainers; [ ambroisie ]; }; diff --git a/pkgs/development/python-modules/reconplogger/default.nix b/pkgs/development/python-modules/reconplogger/default.nix new file mode 100644 index 0000000000000..29f3c8b649aa2 --- /dev/null +++ b/pkgs/development/python-modules/reconplogger/default.nix @@ -0,0 +1,63 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, flask +, logmatic-python +, pytestCheckHook +, pythonOlder +, pyyaml +, requests +, setuptools +, testfixtures +}: + +buildPythonPackage rec { + pname = "reconplogger"; + version = "4.15.0"; + pyproject = true; + + disabled = pythonOlder "3.8"; + + src = fetchFromGitHub { + owner = "omni-us"; + repo = "reconplogger"; + rev = "refs/tags/v${version}"; + hash = "sha256-0+YOrMqyDK6uAni2h5b6P850veIkUiifX6aHzCnRHD0="; + }; + + nativeBuildInputs = [ + setuptools + ]; + + propagatedBuildInputs = [ + logmatic-python + pyyaml + ]; + + passthru.optional-dependencies = { + all = [ + flask + requests + ]; + }; + + nativeCheckInputs = [ + pytestCheckHook + testfixtures + ]; + + pythonImportsCheck = [ + "reconplogger" + ]; + + pytestFlagsArray = [ + "reconplogger_tests.py" + ]; + + meta = with lib; { + description = "Module to ease the standardization of logging within omni:us"; + homepage = "https://github.com/omni-us/reconplogger"; + license = licenses.mit; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/recursive-pth-loader/default.nix b/pkgs/development/python-modules/recursive-pth-loader/default.nix index 499ad3c23d07e..e42988eeff9a8 100644 --- a/pkgs/development/python-modules/recursive-pth-loader/default.nix +++ b/pkgs/development/python-modules/recursive-pth-loader/default.nix @@ -14,7 +14,7 @@ stdenv.mkDerivation { installPhase = '' - dst=$out/lib/${python.libPrefix}/site-packages + dst=$out/${python.sitePackages} mkdir -p $dst cp sitecustomize.* $dst/ ''; diff --git a/pkgs/development/python-modules/redis-om/default.nix b/pkgs/development/python-modules/redis-om/default.nix index aec5311351e47..df49fd470d1e8 100644 --- a/pkgs/development/python-modules/redis-om/default.nix +++ b/pkgs/development/python-modules/redis-om/default.nix @@ -2,6 +2,7 @@ , buildPythonPackage , fetchFromGitHub , pythonOlder +, pythonRelaxDepsHook , unasync , poetry-core , python @@ -33,10 +34,16 @@ buildPythonPackage rec { }; nativeBuildInputs = [ + pythonRelaxDepsHook unasync poetry-core ]; + # it has not been maintained at all for a half year and some dependencies are outdated + # https://github.com/redis/redis-om-python/pull/554 + # https://github.com/redis/redis-om-python/pull/577 + pythonRelaxDeps = true; + propagatedBuildInputs = [ click hiredis diff --git a/pkgs/development/python-modules/redshift-connector/default.nix b/pkgs/development/python-modules/redshift-connector/default.nix index f0845e50d5190..01f2766216e21 100644 --- a/pkgs/development/python-modules/redshift-connector/default.nix +++ b/pkgs/development/python-modules/redshift-connector/default.nix @@ -15,7 +15,7 @@ buildPythonPackage rec { pname = "redshift-connector"; - version = "2.0.917"; + version = "2.0.918"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -24,7 +24,7 @@ buildPythonPackage rec { owner = "aws"; repo = "amazon-redshift-python-driver"; rev = "refs/tags/v${version}"; - hash = "sha256-Qrh6ruB/e7ZeZ33fD9VmtAX+I6OUL5I/zjRv9oh1bO0="; + hash = "sha256-hGj/KZz3QYpA/MQE4TcX4wYazMs10RIJCDNyZ+puEYY="; }; # remove addops as they add test directory and coverage parameters to pytest diff --git a/pkgs/development/python-modules/regenmaschine/default.nix b/pkgs/development/python-modules/regenmaschine/default.nix index e3fb2889470e4..d76c06fe5d343 100644 --- a/pkgs/development/python-modules/regenmaschine/default.nix +++ b/pkgs/development/python-modules/regenmaschine/default.nix @@ -15,7 +15,7 @@ buildPythonPackage rec { pname = "regenmaschine"; - version = "2023.12.0"; + version = "2024.01.0"; pyproject = true; disabled = pythonOlder "3.10"; @@ -24,7 +24,7 @@ buildPythonPackage rec { owner = "bachya"; repo = "regenmaschine"; rev = "refs/tags/${version}"; - hash = "sha256-9VBqLmbWJCrfDw9T1qmE9KkdlS+MDnvoG8O9dPCuJDs="; + hash = "sha256-Vd8ACF2AXbT7FE/b0koIPUrNd9DgmjgS5unBuRiq784="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/regress/default.nix b/pkgs/development/python-modules/regress/default.nix index 4526c735a1898..b70e52008778f 100644 --- a/pkgs/development/python-modules/regress/default.nix +++ b/pkgs/development/python-modules/regress/default.nix @@ -1,7 +1,9 @@ { lib +, stdenv , fetchPypi , buildPythonPackage , rustPlatform +, libiconv }: buildPythonPackage rec { @@ -17,6 +19,8 @@ buildPythonPackage rec { nativeBuildInputs = with rustPlatform; [ cargoSetupHook maturinBuildHook ]; + buildInputs = lib.optionals stdenv.hostPlatform.isDarwin [ libiconv ]; + cargoDeps = rustPlatform.fetchCargoTarball { inherit src; name = "${pname}-${version}"; diff --git a/pkgs/development/python-modules/reolink-aio/default.nix b/pkgs/development/python-modules/reolink-aio/default.nix index 7a54987438663..0712eb586d43f 100644 --- a/pkgs/development/python-modules/reolink-aio/default.nix +++ b/pkgs/development/python-modules/reolink-aio/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "reolink-aio"; - version = "0.8.6"; + version = "0.8.7"; format = "setuptools"; disabled = pythonOlder "3.9"; @@ -19,7 +19,7 @@ buildPythonPackage rec { owner = "starkillerOG"; repo = "reolink_aio"; rev = "refs/tags/${version}"; - hash = "sha256-uc13IJb4b6sXNL35UUc3Sv4gh4BVVk0a+esA+ouhsFg="; + hash = "sha256-+Yhw7Wbt0K7BLXatd/UANnnNWPkxgk8SqAyV9Kk4hos="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/reproject/default.nix b/pkgs/development/python-modules/reproject/default.nix index 488a045211a18..bbab3a462dbb0 100644 --- a/pkgs/development/python-modules/reproject/default.nix +++ b/pkgs/development/python-modules/reproject/default.nix @@ -4,7 +4,7 @@ , astropy-healpix , buildPythonPackage , cloudpickle -, cython +, cython_3 , dask , fetchPypi , fsspec @@ -21,9 +21,9 @@ buildPythonPackage rec { pname = "reproject"; version = "0.13.0"; - format = "pyproject"; + pyproject = true; - disabled = pythonOlder "3.8"; + disabled = pythonOlder "3.9"; src = fetchPypi { inherit pname version; @@ -37,7 +37,7 @@ buildPythonPackage rec { nativeBuildInputs = [ astropy-extension-helpers - cython + cython_3 numpy oldest-supported-numpy setuptools-scm @@ -75,6 +75,7 @@ buildPythonPackage rec { description = "Reproject astronomical images"; downloadPage = "https://github.com/astropy/reproject"; homepage = "https://reproject.readthedocs.io"; + changelog = "https://github.com/astropy/reproject/releases/tag/v${version}"; license = licenses.bsd3; maintainers = with maintainers; [ smaret ]; }; diff --git a/pkgs/development/python-modules/reptor/default.nix b/pkgs/development/python-modules/reptor/default.nix index d48a84025e4c8..1f35854766f04 100644 --- a/pkgs/development/python-modules/reptor/default.nix +++ b/pkgs/development/python-modules/reptor/default.nix @@ -15,6 +15,7 @@ , pytest , pytestCheckHook , pythonOlder +, pythonRelaxDepsHook , pyyaml , reptor , requests @@ -22,16 +23,17 @@ , setuptools , sqlparse , termcolor -, toml +, tomli , tomli-w +, tomlkit , urllib3 , xmltodict }: buildPythonPackage rec { pname = "reptor"; - version = "0.7"; - format = "pyproject"; + version = "0.9"; + pyproject = true; disabled = pythonOlder "3.8"; @@ -39,10 +41,13 @@ buildPythonPackage rec { owner = "Syslifters"; repo = "reptor"; rev = "refs/tags/${version}"; - hash = "sha256-d76Hsf+leJKYOh7k/RVuo6adfjMW6yAYt+vh7KNh7sA="; + hash = "sha256-CjTedIl7ZkSFfKKhHmCadTd7zdz3gP7Q4uCscv5An38="; }; + pythonRelaxDeps = true; + nativeBuildInputs = [ + pythonRelaxDepsHook setuptools ]; @@ -61,7 +66,8 @@ buildPythonPackage rec { rich sqlparse termcolor - toml + tomli + tomlkit tomli-w urllib3 xmltodict diff --git a/pkgs/development/python-modules/requests_download/default.nix b/pkgs/development/python-modules/requests-download/default.nix index b31573a91ca0b..0d1a5fb10a45d 100644 --- a/pkgs/development/python-modules/requests_download/default.nix +++ b/pkgs/development/python-modules/requests-download/default.nix @@ -5,7 +5,7 @@ }: buildPythonPackage rec { - pname = "requests_download"; + pname = "requests-download"; version = "0.1.2"; format = "wheel"; @@ -16,7 +16,8 @@ buildPythonPackage rec { #}; src = fetchPypi { - inherit pname version format; + pname = "requests_download"; + inherit version format; sha256 = "1ballx1hljpdpyvqzqn79m0dc21z2smrnxk2ylb6dbpg5crrskcr"; }; diff --git a/pkgs/development/python-modules/requests_ntlm/default.nix b/pkgs/development/python-modules/requests-ntlm/default.nix index 43a002e1e19e8..43a002e1e19e8 100644 --- a/pkgs/development/python-modules/requests_ntlm/default.nix +++ b/pkgs/development/python-modules/requests-ntlm/default.nix diff --git a/pkgs/development/python-modules/requests-pkcs12/default.nix b/pkgs/development/python-modules/requests-pkcs12/default.nix index 4c939064d7597..87f20922a712a 100644 --- a/pkgs/development/python-modules/requests-pkcs12/default.nix +++ b/pkgs/development/python-modules/requests-pkcs12/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "requests-pkcs12"; - version = "1.22"; + version = "1.24"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "m-click"; repo = "requests_pkcs12"; rev = version; - hash = "sha256-YMFeWbPTwxP/+lYojXEbJf87FNHL6QrzOdOKF5JERSE="; + hash = "sha256-JLFUdg7kbjhlpGgrQ29U1TRTKhjDlvMGc/FRE+awfLc="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/restview/default.nix b/pkgs/development/python-modules/restview/default.nix index 43e877686bebd..88004743d73b2 100644 --- a/pkgs/development/python-modules/restview/default.nix +++ b/pkgs/development/python-modules/restview/default.nix @@ -2,7 +2,7 @@ , buildPythonPackage , fetchPypi , docutils -, readme_renderer +, readme-renderer , packaging , pygments , pytestCheckHook @@ -23,7 +23,7 @@ buildPythonPackage rec { propagatedBuildInputs = [ docutils - readme_renderer + readme-renderer packaging pygments ]; diff --git a/pkgs/development/python-modules/rethinkdb/default.nix b/pkgs/development/python-modules/rethinkdb/default.nix index f419a3afbaa33..35db8bd3dd3dd 100644 --- a/pkgs/development/python-modules/rethinkdb/default.nix +++ b/pkgs/development/python-modules/rethinkdb/default.nix @@ -8,12 +8,12 @@ buildPythonPackage rec { pname = "rethinkdb"; - version = "2.4.10"; + version = "2.4.10.post1"; pyproject = true; src = fetchPypi { inherit pname version; - hash = "sha256-Vez3RH3BH+wOLOmqxLpMC1f9xcnFfXfuZz1Z0kXHRmY="; + hash = "sha256-NjTgPuE91jf9cZa4BHS/RMZNProd0GnqkrlJJnAqYL0="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/retry_decorator/default.nix b/pkgs/development/python-modules/retry-decorator/default.nix index a2c984dfe4125..a2c984dfe4125 100644 --- a/pkgs/development/python-modules/retry_decorator/default.nix +++ b/pkgs/development/python-modules/retry-decorator/default.nix diff --git a/pkgs/development/python-modules/reuse/default.nix b/pkgs/development/python-modules/reuse/default.nix index 572c29931ad39..ee96a52fc0ebd 100644 --- a/pkgs/development/python-modules/reuse/default.nix +++ b/pkgs/development/python-modules/reuse/default.nix @@ -12,14 +12,14 @@ buildPythonPackage rec { pname = "reuse"; - version = "2.1.0"; + version = "3.0.1"; format = "pyproject"; src = fetchFromGitHub { owner = "fsfe"; repo = "reuse-tool"; rev = "refs/tags/v${version}"; - hash = "sha256-MEQiuBxe/ctHlAnmLhQY4QH62uAcHb7CGfZz+iZCRSk="; + hash = "sha256-hDvOT9BP/E95FTa8rvtdxQoEDYgfMAkCSbX5KKV3qbQ="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/rich-pixels/default.nix b/pkgs/development/python-modules/rich-pixels/default.nix index a086065725b55..7b77e59b6c9fa 100644 --- a/pkgs/development/python-modules/rich-pixels/default.nix +++ b/pkgs/development/python-modules/rich-pixels/default.nix @@ -1,6 +1,7 @@ { lib , buildPythonPackage , fetchFromGitHub +, fetchpatch , poetry-core , pytestCheckHook , syrupy @@ -21,6 +22,14 @@ buildPythonPackage rec { hash = "sha256-fbpnHEfBPWLSYhgETqKbdmmzt7Lu/4oKgetjgNvv04c="; }; + patches = [ + (fetchpatch { + name = "fix-version.patch"; + url = "https://github.com/darrenburns/rich-pixels/commit/ff1cc3fef789321831f29e9bf282ae6b337eddb2.patch"; + hash = "sha256-58ZHBNg1RCuOfuE034qF1SbAgoiWMNlSG3c5pCSLUyI="; + }) + ]; + nativeBuildInputs = [ poetry-core pythonRelaxDepsHook diff --git a/pkgs/development/python-modules/rich-rst/default.nix b/pkgs/development/python-modules/rich-rst/default.nix index 91e8f2b34d229..5db47dfc65ea1 100644 --- a/pkgs/development/python-modules/rich-rst/default.nix +++ b/pkgs/development/python-modules/rich-rst/default.nix @@ -8,14 +8,14 @@ buildPythonPackage rec { pname = "rich-rst"; - version = "1.1.7"; + version = "1.2.0"; format = "pyproject"; src = fetchFromGitHub { owner = "wasi-master"; repo = pname; - rev = "v${version}"; - hash = "sha256-s48hdJo1LIRXTf+PeSBa6y/AH1NLmnyAafFydJ+exDk="; + rev = "refs/tags/v${version}"; + hash = "sha256-jFPboZ5/T2I6EuyVM+45lrLWen8Kqf94gWXS1WDf1qU="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/ring-doorbell/default.nix b/pkgs/development/python-modules/ring-doorbell/default.nix index 8065fea978bfe..7b0695eb928ec 100644 --- a/pkgs/development/python-modules/ring-doorbell/default.nix +++ b/pkgs/development/python-modules/ring-doorbell/default.nix @@ -18,7 +18,7 @@ buildPythonPackage rec { pname = "ring-doorbell"; - version = "0.8.5"; + version = "0.8.6"; pyproject = true; disabled = pythonOlder "3.8"; @@ -26,7 +26,7 @@ buildPythonPackage rec { src = fetchPypi { pname = "ring_doorbell"; inherit version; - hash = "sha256-WYoElfkq0/uK3GPcIwDUP9w8l5zN9G2X/KDJbJNse9s="; + hash = "sha256-sjGN1I/SeI5POkACYBcUA76Fyk7XJln7A6ofg11ygrw="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/riscv-config/default.nix b/pkgs/development/python-modules/riscv-config/default.nix index f2ddbff5d43fb..6cc0471b854b3 100644 --- a/pkgs/development/python-modules/riscv-config/default.nix +++ b/pkgs/development/python-modules/riscv-config/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "riscv-config"; - version = "3.14.3"; + version = "3.17.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -19,7 +19,7 @@ buildPythonPackage rec { owner = "riscv-software-src"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-a6rTKCLAHrdfP/M8Q8YYSck4q+7tmospMFcCdIdNyy0="; + hash = "sha256-dMs900w5sXggqxU+2W8qKrKjGpyrXhA2QEbXQeaKZTs="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/rki-covid-parser/default.nix b/pkgs/development/python-modules/rki-covid-parser/default.nix index d7e12ba2293f1..4a9263f389c2a 100644 --- a/pkgs/development/python-modules/rki-covid-parser/default.nix +++ b/pkgs/development/python-modules/rki-covid-parser/default.nix @@ -6,22 +6,27 @@ , pytest-aiohttp , pytestCheckHook , pythonOlder +, setuptools }: buildPythonPackage rec { pname = "rki-covid-parser"; version = "1.3.3"; - format = "pyproject"; + pyproject = true; disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = "thebino"; - repo = pname; - rev = "v${version}"; + repo = "rki-covid-parser"; + rev = "refs/tags/v${version}"; hash = "sha256-e0MJjE4zgBPL+vt9EkgsdGrgqUyKK/1S9ZFxy56PUjc="; }; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ aiohttp ]; @@ -45,6 +50,7 @@ buildPythonPackage rec { meta = with lib; { description = "Python module for working with data from the Robert-Koch Institut"; homepage = "https://github.com/thebino/rki-covid-parser"; + changelog = "https://github.com/thebino/rki-covid-parser/blob/v${version}/CHANGELOG.md"; license = with licenses; [ asl20 ]; maintainers = with maintainers; [ fab ]; }; diff --git a/pkgs/development/python-modules/rmrl/default.nix b/pkgs/development/python-modules/rmrl/default.nix index 48a33ca47cdee..3b93126aa73c9 100644 --- a/pkgs/development/python-modules/rmrl/default.nix +++ b/pkgs/development/python-modules/rmrl/default.nix @@ -3,8 +3,10 @@ , pythonOlder , fetchFromGitHub , poetry-core +, pythonRelaxDepsHook , pdfrw , reportlab +, rmscene , setuptools , svglib , xdg @@ -12,26 +14,34 @@ buildPythonPackage rec { pname = "rmrl"; - version = "unstable-2022-12-11"; + version = "0.2.1-unstable-2023-06-1"; - disabled = pythonOlder "3.7"; + disabled = pythonOlder "3.10"; - format = "pyproject"; + pyproject = true; src = fetchFromGitHub { - owner = "naturale0"; + owner = "benneti"; repo = "rmrl"; - rev = "3c908536f11dfa92f81e7127ae76f18f0b2cc3e3"; - hash = "sha256-13pMfRe2McWDpBTlJy/TBT0W5wyd0EXDoocxeIzmqCo="; + rev = "e6f20322c80c6551174da1826c78261dfb3b74fe"; + hash = "sha256-jGWYrw6kcNSb4zhyCjap3l8+YCdOkk5kb5UCiBgW8u0="; }; nativeBuildInputs = [ poetry-core + pythonRelaxDepsHook + ]; + + pythonRelaxDeps = [ + "reportlab" + "rmscene" + "xdg" ]; propagatedBuildInputs = [ pdfrw reportlab + rmscene setuptools svglib xdg @@ -44,7 +54,7 @@ buildPythonPackage rec { meta = { description = "Render reMarkable documents to PDF"; - homepage = "https://github.com/naturale0/rmrl"; + homepage = "https://github.com/benneti/rmrl"; license = lib.licenses.gpl3Plus; maintainers = with lib.maintainers; [ dotlambda ]; }; diff --git a/pkgs/development/python-modules/rmscene/default.nix b/pkgs/development/python-modules/rmscene/default.nix new file mode 100644 index 0000000000000..9e6bba74d05b4 --- /dev/null +++ b/pkgs/development/python-modules/rmscene/default.nix @@ -0,0 +1,47 @@ +{ lib +, buildPythonPackage +, pythonOlder +, fetchFromGitHub +, poetry-core +, packaging +, hypothesis +, pytestCheckHook +}: + +buildPythonPackage rec { + pname = "rmscene"; + version = "0.5.0"; + pyproject = true; + + disabled = pythonOlder "3.10"; + + src = fetchFromGitHub { + owner = "ricklupton"; + repo = "rmscene"; + rev = "v${version}"; + hash = "sha256-uIvoKdW7caOfc8OEGIcyDwyos9NLwtZ++CeZdUO/G8M="; + }; + + nativeBuildInputs = [ + poetry-core + ]; + + propagatedBuildInputs = [ + packaging + ]; + + pythonImportsCheck = [ "rmscene" ]; + + nativeCheckInputs = [ + hypothesis + pytestCheckHook + ]; + + meta = { + changelog = "https://github.com/ricklupton/rmscene/blob/${src.rev}/README.md#changelog"; + description = "Read v6 .rm files from the reMarkable tablet"; + homepage = "https://github.com/ricklupton/rmscene"; + license = lib.licenses.mit; + maintainers = with lib.maintainers; [ dotlambda ]; + }; +} diff --git a/pkgs/development/python-modules/rns/default.nix b/pkgs/development/python-modules/rns/default.nix index 4b1ccc9bad622..3fc348be75612 100644 --- a/pkgs/development/python-modules/rns/default.nix +++ b/pkgs/development/python-modules/rns/default.nix @@ -5,12 +5,13 @@ , netifaces , pyserial , pythonOlder +, setuptools }: buildPythonPackage rec { pname = "rns"; - version = "0.6.9"; - format = "setuptools"; + version = "0.7.0"; + pyproject = true; disabled = pythonOlder "3.7"; @@ -18,9 +19,13 @@ buildPythonPackage rec { owner = "markqvist"; repo = "Reticulum"; rev = "refs/tags/${version}"; - hash = "sha256-L99eeDGbXXS9bff+r4j5AmmuICfeNKRD8+71+ojw320="; + hash = "sha256-iwW52jPSCwelfByerKHxKgH4NbWwCJLPyHXyBeJPwaM="; }; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ cryptography netifaces diff --git a/pkgs/development/python-modules/robotframework-databaselibrary/default.nix b/pkgs/development/python-modules/robotframework-databaselibrary/default.nix index d24bcf5bfc7a5..39b45d5816bd6 100644 --- a/pkgs/development/python-modules/robotframework-databaselibrary/default.nix +++ b/pkgs/development/python-modules/robotframework-databaselibrary/default.nix @@ -1,8 +1,10 @@ { lib , buildPythonPackage -, fetchPypi +, fetchFromGitHub , setuptools , robotframework +, robotframework-excellib +, pytestCheckHook }: buildPythonPackage rec { @@ -10,9 +12,11 @@ buildPythonPackage rec { version = "1.4.1"; pyproject = true; - src = fetchPypi { - inherit pname version; - sha256 = "sha256-/n4+xA/eLrcVEwlWyLQLrkX5waYaJKRkphwT22b7hTU="; + src = fetchFromGitHub { + owner = "MarketSquare"; + repo = "Robotframework-Database-Library"; + rev = "refs/tags/v${version}"; + hash = "sha256-BCVXmlrYOaG+Dh67OytUfQnJ9Ak3MtHR3swOXdAN/HU="; }; nativeBuildInputs = [ @@ -22,14 +26,18 @@ buildPythonPackage rec { propagatedBuildInputs = [ robotframework + robotframework-excellib ]; - # unit tests are impure - doCheck = false; + pythonImportsCheck = [ "DatabaseLibrary" ]; + + nativeCheckInputs = [ + pytestCheckHook + ]; meta = with lib; { description = "Database Library contains utilities meant for Robot Framework"; - homepage = "https://github.com/franz-see/Robotframework-Database-Library"; + homepage = "https://github.com/MarketSquare/Robotframework-Database-Library"; license = licenses.asl20; maintainers = with maintainers; [ talkara ]; }; diff --git a/pkgs/development/python-modules/robotframework-excellib/default.nix b/pkgs/development/python-modules/robotframework-excellib/default.nix new file mode 100644 index 0000000000000..550cc45e8ca35 --- /dev/null +++ b/pkgs/development/python-modules/robotframework-excellib/default.nix @@ -0,0 +1,39 @@ +{ lib +, buildPythonPackage +, fetchPypi +, setuptools +, openpyxl +, robotframework +}: + +buildPythonPackage rec { + pname = "robotframework-excellib"; + version = "2.0.1"; + pyproject = true; + + src = fetchPypi { + inherit pname version; + hash = "sha256-ZzAwlYM8DgWD1hfWRnY8u2RnZc3V368kgigBApeDZYg="; + }; + + nativeBuildInputs = [ + setuptools + ]; + + propagatedBuildInputs = [ + openpyxl + robotframework + ]; + + pythonImportsCheck = [ "ExcelLibrary" ]; + + # upstream has no tests + doCheck = false; + + meta = { + description = "Robot Framework library for working with Excel documents"; + homepage = "https://github.com/peterservice-rnd/robotframework-excellib"; + license = lib.licenses.asl20; + maintainers = with lib.maintainers; [ dotlambda ]; + }; +} diff --git a/pkgs/development/python-modules/robotframework-seleniumlibrary/default.nix b/pkgs/development/python-modules/robotframework-seleniumlibrary/default.nix index d014d04419759..961d967b31e69 100644 --- a/pkgs/development/python-modules/robotframework-seleniumlibrary/default.nix +++ b/pkgs/development/python-modules/robotframework-seleniumlibrary/default.nix @@ -41,24 +41,9 @@ buildPythonPackage rec { robotstatuschecker ]; - disabledTestPaths = [ - # https://github.com/robotframework/SeleniumLibrary/issues/1804 - "utest/test/keywords/test_webdrivercache.py" - ]; - - disabledTests = [ - "test_create_opera_executable_path_not_set" - "test_create_opera_executable_path_set" - "test_create_opera_with_options" - "test_create_opera_with_service_log_path_real_path" - "test_get_executable_path" - "test_get_ff_profile_instance_FirefoxProfile" - "test_has_options" - "test_importer" - "test_log_file_with_index_exist" - "test_opera" - "test_single_method" - ]; + preCheck = '' + mkdir utest/output_dir + ''; meta = with lib; { changelog = "https://github.com/robotframework/SeleniumLibrary/blob/${src.rev}/docs/SeleniumLibrary-${version}.rst"; diff --git a/pkgs/development/python-modules/robotframework/default.nix b/pkgs/development/python-modules/robotframework/default.nix index 31bd894f5c01e..f87fe2bdd37a7 100644 --- a/pkgs/development/python-modules/robotframework/default.nix +++ b/pkgs/development/python-modules/robotframework/default.nix @@ -1,24 +1,40 @@ -{ lib, fetchFromGitHub, buildPythonPackage, jsonschema }: +{ lib +, buildPythonPackage +, pythonOlder +, fetchFromGitHub +, setuptools +, jsonschema +, python +}: buildPythonPackage rec { pname = "robotframework"; - version = "6.1.1"; - format = "setuptools"; + version = "7.0"; + pyproject = true; + + disabled = pythonOlder "3.8"; src = fetchFromGitHub { - owner = pname; - repo = pname; + owner = "robotframework"; + repo = "robotframework"; rev = "refs/tags/v${version}"; - hash = "sha256-vtP0TVkCMrm0CRXlpZvVTBf7yd8+3p+nRArMWyQUn4k="; + hash = "sha256-IyOm2MTHj2rOew/IkyGIfI4XZSFU88+Tx8KHKIRT2G4="; }; - nativeCheckInputs = [ jsonschema ]; + nativeBuildInputs = [ + setuptools + ]; + + nativeCheckInputs = [ + jsonschema + ]; checkPhase = '' - python3 utest/run.py + ${python.interpreter} utest/run.py ''; meta = with lib; { + changelog = "https://github.com/robotframework/robotframework/blob/master/doc/releasenotes/rf-${version}.rst"; description = "Generic test automation framework"; homepage = "https://robotframework.org/"; license = licenses.asl20; diff --git a/pkgs/development/python-modules/robotstatuschecker/default.nix b/pkgs/development/python-modules/robotstatuschecker/default.nix index ef338ef0d341a..fb0d137c9b066 100644 --- a/pkgs/development/python-modules/robotstatuschecker/default.nix +++ b/pkgs/development/python-modules/robotstatuschecker/default.nix @@ -1,9 +1,15 @@ -{ lib, buildPythonPackage, fetchFromGitHub, python, robotframework }: +{ lib +, buildPythonPackage +, fetchFromGitHub +, setuptools +, robotframework +, python +}: buildPythonPackage rec { - version = "3.0.1"; - format = "setuptools"; pname = "robotstatuschecker"; + version = "3.0.1"; + pyproject = true; # no tests included in PyPI tarball src = fetchFromGitHub { @@ -13,10 +19,24 @@ buildPythonPackage rec { hash = "sha256-yW6353gDwo/IzoWOB8oelaS6IUbvTtwwDT05yD7w6UA="; }; + postPatch = '' + # https://github.com/robotframework/statuschecker/issues/46 + substituteInPlace test/tests.robot \ + --replace-fail BuiltIn.Log Log + ''; + + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ robotframework ]; checkPhase = '' + runHook preCheck + ${python.interpreter} test/run.py + + runHook postCheck ''; meta = with lib; { diff --git a/pkgs/development/python-modules/rokuecp/default.nix b/pkgs/development/python-modules/rokuecp/default.nix index 34a5c17a47721..00f710060cc7b 100644 --- a/pkgs/development/python-modules/rokuecp/default.nix +++ b/pkgs/development/python-modules/rokuecp/default.nix @@ -17,7 +17,7 @@ buildPythonPackage rec { pname = "rokuecp"; - version = "0.18.2"; + version = "0.19.0"; format = "pyproject"; disabled = pythonOlder "3.9"; @@ -26,7 +26,7 @@ buildPythonPackage rec { owner = "ctalkington"; repo = "python-rokuecp"; rev = "refs/tags/${version}"; - hash = "sha256-fgnR3TZh+cHvC8qJnvwfrrtxCdEr89Uw8ciACzaQPYE="; + hash = "sha256-e7BY0Y2SdAtECKqOCUZfq7PcCR2bhQ4lESQD9jTaqpI="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/rotary-embedding-torch/default.nix b/pkgs/development/python-modules/rotary-embedding-torch/default.nix index 91bb5a00231cb..f9467f63e48c5 100644 --- a/pkgs/development/python-modules/rotary-embedding-torch/default.nix +++ b/pkgs/development/python-modules/rotary-embedding-torch/default.nix @@ -7,6 +7,7 @@ , wheel # dependencies +, beartype , einops , torch }: @@ -29,6 +30,7 @@ buildPythonPackage rec { ]; propagatedBuildInputs = [ + beartype einops torch ]; @@ -42,6 +44,7 @@ buildPythonPackage rec { meta = with lib; { description = "Implementation of Rotary Embeddings, from the Roformer paper, in Pytorch"; homepage = "https://github.com/lucidrains/rotary-embedding-torch"; + changelog = "https://github.com/lucidrains/rotary-embedding-torch/releases/tag/${version}"; license = licenses.mit; maintainers = teams.tts.members; }; diff --git a/pkgs/development/python-modules/rpyc4/default.nix b/pkgs/development/python-modules/rpyc4/default.nix new file mode 100644 index 0000000000000..c883ebef4dc67 --- /dev/null +++ b/pkgs/development/python-modules/rpyc4/default.nix @@ -0,0 +1,74 @@ +{ lib +, stdenv +, buildPythonPackage +, fetchFromGitHub +, setuptools +, hatchling +, plumbum +, pytestCheckHook +, pythonOlder +, pythonAtLeast +}: + +buildPythonPackage rec { + pname = "rpyc4"; + # Pinned version for linien, see also: + # https://github.com/linien-org/pyrp3/pull/10#discussion_r1302816237 + version = "4.1.5"; + format = "pyproject"; + + # Since this is an outdated version, upstream might have fixed the + # compatibility issues with Python3.12, but we can't enjoy them yet. + disabled = pythonOlder "3.7" || pythonAtLeast "3.12"; + + src = fetchFromGitHub { + owner = "tomerfiliba"; + repo = "rpyc"; + rev = version; + hash = "sha256-8NOcXZDR3w0TNj1+LZ7lzQAt7yDgspjOp2zk1bsbVls="; + }; + + nativeBuildInputs = [ + setuptools + hatchling + ]; + + propagatedBuildInputs = [ + plumbum + ]; + + nativeCheckInputs = [ + pytestCheckHook + ]; + + disabledTests = [ + # Disable tests that requires network access + "test_api" + "test_close_timeout" + "test_deploy" + "test_listing" + "test_pruning" + "test_rpyc" + # Test is outdated + # ssl.SSLError: [SSL: NO_CIPHERS_AVAILABLE] no ciphers available (_ssl.c:997) + "test_ssl_conenction" + ]; + disabledTestPaths = [ + "tests/test_ssh.py" + "tests/test_teleportation.py" + ]; + + pythonImportsCheck = [ + "rpyc" + ]; + + doCheck = !stdenv.isDarwin; + + meta = with lib; { + description = "Remote Python Call (RPyC), a transparent and symmetric RPC library"; + homepage = "https://rpyc.readthedocs.org"; + changelog = "https://github.com/tomerfiliba-org/rpyc/blob/${version}/CHANGELOG.rst"; + license = with licenses; [ mit ]; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/rtfunicode/default.nix b/pkgs/development/python-modules/rtfunicode/default.nix new file mode 100644 index 0000000000000..2de60bc6bef92 --- /dev/null +++ b/pkgs/development/python-modules/rtfunicode/default.nix @@ -0,0 +1,29 @@ +{ buildPythonPackage +, lib +, fetchFromGitHub +, unittestCheckHook +}: + +buildPythonPackage rec { + pname = "rtfunicode"; + version = "1.4"; + + src = fetchFromGitHub { + owner = "mjpieters"; + repo = "rtfunicode"; + rev = "refs/tags/${version}"; + hash = "sha256-5lmiazxiEENpdqzVgoKQoG2OW/w5nGmC8odulo2XaLo="; + }; + + nativeBuildInputs = [ unittestCheckHook ]; + + pythonImportsCheck = [ "rtfunicode" ]; + + meta = with lib; { + description = "Encoder for unicode to RTF 1.5 command sequences"; + maintainers = [ maintainers.lucasew ]; + license = licenses.bsd2; + homepage = "https://github.com/mjpieters/rtfunicode"; + changelog = "https://github.com/mjpieters/rtfunicode/releases/tag/${version}"; + }; +} diff --git a/pkgs/development/python-modules/rtree/default.nix b/pkgs/development/python-modules/rtree/default.nix index b4a2cc68ab8fa..ff4b3b85e9cf0 100644 --- a/pkgs/development/python-modules/rtree/default.nix +++ b/pkgs/development/python-modules/rtree/default.nix @@ -1,23 +1,27 @@ { lib , stdenv , buildPythonPackage -, fetchPypi +, fetchFromGitHub , libspatialindex , numpy , pytestCheckHook , pythonOlder +, setuptools +, wheel }: buildPythonPackage rec { pname = "rtree"; - version = "1.1.0"; - format = "setuptools"; - disabled = pythonOlder "3.7"; - - src = fetchPypi { - pname = "Rtree"; - inherit version; - hash = "sha256-b47lBN3l0AWyWwiq9b4LNASvOtX+zm4d3N41kIp5ipU="; + version = "1.2.0"; + pyproject = true; + + disabled = pythonOlder "3.8"; + + src = fetchFromGitHub { + owner = "Toblerity"; + repo = "rtree"; + rev = "refs/tags/${version}"; + hash = "sha256-RmAiyYrkUMBN/ebmo27WvFcRmYlKkywuQHLLUbluTTw="; }; postPatch = '' @@ -25,6 +29,11 @@ buildPythonPackage rec { 'find_library("spatialindex_c")' '"${libspatialindex}/lib/libspatialindex_c${stdenv.hostPlatform.extensions.sharedLibrary}"' ''; + nativeBuildInputs = [ + setuptools + wheel + ]; + buildInputs = [ libspatialindex ]; nativeCheckInputs = [ @@ -36,7 +45,8 @@ buildPythonPackage rec { meta = with lib; { description = "R-Tree spatial index for Python GIS"; - homepage = "https://toblerity.org/rtree/"; + homepage = "https://github.com/Toblerity/rtree"; + changelog = "https://github.com/Toblerity/rtree/blob/${version}/CHANGES.rst"; license = licenses.mit; maintainers = with maintainers; [ bgamari ]; }; diff --git a/pkgs/development/python-modules/ruyaml/default.nix b/pkgs/development/python-modules/ruyaml/default.nix index e5b2108831df1..4131200f2276a 100644 --- a/pkgs/development/python-modules/ruyaml/default.nix +++ b/pkgs/development/python-modules/ruyaml/default.nix @@ -11,32 +11,23 @@ buildPythonPackage rec { pname = "ruyaml"; version = "0.91.0"; - format = "setuptools"; + pyproject = true; disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = "pycontribs"; - repo = pname; - rev = "v${version}"; - sha256 = "0gxvwry7n1gczxkjzyfrr3fammllkvnnamja4yln8xrg3n1h89al"; + repo = "ruyaml"; + rev = "refs/tags/v${version}"; + hash = "sha256-A37L/voBrn2aZ7xT8+bWdZJxbWRjnxbstQtSyUeN1sA="; }; - patches = [ - (fetchpatch { - name = "remove-setuptools-scm-git-archive-from-setupcfg.patch"; - url = "https://github.com/pycontribs/ruyaml/commit/8922dd826cbb97b29e9826b00fb28a65d584e985.patch"; - includes = [ "setup.cfg" ]; - hash = "sha256-XAsORoPvYRElHswlZ4S377UwuJNCU1JuCz5iyFXoXOQ="; - }) - + postPatch = '' # https://github.com/pycontribs/ruyaml/pull/107 - (fetchpatch { - name = "remove-setuptools-scm-git-archive-from-pyproject.patch"; - url = "https://github.com/pycontribs/ruyaml/commit/4d605bf63f799696c8ba3c1f0a0f505db0ca33ce.patch"; - hash = "sha256-X6HWXBot5ZIo+odoSHhXMb03tgpQfRw/Ze8nFgH43ZI="; - }) - ]; + substituteInPlace pyproject.toml \ + --replace '"pip >= 19.3.1",' "" \ + --replace '"setuptools_scm_git_archive >= 1.1",' "" + ''; nativeBuildInputs = [ setuptools-scm @@ -58,9 +49,17 @@ buildPythonPackage rec { "ruyaml" ]; + disabledTests = [ + # Assertion error + "test_issue_60" + "test_issue_60_1" + "test_issue_61" + ]; + meta = with lib; { description = "YAML 1.2 loader/dumper package for Python"; homepage = "https://ruyaml.readthedocs.io/"; + changelog = "https://github.com/pycontribs/ruyaml/releases/tag/v${version}"; license = with licenses; [ mit ]; maintainers = with maintainers; [ fab ]; }; diff --git a/pkgs/development/python-modules/safe-pysha3/default.nix b/pkgs/development/python-modules/safe-pysha3/default.nix index a71cce569ce7d..bb96ee1c2dcb9 100644 --- a/pkgs/development/python-modules/safe-pysha3/default.nix +++ b/pkgs/development/python-modules/safe-pysha3/default.nix @@ -2,7 +2,6 @@ , buildPythonPackage , fetchPypi , pythonOlder -, python }: buildPythonPackage rec { @@ -16,6 +15,12 @@ buildPythonPackage rec { hash = "sha256-5CkUax7dGYssqTSiBGplZWxdMbDsiUu9YFUSf03q/xc="; }; + # AttributeError: 'Keccak_224Tests' object has no attribute 'failIf'. + postPatch = '' + substituteInPlace tests.py \ + --replace "failIf" "assertFalse" + ''; + pythonImportsCheck = [ "sha3" ]; diff --git a/pkgs/development/python-modules/safetensors/default.nix b/pkgs/development/python-modules/safetensors/default.nix index 976d6b9b3fa81..4005a620d8a6e 100644 --- a/pkgs/development/python-modules/safetensors/default.nix +++ b/pkgs/development/python-modules/safetensors/default.nix @@ -16,22 +16,22 @@ buildPythonPackage rec { pname = "safetensors"; - version = "0.3.3"; - format = "pyproject"; + version = "0.4.2"; + pyproject = true; disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "huggingface"; - repo = pname; + repo = "safetensors"; rev = "refs/tags/v${version}"; - hash = "sha256-U+indMoLFN6vMZkJTWFG08lsdXuK5gOfgaHmUVl6DPk="; + hash = "sha256-hdPUI8k7CCQwt2C/AsjUHRmAL6ob+yCN97KkWtqOQL8="; }; cargoDeps = rustPlatform.fetchCargoTarball { inherit src; sourceRoot = "${src.name}/bindings/python"; - hash = "sha256-MhRs9tFCmVZI5O0EVRUbo4ZnUVRQ0EfQTU+E1K+qKZI="; + hash = "sha256-7n9aYlha6IaPsZ2zMfD5EIkrk8ENwMBwj41s6QU7ml0="; }; sourceRoot = "${src.name}/bindings/python"; @@ -41,6 +41,7 @@ buildPythonPackage rec { cargo rustc rustPlatform.cargoSetupHook + rustPlatform.maturinBuildHook ]; buildInputs = lib.optionals stdenv.isDarwin [ libiconv ]; @@ -54,6 +55,9 @@ buildPythonPackage rec { "tests/test_flax_comparison.py" "tests/test_paddle_comparison.py" "tests/test_tf_comparison.py" + ] ++ lib.optionals stdenv.isDarwin [ + # don't require mlx (not in Nixpkgs) to run tests + "tests/test_mlx_comparison.py" ]; pythonImportsCheck = [ diff --git a/pkgs/development/python-modules/sagemaker/default.nix b/pkgs/development/python-modules/sagemaker/default.nix index db1d0b3f0abd0..0710b82176e8a 100644 --- a/pkgs/development/python-modules/sagemaker/default.nix +++ b/pkgs/development/python-modules/sagemaker/default.nix @@ -26,7 +26,7 @@ buildPythonPackage rec { pname = "sagemaker"; - version = "2.199.0"; + version = "2.206.0"; format = "setuptools"; disabled = pythonOlder "3.8"; @@ -35,7 +35,7 @@ buildPythonPackage rec { owner = "aws"; repo = "sagemaker-python-sdk"; rev = "refs/tags/v${version}"; - hash = "sha256-zAYO8zf3FpEI1sr6Iv9WP56NFmwYGH2dtRTSJhsSYC8="; + hash = "sha256-aKLv8bXH1lq6yBeFsR2odtTo4sbaHlSyeSUnKdIzW9Q="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/schema-salad/default.nix b/pkgs/development/python-modules/schema-salad/default.nix index 2e617fa8c3fc6..86a1ba65598df 100644 --- a/pkgs/development/python-modules/schema-salad/default.nix +++ b/pkgs/development/python-modules/schema-salad/default.nix @@ -2,29 +2,30 @@ , black , buildPythonPackage , cachecontrol -, fetchPypi +, fetchFromGitHub , importlib-resources -, lockfile , mistune -, mypy +, mypy-extensions , pytestCheckHook , pythonOlder , rdflib +, requests , ruamel-yaml -, setuptools , setuptools-scm }: buildPythonPackage rec { pname = "schema-salad"; - version = "8.5.20231201181309"; + version = "8.5.20240102191336.dev7+g8e95468"; format = "setuptools"; disabled = pythonOlder "3.7"; - src = fetchPypi { - inherit pname version; - hash = "sha256-q4djcBt+8PEUekWNKlivKnDXrJBAUKGZ1252ym/E4bI="; + src = fetchFromGitHub { + owner = "common-workflow-language"; + repo = "schema_salad"; + rev = "8e954684b08d222d54b7eff680eaa4d4e65920a9"; + hash = "sha256-VoFFKe6XHDytj5UlmsN14RevKcgpl+DSDMGDVS2Ols4="; }; nativeBuildInputs = [ @@ -33,14 +34,15 @@ buildPythonPackage rec { propagatedBuildInputs = [ cachecontrol - importlib-resources - lockfile mistune - mypy + mypy-extensions rdflib + requests ruamel-yaml - setuptools # needs pkg_resources at runtime - ] ++ cachecontrol.optional-dependencies.filecache; + ] ++ cachecontrol.optional-dependencies.filecache + ++ lib.optionals (pythonOlder "3.9") [ + importlib-resources + ]; nativeCheckInputs = [ pytestCheckHook @@ -51,6 +53,7 @@ buildPythonPackage rec { ''; disabledTests = [ + "test_load_by_yaml_metaschema" # Setup for these tests requires network access "test_secondaryFiles" "test_outputBinding" @@ -75,7 +78,5 @@ buildPythonPackage rec { changelog = "https://github.com/common-workflow-language/schema_salad/releases/tag/${version}"; license = with licenses; [ asl20 ]; maintainers = with maintainers; [ veprbl ]; - # https://github.com/common-workflow-language/schema_salad/issues/721 - broken = versionAtLeast mistune.version "2.1"; }; } diff --git a/pkgs/development/python-modules/schemdraw/default.nix b/pkgs/development/python-modules/schemdraw/default.nix index bf4bcee43758c..441e668f81fc7 100644 --- a/pkgs/development/python-modules/schemdraw/default.nix +++ b/pkgs/development/python-modules/schemdraw/default.nix @@ -2,6 +2,7 @@ , buildPythonPackage , pythonOlder , fetchFromGitHub +, setuptools , pyparsing , matplotlib , latex2mathml @@ -13,7 +14,7 @@ buildPythonPackage rec { pname = "schemdraw"; - version = "0.17"; + version = "0.18"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -22,9 +23,13 @@ buildPythonPackage rec { owner = "cdelker"; repo = pname; rev = version; - hash = "sha256-wa/IeNGZynU/xKwyFwebXcFaruhBFqGWsrZYaIEVa8Q="; + hash = "sha256-JJc3LA+fqB+2g7pPIZ8YMV921EyYpLZrHSJCYyYThZg="; }; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ pyparsing ]; diff --git a/pkgs/development/python-modules/schwifty/default.nix b/pkgs/development/python-modules/schwifty/default.nix index 9f07bb88d58e3..1a33c71f7ff5f 100644 --- a/pkgs/development/python-modules/schwifty/default.nix +++ b/pkgs/development/python-modules/schwifty/default.nix @@ -21,14 +21,14 @@ buildPythonPackage rec { pname = "schwifty"; - version = "2023.11.2"; + version = "2024.1.1.post0"; format = "pyproject"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-lyyAx8VDIRO72xW64gjcsZw2C31hV3YCLIGSmdlIJeI="; + hash = "sha256-ZFDu+stuKdsVc8bTuSZ4LZX8BuQhORjyEMosnrk1rX0="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/scikit-hep-testdata/default.nix b/pkgs/development/python-modules/scikit-hep-testdata/default.nix index de78e1dc93604..fd4e5100c2872 100644 --- a/pkgs/development/python-modules/scikit-hep-testdata/default.nix +++ b/pkgs/development/python-modules/scikit-hep-testdata/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "scikit-hep-testdata"; - version = "0.4.35"; + version = "0.4.38"; format = "pyproject"; disabled = pythonOlder "3.6"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "scikit-hep"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-1SROsrl7zBaZRDju1M6wlKLZypk9OswA8kromiJGeqw="; + hash = "sha256-/+1eENbpng/X1g108cEGiTZlIkdcqqnm9wyN9ECH5D4="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/scikit-learn/default.nix b/pkgs/development/python-modules/scikit-learn/default.nix index cd66ed54be76c..4b33027fb99bd 100644 --- a/pkgs/development/python-modules/scikit-learn/default.nix +++ b/pkgs/development/python-modules/scikit-learn/default.nix @@ -24,14 +24,14 @@ buildPythonPackage rec { pname = "scikit-learn"; - version = "1.3.2"; + version = "1.4.0"; pyproject = true; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - hash = "sha256-ovVMdqzMFaNL+5Bm5selbB5yNd2ldiuZB5IzC1LM+wU="; + hash = "sha256-1Dc8mE66IOOTIW7dUaPj7t5Wy+k9QkdRbSBWQ8O5MSE="; }; buildInputs = [ diff --git a/pkgs/development/python-modules/scipy/default.nix b/pkgs/development/python-modules/scipy/default.nix index caca48153b72b..ec6e966d79bf4 100644 --- a/pkgs/development/python-modules/scipy/default.nix +++ b/pkgs/development/python-modules/scipy/default.nix @@ -13,6 +13,9 @@ , pkg-config , pythran , wheel +, nose +, setuptools +, hypothesis , pytestCheckHook , pytest-xdist , numpy @@ -31,8 +34,8 @@ let # nix-shell maintainers/scripts/update.nix --argstr package python3.pkgs.scipy # # The update script uses sed regexes to replace them with the updated hashes. - version = "1.11.4"; - srcHash = "sha256-hNAZOMDFYqZpb67Pzg/WALWagFYvqYO1jOmcipDDRbE="; + version = "1.12.0"; + srcHash = "sha256-PuiyYTgSegDTV9Kae5N68FOXT1jyJrNv9p2aFP70Z20="; datasetsHashes = { ascent = "1qjp35ncrniq9rhzb14icwwykqg2208hcssznn3hz27w39615kh3"; ecg = "1bwbjp43b7znnwha5hv6wiz3g0bhwrpqpi75s12zidxrbwvd62pj"; @@ -75,13 +78,11 @@ in buildPythonPackage { }) ]; - # Relax deps a bit + # Upstream complicated numpy version pinning is causing issues in the + # configurePhase, so we pass on it. postPatch = '' substituteInPlace pyproject.toml \ - --replace 'meson-python>=0.12.1,<0.15.0' 'meson-python' \ - --replace 'numpy==' 'numpy>=' \ - --replace "pybind11>=2.10.4,<2.11.1" "pybind11>=2.10.4,<2.12.0" \ - --replace 'wheel<0.41.0' 'wheel' + --replace-fail 'numpy==' 'numpy>=' \ ''; nativeBuildInputs = [ @@ -91,6 +92,7 @@ in buildPythonPackage { pythran pkg-config wheel + setuptools ]; buildInputs = [ @@ -108,6 +110,8 @@ in buildPythonPackage { __darwinAllowLocalNetworking = true; nativeCheckInputs = [ + nose + hypothesis pytestCheckHook pytest-xdist ]; @@ -157,42 +161,9 @@ in buildPythonPackage { # hardeningDisable = lib.optionals (stdenv.isAarch64 && stdenv.isDarwin) [ "stackprotector" ]; - checkPhase = '' - runHook preCheck - - # Adapted from pytestCheckHook because scipy uses a custom check phase. - # It needs to pass `$args` as a Python list to `scipy.test` rather than as - # arguments to pytest on the command-line. - args="" - if [ -n "$disabledTests" ]; then - disabledTestsString=$(_pytestComputeDisabledTestsString "''${disabledTests[@]}") - args+="'-k','$disabledTestsString'" - fi - - if [ -n "''${disabledTestPaths-}" ]; then - eval "disabledTestPaths=($disabledTestPaths)" - fi - - for path in ''${disabledTestPaths[@]}; do - if [ ! -e "$path" ]; then - echo "Disabled tests path \"$path\" does not exist. Aborting" - exit 1 - fi - args+="''${args:+,}'--ignore=\"$path\"'" - done - args+="''${args:+,}$(printf \'%s\', "''${pytestFlagsArray[@]}")" - args=''${args%,} - - pushd "$out" + preCheck = '' export OMP_NUM_THREADS=$(( $NIX_BUILD_CORES / 4 )) - ${python.interpreter} -c "import scipy, sys; sys.exit(scipy.test( - 'fast', - verbose=10, - extra_argv=[$args], - parallel=$NIX_BUILD_CORES - ) != True)" - popd - runHook postCheck + cd $out ''; requiredSystemFeatures = [ "big-parallel" ]; # the tests need lots of CPU time diff --git a/pkgs/development/python-modules/scmrepo/default.nix b/pkgs/development/python-modules/scmrepo/default.nix index 281ff4cb18145..611949ae65159 100644 --- a/pkgs/development/python-modules/scmrepo/default.nix +++ b/pkgs/development/python-modules/scmrepo/default.nix @@ -19,7 +19,7 @@ buildPythonPackage rec { pname = "scmrepo"; - version = "2.0.3"; + version = "2.1.1"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -28,7 +28,7 @@ buildPythonPackage rec { owner = "iterative"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-P+Mbf8adSvQPkUgnTSPrqzvHc6lR0ns2mJ0/x9YGPKs="; + hash = "sha256-KG7Y+1qqsgDwgRYsb3XbZnF6FduHJCAEizfuugBi0Go="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/scrap-engine/default.nix b/pkgs/development/python-modules/scrap-engine/default.nix index 2726f3675fc3a..785b7280c746f 100644 --- a/pkgs/development/python-modules/scrap-engine/default.nix +++ b/pkgs/development/python-modules/scrap-engine/default.nix @@ -6,11 +6,11 @@ buildPythonPackage rec { pname = "scrap_engine"; - version = "1.4.0"; + version = "1.4.1"; src = fetchPypi { inherit pname version; - hash = "sha256-5OlnBRFhjFAcVkuuKM5hpeRxi+uvjpzfdhp1+5Nx1IU="; + hash = "sha256-qxzbVYFcSKcL2HtMlH9epO/sCx9HckWAt/NyVD8QJBQ="; }; nativeBuildInputs = [ setuptools-scm ]; diff --git a/pkgs/development/python-modules/scs/default.nix b/pkgs/development/python-modules/scs/default.nix index 5e95bed4cbdb6..c1ca83ed4ba1a 100644 --- a/pkgs/development/python-modules/scs/default.nix +++ b/pkgs/development/python-modules/scs/default.nix @@ -41,6 +41,13 @@ buildPythonPackage rec { url = "https://github.com/bodono/scs-python/commit/dd17e2e5282ebe85f2df8a7c6b25cfdeb894970d.patch"; hash = "sha256-vSeSJeeu5Wx3RXPyB39YTo0RU8HtAojrUw85Q76/QzA="; }) + # fix test_solve_random_cone_prob on linux after scipy 1.12 update + # https://github.com/bodono/scs-python/pull/82 + (fetchpatch { + name = "scipy-1.12-fix.patch"; + url = "https://github.com/bodono/scs-python/commit/4baf4effdc2ce7ac2dd1beaf864f1a5292eb06c6.patch"; + hash = "sha256-U/F5MakwYZN5hCaeAkcCG38WQxX9mXy9OvhyEQqN038="; + }) ]; nativeBuildInputs = [ @@ -62,12 +69,6 @@ buildPythonPackage rec { nativeCheckInputs = [ pytestCheckHook ]; pythonImportsCheck = [ "scs" ]; - disabledTests = lib.lists.optional (stdenv.system == "x86_64-linux") [ - # `test/test_scs_rand.py` hang on "x86_64-linux" (https://github.com/NixOS/nixpkgs/pull/244532#pullrequestreview-1598095858) - "test_feasible" - "test_infeasibl" - "test_unbounded" - ]; meta = with lib; { description = "Python interface for SCS: Splitting Conic Solver"; diff --git a/pkgs/development/python-modules/seaborn/default.nix b/pkgs/development/python-modules/seaborn/default.nix index fef58d973ccfa..a296478b176ce 100644 --- a/pkgs/development/python-modules/seaborn/default.nix +++ b/pkgs/development/python-modules/seaborn/default.nix @@ -15,7 +15,7 @@ buildPythonPackage rec { pname = "seaborn"; - version = "0.13.0"; + version = "0.13.2"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -24,7 +24,7 @@ buildPythonPackage rec { owner = "mwaskom"; repo = "seaborn"; rev = "refs/tags/v${version}"; - hash = "sha256-RbtBNKTjUHdCFe1V7IvACgbSNIPhVFMYmtE34GKVIzs="; + hash = "sha256-aGIVcdG/XN999nYBHh3lJqGa3QVt0j8kmzaxdkULznY="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/securetar/default.nix b/pkgs/development/python-modules/securetar/default.nix index 8b28d3ef815f0..6636bb50ae331 100644 --- a/pkgs/development/python-modules/securetar/default.nix +++ b/pkgs/development/python-modules/securetar/default.nix @@ -4,22 +4,27 @@ , fetchFromGitHub , pytestCheckHook , pythonOlder +, setuptools }: buildPythonPackage rec { pname = "securetar"; - version = "2023.3.0"; - format = "setuptools"; + version = "2023.12.0"; + pyproject = true; disabled = pythonOlder "3.9"; src = fetchFromGitHub { owner = "pvizeli"; - repo = pname; + repo = "securetar"; rev = "refs/tags/${version}"; - hash = "sha256-3bDboggvKbpWyjpUOrUmtJx3Nj/6Uvut2nEQLYJubDA="; + hash = "sha256-P8aq1RRlEmXhJ4n0TSLVjYx4dvkckuz2aDGkAvp7bfo="; }; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ cryptography ]; diff --git a/pkgs/development/python-modules/selenium/default.nix b/pkgs/development/python-modules/selenium/default.nix index 5a5c4304c636a..09ddebebe2407 100644 --- a/pkgs/development/python-modules/selenium/default.nix +++ b/pkgs/development/python-modules/selenium/default.nix @@ -34,7 +34,7 @@ buildPythonPackage rec { ''; postInstall = '' - DST_PREFIX=$out/lib/${python.libPrefix}/site-packages/selenium/webdriver/ + DST_PREFIX=$out/${python.sitePackages}/selenium/webdriver/ DST_REMOTE=$DST_PREFIX/remote/ DST_FF=$DST_PREFIX/firefox cp ../rb/lib/selenium/webdriver/atoms/getAttribute.js $DST_REMOTE diff --git a/pkgs/development/python-modules/sense-energy/default.nix b/pkgs/development/python-modules/sense-energy/default.nix index 35c0b4b6f4f86..cc91f276c0e7e 100644 --- a/pkgs/development/python-modules/sense-energy/default.nix +++ b/pkgs/development/python-modules/sense-energy/default.nix @@ -1,6 +1,7 @@ { lib , buildPythonPackage , fetchFromGitHub +, setuptools , aiohttp , ciso8601 , async-timeout @@ -14,8 +15,8 @@ buildPythonPackage rec { pname = "sense-energy"; - version = "0.12.2"; - format = "setuptools"; + version = "0.12.3"; + pyproject = true; disabled = pythonOlder "3.7"; @@ -23,14 +24,18 @@ buildPythonPackage rec { owner = "scottbonline"; repo = "sense"; rev = "refs/tags/${version}"; - hash = "sha256-OVFRM31LwHNeJUx+s/TN/1o4wvjMQEKaZEPI+y+S64s="; + hash = "sha256-aAPDYg5ttOAkKF5c1ft2apIQoReh4t22+78PtmLZNlI="; }; postPatch = '' substituteInPlace setup.py \ - --replace "{{VERSION_PLACEHOLDER}}" "${version}" + --replace-fail "{{VERSION_PLACEHOLDER}}" "${version}" ''; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ aiohttp async-timeout diff --git a/pkgs/development/python-modules/sentence-splitter/default.nix b/pkgs/development/python-modules/sentence-splitter/default.nix index 7e7891433cd7e..38ebc7fd6e2e7 100644 --- a/pkgs/development/python-modules/sentence-splitter/default.nix +++ b/pkgs/development/python-modules/sentence-splitter/default.nix @@ -37,6 +37,6 @@ buildPythonPackage rec { description = "Text to sentence splitter using heuristic algorithm by Philipp Koehn and Josh Schroeder"; homepage = "https://github.com/mediacloud/sentence-splitter"; license = licenses.lgpl3Plus; - maintainers = with maintainers; [ paveloom ]; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/development/python-modules/sentry-sdk/default.nix b/pkgs/development/python-modules/sentry-sdk/default.nix index a4027953796bc..11d1df937702a 100644 --- a/pkgs/development/python-modules/sentry-sdk/default.nix +++ b/pkgs/development/python-modules/sentry-sdk/default.nix @@ -37,7 +37,7 @@ buildPythonPackage rec { pname = "sentry-sdk"; - version = "1.39.0"; + version = "1.39.2"; pyproject = true; disabled = pythonOlder "3.7"; @@ -46,7 +46,7 @@ buildPythonPackage rec { owner = "getsentry"; repo = "sentry-python"; rev = "refs/tags/${version}"; - hash = "sha256-tYfnQ6L91KrRCR32dgzcDtA7eO+LHRAHBklxU8cXkK8="; + hash = "sha256-MC+9w53fsC5XB7CR9SS+z4bu2GgxkqdeYWERhk8lhcA="; }; nativeBuildInputs = [ @@ -133,11 +133,12 @@ buildPythonPackage rec { disabledTests = [ # Issue with the asseration "test_auto_enabling_integrations_catches_import_error" + "test_default_release" ]; disabledTestPaths = [ # Varius integration tests fail every once in a while when we - # upgrade depencies, so don't bother testing them. + # upgrade dependencies, so don't bother testing them. "tests/integrations/" ] ++ lib.optionals (stdenv.buildPlatform != "x86_64-linux") [ # test crashes on aarch64 diff --git a/pkgs/development/python-modules/sfrbox-api/default.nix b/pkgs/development/python-modules/sfrbox-api/default.nix index 397fa31a8ca92..7d620eeda34ec 100644 --- a/pkgs/development/python-modules/sfrbox-api/default.nix +++ b/pkgs/development/python-modules/sfrbox-api/default.nix @@ -14,16 +14,16 @@ buildPythonPackage rec { pname = "sfrbox-api"; - version = "0.0.8"; - format = "pyproject"; + version = "0.0.9"; + pyproject = true; disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "hacf-fr"; - repo = pname; + repo = "sfrbox-api"; rev = "refs/tags/v${version}"; - hash = "sha256-yvVoWBupHRbMoXmun/pj0bPpujWKfH1SknEhvgIsPzk="; + hash = "sha256-rMfX9vA8IuWxXvVs4WYNHO6neeoie/3gABwhXyJoAF8="; }; postPatch = '' @@ -36,17 +36,22 @@ buildPythonPackage rec { ]; propagatedBuildInputs = [ - click defusedxml httpx pydantic ]; + passthru.optional-dependencies = { + cli = [ + click + ]; + }; + nativeCheckInputs = [ pytest-asyncio pytestCheckHook respx - ]; + ] ++ lib.flatten (builtins.attrValues passthru.optional-dependencies); pythonImportsCheck = [ "sfrbox_api" diff --git a/pkgs/development/python-modules/sharp-aquos-rc/default.nix b/pkgs/development/python-modules/sharp-aquos-rc/default.nix new file mode 100644 index 0000000000000..5dc7580467e87 --- /dev/null +++ b/pkgs/development/python-modules/sharp-aquos-rc/default.nix @@ -0,0 +1,36 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, setuptools +, pyyaml +}: + +buildPythonPackage rec { + pname = "sharp-aquos-rc"; + version = "0.4"; + pyproject = true; + + src = fetchFromGitHub { + owner = "jmoore987"; + repo = "sharp_aquos_rc"; + rev = "refs/tags/${version}"; + hash = "sha256-w/XA58iT/pmNCy9up5fayjxBsevzgr8ImKgPiNtYHAM="; + }; + + nativeBuildInputs = [ setuptools ]; + + propagatedBuildInputs = [ pyyaml ]; + + # No tests + doCheck = false; + + pythonImportsCheck = [ "sharp_aquos_rc" ]; + + meta = with lib; { + homepage = "https://github.com/jmoore987/sharp_aquos_rc"; + description = "Control Sharp Aquos SmartTVs through the IP interface"; + changelog = "https://github.com/jmoore987/sharp_aquos_rc/releases/tag/${version}"; + maintainers = with maintainers; [ jamiemagee ]; + license = licenses.mit; + }; +} diff --git a/pkgs/development/python-modules/sigstore/default.nix b/pkgs/development/python-modules/sigstore/default.nix index ae64e1eb057bc..24322a18723e2 100644 --- a/pkgs/development/python-modules/sigstore/default.nix +++ b/pkgs/development/python-modules/sigstore/default.nix @@ -1,27 +1,23 @@ { lib +, appdirs , buildPythonPackage +, cryptography , fetchFromGitHub - -# build-system , flit-core - -# dependencies -, appdirs -, cryptography , id , importlib-resources +, pretend , pydantic , pyjwt , pyopenssl +, pytestCheckHook , requests , rich , securesystemslib , sigstore-protobuf-specs , sigstore-rekor-types , tuf - -# tests -, pytestCheckHook +, pythonOlder }: buildPythonPackage rec { @@ -29,10 +25,12 @@ buildPythonPackage rec { version = "2.1.0"; pyproject = true; + disabled = pythonOlder "3.8"; + src = fetchFromGitHub { owner = "sigstore"; repo = "sigstore-python"; - rev = "v${version}"; + rev = "refs/tags/v${version}"; hash = "sha256-WH6Pme8ZbfW5xqBT056eVJ3HZP1D/lAULtyN6k0uMaA="; }; @@ -57,17 +55,35 @@ buildPythonPackage rec { ]; nativeCheckInputs = [ + pretend pytestCheckHook ]; + preCheck = '' + export HOME=$(mktemp -d) + ''; + pythonImportsCheck = [ "sigstore" ]; + disabledTests = [ + # Tests require network access + "test_fail_init_url" + "test_get_identity_token_bad_code" + "test_identity_proof_claim_lookup" + "test_init_url" + "test_production" + "test_sct_verify_keyring" + "test_sign_rekor_entry_consistent" + "test_verification_materials_retrieves_rekor_entry" + "test_verifier" + ]; + meta = with lib; { description = "A codesigning tool for Python packages"; homepage = "https://github.com/sigstore/sigstore-python"; - changelog = "https://github.com/sigstore/sigstore-python/blob/${src.rev}/CHANGELOG.md"; + changelog = "https://github.com/sigstore/sigstore-python/blob/${version}/CHANGELOG.md"; license = licenses.asl20; maintainers = with maintainers; [ ]; }; diff --git a/pkgs/development/python-modules/simplemma/default.nix b/pkgs/development/python-modules/simplemma/default.nix index 4c70b8a8df19e..60cb7438e9fbb 100644 --- a/pkgs/development/python-modules/simplemma/default.nix +++ b/pkgs/development/python-modules/simplemma/default.nix @@ -32,6 +32,6 @@ buildPythonPackage rec { description = "Simple multilingual lemmatizer for Python, especially useful for speed and efficiency"; homepage = "https://github.com/adbar/simplemma"; license = licenses.mit; - maintainers = with maintainers; [ paveloom ]; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/development/python-modules/simplisafe-python/default.nix b/pkgs/development/python-modules/simplisafe-python/default.nix index 59a24e96feb01..f417a5f6368d4 100644 --- a/pkgs/development/python-modules/simplisafe-python/default.nix +++ b/pkgs/development/python-modules/simplisafe-python/default.nix @@ -20,7 +20,7 @@ buildPythonPackage rec { pname = "simplisafe-python"; - version = "2023.12.0"; + version = "2024.01.0"; pyproject = true; disabled = pythonOlder "3.10"; @@ -29,7 +29,7 @@ buildPythonPackage rec { owner = "bachya"; repo = "simplisafe-python"; rev = "refs/tags/${version}"; - hash = "sha256-Nr4HvjIOLk/WMKCjj/ZX67OBSImRhs9SfZtLjFs81Sk="; + hash = "sha256-ewbR2FI0t2F8HF0ZL5omsclB9OPAjHygGLPtSkVlvgM="; }; diff --git a/pkgs/development/python-modules/sip/default.nix b/pkgs/development/python-modules/sip/default.nix index 4053e20a08d09..c36e3acc30ea3 100644 --- a/pkgs/development/python-modules/sip/default.nix +++ b/pkgs/development/python-modules/sip/default.nix @@ -9,17 +9,18 @@ , ply , toml , tomli +, poppler-qt5 }: buildPythonPackage rec { pname = "sip"; - version = "6.8.0"; + version = "6.8.1"; format = "pyproject"; src = fetchPypi { inherit pname version; - hash = "sha256-LtGQSCDLZhtyB+sdzPrr7BpUY9ytkDukSK0ZRVAtCJw="; + hash = "sha256-MALfQV4WisP/45OULbxxMcuCreUAAOFSb0aoit4m9Zg="; }; nativeBuildInputs = [ @@ -36,6 +37,10 @@ buildPythonPackage rec { pythonImportsCheck = [ "sipbuild" ]; + passthru.tests = { + inherit poppler-qt5; + }; + meta = with lib; { description = "Creates C++ bindings for Python modules"; homepage = "https://riverbankcomputing.com/"; diff --git a/pkgs/development/python-modules/slpp/default.nix b/pkgs/development/python-modules/slpp/default.nix index d52ac84dad7a4..74dbfcc834cde 100644 --- a/pkgs/development/python-modules/slpp/default.nix +++ b/pkgs/development/python-modules/slpp/default.nix @@ -36,6 +36,6 @@ buildPythonPackage rec { description = "Simple lua-python parser"; homepage = "https://github.com/SirAnthony/slpp"; license = licenses.mit; - maintainers = with maintainers; [ paveloom ]; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/development/python-modules/snakemake-interface-common/default.nix b/pkgs/development/python-modules/snakemake-interface-common/default.nix index bccad271d4a1c..7b3cfd7912192 100644 --- a/pkgs/development/python-modules/snakemake-interface-common/default.nix +++ b/pkgs/development/python-modules/snakemake-interface-common/default.nix @@ -8,14 +8,14 @@ buildPythonPackage rec { pname = "snakemake-interface-common"; - version = "1.15.0"; + version = "1.15.3"; format = "pyproject"; src = fetchFromGitHub { owner = "snakemake"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-Rf2eMkRvkTCR2swB53ekjv8U8DzTPgjhIkBVrn6gTTI="; + hash = "sha256-MiwdNr8+xX5oD1ilhDDhJcf4wWnfkayDMcnDyjYSWlo="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/snakemake-interface-executor-plugins/default.nix b/pkgs/development/python-modules/snakemake-interface-executor-plugins/default.nix index 358fdd6141637..38b42fc9d1e87 100644 --- a/pkgs/development/python-modules/snakemake-interface-executor-plugins/default.nix +++ b/pkgs/development/python-modules/snakemake-interface-executor-plugins/default.nix @@ -9,14 +9,14 @@ buildPythonPackage rec { pname = "snakemake-interface-executor-plugins"; - version = "8.1.3"; + version = "8.2.0"; format = "pyproject"; src = fetchFromGitHub { owner = "snakemake"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-QBLdqhR6WrO/zT0Ux5xcUtr5HbrDy91qiWuSjAA5c3E="; + hash = "sha256-ZkhayXWy83/INRH7FYwFkhgHL+nSj7ReYC9I97SEeTM="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/snowflake-connector-python/default.nix b/pkgs/development/python-modules/snowflake-connector-python/default.nix index 96efc55f2c4bc..d9b673ca49cd4 100644 --- a/pkgs/development/python-modules/snowflake-connector-python/default.nix +++ b/pkgs/development/python-modules/snowflake-connector-python/default.nix @@ -27,14 +27,14 @@ buildPythonPackage rec { pname = "snowflake-connector-python"; - version = "3.6.0"; + version = "3.7.0"; format = "pyproject"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-FWZ6kYeA152nVeamC79pGAUYVJUej1bM31aSKD6ahHk="; + hash = "sha256-sr+uxkBZMHsIyq2tQCFNSI/vtKI/zXVTrHX16nWKkWk="; }; # snowflake-connector-python requires arrow 10.0.1, which we don't have in diff --git a/pkgs/development/python-modules/social-auth-core/default.nix b/pkgs/development/python-modules/social-auth-core/default.nix index e92218f0dfea3..05c1e8988b386 100644 --- a/pkgs/development/python-modules/social-auth-core/default.nix +++ b/pkgs/development/python-modules/social-auth-core/default.nix @@ -19,7 +19,7 @@ buildPythonPackage rec { pname = "social-auth-core"; - version = "4.5.1"; + version = "4.5.2"; pyproject = true; disabled = pythonOlder "3.7"; @@ -28,7 +28,7 @@ buildPythonPackage rec { owner = "python-social-auth"; repo = "social-core"; rev = "refs/tags/${version}"; - hash = "sha256-yji10s3oHwUcKUs1njctkkmODyQRgiQDSRqolJFTifw="; + hash = "sha256-4oUSGTDNJc+qZRYiexRUaz8IOaZRXlwqswfPiEzTuR4="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/socialscan/default.nix b/pkgs/development/python-modules/socialscan/default.nix index db9cd3c1f8ca7..7a6cc52e35147 100644 --- a/pkgs/development/python-modules/socialscan/default.nix +++ b/pkgs/development/python-modules/socialscan/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "socialscan"; - version = "2.0.0"; + version = "2.0.1"; format = "setuptools"; disabled = pythonOlder "3.8"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "iojw"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-jiyTcpJ00DvfweChawj1ugdCVHHAdwDbHEp9jivH7gs="; + hash = "sha256-4JJVhB6x1NGagtfzE03Jae2GOr25hh+4l7gQ23zc7Ck="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/spglib/default.nix b/pkgs/development/python-modules/spglib/default.nix index 95d73246aab91..b7d172c93cfd7 100644 --- a/pkgs/development/python-modules/spglib/default.nix +++ b/pkgs/development/python-modules/spglib/default.nix @@ -19,12 +19,12 @@ buildPythonPackage rec { pname = "spglib"; - version = "2.1.0"; + version = "2.2.0"; format = "pyproject"; src = fetchPypi { inherit pname version; - hash = "sha256-gUNUX9/8EfvNpNcFpra81Iid6bw1JLeN+GajbdDeCks="; + hash = "sha256-Snxx9q24YMvhSs39bKQ9zSns2a7T84wCzXbagP+l0Bw="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/sphinx-comments/default.nix b/pkgs/development/python-modules/sphinx-comments/default.nix index 2ffed0c091fb3..77f5b79519c1b 100644 --- a/pkgs/development/python-modules/sphinx-comments/default.nix +++ b/pkgs/development/python-modules/sphinx-comments/default.nix @@ -1,19 +1,22 @@ { lib , buildPythonPackage , fetchPypi +, setuptools , sphinx }: buildPythonPackage rec { pname = "sphinx-comments"; version = "0.0.3"; - format = "pyproject"; + pyproject = true; src = fetchPypi { inherit pname version; sha256 = "00170afff27019fad08e421da1ae49c681831fb2759786f07c826e89ac94cf21"; }; + nativeBuildInputs = [ setuptools ]; + propagatedBuildInputs = [ sphinx ]; pythonImportsCheck = [ "sphinx_comments" ]; diff --git a/pkgs/development/python-modules/sphinx-markdown-parser/default.nix b/pkgs/development/python-modules/sphinx-markdown-parser/default.nix index dc9ab56ed3fc1..b67667ca804d0 100644 --- a/pkgs/development/python-modules/sphinx-markdown-parser/default.nix +++ b/pkgs/development/python-modules/sphinx-markdown-parser/default.nix @@ -1,24 +1,27 @@ -{ stdenv -, lib +{ lib +, stdenv , buildPythonPackage +, commonmark , fetchFromGitHub -, sphinx , markdown -, commonmark -, recommonmark , pydash +, pytestCheckHook +, pythonOlder , pyyaml +, recommonmark +, setuptools +, sphinx , unify , yapf -, python }: buildPythonPackage rec { pname = "sphinx-markdown-parser"; version = "0.2.4"; - format = "setuptools"; + pyproject = true; + + disabled = pythonOlder "3.8"; - # PyPi release does not include requirements.txt src = fetchFromGitHub { owner = "clayrisser"; repo = "sphinx-markdown-parser"; @@ -28,20 +31,44 @@ buildPythonPackage rec { sha256 = "0i0hhapmdmh83yx61lxi2h4bsmhnzddamz95844g2ghm132kw5mv"; }; - propagatedBuildInputs = [ sphinx markdown commonmark pydash pyyaml unify yapf recommonmark ]; + nativeBuildInputs = [ + setuptools + ]; + + propagatedBuildInputs = [ + commonmark + markdown + pydash + pyyaml + recommonmark + unify + yapf + ]; + + buildInputs = [ + sphinx + ]; - # Avoids running broken tests in test_markdown.py - checkPhase = '' - ${python.interpreter} -m unittest -v tests/test_basic.py tests/test_sphinx.py - ''; + nativeCheckInputs = [ + pytestCheckHook + ]; - pythonImportsCheck = [ "sphinx_markdown_parser" ]; + pythonImportsCheck = [ + "sphinx_markdown_parser" + ]; + + disabledTests = [ + # AssertionError + "test_heading" + "test_headings" + "test_integration" + ]; meta = with lib; { - broken = (stdenv.isLinux && stdenv.isAarch64) || stdenv.isDarwin; description = "Write markdown inside of docutils & sphinx projects"; homepage = "https://github.com/clayrisser/sphinx-markdown-parser"; license = licenses.mit; maintainers = with maintainers; [ FlorianFranzen ]; + broken = (stdenv.isLinux && stdenv.isAarch64) || stdenv.isDarwin; }; } diff --git a/pkgs/development/python-modules/sphinx-multitoc-numbering/default.nix b/pkgs/development/python-modules/sphinx-multitoc-numbering/default.nix index 33e346638e9cd..3c2940a0ad7ee 100644 --- a/pkgs/development/python-modules/sphinx-multitoc-numbering/default.nix +++ b/pkgs/development/python-modules/sphinx-multitoc-numbering/default.nix @@ -2,25 +2,38 @@ , buildPythonPackage , fetchPypi , sphinx +, pythonOlder +, setuptools }: buildPythonPackage rec { pname = "sphinx-multitoc-numbering"; version = "0.1.3"; - format = "pyproject"; + pyproject = true; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "c9607671ac511236fa5d61a7491c1031e700e8d498c9d2418e6c61d1251209ae"; + hash = "sha256-yWB2caxREjb6XWGnSRwQMecA6NSYydJBjmxh0SUSCa4="; }; - propagatedBuildInputs = [ sphinx ]; + nativeBuildInputs = [ + setuptools + ]; + + propagatedBuildInputs = [ + sphinx + ]; - pythonImportsCheck = [ "sphinx_multitoc_numbering" ]; + pythonImportsCheck = [ + "sphinx_multitoc_numbering" + ]; meta = with lib; { description = "Supporting continuous HTML section numbering"; homepage = "https://github.com/executablebooks/sphinx-multitoc-numbering"; + changelog = "https://github.com/executablebooks/sphinx-multitoc-numbering/blob/v${version}/CHANGELOG.md"; license = licenses.mit; maintainers = with maintainers; [ marsam ]; }; diff --git a/pkgs/development/python-modules/sphinx-notfound-page/default.nix b/pkgs/development/python-modules/sphinx-notfound-page/default.nix index e9f5d9c4519dc..0621c2867d03f 100644 --- a/pkgs/development/python-modules/sphinx-notfound-page/default.nix +++ b/pkgs/development/python-modules/sphinx-notfound-page/default.nix @@ -3,6 +3,7 @@ , fetchFromGitHub , flit-core , pythonImportsCheckHook +, pythonOlder # documentation build dependencies , sphinxHook , sphinx-prompt @@ -12,18 +13,25 @@ , sphinxemoji # runtime dependencies , sphinx +, setuptools }: buildPythonPackage rec { pname = "sphinx-notfound-page"; version = "1.0.0"; - format = "pyproject"; - outputs = [ "out" "doc" ]; + pyproject = true; + + disabled = pythonOlder "3.8"; + + outputs = [ + "out" + "doc" + ]; src = fetchFromGitHub { owner = "readthedocs"; repo = "sphinx-notfound-page"; - rev = version; + rev = "refs/tags/${version}"; hash = "sha256-tG71UuYbdlWNgq6Y5xRH3aWc9/eTr/RlsRNWSUjrbBE="; }; @@ -38,13 +46,22 @@ buildPythonPackage rec { sphinxemoji ]; - propagatedBuildInputs = [ sphinx ]; + buildInputs = [ + sphinx + ]; - pythonImportsCheck = [ "notfound" ]; + propagatedBuildInputs = [ + setuptools + ]; + + pythonImportsCheck = [ + "notfound" + ]; meta = with lib; { description = "A sphinx extension to create a custom 404 page with absolute URLs hardcoded"; homepage = "https://github.com/readthedocs/sphinx-notfound-page"; + changelog = "https://github.com/readthedocs/sphinx-notfound-page/blob/${version}/CHANGELOG.rst"; license = licenses.mit; maintainers = with maintainers; [ kaction ]; }; diff --git a/pkgs/development/python-modules/sphinx-version-warning/default.nix b/pkgs/development/python-modules/sphinx-version-warning/default.nix index 1fb89f3a28490..7561fcd0dba56 100644 --- a/pkgs/development/python-modules/sphinx-version-warning/default.nix +++ b/pkgs/development/python-modules/sphinx-version-warning/default.nix @@ -3,13 +3,15 @@ , fetchFromGitHub , fetchpatch , pythonImportsCheckHook +, pythonOlder +, setuptools , sphinx -, sphinxHook , sphinx-autoapi +, sphinx-prompt , sphinx-rtd-theme , sphinx-tabs -, sphinx-prompt , sphinxemoji +, sphinxHook }: # Latest tagged release release "1.1.2" (Nov 2018) does not contain @@ -18,9 +20,14 @@ buildPythonPackage { pname = "sphinx-version-warning"; version = "unstable-2019-08-10"; - format = "pyproject"; + pyproject = true; + + disabled = pythonOlder "3.7"; - outputs = [ "out" "doc" ]; + outputs = [ + "out" + "doc" + ]; src = fetchFromGitHub { owner = "humitos"; @@ -40,21 +47,27 @@ buildPythonPackage { nativeBuildInputs = [ pythonImportsCheckHook - sphinxHook sphinx-autoapi + sphinx-prompt sphinx-rtd-theme sphinx-tabs - sphinx-prompt sphinxemoji + sphinxHook + setuptools ]; - propagatedBuildInputs = [ sphinx ]; + buildInputs = [ + sphinx + ]; - pythonImportsCheck = [ "versionwarning" ]; + pythonImportsCheck = [ + "versionwarning" + ]; meta = with lib; { description = "A sphinx extension to show a warning banner at the top of your documentation"; homepage = "https://github.com/humitos/sphinx-version-warning"; + changelog = "https://github.com/humitos/sphinx-version-warning/blob/${version}/CHANGELOG.rst"; license = licenses.mit; maintainers = with maintainers; [ kaction ]; }; diff --git a/pkgs/development/python-modules/sphinxcontrib-apidoc/default.nix b/pkgs/development/python-modules/sphinxcontrib-apidoc/default.nix index 3945f8bf4c4f3..327ff267eebc8 100644 --- a/pkgs/development/python-modules/sphinxcontrib-apidoc/default.nix +++ b/pkgs/development/python-modules/sphinxcontrib-apidoc/default.nix @@ -2,12 +2,13 @@ , buildPythonPackage , fetchPypi , pbr +, setuptools }: buildPythonPackage rec { pname = "sphinxcontrib-apidoc"; version = "0.4.0"; - format = "setuptools"; + pyproject = true; src = fetchPypi { inherit pname version; @@ -19,8 +20,9 @@ buildPythonPackage rec { rm test-requirements.txt requirements.txt ''; - propagatedBuildInputs = [ + nativeBuildInputs = [ pbr + setuptools ]; # Check is disabled due to circular dependency of sphinx diff --git a/pkgs/development/python-modules/sphinxcontrib-confluencebuilder/default.nix b/pkgs/development/python-modules/sphinxcontrib-confluencebuilder/default.nix index dc7798015cb75..6b282371f22b7 100644 --- a/pkgs/development/python-modules/sphinxcontrib-confluencebuilder/default.nix +++ b/pkgs/development/python-modules/sphinxcontrib-confluencebuilder/default.nix @@ -10,13 +10,13 @@ buildPythonPackage rec { pname = "sphinxcontrib-confluencebuilder"; - version = "2.3.0"; + version = "2.4.0"; format = "pyproject"; src = fetchPypi { pname = "sphinxcontrib_confluencebuilder"; inherit version; - hash = "sha256-Zpe2n131afnq4IhQEEZtquvSEkkjv/uznXt2tQhGfZA="; + hash = "sha256-q3+GwMVWMRu4eWwbdXcbPQzpBhBXcZEMFTpbEO+teLk="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/splinter/default.nix b/pkgs/development/python-modules/splinter/default.nix index 6b60d2f3ad2ca..95ad23ec85c21 100644 --- a/pkgs/development/python-modules/splinter/default.nix +++ b/pkgs/development/python-modules/splinter/default.nix @@ -1,6 +1,6 @@ { lib , buildPythonPackage -, isPy27 +, pythonOlder , fetchFromGitHub , setuptools , urllib3 @@ -15,9 +15,9 @@ buildPythonPackage rec { pname = "splinter"; - version = "0.20.1"; + version = "0.21.0"; - disabled = isPy27; + disabled = pythonOlder "3.8"; pyproject = true; @@ -25,7 +25,7 @@ buildPythonPackage rec { owner = "cobrateam"; repo = "splinter"; rev = "refs/tags/${version}"; - hash = "sha256-6oHcHIkqOr0aFNfCNjZpm4zIYuz2ov9drfCxSdjAg7o="; + hash = "sha256-PGGql8yI1YosoUBAyDoI/8k7s4sVYnXEV7eow3GHH88="; }; nativeBuildInputs = [ @@ -75,6 +75,7 @@ buildPythonPackage rec { pythonImportsCheck = [ "splinter" ]; meta = with lib; { + changelog = "https://splinter.readthedocs.io/en/latest/news.html"; description = "Browser abstraction for web acceptance testing"; homepage = "https://github.com/cobrateam/splinter"; license = licenses.bsd3; diff --git a/pkgs/development/python-modules/spyse-python/default.nix b/pkgs/development/python-modules/spyse-python/default.nix index 0064454a1eaf8..56ffdfe8c080b 100644 --- a/pkgs/development/python-modules/spyse-python/default.nix +++ b/pkgs/development/python-modules/spyse-python/default.nix @@ -7,32 +7,23 @@ , pythonOlder , requests , responses +, setuptools }: buildPythonPackage rec { pname = "spyse-python"; version = "2.2.3"; - format = "setuptools"; + pyproject = true; disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "spyse-com"; - repo = pname; - rev = "v${version}"; - sha256 = "041k0037anwaxp2mh7mdk8rdsw9hdr3arigyyqfxfn35x8j41c3k"; + repo = "spyse-python"; + rev = "refs/tags/v${version}"; + hash = "sha256-c7BAJOplWNcd9v7FrEZuMHHdMpqtHljF7YpbdQYAMxA="; }; - propagatedBuildInputs = [ - requests - dataclasses-json - responses - limiter - ]; - - # Tests requires an API token - doCheck = false; - patches = [ # Update limiter import and rate limit, https://github.com/spyse-com/spyse-python/pull/11 (fetchpatch { @@ -45,11 +36,26 @@ buildPythonPackage rec { postPatch = '' substituteInPlace setup.py \ --replace "'dataclasses~=0.6'," "" \ + --replace "dataclasses-json~=0.5.4" "dataclasses-json>=0.5.4" \ --replace "responses~=0.13.3" "responses>=0.13.3" \ --replace "limiter~=0.1.2" "limiter>=0.1.2" \ --replace "requests~=2.26.0" "requests>=2.26.0" ''; + nativeBuildInputs = [ + setuptools + ]; + + propagatedBuildInputs = [ + requests + dataclasses-json + responses + limiter + ]; + + # Tests requires an API token + doCheck = false; + pythonImportsCheck = [ "spyse" ]; @@ -57,6 +63,7 @@ buildPythonPackage rec { meta = with lib; { description = "Python module for spyse.com API"; homepage = "https://github.com/spyse-com/spyse-python"; + changelog = "https://github.com/spyse-com/spyse-python/releases/tag/v${version}"; license = with licenses; [ mit ]; maintainers = with maintainers; [ fab ]; }; diff --git a/pkgs/development/python-modules/spython/default.nix b/pkgs/development/python-modules/spython/default.nix new file mode 100644 index 0000000000000..e5a2fdf161c89 --- /dev/null +++ b/pkgs/development/python-modules/spython/default.nix @@ -0,0 +1,59 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, setuptools +, pytestCheckHook +, pythonOlder +}: + +buildPythonPackage rec { + pname = "spython"; + version = "0.3.12"; + pyproject = true; + + disabled = pythonOlder "3.9"; + + src = fetchFromGitHub { + owner = "singularityhub"; + repo = "singularity-cli"; + rev = "refs/tags/${version}"; + hash = "sha256-fRtqOpDgVMYlVDwbPkrnpd7PT4fV+2WS6RmpJoxaKdQ="; + }; + + postPatch = '' + substituteInPlace setup.py \ + --replace '"pytest-runner"' "" + ''; + + nativeBuildInputs = [ + setuptools + ]; + + nativeCheckInputs = [ + pytestCheckHook + ]; + + pythonImportsCheck = [ + "spython" + ]; + + disabledTests = [ + # Assertion errors + "test_has_no_instances" + "test_check_install" + "test_check_get_singularity_version" + ]; + + disabledTestPaths = [ + # Tests are looking for something that doesn't exist + "spython/tests/test_client.py" + ]; + + meta = with lib; { + description = "Streamlined singularity python client (spython) for singularity"; + homepage = "https://github.com/singularityhub/singularity-cli"; + changelog = "https://github.com/singularityhub/singularity-cli/blob/${version}/CHANGELOG.md"; + license = licenses.mpl20; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/sqlalchemy/1_4.nix b/pkgs/development/python-modules/sqlalchemy/1_4.nix index 4deeb396bd0ca..06ffcab2ae322 100644 --- a/pkgs/development/python-modules/sqlalchemy/1_4.nix +++ b/pkgs/development/python-modules/sqlalchemy/1_4.nix @@ -45,6 +45,10 @@ buildPythonPackage rec { hash = "sha256-KhLSKlQ4xfSh1nsAt+cRO+adh2aj/h/iqV6YmDbz39k="; }; + postPatch = '' + sed -i '/tag_build = dev/d' setup.cfg + ''; + nativeBuildInputs = [ setuptools ]; diff --git a/pkgs/development/python-modules/sqlglot/default.nix b/pkgs/development/python-modules/sqlglot/default.nix index 76c6027fca4b1..f02a32d0f64f8 100644 --- a/pkgs/development/python-modules/sqlglot/default.nix +++ b/pkgs/development/python-modules/sqlglot/default.nix @@ -1,41 +1,56 @@ { lib , buildPythonPackage +, duckdb , fetchFromGitHub -, pythonOlder , pytestCheckHook , python-dateutil -, duckdb +, pythonOlder +, setuptools , setuptools-scm }: + buildPythonPackage rec { pname = "sqlglot"; - version = "17.14.2"; - format = "setuptools"; + version = "20.9.0"; + pyproject = true; disabled = pythonOlder "3.8"; src = fetchFromGitHub { repo = "sqlglot"; owner = "tobymao"; - rev = "v${version}"; - hash = "sha256-aImshQ5jf0k62ucpK4X8G7uHGAFQkhGgjMYo4mvSvew="; + rev = "refs/tags/v${version}"; + hash = "sha256-4czhmAJUDRj0x8dCmIXg5BQ1Uvie5vx+UtWdSSY5mnM="; }; - nativeBuildInputs = [ setuptools-scm ]; + nativeBuildInputs = [ + setuptools + setuptools-scm + ]; - # optional dependency used in the sqlglot optimizer - propagatedBuildInputs = [ python-dateutil ]; + propagatedBuildInputs = [ + # Optional dependency used in the sqlglot optimizer + python-dateutil + ]; - nativeCheckInputs = [ pytestCheckHook duckdb ]; + nativeCheckInputs = [ + pytestCheckHook + duckdb + ]; - # these integration tests assume a running Spark instance - disabledTestPaths = [ "tests/dataframe/integration" ]; + disabledTestPaths = [ + # These integration tests assume a running Spark instance + "tests/dataframe/integration" + ]; - pythonImportsCheck = [ "sqlglot" ]; + pythonImportsCheck = [ + "sqlglot" + ]; meta = with lib; { description = "A no dependency Python SQL parser, transpiler, and optimizer"; homepage = "https://github.com/tobymao/sqlglot"; + changelog = "https://github.com/tobymao/sqlglot/blob/v${version}/CHANGELOG.md"; license = licenses.mit; maintainers = with maintainers; [ cpcloud ]; }; diff --git a/pkgs/development/python-modules/sqlitedict/default.nix b/pkgs/development/python-modules/sqlitedict/default.nix index 41889bfce1377..eb11a9805c2fc 100644 --- a/pkgs/development/python-modules/sqlitedict/default.nix +++ b/pkgs/development/python-modules/sqlitedict/default.nix @@ -4,12 +4,16 @@ , py , pytest-benchmark , pytestCheckHook +, pythonOlder +, setuptools }: buildPythonPackage rec { pname = "sqlitedict"; version = "2.1.0"; - format = "setuptools"; + pyproject = true; + + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "RaRe-Technologies"; @@ -18,9 +22,9 @@ buildPythonPackage rec { hash = "sha256-GfvvkQ6a75UBPn70IFOvjvL1MedSc4siiIjA3IsQnic="; }; - preCheck = '' - mkdir tests/db - ''; + nativeBuildInputs = [ + setuptools + ]; nativeCheckInputs = [ py @@ -28,6 +32,14 @@ buildPythonPackage rec { pytestCheckHook ]; + preCheck = '' + mkdir tests/db + ''; + + pythonImportsCheck = [ + "sqlitedict" + ]; + pytestFlagsArray = [ "--benchmark-disable" ]; @@ -35,7 +47,8 @@ buildPythonPackage rec { meta = with lib; { description = "Persistent, thread-safe dict"; homepage = "https://github.com/RaRe-Technologies/sqlitedict"; + changelog = "https://github.com/piskvorky/sqlitedict/blob/v${version}/CHANGELOG.md"; license = licenses.asl20; - maintainers = [ maintainers.arnoldfarkas ]; + maintainers = with maintainers; [ arnoldfarkas ]; }; } diff --git a/pkgs/development/python-modules/starline/default.nix b/pkgs/development/python-modules/starline/default.nix index 3ec25b5061e8b..0496aad832614 100644 --- a/pkgs/development/python-modules/starline/default.nix +++ b/pkgs/development/python-modules/starline/default.nix @@ -2,13 +2,14 @@ , buildPythonPackage , pythonOlder , fetchPypi +, fetchpatch , setuptools , requests }: buildPythonPackage rec { pname = "starline"; - version = "0.2.0"; + version = "0.1.5"; disabled = pythonOlder "3.5"; @@ -16,9 +17,17 @@ buildPythonPackage rec { src = fetchPypi { inherit pname version; - hash = "sha256-VQsAq5XPWdkz93CKurQKTkHleQ5itlNHGv6Go68zIOY="; + hash = "sha256-F1P1/NKml2rtd1r7A/g5IVnwQMZzkXzAxjRRDZXBPLk="; }; + patches = [ + # https://github.com/Anonym-tsk/starline/pull/5 + (fetchpatch { + url = "https://github.com/Anonym-tsk/starline/commit/4e6cdf8e05c5fb8509ee384e77b39a2495587160.patch"; + hash = "sha256-y9b6ePH3IEgmt3ALHQGwH102rlm4KfmH4oIoIC93cWU="; + }) + ]; + nativeBuildInputs = [ setuptools ]; @@ -32,6 +41,9 @@ buildPythonPackage rec { pythonImportsCheck = [ "starline" ]; + # https://github.com/Anonym-tsk/starline/issues/4 + passthru.skipBulkUpdate = true; + meta = with lib; { description = "Unofficial python library for StarLine API"; homepage = "https://github.com/Anonym-tsk/starline"; diff --git a/pkgs/development/python-modules/stdlibs/default.nix b/pkgs/development/python-modules/stdlibs/default.nix index 443dc56aee112..677d282f06536 100644 --- a/pkgs/development/python-modules/stdlibs/default.nix +++ b/pkgs/development/python-modules/stdlibs/default.nix @@ -7,7 +7,7 @@ buildPythonPackage rec { pname = "stdlibs"; - version = "2023.12.15"; + version = "2024.1.28"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -16,7 +16,7 @@ buildPythonPackage rec { owner = "omnilib"; repo = "stdlibs"; rev = "refs/tags/v${version}"; - hash = "sha256-1Av10FNJkCC2XGNx1LDqd0GwiNPIDPXPFatW8+2XoaI="; + hash = "sha256-xf46ih7viVUKNIT1tLs5MQPNjNtQlQ2N9BJIGPt4Srk="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/stravalib/default.nix b/pkgs/development/python-modules/stravalib/default.nix index df64dbebab509..b6845b5dce4d3 100644 --- a/pkgs/development/python-modules/stravalib/default.nix +++ b/pkgs/development/python-modules/stravalib/default.nix @@ -1,57 +1,62 @@ { lib -, buildPythonPackage -, fetchPypi -, nose -, setuptools -, setuptools-scm -, wheel , arrow -, requests -, units +, buildPythonPackage +, fetchFromGitHub , pint -, pydantic +, pydantic_1 # use pydantic 2 on next release +, pythonOlder , pytz -, six +, requests +, responses +, setuptools +, setuptools-scm }: buildPythonPackage rec { pname = "stravalib"; version = "1.5"; - format = "pyproject"; + pyproject = true; - src = fetchPypi { - inherit pname version; - hash = "sha256-OEdMRg3KjUrXt/CgJgsUqa/sVFAE0JONNZg5MBKtxmY="; + disabled = pythonOlder "3.9"; + + src = fetchFromGitHub { + owner = "stravalib"; + repo = "stravalib"; + rev = "v${version}"; + hash = "sha256-EQcLDU9id/DpUZKMI9prCJC9zEK1CuhOtSB4FAWLg/g="; }; + postPatch = '' + # Remove on next release + sed -i 's/pydantic==1.10.9/pydantic/' pyproject.toml + ''; + nativeBuildInputs = [ setuptools setuptools-scm - wheel - ]; - - nativeCheckInputs = [ - nose ]; propagatedBuildInputs = [ arrow - requests - units pint - pydantic + pydantic_1 pytz - six + requests + responses ]; - # tests require network access - # testing strava api + # Tests require network access, testing strava API doCheck = false; + pythonImportsCheck = [ + "stravalib" + ]; + meta = with lib; { description = "Python library for interacting with Strava v3 REST API"; homepage = "https://github.com/stravalib/stravalib"; + changelog = "https://github.com/stravalib/stravalib/releases/tag/v${version}"; license = licenses.asl20; - maintainers = [ ]; + maintainers = with maintainers; [ sikmir ]; }; } diff --git a/pkgs/development/python-modules/strawberry-graphql/default.nix b/pkgs/development/python-modules/strawberry-graphql/default.nix index 194d942669ad6..8cdffc96759f0 100644 --- a/pkgs/development/python-modules/strawberry-graphql/default.nix +++ b/pkgs/development/python-modules/strawberry-graphql/default.nix @@ -42,7 +42,7 @@ buildPythonPackage rec { pname = "strawberry-graphql"; - version = "0.215.1"; + version = "0.217.1"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -51,7 +51,7 @@ buildPythonPackage rec { owner = "strawberry-graphql"; repo = "strawberry"; rev = "refs/tags/${version}"; - hash = "sha256-7jWG9bk7NN3BhpzS2fi7OkAsxL0446hnqiNqhwiBGHc="; + hash = "sha256-Rorbqh/YwBlrkVgS7rV5vb4n773V/EmGAMGP0fuF6V4="; }; patches = [ diff --git a/pkgs/development/python-modules/strct/default.nix b/pkgs/development/python-modules/strct/default.nix index 7244002d41694..061e2a90c07c8 100644 --- a/pkgs/development/python-modules/strct/default.nix +++ b/pkgs/development/python-modules/strct/default.nix @@ -1,5 +1,6 @@ { lib , fetchFromGitHub +, fetchpatch , buildPythonPackage , setuptools , pytestCheckHook @@ -18,11 +19,24 @@ buildPythonPackage rec { hash = "sha256-ctafvdfSOdp7tlCUYg7d5XTXR1qBcWvOVtGtNUnhYIw="; }; + patches = [ + # https://github.com/shaypal5/strct/pull/4 + (fetchpatch { + name = "fix-versioneer-on-python312.patch"; + url = "https://github.com/shaypal5/strct/commit/a1e5b6ca9045b52efdfdbb3c82e12a01e251d41b.patch"; + hash = "sha256-xXADCSIhq1ARny2twzrhR1J8LkMFWFl6tmGxrM8RvkU="; + }) + ]; + postPatch = '' substituteInPlace pytest.ini \ --replace \ "--cov" \ "#--cov" + + # configure correct version, which fails due to missing .git + substituteInPlace versioneer.py strct/_version.py \ + --replace '"0+unknown"' '"${version}"' ''; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/strenum/default.nix b/pkgs/development/python-modules/strenum/default.nix index b7d2661ce2c88..b3ae130af2705 100644 --- a/pkgs/development/python-modules/strenum/default.nix +++ b/pkgs/development/python-modules/strenum/default.nix @@ -1,14 +1,16 @@ { lib , buildPythonPackage , fetchFromGitHub +, fetchpatch , pytestCheckHook , pythonOlder +, setuptools }: buildPythonPackage rec { pname = "strenum"; version = "0.4.15"; - format = "setuptools"; + pyproject = true; disabled = pythonOlder "3.7"; @@ -19,6 +21,15 @@ buildPythonPackage rec { hash = "sha256-LrDLIWiV/zIbl7CwKh7DAy4LoLyY7+hfUu8nqduclnA="; }; + patches = [ + # Replace SafeConfigParser and readfp, https://github.com/milanmeu/aioaseko/pull/6 + (fetchpatch { + name = "replace-safeconfigparser.patch"; + url = "https://github.com/irgeek/StrEnum/commit/896bef1b7e4a50c8b53d90c8d2fb5c0164f08ecd.patch"; + hash = "sha256-dmmEzhy17huclo1wOubpBUDc2L7vqEU5b/6a5loM47A="; + }) + ]; + postPatch = '' substituteInPlace setup.py \ --replace '"pytest-runner"' "" @@ -26,6 +37,10 @@ buildPythonPackage rec { --replace " --cov=strenum --cov-report term-missing --black --pylint" "" ''; + nativeBuildInputs = [ + setuptools + ]; + nativeCheckInputs = [ pytestCheckHook ]; @@ -35,7 +50,7 @@ buildPythonPackage rec { ]; meta = with lib; { - description = "MOdule for enum that inherits from str"; + description = "Module for enum that inherits from str"; homepage = "https://github.com/irgeek/StrEnum"; changelog = "https://github.com/irgeek/StrEnum/releases/tag/v${version}"; license = with licenses; [ mit ]; diff --git a/pkgs/development/python-modules/stupidartnet/default.nix b/pkgs/development/python-modules/stupidartnet/default.nix new file mode 100644 index 0000000000000..6092682d2afec --- /dev/null +++ b/pkgs/development/python-modules/stupidartnet/default.nix @@ -0,0 +1,42 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, pytestCheckHook +, pythonOlder +, setuptools +}: + +buildPythonPackage rec { + pname = "stupidartnet"; + version = "1.4.0"; + pyproject = true; + + disabled = pythonOlder "3.8"; + + src = fetchFromGitHub { + owner = "cpvalente"; + repo = "stupidArtnet"; + rev = "refs/tags/${version}"; + hash = "sha256-2LfK63FJcdnXfDLuUzYNlspj1jmtw00S6el49cH+RRM="; + }; + + nativeBuildInputs = [ + setuptools + ]; + + nativeCheckInputs = [ + pytestCheckHook + ]; + + pythonImportsCheck = [ + "stupidArtnet" + ]; + + meta = with lib; { + description = "Library implementation of the Art-Net protocol"; + homepage = "https://github.com/cpvalente/stupidArtnet"; + changelog = "https://github.com/cpvalente/stupidArtnet/releases/tag/${version}"; + license = licenses.mit; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/subarulink/default.nix b/pkgs/development/python-modules/subarulink/default.nix index 603acb73884b4..9eeb7e99aaa0d 100644 --- a/pkgs/development/python-modules/subarulink/default.nix +++ b/pkgs/development/python-modules/subarulink/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "subarulink"; - version = "0.7.9"; + version = "0.7.10"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "G-Two"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-dRhZWV58tHoGpJ2bDWFov1timTHYnqTPILySauutyzg="; + hash = "sha256-OKZ55J294I3wPo2vL+wuMMCA4N1ejgtquA8Bf7wPiIs="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/subunit2sql/default.nix b/pkgs/development/python-modules/subunit2sql/default.nix index d52180a3d0c47..7955ed3d8d89a 100644 --- a/pkgs/development/python-modules/subunit2sql/default.nix +++ b/pkgs/development/python-modules/subunit2sql/default.nix @@ -7,6 +7,8 @@ , pbr , python-dateutil , stestr +, testresources +, testscenarios }: buildPythonPackage rec { @@ -29,6 +31,8 @@ buildPythonPackage rec { mock oslo-concurrency stestr + testresources + testscenarios ]; checkPhase = '' @@ -52,5 +56,7 @@ buildPythonPackage rec { homepage = "https://opendev.org/opendev/subunit2sql"; license = licenses.asl20; maintainers = teams.openstack.members; + # version 1.10.0 is incomptaible with oslo-db 14.0.0 + broken = true; }; } diff --git a/pkgs/development/python-modules/sudachidict/default.nix b/pkgs/development/python-modules/sudachidict/default.nix index 72826908612c7..41a359110474f 100644 --- a/pkgs/development/python-modules/sudachidict/default.nix +++ b/pkgs/development/python-modules/sudachidict/default.nix @@ -2,6 +2,7 @@ , fetchFromGitHub , sudachidict , setuptools +, sudachipy }: buildPythonPackage rec { @@ -33,6 +34,10 @@ buildPythonPackage rec { setuptools ]; + propagatedBuildInputs = [ + sudachipy + ]; + # we need to prepare some files before the build # https://github.com/WorksApplications/SudachiDict/blob/develop/package_python.sh preBuild = '' diff --git a/pkgs/development/python-modules/sudachipy/default.nix b/pkgs/development/python-modules/sudachipy/default.nix index bfaf9be85846b..3e3bd5b4adf65 100644 --- a/pkgs/development/python-modules/sudachipy/default.nix +++ b/pkgs/development/python-modules/sudachipy/default.nix @@ -10,6 +10,7 @@ , pytestCheckHook , sudachidict-core , tokenizers +, sudachipy }: buildPythonPackage rec { @@ -19,7 +20,7 @@ buildPythonPackage rec { cargoDeps = rustPlatform.fetchCargoTarball { inherit src; name = "${pname}-${version}"; - hash = "sha256-Am+ae2lgnndSDzf0GF8R1i6OPLdIlm2dLThqYqXbscA="; + hash = "sha256-ARwvThfATDdzBTjPFr9yjbE/0eYvp/TCZOEGbUupJmU="; }; nativeBuildInputs = [ @@ -37,6 +38,9 @@ buildPythonPackage rec { cd python ''; + # avoid infinite recursion due to sudachidict + doCheck = false; + nativeCheckInputs = [ pytestCheckHook sudachidict-core @@ -47,6 +51,20 @@ buildPythonPackage rec { "sudachipy" ]; + passthru = { + inherit (sudachi-rs) updateScript; + tests = { + pytest = sudachipy.overridePythonAttrs ( + _: { + doCheck = true; + # avoid catchConflicts of sudachipy + # we don't need to install this package since it is just a test + dontInstall = true; + } + ); + }; + }; + meta = sudachi-rs.meta // { homepage = "https://github.com/WorksApplications/sudachi.rs/tree/develop/python"; mainProgram = "sudachipy"; diff --git a/pkgs/development/python-modules/svg-py/default.nix b/pkgs/development/python-modules/svg-py/default.nix new file mode 100644 index 0000000000000..f2971a0b4144d --- /dev/null +++ b/pkgs/development/python-modules/svg-py/default.nix @@ -0,0 +1,49 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, flit-core +, pytestCheckHook +, pythonOlder +, pyyaml +}: + +buildPythonPackage rec { + pname = "svg-py"; + version = "1.4.2"; + pyproject = true; + + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "orsinium-labs"; + repo = "svg.py"; + rev = "refs/tags/${version}"; + hash = "sha256-GbXPDYDq6zlsPJ/PAjR6OvarVrp7x3LGhseyTMwY8Dg="; + }; + + nativeBuildInputs = [ + flit-core + ]; + + nativeCheckInputs = [ + pytestCheckHook + pyyaml + ]; + + pythonImportsCheck = [ + "svg" + ]; + + disabledTestPaths = [ + # Tests need additional files + "tests/test_attributes.py" + ]; + + meta = with lib; { + description = "Type-safe Python library to generate SVG files"; + homepage = "https://github.com/orsinium-labs/svg.py"; + changelog = "https://github.com/orsinium-labs/svg.py/releases/tag/${version}"; + license = licenses.mit; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/svg2tikz/default.nix b/pkgs/development/python-modules/svg2tikz/default.nix index 257a901aa7209..7e24071c9c7c2 100644 --- a/pkgs/development/python-modules/svg2tikz/default.nix +++ b/pkgs/development/python-modules/svg2tikz/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "svg2tikz"; - version = "3.0.0"; + version = "3.0.1"; disabled = pythonOlder "3.7"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "xyz2tex"; repo = "svg2tikz"; rev = "refs/tags/v${version}"; - hash = "sha256-YnWkj4xvjGzpKQv+H+spage+dy+fC9fJkqsOaQ6C1Ho="; + hash = "sha256-hvGvJFxhu7llj+tFfZvz12dZ8QYjY7zcLzB5S44l+IM="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/svgutils/default.nix b/pkgs/development/python-modules/svgutils/default.nix new file mode 100644 index 0000000000000..ea2c7c547e437 --- /dev/null +++ b/pkgs/development/python-modules/svgutils/default.nix @@ -0,0 +1,40 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, setuptools +, lxml +, matplotlib +, pytestCheckHook +, nose +}: + +buildPythonPackage rec { + pname = "svgutils"; + version = "0.3.4"; + pyproject = true; + + src = fetchFromGitHub { + owner = "btel"; + repo = "svg_utils"; + rev = "refs/tags/v${version}"; + hash = "sha256-ITvZx+3HMbTyaRmCb7tR0LKqCxGjqDdV9/2taziUD0c="; + }; + + nativeBuildInputs = [ setuptools ]; + + propagatedBuildInputs = [ + lxml + matplotlib + ]; + + nativeCheckInputs = [ pytestCheckHook nose ]; + + pythonImportsCheck = [ "svgutils" ]; + + meta = with lib; { + description = "Python tools to create and manipulate SVG files"; + homepage = "https://github.com/btel/svg_utils"; + license = licenses.mit; + maintainers = with maintainers; [ bcdarwin ]; + }; +} diff --git a/pkgs/development/python-modules/switchbot-api/default.nix b/pkgs/development/python-modules/switchbot-api/default.nix new file mode 100644 index 0000000000000..32df6d5185ca4 --- /dev/null +++ b/pkgs/development/python-modules/switchbot-api/default.nix @@ -0,0 +1,45 @@ +{ lib +, aiohttp +, buildPythonPackage +, fetchFromGitHub +, poetry-core +, pythonOlder +}: + +buildPythonPackage rec { + pname = "switchbot-api"; + version = "2.0.0"; + pyproject = true; + + disabled = pythonOlder "3.10"; + + src = fetchFromGitHub { + owner = "SeraphicCorp"; + repo = "py-switchbot-api"; + rev = "refs/tags/v${version}"; + hash = "sha256-QM8oVfd+hdVNdhOgI3ujyY82Im0Yr5Nl+OcqzEtZ7XE="; + }; + + nativeBuildInputs = [ + poetry-core + ]; + + propagatedBuildInputs = [ + aiohttp + ]; + + # Module has no tests + doCheck= false; + + pythonImportsCheck = [ + "switchbot_api" + ]; + + meta = with lib; { + description = "An asynchronous library to use Switchbot API"; + homepage = "https://github.com/SeraphicCorp/py-switchbot-api"; + changelog = "https://github.com/SeraphicCorp/py-switchbot-api/releases/tag/v${version}"; + license = licenses.mit; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/syncedlyrics/default.nix b/pkgs/development/python-modules/syncedlyrics/default.nix index 48e2f79ef2d5f..f0e4fb97c6ba0 100644 --- a/pkgs/development/python-modules/syncedlyrics/default.nix +++ b/pkgs/development/python-modules/syncedlyrics/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "syncedlyrics"; - version = "0.7.0"; + version = "0.8.0"; pyproject = true; disabled = pythonOlder "3.8"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "rtcq"; repo = "syncedlyrics"; rev = "refs/tags/v${version}"; - hash = "sha256-qZVUptmLouFFBCWiRviYFO0sQKlyz65GjWMg/b1idXY="; + hash = "sha256-ro9HzI8N7Ry4xh91mO1Vyy3CScEi3FifweOO01/Ti0w="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/synologydsm-api/default.nix b/pkgs/development/python-modules/synologydsm-api/default.nix index e86361979c1b8..52dc544acb4df 100644 --- a/pkgs/development/python-modules/synologydsm-api/default.nix +++ b/pkgs/development/python-modules/synologydsm-api/default.nix @@ -4,6 +4,7 @@ , fetchFromGitHub , fetchpatch , poetry-core +, pythonRelaxDepsHook , requests , urllib3 , pytestCheckHook @@ -13,7 +14,7 @@ buildPythonPackage rec { pname = "synologydsm-api"; version = "1.0.2"; - format = "pyproject"; + pyproject = true; disabled = pythonOlder "3.7"; @@ -21,7 +22,7 @@ buildPythonPackage rec { owner = "hacf-fr"; repo = "synologydsm-api"; rev = "v${version}"; - sha256 = "0gyahf1x6i6j9pslh1y3pyh3si5jvxb06r1w761b9gsxyk14y1si"; + hash = "sha256-UQdPwvRdv7SCOTxkA1bfskQ9oL/DB0j1TdJE04ODyj8="; }; patches = [ @@ -29,12 +30,17 @@ buildPythonPackage rec { (fetchpatch { name = "switch-to-poetry-core.patch"; url = "https://github.com/hacf-fr/synologydsm-api/commit/f1ea2be927388bdff6d43d09027b82a854635e34.patch"; - sha256 = "120pdgp2i4ds6y3rf9j372f9zdcf4y8rsgl1xjbkgdhkp76bkkgr"; + hash = "sha256-+c25zLkTtjeX7IE+nZEnjrWfnDhDJpeHN7qRKO5rF4g="; }) ]; nativeBuildInputs = [ poetry-core + pythonRelaxDepsHook + ]; + + pythonRelaxDeps = [ + "urllib3" ]; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/tabcmd/default.nix b/pkgs/development/python-modules/tabcmd/default.nix index 6179680068434..3958ace5aacf7 100644 --- a/pkgs/development/python-modules/tabcmd/default.nix +++ b/pkgs/development/python-modules/tabcmd/default.nix @@ -1,39 +1,69 @@ { lib +, appdirs +, argparse , buildPythonPackage -, python3 -, pythonOlder +, doit , fetchPypi , ftfy -, appdirs +, mock +, pyinstaller-versionfile +, pytestCheckHook +, python3 +, pythonOlder , requests +, pythonRelaxDepsHook +, setuptools , setuptools-scm -, types-mock +, tableauserverclient , types-appdirs +, types-mock , types-requests , types-setuptools -, argparse -, doit -, pyinstaller-versionfile -, tableauserverclient -, pytestCheckHook -, mock +, urllib3 }: buildPythonPackage rec { pname = "tabcmd"; version = "2.0.12"; - format = "setuptools"; + pyproject = true; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-nsQJWDzSzSc1WRk5TBl/E7Mpfk8wGD1CsETAWILKxCM="; + hash = "sha256-nsQJWDzSzSc1WRk5TBl/E7Mpfk8wGD1CsETAWILKxCM="; }; - propagatedBuildInputs = [ ftfy appdirs requests setuptools-scm types-mock types-appdirs argparse doit pyinstaller-versionfile types-requests types-setuptools tableauserverclient ]; + pythonRelaxDeps = [ + "tableauserverclient" + "urllib3" + ]; + + nativeBuildInputs = [ + pythonRelaxDepsHook + setuptools + ]; + + propagatedBuildInputs = [ + appdirs + argparse + doit + ftfy + pyinstaller-versionfile + requests + setuptools-scm + tableauserverclient + types-appdirs + types-mock + types-requests + types-setuptools + urllib3 + ]; - nativeCheckInputs = [ pytestCheckHook mock ]; + nativeCheckInputs = [ + mock + pytestCheckHook + ]; # Remove an unneeded dependency that can't be resolved prePatch = '' @@ -58,10 +88,11 @@ buildPythonPackage rec { ''; - meta = { + meta = with lib; { description = "A command line client for working with Tableau Server."; - homepage = "https://pypi.org/project/tabcmd/"; - license = lib.licenses.mit; - maintainers = with lib.maintainers; [ ]; + homepage = "https://github.com/tableau/tabcmd"; + changelog = "https://github.com/tableau/tabcmd/releases/tag/v${version}"; + license = licenses.mit; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/development/python-modules/tableauserverclient/default.nix b/pkgs/development/python-modules/tableauserverclient/default.nix index 6bcdde6c73904..3ddf8c9a2d15c 100644 --- a/pkgs/development/python-modules/tableauserverclient/default.nix +++ b/pkgs/development/python-modules/tableauserverclient/default.nix @@ -1,26 +1,44 @@ { lib , buildPythonPackage -, fetchPypi , defusedxml -, requests +, fetchPypi , packaging -, requests-mock , pytestCheckHook , pythonOlder +, pythonRelaxDepsHook +, requests +, requests-mock +, setuptools +, versioneer }: buildPythonPackage rec { pname = "tableauserverclient"; - version = "0.28"; - format = "setuptools"; + version = "0.30"; + pyproject = true; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-jSblDVkuuBBZ7GmPKUYji8wtRoPS7g8r6Ye9EpnjvKA="; + hash = "sha256-MIE6V84xLEbgmTwvP6jQC0H//gBnMTO1sowL1HIMbpQ="; }; + postPatch = '' + # Remove vendorized versioneer + rm versioneer.py + ''; + + pythonRelaxDeps = [ + "urllib3" + ]; + + nativeBuildInputs = [ + setuptools + pythonRelaxDepsHook + versioneer + ]; + propagatedBuildInputs = [ defusedxml requests diff --git a/pkgs/development/python-modules/tables/default.nix b/pkgs/development/python-modules/tables/default.nix index 56cb2898bf1f4..70a6f86231e8b 100644 --- a/pkgs/development/python-modules/tables/default.nix +++ b/pkgs/development/python-modules/tables/default.nix @@ -1,6 +1,5 @@ { lib , fetchPypi -, fetchpatch , buildPythonPackage , pythonOlder , blosc2 @@ -23,7 +22,7 @@ buildPythonPackage rec { pname = "tables"; version = "3.9.2"; - pyproject = true; + format = "setuptools"; disabled = pythonOlder "3.8"; @@ -32,20 +31,6 @@ buildPythonPackage rec { hash = "sha256-1HAmPC5QxLfIY1oNmawf8vnnBMJNceX6M8RSnn0K2cM="; }; - patches = [ - (fetchpatch { - name = "numpy-1.25-compatibility.patch"; - url = "https://github.com/PyTables/PyTables/commit/337792561e5924124efd20d6fea6bbbd2428b2aa.patch"; - hash = "sha256-pz3A/jTPWXXlzr+Yl5PRUvdSAinebFsoExfek4RUHkc="; - }) - (fetchpatch { - name = "numexpr-2.8.5-compatibility.patch"; - url = "https://github.com/PyTables/PyTables/commit/1a235490ebe1a138da1139cfa19829b5f0a2af37.patch"; - includes = [ "tables/tests/test_queries.py" ]; - hash = "sha256-uMS+Z2Zcz68ILMQaBdIDMnCyasozCaCGOiGIyw0+Evc="; - }) - ]; - nativeBuildInputs = [ blosc2 cython diff --git a/pkgs/development/python-modules/tatsu/default.nix b/pkgs/development/python-modules/tatsu/default.nix index 635f9f34fcf9f..7769c3b298a44 100644 --- a/pkgs/development/python-modules/tatsu/default.nix +++ b/pkgs/development/python-modules/tatsu/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "tatsu"; - version = "5.10.6"; + version = "5.11.3"; pyproject = true; disabled = pythonOlder "3.10"; @@ -19,7 +19,7 @@ buildPythonPackage rec { owner = "neogeny"; repo = "TatSu"; rev = "refs/tags/v${version}"; - hash = "sha256-oCYvDP8TbafyJAgl3k7fZ8MKk9prPytvl971s2BCyWA="; + hash = "sha256-5tVvElM7pZF3rZJMMk0IIZBhiv+9J8KBLjfoVTPF198="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/tcxreader/default.nix b/pkgs/development/python-modules/tcxreader/default.nix index 1334708fc7f72..7509b02e94e27 100644 --- a/pkgs/development/python-modules/tcxreader/default.nix +++ b/pkgs/development/python-modules/tcxreader/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "tcxreader"; - version = "0.4.6"; + version = "0.4.9"; pyproject = true; disabled = pythonOlder "3.6"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "alenrajsp"; repo = "tcxreader"; rev = "refs/tags/v${version}"; - hash = "sha256-J7yzJfJr2EK/0hZLVgk+Poqr/vY/9bsgA6cePTQ45U0="; + hash = "sha256-N/YsH1P8F9bSuzTgrYNU6xEO/yldXNIXMN0pQgIesfc="; }; nativeBuildInputs = [ @@ -35,6 +35,7 @@ buildPythonPackage rec { meta = with lib; { description = "A reader for Garmin’s TCX file format"; homepage = "https://github.com/alenrajsp/tcxreader"; + changelog = "https://github.com/alenrajsp/tcxreader/blob/v${version}/CHANGELOG.md"; license = licenses.mit; maintainers = with maintainers; [ firefly-cpp ]; }; diff --git a/pkgs/development/python-modules/telegram-text/default.nix b/pkgs/development/python-modules/telegram-text/default.nix index b79cd78bf4b90..ca37dde8fb861 100644 --- a/pkgs/development/python-modules/telegram-text/default.nix +++ b/pkgs/development/python-modules/telegram-text/default.nix @@ -9,15 +9,15 @@ buildPythonPackage rec { pname = "telegram-text"; - version = "0.1.2"; + version = "0.2.0"; pyproject = true; - disabled = pythonOlder "3.7"; + disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "SKY-ALIN"; repo = "telegram-text"; - rev = "v${version}"; - hash = "sha256-p8SVQq7IvkVuOFE8VDugROLY5Wk0L2HmXyacTzFFSP4="; + rev = "refs/tags/v${version}"; + hash = "sha256-eUy4kyCmM/5Ag/0s9hYW2IIg+OTX2L7EsoOYivhd0pU="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/templateflow/default.nix b/pkgs/development/python-modules/templateflow/default.nix new file mode 100644 index 0000000000000..c879b7064d0fc --- /dev/null +++ b/pkgs/development/python-modules/templateflow/default.nix @@ -0,0 +1,45 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, pythonOlder +, pytestCheckHook +, setuptools-scm +, nipreps-versions +, pybids +, requests +, tqdm +}: + +buildPythonPackage rec { + pname = "templateflow"; + version = "23.1.0"; + pyproject = true; + + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "templateflow"; + repo = "python-client"; + rev = "refs/tags/${version}"; + hash = "sha256-8AdXC1IFGfYZ5cvCAyBz0tD3zia+KBILX0tL9IcO2NA="; + }; + + nativeBuildInputs = [ setuptools-scm ]; + propagatedBuildInputs = [ + nipreps-versions + pybids + requests + tqdm + ]; + + doCheck = false; # most tests try to download data + #pythonImportsCheck = [ "templateflow" ]; # touches $HOME/.cache, hence needs https://github.com/NixOS/nixpkgs/pull/120300 + + meta = with lib; { + homepage = "https://templateflow.org/python-client"; + description = "Python API to query TemplateFlow via pyBIDS"; + changelog = "https://github.com/templateflow/python-client/releases/tag/${version}"; + license = licenses.asl20; + maintainers = with maintainers; [ bcdarwin ]; + }; +} diff --git a/pkgs/development/python-modules/tensordict/default.nix b/pkgs/development/python-modules/tensordict/default.nix new file mode 100644 index 0000000000000..1c5bad17e8a0f --- /dev/null +++ b/pkgs/development/python-modules/tensordict/default.nix @@ -0,0 +1,63 @@ +{ lib +, buildPythonPackage +, pythonOlder +, fetchFromGitHub +, setuptools +, torch +, wheel +, which +, cloudpickle +, numpy +, h5py +, pytestCheckHook +}: + +buildPythonPackage rec { + pname = "tensordict"; + version = "0.3.0"; + pyproject = true; + + disabled = pythonOlder "3.8"; + + src = fetchFromGitHub { + owner = "pytorch"; + repo = "tensordict"; + rev = "refs/tags/v${version}"; + hash = "sha256-XTFUzPs/fqX3DPtu/qSE1hY+7r/HToPVPaTyVRzDT/E="; + }; + + nativeBuildInputs = [ + setuptools + torch + wheel + which + ]; + + propagatedBuildInputs = [ + cloudpickle + numpy + torch + ]; + + pythonImportsCheck = [ + "tensordict" + ]; + + # We have to delete the source because otherwise it is used instead of the installed package. + preCheck = '' + rm -rf tensordict + ''; + + nativeCheckInputs = [ + h5py + pytestCheckHook + ]; + + meta = with lib; { + description = "A pytorch dedicated tensor container"; + changelog = "https://github.com/pytorch/tensordict/releases/tag/v${version}"; + homepage = "https://github.com/pytorch/tensordict"; + license = licenses.mit; + maintainers = with maintainers; [ GaetanLepage ]; + }; +} diff --git a/pkgs/development/python-modules/tesla-fleet-api/default.nix b/pkgs/development/python-modules/tesla-fleet-api/default.nix new file mode 100644 index 0000000000000..0af92c2a4a921 --- /dev/null +++ b/pkgs/development/python-modules/tesla-fleet-api/default.nix @@ -0,0 +1,45 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, setuptools +, pythonOlder +, aiohttp +}: + +buildPythonPackage rec { + pname = "tesla-fleet-api"; + version = "0.2.6"; + pyproject = true; + + disabled = pythonOlder "3.10"; + + src = fetchFromGitHub { + owner = "Teslemetry"; + repo = "python-tesla-fleet-api"; + rev = "refs/tags/v${version}"; + hash = "sha256-Kp/amNhDVGuGr2IA5t4R3HpVqUagI8Dzn+PkV15bO6w="; + }; + + nativeBuildInputs = [ + setuptools + ]; + + propagatedBuildInputs = [ + aiohttp + ]; + + # Module has no tests + doCheck =false; + + pythonImportsCheck = [ + "tesla_fleet_api" + ]; + + meta = with lib; { + description = "Python library for Tesla Fleet API and Teslemetry"; + homepage = "https://github.com/Teslemetry/python-tesla-fleet-api"; + changelog = "https://github.com/Teslemetry/python-tesla-fleet-api/releases/tag/v${version}"; + license = licenses.asl20; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/teslajsonpy/default.nix b/pkgs/development/python-modules/teslajsonpy/default.nix index 0c2b87bade1ce..6113762d77a2e 100644 --- a/pkgs/development/python-modules/teslajsonpy/default.nix +++ b/pkgs/development/python-modules/teslajsonpy/default.nix @@ -17,7 +17,7 @@ buildPythonPackage rec { pname = "teslajsonpy"; - version = "3.9.9"; + version = "3.9.10"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -26,7 +26,7 @@ buildPythonPackage rec { owner = "zabuldon"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-9ySUgRz1Zp0tkHCEkDcygm97mji4mjA5ltrriP9zAiQ="; + hash = "sha256-DNac9rrHJkFWlYRLvDB49kjmJV2EMvs5Y2ndSGY7uvk="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/thefuzz/default.nix b/pkgs/development/python-modules/thefuzz/default.nix index 8d240fe19e3e7..1297ef2895c10 100644 --- a/pkgs/development/python-modules/thefuzz/default.nix +++ b/pkgs/development/python-modules/thefuzz/default.nix @@ -9,14 +9,14 @@ buildPythonPackage rec { pname = "thefuzz"; - version = "0.20.0"; + version = "0.22.1"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-ol5JeGscRgPH/G4taea8ZgmCopGWmLU2/4NU4GMcxA0="; + hash = "sha256-cTgDmn7PVA2jI3kthZLvmQKx1563jBR9TyBmTeefNoA="; }; propagatedBuildInputs = [ levenshtein ]; diff --git a/pkgs/development/python-modules/thermopro-ble/default.nix b/pkgs/development/python-modules/thermopro-ble/default.nix index b03038c4aa5fd..3cf2170ed0841 100644 --- a/pkgs/development/python-modules/thermopro-ble/default.nix +++ b/pkgs/development/python-modules/thermopro-ble/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "thermopro-ble"; - version = "0.5.0"; + version = "0.8.0"; format = "pyproject"; disabled = pythonOlder "3.9"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "bluetooth-devices"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-4lk/K9XW9naPDRXmuqKFBdOwMtLlQE8etJFEbNgfIvA="; + hash = "sha256-ENzFX0rD97hCnllFKjcSGbAbEksqln/Hj0MuDVOKGDo="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/tilequant/default.nix b/pkgs/development/python-modules/tilequant/default.nix index fe4a748fa238b..220f40354dcc6 100644 --- a/pkgs/development/python-modules/tilequant/default.nix +++ b/pkgs/development/python-modules/tilequant/default.nix @@ -4,6 +4,7 @@ , click , ordered-set , pythonOlder +, pythonRelaxDepsHook , pillow , sortedcollections , setuptools_dso @@ -21,6 +22,14 @@ buildPythonPackage rec { hash = "sha256-uW1g3nlT6Y+1beifo/MOlGxsGL7on/jcAROxSddySHk="; }; + nativeBuildInputs = [ + pythonRelaxDepsHook + ]; + + pythonRelaxDeps = [ + "pillow" + ]; + propagatedBuildInputs = [ click ordered-set diff --git a/pkgs/development/python-modules/timezonefinder/default.nix b/pkgs/development/python-modules/timezonefinder/default.nix index a0a72de7bb179..9ad58a97ff4ad 100644 --- a/pkgs/development/python-modules/timezonefinder/default.nix +++ b/pkgs/development/python-modules/timezonefinder/default.nix @@ -13,16 +13,16 @@ buildPythonPackage rec { pname = "timezonefinder"; - version = "6.2.0"; - format = "pyproject"; + version = "6.4.0"; + pyproject = true; - disabled = pythonOlder "3.8"; + disabled = pythonOlder "3.9"; src = fetchFromGitHub { owner = "jannikmi"; - repo = pname; + repo = "timezonefinder"; rev = "refs/tags/${version}"; - hash = "sha256-n6TcTezu5seKy34KDlzGikAVaqAud00gxywwJA3MaWM="; + hash = "sha256-6hcReAzqTp4Od/PJN/W1uz4VS129yMFqQYznbsC/TRY="; }; nativeBuildInputs = [ @@ -42,11 +42,6 @@ buildPythonPackage rec { pytestCheckHook ]; - postPatch = '' - substituteInPlace pyproject.toml \ - --replace 'numpy = "^1.22"' 'numpy = "*"' - ''; - pythonImportsCheck = [ "timezonefinder" ]; diff --git a/pkgs/development/python-modules/token-bucket/default.nix b/pkgs/development/python-modules/token-bucket/default.nix index 497d10d84fe8d..0805ee9dea39e 100644 --- a/pkgs/development/python-modules/token-bucket/default.nix +++ b/pkgs/development/python-modules/token-bucket/default.nix @@ -2,14 +2,16 @@ , stdenv , buildPythonPackage , fetchFromGitHub +, fetchpatch , pytestCheckHook , pythonOlder +, setuptools }: buildPythonPackage rec { pname = "token-bucket"; version = "0.3.0"; - format = "setuptools"; + pyproject = true; disabled = pythonOlder "3.7"; @@ -20,11 +22,24 @@ buildPythonPackage rec { hash = "sha256-dazqJRpC8FUHOhgKFzDnIl5CT2L74J2o2Hsm0IQf4Cg="; }; + patches = [ + # Replace imp with importlib, https://github.com/falconry/token-bucket/pull/24 + (fetchpatch { + name = "remove-imp.patch"; + url = "https://github.com/falconry/token-bucket/commit/10a3c9f4de00f4933349f66b4c72b6c96db6e766.patch"; + hash = "sha256-Hk5+i3xzeA3F1kXRaRarWT9mff2lT2WNmTfTZvYzGYI="; + }) + ]; + postPatch = '' substituteInPlace setup.py \ --replace "'pytest-runner'" "" ''; + nativeBuildInputs = [ + setuptools + ]; + nativeCheckInputs = [ pytestCheckHook ]; diff --git a/pkgs/development/python-modules/tokentrim/default.nix b/pkgs/development/python-modules/tokentrim/default.nix index c830d29b8a944..9588fadd6cb52 100644 --- a/pkgs/development/python-modules/tokentrim/default.nix +++ b/pkgs/development/python-modules/tokentrim/default.nix @@ -5,16 +5,16 @@ , tiktoken }: -buildPythonPackage { +buildPythonPackage rec { pname = "tokentrim"; - version = "unstable-2023-09-07"; - format = "pyproject"; + version = "0.1.13"; + pyproject = true; src = fetchFromGitHub { owner = "KillianLucas"; - repo = "tokentrim"; - rev = "e98ad3a2ca0e321a7347f76c30be584175495139"; - hash = "sha256-95xitHnbFFaj0xPuLMWvIvuJzoCO3VSd592X1RI9h3A="; + repo = pname; + rev = "refs/tags/v${version}"; + hash = "sha256-zr2SLT3MBuMD98g9fdS0mLuijcssRQ/S3+tCq2Cw1/4="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/torchmetrics/default.nix b/pkgs/development/python-modules/torchmetrics/default.nix index 70657185acba1..5361e6bc49a39 100644 --- a/pkgs/development/python-modules/torchmetrics/default.nix +++ b/pkgs/development/python-modules/torchmetrics/default.nix @@ -20,21 +20,21 @@ let pname = "torchmetrics"; - version = "1.3.0"; + version = "1.3.0.post"; in buildPythonPackage { inherit pname version; pyproject = true; + disabled = pythonOlder "3.8"; + src = fetchFromGitHub { owner = "Lightning-AI"; repo = "torchmetrics"; rev = "refs/tags/v${version}"; - hash = "sha256-xDUT9GSOn6ZNDFRsFws3NLxBsILKDHPKeEANwM8NXj8="; + hash = "sha256-InwXOeQ/u7sdq/+gjm0CSCiuB/9YXP+rPVbvOSH16Dk="; }; - disabled = pythonOlder "3.8"; - propagatedBuildInputs = [ numpy lightning-utilities diff --git a/pkgs/development/python-modules/torchrl/default.nix b/pkgs/development/python-modules/torchrl/default.nix new file mode 100644 index 0000000000000..371a178ab5c94 --- /dev/null +++ b/pkgs/development/python-modules/torchrl/default.nix @@ -0,0 +1,140 @@ +{ lib +, buildPythonPackage +, pythonOlder +, fetchFromGitHub +, ninja +, setuptools +, wheel +, which +, cloudpickle +, numpy +, torch +, ale-py +, gym +, pygame +, gymnasium +, mujoco +, moviepy +, git +, hydra-core +, tensorboard +, tqdm +, wandb +, packaging +, tensordict +, imageio +, pytest-rerunfailures +, pytestCheckHook +, pyyaml +, scipy +}: + +buildPythonPackage rec { + pname = "torchrl"; + version = "0.3.0"; + pyproject = true; + + disabled = pythonOlder "3.8"; + + src = fetchFromGitHub { + owner = "pytorch"; + repo = "rl"; + rev = "refs/tags/v${version}"; + hash = "sha256-ngl/gbNm+62W6UFNo8GOhSaIuK9FERDxGBCr++7B4gw="; + }; + + nativeBuildInputs = [ + ninja + setuptools + wheel + which + ]; + + propagatedBuildInputs = [ + cloudpickle + numpy + packaging + tensordict + torch + ]; + + passthru.optional-dependencies = { + atari = [ + ale-py + gym + pygame + ]; + gym-continuous = [ + gymnasium + mujoco + ]; + rendering = [ + moviepy + ]; + utils = [ + git + hydra-core + tensorboard + tqdm + wandb + ]; + }; + + # torchrl needs to create a folder to store datasets + preBuild = '' + export D4RL_DATASET_DIR=$(mktemp -d) + ''; + + pythonImportsCheck = [ + "torchrl" + ]; + + # We have to delete the source because otherwise it is used instead of the installed package. + preCheck = '' + rm -rf torchrl + + export XDG_RUNTIME_DIR=$(mktemp -d) + ''; + + nativeCheckInputs = [ + gymnasium + imageio + pytest-rerunfailures + pytestCheckHook + pyyaml + scipy + ] + ++ passthru.optional-dependencies.atari + ++ passthru.optional-dependencies.gym-continuous + ++ passthru.optional-dependencies.rendering; + + disabledTests = [ + # mujoco.FatalError: an OpenGL platform library has not been loaded into this process, this most likely means that a valid OpenGL context has not been created before mjr_makeContext was called + "test_vecenvs_env" + + # ValueError: Can't write images with one color channel. + "test_log_video" + + # Those tests require the ALE environments (provided by unpackaged shimmy) + "test_collector_env_reset" + "test_gym" + "test_gym_fake_td" + "test_recorder" + "test_recorder_load" + "test_rollout" + "test_parallel_trans_env_check" + "test_serial_trans_env_check" + "test_single_trans_env_check" + "test_td_creation_from_spec" + "test_trans_parallel_env_check" + "test_trans_serial_env_check" + "test_transform_env" + ]; + + meta = with lib; { + description = "A modular, primitive-first, python-first PyTorch library for Reinforcement Learning"; + homepage = "https://github.com/pytorch/rl"; + license = licenses.mit; + maintainers = with maintainers; [ GaetanLepage ]; + }; +} diff --git a/pkgs/development/python-modules/transformers/default.nix b/pkgs/development/python-modules/transformers/default.nix index 9168306bcb8a0..ea72ad9f0424e 100644 --- a/pkgs/development/python-modules/transformers/default.nix +++ b/pkgs/development/python-modules/transformers/default.nix @@ -53,7 +53,7 @@ buildPythonPackage rec { pname = "transformers"; - version = "4.36.1"; + version = "4.37.2"; format = "setuptools"; disabled = pythonOlder "3.8"; @@ -62,7 +62,7 @@ buildPythonPackage rec { owner = "huggingface"; repo = "transformers"; rev = "refs/tags/v${version}"; - hash = "sha256-sVWDpChLjiSZQXyXsZtTUZMF/CckTaJzitk3hpagM64="; + hash = "sha256-O8A+6f6Qwr/OqwzA3i3MPCmcwg1BoQY6mvhozrLz16Y="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/trimesh/default.nix b/pkgs/development/python-modules/trimesh/default.nix index 3199218ef6599..d05cefe6ebe47 100644 --- a/pkgs/development/python-modules/trimesh/default.nix +++ b/pkgs/development/python-modules/trimesh/default.nix @@ -10,14 +10,14 @@ buildPythonPackage rec { pname = "trimesh"; - version = "4.0.8"; + version = "4.1.3"; format = "pyproject"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-FvMFC1h3gu61jZPSPmxYHQmxnxYKmtYAecc/0IT9E8I="; + hash = "sha256-SIHIA6HKo3Ka6rmZrBZfSmN/sNfEjSImYUtbtQs3ozQ="; }; nativeBuildInputs = [ setuptools ]; diff --git a/pkgs/development/python-modules/trytond/default.nix b/pkgs/development/python-modules/trytond/default.nix index bb1835ff7b9be..f196b3a3d4727 100644 --- a/pkgs/development/python-modules/trytond/default.nix +++ b/pkgs/development/python-modules/trytond/default.nix @@ -25,14 +25,14 @@ buildPythonPackage rec { pname = "trytond"; - version = "7.0.2"; + version = "7.0.5"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-/Xb6YOQ8nV+bXTdt/iAgYkBkmV6fRVFjR+86SfKU+aw="; + hash = "sha256-UTDONJrb28gnGkoV6Rb/2ChsgcLIxCmDhSd4gvFxq14="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/twilio/default.nix b/pkgs/development/python-modules/twilio/default.nix index dfdf4676821d9..328dd01f85653 100644 --- a/pkgs/development/python-modules/twilio/default.nix +++ b/pkgs/development/python-modules/twilio/default.nix @@ -18,7 +18,7 @@ buildPythonPackage rec { pname = "twilio"; - version = "8.11.0"; + version = "8.12.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -27,7 +27,7 @@ buildPythonPackage rec { owner = "twilio"; repo = "twilio-python"; rev = "refs/tags/${version}"; - hash = "sha256-yz1jFEjbnG5hqC5wqvxcP3pNLI3GalXWbREToCwf9BU="; + hash = "sha256-I2ktLhlSFeQ3f7/zcm5NKLv5Pm1R7EPkeMPREMa9bBA="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/twine/default.nix b/pkgs/development/python-modules/twine/default.nix index 9bd98fd5adbe8..e656970ef6271 100644 --- a/pkgs/development/python-modules/twine/default.nix +++ b/pkgs/development/python-modules/twine/default.nix @@ -5,7 +5,7 @@ , importlib-metadata , keyring , pkginfo -, readme_renderer +, readme-renderer , requests , requests-toolbelt , rich @@ -31,7 +31,7 @@ buildPythonPackage rec { importlib-metadata keyring pkginfo - readme_renderer + readme-renderer requests requests-toolbelt rfc3986 diff --git a/pkgs/development/python-modules/types-aiobotocore-packages/default.nix b/pkgs/development/python-modules/types-aiobotocore-packages/default.nix index ada4762cffe8b..17058a40a088a 100644 --- a/pkgs/development/python-modules/types-aiobotocore-packages/default.nix +++ b/pkgs/development/python-modules/types-aiobotocore-packages/default.nix @@ -52,701 +52,701 @@ rec { types-aiobotocore-acm-pca = buildTypesAiobotocorePackage "acm-pca" "2.8.0" "sha256-ib044RjF+1projrSoyiMdj9LkbT1BJrfObxs1ukSNHo="; - types-aiobotocore-alexaforbusiness = buildTypesAiobotocorePackage "alexaforbusiness" "2.9.0" "sha256-lNp/rvyWKvD9jY9J9vU98CFyB/ysiS8JslXrjK2BtgE="; + types-aiobotocore-alexaforbusiness = buildTypesAiobotocorePackage "alexaforbusiness" "2.11.0" "sha256-FF1VOkekfT4cSx2y61smPVMTD5k3FBIsnslOTnxy+5o="; - types-aiobotocore-amp = buildTypesAiobotocorePackage "amp" "2.9.0" "sha256-OiejoMmWNnF3dBKPWInCurB2xe0hnKG/FAR8NVuIeiU="; + types-aiobotocore-amp = buildTypesAiobotocorePackage "amp" "2.11.0" "sha256-PzA8ooo026gvNYL+xgjJ1EJomCC+lq1QDbY54k067BM="; - types-aiobotocore-amplify = buildTypesAiobotocorePackage "amplify" "2.9.0" "sha256-LUW+yAw4K8kOxSqF3tJuqXqHc83+3thnCbdWcz/PnO0="; + types-aiobotocore-amplify = buildTypesAiobotocorePackage "amplify" "2.11.0" "sha256-RCC+fkQJMKYrv0TdAUGOXLyufeCJyV9luXKOXvjXc+s="; - types-aiobotocore-amplifybackend = buildTypesAiobotocorePackage "amplifybackend" "2.9.0" "sha256-TTmpkylWnRxNs+1s75qTdQ+GgWnyfyUZhfE1e1eSYXE="; + types-aiobotocore-amplifybackend = buildTypesAiobotocorePackage "amplifybackend" "2.11.0" "sha256-U5BemtvxVynvFaQ9gxiI3kFB5+HJjpFTZkXMLFaMeRE="; - types-aiobotocore-amplifyuibuilder = buildTypesAiobotocorePackage "amplifyuibuilder" "2.9.0" "sha256-ovLWirPFaMwFjk6e7zZbSoDxiXp0/ll6HnT9pxEJCaY="; + types-aiobotocore-amplifyuibuilder = buildTypesAiobotocorePackage "amplifyuibuilder" "2.11.0" "sha256-4oQMgEJD6RT8ukcdoDF7dWAnNj51gBWOYITKjzLGTBo="; - types-aiobotocore-apigateway = buildTypesAiobotocorePackage "apigateway" "2.9.0" "sha256-mexH2IJbHyMzKRL1jVUuqiUdHBOOHRhCDR29GVIOgmc="; + types-aiobotocore-apigateway = buildTypesAiobotocorePackage "apigateway" "2.11.0" "sha256-YGOdBuM5250bIoM2rJeJv51zF6kB1zvGYksmr56SW8g="; - types-aiobotocore-apigatewaymanagementapi = buildTypesAiobotocorePackage "apigatewaymanagementapi" "2.9.0" "sha256-ISlXwESp+llqSMTv2T7CwtTAuIXfiRTGwQnIejOb7aU="; + types-aiobotocore-apigatewaymanagementapi = buildTypesAiobotocorePackage "apigatewaymanagementapi" "2.11.0" "sha256-LFI4IJyDQnPYKq0WHk9y56LjdtW6nHHUN2GLGk+ZdLs="; - types-aiobotocore-apigatewayv2 = buildTypesAiobotocorePackage "apigatewayv2" "2.9.0" "sha256-h2C2CZVVH72OML31/f0Yl8Ril2uGEvFKwHnumP9FoVo="; + types-aiobotocore-apigatewayv2 = buildTypesAiobotocorePackage "apigatewayv2" "2.11.0" "sha256-3gJkB9xUtxHqGnl0BIt37bDpM5GJQhjtiHkwDVOWaP0="; - types-aiobotocore-appconfig = buildTypesAiobotocorePackage "appconfig" "2.9.0" "sha256-SO7ZAepv4lNrfZ6u3krEsN62LxLsK3p/hD3Bi68pYog="; + types-aiobotocore-appconfig = buildTypesAiobotocorePackage "appconfig" "2.11.0" "sha256-zGtX4wRie1PtMZAHH187+tr7sBKKDGI0rtmobYbuOMg="; - types-aiobotocore-appconfigdata = buildTypesAiobotocorePackage "appconfigdata" "2.9.0" "sha256-qApIy0bwsg3T5LY1CzqpKfg8F+5MU/1Ygt7qN+TYI4c="; + types-aiobotocore-appconfigdata = buildTypesAiobotocorePackage "appconfigdata" "2.11.0" "sha256-yh1GVL7P6yRVE3o4mKBFFKhrXRN+7dO6PAAcdFENci0="; - types-aiobotocore-appfabric = buildTypesAiobotocorePackage "appfabric" "2.9.0" "sha256-wolhhyFXsLIp8phvKat8baoUd6WJTv23J6eoThQ4QJ0="; + types-aiobotocore-appfabric = buildTypesAiobotocorePackage "appfabric" "2.11.0" "sha256-1HfybuUtT3ZPjOTgI2qOHZcXitlfzfVMFnHEvvpXYHI="; - types-aiobotocore-appflow = buildTypesAiobotocorePackage "appflow" "2.9.0" "sha256-QO6o0BPDJ/qOul8XkN+BW36aQomv//+1kG6sa8gljuE="; + types-aiobotocore-appflow = buildTypesAiobotocorePackage "appflow" "2.11.0" "sha256-7gCktOrsUm6y3KId+7i6rl7QA5vGhPletY6gKyJdG6k="; - types-aiobotocore-appintegrations = buildTypesAiobotocorePackage "appintegrations" "2.9.0" "sha256-/zUXglyQUewxMcRgoCLPHHrc8fIjm68C547o4DOn/j8="; + types-aiobotocore-appintegrations = buildTypesAiobotocorePackage "appintegrations" "2.11.0" "sha256-NUmmtV2RcREzC030heh5Vq2LvHCfTv25NMefwIk6hfA="; - types-aiobotocore-application-autoscaling = buildTypesAiobotocorePackage "application-autoscaling" "2.9.0" "sha256-G2pTcy4uLL7ypl3PcKvI1g5jD7Ytxu37jxWs+i1opHM="; + types-aiobotocore-application-autoscaling = buildTypesAiobotocorePackage "application-autoscaling" "2.11.0" "sha256-ag+5kqW+j0c9MC/Ua4yUPPW72Gbj1LbA1QWG9CwCC7U="; - types-aiobotocore-application-insights = buildTypesAiobotocorePackage "application-insights" "2.9.0" "sha256-YwwGYTwwFOsyfsyY8L5dKhFl+uGTT+oKYEXSgo1UPXE="; + types-aiobotocore-application-insights = buildTypesAiobotocorePackage "application-insights" "2.11.0" "sha256-pKLm6w1+j56QX+jxoywew8Polgeq4H2/xQpqQ71vQCA="; - types-aiobotocore-applicationcostprofiler = buildTypesAiobotocorePackage "applicationcostprofiler" "2.9.0" "sha256-ghooPwffm8YMs50MpYT82WJz7vHsMi/HZy0drnSXJUA="; + types-aiobotocore-applicationcostprofiler = buildTypesAiobotocorePackage "applicationcostprofiler" "2.11.0" "sha256-BnIdJmvh76xDITk+iEkoxTHeEBa9FZDV84fn1uvWz6g="; - types-aiobotocore-appmesh = buildTypesAiobotocorePackage "appmesh" "2.9.0" "sha256-tydjCV77K/EAyddwmiMDXsEC469GbgNcZRLMmy61Zh4="; + types-aiobotocore-appmesh = buildTypesAiobotocorePackage "appmesh" "2.11.0" "sha256-8f0vxVqWWdm8UYl7rtHBSDR5PJGd8bAC6DTopPUbdwk="; - types-aiobotocore-apprunner = buildTypesAiobotocorePackage "apprunner" "2.9.0" "sha256-nt2evZ5TqcCrwjGPornCrY27nlQX09RpYEHoYRb9XUA="; + types-aiobotocore-apprunner = buildTypesAiobotocorePackage "apprunner" "2.11.0" "sha256-uZtrlWm1Hc3RsgtAzYf+ZY9G/G56fhbgxq0Aqo0SmIU="; - types-aiobotocore-appstream = buildTypesAiobotocorePackage "appstream" "2.9.0" "sha256-q/LwAh7O9SZOXjGawKwCcZFwRGmztfRjZ0sUkS/QuOc="; + types-aiobotocore-appstream = buildTypesAiobotocorePackage "appstream" "2.11.0" "sha256-fI/BuF5aulwnH2IviGqp4PPcIInwGrBNyghiCu4AGzo="; - types-aiobotocore-appsync = buildTypesAiobotocorePackage "appsync" "2.9.0" "sha256-e4AE0rYgr61INMVTIuv3G35ywBnfnGo0+ZkAUbJCxS8="; + types-aiobotocore-appsync = buildTypesAiobotocorePackage "appsync" "2.11.0" "sha256-/eL7b7ZQp47BlLRGbxqwg6JnfYljXAtQOfRjnqWHndo="; - types-aiobotocore-arc-zonal-shift = buildTypesAiobotocorePackage "arc-zonal-shift" "2.9.0" "sha256-PM6yAXmqwLXs7NAC6hnFUVCnkWg3iNz8hCN7soWSxPE="; + types-aiobotocore-arc-zonal-shift = buildTypesAiobotocorePackage "arc-zonal-shift" "2.11.0" "sha256-WiWU20Yc3bWARmkbYnBA1Wy315vStIq16mLF4UHRksQ="; - types-aiobotocore-athena = buildTypesAiobotocorePackage "athena" "2.9.0" "sha256-uMKc1u/u3ppRCVVPZ05VTlXoEfxCY9tyLqYpxnl+CWc="; + types-aiobotocore-athena = buildTypesAiobotocorePackage "athena" "2.11.0" "sha256-UtJadPx8k7JfoOXexAY/Sz6bfsrapCsdYtz0L0zIXxc="; - types-aiobotocore-auditmanager = buildTypesAiobotocorePackage "auditmanager" "2.9.0" "sha256-gPzB/GSkjq44Q2SjjDWJyidFNzg4veag0PvQ7nFl+pY="; + types-aiobotocore-auditmanager = buildTypesAiobotocorePackage "auditmanager" "2.11.0" "sha256-Xe0Hn8XpfnmtObeKRtm0focC+s2eHLoTdERnDZmAs4g="; - types-aiobotocore-autoscaling = buildTypesAiobotocorePackage "autoscaling" "2.9.0" "sha256-AaCvm94dtOdLlOA1X8k5r2K1sbpTerX6cJEjdGs3L6Y="; + types-aiobotocore-autoscaling = buildTypesAiobotocorePackage "autoscaling" "2.11.0" "sha256-eJnuoN6ciE3k97/hLhr45ppWtq4jEpPcqpkZ2H+qd6Y="; - types-aiobotocore-autoscaling-plans = buildTypesAiobotocorePackage "autoscaling-plans" "2.9.0" "sha256-p43Kie/Ax1BNmIN2Sny05NlxHWuasbXLlRbTNpvI8eM="; + types-aiobotocore-autoscaling-plans = buildTypesAiobotocorePackage "autoscaling-plans" "2.11.0" "sha256-cESQHBGUvT8saQhqNsOqSpyO7gIZmnAb2jhGO0kt5AE="; - types-aiobotocore-backup = buildTypesAiobotocorePackage "backup" "2.9.0" "sha256-CO6ETR9Q1Lkj0o4d24iVfhvLyN3FBTpWQYrWStvPVP4="; + types-aiobotocore-backup = buildTypesAiobotocorePackage "backup" "2.11.0" "sha256-+r02pZW1xLqPlt5kHKrLXKFRwdSiHKWxZAxuji9TFvg="; - types-aiobotocore-backup-gateway = buildTypesAiobotocorePackage "backup-gateway" "2.9.0" "sha256-TGtFwgq00PrrVKxJYhiIWMzUGpsvFMYVjS5xBxEorWI="; + types-aiobotocore-backup-gateway = buildTypesAiobotocorePackage "backup-gateway" "2.11.0" "sha256-dEqYpn7xF5JRzFgVANFeXw/ukeoduvI4LBOEwYwjLxg="; - types-aiobotocore-backupstorage = buildTypesAiobotocorePackage "backupstorage" "2.9.0" "sha256-gNXODf0OIkG0Dw4JOZU0XuRKmf8CIc+GTcgZ8PUnRcY="; + types-aiobotocore-backupstorage = buildTypesAiobotocorePackage "backupstorage" "2.11.0" "sha256-65luTwPeI4SHfJUhWLR9YJQwbdcB6J1ON6EBhojok/k="; - types-aiobotocore-batch = buildTypesAiobotocorePackage "batch" "2.9.0" "sha256-x/sNVy1MmdBelRwb+ytT13K9FcgUdnoahgckniLN9Gs="; + types-aiobotocore-batch = buildTypesAiobotocorePackage "batch" "2.11.0" "sha256-A94x70FSnAUJSt5NM9yzhq4r7f2fsaHLx8oXeCq//PE="; - types-aiobotocore-billingconductor = buildTypesAiobotocorePackage "billingconductor" "2.9.0" "sha256-wsbM8GYdwDf1ILZZBM/lBQo/qTduA49pljwfVlNTPo8="; + types-aiobotocore-billingconductor = buildTypesAiobotocorePackage "billingconductor" "2.11.0" "sha256-Ze1Bsuw4fDgGJ8nVsRtmGQPH0ZPfxE+OUb6T8Q5hrBI="; - types-aiobotocore-braket = buildTypesAiobotocorePackage "braket" "2.9.0" "sha256-Wi8Y5Ue4xiVm+3Ol9e3nDOS8QL1LjcUQsySIWc1R16M="; + types-aiobotocore-braket = buildTypesAiobotocorePackage "braket" "2.11.0" "sha256-upNbHBQLQVlgHItd8NuFq1C7DkM/1F1BAxESQevmeZs="; - types-aiobotocore-budgets = buildTypesAiobotocorePackage "budgets" "2.9.0" "sha256-PU74F6DnMXB435pCmee7IAPS7YSR0pFBjDqgPMfORT4="; + types-aiobotocore-budgets = buildTypesAiobotocorePackage "budgets" "2.11.0" "sha256-SKgVqVkHPX9ytLBR+yUpnVz82AGdxpJ+BLO7kBGJ3/k="; - types-aiobotocore-ce = buildTypesAiobotocorePackage "ce" "2.9.0" "sha256-0drcozC0lKqYuHK3vSF2QG/7lywN6yKxbwJxqMIrIDM="; + types-aiobotocore-ce = buildTypesAiobotocorePackage "ce" "2.11.0" "sha256-th7HVQIlLgfwYgZ3GFlYU5Cg5jjfEJbulaOaLFnQbUk="; - types-aiobotocore-chime = buildTypesAiobotocorePackage "chime" "2.9.0" "sha256-IGF7YcjgZy99X4KZA0CYJDMcJP8S9GZHwInW8eqLsCc="; + types-aiobotocore-chime = buildTypesAiobotocorePackage "chime" "2.11.0" "sha256-s3VHCPLNHFHNYNHBzp2mhToY45+2bua8Wwy38rvNmjM="; - types-aiobotocore-chime-sdk-identity = buildTypesAiobotocorePackage "chime-sdk-identity" "2.9.0" "sha256-MwfvczW4j4IjZBPUTyA0WcT8sqSTYhrnEzkKrVXuIY4="; + types-aiobotocore-chime-sdk-identity = buildTypesAiobotocorePackage "chime-sdk-identity" "2.11.0" "sha256-BJsXT1lVo/Qfwc37nCGmxIFSN4nGtvVZZxOfLWDXj8U="; - types-aiobotocore-chime-sdk-media-pipelines = buildTypesAiobotocorePackage "chime-sdk-media-pipelines" "2.9.0" "sha256-PsEsAjsehN5w5pV+ZHajY+r+9+9SCSutEKA5UGvePeY="; + types-aiobotocore-chime-sdk-media-pipelines = buildTypesAiobotocorePackage "chime-sdk-media-pipelines" "2.11.0" "sha256-n5OniJhfpUA2ieVsaJasxyzV79sGG4QGR+bsy0XxqnQ="; - types-aiobotocore-chime-sdk-meetings = buildTypesAiobotocorePackage "chime-sdk-meetings" "2.9.0" "sha256-XDyk+ljdPfm8poC4A65rz30zviN5XqBo4Ud4K/SN8bY="; + types-aiobotocore-chime-sdk-meetings = buildTypesAiobotocorePackage "chime-sdk-meetings" "2.11.0" "sha256-KjhknFjnVlZpdKQQ7ggBlcTPEB/C9PKvta90oD84yTE="; - types-aiobotocore-chime-sdk-messaging = buildTypesAiobotocorePackage "chime-sdk-messaging" "2.9.0" "sha256-7MQKlLPYRS64OH0CA8SYXJhE52gT9v4BkCzoypV2I/k="; + types-aiobotocore-chime-sdk-messaging = buildTypesAiobotocorePackage "chime-sdk-messaging" "2.11.0" "sha256-gyvW6RoMv66Y7xIi1ak1f/9ivOFaNANQhgD08VlWGPM="; - types-aiobotocore-chime-sdk-voice = buildTypesAiobotocorePackage "chime-sdk-voice" "2.9.0" "sha256-Do/nRj4qmUABDW20dkTU+KK8O/C7yhRIEjV6bCbfjGs="; + types-aiobotocore-chime-sdk-voice = buildTypesAiobotocorePackage "chime-sdk-voice" "2.11.0" "sha256-fK2BzOdlvbacOePr7OacTRd+XEFEAjq6fKXC4nOzZeo="; - types-aiobotocore-cleanrooms = buildTypesAiobotocorePackage "cleanrooms" "2.9.0" "sha256-wfLyaQu2gfOe2+GT+Umwo6VBo70wjmhpKF3qGquaoZo="; + types-aiobotocore-cleanrooms = buildTypesAiobotocorePackage "cleanrooms" "2.11.0" "sha256-jri5DT8VP2J/mdsAR5uO+ZqZJdHexTiyER3tTAGLZd8="; - types-aiobotocore-cloud9 = buildTypesAiobotocorePackage "cloud9" "2.9.0" "sha256-tt+houhkHEPlRxagLzVKn/SVP4Uj9Sv1UsPyidSNLVM="; + types-aiobotocore-cloud9 = buildTypesAiobotocorePackage "cloud9" "2.11.0" "sha256-wh39UKjVcRoFpHZw6es7/iWMSqWr793WGJd1K0arxU4="; - types-aiobotocore-cloudcontrol = buildTypesAiobotocorePackage "cloudcontrol" "2.9.0" "sha256-QIsTkVZnkkzFvZAOFYvF/erH2ov/F01lRDWFglY3Tmw="; + types-aiobotocore-cloudcontrol = buildTypesAiobotocorePackage "cloudcontrol" "2.11.0" "sha256-O0UvfR9zN7G5VLXn3o++xj9NgPfF4HJfD22OiXjFV8c="; - types-aiobotocore-clouddirectory = buildTypesAiobotocorePackage "clouddirectory" "2.9.0" "sha256-gNcIZFG9zk+VZPcT9yxYYVjKPcqO2RJNFjpPNfbnK7E="; + types-aiobotocore-clouddirectory = buildTypesAiobotocorePackage "clouddirectory" "2.11.0" "sha256-z97kNaW0Ku6kdWNfEpVUbQSMA1RBoX3ekiZ/IjcEzxs="; - types-aiobotocore-cloudformation = buildTypesAiobotocorePackage "cloudformation" "2.9.0" "sha256-zdEa2iNNy8gFFkK15ifS3TO7lbauVxDfLyzM8a27NyI="; + types-aiobotocore-cloudformation = buildTypesAiobotocorePackage "cloudformation" "2.11.0" "sha256-uIdbpjOfxxe0+LsrZAg/ygqzvCRNRbivyDMjoaEr7ew="; - types-aiobotocore-cloudfront = buildTypesAiobotocorePackage "cloudfront" "2.9.0" "sha256-S7FeyJ8x4C+/PeeR4kXa1YhyDm5DX2XmoTk4AZMjxKo="; + types-aiobotocore-cloudfront = buildTypesAiobotocorePackage "cloudfront" "2.11.0" "sha256-1J4uH1XM3j7LgXQ8kmuGw0MMMPMh0sfIjGl5xlKbj6U="; - types-aiobotocore-cloudhsm = buildTypesAiobotocorePackage "cloudhsm" "2.9.0" "sha256-epgeZ3U179/91Qy4GZ/fLQGFyIQkn222wHoSOUE2+w0="; + types-aiobotocore-cloudhsm = buildTypesAiobotocorePackage "cloudhsm" "2.11.0" "sha256-NXW9PwF9skgzZ8nRUEqNw0RoO2p0f7PsSzwChG5hR80="; - types-aiobotocore-cloudhsmv2 = buildTypesAiobotocorePackage "cloudhsmv2" "2.9.0" "sha256-wDbY2WENp0RgQ7TwJztZApfUyRQG1hXeMSLInRh5Ot8="; + types-aiobotocore-cloudhsmv2 = buildTypesAiobotocorePackage "cloudhsmv2" "2.11.0" "sha256-/fKdFf3u1C75HiLoKV29Ao67+504P+CduF4BNGJObiE="; - types-aiobotocore-cloudsearch = buildTypesAiobotocorePackage "cloudsearch" "2.9.0" "sha256-c+W60cxtipCAW8sM4QyTRLmZo8xZBm3FCyzqGNwK/Zc="; + types-aiobotocore-cloudsearch = buildTypesAiobotocorePackage "cloudsearch" "2.11.0" "sha256-yfHcWilKZbtxZcJmrOgDJxMybo+GxvFLaoXSW0IxNj4="; - types-aiobotocore-cloudsearchdomain = buildTypesAiobotocorePackage "cloudsearchdomain" "2.9.0" "sha256-WR5b8vBbUxFmsH8tNnho4jqY6jrPsHYXljflL6y6JHc="; + types-aiobotocore-cloudsearchdomain = buildTypesAiobotocorePackage "cloudsearchdomain" "2.11.0" "sha256-vxc4o8AG+y0rA5yqadgOE8K3vCOLMs9uN2G2Xcq2vv4="; - types-aiobotocore-cloudtrail = buildTypesAiobotocorePackage "cloudtrail" "2.9.0" "sha256-roSPY8CJBwX/wCMRd7qLLjLSkk0ys2HT3n4ZFpEE+VU="; + types-aiobotocore-cloudtrail = buildTypesAiobotocorePackage "cloudtrail" "2.11.0" "sha256-FgxQugrLHvORUMcIKJaOJ0/C30WOSRJ9gPbQO3nIQCo="; - types-aiobotocore-cloudtrail-data = buildTypesAiobotocorePackage "cloudtrail-data" "2.9.0" "sha256-t+1vtSNNEBhMieXbkdoUBEXCTPd5me1fDOdHaI5tNfE="; + types-aiobotocore-cloudtrail-data = buildTypesAiobotocorePackage "cloudtrail-data" "2.11.0" "sha256-jc3/f4g5qKpgMhQPetRlfDv1Evh4/JZvzJaHSGhdAZE="; - types-aiobotocore-cloudwatch = buildTypesAiobotocorePackage "cloudwatch" "2.9.0" "sha256-LxuZoxlhUwRorUAGDxTfAIhgTzJm4jMTUS13zMnfaZY="; + types-aiobotocore-cloudwatch = buildTypesAiobotocorePackage "cloudwatch" "2.11.0" "sha256-SUmy1ZUCcLMverR5FoyGowraVQ22xjPLc9P2fDFjIDI="; - types-aiobotocore-codeartifact = buildTypesAiobotocorePackage "codeartifact" "2.9.0" "sha256-eEI1k5dZpy0TuuoYDRFGp9OPWzFXg0mtx0HwB2H4OsM="; + types-aiobotocore-codeartifact = buildTypesAiobotocorePackage "codeartifact" "2.11.0" "sha256-h/BcvTSIOPSN+RdP84UcPNi9pqvL+ITrxDNvH7X7/Pc="; - types-aiobotocore-codebuild = buildTypesAiobotocorePackage "codebuild" "2.9.0" "sha256-AyFoSrmu8DA8UFb7o8Bd4eoUSoTXvdHoADkKH5DBVxM="; + types-aiobotocore-codebuild = buildTypesAiobotocorePackage "codebuild" "2.11.0" "sha256-QBleKtvFchbE6liuxlmCYm55VWLa0Eu38ydTl9AAPrg="; - types-aiobotocore-codecatalyst = buildTypesAiobotocorePackage "codecatalyst" "2.9.0" "sha256-IT7jtWd5QrAaeRG+kgu21KVcWtKiAyEB04E2BsDTPzQ="; + types-aiobotocore-codecatalyst = buildTypesAiobotocorePackage "codecatalyst" "2.11.0" "sha256-OfmohOrk90MjqjmSu+0xiATJrh99myqaUbirDpMj/ag="; - types-aiobotocore-codecommit = buildTypesAiobotocorePackage "codecommit" "2.9.0" "sha256-8wsxzSNeMKOr1N0UJo9sn0Jcp+WCvLOufA67aL49FjQ="; + types-aiobotocore-codecommit = buildTypesAiobotocorePackage "codecommit" "2.11.0" "sha256-gWLVnH0Rm3jlcDff0tUKjmrKqJswkXybn/BbyX1ogxA="; - types-aiobotocore-codedeploy = buildTypesAiobotocorePackage "codedeploy" "2.9.0" "sha256-7NsJWQv4gw2zBYQTxm9p0hEis70WnTNgT5isd55mnt8="; + types-aiobotocore-codedeploy = buildTypesAiobotocorePackage "codedeploy" "2.11.0" "sha256-AIh+hTvPCxsQ1wML574FXpa95QYmcDB61tAL2zepZPA="; - types-aiobotocore-codeguru-reviewer = buildTypesAiobotocorePackage "codeguru-reviewer" "2.9.0" "sha256-zzl4ICc11BaNsYjJZG3lK8ehQlVFi8fWDxunVK4y6wA="; 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- types-aiobotocore-elastictranscoder = buildTypesAiobotocorePackage "elastictranscoder" "2.9.0" "sha256-eDz+7wmr8LIkO1LtxvLoHrfVllycbcQRHA8HLfK/Aig="; + types-aiobotocore-elastictranscoder = buildTypesAiobotocorePackage "elastictranscoder" "2.11.0" "sha256-8MNsjca7iVgs5t7v0zvIXV26vL6gKxXlGzFEONlKgHs="; - types-aiobotocore-elb = buildTypesAiobotocorePackage "elb" "2.9.0" "sha256-nj8CLLrTrGS7GOC90xGxDqVLhxK3mvmWthUucwcf7VU="; + types-aiobotocore-elb = buildTypesAiobotocorePackage "elb" "2.11.0" "sha256-XXf6dX4HXJGjmEvexMOTb8Pv+lF4bXJyKE44kXJwlig="; - types-aiobotocore-elbv2 = buildTypesAiobotocorePackage "elbv2" "2.9.0" "sha256-ILngqOQ5oVsgGj6LRYlx/LrfKf85aakeRP+z96z2FnE="; + types-aiobotocore-elbv2 = buildTypesAiobotocorePackage "elbv2" "2.11.0" "sha256-oOPJPa6Tn9+BrlTENXFhmvN/KI+0w0BKrKnmYbu6x9Q="; - types-aiobotocore-emr = buildTypesAiobotocorePackage "emr" "2.9.0" "sha256-pazXV8RBOciYO4DT8N5Ztl+prpSMqY4PtHTw6fpDVrk="; + types-aiobotocore-emr = buildTypesAiobotocorePackage "emr" "2.11.0" "sha256-+xoCUWrwXEi8q+7Hm3b3kvEzXS/JymrP2fYJIPWLzRI="; - types-aiobotocore-emr-containers = buildTypesAiobotocorePackage "emr-containers" "2.9.0" "sha256-rgnCpxI5VF5PIks1ucO18odXbdJLY6avolYSSYM/ucs="; + types-aiobotocore-emr-containers = buildTypesAiobotocorePackage "emr-containers" "2.11.0" "sha256-F0hz9aHxAf/aHqhXsuA+mvHcFr/5pfVVKdsmmDW7rI4="; - types-aiobotocore-emr-serverless = buildTypesAiobotocorePackage "emr-serverless" "2.9.0" "sha256-ONqc3bBUEpKy6+GlOtZf8Sqf+NaQXbRvVdu/NtA8g/U="; + types-aiobotocore-emr-serverless = buildTypesAiobotocorePackage "emr-serverless" "2.11.0" "sha256-Ge3xhHySq3tXxe1JCj7hdaUjeAfzZkCncJb0Navz6Ic="; - types-aiobotocore-entityresolution = buildTypesAiobotocorePackage "entityresolution" "2.9.0" "sha256-du/tPdrQIaCvndaZMU5Bz3biL8GxT1PQGR/rRbSioTk="; + types-aiobotocore-entityresolution = buildTypesAiobotocorePackage "entityresolution" "2.11.0" "sha256-ey4rDsAWGsJrRECRbPousQb/NSGfwRRshWHqDrDBhqs="; - types-aiobotocore-es = buildTypesAiobotocorePackage "es" "2.9.0" "sha256-2zELfFO2ukQ3CIBA72Ktd67H+VtLSpXEJ8bAARb+Nas="; + types-aiobotocore-es = buildTypesAiobotocorePackage "es" "2.11.0" "sha256-6cDHUdWst+oatMZP9S13vySIyZUQ02GqRlfaOGUkPDQ="; - types-aiobotocore-events = buildTypesAiobotocorePackage "events" "2.9.0" "sha256-wluojbZEFpeJcLDmNqcBzVyAbXi2oe65MNDsSxizwbI="; + types-aiobotocore-events = buildTypesAiobotocorePackage "events" "2.11.0" "sha256-OIZdgxxmfz7HXfZbRlzqK6x1aITXN9NXRp4LBxFmlM4="; - types-aiobotocore-evidently = buildTypesAiobotocorePackage "evidently" "2.9.0" "sha256-y2ZTQ/N2YXFBylexjWfEoeUxlhSNEykUNqzhFvjDprE="; + types-aiobotocore-evidently = buildTypesAiobotocorePackage "evidently" "2.11.0" "sha256-1/YBIoqBgY1RPCrP/REd5iMYpqFXUXm3AFB6CfUo7F8="; - types-aiobotocore-finspace = buildTypesAiobotocorePackage "finspace" "2.9.0" "sha256-JJ1KeDC+sUkixipaE/eEPZLxu4e1IP+yaGrHr/eh2kQ="; + types-aiobotocore-finspace = buildTypesAiobotocorePackage "finspace" "2.11.0" "sha256-Zlv1GzIn79GTgvtOe+4loAHXwDaYX1BiQYG3Fg4y9c0="; - types-aiobotocore-finspace-data = buildTypesAiobotocorePackage "finspace-data" "2.9.0" "sha256-9KCNrLD1vKELitGKWmEKLDsniQTZ+CSLPqJIXU/Ndkg="; + types-aiobotocore-finspace-data = buildTypesAiobotocorePackage "finspace-data" "2.11.0" "sha256-Zb5qmBxMqvuxczqOcwQCL7T4Ur4w9ESiWHAu+Wdq2zM="; - types-aiobotocore-firehose = buildTypesAiobotocorePackage "firehose" "2.9.0" "sha256-NY8XyhCzze30cdDT76faqaFRuhwD43DjTc59h6LwN4M="; + types-aiobotocore-firehose = buildTypesAiobotocorePackage "firehose" "2.11.0" "sha256-O5is88jjNqe02YEXhxQojonvzXFCUW+YPl9DM5GmKjQ="; - types-aiobotocore-fis = buildTypesAiobotocorePackage "fis" "2.9.0" "sha256-oVOz3nStBFvOrlJEy4v9kKjkBbM/cubP/01KUnGGKIk="; + types-aiobotocore-fis = buildTypesAiobotocorePackage "fis" "2.11.0" "sha256-Vmtl3JWRi38gMtA0XEPObaROjUKjzv9LToWWOANx1Ds="; - types-aiobotocore-fms = buildTypesAiobotocorePackage "fms" "2.9.0" "sha256-YdsSwRZitM81L1VrQ8MWLAo5OzMVYHhHlLn0cr+rX1M="; + types-aiobotocore-fms = buildTypesAiobotocorePackage "fms" "2.11.0" "sha256-fIbCkSX6wG5J+IJQh2JXD6TtZOPTOIZQHXlHdVz1LcU="; - types-aiobotocore-forecast = buildTypesAiobotocorePackage "forecast" "2.9.0" "sha256-PSlAjO+J5FmGeerxaXGLblTsxCV/N3pgrp9YE+wbuLE="; + types-aiobotocore-forecast = buildTypesAiobotocorePackage "forecast" "2.11.0" "sha256-kISZKBx6dlTqXUZ6PO3nlZzccw8daR1EZpN0AaBpcbI="; - types-aiobotocore-forecastquery = buildTypesAiobotocorePackage "forecastquery" "2.9.0" "sha256-6wtsWxphhZX6EXACPnQoOEk5jhYU2F0O6uQWd4YcmMU="; + types-aiobotocore-forecastquery = buildTypesAiobotocorePackage "forecastquery" "2.11.0" "sha256-j9jlpZjefqX4sB5D0hnMTd0ZQ8ht+4rt9kJuAByBgGU="; - types-aiobotocore-frauddetector = buildTypesAiobotocorePackage "frauddetector" "2.9.0" "sha256-baWI2JgVwKt009qHelIWdlinITQx3PMmDL2GR4JYs7s="; + types-aiobotocore-frauddetector = buildTypesAiobotocorePackage "frauddetector" "2.11.0" "sha256-DJN85JyJyhX3JDahAmFQbwoKbGR1oYvUs9VsPuiHcrY="; - types-aiobotocore-fsx = buildTypesAiobotocorePackage "fsx" "2.9.0" "sha256-9U5ZyZVlovbMhAEpdxatXMdG+4UiNDzCgOPcolFVz+o="; + types-aiobotocore-fsx = buildTypesAiobotocorePackage "fsx" "2.11.0" "sha256-XCkjME0B8wKycmqHu+magBP6dtVdLRa9j4I9H7gwHKM="; - types-aiobotocore-gamelift = buildTypesAiobotocorePackage "gamelift" "2.9.0" "sha256-zMDERQRfFSDc1ULOKnxh0pCJFto19rc/S4MpPWp/AIQ="; + types-aiobotocore-gamelift = buildTypesAiobotocorePackage "gamelift" "2.11.0" "sha256-xolmKH6/Ea0JGBF8ZnNGxG31SDFiGIP4+l2hq7CAwTo="; types-aiobotocore-gamesparks = buildTypesAiobotocorePackage "gamesparks" "2.6.0" "sha256-9iV7bpGMnzz9TH+g1YpPjbKBSKY3rcL/OJvMOzwLC1M="; - types-aiobotocore-glacier = buildTypesAiobotocorePackage "glacier" "2.9.0" "sha256-gwWW/i5HfpPyNOTW+B2oXm8RiTMBWrlzfdrS15ysR3g="; + types-aiobotocore-glacier = buildTypesAiobotocorePackage "glacier" "2.11.0" "sha256-K96KMoNKQuVzQMsBg8PC+Vp0tZCmkgjuWXHc//hlS84="; - types-aiobotocore-globalaccelerator = buildTypesAiobotocorePackage "globalaccelerator" "2.9.0" "sha256-5w83+uCKnfu2JzAhyhNgyw2fJGHOzLOgS9ihuZ5mjXc="; + types-aiobotocore-globalaccelerator = buildTypesAiobotocorePackage "globalaccelerator" "2.11.0" "sha256-wneACGl4MR+jarW0rIqg15lHBFou/rnULzG2Jv8aI+k="; - types-aiobotocore-glue = buildTypesAiobotocorePackage "glue" "2.9.0" "sha256-UWnIh8+CcSpWPvAHnWJrLORqFKkMSHvxV2QIO2kLHxg="; + types-aiobotocore-glue = buildTypesAiobotocorePackage "glue" "2.11.0" "sha256-/RUFpcd1Jglx7Wxs74W7fFIPTbAVPhicCLfxl5Vtp8U="; - types-aiobotocore-grafana = buildTypesAiobotocorePackage "grafana" "2.9.0" "sha256-LWncyuBU2zDhoF5ob81cg+NWlOI8QiZkbpUSRRolh9E="; + types-aiobotocore-grafana = buildTypesAiobotocorePackage "grafana" "2.11.0" "sha256-Zat6MDfQ/rCSB5Ydn7FPO8LMKl2wRNYZCpVKoXLKrpo="; - types-aiobotocore-greengrass = buildTypesAiobotocorePackage "greengrass" "2.9.0" "sha256-pjBy3YHHblL5JWCycMfZxpFQdPyAGla9TVmLLceRsrY="; + types-aiobotocore-greengrass = buildTypesAiobotocorePackage "greengrass" "2.11.0" "sha256-hxGI5jMrscgxIF9Mke6s7tM0CDllDM4EHU57Q/EdK4Y="; - types-aiobotocore-greengrassv2 = buildTypesAiobotocorePackage "greengrassv2" "2.9.0" "sha256-IAlQveKtmaP02odHz8WQdNdWLFjz0gPr66HMSyOhnMs="; + types-aiobotocore-greengrassv2 = buildTypesAiobotocorePackage "greengrassv2" "2.11.0" "sha256-FiTsLALc/FvB4AsDWThiHfC2+M/J9mrS7GixrzqEv/M="; - types-aiobotocore-groundstation = buildTypesAiobotocorePackage "groundstation" "2.9.0" "sha256-qcjfgSR8lbOus3bcx/zlPSuGJ53B/Kuo1GCyU4VsYMo="; + types-aiobotocore-groundstation = buildTypesAiobotocorePackage "groundstation" "2.11.0" "sha256-aOvnThGfSamrhxPypI7MKIwd8zEMuhw/o/UeGxZmmDU="; - types-aiobotocore-guardduty = buildTypesAiobotocorePackage "guardduty" "2.9.0" "sha256-ecsB0KFITMENFwZX2EKpmToi1iYTeeRtrooAX3zXfpc="; + types-aiobotocore-guardduty = buildTypesAiobotocorePackage "guardduty" "2.11.0" "sha256-N1EyD7esyQYNdEk3qWcekH+/kpebR9kCgkBtiBuTLBU="; - types-aiobotocore-health = buildTypesAiobotocorePackage "health" "2.9.0" "sha256-nz7sUPMH8gVy5Oz+eatRd8iLfHKxcDHFRIqh80EuZWE="; + types-aiobotocore-health = buildTypesAiobotocorePackage "health" "2.11.0" "sha256-5P2n0Fgk2ESOm99uEdgZoe+Sba20vyCUsJdl0n5Aylk="; - types-aiobotocore-healthlake = buildTypesAiobotocorePackage "healthlake" "2.9.0" "sha256-S8Ds3s45HY0b007saVNSd0bfmvP3lbSNXEWUSBCsD/8="; + types-aiobotocore-healthlake = buildTypesAiobotocorePackage "healthlake" "2.11.0" "sha256-Y8+aQARCeYuIfuxLU31gjY5NGbp4p6Hpamgn0XtyuM0="; - types-aiobotocore-honeycode = buildTypesAiobotocorePackage "honeycode" "2.9.0" "sha256-+D9MESYNaP60NSl/5OKLVyHQQqikU4AHR6CV+wb1J58="; + types-aiobotocore-honeycode = buildTypesAiobotocorePackage "honeycode" "2.11.0" "sha256-E1L7Q11HLXscHOrxPss2fRNjEykdQRa28yKmGzvgIk4="; - types-aiobotocore-iam = buildTypesAiobotocorePackage "iam" "2.9.0" "sha256-b1VvcL7w/QC4svZCuDnP+OC+wOHWvrArUFLCw94S7Vw="; + types-aiobotocore-iam = buildTypesAiobotocorePackage "iam" "2.11.0" "sha256-/ukLk4kKSVtsJ8MNXw58bn6l+0mlAeDPVaO1EwiD9oA="; - types-aiobotocore-identitystore = buildTypesAiobotocorePackage "identitystore" "2.9.0" "sha256-qsU85n679BxZn3QgC0iSXnX+GANPhdUNQuSn5/WIjq4="; + types-aiobotocore-identitystore = buildTypesAiobotocorePackage "identitystore" "2.11.0" "sha256-JSGf1XwnNTVEEQR2KyI2krBqSEgEFw84IR1gdrdPdi0="; - types-aiobotocore-imagebuilder = buildTypesAiobotocorePackage "imagebuilder" "2.9.0" "sha256-U3PWbTbhSb48R1QPdzH1kLBI/Y6Iv1MnQz1IeuaQGj8="; + types-aiobotocore-imagebuilder = buildTypesAiobotocorePackage "imagebuilder" "2.11.0" "sha256-fOVxWpaqJVa1sjhEm4ZzgfdnxIQlIxUeORbLG5a4A0A="; - types-aiobotocore-importexport = buildTypesAiobotocorePackage "importexport" "2.9.0" "sha256-vnnAftGX1FxCdqz9ROaWcuaugIDXPfySRWVJieU33VA="; + types-aiobotocore-importexport = buildTypesAiobotocorePackage "importexport" "2.11.0" "sha256-YVcmN00t47DMu1L9toL4D33rWPfqkQa190RZJ9KcEbM="; - types-aiobotocore-inspector = buildTypesAiobotocorePackage "inspector" "2.9.0" "sha256-4tYe+EtujEhaVYbddCBuVSoGzai0+oiJPxkZ+fxxz9M="; + types-aiobotocore-inspector = buildTypesAiobotocorePackage "inspector" "2.11.0" "sha256-8A93fS8hGK8DMZB4t5fK68PDKzxrYmVDa+UCkhhMUxA="; - types-aiobotocore-inspector2 = buildTypesAiobotocorePackage "inspector2" "2.9.0" "sha256-VXniTrBibInkgj0jMWbb9RD8+Er9JUJ0xfAeWfwKdXE="; + types-aiobotocore-inspector2 = buildTypesAiobotocorePackage "inspector2" "2.11.0" "sha256-PqoT60G1gxTFoIx5ro2Q0aCnE9wCXTz5nZO+CVNzUKM="; - types-aiobotocore-internetmonitor = buildTypesAiobotocorePackage "internetmonitor" "2.9.0" "sha256-70lW/bzAirzq1ui/TtiFyKGesZMJ3Z8jwGgc3j0GoUk="; + types-aiobotocore-internetmonitor = buildTypesAiobotocorePackage "internetmonitor" "2.11.0" "sha256-YbIqecsNgBdG0ruscwRiPhOQHmejIDopHVDG7RfeYxA="; - types-aiobotocore-iot = buildTypesAiobotocorePackage "iot" "2.9.0" "sha256-j8i0uB5Ul4pxxMjyPdR94ssh1lus4MAR1Il31ueJiw0="; + types-aiobotocore-iot = buildTypesAiobotocorePackage "iot" "2.11.0" "sha256-XVJ6Te10TqF8y9+A7GN+fD751K4twpLvA4SmTSqc10I="; - types-aiobotocore-iot-data = buildTypesAiobotocorePackage "iot-data" "2.9.0" "sha256-9gblz4bopGjfFh3dgw0Jy7KVl8SNO+kE8l+l5mAgUws="; + types-aiobotocore-iot-data = buildTypesAiobotocorePackage "iot-data" "2.11.0" "sha256-XG1i5KepPmHiuCVPBK7YeQCEIM8ZqgnvIqEtcI90xN4="; - types-aiobotocore-iot-jobs-data = buildTypesAiobotocorePackage "iot-jobs-data" "2.9.0" "sha256-wykkgo48vdRg401bVR1TxCFFZXzESjeZM8Tc7wPVI6w="; + types-aiobotocore-iot-jobs-data = buildTypesAiobotocorePackage "iot-jobs-data" "2.11.0" "sha256-pPreUhwzaK65rZi/TjNX+HMFYF0pr53xKKrL7euxX84="; - types-aiobotocore-iot-roborunner = buildTypesAiobotocorePackage "iot-roborunner" "2.9.0" "sha256-ufnfEl+MjD/FAJ6ga2/rAvVrAbg+lCqwXxh58VDezxk="; + types-aiobotocore-iot-roborunner = buildTypesAiobotocorePackage "iot-roborunner" "2.11.0" "sha256-p3SLJJSU/dwGtZxRacLBVIagJ0b52j+IL4Mni2E0pVo="; - types-aiobotocore-iot1click-devices = buildTypesAiobotocorePackage "iot1click-devices" "2.9.0" "sha256-8TF24GJwZT8c0XBV15XOJqP4/pMPdanURcxnbVu8gRg="; + types-aiobotocore-iot1click-devices = buildTypesAiobotocorePackage "iot1click-devices" "2.11.0" "sha256-cTPED/zwtypKNxX2s3ZkOsVhGNvCRs26REiL+1EpCgI="; - types-aiobotocore-iot1click-projects = buildTypesAiobotocorePackage "iot1click-projects" "2.9.0" "sha256-IV8WCyvx2BVG5R3JUM2Q8r5n+qlVd/JiLUneW6DcQTw="; + types-aiobotocore-iot1click-projects = buildTypesAiobotocorePackage "iot1click-projects" "2.11.0" "sha256-vshDzMpLr67eVAXaQIFXk+EbLL9rnw0qTQDarvfXMk0="; - types-aiobotocore-iotanalytics = buildTypesAiobotocorePackage "iotanalytics" "2.9.0" "sha256-00lziwTYF800ejKy11K26LL1GpFi3e+57OQwQk4KN4s="; + types-aiobotocore-iotanalytics = buildTypesAiobotocorePackage "iotanalytics" "2.11.0" "sha256-pH5VdrjZbMgaPIzDdG02aUvTzfuQAVHt++Bf7V5pn68="; - types-aiobotocore-iotdeviceadvisor = buildTypesAiobotocorePackage "iotdeviceadvisor" "2.9.0" "sha256-/FnVwPFQTDi0XGYf1N5rzUUV9HLqy+xrDIdIlwbhEqY="; + types-aiobotocore-iotdeviceadvisor = buildTypesAiobotocorePackage "iotdeviceadvisor" "2.11.0" "sha256-fSlti+/6WF21b7wO24zK3PC4eftPnRvJM6MqFWMsnRU="; - types-aiobotocore-iotevents = buildTypesAiobotocorePackage "iotevents" "2.9.0" "sha256-Tsj+xTdDp2iP3suK6Y09hLwOOA80xJ/HH76f6rmbsSI="; + types-aiobotocore-iotevents = buildTypesAiobotocorePackage "iotevents" "2.11.0" "sha256-Nrx27vWS8QFcWGQ0fE/gUwbwJ8mj3seWnuauTuJvVDY="; - types-aiobotocore-iotevents-data = buildTypesAiobotocorePackage "iotevents-data" "2.9.0" "sha256-DPq/6llPXr+gUikXOqRuakoSL5pOLu21AXFabe2krk0="; + types-aiobotocore-iotevents-data = buildTypesAiobotocorePackage "iotevents-data" "2.11.0" "sha256-Rbw4qP/duKCSEvQMeGLMrT0dBiR9tTqzt9BOwgX0QYI="; - types-aiobotocore-iotfleethub = buildTypesAiobotocorePackage "iotfleethub" "2.9.0" "sha256-C56Ab8SK7LVCL0rQ0MaykTpfh+7q1GWvNpO1T6QLxYw="; + types-aiobotocore-iotfleethub = buildTypesAiobotocorePackage "iotfleethub" "2.11.0" "sha256-NNZk/u0xUBPZiWFtnwZRibnTVYVfHYFCBz4wZIsLOUM="; - types-aiobotocore-iotfleetwise = buildTypesAiobotocorePackage "iotfleetwise" "2.9.0" "sha256-Sdnl//LbfuifTiQXyvDprkaZi9/MG1i51QijsKNyvp0="; + types-aiobotocore-iotfleetwise = buildTypesAiobotocorePackage "iotfleetwise" "2.11.0" "sha256-x+dKJMb8cpGyFf3L2ErOrjt2xNEg9gasDbbdoVaTYSY="; 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+ types-aiobotocore-managedblockchain = buildTypesAiobotocorePackage "managedblockchain" "2.11.0" "sha256-njTF1fiVk8VezuzSRPNgA+HYZ089cXFTiGsci/yJ/RQ="; - types-aiobotocore-managedblockchain-query = buildTypesAiobotocorePackage "managedblockchain-query" "2.9.0" "sha256-0KUY9/My/m2dcxtw59yFZJHdCSZcrSfkdzHDgxBtEnE="; + types-aiobotocore-managedblockchain-query = buildTypesAiobotocorePackage "managedblockchain-query" "2.11.0" "sha256-reshSY32SwJFCMiT1lifRqQkxofXeDGwiEuVc+sA5jg="; - types-aiobotocore-marketplace-catalog = buildTypesAiobotocorePackage "marketplace-catalog" "2.9.0" "sha256-Bj1SMCXCljNw+1nakhnyvzqinyWliaE5YzvOaWrThfc="; + types-aiobotocore-marketplace-catalog = buildTypesAiobotocorePackage "marketplace-catalog" "2.11.0" "sha256-WM4dEyBqocZmCE3iG72SN6kR9u/InT3C2YY2PVl3drw="; - types-aiobotocore-marketplace-entitlement = buildTypesAiobotocorePackage "marketplace-entitlement" "2.9.0" "sha256-DDozTz6pHq/BHmU8ikS18G+uIXGldY2QsOOAMycvogA="; + types-aiobotocore-marketplace-entitlement = buildTypesAiobotocorePackage "marketplace-entitlement" "2.11.0" "sha256-HG7VV4MGdVbqNuLqM/es1WoKURm16hEI6soGUcTEOHY="; 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+ types-aiobotocore-medialive = buildTypesAiobotocorePackage "medialive" "2.11.0" "sha256-/+T6CRjrWy7ZDRJrqXB0urITj55s6OeJD8+BM65dMMg="; - types-aiobotocore-mediapackage = buildTypesAiobotocorePackage "mediapackage" "2.9.0" "sha256-E/5E4rIgle3Ge8h1jXg0EImztJamLWGTx3unCS3i3Wo="; + types-aiobotocore-mediapackage = buildTypesAiobotocorePackage "mediapackage" "2.11.0" "sha256-BxuwoFU+HEZDzh+PjmVK8NTqeBDMIThibFN0EMFwfTY="; - types-aiobotocore-mediapackage-vod = buildTypesAiobotocorePackage "mediapackage-vod" "2.9.0" "sha256-Ly2iBYcmbmfzFhjXwVpnVkLYiYBVnb2cIQLEQ1PHHPs="; + types-aiobotocore-mediapackage-vod = buildTypesAiobotocorePackage "mediapackage-vod" "2.11.0" "sha256-I9QfN8izkZyhtx5jlSCCKKUVtEqSXrTeXtmEvmLZU7o="; - types-aiobotocore-mediapackagev2 = buildTypesAiobotocorePackage "mediapackagev2" "2.9.0" "sha256-j7vEKKolHogemhfN8p3RDdLLUCIm4XK4LbgTN1RjHVc="; + types-aiobotocore-mediapackagev2 = buildTypesAiobotocorePackage "mediapackagev2" "2.11.0" "sha256-Z4QKqqeXtw1FihA9bJuUdbfah0bpUkuF80/MmMecgIo="; 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+ types-aiobotocore-medical-imaging = buildTypesAiobotocorePackage "medical-imaging" "2.11.0" "sha256-xauRwOuUy/b0NolFHz/ieBts6rNxfJKW7l/kap3XKKo="; - types-aiobotocore-memorydb = buildTypesAiobotocorePackage "memorydb" "2.9.0" "sha256-k0gaSat1viRrS1vH+xuGxO8zUAY5BucpbKFshKR/Gv0="; + types-aiobotocore-memorydb = buildTypesAiobotocorePackage "memorydb" "2.11.0" "sha256-P0kuhYy6Eqfq2E4Zk1bJWIziNSdB42hQk4MnuGMyKNg="; - types-aiobotocore-meteringmarketplace = buildTypesAiobotocorePackage "meteringmarketplace" "2.9.0" "sha256-MS5ZMEW0iaHhjIgqTXLNNuYEBN9L5djCQupJfayNLx4="; + types-aiobotocore-meteringmarketplace = buildTypesAiobotocorePackage "meteringmarketplace" "2.11.0" "sha256-GyF+vCtU16QqjNX2CYCIzFDnOCkjDpMBYNnBx7n5uvg="; - types-aiobotocore-mgh = buildTypesAiobotocorePackage "mgh" "2.9.0" "sha256-g0uAmEucyImVVykA5g4BBclrd/n8Cl9hm2vkPpL21Vo="; + types-aiobotocore-mgh = buildTypesAiobotocorePackage "mgh" "2.11.0" "sha256-eeXyYEsc8+Z50Fi5BPXQ655IWnRb7V2ztUz6Dg4Bfl8="; - types-aiobotocore-mgn = buildTypesAiobotocorePackage "mgn" "2.9.0" "sha256-xNecFvFbcQGCeE4ImLQYAB+/gv7ThrQC/E0CPoslcdA="; 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+ types-aiobotocore-organizations = buildTypesAiobotocorePackage "organizations" "2.11.0" "sha256-fGyv3mf9POvGFB+JpHldbxMfi1kUiS2YNkpVabgrDIw="; - types-aiobotocore-osis = buildTypesAiobotocorePackage "osis" "2.9.0" "sha256-0Dxf0aa76MBWX5TSdSWoFemHJ7wKqzj+vPDgZ9yMQTY="; + types-aiobotocore-osis = buildTypesAiobotocorePackage "osis" "2.11.0" "sha256-c6XSyeAa80f5TnoyMvsAmqESpqaq+y94sfRXF6cFpt8="; - types-aiobotocore-outposts = buildTypesAiobotocorePackage "outposts" "2.9.0" "sha256-62W37n830OMhhCTsEP1r5mrCY8MZZM+OPgvZ/ox4S70="; + types-aiobotocore-outposts = buildTypesAiobotocorePackage "outposts" "2.11.0" "sha256-cQNQz1xgCbLiKWR1i1sgDmc1unP+7IoF1c6ZwH1G7SI="; - types-aiobotocore-panorama = buildTypesAiobotocorePackage "panorama" "2.9.0" "sha256-OBQI+qRwV3nB29WFuIPxXIc2fV5RaMaaCiJtYTKp28A="; + types-aiobotocore-panorama = buildTypesAiobotocorePackage "panorama" "2.11.0" "sha256-h4R5ErD7YDqOYLxRgNioB4dhL9b+OwiA38AM3EoXapE="; - types-aiobotocore-payment-cryptography = buildTypesAiobotocorePackage "payment-cryptography" "2.9.0" "sha256-3qawANwA/wOWqNl3Q6RKS2CLb1pw8K6dbX4jW2MAHEc="; + types-aiobotocore-payment-cryptography = buildTypesAiobotocorePackage "payment-cryptography" "2.11.0" "sha256-VgJWOfWEdZI+9udvORUBl+cbAlBAb2YW3+rqyqOIGdk="; - types-aiobotocore-payment-cryptography-data = buildTypesAiobotocorePackage "payment-cryptography-data" "2.9.0" "sha256-adLvjvZNRcNM07nvr3Frh5a2X7wgOuxdZ21iLnw9crU="; + types-aiobotocore-payment-cryptography-data = buildTypesAiobotocorePackage "payment-cryptography-data" "2.11.0" "sha256-6S/4awBPSegC+GeEysxFmne+5K4I6UlQdnnK6q/7kBE="; - types-aiobotocore-personalize = buildTypesAiobotocorePackage "personalize" "2.9.0" "sha256-apNRfsAdZHuqs3SMUgnuZun8GbCog/5s7MSdyVIHz5Y="; + types-aiobotocore-personalize = buildTypesAiobotocorePackage "personalize" "2.11.0" "sha256-k78zJdv3w79v1ocoem8d1VuBKTga7iPpPYUw0QyjHkU="; - types-aiobotocore-personalize-events = buildTypesAiobotocorePackage "personalize-events" "2.9.0" "sha256-sxcApDREahAvxXswhv7iZkrYXcjdOGa//SFSvtlHMJ0="; + types-aiobotocore-personalize-events = buildTypesAiobotocorePackage "personalize-events" "2.11.0" "sha256-klAYYRH+DUBzs/JISvYAVNXedeje1yhyd80FASAOwzk="; - types-aiobotocore-personalize-runtime = buildTypesAiobotocorePackage "personalize-runtime" "2.9.0" "sha256-eurE8IY3eyuUjj3rhT59xu0KHRnbJy/OL05XKBov0Y8="; + types-aiobotocore-personalize-runtime = buildTypesAiobotocorePackage "personalize-runtime" "2.11.0" "sha256-HpVZnkJvQgK9Mz+J9ZmJfDGoj9REpZqFjJBkfkvI3Ww="; - types-aiobotocore-pi = buildTypesAiobotocorePackage "pi" "2.9.0" "sha256-bWg/J1JyM4pkKalsMqUMPMYJ+T+SSzR4P0+VJTSodWM="; + types-aiobotocore-pi = buildTypesAiobotocorePackage "pi" "2.11.0" "sha256-icSP1n2t7qcZAt0EK6/WK24T/JJfNzFzxmX3R8KMqYc="; - types-aiobotocore-pinpoint = buildTypesAiobotocorePackage "pinpoint" "2.9.0" "sha256-jKAsxMwQCI/DOY8HiRmmXdVqWAoVD4ULdwSoU18kmJs="; + types-aiobotocore-pinpoint = buildTypesAiobotocorePackage "pinpoint" "2.11.0" "sha256-UNBJarFF4t5NjLKLqdYbr7d+LPqanzZz5HtO0zr/hzQ="; - types-aiobotocore-pinpoint-email = buildTypesAiobotocorePackage "pinpoint-email" "2.9.0" "sha256-JgTZiFxdBNTAHT7X3LdTTEvI5Z+MjF6JcZ8zbjZxsSA="; + types-aiobotocore-pinpoint-email = buildTypesAiobotocorePackage "pinpoint-email" "2.11.0" "sha256-bxmMClb6G0+/Sc1c8YrhmPpTlfM26KiFxfIiRXm3zwY="; - types-aiobotocore-pinpoint-sms-voice = buildTypesAiobotocorePackage "pinpoint-sms-voice" "2.9.0" "sha256-HGsiBhxwTVKUFQgGlx17n0/HUEL7/FIHgxKxFg4Vsc8="; + types-aiobotocore-pinpoint-sms-voice = buildTypesAiobotocorePackage "pinpoint-sms-voice" "2.11.0" "sha256-0DafiqdMAXbuxVXg8vz3uHuiiDANvOLAMnClSt6yglY="; - types-aiobotocore-pinpoint-sms-voice-v2 = buildTypesAiobotocorePackage "pinpoint-sms-voice-v2" "2.9.0" "sha256-fXszL3FutdKRAkh3gWvu5xiGlvy3Nn/r0MCKYW5UAYg="; + types-aiobotocore-pinpoint-sms-voice-v2 = buildTypesAiobotocorePackage "pinpoint-sms-voice-v2" "2.11.0" "sha256-QRtJLMtoD7m7p+HPYzpPsaFapejDGjHPrZDFTbfAATc="; - types-aiobotocore-pipes = buildTypesAiobotocorePackage "pipes" "2.9.0" "sha256-Qs9ndgWnw7yUvKJcI36i8c1imwWvX3isJocEYjj93Ls="; + types-aiobotocore-pipes = buildTypesAiobotocorePackage "pipes" "2.11.0" "sha256-S774aDCAbVL40vFcerr3IrO8jejU3oM5ECTO62PvK+8="; - types-aiobotocore-polly = buildTypesAiobotocorePackage "polly" "2.9.0" "sha256-9PNsD5t7iZh+Bcnbqbq1RV7IMbDT/IptteaUsJB+AKs="; + types-aiobotocore-polly = buildTypesAiobotocorePackage "polly" "2.11.0" "sha256-h0MgZfxNlzEnqgN1AgX2mEbN45O+RToVEyEaM4SUrnA="; - types-aiobotocore-pricing = buildTypesAiobotocorePackage "pricing" "2.9.0" "sha256-zYgDgmqCshI/LbmZYO+X9+sq1Bi3xlBDugnqVfewu1Q="; + types-aiobotocore-pricing = buildTypesAiobotocorePackage "pricing" "2.11.0" "sha256-EUXjUigF6Ntifj0QGvEo/i99lZlIujbxNAPAJTCJi40="; - types-aiobotocore-privatenetworks = buildTypesAiobotocorePackage "privatenetworks" "2.9.0" "sha256-QX/fr036L4eVPdUnUexEDJc++oIx8WJRwI1YmnFuYqc="; + types-aiobotocore-privatenetworks = buildTypesAiobotocorePackage "privatenetworks" "2.11.0" "sha256-mnAD4olYuQG1hIurWbfWj8yVZipellgH9werYLZCVHc="; - types-aiobotocore-proton = buildTypesAiobotocorePackage "proton" "2.9.0" "sha256-zx4Zt8J/xgql2vu/tZgwmFLWq+2bhhq2u6q08L5nkBY="; + types-aiobotocore-proton = buildTypesAiobotocorePackage "proton" "2.11.0" "sha256-MlK0fPBPZzHheJ/oaL4ficKVUhQnm+ERN3G7fuqmG6s="; - types-aiobotocore-qldb = buildTypesAiobotocorePackage "qldb" "2.9.0" "sha256-0Ob22rt0ZfEuoez9knN5BegTWTI+T0cwH96rkKHWVWg="; + types-aiobotocore-qldb = buildTypesAiobotocorePackage "qldb" "2.11.0" "sha256-DqdxwO+VCX4eqcecT3kQSaUZa0XWJHICKeqE3CyuPOE="; - types-aiobotocore-qldb-session = buildTypesAiobotocorePackage "qldb-session" "2.9.0" "sha256-TVm24eYojgTrdWzFKgL2pkjekx9Bd8cqTKVGybs+2Bw="; + types-aiobotocore-qldb-session = buildTypesAiobotocorePackage "qldb-session" "2.11.0" "sha256-81KbDwWUcjY7frYXgpH2o+U8mi8fMxP1X0VzFUh7o3o="; - types-aiobotocore-quicksight = buildTypesAiobotocorePackage "quicksight" "2.9.0" "sha256-RTV8LwRM/lNYFCx4L2PnJhXHCjeDHKsMmHATcUOd2R8="; + types-aiobotocore-quicksight = buildTypesAiobotocorePackage "quicksight" "2.11.0" "sha256-riJj0umKScbQ9MCV88fNeHiuLcigzJqtWRgIhcuI3Ww="; - types-aiobotocore-ram = buildTypesAiobotocorePackage "ram" "2.9.0" "sha256-twdBnpMqPTyb+tVD7Qa37C29hds3UM7Y6/63qr4IBxM="; + types-aiobotocore-ram = buildTypesAiobotocorePackage "ram" "2.11.0" "sha256-taaVPQtZfF1L9bCSL0ppyGy8YZE4pvJA2hK0YAcE2Oc="; - types-aiobotocore-rbin = buildTypesAiobotocorePackage "rbin" "2.9.0" "sha256-FxYiwMon/E3g5uphHutjXsZ4gvhyoy4BE7gfX9v9KOY="; + types-aiobotocore-rbin = buildTypesAiobotocorePackage "rbin" "2.11.0" "sha256-nm1s53U2rmuw4Ko21DOW11neknjfBAyq4S0dBzJQRPc="; - types-aiobotocore-rds = buildTypesAiobotocorePackage "rds" "2.9.0" "sha256-4UwgKkbnHgSrDIjVgp729mt1LWtTTmr4Vqk+MGkyHDg="; + types-aiobotocore-rds = buildTypesAiobotocorePackage "rds" "2.11.0" "sha256-UlpkN8g+rBmf9hu0MrWTaH4S1SaNQK6mFeBw65hF4Nk="; - types-aiobotocore-rds-data = buildTypesAiobotocorePackage "rds-data" "2.9.0" "sha256-1bOOeQqg9AdlHIuznEUF2Q8+1iN4ZwvFfRMnzAew9xQ="; + types-aiobotocore-rds-data = buildTypesAiobotocorePackage "rds-data" "2.11.0" "sha256-rxdvCAEeoUqduN/56yMNxZnfadedkTaPpg7+XJhcHGc="; - types-aiobotocore-redshift = buildTypesAiobotocorePackage "redshift" "2.9.0" "sha256-uUhg8pu/tPO5ufx3oAA803ddLMIJb8ZRFqYYY7asprU="; + types-aiobotocore-redshift = buildTypesAiobotocorePackage "redshift" "2.11.0" "sha256-AHUOMZn6kUKnY9BAteySrzFr8KC8kE3nolHEZ+gn+Tk="; - types-aiobotocore-redshift-data = buildTypesAiobotocorePackage "redshift-data" "2.9.0" "sha256-HtJan10OMZZP0DTFw4b4iadl+ufHbbCGkypk6gTHevA="; + types-aiobotocore-redshift-data = buildTypesAiobotocorePackage "redshift-data" "2.11.0" "sha256-YsFxhXd2xxW4vT2zDCHRCzFOeINKL7JypENiTcoAJ+I="; - types-aiobotocore-redshift-serverless = buildTypesAiobotocorePackage "redshift-serverless" "2.9.0" "sha256-TL4NDdKm50bgUZV+bkxqRY1P5C48tT7+E4wiNMgMLG4="; + types-aiobotocore-redshift-serverless = buildTypesAiobotocorePackage "redshift-serverless" "2.11.0" "sha256-IuaCCYxuLrrg6JPQQD98EiW/VSxs9I0Aidiv+UDp/ow="; - types-aiobotocore-rekognition = buildTypesAiobotocorePackage "rekognition" "2.9.0" "sha256-zAYEPrQ5SexvufL2aSagLLWx2VPFURLRu+YwL/m4cWA="; + types-aiobotocore-rekognition = buildTypesAiobotocorePackage "rekognition" "2.11.0" "sha256-9hVBbXOYT+qn6JwUJyJFIsMemvcQ7DyxxlbBKxtTyIU="; - types-aiobotocore-resiliencehub = buildTypesAiobotocorePackage "resiliencehub" "2.9.0" "sha256-3C1PcG2DzbRT3Yrloipng73tZKdcGiYniU5n095Lodc="; + types-aiobotocore-resiliencehub = buildTypesAiobotocorePackage "resiliencehub" "2.11.0" "sha256-rshRL2vH9hHEeYbWbFlnDkotiQezo9kLIjnK+Kioocs="; - types-aiobotocore-resource-explorer-2 = buildTypesAiobotocorePackage "resource-explorer-2" "2.9.0" "sha256-UzzHOnTX2tLVEY+xJVrDu4I8/RP8/rx2rNZcINs4DOM="; + types-aiobotocore-resource-explorer-2 = buildTypesAiobotocorePackage "resource-explorer-2" "2.11.0" "sha256-yyoFe/7AqXu9H1hZs6yfTGt+d+peDu1GQEWQ6+G2gfE="; - types-aiobotocore-resource-groups = buildTypesAiobotocorePackage "resource-groups" "2.9.0" "sha256-w7MJhBAtOsbZqZQlJdFiP4q8qpk7nc1YEXCgbw3Fd20="; + types-aiobotocore-resource-groups = buildTypesAiobotocorePackage "resource-groups" "2.11.0" "sha256-v20pt5uv3Hj7xek3Xm8X2GLkRk+vRZpqZSENLOYx1hY="; - types-aiobotocore-resourcegroupstaggingapi = buildTypesAiobotocorePackage "resourcegroupstaggingapi" "2.9.0" "sha256-dkRibrcQpSnU4ChhRSibjQbosbOy6wd42P91MVrD7+o="; + types-aiobotocore-resourcegroupstaggingapi = buildTypesAiobotocorePackage "resourcegroupstaggingapi" "2.11.0" "sha256-qCVYQmM2F2uYY7+LbyrUGaFFf0/s6wyYilwrHckyPag="; - types-aiobotocore-robomaker = buildTypesAiobotocorePackage "robomaker" "2.9.0" "sha256-n5zLgWXRlVz+dXVOeEg4ZVq2mCiBDB/4pJfHeFF6Z5Q="; + types-aiobotocore-robomaker = buildTypesAiobotocorePackage "robomaker" "2.11.0" "sha256-2s48UBjDJqtQ1iBr2yV6rvqoGNsLBpNaEP1WNsp+qPg="; - types-aiobotocore-rolesanywhere = buildTypesAiobotocorePackage "rolesanywhere" "2.9.0" "sha256-HNjHfM7Oi4HKmYL5Sgwqjg2hWyKmLXYq1nDwhmVN6cs="; + types-aiobotocore-rolesanywhere = buildTypesAiobotocorePackage "rolesanywhere" "2.11.0" "sha256-ci+uWwMNglRm2inRUzGtX8F27Bv2KaRZNNjHxMT+gnk="; - types-aiobotocore-route53 = buildTypesAiobotocorePackage "route53" "2.9.0" "sha256-d54iOVNPFrwS9Cw/uDZO7CCIsj2QzeKkgKy+cWehfcQ="; + types-aiobotocore-route53 = buildTypesAiobotocorePackage "route53" "2.11.0" "sha256-e4jmows4W8JjUbBr0LhteSRp/V8LBk/em2SYWFTHhfk="; - types-aiobotocore-route53-recovery-cluster = buildTypesAiobotocorePackage "route53-recovery-cluster" "2.9.0" "sha256-MLPzjWP6xBrczesskwbvKVbjFT8ZC8MV7jgkR/AAxu0="; + types-aiobotocore-route53-recovery-cluster = buildTypesAiobotocorePackage "route53-recovery-cluster" "2.11.0" "sha256-mK5CXukLRr3978LJBAHn/KWOxiIf8zpBZ1ETiXIC/9Y="; - types-aiobotocore-route53-recovery-control-config = buildTypesAiobotocorePackage "route53-recovery-control-config" "2.9.0" "sha256-nl1PsCKbjiizg+oPVkYvkb1iuN/egoBQp6EN1BWcrQw="; + types-aiobotocore-route53-recovery-control-config = buildTypesAiobotocorePackage "route53-recovery-control-config" "2.11.0" "sha256-ISNRJ5/A+/QzuIqWoRQEnPeld7INZGvTcuqfQWK1FJY="; - types-aiobotocore-route53-recovery-readiness = buildTypesAiobotocorePackage "route53-recovery-readiness" "2.9.0" "sha256-cFWmcjptrX/infPksVRugvHdnKFU0SG/90OU+HPl5ZY="; + types-aiobotocore-route53-recovery-readiness = buildTypesAiobotocorePackage "route53-recovery-readiness" "2.11.0" "sha256-TwXt40LBCATVrunDjm17phBbcpMHU8HkWQ7/avBozvo="; - types-aiobotocore-route53domains = buildTypesAiobotocorePackage "route53domains" "2.9.0" "sha256-1LucO4/jgl1YpMlbYuIJXrhxkLx6tdKTMaoMAWTDybM="; + types-aiobotocore-route53domains = buildTypesAiobotocorePackage "route53domains" "2.11.0" "sha256-kxLh2DKFccRxmD2uHTlrf62qasZ/FuRQOLjhzTa7nX4="; - types-aiobotocore-route53resolver = buildTypesAiobotocorePackage "route53resolver" "2.9.0" "sha256-s8DoTrQEjGpqwwYlwEkoCNopDow+M7rbQZCqU2aBdZ4="; + types-aiobotocore-route53resolver = buildTypesAiobotocorePackage "route53resolver" "2.11.0" "sha256-jCqxuCWdgTbV+ul+vtauiWaA/cjiIpbjlYRrfaV6zQY="; - types-aiobotocore-rum = buildTypesAiobotocorePackage "rum" "2.9.0" "sha256-dRncp/7Z8FeJ/sBqHFHO7z4XZKgWeOuRPGzXf4djzg4="; + types-aiobotocore-rum = buildTypesAiobotocorePackage "rum" "2.11.0" "sha256-/jG0DPAYhycTN0VKAO2i2EO4htRnLMbUHwLxND5SiDw="; - types-aiobotocore-s3 = buildTypesAiobotocorePackage "s3" "2.9.0" "sha256-KwNH+X1Kl61L+iuK+XtZWGhTl71RpHyJhCfB+Hw1IyU="; + types-aiobotocore-s3 = buildTypesAiobotocorePackage "s3" "2.11.0" "sha256-287Znbh373X2EgFilTvFjQMYI8ol+EHmMS0krMsCMIo="; - types-aiobotocore-s3control = buildTypesAiobotocorePackage "s3control" "2.9.0" "sha256-/earpJzKe0zF+fjxUa/Z6JKmxxWfOlMngxlia6aTFxs="; + types-aiobotocore-s3control = buildTypesAiobotocorePackage "s3control" "2.11.0" "sha256-X//a8jbgKvgYb10yLsha5Ekw7JfBZ4ZJDpZtdj8DQy4="; - types-aiobotocore-s3outposts = buildTypesAiobotocorePackage "s3outposts" "2.9.0" "sha256-lLp/gUu5jrOJ6ZXQ4qKVfREsN4WYl/h9zgfgTUtYiiQ="; + types-aiobotocore-s3outposts = buildTypesAiobotocorePackage "s3outposts" "2.11.0" "sha256-SZO4Xo3+xZjtHGKCWMgcV9VgRkFsLEEqzWq3uKul340="; - types-aiobotocore-sagemaker = buildTypesAiobotocorePackage "sagemaker" "2.9.0" "sha256-kAunITSH13bGe6XWTlG/QSelzDFnINih/o/zuFR34us="; + types-aiobotocore-sagemaker = buildTypesAiobotocorePackage "sagemaker" "2.11.0" "sha256-fOqlUtOyJR5EpBc24tJwRJakp8OpnoxIfQgdEFlFNjw="; - types-aiobotocore-sagemaker-a2i-runtime = buildTypesAiobotocorePackage "sagemaker-a2i-runtime" "2.9.0" "sha256-U9cVOg2CkVclCqSqr4okJJSC0ZmGIH390KTNKMJUBhw="; + types-aiobotocore-sagemaker-a2i-runtime = buildTypesAiobotocorePackage "sagemaker-a2i-runtime" "2.11.0" "sha256-SCfymFM/imhxod2yTR4wWrm+bNQ4Ey+3GhXND1pigwk="; - types-aiobotocore-sagemaker-edge = buildTypesAiobotocorePackage "sagemaker-edge" "2.9.0" "sha256-Oe78n3fu201OmZpPb4cjhLY1x1KTT5MYLXdy9M4KkOE="; + types-aiobotocore-sagemaker-edge = buildTypesAiobotocorePackage "sagemaker-edge" "2.11.0" "sha256-vZd4RpmMnviYbcEwAff0DmMFsIcHiYV7to1K4bgP8D8="; - types-aiobotocore-sagemaker-featurestore-runtime = buildTypesAiobotocorePackage "sagemaker-featurestore-runtime" "2.9.0" "sha256-xmRI5TMR99TROVf1CPif60NeLhCqNpb6Lt662fGK+WY="; + types-aiobotocore-sagemaker-featurestore-runtime = buildTypesAiobotocorePackage "sagemaker-featurestore-runtime" "2.11.0" "sha256-+4g0HkfkBA2Vi7VHUJEWRyShCVool+21bEpn/t9QNUo="; - types-aiobotocore-sagemaker-geospatial = buildTypesAiobotocorePackage "sagemaker-geospatial" "2.9.0" "sha256-OPIq8UKHJNDe7lMbHkHt4z57k3L7y6ys0a9TSJiiFIg="; + types-aiobotocore-sagemaker-geospatial = buildTypesAiobotocorePackage "sagemaker-geospatial" "2.11.0" "sha256-SP4nUssP7jYS/huBwNf9vVcBKBKSH4X0jJEjWXNC3Fc="; - types-aiobotocore-sagemaker-metrics = buildTypesAiobotocorePackage "sagemaker-metrics" "2.9.0" "sha256-oyBG62dmdxbZaIAIb5cXq+qWYD/yDPHvHu6Z+wOg9Jc="; + types-aiobotocore-sagemaker-metrics = buildTypesAiobotocorePackage "sagemaker-metrics" "2.11.0" "sha256-e/NlinVQRHRIEqdN4MeK9yD2WkBMgIZazrGvfsXLiWk="; - types-aiobotocore-sagemaker-runtime = buildTypesAiobotocorePackage "sagemaker-runtime" "2.9.0" "sha256-KDkf3G/inaFjLe0jfgdUQ31ugbj8mmgYzJKvb1W15lA="; + types-aiobotocore-sagemaker-runtime = buildTypesAiobotocorePackage "sagemaker-runtime" "2.11.0" "sha256-a1yu68zlG6N+ezicX6aLH99A2kYLNCPV1cXMYEeI2ok="; - types-aiobotocore-savingsplans = buildTypesAiobotocorePackage "savingsplans" "2.9.0" "sha256-f4DbYsiuX1xrLMZ9foOyJC5NhVtMym3mnj8RD+MvlIo="; + types-aiobotocore-savingsplans = buildTypesAiobotocorePackage "savingsplans" "2.11.0" "sha256-Q3t3g2FiolXVGGlCAodY1dweI9WlNaYESvFLB7vzyCk="; - types-aiobotocore-scheduler = buildTypesAiobotocorePackage "scheduler" "2.9.0" "sha256-HuXw6MBuBzaDpf6HfR++F8LC+5WgpThF+BQz2nO1LHQ="; + types-aiobotocore-scheduler = buildTypesAiobotocorePackage "scheduler" "2.11.0" "sha256-bLwQkmNKbuqUyKh8QlVDsDfx1pcgC78K7B2vumrJZNc="; - types-aiobotocore-schemas = buildTypesAiobotocorePackage "schemas" "2.9.0" "sha256-du/fn168xn0Nzox8vbEOJXnIcRBWatgihJZRGTzy4pE="; + types-aiobotocore-schemas = buildTypesAiobotocorePackage "schemas" "2.11.0" "sha256-giit/TrRCMiaT/qJzyvKFS8dGnJh9VrTw4CRv76rXVo="; - types-aiobotocore-sdb = buildTypesAiobotocorePackage "sdb" "2.9.0" "sha256-zgWv9fUOlUWDeBSZwHLG1Oc8CRY7uK/Hu3EJAJsVcEQ="; 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- types-aiobotocore-translate = buildTypesAiobotocorePackage "translate" "2.9.0" "sha256-6CJeDPdwIWQMGBkAtxO8PJclkXGeY5iTbpNlWgGFcKs="; + types-aiobotocore-translate = buildTypesAiobotocorePackage "translate" "2.11.0" "sha256-MqggOwWPYz1wTDvGL+64dukGHNisK1S/ZJnkec9WOkc="; - types-aiobotocore-verifiedpermissions = buildTypesAiobotocorePackage "verifiedpermissions" "2.9.0" "sha256-abQQMTXvqkZ4V/82XnYRA4HXqPqYVDFlyn97stA6/6Y="; + types-aiobotocore-verifiedpermissions = buildTypesAiobotocorePackage "verifiedpermissions" "2.11.0" "sha256-/+83iitPdMoKHY8sbYoBgN+KtMd3GjcBtiBdM0vnbbc="; - types-aiobotocore-voice-id = buildTypesAiobotocorePackage "voice-id" "2.9.0" "sha256-f66AVRU3jXSzWWiDO1CWS+F742WmhcGlf2IXvAOPwjI="; + types-aiobotocore-voice-id = buildTypesAiobotocorePackage "voice-id" "2.11.0" "sha256-iEy+2H7bRE/kbX3EMpdLWu4DYMNv4ksyfANaY/Tc6x0="; - types-aiobotocore-vpc-lattice = buildTypesAiobotocorePackage "vpc-lattice" "2.9.0" "sha256-sA6mKo/co3Z9hPha4kHHUud9AO/CLhEijh66wlp2uOk="; + types-aiobotocore-vpc-lattice = buildTypesAiobotocorePackage "vpc-lattice" "2.11.0" "sha256-MSLS2rEhdAHWxjdU+ZRWVPR9ZtAeMcwyifULhx0CTno="; - types-aiobotocore-waf = buildTypesAiobotocorePackage "waf" "2.9.0" "sha256-Js6x76EgqKu4IJcgG8FpMge4nfhlKj/7HRZjgi/f5tA="; + types-aiobotocore-waf = buildTypesAiobotocorePackage "waf" "2.11.0" "sha256-A/YgoRKpFSfE5/eu2Gts1u0U/p4D+j2xLXa2fU+f1Kc="; - types-aiobotocore-waf-regional = buildTypesAiobotocorePackage "waf-regional" "2.9.0" "sha256-YCTW8axxeeDNCH57xUSKsRXNyproIYsUqHN7Kb/c9Lc="; + types-aiobotocore-waf-regional = buildTypesAiobotocorePackage "waf-regional" "2.11.0" "sha256-WTsE8VJc4EWTA5G/5B7mHje4VDZCSbBsFxwIDkExq2A="; - types-aiobotocore-wafv2 = buildTypesAiobotocorePackage "wafv2" "2.9.0" "sha256-8lZTtK93+IQyfQ/QQ3WSgpD3VlzPq5aQn/Avife21nI="; + types-aiobotocore-wafv2 = buildTypesAiobotocorePackage "wafv2" "2.11.0" "sha256-Zzr96zjueB5KT37r0feaTj18kd0IwVp9jXMjsIuWhCE="; - types-aiobotocore-wellarchitected = buildTypesAiobotocorePackage "wellarchitected" "2.9.0" "sha256-BzafdUAL6TrYMuP1TwPXTS/aOlhjZbM99ZtEQ3wxQV0="; + types-aiobotocore-wellarchitected = buildTypesAiobotocorePackage "wellarchitected" "2.11.0" "sha256-p/WikTCNYa/Bwv7PXOKzsHX5rBBtquKWf+RPD5fnbxE="; - types-aiobotocore-wisdom = buildTypesAiobotocorePackage "wisdom" "2.9.0" "sha256-WkpW8vk7U4WkqeX13RhzahEtZrdQ49X2NoeSIpRQMQM="; + types-aiobotocore-wisdom = buildTypesAiobotocorePackage "wisdom" "2.11.0" "sha256-CqBfDmR5WUUTK0jH+ihiJpugjEZtY5zvL9hZ9Wk+Jy8="; - types-aiobotocore-workdocs = buildTypesAiobotocorePackage "workdocs" "2.9.0" "sha256-kLp8nHOB6A47nmAd9jXwr+nXS8xnv10eGkI/zd53wRI="; + types-aiobotocore-workdocs = buildTypesAiobotocorePackage "workdocs" "2.11.0" "sha256-XEbZfg7jxW9PwZdsQ9XzY3/i2DIV9yUBlaCbubDcFjU="; - types-aiobotocore-worklink = buildTypesAiobotocorePackage "worklink" "2.9.0" "sha256-4g39qn3h//b4/Dd+C0zasVvmyENfkvhPIj+EklHf9iY="; + types-aiobotocore-worklink = buildTypesAiobotocorePackage "worklink" "2.11.0" "sha256-nNQ7Dq1qENRdoIfzVULZZ3JDvc6EEMJF2yJO6iXCMVg="; - types-aiobotocore-workmail = buildTypesAiobotocorePackage "workmail" "2.9.0" "sha256-WSAQekT3lmS/2miTbK0eYWde7eDIleY7yP+1HdMcCXM="; + types-aiobotocore-workmail = buildTypesAiobotocorePackage "workmail" "2.11.0" "sha256-abkID9Xww52uDpNABuUI9v3fknUNBkZ+fMjAr9mWv+0="; - types-aiobotocore-workmailmessageflow = buildTypesAiobotocorePackage "workmailmessageflow" "2.9.0" "sha256-Y7scQU1qMyGMrkOdmpJuRKdxR9nlsKsoiDCBT1Qa1F4="; + types-aiobotocore-workmailmessageflow = buildTypesAiobotocorePackage "workmailmessageflow" "2.11.0" "sha256-57+QvrdJTJK9psRohrA4HfPuTVy1AKVK7YUWGHOX0jU="; - types-aiobotocore-workspaces = buildTypesAiobotocorePackage "workspaces" "2.9.0" "sha256-AIIU5d6D+hVd36Qo0hpq8tNakoCVpmqjYKVgGUjtVOU="; + types-aiobotocore-workspaces = buildTypesAiobotocorePackage "workspaces" "2.11.0" "sha256-xs8/fAuglhlUQcHKC5m+tbkjYKvN5EEUQV7lzrnaFUc="; - types-aiobotocore-workspaces-web = buildTypesAiobotocorePackage "workspaces-web" "2.9.0" "sha256-fchpLQ4yB6LzpzvKJBraHIFEMKsMltWoMzihUkwUedg="; + types-aiobotocore-workspaces-web = buildTypesAiobotocorePackage "workspaces-web" "2.11.0" "sha256-RvEVbetUhE54iLlEvloG5F+9tkmmSFCUgwoXVRSDfX0="; - types-aiobotocore-xray = buildTypesAiobotocorePackage "xray" "2.9.0" "sha256-L+y55NnvYeTgXVp+DJ/dgKPQYBIFsu48qgRjwAX7nBs="; + types-aiobotocore-xray = buildTypesAiobotocorePackage "xray" "2.11.0" "sha256-COUTKrzFCLI8VSa/MBNPAeBkgGAlhBvOayyYqnYHaNQ="; } diff --git a/pkgs/development/python-modules/types-aiobotocore/default.nix b/pkgs/development/python-modules/types-aiobotocore/default.nix index 4bfe704971758..e69d9ab8e5dff 100644 --- a/pkgs/development/python-modules/types-aiobotocore/default.nix +++ b/pkgs/development/python-modules/types-aiobotocore/default.nix @@ -364,12 +364,12 @@ buildPythonPackage rec { pname = "types-aiobotocore"; - version = "2.9.0"; + version = "2.11.2"; pyproject = true; src = fetchPypi { inherit pname version; - hash = "sha256-QSZDFXiVEXFHTE7FrLZVUeLOOyPTG96PIMg9lziiwDc="; + hash = "sha256-bnYg/u2BvG3/iBJ5xKQwiMG/n8vREpnOGHYaSlwlnRs="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/types-aiobotocore/update.sh b/pkgs/development/python-modules/types-aiobotocore/update.sh index 455488fb793e2..84fd0c6128010 100644 --- a/pkgs/development/python-modules/types-aiobotocore/update.sh +++ b/pkgs/development/python-modules/types-aiobotocore/update.sh @@ -5,7 +5,7 @@ set -eu -o pipefail source_file=pkgs/development/python-modules/types-aiobotocore-packages/default.nix -version="2.9.0" +version="2.11.0" nix-update python311Packages.types-aiobotocore --commit --build diff --git a/pkgs/development/python-modules/types-awscrt/default.nix b/pkgs/development/python-modules/types-awscrt/default.nix index d35cfcc2afe96..c2adf4dd7b7b8 100644 --- a/pkgs/development/python-modules/types-awscrt/default.nix +++ b/pkgs/development/python-modules/types-awscrt/default.nix @@ -7,7 +7,7 @@ buildPythonPackage rec { pname = "types-awscrt"; - version = "0.20.0"; + version = "0.20.3"; pyproject = true; disabled = pythonOlder "3.7"; @@ -15,7 +15,7 @@ buildPythonPackage rec { src = fetchPypi { pname = "types_awscrt"; inherit version; - hash = "sha256-mXeMlS4erhDMelNGhBMAEXcCbJQ0NFvwASC7LqW3kQk="; + hash = "sha256-BqhZGJoynKjmbVbO7vI5FIjjm4ePvSFB8RXqtNQW/iI="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/types-dateutil/default.nix b/pkgs/development/python-modules/types-dateutil/default.nix index 92dfde3b5e6f7..a0e4c6e9121d9 100644 --- a/pkgs/development/python-modules/types-dateutil/default.nix +++ b/pkgs/development/python-modules/types-dateutil/default.nix @@ -5,13 +5,13 @@ buildPythonPackage rec { pname = "types-dateutil"; - version = "2.8.19.9"; + version = "2.8.19.20240106"; format = "setuptools"; src = fetchPypi { pname = "types-python-dateutil"; inherit version; - hash = "sha256-Y3cW+zr73H62g/ZBFx+HSTevExSc1Faoxj6PgRJ6Oe0="; + hash = "sha256-H42yIcO5jmygLqg6WDcbIsN09Crlu98YbbnJp2WBRZ8="; }; pythonImportsCheck = [ diff --git a/pkgs/development/python-modules/types-docutils/default.nix b/pkgs/development/python-modules/types-docutils/default.nix index 5962e00839102..13cd4f61f93cc 100644 --- a/pkgs/development/python-modules/types-docutils/default.nix +++ b/pkgs/development/python-modules/types-docutils/default.nix @@ -6,12 +6,12 @@ buildPythonPackage rec { pname = "types-docutils"; - version = "0.20.0.20240106"; + version = "0.20.0.20240201"; pyproject = true; src = fetchPypi { inherit pname version; - hash = "sha256-A5kuyXb74IDbWI4eVqg8Xkq6XHMwIrJbsmy4Q5e5YEk="; + hash = "sha256-ukv9T/bdGWQLp6tdk5ADk6ZYl4gPNlCZeWSpQ/Tnmms="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/types-markdown/default.nix b/pkgs/development/python-modules/types-markdown/default.nix index 8b65e9c059457..e0b1301062a65 100644 --- a/pkgs/development/python-modules/types-markdown/default.nix +++ b/pkgs/development/python-modules/types-markdown/default.nix @@ -6,13 +6,13 @@ buildPythonPackage rec { pname = "types-markdown"; - version = "3.5.0.20240106"; + version = "3.5.0.20240129"; pyproject = true; src = fetchPypi { pname = "types-Markdown"; inherit version; - hash = "sha256-vkfTXL5h1Fi9F67BJ/HaIzzW7Zb6mhMccQN4pOiFcDA="; + hash = "sha256-ms02/vJk2e1aljRcRffYDw2WcFnpIhOZizBG+7ZPZ/w="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/types-protobuf/default.nix b/pkgs/development/python-modules/types-protobuf/default.nix index 841edf89f4c64..362681861f59f 100644 --- a/pkgs/development/python-modules/types-protobuf/default.nix +++ b/pkgs/development/python-modules/types-protobuf/default.nix @@ -6,12 +6,12 @@ buildPythonPackage rec { pname = "types-protobuf"; - version = "4.24.0.20240106"; + version = "4.24.0.20240129"; format = "setuptools"; src = fetchPypi { inherit pname version; - hash = "sha256-Ak8DTzteK7K7/1XrxNWR7Q0igNkPrO7csUi55xSj8+4="; + hash = "sha256-ioPdO5t2oz4I2GNsXaohKs4TlkGO2Rg3Y1/NVkpiSJE="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/types-psycopg2/default.nix b/pkgs/development/python-modules/types-psycopg2/default.nix index 4050efead48db..c22fec8de7ddc 100644 --- a/pkgs/development/python-modules/types-psycopg2/default.nix +++ b/pkgs/development/python-modules/types-psycopg2/default.nix @@ -6,12 +6,12 @@ buildPythonPackage rec { pname = "types-psycopg2"; - version = "2.9.21.20"; + version = "2.9.21.20240201"; pyproject = true; src = fetchPypi { inherit pname version; - hash = "sha256-c7rqaJV1v1uxuRW3g/sFJARMYkKSiu7xrlqeMvB4DT0="; + hash = "sha256-daknNfYro2OXQJrkdY8CQcvEqbsw8fldO0pmD+p+dxE="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/types-pyopenssl/default.nix b/pkgs/development/python-modules/types-pyopenssl/default.nix index 3af4ba92b01a2..7a0a600492967 100644 --- a/pkgs/development/python-modules/types-pyopenssl/default.nix +++ b/pkgs/development/python-modules/types-pyopenssl/default.nix @@ -6,13 +6,13 @@ buildPythonPackage rec { pname = "types-pyopenssl"; - version = "23.3.0.20240106"; + version = "24.0.0.20240130"; format = "setuptools"; src = fetchPypi { pname = "types-pyOpenSSL"; inherit version; - hash = "sha256-PW80Yr7AwmDKrfk/uzdyJcEmZht3nH2auZttrVyhDbk="; + hash = "sha256-yBLlwcNSSfde9ZNXCLKpl9Yqv5dFviIuX5S5WVRyqyU="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/types-requests/default.nix b/pkgs/development/python-modules/types-requests/default.nix index 74ebca264a619..25538aa7c897e 100644 --- a/pkgs/development/python-modules/types-requests/default.nix +++ b/pkgs/development/python-modules/types-requests/default.nix @@ -8,12 +8,12 @@ buildPythonPackage rec { pname = "types-requests"; - version = "2.31.0.20240106"; + version = "2.31.0.20240125"; pyproject = true; src = fetchPypi { inherit pname version; - hash = "sha256-DhxzHBfzNhjsWOAithShouzCX33IaACzbvNBOAQCxhI="; + hash = "sha256-A6KM4dfNVBmRSOBDsgec3e0i1nldGaLCpnkaSyteLrU="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/types-setuptools/default.nix b/pkgs/development/python-modules/types-setuptools/default.nix index d98aea408b941..0b7e0d91b2a67 100644 --- a/pkgs/development/python-modules/types-setuptools/default.nix +++ b/pkgs/development/python-modules/types-setuptools/default.nix @@ -6,12 +6,12 @@ buildPythonPackage rec { pname = "types-setuptools"; - version = "68.2.0.2"; + version = "69.0.0.20240115"; pyproject = true; src = fetchPypi { inherit pname version; - hash = "sha256-Ce/DgK1cf3jjC8oVRvcGRpVozyYITPq3Ps+D3qHShEY="; + hash = "sha256-GpyGOJn0DL4gU9DNHQDd7wMwtJIzVGfQGPc8H+yUYqM="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/typeshed-client/default.nix b/pkgs/development/python-modules/typeshed-client/default.nix new file mode 100644 index 0000000000000..03877756e5721 --- /dev/null +++ b/pkgs/development/python-modules/typeshed-client/default.nix @@ -0,0 +1,51 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, importlib-resources +, pytestCheckHook +, pythonOlder +, setuptools +}: + +buildPythonPackage rec { + pname = "typeshed-client"; + version = "2.4.0"; + pyproject = true; + + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "JelleZijlstra"; + repo = "typeshed_client"; + rev = "refs/tags/v${version}"; + hash = "sha256-g3FECKebKeM3JPWem6+Y9T27PcAxVxj1SiBd5siLSJ4="; + }; + + nativeBuildInputs = [ + setuptools + ]; + + propagatedBuildInputs = [ + importlib-resources + ]; + + nativeCheckInputs = [ + pytestCheckHook + ]; + + pythonImportsCheck = [ + "typeshed_client" + ]; + + pytestFlagsArray = [ + "tests/test.py" + ]; + + meta = with lib; { + description = "Retrieve information from typeshed and other typing stubs"; + homepage = "https://github.com/JelleZijlstra/typeshed_client"; + changelog = "https://github.com/JelleZijlstra/typeshed_client/releases/tag/v${version}"; + license = licenses.mit; + maintainers = with maintainers; [ ]; + }; +} diff --git a/pkgs/development/python-modules/uamqp/default.nix b/pkgs/development/python-modules/uamqp/default.nix index 2e69e4568f829..68c72fe80fed7 100644 --- a/pkgs/development/python-modules/uamqp/default.nix +++ b/pkgs/development/python-modules/uamqp/default.nix @@ -16,14 +16,14 @@ buildPythonPackage rec { pname = "uamqp"; - version = "1.6.5"; + version = "1.6.8"; format = "setuptools"; src = fetchFromGitHub { owner = "Azure"; repo = "azure-uamqp-python"; rev = "refs/tags/v${version}"; - hash = "sha256-q8FxM4PBXLD5q68nrUJ+TGkui1yQJ3HHNF7jn+e+HkA="; + hash = "sha256-L4E7nnsVZ/VrOM0t4KtztU9ALmtGfi1vDzUi0ogtZOc="; }; patches = lib.optionals (stdenv.isDarwin && stdenv.isx86_64) [ diff --git a/pkgs/development/python-modules/ufo2ft/default.nix b/pkgs/development/python-modules/ufo2ft/default.nix index f0d5177328056..6daa54a31e816 100644 --- a/pkgs/development/python-modules/ufo2ft/default.nix +++ b/pkgs/development/python-modules/ufo2ft/default.nix @@ -1,28 +1,25 @@ { lib -, buildPythonPackage -, fetchPypi - -# build -, setuptools-scm - -# runtime , booleanoperations +, buildPythonPackage , cffsubr , compreffor , cu2qu , defcon +, fetchPypi , fonttools +, pytestCheckHook +, pythonOlder +, setuptools-scm , skia-pathops , ufolib2 - -# tests -, pytestCheckHook }: buildPythonPackage rec { pname = "ufo2ft"; version = "2.33.4"; - format = "setuptools"; + pyproject = true; + + disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; @@ -50,19 +47,27 @@ buildPythonPackage rec { pytestCheckHook ]; - pytestFlagsArray = [ + disabledTests = [ # Do not depend on skia. - "--deselect=tests/integration_test.py::IntegrationTest::test_removeOverlaps_CFF_pathops" - "--deselect=tests/integration_test.py::IntegrationTest::test_removeOverlaps_pathops" - "--deselect=tests/preProcessor_test.py::TTFPreProcessorTest::test_custom_filters_as_argument" - "--deselect=tests/preProcessor_test.py::TTFInterpolatablePreProcessorTest::test_custom_filters_as_argument" + "test_removeOverlaps_CFF_pathops" + "test_removeOverlaps_pathops" + "test_custom_filters_as_argument" + "test_custom_filters_as_argument" + # Some integration tests fail + "test_compileVariableCFF2" + "test_compileVariableTTF" + "test_drop_glyph_names_variable" + "test_drop_glyph_names_variable" ]; - pythonImportsCheck = [ "ufo2ft" ]; + pythonImportsCheck = [ + "ufo2ft" + ]; meta = with lib; { description = "Bridge from UFOs to FontTools objects"; homepage = "https://github.com/googlefonts/ufo2ft"; + changelog = "https://github.com/googlefonts/ufo2ft/releases/tag/v${version}"; license = licenses.mit; maintainers = with maintainers; [ ]; }; diff --git a/pkgs/development/python-modules/unearth/default.nix b/pkgs/development/python-modules/unearth/default.nix index 7af5740fe3154..649e305aeeb37 100644 --- a/pkgs/development/python-modules/unearth/default.nix +++ b/pkgs/development/python-modules/unearth/default.nix @@ -15,14 +15,14 @@ buildPythonPackage rec { pname = "unearth"; - version = "0.12.1"; + version = "0.14.0"; format = "pyproject"; - disabled = pythonOlder "3.7"; + disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; - hash = "sha256-TKrZQbYPUeUP3BCYZiNNQHkQrvd/EjOqG2tdFox0J+4="; + hash = "sha256-883fuUrA+GX7z5ZCMVVu9xgwEDecALASBVF6UMeKGG0="; }; nativeBuildInputs = [ @@ -32,8 +32,6 @@ buildPythonPackage rec { propagatedBuildInputs = [ packaging requests - ] ++ lib.optionals (pythonOlder "3.8") [ - cached-property ]; __darwinAllowLocalNetworking = true; diff --git a/pkgs/development/python-modules/unify/default.nix b/pkgs/development/python-modules/unify/default.nix index 58bee2b6e52e5..fc0cd0d4f67e6 100644 --- a/pkgs/development/python-modules/unify/default.nix +++ b/pkgs/development/python-modules/unify/default.nix @@ -1,26 +1,47 @@ { lib , buildPythonPackage , fetchFromGitHub +, pythonOlder +, setuptools +, pytestCheckHook , untokenize -, unittestCheckHook }: buildPythonPackage rec { pname = "unify"; version = "0.5"; - format = "setuptools"; + pyproject = true; + + disabled = pythonOlder "3.9"; - # PyPi release is missing tests (see https://github.com/myint/unify/pull/18) src = fetchFromGitHub { owner = "myint"; repo = "unify"; - rev = "v${version}"; - sha256 = "1l6xxygaigacsxf0g5f7w5gpqha1ava6mcns81kqqy6vw91pyrbi"; + rev = "refs/tags/v${version}"; + hash = "sha256-cWV/Q+LbeIxnQNqyatRWQUF8X+HHlQdc10y9qJ7v3dA="; }; - propagatedBuildInputs = [ untokenize ]; + nativeBuildInputs = [ + setuptools + ]; + + propagatedBuildInputs = [ + untokenize + ]; + + nativeCheckInputs = [ + pytestCheckHook + ]; + + pythonImportsCheck = [ + "unify" + ]; - nativeCheckInputs = [ unittestCheckHook ]; + disabledTests = [ + # https://github.com/myint/unify/issues/21 + "test_format_code" + "test_format_code_with_backslash_in_comment" + ]; meta = with lib; { description = "Modifies strings to all use the same quote where possible"; diff --git a/pkgs/development/python-modules/unique-log-filter/default.nix b/pkgs/development/python-modules/unique-log-filter/default.nix new file mode 100644 index 0000000000000..07b2a9a305e07 --- /dev/null +++ b/pkgs/development/python-modules/unique-log-filter/default.nix @@ -0,0 +1,42 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, flit-core +, pytestCheckHook +, pythonOlder +}: + +buildPythonPackage rec { + pname = "unique-log-filter"; + version = "0.1.0"; + pyproject = true; + + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "twizmwazin"; + repo = "unique_log_filter"; + rev = "refs/tags/v${version}"; + hash = "sha256-av1pVPDsO2dto5fhBK74jKfVsVY2ChyUE5NNja2B1Qw="; + }; + + nativeBuildInputs = [ + flit-core + ]; + + nativeCheckInputs = [ + pytestCheckHook + ]; + + pythonImportsCheck = [ + "unique_log_filter" + ]; + + meta = with lib; { + description = "A log filter that removes duplicate log messages"; + homepage = "https://github.com/twizmwazin/unique_log_filter"; + changelog = "https://github.com/twizmwazin/unique_log_filter/releases/tag/v${version}"; + license = licenses.bsd2; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/uproot/default.nix b/pkgs/development/python-modules/uproot/default.nix index 79c925c012a59..288758dfb34aa 100644 --- a/pkgs/development/python-modules/uproot/default.nix +++ b/pkgs/development/python-modules/uproot/default.nix @@ -3,10 +3,12 @@ , fetchFromGitHub , pythonOlder , awkward +, hatch-vcs , hatchling , numpy , fsspec , packaging +, pandas , pytestCheckHook , lz4 , pytest-timeout @@ -18,7 +20,7 @@ buildPythonPackage rec { pname = "uproot"; - version = "5.2.1"; + version = "5.2.2"; pyproject = true; disabled = pythonOlder "3.8"; @@ -27,10 +29,11 @@ buildPythonPackage rec { owner = "scikit-hep"; repo = "uproot5"; rev = "refs/tags/v${version}"; - hash = "sha256-3BGGtA99MoagFtGcCeGiDyvzqixf+lbEu9Dn/62RQto="; + hash = "sha256-7X8oIMvOSC1JXQrZTPXLiqsUnfSc2Rx3KCvxKbhvPzM="; }; nativeBuildInputs = [ + hatch-vcs hatchling ]; @@ -42,6 +45,7 @@ buildPythonPackage rec { ]; nativeCheckInputs = [ + pandas pytestCheckHook lz4 pytest-timeout diff --git a/pkgs/development/python-modules/urwid/default.nix b/pkgs/development/python-modules/urwid/default.nix index 66a8d830cc2da..cf42463c19b28 100644 --- a/pkgs/development/python-modules/urwid/default.nix +++ b/pkgs/development/python-modules/urwid/default.nix @@ -1,26 +1,32 @@ { lib , buildPythonPackage +, exceptiongroup , fetchFromGitHub - -# build-system -, setuptools -, setuptools-scm - -# tests , glibcLocales +, pygobject3 +, pyserial , pytestCheckHook +, pythonOlder +, pyzmq +, setuptools +, setuptools-scm +, tornado +, trio +, twisted }: buildPythonPackage rec { pname = "urwid"; - version = "2.2.3"; - format = "pyproject"; + version = "2.4.3"; + pyproject = true; + + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "urwid"; repo = "urwid"; rev = "refs/tags/${version}"; - hash = "sha256-oPb2h/+gaqkZTXIiESjExMfBNnOzDvoMkXvkZ/+KVwo="; + hash = "sha256-raDsUZaXBC4s/48KNH8Thrpm8Bq8wj9+Rahk+LkxcDo="; }; postPatch = '' @@ -32,10 +38,35 @@ buildPythonPackage rec { setuptools-scm ]; + passthru.optional-dependencies = { + glib = [ + pygobject3 + ]; + tornado = [ + tornado + ]; + trio = [ + exceptiongroup + trio + ]; + twisted = [ + twisted + ]; + zmq = [ + pyzmq + ]; + serial = [ + pyserial + ]; + lcd = [ + pyserial + ]; + }; + nativeCheckInputs = [ glibcLocales pytestCheckHook - ]; + ] ++ lib.flatten (builtins.attrValues passthru.optional-dependencies); env.LC_ALL = "en_US.UTF8"; @@ -53,8 +84,8 @@ buildPythonPackage rec { ]; meta = with lib; { - changelog = "https://github.com/urwid/urwid/releases/tag/${version}"; description = "A full-featured console (xterm et al.) user interface library"; + changelog = "https://github.com/urwid/urwid/releases/tag/${version}"; downloadPage = "https://github.com/urwid/urwid"; homepage = "https://urwid.org/"; license = licenses.lgpl21Plus; diff --git a/pkgs/development/python-modules/vallox-websocket-api/default.nix b/pkgs/development/python-modules/vallox-websocket-api/default.nix index fb3197b6b9e57..2d82aa97c5073 100644 --- a/pkgs/development/python-modules/vallox-websocket-api/default.nix +++ b/pkgs/development/python-modules/vallox-websocket-api/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "vallox-websocket-api"; - version = "4.0.2"; + version = "4.0.3"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -22,7 +22,7 @@ buildPythonPackage rec { owner = "yozik04"; repo = "vallox_websocket_api"; rev = "refs/tags/${version}"; - hash = "sha256-a9cYYRAKX9sY9fQhefLWgyvk0vQl7Ao3zvw0SAtFW/Q="; + hash = "sha256-L6uLA8iVYzh3wFVSwxzleHhu22sQeomq9N9A1oAxpf4="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/vncdo/default.nix b/pkgs/development/python-modules/vncdo/default.nix index 51b5abbe9ea20..2fbee9f2d65a6 100644 --- a/pkgs/development/python-modules/vncdo/default.nix +++ b/pkgs/development/python-modules/vncdo/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "vncdo"; - version = "1.1.0"; + version = "1.2.0"; pyproject = true; disabled = pythonOlder "3.7"; @@ -22,7 +22,7 @@ buildPythonPackage rec { owner = "sibson"; repo = "vncdotool"; rev = "refs/tags/v${version}"; - hash = "sha256-m8msWa8uUuDEjEUlXHCgYi0HFPKXLVXpXLyuQ3quNbA="; + hash = "sha256-QrD6z/g85FwaZCJ1PRn8CBKCOQcbVjQ9g0NpPIxguqk="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/vtjp/default.nix b/pkgs/development/python-modules/vtjp/default.nix new file mode 100644 index 0000000000000..4e193ea2eb482 --- /dev/null +++ b/pkgs/development/python-modules/vtjp/default.nix @@ -0,0 +1,47 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, pythonOlder +, requests +, setuptools +, tabulate +}: + +buildPythonPackage rec { + pname = "vtjp"; + version = "0.2.1"; + pyproject = true; + + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "Miicroo"; + repo = "python-vasttrafik"; + rev = "refs/tags/v${version}"; + hash = "sha256-3/toHY2PkG87J5bIMNJZHF/4mUvWaeHamMzPa1St7Xo="; + }; + + nativeBuildInputs = [ + setuptools + ]; + + propagatedBuildInputs = [ + requests + tabulate + ]; + + # Module has no tests + doCheck = false; + + pythonImportsCheck = [ + "vasttrafik" + ]; + + meta = with lib; { + description = "A Python wrapper and cli for Västtrafik public API"; + homepage = "https://github.com/Miicroo/python-vasttrafik"; + changelog = "https://github.com/Miicroo/python-vasttrafik/releases/tag/v${version}"; + license = licenses.mit; + maintainers = with maintainers; [ ]; + }; +} diff --git a/pkgs/development/python-modules/vulture/default.nix b/pkgs/development/python-modules/vulture/default.nix index 5578b54ccd28a..43d6f8b00fcd3 100644 --- a/pkgs/development/python-modules/vulture/default.nix +++ b/pkgs/development/python-modules/vulture/default.nix @@ -11,14 +11,14 @@ buildPythonPackage rec { pname = "vulture"; - version = "2.10"; + version = "2.11"; pyproject = true; disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; - hash = "sha256-KlwxYL/7p3WVtubfzEEgFr0qCc1LZs33+7qRNoSJn28="; + hash = "sha256-8Pu2C85lEarYfuBzbFAkVnN0kKgtkZpE5tkiYss18cI="; }; postPatch = '' diff --git a/pkgs/development/python-modules/wagtail/default.nix b/pkgs/development/python-modules/wagtail/default.nix index f2f924b5c1243..0e7bf3a3f1858 100644 --- a/pkgs/development/python-modules/wagtail/default.nix +++ b/pkgs/development/python-modules/wagtail/default.nix @@ -37,7 +37,9 @@ buildPythonPackage rec { postPatch = '' substituteInPlace setup.py \ --replace "beautifulsoup4>=4.8,<4.12" "beautifulsoup4>=4.8" \ - --replace "draftjs_exporter>=2.1.5,<3.0" "draftjs_exporter>=2.1.5,<6.0" + --replace "draftjs_exporter>=2.1.5,<3.0" "draftjs_exporter>=2.1.5,<6.0" \ + --replace "django-taggit>=2.0,<5.0" "django-taggit>=2.0,<6.0" \ + --replace "Willow[heif]>=1.6.2,<1.7" "Willow[heif]>=1.6.2,<2" ''; propagatedBuildInputs = [ @@ -64,7 +66,9 @@ buildPythonPackage rec { # on wagtail (wagtail-factories) doCheck = false; - passthru.tests.wagtail = callPackage ./tests.nix {}; + passthru.tests.wagtail = callPackage ./tests.nix { }; + + pythonImportsCheck = [ "wagtail" ]; meta = with lib; { description = "A Django content management system focused on flexibility and user experience"; diff --git a/pkgs/development/python-modules/wandb/default.nix b/pkgs/development/python-modules/wandb/default.nix index c0720c4757a54..654d63981a654 100644 --- a/pkgs/development/python-modules/wandb/default.nix +++ b/pkgs/development/python-modules/wandb/default.nix @@ -18,12 +18,14 @@ , google-cloud-compute , google-cloud-storage , hypothesis +, imageio , jsonref , jsonschema , keras , kubernetes , matplotlib , mlflow +, moviepy , nbclient , nbformat , pandas @@ -45,6 +47,7 @@ , sentry-sdk , setproctitle , setuptools +, soundfile , substituteAll , torch , tqdm @@ -107,12 +110,14 @@ buildPythonPackage rec { google-cloud-compute google-cloud-storage hypothesis + imageio jsonref jsonschema keras kubernetes matplotlib mlflow + moviepy nbclient nbformat pandas @@ -124,6 +129,7 @@ buildPythonPackage rec { pytestCheckHook responses scikit-learn + soundfile torch tqdm ]; @@ -150,8 +156,6 @@ buildPythonPackage rec { "tests/pytest_tests/unit_tests_old/test_file_upload.py" "tests/pytest_tests/unit_tests_old/test_footer.py" "tests/pytest_tests/unit_tests_old/test_internal_api.py" - "tests/pytest_tests/unit_tests_old/test_keras.py" - "tests/pytest_tests/unit_tests_old/test_logging.py" "tests/pytest_tests/unit_tests_old/test_metric_internal.py" "tests/pytest_tests/unit_tests_old/test_public_api.py" "tests/pytest_tests/unit_tests_old/test_runtime.py" @@ -160,7 +164,6 @@ buildPythonPackage rec { "tests/pytest_tests/unit_tests_old/test_tb_watcher.py" "tests/pytest_tests/unit_tests_old/test_time_resolution.py" "tests/pytest_tests/unit_tests_old/test_wandb_agent.py" - "tests/pytest_tests/unit_tests_old/test_wandb_artifacts.py" "tests/pytest_tests/unit_tests_old/test_wandb_integration.py" "tests/pytest_tests/unit_tests_old/test_wandb_run.py" "tests/pytest_tests/unit_tests_old/test_wandb.py" @@ -181,6 +184,9 @@ buildPythonPackage rec { # Requires docker access "tests/pytest_tests/system_tests/test_artifacts/test_artifact_saver.py" + "tests/pytest_tests/system_tests/test_artifacts/test_misc.py" + "tests/pytest_tests/system_tests/test_artifacts/test_misc2.py" + "tests/pytest_tests/system_tests/test_artifacts/test_object_references.py" "tests/pytest_tests/system_tests/test_artifacts/test_wandb_artifacts_full.py" "tests/pytest_tests/system_tests/test_artifacts/test_wandb_artifacts.py" "tests/pytest_tests/system_tests/test_core/test_cli_full.py" @@ -198,7 +204,6 @@ buildPythonPackage rec { "tests/pytest_tests/system_tests/test_core/test_public_api.py" "tests/pytest_tests/system_tests/test_core/test_redir_full.py" "tests/pytest_tests/system_tests/test_core/test_report_api.py" - "tests/pytest_tests/system_tests/test_core/test_runtime.py" "tests/pytest_tests/system_tests/test_core/test_save_policies.py" "tests/pytest_tests/system_tests/test_core/test_sender.py" "tests/pytest_tests/system_tests/test_core/test_start_method.py" @@ -216,15 +221,8 @@ buildPythonPackage rec { "tests/pytest_tests/system_tests/test_core/test_wandb_verify.py" "tests/pytest_tests/system_tests/test_core/test_wandb.py" "tests/pytest_tests/system_tests/test_importers/test_import_mlflow.py" - "tests/pytest_tests/system_tests/test_nexus/test_nexus.py" - "tests/pytest_tests/system_tests/test_sweep/test_public_api.py" - "tests/pytest_tests/system_tests/test_sweep/test_sweep_scheduler.py" - "tests/pytest_tests/system_tests/test_sweep/test_sweep_utils.py" - "tests/pytest_tests/system_tests/test_sweep/test_wandb_agent_full.py" - "tests/pytest_tests/system_tests/test_sweep/test_wandb_agent.py" - "tests/pytest_tests/system_tests/test_sweep/test_wandb_sweep.py" - "tests/pytest_tests/system_tests/test_system_metrics/test_open_metrics.py" "tests/pytest_tests/system_tests/test_launch/test_github_reference.py" + "tests/pytest_tests/system_tests/test_launch/test_job_status_tracker.py" "tests/pytest_tests/system_tests/test_launch/test_job.py" "tests/pytest_tests/system_tests/test_launch/test_launch_add.py" "tests/pytest_tests/system_tests/test_launch/test_launch_cli.py" @@ -234,8 +232,18 @@ buildPythonPackage rec { "tests/pytest_tests/system_tests/test_launch/test_launch_sagemaker.py" "tests/pytest_tests/system_tests/test_launch/test_launch_sweep_cli.py" "tests/pytest_tests/system_tests/test_launch/test_launch_sweep.py" + "tests/pytest_tests/system_tests/test_launch/test_launch_vertex.py" "tests/pytest_tests/system_tests/test_launch/test_launch.py" "tests/pytest_tests/system_tests/test_launch/test_wandb_reference.py" + "tests/pytest_tests/system_tests/test_nexus/test_nexus.py" + "tests/pytest_tests/system_tests/test_sweep/test_public_api.py" + "tests/pytest_tests/system_tests/test_sweep/test_sweep_scheduler.py" + "tests/pytest_tests/system_tests/test_sweep/test_sweep_utils.py" + "tests/pytest_tests/system_tests/test_sweep/test_wandb_agent_full.py" + "tests/pytest_tests/system_tests/test_sweep/test_wandb_agent.py" + "tests/pytest_tests/system_tests/test_sweep/test_wandb_sweep.py" + "tests/pytest_tests/system_tests/test_system_metrics/test_open_metrics.py" + "tests/pytest_tests/system_tests/test_system_metrics/test_system_monitor.py" # Tries to access /homeless-shelter "tests/pytest_tests/unit_tests/test_tables.py" @@ -248,12 +256,16 @@ buildPythonPackage rec { "tests/pytest_tests/unit_tests/test_launch/test_runner/test_vertex.py" # Requires google-cloud-artifact-registry which is not packaged as of 2023-04-25. - "tests/pytest_tests/unit_tests_old/tests_launch/test_kaniko_build.py" "tests/pytest_tests/unit_tests/test_launch/test_registry/test_gcp_artifact_registry.py" # Requires kfp which is not packaged as of 2023-04-25. "tests/pytest_tests/system_tests/test_core/test_kfp.py" + # Requires kubernetes_asyncio which is not packaged as of 2024-01-14. + "tests/pytest_tests/unit_tests/test_launch/test_builder/test_kaniko.py" + "tests/pytest_tests/unit_tests/test_launch/test_runner/test_kubernetes.py" + "tests/pytest_tests/unit_tests/test_launch/test_runner/test_safe_watch.py" + # Requires metaflow which is not packaged as of 2023-04-25. "tests/pytest_tests/unit_tests/test_metaflow.py" @@ -266,6 +278,9 @@ buildPythonPackage rec { # See https://github.com/wandb/wandb/issues/5423 "tests/pytest_tests/unit_tests/test_docker.py" "tests/pytest_tests/unit_tests/test_library_public.py" + + # See https://github.com/wandb/wandb/issues/6836 + "tests/pytest_tests/unit_tests_old/test_logging.py" ] ++ lib.optionals stdenv.isLinux [ # Same as above "tests/pytest_tests/unit_tests/test_artifacts/test_storage.py" diff --git a/pkgs/development/python-modules/watermark/default.nix b/pkgs/development/python-modules/watermark/default.nix index 6e9e169ace5ee..daac4416fc088 100644 --- a/pkgs/development/python-modules/watermark/default.nix +++ b/pkgs/development/python-modules/watermark/default.nix @@ -29,7 +29,6 @@ buildPythonPackage rec { propagatedBuildInputs = [ ipython - ] ++ lib.optionals (pythonOlder "3.8") [ importlib-metadata ]; diff --git a/pkgs/development/python-modules/weaviate-client/default.nix b/pkgs/development/python-modules/weaviate-client/default.nix index e87694dfe50e1..35a4c55275334 100644 --- a/pkgs/development/python-modules/weaviate-client/default.nix +++ b/pkgs/development/python-modules/weaviate-client/default.nix @@ -10,14 +10,14 @@ buildPythonPackage rec { pname = "weaviate-client"; - version = "3.26.0"; + version = "3.26.2"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-7oCb8tH1pQDJpoxe3C6xdKtRQqNoAuJ0qySv5nX/sos="; + hash = "sha256-Y+xwg5tkkJgQpkqns+W4UIhGLpPH4u08MuvvtwLzZyM="; }; postPatch = '' diff --git a/pkgs/development/python-modules/webargs/default.nix b/pkgs/development/python-modules/webargs/default.nix index acee1e965f8da..800649a093884 100644 --- a/pkgs/development/python-modules/webargs/default.nix +++ b/pkgs/development/python-modules/webargs/default.nix @@ -4,13 +4,13 @@ buildPythonPackage rec { pname = "webargs"; - version = "8.3.0"; + version = "8.4.0"; format = "setuptools"; disabled = isPy27; src = fetchPypi { inherit pname version; - hash = "sha256-yrIHlBsGhsTQhsgjYy3c1DQxUWRDQaMvz1C46qceMcc="; + hash = "sha256-6pk2ghSkzmE5JL6Z1x21jCaWMele/0+gm3NU5S3ABqU="; }; pythonImportsCheck = [ diff --git a/pkgs/development/python-modules/webauthn/default.nix b/pkgs/development/python-modules/webauthn/default.nix index 257649a9db0fe..ad28892290ee0 100644 --- a/pkgs/development/python-modules/webauthn/default.nix +++ b/pkgs/development/python-modules/webauthn/default.nix @@ -4,29 +4,27 @@ , asn1crypto , cbor2 , pythonOlder -, pydantic , pyopenssl , pytestCheckHook }: buildPythonPackage rec { pname = "webauthn"; - version = "1.11.1"; + version = "2.0.0"; format = "setuptools"; - disabled = pythonOlder "3.7"; + disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "duo-labs"; repo = "py_webauthn"; rev = "refs/tags/v${version}"; - hash = "sha256-+pp21rtwavtjj6ahG091xsJpsYOH3zpqU3xH2/YFXqY="; + hash = "sha256-StqoSrzErV13/OUpSWbI+6N5tSFPEpvnmQcDiZMaXPI="; }; propagatedBuildInputs = [ asn1crypto cbor2 - pydantic pyopenssl ]; diff --git a/pkgs/development/python-modules/wheel-inspect/default.nix b/pkgs/development/python-modules/wheel-inspect/default.nix index c8ce155c788ff..7d79d18f443b6 100644 --- a/pkgs/development/python-modules/wheel-inspect/default.nix +++ b/pkgs/development/python-modules/wheel-inspect/default.nix @@ -8,7 +8,7 @@ , packaging , pytestCheckHook , pythonOlder -, readme_renderer +, readme-renderer , wheel-filename }: @@ -31,7 +31,7 @@ buildPythonPackage rec { entry-points-txt headerparser packaging - readme_renderer + readme-renderer wheel-filename ]; diff --git a/pkgs/development/python-modules/wheezy-captcha/default.nix b/pkgs/development/python-modules/wheezy-captcha/default.nix index 4006bedf14e1f..fc0701704d794 100644 --- a/pkgs/development/python-modules/wheezy-captcha/default.nix +++ b/pkgs/development/python-modules/wheezy-captcha/default.nix @@ -6,12 +6,12 @@ buildPythonPackage rec { pname = "wheezy.captcha"; - version = "3.0.2"; + version = "3.2.0"; format = "setuptools"; src = fetchPypi { inherit pname version; - hash = "sha256-PdtOhoVOopQsX2raPqh0P8meM8/MysgKsIe27HNtl3s="; + hash = "sha256-UtTpgrPK5eRr7sq97jptjdJyvAyrM2oU07+GZr2Ad7s="; }; propagatedBuildInputs = [ pillow ]; diff --git a/pkgs/development/python-modules/whispers/default.nix b/pkgs/development/python-modules/whispers/default.nix index bba0f14e159b4..5106ee3b05566 100644 --- a/pkgs/development/python-modules/whispers/default.nix +++ b/pkgs/development/python-modules/whispers/default.nix @@ -4,6 +4,7 @@ , buildPythonPackage , crossplane , fetchFromGitHub +, fetchpatch , jellyfish , jproperties , luhn @@ -12,22 +13,52 @@ , pytestCheckHook , pythonOlder , pyyaml +, setuptools }: buildPythonPackage rec { pname = "whispers"; version = "2.2.0"; - format = "setuptools"; + pyproject = true; disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "adeptex"; - repo = pname; + repo = "whispers"; rev = "refs/tags/${version}"; hash = "sha256-9vXku8BWJtlf+lmAcQ8a7qTisRNc+xVw0T0Eunc4lt4="; }; + patches = [ + # Support astroid > 3, https://github.com/adeptex/whispers/pull/117 + (fetchpatch { + url = "https://github.com/adeptex/whispers/commit/ff25e81cb3d775e5fb186c2d135b77c27d9ed43a.patch"; + hash = "sha256-jKm7fs04mGUD7MZYAA/3xt01e9knuLun3c3u8PlLebg="; + }) + (fetchpatch { + url = "https://github.com/adeptex/whispers/commit/ba6a56dddb12d1cb62f94dd7659ba24fdc4363ee.patch"; + hash = "sha256-eHWnXHT0lzS7BqneMqfvV3w6GfrCiTJ5i+av82J+fpk="; + }) + (fetchpatch { + url = "https://github.com/adeptex/whispers/commit/8b7b1593eb86abfc09b3581d463fc7d0e06309dc.patch"; + hash = "sha256-JcRdv5eIyXKWaVqbJZlYqiSieE4z0MKF4dvO/hRBBMs="; + }) + (fetchpatch { + url = "https://github.com/adeptex/whispers/commit/71dcb614e4d9e0247afc50cd4214659739f8844e.patch"; + hash = "sha256-7XIFuc8Rf2ValN3BoAJOjSqjgmiOauxCFonMgGljFg0="; + }) + ]; + + postPatch = '' + substituteInPlace setup.py \ + --replace '"pytest-runner"' "" + ''; + + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ astroid beautifulsoup4 @@ -44,11 +75,6 @@ buildPythonPackage rec { pytestCheckHook ]; - postPatch = '' - substituteInPlace setup.py \ - --replace '"pytest-runner"' "" - ''; - preCheck = '' # Some tests need the binary available in PATH export PATH=$out/bin:$PATH @@ -60,7 +86,8 @@ buildPythonPackage rec { meta = with lib; { description = "Tool to identify hardcoded secrets in static structured text"; - homepage = "https://github.com/Skyscanner/whispers"; + homepage = "https://github.com/adeptex/whispers"; + changelog = "https://github.com/adeptex/whispers/releases/tag/${version}"; license = with licenses; [ asl20 ]; maintainers = with maintainers; [ fab ]; }; diff --git a/pkgs/development/python-modules/willow/default.nix b/pkgs/development/python-modules/willow/default.nix index 7f5b06223ee69..2b0058357d88d 100644 --- a/pkgs/development/python-modules/willow/default.nix +++ b/pkgs/development/python-modules/willow/default.nix @@ -23,7 +23,7 @@ buildPythonPackage rec { pname = "willow"; - version = "1.7.0"; + version = "1.8.0"; format = "pyproject"; disabled = pythonOlder "2.7"; @@ -32,7 +32,7 @@ buildPythonPackage rec { owner = "wagtail"; repo = "Willow"; rev = "refs/tags/v${version}"; - hash = "sha256-+ubylc/Zuw3DSSgtTg2dO3Zj0gpTJcLbb1J++caxS7w="; + hash = "sha256-g9/v56mdo0sJe5Pl/to/R/kXayaKK3qaYbnnPXpFjXE="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/withings-sync/default.nix b/pkgs/development/python-modules/withings-sync/default.nix index 3f20703baaf33..bf6c2153c7e03 100644 --- a/pkgs/development/python-modules/withings-sync/default.nix +++ b/pkgs/development/python-modules/withings-sync/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "withings-sync"; - version = "4.2.2"; + version = "4.2.4"; pyproject = true; disabled = pythonOlder "3.10"; @@ -19,8 +19,8 @@ buildPythonPackage rec { src = fetchFromGitHub { owner = "jaroslawhartman"; repo = "withings-sync"; - rev = "refs/tags/v${version}"; - hash = "sha256-p1coGTbMQ+zptFKVLW5qgSdoudo2AggGT8Xu+cSCCs4="; + rev = "refs/tags/v.${version}"; + hash = "sha256-nFYEtQob3x6APWDKCVP5p+qkKmgvXIcmegp/6ZRbDQA="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/wled/default.nix b/pkgs/development/python-modules/wled/default.nix index c1a5f51956d13..7d90c554907ca 100644 --- a/pkgs/development/python-modules/wled/default.nix +++ b/pkgs/development/python-modules/wled/default.nix @@ -9,6 +9,7 @@ , yarl , aresponses , pytest-asyncio +, pytest-xdist , pytestCheckHook , pythonOlder }: @@ -49,6 +50,7 @@ buildPythonPackage rec { nativeCheckInputs = [ aresponses pytest-asyncio + pytest-xdist pytestCheckHook ]; diff --git a/pkgs/development/python-modules/xarray-einstats/default.nix b/pkgs/development/python-modules/xarray-einstats/default.nix index 78f7c101fd3f6..bcc29200f5e2c 100644 --- a/pkgs/development/python-modules/xarray-einstats/default.nix +++ b/pkgs/development/python-modules/xarray-einstats/default.nix @@ -14,7 +14,7 @@ buildPythonPackage rec { pname = "xarray-einstats"; - version = "0.6.0"; + version = "0.7.0"; format = "pyproject"; disabled = pythonOlder "3.9"; @@ -23,7 +23,7 @@ buildPythonPackage rec { owner = "arviz-devs"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-TXuNqXsny7VpJqV5/3riKzXLheZl+qF+zf4SCMipzmw="; + hash = "sha256-aljjwgBJp341aQN3g1PoZPj+46x21Eu+svG1yzURhJE="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/xdoctest/default.nix b/pkgs/development/python-modules/xdoctest/default.nix index 357e605d85349..68eb1a0f426bb 100644 --- a/pkgs/development/python-modules/xdoctest/default.nix +++ b/pkgs/development/python-modules/xdoctest/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "xdoctest"; - version = "1.1.2"; + version = "1.1.3"; pyproject = true; disabled = pythonOlder "3.6"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "Erotemic"; repo = "xdoctest"; rev = "refs/tags/v${version}"; - hash = "sha256-yTu5ldr9TkpYRP8hjgUPpexBVLjaK2gfPvISjMJLY74="; + hash = "sha256-MOjT8adJoSxigSG2Gy5gqRfYswjUsgbBOV1ZU0LBDN8="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/xformers/0001-fix-allow-building-without-git.patch b/pkgs/development/python-modules/xformers/0001-fix-allow-building-without-git.patch new file mode 100644 index 0000000000000..54b79e3e2f699 --- /dev/null +++ b/pkgs/development/python-modules/xformers/0001-fix-allow-building-without-git.patch @@ -0,0 +1,25 @@ +From 4c2b65c47d328c2f20cc74adcec2286fee6cb5de Mon Sep 17 00:00:00 2001 +From: Yaroslav Bolyukin <iam@lach.pw> +Date: Tue, 30 Jan 2024 18:18:35 +0100 +Subject: [PATCH] fix: allow building without git + +--- + setup.py | 2 +- + 1 file changed, 1 insertion(+), 1 deletion(-) + +diff --git a/setup.py b/setup.py +index e01c008..92eca62 100644 +--- a/setup.py ++++ b/setup.py +@@ -71,7 +71,7 @@ def get_flash_version() -> str: + ["git", "describe", "--tags", "--always"], + cwd=flash_dir, + ).decode("ascii")[:-1] +- except subprocess.CalledProcessError: ++ except Exception: + version = flash_dir / "version.txt" + if version.is_file(): + return version.read_text().strip() +-- +2.43.0 + diff --git a/pkgs/development/python-modules/xformers/default.nix b/pkgs/development/python-modules/xformers/default.nix index 164513da94c87..c909559ca59a7 100644 --- a/pkgs/development/python-modules/xformers/default.nix +++ b/pkgs/development/python-modules/xformers/default.nix @@ -25,7 +25,8 @@ #, flash-attn }: let - version = "0.03"; + inherit (torch) cudaCapabilities cudaPackages cudaSupport; + version = "0.0.23.post1"; in buildPythonPackage { pname = "xformers"; @@ -38,17 +39,34 @@ buildPythonPackage { owner = "facebookresearch"; repo = "xformers"; rev = "refs/tags/v${version}"; - hash = "sha256-G8f7tny5B8SAQ6+2uOjhY7nD0uOT4sskIwtTdwivQXo="; + hash = "sha256-AJXow8MmX4GxtEE2jJJ/ZIBr+3i+uS4cA6vofb390rY="; fetchSubmodules = true; }; + patches = [ + ./0001-fix-allow-building-without-git.patch + ]; + preBuild = '' cat << EOF > ./xformers/version.py # noqa: C801 __version__ = "${version}" EOF + '' + lib.optionalString cudaSupport '' + export CUDA_HOME=${cudaPackages.cuda_nvcc} + export TORCH_CUDA_ARCH_LIST="${lib.concatStringsSep ";" cudaCapabilities}" ''; + buildInputs = lib.optionals cudaSupport (with cudaPackages; [ + # flash-attn build + cuda_cudart # cuda_runtime_api.h + libcusparse.dev # cusparse.h + cuda_cccl.dev # nv/target + libcublas.dev # cublas_v2.h + libcusolver.dev # cusolverDn.h + libcurand.dev # curand_kernel.h + ]); + nativeBuildInputs = [ which ]; diff --git a/pkgs/development/python-modules/xiaomi-ble/default.nix b/pkgs/development/python-modules/xiaomi-ble/default.nix index 985acfef67580..6e2ac49cc348c 100644 --- a/pkgs/development/python-modules/xiaomi-ble/default.nix +++ b/pkgs/development/python-modules/xiaomi-ble/default.nix @@ -11,12 +11,13 @@ , pycryptodomex , pytestCheckHook , pythonOlder +, pythonRelaxDepsHook , sensor-state-data }: buildPythonPackage rec { pname = "xiaomi-ble"; - version = "0.21.2"; + version = "0.25.2"; format = "pyproject"; disabled = pythonOlder "3.9"; @@ -25,17 +26,21 @@ buildPythonPackage rec { owner = "Bluetooth-Devices"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-x9FQk3oGSxFrFj/F+QU9n7UMRTn0N4HsGonuNEEe9ug="; + hash = "sha256-awztZiUgEMGR8m/aXhDBLdm4IXIKIAHgX922m+PTTfg="; }; postPatch = '' substituteInPlace pyproject.toml \ - --replace " --cov=xiaomi_ble --cov-report=term-missing:skip-covered" "" \ - --replace 'pycryptodomex = ">=3.18.0"' 'pycryptodomex = ">=3.17.0"' + --replace " --cov=xiaomi_ble --cov-report=term-missing:skip-covered" "" ''; nativeBuildInputs = [ poetry-core + pythonRelaxDepsHook + ]; + + pythonRelaxDeps = [ + "pycryptodomex" ]; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/xstatic/default.nix b/pkgs/development/python-modules/xstatic/default.nix index 39e5f233ccd2d..d9d6e03983552 100644 --- a/pkgs/development/python-modules/xstatic/default.nix +++ b/pkgs/development/python-modules/xstatic/default.nix @@ -5,11 +5,11 @@ buildPythonPackage rec { pname = "XStatic"; - version = "1.0.2"; + version = "1.0.3"; src = fetchPypi { inherit version pname; - sha256 = "80b78dfe37bce6dee4343d64c65375a80bcf399b46dd47c0c7d56161568a23a8"; + sha256 = "sha256-QCVEzJ4XlIlEEFTwnIB4BOEV6iRpB96HwDVftPWjEmg="; }; # no tests implemented diff --git a/pkgs/development/python-modules/yalexs-ble/default.nix b/pkgs/development/python-modules/yalexs-ble/default.nix index 18f4fbfead6b0..b32403a6a97d7 100644 --- a/pkgs/development/python-modules/yalexs-ble/default.nix +++ b/pkgs/development/python-modules/yalexs-ble/default.nix @@ -15,7 +15,7 @@ buildPythonPackage rec { pname = "yalexs-ble"; - version = "2.4.0"; + version = "2.4.1"; format = "pyproject"; disabled = pythonOlder "3.9"; @@ -24,7 +24,7 @@ buildPythonPackage rec { owner = "bdraco"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-kdEeLd+83Pdno1ZzirZUrRk/7q0WFc/XfqvuKvVQ8/s="; + hash = "sha256-u6Mhqt6DcPiini8EvtqKoVAYUwb31hvWfCNb/sbqvWQ="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/yalexs/default.nix b/pkgs/development/python-modules/yalexs/default.nix index 19d40b4f8051a..7f7c86af09cb2 100644 --- a/pkgs/development/python-modules/yalexs/default.nix +++ b/pkgs/development/python-modules/yalexs/default.nix @@ -17,7 +17,7 @@ buildPythonPackage rec { pname = "yalexs"; - version = "1.10.0"; + version = "1.11.0"; format = "setuptools"; disabled = pythonOlder "3.9"; @@ -26,7 +26,7 @@ buildPythonPackage rec { owner = "bdraco"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-7LFKqC8IHzXKKU5Pw6Qud9jqJFc0lSEJFn636T6CsfQ="; + hash = "sha256-PQPcD2klwXA/7uH1RrdCd26WGaLpcchp7r1M1RXxQ9Y="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/yamlfix/default.nix b/pkgs/development/python-modules/yamlfix/default.nix index 122a39d826151..26b39ed87ed5e 100644 --- a/pkgs/development/python-modules/yamlfix/default.nix +++ b/pkgs/development/python-modules/yamlfix/default.nix @@ -3,7 +3,8 @@ , click , fetchFromGitHub , maison -, pdm-pep517 +, pdm-backend +, pytest-freezegun , pytest-xdist , pytestCheckHook , pythonOlder @@ -13,21 +14,21 @@ buildPythonPackage rec { pname = "yamlfix"; - version = "1.13.0"; - format = "pyproject"; + version = "1.16.0"; + pyproject = true; - disabled = pythonOlder "3.7"; + disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "lyz-code"; - repo = pname; + repo = "yamlfix"; rev = "refs/tags/${version}"; - hash = "sha256-GoCQtanQHYOFrhRvZjzk/cCPnUFwYUAclZuYGZfNg5E="; + hash = "sha256-nadyBIzXHbWm0QvympRaYU38tuPJ3TPJg8EbvVv+4L0="; }; nativeBuildInputs = [ setuptools - pdm-pep517 + pdm-backend ]; propagatedBuildInputs = [ @@ -37,14 +38,39 @@ buildPythonPackage rec { ]; nativeCheckInputs = [ + pytest-freezegun pytest-xdist pytestCheckHook ]; + preCheck = '' + export HOME=$(mktemp -d) + ''; + pythonImportsCheck = [ "yamlfix" ]; + disabledTests = [ + # AssertionError: assert ... Fixed <stdin> in... + "test_check_one_file_no_changes" + "test_config_parsing" + "test_corrects_code_from_stdin" + "test_corrects_one_file" + "test_corrects_three_files" + "test_empty_list_inline_comment_indentation" + "test_find_files" + "test_fix_code_converts_non_valid_false_booleans" + "test_ignores_correct_files" + "test_include_exclude_files" + "test_read_prefixed_environment_variables" + "test_section_whitelines" + "test_whitelines" + "test_sequence_style_env_enum_parsing" + "test_verbose_option" + "test_enforcing_flow_style_together_with_adjustable_newlines" + ]; + meta = with lib; { description = "Python YAML formatter that keeps your comments"; homepage = "https://github.com/lyz-code/yamlfix"; diff --git a/pkgs/development/python-modules/yappi/default.nix b/pkgs/development/python-modules/yappi/default.nix index cb12c4f63f372..1e20c1ba2eab7 100644 --- a/pkgs/development/python-modules/yappi/default.nix +++ b/pkgs/development/python-modules/yappi/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "yappi"; - version = "1.4.0"; + version = "1.6.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "sumerc"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-AogBnqhLcwsyTHLP+Uxc+EOgYzhdwX5rbi9RMCuC2IU="; + hash = "sha256-zA4apOGyrbjBOxUKBARiKmmM9rSVFVGWsDpOaItOoLU="; }; patches = [ diff --git a/pkgs/development/python-modules/yara-python/default.nix b/pkgs/development/python-modules/yara-python/default.nix index 403ee6df52bd9..cff5b329e6ca6 100644 --- a/pkgs/development/python-modules/yara-python/default.nix +++ b/pkgs/development/python-modules/yara-python/default.nix @@ -1,6 +1,7 @@ { lib , buildPythonPackage , fetchFromGitHub +, setuptools , pytestCheckHook , pythonOlder , yara @@ -8,8 +9,8 @@ buildPythonPackage rec { pname = "yara-python"; - version = "4.3.1"; - format = "setuptools"; + version = "4.4.0"; + pyproject = true; disabled = pythonOlder "3.7"; @@ -17,9 +18,20 @@ buildPythonPackage rec { owner = "VirusTotal"; repo = "yara-python"; rev = "v${version}"; - hash = "sha256-WjH27pOOBXmbj8ghr42TLTp8eAKiTq4eRTYnim56J/8="; + hash = "sha256-Fl/0ordXDKC1CBBmPx0fEwZZjqSiMxnwNvQqD98MjRo="; }; + # undefined symbol: yr_finalize + # https://github.com/VirusTotal/yara-python/issues/7 + postPatch = '' + substituteInPlace setup.py \ + --replace "include_dirs=['yara/libyara/include', 'yara/libyara/', '.']" "libraries = ['yara']" + ''; + + nativeBuildInputs = [ + setuptools + ]; + buildInputs = [ yara ]; diff --git a/pkgs/development/python-modules/yaramod/default.nix b/pkgs/development/python-modules/yaramod/default.nix index 1f459858dfa07..78920969bc958 100644 --- a/pkgs/development/python-modules/yaramod/default.nix +++ b/pkgs/development/python-modules/yaramod/default.nix @@ -20,7 +20,7 @@ let in buildPythonPackage rec { pname = "yaramod"; - version = "3.20.2"; + version = "3.21.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -29,7 +29,7 @@ in owner = "avast"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-OLsTvG+qaUJlKdHwswGBifzoT/uNunrrVWQg7hJxkhE="; + hash = "sha256-YkMDoFwWPrDhAgDnPpNCU1NlnAPhwYQF/KFaRFn+juQ="; }; postPatch = '' diff --git a/pkgs/development/python-modules/yark/default.nix b/pkgs/development/python-modules/yark/default.nix index f7b9f696d6cff..83e1b909793ed 100644 --- a/pkgs/development/python-modules/yark/default.nix +++ b/pkgs/development/python-modules/yark/default.nix @@ -1,25 +1,27 @@ { lib , buildPythonPackage -, fetchPypi -, poetry-core -, pythonRelaxDepsHook , click , colorama +, fetchPypi , flask +, poetry-core +, progress +, pythonOlder +, pythonRelaxDepsHook , requests , yt-dlp -, progress }: buildPythonPackage rec { pname = "yark"; - version = "1.2.9"; + version = "1.2.10"; + pyproject = true; - format = "pyproject"; + disabled = pythonOlder "3.9"; src = fetchPypi { inherit pname version; - hash = "sha256-g9JwFnB4tFuvRvQGEURbIB2gaXQgCQJkL1sNmYMFvck="; + hash = "sha256-Y1fWHpvrqGuBPyJ2dO2y0W2zhEgcTJABtkOAoZ7uyZU="; }; pythonRelaxDeps = [ @@ -40,8 +42,7 @@ buildPythonPackage rec { yt-dlp ]; - # There aren't any unit tests. If test discovery runs, it will crash, halting the build. - # When upstream adds unit tests, please configure them here. Thanks! ~ C. + # Module has no tests doCheck = false; pythonImportsCheck = [ @@ -49,9 +50,10 @@ buildPythonPackage rec { ]; meta = with lib; { - description = "YouTube archiving made simple"; + description = "Module for YouTube archiving"; homepage = "https://github.com/Owez/yark"; + changelog = "https://github.com/Owez/yark/releases/tag/v${version}"; license = licenses.mit; - maintainers = [ ]; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/development/python-modules/yfinance/default.nix b/pkgs/development/python-modules/yfinance/default.nix index b8ec40d9e03be..fb771047db112 100644 --- a/pkgs/development/python-modules/yfinance/default.nix +++ b/pkgs/development/python-modules/yfinance/default.nix @@ -17,7 +17,7 @@ buildPythonPackage rec { pname = "yfinance"; - version = "0.2.35"; + version = "0.2.36"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -26,7 +26,7 @@ buildPythonPackage rec { owner = "ranaroussi"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-uLcnTH3teLxW6LZCJUD3jOPLm1a2jAK1bg4tKSSNXKU="; + hash = "sha256-oBpkWKQZ5FA+nyNWVOlRzoEyShCfh6SqCCrkFZBu1rQ="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/yolink-api/default.nix b/pkgs/development/python-modules/yolink-api/default.nix index ceff77e4d2b73..5ad89d0bced2c 100644 --- a/pkgs/development/python-modules/yolink-api/default.nix +++ b/pkgs/development/python-modules/yolink-api/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "yolink-api"; - version = "0.3.4"; + version = "0.3.6"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "YoSmart-Inc"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-wDZlzl178SIXxo5SacbbXWHhF4wOsjBU4a9h0jBYA4c="; + hash = "sha256-KqQUaPac0nv8L3mrGn+nlzlB6mzqa5uMAceHlVKS1Ew="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/ytmusicapi/default.nix b/pkgs/development/python-modules/ytmusicapi/default.nix index d0aebbc5138cc..700a250130aa5 100644 --- a/pkgs/development/python-modules/ytmusicapi/default.nix +++ b/pkgs/development/python-modules/ytmusicapi/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "ytmusicapi"; - version = "1.4.2"; + version = "1.5.2"; pyproject = true; disabled = pythonOlder "3.8"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "sigma67"; repo = "ytmusicapi"; rev = "refs/tags/${version}"; - hash = "sha256-Ho8JEARmw9Pd7A/sYM6Fkp3gfYx4bXbFIvh9pSE7f5c="; + hash = "sha256-3dJ9Mu1cblBJh3BVEyxdfO+RD8kSxpdvnvox7ljMWT4="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/zamg/default.nix b/pkgs/development/python-modules/zamg/default.nix index 294fbc4197d96..d43b0c4c779db 100644 --- a/pkgs/development/python-modules/zamg/default.nix +++ b/pkgs/development/python-modules/zamg/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "zamg"; - version = "0.3.4"; + version = "0.3.5"; pyproject = true; disabled = pythonOlder "3.8"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "killer0071234"; repo = "python-zamg"; rev = "refs/tags/v${version}"; - hash = "sha256-MomqMgL3axMdT/ckx2IG9k0IIDlNq0bod0ukjIvkM7Y="; + hash = "sha256-lT345G0apo4ncM4FMs69+ql+QxvTlsEtG2KRX4oYvlo="; }; postPatch = '' diff --git a/pkgs/development/python-modules/zcbor/default.nix b/pkgs/development/python-modules/zcbor/default.nix index 1525a7610c73a..9bce9e925c1d6 100644 --- a/pkgs/development/python-modules/zcbor/default.nix +++ b/pkgs/development/python-modules/zcbor/default.nix @@ -13,12 +13,12 @@ buildPythonPackage rec { pname = "zcbor"; - version = "0.8.0"; + version = "0.8.1"; pyproject = true; src = fetchPypi { inherit pname version; - hash = "sha256-47HwITfFcHNze3tt4vJxHB4BQ7oyl17DM8IV0WomM5Q="; + hash = "sha256-U3Y/r3tBhzK6bGnMxdqKzS7bLHyAzgpGZ5PVK9pw7Pk="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/zconfig/default.nix b/pkgs/development/python-modules/zconfig/default.nix index c8e852135764b..8947badb91bf0 100644 --- a/pkgs/development/python-modules/zconfig/default.nix +++ b/pkgs/development/python-modules/zconfig/default.nix @@ -1,32 +1,62 @@ { lib , stdenv -, fetchPypi , buildPythonPackage -, zope-testrunner -, manuel , docutils +, fetchPypi +, manuel , pygments +, pytestCheckHook +, pythonOlder +, setuptools +, zope-testrunner }: buildPythonPackage rec { - pname = "ZConfig"; - version = "3.6.1"; + pname = "zconfig"; + version = "4.0"; + pyproject = true; + + disabled = pythonOlder "3.7"; src = fetchPypi { - inherit pname version; - hash = "sha256-RCLH1mOvdizXeVd1NmvGpnq0QKGreW6w90JbDpA08HY="; + pname = "ZConfig"; + inherit version; + hash = "sha256-+NZC+6a6mNCGMb4sH3GtGVfAUf70qj0/ufHgjcYdAVY="; }; patches = lib.optional stdenv.hostPlatform.isMusl ./remove-setlocale-test.patch; - buildInputs = [ manuel docutils ]; - propagatedBuildInputs = [ zope-testrunner ]; - nativeCheckInputs = [ pygments ]; + nativeBuildInputs = [ + setuptools + ]; + + buildInputs = [ + docutils + manuel + ]; + + propagatedBuildInputs = [ + zope-testrunner + ]; + + nativeCheckInputs = [ + pygments + pytestCheckHook + ]; + + pythonImportsCheck = [ + "ZConfig" + ]; + + pytestFlagsArray = [ + "-s" + ]; meta = with lib; { description = "Structured Configuration Library"; - homepage = "https://pypi.python.org/pypi/ZConfig"; + homepage = "https://github.com/zopefoundation/ZConfig"; + changelog = "https://github.com/zopefoundation/ZConfig/blob/${version}/CHANGES.rst"; license = licenses.zpl20; - maintainers = [ maintainers.goibhniu ]; + maintainers = with maintainers; [ goibhniu ]; }; } diff --git a/pkgs/development/python-modules/zfec/default.nix b/pkgs/development/python-modules/zfec/default.nix index fc3b710919bc1..1e135da34b3a7 100644 --- a/pkgs/development/python-modules/zfec/default.nix +++ b/pkgs/development/python-modules/zfec/default.nix @@ -1,8 +1,9 @@ { lib , buildPythonPackage , fetchPypi -, setuptools +, hypothesis , pyutil +, setuptools , twisted }: @@ -20,17 +21,26 @@ buildPythonPackage rec { setuptools ]; - propagatedBuildInputs = [ pyutil ]; + propagatedBuildInputs = [ + pyutil + ]; - nativeCheckInputs = [ twisted ]; + nativeCheckInputs = [ + hypothesis + twisted + ]; - checkPhase = "trial zfec"; + checkPhase = '' + trial zfec + ''; - pythonImportsCheck = [ "zfec" ]; + pythonImportsCheck = [ + "zfec" + ]; meta = with lib; { homepage = "https://github.com/tahoe-lafs/zfec"; - description = "Zfec, a fast erasure codec which can be used with the command-line, C, Python, or Haskell"; + description = "Fast erasure codec which can be used with the command-line, C, Python, or Haskell"; longDescription = '' Fast, portable, programmable erasure coding a.k.a. "forward error correction": the generation of redundant blocks of diff --git a/pkgs/development/python-modules/ziafont/default.nix b/pkgs/development/python-modules/ziafont/default.nix index 4e55583b211be..788dda3329412 100644 --- a/pkgs/development/python-modules/ziafont/default.nix +++ b/pkgs/development/python-modules/ziafont/default.nix @@ -2,13 +2,14 @@ , buildPythonPackage , pythonOlder , fetchFromGitHub +, setuptools , pytestCheckHook , nbval }: buildPythonPackage rec { pname = "ziafont"; - version = "0.6"; + version = "0.7"; format = "pyproject"; @@ -18,9 +19,13 @@ buildPythonPackage rec { owner = "cdelker"; repo = pname; rev = version; - hash = "sha256-3ZVj1ZxbFkFDDYbsIPzo7GMWGx7f5qWZQlcGCVXv73M="; + hash = "sha256-DQEVWYOgiGSP3WlmZzEweyRa0UY7fxjjpbued+5EH5I="; }; + nativeBuildInputs = [ + setuptools + ]; + nativeCheckInputs = [ pytestCheckHook nbval diff --git a/pkgs/development/python-modules/ziamath/default.nix b/pkgs/development/python-modules/ziamath/default.nix index 5e24f3c416707..c2d72a25f8107 100644 --- a/pkgs/development/python-modules/ziamath/default.nix +++ b/pkgs/development/python-modules/ziamath/default.nix @@ -2,6 +2,7 @@ , buildPythonPackage , pythonOlder , fetchFromGitHub +, setuptools , ziafont , pytestCheckHook , nbval @@ -10,7 +11,7 @@ buildPythonPackage rec { pname = "ziamath"; - version = "0.8.1"; + version = "0.9"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -19,9 +20,13 @@ buildPythonPackage rec { owner = "cdelker"; repo = pname; rev = version; - hash = "sha256-Bbwq4Ods3P/724KO94jSmMLD1ubfaMHP/gTlOL/2pnE="; + hash = "sha256-ISd+J7R8qZ0NXdlyHMj+torzr+541UAhNCSaUH8ytSQ="; }; + nativeBuildInputs = [ + setuptools + ]; + propagatedBuildInputs = [ ziafont ]; diff --git a/pkgs/development/python-modules/zigpy-deconz/default.nix b/pkgs/development/python-modules/zigpy-deconz/default.nix index ac6cf8901e04b..721905fb17b8a 100644 --- a/pkgs/development/python-modules/zigpy-deconz/default.nix +++ b/pkgs/development/python-modules/zigpy-deconz/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "zigpy-deconz"; - version = "0.22.4"; + version = "0.23.0"; pyproject = true; disabled = pythonOlder "3.7"; @@ -21,7 +21,7 @@ buildPythonPackage rec { owner = "zigpy"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-MtF9k7Ogsv7gjeZSBvFLsh9LHUFy5z+qYleUI9BC2es="; + hash = "sha256-8U/3YzXyrQ6pOklvfuVFAk2r/mpcUM7HokfBJUhtyh4="; }; postPatch = '' diff --git a/pkgs/development/python-modules/zigpy-znp/default.nix b/pkgs/development/python-modules/zigpy-znp/default.nix index 94fa9cdb0d383..4378570f77f90 100644 --- a/pkgs/development/python-modules/zigpy-znp/default.nix +++ b/pkgs/development/python-modules/zigpy-znp/default.nix @@ -8,6 +8,7 @@ , pytest-mock , pytest-rerunfailures , pytest-timeout +, pytest-xdist , pytestCheckHook , pythonOlder , setuptools @@ -53,6 +54,7 @@ buildPythonPackage rec { pytest-mock pytest-rerunfailures pytest-timeout + pytest-xdist pytestCheckHook ]; diff --git a/pkgs/development/python2-modules/pygtk/default.nix b/pkgs/development/python2-modules/pygtk/default.nix index c3960dd5309d6..003474ee85827 100644 --- a/pkgs/development/python2-modules/pygtk/default.nix +++ b/pkgs/development/python2-modules/pygtk/default.nix @@ -64,8 +64,8 @@ buildPythonPackage rec { postInstall = '' rm $out/bin/pygtk-codegen-2.0 ln -s ${pygobject2}/bin/pygobject-codegen-2.0 $out/bin/pygtk-codegen-2.0 - ln -s ${pygobject2}/lib/${python.libPrefix}/site-packages/pygobject-${pygobject2.version}.pth \ - $out/lib/${python.libPrefix}/site-packages/${pname}-${version}.pth + ln -s ${pygobject2}/${python.sitePackages}/pygobject-${pygobject2.version}.pth \ + $out/${python.sitePackages}/${pname}-${version}.pth ''; meta = with lib; { diff --git a/pkgs/development/r-modules/bioc-annotation-packages.nix b/pkgs/development/r-modules/bioc-annotation-packages.nix index cc091e1b844ca..8d4019a203283 100644 --- a/pkgs/development/r-modules/bioc-annotation-packages.nix +++ b/pkgs/development/r-modules/bioc-annotation-packages.nix @@ -4,15 +4,17 @@ # Rscript generate-r-packages.R bioc-annotation >new && mv new bioc-annotation-packages.nix { self, derive }: -let derive2 = derive { biocVersion = "3.17"; }; +let derive2 = derive { biocVersion = "3.18"; }; in with self; { AHCytoBands = derive2 { name="AHCytoBands"; version="0.99.1"; sha256="0svxxhj3mh5gqik45ikcxnlhnma8n1c0rv8pycj2034cb9ms1dbv"; depends=[]; }; AHEnsDbs = derive2 { name="AHEnsDbs"; version="1.1.10"; sha256="0mqginwp70rwsmqwdl64awj4jr78n17rbaxmik86sk4n98fgd4xf"; depends=[AnnotationHubData ensembldb]; }; - AHLRBaseDbs = derive2 { name="AHLRBaseDbs"; version="1.6.0"; sha256="0vz0chz41w45c1md49grav5jrbhws888ir1si9lp8dw7pj74vy9c"; depends=[AnnotationHub]; }; - AHMeSHDbs = derive2 { name="AHMeSHDbs"; version="1.6.0"; sha256="0jd4i76qnr1vqqm3sq0ll8pdkihbkh83hqxzi3cvl3q786rxc1hk"; depends=[AnnotationHub]; }; + AHLRBaseDbs = derive2 { name="AHLRBaseDbs"; version="1.7.0"; sha256="1nbgqv1c3nyhlniqvqdc5cf8kyys323z1ia5jw54hxwi1jdyclfg"; depends=[AnnotationHub]; }; + AHMeSHDbs = derive2 { name="AHMeSHDbs"; version="1.7.0"; sha256="0hxik2xzvbgv6a936mvax5kyv65drr36r9rf7rlv124jinlbxw82"; depends=[AnnotationHub]; }; AHPathbankDbs = derive2 { name="AHPathbankDbs"; version="0.99.5"; sha256="10wcrglm521xcrfbzc39dkbjvg1pkz0zq70vgnh68akiwmdirp89"; depends=[AnnotationHub]; }; - AHPubMedDbs = derive2 { name="AHPubMedDbs"; version="1.6.0"; sha256="1lhr1gzifg7h73q1k4yrx508v6ynr0pa2kyj4733rwmr2z26n0gp"; depends=[AnnotationHub]; }; + AHPubMedDbs = derive2 { name="AHPubMedDbs"; version="1.7.0"; sha256="0a14xjhh95pwnyy4c1vij6p63pmgry8fffx4zbirczzzrxsc9cvp"; depends=[AnnotationHub]; }; AHWikipathwaysDbs = derive2 { name="AHWikipathwaysDbs"; version="0.99.4"; sha256="0vz3p9sx36bwzl9rq0ffh7klbq13pv2yhgjq1cjk7ll8z226c0q4"; depends=[AnnotationHub]; }; + AlphaMissense_v2023_hg19 = derive2 { name="AlphaMissense.v2023.hg19"; version="3.18.2"; sha256="0622yzywf3655rsh1ckmfvx0crm715a227bg5zz5znz7zfnlsl8y"; depends=[AnnotationHub GenomicScores]; }; + AlphaMissense_v2023_hg38 = derive2 { name="AlphaMissense.v2023.hg38"; version="3.18.2"; sha256="080c0282hcls96pd9mjljv2y1y6sy6nhqzlqwl5a2knq1aql4mna"; depends=[AnnotationHub GenomicScores]; }; BSgenome_Alyrata_JGI_v1 = derive2 { name="BSgenome.Alyrata.JGI.v1"; version="1.0.1"; sha256="062ap94m6s4w8clg1zlj223wmgbmq19yhksx9fcdcqrxr5kbfv85"; depends=[BSgenome]; }; BSgenome_Amellifera_BeeBase_assembly4 = derive2 { name="BSgenome.Amellifera.BeeBase.assembly4"; version="1.4.0"; sha256="02zs16q441zcbfp7xvv1gny5nn02ivfr8md1wh5s5rpnj6sdl6kj"; depends=[BSgenome]; }; BSgenome_Amellifera_NCBI_AmelHAv3_1 = derive2 { name="BSgenome.Amellifera.NCBI.AmelHAv3.1"; version="1.5.0"; sha256="1cglml4rlqr5hmf4dx51grx6s25h6xc3lqv569nx2sl4gdz28s47"; depends=[BSgenome]; }; @@ -126,7 +128,7 @@ in with self; { BSgenome_Vvinifera_URGI_IGGP12Xv0 = derive2 { name="BSgenome.Vvinifera.URGI.IGGP12Xv0"; version="0.1"; sha256="1m8mqkiqs7291hccb8pfyf2yxpky45qr6j3d9wkvp9x3ra3h0yxf"; depends=[BSgenome]; }; BSgenome_Vvinifera_URGI_IGGP12Xv2 = derive2 { name="BSgenome.Vvinifera.URGI.IGGP12Xv2"; version="0.1"; sha256="1saavsi75gw33jphhm3qb5psyfrv850ss4cmqr4i7aw1kc0fvs1j"; depends=[BSgenome]; }; BSgenome_Vvinifera_URGI_IGGP8X = derive2 { name="BSgenome.Vvinifera.URGI.IGGP8X"; version="0.1"; sha256="0v0hi2pbbi5ynd92bvbv4bzr7bgv48kvyz62hdv7k9gh7s5pg0id"; depends=[BSgenome]; }; - BioMartGOGeneSets = derive2 { name="BioMartGOGeneSets"; version="0.99.10"; sha256="1lnxh564l4qib7bqjmil3hlnfzg8f8ka22lhc72arw434dv5xxqh"; depends=[GenomicRanges S4Vectors]; }; + BioMartGOGeneSets = derive2 { name="BioMartGOGeneSets"; version="0.99.11"; sha256="1ack8v1q0zg15gs816n9f4pwrzrpsv4va6j0r8847pw0pvavwpiq"; depends=[GenomicRanges S4Vectors]; }; CTCF = derive2 { name="CTCF"; version="0.99.11"; sha256="06gy1f71p01h6yfj5xmvlgz6n7sg7rpkc3723y51h30ir6xrzbrg"; depends=[]; }; ChemmineDrugs = derive2 { name="ChemmineDrugs"; version="1.0.2"; sha256="0l47ac6lkycmghra2cbcdcxcv47ari8xg6lxpzilvkf4n6ld6064"; depends=[BiocGenerics ChemmineR RSQLite]; }; DO_db = derive2 { name="DO.db"; version="2.9"; sha256="10bqqa124l61ivzy4mdd3z3ar9a6537qbxw23pc4y9w8a6dwnavn"; depends=[AnnotationDbi]; }; @@ -149,11 +151,12 @@ in with self; { FDb_UCSC_snp137common_hg19 = derive2 { name="FDb.UCSC.snp137common.hg19"; version="1.0.0"; sha256="1q1r7rk29q0zlzxz6fvfy1kjfli6wxzvhvhhfnf3z4ksy5332q63"; depends=[AnnotationDbi GenomicFeatures]; }; FDb_UCSC_tRNAs = derive2 { name="FDb.UCSC.tRNAs"; version="1.0.1"; sha256="1dymdalx9fzrplxyc0fd9faa4r5jimi7zyry9k65lyz1pabpkwqz"; depends=[AnnotationDbi GenomicFeatures]; }; GGHumanMethCancerPanelv1_db = derive2 { name="GGHumanMethCancerPanelv1.db"; version="1.4.1"; sha256="0ag1pkbh4mx4aplfrrz1q4f4cl05mczq9pcsfkd1071qk51dcwvx"; depends=[AnnotationDbi AnnotationForge org_Hs_eg_db]; }; - GO_db = derive2 { name="GO.db"; version="3.17.0"; sha256="072062xdhjsadzwlkp4gas7fyxnajg3xjd2vfadc7j0k1034igjx"; depends=[AnnotationDbi]; }; - GeneSummary = derive2 { name="GeneSummary"; version="0.99.5"; sha256="1k3yi6872s9sdzc8732aqshzgzyz7pqwr8jh6z7dnpr73kv0n1yj"; depends=[]; }; - GenomeInfoDbData = derive2 { name="GenomeInfoDbData"; version="1.2.10"; sha256="0r7qb1nh680c0d5iplr2r0xb2prirvcc1xam5m8qyghndmaxpibl"; depends=[]; }; + GO_db = derive2 { name="GO.db"; version="3.18.0"; sha256="0znqa724jvrw2xx696n48lx83kzhivfr7fc9awzgm7nigwg3907m"; depends=[AnnotationDbi]; }; + GeneSummary = derive2 { name="GeneSummary"; version="0.99.6"; sha256="0h6afrjb00afrcw6mwslxp7cmwfzp4qfxh0aa4f41kfjd3cymmp5"; depends=[]; }; + GenomeInfoDbData = derive2 { name="GenomeInfoDbData"; version="1.2.11"; sha256="1hkvcrp4a2g3yl1h4k5zzj5fhp3d9a1amyn19zr62q9fhj3y47ri"; depends=[]; }; GenomicState = derive2 { name="GenomicState"; version="0.99.15"; sha256="1r7z3n6wyrd2cclj5b7sg15wpmjdh9k5b1hjlw7jjx8j384l7l1h"; depends=[AnnotationDbi AnnotationHub bumphunter derfinder GenomeInfoDb GenomicFeatures IRanges org_Hs_eg_db rtracklayer]; }; HDO_db = derive2 { name="HDO.db"; version="0.99.1"; sha256="14ngyxailmxrbxqqi9m7mchqcvchmbg7zm34i8a927b20s6z4z61"; depends=[AnnotationDbi]; }; + HPO_db = derive2 { name="HPO.db"; version="0.99.2"; sha256="1brzrnafvyh76h8a663gk5lprhixxpi9xi65vwgxwf7jh6yw0was"; depends=[AnnotationDbi AnnotationHub BiocFileCache DBI]; }; Homo_sapiens = derive2 { name="Homo.sapiens"; version="1.3.1"; sha256="151vj7h5p1c8yd5swrchk46z469p135wk50hvkl0nhgndvy0jj01"; depends=[AnnotationDbi GenomicFeatures GO_db org_Hs_eg_db OrganismDbi TxDb_Hsapiens_UCSC_hg19_knownGene]; }; Hs6UG171_db = derive2 { name="Hs6UG171.db"; version="3.2.3"; sha256="034aady3hy8j9bm7pbl8l8h0gcfnzmpyxg9l9s1ky0pj7ryzr93a"; depends=[AnnotationDbi org_Hs_eg_db]; }; HsAgilentDesign026652_db = derive2 { name="HsAgilentDesign026652.db"; version="3.2.3"; sha256="0x6nxvzmc8k4qp382ca32y58awkxpg0b3kc7m1mz9iag6sq7c5vx"; depends=[AnnotationDbi org_Hs_eg_db]; }; @@ -175,10 +178,12 @@ in with self; { JASPAR2018 = derive2 { name="JASPAR2018"; version="1.1.1"; sha256="1iq5b51ryah2ccdx16yyigfa2jiapcpm94l6vgvd4v7b94jjp8l7"; depends=[]; }; JASPAR2020 = derive2 { name="JASPAR2020"; version="0.99.10"; sha256="0nrp63z7q2ivv5h87f7inpp2qll2dfgj4227l4rbnzii38a2vfdr"; depends=[]; }; JASPAR2022 = derive2 { name="JASPAR2022"; version="0.99.7"; sha256="0sayaxsazcsbwdkisjfmkc01piahkqi9xks3rfj60cf56wrjlbpa"; depends=[BiocFileCache]; }; + JASPAR2024 = derive2 { name="JASPAR2024"; version="0.99.6"; sha256="1l169kwymylqz67fz182fgq22nvg3cg12p2r8drgibs2d72khcpf"; depends=[BiocFileCache]; }; JazaeriMetaData_db = derive2 { name="JazaeriMetaData.db"; version="3.2.3"; sha256="04lvcmm4ybxkfwgbiwcnpyj6kpbd0gd7jz6ijlbbvv6zdgdmvykb"; depends=[AnnotationDbi org_Hs_eg_db]; }; LAPOINTE_db = derive2 { name="LAPOINTE.db"; version="3.2.3"; sha256="0960gy5p4ybs5zs6251cgc3nk5a9gsh1nh23gkbkr3gc8jddinfm"; depends=[AnnotationDbi org_Hs_eg_db]; }; LowMACAAnnotation = derive2 { name="LowMACAAnnotation"; version="0.99.3"; sha256="0ri301ci54s8wwkah1jccy5h44xg8yjk08j5b15qmdsm25hli4wm"; depends=[]; }; LymphoSeqDB = derive2 { name="LymphoSeqDB"; version="0.99.2"; sha256="1cdyn2imjh4zr23szndc4vwyiacxs1jsp14gil2dyq9aifa25qr7"; depends=[]; }; + MPO_db = derive2 { name="MPO.db"; version="0.99.7"; sha256="0x1rcikg189akbd71yh0p02482km9hry6i69s2srdf5mlgqficvl"; depends=[AnnotationDbi AnnotationHub BiocFileCache DBI]; }; MafDb_1Kgenomes_phase1_GRCh38 = derive2 { name="MafDb.1Kgenomes.phase1.GRCh38"; version="3.10.0"; sha256="057531mvxip32lyqak4hh964ms0cil29p5cch5fpjw5vbbzidrlc"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; MafDb_1Kgenomes_phase1_hs37d5 = derive2 { name="MafDb.1Kgenomes.phase1.hs37d5"; version="3.10.0"; sha256="0vsjik59qa36w402bcrd5z27wc9vyp4gl0ffcwskd9iwjqim0phi"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; MafDb_1Kgenomes_phase3_GRCh38 = derive2 { name="MafDb.1Kgenomes.phase3.GRCh38"; version="3.10.0"; sha256="0ibww7ml5cfyx8h198fgrnf13vvsxxb5spf7hcmm6z3hha6j2ij0"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; @@ -193,7 +198,6 @@ in with self; { MafDb_gnomAD_r2_1_hs37d5 = derive2 { name="MafDb.gnomAD.r2.1.hs37d5"; version="3.10.0"; sha256="153dy3lx0islfdkmyik7lxp1w2yzb0bqmia673hlwi4rmvns112h"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; MafDb_gnomADex_r2_1_GRCh38 = derive2 { name="MafDb.gnomADex.r2.1.GRCh38"; version="3.10.0"; sha256="1v0sdjmn9z8gqn4yj4v04zycj3ngr32r04zqmkp6y41hcgdr8lxw"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; MafDb_gnomADex_r2_1_hs37d5 = derive2 { name="MafDb.gnomADex.r2.1.hs37d5"; version="3.10.0"; sha256="0y42ncmilijdxsgqsmskz7gff3il3fdf2kpflknmz1z9kybzaday"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; - MafH5_gnomAD_v3_1_1_GRCh38 = derive2 { name="MafH5.gnomAD.v3.1.1.GRCh38"; version="3.13.1"; sha256="1hwl1k0h7p6kkzw0v0z177nlbjqlrr9x5nkrils2529g3ysrp3ky"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores HDF5Array IRanges rhdf5 S4Vectors]; }; MafH5_gnomAD_v3_1_2_GRCh38 = derive2 { name="MafH5.gnomAD.v3.1.2.GRCh38"; version="3.15.0"; sha256="18hzw7f41ii16qpm3ch516b773900l1m1id5z6a763m01fg0mhiq"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores HDF5Array IRanges rhdf5 S4Vectors]; }; MmAgilentDesign026655_db = derive2 { name="MmAgilentDesign026655.db"; version="3.2.3"; sha256="00d0yjcb5id7zacx4bzdwy4q6f4qvnnx8ph4d4xz1fmcbspz2qiz"; depends=[AnnotationDbi org_Mm_eg_db]; }; MoExExonProbesetLocation = derive2 { name="MoExExonProbesetLocation"; version="1.15.0"; sha256="0bvj3bji4bwwmxjz4b57n1aqypdibdmry30rfwmlxss1hav96sl7"; depends=[AnnotationDbi]; }; @@ -202,9 +206,9 @@ in with self; { Mus_musculus = derive2 { name="Mus.musculus"; version="1.3.1"; sha256="143zdf83gbfqhy8jm9df7gzhw5q3a64jrjrxrzjf0zd76j8s8j6y"; depends=[AnnotationDbi GenomicFeatures GO_db org_Mm_eg_db OrganismDbi TxDb_Mmusculus_UCSC_mm10_knownGene]; }; Norway981_db = derive2 { name="Norway981.db"; version="3.2.3"; sha256="04ngc2hilqi9m7933mnm7jcvkxlz68vqqh5b628db575vcxql9b9"; depends=[AnnotationDbi org_Hs_eg_db]; }; OperonHumanV3_db = derive2 { name="OperonHumanV3.db"; version="3.2.3"; sha256="082gff88cwk2p50q8g9bixggacaclgqcvk6w5dc11h9fkgvd160i"; depends=[AnnotationDbi org_Hs_eg_db]; }; - Orthology_eg_db = derive2 { name="Orthology.eg.db"; version="3.17.0"; sha256="06vvfr3rw44kgwa90wp1byijpy4svx25136kb7n658qkhsivgv0c"; depends=[AnnotationDbi]; }; - PANTHER_db = derive2 { name="PANTHER.db"; version="1.0.11"; sha256="0ckhrbhcxf7lq1hz1lrkrb7djjsfy7m0abf3665aagk6vvzigxy8"; depends=[AnnotationDbi AnnotationHub BiocFileCache RSQLite]; }; - PFAM_db = derive2 { name="PFAM.db"; version="3.17.0"; sha256="04hp22k2w6i81l3z22msqgjp4q37w5mi3i74yxzghb80pzmqnkwc"; depends=[AnnotationDbi]; }; + Orthology_eg_db = derive2 { name="Orthology.eg.db"; version="3.18.0"; sha256="11v6fm2403m32q9k70n5p839a4awks7avcfaa8rvrm59v0ab5czj"; depends=[AnnotationDbi]; }; + PANTHER_db = derive2 { name="PANTHER.db"; version="1.0.12"; sha256="05ydg87cix86hp6hkkqmcniy69q5zyb3xyc3q7bykp26bvrgjvqq"; depends=[AnnotationDbi AnnotationHub BiocFileCache RSQLite]; }; + PFAM_db = derive2 { name="PFAM.db"; version="3.18.0"; sha256="15m7qfvz53jkdmx90y7rvy62myr4y3hdy414yqi0w3ch32vy78nr"; depends=[AnnotationDbi]; }; POCRCannotation_db = derive2 { name="POCRCannotation.db"; version="3.2.3"; sha256="0ybvs4hrxpivdkhm0fxpib11vlxqqdk8prlyj78vj5qzyb3iy89d"; depends=[AnnotationDbi org_Hs_eg_db]; }; PartheenMetaData_db = derive2 { name="PartheenMetaData.db"; version="3.2.3"; sha256="0d37c5b7s3fgkkvg7sj7gl9ksrjk5pyyv54vkys8w3qwgsm8yrdz"; depends=[AnnotationDbi org_Hs_eg_db]; }; PolyPhen_Hsapiens_dbSNP131 = derive2 { name="PolyPhen.Hsapiens.dbSNP131"; version="1.0.2"; sha256="1kikygkli41sn3rqihz0924prmqg2264ifj29vmg1a7qccm0kf7c"; depends=[AnnotationDbi RSQLite VariantAnnotation]; }; @@ -223,6 +227,7 @@ in with self; { SNPlocs_Hsapiens_dbSNP150_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP150.GRCh38"; version="0.99.20"; sha256="0jkwwgxxpm9ry8kizq8hs70sky41pks1ag40y5aqq91yjbpqlckj"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; SNPlocs_Hsapiens_dbSNP155_GRCh37 = derive2 { name="SNPlocs.Hsapiens.dbSNP155.GRCh37"; version="0.99.24"; sha256="0am2r8hn5ybxlvlw7c0i91n5xii0km3iy7d9a0wc9v1ykvk6qmgz"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; SNPlocs_Hsapiens_dbSNP155_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP155.GRCh38"; version="0.99.24"; sha256="1yzywcyk1yngjys9pyykilzw0w4nfxdmwz04w3b17chsbxvckl5s"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + SomaScan_db = derive2 { name="SomaScan.db"; version="0.99.7"; sha256="012v0ph9mkdl13111qamzkdfpdklbq94ry6scjhbhjqm4igmz79r"; depends=[AnnotationDbi DBI org_Hs_eg_db]; }; TxDb_Athaliana_BioMart_plantsmart22 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart22"; version="3.0.1"; sha256="0j2zr4cddad7z1lxx9m9kfgyy7jajjnblpk9j8igd39ia3ixrpzc"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Athaliana_BioMart_plantsmart25 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart25"; version="3.1.3"; sha256="0a6v0l6p13zmiysi3k8dxzdlxng552qqj9rnlbdavdiidla0pvm3"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Athaliana_BioMart_plantsmart28 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart28"; version="3.2.2"; sha256="1yjyvrbx55y024lqg3b2rlf8pngqw5xi3p83j5ipan05wf0aq6ir"; depends=[AnnotationDbi GenomicFeatures]; }; @@ -247,15 +252,15 @@ in with self; { TxDb_Hsapiens_UCSC_hg18_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg18.knownGene"; version="3.2.2"; sha256="1yk9ggclkqqfzrdp8gcqyplvif824pa7df54ck5gb1xb9q5s975w"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Hsapiens_UCSC_hg19_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg19.knownGene"; version="3.2.2"; sha256="1sajhcqqwazgz2lqbik7rd935i7kpnh08zxbp2ra10j72yqy4g86"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Hsapiens_UCSC_hg19_lincRNAsTranscripts = derive2 { name="TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts"; version="3.2.2"; sha256="0bmbp7kydvviczw8axgxq2wdlwq6fdas90jk9bg56avjq5syws2g"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Hsapiens_UCSC_hg38_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg38.knownGene"; version="3.17.0"; sha256="14df4ywnndivz5fl2w7k7j87b3ymxrwipd0bcbbik386qiirn36b"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Hsapiens_UCSC_hg38_refGene = derive2 { name="TxDb.Hsapiens.UCSC.hg38.refGene"; version="3.15.0"; sha256="03ca3spvhci16fndy82fx0cik0a6yqj77l6nfvv5k9qg3xnrp179"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Hsapiens_UCSC_hg38_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg38.knownGene"; version="3.18.0"; sha256="0ak6acjll2djamakpn60ks47lfs2y0r8xwhjazj6fvch34xkc2d5"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Hsapiens_UCSC_hg38_refGene = derive2 { name="TxDb.Hsapiens.UCSC.hg38.refGene"; version="3.18.0"; sha256="03wfafd03gni9wpavfwjzfjhx6z8hv4f4jnh4hkjbxqld32sg1kr"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Mmulatta_UCSC_rheMac10_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac10.refGene"; version="3.14.0"; sha256="12gxs6s57l22013g40b7hb09vxhmdri73cp9rgs2icb88p7sjlib"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Mmulatta_UCSC_rheMac3_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac3.refGene"; version="3.12.0"; sha256="1a0wbh4dajpgynmw2iwbvp836nklzlk0cfhqnwmqq9l4gzzh2w07"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Mmulatta_UCSC_rheMac8_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac8.refGene"; version="3.12.0"; sha256="1k7mq3p96wfd0694zw00hs4529zvv8nnfdwlsb94bn11qjhr1zrz"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Mmusculus_UCSC_mm10_ensGene = derive2 { name="TxDb.Mmusculus.UCSC.mm10.ensGene"; version="3.4.0"; sha256="0saxi1fdiwd38sfvy1rynd3v44rbp158jv6sjqcivvaqnd84zg9s"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Mmusculus_UCSC_mm10_knownGene = derive2 { name="TxDb.Mmusculus.UCSC.mm10.knownGene"; version="3.10.0"; sha256="0xs9npnhbwll7p62hibs02y4ac23jchdcr25i6a7qwq1kms82qk9"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Mmusculus_UCSC_mm39_knownGene = derive2 { name="TxDb.Mmusculus.UCSC.mm39.knownGene"; version="3.17.0"; sha256="1y02x3jzgqqb3qp5rlkk3wmfh8avls3ams40yaxkypy2gk8xp5lv"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Mmusculus_UCSC_mm39_refGene = derive2 { name="TxDb.Mmusculus.UCSC.mm39.refGene"; version="3.12.0"; sha256="0465dma4q6jkyx23vkq4yz252mm1ksr3186cbjdqvnang57m5lc6"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Mmusculus_UCSC_mm39_knownGene = derive2 { name="TxDb.Mmusculus.UCSC.mm39.knownGene"; version="3.18.0"; sha256="061rfyddq15sz684jchvwxww1ipi94xljcgwbz4a92k8i9cnysva"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Mmusculus_UCSC_mm39_refGene = derive2 { name="TxDb.Mmusculus.UCSC.mm39.refGene"; version="3.18.0"; sha256="0f7392c9zd5489jfsdxvwwmpnzscp70ayxv78gcg50m5mkgwaydv"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Mmusculus_UCSC_mm9_knownGene = derive2 { name="TxDb.Mmusculus.UCSC.mm9.knownGene"; version="3.2.2"; sha256="16bjxy00363hf91ik2mqlqls86i07gia72qh92xc3l1ncch61mx2"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Ptroglodytes_UCSC_panTro4_refGene = derive2 { name="TxDb.Ptroglodytes.UCSC.panTro4.refGene"; version="3.12.0"; sha256="036g5zn9rzy8qivb1snhpancsz1z60i3r7z3g91bgla4jpgwwjv6"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Ptroglodytes_UCSC_panTro5_refGene = derive2 { name="TxDb.Ptroglodytes.UCSC.panTro5.refGene"; version="3.12.0"; sha256="0yypv9iqn4i36hnvcr2lsfgaabl8g2pm72ya4psvia261jr2i12i"; depends=[AnnotationDbi GenomicFeatures]; }; @@ -271,7 +276,7 @@ in with self; { TxDb_Sscrofa_UCSC_susScr11_refGene = derive2 { name="TxDb.Sscrofa.UCSC.susScr11.refGene"; version="3.12.0"; sha256="1i3w8avi5ihkynapya1wy70i6f0nq4jyy5nvlwikppqpdjwn7gb4"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Sscrofa_UCSC_susScr3_refGene = derive2 { name="TxDb.Sscrofa.UCSC.susScr3.refGene"; version="3.12.0"; sha256="01bl7zdxyhhg4706jhi7271fs09riixkyr3x0bancl1fpzwszc6p"; depends=[AnnotationDbi GenomicFeatures]; }; UCSCRepeatMasker = derive2 { name="UCSCRepeatMasker"; version="3.15.2"; sha256="0hi1h8vvbf27wk13gbfgm0amjqgl7b2qxlgakcbr87qxwbi02zv7"; depends=[AnnotationHub GenomeInfoDb RCurl XML]; }; - UniProtKeywords = derive2 { name="UniProtKeywords"; version="0.99.6"; sha256="1p2kzr959k0c713l4cba624i0av6jm0cn26975wrdhr86v7isj7g"; depends=[]; }; + UniProtKeywords = derive2 { name="UniProtKeywords"; version="0.99.7"; sha256="10id2lk2mbccay7p44pk58zhkiqc58x237qr76plivgpcc8xhjzq"; depends=[]; }; XtraSNPlocs_Hsapiens_dbSNP144_GRCh37 = derive2 { name="XtraSNPlocs.Hsapiens.dbSNP144.GRCh37"; version="0.99.12"; sha256="0k823fvqjmdkmd47m7wyra6jxmv8lnk2i1xl4pp0mh3zgb87hgfb"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; XtraSNPlocs_Hsapiens_dbSNP144_GRCh38 = derive2 { name="XtraSNPlocs.Hsapiens.dbSNP144.GRCh38"; version="0.99.12"; sha256="0d4q32ij2x4726wvw06sgmivid0n94vfdmszdyh607xlcahqxa5z"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; adme16cod_db = derive2 { name="adme16cod.db"; version="3.4.0"; sha256="1vn9s1lrl6zzs00madb111fdzqjfb45mprpjqap8bvib65942rvq"; depends=[AnnotationDbi org_Rn_eg_db]; }; @@ -280,22 +285,24 @@ in with self; { agprobe = derive2 { name="agprobe"; version="2.18.0"; sha256="1vnawamcpz16na8nmlq2czfxcr325fwdnngxl65mmnbd0f4lmy3k"; depends=[AnnotationDbi]; }; alternativeSplicingEvents_hg19 = derive2 { name="alternativeSplicingEvents.hg19"; version="1.1.0"; sha256="0q90nw3ds66zbyn3ch19lq1qimd1hz1s3jyyd6zi3v10p5s8bm0y"; depends=[AnnotationHub]; }; alternativeSplicingEvents_hg38 = derive2 { name="alternativeSplicingEvents.hg38"; version="1.1.0"; sha256="18qabggvs9mcg8fwd6prdca8lfxn9r9i0493l667n8jl9vy2pbfc"; depends=[AnnotationHub]; }; - anopheles_db0 = derive2 { name="anopheles.db0"; version="3.17.0"; sha256="09i1s2q44wy0ai45gzci6bymbs6blxzv82pakxgmlaazslx9wcwg"; depends=[AnnotationDbi]; }; - arabidopsis_db0 = derive2 { name="arabidopsis.db0"; version="3.17.0"; sha256="121fg8j4i6ayf7yqjfp3mhhib10xklh9nays7z35ddi8zv1j852n"; depends=[AnnotationDbi]; }; + anopheles_db0 = derive2 { name="anopheles.db0"; version="3.18.0"; sha256="197p9dc3rn8vri3frmsrq9r033g2dd0dvbdabgcm8ailyphwpmqq"; depends=[AnnotationDbi]; }; + arabidopsis_db0 = derive2 { name="arabidopsis.db0"; version="3.18.0"; sha256="1dv2vrzq6anf422jxa9vssvwc68m1x3cp9543liq3ajprz1alh35"; depends=[AnnotationDbi]; }; ath1121501_db = derive2 { name="ath1121501.db"; version="3.13.0"; sha256="0v4vapbns71dpv09857lyrnliq202i8yi4ar9z81wbpbc22lhf0d"; depends=[AnnotationDbi org_At_tair_db]; }; ath1121501cdf = derive2 { name="ath1121501cdf"; version="2.18.0"; sha256="1naq8f8dwgbmndx178nm2pw6hjx5ljx0w1wb4dfjifnl4bs5rqcc"; depends=[AnnotationDbi]; }; ath1121501probe = derive2 { name="ath1121501probe"; version="2.18.0"; sha256="0a2nd8zhp3ybis780l3rrmwcxskbl3a111g8w6m8qfwsw5vnlqg1"; depends=[AnnotationDbi]; }; barley1cdf = derive2 { name="barley1cdf"; version="2.18.0"; sha256="0rbij5cqr2sz33y5waybv85nrcgf70iwj5gk13g0xn9p1l1zxyn2"; depends=[AnnotationDbi]; }; barley1probe = derive2 { name="barley1probe"; version="2.18.0"; sha256="1kh5r748b4vkmvlfaclmrh07ypbrzgxn90liqfz1rwkabh6rfk71"; depends=[AnnotationDbi]; }; bovine_db = derive2 { name="bovine.db"; version="3.13.0"; sha256="06692b1n0lzhg0biixipsnwx33w9y8wkc7pc5q1lkjfzbmd2inml"; depends=[AnnotationDbi org_Bt_eg_db]; }; - bovine_db0 = derive2 { name="bovine.db0"; version="3.17.0"; sha256="015xahvplj7jk6fky1pm5f5ywc01d15r8cvipckfgsi9zspfy492"; depends=[AnnotationDbi]; }; + bovine_db0 = derive2 { name="bovine.db0"; version="3.18.0"; sha256="1s95x4hrv6r1mlsls2yfwbw1mn0jpqg7ancfcwc22p9pi962jjf8"; depends=[AnnotationDbi]; }; bovinecdf = derive2 { name="bovinecdf"; version="2.18.0"; sha256="13mf0yy0dypkm5n2ghl04xm6ayb9bn9qijqhgynksghi7s2k34mb"; depends=[AnnotationDbi]; }; bovineprobe = derive2 { name="bovineprobe"; version="2.18.0"; sha256="0i4afa5dksnir2nfrfh2cynjm59sm6vfaqa9wyag8cxg7c2nlm1i"; depends=[AnnotationDbi]; }; bsubtiliscdf = derive2 { name="bsubtiliscdf"; version="2.18.0"; sha256="1rihrjim37b49rhqr4nxga8sp67qri9xqlqc141mhbngh6cw3iyl"; depends=[AnnotationDbi]; }; bsubtilisprobe = derive2 { name="bsubtilisprobe"; version="2.18.0"; sha256="0k99hvgaswn96x4yanvr9cy8bdy69sd5q7yp6dj9synxj7s1fcw9"; depends=[AnnotationDbi]; }; cMAP = derive2 { name="cMAP"; version="1.15.1"; sha256="0pzizm27rgcaic7wsh52z30v1jwarmz4cwh1mksbygp63k54mwiv"; depends=[]; }; + cadd_v1_6_hg19 = derive2 { name="cadd.v1.6.hg19"; version="3.18.1"; sha256="1g8pk1bmq2p6a7r1skfs54a2b8106znasympyz3dq3vahm5ia0dq"; depends=[AnnotationHub GenomicScores]; }; + cadd_v1_6_hg38 = derive2 { name="cadd.v1.6.hg38"; version="3.18.1"; sha256="0088wv3a082ircmgpx23822bvjwqd5jdvilkgvhaypksbnbdkq68"; depends=[AnnotationHub GenomicScores]; }; canine_db = derive2 { name="canine.db"; version="3.13.0"; sha256="1x1mlh0p6r2l5kclarqwgiw9y64xc8jhp6252hhpl9bpnn638n3s"; depends=[AnnotationDbi org_Cf_eg_db]; }; - canine_db0 = derive2 { name="canine.db0"; version="3.17.0"; sha256="1z3ynhfp0kdi2r38szzlsj5g7zmay4zsvpgcl9hzqfqyhvhdp396"; depends=[AnnotationDbi]; }; + canine_db0 = derive2 { name="canine.db0"; version="3.18.0"; sha256="1s88nj0ysvb7dwvxwkshy9w1a8qvaq3bkxki974zhhh42ssdxm2q"; depends=[AnnotationDbi]; }; canine2_db = derive2 { name="canine2.db"; version="3.13.0"; sha256="1xzz0vivdypwl6kaq2ba02jkpxw0r9r98297ilksdh8m71f244si"; depends=[AnnotationDbi org_Cf_eg_db]; }; canine2cdf = derive2 { name="canine2cdf"; version="2.18.0"; sha256="077cmmnhjdk0vxjzm1kqf3q5kgx6chwkm59dr4s5dy019rqb6sqr"; depends=[AnnotationDbi]; }; canine2probe = derive2 { name="canine2probe"; version="2.18.0"; sha256="1l849a1dqy4kpcsxs0lvb48ag81i0f0ys0w4757rw4kp8ry59z4b"; depends=[AnnotationDbi]; }; @@ -305,10 +312,10 @@ in with self; { celeganscdf = derive2 { name="celeganscdf"; version="2.18.0"; sha256="0a6w0a48azg0i21j3aqb7fnxck3ff9w3gsi89bnlfh0zx6pknx7p"; depends=[AnnotationDbi]; }; celegansprobe = derive2 { name="celegansprobe"; version="2.18.0"; sha256="05k7si3f8pzkyb8jv0r2vkavbrqxsn4nawl92gcphfsylrwcddqb"; depends=[AnnotationDbi]; }; chicken_db = derive2 { name="chicken.db"; version="3.13.0"; sha256="0szb7sgassw10kzm8iz8h3fdbxm6v0kz95yb3a9icj2chi5d1m2i"; depends=[AnnotationDbi org_Gg_eg_db]; }; - chicken_db0 = derive2 { name="chicken.db0"; version="3.17.0"; sha256="1rh1qw85awkm3654f10dqkzsznncrjc99fr1qgx1pr0s7c4f1dcv"; depends=[AnnotationDbi]; }; + chicken_db0 = derive2 { name="chicken.db0"; version="3.18.0"; sha256="1b2ypbjxmm6dg5dagc9cka9p1c9n6b9rjlw1ivcakbnpx7ipwkl2"; depends=[AnnotationDbi]; }; chickencdf = derive2 { name="chickencdf"; version="2.18.0"; sha256="09hhim5s9xj7n2b5rhn1svf5qly2mn0rr2v2ls25hfzyrqcbxlz1"; depends=[AnnotationDbi]; }; chickenprobe = derive2 { name="chickenprobe"; version="2.18.0"; sha256="1fdsiwfyg7fwslrr7xs3gny7sw24bzg5k1fvlyzb1477sgj0pid3"; depends=[AnnotationDbi]; }; - chimp_db0 = derive2 { name="chimp.db0"; version="3.17.0"; sha256="1xbi42kpnw57qzkhqnnispmr3pnzk86fi7plxq25pxsqygrlzim3"; depends=[AnnotationDbi]; }; + chimp_db0 = derive2 { name="chimp.db0"; version="3.18.0"; sha256="1y5yi53hld1q3zi3z25zg68mb76nbh09yikn4x14q5rk2imjg9gm"; depends=[AnnotationDbi]; }; chromhmmData = derive2 { name="chromhmmData"; version="0.99.2"; sha256="13g6x7lzmkz9qv7yr6ps8gsgilgr048lc7y0y7xsfa9ws3n08fzj"; depends=[]; }; citruscdf = derive2 { name="citruscdf"; version="2.18.0"; sha256="1326mj1xf3k4v5iyyn46whx24qfng0x3cv6rvckdr1ycc1v887dn"; depends=[AnnotationDbi]; }; citrusprobe = derive2 { name="citrusprobe"; version="2.18.0"; sha256="0bf1wic136cxwgs4j13wsyqasnyvr0jw1hzg6qizndmy7g8hrb87"; depends=[AnnotationDbi]; }; @@ -332,16 +339,16 @@ in with self; { ecoli2_db = derive2 { name="ecoli2.db"; version="3.13.0"; sha256="1i2arr26hch7lmx2bixzy4l0zaa0gynah4dfwa98cvb24ahqqj9f"; depends=[AnnotationDbi org_EcK12_eg_db]; }; ecoli2cdf = derive2 { name="ecoli2cdf"; version="2.18.0"; sha256="1rkxrwadq9kg9685z9pg6rgc4bblkx5p3c6snsl4gv2k188dva9r"; depends=[AnnotationDbi]; }; ecoli2probe = derive2 { name="ecoli2probe"; version="2.18.0"; sha256="11q4ka0ncjapahic49xdl9919vm9frrwlqgj101krgkg262lfm8n"; depends=[AnnotationDbi]; }; - ecoliK12_db0 = derive2 { name="ecoliK12.db0"; version="3.17.0"; sha256="1vh7c9kn4fmbz2l4fz32xk9xs61kv6xr6abwwzkf1mvnjkjgcy2q"; depends=[AnnotationDbi]; }; - ecoliSakai_db0 = derive2 { name="ecoliSakai.db0"; version="3.17.0"; sha256="12sn7ssxgjzsfq4w0k62f0fh0xyv8ismxip9g05qvqz39r2j4pyj"; depends=[AnnotationDbi]; }; + ecoliK12_db0 = derive2 { name="ecoliK12.db0"; version="3.18.0"; sha256="1x0jpi1j5nxvzirrjafg9w71glsshdbw98zrw1zzbp7gxrwxilpn"; depends=[AnnotationDbi]; }; + ecoliSakai_db0 = derive2 { name="ecoliSakai.db0"; version="3.18.0"; sha256="0khajmjawf0gs7bi0m4pnzl1m7p76wdybv9h3fd3p1qjv5dyifwz"; depends=[AnnotationDbi]; }; ecoliasv2cdf = derive2 { name="ecoliasv2cdf"; version="2.18.0"; sha256="16i6has9qgmzakcy24racc1h9j331wndv5c87qp5r1zrai61zyav"; depends=[AnnotationDbi]; }; ecoliasv2probe = derive2 { name="ecoliasv2probe"; version="2.18.0"; sha256="1hfrnal170cdigc2fmnynb75jjsiq77p4x6ws9gah558hvx87nk3"; depends=[AnnotationDbi]; }; ecolicdf = derive2 { name="ecolicdf"; version="2.18.0"; sha256="18g5prjykn356k35m131ifn128k5mhij2x26balqav0azigzjqsn"; depends=[AnnotationDbi]; }; ecoliprobe = derive2 { name="ecoliprobe"; version="2.18.0"; sha256="17g5zxfzsak7a0w51irc0w1w2i5ngdkx9db6rhv1fyp8mfjgaphd"; depends=[AnnotationDbi]; }; excluderanges = derive2 { name="excluderanges"; version="0.99.8"; sha256="19pdwlhqlz420yss371bsqhkx8c7wxr0sv4wsycnc0mlplwq4bsf"; depends=[GenomicRanges]; }; fitCons_UCSC_hg19 = derive2 { name="fitCons.UCSC.hg19"; version="3.7.1"; sha256="19isa4x8js0pdb4k8a11bw3bzmzv6jc4jphzrvav7piqkvrgykzx"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; - fly_db0 = derive2 { name="fly.db0"; version="3.17.0"; sha256="0xsrzgp7ifi91hhfdq88k7jzamkhpyf8c3mxk0nfn9rqaam9dyr4"; depends=[AnnotationDbi]; }; - geneplast_data = derive2 { name="geneplast.data"; version="0.99.7"; sha256="1br68rvn6rc5fg2lpa5drgdzk809ym58i2gzgdsjgyzb4rl0xf2y"; depends=[ape BiocFileCache dplyr geneplast igraph purrr readr tibble treeio]; }; + fly_db0 = derive2 { name="fly.db0"; version="3.18.0"; sha256="1pksr9jwdd5izf2yc7fb935pic84nvlxa458h0da9lryglc0w5rg"; depends=[AnnotationDbi]; }; + geneplast_data = derive2 { name="geneplast.data"; version="0.99.8"; sha256="1dd7jbgr1binab11npc4qk6caa4n3hzcfdjbsi56f0xic73f8w1b"; depends=[ape BiocFileCache dplyr geneplast igraph purrr readr tibble treeio]; }; geneplast_data_string_v91 = derive2 { name="geneplast.data.string.v91"; version="0.99.6"; sha256="0mc26d0sgmpmfmqsqinqv5k6vhg0hlc8hsjkcnvf369yav224nq1"; depends=[]; }; genomewidesnp5Crlmm = derive2 { name="genomewidesnp5Crlmm"; version="1.0.6"; sha256="06dmwnjy3gb53y6nr02dmp22qzfl5d63wppazrabcqbzwimhnvp8"; depends=[]; }; genomewidesnp6Crlmm = derive2 { name="genomewidesnp6Crlmm"; version="1.0.7"; sha256="16qcxa32fmbdcv5dck0grsnqyfcqql7wpxa1l6andv9hrvabv2jx"; depends=[]; }; @@ -473,7 +480,7 @@ in with self; { hugene20sttranscriptcluster_db = derive2 { name="hugene20sttranscriptcluster.db"; version="8.8.0"; sha256="00fjhz7gac0rssn3kplag68vfx7gimjrm4mc7z516bs013rppgsz"; depends=[AnnotationDbi org_Hs_eg_db]; }; hugene21stprobeset_db = derive2 { name="hugene21stprobeset.db"; version="8.8.0"; sha256="0s4zl9lv5w3fkb9axhz9siliz73brwarw8a7cam1p9b2kmdrdqs0"; depends=[AnnotationDbi org_Hs_eg_db]; }; hugene21sttranscriptcluster_db = derive2 { name="hugene21sttranscriptcluster.db"; version="8.8.0"; sha256="1g7yfva96vhkdvcvsjwsj7sy8q6kczd5rmcwrwjc73v9qi4ywgal"; depends=[AnnotationDbi org_Hs_eg_db]; }; - human_db0 = derive2 { name="human.db0"; version="3.17.0"; sha256="1gzbb6z53sgd682rjr3z2n5k6pdx1zpyxhmy1s9247dx6pqc7say"; depends=[AnnotationDbi]; }; + human_db0 = derive2 { name="human.db0"; version="3.18.0"; sha256="0il4v5r03976qvfd4gq8wdgrp060c1byc3v6wx6yxcxk1wvp81zf"; depends=[AnnotationDbi]; }; human1mduov3bCrlmm = derive2 { name="human1mduov3bCrlmm"; version="1.0.4"; sha256="1p7qpzk6svafgdafljhh4k0z7pcs78qmwwfd80r0a1yhkssmp0v9"; depends=[]; }; human1mv1cCrlmm = derive2 { name="human1mv1cCrlmm"; version="1.0.3"; sha256="1qlph3qrjv52ddzlj8pwa93zzh70x4mbdrdr7q9pan427lpck9gx"; depends=[]; }; human370quadv3cCrlmm = derive2 { name="human370quadv3cCrlmm"; version="1.0.3"; sha256="1chjx9vsmqz2whslw1l7jn7nfn7zx6pcjfmqqm9mh81i74rzrdik"; depends=[]; }; @@ -511,7 +518,7 @@ in with self; { m20kcod_db = derive2 { name="m20kcod.db"; version="3.4.0"; sha256="1p2sm5j4b50iqzwcb984qrh74c3hf6yml7b8mvxlhhhvxz4iy1np"; depends=[AnnotationDbi org_Mm_eg_db]; }; maizecdf = derive2 { name="maizecdf"; version="2.18.0"; sha256="0yfz5gjhsq4wz6j63s1b1hxjz03gsmrlfs2cdc8smq6azp3zdid4"; depends=[AnnotationDbi]; }; maizeprobe = derive2 { name="maizeprobe"; version="2.18.0"; sha256="01h5dv5i0zaqlphkii9ipxy9wswv1srgprrpr5vmi01c9d98qsk0"; depends=[AnnotationDbi]; }; - malaria_db0 = derive2 { name="malaria.db0"; version="3.17.0"; sha256="1mppsx7h8kvizfaz9gq37c483cpf4aqcvr21r8296ra521q7527s"; depends=[AnnotationDbi]; }; + malaria_db0 = derive2 { name="malaria.db0"; version="3.18.0"; sha256="1zp2j7vbws2a56xkngfl248xskpj5r58q7sxx6xjipdjk8n13vf3"; depends=[AnnotationDbi]; }; medicagocdf = derive2 { name="medicagocdf"; version="2.18.0"; sha256="1clz679cc887x98c6jk93cphijkbg5r2nd9idrj5901yvh6p9n5q"; depends=[AnnotationDbi]; }; medicagoprobe = derive2 { name="medicagoprobe"; version="2.18.0"; sha256="0w6j1pfkvb3npc8srpjifq2ywnqxhc9q090jqzmkx22x36cw9cl5"; depends=[AnnotationDbi]; }; metaboliteIDmapping = derive2 { name="metaboliteIDmapping"; version="1.0.0"; sha256="0nflpvla3wn8i2gaja5wwjkxk0jich95f5ws3rnhh2a6rx3xi3ql"; depends=[AnnotationHub]; }; @@ -566,7 +573,7 @@ in with self; { mogene20sttranscriptcluster_db = derive2 { name="mogene20sttranscriptcluster.db"; version="8.8.0"; sha256="1bpzpba9aifc7w6qbrh6rnc636k6z1r9gz03sxvc3aa3977p9xag"; depends=[AnnotationDbi org_Mm_eg_db]; }; mogene21stprobeset_db = derive2 { name="mogene21stprobeset.db"; version="8.8.0"; sha256="172bhzqqw5hz76bw8vqwx2qpw4f6rwbcm6savmkxmmhzb2nq60z5"; depends=[AnnotationDbi org_Mm_eg_db]; }; mogene21sttranscriptcluster_db = derive2 { name="mogene21sttranscriptcluster.db"; version="8.8.0"; sha256="02g2n5nkxi9lqw9h7sbkblk99zd57lkrldqb1fmi9zww59qwagrv"; depends=[AnnotationDbi org_Mm_eg_db]; }; - mouse_db0 = derive2 { name="mouse.db0"; version="3.17.0"; sha256="05q8x1iq2a3d8591b00vf5m1394mywl9k5wg58xyj9vznf69j4jg"; depends=[AnnotationDbi]; }; + mouse_db0 = derive2 { name="mouse.db0"; version="3.18.0"; sha256="092rjbkrqbkg1997vb4zpyjldv8c541kkx7q95pdpk5qx5aapwqy"; depends=[AnnotationDbi]; }; mouse4302_db = derive2 { name="mouse4302.db"; version="3.13.0"; sha256="0rf22kfj6y96ap0gcwq3mnpv6fj0yax37gf51sfi0wkmp95k7rcs"; depends=[AnnotationDbi org_Mm_eg_db]; }; mouse4302cdf = derive2 { name="mouse4302cdf"; version="2.18.0"; sha256="1mpyma4x8zfs2fmmx57xw4cfs2cf9lhw71nc3icl72d7vmwidswc"; depends=[AnnotationDbi]; }; mouse4302frmavecs = derive2 { name="mouse4302frmavecs"; version="1.5.0"; sha256="04clwkfz1gqqwrnqbavkka3hv480w6vi6c4q947qqnhw8j5jjp7s"; depends=[]; }; @@ -604,25 +611,25 @@ in with self; { nugomm1a520177probe = derive2 { name="nugomm1a520177probe"; version="3.4.0"; sha256="1n70k0mhv146983myjgk1cgkr9rmmcpqdv8wpkcr320qcvgf9bn7"; depends=[AnnotationDbi]; }; oligoData = derive2 { name="oligoData"; version="1.8.0"; sha256="1d1yfms3jv2c4s255xnh8yxwijrj35skw3nxds7l46y88lg3qn8y"; depends=[oligo]; }; ontoProcData = derive2 { name="ontoProcData"; version="0.99.9901"; sha256="16wwh539hdm89f1vxqfgjmlbqwadnr4xqap80annsqgfn90mi8rk"; depends=[]; }; - org_Ag_eg_db = derive2 { name="org.Ag.eg.db"; version="3.17.0"; sha256="1gwsd8py3519wx7scrz1xn0wqrdq070b4zj24q0igdklj2695a3w"; depends=[AnnotationDbi]; }; - org_At_tair_db = derive2 { name="org.At.tair.db"; version="3.17.0"; sha256="0nwq9g7w60qh0pyz1vs4yx00wzr4mvrvyqgvs14jgn8xrdxhvc83"; depends=[AnnotationDbi]; }; - org_Bt_eg_db = derive2 { name="org.Bt.eg.db"; version="3.17.0"; sha256="0laa3fc5mi58v6svf53a09608mckckdnfq9ghq5j99xdad67ff64"; depends=[AnnotationDbi]; }; - org_Ce_eg_db = derive2 { name="org.Ce.eg.db"; version="3.17.0"; sha256="0rc230nw2bk4yfldxa82givlrpcwg2ym2pvvdlzxg9jvz1w2m0bh"; depends=[AnnotationDbi]; }; - org_Cf_eg_db = derive2 { name="org.Cf.eg.db"; version="3.17.0"; sha256="15p8cyxcw50d1bmqrwlr1rc7bk90phb1sl8nqbqk8xiwdi0fr661"; depends=[AnnotationDbi]; }; - org_Dm_eg_db = derive2 { name="org.Dm.eg.db"; version="3.17.0"; sha256="0lb6jgccnw02q5znavwj98hghkfzflsckxhsrq64l599d0p0w0qh"; depends=[AnnotationDbi]; }; - org_Dr_eg_db = derive2 { name="org.Dr.eg.db"; version="3.17.0"; sha256="0lf25hyq2rqgvhhm1qank75kd806zrdv3z2cy94p7rrgi1k09pvf"; depends=[AnnotationDbi]; }; - org_EcK12_eg_db = derive2 { name="org.EcK12.eg.db"; version="3.17.0"; sha256="12pv4l72rkpb0bqg251gkdb5z6mr71jm08f9iz3225nb04z5vrfk"; depends=[AnnotationDbi]; }; - org_EcSakai_eg_db = derive2 { name="org.EcSakai.eg.db"; version="3.17.0"; sha256="0kfjc18c7ml679557x3z720bl4k1zspzkkpgc1ddfq8sd1md9kbn"; depends=[AnnotationDbi]; }; - org_Gg_eg_db = derive2 { name="org.Gg.eg.db"; version="3.17.0"; sha256="1kbhz66q57yac7d8iic54nfkiv9z94wfxymj6k0n86x83bv8y3cs"; depends=[AnnotationDbi]; }; - org_Hs_eg_db = derive2 { name="org.Hs.eg.db"; version="3.17.0"; sha256="03hs41g28fndvljbqxqz7dyi8bvznbcnbdnbpqihbljh5fi4wwcl"; depends=[AnnotationDbi]; }; - org_Mm_eg_db = derive2 { name="org.Mm.eg.db"; version="3.17.0"; sha256="1bnm7y265628p6gvjrf2id9n3k0az8ij94xxdjpfnv9s08w7y4ww"; depends=[AnnotationDbi]; }; - org_Mmu_eg_db = derive2 { name="org.Mmu.eg.db"; version="3.17.0"; sha256="00g19aw37y0hcbflhhv4rpjgdvnncs2r8pmas1zrliz6hla8spjf"; depends=[AnnotationDbi]; }; + org_Ag_eg_db = derive2 { name="org.Ag.eg.db"; version="3.18.0"; sha256="1j9bxz8ypv323wdsp0i0jxv70s14rkq40y1b2n665237rxh0zylz"; depends=[AnnotationDbi]; }; + org_At_tair_db = derive2 { name="org.At.tair.db"; version="3.18.0"; sha256="13lrhfyppn5f5jbnnzqwvjfrmg96a687whv2ws2a3h73i18sxfl1"; depends=[AnnotationDbi]; }; + org_Bt_eg_db = derive2 { name="org.Bt.eg.db"; version="3.18.0"; sha256="0fgrpjfrsw837ay9cq3wd6gp6sxvwjc7r9spfs4m89vqs2xb0bfc"; depends=[AnnotationDbi]; }; + org_Ce_eg_db = derive2 { name="org.Ce.eg.db"; version="3.18.0"; sha256="1fsbrbby6ka2xdsbp8b10nid99w6lkvb7pyn8gv3dsn8p9p6mc5q"; depends=[AnnotationDbi]; }; + org_Cf_eg_db = derive2 { name="org.Cf.eg.db"; version="3.18.0"; sha256="0cfj8cg85vgdz7skpvqkbp7a371w95jywwsjvb5am2wb5hzsnwnp"; depends=[AnnotationDbi]; }; + org_Dm_eg_db = derive2 { name="org.Dm.eg.db"; version="3.18.0"; sha256="1n0rwynw3nl4js104295kff0jk8jwymjk8imm9di6dy6b9s3qsa6"; depends=[AnnotationDbi]; }; + org_Dr_eg_db = derive2 { name="org.Dr.eg.db"; version="3.18.0"; sha256="1kk5jgbzcqhgwf5p4mpxswqhr9rkirm3fb7maflk61zcn6fs56zc"; depends=[AnnotationDbi]; }; + org_EcK12_eg_db = derive2 { name="org.EcK12.eg.db"; version="3.18.0"; sha256="12lqv06n49lwczv5l4h5h6lbfbcqyg9j4csffcdx495scmhc06mc"; depends=[AnnotationDbi]; }; + org_EcSakai_eg_db = derive2 { name="org.EcSakai.eg.db"; version="3.18.0"; sha256="03w6566b3gljs2sjz4ywjkvgr3s33n33877vvmgwapmdwvy6kfs6"; depends=[AnnotationDbi]; }; + org_Gg_eg_db = derive2 { name="org.Gg.eg.db"; version="3.18.0"; sha256="035pxjcyyhv1nd177vp3kmjjfakzdyf0xmadqqih69almkrvd9yb"; depends=[AnnotationDbi]; }; + org_Hs_eg_db = derive2 { name="org.Hs.eg.db"; version="3.18.0"; sha256="1jn556ql6xknfd34qz4bqh6bgc9rccmz6pk41p7ivlzlslz7bp21"; depends=[AnnotationDbi]; }; + org_Mm_eg_db = derive2 { name="org.Mm.eg.db"; version="3.18.0"; sha256="0i35dfllh8wf7b61ajf33gvclzg3znyx3cgp30vs3hm8ys3nras1"; depends=[AnnotationDbi]; }; + org_Mmu_eg_db = derive2 { name="org.Mmu.eg.db"; version="3.18.0"; sha256="1qj06dybpqv17vkmd2bk7x3f20a34p4ra054gywbp9klbgmrk60h"; depends=[AnnotationDbi]; }; org_Mxanthus_db = derive2 { name="org.Mxanthus.db"; version="1.0.27"; sha256="1jqwsdjz1d8fwqhq26lavb2kq739ddlb8khsh4b096vhnwv3dxg5"; depends=[AnnotationDbi AnnotationHub BiocFileCache BiocStyle]; }; - org_Pt_eg_db = derive2 { name="org.Pt.eg.db"; version="3.17.0"; sha256="1ps1xqdlhn7f4n9xiy9bqsfs8v23gbslk4l22lbplmy025wnhbwa"; depends=[AnnotationDbi]; }; - org_Rn_eg_db = derive2 { name="org.Rn.eg.db"; version="3.17.0"; sha256="0vrf427jn8idf8s8bba7yr8g4970da5rgqp1k17np6nkc4hqqisw"; depends=[AnnotationDbi]; }; - org_Sc_sgd_db = derive2 { name="org.Sc.sgd.db"; version="3.17.0"; sha256="1anxk5sgzgkdk4n1c7gjyzy56wa2bkifghs9m1mh82l95kyvk2ig"; depends=[AnnotationDbi]; }; - org_Ss_eg_db = derive2 { name="org.Ss.eg.db"; version="3.17.0"; sha256="0bjg95xq3r00zs0rlbwifc52mjb6zkfyc52m7phb7bwi44pdszxj"; depends=[AnnotationDbi]; }; - org_Xl_eg_db = derive2 { name="org.Xl.eg.db"; version="3.17.0"; sha256="1bnaddxghz130n53nnhbda9pwi1dhsnam7wc95fldzajyzxa1fsb"; depends=[AnnotationDbi]; }; + org_Pt_eg_db = derive2 { name="org.Pt.eg.db"; version="3.18.0"; sha256="0fv0l1fj4d5fza936gx187z3b3yd8cjs0hlb3f9vrsv1zadr3yyf"; depends=[AnnotationDbi]; }; + org_Rn_eg_db = derive2 { name="org.Rn.eg.db"; version="3.18.0"; sha256="1z9wsb7f67mggcsv27zrn50j5c9a3hxc4dygaj2nbma23zxbyjc3"; depends=[AnnotationDbi]; }; + org_Sc_sgd_db = derive2 { name="org.Sc.sgd.db"; version="3.18.0"; sha256="15ngfqimrjpn2fxzngj5m3pvqivbq65010qdx33xs32ax48z6p2r"; depends=[AnnotationDbi]; }; + org_Ss_eg_db = derive2 { name="org.Ss.eg.db"; version="3.18.0"; sha256="0jqrwh4h7shsni9zyygyggmwg89jsc90r7y0gali29yy8wa38h0q"; depends=[AnnotationDbi]; }; + org_Xl_eg_db = derive2 { name="org.Xl.eg.db"; version="3.18.0"; sha256="01xr4cpjzdd1v0xw8dbmcjhmcwhi8b3vjhmgsx77c969w9sa0igr"; depends=[AnnotationDbi]; }; paeg1acdf = derive2 { name="paeg1acdf"; version="2.18.0"; sha256="127pgxxp5wp3hgmafbzdzsk4gqnllq1m1gcsfyzkvpkvmbn4aa9n"; depends=[AnnotationDbi]; }; paeg1aprobe = derive2 { name="paeg1aprobe"; version="2.18.0"; sha256="0hbyd402wf9nzy2g93nhnf2zsi9jvhgfk0llxlyfk0kqxs0y4byy"; depends=[AnnotationDbi]; }; pd_081229_hg18_promoter_medip_hx1 = derive2 { name="pd.081229.hg18.promoter.medip.hx1"; version="0.99.4"; sha256="1h4925dmw0vfsnhllg55gswq3sxfmx9rcjzifdvgs9y27399psrr"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; }; @@ -802,7 +809,7 @@ in with self; { phastCons35way_UCSC_mm39 = derive2 { name="phastCons35way.UCSC.mm39"; version="3.16.0"; sha256="0lniqakqxja8inq3gn168w1xja1m2kbmww0cw971smsnddypmig7"; depends=[AnnotationHub GenomicScores]; }; phastCons7way_UCSC_hg38 = derive2 { name="phastCons7way.UCSC.hg38"; version="3.7.1"; sha256="105isdrb3nsy30wd8yy9vrrv8b7c8izc11xqqixg6rcriacd0rl0"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; phyloP35way_UCSC_mm39 = derive2 { name="phyloP35way.UCSC.mm39"; version="3.16.0"; sha256="1n0iywfs23dhc54mapirvaqcbx38zjf8lknbsz80p5lxp24n2lf9"; depends=[AnnotationHub GenomicScores]; }; - pig_db0 = derive2 { name="pig.db0"; version="3.17.0"; sha256="02ngp50g6xrm8vkxrha2bcd6pc9hhcj7zg1bbn4ixd7f3fs81h3y"; depends=[AnnotationDbi]; }; + pig_db0 = derive2 { name="pig.db0"; version="3.18.0"; sha256="05lddwcf205gid4ppq9ch5bp7cjdm36c3hfsdm2jddh4a7nky4vz"; depends=[AnnotationDbi]; }; plasmodiumanophelescdf = derive2 { name="plasmodiumanophelescdf"; version="2.18.0"; sha256="1vs36091djinn3g6rjhmy9xfdyi58365zbcjc9mf50adnp2i5fq9"; depends=[AnnotationDbi]; }; plasmodiumanophelesprobe = derive2 { name="plasmodiumanophelesprobe"; version="2.18.0"; sha256="03hfq51nrpmx8ihc48jiih6bk99irrgal9x7i7mgcv8xd508gcsy"; depends=[AnnotationDbi]; }; poplarcdf = derive2 { name="poplarcdf"; version="2.18.0"; sha256="0j28czs936j2wgwp63qbwl1mjcflcrx7ir88jzxkkw7411ch1gl1"; depends=[AnnotationDbi]; }; @@ -832,7 +839,7 @@ in with self; { ragene20sttranscriptcluster_db = derive2 { name="ragene20sttranscriptcluster.db"; version="8.8.0"; sha256="1bi4wy0sbhsyavxwshxvf3iqmyz26q7y2vqp1h3rjshsjdmhfd0h"; depends=[AnnotationDbi org_Rn_eg_db]; }; ragene21stprobeset_db = derive2 { name="ragene21stprobeset.db"; version="8.8.0"; sha256="1m0hd0nlav9dhqzvs5drl8q3llx2wjxdfvb24fmjnba4h769ns7k"; depends=[AnnotationDbi org_Rn_eg_db]; }; ragene21sttranscriptcluster_db = derive2 { name="ragene21sttranscriptcluster.db"; version="8.8.0"; sha256="14hp03pizq7kprwk26s9w6s27zzbs2kk50qhjbiwic1xbrl0dp8a"; depends=[AnnotationDbi org_Rn_eg_db]; }; - rat_db0 = derive2 { name="rat.db0"; version="3.17.0"; sha256="1znr63swsy2xi60p98g4psrrkj6nvc5a6538w036ccbm745i06nb"; depends=[AnnotationDbi]; }; + rat_db0 = derive2 { name="rat.db0"; version="3.18.0"; sha256="1g02gq0wwb1f7hmqcpd4ad59xn295zqg1hdzixn20wgkan5yd0ac"; depends=[AnnotationDbi]; }; rat2302_db = derive2 { name="rat2302.db"; version="3.13.0"; sha256="1k2qm1rpq3xkj52m3n629r4qcqi2azdssb2i5shj9jdaqkmr43qc"; depends=[AnnotationDbi org_Rn_eg_db]; }; rat2302cdf = derive2 { name="rat2302cdf"; version="2.18.0"; sha256="1748rc6yypd7y8wgr1qg632pcsxx0fkxjz6b3z4fhblgdllhy9wk"; depends=[AnnotationDbi]; }; rat2302frmavecs = derive2 { name="rat2302frmavecs"; version="0.99.11"; sha256="0qy5hf86lrkn20yg6d46kcw9fjc0qhsbzbyavaj1v2zl34xvr1ii"; depends=[affy frma]; }; @@ -840,7 +847,7 @@ in with self; { ratCHRLOC = derive2 { name="ratCHRLOC"; version="2.1.6"; sha256="0mgk6lwvvdwjzjh4r1q1q6nfnx4vqx9iy6gmbrb9f31jf30hqnsb"; depends=[]; }; rattoxfxcdf = derive2 { name="rattoxfxcdf"; version="2.18.0"; sha256="0q84lfaxnnj2zbm5q8xswa1md15fjj4i0djnqr835ixzn7px4yqn"; depends=[AnnotationDbi]; }; rattoxfxprobe = derive2 { name="rattoxfxprobe"; version="2.18.0"; sha256="1kp159553rkcn9yh6x3yph3yjz2ja21wi9j5ax03qnhwlsl1x8ik"; depends=[AnnotationDbi]; }; - reactome_db = derive2 { name="reactome.db"; version="1.84.0"; sha256="0klg4p0n2689fd2ly8i3c7qi353fzlma44hjvarydcxys38k9biy"; depends=[AnnotationDbi]; }; + reactome_db = derive2 { name="reactome.db"; version="1.86.2"; sha256="02p8ihds0hpcfj5mib0ifql9404svlavfyj36c15jzmbci0rnc8c"; depends=[AnnotationDbi]; }; rgu34a_db = derive2 { name="rgu34a.db"; version="3.13.0"; sha256="1nl28gia0zh8xkfv8llxiysxk1k1gm6cs2wvl0n1xqhnr0rhla76"; depends=[AnnotationDbi org_Rn_eg_db]; }; rgu34acdf = derive2 { name="rgu34acdf"; version="2.18.0"; sha256="08z9f16xp1m2mwl9vlmbffxl4zyyl8cgzf6wp66rrm32lvl0nbwq"; depends=[AnnotationDbi]; }; rgu34aprobe = derive2 { name="rgu34aprobe"; version="2.18.0"; sha256="1gjxyq9128jgv3ic386f84rajgf3wz7yi2dja80y0ff4m0a48dlh"; depends=[AnnotationDbi]; }; @@ -854,7 +861,7 @@ in with self; { rgug4105a_db = derive2 { name="rgug4105a.db"; version="3.2.3"; sha256="0lq8k95qm0q7j65nf16p3f09dn9zs87n3k561wxrgi2lb0pf6j40"; depends=[AnnotationDbi org_Rn_eg_db]; }; rgug4130a_db = derive2 { name="rgug4130a.db"; version="3.2.3"; sha256="0zlcn9spw23bj3px9z1l2f5afn09zbr6rv0nbd2h6dd12wrvy1zk"; depends=[AnnotationDbi org_Rn_eg_db]; }; rgug4131a_db = derive2 { name="rgug4131a.db"; version="3.2.3"; sha256="1r272jf9cflf1yf4bznp4d59h7bd7adh1i3rf890h5ffc0xzf5cq"; depends=[AnnotationDbi org_Rn_eg_db]; }; - rhesus_db0 = derive2 { name="rhesus.db0"; version="3.17.0"; sha256="1nmf08xd6nn2cpxmazvxws42ys5y5gacmpx7lpf1y69nvnppaqvp"; depends=[AnnotationDbi]; }; + rhesus_db0 = derive2 { name="rhesus.db0"; version="3.18.0"; sha256="08l0srvyac33z7ly90pscfh46ms4yfq2pqw502px095qpk0lfvz1"; depends=[AnnotationDbi]; }; rhesuscdf = derive2 { name="rhesuscdf"; version="2.18.0"; sha256="0q2alkxm80wkzaf0q80df27q30qkswybavz05x6ywsihbs9h0nb8"; depends=[AnnotationDbi]; }; rhesusprobe = derive2 { name="rhesusprobe"; version="2.18.0"; sha256="0fd8pvwvpcmx41k80nbccjxllh39fvjf7l9dr8facisl1x7gsfil"; depends=[AnnotationDbi]; }; ri16cod_db = derive2 { name="ri16cod.db"; version="3.4.0"; sha256="1xz533vxjdyxx1wkks0kgk6b90sxs44iqcsvyds0xcm573bx8c6q"; depends=[AnnotationDbi org_Rn_eg_db]; }; @@ -877,7 +884,7 @@ in with self; { sugarcanecdf = derive2 { name="sugarcanecdf"; version="2.18.0"; sha256="0wghc6wr7iwkql63m3wibjjdcdpqd53z0g5rxdh553sjb0ca2n7z"; depends=[AnnotationDbi]; }; sugarcaneprobe = derive2 { name="sugarcaneprobe"; version="2.18.0"; sha256="17zrydd8xd7m61bp750xlpcak0m3zgl0mvknz9s7mv2a35kp02ih"; depends=[AnnotationDbi]; }; synaptome_data = derive2 { name="synaptome.data"; version="0.99.6"; sha256="00cqgx06wysz0qyicwnxlc8hpqkj5rwqlyfzsvy7agvcjjkarwg5"; depends=[AnnotationHub]; }; - synaptome_db = derive2 { name="synaptome.db"; version="0.99.12"; sha256="1f63s54kn78bxrhp1aidghaicymd39p3bgpnxkz9lkby50xcfwyl"; depends=[AnnotationHub DBI dbplyr dplyr igraph Rdpack RSQLite synaptome_data]; }; + synaptome_db = derive2 { name="synaptome.db"; version="0.99.15"; sha256="111rg62l8f0k3m0fq8g63lg15agk9bkfcx5z990157cxs0rq07h3"; depends=[AnnotationHub DBI dbplyr dplyr igraph Rdpack RSQLite synaptome_data]; }; targetscan_Hs_eg_db = derive2 { name="targetscan.Hs.eg.db"; version="0.6.1"; sha256="1p14jyhn1d2m6kww9vsb96263g8crnrff7qgyiz46pp9ww8mvxf4"; depends=[AnnotationDbi]; }; targetscan_Mm_eg_db = derive2 { name="targetscan.Mm.eg.db"; version="0.6.1"; sha256="0ad6vxpwn9x82qcrpwcy1lwg0q3ik4vabxn01k6gwmbpvydz9cf5"; depends=[AnnotationDbi]; }; test1cdf = derive2 { name="test1cdf"; version="2.18.0"; sha256="0nmkrp4b2p09pg8ndcnfv5y7w94xah6fa5pff60dp1s2s8dcgcr4"; depends=[AnnotationDbi]; }; @@ -894,8 +901,8 @@ in with self; { vitisviniferaprobe = derive2 { name="vitisviniferaprobe"; version="2.18.0"; sha256="1ggz1s37dwvrkhj4vx2civyhap7bgqsshy33lk14z4fjsayfi39a"; depends=[AnnotationDbi]; }; wheatcdf = derive2 { name="wheatcdf"; version="2.18.0"; sha256="1gmbrdilqvm54h6nkb1cm01ki8aipiywd4qj8gpwlm2hqrimr8kr"; depends=[AnnotationDbi]; }; wheatprobe = derive2 { name="wheatprobe"; version="2.18.0"; sha256="1fifi3pvzdrg356idwz0kx7qlf5mssdxlyvwpn3cjgw0z7n7cnw8"; depends=[AnnotationDbi]; }; - worm_db0 = derive2 { name="worm.db0"; version="3.17.0"; sha256="1v54c12lw109afmih9gzm7zdcyd4z18g4zdk1ixy1mbh8ff11w5q"; depends=[AnnotationDbi]; }; - xenopus_db0 = derive2 { name="xenopus.db0"; version="3.17.0"; sha256="0cf8rvvjzm3cd2wrkz6zksqm111yq2li8l9c9p1q566fphvjab34"; depends=[AnnotationDbi]; }; + worm_db0 = derive2 { name="worm.db0"; version="3.18.0"; sha256="1kiv5a7mxak12m58c7p9m10k4ip6v63ycgj9mfawa8i70cp1dvap"; depends=[AnnotationDbi]; }; + xenopus_db0 = derive2 { name="xenopus.db0"; version="3.18.0"; sha256="1dacnx0bknhgdlaljm9r54dxxbw7vi6pgxhl2dmprkl9k02cc2q6"; depends=[AnnotationDbi]; }; xenopuslaeviscdf = derive2 { name="xenopuslaeviscdf"; version="2.18.0"; sha256="1bcz1hr7gxw6ac4qvw0giph6hfcf5i9b11s274ypq512qc1d32iq"; depends=[AnnotationDbi]; }; xenopuslaevisprobe = derive2 { name="xenopuslaevisprobe"; version="2.18.0"; sha256="0prb14zn2gvgxq8w0y21x1ng51cn3bgjhkppf7zkmnq1xkzvq0pw"; depends=[AnnotationDbi]; }; xlaevis_db = derive2 { name="xlaevis.db"; version="3.2.3"; sha256="0cdi71c8pflb8n4yfxc0wmfi51w6z0dlz7nw5hv0hkx547v79d53"; depends=[AnnotationDbi org_Xl_eg_db]; }; @@ -907,7 +914,7 @@ in with self; { ye6100subbcdf = derive2 { name="ye6100subbcdf"; version="2.18.0"; sha256="1169hv56981b915rlr5w5sn6ppyjd8as7f4k1hbjzadrdrl3glwp"; depends=[AnnotationDbi]; }; ye6100subccdf = derive2 { name="ye6100subccdf"; version="2.18.0"; sha256="0mhr4zd33gfvvivc17k7fb6nvmhq6h3q0xbx2zl09zd6qk09kizm"; depends=[AnnotationDbi]; }; ye6100subdcdf = derive2 { name="ye6100subdcdf"; version="2.18.0"; sha256="11b1fflgc34lrj4yf1p7way5n83cm9c7znsbxpzlwddwyy8qib30"; depends=[AnnotationDbi]; }; - yeast_db0 = derive2 { name="yeast.db0"; version="3.17.0"; sha256="07rv1fbvj3mmkngmhv258nqg9kba2y8drgkwnzqka6x0m7fbgk3r"; depends=[AnnotationDbi]; }; + yeast_db0 = derive2 { name="yeast.db0"; version="3.18.0"; sha256="1lrni3i2qljkrvpm63rrwhk52m2lr4ci82lxaczbk7spk8yr7mvy"; depends=[AnnotationDbi]; }; yeast2_db = derive2 { name="yeast2.db"; version="3.13.0"; sha256="0aqbs3p6f3sc6nyggyk7gvg191b551rwq20009fnk0li50dg1ps6"; depends=[AnnotationDbi org_Sc_sgd_db]; }; yeast2cdf = derive2 { name="yeast2cdf"; version="2.18.0"; sha256="0c68val9x8bfnv4xx0vag9dxwsx5q8dzbj0dpha3nshh12jw48w9"; depends=[AnnotationDbi]; }; yeast2probe = derive2 { name="yeast2probe"; version="2.18.0"; sha256="125nif693qcmxc0nnnz917f9avggcdr8g9rfvx2qdc54a2l7vdb7"; depends=[AnnotationDbi]; }; @@ -916,7 +923,7 @@ in with self; { ygs98frmavecs = derive2 { name="ygs98frmavecs"; version="1.3.0"; sha256="1xrm1209xnknwvad7nvg1a0mbxz15z12yd4x5bia3cq03zcmzf9m"; depends=[]; }; ygs98probe = derive2 { name="ygs98probe"; version="2.18.0"; sha256="0awf6z4j2vb2jk9a9j2r512yd3m31660y68pasa9mp488m270a3q"; depends=[AnnotationDbi]; }; zebrafish_db = derive2 { name="zebrafish.db"; version="3.13.0"; sha256="13a65jxr3r5qjf82h1dr0k9qq20g14canqgqdd11k9gk5h31xhc7"; depends=[AnnotationDbi org_Dr_eg_db]; }; - zebrafish_db0 = derive2 { name="zebrafish.db0"; version="3.17.0"; sha256="0qzywmcmrm7qzxny6icj4y1y4s5ynb169sfmxfy7fqfwnaij6krw"; depends=[AnnotationDbi]; }; + zebrafish_db0 = derive2 { name="zebrafish.db0"; version="3.18.0"; sha256="0qrd1b5l936jf30dnnmmi5fighwg4zmhz62acq6qzi4r7668g6sk"; depends=[AnnotationDbi]; }; zebrafishcdf = derive2 { name="zebrafishcdf"; version="2.18.0"; sha256="0sq1xqhblbilvaiabhqyl9gxdj3jg576vgq8v0cls1zvvx0isrx0"; depends=[AnnotationDbi]; }; zebrafishprobe = derive2 { name="zebrafishprobe"; version="2.18.0"; sha256="1pb8z2rdhq11hq391xyi236scyafbp56kbhhwsnha36yygz5drw0"; depends=[AnnotationDbi]; }; LRBase_Ath_eg_db = derive2 { name="LRBase.Ath.eg.db"; version="2.0.1"; sha256="1f9yp9rfaydzz24bhl795379clcinibi4kavxzzavrvqfvkrgw84"; depends=[LRBaseDbi RSQLite]; broken = true; }; @@ -933,6 +940,7 @@ in with self; { LRBase_Xtr_eg_db = derive2 { name="LRBase.Xtr.eg.db"; version="2.0.1"; sha256="18bk6p405cpws0ynh0q17w5fmriplmamhy1rds5rc6hf05lr2sb8"; depends=[LRBaseDbi RSQLite]; broken = true; }; MafDb_gnomAD_r3_0_GRCh38 = derive2 { name="MafDb.gnomAD.r3.0.GRCh38"; version="3.13.0"; sha256="0f1qjngpshdpdg6i05qh8pmr56x4wvx29ism3vsid099ammnxdca"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; broken = true; }; MafH5_gnomAD_r3_0_GRCh38 = derive2 { name="MafH5.gnomAD.r3.0.GRCh38"; version="3.13.0"; sha256="1hhm0qla0av6fcgrf4wivwfczs7b6a473qswii2axpxq7srbsgaz"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores HDF5Array IRanges rhdf5 S4Vectors]; broken = true; }; + MafH5_gnomAD_v3_1_1_GRCh38 = derive2 { name="MafH5.gnomAD.v3.1.1.GRCh38"; version="3.13.1"; sha256="1hwl1k0h7p6kkzw0v0z177nlbjqlrr9x5nkrils2529g3ysrp3ky"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores HDF5Array IRanges rhdf5 S4Vectors]; broken = true; }; MeSH_AOR_db = derive2 { name="MeSH.AOR.db"; version="1.15.1"; sha256="1d33krs3xs0pa14gm7haiaglnlx5z41m6gx92gg8ckfpblyz49q2"; depends=[MeSHDbi]; broken = true; }; MeSH_Aca_eg_db = derive2 { name="MeSH.Aca.eg.db"; version="1.15.1"; sha256="195hs3x0sfs4s5kry452r0fhnq19ayv82j4dr1394zr104r17kb1"; depends=[MeSHDbi]; broken = true; }; MeSH_Aga_PEST_eg_db = derive2 { name="MeSH.Aga.PEST.eg.db"; version="1.15.1"; sha256="1kyjhnfv3b0jxdali2v1wdqd1zkl9vsf2z9ba6dkhlm1hghsnv63"; depends=[MeSHDbi]; broken = true; }; diff --git a/pkgs/development/r-modules/bioc-experiment-packages.nix b/pkgs/development/r-modules/bioc-experiment-packages.nix index 957c3db261159..446d7c5bcdc4a 100644 --- a/pkgs/development/r-modules/bioc-experiment-packages.nix +++ b/pkgs/development/r-modules/bioc-experiment-packages.nix @@ -4,436 +4,445 @@ # Rscript generate-r-packages.R bioc-experiment >new && mv new bioc-experiment-packages.nix { self, derive }: -let derive2 = derive { biocVersion = "3.17"; }; +let derive2 = derive { biocVersion = "3.18"; }; in with self; { - ALL = derive2 { name="ALL"; version="1.42.0"; sha256="0zjzssk27sjjxji4fk2zdnpffvav6wi2rvl7x7pv8jx2vq2ik5fi"; depends=[Biobase]; }; - ALLMLL = derive2 { name="ALLMLL"; version="1.40.0"; sha256="1vksmxwnzvcfk42i1pa4m714vvvry78fqhyayi3nav7361f2ywf9"; depends=[affy]; }; - ARRmData = derive2 { name="ARRmData"; version="1.36.0"; sha256="1x0xhpgjg92zyh8qw68hhh3lkq1w0r5qgc99bsik6vkbaas7ga0m"; depends=[]; }; - ASICSdata = derive2 { name="ASICSdata"; version="1.20.0"; sha256="159s1hdafllfjykfbg51r3qj6aggq2d44hhvjg0ka89ymmgwr9gz"; depends=[]; }; - Affyhgu133A2Expr = derive2 { name="Affyhgu133A2Expr"; version="1.36.0"; sha256="1iimk7p8sqvd830s0k14qjm8nn8429n8nwnkymc33l04vmrsz4m9"; depends=[]; }; - Affyhgu133Plus2Expr = derive2 { name="Affyhgu133Plus2Expr"; version="1.34.0"; sha256="1sys60fvgxwzvpifdjx905dki1x43al6k5n3jdw1g0ani5dzd8sl"; depends=[]; }; - Affyhgu133aExpr = derive2 { name="Affyhgu133aExpr"; version="1.38.0"; sha256="022zp78s95albpw9mv9dq0lww090pi42mqyafjmfc7ykp1a6jrcv"; depends=[]; }; - AffymetrixDataTestFiles = derive2 { name="AffymetrixDataTestFiles"; version="0.38.0"; sha256="1rzb1wkdsmrx1rfsawyfdfm2ic45mzpck27cl10jc440fm9yl3fj"; depends=[]; }; - Affymoe4302Expr = derive2 { name="Affymoe4302Expr"; version="1.38.0"; sha256="0084p8c6r3ksgyb5fkwxddv2r73qkz6lnd2a7bssyy7x2jxni492"; depends=[]; }; - AmpAffyExample = derive2 { name="AmpAffyExample"; version="1.40.0"; sha256="061z0nbbihp75lr1zs9wadq27y6841y096pvi2qr38q3y0nk8nf1"; depends=[affy]; }; - AneuFinderData = derive2 { name="AneuFinderData"; version="1.28.0"; sha256="1q1y4x7ngfcn4ykl8ffypw7w32jxxiww3a90sn5nyf5vwkagp3bz"; depends=[]; }; - AshkenazimSonChr21 = derive2 { name="AshkenazimSonChr21"; version="1.30.0"; sha256="1ymcc4ld1iq4svvz1kxrwx6cgi7ap15ql0xc57kmfn688jg633xz"; depends=[]; }; - AssessORFData = derive2 { name="AssessORFData"; version="1.18.0"; sha256="15s26z20xgdg9y1wp2wcbq1rlkylw2y35hf565njvgy3kvysh8wr"; depends=[DECIPHER]; }; - BeadArrayUseCases = derive2 { name="BeadArrayUseCases"; version="1.38.0"; sha256="1b7hzv3azxj66j0ak10qv4mmvh558cph0h1vxn2qpv5hqvad3463"; depends=[beadarray GEOquery limma]; }; - BeadSorted_Saliva_EPIC = derive2 { name="BeadSorted.Saliva.EPIC"; version="1.8.0"; sha256="1b4j9gbs36gdrhfadxl3qll6w1phwjdmklxxyv5i85ypkjm9y5ya"; depends=[ExperimentHub minfi]; }; - BioImageDbs = derive2 { name="BioImageDbs"; version="1.8.0"; sha256="13g6km5bbadzjpdsc5biwifj02d4q1f8n2gxfrzgsdxgcs7ml149"; depends=[animation AnnotationHub EBImage einsum ExperimentHub filesstrings magick magrittr markdown rmarkdown]; }; - BioPlex = derive2 { name="BioPlex"; version="1.6.0"; sha256="13az5q1bwyqwv3hm33hv9m8kmy3wkyj80l7wd8iq70zp39ica47q"; depends=[BiocFileCache GenomeInfoDb GenomicRanges GEOquery graph SummarizedExperiment]; }; - BloodCancerMultiOmics2017 = derive2 { name="BloodCancerMultiOmics2017"; version="1.20.0"; sha256="1mrczpgc0byvhz6bg1nrjsrjja3wx6z9rqjm3i89rx0hmbvvgga5"; depends=[beeswarm Biobase DESeq2 devtools dplyr ggdendro ggplot2 glmnet gtable ipflasso RColorBrewer reshape2 scales SummarizedExperiment survival tibble]; }; - CCl4 = derive2 { name="CCl4"; version="1.38.0"; sha256="1w0c7bj4bxkpi2mwjf4v06f2mff50lngjwpgbxdr8blcggwb1d57"; depends=[Biobase limma]; }; - CLL = derive2 { name="CLL"; version="1.40.0"; sha256="1vzv34mnvmb2ml1fpizxcqrh8aha74ahsa17jl2hswq0ax8ci5h9"; depends=[affy Biobase]; }; - CLLmethylation = derive2 { name="CLLmethylation"; version="1.20.0"; sha256="0g216ybjqkw74907n0ljm9nhdh7i0ai5zl1hw4j1ypqy0kh5lxh1"; depends=[ExperimentHub SummarizedExperiment]; }; - COHCAPanno = derive2 { name="COHCAPanno"; version="1.36.0"; sha256="0krfgw9jkwrywl1lq5drmn983xdfy2kv3vdqszzr6ybqw1kz0fxv"; depends=[]; }; - CONFESSdata = derive2 { name="CONFESSdata"; version="1.28.0"; sha256="04qav5yv0027z7nb3axs5rpmcshiybhkfc0kna6svnv8vm3qxkls"; depends=[]; }; - COPDSexualDimorphism_data = derive2 { name="COPDSexualDimorphism.data"; version="1.36.0"; sha256="0vsdswn2qa3yz4n9ii3vqnq33y4j9k71isbb5rqx08z0cd1f1qy2"; depends=[]; }; - COSMIC_67 = derive2 { name="COSMIC.67"; version="1.36.0"; sha256="1vhrf9f2wgp2yxs9g780b4n6m4777f0n3p7kk8pjw5b0580gcq5b"; depends=[GenomicRanges SummarizedExperiment VariantAnnotation]; }; - CRCL18 = derive2 { name="CRCL18"; version="1.20.0"; sha256="0nx6hzbx9717mm1ywa4c2yshzd3p32s0rycv7ka0fjymf0wb61wz"; depends=[Biobase]; }; - CardinalWorkflows = derive2 { name="CardinalWorkflows"; version="1.32.0"; sha256="1cyqb22ajpv12lfxbwma5rdbyr23m0wpzsmia28mn9k060mj9pmr"; depends=[Cardinal]; }; - CellMapperData = derive2 { name="CellMapperData"; version="1.26.0"; sha256="00akrwc9ilnl1j21jmhvhrz0jii6jlkb19pyfj8hr2s1i610w59k"; depends=[CellMapper ExperimentHub]; }; - ChAMPdata = derive2 { name="ChAMPdata"; version="2.32.0"; sha256="05y2ji1h3n4mhj2l0axk8p1dppjhxjil57hvy1rgx63pc2nciysq"; depends=[BiocGenerics GenomicRanges]; }; - ChIC_data = derive2 { name="ChIC.data"; version="1.20.0"; sha256="105kmdbl5k3yzp1nnmk72pdaalas1aykjrb3an8li19fb2p07xli"; depends=[caret genomeIntervals randomForest]; }; - ChIPXpressData = derive2 { name="ChIPXpressData"; version="1.38.0"; sha256="0d1gl855bmyapr00i8xhd50q2zb3f22kipb8yb2nb4qrzwnjakcf"; depends=[bigmemory]; }; - ChIPexoQualExample = derive2 { name="ChIPexoQualExample"; version="1.24.0"; sha256="08b2h7w8hl463znsj2rjijqjnd758zjmycniczzzqrr8rcfdp2sn"; depends=[]; }; - ChimpHumanBrainData = derive2 { name="ChimpHumanBrainData"; version="1.38.0"; sha256="1hgc2a7wsbw5ivdjknv82p3pvznq29lm8g4fdxy6dyr781xghs0w"; depends=[affy hexbin limma qvalue statmod]; }; - CluMSIDdata = derive2 { name="CluMSIDdata"; version="1.16.0"; sha256="0rwrqkyhs9jlmyqbahla7n39hksmq305468yksxnix8jkbigb1l6"; depends=[]; }; - CoSIAdata = derive2 { name="CoSIAdata"; version="1.0.0"; sha256="0mckv22h4x6grg3nr0p4kkmhip050xgnmq2p4d4v3qg237qdvacv"; depends=[ExperimentHub]; }; - ConnectivityMap = derive2 { name="ConnectivityMap"; version="1.36.0"; sha256="0wsmlrsajyhkspvjqqkva5b982q07rmayrd13g0byrxljihcabkq"; depends=[]; }; - CopyNeutralIMA = derive2 { name="CopyNeutralIMA"; version="1.18.0"; sha256="1ljv0q15mbq60ajb5ajhwi100x9mm87wjs9i87wxvbddqbj1sb2x"; depends=[ExperimentHub Rdpack]; }; - CopyhelpeR = derive2 { name="CopyhelpeR"; version="1.32.0"; sha256="1ljzaz87341n3v5xr4p0kljqans64qkpqjnq3cb3z1lq4g7py7l7"; depends=[]; }; - DAPARdata = derive2 { name="DAPARdata"; version="1.30.4"; sha256="002smsicwxahxb2yr3vc0lx99sz3pxh61vvmx31lfzqb1gfkagwr"; depends=[BiocStyle graph MSnbase]; }; - DExMAdata = derive2 { name="DExMAdata"; version="1.8.0"; sha256="0v3wmfa525agshf76y8rmrwv53zz9ych13y6ggw908w902csbc7w"; depends=[Biobase]; }; - DLBCL = derive2 { name="DLBCL"; version="1.40.0"; sha256="0wrjh76q2msbxmp6fwnbhyzrqfmr063pfbhxcw6rv7vc3ysgljbf"; depends=[Biobase]; }; - DMRcatedata = derive2 { name="DMRcatedata"; version="2.18.0"; sha256="0zdkhc0vy021yhbb4bqs8k1mfw2gdjngsy2lnhh66jjnv798w1zy"; depends=[ExperimentHub GenomicFeatures Gviz IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 plyr readxl rtracklayer]; }; - DNAZooData = derive2 { name="DNAZooData"; version="1.0.0"; sha256="192ra4fdjq99qi4zsbr0x3b86sqnffwj1iz8qx3k3lx64lzshhi0"; depends=[BiocFileCache HiCExperiment rjson S4Vectors]; }; - DeSousa2013 = derive2 { name="DeSousa2013"; version="1.36.0"; sha256="1wdi643f53gz6n81hkb89vf67krsdis77d3xlvgx5vizs8prj3mc"; depends=[affy AnnotationDbi Biobase cluster ConsensusClusterPlus frma frmaTools gplots hgu133plus2_db hgu133plus2frmavecs pamr rgl ROCR siggenes survival sva]; }; - DmelSGI = derive2 { name="DmelSGI"; version="1.32.0"; sha256="1fkmm2j1gclffzsbjs5mkhibqkrf0vm2v1jymg5jr5qj227bksnh"; depends=[abind gplots igraph knitr limma rhdf5 TSP]; }; - DonaPLLP2013 = derive2 { name="DonaPLLP2013"; version="1.38.0"; sha256="0dqc3k9bbgxk0bxi4hwxf2iinr6i3nk6cdqvprj6nl291b55zd0w"; depends=[EBImage]; }; - DropletTestFiles = derive2 { name="DropletTestFiles"; version="1.10.0"; sha256="17ap7r7d2v2wfx4hj9l0l31anrhwc5mnyjbnqyqs1vj6g3wkz29g"; depends=[AnnotationHub ExperimentHub S4Vectors]; }; - DrugVsDiseasedata = derive2 { name="DrugVsDiseasedata"; version="1.36.0"; sha256="1rrln6a9bfk2xwrgjpfqd2sdrfk0nwzhcj1jijsr1nifww9sr1jf"; depends=[]; }; - DuoClustering2018 = derive2 { name="DuoClustering2018"; version="1.18.0"; sha256="1lxcz8h9n7cnb9grmbz4drcm032zjy7ji6vhgppf4im4rs86l4v6"; depends=[dplyr ExperimentHub ggplot2 ggthemes magrittr mclust purrr reshape2 tidyr viridis]; }; - DvDdata = derive2 { name="DvDdata"; version="1.36.0"; sha256="16s6qdn54fw3jdc8y6p13kv50andbm0b6z9ylv0fgjyljsyac8d9"; depends=[]; }; - EGSEAdata = derive2 { name="EGSEAdata"; version="1.28.0"; sha256="1g7vqzkljndy94rwn6xzf1b9cga3cvslcxvans2lb0dw0968sxsr"; depends=[]; }; - ELMER_data = derive2 { name="ELMER.data"; version="2.24.0"; sha256="08kaz2mzmp1flkmml11kr9pi9520qkf3hbcj4s1dnk58895rhbkc"; depends=[GenomicRanges]; }; - EatonEtAlChIPseq = derive2 { name="EatonEtAlChIPseq"; version="0.38.0"; sha256="0mzvlv2bmjkyl65473x1nrwppx7pz3sss1ch6f1x1yivrl1schns"; depends=[GenomicRanges rtracklayer ShortRead]; }; - EpiMix_data = derive2 { name="EpiMix.data"; version="1.2.2"; sha256="01fppmxc7wrvy27lrnyri1mcphrmglf1d884hw0v6wyyl66h9n9z"; depends=[ExperimentHub]; }; - FANTOM3and4CAGE = derive2 { name="FANTOM3and4CAGE"; version="1.36.0"; sha256="0hrw0vrzs49vfp0jkql146xcmcbhx8gkqp2smw3xbnbpvmmqvp69"; depends=[]; }; - FIs = derive2 { name="FIs"; version="1.28.0"; sha256="1c9xh9izxjvl494k02sfl49ybibrac3977m10dgr554gqjqvz11i"; depends=[]; }; - FieldEffectCrc = derive2 { name="FieldEffectCrc"; version="1.10.0"; sha256="1nxm8ai37fifs3lpcrm3y36f4xdi84bvkq4hc94a8817bhbcb5la"; depends=[AnnotationHub BiocStyle DESeq2 ExperimentHub RUnit SummarizedExperiment]; }; - Fletcher2013a = derive2 { name="Fletcher2013a"; version="1.36.0"; sha256="0acv2djfssh3zvx8n5b9ynqs2hwhaxjnd59hnxb3kplnffrfkafp"; depends=[Biobase gplots limma VennDiagram]; }; - Fletcher2013b = derive2 { name="Fletcher2013b"; version="1.36.0"; sha256="1phawh484wpnkbanxzh9kmjdl036cs4wgy6kwyn3q1phmyj6x5b0"; depends=[Fletcher2013a igraph RColorBrewer RedeR RTN]; }; - FlowSorted_Blood_450k = derive2 { name="FlowSorted.Blood.450k"; version="1.38.0"; sha256="15xymy34yf0fymm8mjg15djmgrkjzsfbl878ckcahvfwzbhndk2p"; depends=[minfi]; }; - FlowSorted_Blood_EPIC = derive2 { name="FlowSorted.Blood.EPIC"; version="2.4.2"; sha256="01xmpya936jp1bn2h287k44afkd3hdkclfsfaysa4gky85jsv3hi"; depends=[AnnotationHub ExperimentHub genefilter minfi nlme quadprog S4Vectors SummarizedExperiment]; }; - FlowSorted_CordBlood_450k = derive2 { name="FlowSorted.CordBlood.450k"; version="1.28.0"; sha256="02ywll7xlx2p3b0la8kphrzbwd036aidk393j9fi28m037q3yziy"; depends=[minfi]; }; - FlowSorted_CordBloodCombined_450k = derive2 { name="FlowSorted.CordBloodCombined.450k"; version="1.16.0"; sha256="148difprh307fm2lax6p06gxa5mqj7ijn52ysg4kw07cwyrn3b8x"; depends=[AnnotationHub ExperimentHub IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi SummarizedExperiment]; }; - FlowSorted_CordBloodNorway_450k = derive2 { name="FlowSorted.CordBloodNorway.450k"; version="1.26.0"; sha256="18d5wf7n2v4a4p0bl6jfvi8pflg4xd0fxz1b8m0mcflxz3zph5wq"; depends=[minfi]; }; - FlowSorted_DLPFC_450k = derive2 { name="FlowSorted.DLPFC.450k"; version="1.36.0"; sha256="0v71xriinzyzb4d5gasf0as86i6wq7plxnhsrz6a50h8i5pcxp83"; depends=[minfi]; }; - GIGSEAdata = derive2 { name="GIGSEAdata"; version="1.18.0"; sha256="00y1yki2w4912p7s7wzz2m0ry6awvn9dzs41lc6nxiy6zcwpy2d0"; depends=[]; }; - GSBenchMark = derive2 { name="GSBenchMark"; version="1.20.0"; sha256="0v91l3hw8jbj631h102c58sxy0sx9zx40qmmraywf46lpfdzmy43"; depends=[]; }; - GSE103322 = derive2 { name="GSE103322"; version="1.6.0"; sha256="0h2smriyw0bvr6aigp08mlhw1dp9wgr3pcd92kazvxkak19437rm"; depends=[Biobase GEOquery]; }; - GSE13015 = derive2 { name="GSE13015"; version="1.8.0"; sha256="1hh5960780ckyv4y1p1dqba7gh48mg4cbzlfdya7rjhv3wrxjsy4"; depends=[Biobase GEOquery preprocessCore SummarizedExperiment]; }; - GSE159526 = derive2 { name="GSE159526"; version="1.6.0"; sha256="1qdhrmy6ckzvcj77ishablhwdpk3f17px35ybvqascq1a8fnh3ys"; depends=[]; }; - GSE62944 = derive2 { name="GSE62944"; version="1.28.1"; sha256="1fvxgdbhcvg57yfwgdcc10xr6wv4fr9hfm11xy77a39nsl2qh6n7"; depends=[Biobase GEOquery]; }; - GSVAdata = derive2 { name="GSVAdata"; version="1.36.0"; sha256="1z1ibk7iifla2hv3hgmjqa6lznvwz0k022la4k6jr3ag4xzwvb1n"; depends=[Biobase GSEABase hgu95a_db]; }; - GWASdata = derive2 { name="GWASdata"; version="1.38.1"; sha256="00781dqlcw1fc6gfhwby4bpa7x0v103ar5yhik4i6ivfl27sa9na"; depends=[GWASTools]; }; - GenomicDistributionsData = derive2 { name="GenomicDistributionsData"; version="1.8.0"; sha256="0s75cc0bq9j6qz2sigy6hfhnqilk2krixzn1y5krcx94c3g5vjxl"; depends=[AnnotationFilter AnnotationHub BSgenome data_table ensembldb ExperimentHub GenomeInfoDb GenomicFeatures GenomicRanges]; }; - GeuvadisTranscriptExpr = derive2 { name="GeuvadisTranscriptExpr"; version="1.28.0"; sha256="1ag28yhaq7zcny7cirh7pqs84g782nlyv5hvylwgmiwzya6zgllw"; depends=[]; }; - HCAData = derive2 { name="HCAData"; version="1.16.0"; sha256="18wvvndvjff7i2cikhmbzvpdy0vj39c9124wgrlyfk7mkic2vbvv"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; - HD2013SGI = derive2 { name="HD2013SGI"; version="1.40.0"; sha256="0ja89v320kyi24br003jr8xmmkplh5pfp83gf7ah0j73dwx8ihsz"; depends=[EBImage geneplotter gplots limma LSD RColorBrewer splots vcd]; }; - HDCytoData = derive2 { name="HDCytoData"; version="1.20.0"; sha256="1v6wv1vs6q29n7yiqakqysjnxy5xzcfqzwa84d3w2bn237zmi6r5"; depends=[ExperimentHub flowCore SummarizedExperiment]; }; - HEEBOdata = derive2 { name="HEEBOdata"; version="1.38.0"; sha256="1q5c1nfr73f087w2v48dxyx52kmavnm5ikmvlks2ls7z22m8l2qz"; depends=[]; }; - HIVcDNAvantWout03 = derive2 { name="HIVcDNAvantWout03"; version="1.40.0"; sha256="0zmxycxw7722084m840y0yk9dgnqaak4ds74mnrymwv2dipwwa91"; depends=[]; }; - HMP16SData = derive2 { name="HMP16SData"; version="1.20.0"; sha256="0dg08nmj4s9wlg2v7r3jgjph8vwdrizwpiyi6ip38amyivhv3dcv"; depends=[AnnotationHub assertthat dplyr ExperimentHub kableExtra knitr magrittr readr S4Vectors stringr SummarizedExperiment tibble]; }; - HMP2Data = derive2 { name="HMP2Data"; version="1.14.0"; sha256="04p2hqbnzdnlsk916hkxrz6xk4wwrzpf0q4phay9qf46rf1akmq3"; depends=[AnnotationHub assertthat data_table dplyr ExperimentHub kableExtra knitr magrittr MultiAssayExperiment phyloseq readr S4Vectors SummarizedExperiment]; }; - HSMMSingleCell = derive2 { name="HSMMSingleCell"; version="1.20.0"; sha256="1agml5ysxaksy13zd6y59qqcwqxn2ipzwpd7hf6ad41w39lwv6yf"; depends=[]; }; - HarmanData = derive2 { name="HarmanData"; version="1.28.0"; sha256="09q55j8y51iiq2smhz3ll9inwj8x7b8wlp4jxqlr8qas4ry2xy4j"; depends=[]; }; - HarmonizedTCGAData = derive2 { name="HarmonizedTCGAData"; version="1.22.0"; sha256="0xihwysrnz3pbdci8dnw5irlr4lkgs2ll7fj1adjqrz5v9w3c856"; depends=[ExperimentHub]; }; - HelloRangesData = derive2 { name="HelloRangesData"; version="1.26.0"; sha256="1h9bckqkxh3h6cmyz37hmixs7razayar9bdip0fx0bwfx42dv3rz"; depends=[]; }; - HiCDataHumanIMR90 = derive2 { name="HiCDataHumanIMR90"; version="1.20.0"; sha256="17a0z64aik6z2b8kd1nf5ks3q92042jkp5lix9rnwr5g1zj0k458"; depends=[]; }; - HiCDataLymphoblast = derive2 { name="HiCDataLymphoblast"; version="1.36.0"; sha256="0a795z4scdzmdg9nykayc6yl1i9wb4pyc82ha7d1ybibv4cq54hm"; depends=[]; }; - HiContactsData = derive2 { name="HiContactsData"; version="1.2.0"; sha256="02jjqf2nyqgrf3vsy8m8whs4dgrp1fw26fal24kcqkkh46mx25m6"; depends=[AnnotationHub BiocFileCache ExperimentHub]; }; - HighlyReplicatedRNASeq = derive2 { name="HighlyReplicatedRNASeq"; version="1.12.0"; sha256="0f21yh0gvxnz5bd0092cdh5rfq672lh6ka8wv5qs7wnnmswmjhgc"; depends=[ExperimentHub S4Vectors SummarizedExperiment]; }; - Hiiragi2013 = derive2 { name="Hiiragi2013"; version="1.36.0"; sha256="0j49srglb46ya5vdk74s1jb0lniddi852nzclbrria5lw7myydhl"; depends=[affy Biobase boot clue cluster genefilter geneplotter gplots gtools KEGGREST lattice latticeExtra MASS mouse4302_db RColorBrewer xtable]; }; - HumanAffyData = derive2 { name="HumanAffyData"; version="1.26.0"; sha256="18mg6f7h9v9s5hp0qjmj0kjag5s8l9piqwlql3v9fd3bvb3cmr5v"; depends=[Biobase ExperimentHub]; }; - IHWpaper = derive2 { name="IHWpaper"; version="1.28.0"; sha256="0h1zp5yi2m1yabbwz026hyi861gn7qdpfxm74msaw9jq5yssid5l"; depends=[Biobase BiocGenerics BiocParallel cowplot DESeq2 dplyr fdrtool genefilter ggplot2 IHW qvalue Rcpp SummarizedExperiment]; }; - ITALICSData = derive2 { name="ITALICSData"; version="2.38.0"; sha256="1pzdsjy9aggqb7kmlw5vig0rgyvn53kdgc67lip3lf589d2gzgm1"; depends=[]; }; - Illumina450ProbeVariants_db = derive2 { name="Illumina450ProbeVariants.db"; version="1.36.0"; sha256="09h1l9j0c7q4g31rxq7fw8m4z0n5q71yziwdvgaiy5cpfwqjckqy"; depends=[]; }; - IlluminaDataTestFiles = derive2 { name="IlluminaDataTestFiles"; version="1.38.0"; sha256="0vihvafpic31ykn2wb9xd0hmbrffyjyf1dgl29mq63xifmcvrfgc"; depends=[]; }; - Iyer517 = derive2 { name="Iyer517"; version="1.42.0"; sha256="14qx24m9z6vvprljd2py80nf8zhglb38z0av32h4741z4f0xzl48"; depends=[Biobase]; }; - JASPAR2014 = derive2 { name="JASPAR2014"; version="1.36.0"; sha256="1lghgnz543j921va752fwll4cw7aniz2nz1w1ddxwiszvymbflf9"; depends=[Biostrings]; }; - JASPAR2016 = derive2 { name="JASPAR2016"; version="1.28.0"; sha256="1c7c7s71gs80z84g6aigh0z23drjimhf91ks3g5k8py7285kxi07"; depends=[]; }; - KEGGandMetacoreDzPathwaysGEO = derive2 { name="KEGGandMetacoreDzPathwaysGEO"; version="1.20.0"; sha256="0vwfv9abs1js73lf5lblg43n95n71f2mflmhhidnkzh5vjks1wmf"; depends=[Biobase BiocGenerics]; }; - KEGGdzPathwaysGEO = derive2 { name="KEGGdzPathwaysGEO"; version="1.38.0"; sha256="0lvdvsd2vxrcgbj6w4jfh35a5bc6z9p9srhfsdv07x081ps3gmdc"; depends=[Biobase BiocGenerics]; }; - KOdata = derive2 { name="KOdata"; version="1.26.0"; sha256="02hdm1q09zlpkringl9r6id3437lv8sx1w7m0z9c1q78qbwq4grl"; depends=[]; }; - LRcellTypeMarkers = derive2 { name="LRcellTypeMarkers"; version="1.8.0"; sha256="074p90hasbd1cp1y6j10fvhav1f24lzd91w8vx27lsy5b2l5bd2l"; depends=[ExperimentHub]; }; - LiebermanAidenHiC2009 = derive2 { name="LiebermanAidenHiC2009"; version="0.38.0"; sha256="0axnw804p2rnywd69a0d6sy9d5mrbhwyp9pidia53iqzvpmz9n6p"; depends=[IRanges KernSmooth]; }; - ListerEtAlBSseq = derive2 { name="ListerEtAlBSseq"; version="1.32.1"; sha256="0iq60xrl9c38zr50hl1np99pjw0aqn8wa4m0hg7bgihsydxfqakk"; depends=[methylPipe]; }; - LungCancerACvsSCCGEO = derive2 { name="LungCancerACvsSCCGEO"; version="1.36.0"; sha256="0jy79a07c2bl2awinafym60x5z4yx9wwn9kpw1qdyvgd58z76cn6"; depends=[]; }; - LungCancerLines = derive2 { name="LungCancerLines"; version="0.38.0"; sha256="15gz5q3bgqd1hdb6fxvsli0d49qlmfp9nmvkascbndnzl31l4g52"; depends=[Rsamtools]; }; - M3DExampleData = derive2 { name="M3DExampleData"; version="1.26.0"; sha256="06gf301gmrjssszz73gh6l7mhsnrjsr7smr3ylp86pm031bpix0i"; depends=[]; }; - MACSdata = derive2 { name="MACSdata"; version="1.8.0"; sha256="0rfdax75nqi4krjs0dkixnz99likfzibkn5gc95dgwvg09p2h3zg"; depends=[]; }; - MAQCsubset = derive2 { name="MAQCsubset"; version="1.38.0"; sha256="0iyiw4whgqqyr1qq0l1iw0jx4nxyjzhfpn7p5hhhlnq8fh3jghbk"; depends=[affy Biobase lumi]; }; - MAQCsubsetILM = derive2 { name="MAQCsubsetILM"; version="1.38.0"; sha256="09nrmg7nj7cp64g607zbf74w2mp8lcwxwy4v22xjjmnk9vfv98x7"; depends=[Biobase lumi]; }; - MEDIPSData = derive2 { name="MEDIPSData"; version="1.36.0"; sha256="0fg0chd8dxsddri47741y7v3cvhyg8sdx4ia3syrrf06mjrx27dh"; depends=[]; }; - MEEBOdata = derive2 { name="MEEBOdata"; version="1.38.0"; sha256="08pzvw8kkgmwyng27kwyna483ibynac9qcqy2sjrzqks8dsq3b87"; depends=[]; }; - MIGSAdata = derive2 { name="MIGSAdata"; version="1.24.0"; sha256="1s7fyf8n86a3znacjjs0zf22amw4rlgnvw2idld0np0yz81ggzs2"; depends=[]; }; - MMAPPR2data = derive2 { name="MMAPPR2data"; version="1.14.0"; sha256="06hij0aylifyfj6pa0kbbaz06y9rdamrs76mvh6h38yzsnm9mgp7"; depends=[Rsamtools]; }; - MMDiffBamSubset = derive2 { name="MMDiffBamSubset"; version="1.36.0"; sha256="0p4l0brczasfpfmc3mx3662g8dni644q19lp4jcmdcjy5mkv4f4r"; depends=[]; }; - MOFAdata = derive2 { name="MOFAdata"; version="1.16.1"; sha256="195j9d3m0rja8r986rn8437ajvmwx060ic2427iqvghfpr6jjvhw"; depends=[]; }; - MSMB = derive2 { name="MSMB"; version="1.18.0"; sha256="0ghkba9jph3sbc677a7x7wxhvrjh0whnq6dvix6ql5d377mxx5sq"; depends=[tibble]; }; - MUGAExampleData = derive2 { name="MUGAExampleData"; version="1.20.0"; sha256="14mii5v2s9ml5vazy55nf9b5qqb22ibbayapiwc9j0qqyvi8xdc4"; depends=[]; }; - MerfishData = derive2 { name="MerfishData"; version="1.2.0"; sha256="0097riwwxi41hm2xdglbakfb9wf7p9p7mikfg48hd7axgj2hykma"; depends=[AnnotationHub BumpyMatrix EBImage ExperimentHub S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; - MetaGxBreast = derive2 { name="MetaGxBreast"; version="1.20.0"; sha256="0q2cl5pkqa0r5hqbqs7jww1jjfdlmjvd5cnfq73g86kyg4hpl88z"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; }; - MetaGxOvarian = derive2 { name="MetaGxOvarian"; version="1.20.0"; sha256="00xgw0zsmkahyccksfzgkajk37d018frm7sg71x0b04n6rbc1ipv"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; }; - MetaGxPancreas = derive2 { name="MetaGxPancreas"; version="1.20.0"; sha256="08sk8ghgx29sd5r0vjy02xmpc4r5pnsmcbixdh4jwmakhq500r57"; depends=[AnnotationHub ExperimentHub impute S4Vectors SummarizedExperiment]; }; - MetaScope = derive2 { name="MetaScope"; version="1.0.0"; sha256="0z6dibbqqvhmjspylr4qfxqf58ifayc0wsknvkp4gbf7w6vqacx6"; depends=[BiocFileCache Biostrings data_table dplyr ggplot2 magrittr Matrix MultiAssayExperiment qlcMatrix R_utils Rbowtie2 readr rlang Rsamtools S4Vectors stringr SummarizedExperiment taxize tidyr]; }; - MethylAidData = derive2 { name="MethylAidData"; version="1.32.0"; sha256="1zalfay2h59pnjs0gv9i5rk2paiqd6mvs5bhvc3gp7sy5xkr3d5m"; depends=[MethylAid]; }; - MethylSeqData = derive2 { name="MethylSeqData"; version="1.10.0"; sha256="0gfr0ic7fbys270kyd060nad0x1amnf9n2i1rip6j8s56bllw7kg"; depends=[ExperimentHub GenomeInfoDb GenomicRanges HDF5Array IRanges rhdf5 S4Vectors SummarizedExperiment]; }; - MicrobiomeBenchmarkData = derive2 { name="MicrobiomeBenchmarkData"; version="1.2.0"; sha256="1928cjbhagairm3kdxbjp8zqfvs895glbkxg700sckcvb7klrw53"; depends=[ape BiocFileCache S4Vectors SummarizedExperiment TreeSummarizedExperiment]; }; - MouseGastrulationData = derive2 { name="MouseGastrulationData"; version="1.14.0"; sha256="155kci5isq7mlbvv8mdl2jjpafm3pbv1likhls70aa746spr1h17"; depends=[BiocGenerics BumpyMatrix ExperimentHub S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; - MouseThymusAgeing = derive2 { name="MouseThymusAgeing"; version="1.8.0"; sha256="0q94dfyprj4g3n7mxh70zpabmn6w6jl8d4wqk26h2ix6amwbr6yz"; depends=[BiocGenerics ExperimentHub S4Vectors SingleCellExperiment SummarizedExperiment]; }; - NCIgraphData = derive2 { name="NCIgraphData"; version="1.36.0"; sha256="13p934lh5zhlj8824ih3fl36k8rdmym4xqfd4qpjr80mzdy8kxrg"; depends=[]; }; - NGScopyData = derive2 { name="NGScopyData"; version="1.20.0"; sha256="04xpwrpsl5l7zmymvax1l7p99sg21h96j0q5bq4ydv1jlzby6klx"; depends=[]; }; - NanoporeRNASeq = derive2 { name="NanoporeRNASeq"; version="1.10.0"; sha256="0lbwzbcqz0xk28z2c0blx7c93bvz41pnr7pywj1p9cd7r705z3dk"; depends=[ExperimentHub]; }; - NestLink = derive2 { name="NestLink"; version="1.16.0"; sha256="0a032dq0k2k17y7lz752a4ghg1j1w3x8kd7bwjw61ry2plr8gysl"; depends=[AnnotationHub Biostrings ExperimentHub gplots protViz ShortRead]; }; - NetActivityData = derive2 { name="NetActivityData"; version="1.2.0"; sha256="1kza7dp2xvdmn31yw7pngsr604bkam6yf35wgh57cg70y3azz13k"; depends=[]; }; - Neve2006 = derive2 { name="Neve2006"; version="0.38.0"; sha256="1q75ldhww0kgq050b64310qnw81haz8wacz3rwkb1q217frbr4lx"; depends=[annotate Biobase hgu133a_db]; }; - NxtIRFdata = derive2 { name="NxtIRFdata"; version="1.6.0"; sha256="0b0swgv8wmqdkmg9ymrcasl2k0hbbgd19ci78fwg6csz84x2j9lx"; depends=[BiocFileCache ExperimentHub R_utils rtracklayer]; }; - OMICsPCAdata = derive2 { name="OMICsPCAdata"; version="1.18.0"; sha256="0vryqb2xj20dhcnis7ld9r39az8jz99pbwxn9xvdv96a8jnnc731"; depends=[MultiAssayExperiment]; }; - ObMiTi = derive2 { name="ObMiTi"; version="1.8.0"; sha256="1d401zci1qngmz40712g3nbq48dfalln12slbchrdahyh1lyw8r9"; depends=[ExperimentHub SummarizedExperiment]; }; - OnassisJavaLibs = derive2 { name="OnassisJavaLibs"; version="1.22.0"; sha256="1mqmw52a7r3q67n78micnv2xfqs0g8kj1x853cx0pfmhmr7dpi8w"; depends=[rJava]; }; - PCHiCdata = derive2 { name="PCHiCdata"; version="1.28.0"; sha256="0y8ff897yqvlz3cxz4c16y2qx9yil5h10igwwrs8pka14n61ay42"; depends=[Chicago]; }; - PREDAsampledata = derive2 { name="PREDAsampledata"; version="0.40.0"; sha256="1m2h33rk4czs2x0axnj539whjih7ydfhrhgphg6g7dsd417pdihv"; depends=[affy annotate Biobase PREDA]; }; - PWMEnrich_Dmelanogaster_background = derive2 { name="PWMEnrich.Dmelanogaster.background"; version="4.34.0"; sha256="1ngzn64yr05h25m5k4glnxpf47m47nkx38c2x5rxh9g68rv8gi16"; depends=[PWMEnrich]; }; - PWMEnrich_Hsapiens_background = derive2 { name="PWMEnrich.Hsapiens.background"; version="4.34.0"; sha256="1dzas863k8s3cr4a79iiw1750c2azhgxscbdv7qsy86kx8jzysaz"; depends=[PWMEnrich]; }; - PWMEnrich_Mmusculus_background = derive2 { name="PWMEnrich.Mmusculus.background"; version="4.34.0"; sha256="0w8f5v4j54ywv3mg9bv0sdc8wsab3crjc21qs3hl0pjihv719v3f"; depends=[PWMEnrich]; }; - PasillaTranscriptExpr = derive2 { name="PasillaTranscriptExpr"; version="1.28.0"; sha256="0wyahjm7cd53f735vlw7gfvdcryzkhdc6b2nxy4xlis11g9a890m"; depends=[]; }; - PathNetData = derive2 { name="PathNetData"; version="1.36.1"; sha256="0hdm4kvyzncaf5yjplfkglv7p8a87zcxck1vh9r9h761amf8samh"; depends=[]; }; - PepsNMRData = derive2 { name="PepsNMRData"; version="1.18.0"; sha256="04vff5s42bkhyl2zf05r06blvp11qpz326fd13jrgcsx8lkrr0ys"; depends=[]; }; - PhyloProfileData = derive2 { name="PhyloProfileData"; version="1.14.0"; sha256="02fhwgbd22v4ra7r3dzhz39ls2l0la5fczn38ljm3xqmvagacxw9"; depends=[BiocStyle Biostrings ExperimentHub]; }; - ProData = derive2 { name="ProData"; version="1.38.0"; sha256="1vc5zhpmv2ixcfd1sqhy6csbl458wda8wdwywqjwxsgnkpj55pba"; depends=[Biobase]; }; - PtH2O2lipids = derive2 { name="PtH2O2lipids"; version="1.26.0"; sha256="0mgqdx12gz0zbvbljrbiav3k7j3394ab44h6m5kl2v4ky76w5nfp"; depends=[CAMERA LOBSTAHS xcms]; }; - QDNAseq_hg19 = derive2 { name="QDNAseq.hg19"; version="1.30.0"; sha256="1rifky3pyzjdd5qhgda0kcfms3zb3xk4j6bys4h5zkqkcyn4zya2"; depends=[QDNAseq]; }; - QDNAseq_mm10 = derive2 { name="QDNAseq.mm10"; version="1.30.0"; sha256="1sbi24v6sigfrxvfw1pjl41fp66q9qkjqll7gfw8rdgn9c55875w"; depends=[QDNAseq]; }; - QUBICdata = derive2 { name="QUBICdata"; version="1.28.0"; sha256="0kd5ciyphw34s7zi0g9df2kbg4395yvyfxkbz49nv6byqc9x8a1d"; depends=[]; }; - RGMQLlib = derive2 { name="RGMQLlib"; version="1.20.0"; sha256="042y3nbs706mbx10ffbd47bs147p34qk9sj2iw84c703ly5y6v0g"; depends=[]; }; - RITANdata = derive2 { name="RITANdata"; version="1.24.0"; sha256="1d6mi3nvdlp7v37iayfhxqgagv8m3gy5i4gylqy7jgdh0rg9gyin"; depends=[]; }; - RLHub = derive2 { name="RLHub"; version="1.6.0"; sha256="1lx4w9m5ddzx3v4ky7yxiq7ydd0dl7xfh9fcmf53apc6fnql13h2"; depends=[AnnotationHub ExperimentHub]; }; - RMassBankData = derive2 { name="RMassBankData"; version="1.38.0"; sha256="1f1zycvicq788xdwqr28j1ml7gs33kjvl49bjb2bjjnw338863n1"; depends=[]; }; - RNAinteractMAPK = derive2 { name="RNAinteractMAPK"; version="1.38.0"; sha256="1cvc5nm4zdy36ghbx40ynami41cbsna194lnhjnf43qp9agxvr3r"; depends=[Biobase fields gdata genefilter lattice MASS RNAinteract sparseLDA]; }; - RNAmodR_Data = derive2 { name="RNAmodR.Data"; version="1.14.0"; sha256="1nhn3i5jvyw99133smk6k29b62lnw9fsy2l0hzkman396ffcli4p"; depends=[ExperimentHub ExperimentHubData]; }; - RNAseqData_HNRNPC_bam_chr14 = derive2 { name="RNAseqData.HNRNPC.bam.chr14"; version="0.38.0"; sha256="1q9dzm3h2i7b10c5i53flpgsrywx6wfmkcm0185jb71qp2pd72n3"; depends=[]; }; - RRBSdata = derive2 { name="RRBSdata"; version="1.20.0"; sha256="18sgiijx66nzp9gxi1s311svvki3y6q3wmm1bvkih8sw153k8nyi"; depends=[BiSeq]; }; - RTCGA_CNV = derive2 { name="RTCGA.CNV"; version="1.28.0"; sha256="1kq0zm99m5b8qm204yzqjhqf50xjxf8ia321x59283r64snf0jci"; depends=[RTCGA]; }; - RTCGA_PANCAN12 = derive2 { name="RTCGA.PANCAN12"; version="1.28.0"; sha256="0y2xbld3wzb8l0ynq92pxxygk16vf39cwp85lfghs2g23vr18rxw"; depends=[RTCGA]; }; - RTCGA_RPPA = derive2 { name="RTCGA.RPPA"; version="1.28.0"; sha256="08rlzll772hlw3j6y7kp29gshjikyxs4z4av4392jmxlssh81gxh"; depends=[RTCGA]; }; - RTCGA_clinical = derive2 { name="RTCGA.clinical"; version="20151101.30.0"; sha256="11l4iz50dq8ym3ah7s1fh11sh8rzd7hzhcll1ah75r8wicj7pkfv"; depends=[RTCGA]; }; - RTCGA_mRNA = derive2 { name="RTCGA.mRNA"; version="1.28.0"; sha256="1z3i60qxx47p2vzijbyfba1kzf2106aqp56ksrxc2d7gyb168mkd"; depends=[RTCGA]; }; - RTCGA_methylation = derive2 { name="RTCGA.methylation"; version="1.28.0"; sha256="1svyqy2xwnmqb8hdhzbj1r22ar3mzk9rbyb7vd3fz7k9k4ja979i"; depends=[RTCGA]; }; - RTCGA_miRNASeq = derive2 { name="RTCGA.miRNASeq"; version="1.28.0"; sha256="0qfnii0x0pzx4jirmnvk4mgr4av14gj3i2jpgi0nblhcccjbrjp5"; depends=[RTCGA]; }; - RTCGA_mutations = derive2 { name="RTCGA.mutations"; version="20151101.30.0"; sha256="11mhy4jv6y77n00pl69piiwm6ppsmfggli703l1w4ddyv7qrbxll"; depends=[RTCGA]; }; - RTCGA_rnaseq = derive2 { name="RTCGA.rnaseq"; version="20151101.30.0"; sha256="0qcgpfq8jx5h6b1bdrpk9axn8jbbvga8l5bxxjn07xnjih0licxm"; depends=[RTCGA]; }; - RUVnormalizeData = derive2 { name="RUVnormalizeData"; version="1.20.0"; sha256="19jcad2mwjgazxmkqk5gswxx4bman6rz56fl9p6bcav5vhxrwyp3"; depends=[Biobase]; }; - RcisTarget_hg19_motifDBs_cisbpOnly_500bp = derive2 { name="RcisTarget.hg19.motifDBs.cisbpOnly.500bp"; version="1.20.0"; sha256="1izg549fmq14jcwqwnjklcgqqfw9iwgg0b7z946hcafw8j2p5g94"; depends=[data_table]; }; - ReactomeGSA_data = derive2 { name="ReactomeGSA.data"; version="1.14.0"; sha256="135xbi9xwlvhydg75x3jkm00banzlxixsbgnl425bcgvwd0yzgg7"; depends=[edgeR limma ReactomeGSA Seurat]; }; - RegParallel = derive2 { name="RegParallel"; version="1.18.0"; sha256="1vv82qp9wrq7ijz7ckza6ggdrcqyxr06pdzf8dzjfxgayg5hb75y"; depends=[arm data_table doParallel foreach iterators stringr survival]; }; - RforProteomics = derive2 { name="RforProteomics"; version="1.38.1"; sha256="0xim44shhsyf9f1vwghza16vsj1i5vks0hs21qaq8i700iak64mh"; depends=[BiocManager biocViews MSnbase R_utils]; }; - RnBeads_hg19 = derive2 { name="RnBeads.hg19"; version="1.32.0"; sha256="02zdyy8m0bxq999s4jva5rw0xi1vs1y4ayz7n5m92xmcygii5vf2"; depends=[GenomicRanges]; }; - RnBeads_hg38 = derive2 { name="RnBeads.hg38"; version="1.32.0"; sha256="0672v6nq3hfakalj07j14gb5q6y7pvwwg1n6qd3ihbvidjkbwb38"; depends=[GenomicRanges]; }; - RnBeads_mm10 = derive2 { name="RnBeads.mm10"; version="2.8.0"; sha256="0pspzzf5df4cidrqxqh189pkj4gmqycyfhj64q9s2z0yla7f00ga"; depends=[GenomicRanges]; }; - RnBeads_mm9 = derive2 { name="RnBeads.mm9"; version="1.32.0"; sha256="10nnpcslsz66d0lb6d45mi81bjy3lacqmg5b6b45vqnpd2dyfp8s"; depends=[GenomicRanges]; }; - RnBeads_rn5 = derive2 { name="RnBeads.rn5"; version="1.32.0"; sha256="1j5zzvd1la0gds19k72n08j1k7ca5c2l5mdv791qmhsajsc2gw8b"; depends=[GenomicRanges]; }; - RnaSeqSampleSizeData = derive2 { name="RnaSeqSampleSizeData"; version="1.32.0"; sha256="0shwbvazcgcd48l3vlf26kd9x5jhl0fa2wiy8d1bic69976zxjp7"; depends=[edgeR]; }; - SBGNview_data = derive2 { name="SBGNview.data"; version="1.14.0"; sha256="1nm4w12v7j9c5sjd8fybzda219rzcrr53majp8zhdmlvhc32jnqz"; depends=[bookdown knitr rmarkdown]; }; - SCATEData = derive2 { name="SCATEData"; version="1.10.0"; sha256="0p0y8mkcg99dpwvp7spxx047kyr7mdflnnlfpb4i232q0yxz2z03"; depends=[ExperimentHub GenomicAlignments GenomicRanges]; }; - SCLCBam = derive2 { name="SCLCBam"; version="1.32.0"; sha256="0bd791ixndsqmc7jxwszxs4ldn2bd31wmh94123jid8qr0lgk8qr"; depends=[]; }; - SFEData = derive2 { name="SFEData"; version="1.2.0"; sha256="1fnp12l64086rjjjs3d5axskhzc1r1lq1xgyj84akdpn1n90r4g7"; depends=[AnnotationHub BiocFileCache ExperimentHub]; }; - SNAData = derive2 { name="SNAData"; version="1.46.0"; sha256="1hm33xjn7wq9aw2x63dqz9dys9rv4lbl24pzbpndn65wl5qmzsk4"; depends=[graph]; }; - SNAGEEdata = derive2 { name="SNAGEEdata"; version="1.36.0"; sha256="0z5vw7y1f3adkpiyxmz2xlgq0ywz9klcpkr53m79wy217zgi2fva"; depends=[]; }; - SNPhoodData = derive2 { name="SNPhoodData"; version="1.30.0"; sha256="106vzq39jkr3psw7j8vr8d96phqrjhqcimgdvc1hf8l9s2y352zj"; depends=[]; }; - STexampleData = derive2 { name="STexampleData"; version="1.8.0"; sha256="1bx4n81ybcxp7z4sfz3qk12fh3qfvaclaaxcb82x78f9xl07fq1g"; depends=[ExperimentHub SpatialExperiment]; }; - SVM2CRMdata = derive2 { name="SVM2CRMdata"; version="1.32.0"; sha256="1y07c6kqslrr7bb0y114hvw0jvgf6pgqh3dly398f41p8xi8wj6z"; depends=[]; }; - SimBenchData = derive2 { name="SimBenchData"; version="1.8.0"; sha256="0fq196gvb3i12f1b0q5xfhfg4amxskd7bgzy03x0k62v5bk4w27f"; depends=[ExperimentHub S4Vectors]; }; - Single_mTEC_Transcriptomes = derive2 { name="Single.mTEC.Transcriptomes"; version="1.28.0"; sha256="03apc7nq51lmqnvch0idzviz35d12n1pzhxaa44zxw9jvbfps9a2"; depends=[]; }; - SingleCellMultiModal = derive2 { name="SingleCellMultiModal"; version="1.12.3"; sha256="01fq5n5djqjlj5gkzj2fsw2gw1glm6sr83ggpl0i8w4r6nl9wabp"; depends=[AnnotationHub BiocBaseUtils BiocFileCache ExperimentHub HDF5Array Matrix MultiAssayExperiment S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; - SingleMoleculeFootprintingData = derive2 { name="SingleMoleculeFootprintingData"; version="1.8.0"; sha256="11nkyzjrc7jd88qyx5i3s0l7zzh6ld1w59fxaa9v7bx72b1yjvh4"; depends=[ExperimentHub]; }; - SomatiCAData = derive2 { name="SomatiCAData"; version="1.38.0"; sha256="0f82mxh59gsxpfggzjh4qz8pzh7bwif05kn0kpi5ja0nj8mgj0c4"; depends=[]; }; - SomaticCancerAlterations = derive2 { name="SomaticCancerAlterations"; version="1.36.0"; sha256="1j1ky7pff22h08jn9is7afwplqq8ypg7cv81i0ymjfnjlqiks1h3"; depends=[GenomicRanges IRanges S4Vectors]; }; - SpikeIn = derive2 { name="SpikeIn"; version="1.42.1"; sha256="07a0fbpz82qb2l4b5hlg4m3xw5ls357ygqsbb39kxj05qjq8y5ra"; depends=[affy]; }; - SpikeInSubset = derive2 { name="SpikeInSubset"; version="1.40.1"; sha256="0khjy2wngjxbfqdg332j45j8nzs5z9njzk3i99qc0z0l1xdzblvs"; depends=[affy Biobase]; }; - TBX20BamSubset = derive2 { name="TBX20BamSubset"; version="1.36.0"; sha256="17fcm8qpqrc5mwa9pyj77dh5a28k7k2wj6dipckdfpl34dg3n8nz"; depends=[Rsamtools xtable]; }; - TCGAMethylation450k = derive2 { name="TCGAMethylation450k"; version="1.36.0"; sha256="17r6vh1n1d7017717ix0scfsqzqzgldq119qyjdlg1f4qpngdlas"; depends=[]; }; - TCGAWorkflowData = derive2 { name="TCGAWorkflowData"; version="1.24.1"; sha256="1cgpy8b2k02xl6fa84b38nx973dygw0f3i83rjinak763kcfa2gj"; depends=[SummarizedExperiment]; }; - TCGAbiolinksGUI_data = derive2 { name="TCGAbiolinksGUI.data"; version="1.20.0"; sha256="0jnm7qca2j72jhddhs10q5vfalpips7bs5mlmk4ma9gcbcjzwqql"; depends=[]; }; - TCGAcrcmRNA = derive2 { name="TCGAcrcmRNA"; version="1.20.0"; sha256="1yd68ral8v7ix2i77vph1y9kp67hrb6mz2lchjkw9x6lkagvfgh5"; depends=[Biobase]; }; - TCGAcrcmiRNA = derive2 { name="TCGAcrcmiRNA"; version="1.20.0"; sha256="1avv6skwirf0ysvppwbv9xid9dgbnbzwabkn0x5ilry8cj8qvcqy"; depends=[Biobase]; }; - TENxBUSData = derive2 { name="TENxBUSData"; version="1.14.0"; sha256="0cr0imz4w9j4hy0siknyiml68x0038j779a5wk7pqggpqpc4x7qw"; depends=[AnnotationHub BiocGenerics ExperimentHub]; }; - TENxBrainData = derive2 { name="TENxBrainData"; version="1.20.0"; sha256="12rdkpv8x3baad762pgszfswh364v78fmza9v3ml6j4kk88qjcvj"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; - TENxPBMCData = derive2 { name="TENxPBMCData"; version="1.18.0"; sha256="1yd03zrqzwz16c8k4k3nbz89n1z2b2xbbzgwslbn4kji303pd5np"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; - TENxVisiumData = derive2 { name="TENxVisiumData"; version="1.8.0"; sha256="1nniysrja6sgk643p8vj9mw70wiwzwlcv8myackn8bpqz52misr3"; depends=[ExperimentHub SpatialExperiment]; }; - TMExplorer = derive2 { name="TMExplorer"; version="1.10.0"; sha256="03l8l3ax979y1fwlldgfynkd5s31dfh2l38d7dmdrcn89y3y1sjc"; depends=[BiocFileCache Matrix SingleCellExperiment]; }; - TabulaMurisData = derive2 { name="TabulaMurisData"; version="1.18.0"; sha256="0pndzjyvzfa83wmv3wry4faks3lf3jbc6mh768dqc7k5awvhj009"; depends=[ExperimentHub]; }; - TabulaMurisSenisData = derive2 { name="TabulaMurisSenisData"; version="1.6.0"; sha256="0ghy0fyjh6pd7h85k109bmfwc829zwpf18bss385h0528zjaj6zk"; depends=[AnnotationHub ExperimentHub gdata HDF5Array SingleCellExperiment SummarizedExperiment]; }; - TargetScoreData = derive2 { name="TargetScoreData"; version="1.36.0"; sha256="0dv52qhw53f04kgsx915ckhw5h5jd2dh3r95iii30pdn1ffhic2l"; depends=[]; }; - TargetSearchData = derive2 { name="TargetSearchData"; version="1.38.0"; sha256="09xhlih952y6dz1jpc9pg8spgki7zcprl08vp4msj2jzy7b4s8nj"; depends=[]; }; - TimerQuant = derive2 { name="TimerQuant"; version="1.30.0"; sha256="1xyxra4yxd5jf2ksb9pgag3vjn8r33wlp1czsmxianzkikyg44gw"; depends=[deSolve dplyr ggplot2 gridExtra locfit shiny]; }; - VariantToolsData = derive2 { name="VariantToolsData"; version="1.24.0"; sha256="0kschpjhqhrrrihzafmpzb6n1ccjmi7f3s1a90s6221hh65yynbl"; depends=[BiocGenerics GenomicRanges VariantAnnotation]; }; - VectraPolarisData = derive2 { name="VectraPolarisData"; version="1.4.0"; sha256="1v4z6cnil1l1xqnfl57ph6ijr34dw1dnbyayx0c2drb3hzq0c0fa"; depends=[ExperimentHub SpatialExperiment]; }; - WES_1KG_WUGSC = derive2 { name="WES.1KG.WUGSC"; version="1.32.0"; sha256="03kw9i5szm6jwc5lh9v5h22gm1kd2vhi4nlb24hibi8g5dnk0pkb"; depends=[]; }; - WGSmapp = derive2 { name="WGSmapp"; version="1.12.0"; sha256="1w12rli8agaqkhhp7nj8b22mnkjg8p740sz677pdbllnm672zzq8"; depends=[GenomicRanges]; }; - WeberDivechaLCdata = derive2 { name="WeberDivechaLCdata"; version="1.2.0"; sha256="1m3vi57qk9ivrqjf223b839fipvllsxx8mw8x34whzv8mfj5x1mw"; depends=[ExperimentHub SingleCellExperiment SpatialExperiment]; }; - XhybCasneuf = derive2 { name="XhybCasneuf"; version="1.38.0"; sha256="1fbhypw6pa38lfr4i3f1j5d73p3hmrd9rjxmqghq3yss2jlk7hb9"; depends=[affy ath1121501cdf RColorBrewer tinesath1cdf]; }; - adductData = derive2 { name="adductData"; version="1.16.0"; sha256="1rnwlrg8m2hxclgi9c1vqzjglxafsqy6j5kd28gpfwc4ajm9a4hk"; depends=[AnnotationHub ExperimentHub]; }; - affycompData = derive2 { name="affycompData"; version="1.38.1"; sha256="1idrg3kx2839vfvaxdzxvzwm1cv3qqkx81mfr5gij4zva0l50nrz"; depends=[affycomp Biobase]; }; - affydata = derive2 { name="affydata"; version="1.48.1"; sha256="0si12yz2jmyva69g7a22sabvs7phizgvjcki3j0qall46i2hzqbm"; depends=[affy]; }; - airway = derive2 { name="airway"; version="1.20.0"; sha256="0z6p2la2va4x5ak8v7n5iwdnp4wcsy044k7sif9x98vh4wbc6s96"; depends=[SummarizedExperiment]; }; - alpineData = derive2 { name="alpineData"; version="1.26.0"; sha256="1337y1y8q5y8yh2r2bji8fz3nhcxbn5s6pfnnkb8kvg8r0avgmkz"; depends=[AnnotationHub ExperimentHub GenomicAlignments]; }; - antiProfilesData = derive2 { name="antiProfilesData"; version="1.36.0"; sha256="1flb19c5v9k7qnhc7mk686ml6lc4llgh35ajd7lnpjv9r490jbkc"; depends=[Biobase]; }; - aracne_networks = derive2 { name="aracne.networks"; version="1.26.0"; sha256="1dh8f1x9lqb5rm1h65r3lidrqfq11n85dq7p4pm11cnnnv4xnszp"; depends=[viper]; }; - bcellViper = derive2 { name="bcellViper"; version="1.36.0"; sha256="1ghdp307gc0y1h8956qjq1iipzipnm0jxvv2k08lzggdvhq28740"; depends=[Biobase]; }; - beadarrayExampleData = derive2 { name="beadarrayExampleData"; version="1.38.0"; sha256="1w6w2kw3fnrixzhb7420b17smmlcjg7xmdz36xmx3f7i67dfsw28"; depends=[beadarray Biobase]; }; - benchmarkfdrData2019 = derive2 { name="benchmarkfdrData2019"; version="1.14.0"; sha256="18ihbg53054yg8vxg8g4zd4dggq20gr5bvb5ivaxphjp8z1dvdsm"; depends=[ExperimentHub SummarizedExperiment]; }; - beta7 = derive2 { name="beta7"; version="1.38.0"; sha256="0l7kskdzh3zy30g7hq3xwyjpq3iyh74qb8fbzgfjr7gy7g2f43ml"; depends=[marray]; }; - biotmleData = derive2 { name="biotmleData"; version="1.24.0"; sha256="13fm555fpfq2pziyls85gi10j5k8hmkk13i2bd1x74kc272zawqn"; depends=[]; }; - biscuiteerData = derive2 { name="biscuiteerData"; version="1.14.1"; sha256="16gdjbyzzlhz9qgim122kkba0f9c3s3li08qy6r4jmfh76ixvyfh"; depends=[AnnotationHub curl ExperimentHub GenomicRanges]; }; - bladderbatch = derive2 { name="bladderbatch"; version="1.38.0"; sha256="196nnncdyzajslyd2jlsqs9b88q6rdrdl4h0sh5q0z892wpqk70h"; depends=[Biobase]; }; - blimaTestingData = derive2 { name="blimaTestingData"; version="1.20.0"; sha256="1jn0ynifm5dqf3wwfhzid1lm7zb1hvpvf8f623hd6hnryby1702a"; depends=[]; }; - bodymapRat = derive2 { name="bodymapRat"; version="1.16.0"; sha256="0ypmfdc7cgvr04vhp1x8fya933zzp2rzbfp7wzagxqh93k4515sa"; depends=[ExperimentHub SummarizedExperiment]; }; - breakpointRdata = derive2 { name="breakpointRdata"; version="1.18.0"; sha256="0wzv4gyd0idri35ixca9dxfxfgfhm4nz84gxbf44wb45dr869j0v"; depends=[]; }; - breastCancerMAINZ = derive2 { name="breastCancerMAINZ"; version="1.38.0"; sha256="0qlp2v9yw4i5svkrh5wp7arsh32nhwv1gl8nhfzj5rx5zfgmmk4f"; depends=[]; }; - breastCancerNKI = derive2 { name="breastCancerNKI"; version="1.38.0"; sha256="0n7jmwyjn9dz52hhmszipqdyl9c7zzd4k58sll7rz6z1q1hbbmlg"; depends=[]; }; - breastCancerTRANSBIG = derive2 { name="breastCancerTRANSBIG"; version="1.38.0"; sha256="0534iv39ksj9xnkxaxqqvjbi2d82i4w068r6ayh196wgr1fvymsg"; depends=[]; }; - breastCancerUNT = derive2 { name="breastCancerUNT"; version="1.38.0"; sha256="1a6khghn3fr6qv0k2llg0ypj94s50ndcbd2qh00mxjacz0wsf9cp"; depends=[]; }; - breastCancerUPP = derive2 { name="breastCancerUPP"; version="1.38.0"; sha256="10vz5qxdn4qrk107djs34gc0h1gw5idi0f19hj4ln4049ms0yjav"; depends=[]; }; - breastCancerVDX = derive2 { name="breastCancerVDX"; version="1.38.0"; sha256="0823c5prrbv5v3pjlnwh80hiavirlc7jk3hj5qqlj6177nx7izc4"; depends=[]; }; - brgedata = derive2 { name="brgedata"; version="1.22.1"; sha256="11h4wqnz6bppynvw4vmmdslfl8kprw704y3kydb5s84rp4nqrvmw"; depends=[Biobase SummarizedExperiment]; }; - bronchialIL13 = derive2 { name="bronchialIL13"; version="1.38.0"; sha256="08rpaxbxhf8p7rm25jxy8npb5bva6l60h8v47vmdn6j8p8sd7yl7"; depends=[affy]; }; - bsseqData = derive2 { name="bsseqData"; version="0.38.0"; sha256="1ppmasfmxqw2nz6sdszgrjnbh52bzhnjyi4gi1snn8ar6x05s2px"; depends=[bsseq]; }; - cMap2data = derive2 { name="cMap2data"; version="1.36.0"; sha256="0n35j81h62rq47c9p9blksfmm2135ahhz6jlkrgbrdffn9yrrc6m"; depends=[]; }; - cancerdata = derive2 { name="cancerdata"; version="1.38.0"; sha256="15s24n71zpasrr50zi6f91nn6q7m447l9x1l0xyqfpkw4pw3l327"; depends=[Biobase]; }; - ccTutorial = derive2 { name="ccTutorial"; version="1.38.0"; sha256="0gn7ipg707jll8yd90rd7iqjwa1ndrhrgli8lda12rgkw4hd1d5b"; depends=[affy Biobase Ringo topGO]; }; - ccdata = derive2 { name="ccdata"; version="1.26.0"; sha256="1yjsxr477ncjfmjki4h0aavbhsn2qq0wchrc53f752xwhr4wbksm"; depends=[]; }; - celarefData = derive2 { name="celarefData"; version="1.18.0"; sha256="1r321x3y0l618cl1z3bv3fz2fnvyk4xmic59x75kxx7bvgrzz6gn"; depends=[]; }; - celldex = derive2 { name="celldex"; version="1.10.1"; sha256="064njbv7057rbvh94wynlvhpxwal86calnr7ib8260brycykv4ai"; depends=[AnnotationDbi AnnotationHub DelayedArray DelayedMatrixStats ExperimentHub S4Vectors SummarizedExperiment]; }; - chipenrich_data = derive2 { name="chipenrich.data"; version="2.24.0"; sha256="18yn7p8pyxhp18fq7xa9kkplxrj806nkq591zznrxakamkqdnnz3"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicRanges IRanges readr rtracklayer S4Vectors]; }; - chipseqDBData = derive2 { name="chipseqDBData"; version="1.16.0"; sha256="1w2bn4n2l7sxq8qbnr3p73kxgykn865f06ydpc9ymp9myjzam51m"; depends=[AnnotationHub ExperimentHub Rsamtools S4Vectors]; }; - chromstaRData = derive2 { name="chromstaRData"; version="1.26.0"; sha256="1gspbyz5vkymgivq2zppizcp8bknbdl04nxdlp55dk5mwd56sarw"; depends=[]; }; - clustifyrdatahub = derive2 { name="clustifyrdatahub"; version="1.10.0"; sha256="09hyn88wxc7pqhl314rv4aip1wyz1czlzjx09r21xb5148hkplh1"; depends=[ExperimentHub]; }; - cnvGSAdata = derive2 { name="cnvGSAdata"; version="1.36.0"; sha256="14cyvxxwddcy499vczbk90njf7qxi2yrkasgajq81k5plbxfdd9w"; depends=[cnvGSA]; }; - colonCA = derive2 { name="colonCA"; version="1.42.0"; sha256="0nl07andj9bv9nql692f1gx2634l0bwd191van7p31z7bnsqr43i"; depends=[Biobase]; }; - crisprScoreData = derive2 { name="crisprScoreData"; version="1.4.0"; sha256="164cz37hsbbzrzscsz5d4mfw2m052bmgvyprfcg316y65bfxrngj"; depends=[AnnotationHub ExperimentHub]; }; - curatedAdipoArray = derive2 { name="curatedAdipoArray"; version="1.12.0"; sha256="1sgfk9p8qxndv7rqnyqsrfw3hznp6xpgdq900wjn2z00zbr72z10"; depends=[]; }; - curatedAdipoChIP = derive2 { name="curatedAdipoChIP"; version="1.16.0"; sha256="05a1jc0cn5hhphln6bd7mjvzglj3ajyvvnzqxy61dzwlrw6dc3ad"; depends=[ExperimentHub SummarizedExperiment]; }; - curatedAdipoRNA = derive2 { name="curatedAdipoRNA"; version="1.16.0"; sha256="031v6l60ny1s2r765sdc8spf1kzaancmkg7h11l9f118qx3hznv0"; depends=[SummarizedExperiment]; }; - curatedBladderData = derive2 { name="curatedBladderData"; version="1.36.0"; sha256="0rcdigjl6ymb4gl57r3zi2q6xjzh284v92a0w0xhxx45gkgabppq"; depends=[affy]; }; - curatedBreastData = derive2 { name="curatedBreastData"; version="2.28.0"; sha256="11w73dnhf8bd671n8vnxwrla6b5kxr4pr38gqjl83gg45mf6hqc3"; depends=[Biobase BiocStyle ggplot2 impute XML]; }; - curatedCRCData = derive2 { name="curatedCRCData"; version="2.32.0"; sha256="085dkxcm1vg8zfi9p29k8s0daadmv9hv5dvq1a1idmyyqjb6qqb2"; depends=[BiocGenerics nlme]; }; - curatedMetagenomicData = derive2 { name="curatedMetagenomicData"; version="3.8.0"; sha256="19ibfp3b2z8z8mw0blrjrk2dplp7vckwvy6i1jfxfx3rwlia9c62"; depends=[AnnotationHub dplyr ExperimentHub magrittr mia purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr tidyselect TreeSummarizedExperiment]; }; - curatedOvarianData = derive2 { name="curatedOvarianData"; version="1.38.0"; sha256="0jgpp588n9ajda2l8652b20qpqv9w26jsdih6nk8ridvqzjpzbg0"; depends=[affy BiocGenerics]; }; - curatedTBData = derive2 { name="curatedTBData"; version="1.6.0"; sha256="017ii5x449wiv5lpbj6pjnb4aryik0a4fakxk0j5hllflvyq7yvf"; depends=[AnnotationHub ExperimentHub MultiAssayExperiment rlang]; }; - curatedTCGAData = derive2 { name="curatedTCGAData"; version="1.22.2"; sha256="0v6n0xc0vpq30k2s6vrga3063ssqp9i5zjif475i1jhlba798g9x"; depends=[AnnotationHub ExperimentHub HDF5Array MultiAssayExperiment S4Vectors SummarizedExperiment]; }; - davidTiling = derive2 { name="davidTiling"; version="1.40.0"; sha256="0afbmfr4dh7jn7dyg5lk88p8465mli9h4lxk1zcj7xbrx7fy3bbj"; depends=[Biobase GO_db tilingArray]; }; - depmap = derive2 { name="depmap"; version="1.14.0"; sha256="06c3s8b60n6dzapli0aywn8h885771930c3vyckd3vlylzbga2ym"; depends=[AnnotationHub dplyr ExperimentHub]; }; - derfinderData = derive2 { name="derfinderData"; version="2.18.0"; sha256="0i9s8yp2bzjs2rl10x4qkji7pp3mmayah1gsnakpgvhzrjhnxv5i"; depends=[]; }; - diffloopdata = derive2 { name="diffloopdata"; version="1.28.0"; sha256="1wlnbgs3rj2zn0nspdzrqy78wvl3ddm1p639cd3qxhp19wl57s62"; depends=[]; }; - diggitdata = derive2 { name="diggitdata"; version="1.32.0"; sha256="1cc3csrlh5ib8sjl14slcxrkdqdkd4v5sb3l7va17bs6if3kihaf"; depends=[Biobase viper]; }; - dorothea = derive2 { name="dorothea"; version="1.12.0"; sha256="0ca6r65x9g22a8k4mm9na1ri5gzdb25gb5biqz3ai44v5q7abrdq"; depends=[bcellViper decoupleR dplyr magrittr]; }; - dressCheck = derive2 { name="dressCheck"; version="0.38.0"; sha256="0hijz7sdfh5fvkrwyy431004rw7ywmg5zslk7qji3j08f6s28r0h"; depends=[Biobase]; }; - dyebiasexamples = derive2 { name="dyebiasexamples"; version="1.40.0"; sha256="00rl15x97v1jjfpxs5askmqjpax6xpn7dqzllwj27ar5h4bkn375"; depends=[GEOquery marray]; }; - easierData = derive2 { name="easierData"; version="1.6.0"; sha256="0c98qsj7z7pg2g6wy830gzs2yy3bflyy0ddx3yhwyvfa810inl0z"; depends=[AnnotationHub ExperimentHub SummarizedExperiment]; }; - ecoliLeucine = derive2 { name="ecoliLeucine"; version="1.40.0"; sha256="1f08rq7r5v55x105d9g3j3v3hy4gh92fvpkqbrnkyfhb8lj28iha"; depends=[affy ecolicdf]; }; - emtdata = derive2 { name="emtdata"; version="1.8.0"; sha256="1iw4fi8pbbn4702zy9j8dm5iipqdn8r87v7clian15wys607r1nd"; depends=[edgeR ExperimentHub SummarizedExperiment]; }; - epimutacionsData = derive2 { name="epimutacionsData"; version="1.4.0"; sha256="13j3ndwk32pxcxhsw0svgrjxyl4p9fdjipzy20z2zw40z8gs3731"; depends=[]; }; - estrogen = derive2 { name="estrogen"; version="1.46.0"; sha256="0ngh4hq3r3cakcnf0n1zw3cpmskk49s5ccgdi6gif1y556qvriad"; depends=[]; }; - etec16s = derive2 { name="etec16s"; version="1.28.0"; sha256="0ig12q0n59f6p5x5lvf3cifb0psjlgl4hp31jpr8argp39nc3v4p"; depends=[Biobase metagenomeSeq]; }; - ewceData = derive2 { name="ewceData"; version="1.8.0"; sha256="128mkc8j5880j34mmshw3mwgl1gzwfrxpbb0s0m1lla4g01m046g"; depends=[ExperimentHub]; }; - faahKO = derive2 { name="faahKO"; version="1.40.0"; sha256="1f2dj0pgspm8wxfaan3rgpaix825n6hwfj569jh0q865ivz2rwk1"; depends=[xcms]; }; - fabiaData = derive2 { name="fabiaData"; version="1.38.0"; sha256="0jka59dkq44n68m1h4b1yw4v5zknmdkw48vndpbq6v6fna9dhzh9"; depends=[Biobase]; }; - ffpeExampleData = derive2 { name="ffpeExampleData"; version="1.38.0"; sha256="19hdh516jwi4iqlv4g97g2d20xj4vkmca4z2wz34mgsk71dj69zl"; depends=[lumi]; }; - fibroEset = derive2 { name="fibroEset"; version="1.42.0"; sha256="1yhh0f241wghh2lmzr0qbsmw9sdpx7j69bi08spmzm7favbrmgq5"; depends=[Biobase]; }; - fission = derive2 { name="fission"; version="1.20.0"; sha256="0p60mn0dbjj7p2mqdnmpdx7k6nv01rmadipl6nmcqrz1iq3m3vd0"; depends=[SummarizedExperiment]; }; - flowPloidyData = derive2 { name="flowPloidyData"; version="1.26.0"; sha256="12c5gdsz7p7fhwhxdqg8gbj2nh2px16w5mc28crv3ggfawnna3ln"; depends=[]; }; - flowWorkspaceData = derive2 { name="flowWorkspaceData"; version="3.12.0"; sha256="0z4y5bj77jh2xz8wb03vckfs9354c4njf3qqp6k8a4xxrikgl8wv"; depends=[]; }; - fourDNData = derive2 { name="fourDNData"; version="1.0.0"; sha256="08l866mm5wsr1cwhgzvz39ig09icngawpminj09nhdzcwbxiqqhj"; depends=[BiocFileCache GenomicRanges HiCExperiment IRanges S4Vectors]; }; - frmaExampleData = derive2 { name="frmaExampleData"; version="1.36.0"; sha256="0j3pp0iw5l6rq9hmx2a0r6py36wa659fml5y7gpbvg5m7y93375i"; depends=[]; }; - furrowSeg = derive2 { name="furrowSeg"; version="1.28.0"; sha256="0zzqc4yizrwpvhy254i5vdv3qw7bfy0l6sksgcvlh98xwrx5hgps"; depends=[abind dplyr EBImage locfit tiff]; }; - gDNAinRNAseqData = derive2 { name="gDNAinRNAseqData"; version="1.0.0"; sha256="19k0f4xssasiiihw3vyx65fs7gxkk3pqqcs7jb6pc6acjdfgmrwv"; depends=[BiocGenerics ExperimentHub RCurl Rsamtools XML]; }; - gageData = derive2 { name="gageData"; version="2.38.0"; sha256="0c1gvh24kgd3k9dh9syqffbdj9fi0awxdwndfdmwc2f3npnqy27b"; depends=[]; }; - gaschYHS = derive2 { name="gaschYHS"; version="1.38.0"; sha256="1g0ygk4dmzq2b4a3zsi0g9mdrb5n0zlmakgsdban24n4sqw08j3k"; depends=[Biobase]; }; - gcspikelite = derive2 { name="gcspikelite"; version="1.38.0"; sha256="0s6y32c1v750fqzchbzaahy5s0v7il9a4hyy4dk88sx4fxqy1idx"; depends=[]; }; - geneLenDataBase = derive2 { name="geneLenDataBase"; version="1.36.0"; sha256="0aikgafkcc64qnsgzkbzba21inzzlvcrg5gqnbp10n5yl2vqnn22"; depends=[GenomicFeatures rtracklayer]; }; - genomationData = derive2 { name="genomationData"; version="1.32.0"; sha256="07ywg8399xshlvalxzl6g0ahicrw9cn32d9wzxqd956dqqxlrg70"; depends=[]; }; - golubEsets = derive2 { name="golubEsets"; version="1.42.0"; sha256="1x0i0y2y4s2bg6q5lvavphy690295zqs4gadp1c8pj0i5vhi2gr3"; depends=[Biobase]; }; - gpaExample = derive2 { name="gpaExample"; version="1.12.0"; sha256="14ic1j47r3nvv6aps211jrmnr0bjmym07r64wdggnmvim36ma10a"; depends=[]; }; - grndata = derive2 { name="grndata"; version="1.32.0"; sha256="0k0wzslgxbv88z0m0x7z113mhyvwcx1xirxlcg9b9dnqdqx3lzq9"; depends=[]; }; - h5vcData = derive2 { name="h5vcData"; version="2.20.0"; sha256="1axq8gb7989d2sknxgl4ig38klcvjgslvmykflqb5pnb0m9zhi87"; depends=[]; }; - hapmap100khind = derive2 { name="hapmap100khind"; version="1.42.0"; sha256="00ar3bry6np8krsdh3yrvj5in176850r9zpc95d3g6i04fa0cz71"; depends=[]; }; - hapmap100kxba = derive2 { name="hapmap100kxba"; version="1.42.0"; sha256="1b9808njp0x7fz4d15dcnq1la3h4867df62wsjzn61nlqr20gs0s"; depends=[]; }; - hapmap500knsp = derive2 { name="hapmap500knsp"; version="1.42.0"; sha256="1fg1l8m486wqxdh1v37jsv9w4f7mh01c3a750jk0b2jqypg37axx"; depends=[]; }; - hapmap500ksty = derive2 { name="hapmap500ksty"; version="1.42.0"; sha256="144j6z1v19s0fjy94dxyhkd41ayk6jbf0x0jfslcbkxk2nj2jr02"; depends=[]; }; - hapmapsnp5 = derive2 { name="hapmapsnp5"; version="1.42.0"; sha256="1v7ba4h7rpg6f8qsh89sl49g6d4b32fj4mznmj5z2syxsm6c0yyl"; depends=[]; }; - hapmapsnp6 = derive2 { name="hapmapsnp6"; version="1.42.0"; sha256="063wb9snsn2dhvxs425pfy052pd3nyp1ggzczql6vfhjk92invk6"; depends=[]; }; - harbChIP = derive2 { name="harbChIP"; version="1.38.0"; sha256="1bl6px824qa6fy5mlyp9jc1xi5ig1n5disfwgql456fh6lq599cs"; depends=[Biobase Biostrings IRanges]; }; - healthyControlsPresenceChecker = derive2 { name="healthyControlsPresenceChecker"; version="1.4.0"; sha256="0lnfn1rdl782wx65vk08rjgrxzja61yjahhxcv5nks5rqsp12pr1"; depends=[geneExpressionFromGEO GEOquery magrittr xml2]; }; - healthyFlowData = derive2 { name="healthyFlowData"; version="1.38.0"; sha256="0sxjag25xganxhqdksqrjr831xhpinq7l00ayxffqgzpmlblmqfl"; depends=[flowCore]; }; - hgu133abarcodevecs = derive2 { name="hgu133abarcodevecs"; version="1.38.0"; sha256="1v842kg28is91m3w6c8c84hqq1dvn2klgyklg2bd0qppwrc4arav"; depends=[]; }; - hgu133plus2CellScore = derive2 { name="hgu133plus2CellScore"; version="1.20.0"; sha256="17qrw5v6cmpp821ciws8ixigl1a5c6chf6772nk6akkdd939n07g"; depends=[Biobase]; }; - hgu133plus2barcodevecs = derive2 { name="hgu133plus2barcodevecs"; version="1.38.0"; sha256="0s28yvjm41yn4m4xr6d6mc0kyj0ijmd87sbhz1svx9xyackvgrb2"; depends=[]; }; - hgu2beta7 = derive2 { name="hgu2beta7"; version="1.40.0"; sha256="0gav1mhbj4h1dcyfhr4icpahpm2lmpxg3gjxfmbb4jxl78lr0dxp"; depends=[]; }; - humanStemCell = derive2 { name="humanStemCell"; version="0.40.0"; sha256="0ypgcw3j0mbdkxwlr8vzyp90i0a3y8z86a2865v45dgg7nhzw4hp"; depends=[Biobase hgu133plus2_db]; }; - imcdatasets = derive2 { name="imcdatasets"; version="1.8.0"; sha256="16dmzhwlqywiz7q893fj1vc6nq93bv2ssdnldrzrw9q1kmshrczr"; depends=[cytomapper DelayedArray ExperimentHub HDF5Array S4Vectors SingleCellExperiment SpatialExperiment]; }; - kidpack = derive2 { name="kidpack"; version="1.42.0"; sha256="0w40bwwziyz57gcc43gskv3zg86wqm1vz912kxr2rrhn8pjm0zq6"; depends=[Biobase]; }; - leeBamViews = derive2 { name="leeBamViews"; version="1.36.0"; sha256="0l8q3y34i1wbx2gvg8hsd23nylr86z4qldlq5qs7dalm37ifgjad"; depends=[Biobase BSgenome GenomicAlignments GenomicRanges IRanges Rsamtools S4Vectors]; }; - leukemiasEset = derive2 { name="leukemiasEset"; version="1.36.0"; sha256="1m35qrhai1pzl4ca1nmi5gks1r9k36h82pfhlx1d0c0amyamyy91"; depends=[Biobase]; }; - lumiBarnes = derive2 { name="lumiBarnes"; version="1.40.0"; sha256="1bl9j5mn9rjjn11xxlxihdpp5njznmi95r2fddjrbgq230nj83a0"; depends=[Biobase lumi]; }; - lungExpression = derive2 { name="lungExpression"; version="0.38.0"; sha256="02xmln921ak8xx040pl4hvm4dhqzvmgynmqy7a37lfccg3zvrc0q"; depends=[Biobase]; }; - lydata = derive2 { name="lydata"; version="1.26.0"; sha256="0i6xy6wczw6nhj2g07l3z39q8s2fws71gh502cdfg6d30x9ad4i5"; depends=[]; }; - mAPKLData = derive2 { name="mAPKLData"; version="1.32.0"; sha256="1p8q2swiypb3a5q4c6j9y28ddwkj5w6wqm0xsjw4rbvcb7dsbr4c"; depends=[]; }; - mCSEAdata = derive2 { name="mCSEAdata"; version="1.20.1"; sha256="1w5x5j43xyh14ring2y8a2i99bcz3pc5yvr66r493viq24g2254y"; depends=[GenomicRanges]; }; - macrophage = derive2 { name="macrophage"; version="1.16.0"; sha256="02g56sxkj83bp9j2089a5mw342cp8zx55dps8wah0jyb93rh5isg"; depends=[]; }; - mammaPrintData = derive2 { name="mammaPrintData"; version="1.36.0"; sha256="1m9wnj5yg6xsglsg2qsx3igdy7a0wp9zkgpf8ycwgr425dm8fwyi"; depends=[]; }; - maqcExpression4plex = derive2 { name="maqcExpression4plex"; version="1.44.0"; sha256="1qpm40z3sl308b484nn5zkb2vnywrz7br5a070g3f63302hj306s"; depends=[]; }; - marinerData = derive2 { name="marinerData"; version="1.0.0"; sha256="0rsqz0991ykdw8l7yq1sixh6ddvzg0pnn1gyp9mwi2j4vja0w3qc"; depends=[ExperimentHub]; }; - mcsurvdata = derive2 { name="mcsurvdata"; version="1.18.0"; sha256="1qxa32vmc5zqdr48f26bfpxl3aask9isvas9wwc9dcbhivn35d2y"; depends=[AnnotationHub Biobase ExperimentHub]; }; - metaMSdata = derive2 { name="metaMSdata"; version="1.36.0"; sha256="1npbyssyvc4z6agb9m6pb1qkml25kqiirg7fpnc4saa586s2ifk8"; depends=[]; }; - methylclockData = derive2 { name="methylclockData"; version="1.8.1"; sha256="0dsllm09hhxad3bf5l1yj1ajkxjy9ad8apihg3zj7zqdgcvgq64m"; depends=[ExperimentHub ExperimentHubData]; }; - miRNATarget = derive2 { name="miRNATarget"; version="1.38.0"; sha256="0gjhq9wiswxw75a6vm1s9l9jnhlfxp35zz85cwxg6xvcz94w4rx2"; depends=[Biobase]; }; - miRcompData = derive2 { name="miRcompData"; version="1.30.0"; sha256="1qn57qvysmpxq1k4zsv7b45a8bmi9snvkwwng9s267440w0rl0yz"; depends=[]; }; - microRNAome = derive2 { name="microRNAome"; version="1.22.0"; sha256="17dmg9lbf3j305lgyfwazqyxwlkvqxzyzfilq97kki894qyfv85l"; depends=[SummarizedExperiment]; }; - microbiomeDataSets = derive2 { name="microbiomeDataSets"; version="1.8.0"; sha256="1hlh06mpcm92j59cng2zg05qc5jsc7f57n09g5rm1kywn07gqcl9"; depends=[ape BiocGenerics Biostrings ExperimentHub MultiAssayExperiment SummarizedExperiment TreeSummarizedExperiment]; }; - minfiData = derive2 { name="minfiData"; version="0.46.0"; sha256="0q51zc4v785r10d6rcgnh8lwrxbh5k7gz5b7ps5fq4lsrg0ly8fq"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest minfi]; }; - minfiDataEPIC = derive2 { name="minfiDataEPIC"; version="1.26.0"; sha256="0r203iwkfhl6xkpahml98ccm7np16kl4c9jgx5rbi1697smaxwvb"; depends=[IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest minfi]; }; - minionSummaryData = derive2 { name="minionSummaryData"; version="1.30.0"; sha256="15l8wd5bx43hljvsa0g7990amkmcjgdl6z1kkxcwf532ds2ixsv4"; depends=[]; }; - mosaicsExample = derive2 { name="mosaicsExample"; version="1.38.0"; sha256="16rgf7p0dvp5yh56gs1vwcpf57fp3dzcgznwzm8c0mjrxyqfckzz"; depends=[]; }; - mouse4302barcodevecs = derive2 { name="mouse4302barcodevecs"; version="1.38.0"; sha256="0msvj4342g9cnks278jqjaw6jv5bs18briigbix0sglxprqi9s6m"; depends=[]; }; - msPurityData = derive2 { name="msPurityData"; version="1.28.0"; sha256="0r8r108gfin8xaznwfg70ysym6ay4pyy7wg01r0s29iny7h6b625"; depends=[]; }; - msd16s = derive2 { name="msd16s"; version="1.20.0"; sha256="0h5wm56g5ckdkayiqn8jn9p6r87sfpzbl6jj5yxn1rfx06cqd1f5"; depends=[Biobase metagenomeSeq]; }; - msdata = derive2 { name="msdata"; version="0.40.0"; sha256="0p3msawa9xxzjpa7wrwbss8p1caaq8xinzxv26s0dxgdllq24s02"; depends=[]; }; - msigdb = derive2 { name="msigdb"; version="1.8.0"; sha256="1kgsqg1d5r852qas09g6fs0pcmk6jgbb6g983v6iqw19qsiy6jby"; depends=[AnnotationDbi AnnotationHub ExperimentHub GSEABase org_Hs_eg_db org_Mm_eg_db]; }; - msqc1 = derive2 { name="msqc1"; version="1.28.0"; sha256="1c2gslrmzndylag0s9ajdkf4cgfcnfxi1qcqns8zydl28f3jp7kh"; depends=[lattice]; }; - mtbls2 = derive2 { name="mtbls2"; version="1.30.0"; sha256="0k7d3636av6d6mnsb09grzldlhqqzg98dxc5sgghykp03k4mdayk"; depends=[]; }; - muscData = derive2 { name="muscData"; version="1.14.0"; sha256="14j6qy5fi2gyc76mhgrv231srw7s1ljjspmg4r2v7ngwh0klz0bk"; depends=[ExperimentHub SingleCellExperiment]; }; - mvoutData = derive2 { name="mvoutData"; version="1.36.0"; sha256="1hjqgqwg35d4rg920afgfg7ql6w5inr83hycml3lprzch06nrfzk"; depends=[affy Biobase lumi]; }; - nanotubes = derive2 { name="nanotubes"; version="1.16.0"; sha256="1k1j17km2qwc22mn8mskfm895kqy42aazajpch99pi1i892scp4x"; depends=[]; }; - nullrangesData = derive2 { name="nullrangesData"; version="1.6.0"; sha256="114a3pi88p647z2b9k7h9mal1hry5vmq6d8di5x3qhrc8dk2s707"; depends=[ExperimentHub GenomicRanges InteractionSet]; }; - oct4 = derive2 { name="oct4"; version="1.16.0"; sha256="18vrx4h6czh03hm5q0gcs3bhyw780shmy78a5h3jldr04wkd5avk"; depends=[]; }; - octad_db = derive2 { name="octad.db"; version="1.2.0"; sha256="01wfapq1qsh3wirkl4j1bx1jk1abld19945w6cyz18n66gf4l70j"; depends=[ExperimentHub]; }; - optimalFlowData = derive2 { name="optimalFlowData"; version="1.12.0"; sha256="1ipn3dhikl02jjr3ifg6wqjgx6x844z3qzj8c41zf6sn6xrmx2ax"; depends=[]; }; - pRolocdata = derive2 { name="pRolocdata"; version="1.38.0"; sha256="0mylaiwx2k364qlqqmb8fmc8r8m9d2qyjw58pg9jcbdy9nzwsv7m"; depends=[Biobase MSnbase]; }; - parathyroidSE = derive2 { name="parathyroidSE"; version="1.38.0"; sha256="18w0gi7950wwbx68cn0hq5q57pga5n7b6gga1p8vaxs0fjca4fi9"; depends=[SummarizedExperiment]; }; - pasilla = derive2 { name="pasilla"; version="1.28.0"; sha256="1bqmz71sd9fdlr5yayqvc65mi4rhgakzqwlcs5jryb2qnmyrczhm"; depends=[DEXSeq]; }; - pasillaBamSubset = derive2 { name="pasillaBamSubset"; version="0.38.0"; sha256="123dr64a1a1xw9z64x7sfwd85qxffmiv3lydimlbay121sc0kv2m"; depends=[]; }; - pcxnData = derive2 { name="pcxnData"; version="2.22.0"; sha256="16mq3h8gr71cs7xi90zqaybvp92479bk8qyk5pylidfp5x72y8zr"; depends=[]; }; - pd_atdschip_tiling = derive2 { name="pd.atdschip.tiling"; version="0.38.0"; sha256="0ppvjrdqj8aa90b10hwcr1ihpgyjik8pbhqinaqxq5bvxw0826pw"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pepDat = derive2 { name="pepDat"; version="1.20.0"; sha256="1v0kzvxy21pl8fs05irdhvgxdicav0i00m966x8ra21ixczi1dfw"; depends=[GenomicRanges]; }; - plotgardenerData = derive2 { name="plotgardenerData"; version="1.6.0"; sha256="17aiha2xi7d8jyrnmdyakxd9gh2pcq9rb97gr1w87cjifv64ipn4"; depends=[]; }; - prebsdata = derive2 { name="prebsdata"; version="1.36.0"; sha256="11j6vz505d8pa9vx64rwask3r89wsv6r7f646lahzw6i4ingpxz4"; depends=[]; }; - preciseTADhub = derive2 { name="preciseTADhub"; version="1.8.0"; sha256="1nw0f58y6h207sxnhfkqchrnsshkf4wf304ygc2iv7i9xwz1klg5"; depends=[ExperimentHub]; }; - prostateCancerCamcap = derive2 { name="prostateCancerCamcap"; version="1.28.0"; sha256="0nb1rn5v4w6n1vxpg88cyxfw11lw4q5lipm0lxn076492lqzyl56"; depends=[Biobase]; }; - prostateCancerGrasso = derive2 { name="prostateCancerGrasso"; version="1.28.0"; sha256="0apwvr094ka9vars72ikcl8n9j28fnsgxjybmffcg3daindk5980"; depends=[Biobase]; }; - prostateCancerStockholm = derive2 { name="prostateCancerStockholm"; version="1.28.0"; sha256="0jsmrizdczhz7nz231rdj1cjfd3ddadpkqyknm53im3gb5k047kr"; depends=[Biobase]; }; - prostateCancerTaylor = derive2 { name="prostateCancerTaylor"; version="1.28.0"; sha256="09bcf4gwrl217xxwp3x2cyl8h9ynkz38v9lvidyf5646rm2mga0d"; depends=[Biobase]; }; - prostateCancerVarambally = derive2 { name="prostateCancerVarambally"; version="1.28.0"; sha256="0gl9l7nzccdfpa5lbvrhv41r6iy97kz82wrd9d04mgykapw4c0xm"; depends=[Biobase]; }; - ptairData = derive2 { name="ptairData"; version="1.8.0"; sha256="0nr2v48iqfw7x8rv1vd7lrlcjnh7jzvwnyfhvvjq6gsc38bij2ln"; depends=[rhdf5 signal]; }; - pumadata = derive2 { name="pumadata"; version="2.36.0"; sha256="1409lc2g2vrr4bfd26d0rppwd577hv6qdvfxw3m4q6w8xvzjc3lg"; depends=[Biobase oligo puma]; }; - pwrEWAS_data = derive2 { name="pwrEWAS.data"; version="1.14.0"; sha256="1bldyvjsv5wwzasg9sbsivyi7m2ypc17mqjglsl22fjkykm92h4s"; depends=[ExperimentHub]; }; - qPLEXdata = derive2 { name="qPLEXdata"; version="1.18.0"; sha256="1zzrsj7xdp0dzv1irj8gkar6a815253lna79vcffq7i01nx62whr"; depends=[dplyr knitr MSnbase qPLEXanalyzer]; }; - rRDPData = derive2 { name="rRDPData"; version="1.20.0"; sha256="0rby7h4xzsxjrs8s2vzfapwh01rxddickg0cxj1n0bpirmc1bn6i"; depends=[rRDP]; }; - rcellminerData = derive2 { name="rcellminerData"; version="2.22.0"; sha256="0gk037ksn7wbwbp9nvgd5kacy671fwy13sscbv73ixmxkavkn5ls"; depends=[Biobase]; }; - restfulSEData = derive2 { name="restfulSEData"; version="1.22.1"; sha256="0d2dlg1cswyxsiwd4482mam3l1dcsabdrv164yrz4s63g18jgspy"; depends=[DelayedArray ExperimentHub HDF5Array SummarizedExperiment]; }; - rheumaticConditionWOLLBOLD = derive2 { name="rheumaticConditionWOLLBOLD"; version="1.38.0"; sha256="0bnrkq6impb61fj6991290bji5dba4j11favykws668lj113wk9p"; depends=[]; }; - sampleClassifierData = derive2 { name="sampleClassifierData"; version="1.24.0"; sha256="0rm9q82iiii2rnq9pqy7a0c7pbw2vwwr5132vzvsr5x7q2xfwf8v"; depends=[SummarizedExperiment]; }; - scATAC_Explorer = derive2 { name="scATAC.Explorer"; version="1.6.0"; sha256="0y9ykfl20ffww51n45i8ljg3f2jz0lc20qp81q0q3rwy7wjz28iv"; depends=[BiocFileCache data_table Matrix S4Vectors SingleCellExperiment]; }; - scMultiome = derive2 { name="scMultiome"; version="1.0.1"; sha256="1i2xh1vqz9388fwll639ilcrl47wgi8wfyfs416znn494qiwbbv2"; depends=[AnnotationHub AzureStor checkmate DelayedArray ExperimentHub GenomicRanges HDF5Array MultiAssayExperiment rhdf5 S4Vectors SingleCellExperiment SummarizedExperiment]; }; - scRNAseq = derive2 { name="scRNAseq"; version="2.14.0"; sha256="0ch3fg4vzzqnk6l4m1clfgmh6jighqlnqzwh7w66hlkyjknpbbjd"; depends=[AnnotationDbi AnnotationHub BiocGenerics ensembldb ExperimentHub GenomicFeatures GenomicRanges S4Vectors SingleCellExperiment SummarizedExperiment]; }; - scTHI_data = derive2 { name="scTHI.data"; version="1.12.0"; sha256="1pfglyb12k5qv2xqbkzn87b4gg3v854mkw81k0wchmvqzr5v5m9h"; depends=[]; }; - scanMiRData = derive2 { name="scanMiRData"; version="1.6.0"; sha256="13krdxff0xwv179swy2dqfgfzpnp41d2khxm002hj5h4ra48p4gz"; depends=[scanMiR]; }; - scpdata = derive2 { name="scpdata"; version="1.8.0"; sha256="09xncwdky121lsz09k24xdy7qwmcrkx3685qcfb34gwszff9m5d3"; depends=[AnnotationHub ExperimentHub QFeatures S4Vectors SingleCellExperiment]; }; - seq2pathway_data = derive2 { name="seq2pathway.data"; version="1.32.0"; sha256="0a9jfkdx26ivzmmhwpn8qw5v2vq2mvnz43ri1y22w3248dhl4fzc"; depends=[]; }; - seqCNA_annot = derive2 { name="seqCNA.annot"; version="1.36.0"; sha256="18z9f7bmwgwz0s5q2g5ggrfpikwkwjwj8vpllbfv0nw2ixi4c0vj"; depends=[]; }; - seqc = derive2 { name="seqc"; version="1.34.0"; sha256="0dfg8br36avrk1wryxygq1crpfafy3y2k64mxak6333lpl6ghrfc"; depends=[Biobase]; }; - serumStimulation = derive2 { name="serumStimulation"; version="1.36.0"; sha256="1a5r0qb2mxznc5y324jb6v7n72bwz055h4qabf0y662aqsfbrwh8"; depends=[]; }; - sesameData = derive2 { name="sesameData"; version="1.18.0"; sha256="1fvxs5n6bj2j0k3vgnaiksshkaxw7fmx6k22rjd3fsqg3cz60fm6"; depends=[AnnotationHub ExperimentHub GenomeInfoDb GenomicRanges IRanges readr S4Vectors stringr]; }; - seventyGeneData = derive2 { name="seventyGeneData"; version="1.36.1"; sha256="1dfg6qh6m869ylixvpaq2cb0d5wigncdayacj4gmj3xs3zxgf3zs"; depends=[]; }; - shinyMethylData = derive2 { name="shinyMethylData"; version="1.20.0"; sha256="03apywnbp4j3dhaba1ardw7wmr75py2lbjm9gfmn624fcvvs5zsm"; depends=[]; }; - signatureSearchData = derive2 { name="signatureSearchData"; version="1.14.0"; sha256="1bs3vqj67ppwl9rdkkzh2a65cj0lmss22m2gmahdj5903sdm8fbd"; depends=[affy Biobase dplyr ExperimentHub limma magrittr R_utils rhdf5]; }; - simpIntLists = derive2 { name="simpIntLists"; version="1.36.0"; sha256="1jma1gnpm8v345li6k4brjr29x5x06f33x50s6ashx28lwzf0hwg"; depends=[]; }; - spatialDmelxsim = derive2 { name="spatialDmelxsim"; version="1.6.1"; sha256="0rid9gcy0l4fj8pdmjyspjk2bcq2kl6nni121nnkrhwcy878p1ri"; depends=[ExperimentHub SummarizedExperiment]; }; - spatialLIBD = derive2 { name="spatialLIBD"; version="1.12.0"; sha256="04g0qjxccws1pim89kb4mpxh6n26snmrh7khfp89wxkx52bj8yrd"; depends=[AnnotationHub benchmarkme BiocFileCache BiocGenerics cowplot DT edgeR ExperimentHub fields GenomicRanges ggplot2 golem IRanges jsonlite limma magick Matrix paletteer plotly png RColorBrewer rtracklayer S4Vectors scater scuttle sessioninfo shiny shinyWidgets SingleCellExperiment SpatialExperiment statmod SummarizedExperiment tibble viridisLite]; }; - spqnData = derive2 { name="spqnData"; version="1.12.0"; sha256="1l63w4ddjqp0g9bkwhyaggj9j3iva0xvwnnv5jc51dzqgg4kyffx"; depends=[SummarizedExperiment]; }; - stemHypoxia = derive2 { name="stemHypoxia"; version="1.36.0"; sha256="15mw35q2paq5wmxix9k685xxrbm0x0cn80nvk3i3mw82h829jmnm"; depends=[]; }; - stjudem = derive2 { name="stjudem"; version="1.40.0"; sha256="13c6p9fp2z5d3imwn31baba8xf9zwchcccrrg6qbaafsj2ajw8il"; depends=[]; }; - synapterdata = derive2 { name="synapterdata"; version="1.38.0"; sha256="09jd57gw331zzb55qwb5gr11kd5sn5dvwrd9abaf1wgf3ykhkb1m"; depends=[synapter]; }; - systemPipeRdata = derive2 { name="systemPipeRdata"; version="2.4.0"; sha256="01xj4n4n3j0h14ijh86gnnvb004hgnd8j4mv4ds8gcl17j8n3zj1"; depends=[BiocGenerics Biostrings jsonlite remotes]; }; - tartare = derive2 { name="tartare"; version="1.14.0"; sha256="18p33a76x39zyx4yracpxira5hr7kibryp52dwy4w6wmhdid6kc8"; depends=[AnnotationHub ExperimentHub]; }; - timecoursedata = derive2 { name="timecoursedata"; version="1.10.0"; sha256="0s60dczz2bkagh8s2xy1lyq08am3mqzsimxh4j3arr2q6vkfip83"; depends=[SummarizedExperiment]; }; - tinesath1cdf = derive2 { name="tinesath1cdf"; version="1.38.0"; sha256="0dnf2yqdjkc20sydiskz2c1lxlfrihyjmiw0wsz945v8sxfb2l38"; depends=[]; }; - tinesath1probe = derive2 { name="tinesath1probe"; version="1.38.0"; sha256="159pczl31r2gb6cpkglqkcqjq9sq06m0f0h6c7p6bsgmi5qji9dv"; depends=[AnnotationDbi]; }; - tissueTreg = derive2 { name="tissueTreg"; version="1.20.0"; sha256="1wz8qz0znvf2nk2im270djwbgq6b4jhx6qmx3chmibriszgs3vxm"; depends=[]; }; - tofsimsData = derive2 { name="tofsimsData"; version="1.28.0"; sha256="0zdb54103i17ns1z2rwgqwnbbdaysfkw7dvnb0jny1zb4a10mzhi"; depends=[]; }; - topdownrdata = derive2 { name="topdownrdata"; version="1.22.0"; sha256="0k9mpfsrfnyjwlxkv4c58pnwwf93qp50c2s5azrcfncx2z3kb6hn"; depends=[topdownr]; }; - tuberculosis = derive2 { name="tuberculosis"; version="1.6.0"; sha256="1lqvypy9xd4qqvq5impfai6l09mpx4m0ypnd3h6m493ymqgvf2gz"; depends=[AnnotationHub dplyr ExperimentHub magrittr purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; }; - tweeDEseqCountData = derive2 { name="tweeDEseqCountData"; version="1.38.0"; sha256="11jiq5irarmmkhxng8xxhagjrcz2myf9hgyqqkswfm9ffm5yc618"; depends=[Biobase]; }; - tximportData = derive2 { name="tximportData"; version="1.28.0"; sha256="1gnzaifkxiawp902bpdkrxnk892vvxrg2jqxz2cfjaaxzfh12fxq"; depends=[]; }; - vulcandata = derive2 { name="vulcandata"; version="1.22.0"; sha256="0ll5mi8flpisg7ib0sv3w4ndmlkypq3rm3cy55vk8bsl5j37fc2s"; depends=[]; }; - xcoredata = derive2 { name="xcoredata"; version="1.4.0"; sha256="023xj8v628v2sddwmv24vsqjgfczgiqvkfqfxmlnz00jbb6f8vfs"; depends=[ExperimentHub]; }; - yeastCC = derive2 { name="yeastCC"; version="1.40.0"; sha256="0k15h5jk3b14d46nf3rrh7jkdf4b0mr6z2l41xy83lhhjkrs543l"; depends=[Biobase]; }; - yeastExpData = derive2 { name="yeastExpData"; version="0.46.0"; sha256="1k0k5cvfyx82p91qkpsxdb1rzdnz74ikna6pd8rc41fmnwbls3ph"; depends=[graph]; }; - yeastGSData = derive2 { name="yeastGSData"; version="0.38.0"; sha256="0fjppy226cdg97wb8vfrsfmnv7mmygm8slk546r4avn4r5vim7i2"; depends=[]; }; - yeastNagalakshmi = derive2 { name="yeastNagalakshmi"; version="1.36.0"; sha256="10iir6jkvzk081mr8snad250rnsfmchrq12har97y4gg12c2928v"; depends=[]; }; - yeastRNASeq = derive2 { name="yeastRNASeq"; version="0.38.0"; sha256="0z9x93lc5sfashiclmd7dz7mvb4kp1dc0g8nqf68jspahxgzf1cs"; depends=[]; }; - zebrafishRNASeq = derive2 { name="zebrafishRNASeq"; version="1.20.0"; sha256="0wcmawzc5gc6s6fvwy490ifhhbfzdzii05719in080m0yv2bc74h"; depends=[]; }; + ALL = derive2 { name="ALL"; version="1.44.0"; sha256="1ny5xv338a91gc88a1y5rrd27iawrrlmxhkidvc7xdsbrwd4flkc"; depends=[Biobase]; }; + ALLMLL = derive2 { name="ALLMLL"; version="1.42.0"; sha256="1sq2j4gq78d68lqlqnd6nxi66gngzqyxicsyv85xp7dhcl59fwbm"; depends=[affy]; }; + ARRmData = derive2 { name="ARRmData"; version="1.38.0"; sha256="0hlhc7kvw9n1bnbzingd1475qwivpx64sccnigdij8xdcm1mb4s7"; depends=[]; }; + ASICSdata = derive2 { name="ASICSdata"; version="1.22.0"; sha256="01xm27j9c37vqpqz4d9v3bsji1z6ppgf64jja5dd4rz8i3gx9f68"; depends=[]; }; + Affyhgu133A2Expr = derive2 { name="Affyhgu133A2Expr"; version="1.38.0"; sha256="1rvw1z3i8jz0x4ca2fy4xg2z97ffalh15prsd38sz4chj9cwybxc"; depends=[]; }; + Affyhgu133Plus2Expr = derive2 { name="Affyhgu133Plus2Expr"; version="1.36.0"; sha256="10jilz65xba8a43zdvxksll9jpba9a1nj5w266d7laws056m4bh9"; depends=[]; }; + Affyhgu133aExpr = derive2 { name="Affyhgu133aExpr"; version="1.40.0"; sha256="1kdp39k2s35jb3wp4qqm0lbrz94dxz1s9yygv8frfc70xv4hh7af"; depends=[]; }; + AffymetrixDataTestFiles = derive2 { name="AffymetrixDataTestFiles"; version="0.40.0"; sha256="0h8i38qh3krw02v5x4rybh0pmfriy5l3ji6ahk2j0hgjfgq55z5b"; depends=[]; }; + Affymoe4302Expr = derive2 { name="Affymoe4302Expr"; version="1.40.0"; sha256="01zgyp6yy980iyqan7f9qiv7pqzkr4cjli9q5ncig085afp2j88r"; depends=[]; }; + AmpAffyExample = derive2 { name="AmpAffyExample"; version="1.42.0"; sha256="028473p5k69vmm8nh0qpmq30cyjcjaccclnsc7crr6brg2xjzcb6"; depends=[affy]; }; + AneuFinderData = derive2 { name="AneuFinderData"; version="1.30.0"; sha256="03kp8qkqy2wph7lbzawgnh83qjm31ih1jp986qwphfhkfk125wg0"; depends=[]; }; + AshkenazimSonChr21 = derive2 { name="AshkenazimSonChr21"; version="1.32.0"; sha256="0yin4q6bjhbh6a6xb62ac5w0kjb23y3kslrpkf9prr1cz42kvbjx"; depends=[]; }; + AssessORFData = derive2 { name="AssessORFData"; version="1.20.0"; sha256="0lp80w5msdisic9j827wq7gsi9v6vnrchrlcmr2h5vd26plia98x"; depends=[DECIPHER]; }; + BeadArrayUseCases = derive2 { name="BeadArrayUseCases"; version="1.40.0"; sha256="052r8snjwqzn49gjwv1fv5vhwl14vcmzwjxb4jgsbnb14wyhiliy"; depends=[beadarray GEOquery limma]; }; + BeadSorted_Saliva_EPIC = derive2 { name="BeadSorted.Saliva.EPIC"; version="1.10.0"; sha256="088c6ikr7cslpx8yx89d3y00zigy6c21qa1m3dlrynghh7z8xi8w"; depends=[ExperimentHub minfi]; }; + BioImageDbs = derive2 { name="BioImageDbs"; version="1.10.0"; sha256="1xgm9n01if7rb6lsgj4cg5dbjl8kq6zvkj4324vrwj1c1mdaa9nv"; depends=[animation AnnotationHub EBImage einsum ExperimentHub filesstrings magick magrittr markdown rmarkdown]; }; + BioPlex = derive2 { name="BioPlex"; version="1.8.0"; sha256="0wwsbv4kyi67favswb5jrcgjv6a02s8gvwc23918y0rlcmkx07m7"; depends=[BiocFileCache GenomeInfoDb GenomicRanges GEOquery graph SummarizedExperiment]; }; + BloodCancerMultiOmics2017 = derive2 { name="BloodCancerMultiOmics2017"; version="1.22.0"; sha256="1ya62fx76ifnbdbws51nw544n12sk4a35qichfc54v0ffbz0n38c"; depends=[beeswarm Biobase DESeq2 devtools dplyr ggdendro ggplot2 glmnet gtable ipflasso RColorBrewer reshape2 scales SummarizedExperiment survival tibble]; }; + CCl4 = derive2 { name="CCl4"; version="1.40.0"; sha256="02fw0c7yy6vch31a726fpn163mi5zj13jvrpczqqshb2wz2qs58c"; depends=[Biobase limma]; }; + CLL = derive2 { name="CLL"; version="1.42.0"; sha256="10l2a562l6hx32sxmvy8z59shq87v770rrh2fhddnj06dpx6n6cf"; depends=[affy Biobase]; }; + CLLmethylation = derive2 { name="CLLmethylation"; version="1.22.0"; sha256="16k05g98j2zs8n827kvgishzcj0zcx12cwzvgznzjrwp56dl72xs"; depends=[ExperimentHub SummarizedExperiment]; }; + COHCAPanno = derive2 { name="COHCAPanno"; version="1.38.0"; sha256="0f85l5alhzb14p30pmk11lv0wn6n4nsx8l9pc545fkwqdm5bsqh3"; depends=[]; }; + CONFESSdata = derive2 { name="CONFESSdata"; version="1.30.0"; sha256="1gjsbrrz06qsa0lwjiil0qprhiajyy7im5wh6xks0ifs8rl9f9y4"; depends=[]; }; + COPDSexualDimorphism_data = derive2 { name="COPDSexualDimorphism.data"; version="1.38.0"; sha256="1mkxf577xa7k1cflrwbdngj6kfhdz2a1dg04x849zm6ahmd3x9vf"; depends=[]; }; + COSMIC_67 = derive2 { name="COSMIC.67"; version="1.38.0"; sha256="0c4nmzdhg2mam134j5p7g5h4g2f08aqj429b03cz83znqy4k25vl"; depends=[GenomicRanges SummarizedExperiment VariantAnnotation]; }; + CRCL18 = derive2 { name="CRCL18"; version="1.22.0"; sha256="1wa9988sv5maml0v0n893m5vf773z0z530dpp5cjk02cd40npcrn"; depends=[Biobase]; }; + CardinalWorkflows = derive2 { name="CardinalWorkflows"; version="1.34.0"; sha256="0cyzzyki6y2a7m4w7pk7x532a0i539irmpxbba3zs05cjs3213sb"; depends=[Cardinal]; }; + CellMapperData = derive2 { name="CellMapperData"; version="1.28.0"; sha256="12mx1m4lm51y8pazmhrd8ickvvpa2sm9cg2znhs6pzmgc5bj09dx"; depends=[CellMapper ExperimentHub]; }; + ChAMPdata = derive2 { name="ChAMPdata"; version="2.34.0"; sha256="175vsg2bh578fdrdchcma5q3jq7cfxa8b7g8954xv6fxrwcj0ffz"; depends=[BiocGenerics GenomicRanges]; }; + ChIC_data = derive2 { name="ChIC.data"; version="1.22.0"; sha256="1akqpqw9ydf23whr346psciyyp9c3r0rsas1rkdkf8g5wrcj9vhk"; depends=[caret genomeIntervals randomForest]; }; + ChIPXpressData = derive2 { name="ChIPXpressData"; version="1.40.0"; sha256="0i96lkgkzssrsa0gnc5l4f9j4x07cvq4s019v3b2fm5s288lvsnj"; depends=[bigmemory]; }; + ChIPexoQualExample = derive2 { name="ChIPexoQualExample"; version="1.26.0"; sha256="1v35xq0a58kf0nabv3v6aiz9cd3gvwv0asmvq27ha0w1ngwd0dzk"; depends=[]; }; + CluMSIDdata = derive2 { name="CluMSIDdata"; version="1.18.0"; sha256="0xahy0l8b8c7xgg6481vhliiis63brh3rszaj5d1f7sjbgzj7ahs"; depends=[]; }; + CoSIAdata = derive2 { name="CoSIAdata"; version="1.2.0"; sha256="07x44vn6r1d0ixfzx9h3rzzn9gjjci59c41xhqn2b3k6f5c7fa9r"; depends=[ExperimentHub]; }; + ConnectivityMap = derive2 { name="ConnectivityMap"; version="1.38.0"; sha256="0ixvmkyps62f10c0s4z0jas2106hnvijknai6abial6i3plffnsc"; depends=[]; }; + CopyNeutralIMA = derive2 { name="CopyNeutralIMA"; version="1.20.0"; sha256="11l994nhi813qs1vmrqjgclw11k5hrsmcrlj5x5wqmqmnjjw1dsy"; depends=[ExperimentHub Rdpack]; }; + CopyhelpeR = derive2 { name="CopyhelpeR"; version="1.34.0"; sha256="1zfsxi65lln93fb87l6fgp7vxldb4fvnf95h91dl424xyq6qjp1h"; depends=[]; }; + DAPARdata = derive2 { name="DAPARdata"; version="1.32.0"; sha256="1bf8sv9fpp9mpyb5r83a6r2b92d5nc0gwiys2avd0nlmzjddj4jw"; depends=[MSnbase]; }; + DExMAdata = derive2 { name="DExMAdata"; version="1.10.0"; sha256="1a2hrvbkhpwmjha0iwd17xv60d1cdl7iswc942bcac80mn6sw305"; depends=[Biobase]; }; + DLBCL = derive2 { name="DLBCL"; version="1.42.1"; sha256="0an4g45977knk2qsvwjjm66l7rrb26pbk8sbb1zjvmrqym1qviqj"; depends=[Biobase graph]; }; + DMRcatedata = derive2 { name="DMRcatedata"; version="2.20.0"; sha256="07gkhal6rhj9b4yasmb3dfix38cd99p2bf79agl8vbrmzd0mjvhc"; depends=[ExperimentHub GenomicFeatures Gviz IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 plyr readxl rtracklayer]; }; + DNAZooData = derive2 { name="DNAZooData"; version="1.2.0"; sha256="0d5466b830s82laamig1rw0p0n6i4npb11iyziv1sfvs4y8pbhl8"; depends=[BiocFileCache HiCExperiment rjson S4Vectors]; }; + DeSousa2013 = derive2 { name="DeSousa2013"; version="1.38.0"; sha256="1xjygkr8rc1m9sv5bwph3wdf9hhcfdw8zji547nw0ayrg5d49689"; depends=[affy AnnotationDbi Biobase cluster ConsensusClusterPlus frma frmaTools gplots hgu133plus2_db hgu133plus2frmavecs pamr rgl ROCR siggenes survival sva]; }; + DmelSGI = derive2 { name="DmelSGI"; version="1.34.0"; sha256="1qsvw7jrn070yfrgrkw9wsdb05g8ai5hmcqmyr78qs5qny0cz919"; depends=[abind gplots igraph knitr limma rhdf5 TSP]; }; + DonaPLLP2013 = derive2 { name="DonaPLLP2013"; version="1.40.0"; sha256="0pxxg6rkdgafxj71mvlbm14vzv414hfh2p24rhyby7glrkzh2vq0"; depends=[EBImage]; }; + DropletTestFiles = derive2 { name="DropletTestFiles"; version="1.12.0"; sha256="0a68xd9ks83a13s1cckmhrc50ijp7dw19yjf37v253q50xjp0z03"; depends=[AnnotationHub ExperimentHub S4Vectors]; }; + DrugVsDiseasedata = derive2 { name="DrugVsDiseasedata"; version="1.38.0"; sha256="03g6syilb9v9cr2snh5w02ng6drff5i86drbmhv24yabwfgp3ndi"; depends=[]; }; + DuoClustering2018 = derive2 { name="DuoClustering2018"; version="1.20.0"; sha256="0248jc4frjwbv5vq0483s2flbrnd70x4bkad7aphfxvrk897sn9v"; depends=[dplyr ExperimentHub ggplot2 ggthemes magrittr mclust purrr reshape2 tidyr viridis]; }; + DvDdata = derive2 { name="DvDdata"; version="1.38.0"; sha256="16352h34az5sjq0bfgx9qs9njkn3nqws584cm1yydh2v60fclv63"; depends=[]; }; + EGSEAdata = derive2 { name="EGSEAdata"; version="1.30.0"; sha256="0m281qwvz1cdfjf605czammw107x23pjpqh1adx5rvacpzgd8gli"; depends=[]; }; + ELMER_data = derive2 { name="ELMER.data"; version="2.26.0"; sha256="0vwzj98pds0n3wc74y84d8srb1rvvf7kn7mjy4zf4d0qrp92sa94"; depends=[GenomicRanges]; }; + EatonEtAlChIPseq = derive2 { name="EatonEtAlChIPseq"; version="0.40.0"; sha256="06mzals24cc4fl5j2w8mwa1s7q98qm80g7gnr5rz4hj66kmiak94"; depends=[GenomicRanges rtracklayer ShortRead]; }; + EpiMix_data = derive2 { name="EpiMix.data"; version="1.4.0"; sha256="15qc8jjbv6b4nxszrj8lkj6cmbvvxlvknksp5pl13s3y176gm4d5"; depends=[ExperimentHub]; }; + FANTOM3and4CAGE = derive2 { name="FANTOM3and4CAGE"; version="1.38.0"; sha256="01qz41q2cw4g7yg4nj7dlqsw6p8bh7dvm22a0vgp5dpm2pjagh15"; depends=[]; }; + FIs = derive2 { name="FIs"; version="1.30.0"; sha256="0pnw0p2n9r1r0a7b1g32s7s2abbvdc976igdf48agkmilkhzpbb4"; depends=[]; }; + FieldEffectCrc = derive2 { name="FieldEffectCrc"; version="1.12.0"; sha256="13xzypr95v5b3kynfn45b7rpg7kd0gcqmx3ap377plqs42nc7pa6"; depends=[AnnotationHub BiocStyle DESeq2 ExperimentHub RUnit SummarizedExperiment]; }; + Fletcher2013a = derive2 { name="Fletcher2013a"; version="1.38.0"; sha256="04rvri7hcc5qd29c0xbkvjylh2x9flk7hf8rngd01fbhk9myxsaj"; depends=[Biobase gplots limma VennDiagram]; }; + Fletcher2013b = derive2 { name="Fletcher2013b"; version="1.38.0"; sha256="1zp7wafibklwc7gr827yk1m6630c4r11nvy1i8jjhriqrjd4hnpn"; depends=[Fletcher2013a igraph RColorBrewer RedeR RTN]; }; + FlowSorted_Blood_450k = derive2 { name="FlowSorted.Blood.450k"; version="1.40.0"; sha256="08xli4a24kkyy5q1ka0vyrpk11yfkyp0gxbs0k8khycppsq9s9sn"; depends=[minfi]; }; + FlowSorted_Blood_EPIC = derive2 { name="FlowSorted.Blood.EPIC"; version="2.6.0"; sha256="0vfx1kpy02640nkkkpksisznybv0xb6jkvvkwsybsggcr2rdkl89"; depends=[AnnotationHub ExperimentHub genefilter minfi nlme quadprog S4Vectors SummarizedExperiment]; }; + FlowSorted_CordBlood_450k = derive2 { name="FlowSorted.CordBlood.450k"; version="1.30.0"; sha256="04fx8mc21lflbxdz7fgz0jl30jk4gd09qqn5a654jlqhllnkg9rj"; depends=[minfi]; }; + FlowSorted_CordBloodCombined_450k = derive2 { name="FlowSorted.CordBloodCombined.450k"; version="1.18.0"; sha256="0gl0dwhabdik17al1f1zq2vhg3bgbirxmsa1lxfv97vq08nqfshl"; depends=[AnnotationHub ExperimentHub IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi SummarizedExperiment]; }; + FlowSorted_CordBloodNorway_450k = derive2 { name="FlowSorted.CordBloodNorway.450k"; version="1.28.0"; sha256="16hrhakaxhhilfy5gb0yrwijww8ph20i3qnfkrhhz6gjqh0iyri2"; depends=[minfi]; }; + FlowSorted_DLPFC_450k = derive2 { name="FlowSorted.DLPFC.450k"; version="1.38.0"; sha256="0dj0gcz8mfd0ilihhysrbrzbkvfpwy1dx56g4dsizkg0k6aa8nha"; depends=[minfi]; }; + GIGSEAdata = derive2 { name="GIGSEAdata"; version="1.20.0"; sha256="0qisi43rbjg9y2fglkri3bb1wxn4rcylhlidw2ml4bl7d36rfxdz"; depends=[]; }; + GSBenchMark = derive2 { name="GSBenchMark"; version="1.22.0"; sha256="03ccpc69k0i0pffw0x0f49h71saz68chyppa8ncpyb5aj4lxp2gb"; depends=[]; }; + GSE103322 = derive2 { name="GSE103322"; version="1.8.0"; sha256="018k8vkyr0cvycvkihkajf709jsw0y9mhf8yamzc72x5mwazwhym"; depends=[Biobase GEOquery]; }; + GSE13015 = derive2 { name="GSE13015"; version="1.10.0"; sha256="1jc40g1gxz7rcxcgx11blx9li3fpa605rzs9k2glaglrp373r7dk"; depends=[Biobase GEOquery preprocessCore SummarizedExperiment]; }; + GSE159526 = derive2 { name="GSE159526"; version="1.8.0"; sha256="0z8aywaihmrzfn0pzm5z7pxkpmkrar4090wavvy4vzkqbzdicv8r"; depends=[]; }; + GSE62944 = derive2 { name="GSE62944"; version="1.30.0"; sha256="03wy4jjg6fh1fckmy0fqs776b3mhvrksk7hgkrjg7hr7p9b9dxwp"; depends=[Biobase GEOquery]; }; + GSVAdata = derive2 { name="GSVAdata"; version="1.38.0"; sha256="1a9kspbmsnsrisy5xp5r3s1l7fz34v7riyiqn22hlc87zmnj7y5q"; depends=[Biobase GSEABase hgu95a_db]; }; + GWASdata = derive2 { name="GWASdata"; version="1.40.0"; sha256="0lprcr2r0qzi7pa9pl6cp21z7vkjpn0d6ynnbbzji9ga82hd2njq"; depends=[GWASTools]; }; + GenomicDistributionsData = derive2 { name="GenomicDistributionsData"; version="1.10.0"; sha256="1c9pqmdnnpm80zzsbl3j66xdwb3kzn7jkisx31sn5jaxzc660jc4"; depends=[AnnotationFilter AnnotationHub BSgenome data_table ensembldb ExperimentHub GenomeInfoDb GenomicFeatures GenomicRanges]; }; + GeuvadisTranscriptExpr = derive2 { name="GeuvadisTranscriptExpr"; version="1.30.0"; sha256="12253pncfqvq7c1ajkdgfn4f861w2zk3j6p5xyra7c0d0z47a2b6"; depends=[]; }; + HCAData = derive2 { name="HCAData"; version="1.18.0"; sha256="1rd1qra8g7dn9pg2mhh2j40p7p6ny838n4w6mx5ryw4xky95lf41"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; + HCATonsilData = derive2 { name="HCATonsilData"; version="1.0.0"; sha256="1h5hrfslhyiqc855bb23rz9hahnpcy47h2lz1k0dj8glrjldq0jp"; depends=[base64enc ExperimentHub HDF5Array htmltools rmarkdown S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; + HD2013SGI = derive2 { name="HD2013SGI"; version="1.42.0"; sha256="1xxc85al19qxj17rj1k4q0xp3wgkxr007akmq3an7mqrah0y8hm8"; depends=[EBImage geneplotter gplots limma LSD RColorBrewer splots vcd]; }; + HDCytoData = derive2 { name="HDCytoData"; version="1.22.0"; sha256="1xqwkwxaaj5yylx9pzvka8pj9gxg1z4g23d2sralcvqzcz7q13zn"; depends=[ExperimentHub flowCore SummarizedExperiment]; }; + HEEBOdata = derive2 { name="HEEBOdata"; version="1.40.0"; sha256="1xijrm32p191qydz1gkm8321b8ycb9h6y6m1qvc8shlhbbzw705h"; depends=[]; }; + HIVcDNAvantWout03 = derive2 { name="HIVcDNAvantWout03"; version="1.42.0"; sha256="0kyblhc6fdc5c45qyqcr2qnmp1zrwdrc0j91fml04pw5yxrf6dw0"; depends=[]; }; + HMP16SData = derive2 { name="HMP16SData"; version="1.22.0"; sha256="1ns7yyw0w8rrkw87awrrzxmb44gkkb1cn6j3cbzj8fbrd9whl30d"; depends=[AnnotationHub assertthat dplyr ExperimentHub kableExtra knitr magrittr readr S4Vectors stringr SummarizedExperiment tibble]; }; + HMP2Data = derive2 { name="HMP2Data"; version="1.16.0"; sha256="1xrvslsybzy1zjvck6imrjxzd0hsiyx4ly71ndirxs7yhh13d1qk"; depends=[AnnotationHub assertthat data_table dplyr ExperimentHub kableExtra knitr magrittr MultiAssayExperiment phyloseq readr S4Vectors SummarizedExperiment]; }; + HSMMSingleCell = derive2 { name="HSMMSingleCell"; version="1.22.0"; sha256="1nf6jsjvy3qacwz0dl5jc9h87xhj9q73b0g49c2yrxvv1dhayq0i"; depends=[]; }; + HarmanData = derive2 { name="HarmanData"; version="1.30.0"; sha256="0mqv76lj2amb18k5533r6lc42g4a0jggcj7h2dh1lk1hl973asqg"; depends=[]; }; + HarmonizedTCGAData = derive2 { name="HarmonizedTCGAData"; version="1.24.0"; sha256="1sfb7kzmwdvv71bf56z6sd81dfrs4v53igmnxphrvjiymdjxrb3b"; depends=[ExperimentHub]; }; + HelloRangesData = derive2 { name="HelloRangesData"; version="1.28.0"; sha256="09jrcwrn5vjsva2fz28193llhrysswhxyq83rczi5dnimr5qqnxc"; depends=[]; }; + HiBED = derive2 { name="HiBED"; version="1.0.0"; sha256="1cacjpghp5zbbcvn0fpfyhg56dx9bfa8d2qwf1dvbmwwcm85l0vw"; depends=[AnnotationHub dplyr FlowSorted_Blood_EPIC FlowSorted_DLPFC_450k minfi SummarizedExperiment tibble]; }; + HiCDataHumanIMR90 = derive2 { name="HiCDataHumanIMR90"; version="1.22.0"; sha256="1jy5hpq8vdki23yy3ivlhqj6k80z1rnby4xrk83wk0rxiz4sdxix"; depends=[]; }; + HiCDataLymphoblast = derive2 { name="HiCDataLymphoblast"; version="1.38.0"; sha256="1a6kf55sqqpqs3gk76np9payqj9i75ggn06iy46cazslnhnvmdvg"; depends=[]; }; + HiContactsData = derive2 { name="HiContactsData"; version="1.4.0"; sha256="07i91rz7bn6g27wbjrwgck3mdmj8lrsdda6pza9k1ghh5zssrx7i"; depends=[AnnotationHub BiocFileCache ExperimentHub]; }; + HighlyReplicatedRNASeq = derive2 { name="HighlyReplicatedRNASeq"; version="1.14.0"; sha256="1zz6xqn9amlh7v7v8c67i4n94lxc8w46g3gqnhbrlcpi6zid36a9"; depends=[ExperimentHub S4Vectors SummarizedExperiment]; }; + Hiiragi2013 = derive2 { name="Hiiragi2013"; version="1.38.0"; sha256="04ywn2nw551x082v9pxglxl83kfccsds566lwkpa87098i4wdx85"; depends=[affy Biobase boot clue cluster genefilter geneplotter gplots gtools KEGGREST lattice latticeExtra MASS mouse4302_db RColorBrewer xtable]; }; + HumanAffyData = derive2 { name="HumanAffyData"; version="1.28.0"; sha256="0g24nr0jdw6509xjski83jf2r35iklmnhqikmfr90ki4rn0fqar0"; depends=[Biobase ExperimentHub]; }; + IHWpaper = derive2 { name="IHWpaper"; version="1.30.0"; sha256="06qbcnq2i0qjc4xqld3gd8746qpvxy4avqba82vzdk0h95kxirmj"; depends=[Biobase BiocGenerics BiocParallel cowplot DESeq2 dplyr fdrtool genefilter ggplot2 IHW qvalue Rcpp SummarizedExperiment]; }; + ITALICSData = derive2 { name="ITALICSData"; version="2.40.0"; sha256="0fzx2qqykma2r2ds53wik4kb9a0wvybr63vf34s91731k21mgsqn"; depends=[]; }; + Illumina450ProbeVariants_db = derive2 { name="Illumina450ProbeVariants.db"; version="1.38.0"; sha256="1h0qcdmyd22x5y5iwi1w89ppb1k3nb2awwim1lcxgdinab8km52b"; depends=[]; }; + IlluminaDataTestFiles = derive2 { name="IlluminaDataTestFiles"; version="1.40.0"; sha256="08fb7aywjjka5lrpb46cd322sfnhcch5ilf5aq0a2sdq12m2psyi"; depends=[]; }; + Iyer517 = derive2 { name="Iyer517"; version="1.44.0"; sha256="1zahcx2kjspm3bvgxklfgd34srlrxcq9xcj37qa20b08892llkk7"; depends=[Biobase]; }; + JASPAR2014 = derive2 { name="JASPAR2014"; version="1.38.0"; sha256="1ha5nm4v28bfxxa6jqkag7hy0b7bph15v1qs8xwd9w2wam2znazx"; depends=[Biostrings]; }; + JASPAR2016 = derive2 { name="JASPAR2016"; version="1.30.0"; sha256="0dyx29f7jnyqcj85j2yrl8jcphi2kymx2y2mk7ws25xcahl5zzpy"; depends=[]; }; + KEGGandMetacoreDzPathwaysGEO = derive2 { name="KEGGandMetacoreDzPathwaysGEO"; version="1.22.0"; sha256="1rmn5zx5p4c8is5dd80nppl1r8ciyccwhiir0312bpaaplyc9qks"; depends=[Biobase BiocGenerics]; }; + KEGGdzPathwaysGEO = derive2 { name="KEGGdzPathwaysGEO"; version="1.40.0"; sha256="05s6cq27cdw9w9laq5hxjiynjavd873w2idpwa1k4kw0rdsni8cb"; depends=[Biobase BiocGenerics]; }; + KOdata = derive2 { name="KOdata"; version="1.28.0"; sha256="1dflsvfz7c2ahs60s4wx8mc9ar8qrz9ax8g9m67jchygcmqs4jla"; depends=[]; }; + LRcellTypeMarkers = derive2 { name="LRcellTypeMarkers"; version="1.10.0"; sha256="1wad78cpgf9pl8hl4issb0k1m0dlrk0bradkdz5b5a5pamlwh82c"; depends=[ExperimentHub]; }; + LiebermanAidenHiC2009 = derive2 { name="LiebermanAidenHiC2009"; version="0.40.0"; sha256="06qifvjaxjz51p2vkfdzxjbj5040772y3gzc0qpzsh5fapprkxv9"; depends=[IRanges KernSmooth]; }; + ListerEtAlBSseq = derive2 { name="ListerEtAlBSseq"; version="1.34.0"; sha256="15v80d554pai4584dhy3nzwva38b9r6997br7xqysj7v8x2f4392"; depends=[methylPipe]; }; + LungCancerACvsSCCGEO = derive2 { name="LungCancerACvsSCCGEO"; version="1.38.0"; sha256="1d0zfx6sqwanyh67996v008sjkscskm5z24n9siklc9w416nqa63"; depends=[]; }; + LungCancerLines = derive2 { name="LungCancerLines"; version="0.40.0"; sha256="0yr7l7964nkwlz6s9hsdab2sihrngk9wqakrn4pm5h8m15f8ls46"; depends=[Rsamtools]; }; + M3DExampleData = derive2 { name="M3DExampleData"; version="1.28.0"; sha256="0rp1zp14wvfwy67m0ph8amm41frj76gfylacdbdjyblcpdgzzlnq"; depends=[]; }; + MACSdata = derive2 { name="MACSdata"; version="1.10.0"; sha256="117jy39rn972hzwcckx5wdsrsxfzhwbx4wb6air4l7xcb6qmfrj1"; depends=[]; }; + MAQCsubset = derive2 { name="MAQCsubset"; version="1.40.0"; sha256="1qqn4mf2jrdkn28n1npzag50m24j29nm0adcj276s8fgwdayv434"; depends=[affy Biobase lumi]; }; + MAQCsubsetILM = derive2 { name="MAQCsubsetILM"; version="1.40.0"; sha256="1bb158bmy7195wnj0wap08g621xbzflvj30pv4l7mwc54lm1vqfx"; depends=[Biobase lumi]; }; + MEDIPSData = derive2 { name="MEDIPSData"; version="1.38.0"; sha256="1lrxg5vrfqxrnnpn8m3ypk3ikc6pa7pszxfi08gaa3a4c2glcc4m"; depends=[]; }; + MEEBOdata = derive2 { name="MEEBOdata"; version="1.40.0"; sha256="0ni928njn0hm38njgbnz223pvpq1318si12z5d56h3cczi2f3a37"; depends=[]; }; + MMAPPR2data = derive2 { name="MMAPPR2data"; version="1.16.0"; sha256="16ang08nc4jw8m4faacd0rhv47h5wlp771nd6d8bn1r6d5b9si3w"; depends=[Rsamtools]; }; + MMDiffBamSubset = derive2 { name="MMDiffBamSubset"; version="1.38.0"; sha256="1awhcc4zjmzwqc35xv1l2alybbnv1b16bbxn85xywdq0qyj8zgxp"; depends=[]; }; + MOFAdata = derive2 { name="MOFAdata"; version="1.18.0"; sha256="1pl593dlf87g88bdabqqn2a9b1vkgg4znp1l9wbyk49a35l2rqy1"; depends=[]; }; + MSMB = derive2 { name="MSMB"; version="1.20.0"; sha256="1nq9y7c3y0q1040fzsg5hiavqq4n1778cry420f03db1yg40lns0"; depends=[tibble]; }; + MUGAExampleData = derive2 { name="MUGAExampleData"; version="1.22.0"; sha256="1q8bqqpc14iymmmmv87yqzkpjlzq4r801hjav8kymsw66zlqi0rq"; depends=[]; }; + MerfishData = derive2 { name="MerfishData"; version="1.4.1"; sha256="055wmm0r8wyv8i2kil5f5lh5n2kjw36q4yrpqswf0fvdsvvrpaak"; depends=[AnnotationHub BumpyMatrix EBImage ExperimentHub S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; + MetaGxBreast = derive2 { name="MetaGxBreast"; version="1.22.0"; sha256="0b0s7g4ijqlsfbr8wdrs1g54hba9ry6i1af71ly0v6l7ff0j65r1"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; }; + MetaGxOvarian = derive2 { name="MetaGxOvarian"; version="1.22.0"; sha256="0k144fi1i9c1rlsif2pfk4lyzk25lkpfp1c4yanqqzbij8z50y6k"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; }; + MetaGxPancreas = derive2 { name="MetaGxPancreas"; version="1.22.0"; sha256="0a5daghij0c6ykdh2vvd0gmrinqbvnn2hm8apga768ib04ylhb13"; depends=[AnnotationHub ExperimentHub impute S4Vectors SummarizedExperiment]; }; + MetaScope = derive2 { name="MetaScope"; version="1.2.0"; sha256="0wpp2h3zldvcw9r8bjbbpcvkd3hgh11dp8qalcbm36kx4djc2d1a"; depends=[BiocFileCache Biostrings data_table dplyr ggplot2 magrittr Matrix MultiAssayExperiment Rbowtie2 readr rlang Rsamtools S4Vectors stringr SummarizedExperiment taxize tidyr]; }; + MethylAidData = derive2 { name="MethylAidData"; version="1.34.0"; sha256="0kn20wsij54c3i2w3yai97qqmnbawsz0326ai5zrlkalkra4w1r9"; depends=[MethylAid]; }; + MethylSeqData = derive2 { name="MethylSeqData"; version="1.12.0"; sha256="0bw450ada6nnz19d2b9qvx0szyldswrsmy21vsm0dw7idh4xfj6c"; depends=[ExperimentHub GenomeInfoDb GenomicRanges HDF5Array IRanges rhdf5 S4Vectors SummarizedExperiment]; }; + MicrobiomeBenchmarkData = derive2 { name="MicrobiomeBenchmarkData"; version="1.4.0"; sha256="1546ccbnz86scdslf17rzsvyc7h0pb4mw77b17jicfwr8h4qff25"; depends=[ape BiocFileCache S4Vectors SummarizedExperiment TreeSummarizedExperiment]; }; + MouseGastrulationData = derive2 { name="MouseGastrulationData"; version="1.16.0"; sha256="0m03wrqgfhlyc0rmjjcj8b9gcc2rv644hffnff3j1bnkjg5rldi0"; depends=[BiocGenerics BumpyMatrix ExperimentHub S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; + MouseThymusAgeing = derive2 { name="MouseThymusAgeing"; version="1.10.0"; sha256="19p7a0k565yz5201klib85z2gwqss0ywbv66sh0bvk4g5cmd9k0y"; depends=[BiocGenerics ExperimentHub S4Vectors SingleCellExperiment SummarizedExperiment]; }; + NCIgraphData = derive2 { name="NCIgraphData"; version="1.38.0"; sha256="1haia26flsmh553z0pn4zh4s9w3smkl5q16hmz4vpfwkgc3f9506"; depends=[]; }; + NGScopyData = derive2 { name="NGScopyData"; version="1.22.0"; sha256="0858c5cqkjlk55whiravwmnia26yfkgw4656zfscpdfz2n9xm50m"; depends=[]; }; + NanoporeRNASeq = derive2 { name="NanoporeRNASeq"; version="1.12.0"; sha256="0jvwl6k12acinwsvs62vx7dpnhjbcvhf8sbdw13gwwknrn96hgh4"; depends=[ExperimentHub]; }; + NestLink = derive2 { name="NestLink"; version="1.18.0"; sha256="1nr7ddlrbd4q963750x3cdnn7y6mf2y5q3v37ilhfplypnynlgy1"; depends=[AnnotationHub Biostrings ExperimentHub gplots protViz ShortRead]; }; + NetActivityData = derive2 { name="NetActivityData"; version="1.4.0"; sha256="1h3ih2y9jl5d3xk5fydgs9s9bsny3lksn67jxmrksxxrabr5zknl"; depends=[]; }; + Neve2006 = derive2 { name="Neve2006"; version="0.40.0"; sha256="0an77i7z2pqrgizd0z5n4iihg9zp3xbl8rgnfphsh9q3fbvwp185"; depends=[annotate Biobase hgu133a_db]; }; + NxtIRFdata = derive2 { name="NxtIRFdata"; version="1.8.0"; sha256="0gvx81w5krzdzz4v09qlscr0hklzmxq2pz4slwwy1dflq0rjswk5"; depends=[BiocFileCache ExperimentHub R_utils rtracklayer]; }; + OMICsPCAdata = derive2 { name="OMICsPCAdata"; version="1.20.0"; sha256="1jbdyxqyjp4yn6ywk80gin29wi5szwnz661l9hb8gcfbmhv5m1sv"; depends=[MultiAssayExperiment]; }; + ObMiTi = derive2 { name="ObMiTi"; version="1.10.0"; sha256="1sgl38mbnv99miy6n2gps9r5dzhadf1gvin95nif379kdq6xl0nz"; depends=[ExperimentHub SummarizedExperiment]; }; + OnassisJavaLibs = derive2 { name="OnassisJavaLibs"; version="1.24.0"; sha256="0ynb0n4d1ic1xhnwvqxvncr3vm5kwl3y0771rivrz6rrynfchy4c"; depends=[rJava]; }; + PCHiCdata = derive2 { name="PCHiCdata"; version="1.30.0"; sha256="19xzn1agfn34y16prfcgwzbz40bw654zj28lhamiv2mvljxy60jx"; depends=[Chicago]; }; + PREDAsampledata = derive2 { name="PREDAsampledata"; version="0.42.0"; sha256="1ps8m8g0s5vsxhhr80ylxcngnn7xipfc70cyxszwmhcwgy1ghwja"; depends=[affy annotate Biobase PREDA]; }; + PWMEnrich_Dmelanogaster_background = derive2 { name="PWMEnrich.Dmelanogaster.background"; version="4.36.0"; sha256="02aiy2qb62r8qgi5gaj2scra46qgf4wh3lzpqvsxbi7c2glnp7ig"; depends=[PWMEnrich]; }; + PWMEnrich_Hsapiens_background = derive2 { name="PWMEnrich.Hsapiens.background"; version="4.36.0"; sha256="0fr775h5k98xspmjpyf363dav38j7cixnmhapfsy8ijijyl4g8jw"; depends=[PWMEnrich]; }; + PWMEnrich_Mmusculus_background = derive2 { name="PWMEnrich.Mmusculus.background"; version="4.36.0"; sha256="1gwmilyikslgp56xrff2sqqm32lmdq589cya19cm0yi7pa17fqdw"; depends=[PWMEnrich]; }; + PasillaTranscriptExpr = derive2 { name="PasillaTranscriptExpr"; version="1.30.0"; sha256="17482ypqdvgc6p3fvkfdwfcpm3gn4rfd6zjsnlbqc99dpikq13sr"; depends=[]; }; + PathNetData = derive2 { name="PathNetData"; version="1.38.0"; sha256="07wq6526ihrzmyk2rql0zpkr6qkg6rdkk2f03lxkaq7fsbidb03q"; depends=[]; }; + PepsNMRData = derive2 { name="PepsNMRData"; version="1.20.0"; sha256="1xy05yd2nzrl2s0bjsr9y94rwcm68gglbijxplalyy3ppcwwm55c"; depends=[]; }; + PhyloProfileData = derive2 { name="PhyloProfileData"; version="1.16.0"; sha256="1r51zrvm8n7w66ii97wz6ncz0d7s473ppdn8b958mh15w81rk5fr"; depends=[BiocStyle Biostrings ExperimentHub]; }; + ProData = derive2 { name="ProData"; version="1.40.0"; sha256="099xf8143k2z74nb1hdlswrv1gjmg41255x0njxa4wzdwlpyp5k2"; depends=[Biobase]; }; + PtH2O2lipids = derive2 { name="PtH2O2lipids"; version="1.28.0"; sha256="1rx0sg5nz7i20d74y0cq6nybc1q62h0d9rpi3dk02jfngk3zzb5d"; depends=[CAMERA LOBSTAHS xcms]; }; + QDNAseq_hg19 = derive2 { name="QDNAseq.hg19"; version="1.32.0"; sha256="01fnbbkyfpim0xh6v0bm553pmrg9n3bnwn4adds0p47lai1n7dr8"; depends=[QDNAseq]; }; + QDNAseq_mm10 = derive2 { name="QDNAseq.mm10"; version="1.32.0"; sha256="0x54ncmxqb1qci41qy7q9gskx7zp1rcpad3wvil023h81l1s5pg6"; depends=[QDNAseq]; }; + QUBICdata = derive2 { name="QUBICdata"; version="1.30.0"; sha256="0apbndslrdrflmwvz456q31x3mr1p7v7kpbl0fp0hajadjb38aha"; depends=[]; }; + RGMQLlib = derive2 { name="RGMQLlib"; version="1.22.0"; sha256="1sys8vji70mkd100zy84ywv6ralr5k7z1044rn03wp75s1h8klwy"; depends=[]; }; + RITANdata = derive2 { name="RITANdata"; version="1.26.0"; sha256="0jkcf4g2h6bpx0v8ybwnrni3qq9hajxxprfq9pszpmf4xb9cmgs2"; depends=[]; }; + RMassBankData = derive2 { name="RMassBankData"; version="1.40.0"; sha256="190q4q8201i1v3bb4snasxy2kbwvnppq9kpqmxa1hg9mlvk643fq"; depends=[]; }; + RNAinteractMAPK = derive2 { name="RNAinteractMAPK"; version="1.40.0"; sha256="0s5bb73ixp2zhzj0ssq3kai6ijrpn9flg23f1n2vsi2vf66wfajj"; depends=[Biobase fields gdata genefilter lattice MASS RNAinteract sparseLDA]; }; + RNAmodR_Data = derive2 { name="RNAmodR.Data"; version="1.16.0"; sha256="0p9x1j4ra11banvifh5z07i26b2s59b2knbgj44yx4qi0d3cnn81"; depends=[ExperimentHub ExperimentHubData]; }; + RNAseqData_HNRNPC_bam_chr14 = derive2 { name="RNAseqData.HNRNPC.bam.chr14"; version="0.40.0"; sha256="1gdwsbkjnb3927ihq2gbwrksvhm61wm114bwhazypmpnnwcfv27f"; depends=[]; }; + RRBSdata = derive2 { name="RRBSdata"; version="1.22.0"; sha256="1visrkyxljp3d7h7qgf72l71w91vah93qmi733s15zmsm090sf1c"; depends=[BiSeq]; }; + RTCGA_CNV = derive2 { name="RTCGA.CNV"; version="1.30.0"; sha256="0akfifgkkhzrrw21gxm4h2liam5f7rd2ghidyr21c6660wg1444c"; depends=[RTCGA]; }; + RTCGA_PANCAN12 = derive2 { name="RTCGA.PANCAN12"; version="1.30.0"; sha256="1iz72gbpm0msiasrc0xyiw9c3s2a59fgbz7kfrlwskspqvm9pvdl"; depends=[RTCGA]; }; + RTCGA_RPPA = derive2 { name="RTCGA.RPPA"; version="1.30.0"; sha256="1ln4v06pf2skxaa0vcwp9m2vkczm5bc37kfczqg022n0fi7wa084"; depends=[RTCGA]; }; + RTCGA_clinical = derive2 { name="RTCGA.clinical"; version="20151101.32.0"; sha256="0ivfq9z66v9a867v4c6581v7pmbcwy1g6fr5bgs1fp0n7rl6b15g"; depends=[RTCGA]; }; + RTCGA_mRNA = derive2 { name="RTCGA.mRNA"; version="1.30.0"; sha256="1wf5rxxxa3qgihpa9hbcabryz74k3vc1yp2mscs4w0zdym48fw78"; depends=[RTCGA]; }; + RTCGA_methylation = derive2 { name="RTCGA.methylation"; version="1.30.0"; sha256="1g543scp553gya9ax7c7rm93gra1mqhv93y8jj9hvv7sq5mx469j"; depends=[RTCGA]; }; + RTCGA_miRNASeq = derive2 { name="RTCGA.miRNASeq"; version="1.30.0"; sha256="1hvb77c44vbhyqbpqrid5vrashqng3clpqm5svr7fq6xhqaj3v34"; depends=[RTCGA]; }; + RTCGA_mutations = derive2 { name="RTCGA.mutations"; version="20151101.32.0"; sha256="1n265xk9rr491rlcgy98nvvxmnhjf9b4x80qbc9xlb0ks3hpgx13"; depends=[RTCGA]; }; + RTCGA_rnaseq = derive2 { name="RTCGA.rnaseq"; version="20151101.32.0"; sha256="1nmn9dqp6kdsz7536wln8wv1ms8nlgys7xlmc555q1irc1pz4ksc"; depends=[RTCGA]; }; + RUVnormalizeData = derive2 { name="RUVnormalizeData"; version="1.22.0"; sha256="1sqkvkwlvwwspj6xg3xq062s2brr6yjmhw5dlccrjff0qcc9w41p"; depends=[Biobase]; }; + RcisTarget_hg19_motifDBs_cisbpOnly_500bp = derive2 { name="RcisTarget.hg19.motifDBs.cisbpOnly.500bp"; version="1.22.0"; sha256="0yhalgrj0p99ka7wfcnb70adjy4n7zlk9caxd5fk8hhspzkwzkfp"; depends=[data_table]; }; + ReactomeGSA_data = derive2 { name="ReactomeGSA.data"; version="1.16.1"; sha256="18n4shnlbgz6vv63hljzcpz1yd2y4p0gwgj6i37lvr4p7hmg7bi3"; depends=[edgeR limma ReactomeGSA Seurat]; }; + RegParallel = derive2 { name="RegParallel"; version="1.20.0"; sha256="0fxvzj5vgsdq2jm467a5ddya5p6603rzhklh8hmdn9d352yzy01i"; depends=[arm data_table doParallel foreach iterators stringr survival]; }; + RforProteomics = derive2 { name="RforProteomics"; version="1.40.0"; sha256="11cjlhvk04r0flf0wr7n4qmlazaaw4kd5gs589h95mblsmk4andx"; depends=[BiocManager biocViews MSnbase R_utils]; }; + RnBeads_hg19 = derive2 { name="RnBeads.hg19"; version="1.34.0"; sha256="0mv6pqkhwiwdq72dh0m79c7inpkvz8nwy4m8b93sjy1wi76wgci6"; depends=[GenomicRanges]; }; + RnBeads_hg38 = derive2 { name="RnBeads.hg38"; version="1.34.0"; sha256="19l875n3injnn1af01jmlf62a6dgd9mn54ppcsy1x71wrcs1lk25"; depends=[GenomicRanges]; }; + RnBeads_mm10 = derive2 { name="RnBeads.mm10"; version="2.10.0"; sha256="0x1nxgdwad42k39mrfilbi1kkm9avm0cbcrhsrxs67ajng9qmci8"; depends=[GenomicRanges]; }; + RnBeads_mm9 = derive2 { name="RnBeads.mm9"; version="1.34.0"; sha256="1d7lshk5a8zn4wi4f5b8q4d206i379iv6gxxsbzygrlnk74j9kzf"; depends=[GenomicRanges]; }; + RnBeads_rn5 = derive2 { name="RnBeads.rn5"; version="1.34.0"; sha256="182pdfi6dvz4r5v41r62d0rsxkm5vlrl7y6pwx9nx3h1gaiybl8s"; depends=[GenomicRanges]; }; + RnaSeqSampleSizeData = derive2 { name="RnaSeqSampleSizeData"; version="1.34.0"; sha256="0p2q7phn40ax94yh43xg72fmnnljfi6cfiyaad39br1hi2b6hrjf"; depends=[edgeR]; }; + SBGNview_data = derive2 { name="SBGNview.data"; version="1.16.0"; sha256="1nprhg7rkia9jwy8mqx7iqdh1qs81nk9al8fvv1ynq2cc9x77jfr"; depends=[bookdown knitr rmarkdown]; }; + SCLCBam = derive2 { name="SCLCBam"; version="1.34.0"; sha256="0jnpg8qdbd5b6809glzg68n12bavnpqaaarn2vfv5c6055qg6jgy"; depends=[]; }; + SFEData = derive2 { name="SFEData"; version="1.4.0"; sha256="0wkb27cs4zvvhclgk2slx8n7jx1mx3q87kn86n4rjdcx2074ndqz"; depends=[AnnotationHub BiocFileCache ExperimentHub]; }; + SNAData = derive2 { name="SNAData"; version="1.48.0"; sha256="0qd48ggg1wjy5h47hzl9iqzy13gsxxn4f7fq4b0ra35vhckmcvyf"; depends=[graph]; }; + SNAGEEdata = derive2 { name="SNAGEEdata"; version="1.38.0"; sha256="17wbf4xsljkryzjpk57kvjbiln0ig8d717j953wy0inz7vzdkpkn"; depends=[]; }; + SNPhoodData = derive2 { name="SNPhoodData"; version="1.32.0"; sha256="0p8361lmlfz496ivw9qaqkg7b3hr4gb9g9r73fxp6amy2xncb00g"; depends=[]; }; + STexampleData = derive2 { name="STexampleData"; version="1.10.0"; sha256="1rhq1743aa9bw54d2c74yclwd56a5vq5jppfzxz7mmv3cf5x3ar9"; depends=[ExperimentHub SpatialExperiment]; }; + SVM2CRMdata = derive2 { name="SVM2CRMdata"; version="1.34.0"; sha256="1k7cjakxcqq86xvx0d0799hb94hi7w05amd9yncd0nf4dcy6zm0f"; depends=[]; }; + SimBenchData = derive2 { name="SimBenchData"; version="1.10.0"; sha256="1g5wff2hx3sra48wcvwh3hs9lpfavq2pqflcm9wfcch9y10m8iqd"; depends=[ExperimentHub S4Vectors]; }; + Single_mTEC_Transcriptomes = derive2 { name="Single.mTEC.Transcriptomes"; version="1.30.0"; sha256="1w3f71mfq74sjlsasi87gvqs2mhny41zm22zswz9km5msi8r2wva"; depends=[]; }; + SingleCellMultiModal = derive2 { name="SingleCellMultiModal"; version="1.14.0"; sha256="0kwff2nqv7nf7rqifyzr6klba6k1h29y4332b60k7hv3psjsm015"; depends=[AnnotationHub BiocBaseUtils BiocFileCache ExperimentHub HDF5Array Matrix MultiAssayExperiment S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; + SingleMoleculeFootprintingData = derive2 { name="SingleMoleculeFootprintingData"; version="1.10.0"; sha256="1chlik8ycsiw0kvxikiplb5xkj4afi4qniy666csyqlksaflr703"; depends=[ExperimentHub]; }; + SomatiCAData = derive2 { name="SomatiCAData"; version="1.40.0"; sha256="0m92db12a9h7866l3vbvpqnxnvkbik8znh3l6qyl22l438wvd8b2"; depends=[]; }; + SomaticCancerAlterations = derive2 { name="SomaticCancerAlterations"; version="1.38.0"; sha256="140bn20n60dnsb3li0ygnymfb7wwgh523yx8pmc6zvyx6izdg618"; depends=[GenomicRanges IRanges S4Vectors]; }; + SpatialDatasets = derive2 { name="SpatialDatasets"; version="1.0.0"; sha256="1szsggymx05swr4i5mgxcxk7jbz8qh6xxwpnmmzajns03gmszggy"; depends=[ExperimentHub SpatialExperiment]; }; + SpikeIn = derive2 { name="SpikeIn"; version="1.44.0"; sha256="04saqrdzl1irdbvgr9s86sgwsvnlp5l4xbx16wj41476rbzhg2aw"; depends=[affy]; }; + SpikeInSubset = derive2 { name="SpikeInSubset"; version="1.42.0"; sha256="14w4g6n0nn1mg9wifqp2jrxb0hy2sqfcnycwhvir1znfck83fzir"; depends=[affy Biobase]; }; + TBX20BamSubset = derive2 { name="TBX20BamSubset"; version="1.38.0"; sha256="1f09l2ihh80cqqg6sw5ypa51c1zsspkq2g06lbfi19zgllcfh80f"; depends=[Rsamtools xtable]; }; + TCGAMethylation450k = derive2 { name="TCGAMethylation450k"; version="1.38.0"; sha256="0pz8xmi4zxp1qvpcwhf54sy5lhpaspdlad1dlrhxgjbfm8xl535q"; depends=[]; }; + TCGAWorkflowData = derive2 { name="TCGAWorkflowData"; version="1.26.0"; sha256="03p3ifgr9w737v9dvx1qvj2kdyf1l9a2qnmwii0nmlak9dp1cc52"; depends=[SummarizedExperiment]; }; + TCGAbiolinksGUI_data = derive2 { name="TCGAbiolinksGUI.data"; version="1.22.0"; sha256="04fmnqa95rb2lgflcg3d7kbz9jj990r9hlxwlhhzb79dv9wd1mfa"; depends=[]; }; + TCGAcrcmRNA = derive2 { name="TCGAcrcmRNA"; version="1.22.0"; sha256="0vwd0pi8g4pmz8g61c0mr0njha6qsm5m1z7iyf0lnwrm6y6bv6px"; depends=[Biobase]; }; + TCGAcrcmiRNA = derive2 { name="TCGAcrcmiRNA"; version="1.22.0"; sha256="0qrcj2mb58dwdwfpypnwyb2f7kcjjyqnyz4v42rc43r04xy14l2m"; depends=[Biobase]; }; + TENxBUSData = derive2 { name="TENxBUSData"; version="1.16.0"; sha256="071qbq0avzbs6c64l6lrmrs1hmbrg98bnf91vpz4x7s0p5axx87n"; depends=[AnnotationHub BiocGenerics ExperimentHub]; }; + TENxBrainData = derive2 { name="TENxBrainData"; version="1.22.0"; sha256="1ia7a6jq7giy130avgv5brffxk5r2yql7rjppxs9nab3a6y472yy"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; + TENxPBMCData = derive2 { name="TENxPBMCData"; version="1.20.0"; sha256="09pgf31x1zqcrnvf2fwdbx4qn7pgsaby8damxcfq5xr3iksqhdwb"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; + TENxVisiumData = derive2 { name="TENxVisiumData"; version="1.10.0"; sha256="0yi7axdam9b0ps0818cgygbmjcdknn032bm2snb6xf3g4i8n45f4"; depends=[ExperimentHub SpatialExperiment]; }; + TMExplorer = derive2 { name="TMExplorer"; version="1.12.0"; sha256="0vi99vpbfzwwqpdxgjlhcr835nnbfngwz6fag9kvd7ndicb21zy4"; depends=[BiocFileCache Matrix SingleCellExperiment]; }; + TabulaMurisData = derive2 { name="TabulaMurisData"; version="1.20.0"; sha256="1p0pyvgwzbnkx1687n2j7gxjzb5s49r1njklsff0di66m8nlis7k"; depends=[ExperimentHub]; }; + TabulaMurisSenisData = derive2 { name="TabulaMurisSenisData"; version="1.8.0"; sha256="0f6gj56rgcv378ry4h1sgm3zhv083yh23qf1pj9rvabwhdfgk8p1"; depends=[AnnotationHub ExperimentHub gdata HDF5Array SingleCellExperiment SummarizedExperiment]; }; + TargetScoreData = derive2 { name="TargetScoreData"; version="1.38.0"; sha256="19s1jxrh04gfkx7a9h59v6vl063wlf2j71bi6lxq9lm689y23z4k"; depends=[]; }; + TargetSearchData = derive2 { name="TargetSearchData"; version="1.40.0"; sha256="12z820mwi779dlmg5hf1cq5gpvrxg9ijb38s43fbzzgagn25czff"; depends=[]; }; + TimerQuant = derive2 { name="TimerQuant"; version="1.32.0"; sha256="18jl2x9ywfwm4ir2kwa9y4fq0lsz0295lx7f7qz08l4d1yrb1w4v"; depends=[deSolve dplyr ggplot2 gridExtra locfit shiny]; }; + TumourMethData = derive2 { name="TumourMethData"; version="1.0.0"; sha256="100kw4552rc48sqpw9makyf9nwgrs049hkvbrd8zjmrf542cj9md"; depends=[ExperimentHub GenomicRanges HDF5Array R_utils rhdf5 SummarizedExperiment]; }; + VariantToolsData = derive2 { name="VariantToolsData"; version="1.26.0"; sha256="0jj8wp2mp0xgd4hixyb59bykxbbpklncjj39ra5nyw4h4ziwrbfm"; depends=[BiocGenerics GenomicRanges VariantAnnotation]; }; + VectraPolarisData = derive2 { name="VectraPolarisData"; version="1.6.0"; sha256="0zr94qgyj365sy7cyzjsm9zbxyv6zbd8lwfr1nqz0p6f6hb9b8qw"; depends=[ExperimentHub SpatialExperiment]; }; + WES_1KG_WUGSC = derive2 { name="WES.1KG.WUGSC"; version="1.34.0"; sha256="1p8z4p1s5l4hlp78ifiy3gan1n8iljaafbqv88vxwbjh2x9gfnjl"; depends=[]; }; + WGSmapp = derive2 { name="WGSmapp"; version="1.14.0"; sha256="0yv323mkv681f20dzjh1xaz19xbn4j777xxlmq27rvmk3j1vfah9"; depends=[GenomicRanges]; }; + WeberDivechaLCdata = derive2 { name="WeberDivechaLCdata"; version="1.4.0"; sha256="1r6an1lxjsrdi4y0prfyy9jjjazicy9bwykinf5dvkac2h3zhs81"; depends=[ExperimentHub SingleCellExperiment SpatialExperiment]; }; + XhybCasneuf = derive2 { name="XhybCasneuf"; version="1.40.0"; sha256="1qzbsmqn9y1483108pzh8zkiw1q1xzghincrcmz8cl2a4q10hyxf"; depends=[affy ath1121501cdf RColorBrewer tinesath1cdf]; }; + adductData = derive2 { name="adductData"; version="1.18.0"; sha256="16c79wy55p4ryglxph80dibfm1ni8c5yfk6fnmq064ihw4zwcld5"; depends=[AnnotationHub ExperimentHub]; }; + affycompData = derive2 { name="affycompData"; version="1.40.0"; sha256="183wgbc4j7f9d4rwr9smndnmw1i390abak23wp6p02zk340qmvq4"; depends=[affycomp Biobase]; }; + affydata = derive2 { name="affydata"; version="1.50.0"; sha256="1p9gqv8xnakwhf4sani09krlrq6qs4gr8yfjmi8g3s1zq4d32h1k"; depends=[affy]; }; + airway = derive2 { name="airway"; version="1.22.0"; sha256="1xs5bw6azvcdwh9325alndzrp82alxxqwpkf60zsk2q7lv43nwbr"; depends=[SummarizedExperiment]; }; + antiProfilesData = derive2 { name="antiProfilesData"; version="1.38.0"; sha256="0nbg37w6ij9vpj0mrbsx35naqv48kg8kkfl3x39ycbl860mrbr0b"; depends=[Biobase]; }; + aracne_networks = derive2 { name="aracne.networks"; version="1.28.0"; sha256="16gy79hgy07kynjf2s1lrh6a86brhz1caylginmkw547hal43nvf"; depends=[viper]; }; + bcellViper = derive2 { name="bcellViper"; version="1.38.0"; sha256="1q9ig5z03flq57nrhwnk6gdz4kamjmpwdfifwvnhac3l3f5z828h"; depends=[Biobase]; }; + beadarrayExampleData = derive2 { name="beadarrayExampleData"; version="1.40.0"; sha256="1mb821p4hf9fmj0f7s0rxwbxv8kb5ln0x2gfnydg4jnyz7k9w5p8"; depends=[beadarray Biobase]; }; + benchmarkfdrData2019 = derive2 { name="benchmarkfdrData2019"; version="1.16.0"; sha256="1p441c08bxx81z556n5wrzxkbq5g4lrwkp1wk7jh6zk6qs3jqg96"; depends=[ExperimentHub SummarizedExperiment]; }; + beta7 = derive2 { name="beta7"; version="1.40.0"; sha256="1q77pmvjnwyi0hm0dmi45a5fcj1phhz9r2fvz4vnmq5b632zp30v"; depends=[marray]; }; + biotmleData = derive2 { name="biotmleData"; version="1.26.0"; sha256="06lnkwqzsk4v241309w174ia6x8iksh7rvk3z8l0xr6hf31sg5gw"; depends=[]; }; + biscuiteerData = derive2 { name="biscuiteerData"; version="1.16.0"; sha256="1wqdj1499psnf9y816k05m6h38yfsin4rwzqm1209ddxza6jbw1x"; depends=[AnnotationHub curl ExperimentHub GenomicRanges]; }; + bladderbatch = derive2 { name="bladderbatch"; version="1.40.0"; sha256="19dgvdbxsswy1fl68wwf4ifplppm1blzjw1dr06mz0yjq80a7rvl"; depends=[Biobase]; }; + blimaTestingData = derive2 { name="blimaTestingData"; version="1.22.0"; sha256="14rlw5xxgbybsrzmzncqwzkc617gfays5z8x6ifigfdlrp5h1rpl"; depends=[]; }; + bodymapRat = derive2 { name="bodymapRat"; version="1.18.0"; sha256="1sfq6vxkb68l0q5qbnpm3fi53k4q9a890bv2ff9c6clhc42wx3h6"; depends=[ExperimentHub SummarizedExperiment]; }; + breakpointRdata = derive2 { name="breakpointRdata"; version="1.20.0"; sha256="13w9vp436akpnywhsr6kz763c2yakrvpyiplggfb6w50wi2xm5xj"; depends=[]; }; + breastCancerMAINZ = derive2 { name="breastCancerMAINZ"; version="1.40.0"; sha256="1nbvacb04ka0p88hailawz0i4472gaagxy0yw9qg83f9da1dzm4l"; depends=[]; }; + breastCancerNKI = derive2 { name="breastCancerNKI"; version="1.40.0"; sha256="0q3lvq447jw3ny2896mz009x0ijdxgy4xgk4y00sv9nsbwic1ais"; depends=[]; }; + breastCancerTRANSBIG = derive2 { name="breastCancerTRANSBIG"; version="1.40.0"; sha256="03q9y9cbipp8a275hcw5yzwx7l5qrc6fqzdy8vy7z5ij825ygnad"; depends=[]; }; + breastCancerUNT = derive2 { name="breastCancerUNT"; version="1.40.0"; sha256="0p11hll0pjzycgqbjhcn06vcah7kfvxbzsrqvbwglajs0b5m6dra"; depends=[]; }; + breastCancerUPP = derive2 { name="breastCancerUPP"; version="1.40.0"; sha256="0mi9dqbx7fyrxmc4l12c0x6i865f5691f94wzw88q2hwzzz80n6p"; depends=[]; }; + breastCancerVDX = derive2 { name="breastCancerVDX"; version="1.40.0"; sha256="12r8zql30ssr0cxy8v1qawwsky54321c737ny19n2yrl7sm08gf0"; depends=[]; }; + brgedata = derive2 { name="brgedata"; version="1.24.0"; sha256="0nplh5km45hdb001mc86fh9yyj56mfvcr2g0zffq0nbjlpvspz0i"; depends=[Biobase SummarizedExperiment]; }; + bronchialIL13 = derive2 { name="bronchialIL13"; version="1.40.0"; sha256="110791bhnpzadc2ja8i59bix42ficqxqw3il8hnqb38i7c43w0zw"; depends=[affy]; }; + bsseqData = derive2 { name="bsseqData"; version="0.40.0"; sha256="15fyv6l6bsa4fk4qxpfgxgw5aq1dd3pry84zapklijxm24g6yl6j"; depends=[bsseq]; }; + cMap2data = derive2 { name="cMap2data"; version="1.38.0"; sha256="1d2yv9gq3w1b50f602ajbdqky5vwsh19qqg8a3czlphghrjrlfwd"; depends=[]; }; + cancerdata = derive2 { name="cancerdata"; version="1.40.0"; sha256="1670df52ainxq220vzblrv2jml2bql8vid09b51dzhjhikwzxhs4"; depends=[Biobase]; }; + ccTutorial = derive2 { name="ccTutorial"; version="1.40.0"; sha256="1rqblyk7389xqwzvib2xjyjrc8l3qd2g8z9vj96mrfyr8dpccjjs"; depends=[affy Biobase Ringo topGO]; }; + ccdata = derive2 { name="ccdata"; version="1.28.0"; sha256="1vskwqb0n3qfgmakc8zlvfkag653gkz3l9j8lqnhxbbnnads738j"; depends=[]; }; + celarefData = derive2 { name="celarefData"; version="1.20.0"; sha256="11vx5hmbjsfzyxgb8qzhy3f54krcp33h8ki61irxxl06q2n59928"; depends=[]; }; + celldex = derive2 { name="celldex"; version="1.12.0"; sha256="1ckjdmiw9g1wdswijy3dvamv3kqi11j8b8p9dgr1yv5q2lfjbnwl"; depends=[AnnotationDbi AnnotationHub DelayedArray DelayedMatrixStats ExperimentHub S4Vectors SummarizedExperiment]; }; + cfToolsData = derive2 { name="cfToolsData"; version="1.0.0"; sha256="0icr4llq99ghyvi8nsdfnp5sydh8icr23y8ar7jg0qpwiagdl3l9"; depends=[ExperimentHub]; }; + chipenrich_data = derive2 { name="chipenrich.data"; version="2.26.0"; sha256="0hfisbzbhz501dvcwvx3cnag9643ydw6f0q122w7mrnzsag82013"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicRanges IRanges readr rtracklayer S4Vectors]; }; + chipseqDBData = derive2 { name="chipseqDBData"; version="1.18.0"; sha256="114645f6db8pp263g6h2gb2cwhdgqh8risssq2vfzzdv16qqw640"; depends=[AnnotationHub ExperimentHub Rsamtools S4Vectors]; }; + chromstaRData = derive2 { name="chromstaRData"; version="1.28.0"; sha256="13xrdr9xrfysh714q4p00pgvwr6ryhvd3jinfqr1gb27s7bdvsi6"; depends=[]; }; + clustifyrdatahub = derive2 { name="clustifyrdatahub"; version="1.12.0"; sha256="004g6s917ayxiixlc8zp4h7zai9amcm6bllr9mz5j9sgm8kd8px4"; depends=[ExperimentHub]; }; + cnvGSAdata = derive2 { name="cnvGSAdata"; version="1.38.0"; sha256="1aask6cx972qw62p2p16n1sk0rjmrr9hhqlaaab52rn4lfdiaba2"; depends=[cnvGSA]; }; + colonCA = derive2 { name="colonCA"; version="1.44.0"; sha256="0qkjmbyh5hwfjw657qam7xpjnym4qqbv1292fbqzwdyr0019jpfn"; depends=[Biobase]; }; + crisprScoreData = derive2 { name="crisprScoreData"; version="1.6.0"; sha256="0rrwsfp8m8z389yfr8ls6wkz7faa2iz8pnljl2776qa3zgsfmhni"; depends=[AnnotationHub ExperimentHub]; }; + curatedAdipoArray = derive2 { name="curatedAdipoArray"; version="1.14.0"; sha256="06dcb58i86gg4ar3hyh5w8kdqd0rf1ps7l021nfwklzm622b4wzc"; depends=[]; }; + curatedAdipoChIP = derive2 { name="curatedAdipoChIP"; version="1.18.0"; sha256="16g8k2cvi890b9j30yzm7lxnxljl2k4x1yxvd8cg1ba94vzimw6k"; depends=[ExperimentHub SummarizedExperiment]; }; + curatedAdipoRNA = derive2 { name="curatedAdipoRNA"; version="1.18.0"; sha256="1dy58ppw1ck89p036y6iml9210hv7f4zvsm0wi5m13b4ij7a749p"; depends=[SummarizedExperiment]; }; + curatedBladderData = derive2 { name="curatedBladderData"; version="1.38.0"; sha256="1i9hbm8gh9f09fzyjga7rjps7hlbsivnnbpk8fgb0838msjq5bl2"; depends=[affy]; }; + curatedBreastData = derive2 { name="curatedBreastData"; version="2.30.0"; sha256="127kjiqb2laz77cx9lr0rs43kgwxyi52rd7ivhfpcxhivsg4hcsr"; depends=[Biobase BiocStyle ggplot2 impute XML]; }; + curatedCRCData = derive2 { name="curatedCRCData"; version="2.34.0"; sha256="1dqcdpzls41adih54wfpcb36mpysw0za14pz4wsjwisqnjwzpxvn"; depends=[BiocGenerics nlme]; }; + curatedMetagenomicData = derive2 { name="curatedMetagenomicData"; version="3.10.0"; sha256="0fgvpxc1878lm8l0bib12zzwrgsap0vw4zn77qpz1mljnz43shcb"; depends=[AnnotationHub dplyr ExperimentHub magrittr mia purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr tidyselect TreeSummarizedExperiment]; }; + curatedOvarianData = derive2 { name="curatedOvarianData"; version="1.40.1"; sha256="18163l0g3g042m2qgz143smxia3lp8v7rddkqmkg4hzns7baxfaa"; depends=[Biobase BiocGenerics]; }; + curatedTBData = derive2 { name="curatedTBData"; version="1.8.0"; sha256="116ck61pw6diili326x0x8p7f8d5w624n4w3pd212vhq8555yrqs"; depends=[AnnotationHub ExperimentHub MultiAssayExperiment rlang]; }; + curatedTCGAData = derive2 { name="curatedTCGAData"; version="1.24.0"; sha256="0kfdzc5arzsrdaps7b3r718yawpv1x7wms5jp90j8cxpn0hz07az"; depends=[AnnotationHub ExperimentHub HDF5Array MultiAssayExperiment S4Vectors SummarizedExperiment]; }; + davidTiling = derive2 { name="davidTiling"; version="1.42.0"; sha256="1xfkyncwi9zrynk6dqsmacmkxx2qvj1axda3wn55b1vbw2wimpyf"; depends=[Biobase GO_db tilingArray]; }; + depmap = derive2 { name="depmap"; version="1.16.0"; sha256="1vb3f5ar2jlkjyhp7rv4imlylinm6fi94ki277jgdaxn12v78qxj"; depends=[AnnotationHub dplyr ExperimentHub]; }; + derfinderData = derive2 { name="derfinderData"; version="2.20.0"; sha256="1h8rl8mnxk2lsl8xa8mihvbd77yw32fpxdbhhn4rv1v8i5j35r7l"; depends=[]; }; + diffloopdata = derive2 { name="diffloopdata"; version="1.30.0"; sha256="1f0gnwpjxkby7kd2bphnz4lv7gx9k297yqz0b954m7adp1sh6aqa"; depends=[]; }; + diggitdata = derive2 { name="diggitdata"; version="1.34.0"; sha256="01r356zdy4pi8z90pbww8q7dfmq09zf148d5sq3w22z1ypsy6zm1"; depends=[Biobase viper]; }; + dorothea = derive2 { name="dorothea"; version="1.14.0"; sha256="1vinixcpl4hjjfw48qfngsvw1yr82yscdxrsgagdm8gm7b72qjgh"; depends=[bcellViper decoupleR dplyr magrittr]; }; + dressCheck = derive2 { name="dressCheck"; version="0.40.0"; sha256="1mb6cmyf61rb7jdwczhzcvadgqijij53w03d87xq7zqsc7jxi9z3"; depends=[Biobase]; }; + dyebiasexamples = derive2 { name="dyebiasexamples"; version="1.42.0"; sha256="06sp4fxsph3w84g960s65sy1vc032p2xj3sf0v94nh78f6myg0mj"; depends=[GEOquery marray]; }; + easierData = derive2 { name="easierData"; version="1.8.0"; sha256="138x8i1zd4cvlawg9pa5ia1kmmdaxm0g9lkivzxl077s9vlpjp8d"; depends=[AnnotationHub ExperimentHub SummarizedExperiment]; }; + ecoliLeucine = derive2 { name="ecoliLeucine"; version="1.42.0"; sha256="02v2hv8qcwdi2z531xqvnfdymzmd5qqp868arg5r0zcrzj5kkiaw"; depends=[affy ecolicdf]; }; + emtdata = derive2 { name="emtdata"; version="1.10.0"; sha256="0fjqmg9w7c1lv0b0ldr26rxsly78sw2asj3hw8h8yd623g7bkddw"; depends=[edgeR ExperimentHub SummarizedExperiment]; }; + epimutacionsData = derive2 { name="epimutacionsData"; version="1.6.0"; sha256="1gbh1ad0kqdmyrnmvrw5lbxlafvq12gqmbw9w3bxi7q1ahclh4yh"; depends=[]; }; + estrogen = derive2 { name="estrogen"; version="1.48.0"; sha256="0nbyg1pj7vqxaxgznkhz2v14cq42gg8jkn5mbkd3nrz86slzkblm"; depends=[]; }; + etec16s = derive2 { name="etec16s"; version="1.30.0"; sha256="1amhmhl74fyfvh4w1a0r0g7ahqm5yq16i87s4mzwvc03vslps143"; depends=[Biobase metagenomeSeq]; }; + ewceData = derive2 { name="ewceData"; version="1.10.0"; sha256="1kgh5r0pplvblrrkf1qxg7c92psrwm2bjpbs30dp8mdsnjdahm9v"; depends=[ExperimentHub]; }; + faahKO = derive2 { name="faahKO"; version="1.42.0"; sha256="0m3m9382b463wbl5hrzh04lp8h052gka8b7q69s740hlb91npjx7"; depends=[xcms]; }; + fabiaData = derive2 { name="fabiaData"; version="1.40.0"; sha256="0alh11k7vj6ripj2017j6afa8wjb4xb03zfvrh10svsrr0a7qldv"; depends=[Biobase]; }; + ffpeExampleData = derive2 { name="ffpeExampleData"; version="1.40.0"; sha256="16bxp2x0n77hzlf6m871wgprrhkydcbbnw88jp8nb7d0fl1vhxyr"; depends=[lumi]; }; + fibroEset = derive2 { name="fibroEset"; version="1.44.0"; sha256="17dzp6gjfgsnvwplk3inf7s491brf1pnn1bq1a195s8m0r5kd946"; depends=[Biobase]; }; + fission = derive2 { name="fission"; version="1.22.0"; sha256="0y07zj5iw6fmr397xkxijgfy8mmv1k42mqjfpmv01kb0hzayjj8n"; depends=[SummarizedExperiment]; }; + flowPloidyData = derive2 { name="flowPloidyData"; version="1.28.0"; sha256="1r3w88d20jipmj7gchv0mmw9rbziq0s7vyvi5isc4lp59hc6m9h1"; depends=[]; }; + flowWorkspaceData = derive2 { name="flowWorkspaceData"; version="3.14.0"; sha256="0wm0s1839c14b2y05b8nini2aqp39vl7ycsp1nz1y2amxirdfpyq"; depends=[]; }; + fourDNData = derive2 { name="fourDNData"; version="1.2.0"; sha256="06dzm57f56y396py2mmfzls9yypkxzj032hpba8srq263zqpi9z0"; depends=[BiocFileCache GenomicRanges HiCExperiment IRanges S4Vectors]; }; + frmaExampleData = derive2 { name="frmaExampleData"; version="1.38.0"; sha256="0sdh0ijkpni4xk07dyvkckr6k0dha6zbciggxaki61j99fs5nwsv"; depends=[]; }; + furrowSeg = derive2 { name="furrowSeg"; version="1.30.0"; sha256="0vvr9x50yw7h5qcgcva2505cgqk276ci7yfbzvizn3mq4n2r3n3j"; depends=[abind dplyr EBImage locfit tiff]; }; + gDNAinRNAseqData = derive2 { name="gDNAinRNAseqData"; version="1.2.0"; sha256="13v14dhwb1mkpxc5z08amqajhkncrkl38k4js48bp36s8lzb0zw8"; depends=[BiocGenerics ExperimentHub RCurl Rsamtools XML]; }; + gDRtestData = derive2 { name="gDRtestData"; version="1.0.0"; sha256="0pwrypvc1hvrcd6dckiid5vjpwpcbw3vg61s88mms3kjs8163c0r"; depends=[checkmate]; }; + gageData = derive2 { name="gageData"; version="2.40.0"; sha256="13g8hzkh34c0my75xnxdffa1d67xvn9hn592s25m18400lgsfif0"; depends=[]; }; + gaschYHS = derive2 { name="gaschYHS"; version="1.40.0"; sha256="08dgm24ycsldp6pjqhflpxqm91yqp199n2j1fg9m4wrgbyakypkm"; depends=[Biobase]; }; + gcspikelite = derive2 { name="gcspikelite"; version="1.40.0"; sha256="1yfmp96k1iy6sjyafs2sflflnmnq4czkjba61vzxb4alirra9jf5"; depends=[]; }; + geneLenDataBase = derive2 { name="geneLenDataBase"; version="1.38.0"; sha256="0skycixz0qbm8cs10kgrkl1ab1qh0mz8641mf5194y839m81d060"; depends=[GenomicFeatures rtracklayer]; }; + genomationData = derive2 { name="genomationData"; version="1.34.0"; sha256="044q01dbcd34lxgwpg76yk0msvx7gpiibiqxp6fr9jswq6izrzq7"; depends=[]; }; + golubEsets = derive2 { name="golubEsets"; version="1.44.0"; sha256="1rwhb48wz20i06whxdj1cb6qjda545w4050y87c55h3xqcair3ya"; depends=[Biobase]; }; + gpaExample = derive2 { name="gpaExample"; version="1.14.0"; sha256="0danfxw9jqlv9862pcf7sdaxnwxrpgs9gy38xpjzx3q25y4y1589"; depends=[]; }; + grndata = derive2 { name="grndata"; version="1.34.0"; sha256="17g2jp99dl6kypzz4v2pf0h29vx16pwfw6apbhgggv1had9593nm"; depends=[]; }; + h5vcData = derive2 { name="h5vcData"; version="2.22.0"; sha256="0pflrqg6yaiw7w9b8wazf74sdgx1fqgd0iz9cdq0bx4jnra5f0gz"; depends=[]; }; + hapmap100khind = derive2 { name="hapmap100khind"; version="1.44.0"; sha256="1qzvf4g8rd85g3qxx5gckx4w1v258h9jd9dfcxbn39ghamqhy9yb"; depends=[]; }; + hapmap100kxba = derive2 { name="hapmap100kxba"; version="1.44.0"; sha256="0743byawrk3azgrb1wdb16khd2pl887fxf4r7mf6zm08lgjyr3vv"; depends=[]; }; + hapmap500knsp = derive2 { name="hapmap500knsp"; version="1.44.0"; sha256="1kla7h8hv6kyc9v6ra5scg3f1dlmw160wl5c1vqq9b6irqmrah6l"; depends=[]; }; + hapmap500ksty = derive2 { name="hapmap500ksty"; version="1.44.0"; sha256="0g13vk2gnnmpm21fngr7cfhry3sacxmbxsym5wz4sibfv3d72n7r"; depends=[]; }; + hapmapsnp5 = derive2 { name="hapmapsnp5"; version="1.44.0"; sha256="1486k3dlnvadxl8qphzria3qrw91x8j0b3k4di8c8s0fjkrfdh33"; depends=[]; }; + hapmapsnp6 = derive2 { name="hapmapsnp6"; version="1.44.0"; sha256="1dx59dsm4pmca9xf5c2abk5clmczx2wh6j47xx8h064x3n5s611n"; depends=[]; }; + harbChIP = derive2 { name="harbChIP"; version="1.40.0"; sha256="0xb553h6ffnik8c299h5imaabb2ca0fkqk0hrbs1a1acg11xqs32"; depends=[Biobase Biostrings IRanges]; }; + healthyControlsPresenceChecker = derive2 { name="healthyControlsPresenceChecker"; version="1.6.0"; sha256="127p0wwqf0dx9c8y3rjmsw6nl9rczr72zn8dsqf92mdj13qpxi2m"; depends=[geneExpressionFromGEO GEOquery magrittr xml2]; }; + healthyFlowData = derive2 { name="healthyFlowData"; version="1.40.0"; sha256="1w96g3m8kniz4nil682hz55pxhxgaqfgmfii990mrd0smirnckwx"; depends=[flowCore]; }; + hgu133abarcodevecs = derive2 { name="hgu133abarcodevecs"; version="1.40.0"; sha256="1v8ssmzad3a1wwwh2rw9pkrcwjbbv9m2i5iqjsn0qmi7s9xpdn2z"; depends=[]; }; + hgu133plus2CellScore = derive2 { name="hgu133plus2CellScore"; version="1.22.0"; sha256="08d6p5zmf674hj6qy6sz8n9fg70xr83y21d7ln22i9gzvvgbazpi"; depends=[Biobase]; }; + hgu133plus2barcodevecs = derive2 { name="hgu133plus2barcodevecs"; version="1.40.0"; sha256="1c3432d28n4bj363s7h493izz865i2gfrs8x2fr6n2js9p4bz8bf"; depends=[]; }; + hgu2beta7 = derive2 { name="hgu2beta7"; version="1.42.0"; sha256="1xxwj4d760y6ymw2ag5xqd212yb7wns2yaxgla62v3pcalvdccfp"; depends=[]; }; + humanStemCell = derive2 { name="humanStemCell"; version="0.42.0"; sha256="0bywcagkg17gdcwbbw68fla1481llz96bhr3apbymvk8m4vbhlp0"; depends=[Biobase hgu133plus2_db]; }; + imcdatasets = derive2 { name="imcdatasets"; version="1.10.0"; sha256="0yvii8qxgxabf9i2z5pz37dn9s6vw3g6z2k6c5k4rjns8wmvixps"; depends=[cytomapper DelayedArray ExperimentHub HDF5Array S4Vectors SingleCellExperiment SpatialExperiment]; }; + kidpack = derive2 { name="kidpack"; version="1.44.0"; sha256="15c7ahrpjapqp90nanpkjb9hbcv42a84xg939fgpzkpgc7ch0m9k"; depends=[Biobase]; }; + leeBamViews = derive2 { name="leeBamViews"; version="1.38.0"; sha256="0j7q5slcb59z6vf2z123h9ld0gaazsiih7an603id1bqjprkd74b"; depends=[Biobase BSgenome GenomicAlignments GenomicRanges IRanges Rsamtools S4Vectors]; }; + leukemiasEset = derive2 { name="leukemiasEset"; version="1.38.0"; sha256="1srwn3sy929hskka9gfnqpjrh8xy0pz76ihq4amq8wbdawh1zv8b"; depends=[Biobase]; }; + lumiBarnes = derive2 { name="lumiBarnes"; version="1.42.0"; sha256="1c27s7ajkmygfmd2g6dpsamwcm87xlxgr31wyn6g1rb7zw2zdpy2"; depends=[Biobase lumi]; }; + lungExpression = derive2 { name="lungExpression"; version="0.40.0"; sha256="1kzf8lsl9sh0ikn9zx5sfj5z7ld94xldhmj7awvgp0bsbqlra2qc"; depends=[Biobase]; }; + lydata = derive2 { name="lydata"; version="1.28.0"; sha256="0gwaiq16q1kfx533hymqnh6zk9nimljdbidvzb23bykj99kmsiqr"; depends=[]; }; + mAPKLData = derive2 { name="mAPKLData"; version="1.34.0"; sha256="0vhysi7wyw7d3vbq4qcq3i3ic953awppg2bix40ywz1459b5p43g"; depends=[]; }; + mCSEAdata = derive2 { name="mCSEAdata"; version="1.22.0"; sha256="0la86384k9f0r8mgh6an023bx1sjklglgm9rwzg33hcc58lb02ki"; depends=[GenomicRanges]; }; + macrophage = derive2 { name="macrophage"; version="1.18.0"; sha256="10d69v34fhxfy4nhw8h50j4q5kblm032cmjnparxm5gm7ksiqwxy"; depends=[]; }; + mammaPrintData = derive2 { name="mammaPrintData"; version="1.38.0"; sha256="0bm1lfdjhav34rqvkvygkllmwibjh0f34p58vml3ljjdhgghawrq"; depends=[]; }; + maqcExpression4plex = derive2 { name="maqcExpression4plex"; version="1.46.0"; sha256="0ihwmzndj3yxs75x3h9w03ydvy08hmi0pzy561mjsyhdrrb8i4dc"; depends=[]; }; + marinerData = derive2 { name="marinerData"; version="1.2.0"; sha256="00m1r6ijhykq96d86h17asngdm8a1ss2213nd6n6lsj4dshr74a0"; depends=[ExperimentHub]; }; + mcsurvdata = derive2 { name="mcsurvdata"; version="1.20.0"; sha256="06k500vivc8anxv1x639acjv55w5r6pc2ghmszkh42h1q7a27r68"; depends=[AnnotationHub Biobase ExperimentHub]; }; + metaMSdata = derive2 { name="metaMSdata"; version="1.38.0"; sha256="18gixjk80zzvjg39av6rhbl9zpvnx09fd6gcbnsjxag7vmk88d1d"; depends=[]; }; + methylclockData = derive2 { name="methylclockData"; version="1.10.0"; sha256="0q4hiclws0fg03kwvbdwka024gghl1hbmmfficxfghslll78mc3y"; depends=[ExperimentHub ExperimentHubData]; }; + miRNATarget = derive2 { name="miRNATarget"; version="1.40.0"; sha256="0qlazpmar9wi0gbh2qpkz8f44vzzg79iia1sgry42xbykx7bzx0y"; depends=[Biobase]; }; + miRcompData = derive2 { name="miRcompData"; version="1.32.0"; sha256="15w8vldxp5wp0vqfy3k7s8imjvmdaibgiw0p2li5sx2j0g6i27g6"; depends=[]; }; + microRNAome = derive2 { name="microRNAome"; version="1.24.0"; sha256="09b0260qxdhx7sax1xmg8nz8mf0nv4yh70ibd8cyxj8fpnzifnhh"; depends=[SummarizedExperiment]; }; + microbiomeDataSets = derive2 { name="microbiomeDataSets"; version="1.10.0"; sha256="1i118r0wfq2y57h3m1l3nzhrixmkq0dsc1dfkbfi83xl29ijhjn9"; depends=[ape BiocGenerics Biostrings ExperimentHub MultiAssayExperiment SummarizedExperiment TreeSummarizedExperiment]; }; + minfiData = derive2 { name="minfiData"; version="0.48.0"; sha256="12lhyv3zb8vps7v61zfm8sz4r18rpgphgy7nvdpj48dj3awdnpw8"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest minfi]; }; + minfiDataEPIC = derive2 { name="minfiDataEPIC"; version="1.28.0"; sha256="1m2wl7x48rjjl3sh8r42wmw761r55821jjvbxjs7lycbmgd162ph"; depends=[IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest minfi]; }; + minionSummaryData = derive2 { name="minionSummaryData"; version="1.32.0"; sha256="1pkg77i5xi96yqn7i3xchwknh5lii35hyms8rjqqzamjr7g16ifs"; depends=[]; }; + mosaicsExample = derive2 { name="mosaicsExample"; version="1.40.0"; sha256="02x97k7s5l3ca1xws4xplmc3x14wjy0rx1kl5jmy59ncc2lwik4r"; depends=[]; }; + mouse4302barcodevecs = derive2 { name="mouse4302barcodevecs"; version="1.40.0"; sha256="1l2blxqsxy27lkrgd08r6a3j8va54hzhl5lx0i9bxpj1i9xiwkr6"; depends=[]; }; + msPurityData = derive2 { name="msPurityData"; version="1.30.0"; sha256="1gf28bcj65vyvghdd2vqj3zsymw2y4jk8dhhkhh6ps18qh149ca0"; depends=[]; }; + msd16s = derive2 { name="msd16s"; version="1.22.0"; sha256="0s7bbcxgly2xr21dkf88hpby5b4lhwy18jyji88dhqqq4jpbc8dk"; depends=[Biobase metagenomeSeq]; }; + msdata = derive2 { name="msdata"; version="0.42.0"; sha256="1jm1zjqzkd0vy8ww0k0y1fgs6i9vkg7ir6dyga001n170g11vfzr"; depends=[]; }; + msigdb = derive2 { name="msigdb"; version="1.10.0"; sha256="1fzgq31n059zhlkny3rfwfnriz81q9brk14r5yx2zhizlv8jcais"; depends=[AnnotationDbi AnnotationHub ExperimentHub GSEABase org_Hs_eg_db org_Mm_eg_db]; }; + msqc1 = derive2 { name="msqc1"; version="1.30.0"; sha256="1s6wfmrss67qz8lsiqbm3bsvw3zm9pczv0w6712dd2bd2mf2lirg"; depends=[lattice]; }; + mtbls2 = derive2 { name="mtbls2"; version="1.32.0"; sha256="1z4n5bykfk02b6gscwygy4r99fjk9cmiv8fzp2996q4mhzr7dh6c"; depends=[]; }; + muscData = derive2 { name="muscData"; version="1.16.0"; sha256="01jmd59zk4fkny984wv9iwd9bq56cq4mnqz1x9wcjkmgk5bnvwxa"; depends=[ExperimentHub SingleCellExperiment]; }; + mvoutData = derive2 { name="mvoutData"; version="1.38.0"; sha256="17rbb19wv8dzgkrkhgabm3fgr3l2gzvjl34ichlcfalaa17wci3w"; depends=[affy Biobase lumi]; }; + nanotubes = derive2 { name="nanotubes"; version="1.18.0"; sha256="0ah7y051mk6pl96y6h9qlxk4gg2a7al8j9ccwk0fjl7v5fa1daya"; depends=[]; }; + nullrangesData = derive2 { name="nullrangesData"; version="1.8.0"; sha256="0dd9d07z2k3n34wi5mynyghc0bsmyn5fhl0510ij7zbd58i520xy"; depends=[ExperimentHub GenomicRanges InteractionSet]; }; + oct4 = derive2 { name="oct4"; version="1.18.0"; sha256="1kbv532sav3a0s1893hxjw7pf25lhff5kxnraq6h7h7vqqmim93j"; depends=[]; }; + octad_db = derive2 { name="octad.db"; version="1.4.0"; sha256="03dih6cc71aj31l9s982qpdsyy51q83inykyz4a8pk81x3pld2n9"; depends=[ExperimentHub]; }; + optimalFlowData = derive2 { name="optimalFlowData"; version="1.14.0"; sha256="0agaavlhsv1zk3xdwncn4nkz7q80bjnsg32msnnj8x79925hfgwq"; depends=[]; }; + orthosData = derive2 { name="orthosData"; version="1.0.0"; sha256="0n9vkvfxah29cjfwnxjqw0kf5kdgjvx9394kgilnbskys95fh6v3"; depends=[AnnotationHub BiocFileCache ExperimentHub HDF5Array stringr SummarizedExperiment]; }; + pRolocdata = derive2 { name="pRolocdata"; version="1.40.0"; sha256="0zjys778k9xydd6r1nvklz324mq688472b8i8d1nm8ayb880bi7i"; depends=[Biobase MSnbase]; }; + parathyroidSE = derive2 { name="parathyroidSE"; version="1.40.0"; sha256="0lv7wlbdi05a3l4pv8x4cnc6jzqk1gb82rpmj1cv0nsq7gqhqscv"; depends=[SummarizedExperiment]; }; + pasilla = derive2 { name="pasilla"; version="1.30.0"; sha256="0dga4bb7qjigy1m1yp4bs4frwynjqfy3dnnylx4maai9x2zlynd0"; depends=[DEXSeq]; }; + pasillaBamSubset = derive2 { name="pasillaBamSubset"; version="0.40.0"; sha256="1lr7dn9s7i287k602xa1zyx5xs6wa3g58kmpamc3hcsi5nn1iv7x"; depends=[]; }; + pcxnData = derive2 { name="pcxnData"; version="2.24.0"; sha256="0mhqgii84ncx2na49h3qvciqz7jfbbgil12i2cb4snlmxpa66k0j"; depends=[]; }; + pd_atdschip_tiling = derive2 { name="pd.atdschip.tiling"; version="0.40.0"; sha256="03yvz9z4dmnm4cvfwkw3b7srmq7hmwk9y21lpsn5yz01wjp9wf6w"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pepDat = derive2 { name="pepDat"; version="1.22.0"; sha256="0ks5lxfwwgxfv0ls42fr5hj0iq2m6ylv13ybp8gq5r24p6hyigq3"; depends=[GenomicRanges]; }; + plotgardenerData = derive2 { name="plotgardenerData"; version="1.8.0"; sha256="1c8004k5kqx1lryc7x57xvlqic7km11r2b723r5ar1x5mghl9lr3"; depends=[]; }; + prebsdata = derive2 { name="prebsdata"; version="1.38.0"; sha256="1jszgh5sq0fls0484zfy41cpxwfg04pky54ma2r8v0x2aksb9fnv"; depends=[]; }; + preciseTADhub = derive2 { name="preciseTADhub"; version="1.10.0"; sha256="006kdb7rv63jyn4xnvrk13s5by1m85jgnfs2594h51af4sgyd2id"; depends=[ExperimentHub]; }; + prostateCancerCamcap = derive2 { name="prostateCancerCamcap"; version="1.30.0"; sha256="1962yhm8j1mb3yvdkvdn8i35dmwj69larlp201vwqr8a25l67isq"; depends=[Biobase]; }; + prostateCancerGrasso = derive2 { name="prostateCancerGrasso"; version="1.30.0"; sha256="0mvlnfps3xa6039ysbp5hc8cy30masw9p1rhhms9f79m1xh3ldqr"; depends=[Biobase]; }; + prostateCancerStockholm = derive2 { name="prostateCancerStockholm"; version="1.30.0"; sha256="19dkx1brrwjcrjyfhajiazfpy853kmqr10npzkarnb1fw3dhn9a9"; depends=[Biobase]; }; + prostateCancerTaylor = derive2 { name="prostateCancerTaylor"; version="1.30.0"; sha256="0mccc3fwrnayjlpjyncizsrnnapgb7mhywvcdwlspp2ma0xzq2kw"; depends=[Biobase]; }; + prostateCancerVarambally = derive2 { name="prostateCancerVarambally"; version="1.30.0"; sha256="10irpxg5gfj10s310irjh1lacg05s6073vfqlv5jmpwgjjz8g84m"; depends=[Biobase]; }; + ptairData = derive2 { name="ptairData"; version="1.10.0"; sha256="11fxa0j4jl19ig21v00acbkapwi0y5d9n36q82pb8kz2krdaa9xc"; depends=[rhdf5 signal]; }; + pumadata = derive2 { name="pumadata"; version="2.38.0"; sha256="0rc2qda3s3326g1ymychhxa3c1vb16vj7sllfqymridqwm907k0x"; depends=[Biobase oligo puma]; }; + qPLEXdata = derive2 { name="qPLEXdata"; version="1.20.0"; sha256="0l6agwhqsm5z98j0hm1h7df6lrq7rgwch99a33532f5zmn6bq7xa"; depends=[dplyr knitr MSnbase qPLEXanalyzer]; }; + rRDPData = derive2 { name="rRDPData"; version="1.22.0"; sha256="18k925rd7yslvc6gl9gn9fk7672w57327rsybi5vpphvpyqsqls1"; depends=[rRDP]; }; + raerdata = derive2 { name="raerdata"; version="1.0.0"; sha256="0f8k9a714fc0wkrg2ja1193302q712aw6q4nv79qnvavqx12p0hi"; depends=[BiocGenerics ExperimentHub Rsamtools rtracklayer SingleCellExperiment]; }; + rcellminerData = derive2 { name="rcellminerData"; version="2.24.0"; sha256="0fmidhiqaf2vrhz6b5qr7bhisqnr3vff1aczp02qfhj5zyrf2vp6"; depends=[Biobase]; }; + restfulSEData = derive2 { name="restfulSEData"; version="1.24.0"; sha256="1ydi54mbvvsn73j955qjiqgpc2qvgdxfa9gsflx5cc14c0aqyb9h"; depends=[DelayedArray ExperimentHub HDF5Array SummarizedExperiment]; }; + rheumaticConditionWOLLBOLD = derive2 { name="rheumaticConditionWOLLBOLD"; version="1.40.0"; sha256="0qaxxhn31kwny0327ki5yllp4cnljdqbqmrb0arx1qggbysb31gf"; depends=[]; }; + sampleClassifierData = derive2 { name="sampleClassifierData"; version="1.26.0"; sha256="0ir21cvcqq9xh43pidh4lrm1slzknsjm9lad3qhh7dn2x5dg8p7p"; depends=[SummarizedExperiment]; }; + scATAC_Explorer = derive2 { name="scATAC.Explorer"; version="1.8.0"; sha256="1qjacprh3q0g1fyq70akasfr66hxw2g8n1bwn4yhf798vly5ngf8"; depends=[BiocFileCache data_table Matrix S4Vectors SingleCellExperiment]; }; + scMultiome = derive2 { name="scMultiome"; version="1.2.0"; sha256="0j9cwlnj0078yyzfjiwsadx34g1ddcrfm5xmzjv59dmk55iy59d7"; depends=[AnnotationHub AzureStor checkmate DelayedArray ExperimentHub GenomicRanges HDF5Array MultiAssayExperiment rhdf5 S4Vectors SingleCellExperiment SummarizedExperiment]; }; + scRNAseq = derive2 { name="scRNAseq"; version="2.16.0"; sha256="0dbh3sqq7lkkdf7vls5qg7fbn6y74c7hsigb4d69pvk934ll88aw"; depends=[AnnotationDbi AnnotationHub BiocGenerics ensembldb ExperimentHub GenomicFeatures GenomicRanges S4Vectors SingleCellExperiment SummarizedExperiment]; }; + scTHI_data = derive2 { name="scTHI.data"; version="1.14.0"; sha256="1y28wldw2xln9bp4hgymjdlgz9fjiyhb56kac6z7aiy1pifavw48"; depends=[]; }; + scanMiRData = derive2 { name="scanMiRData"; version="1.8.0"; sha256="116v4l8rqg2lsadjhhhn40fdgfar6hbx5abri5kdq7bc5fagg957"; depends=[scanMiR]; }; + scpdata = derive2 { name="scpdata"; version="1.10.0"; sha256="0zwwbqss2a6vkzhz517j89gf02z4f5b9kx5wbnyi2g15ihwlvaxr"; depends=[AnnotationHub ExperimentHub QFeatures S4Vectors SingleCellExperiment]; }; + seq2pathway_data = derive2 { name="seq2pathway.data"; version="1.34.0"; sha256="0iaz4i5garvhai2bpwxm59h4qasbasv66a2b8mql2rqa4s6wnf0a"; depends=[]; }; + seqCNA_annot = derive2 { name="seqCNA.annot"; version="1.38.0"; sha256="0kzmn5hx8ag02pz8b78cq7dbalw2w60y441cjyyvxjgycwcfvmvj"; depends=[]; }; + seqc = derive2 { name="seqc"; version="1.36.0"; sha256="0zxmh69v45ys1hv9kkr7g6v67npcip6s11r3am502zq1dnk7khg1"; depends=[Biobase]; }; + serumStimulation = derive2 { name="serumStimulation"; version="1.38.0"; sha256="0c6zg119rdmqhgrzi3s10856l9vyrqmd8c858hw20aiagvxn5nik"; depends=[]; }; + sesameData = derive2 { name="sesameData"; version="1.20.0"; sha256="0a5xchdnlw9ixafk8p3ny58yqv74ba9j4z2sdyp990rbaqrx1gjw"; depends=[AnnotationHub ExperimentHub GenomeInfoDb GenomicRanges IRanges readr S4Vectors stringr]; }; + seventyGeneData = derive2 { name="seventyGeneData"; version="1.38.2"; sha256="1zpks4fpwjb640pggwd1xldri2lf3fl8pcbvi244c6dgkf8nq93i"; depends=[]; }; + shinyMethylData = derive2 { name="shinyMethylData"; version="1.22.0"; sha256="1i6ffgi79jgpkg6nhil7v7vi23yv2j7czzibj6dxdc0kpb1n0q1h"; depends=[]; }; + signatureSearchData = derive2 { name="signatureSearchData"; version="1.16.0"; sha256="1xn0y7mcpk4s4x9azzabxfq0hxwlx7dvpb4yjrl3x8zcyk394s3z"; depends=[affy Biobase dplyr ExperimentHub limma magrittr R_utils rhdf5]; }; + simpIntLists = derive2 { name="simpIntLists"; version="1.38.0"; sha256="1683dsi6bm45v5wk9fgvrmvap15w6gvwnfijg5ayj29shiaa2qif"; depends=[]; }; + smokingMouse = derive2 { name="smokingMouse"; version="1.0.0"; sha256="0xm4a7yp6802xcmh29hwvlz39gqb5s380mzi5rck89fl6wjl4bf6"; depends=[]; }; + spatialDmelxsim = derive2 { name="spatialDmelxsim"; version="1.8.0"; sha256="110anvdbsq8mh3ibfhps9hyfhlk2np4mjs224377s1sasmpzwbbb"; depends=[ExperimentHub SummarizedExperiment]; }; + spatialLIBD = derive2 { name="spatialLIBD"; version="1.14.1"; sha256="0zqbnj55d06xai9qlg1hcy2kczjn6zxrhqwwsi18a36511qks5qb"; depends=[AnnotationHub benchmarkme BiocFileCache BiocGenerics cowplot DT edgeR ExperimentHub fields GenomicRanges ggplot2 golem IRanges jsonlite limma magick Matrix paletteer plotly png RColorBrewer rtracklayer S4Vectors scater scuttle sessioninfo shiny shinyWidgets SingleCellExperiment SpatialExperiment statmod SummarizedExperiment tibble viridisLite]; }; + spqnData = derive2 { name="spqnData"; version="1.14.0"; sha256="0kvnkz71w1c7yhl4kqdj9j51d1ix2g7q3pqr2678f31hhw7yr1ck"; depends=[SummarizedExperiment]; }; + stemHypoxia = derive2 { name="stemHypoxia"; version="1.38.0"; sha256="1ak78mvgm9dv80ji44b1cb4y8bq0l4k0cpx734m8dy8mr3i8nblw"; depends=[]; }; + stjudem = derive2 { name="stjudem"; version="1.42.0"; sha256="0pcvvvaqalr5jklqy7vzxkp0cd9nj9dk941drgr7ndbqc2navz2c"; depends=[]; }; + synapterdata = derive2 { name="synapterdata"; version="1.40.0"; sha256="1hl3r6smv25vhwxwrxw2c98db4c36392js49zj9kgf7c22qpyaqr"; depends=[synapter]; }; + systemPipeRdata = derive2 { name="systemPipeRdata"; version="2.6.0"; sha256="004sjgvhn9hq14f4mwfakrkkm2mwr2bdcbld25b393in0k26r9hf"; depends=[BiocGenerics Biostrings jsonlite remotes]; }; + tartare = derive2 { name="tartare"; version="1.16.0"; sha256="1w8z756s2c4vcxan8lid5mflyn8n718vhqn72x3mspg1pbb6k0l6"; depends=[AnnotationHub ExperimentHub]; }; + timecoursedata = derive2 { name="timecoursedata"; version="1.12.0"; sha256="10i4wcdjqd2qh6rpl65xi5mj2hsam78hi3haqp4xhg0ha4f73nb3"; depends=[SummarizedExperiment]; }; + tinesath1cdf = derive2 { name="tinesath1cdf"; version="1.40.0"; sha256="12db5w6fsmpjx2xgq7f3hp5czm21jp17826mi7jdz1c0217i1h4s"; depends=[]; }; + tinesath1probe = derive2 { name="tinesath1probe"; version="1.40.0"; sha256="1s119zkz03rq0bs3fjx85rwr7f2fxk144ykvglbzz3m6wxwi94r9"; depends=[AnnotationDbi]; }; + tissueTreg = derive2 { name="tissueTreg"; version="1.22.0"; sha256="17hjzwvk9pa1zhvmqrs99dnm428bm2br4xjmydp7d8j2mdsbkfs3"; depends=[]; }; + tofsimsData = derive2 { name="tofsimsData"; version="1.30.0"; sha256="18fn2krbc1mg3phx1sjpshsq9n39jlm75n9s7615h4jdcky9gzld"; depends=[]; }; + topdownrdata = derive2 { name="topdownrdata"; version="1.24.0"; sha256="01wxdwq87yan5a71z60bzs18w1ryjvgscnrrpdksqs56009k5992"; depends=[topdownr]; }; + tuberculosis = derive2 { name="tuberculosis"; version="1.8.0"; sha256="15jmhn7lrdwz19hv076yf0g2wqw7c32vp4pjzj2151f4xzxrl1iz"; depends=[AnnotationHub dplyr ExperimentHub magrittr purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; }; + tweeDEseqCountData = derive2 { name="tweeDEseqCountData"; version="1.40.0"; sha256="1s071578qldq564ylrkd9azn5519rdc3g1gdp9v8hj4zh8kza56v"; depends=[Biobase]; }; + tximportData = derive2 { name="tximportData"; version="1.30.0"; sha256="0ksmg3gblkqzz40pzm35y6wghjmszrimdx7bxhq5jv4piqwii0hg"; depends=[]; }; + vulcandata = derive2 { name="vulcandata"; version="1.24.0"; sha256="18wbxwwp7bsmdbn4g6d96x45b672fyrhlh38kbcz3j5dysdg1clr"; depends=[]; }; + xcoredata = derive2 { name="xcoredata"; version="1.6.0"; sha256="1chcjylfdl07q19f924hsml22lbfcjrzndp1appi3q80hzbc3pz6"; depends=[ExperimentHub]; }; + yeastCC = derive2 { name="yeastCC"; version="1.42.0"; sha256="1abl3jlwznzdmfpsqy0bfvrn6xx99yc8wz70s228lalvac4lqrfn"; depends=[Biobase]; }; + yeastExpData = derive2 { name="yeastExpData"; version="0.48.0"; sha256="13hxrcsvxwjdr649xzl07fkl0mzx6j36hkmgmj9zj270gsvlchns"; depends=[graph]; }; + yeastGSData = derive2 { name="yeastGSData"; version="0.40.0"; sha256="0i3fawlbxb6xc9wilxlc5gjr22ikp1x4rc2dich1cmpbjqd2zg1c"; depends=[]; }; + yeastNagalakshmi = derive2 { name="yeastNagalakshmi"; version="1.38.0"; sha256="1d1y7xpggizgiv2qma31mlzri2jidir425q08fdnnm9ymcxx83z0"; depends=[]; }; + yeastRNASeq = derive2 { name="yeastRNASeq"; version="0.40.0"; sha256="1b7bdbyzh6lx4qp4md9b7qxd433l8wpswfq0azxjdn33yryv8spm"; depends=[]; }; + zebrafishRNASeq = derive2 { name="zebrafishRNASeq"; version="1.22.0"; sha256="0fhsg1j40rkzxphnq7gl98zyqijacmfrjf4ffmbvr70mxw3zysgz"; depends=[]; }; ABAData = derive2 { name="ABAData"; version="1.24.0"; sha256="1wgniq7ibvjj6dx63ixr3i5yclqmg94qpifzfbzzn9yjj3wnikzr"; depends=[]; broken = true; }; + ChimpHumanBrainData = derive2 { name="ChimpHumanBrainData"; version="1.38.0"; sha256="1hgc2a7wsbw5ivdjknv82p3pvznq29lm8g4fdxy6dyr781xghs0w"; depends=[affy hexbin limma qvalue statmod]; broken = true; }; DREAM4 = derive2 { name="DREAM4"; version="1.31.0"; sha256="11ypc84agvq0q0v7bk0b25cm48awxay5hhhjd95gw9s7jk196i2p"; depends=[SummarizedExperiment]; broken = true; }; MAQCsubsetAFX = derive2 { name="MAQCsubsetAFX"; version="1.30.0"; sha256="14mwg96g7aza81vc3hpmb41scmygl8vnsi6s8p48c8v92106asmb"; depends=[affy Biobase]; broken = true; }; + MIGSAdata = derive2 { name="MIGSAdata"; version="1.24.0"; sha256="1s7fyf8n86a3znacjjs0zf22amw4rlgnvw2idld0np0yz81ggzs2"; depends=[]; broken = true; }; MSstatsBioData = derive2 { name="MSstatsBioData"; version="1.13.0"; sha256="1jzypgfmd6d0fdj9ycp4jwihjpxyinr5kwi2x2dg2z6hvxx97gb8"; depends=[]; broken = true; }; + RLHub = derive2 { name="RLHub"; version="1.6.0"; sha256="1lx4w9m5ddzx3v4ky7yxiq7ydd0dl7xfh9fcmf53apc6fnql13h2"; depends=[AnnotationHub ExperimentHub]; broken = true; }; RNASeqRData = derive2 { name="RNASeqRData"; version="1.16.0"; sha256="17c5fvyqxdsg7wl0hy0i28z0kf2lmjg36lfrmsv51kzklsc6ykrp"; depends=[]; broken = true; }; + SCATEData = derive2 { name="SCATEData"; version="1.10.0"; sha256="0p0y8mkcg99dpwvp7spxx047kyr7mdflnnlfpb4i232q0yxz2z03"; depends=[ExperimentHub GenomicAlignments GenomicRanges]; broken = true; }; + alpineData = derive2 { name="alpineData"; version="1.26.0"; sha256="1337y1y8q5y8yh2r2bji8fz3nhcxbn5s6pfnnkb8kvg8r0avgmkz"; depends=[AnnotationHub ExperimentHub GenomicAlignments]; broken = true; }; brainImageRdata = derive2 { name="brainImageRdata"; version="1.12.0"; sha256="072x7yn1ambf6hfpir6qdxl8bybv64blpbi1jdp0bvqlk66zs7zv"; depends=[ExperimentHub]; broken = true; }; gatingMLData = derive2 { name="gatingMLData"; version="2.38.0"; sha256="1dhm48nrh1y0x6p50045cn6f21bg35i0b4z7bjymn9aw0n9r5fyk"; depends=[]; broken = true; }; plasFIA = derive2 { name="plasFIA"; version="1.26.0"; sha256="0vbqjbfc75pb2gk49sl6aihmvcc38ylngyr1bgdvdxr0xh11imv0"; depends=[proFIA]; broken = true; }; ppiData = derive2 { name="ppiData"; version="0.34.0"; sha256="10xbp12wim5kj1h2vkxn9x22fd92s2038w653y81jwbh2hyidybf"; depends=[AnnotationDbi graph]; broken = true; }; + pwrEWAS_data = derive2 { name="pwrEWAS.data"; version="1.14.0"; sha256="1bldyvjsv5wwzasg9sbsivyi7m2ypc17mqjglsl22fjkykm92h4s"; depends=[ExperimentHub]; broken = true; }; tcgaWGBSData_hg19 = derive2 { name="tcgaWGBSData.hg19"; version="1.12.0"; sha256="1kmh4iyh2h7vc1mlwb3sridn4nwkqdschz5md5dk53mxkn2wxcmi"; depends=[bsseq ExperimentHub knitr]; broken = true; }; } diff --git a/pkgs/development/r-modules/bioc-packages.nix b/pkgs/development/r-modules/bioc-packages.nix index 0c40df1601543..2cf80ed066605 100644 --- a/pkgs/development/r-modules/bioc-packages.nix +++ b/pkgs/development/r-modules/bioc-packages.nix @@ -4,2251 +4,2290 @@ # Rscript generate-r-packages.R bioc >new && mv new bioc-packages.nix { self, derive }: -let derive2 = derive { biocVersion = "3.17"; }; +let derive2 = derive { biocVersion = "3.18"; }; in with self; { - ABSSeq = derive2 { name="ABSSeq"; version="1.54.0"; sha256="1my2slp88qpb15qidjd646hlslvn8brv6i553h21c4c76jzxzsiz"; depends=[limma locfit]; }; - ABarray = derive2 { name="ABarray"; version="1.68.0"; sha256="0vrsyx06acdkb3hq350zdnx3bqzz43grf1w8n0pmxlcr2dncchv9"; depends=[Biobase multtest]; }; - ACE = derive2 { name="ACE"; version="1.18.0"; sha256="158v25ivbmsh54ywb5spfsd1nrmvfq83s8fkp14i7q5ckr2kvjhm"; depends=[Biobase GenomicRanges ggplot2 QDNAseq]; }; - ACME = derive2 { name="ACME"; version="2.56.0"; sha256="1z6j4wy355pljn9wf12zzq4zqrhaik0i2phy7jg89jsys7n2mlxy"; depends=[Biobase BiocGenerics]; }; - ADAM = derive2 { name="ADAM"; version="1.16.0"; sha256="1hy7xdf6v2fqggvc9rdl90gn0l6vfbmvb23c61i8q45s3qsaxksp"; depends=[dplyr DT GO_db KEGGREST knitr pbapply Rcpp stringr SummarizedExperiment]; }; - ADAMgui = derive2 { name="ADAMgui"; version="1.16.0"; sha256="0jc0sbmmc98z75x73ns3qwcvklvx73wqla87cki8sls6ywa8w93j"; depends=[ADAM colorRamps data_table dplyr DT ggplot2 ggpubr ggrepel ggsignif GO_db gridExtra knitr RColorBrewer reshape2 shiny shinyjs stringi stringr testthat varhandle]; }; - ADImpute = derive2 { name="ADImpute"; version="1.10.0"; sha256="0a3r4bkf6g28lgsq21077ag9ba6zrfv6yflawx9fg73zdx4266jp"; depends=[BiocParallel checkmate data_table DrImpute kernlab MASS Matrix rsvd S4Vectors SAVER SingleCellExperiment SummarizedExperiment]; }; - ADaCGH2 = derive2 { name="ADaCGH2"; version="2.40.0"; sha256="1mmckrxhv23kl3g4d3n4hfdm97sfg2k36khzy9i6d73g7c033hsv"; depends=[aCGH bit cluster DNAcopy ff GLAD snapCGH tilingArray waveslim]; }; - AGDEX = derive2 { name="AGDEX"; version="1.48.0"; sha256="0p9qmwhi4ik24m51cvgxnny4yfqv4v0rvra16bj5d3w9bw9yf3an"; depends=[Biobase GSEABase]; }; - AHMassBank = derive2 { name="AHMassBank"; version="1.0.0"; sha256="09k04n9iql3z6rfsck4jqqd3068g7xrwqmhcx49f65yhmvn81fp6"; depends=[AnnotationHubData]; }; - AIMS = derive2 { name="AIMS"; version="1.32.0"; sha256="1mbwv70ypkb3x086css94m89wq9pqzd23i7nar1844vbqpw3j83q"; depends=[Biobase e1071]; }; - ALDEx2 = derive2 { name="ALDEx2"; version="1.32.0"; sha256="0gdkc8qwx3vpk5i09znlfrag7gk87piz61z90k96v6bm6x8sclb8"; depends=[BiocParallel GenomicRanges IRanges multtest Rfast S4Vectors SummarizedExperiment zCompositions]; }; - AMARETTO = derive2 { name="AMARETTO"; version="1.16.0"; sha256="1yp2npw9mdjy0wchbp0y1r1ifyy63hdz2y3y8cia9c76nfv4627f"; depends=[BiocFileCache callr circlize ComplexHeatmap curatedTCGAData doParallel dplyr DT foreach ggplot2 glmnet gridExtra httr impute knitr limma Matrix matrixStats MultiAssayExperiment Rcpp readr reshape2 rmarkdown tibble]; }; - AMOUNTAIN = derive2 { name="AMOUNTAIN"; version="1.26.0"; sha256="12ml67882lscv05np4m80fg9d48dwkaa6kx5cga6x19kdx6xs2cj"; depends=[]; }; - ANCOMBC = derive2 { name="ANCOMBC"; version="2.2.2"; sha256="0jws3wqgwc0gnp7smc0lsqfw9jbcik36pl7vz9a8ndgwpp9c8653"; depends=[CVXR DescTools doParallel doRNG energy foreach gtools Hmisc lme4 lmerTest MASS Matrix mia multcomp nloptr Rdpack S4Vectors SingleCellExperiment SummarizedExperiment TreeSummarizedExperiment]; }; - ANF = derive2 { name="ANF"; version="1.22.0"; sha256="08vkkfccfq8j4hanxsmjx5657kkw4qcp46qfhqvp1sd6wym69wzw"; depends=[Biobase igraph MASS RColorBrewer survival]; }; - APAlyzer = derive2 { name="APAlyzer"; version="1.14.0"; sha256="1k1nrrcgx4m37z92mjvz48fx645pbsq5wi6w7h9hg0pfpynmgc26"; depends=[DESeq2 dplyr GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel HybridMTest repmis Rsamtools Rsubread rtracklayer SummarizedExperiment tidyr VariantAnnotation]; }; - APL = derive2 { name="APL"; version="1.4.0"; sha256="1rdc6rnb3igckg74c5297436rr4wn5bhh8mgx4scw9mry5rx5q15"; depends=[ggplot2 ggrepel magrittr org_Hs_eg_db org_Mm_eg_db plotly reticulate rlang Seurat SingleCellExperiment SummarizedExperiment topGO viridisLite]; }; - ARRmNormalization = derive2 { name="ARRmNormalization"; version="1.40.0"; sha256="001nwl605prg942vmnbb1rwjwgpscpjs27ssic3h10rlmpb65yzp"; depends=[ARRmData]; }; - ASAFE = derive2 { name="ASAFE"; version="1.26.0"; sha256="05xw42552x7by63psb05hvjraax66flg94i331ca61zx107q7fai"; depends=[]; }; - ASEB = derive2 { name="ASEB"; version="1.44.0"; sha256="1dq6b5rg9iw6hdjmd7g0w64z7cxm52yg1cjyv355qs064dx26nph"; depends=[]; }; - ASGSCA = derive2 { name="ASGSCA"; version="1.34.0"; sha256="0vb37rvrb08qvv0i2k9jnqpajzpj044ww05w3kq1kypbby0c84zs"; depends=[MASS Matrix]; }; - ASICS = derive2 { name="ASICS"; version="2.16.0"; sha256="0svl9wnfn9z88j1yyl30b1f3d14h01x4cga8q04x530723xnjws7"; depends=[BiocParallel ggplot2 glmnet gridExtra Matrix mvtnorm PepsNMR plyr quadprog ropls SummarizedExperiment zoo]; }; - ASSET = derive2 { name="ASSET"; version="2.18.0"; sha256="1vksbfd4wd2xcc0nl3wp53vm0jyqy97p0hqps2aml04745vkg023"; depends=[MASS msm rmeta]; }; - ASSIGN = derive2 { name="ASSIGN"; version="1.36.0"; sha256="0d6g4j4fbhhl3rmmmj0vxhqzgvm832rpc5spkh6alchpc1yzh0wn"; depends=[ggplot2 gplots msm Rlab sva yaml]; }; - ASURAT = derive2 { name="ASURAT"; version="1.4.0"; sha256="1dri69qam591hj555m6sz58lq0dgxn9bm2jyzjnbd63y6d21bqg4"; depends=[circlize cluster ComplexHeatmap plot3D Rcpp S4Vectors SingleCellExperiment SummarizedExperiment]; }; - ASpli = derive2 { name="ASpli"; version="2.10.0"; sha256="0462hf7anpmmqq4585kmjilw1q229r38lijbxq8xg0f3m8xvr1ga"; depends=[AnnotationDbi BiocGenerics BiocStyle data_table DT edgeR GenomicAlignments GenomicFeatures GenomicRanges Gviz htmltools igraph IRanges limma MASS pbmcapply Rsamtools S4Vectors tidyr UpSetR]; }; - ATACCoGAPS = derive2 { name="ATACCoGAPS"; version="1.2.0"; sha256="1vk0iq194pzsjz8v7p7m077r5ngyz6n9kywh49dawdazgc59dyhi"; depends=[BSgenome_Hsapiens_UCSC_hg19 BSgenome_Mmusculus_UCSC_mm10 chromVAR CoGAPS dplyr fgsea GeneOverlap GenomicFeatures GenomicRanges gplots gtools Homo_sapiens IRanges JASPAR2016 motifmatchr msigdbr Mus_musculus projectR rGREAT stringr TFBSTools tidyverse]; }; - ATACseqQC = derive2 { name="ATACseqQC"; version="1.24.0"; sha256="0mcrkmirss484d2mskikyjdz5cmbhdk52yxkffz9g8g5m9lkq5xk"; depends=[BiocGenerics Biostrings BSgenome ChIPpeakAnno edgeR GenomeInfoDb GenomicAlignments GenomicRanges GenomicScores IRanges KernSmooth limma motifStack preseqR randomForest Rsamtools rtracklayer S4Vectors]; }; - ATACseqTFEA = derive2 { name="ATACseqTFEA"; version="1.2.0"; sha256="1q4mcc1frif09n207i13pmlh3wsfnlbz0b7wir2ghb0rx8jkx5gz"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 ggrepel IRanges limma Matrix motifmatchr pracma Rsamtools S4Vectors SummarizedExperiment TFBSTools]; }; - AUCell = derive2 { name="AUCell"; version="1.22.0"; sha256="1zqjmg8nxxj30lxppl685ihynbz44vw7qm3kwjq6cp83c5556hz9"; depends=[BiocGenerics data_table DelayedArray DelayedMatrixStats GSEABase Matrix mixtools R_utils shiny SummarizedExperiment]; }; - AWFisher = derive2 { name="AWFisher"; version="1.14.0"; sha256="1c6rr1z1rhvn8w1kb3nnjlfacfr22vwm1rsa1xqm2hmghs01bq4x"; depends=[edgeR limma]; }; - AffiXcan = derive2 { name="AffiXcan"; version="1.18.0"; sha256="0nf5dkidar6zp5rvpd7i19gdb7mnam9rmca3z3anxi0pdnalwc9d"; depends=[BiocParallel crayon MultiAssayExperiment SummarizedExperiment]; }; - AffyRNADegradation = derive2 { name="AffyRNADegradation"; version="1.46.0"; sha256="14s3kvxcc3qj931bf5ya088flijmn5z89hps3di98kkdsl3w6d4g"; depends=[affy]; }; - AgiMicroRna = derive2 { name="AgiMicroRna"; version="2.50.0"; sha256="1gydc2sy0lf2h83dzr60w9k3ipqd8h62q6764xpn31girwx70rdz"; depends=[affy affycoretools Biobase limma preprocessCore]; }; - AllelicImbalance = derive2 { name="AllelicImbalance"; version="1.38.0"; sha256="1ms3x3x2gvhgllff3nwawg5jlpmgx6dhwll0dghklnv3lssbx4c7"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridExtra Gviz IRanges lattice latticeExtra nlme Rsamtools S4Vectors seqinr SummarizedExperiment VariantAnnotation]; }; - AlphaBeta = derive2 { name="AlphaBeta"; version="1.14.0"; sha256="11431d453xszzjyxr10npnblhlrfw8hl5jgabpxla7cj77w02wnr"; depends=[BiocParallel data_table dplyr expm ggplot2 gtools igraph optimx plotly stringr]; }; - AlpsNMR = derive2 { name="AlpsNMR"; version="4.2.0"; sha256="0rp82y7163pjbl7n6fyywh4l0sgzn1z8kp83v0kg7xk3810mj9sm"; depends=[baseline BiocParallel cli dplyr fs future generics ggplot2 glue htmltools magrittr matrixStats mixOmics pcaPP purrr readxl reshape2 rlang rmarkdown scales signal speaq stringr tibble tidyr tidyselect vctrs]; }; - AnVIL = derive2 { name="AnVIL"; version="1.12.4"; sha256="05wgrr16vaqb7982j7nyri6rrhx90ljgxc37afhw190wc5dj07n0"; depends=[BiocManager dplyr DT futile_logger htmltools httr jsonlite miniUI rapiclient rlang shiny tibble tidyr tidyselect]; }; - AnVILBilling = derive2 { name="AnVILBilling"; version="1.10.0"; sha256="1nxj5yn87qrzb7g8jxbqzjnllshcrfrjf0midn90xfxxj8lsfxpk"; depends=[bigrquery DBI dplyr DT ggplot2 lubridate magrittr plotly shiny shinytoastr]; }; - AnVILPublish = derive2 { name="AnVILPublish"; version="1.10.0"; sha256="1b0v6dx667dpfppf69gwahxgk5sf01fzjkl3qsablqi9w7h8cnab"; depends=[AnVIL httr jsonlite readr rmarkdown whisker yaml]; }; - AnVILWorkflow = derive2 { name="AnVILWorkflow"; version="1.0.1"; sha256="07s3c1c8asfswxsz9hi0sj6mrvdqa1lynsksqr8km3cssdljjf4g"; depends=[AnVIL httr jsonlite]; }; - Anaquin = derive2 { name="Anaquin"; version="2.24.0"; sha256="0f2xc0pm7ld72fnmqirr0q2a5xfh12cag6s2yysblslh9ajyzcmw"; depends=[DESeq2 ggplot2 knitr locfit plyr qvalue ROCR]; }; - AneuFinder = derive2 { name="AneuFinder"; version="1.28.0"; sha256="1l33yb20pynkvlla1dmgbwjhnhxh067fci0ciryxmbzqwq2sn1kc"; depends=[AneuFinderData bamsignals BiocGenerics Biostrings cowplot DNAcopy doParallel ecp foreach GenomeInfoDb GenomicAlignments GenomicRanges ggdendro ggplot2 ggrepel IRanges mclust reshape2 Rsamtools S4Vectors]; }; - AnnotationDbi = derive2 { name="AnnotationDbi"; version="1.62.2"; sha256="0vprm84k79pfnkkg9vf3gyb1nhzmin5lp5375rsaj6fnzbd46dw9"; depends=[Biobase BiocGenerics DBI IRanges KEGGREST RSQLite S4Vectors]; }; - AnnotationFilter = derive2 { name="AnnotationFilter"; version="1.24.0"; sha256="10jkxjmsshrr08c397qvkgrcfwzvrbd2hci1nal4vd5mm77f9cl9"; depends=[GenomicRanges lazyeval]; }; - AnnotationForge = derive2 { name="AnnotationForge"; version="1.42.2"; sha256="0b4dmjv7y50c1rn76wlhnlz93kidvg1byj72vq2s11kdzyq3pmss"; depends=[AnnotationDbi Biobase BiocGenerics DBI RCurl RSQLite S4Vectors XML]; }; - AnnotationHub = derive2 { name="AnnotationHub"; version="3.8.0"; sha256="0ri8qj5j10bhprkb810c2hl5sl944kpb8rf5lab6nxykzgyz73v0"; depends=[AnnotationDbi BiocFileCache BiocGenerics BiocManager BiocVersion curl dplyr httr interactiveDisplayBase rappdirs RSQLite S4Vectors yaml]; }; - AnnotationHubData = derive2 { name="AnnotationHubData"; version="1.30.0"; sha256="109gi5cs82j135q00wg9dfx0z5m9bs1kc7s246ym13ik43z0h3qq"; depends=[AnnotationDbi AnnotationForge AnnotationHub Biobase BiocCheck BiocGenerics BiocManager biocViews Biostrings DBI futile_logger GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges jsonlite OrganismDbi RCurl Rsamtools RSQLite rtracklayer S4Vectors XML]; }; - ArrayExpress = derive2 { name="ArrayExpress"; version="1.60.0"; sha256="1ib33fw379sakk084csa3pwcc3wvba38ily6mmv2ax1wh16i0pfz"; depends=[Biobase httr jsonlite limma oligo rlang]; }; - AssessORF = derive2 { name="AssessORF"; version="1.18.0"; sha256="16nv6sh7z3l6ff3a7zrixkc04mhrak38q045xlirgljkcragz1c5"; depends=[Biostrings DECIPHER GenomicRanges IRanges]; }; - BADER = derive2 { name="BADER"; version="1.38.0"; sha256="0g3yvgrarpdcxpvjrxg0gbdcagknh80cr0xyzinzpmiiz0rywmzc"; depends=[]; }; - BAGS = derive2 { name="BAGS"; version="2.40.0"; sha256="08xln2c99j419vqaia4c05qg7brnhpiwnzpyyq5akf6bqfsk6dky"; depends=[Biobase breastCancerVDX]; }; - BANDITS = derive2 { name="BANDITS"; version="1.16.1"; sha256="04l6iy0sij7zhzswhxjzir3xmrjnp6aapp0a93xp01xiv2sgdzni"; depends=[BiocParallel data_table doParallel doRNG DRIMSeq foreach ggplot2 MASS R_utils Rcpp RcppArmadillo]; }; - BASiCS = derive2 { name="BASiCS"; version="2.12.3"; sha256="0jbrdahc2w8imqsxlyb6vkg0x145dci1vyfqf9d7al11fjhwvvnq"; depends=[assertthat Biobase BiocGenerics BiocParallel coda cowplot ggExtra ggplot2 hexbin MASS Matrix matrixStats posterior Rcpp RcppArmadillo reshape2 S4Vectors scran scuttle SingleCellExperiment SummarizedExperiment viridis]; }; - BASiCStan = derive2 { name="BASiCStan"; version="1.2.0"; sha256="1kazzinvj6shqxkgyin8pwxb9i1wd6m8as0afzl6wl71xllysyla"; depends=[BASiCS BH glmGamPoi Rcpp RcppEigen RcppParallel rstan rstantools scran scuttle SingleCellExperiment StanHeaders SummarizedExperiment]; }; - BBCAnalyzer = derive2 { name="BBCAnalyzer"; version="1.30.0"; sha256="0cc7b9wrx5afrmz0xgbwaksciya622b6q6zkq4x14czqbjn51xpf"; depends=[Biostrings GenomicRanges IRanges Rsamtools SummarizedExperiment VariantAnnotation]; }; - BCRANK = derive2 { name="BCRANK"; version="1.62.0"; sha256="1gk5zw8zvgv867x800r9yd2yxbbxjnbjl4mgn7409qglmm4wx3n8"; depends=[Biostrings]; }; - BDMMAcorrect = derive2 { name="BDMMAcorrect"; version="1.18.1"; sha256="17lsgl5mczfk2flkrclxhsqkkpr6mncccywm68l0z02pi5xhd8j7"; depends=[ape ellipse ggplot2 Rcpp RcppArmadillo RcppEigen SummarizedExperiment vegan]; }; - BEARscc = derive2 { name="BEARscc"; version="1.20.0"; sha256="065z6w1w83wnps61bcn7hxn7vl9nhm6kmlrwhkljpciz1s7g39ga"; depends=[data_table ggplot2 SingleCellExperiment]; }; - BEAT = derive2 { name="BEAT"; version="1.38.0"; sha256="1gqq9ypjgvwq4db5n612gysalp02v2d99kwayb6vl6wy9j264bdw"; depends=[Biostrings BSgenome GenomicRanges ShortRead]; }; - BEclear = derive2 { name="BEclear"; version="2.16.0"; sha256="1sdw69dhrzkcpc7flvp1gkixvpsbrckyg756rlm17hjjwfxlz5lb"; depends=[abind BiocParallel data_table dixonTest futile_logger ids Matrix Rcpp Rdpack]; }; - BG2 = derive2 { name="BG2"; version="1.0.0"; sha256="0qiykg4ljjn5j4xw0p9757rckv2xi0glbhfv8m03drdgngfmnyz1"; depends=[caret GA MASS Matrix memoise]; }; - BGmix = derive2 { name="BGmix"; version="1.59.0"; sha256="16fzgxcy4sk0kd67vzdxqz81s84dvh4bqss9cbl9bn6vhpfsnfyf"; depends=[KernSmooth]; }; - BHC = derive2 { name="BHC"; version="1.52.0"; sha256="0w60h1jr9kwvgg5d6bcrq4gl1aa1v6xrn43ymsc2312019psrrjy"; depends=[]; }; - BLMA = derive2 { name="BLMA"; version="1.24.0"; sha256="0dps76jxfr8d9yca4jgn9mijdh9sa14q5j5z0k423q469ay02bq1"; depends=[Biobase graph GSA limma metafor PADOG ROntoTools]; }; - BOBaFIT = derive2 { name="BOBaFIT"; version="1.4.0"; sha256="11k46qxcdk9nc0n0mrai5zsbhbpqnbbf1jdqyqrxllfr0j3ixa8y"; depends=[dplyr GenomicRanges ggbio ggforce ggplot2 magrittr NbClust plyranges stringr tidyr]; }; - BPRMeth = derive2 { name="BPRMeth"; version="1.26.1"; sha256="0if5x0b2gyifnhyrjcf2z4csc7n4hb4yikh19mgy3iii3ix2psfj"; depends=[assertthat BiocStyle cowplot data_table doParallel e1071 earth foreach GenomicRanges ggplot2 IRanges kernlab magrittr MASS matrixcalc mvtnorm randomForest Rcpp RcppArmadillo S4Vectors truncnorm]; }; - BRAIN = derive2 { name="BRAIN"; version="1.46.0"; sha256="016dg1jadjqwdyrkzfpahyhfpfmrks5fpllgza7ccj2ibps74l8m"; depends=[Biostrings lattice PolynomF]; }; - BRGenomics = derive2 { name="BRGenomics"; version="1.12.0"; sha256="1x97l2dww8za8nhc8zllpzgbdm3mdnwqhyd7lwa8sr20m5n090gn"; depends=[DESeq2 GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; - BSgenome = derive2 { name="BSgenome"; version="1.68.0"; sha256="0fx2mkzyhbn8iayw14nr913wd4xhp76b1zjb85akrxaab2dm4zz8"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges IRanges matrixStats Rsamtools rtracklayer S4Vectors XVector]; }; - BSgenomeForge = derive2 { name="BSgenomeForge"; version="1.0.1"; sha256="0cm268r4lnjvx3fkr8d9yaxmimrcjznffjg38bl7myd0wf2zs6pb"; depends=[Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb IRanges rtracklayer S4Vectors]; }; - BUMHMM = derive2 { name="BUMHMM"; version="1.24.0"; sha256="0rnggyl7zklia8ra5qbb769x8920lk85aas7fv0c2b3y44dkl7w8"; depends=[Biostrings devtools gtools IRanges stringi SummarizedExperiment]; }; - BUS = derive2 { name="BUS"; version="1.56.0"; sha256="1vk6b5f6kw0fywai7wmm6h7fzmbxz9z95ma8g3d1kqafyzs7rnhv"; depends=[infotheo minet]; }; - BUScorrect = derive2 { name="BUScorrect"; version="1.18.0"; sha256="0zjpjfq5561jjm3zkwxf76zwfqx4h01di1f96zig6qgj0vjc5b59"; depends=[gplots SummarizedExperiment]; }; - BUSpaRse = derive2 { name="BUSpaRse"; version="1.14.1"; sha256="12mdzbf3bk5q1l2ba6rjkq8aql246mg3zkb8amssaq9xw6pp90gf"; depends=[AnnotationDbi AnnotationFilter BH BiocGenerics biomaRt Biostrings BSgenome dplyr ensembldb GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges magrittr Matrix plyranges Rcpp RcppArmadillo RcppProgress S4Vectors stringr tibble tidyr zeallot]; }; - BUSseq = derive2 { name="BUSseq"; version="1.6.1"; sha256="0dhnc2cs4vrl7ghf3zkli6ri9l1g7am0kr8ph9zc83mw4h1y48wb"; depends=[gplots S4Vectors SingleCellExperiment SummarizedExperiment]; }; - BaalChIP = derive2 { name="BaalChIP"; version="1.26.0"; sha256="0bp8p7cn59iv08cf4yw9xl1f83dcr6v1kqvggxjals8y4gmls9nz"; depends=[coda doBy doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges reshape2 Rsamtools scales]; }; - BadRegionFinder = derive2 { name="BadRegionFinder"; version="1.28.0"; sha256="04bzb3i461gwkq9ygkjljpjk32c3arqr08hfzxyig1sarrryzl3q"; depends=[biomaRt GenomicRanges Rsamtools S4Vectors VariantAnnotation]; }; - BaseSpaceR = derive2 { name="BaseSpaceR"; version="1.44.0"; sha256="15aqf2s51gl6gcnv24170v9hlq1vgya58qh1f5vjmark7j2k8vvm"; depends=[RCurl RJSONIO]; }; - Basic4Cseq = derive2 { name="Basic4Cseq"; version="1.36.0"; sha256="0rywqfvb5bya6imxy39h6pn7a6zb4gqsgk9mxn5rnbpksql713fx"; depends=[Biostrings BSgenome_Ecoli_NCBI_20080805 caTools GenomicAlignments GenomicRanges RCircos]; }; - BasicSTARRseq = derive2 { name="BasicSTARRseq"; version="1.28.0"; sha256="13jn7dz9sp6n456r0n1zkwpqd5qxm627picn4f05cvim9yakak4v"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges S4Vectors]; }; - BatchQC = derive2 { name="BatchQC"; version="1.28.0"; sha256="1gcihwwh8h6hdv8hpwrh5y2hxlhw01axbzch0w41a0434bb58a3j"; depends=[corpcor ggvis gplots heatmaply knitr limma Matrix matrixStats MCMCpack moments pander reshape2 rmarkdown shiny sva]; }; - BayesKnockdown = derive2 { name="BayesKnockdown"; version="1.26.0"; sha256="08ff13wdfxkywfabsz2qnmky87za63j5i1rh6jz1x73acncmj6i7"; depends=[Biobase]; }; - BayesSpace = derive2 { name="BayesSpace"; version="1.10.1"; sha256="1vf1qk19708vxxlcqzw2crxzxvfxh0d7svm2vsv54614safzirxf"; depends=[assertthat BiocFileCache BiocSingular coda DirichletReg ggplot2 Matrix mclust purrr Rcpp RcppArmadillo RcppDist RcppProgress RCurl rhdf5 S4Vectors scales scater scran SingleCellExperiment SummarizedExperiment xgboost]; }; - BeadDataPackR = derive2 { name="BeadDataPackR"; version="1.52.0"; sha256="0hm4brxg2rxazdcnhjiz6f4di2q8wssrrp35m79vm93sac9w42y3"; depends=[]; }; - BgeeCall = derive2 { name="BgeeCall"; version="1.16.0"; sha256="0j83scxpq51bhxwfps7chcawzsqrd7pk7x2jg29zj4zbp1jbrnl0"; depends=[biomaRt Biostrings data_table dplyr GenomicFeatures jsonlite rhdf5 rslurm rtracklayer sjmisc tximport]; }; - BgeeDB = derive2 { name="BgeeDB"; version="2.26.0"; sha256="1s6v17bavidlfy6habi4bv6lmwkrx8c5was1zcq0kb05qdvpn4ph"; depends=[Biobase curl data_table digest dplyr graph R_utils RCurl RSQLite tidyr topGO]; }; - BiFET = derive2 { name="BiFET"; version="1.20.0"; sha256="05lwz2pw2vnhmlhp5vv9j45jrc5ssdw4lx6mkxnsvds8zl3y9294"; depends=[GenomicRanges poibin]; }; - BiGGR = derive2 { name="BiGGR"; version="1.36.0"; sha256="03pd4a3l912zdfk35flagikqimp01wp76nslid32l43d7yg9p57w"; depends=[hyperdraw hypergraph LIM limSolve rsbml stringr]; }; - BiRewire = derive2 { name="BiRewire"; version="3.32.0"; sha256="1741raw1834093y5zhgx9jywfgz0wl0idlkynvab2c8vi40kc9a8"; depends=[igraph Matrix Rtsne slam]; }; - BiSeq = derive2 { name="BiSeq"; version="1.40.0"; sha256="1ckk6gf7i1gxbl5k128x7r454vz0xvyjd8bdzagh81d7qvajg19y"; depends=[betareg Biobase BiocGenerics Formula GenomeInfoDb GenomicRanges globaltest IRanges lokern rtracklayer S4Vectors SummarizedExperiment]; }; - BicARE = derive2 { name="BicARE"; version="1.58.0"; sha256="1q7dsvj6nvczs76jcxyy77298vgk4zk083bldmbbgnwparrgjii9"; depends=[Biobase GO_db GSEABase multtest]; }; - BindingSiteFinder = derive2 { name="BindingSiteFinder"; version="1.6.0"; sha256="1659idmjr7n1771xj0jam7d7wjljfgbmhzrs53gdkayagr4zqj76"; depends=[dplyr GenomeInfoDb GenomicRanges ggforce ggplot2 Gviz matrixStats plyr rtracklayer S4Vectors tibble tidyr]; }; - BioCor = derive2 { name="BioCor"; version="1.24.0"; sha256="1aw8yh9l0jbjvkqgyzyr0wmwjh3ppmb0lwg8hxsfcv52ycsmvk7p"; depends=[BiocParallel GSEABase Matrix]; }; - BioMM = derive2 { name="BioMM"; version="1.15.0"; sha256="01lfw0npcclcyqqh2xkhjq9jw0irbk13fsj5y1b3rz1amzzngg6p"; depends=[BiocParallel CMplot e1071 ggplot2 glmnet imager lattice nsprcomp precrec ranger rms topGO vioplot xlsx]; }; - BioMVCClass = derive2 { name="BioMVCClass"; version="1.68.0"; sha256="07iay2dpq3margh1ny2snlc75g7fpfs5bf2gmhv88d31b8blg57r"; depends=[Biobase graph MVCClass Rgraphviz]; }; - BioNAR = derive2 { name="BioNAR"; version="1.2.5"; sha256="0xpk3h7hpmmmcxay2w5i4by5vccxbx8rnlkxpmg2hgx0cf29vpfx"; depends=[AnnotationDbi clusterCons cowplot data_table dplyr fgsea ggplot2 ggrepel GO_db igraph latex2exp minpack_lm org_Hs_eg_db poweRlaw Rdpack RSpectra rSpectral scales stringr synaptome_db viridis WGCNA]; }; - BioNERO = derive2 { name="BioNERO"; version="1.8.7"; sha256="0yvd05yikvblnhimnmn4srcsimab4qml5k582n0c9h4rppffmvy4"; depends=[BiocParallel ComplexHeatmap dynamicTreeCut GENIE3 ggdendro ggnetwork ggplot2 ggrepel igraph intergraph matrixStats minet NetRep patchwork RColorBrewer reshape2 rlang SummarizedExperiment sva WGCNA]; }; - BioNet = derive2 { name="BioNet"; version="1.60.0"; sha256="19caj3aj6gndkxkrd9s2x8v59hcdwdyxrx0ji473c3d5qrykskl1"; depends=[AnnotationDbi Biobase graph igraph RBGL]; }; - BioNetStat = derive2 { name="BioNetStat"; version="1.20.0"; sha256="0bvfgppsdih6s70iizd7zh3zkb0hg4s4h1728xmyjqbvkl8fsdf4"; depends=[BiocParallel DT ggplot2 Hmisc igraph knitr markdown pathview pheatmap plyr psych RColorBrewer RJSONIO rmarkdown shiny shinyBS whisker yaml]; }; - BioQC = derive2 { name="BioQC"; version="1.28.0"; sha256="0g6imi03l4xm0chx3i9wd2vdy0ls78lnylp294fq0jldl4n6y0nw"; depends=[Biobase edgeR Rcpp]; }; - BioTIP = derive2 { name="BioTIP"; version="1.14.0"; sha256="0lqnxaycrva2092h4swmk6na2pq2kp951dmicyw399djd1i7yj50"; depends=[cluster GenomicRanges igraph MASS psych scran stringr]; }; - Biobase = derive2 { name="Biobase"; version="2.60.0"; sha256="1xjs5nxr3dffllp599hf0cx71a2czqmhf7zj2sp6rz06kcxib905"; depends=[BiocGenerics]; }; - BiocBaseUtils = derive2 { name="BiocBaseUtils"; version="1.2.0"; sha256="143fmjbi8spaj3njvc1xvsjszfxs7bv3vxik8pisw5y8lqzx7hqm"; depends=[]; }; - BiocCheck = derive2 { name="BiocCheck"; version="1.36.1"; sha256="0a0fnmqln13iglnw8smbbr4k7hdvacipxa04zhqylygpsq1246bc"; depends=[BiocFileCache BiocManager biocViews codetools graph httr knitr stringdist]; }; - BiocDockerManager = derive2 { name="BiocDockerManager"; version="1.11.0"; sha256="0w393f14i253pnk0jzf2ci4g5cnxshwdjmix2r8arlnadh7spjyk"; depends=[dplyr httr memoise readr whisker]; }; - BiocFHIR = derive2 { name="BiocFHIR"; version="1.2.0"; sha256="1i2yi3430gb5zhfap2yiwhwmgy34011hdk5gycb722342sl99hw4"; depends=[BiocBaseUtils dplyr DT graph jsonlite shiny tidyr visNetwork]; }; - BiocFileCache = derive2 { name="BiocFileCache"; version="2.8.0"; sha256="1qk1n50arlk0mfkv9p3zl3lqbapzfkjdbadv51hsp4h9lyaw9sbg"; depends=[curl DBI dbplyr dplyr filelock httr RSQLite]; }; - BiocGenerics = derive2 { name="BiocGenerics"; version="0.46.0"; sha256="19kwpis282i8x31xlh8nc3z6vvn23p3wpx7wmrqhclf8ymq61c7z"; depends=[]; }; - BiocHail = derive2 { name="BiocHail"; version="1.0.1"; sha256="1qn7hi7lkq3q17m7f7jb7amkph2xi7mz18yc9xgwc9hw507kr9wg"; depends=[basilisk BiocFileCache BiocGenerics dplyr reticulate]; }; - BiocHubsShiny = derive2 { name="BiocHubsShiny"; version="1.0.0"; sha256="0rb73yi26wqayh5p1mf0nygpa9qyydasflc9whrvsafy8g4cfjy7"; depends=[AnnotationHub DT ExperimentHub htmlwidgets S4Vectors shiny shinyAce shinyjs shinythemes shinytoastr]; }; - BiocIO = derive2 { name="BiocIO"; version="1.10.0"; sha256="03hslg7k6khchf54gmlbkvwbkfn5ppz0wp7lh75gsnr0licsjkwx"; depends=[BiocGenerics S4Vectors]; }; - BiocNeighbors = derive2 { name="BiocNeighbors"; version="1.18.0"; sha256="1i4b37n9darizfq9i4vvbnxgrwhkvvd25a4cpfjv7nqywjfbsfjd"; depends=[BiocParallel Matrix Rcpp RcppHNSW S4Vectors]; }; - BiocOncoTK = derive2 { name="BiocOncoTK"; version="1.20.0"; sha256="11135a4l0vn84qmpyclz052zy45s0m38av94604jqxgb51q9lwyf"; depends=[bigrquery car ComplexHeatmap curatedTCGAData DBI dplyr DT GenomicFeatures GenomicRanges ggplot2 ggpubr graph httr IRanges magrittr MASS plyr Rgraphviz rjson S4Vectors scales shiny SummarizedExperiment]; }; - BiocParallel = derive2 { name="BiocParallel"; version="1.34.2"; sha256="0j0yi0g0zri0liy9xm2j3k848smhib5mmkvwcw6281iwnpn7yypq"; depends=[BH codetools cpp11 futile_logger snow]; }; - BiocPkgTools = derive2 { name="BiocPkgTools"; version="1.18.1"; sha256="16d0sjkzagc0jxha28qxplg6iihwg2q05sig0s1291lm7kh5k9j8"; depends=[BiocFileCache BiocManager biocViews dplyr DT gh graph htmltools htmlwidgets httr igraph jsonlite magrittr RBGL readr rlang rorcid rvest stringr tibble xml2]; }; - BiocSet = derive2 { name="BiocSet"; version="1.14.0"; sha256="1q5794gsinpy9hv5n1vx79bkqxi1jxzxjl95jlw9pqjmlnki07i5"; depends=[AnnotationDbi BiocIO dplyr KEGGREST ontologyIndex plyr rlang S4Vectors tibble tidyr]; }; - BiocSingular = derive2 { name="BiocSingular"; version="1.16.0"; sha256="1a33zsw353pryq30178sbj9jzsmb4m7spqbx11hsicri8s1c0lb9"; depends=[beachmat BiocGenerics BiocParallel DelayedArray irlba Matrix Rcpp rsvd S4Vectors ScaledMatrix]; }; - BiocSklearn = derive2 { name="BiocSklearn"; version="1.22.0"; sha256="0ggzln6ld4a4a3n2swssm11saj0pnqgsfibd0w1aa4k0q2i5m3dy"; depends=[basilisk reticulate SummarizedExperiment]; }; - BiocStyle = derive2 { name="BiocStyle"; version="2.28.1"; sha256="11v3gzy88fai0rhdymvj9k74g7hjc6n9fihfrrnw0qfr447z1d61"; depends=[BiocManager bookdown knitr rmarkdown yaml]; }; - BiocVersion = derive2 { name="BiocVersion"; version="3.17.1"; sha256="0n29adnb62agp9li8rmn68z653d2m41iy9zjz75h43a05drlgp33"; depends=[]; }; - BiocWorkflowTools = derive2 { name="BiocWorkflowTools"; version="1.26.0"; sha256="1zvjj0hpqwdv7yifqwyb14166ppxw91d964gz4xclism5z5lvyln"; depends=[BiocStyle bookdown git2r httr knitr rmarkdown rstudioapi stringr usethis]; }; - Biostrings = derive2 { name="Biostrings"; version="2.68.1"; sha256="13cnjbq2iykv83ycb4151d7yys21s3v15fc72v3s02m1i92lqyq4"; depends=[BiocGenerics crayon GenomeInfoDb IRanges S4Vectors XVector]; }; - BloodGen3Module = derive2 { name="BloodGen3Module"; version="1.8.0"; sha256="167wpz0s9xlgpp1d3rfy7p76wgmsqlxcj9g7dbz3y0qv7iilngck"; depends=[circlize ComplexHeatmap ExperimentHub ggplot2 gtools limma matrixStats preprocessCore randomcoloR reshape2 SummarizedExperiment testthat V8]; }; - BridgeDbR = derive2 { name="BridgeDbR"; version="2.10.2"; sha256="11rjv5dlkyjsq43b9yi80mf8imxigqmlrzhk7v65j9lq7kdlcd7d"; depends=[curl rJava]; }; - BrowserViz = derive2 { name="BrowserViz"; version="2.22.0"; sha256="14ddcfl73bi4ivd6wqp9xfxaf7fx89gh6qzf91psj44vyvzmdar3"; depends=[BiocGenerics httpuv jsonlite]; }; - BubbleTree = derive2 { name="BubbleTree"; version="2.30.0"; sha256="17c97x8g34fqsq3cnj4cp4cjignn7d8m31k1msinxy92kndij3sw"; depends=[Biobase BiocGenerics BiocStyle biovizBase dplyr e1071 GenomicRanges ggplot2 gridExtra gtable gtools IRanges limma magrittr plyr RColorBrewer WriteXLS]; }; - BufferedMatrix = derive2 { name="BufferedMatrix"; version="1.64.0"; sha256="0sjz4ymqdn57l6cr0968w5nbhp5fm386cf2waxph8n7s1w4lraf3"; depends=[]; }; - BufferedMatrixMethods = derive2 { name="BufferedMatrixMethods"; version="1.64.0"; sha256="064h61zik7d7d4lhzs5s60d4dxcd62r6wn5kskf77s1s8g87c62r"; depends=[BufferedMatrix]; }; - BumpyMatrix = derive2 { name="BumpyMatrix"; version="1.8.0"; sha256="021xn5d08phmwv6g8a5d4ap5kcf5syhm6vpr784l4k54lflssr5i"; depends=[IRanges Matrix S4Vectors]; }; - CAEN = derive2 { name="CAEN"; version="1.8.0"; sha256="050wqvjkayrrlcghqbh8i9myq6wrl86h85mjzdbaszba4nzkhl0a"; depends=[PoiClaClu SummarizedExperiment]; }; - CAFE = derive2 { name="CAFE"; version="1.36.0"; sha256="1l8ynhhs6q141ca83l2vca1nyaizi9dh89p1gwhl95ay17hwbkqj"; depends=[affy annotate Biobase biovizBase GenomicRanges ggbio ggplot2 gridExtra IRanges]; }; - CAGEfightR = derive2 { name="CAGEfightR"; version="1.20.0"; sha256="1a2a2ksmmd1gm016lbyxc76csasp949lx35x1cidlvak03w5fh3k"; depends=[assertthat BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicInteractions GenomicRanges Gviz InteractionSet IRanges Matrix pryr rtracklayer S4Vectors SummarizedExperiment]; }; - CAGEr = derive2 { name="CAGEr"; version="2.6.1"; sha256="1dp303rk8zja2gj1q4f76251p4hlvihz1nwpwl0vkhiacx4vwg8r"; depends=[BiocGenerics BiocParallel BSgenome CAGEfightR data_table DelayedArray DelayedMatrixStats formula_tools GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges KernSmooth memoise MultiAssayExperiment plyr reshape2 Rsamtools rtracklayer S4Vectors som stringdist stringi SummarizedExperiment vegan VGAM]; }; - CAMERA = derive2 { name="CAMERA"; version="1.56.0"; sha256="1asp5950fjr3xq5b1h3ma7jg6190w217mlxikxdp7kxgj7pkwmly"; depends=[Biobase graph Hmisc igraph RBGL xcms]; }; - CARNIVAL = derive2 { name="CARNIVAL"; version="2.10.0"; sha256="1drxd6xhsbxw9c7hbcq1kq5zda8ma0pmp19bfpahx3vxgmac8h19"; depends=[dplyr igraph lpSolve readr rjson rmarkdown stringr tibble tidyr]; }; - CATALYST = derive2 { name="CATALYST"; version="1.24.0"; sha256="0f6h0qngv7my83k402rydvi1pla695r5kxq02k1s5caxcsi1caza"; depends=[circlize ComplexHeatmap ConsensusClusterPlus cowplot data_table dplyr drc flowCore FlowSOM ggplot2 ggrepel ggridges gridExtra magrittr Matrix matrixStats nnls purrr RColorBrewer reshape2 Rtsne S4Vectors scales scater SingleCellExperiment SummarizedExperiment]; }; - CBEA = derive2 { name="CBEA"; version="1.3.0"; sha256="0yrqrdyx5ccwc7ib5sc7ahvahgfgaj50pqk1az1ac07qm3yj098z"; depends=[BiocParallel BiocSet dplyr fitdistrplus generics glue goftest lmom magrittr mixtools Rcpp rlang SummarizedExperiment tibble tidyr TreeSummarizedExperiment]; }; - CBNplot = derive2 { name="CBNplot"; version="1.0.0"; sha256="1d46jjzby2i98brd717rffk5jin6j2gg56pj4iv5xmcdyqmq6wak"; depends=[BiocFileCache bnlearn clusterProfiler depmap dplyr enrichplot ExperimentHub ggdist ggforce ggplot2 ggraph graphite graphlayouts igraph magrittr oaqc org_Hs_eg_db patchwork purrr pvclust reshape2 rlang Rmpfr stringr tidyr]; }; - CCPROMISE = derive2 { name="CCPROMISE"; version="1.26.0"; sha256="1qhi3g2yqnps474whi0c1k69sn9bbv11q38v9s6vad0dk5swfg24"; depends=[Biobase CCP GSEABase PROMISE]; }; - CEMiTool = derive2 { name="CEMiTool"; version="1.24.0"; sha256="128bvfzb5jr1ksi3ac8yq42q92pgfy17rc5ljlsg9cqyyfvfhdz2"; depends=[clusterProfiler data_table dplyr DT fastcluster fgsea ggdendro ggplot2 ggpmisc ggrepel ggthemes gridExtra gtable htmltools igraph intergraph knitr matrixStats network pracma rmarkdown scales sna stringr WGCNA]; }; - CFAssay = derive2 { name="CFAssay"; version="1.34.0"; sha256="1sk4c8l7lw35rcr9vsfx791khlna4widbkrjwpcyrkmwp0xmbj45"; depends=[]; }; - CGEN = derive2 { name="CGEN"; version="3.36.1"; sha256="1g3xwfwqa4r4198m76mgbs59b6lpfyah2ylq5aapi51h4vyk29p9"; depends=[mvtnorm survival]; }; - CGHbase = derive2 { name="CGHbase"; version="1.60.0"; sha256="1r050acahvfp2ib88sy9xj4yjzy2d8h73hndi1s075h0zv12mjj7"; depends=[Biobase marray]; }; - CGHcall = derive2 { name="CGHcall"; version="2.62.0"; sha256="02d8j0al062k33h6n3ihn7kwbqp3pjwg9zzbr45ay1m1jm6bappi"; depends=[Biobase CGHbase DNAcopy impute snowfall]; }; - CGHnormaliter = derive2 { name="CGHnormaliter"; version="1.54.0"; sha256="0ch8ql537fmzg7clwmmxiwginmzvg3py2ypgcjz3mb7jjr3zihcd"; depends=[Biobase CGHbase CGHcall]; }; - CGHregions = derive2 { name="CGHregions"; version="1.58.0"; sha256="0y0mgwfls15z17wyf02i2zlk9kycfcw9qgc2vxgf2b5dqjdf96as"; depends=[Biobase CGHbase]; }; - CHETAH = derive2 { name="CHETAH"; version="1.16.0"; sha256="19qaaczi87jy2g4wimlcdpalfflk8l8jpfsnimbi71gjm0sprq7m"; depends=[bioDist corrplot cowplot dendextend ggplot2 pheatmap plotly reshape2 S4Vectors shiny SingleCellExperiment SummarizedExperiment]; }; - CHRONOS = derive2 { name="CHRONOS"; version="1.28.0"; sha256="1gjrzvjray5q3cpgnwhznchq3kb2ld9cfys8rrggn8dmfpazfxb0"; depends=[biomaRt circlize doParallel foreach graph igraph openxlsx RBGL RCurl rJava XML]; }; - CIMICE = derive2 { name="CIMICE"; version="1.8.0"; sha256="0k0w3bhgiry22pmmdcxjfvq4fvrj6k8q473xad87mv8dssp1zxh1"; depends=[assertthat dplyr expm ggcorrplot ggplot2 ggraph glue igraph maftools Matrix networkD3 purrr tidygraph tidyr visNetwork]; }; - CINdex = derive2 { name="CINdex"; version="1.28.0"; sha256="0s8iarpci8cnrq7p29vrbw4sw5i27kc0j18xr07fhmw7134gbjz8"; depends=[bitops dplyr GenomeInfoDb GenomicRanges gplots gridExtra IRanges png S4Vectors som stringr]; }; - CMA = derive2 { name="CMA"; version="1.58.0"; sha256="0yq99brrgjz804r7cbqr4w304lk4pf77v96ya91b9di7z2vv6ahk"; depends=[Biobase]; }; - CNAnorm = derive2 { name="CNAnorm"; version="1.46.1"; sha256="1x3fr0xh0jfg1m7lcgdj04yywnlldk1b4fd455gb5l24dnikwak5"; depends=[DNAcopy]; }; - CNEr = derive2 { name="CNEr"; version="1.36.0"; sha256="04arfcr2ay71hyy0xsh6jzappmcnnzfr1nyj1l7dqhhhk81ksjfd"; depends=[annotate BiocGenerics Biostrings DBI GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 GO_db IRanges KEGGREST poweRlaw R_utils readr reshape2 RSQLite rtracklayer S4Vectors XVector]; }; - CNORdt = derive2 { name="CNORdt"; version="1.42.0"; sha256="116bpjdq7633lrfi2znlrpjv8w1k7v0qpnia9ccpjzg3xs7z0qjq"; depends=[abind CellNOptR]; }; - CNORfeeder = derive2 { name="CNORfeeder"; version="1.40.0"; sha256="0lpbkcxh0430jhrjmcnsxmh9jlrbzf5xp81mb73kqyv49amk0c4c"; depends=[CellNOptR graph]; }; - CNORfuzzy = derive2 { name="CNORfuzzy"; version="1.42.0"; sha256="1pnrzlnnm6chi03p5mnrq86hyqlvlk9amr9z8wm8j8q2qm97ifvl"; depends=[CellNOptR nloptr]; }; - CNORode = derive2 { name="CNORode"; version="1.42.0"; sha256="116hqc5vwds4bkifbh6wz19fm624kn3fz1dfq5283d3jxrwdpsic"; depends=[CellNOptR genalg knitr]; }; - CNTools = derive2 { name="CNTools"; version="1.56.0"; sha256="0b3wxywc6dm91n0l9k4amm1517a2hn5vzs82glc877q5l0kwmkdc"; depends=[genefilter]; }; - CNVMetrics = derive2 { name="CNVMetrics"; version="1.4.0"; sha256="08vavilwfxgzyrl28z5da37yz9iwgfqnnmfhwylgz6m6k1h2vcv2"; depends=[BiocParallel GenomicRanges gridExtra IRanges magrittr pheatmap S4Vectors]; }; - CNVPanelizer = derive2 { name="CNVPanelizer"; version="1.32.0"; sha256="0adhi9d5cm7fqq9qzwy7s4gqbiy65jk167f9k3fdml0sgri5m7iy"; depends=[BiocGenerics exomeCopy foreach GenomeInfoDb GenomicRanges ggplot2 gplots IRanges NOISeq openxlsx plyr reshape2 Rsamtools S4Vectors shiny shinyFiles shinyjs stringr testthat]; }; - CNVRanger = derive2 { name="CNVRanger"; version="1.16.5"; sha256="14cp8dnn5q1yvgqv0rrwgagznbfcf2m5mzz1687h99c0fbvz7qlv"; depends=[BiocGenerics BiocParallel data_table edgeR GDSArray gdsfmt GenomeInfoDb GenomicRanges IRanges lattice limma plyr qqman RaggedExperiment rappdirs reshape2 S4Vectors SNPRelate SummarizedExperiment]; }; - CNVfilteR = derive2 { name="CNVfilteR"; version="1.14.0"; sha256="1nim8vi5y4d3iq3szzj7qsxc0msb93p65415pflx6ai3i0rzvd4k"; depends=[assertthat Biostrings CopyNumberPlots GenomeInfoDb GenomicRanges IRanges karyoploteR pracma regioneR Rsamtools SummarizedExperiment VariantAnnotation]; }; - CNVgears = derive2 { name="CNVgears"; version="1.8.0"; sha256="1p7dxzkna3czkpsidj586hfwhymrjwvjr6q5f2pq7zlmpn6f8svx"; depends=[data_table ggplot2]; }; - CNViz = derive2 { name="CNViz"; version="1.8.0"; sha256="1wg8yhc4g8dcs1lm9r1xh1wjmc7x7i0qp5wrp5yp1f0kn4lsz7g2"; depends=[CopyNumberPlots dplyr DT GenomicRanges karyoploteR magrittr plotly scales shiny]; }; - CNVrd2 = derive2 { name="CNVrd2"; version="1.38.0"; sha256="1qqgsibb5190c29q01ns8z26gsmkjn8vka2yygv6gv9a3jz4gk9c"; depends=[DNAcopy ggplot2 gridExtra IRanges rjags Rsamtools VariantAnnotation]; }; - COCOA = derive2 { name="COCOA"; version="2.14.0"; sha256="04gh7i719ff5zmmc4bsjqpdq1asjvn1yj51qg7cz41ssmgwhkr8q"; depends=[Biobase BiocGenerics ComplexHeatmap data_table fitdistrplus GenomicRanges ggplot2 IRanges MIRA S4Vectors simpleCache tidyr]; }; - CODEX = derive2 { name="CODEX"; version="1.32.0"; sha256="0xgsy5b959rdjc548jc8qh9wxnhvgigg07cnbb2l2mgrpxj7v3hr"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb IRanges Rsamtools S4Vectors]; }; - COHCAP = derive2 { name="COHCAP"; version="1.46.0"; sha256="1rs361c0mmk3ixa17s0xab1wqmss89yn4s4ipmk9mfjiip0vv8na"; depends=[BH COHCAPanno gplots RColorBrewer Rcpp RcppArmadillo WriteXLS]; }; - COMPASS = derive2 { name="COMPASS"; version="1.38.1"; sha256="0nn36rwhprxy5192prx12agzjmkyvgl6ds4lknic9lsw4hiiapph"; depends=[abind BiocStyle clue coda data_table dplyr foreach knitr magrittr pdist plyr RColorBrewer Rcpp reshape2 rlang rmarkdown scales tidyr]; }; - CONFESS = derive2 { name="CONFESS"; version="1.28.0"; sha256="0yzsm0nh9sx3ifb6jn2q266c4845pnwhlzy3fxs239ah0rpixbhy"; depends=[changepoint cluster contrast data_table EBImage ecp flexmix flowClust flowCore flowMeans flowMerge flowPeaks foreach ggplot2 limma MASS moments outliers plotrix raster readbitmap reshape2 SamSPECTRAL waveslim wavethresh zoo]; }; - CONSTANd = derive2 { name="CONSTANd"; version="1.8.0"; sha256="083pqvzxd3svy8g9qrv08221dr2rcwj9jknask2h227zi4id1lwi"; depends=[]; }; - CORREP = derive2 { name="CORREP"; version="1.66.0"; sha256="1gsjkn72npj78xs2j00ny5vcykfx9j6j41nckk2lnmsq2vynjj95"; depends=[e1071]; }; - COSNet = derive2 { name="COSNet"; version="1.34.0"; sha256="1qjayfvb4iy8jpyq547gs2x66p99j56v6zd443rjn0rrwqyrxw9m"; depends=[]; }; - COTAN = derive2 { name="COTAN"; version="2.0.5"; sha256="1blrziycc3xgglk1r2hqvz4qiqjvnyjzvjlvcjwvm3yij11wwl5q"; depends=[assertthat circlize ComplexHeatmap dendextend dplyr factoextra ggplot2 ggrepel ggthemes irlba Matrix parallelly plyr RColorBrewer Rfast rlang scales Seurat stringr tibble tidyr umap withr zeallot]; }; - CRISPRseek = derive2 { name="CRISPRseek"; version="1.40.0"; sha256="0gp96c3gip48yd2ffw6n9p30ib7yiz7p4h57i0kc4qv3lnj31dqi"; depends=[BiocGenerics Biostrings BSgenome data_table DelayedArray dplyr GenomeInfoDb GenomicRanges hash IRanges keras mltools reticulate rhdf5 S4Vectors seqinr XVector]; }; - CRImage = derive2 { name="CRImage"; version="1.48.0"; sha256="11ikg8mil9slnjxcl45b97i2yng8bh1fdcyf92bwhrwnamp0asfc"; depends=[aCGH DNAcopy e1071 EBImage foreach MASS sgeostat]; }; - CSAR = derive2 { name="CSAR"; version="1.52.0"; sha256="0p3r2x7gn4gmsdmymwi1spd4dpc8phgbg7zw8hwbif0s28vpz40m"; depends=[GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - CSSP = derive2 { name="CSSP"; version="1.37.0"; sha256="08l8ag82n9hdrj31m37f4fm9kvxjx7xyprdlbi20aqrzsrd227gr"; depends=[]; }; - CSSQ = derive2 { name="CSSQ"; version="1.12.1"; sha256="0xs2f4gzkdfwqj87f1v3w8hswmlrqlwvldhi0j9yp3js83cn8fc5"; depends=[GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; - CTDquerier = derive2 { name="CTDquerier"; version="2.8.0"; sha256="0lbm4863bjfyj0myw6qh7gdvjvv26prspahc7fyhnhnil679w1vg"; depends=[BiocFileCache ggplot2 gridExtra igraph RCurl S4Vectors stringdist stringr]; }; - CTSV = derive2 { name="CTSV"; version="1.2.0"; sha256="0qg3pw6wqylxl2158sn4s2wf0v4693ljlqmsqw0i88r3gm0y7s9r"; depends=[BiocParallel knitr pscl qvalue SpatialExperiment SummarizedExperiment]; }; - CTdata = derive2 { name="CTdata"; version="1.0.2"; sha256="1f1a2h21h9fbyzr34wb3906h68l5d248imzjsgapdm5nnibjrx96"; depends=[ExperimentHub]; }; - CancerSubtypes = derive2 { name="CancerSubtypes"; version="1.26.0"; sha256="06lw7b43fwh554870w71i676q6gm6kx53580cgg17a7prdjndkmr"; depends=[cluster ConsensusClusterPlus impute limma NMF sigclust survival]; }; - Cardinal = derive2 { name="Cardinal"; version="3.2.1"; sha256="02kr2bxikkxbiqnp6rf9n4pdsqv20fqnhki36jkfd31314z0hw95"; depends=[Biobase BiocGenerics BiocParallel EBImage irlba magrittr Matrix matter mclust nlme ProtGenerics S4Vectors signal sp viridisLite]; }; - Category = derive2 { name="Category"; version="2.66.0"; sha256="1wjf6xbnys7nv8z4xrzck1wk5xifkdni672kigs0aqdxqj8d80f5"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI genefilter graph GSEABase Matrix RBGL]; }; - CausalR = derive2 { name="CausalR"; version="1.32.0"; sha256="0qgsfjcz13v13hhril0habija952aj7j9x3xgpxk4ifwmpd8jrsj"; depends=[igraph]; }; - CeTF = derive2 { name="CeTF"; version="1.12.0"; sha256="1s5qvhy2ypqznap69ryih4q8hhvbb8yk1kk31z3bmrpy7waa1hqw"; depends=[circlize clusterProfiler ComplexHeatmap DESeq2 dplyr GenomicTools_fileHandler GGally ggnetwork ggplot2 ggpubr ggrepel igraph Matrix network Rcpp RcppArmadillo RCy3 S4Vectors SummarizedExperiment]; }; - CellBarcode = derive2 { name="CellBarcode"; version="1.6.0"; sha256="0sfp3ybgshk83vmr7jz4kvk1dkwpbi8vmzqsygl07ry0k4yrdlff"; depends=[BH Biostrings Ckmeans_1d_dp data_table egg ggplot2 magrittr plyr Rcpp S4Vectors seqinr ShortRead stringr zlibbioc]; }; - CellBench = derive2 { name="CellBench"; version="1.16.0"; sha256="14g8z1rjmrrxzq6b181806v9lzwax7xhzjqcis1izb1sm25vj86n"; depends=[assertthat BiocFileCache BiocGenerics BiocParallel dplyr glue lubridate magrittr memoise purrr rappdirs rlang SingleCellExperiment tibble tidyr tidyselect]; }; - CellMapper = derive2 { name="CellMapper"; version="1.26.0"; sha256="1cwfhln8hm08aia8262zis89n4n29165brhxgdg100fx7capfqrr"; depends=[S4Vectors]; }; - CellMixS = derive2 { name="CellMixS"; version="1.16.0"; sha256="175l5sdp5v1ncvjsw3r8g15qw15afmyczz499jxld1z8bqyjv9b6"; depends=[BiocGenerics BiocNeighbors BiocParallel cowplot dplyr ggplot2 ggridges kSamples magrittr purrr scater SingleCellExperiment SummarizedExperiment tidyr viridis]; }; - CellNOptR = derive2 { name="CellNOptR"; version="1.46.0"; sha256="0wsyrpj0kdkl4ckxb87y81zj5gsvsswcnp4g88z6gdf4lgq4mc5x"; depends=[ggplot2 graph igraph RBGL RCurl Rgraphviz rmarkdown stringi stringr XML]; }; - CellScore = derive2 { name="CellScore"; version="1.20.0"; sha256="11dlbck7fhnfhvg1fyzgh62vgf5bfn74qisarwxmk0cq08cmcmqr"; depends=[Biobase gplots lsa RColorBrewer squash]; }; - CellTrails = derive2 { name="CellTrails"; version="1.18.0"; sha256="1w14k63b4wfxwllrj0xzpf6ggvmnkxxhhz9mb3m7a4qd2dldgbgs"; depends=[Biobase BiocGenerics cba dendextend dtw EnvStats ggplot2 ggrepel igraph maptree mgcv reshape2 Rtsne SingleCellExperiment SummarizedExperiment]; }; - CellaRepertorium = derive2 { name="CellaRepertorium"; version="1.10.0"; sha256="1p683c340kah5z9v2hyjbwsa242vmqnlk3fxjf4pflz43llrg6c8"; depends=[BiocGenerics Biostrings dplyr forcats generics glue Matrix progress purrr Rcpp reshape2 rlang S4Vectors stringr tibble tidyr]; }; - CelliD = derive2 { name="CelliD"; version="1.8.1"; sha256="0vigvqjrlqbi5kviaj8qvyq3v8afgbc5pjrz7zmx2ckf4hdp0g03"; depends=[BiocParallel data_table fastmatch fgsea ggplot2 glue irlba Matrix matrixStats pbapply Rcpp RcppArmadillo reticulate Rtsne scater Seurat SingleCellExperiment stringr SummarizedExperiment tictoc umap]; }; - Cepo = derive2 { name="Cepo"; version="1.6.0"; sha256="1rllwj4zm9hkghjd7wh55a3znqk6h9nadcqxrmdf210325hm21ya"; depends=[BiocParallel DelayedArray DelayedMatrixStats dplyr ggplot2 GSEABase HDF5Array patchwork reshape2 rlang S4Vectors SingleCellExperiment SummarizedExperiment]; }; - CexoR = derive2 { name="CexoR"; version="1.38.0"; sha256="0gzdpjyg25cig4ylc6v5b7bwqj12a50ydfqfc8h0dism6f1i6acs"; depends=[genomation GenomeInfoDb GenomicRanges idr IRanges RColorBrewer Rsamtools rtracklayer S4Vectors]; }; - ChAMP = derive2 { name="ChAMP"; version="2.30.0"; sha256="1px2pm90lxwh0yn7h1kmmf94flhjs5p4i0iav7ya1xfybyg4w2zc"; depends=[bumphunter ChAMPdata combinat dendextend DMRcate DNAcopy doParallel DT GenomicRanges ggplot2 globaltest goseq Hmisc Illumina450ProbeVariants_db IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b4_hg19 IlluminaHumanMethylationEPICmanifest illuminaio impute isva kpmt limma marray matrixStats minfi missMethyl plotly plyr preprocessCore prettydoc quadprog qvalue RColorBrewer rmarkdown RPMM shiny shinythemes sva wateRmelon]; }; - ChIC = derive2 { name="ChIC"; version="1.19.0"; sha256="0zbmhixxn3skn8csz93fyyfamz1n3gzjzb2caw8ybi2cysgzz5ys"; depends=[BiocGenerics caret caTools ChIC_data genomeIntervals GenomicRanges IRanges progress randomForest Rsamtools S4Vectors]; }; - ChIPComp = derive2 { name="ChIPComp"; version="1.30.0"; sha256="1v27bqik5cgcvs1kb67s52r56v6fakvmi81iybvvvbxvcn1dmy9r"; depends=[BiocGenerics BSgenome_Hsapiens_UCSC_hg19 BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicRanges IRanges limma Rsamtools rtracklayer S4Vectors]; }; - ChIPQC = derive2 { name="ChIPQC"; version="1.36.1"; sha256="0jlh74gr4d9n7g91mcgg82yha9hvd5kqkqn8r36knbxs27drbxbc"; depends=[Biobase BiocGenerics BiocParallel chipseq DiffBind GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gtools IRanges Nozzle_R1 reshape2 Rsamtools S4Vectors TxDb_Celegans_UCSC_ce6_ensGene TxDb_Dmelanogaster_UCSC_dm3_ensGene TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene TxDb_Rnorvegicus_UCSC_rn4_ensGene]; }; - ChIPXpress = derive2 { name="ChIPXpress"; version="1.44.0"; sha256="08qzmjvz3v5ji9lzpxlhxgv3d0smmyvai49yphbbvz9vv57hgjkf"; depends=[affy biganalytics bigmemory Biobase ChIPXpressData frma GEOquery]; }; - ChIPanalyser = derive2 { name="ChIPanalyser"; version="1.22.0"; sha256="1r8d5bvmmgcxw8kxzdgymwnyg0lspjv9sfjd6pfrhjn88sjz22xv"; depends=[BiocManager Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges RColorBrewer RcppRoll ROCR rtracklayer S4Vectors]; }; - ChIPexoQual = derive2 { name="ChIPexoQual"; version="1.24.0"; sha256="1iysqs2k0xxiwd48ymahf6rywwj9ingjcfmnhx9d1x6w2h00v7lz"; depends=[BiocParallel biovizBase broom data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 hexbin IRanges RColorBrewer rmarkdown Rsamtools S4Vectors scales viridis]; }; - ChIPpeakAnno = derive2 { name="ChIPpeakAnno"; version="3.34.1"; sha256="0y9qskkdkl2vdbn66md4xisny0i7g2biasylp357vrkv41d3al6l"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings DBI dplyr ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 graph InteractionSet IRanges KEGGREST matrixStats multtest RBGL regioneR Rsamtools rtracklayer S4Vectors SummarizedExperiment VennDiagram]; }; - ChIPseeker = derive2 { name="ChIPseeker"; version="1.36.0"; sha256="0nngygci1g8bb3rsica348zi59hskr6hf8319csia6cman89gvqm"; depends=[AnnotationDbi aplot BiocGenerics boot dplyr enrichplot GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gplots gtools IRanges magrittr plotrix rtracklayer S4Vectors tibble TxDb_Hsapiens_UCSC_hg19_knownGene yulab_utils]; }; - ChIPseqR = derive2 { name="ChIPseqR"; version="1.54.0"; sha256="1319vkb618vv4vqs8lzg71wrzsfcwx7al272h4dy5x10j3ag7z4n"; depends=[BiocGenerics Biostrings fBasics GenomicRanges HilbertVis IRanges S4Vectors ShortRead timsac]; }; - ChIPsim = derive2 { name="ChIPsim"; version="1.54.0"; sha256="153ns4n7idannm80jdxlbjvbzazajc4m22w69m2s9x3k05g1265p"; depends=[Biostrings IRanges ShortRead XVector]; }; - ChemmineOB = derive2 { name="ChemmineOB"; version="1.38.0"; sha256="0l44d6l078k1w5nf7i4sarah1zn30zqjmcj9qpy4hhg97dfy45ci"; depends=[BH BiocGenerics Rcpp zlibbioc]; }; - ChemmineR = derive2 { name="ChemmineR"; version="3.52.0"; sha256="1m4vgq3z0kya7kbncawr9csvbwnh74mh012w7g2ialwd3nwdf91x"; depends=[base64enc BH BiocGenerics DBI digest DT ggplot2 gridExtra jsonlite png Rcpp RCurl rjson rsvg stringi]; }; - Chicago = derive2 { name="Chicago"; version="1.28.0"; sha256="04h4a5nyc78jlsg9pj8ay559bwb8y1nm80v9zvyxd7r490yn7k7s"; depends=[data_table Delaporte Hmisc MASS matrixStats]; }; - ChromHeatMap = derive2 { name="ChromHeatMap"; version="1.54.0"; sha256="0ry4dcgs924kmzl2wccdmbiihvghcpfv9wmlp8jngnjwx7gkixi3"; depends=[annotate AnnotationDbi Biobase BiocGenerics GenomicRanges IRanges rtracklayer]; }; - ChromSCape = derive2 { name="ChromSCape"; version="1.10.0"; sha256="1v5gym0zsbi0jwpgdr442z97zw295f0h335jndzbi23n4nfj6lxv"; depends=[batchelor BiocParallel colorRamps colourpicker ConsensusClusterPlus coop DelayedArray dplyr DT edgeR forcats fs GenomicRanges gggenes ggplot2 ggrepel gridExtra IRanges irlba jsonlite kableExtra Matrix matrixTests msigdbr plotly qs qualV Rcpp rlist Rsamtools rtracklayer Rtsne S4Vectors scater scran shiny shinycssloaders shinydashboard shinydashboardPlus shinyFiles shinyhelper shinyjs shinyWidgets SingleCellExperiment stringdist stringr SummarizedExperiment tibble tidyr umap viridis]; }; - CircSeqAlignTk = derive2 { name="CircSeqAlignTk"; version="1.2.0"; sha256="199ynhjl4hmgxwgzpg2wp4k5jrw737c7v40yjg7ds17j62hs4ari"; depends=[BiocGenerics Biostrings dplyr ggplot2 IRanges magrittr Rbowtie2 Rhisat2 rlang Rsamtools S4Vectors ShortRead tidyr]; }; - CiteFuse = derive2 { name="CiteFuse"; version="1.12.0"; sha256="1cvg7gnnjxgickqd3hm90dv5zi1vr3xv0l51qll7gfksck75d8fr"; depends=[compositions cowplot dbscan ggplot2 ggraph ggridges gridExtra igraph Matrix mixtools pheatmap randomForest Rcpp reshape2 rhdf5 rlang Rtsne S4Vectors scales scran SingleCellExperiment SummarizedExperiment uwot]; }; - ClassifyR = derive2 { name="ClassifyR"; version="3.4.11"; sha256="10mcc62v4fzm8gavs874dmkhnqz8vdl52di3z2qjg76jv6jj7z9q"; depends=[BiocParallel dplyr genefilter generics ggplot2 ggpubr MultiAssayExperiment ranger reshape2 rlang S4Vectors survival tidyr]; }; - Clomial = derive2 { name="Clomial"; version="1.36.0"; sha256="1y4jjq9vxgi6m5g94j0j4xvcbpba7pv6y284ig3m4m83pq9xbq5d"; depends=[matrixStats permute]; }; - Clonality = derive2 { name="Clonality"; version="1.47.0"; sha256="0yxwwc0sl3impvzr0bmjmdn65z6qx6lf5pwik2p8wxxgaybvff9r"; depends=[DNAcopy]; }; - CluMSID = derive2 { name="CluMSID"; version="1.16.0"; sha256="1p210mc7akhsxbq8daqk9lqxnmlykmjgrsyliiq3n7qm6z4md2pl"; depends=[ape Biobase dbscan GGally ggplot2 gplots MSnbase mzR network plotly RColorBrewer S4Vectors sna]; }; - ClusterJudge = derive2 { name="ClusterJudge"; version="1.22.0"; sha256="0xikw8zycgslch2nlvmksjxfzl8bnal0p7dnijgm48kgs1h78ikl"; depends=[httr infotheo jsonlite lattice latticeExtra]; }; - ClusterSignificance = derive2 { name="ClusterSignificance"; version="1.28.0"; sha256="0hpkrf71blj2hc7yr7grrpffwyyhpzqm5i2mc2fyii8f7hbv77fv"; depends=[pracma princurve RColorBrewer scatterplot3d]; }; - CoCiteStats = derive2 { name="CoCiteStats"; version="1.72.0"; sha256="0xw1vcbv353k610c2zizgfqb5xxrfc7ls55jlaz2qhy8a0592wxz"; depends=[AnnotationDbi org_Hs_eg_db]; }; - CoGAPS = derive2 { name="CoGAPS"; version="3.20.0"; sha256="1vkc4y6hsnd5ip5ngdwcm39ws85f1pz0wjg6h8n37pnq1awbpn78"; depends=[BH BiocParallel biomaRt cluster dplyr fgsea forcats ggplot2 gplots msigdbr RColorBrewer Rcpp rhdf5 S4Vectors SingleCellExperiment SummarizedExperiment]; }; - CoRegNet = derive2 { name="CoRegNet"; version="1.38.0"; sha256="19df43l35dkf36dhq8fx8a9gm1grxymrmpcix0b4qmxrzwjp0s8k"; depends=[arules igraph shiny]; }; - CoSIA = derive2 { name="CoSIA"; version="1.0.0"; sha256="1hq2q5m4jl0fb13zai9y1mjv7pgpvh1fnjrlx533lgcnzavm4d1h"; depends=[AnnotationDbi annotationTools biomaRt dplyr ExperimentHub ggplot2 homologene magrittr org_Ce_eg_db org_Dm_eg_db org_Dr_eg_db org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db plotly RColorBrewer readr stringr tibble tidyr tidyselect]; }; - Cogito = derive2 { name="Cogito"; version="1.6.0"; sha256="1xcjkkcc4xdpmdgjgmx867ldjhlghx1w3bmyqfzfdw8s8whz3lvl"; depends=[AnnotationDbi BiocManager entropy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 jsonlite magrittr rmarkdown S4Vectors TxDb_Mmusculus_UCSC_mm9_knownGene]; }; - ComPrAn = derive2 { name="ComPrAn"; version="1.8.0"; sha256="1y9qfkjyiaz7sy16xwijsnr6im5rgqrlyiqk7h74l609bwaq1say"; depends=[data_table dplyr DT forcats ggplot2 magrittr purrr RColorBrewer rio rlang scales shiny shinydashboard shinyjs stringr tibble tidyr VennDiagram]; }; - ComplexHeatmap = derive2 { name="ComplexHeatmap"; version="2.16.0"; sha256="08jpbw7qns736zq1fwk9lyr4qm7rgzzw3hksv59zwb1458a79pzy"; depends=[circlize clue codetools colorspace digest doParallel foreach GetoptLong GlobalOptions IRanges matrixStats png RColorBrewer]; }; - CompoundDb = derive2 { name="CompoundDb"; version="1.4.0"; sha256="12nb5h1n016kr6riby32mq1642dr1zvwzyimmwhsa4w07l1yk0zj"; depends=[AnnotationFilter Biobase BiocGenerics BiocParallel ChemmineR DBI dbplyr dplyr IRanges jsonlite MetaboCoreUtils MsCoreUtils ProtGenerics RSQLite S4Vectors Spectra tibble xml2]; }; - ConsensusClusterPlus = derive2 { name="ConsensusClusterPlus"; version="1.64.0"; sha256="0ig6xfhd70my5j4xrdy8srg1wi8nb3kcxlrld9py47psrq9vdadm"; depends=[ALL Biobase cluster]; }; - CopyNumberPlots = derive2 { name="CopyNumberPlots"; version="1.16.0"; sha256="02kf3gn8p3rginin17i4ks9mmi3dq4w3g9bil4s3wjfw5bd2mj2m"; depends=[cn_mops GenomeInfoDb GenomicRanges IRanges karyoploteR regioneR rhdf5 Rsamtools SummarizedExperiment VariantAnnotation]; }; - CoreGx = derive2 { name="CoreGx"; version="2.4.0"; sha256="09pv117g8sxhrij960mparrz1r9vx8s20gmpvn1h667kl1bc0jm9"; depends=[bench Biobase BiocGenerics BiocParallel BumpyMatrix checkmate crayon data_table glue lsa MatrixGenerics MultiAssayExperiment piano rlang S4Vectors SummarizedExperiment]; }; - Cormotif = derive2 { name="Cormotif"; version="1.46.0"; sha256="0x4h5g5nmab8aw7zs6plms6ric6hd1n034gnxrx5lskb1hc2j69l"; depends=[affy limma]; }; - CoverageView = derive2 { name="CoverageView"; version="1.38.0"; sha256="1ci07y75nvvv1mxy23v6jp5xb6n023fvlqh9il5lsdqwyfl5nz9s"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; - CrispRVariants = derive2 { name="CrispRVariants"; version="1.28.0"; sha256="0vxywynq5d6vmcswgzbqfzdix1h8q1sv0f4gfyxhg1smx6yq8rzc"; depends=[AnnotationDbi BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges reshape2 Rsamtools S4Vectors]; }; - CyTOFpower = derive2 { name="CyTOFpower"; version="1.6.0"; sha256="1b5010ryy26k6q2c83qrygwklbwmirffmsc3flrbp2izknwpfwfk"; depends=[CytoGLMM diffcyt dplyr DT ggplot2 magrittr rlang shiny shinyFeedback shinyjs shinyMatrix SummarizedExperiment tibble tidyr]; }; - CytoDx = derive2 { name="CytoDx"; version="1.20.0"; sha256="1yqplz0z8bfnkns9zwnprwfr6xzw2pmnrw0y8avm1wahw3sry4ws"; depends=[doParallel dplyr flowCore glmnet rpart rpart_plot]; }; - CytoGLMM = derive2 { name="CytoGLMM"; version="1.8.0"; sha256="0nw4x45d77ay75yghkyx1gx15vr5yc3zsbb00j1hcj8m3frz5r1f"; depends=[BiocParallel caret cowplot doParallel dplyr factoextra flexmix ggplot2 ggrepel logging magrittr MASS Matrix mbest pheatmap RColorBrewer rlang stringr strucchange tibble tidyr]; }; - CytoML = derive2 { name="CytoML"; version="2.12.0"; sha256="19rlg15nk2205vma4whpqmvlazww5i3ibxhmk9cljsaj4ql560vf"; depends=[BH Biobase cpp11 cytolib data_table dplyr flowCore flowWorkspace ggcyto graph jsonlite openCyto RBGL Rgraphviz Rhdf5lib RProtoBufLib tibble XML yaml]; }; - CytoPipeline = derive2 { name="CytoPipeline"; version="1.0.2"; sha256="0xp1fqs87q9k52g3c2181nn7jfrzmahhafzsaw4saaynsdh7hnhl"; depends=[BiocFileCache BiocParallel diagram flowAI flowCore ggcyto ggplot2 jsonlite PeacoQC rlang scales withr]; }; - DAMEfinder = derive2 { name="DAMEfinder"; version="1.12.0"; sha256="0m8g1sp55mxa0qswpqkzk73myhhy3s49c21hf97sk0lxis5lagcd"; depends=[BiocGenerics Biostrings bumphunter cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges limma plyr readr reshape2 Rsamtools S4Vectors stringr SummarizedExperiment VariantAnnotation]; }; - DAPAR = derive2 { name="DAPAR"; version="1.32.5"; sha256="0jjllbp9szlvbrfc74lvw8i9q7zibxinvvnmf3xgv654xkv218pv"; depends=[Biobase DAPARdata foreach highcharter MSnbase]; }; - DART = derive2 { name="DART"; version="1.48.0"; sha256="0rkabvjkh5iimpxspyizpffz69q7pvj1jq3f9704a2p51q60j74n"; depends=[igraph]; }; - DECIPHER = derive2 { name="DECIPHER"; version="2.28.0"; sha256="16z6yk8rr2115z6g1l7fl01binxm29vnxsnsm2wzfvc5vv49927n"; depends=[Biostrings DBI IRanges RSQLite S4Vectors XVector]; }; - DEFormats = derive2 { name="DEFormats"; version="1.28.0"; sha256="1dqiy0q1w3n9r03bxhx2vnk1z5a476rpkzcwl3cn9ghqns2wvmlz"; depends=[checkmate data_table DESeq2 edgeR GenomicRanges S4Vectors SummarizedExperiment]; }; - DEGraph = derive2 { name="DEGraph"; version="1.52.0"; sha256="1khlnsq7j9nikzn3x8x99j3m6c2iv5wx8i5qnxbp5cqp82aa1bpb"; depends=[graph KEGGgraph lattice mvtnorm NCIgraph R_methodsS3 R_utils RBGL Rgraphviz rrcov]; }; - DEGreport = derive2 { name="DEGreport"; version="1.36.0"; sha256="15xm1l2qgsyzaw820a1fq5qdzh5pj4dmr1hx6s6b6wm2p02cvvai"; depends=[Biobase BiocGenerics broom circlize cluster ComplexHeatmap ConsensusClusterPlus cowplot DESeq2 dplyr edgeR ggdendro ggplot2 ggrepel knitr logging magrittr psych RColorBrewer reshape rlang S4Vectors scales stringr SummarizedExperiment tibble tidyr]; }; - DEGseq = derive2 { name="DEGseq"; version="1.54.0"; sha256="1lcjbwr3m6wr084gqm7sza04j4811vgpiszr7cc4zr06ab4sasq3"; depends=[qvalue]; }; - DELocal = derive2 { name="DELocal"; version="1.0.0"; sha256="158krqf3lxss4ha0v446cvf8kziv3rligg1bl5zp461gh6wwxqc5"; depends=[DESeq2 dplyr ggplot2 limma matrixStats reshape2 SummarizedExperiment]; }; - DEP = derive2 { name="DEP"; version="1.22.0"; sha256="1sann6zj3gsg15p5z80l65sjdh5gnlp5n95kix43vwprp5y25qn5"; depends=[assertthat circlize cluster ComplexHeatmap dplyr DT fdrtool ggplot2 ggrepel gridExtra imputeLCMD limma MSnbase purrr RColorBrewer readr rmarkdown shiny shinydashboard SummarizedExperiment tibble tidyr vsn]; }; - DEScan2 = derive2 { name="DEScan2"; version="1.20.1"; sha256="1n4gww1ncxp03rq76fnzzarxszzwdq3fizcf97pr1qcx0cwkqzlv"; depends=[BiocGenerics BiocParallel ChIPpeakAnno data_table DelayedArray GenomeInfoDb GenomicAlignments GenomicRanges glue IRanges plyr Rcpp RcppArmadillo rtracklayer S4Vectors SummarizedExperiment]; }; - DESeq2 = derive2 { name="DESeq2"; version="1.40.2"; sha256="0rb6b2aqn3an5ria4yjasjr7aldr5606rkc4yw275x9ddii22djg"; depends=[Biobase BiocGenerics BiocParallel GenomicRanges ggplot2 IRanges locfit matrixStats Rcpp RcppArmadillo S4Vectors SummarizedExperiment]; }; - DESpace = derive2 { name="DESpace"; version="1.0.0"; sha256="1xrfk4v1rs0lnzdm28b76hp2zdgddhcmiixm2qjmvmif2ak4lvr9"; depends=[assertthat BiocGenerics BiocParallel cowplot data_table dplyr edgeR ggforce ggnewscale ggplot2 ggpubr limma Matrix patchwork S4Vectors scales SpatialExperiment SummarizedExperiment]; }; - DEWSeq = derive2 { name="DEWSeq"; version="1.14.0"; sha256="1bhqzmqrpv76p0qc18shmqvpdfyn1calswwdycizj729v5080l3s"; depends=[BiocGenerics BiocParallel data_table DESeq2 GenomeInfoDb GenomicRanges R_utils S4Vectors SummarizedExperiment]; }; - DEXSeq = derive2 { name="DEXSeq"; version="1.46.0"; sha256="0z4i3lsaziq3hprk64akx7jl6b757kmd8k6gv5pn36pavc6x1a0g"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel biomaRt DESeq2 genefilter geneplotter GenomicRanges hwriter IRanges RColorBrewer Rsamtools S4Vectors statmod stringr SummarizedExperiment]; }; - DEqMS = derive2 { name="DEqMS"; version="1.18.0"; sha256="0hgra7dvrfqniwz8srnqsx6mhd6pjx4bn9dfy0fyp4sldj8d1d83"; depends=[ggplot2 limma matrixStats]; }; - DEsingle = derive2 { name="DEsingle"; version="1.20.0"; sha256="145kpcp3v4wg7fjq4m1a15ikvwdpqc753217rjpr5p5306j489ra"; depends=[bbmle BiocParallel gamlss MASS Matrix maxLik pscl VGAM]; }; - DEsubs = derive2 { name="DEsubs"; version="1.26.0"; sha256="1mzq5lld6hh1pg6j3z88h3rydr984qb5kh92bzxqqlj8j1lhlmif"; depends=[circlize DESeq2 EBSeq edgeR ggplot2 graph igraph jsonlite limma locfit Matrix NBPSeq pheatmap RBGL]; }; - DExMA = derive2 { name="DExMA"; version="1.8.1"; sha256="1c5ha2afscqh8yr1hpsl98x291g8awg0jnkb97yv2cmwwg8dbipg"; depends=[Biobase bnstruct DExMAdata GEOquery impute limma pheatmap plyr RColorBrewer scales snpStats sva swamp]; }; - DFP = derive2 { name="DFP"; version="1.58.0"; sha256="1z4d7q5aqb3a5ma438v2y7ikjnlrfncm02adaj5krxlyqcsjksci"; depends=[Biobase]; }; - DIAlignR = derive2 { name="DIAlignR"; version="2.8.0"; sha256="1fms2yrwhgv1qhdq30zzbgqli9ir99iqmi41hgr624x6jrbpy8fy"; depends=[ape bit64 data_table DBI dplyr ggplot2 magrittr mzR phangorn pracma Rcpp RcppEigen reticulate rlang RMSNumpress RSQLite signal tidyr zoo]; }; - DMCFB = derive2 { name="DMCFB"; version="1.14.0"; sha256="1frp3czy4zry1ml2r93aw2h8arr5bfxlszimcnmqpbca0gxd6lx3"; depends=[arm benchmarkme BiocParallel data_table fastDummies GenomicRanges IRanges MASS matrixStats rtracklayer S4Vectors speedglm SummarizedExperiment tibble]; }; - DMCHMM = derive2 { name="DMCHMM"; version="1.22.0"; sha256="018m7zz2xjgn0k6ld049dr877m77cax8pyr1r1pji6mxi0mzkwsw"; depends=[BiocParallel calibrate fdrtool GenomicRanges IRanges multcomp rtracklayer S4Vectors SummarizedExperiment]; }; - DMRScan = derive2 { name="DMRScan"; version="1.22.0"; sha256="0np16zkbgpxvr92ha55kr4jg11d144wgqrk8x1sc0w3pffllk8x6"; depends=[GenomeInfoDb GenomicRanges IRanges MASS Matrix mvtnorm RcppRoll]; }; - DMRcaller = derive2 { name="DMRcaller"; version="1.32.0"; sha256="004n56d49a8bviblany5z9fip7dy5g4zxjz2j50lryhbs256n67y"; depends=[betareg GenomicRanges IRanges Rcpp RcppRoll S4Vectors]; }; - DMRcate = derive2 { name="DMRcate"; version="2.14.1"; sha256="1va60r297cl6xw5mc4nf9igfizqqzz7i5436x26iw4q35jcwlfjl"; depends=[biomaRt bsseq DSS edgeR ExperimentHub GenomeInfoDb GenomicRanges Gviz IRanges limma minfi missMethyl plyr S4Vectors SummarizedExperiment]; }; - DMRforPairs = derive2 { name="DMRforPairs"; version="1.35.0"; sha256="1fdj2kk4hy1cy7lvxdcdigzvjsggsrchff10mccwwpycc4h115dj"; depends=[GenomicRanges Gviz R2HTML]; }; - DNABarcodeCompatibility = derive2 { name="DNABarcodeCompatibility"; version="1.16.0"; sha256="0wwm59dw1fjw34ixwjzf6lvjn3rplqx9bawjfy5v1b12s8szyjii"; depends=[DNABarcodes dplyr numbers purrr stringr tidyr]; }; - DNABarcodes = derive2 { name="DNABarcodes"; version="1.30.0"; sha256="1jys0lj92zkqa3bb22fg35q5y8ij5pqhy3yvzg8zc8bjpzdvrg3a"; depends=[BH Matrix Rcpp]; }; - DNAcopy = derive2 { name="DNAcopy"; version="1.74.1"; sha256="1bj87ksvch5cm5zxwgfiiql0j94pvzbpn59wp6bacyip65z7w3ax"; depends=[]; }; - DNAfusion = derive2 { name="DNAfusion"; version="1.2.0"; sha256="1wakfplnc513r31pqbpdvmdc0qqbrh5naizb764jj3nqvs1h3wfj"; depends=[bamsignals BiocBaseUtils BiocGenerics GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools S4Vectors TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - DNAshapeR = derive2 { name="DNAshapeR"; version="1.28.0"; sha256="03sfa8cyfrvww1nihv1dg7d5c5qkf6j2w9d0v5zfww2dp93i504k"; depends=[Biostrings fields GenomicRanges Rcpp]; }; - DOSE = derive2 { name="DOSE"; version="3.26.2"; sha256="07hhvyv1yiblpx8yvnx919jhafl89s56lfkjiyihv4yzqn16ln3d"; depends=[AnnotationDbi BiocParallel fgsea ggplot2 GOSemSim HDO_db qvalue reshape2]; }; - DRIMSeq = derive2 { name="DRIMSeq"; version="1.28.0"; sha256="1i9lcp31g94mllkwcyfablj27qr8v7vqk9j96ywrdfpj8dmcrw98"; depends=[BiocGenerics BiocParallel edgeR GenomicRanges ggplot2 IRanges limma MASS reshape2 S4Vectors]; }; - DSS = derive2 { name="DSS"; version="2.48.0"; sha256="1aslbzwqfp609ym98k6cjjf6r1ns9hxcpx4igfjhqf2v0pazz2q8"; depends=[Biobase BiocParallel bsseq]; }; - DTA = derive2 { name="DTA"; version="2.46.0"; sha256="1hi0i76sr0naq06py8bx3cm5wb4v3haz9wa2rnznpzw67svhxci9"; depends=[LSD scatterplot3d]; }; - DaMiRseq = derive2 { name="DaMiRseq"; version="2.12.0"; sha256="1s0zh62rvrhrb9rm5zc4g1w5a638yjzb9mma6dnxhgz4j3ayx8zl"; depends=[arm caret corrplot DESeq2 e1071 EDASeq edgeR FactoMineR FSelector ggplot2 Hmisc ineq kknn limma lubridate MASS pheatmap pls plsVarSel plyr randomForest RColorBrewer reshape2 RSNNS SummarizedExperiment sva]; }; - DeMAND = derive2 { name="DeMAND"; version="1.30.0"; sha256="1isnabzk81f4h5r6ax5n9iqyckwym9qpgvi8xdlb2zpgkmz09ahg"; depends=[KernSmooth]; }; - DeMixT = derive2 { name="DeMixT"; version="1.16.0"; sha256="0671pb9400lcg530gja47c2dm8fdw5sk2prkjc8ji8aypiryjfpa"; depends=[base64enc dendextend DSS ggplot2 KernSmooth knitr matrixcalc matrixStats psych Rcpp rmarkdown SummarizedExperiment sva truncdist]; }; - DeconRNASeq = derive2 { name="DeconRNASeq"; version="1.42.0"; sha256="0bmkyci31p7g097i8fvc0s1fz47hv6vp5rcfqqkvclm86wfkkmkc"; depends=[ggplot2 limSolve pcaMethods]; }; - DeepBlueR = derive2 { name="DeepBlueR"; version="1.26.0"; sha256="0xh106a8000v80fwjzjpapgkli47fz1m4kpicp1yxskh3yki5gq1"; depends=[data_table diffr dplyr filehash foreach GenomeInfoDb GenomicRanges R_utils RCurl rjson rtracklayer settings stringr withr XML]; }; - DeepPINCS = derive2 { name="DeepPINCS"; version="1.8.3"; sha256="05kvnmglr7s8vw2j2ic2bmkmdxvddkjiwm8zwy133azzqbmbx2dg"; depends=[CatEncoders keras matlab PRROC purrr rcdk reticulate stringdist tensorflow tokenizers ttgsea webchem]; }; - DegNorm = derive2 { name="DegNorm"; version="1.10.1"; sha256="01jg6wgz0117kvjjmsnv8whizyd3iayfsvhgd615hjzz0fm82szp"; depends=[data_table doParallel foreach GenomicAlignments GenomicFeatures GenomicRanges ggplot2 heatmaply IRanges plotly plyr Rcpp RcppArmadillo Rsamtools S4Vectors viridis]; }; - DelayedArray = derive2 { name="DelayedArray"; version="0.26.7"; sha256="1xsq85nm1gk537mw6ppsyykpw70kczv6wn1nll63b0k8xs4wj0ha"; depends=[BiocGenerics IRanges Matrix MatrixGenerics S4Arrays S4Vectors]; }; - DelayedDataFrame = derive2 { name="DelayedDataFrame"; version="1.16.0"; sha256="00668ijn1jd6j503z0ayy0i7i81qazga0bvsa2qlfbbyqyasbmhk"; depends=[BiocGenerics DelayedArray S4Vectors]; }; - DelayedMatrixStats = derive2 { name="DelayedMatrixStats"; version="1.22.6"; sha256="0jaaqa2fm61dmsphm5y4rlwf2dm1l5rs0vpq0f5r35iyw2m12lh8"; depends=[DelayedArray IRanges Matrix MatrixGenerics matrixStats S4Vectors sparseMatrixStats]; }; - DelayedRandomArray = derive2 { name="DelayedRandomArray"; version="1.8.0"; sha256="0dly19l7739icsww053ds6lqg26x2z6lmyaf1hsqgpy3lczfr2hv"; depends=[BH DelayedArray dqrng Rcpp]; }; - DelayedTensor = derive2 { name="DelayedTensor"; version="1.6.0"; sha256="18qk3wi15ixjdfkfviy8qaqqs4cvr8dk25bjnr8sq4gnx73iy34p"; depends=[BiocSingular DelayedArray DelayedRandomArray einsum HDF5Array irlba Matrix rTensor]; }; - DepInfeR = derive2 { name="DepInfeR"; version="1.4.0"; sha256="1xw8y5bnki8p8khp4161kfrl5jicv4acf6vds0lfvzblgkh676jr"; depends=[BiocParallel glmnet matrixStats]; }; - DepecheR = derive2 { name="DepecheR"; version="1.16.0"; sha256="1kn1w1fs19gjvg8nhbvj6hyp32h6k81dnal4ab12xl1jgaa3xj5p"; depends=[beanplot doSNOW dplyr FNN foreach ggplot2 gmodels gplots MASS matrixStats mixOmics moments Rcpp RcppEigen reshape2 robustbase viridis]; }; - DiffBind = derive2 { name="DiffBind"; version="3.10.1"; sha256="12frl2wfvfz4gpq4fjsmglqyqfxdk3zjbhqkc78rzylbw37xx3bf"; depends=[amap apeglm ashr BiocParallel DESeq2 dplyr GenomicAlignments GenomicRanges ggplot2 ggrepel gplots GreyListChIP IRanges lattice limma locfit RColorBrewer Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment systemPipeR]; }; - DiffLogo = derive2 { name="DiffLogo"; version="2.24.0"; sha256="0wj9k3nnm5y1j5989i2gngxnhsygm9z5mbm532m174hap0fddpy9"; depends=[cba]; }; - DifferentialRegulation = derive2 { name="DifferentialRegulation"; version="1.4.2"; sha256="0dgi4jpianzsqrmkc0mj6cbn4y196mr9fk9h3m10xvgmyvw9gbly"; depends=[BANDITS data_table doParallel doRNG foreach ggplot2 MASS Matrix Rcpp RcppArmadillo SingleCellExperiment SummarizedExperiment tximport]; }; - Dino = derive2 { name="Dino"; version="1.6.0"; sha256="12zsj95nd9xvn62bfw45a42bqdqkxhzs4p8r4pww7dslh75hjpzv"; depends=[BiocParallel BiocSingular Matrix matrixStats S4Vectors scran Seurat SingleCellExperiment SummarizedExperiment]; }; - Director = derive2 { name="Director"; version="1.26.0"; sha256="051qx14pby9qnxy9zm5qwsi5mix2lbi1v19px3ybb4q1hykfhaxi"; depends=[htmltools]; }; - DirichletMultinomial = derive2 { name="DirichletMultinomial"; version="1.42.0"; sha256="1vslg6hp498ar4l1b8rdxscz5wj1xci866j8975wr378lnymb942"; depends=[BiocGenerics IRanges S4Vectors]; }; - DiscoRhythm = derive2 { name="DiscoRhythm"; version="1.16.0"; sha256="0fvp6qxqy181i3bjvq4494lr3iafa98n7mq4wiyqnkqkpxnjz53z"; depends=[BiocGenerics BiocStyle broom data_table dplyr DT ggExtra ggplot2 gridExtra heatmaply kableExtra knitr magick matrixStats matrixTests MetaCycle plotly reshape2 rmarkdown S4Vectors shiny shinyBS shinycssloaders shinydashboard shinyjs SummarizedExperiment UpSetR VennDiagram viridis zip]; }; - DominoEffect = derive2 { name="DominoEffect"; version="1.20.1"; sha256="0fi1abpjw3xrzxxd66ja7b5bki8byfmdlg91jpqvhnfi7wfv8zvy"; depends=[AnnotationDbi biomaRt Biostrings data_table GenomeInfoDb GenomicRanges IRanges SummarizedExperiment VariantAnnotation]; }; - Doscheda = derive2 { name="Doscheda"; version="1.22.0"; sha256="03xk9fx21nisjk65zc0wn1dp33z2rihn2vx9wbn4zgfdxjay9dj9"; depends=[affy calibrate corrgram drc DT ggplot2 gridExtra httr jsonlite limma matrixStats prodlim readxl reshape2 shiny shinydashboard stringr vsn]; }; - DriverNet = derive2 { name="DriverNet"; version="1.40.0"; sha256="0vzfi6wlijqh29v3dvd07hzp17yck31dnhlprzgn4cykf6yknamw"; depends=[]; }; - DropletUtils = derive2 { name="DropletUtils"; version="1.20.0"; sha256="09xwfb4ihpsp465vb1zbcwm6ww6qi3spn9d8p4i1gczyc0p9pf1y"; depends=[beachmat BH BiocGenerics BiocParallel DelayedArray DelayedMatrixStats dqrng edgeR GenomicRanges HDF5Array IRanges Matrix R_utils Rcpp rhdf5 Rhdf5lib S4Vectors scuttle SingleCellExperiment SummarizedExperiment]; }; - DrugVsDisease = derive2 { name="DrugVsDisease"; version="2.42.0"; sha256="0k3s9jryzc97jcm2gbz8d2qvn54dsf7mlf7qvx3nriqn3b99hyr7"; depends=[affy annotate ArrayExpress BiocGenerics biomaRt cMap2data DrugVsDiseasedata GEOquery hgu133a_db hgu133a2_db hgu133plus2_db limma qvalue RUnit xtable]; }; - Dune = derive2 { name="Dune"; version="1.12.0"; sha256="07nsb41v3d5xh4imn1y5bmck8f630nvs94pgmm3izxd0bkcqclfy"; depends=[aricode BiocParallel dplyr gganimate ggplot2 magrittr purrr RColorBrewer SummarizedExperiment tidyr]; }; - DynDoc = derive2 { name="DynDoc"; version="1.78.0"; sha256="16cb4pby6ja0xy8ygbgr6zfbyp4agyhlds5sayc5ryq50vafykah"; depends=[]; }; - EBImage = derive2 { name="EBImage"; version="4.42.0"; sha256="0z0ajmy1zx7mqcjm2ibyk2qg3cj00kl76padyksbdbmwdncxs8yb"; depends=[abind BiocGenerics fftwtools htmltools htmlwidgets jpeg locfit png RCurl tiff]; }; - EBSEA = derive2 { name="EBSEA"; version="1.28.0"; sha256="1ydzihgrchssadld3zswgbhh75clc9g1zx9mzv6g6kfnv8yrfr75"; depends=[DESeq2 EmpiricalBrownsMethod]; }; - EBSeq = derive2 { name="EBSeq"; version="1.40.0"; sha256="0y23k607f61csj2ciaqnl8pzsjisqlcnnhlasv36446n8f3silx5"; depends=[blockmodeling gplots testthat]; }; - EBSeqHMM = derive2 { name="EBSeqHMM"; version="1.34.0"; sha256="01rbpl44xr7ij68aq0jv6ygq7ilrnpqibwdp1fl6dpxsm1yxgzfb"; depends=[EBSeq]; }; - EBarrays = derive2 { name="EBarrays"; version="2.64.0"; sha256="1k50br4hpkrwv1lnn0wp1c7kj32vk0gg19aivmw5d6brjdd39c1f"; depends=[Biobase cluster lattice]; }; - EBcoexpress = derive2 { name="EBcoexpress"; version="1.44.0"; sha256="0407xr0rs7f5y6j10pbl9iwryaz128w1b41v8lg2a17m81wyf05q"; depends=[EBarrays mclust minqa]; }; - EDASeq = derive2 { name="EDASeq"; version="2.34.0"; sha256="0gf4k02b5qywrg5rpg6hs9gyzcdlpw36ndgz3ca19plicair4mih"; depends=[AnnotationDbi aroma_light Biobase BiocGenerics BiocManager biomaRt Biostrings GenomicFeatures GenomicRanges IRanges Rsamtools ShortRead]; }; - EDIRquery = derive2 { name="EDIRquery"; version="1.0.0"; sha256="1a50nm2315jrl0cjylivjg4q31qjfcmn3qyfs70b6xvbpcv2zf1b"; depends=[GenomicRanges InteractionSet readr tibble tictoc]; }; - EGAD = derive2 { name="EGAD"; version="1.28.0"; sha256="1q4dy9i3xgjg391bs9jhwdd4li91cz3wcqmz5ax11lhp5k8znm2q"; depends=[Biobase GEOquery gplots igraph impute limma MASS plyr RColorBrewer RCurl zoo]; }; - EGSEA = derive2 { name="EGSEA"; version="1.28.0"; sha256="008id8nmf5aa2vzh9is7v0fvgljgndz2b37dnnc4w4d16399bm0z"; depends=[AnnotationDbi Biobase DT edgeR EGSEAdata gage ggplot2 globaltest gplots GSVA HTMLUtils htmlwidgets hwriter limma metap org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db PADOG pathview plotly RColorBrewer safe stringi topGO]; }; - ELMER = derive2 { name="ELMER"; version="2.24.1"; sha256="1dk0glasd5rrilbbdf7nql7yn8n8gp7cvhbbl51949v71qndxpn9"; depends=[biomaRt circlize ComplexHeatmap DelayedArray doParallel downloader dplyr ELMER_data GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggpubr ggrepel gridExtra Gviz IRanges lattice magrittr Matrix MultiAssayExperiment plotly plyr progress purrr readr reshape reshape2 rmarkdown rtracklayer rvest S4Vectors scales stringr SummarizedExperiment TCGAbiolinks tibble tidyr xml2]; }; - EMDomics = derive2 { name="EMDomics"; version="2.30.0"; sha256="1kmv75qj51jjrbqm8ydwrskp1r11z3jmhiyb2vl7sh40dqv69hn3"; depends=[BiocParallel CDFt emdist ggplot2 matrixStats preprocessCore]; }; - ENmix = derive2 { name="ENmix"; version="1.36.08"; sha256="1pvyz9a2cmdmci7fisk2rhbq2fjvpc953w9rsf6k9drkgs466506"; depends=[AnnotationHub Biobase doParallel dynamicTreeCut ExperimentHub foreach genefilter geneplotter gplots gtools illuminaio impute IRanges irlba matrixStats minfi quadprog RPMM S4Vectors SummarizedExperiment]; }; - ERSSA = derive2 { name="ERSSA"; version="1.18.0"; sha256="1gzd2g837g4iqmjc2vd9f0bg5va0prnam7nd1hvr0rdkg3l525fw"; depends=[BiocParallel DESeq2 edgeR ggplot2 plyr RColorBrewer]; }; - EWCE = derive2 { name="EWCE"; version="1.8.2"; sha256="0di7qbw3yrry44fxcfnksxpf41pdl91xjrxc6cpajlmlyzgarp66"; depends=[BiocParallel data_table DelayedArray dplyr ewceData ggplot2 HGNChelper limma Matrix orthogene reshape2 RNOmni SingleCellExperiment stringr SummarizedExperiment]; }; - EasyCellType = derive2 { name="EasyCellType"; version="1.2.0"; sha256="1l68g7hlcfmszf9sg1nagkv00sgd80klgi25jizabj6c1mg0pm13"; depends=[AnnotationDbi clusterProfiler dplyr forcats ggplot2 magrittr org_Hs_eg_db org_Mm_eg_db rlang]; }; - EmpiricalBrownsMethod = derive2 { name="EmpiricalBrownsMethod"; version="1.28.0"; sha256="05vavncfcqq8klgiwqpw7nm7s9q96ldj0xfss66jbxm9wbmmv14r"; depends=[]; }; - EnMCB = derive2 { name="EnMCB"; version="1.12.0"; sha256="0flivhd9w26221cx8w9iis61qxlnygd7cyz84p6wkmm9xnyi0rh1"; depends=[BiocFileCache boot e1071 ggplot2 glmnet igraph Matrix mboost rms survival survivalROC survivalsvm]; }; - EnhancedVolcano = derive2 { name="EnhancedVolcano"; version="1.18.0"; sha256="1mcyhgdvfmkkh0rlhf51an7j1zi96lqdhifki2aqmlx0lqvg4qxq"; depends=[ggplot2 ggrepel]; }; - EnrichedHeatmap = derive2 { name="EnrichedHeatmap"; version="1.30.0"; sha256="18p2vjcg76rrjzjl03zgm4yxrgllbd42hg8rvsdbfb0s7brzr7ya"; depends=[circlize ComplexHeatmap GenomicRanges GetoptLong IRanges locfit matrixStats Rcpp]; }; - EnrichmentBrowser = derive2 { name="EnrichmentBrowser"; version="2.30.2"; sha256="0ybv5xg8hj7ald4c7ffpb7i2r2vp159ysvilccm6c2gmw08yfvlm"; depends=[AnnotationDbi BiocFileCache BiocManager edgeR GO_db graph graphite GSEABase hwriter KEGGgraph KEGGREST limma pathview Rgraphviz S4Vectors safe SPIA SummarizedExperiment]; }; - EpiCompare = derive2 { name="EpiCompare"; version="1.4.0"; sha256="0sizvxf8ggg8vndwyvcyr49lfllqfssv57k1i1q33h2kbk2jghl6"; depends=[AnnotationHub BiocGenerics BRGenomics ChIPseeker data_table downloadthis genomation GenomeInfoDb GenomicRanges ggplot2 htmltools IRanges plotly reshape2 rmarkdown rtracklayer stringr]; }; - EpiDISH = derive2 { name="EpiDISH"; version="2.16.0"; sha256="00s8ijpamkjl1b8pzh6b4zy6rk3wr9w1kbgar9db9inma956q0wv"; depends=[e1071 locfdr MASS Matrix matrixStats quadprog stringr]; }; - EpiMix = derive2 { name="EpiMix"; version="1.2.4"; sha256="13yslqyyxyx972vpgpylz0b1p1ml63zvpnm8828qq44ys96a0wgg"; depends=[AnnotationDbi AnnotationHub Biobase biomaRt data_table doParallel doSNOW downloader dplyr ELMER_data EpiMix_data ExperimentHub foreach GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 impute IRanges limma plyr progress R_matlab RColorBrewer RCurl rlang RPMM S4Vectors SummarizedExperiment tibble tidyr]; }; - EpiTxDb = derive2 { name="EpiTxDb"; version="1.12.0"; sha256="0qpaqf5cyh95d91hkd8gs85kx3sz0dywfp5cg3wp6psz5wian24y"; depends=[AnnotationDbi BiocFileCache BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges httr IRanges Modstrings RSQLite S4Vectors tRNAdbImport xml2]; }; - EventPointer = derive2 { name="EventPointer"; version="3.8.0"; sha256="16jdzy9dj1hk0azb9ma86s1qcwxf02xj1plf8cjgmrrvpg1z6ix8"; depends=[abind affxparser Biostrings BSgenome cobs doParallel fgsea foreach GenomeInfoDb GenomicFeatures GenomicRanges glmnet graph igraph IRanges iterators limma lpSolve MASS Matrix matrixStats nnls poibin prodlim qvalue RBGL rhdf5 S4Vectors SGSeq speedglm stringr SummarizedExperiment tximport]; }; - ExCluster = derive2 { name="ExCluster"; version="1.18.0"; sha256="0ji516fx1mai38jb685gj538wsyg2ivplsf731nlhqwpg4zzc0cs"; depends=[GenomicRanges IRanges matrixStats Rsubread rtracklayer]; }; - ExiMiR = derive2 { name="ExiMiR"; version="2.42.0"; sha256="17vdlgriwm6imkfnksgcjrg0gj8zygwnhlahxlrc1qnllcv78f6c"; depends=[affy affyio Biobase limma preprocessCore]; }; - ExperimentHub = derive2 { name="ExperimentHub"; version="2.8.1"; sha256="1md6lan98h95jv776zyvl5im39gz4h6fdxw571vfahgr4b2nxvm4"; depends=[AnnotationHub BiocFileCache BiocGenerics BiocManager rappdirs S4Vectors]; }; - ExperimentHubData = derive2 { name="ExperimentHubData"; version="1.26.1"; sha256="0r6p6h5hvz8wqxwnw1ad0ibfvx8qkvx6nbykm9b9dbbk14kl6rn7"; depends=[AnnotationHubData BiocGenerics BiocManager curl DBI ExperimentHub httr S4Vectors]; }; - ExperimentSubset = derive2 { name="ExperimentSubset"; version="1.10.0"; sha256="135c67l02m5nj7g72rwwwhdg4jdlqjxjj62rs4nvp1qla779amh7"; depends=[Matrix S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment TreeSummarizedExperiment]; }; - ExploreModelMatrix = derive2 { name="ExploreModelMatrix"; version="1.12.0"; sha256="01lkshvlc7f9fd8gyzk9kymq6k3a4h00vpg1blm9b723rbj9jb2d"; depends=[cowplot dplyr DT ggplot2 limma magrittr MASS rintrojs S4Vectors scales shiny shinydashboard shinyjs tibble tidyr]; }; - ExpressionAtlas = derive2 { name="ExpressionAtlas"; version="1.28.0"; sha256="1vr2lc06qqp33nx15kiw9pq1h6rqf09ngwgkmafxqk8lsiw5i44j"; depends=[Biobase BiocStyle httr jsonlite limma RCurl S4Vectors SummarizedExperiment XML xml2]; }; - FCBF = derive2 { name="FCBF"; version="2.8.0"; sha256="1clg3s2av70j0pm0yj0ckvlklkkg5zb0r057pz6wmklllfkmx1dv"; depends=[ggplot2 gridExtra mclust pbapply SummarizedExperiment]; }; - FEAST = derive2 { name="FEAST"; version="1.8.0"; sha256="1qgrir3zr1yp8hx9wxhyqyrvjx7qy9pjfb9h68m5zg5111ckrak4"; depends=[BiocParallel irlba matrixStats mclust SC3 SingleCellExperiment SummarizedExperiment TSCAN]; }; - FELLA = derive2 { name="FELLA"; version="1.20.0"; sha256="18qdlf1ajjaw0asyhs7spj06f3rxyci57h03s9ybr0zg2wa8l89j"; depends=[igraph KEGGREST Matrix plyr]; }; - FGNet = derive2 { name="FGNet"; version="3.34.0"; sha256="1l4ix8a5qy6dx8s3m877cnqsm0s4pn89v94p754iakcwygsjl9l4"; depends=[hwriter igraph plotrix png R_utils RColorBrewer reshape2 XML]; }; - FISHalyseR = derive2 { name="FISHalyseR"; version="1.34.0"; sha256="0518nswsxp0fxirrb842gbb9yijlr4clngv09h6afaq3ba4d0grv"; depends=[abind EBImage]; }; - FLAMES = derive2 { name="FLAMES"; version="1.6.0"; sha256="13hk0igk99nkjbplr3lbgsm24jnrdhcfggqlr61x61dhasxqxiqi"; depends=[bambu basilisk BiocGenerics Biostrings circlize ComplexHeatmap cowplot dplyr DropletUtils GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 gridExtra igraph jsonlite magrittr Matrix MultiAssayExperiment RColorBrewer Rcpp reticulate Rhtslib Rsamtools rtracklayer S4Vectors scater scran scuttle SingleCellExperiment stringr SummarizedExperiment tidyr withr zlibbioc]; }; - FRASER = derive2 { name="FRASER"; version="1.12.1"; sha256="04i63r5lnrvy0rw0i5k3399j2yv8x7sw4l4496kirp2vms7cwxya"; depends=[AnnotationDbi BBmisc Biobase BiocGenerics BiocParallel biomaRt BSgenome cowplot data_table DelayedArray DelayedMatrixStats extraDistr generics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel HDF5Array IRanges matrixStats OUTRIDER pcaMethods pheatmap plotly PRROC R_utils RColorBrewer Rcpp RcppArmadillo rhdf5 Rsamtools Rsubread S4Vectors SummarizedExperiment tibble VGAM]; }; - FRGEpistasis = derive2 { name="FRGEpistasis"; version="1.36.0"; sha256="02y6bnjl5yh9gzbgypnh8miixgzrkywwi5af5llai833wqiq094i"; depends=[fda MASS]; }; - FScanR = derive2 { name="FScanR"; version="1.10.0"; sha256="1v4iq2wlvxf0wbs2d9ip3pcfx3a533pqp4as9pr0f6q57cvqi2bs"; depends=[]; }; - FamAgg = derive2 { name="FamAgg"; version="1.28.0"; sha256="1rf41iydh9d0x46y1v7324rmzkgyn5s80z74lby6935jgvjk43qv"; depends=[BiocGenerics gap igraph kinship2 Matrix survey]; }; - FastqCleaner = derive2 { name="FastqCleaner"; version="1.18.0"; sha256="0rn6f7ms4ashvghmnjwkif578rn4lr01dg3iv6jy1mg58i49pb58"; depends=[Biostrings DT htmltools IRanges Rcpp S4Vectors shiny shinyBS ShortRead]; }; - FeatSeekR = derive2 { name="FeatSeekR"; version="1.0.0"; sha256="0jg4xm78ga2dv7qg3gx4inkjiknkvwfzgkmmdnpmgmrzsvqs9i7c"; depends=[MASS pheatmap pracma SummarizedExperiment]; }; - FilterFFPE = derive2 { name="FilterFFPE"; version="1.10.0"; sha256="1d083g13xf4gra01y1kf5v4j10zs7j1iz47ci3nwjyzq2xa5jrkw"; depends=[doParallel foreach GenomicRanges IRanges Rsamtools S4Vectors]; }; - FindIT2 = derive2 { name="FindIT2"; version="1.6.0"; sha256="0h3fnl5q5hivin4n42fkgknz8kiiqidblj2hlkbkm6p69pvjskfi"; depends=[BiocGenerics BiocParallel dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel glmnet IRanges MultiAssayExperiment patchwork progress purrr qvalue rlang rtracklayer S4Vectors stringr SummarizedExperiment tibble tidyr withr]; }; - FitHiC = derive2 { name="FitHiC"; version="1.26.0"; sha256="0mqrzh1rcwyqlhq9wxcy4gp47hsb70qrsissm9nj0cb9j6ihi407"; depends=[data_table fdrtool Rcpp]; }; - FlowSOM = derive2 { name="FlowSOM"; version="2.8.0"; sha256="13y0ny61skj14mfhjwpa5zmflzdqxy2vf6gd4m9358g4wxfbhkv0"; depends=[BiocGenerics colorRamps ConsensusClusterPlus dplyr flowCore ggforce ggnewscale ggplot2 ggpubr igraph magrittr rlang Rtsne tidyr XML]; }; - FoldGO = derive2 { name="FoldGO"; version="1.18.0"; sha256="0h08yv1kykllaanc562ncwv3ajic7cd4wcqba24nlbh6agsazwyk"; depends=[ggplot2 tidyr topGO]; }; - FunChIP = derive2 { name="FunChIP"; version="1.26.0"; sha256="0z8j1qhll4qi07jvq2b85n748mk0429p2miw46nkx6rrhfb8fzcd"; depends=[doParallel fda foreach GenomeInfoDb GenomicAlignments GenomicRanges RColorBrewer Rcpp Rsamtools shiny]; }; - FuseSOM = derive2 { name="FuseSOM"; version="1.2.0"; sha256="111xx7lyfgrypvr0gy5dqm1lydj6gypscnrx38yn30l58qq9ywp8"; depends=[analogue cluster coop diptest fastcluster FCPS fpc ggplot2 ggplotify ggpubr pheatmap proxy psych Rcpp S4Vectors stringr SummarizedExperiment]; }; - GA4GHclient = derive2 { name="GA4GHclient"; version="1.24.0"; sha256="1mr4dzbk9y90i75xwyif3hf71mi1k86dn3jr66i1d9hqky9q807i"; depends=[BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges httr IRanges jsonlite S4Vectors VariantAnnotation]; }; - GA4GHshiny = derive2 { name="GA4GHshiny"; version="1.22.0"; sha256="05yhc7hhrikaq7amhc50mxsj69dsp8sfj277k3y6zj8y34wil6a9"; depends=[AnnotationDbi BiocGenerics dplyr DT GA4GHclient GenomeInfoDb GenomicFeatures openxlsx purrr S4Vectors shiny shinyjs shinythemes tidyr]; }; - GARS = derive2 { name="GARS"; version="1.20.0"; sha256="1hr8gnj3qfizimfhkgnw8nrrz4axpmvdf567fdwa6pf5lxp2r7iy"; depends=[cluster DaMiRseq ggplot2 MLSeq SummarizedExperiment]; }; - GAprediction = derive2 { name="GAprediction"; version="1.26.0"; sha256="1sr3dj6w6mcvypakcryw0zkdjkp1lzx4wjc9jrwq04cqclq8dyqd"; depends=[glmnet Matrix]; }; - GBScleanR = derive2 { name="GBScleanR"; version="1.4.4"; sha256="1z3acpy4cxw9q92bzfd5c8b4mnj6zg2akg575ygr5fzbxb0fk7rc"; depends=[expm gdsfmt ggplot2 Rcpp RcppParallel SeqArray tidyr]; }; - GCSscore = derive2 { name="GCSscore"; version="1.14.0"; sha256="0fqr0sgplpbkdpvwgi8fpmwmnqja41622pvkkzsalbzai021hgp3"; depends=[affxparser Biobase BiocManager data_table devtools dplR RSQLite stringr]; }; - GDCRNATools = derive2 { name="GDCRNATools"; version="1.20.1"; sha256="1s80vqh5z7zvf0vjfhwvd6rxc9s96fvqv528px9dlxv6fl52g103"; depends=[BiocParallel biomaRt clusterProfiler DESeq2 DOSE DT edgeR GenomicDataCommons ggplot2 gplots jsonlite limma org_Hs_eg_db pathview rjson shiny survival survminer XML]; }; - GDSArray = derive2 { name="GDSArray"; version="1.20.0"; sha256="0p2mw6j04cr08yw1rnjsddb4fm24h973m7pr8rznzsjnki3r944w"; depends=[BiocGenerics DelayedArray gdsfmt S4Vectors SeqArray SNPRelate]; }; - GEM = derive2 { name="GEM"; version="1.26.0"; sha256="1dr3d2jsbzk858wnbqgv2gy2qspx9sg49lmqvb8wl4m01jm3zbb4"; depends=[ggplot2]; }; - GENESIS = derive2 { name="GENESIS"; version="2.30.0"; sha256="0lbd8fqv3j1wkc17ah30ylfskj29cvb8d61xlja430kfkfky2n97"; depends=[Biobase BiocGenerics BiocParallel data_table gdsfmt GenomicRanges GWASTools igraph IRanges Matrix reshape2 S4Vectors SeqArray SeqVarTools SNPRelate]; }; - GENIE3 = derive2 { name="GENIE3"; version="1.22.0"; sha256="1q4wi3k95c8vsyfx6359p2p29ascjg1cxmpp9bf99ixbjs71rd33"; depends=[dplyr reshape2]; }; - GEOexplorer = derive2 { name="GEOexplorer"; version="1.6.0"; sha256="1dh94sh3zypqkvgijmhi6jcsqnh5hha178vcmsk7xfbdrrqjcdva"; depends=[Biobase DT factoextra GEOquery ggplot2 heatmaply htmltools impute limma pheatmap plotly scales shiny shinyBS shinybusy shinyHeatmaply stringr umap]; }; - GEOfastq = derive2 { name="GEOfastq"; version="1.8.0"; sha256="0nb8a83i0v7pjrximzqjfrcflxdhbv7y2gjz9bcy20yvcgzi6pn8"; depends=[doParallel foreach plyr RCurl rvest stringr xml2]; }; - GEOmetadb = derive2 { name="GEOmetadb"; version="1.62.0"; sha256="0xlm1yf2n2wi8sy6b4l7bnkb5dzgd2nfnpp2wrxncp163rrxi40q"; depends=[GEOquery RSQLite]; }; - GEOquery = derive2 { name="GEOquery"; version="2.68.0"; sha256="1xyrfj8b7j2wdjlbmwhx1c0hfbvr7l7jxyw2v64fbw8604zprv4s"; depends=[Biobase curl data_table dplyr limma magrittr R_utils readr tidyr xml2]; }; - GEOsubmission = derive2 { name="GEOsubmission"; version="1.52.0"; sha256="0paqcd10dgs25r4hpx273qsc6dpwy3n9il4xjxhg04k4dl02r6a9"; depends=[affy Biobase]; }; - GEWIST = derive2 { name="GEWIST"; version="1.44.0"; sha256="1cwv3sx2dv9flbjfrbjnzng8l3kf76x7jiljjcjs795j4lgjnprr"; depends=[car]; }; - GGPA = derive2 { name="GGPA"; version="1.12.1"; sha256="1gfq02jay0j8anz0n95y6d6dnkv2h0dx4mpjv6kbnqarw4pqb5cc"; depends=[GGally matrixStats network Rcpp RcppArmadillo scales sna]; }; - GIGSEA = derive2 { name="GIGSEA"; version="1.18.0"; sha256="1gc2jf5kvl50f1xiqgbgbhgwck8drx1d3g5p2lhqbwgx58zx6xv3"; depends=[locfdr MASS Matrix]; }; - GISPA = derive2 { name="GISPA"; version="1.24.0"; sha256="0mm0nmjc05f21ya9mnf46qgld04w21k3c4xf48ppm7lrfa5blanz"; depends=[Biobase changepoint data_table genefilter GSEABase HH lattice latticeExtra plyr scatterplot3d]; }; - GLAD = derive2 { name="GLAD"; version="2.64.0"; sha256="0fi7wwn0ai4bwy8wgwl4dh3fbl6zhrkcy662dc1fcnk5i7rnv3y5"; depends=[aws]; }; - GMRP = derive2 { name="GMRP"; version="1.28.0"; sha256="0d0pknr29x33brvxbnxbs5niiybbjs7vcszggdimflsihjblqvjj"; depends=[diagram GenomicRanges plotrix]; }; - GNET2 = derive2 { name="GNET2"; version="1.16.0"; sha256="1rlba3gqn5yyd2glbcfb62dcqkfhvhk33z2maqlr8x7814qnadm3"; depends=[DiagrammeR dplyr ggplot2 igraph matrixStats Rcpp reshape2 SummarizedExperiment xgboost]; }; - GOSemSim = derive2 { name="GOSemSim"; version="2.26.1"; sha256="15z7wqnp0s8fiysl3qc76pjaj3xik2br2mz2z3nmf28vxig69mx9"; depends=[AnnotationDbi GO_db Rcpp]; }; - GOSim = derive2 { name="GOSim"; version="1.38.0"; sha256="1i6fhgliiq7zxqv14mva1v6z0gibqqspdjaibhalxlm151aym6k1"; depends=[annotate AnnotationDbi cluster corpcor flexmix GO_db graph Matrix org_Hs_eg_db RBGL Rcpp topGO]; }; - GOTHiC = derive2 { name="GOTHiC"; version="1.36.0"; sha256="13cvcrb9s2srr3nk3gslizy3ydd3wndis13cvhjy77hbbmp7ykc0"; depends=[BiocGenerics BiocManager Biostrings BSgenome data_table GenomeInfoDb GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors ShortRead]; }; - GOexpress = derive2 { name="GOexpress"; version="1.34.0"; sha256="1x58xgv2dvxfb5kilxflaamq0dxbcb45q60f2zdd39ar0fw38026"; depends=[Biobase biomaRt ggplot2 gplots randomForest RColorBrewer RCurl stringr]; }; - GOfuncR = derive2 { name="GOfuncR"; version="1.20.0"; sha256="05509xf768x8asqadjj5s50m0yqnklrxi28bmqd22cn6cbmahszw"; depends=[AnnotationDbi GenomicRanges gtools IRanges mapplots Rcpp vioplot]; }; - GOpro = derive2 { name="GOpro"; version="1.26.0"; sha256="1hcsxsqykdkxyj13g824j9gkrsf7fbknj81556a8f0f2pqnm52ws"; depends=[AnnotationDbi BH dendextend doParallel foreach GO_db IRanges MultiAssayExperiment org_Hs_eg_db Rcpp S4Vectors]; }; - GOstats = derive2 { name="GOstats"; version="2.66.0"; sha256="1jjcjc1zp42l3gw36rr84al07ghih0cjx4p8gn8rlmv1jsz6kp1h"; depends=[annotate AnnotationDbi AnnotationForge Biobase Category GO_db graph RBGL Rgraphviz]; }; - GOsummaries = derive2 { name="GOsummaries"; version="2.36.0"; sha256="1czr3vc5y9v1nz1x0cdi308gwrrv1g015x14nkw60024sxd858r2"; depends=[ggplot2 gProfileR gtable limma plyr Rcpp reshape2]; }; - GPA = derive2 { name="GPA"; version="1.12.0"; sha256="109vp1ngainvirq49p4w9azxjjj95f0b3f3wr766mx808cick9wl"; depends=[DT ggplot2 ggrepel plyr Rcpp shiny shinyBS vegan]; }; - GRENITS = derive2 { name="GRENITS"; version="1.52.1"; sha256="1q0f8bbn0r86xysvbainqn42ff38v2v3cyk2wjizk69wvd6bbzxm"; depends=[ggplot2 Rcpp RcppArmadillo reshape2]; }; - GRaNIE = derive2 { name="GRaNIE"; version="1.4.1"; sha256="0075wa85xj243gx5pxhp7j5xrd137wx43z7y9165wvvh6dx106h5"; depends=[AnnotationHub biomaRt Biostrings checkmate circlize colorspace ComplexHeatmap data_table DESeq2 dplyr ensembldb forcats futile_logger GenomeInfoDb GenomicRanges ggplot2 gridExtra igraph limma magrittr Matrix matrixStats patchwork progress RColorBrewer readr reshape2 rlang S4Vectors scales stringr SummarizedExperiment tibble tidyr tidyselect topGO viridis]; }; - GRmetrics = derive2 { name="GRmetrics"; version="1.26.0"; sha256="03xcv9s22s66iwpg73jzch85gsq6shjqb0mp89529yi0nrxflpgn"; depends=[drc ggplot2 plotly S4Vectors SummarizedExperiment]; }; - GSALightning = derive2 { name="GSALightning"; version="1.28.0"; sha256="0k0vl3px0w32wkfd8mh9y85lmasn9knzmkr48pvjig27v8q23pc6"; depends=[data_table Matrix]; }; - GSAR = derive2 { name="GSAR"; version="1.34.0"; sha256="0xqzl1r0ikck8yyq2n173khc98jky6by52vnnsw8awqqvnm8rnm2"; depends=[igraph]; }; - GSCA = derive2 { name="GSCA"; version="2.30.0"; sha256="1kxbsxj12n4jq1i73ah72p4l5kj0slbh4qz1spxsvgn02gv7nr41"; depends=[ggplot2 gplots RColorBrewer reshape2 rhdf5 shiny sp]; }; - GSEABase = derive2 { name="GSEABase"; version="1.62.0"; sha256="0xfcgvsglcwkwsb1azmp4n4hx95fxnjk7rlwggb1f5rjw440qjnh"; depends=[annotate AnnotationDbi Biobase BiocGenerics graph XML]; }; - GSEABenchmarkeR = derive2 { name="GSEABenchmarkeR"; version="1.20.1"; sha256="1bv333ajia4sjm7f669wf99iqya2y809gp65sv5l7xm43irqsckb"; depends=[AnnotationDbi AnnotationHub Biobase BiocFileCache BiocParallel edgeR EnrichmentBrowser ExperimentHub KEGGandMetacoreDzPathwaysGEO KEGGdzPathwaysGEO S4Vectors SummarizedExperiment]; }; - GSEAlm = derive2 { name="GSEAlm"; version="1.60.0"; sha256="0ifh3lwmnciw5wwa7mbilrawcqkbzvylhvid5dnc14vmbagrcal3"; depends=[Biobase]; }; - GSEAmining = derive2 { name="GSEAmining"; version="1.10.0"; sha256="1xbd6z2z6gryd90x8b1yk3xdh7fvhhg0axmfrr7w09274akg9cd8"; depends=[dendextend dplyr ggplot2 ggwordcloud gridExtra rlang stringr tibble tidytext]; }; - GSRI = derive2 { name="GSRI"; version="2.48.0"; sha256="07ad5fc72rjylfm4j547nj2m3vjl7hdan7bcb3a728s6n1i2xriq"; depends=[Biobase fdrtool genefilter GSEABase les]; }; - GSReg = derive2 { name="GSReg"; version="1.34.0"; sha256="08rlgc9r9zjrc3kzvmrka340hbpfbbz708zrjfh4sda4zwca8dmb"; depends=[AnnotationDbi GenomicFeatures Homo_sapiens org_Hs_eg_db]; }; - GSVA = derive2 { name="GSVA"; version="1.48.3"; sha256="0ljfw65ray9ks8g55bfzn0c1w4412y4a7996zddywn5qj5pkjkfb"; depends=[Biobase BiocParallel BiocSingular DelayedArray DelayedMatrixStats GSEABase HDF5Array IRanges Matrix S4Vectors SingleCellExperiment sparseMatrixStats SummarizedExperiment]; }; - GSgalgoR = derive2 { name="GSgalgoR"; version="1.10.0"; sha256="0aza5pmsvk0vwb8azp4n2yjnhv1wbzp947g6mhh4g4dbd0dkkpsh"; depends=[cluster doParallel foreach matchingR nsga2R proxy survival]; }; - GUIDEseq = derive2 { name="GUIDEseq"; version="1.30.0"; sha256="1jcq7b69i2y03qwimjmj7wr24ji4m194abspgsvnl73hw0jxiamn"; depends=[BiocGenerics Biostrings BSgenome ChIPpeakAnno CRISPRseek data_table dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 hash IRanges limma matrixStats multtest openxlsx patchwork purrr rio rlang Rsamtools S4Vectors stringr tidyr]; }; - GWAS_BAYES = derive2 { name="GWAS.BAYES"; version="1.10.0"; sha256="18xgrnjcxv8gvl38qhf2nry85lk6rwd4dc1zixh57nw4vc1mh4r2"; depends=[caret GA limma MASS Matrix memoise]; }; - GWASTools = derive2 { name="GWASTools"; version="1.46.0"; sha256="1g86xg2d9wi6xijhc89zxhbw190aviw9nkwvbwgz85jf71wf34hv"; depends=[Biobase data_table DBI DNAcopy gdsfmt GWASExactHW lmtest logistf quantsmooth RSQLite sandwich survival]; }; - GWENA = derive2 { name="GWENA"; version="1.10.0"; sha256="11hnvriwib12rn4vfzd7ggiknngrqcxkvhsb0r4bz80cwayinrxm"; depends=[cluster dplyr dynamicTreeCut ggplot2 gprofiler2 igraph magrittr matrixStats NetRep purrr RColorBrewer rlist stringr SummarizedExperiment tibble tidyr WGCNA]; }; - GateFinder = derive2 { name="GateFinder"; version="1.20.0"; sha256="09c752vk08gn1qbdv7759mafqlpvg07qk933sqvfhhcr7vf3rr58"; depends=[diptest flowCore flowFP mvoutlier splancs]; }; - GenProSeq = derive2 { name="GenProSeq"; version="1.4.2"; sha256="1cmxs7l98zcg8037qljlq3mx5ijjhsqvc1wn050bs39cmlaj02jw"; depends=[CatEncoders DeepPINCS keras mclust reticulate tensorflow ttgsea word2vec]; }; - GenVisR = derive2 { name="GenVisR"; version="1.31.1"; sha256="0507hmgv3gl8rl7hnha387yjsmhv9hfysvm4s9whqpqsgm5d4iqp"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings BSgenome data_table DBI GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra gtable gtools IRanges plyr reshape2 Rsamtools scales VariantAnnotation viridis]; }; - GeneBreak = derive2 { name="GeneBreak"; version="1.30.0"; sha256="031i2z57hra21c52k4awdkzn6hg1dr31mb6360vq2br37nc07n04"; depends=[CGHbase CGHcall GenomicRanges QDNAseq]; }; - GeneExpressionSignature = derive2 { name="GeneExpressionSignature"; version="1.46.0"; sha256="0lhrjzv26dffxmkixj5jn39rrxxvcjiams199qm56l30qsicx8xv"; depends=[Biobase]; }; - GeneGA = derive2 { name="GeneGA"; version="1.50.0"; sha256="1hzhrnl0i9h0ldbqb604wcdj93bnb6f4s7wz6llsa0266hzrkys7"; depends=[hash seqinr]; }; - GeneGeneInteR = derive2 { name="GeneGeneInteR"; version="1.26.0"; sha256="1rpvan7m0lf9q5aix3di65hvdjkrssl3azs9ws5iiszsdmghs0fm"; depends=[data_table FactoMineR GenomicRanges igraph IRanges kernlab mvtnorm Rsamtools snpStats]; }; - GeneMeta = derive2 { name="GeneMeta"; version="1.72.0"; sha256="07sj05wk8fbq0kdwvgm7rahp8mwri08cmlz2xcl44n85szv2mpji"; depends=[Biobase genefilter]; }; - GeneNetworkBuilder = derive2 { name="GeneNetworkBuilder"; version="1.42.0"; sha256="0v6v6ij4cjbf1w0dvkfkw9qh0nsydd51rqmzaxcl0spry6r5z5zn"; depends=[graph htmlwidgets plyr Rcpp Rgraphviz rjson XML]; }; - GeneOverlap = derive2 { name="GeneOverlap"; version="1.36.0"; sha256="1bimsayaf68j15im591r6rbvydhbmiqcp1pphd5zzg6hzp6va927"; depends=[gplots RColorBrewer]; }; - GeneRegionScan = derive2 { name="GeneRegionScan"; version="1.56.0"; sha256="1z5qs7v9s6r72kmbkkv2krw89hnxg6lr0751jgyhkh2kwdh6k7va"; depends=[affxparser Biobase Biostrings RColorBrewer S4Vectors]; }; - GeneSelectMMD = derive2 { name="GeneSelectMMD"; version="2.44.1"; sha256="0cx48dqdsry0a099f9s5yx1frbfnqsz9vrvdg2r8ika1inngzs8y"; depends=[Biobase limma MASS]; }; - GeneStructureTools = derive2 { name="GeneStructureTools"; version="1.20.0"; sha256="04pln8ix4cmca3bq460b3rk57bj68rm3817mgpyh8l9425v6s0j6"; depends=[Biostrings BSgenome_Mmusculus_UCSC_mm10 data_table GenomicRanges Gviz IRanges plyr rtracklayer S4Vectors stringdist stringr]; }; - GeneTonic = derive2 { name="GeneTonic"; version="2.4.2"; sha256="1vblvchpi83va0v0prgg4by9sxrni9jh8faq1b1kahy4bw9aa83x"; depends=[AnnotationDbi backbone bs4Dash circlize colorspace colourpicker ComplexHeatmap ComplexUpset dendextend DESeq2 dplyr DT dynamicTreeCut expm ggforce ggplot2 ggrepel ggridges GO_db igraph matrixStats plotly RColorBrewer rintrojs rlang rmarkdown S4Vectors scales shiny shinyAce shinycssloaders shinyWidgets SummarizedExperiment tidyr tippy viridis visNetwork]; }; - GeneticsPed = derive2 { name="GeneticsPed"; version="1.62.1"; sha256="0620gg0hyz06n0843f72xy28a15h7dgx3s4mxj9x647ic82v4cm0"; depends=[gdata genetics MASS]; }; - GenomAutomorphism = derive2 { name="GenomAutomorphism"; version="1.2.0"; sha256="0idffiapx9ycdaj5hpf50x5xhpgwb2a5gbfajmfrgw5g467qsqvp"; depends=[BiocGenerics BiocParallel Biostrings data_table doParallel dplyr foreach GenomeInfoDb GenomicRanges IRanges numbers S4Vectors]; }; - GenomeInfoDb = derive2 { name="GenomeInfoDb"; version="1.36.4"; sha256="0wwh72sj894m3awk4g2zmkkwqafdjyxzsr49vnd1fiyz909hw02a"; depends=[BiocGenerics GenomeInfoDbData IRanges RCurl S4Vectors]; }; - GenomicAlignments = derive2 { name="GenomicAlignments"; version="1.36.0"; sha256="1irzcz9s97gqbyj9j71wxv2ikdfd8g14296fg33w2ykfdm80nzf0"; depends=[BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; }; - GenomicDataCommons = derive2 { name="GenomicDataCommons"; version="1.24.3"; sha256="1grvria7lx7p0py3w8yi0j41bpfx951lds5db7jdiq0j8l75fh38"; depends=[dplyr GenomicRanges httr IRanges jsonlite magrittr rappdirs readr rlang tibble tidyr xml2]; }; - GenomicDistributions = derive2 { name="GenomicDistributions"; version="1.8.0"; sha256="1bxq7mqy8s9dcj1wsjzbrszvi1cfphvjbmxvb1pk1mxxa03zipjs"; depends=[Biostrings broom data_table dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges plyr reshape2 scales]; }; - GenomicFeatures = derive2 { name="GenomicFeatures"; version="1.52.2"; sha256="0givyx77gvx24wgq180jsb2q1b8g4j49rs6bxdmd0l04a87hm9cr"; depends=[AnnotationDbi Biobase BiocGenerics BiocIO biomaRt Biostrings DBI GenomeInfoDb GenomicRanges IRanges RCurl RSQLite rtracklayer S4Vectors XVector]; }; - GenomicFiles = derive2 { name="GenomicFiles"; version="1.36.0"; sha256="0nxz8lvpmyllgs1ksgbha8qqs4fhppkg5casppnas9x47dj4bxph"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges MatrixGenerics Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; - GenomicInteractionNodes = derive2 { name="GenomicInteractionNodes"; version="1.4.0"; sha256="1wjlmydi74rsiqxg1pwz3f9zdc28p4xp4fa1lbjfskkd6b36d5p5"; depends=[AnnotationDbi GenomeInfoDb GenomicFeatures GenomicRanges GO_db graph IRanges RBGL S4Vectors]; }; - GenomicInteractions = derive2 { name="GenomicInteractions"; version="1.34.0"; sha256="0qhb2mm5nynnw0cj5da0i6hb1bz7cyns0gp7xy0wscmfyh2wahbv"; depends=[Biobase BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz igraph InteractionSet IRanges Rsamtools rtracklayer S4Vectors stringr]; }; - GenomicOZone = derive2 { name="GenomicOZone"; version="1.14.0"; sha256="0k4f22qnpwg227kxp68p93nx7q4gkkxd4d4z3dr104svgfidgq8k"; depends=[biomaRt Ckmeans_1d_dp GenomeInfoDb GenomicRanges ggbio ggplot2 gridExtra IRanges lsr plyr Rdpack S4Vectors]; }; - GenomicRanges = derive2 { name="GenomicRanges"; version="1.52.1"; sha256="0n6b4kzyswhvakzvaql2x2j15r5ycx9ggvfmqq630m7xy3qzzrr0"; depends=[BiocGenerics GenomeInfoDb IRanges S4Vectors XVector]; }; - GenomicScores = derive2 { name="GenomicScores"; version="2.12.1"; sha256="1bs13aqb7yaz7bw6nscygpifcdn2dnkzkpqr2spvj2ws38lsahsz"; depends=[AnnotationHub Biobase BiocFileCache BiocGenerics BiocManager Biostrings DelayedArray GenomeInfoDb GenomicRanges HDF5Array httr IRanges rhdf5 S4Vectors XML]; }; - GenomicSuperSignature = derive2 { name="GenomicSuperSignature"; version="1.8.0"; sha256="1wajx2r8dcscdgpz2dd1bdhpln258gpqs4bd4plq1ygjhnr2zbw4"; depends=[Biobase BiocFileCache ComplexHeatmap dplyr flextable ggplot2 ggpubr irlba plotly S4Vectors SummarizedExperiment]; }; - GenomicTuples = derive2 { name="GenomicTuples"; version="1.34.0"; sha256="0yf64fjd0d8gspbdksv23j3ry4lab52j7kh7nizv944i387p2q13"; depends=[BiocGenerics data_table GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; - GeoDiff = derive2 { name="GeoDiff"; version="1.6.0"; sha256="15d393xqc315wv98l08yfvxv866ciqccvqqx7zj0z8p2v2p5md18"; depends=[Biobase GeomxTools lme4 Matrix NanoStringNCTools plyr Rcpp RcppArmadillo robust roptim testthat withr]; }; - GeoTcgaData = derive2 { name="GeoTcgaData"; version="2.0.0"; sha256="0fbg9m7w3l6p88ay9h33h7z22y55kxf4k4g55l0gqqcybi164h1i"; depends=[cqn data_table plyr SummarizedExperiment topconfects]; }; - GeomxTools = derive2 { name="GeomxTools"; version="3.4.0"; sha256="0s36gn3ix98qbvxkpplljkw89sblxb49y8p8z7csnp0xdwp5bkkx"; depends=[Biobase BiocGenerics data_table dplyr EnvStats GGally ggplot2 lmerTest NanoStringNCTools readxl reshape2 rjson rlang S4Vectors SeuratObject stringr]; }; - GladiaTOX = derive2 { name="GladiaTOX"; version="1.16.0"; sha256="0bd8bsqycqzbapcj5pcilwf92wb01n7msd3wddsds0iyz97myw3c"; depends=[brew data_table DBI ggplot2 ggrepel numDeriv RColorBrewer RCurl RJSONIO RMySQL RSQLite stringr tidyr XML xtable]; }; - Glimma = derive2 { name="Glimma"; version="2.10.0"; sha256="0171wizl516chzzwnbc2z2bf5sk4a491fcs4yhq5ycqaqpjmbg35"; depends=[DESeq2 edgeR htmlwidgets jsonlite limma S4Vectors SummarizedExperiment]; }; - GlobalAncova = derive2 { name="GlobalAncova"; version="4.18.0"; sha256="1fld18rmi6rqm2nr549a4740w1iq3mf5df67v9ba6h42r4abs1ar"; depends=[annotate AnnotationDbi Biobase corpcor dendextend globaltest GSEABase VGAM]; }; - GmicR = derive2 { name="GmicR"; version="1.14.0"; sha256="1q10gs10br8w06hvb2wiqz5sfn4zwmcvbiqb6i0p7gxbr63s4ka2"; depends=[AnnotationDbi ape bnlearn Category data_table doParallel DT foreach GOstats gRain gRbase GSEABase org_Hs_eg_db org_Mm_eg_db reshape2 shiny WGCNA]; }; - GraphAT = derive2 { name="GraphAT"; version="1.72.0"; sha256="0ibrlwf528687s5kk0hq72j9h8p5p18hrdx3823nr1s70vhysb3m"; depends=[graph MCMCpack]; }; - GraphAlignment = derive2 { name="GraphAlignment"; version="1.64.0"; sha256="1zvmxrwbg72mjdr337azi2lbyaan7syndxqdz8xwas07jglgpycz"; depends=[]; }; - GraphPAC = derive2 { name="GraphPAC"; version="1.42.0"; sha256="0rs71m850qsc9ickxkqlmcrwqsr66z7ji4mqgcg8kii0yjflpkvb"; depends=[igraph iPAC RMallow TSP]; }; - GreyListChIP = derive2 { name="GreyListChIP"; version="1.32.1"; sha256="0z89yikglx077x18qhq6f8f2fa9xni12jz8my9p5sa6zmvnj4dnm"; depends=[BSgenome GenomeInfoDb GenomicAlignments GenomicRanges MASS Rsamtools rtracklayer SummarizedExperiment]; }; - Guitar = derive2 { name="Guitar"; version="2.16.0"; sha256="1v1yw90waq0ccj6pxdipipy5bnk0k762m5kadl4h3jgpcrkf2fvc"; depends=[AnnotationDbi dplyr GenomicFeatures GenomicRanges ggplot2 knitr magrittr rtracklayer]; }; - Gviz = derive2 { name="Gviz"; version="1.44.2"; sha256="0laismy8kklzkg81r5vf1194fbhp2hw952g6jc3zvn2z5y2d4524"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings biovizBase BSgenome digest ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges lattice latticeExtra matrixStats RColorBrewer Rsamtools rtracklayer S4Vectors XVector]; }; - HDF5Array = derive2 { name="HDF5Array"; version="1.28.1"; sha256="1riwxxnbi4z0lf42psh3m3ivxlgmmlnqhgsih6911c754r6s39qg"; depends=[BiocGenerics DelayedArray IRanges Matrix rhdf5 rhdf5filters Rhdf5lib S4Arrays S4Vectors]; }; - HDTD = derive2 { name="HDTD"; version="1.34.1"; sha256="0gyav2g5c7gphqxbj6mr96g06nr1n5jrn8dkidr8l4ripv5ycx59"; depends=[Rcpp RcppArmadillo]; }; - HELP = derive2 { name="HELP"; version="1.58.0"; sha256="1bhyjk2cmyw2s51s474ccykjrja3m3gv6jzdmv7a4zkcfa7fa7wg"; depends=[Biobase]; }; - HEM = derive2 { name="HEM"; version="1.72.0"; sha256="0b5pc1ybml1wk406s1b4pbarcayc9nyf0cvqvr28g7rr8q88kgsq"; depends=[Biobase]; }; - HGC = derive2 { name="HGC"; version="1.8.0"; sha256="1kjhiw6g3an2yvb709idwkhwq8lw27r7d4g2kb5l5b77b0rr81hz"; depends=[ape dendextend dplyr ggplot2 Matrix mclust patchwork RANN Rcpp RcppEigen]; }; - HIBAG = derive2 { name="HIBAG"; version="1.36.4"; sha256="1cck7d7966b2plbqv1sdp6s32nvigi67s0cwmgb1rnqq0jakhp4a"; depends=[RcppParallel]; }; - HIPPO = derive2 { name="HIPPO"; version="1.12.0"; sha256="0lhs56r6wlg586xl18wxzhg8q8mhcm7qd7rjgx4hk50xa9c16cxz"; depends=[dplyr ggplot2 ggrepel gridExtra irlba magrittr Matrix reshape2 rlang Rtsne SingleCellExperiment umap]; }; - HIREewas = derive2 { name="HIREewas"; version="1.18.0"; sha256="0p0mcb5n6y4zw0df2a5irzwg3wmdk8vgp2hvrjr9vswbma8jxxfa"; depends=[gplots quadprog]; }; - HMMcopy = derive2 { name="HMMcopy"; version="1.42.0"; sha256="0vvg7jy38q43v9nvp18h6lhjkkcqgrgzgnhkb1v1fm03g5kg3fi6"; depends=[data_table]; }; - HPAStainR = derive2 { name="HPAStainR"; version="1.9.0"; sha256="1bjysi3x8248f262v4rzi2y50rlzryb987wbvdjy6af84nq7hd09"; depends=[data_table dplyr scales shiny stringr tibble tidyr]; }; - HPAanalyze = derive2 { name="HPAanalyze"; version="1.18.1"; sha256="1sya2ll1jslcv8xnl85gb0n6v9v56wq0746ix5wh45rczkr4vl2w"; depends=[dplyr ggplot2 gridExtra openxlsx tibble xml2]; }; - HPiP = derive2 { name="HPiP"; version="1.6.0"; sha256="0097szmazcpmrs4q2i5rb2d2q3b4lkhskfdzj4mb8hwmh0znrvca"; depends=[caret corrplot dplyr ggplot2 httr igraph magrittr MCL pROC protr PRROC purrr readr stringr tibble tidyr]; }; - HTSFilter = derive2 { name="HTSFilter"; version="1.40.0"; sha256="0415shkdi4sp4glnjn4s2vjzi528bsbci3f0waj245v7kjsddws8"; depends=[Biobase BiocParallel DESeq2 edgeR]; }; - HTSeqGenie = derive2 { name="HTSeqGenie"; version="4.30.0"; sha256="02v2ihwpnp16r022hsnr98g797h4cjc29a5c2d45vqpxbyil4qaf"; depends=[BiocGenerics BiocParallel Biostrings Cairo chipseq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gmapR hwriter IRanges Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment VariantAnnotation VariantTools]; }; - HTqPCR = derive2 { name="HTqPCR"; version="1.54.0"; sha256="12p0jb9bpz4x612vwj77d6l5h8rihfkzmhp8qy1gvv2zmn2a54jf"; depends=[affy Biobase gplots limma RColorBrewer]; }; - Harman = derive2 { name="Harman"; version="1.28.0"; sha256="138w2k7kljgsk68k5jv6fhgm7jfi10mgk8zby51g41908siqdlcl"; depends=[Ckmeans_1d_dp matrixStats Rcpp]; }; - Harshlight = derive2 { name="Harshlight"; version="1.72.0"; sha256="1rg3gx42a68jqbdmbqx7lh97y0rird1lci7146hnxa4svj827d5p"; depends=[affy altcdfenvs Biobase]; }; - Heatplus = derive2 { name="Heatplus"; version="3.8.0"; sha256="031f25w960jp5nhd78v3iv6pib266cpbawhi9rrd7csw89vnswfx"; depends=[RColorBrewer]; }; - HelloRanges = derive2 { name="HelloRanges"; version="1.26.0"; sha256="1qs8p6wblwwxkxg162lxjgpybvh659w30fy7y7y9kh0vvm3846z6"; depends=[BiocGenerics BiocIO Biostrings BSgenome docopt GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; - Herper = derive2 { name="Herper"; version="1.10.1"; sha256="1pvbw1h1fkz420bgr2jcf24m7l38qx6fix4s2gy0q59jcplncfgp"; depends=[reticulate rjson withr]; }; - HiCBricks = derive2 { name="HiCBricks"; version="1.18.0"; sha256="0w8br6cmzxkpxda7sgz03rjh4lzy19fs4ghnhr2ac0dcz18vvjy2"; depends=[BiocParallel curl data_table digest GenomeInfoDb GenomicRanges ggplot2 IRanges jsonlite R_utils R6 RColorBrewer readr reshape2 rhdf5 S4Vectors scales stringr tibble viridis]; }; - HiCDCPlus = derive2 { name="HiCDCPlus"; version="1.8.0"; sha256="0s8wjq3q6bbyk7xd57v0cdkjrcicm59lnsj11q21pj8z1dpzpfh3"; depends=[bbmle Biostrings BSgenome data_table dplyr GenomeInfoDb GenomicInteractions GenomicRanges InteractionSet IRanges MASS pscl R_utils Rcpp rlang rtracklayer S4Vectors tibble tidyr]; }; - HiCDOC = derive2 { name="HiCDOC"; version="1.2.0"; sha256="0cyqpvavv2gjw9w63njnw58mch1x7wjhcz9mrz2bbl3rdpic65v1"; depends=[BiocGenerics BiocParallel data_table GenomeInfoDb GenomicRanges ggExtra ggplot2 ggpubr gridExtra gtools InteractionSet multiHiCcompare pbapply Rcpp rhdf5 S4Vectors SummarizedExperiment zlibbioc]; }; - HiCExperiment = derive2 { name="HiCExperiment"; version="1.0.0"; sha256="1j8p4x8mzxjwirgx9jlqq3vkb7sadmx8w427k8byny0whzndds1r"; depends=[BiocGenerics BiocIO BiocParallel dplyr GenomeInfoDb GenomicRanges InteractionSet IRanges Matrix rhdf5 S4Vectors strawr vroom]; }; - HiCcompare = derive2 { name="HiCcompare"; version="1.22.1"; sha256="0r5ifzd3h4dcj7a31hcpcyrv8dk5fgk1p1a3s8h4yw6485qddj3b"; depends=[BiocParallel data_table dplyr GenomicRanges ggplot2 gridExtra gtools InteractionSet IRanges KernSmooth mgcv pheatmap rhdf5 S4Vectors]; }; - HiContacts = derive2 { name="HiContacts"; version="1.2.0"; sha256="1ir8mympyflg5q6wkdp1hps5sbqby7dgbvg20sv06rzr3l9d6h75"; depends=[BiocGenerics BiocIO BiocParallel dplyr GenomeInfoDb GenomicRanges ggplot2 ggrastr HiCExperiment InteractionSet IRanges Matrix readr RSpectra S4Vectors scales stringr SummarizedExperiment tibble tidyr]; }; - HiCool = derive2 { name="HiCool"; version="1.0.0"; sha256="10r2ppibb5w6h0abyjdlwasd589jr8gmrf6d5xh86sjmfaf5jkfl"; depends=[basilisk BiocIO dplyr GenomicRanges HiCExperiment InteractionSet IRanges plotly reticulate rmarkdown rmdformats S4Vectors sessioninfo stringr vroom]; }; - HiLDA = derive2 { name="HiLDA"; version="1.14.0"; sha256="0igpp4l7dad92a73l8ih17fwi4j9abxlb2q335a4wz40lgzqkz6j"; depends=[abind BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg19 cowplot forcats GenomicFeatures GenomicRanges ggplot2 R2jags Rcpp S4Vectors stringr tidyr TxDb_Hsapiens_UCSC_hg19_knownGene XVector]; }; - HiTC = derive2 { name="HiTC"; version="1.44.0"; sha256="00csfr3yhbllwc8797xg49qb0djpvbpfi6mbnps284nlqy5vpdwh"; depends=[Biostrings GenomeInfoDb GenomicRanges IRanges Matrix RColorBrewer rtracklayer]; }; - HilbertCurve = derive2 { name="HilbertCurve"; version="1.30.0"; sha256="160n5lrghqhsm69qhgbhi1g018i6f7wqr1rp9mlvy4mqndzygdnp"; depends=[circlize GenomicRanges HilbertVis IRanges png polylabelr]; }; - HilbertVis = derive2 { name="HilbertVis"; version="1.58.0"; sha256="12gzfnkkxhw9nyha70ghh8vqp7283grif0aahw3413xzppb2v3bh"; depends=[lattice]; }; - HilbertVisGUI = derive2 { name="HilbertVisGUI"; version="1.58.0"; sha256="166vk1pysxldkqwpi76x5vppw09d75kdqclkizpnx149wf5lxx2f"; depends=[HilbertVis]; }; - HubPub = derive2 { name="HubPub"; version="1.8.1"; sha256="07dz4a40g5dfvys3vrw9fk0b6knypg0gqgari7bgvqnghx500vvb"; depends=[available aws_s3 BiocManager biocthis dplyr fs usethis]; }; - HumanTranscriptomeCompendium = derive2 { name="HumanTranscriptomeCompendium"; version="1.16.3"; sha256="0fiw4r4dix4683w61292micdgp65i90s4hxfx69zm667zjk0b5r8"; depends=[BiocManager S4Vectors shiny ssrch SummarizedExperiment]; }; - HybridMTest = derive2 { name="HybridMTest"; version="1.44.0"; sha256="19pycad35hc7ylnsz75bv029y1r6j9xvrbhzk4i64i7jn8gi7ngh"; depends=[Biobase fdrtool MASS survival]; }; - IFAA = derive2 { name="IFAA"; version="1.2.0"; sha256="1bvx78akdyr4wcghjq2j035bzir6aas6wydmmbpv72whpcvpqpdk"; depends=[DescTools doParallel doRNG foreach glmnet HDCI mathjaxr Matrix MatrixExtra parallelly S4Vectors stringr SummarizedExperiment]; }; - IHW = derive2 { name="IHW"; version="1.28.0"; sha256="0i4yahgkrg9rnc0xldm026k6bd1bn5nkgkaf6kpyyday41rxzyq8"; depends=[BiocGenerics fdrtool lpsymphony slam]; }; - ILoReg = derive2 { name="ILoReg"; version="1.10.0"; sha256="10j148p28mnvgqdvsi6mwx37j25hb4hgh0206jfq8pfwd1arz8ai"; depends=[aricode cluster cowplot dendextend DescTools doRNG doSNOW dplyr fastcluster foreach ggplot2 LiblineaR Matrix parallelDist pheatmap plyr reshape2 RSpectra Rtsne S4Vectors scales SingleCellExperiment SparseM SummarizedExperiment umap]; }; - IMAS = derive2 { name="IMAS"; version="1.24.0"; sha256="0iy4jqnvcngc516gj7890df8vnk0ydcphx2qhafa2s1lgisa1yb4"; depends=[AnnotationDbi BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfortify ggplot2 gridExtra IRanges IVAS lattice lme4 Matrix Rsamtools S4Vectors survival]; }; - IMMAN = derive2 { name="IMMAN"; version="1.20.0"; sha256="01pz23ppy8bs20hzf819lmyy7g354n87rl0b3hasr8lvavvhfvd6"; depends=[Biostrings igraph seqinr STRINGdb]; }; - IMPCdata = derive2 { name="IMPCdata"; version="1.36.0"; sha256="1zv0b83rmdmzbbv43c87f9mpjgk94fr95zsnpvxx20pg9b5bgh2k"; depends=[rjson]; }; - INDEED = derive2 { name="INDEED"; version="2.14.0"; sha256="1ffmmgi3lw7xqzzqsml85jpl9gr91s96s8n3c4d96c3b8d80lrcp"; depends=[devtools glasso igraph visNetwork]; }; - INPower = derive2 { name="INPower"; version="1.36.0"; sha256="0d1ajnhc9hcvdsnd2v9mnnbfh9c8xpyn5z52yzcjgmk4wsp514nc"; depends=[mvtnorm]; }; - INSPEcT = derive2 { name="INSPEcT"; version="1.30.0"; sha256="1nyfl78fjj956bk1xf32k3jdqhlffx6grbl7vajn48q5ldsx8kcx"; depends=[Biobase BiocGenerics BiocParallel DESeq2 deSolve gdata GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges KernSmooth plgem pROC rootSolve Rsamtools rtracklayer S4Vectors shiny SummarizedExperiment TxDb_Mmusculus_UCSC_mm9_knownGene]; }; - INTACT = derive2 { name="INTACT"; version="1.0.2"; sha256="1vk8zdmy5h6yykpxr1jgqfzinmlcyc9nz1pmpvj6a32kcp3gj0xa"; depends=[bdsmatrix numDeriv SQUAREM]; }; - IONiseR = derive2 { name="IONiseR"; version="2.24.0"; sha256="1yrsd5n9zam6wslc6savfn122v3wzzcc46w20mb849qq2np4frf0"; depends=[BiocGenerics BiocParallel Biostrings bit64 dplyr ggplot2 magrittr rhdf5 ShortRead stringr tibble tidyr XVector]; }; - IPO = derive2 { name="IPO"; version="1.26.0"; sha256="0sqr2yzm39arfjc4vgv5w1hqc952920gir24dxl9cz3xjblqxbk6"; depends=[BiocParallel CAMERA rsm xcms]; }; - IRISFGM = derive2 { name="IRISFGM"; version="1.8.0"; sha256="1n13rsbg5y0xnr6in18silifx8jhqzjj1vb5kpjgy5ml55im1s5r"; depends=[AdaptGauss AnnotationDbi anocva clusterProfiler colorspace DEsingle DrImpute ggplot2 ggpubr ggraph igraph knitr Matrix MCL mixtools org_Hs_eg_db org_Mm_eg_db pheatmap Polychrome RColorBrewer Rcpp scater scran Seurat SingleCellExperiment]; }; - IRanges = derive2 { name="IRanges"; version="2.34.1"; sha256="013a3vcw1v5vn0sg2d9cwrdksch48kilvxp8cr79y0nr4vk58q9z"; depends=[BiocGenerics S4Vectors]; }; - ISAnalytics = derive2 { name="ISAnalytics"; version="1.10.2"; sha256="0ckwvn2ljx0crfkqj15x2mzihasa9w0xxldxg5782w354dknbzs4"; depends=[bslib datamods dplyr DT forcats fs ggplot2 ggrepel glue lifecycle lubridate purrr readr readxl rlang shiny shinyWidgets stringr tibble tidyr]; }; - ISLET = derive2 { name="ISLET"; version="1.2.0"; sha256="18xqib6i0ys59g68lfm5h83iihhhj335pwdnm42q9wl5r81jfbij"; depends=[BiocGenerics BiocParallel Matrix SummarizedExperiment]; }; - ISoLDE = derive2 { name="ISoLDE"; version="1.28.0"; sha256="1wzgffsxmicqc6dd1a3j2r2r0qgrjl9m34lw3anhks61r6ipfl0s"; depends=[]; }; - ITALICS = derive2 { name="ITALICS"; version="2.60.0"; sha256="09yia158mrv9r32iw88jlbfd6l7hzmglv8ni7i28x18qvnhp2a08"; depends=[affxparser DBI GLAD ITALICSData oligo oligoClasses pd_mapping50k_xba240]; }; - IVAS = derive2 { name="IVAS"; version="2.20.0"; sha256="1znbvbk3svpawjhxiy0ib6hg8kzm838nh7j70ddzwx5zaav50swy"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges ggfortify ggplot2 IRanges lme4 Matrix S4Vectors]; }; - IWTomics = derive2 { name="IWTomics"; version="1.24.0"; sha256="0wdai6j9j8vkd5nj71x1g3d2nqzs5xbap8z1qq5diq1sl9q7dvdf"; depends=[fda GenomicRanges gtable IRanges KernSmooth S4Vectors]; }; - Icens = derive2 { name="Icens"; version="1.72.0"; sha256="1aq4iwk1cp96jzldhx7d4q7i77zbdg8nzkzh12g29yhwzj39nl3q"; depends=[survival]; }; - IdeoViz = derive2 { name="IdeoViz"; version="1.36.0"; sha256="1za1cxf734mar9hbvqrijdg61g0jag9jdzmi8p8ka62xbikxqa3s"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges RColorBrewer rtracklayer]; }; - IgGeneUsage = derive2 { name="IgGeneUsage"; version="1.14.0"; sha256="0z3ik9fqjs6nqk58dbm70ksakcg321l8xmyf44qhchs7ciqip0lw"; depends=[BH Rcpp RcppEigen RcppParallel reshape2 rstan rstantools StanHeaders SummarizedExperiment]; }; - ImmuneSpaceR = derive2 { name="ImmuneSpaceR"; version="1.28.0"; sha256="0l4l55yrw21z4r6sczib63amd2ai1x34hyhvf7wqpr4m4j4r4zwa"; depends=[Biobase curl data_table digest flowCore flowWorkspace ggplot2 gplots heatmaply httr jsonlite pheatmap plotly preprocessCore R6 Rlabkey rmarkdown scales]; }; - InPAS = derive2 { name="InPAS"; version="2.8.0"; sha256="1i0d49yvm2cq28mjrqy370bk9kd421x40iyz20ghmkjvr8h8fdlq"; depends=[AnnotationDbi batchtools Biobase Biostrings BSgenome cleanUpdTSeq depmixS4 dplyr flock future future_apply GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges limma magrittr parallelly plyranges preprocessCore readr reshape2 RSQLite S4Vectors]; }; - InTAD = derive2 { name="InTAD"; version="1.20.0"; sha256="0ghn58f6xzad12ap1k2l9l2f9y30rv6svg51fy9kjsl53bvfighg"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggpubr IRanges mclust MultiAssayExperiment qvalue rtracklayer S4Vectors SummarizedExperiment]; }; - Informeasure = derive2 { name="Informeasure"; version="1.10.0"; sha256="08pyh4b5xiib1z91nj50ybrybyidkpv1lsp8lzf2vic4pm5g8zs6"; depends=[entropy]; }; - IntEREst = derive2 { name="IntEREst"; version="1.24.0"; sha256="1f67i9q92qn61f0w0cz8ilq7n6xjnk4rspnr916zk7k04rgdz0s9"; depends=[BiocGenerics BiocParallel Biostrings DBI DESeq2 DEXSeq edgeR GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges IRanges RMySQL Rsamtools S4Vectors seqinr seqLogo SummarizedExperiment]; }; - IntOMICS = derive2 { name="IntOMICS"; version="1.0.0"; sha256="107xvvs79fmm6d45gydnd7c3nlzw99sry9h6c6al0wb0b2h1219p"; depends=[bestNormalize bnlearn bnstruct cowplot ggplot2 ggraph gplots igraph matrixStats numbers RColorBrewer rlang SummarizedExperiment]; }; - InterCellar = derive2 { name="InterCellar"; version="2.6.0"; sha256="1m2vjdzqc1xjvcaa1khlhsrsdiz6nlvwmwvby6dh7jp8p8cz37b8"; depends=[biomaRt circlize colorspace colourpicker ComplexHeatmap config data_table dendextend dplyr DT factoextra fmsb fs ggplot2 golem htmltools htmlwidgets igraph plotly plyr readxl rlang scales shiny shinyalert shinycssloaders shinydashboard shinyFeedback shinyFiles signal tibble tidyr umap visNetwork wordcloud2]; }; - InterMineR = derive2 { name="InterMineR"; version="1.22.0"; sha256="0x6lqzczsh2rj9ymbr94b5ik82vj99xhq4x1jjhs2l84i5bzkxi4"; depends=[Biostrings GenomicRanges httr igraph IRanges RCurl RJSONIO S4Vectors sqldf SummarizedExperiment XML xml2]; }; - InteractionSet = derive2 { name="InteractionSet"; version="1.28.1"; sha256="1vs3mqf3x8zk7p83jkv41kag1bmn5zxrr3j1ldqk6wxsl77h55c5"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix Rcpp S4Vectors SummarizedExperiment]; }; - InteractiveComplexHeatmap = derive2 { name="InteractiveComplexHeatmap"; version="1.8.0"; sha256="13qyzfkcjnarbjwr8v74w3a5nzrfnk46w58sa0rmjbydkjy9ry65"; depends=[clisymbols ComplexHeatmap digest fontawesome GetoptLong htmltools IRanges jsonlite kableExtra RColorBrewer S4Vectors shiny svglite]; }; - IntramiRExploreR = derive2 { name="IntramiRExploreR"; version="1.22.0"; sha256="0gw246klhnvnpzvyzjvcgki5k3mbcqagw5qfpk3139ldyi5jdc6q"; depends=[FGNet igraph knitr]; }; - IsoCorrectoR = derive2 { name="IsoCorrectoR"; version="1.18.0"; sha256="163jwm2x8b1kwhm03vi1xbpkqgsr0llyqzvv8nq48cjza14wxnz0"; depends=[dplyr magrittr pracma quadprog readr readxl stringr tibble WriteXLS]; }; - IsoCorrectoRGUI = derive2 { name="IsoCorrectoRGUI"; version="1.16.0"; sha256="1c7dbxb748kkq8llijrikc403f0y6x6r5ma62067k48lbmal3cw1"; depends=[IsoCorrectoR readxl tcltk2]; }; - IsoformSwitchAnalyzeR = derive2 { name="IsoformSwitchAnalyzeR"; version="2.0.1"; sha256="1zjwhxlayz2sb77vspw280didhawj282i5gvxnydcdparg165zwf"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome DBI DEXSeq dplyr edgeR futile_logger GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges limma magrittr pfamAnalyzeR plyr RColorBrewer RCurl readr reshape2 rtracklayer S4Vectors satuRn stringr SummarizedExperiment sva tibble tidyr tximeta tximport VennDiagram XVector]; }; - KBoost = derive2 { name="KBoost"; version="1.8.0"; sha256="1gisi1s2q1qjr8lfbkpa717s8x8idssdv12nic5h2r82v1pdhmzd"; depends=[]; }; - KCsmart = derive2 { name="KCsmart"; version="2.58.0"; sha256="0sv7q7fx7wwin1hcba4izb75vrc2n02ig0rq17zdb8x8z14wbndb"; depends=[BiocGenerics KernSmooth multtest siggenes]; }; - KEGGREST = derive2 { name="KEGGREST"; version="1.40.1"; sha256="13pbw5nlkjwplliv2pdwazv2idfjklvw0ykx5ja8rchvzs5f1vk4"; depends=[Biostrings httr png]; }; - KEGGgraph = derive2 { name="KEGGgraph"; version="1.60.0"; sha256="0bgigkmnz5zvsygcifk2fc7i8rahmqr4brk65qa3104clqqvdfkl"; depends=[graph RCurl Rgraphviz XML]; }; - KEGGlincs = derive2 { name="KEGGlincs"; version="1.26.0"; sha256="0s8d2sw54k4m5s1yi7mijbc3hh7wayi5npgh8z7xiqj49mzali01"; depends=[AnnotationDbi gtools hgu133a_db httr igraph KEGGgraph KEGGREST KOdata org_Hs_eg_db plyr RJSONIO XML]; }; - KinSwingR = derive2 { name="KinSwingR"; version="1.18.0"; sha256="0ibwcdx2h6y80fhf5ln7rw6b9gfcpkr09vdypcnlfvz4nzr3x9k8"; depends=[BiocParallel data_table sqldf]; }; - KnowSeq = derive2 { name="KnowSeq"; version="1.14.1"; sha256="0q5khlzqrhb2fr4ag45kgfp2b6zm9b3cppf47r5bfbwffka4fzlv"; depends=[caret class cqn e1071 edgeR ggplot2 gridExtra Hmisc httr jsonlite kernlab limma praznik R_utils randomForest reshape2 rlist rmarkdown stringr sva XML]; }; - LACE = derive2 { name="LACE"; version="2.4.0"; sha256="0n8x3wsvrap311qpm8zznxnzvhdm9wfbgrahv8ip56sb1bv90p0g"; depends=[biomaRt bsplus callr configr curl data_table data_tree doParallel dplyr DT forcats foreach fs ggplot2 htmltools htmlwidgets igraph jsonlite logr Matrix purrr RColorBrewer readr Rfast shiny shinyBS shinydashboard shinyFiles shinyjs shinythemes shinyvalidate sortable stringi stringr SummarizedExperiment svglite tidyr]; }; - LBE = derive2 { name="LBE"; version="1.68.0"; sha256="1lch5irq51pvcxkj9jy71gwvhhhm5s1k3rr3p7v4vjd78wpjlrxb"; depends=[]; }; - LEA = derive2 { name="LEA"; version="3.12.2"; sha256="1kxrrl8pxhaipmzsw8gs4gs8g8xbp8169z9f7bcpgrfapnawafm9"; depends=[]; }; - LOBSTAHS = derive2 { name="LOBSTAHS"; version="1.26.0"; sha256="1r5ah77qaf0pbdc2w5c3iyrn7k9b3kbp22aqdvmi7dmrr4nbhv3d"; depends=[CAMERA xcms]; }; - LOLA = derive2 { name="LOLA"; version="1.30.0"; sha256="1dq1xq6600smdv8g6kird70x5f7gilqa8rfky5dd6pja4znyfwij"; depends=[BiocGenerics data_table GenomicRanges IRanges reshape2 S4Vectors]; }; - LPE = derive2 { name="LPE"; version="1.74.0"; sha256="0rsncp1sjv36248f720jj96kdd9k4xxvgnkkvw3h21k7cqnjbd2w"; depends=[]; }; - LPEadj = derive2 { name="LPEadj"; version="1.60.0"; sha256="1gfnpwvlmdqikng4dr10d8xkaamnvin3ry7kmal8q85dmz3j66dn"; depends=[LPE]; }; - LRBaseDbi = derive2 { name="LRBaseDbi"; version="2.10.0"; sha256="1f0mx2cdwbna8m5m1aaid92wmw6c1dapyq8f58rzy1xknyshh0sa"; depends=[AnnotationDbi Biobase DBI RSQLite]; }; - LRcell = derive2 { name="LRcell"; version="1.8.0"; sha256="06d02m3v2zpbvcyp0wbjlzlb0alllksjj84qwk5331ag00vf2mvb"; depends=[AnnotationHub BiocParallel dplyr ExperimentHub ggplot2 ggrepel magrittr]; }; - LedPred = derive2 { name="LedPred"; version="1.34.0"; sha256="1nxy4bqp2kv0cqhdzk9hd1lliqarhw991wnrzajd37zn7g7ahch7"; depends=[akima e1071 ggplot2 irr jsonlite plot3D plyr RCurl ROCR testthat]; }; - LinTInd = derive2 { name="LinTInd"; version="1.4.0"; sha256="1aslm76g5wxi0a3nzb0nynh9gjzar8q1vk6i1c5xr8dwprjwh0k4"; depends=[ape BiocGenerics Biostrings cowplot data_tree dplyr ggnewscale ggplot2 ggtree IRanges networkD3 pheatmap purrr reshape2 rlist S4Vectors stringdist stringr]; }; - LineagePulse = derive2 { name="LineagePulse"; version="1.20.0"; sha256="0m5blqh9c9rbs619gkvj8vs43iqb148d4mmgx3d0qgkmi9harq1d"; depends=[BiocParallel circlize ComplexHeatmap ggplot2 gplots knitr Matrix RColorBrewer SingleCellExperiment SummarizedExperiment]; }; - LinkHD = derive2 { name="LinkHD"; version="1.14.0"; sha256="06ddd601yv97f78a5vp6a583q22i77qdkrlwyqizj3dr9h9y5a0w"; depends=[cluster data_table emmeans ggplot2 ggpubr gridExtra MultiAssayExperiment reshape2 rio scales vegan]; }; - Linnorm = derive2 { name="Linnorm"; version="2.24.1"; sha256="1sqkmjah2lxahnvwv04a970za2b8kzvmxnb41k9xrnvj0akigc2d"; depends=[amap apcluster ellipse fastcluster fpc ggdendro ggplot2 gmodels igraph limma MASS mclust Rcpp RcppArmadillo Rtsne statmod vegan zoo]; }; - LiquidAssociation = derive2 { name="LiquidAssociation"; version="1.54.0"; sha256="19sl0rqk97gij1v6zxcyznxyqjlxngi5v9199mf39w1nf9hqwfw0"; depends=[Biobase geepack org_Sc_sgd_db yeastCC]; }; - LoomExperiment = derive2 { name="LoomExperiment"; version="1.18.0"; sha256="09ia6nx9rsw3q3rrxv1kyddik1cgbqhdv5b5658q09qwhr6hhv4i"; depends=[BiocIO DelayedArray GenomicRanges HDF5Array Matrix rhdf5 S4Vectors SingleCellExperiment stringr SummarizedExperiment]; }; - LymphoSeq = derive2 { name="LymphoSeq"; version="1.28.0"; sha256="0c14zz4sarpmmd75950rj9xc1x29l6ylk4n4wvbq8rj0qji3yfxi"; depends=[Biostrings circlize data_table dplyr ggplot2 ggtree ineq LymphoSeqDB msa phangorn plyr RColorBrewer reshape stringdist UpSetR VennDiagram]; }; - M3C = derive2 { name="M3C"; version="1.22.0"; sha256="158brq3w5h735s9yq93xx0y4p79yhgz72rpy0cyk4fjia5yaij5c"; depends=[cluster corpcor doParallel doSNOW foreach ggplot2 Matrix matrixcalc Rtsne umap]; }; - M3Drop = derive2 { name="M3Drop"; version="1.26.0"; sha256="1gambclnknxan7m27dg646s31jq4m4x1hn98mi0cfr97r89nb5p3"; depends=[bbmle gplots Hmisc irlba Matrix matrixStats numDeriv RColorBrewer reldist statmod]; }; - MACSQuantifyR = derive2 { name="MACSQuantifyR"; version="1.14.0"; sha256="1nf9qbl1ffra9qx230sx39c2b657z7v2rxvi8aclvvm56ki8msnk"; depends=[ggplot2 ggrepel gridExtra lattice latticeExtra png prettydoc readxl rmarkdown rvest xml2]; }; - MACSr = derive2 { name="MACSr"; version="1.8.0"; sha256="1yxjqcl6zln5zcx701s5jyg8q22cwx9g5hhxhfb1g25fayqdmdrr"; depends=[AnnotationHub basilisk ExperimentHub reticulate S4Vectors]; }; - MADSEQ = derive2 { name="MADSEQ"; version="1.26.0"; sha256="1i9lqgz3is59wcalbljqdq2h2bwq7x047l330z0hlhwc7b9xyfln"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 coda GenomeInfoDb GenomicAlignments GenomicRanges IRanges preprocessCore rjags Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation vcfR VGAM zlibbioc]; }; - MAGAR = derive2 { name="MAGAR"; version="1.8.0"; sha256="1msdlp1sf7ndiwscbbnc9mxmyp98f2kbgk35r6dajznfpjr1dx3y"; depends=[argparse bigstatsr crlmm data_table doParallel ff HDF5Array igraph impute jsonlite plyr reshape2 rjson RnBeads RnBeads_hg19 snpStats UpSetR]; }; - MAGeCKFlute = derive2 { name="MAGeCKFlute"; version="2.4.0"; sha256="1r822baiammialcwkyj7lh6gc506lq47cbbavdv8pkc7mkzkazlv"; depends=[Biobase clusterProfiler depmap DOSE enrichplot ggplot2 ggrepel gridExtra msigdbr pathview reshape2]; }; - MAI = derive2 { name="MAI"; version="1.6.0"; sha256="0g4zgdxsapjd49rlz3nh5cq7s5g7q2iz61mbp5s2817lqws7vl6j"; depends=[caret doParallel e1071 foreach future future_apply missForest pcaMethods S4Vectors SummarizedExperiment tidyverse]; }; - MAIT = derive2 { name="MAIT"; version="1.34.0"; sha256="09aggjr4qhf4qvh96frmkx7zfbbdpc3d8j32jkzjpdq4h2llp468"; depends=[agricolae CAMERA caret class e1071 gplots MASS pls plsgenomics Rcpp xcms]; }; - MANOR = derive2 { name="MANOR"; version="1.72.0"; sha256="0ili9xy7vvw17mz44lxadv1vkf3ahpks2l34qa9yfccpalwhzriw"; depends=[GLAD]; }; - MAST = derive2 { name="MAST"; version="1.26.0"; sha256="0vm7v2anbrci6mcans9y9svd6xjm4waf2kny3rz0cjgsasw60ycx"; depends=[abind Biobase BiocGenerics data_table ggplot2 Matrix plyr progress reshape2 S4Vectors SingleCellExperiment stringr SummarizedExperiment]; }; - MBASED = derive2 { name="MBASED"; version="1.34.0"; sha256="1h2dc1phwq551fd1kspprbsg8xl2n92aj7yna4161wdsv3ry8zi4"; depends=[BiocGenerics BiocParallel GenomicRanges RUnit SummarizedExperiment]; }; - MBAmethyl = derive2 { name="MBAmethyl"; version="1.34.0"; sha256="1nrwf8g90bifdr0nysfl4n4jsxxndf2y7bn1w5x9xf53qc7awdr8"; depends=[]; }; - MBCB = derive2 { name="MBCB"; version="1.54.0"; sha256="03mrmcklcpzms05f6yzs13hdnfn2pzywwh6xf39zjfzgv6p5mcmd"; depends=[preprocessCore tcltk2]; }; - MBECS = derive2 { name="MBECS"; version="1.4.0"; sha256="0gfr3c5k7xjd342zfdksgh22mrk3ryr4cp89nar0mlpgzxg4l4vz"; depends=[cluster dplyr ggplot2 gridExtra limma lme4 lmerTest magrittr Matrix pheatmap phyloseq rmarkdown ruv sva tibble tidyr vegan]; }; - MBQN = derive2 { name="MBQN"; version="2.12.0"; sha256="1yzm3xbp7biv1gdh9d61az2jyp1gh5xc937r0brdjyi117q28ba8"; depends=[BiocFileCache ggplot2 limma PairedData preprocessCore rappdirs RCurl rmarkdown SummarizedExperiment xml2]; }; - MBttest = derive2 { name="MBttest"; version="1.28.0"; sha256="11vacn77p96yvw1lm8r3afhlj1kg3qki7d26m5hap67740iwz4k3"; depends=[gplots gtools]; }; - MCbiclust = derive2 { name="MCbiclust"; version="1.24.0"; sha256="0rddn3dpyyb70320vbi45s1bj7zsxbfz1xk8l0r8l8fxifyw5n5i"; depends=[AnnotationDbi BiocParallel cluster GGally ggplot2 GO_db org_Hs_eg_db scales WGCNA]; }; - MDTS = derive2 { name="MDTS"; version="1.20.0"; sha256="1fdhwlrrwmkhzmy4rf5hwjzz4i7igr5mdrifyjz8v7di8mhl425s"; depends=[Biostrings DNAcopy GenomicAlignments GenomicRanges IRanges Rsamtools stringr]; }; - MEAL = derive2 { name="MEAL"; version="1.30.0"; sha256="03xk4nw384b6vkb827w9yv61lx71lqba3lzg061zymakwr708gsa"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 Gviz IRanges isva limma matrixStats minfi missMethyl MultiDataSet permute S4Vectors SmartSVA SummarizedExperiment vegan]; }; - MEAT = derive2 { name="MEAT"; version="1.12.0"; sha256="0jf25s8fh7k6kgk2mpwr9gj8nmnx96qns0dchmmmyd0y3b1vicvj"; depends=[dplyr dynamicTreeCut glmnet impute minfi RPMM stringr SummarizedExperiment tibble wateRmelon]; }; - MEB = derive2 { name="MEB"; version="1.14.0"; sha256="02xva4msagm7kqhy4iq13n3p03qgn7906skgiy298mjz0qg4dvih"; depends=[e1071 edgeR scater SingleCellExperiment SummarizedExperiment wrswoR]; }; - MEDIPS = derive2 { name="MEDIPS"; version="1.52.0"; sha256="1wl1jmfsq7mz9m98lj7lsss5bj4iyi7y1rxpmv7fldb62mj3dv47"; depends=[biomaRt Biostrings BSgenome DNAcopy edgeR GenomicRanges gtools IRanges preprocessCore Rsamtools rtracklayer]; }; - MEDME = derive2 { name="MEDME"; version="1.60.0"; sha256="0ypqdqkabzl5n2lxbvkk3ch8cgms1538dqglmr1jy7k1bx5gck3d"; depends=[Biostrings drc MASS]; }; - MEIGOR = derive2 { name="MEIGOR"; version="1.33.0"; sha256="1lc7ahwbfgnw8h00wv3n4wx6xrvdbh2f2d2s8c5aamqkap48fjgn"; depends=[CNORode deSolve Rsolnp snowfall]; }; - MGFM = derive2 { name="MGFM"; version="1.34.0"; sha256="19dkw1r8jbfk7ycsm81svi3knnqk664bzvdbicwvl34c96kfqjln"; depends=[annotate AnnotationDbi]; }; - MGFR = derive2 { name="MGFR"; version="1.26.0"; sha256="0pnzkqqahw2hjnvm36937zhr0575ajvq6dil240d2ybvd45cbrfl"; depends=[annotate biomaRt]; }; - MIMOSA = derive2 { name="MIMOSA"; version="1.37.0"; sha256="0dpz0r1kswdb4wzkpj5798gs627vzvvbwbkild2fc1gvmh9p8lwc"; depends=[Biobase coda data_table dplyr Formula ggplot2 MASS MCMCpack modeest plyr pracma Rcpp RcppArmadillo reshape rlang scales testthat tidyr]; }; - MIRA = derive2 { name="MIRA"; version="1.22.0"; sha256="0xc0y3iismkrmag1qd2wny4rfgywly0zv55bkrzl35szymmy0blh"; depends=[Biobase BiocGenerics bsseq data_table GenomicRanges ggplot2 IRanges S4Vectors]; }; - MLInterfaces = derive2 { name="MLInterfaces"; version="1.80.0"; sha256="1s5b27n01crfzrpshhiv6g0q0qf0dip1gw4nkrkg5sh5x9dsikq6"; depends=[annotate Biobase BiocGenerics cluster fpc gbm gdata genefilter ggvis hwriter magrittr MASS mlbench pls RColorBrewer Rcpp rpart sfsmisc shiny SummarizedExperiment threejs]; }; - MLP = derive2 { name="MLP"; version="1.48.0"; sha256="1dykg6ywy7saffpn0nx2x2blf6m79xqghyzk7h9xhm74n5idy8vs"; depends=[AnnotationDbi gplots]; }; - MLSeq = derive2 { name="MLSeq"; version="2.18.0"; sha256="0x08qn8wd6qdb4nway86ir4xyi3p977jziz57v64m3qbw4iqynn3"; depends=[Biobase caret DESeq2 edgeR foreach ggplot2 limma pamr plyr sSeq SummarizedExperiment testthat VennDiagram xtable]; }; - MMAPPR2 = derive2 { name="MMAPPR2"; version="1.14.0"; sha256="14m41hi79f7m2qigjjcgy08awrf0654ridgm6wxcq8cmmlm68g8a"; depends=[Biobase BiocGenerics BiocParallel data_table dplyr ensemblVEP GenomeInfoDb GenomicRanges gmapR IRanges magrittr Rsamtools S4Vectors stringr tidyr VariantAnnotation VariantTools]; }; - MMDiff2 = derive2 { name="MMDiff2"; version="1.28.0"; sha256="10qqn2qlzbkcngay5l5bm5anw8c2qrx1w2jcfc235m950clr9w4p"; depends=[Biobase Biostrings BSgenome GenomicRanges ggplot2 locfit RColorBrewer Rsamtools S4Vectors shiny]; }; - MMUPHin = derive2 { name="MMUPHin"; version="1.14.0"; sha256="14cn1mg9ffhzy1vgschl2h0wzah3c1g67q367f2m050a3z2i2ndy"; depends=[cowplot dplyr fpc ggplot2 igraph Maaslin2 metafor stringr tidyr]; }; - MODA = derive2 { name="MODA"; version="1.26.0"; sha256="0rghvpp5yflpdfbxz7j7y2513s290kkpak9zn8y1lah8qh08yiby"; depends=[AMOUNTAIN cluster dynamicTreeCut igraph RColorBrewer WGCNA]; }; - MOFA2 = derive2 { name="MOFA2"; version="1.10.0"; sha256="044z76ll56028wwd6672pbjimbwka6sf74dyjsdz1al4pp9g4f1p"; depends=[basilisk corrplot cowplot DelayedArray dplyr forcats ggplot2 ggrepel HDF5Array magrittr pheatmap RColorBrewer reshape2 reticulate rhdf5 Rtsne stringi tidyr uwot]; }; - MOGAMUN = derive2 { name="MOGAMUN"; version="1.10.0"; sha256="1q8c1l73nshv13806a8c302pjq96kz4x14klxzf9kch7f86zm6sw"; depends=[BiocParallel igraph RCy3 RUnit stringr]; }; - MOMA = derive2 { name="MOMA"; version="1.12.0"; sha256="1vz2i3rm0cxswbablack9fb83j92d9245bmqx042169k68si4m2p"; depends=[circlize cluster ComplexHeatmap dplyr ggplot2 magrittr MKmisc MultiAssayExperiment qvalue RColorBrewer readr reshape2 rlang stringr tibble tidyr]; }; - MOSim = derive2 { name="MOSim"; version="1.14.0"; sha256="1xsgsqjj099vb97bnyac2k9lqzk0ck8khfr6vfb2yn92g9fy0bxv"; depends=[Biobase dplyr ggplot2 HiddenMarkov IRanges lazyeval matrixStats purrr rlang S4Vectors scales stringi stringr tibble tidyr zoo]; }; - MPFE = derive2 { name="MPFE"; version="1.36.0"; sha256="1hjdk7lyrkm4al2j7vjhi3wm8siwpdn0afjz0438d3ijsnxh0c1s"; depends=[]; }; - MPRAnalyze = derive2 { name="MPRAnalyze"; version="1.18.0"; sha256="16magxm14s70yma5ddiiqp43sa3k04bqh062n3z4ni6w64l8l9d3"; depends=[BiocParallel progress SummarizedExperiment]; }; - MQmetrics = derive2 { name="MQmetrics"; version="1.8.0"; sha256="17k0g2saxkvrr4z660hyk2nplnr1ylyx8a5gljbfhpqn4gfp1795"; depends=[cowplot dplyr ggforce gghalves ggplot2 ggpubr ggrepel gridExtra gtable knitr magrittr plyr purrr RColorBrewer readr reshape2 rlang rmarkdown scales stringr tidyr]; }; - MSA2dist = derive2 { name="MSA2dist"; version="1.4.0"; sha256="1n6spzglr9hfisn5g585hvia9nasrlb9fdqfm7lrjb8p75kz3fdj"; depends=[ape Biostrings doParallel dplyr foreach GenomicRanges IRanges Rcpp RcppThread rlang seqinr stringi stringr tibble tidyr]; }; - MSPrep = derive2 { name="MSPrep"; version="1.10.0"; sha256="0ilwfdj1a34zhr2c8bdn46r1pnd3q63dg7cm8196vixbmkbpjdlq"; depends=[crmn dplyr magrittr missForest pcaMethods preprocessCore rlang S4Vectors stringr SummarizedExperiment sva tibble tidyr VIM]; }; - MSnID = derive2 { name="MSnID"; version="1.34.0"; sha256="1mxlr76xrgp3limhr20naanhqr6b0d2wbk9l63j0pi2yckszxjjc"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics BiocStyle Biostrings data_table doParallel dplyr foreach ggplot2 iterators msmsTests MSnbase mzID mzR ProtGenerics purrr R_cache Rcpp reshape2 rlang RUnit stringr tibble xtable]; }; - MSnbase = derive2 { name="MSnbase"; version="2.26.0"; sha256="0qpgpvzg0vw45ia3dpkpfs56dj06crjrrg4i9l46bj8f2pgzcf0g"; depends=[affy Biobase BiocGenerics BiocParallel digest ggplot2 impute IRanges lattice MALDIquant MASS MsCoreUtils mzID mzR pcaMethods plyr ProtGenerics Rcpp S4Vectors scales vsn XML]; }; - MSstats = derive2 { name="MSstats"; version="4.8.7"; sha256="15qvwlxjs0gzkhkj7c9k1j3szlhkfv2f0nm3pcq2k19617y19gbj"; depends=[checkmate data_table ggplot2 ggrepel gplots limma lme4 marray MASS MSstatsConvert preprocessCore Rcpp RcppArmadillo statmod survival]; }; - MSstatsConvert = derive2 { name="MSstatsConvert"; version="1.10.5"; sha256="1as2sfzbhikbkp4r04qldkgsmx4ds43cj5a7kwgkswxb479jf83c"; depends=[checkmate data_table log4r stringi]; }; - MSstatsLOBD = derive2 { name="MSstatsLOBD"; version="1.8.0"; sha256="1ysxz82zkhnkpmphsgd2i4wl0dnckxs5cjj8crxn4wk04lw5llyi"; depends=[ggplot2 minpack_lm Rcpp]; }; - MSstatsLiP = derive2 { name="MSstatsLiP"; version="1.6.0"; sha256="1ikhzvpsrm0qhfma1rm4c2j6ip5qf0mq9mfg96sr07w4vcpay4y7"; depends=[Biostrings checkmate data_table dplyr factoextra ggplot2 ggpubr gridExtra MSstats MSstatsConvert MSstatsPTM purrr Rcpp scales stringr tibble tidyr tidyverse]; }; - MSstatsPTM = derive2 { name="MSstatsPTM"; version="2.2.4"; sha256="04aawpw1jz9rxi2p1ib34fvah2cipc39byggfd4b87cj7gbqjcl0"; depends=[Biostrings checkmate data_table dplyr ggplot2 ggrepel gridExtra MSstats MSstatsConvert MSstatsTMT Rcpp stringi stringr]; }; - MSstatsQC = derive2 { name="MSstatsQC"; version="2.18.0"; sha256="1b5hy55wa34lkj5gr1jvirgjy8nk0ym6rpkvkap51b7z59dfsbn8"; depends=[dplyr ggExtra ggplot2 MSnbase plotly qcmetrics]; }; - MSstatsQCgui = derive2 { name="MSstatsQCgui"; version="1.20.0"; sha256="1jj3ji8k66x3fnvz67b2ssr7jvm1j1plnpircwhk6vska0yy5jdc"; depends=[dplyr ggExtra gridExtra MSstatsQC plotly shiny]; }; - MSstatsSampleSize = derive2 { name="MSstatsSampleSize"; version="1.13.0"; sha256="09gmlqxb65pa4wxh5bryb6lhs68zrfaqfl7n3k9shvzi3iw02vp3"; depends=[BiocParallel caret ggplot2 gridExtra MSstats reshape2]; }; - MSstatsShiny = derive2 { name="MSstatsShiny"; version="1.2.5"; sha256="067nnbdmip7g4vp8jl29k1wjql3misnqjzs3hxva8wsscdvf6hd0"; depends=[data_table dplyr DT ggplot2 ggrepel gplots Hmisc htmltools marray MSstats MSstatsConvert MSstatsPTM MSstatsTMT readxl shiny shinyBS shinybusy shinyjs tidyr uuid]; }; - MSstatsTMT = derive2 { name="MSstatsTMT"; version="2.8.0"; sha256="0n4dc178b1wdb3w0i5hr0zdm6ijcyn7ir8rjaalpz3aq5dkvslc9"; depends=[checkmate data_table ggplot2 limma lme4 lmerTest MSstats MSstatsConvert]; }; - MVCClass = derive2 { name="MVCClass"; version="1.74.0"; sha256="1vrn2c5m4w7g13s1zd1am5b02lp026zg6gvpg8dvsras0j56rhr6"; depends=[]; }; - MWASTools = derive2 { name="MWASTools"; version="1.24.0"; sha256="0klyclh5hiiwc9lc2ra3d2gcdl58jmda0xd9h499gv94mzhb6d50"; depends=[boot car ComplexHeatmap ggplot2 glm2 gridExtra igraph KEGGgraph KEGGREST ppcor qvalue RCurl SummarizedExperiment]; }; - Maaslin2 = derive2 { name="Maaslin2"; version="1.14.1"; sha256="06mb72hbzihdficv73yqbb2m86bkw78w3vbw1rm98n0npxq2fch6"; depends=[biglm car chemometrics cplm data_table dplyr edgeR ggplot2 glmmTMB hash lme4 lmerTest logging MASS metagenomeSeq optparse pbapply pcaPP pheatmap pscl robustbase tibble vegan]; }; - Macarron = derive2 { name="Macarron"; version="1.4.0"; sha256="0b796l9svyvpink4wjhzdm2myq4p010xg4izv3axlv0967pnmd15"; depends=[BiocParallel data_table DelayedArray dynamicTreeCut ff logging Maaslin2 plyr psych RCurl RJSONIO SummarizedExperiment WGCNA xml2]; }; - MantelCorr = derive2 { name="MantelCorr"; version="1.70.0"; sha256="00vy5md147dr16xf072w8pr0h1a9hsr7mx99xwnhc2lr9d79ryyd"; depends=[]; }; - MassArray = derive2 { name="MassArray"; version="1.52.0"; sha256="1vxr84ld8ba8wmk2jyhixs7wy0rzgsa612n4zmxn545r3dyd3159"; depends=[]; }; - MassSpecWavelet = derive2 { name="MassSpecWavelet"; version="1.66.0"; sha256="1nc1imxia71sxxvi77f91yhwxza2l8kk1d7zkp5680xzw6yd6ajr"; depends=[]; }; - MatrixGenerics = derive2 { name="MatrixGenerics"; version="1.12.3"; sha256="07hrafzn3787vprdwdk3cfyhi8df7hjvxg9vq7ad8raqzb37lqil"; depends=[matrixStats]; }; - MatrixQCvis = derive2 { name="MatrixQCvis"; version="1.8.0"; sha256="0dw6m2ncl3ps959qaqxawhgixm0wjljmqysmq3wjf0mhfbp38ck7"; depends=[ComplexHeatmap dplyr ExperimentHub ggplot2 Hmisc htmlwidgets impute imputeLCMD limma MASS pcaMethods plotly proDA rlang rmarkdown Rtsne shiny shinydashboard shinyhelper shinyjs SummarizedExperiment tibble tidyr umap UpSetR vsn]; }; - MatrixRider = derive2 { name="MatrixRider"; version="1.32.0"; sha256="1268s521c0qvlk0zij91p7s3jcpnwibaw6zzdp8rhy62l2kpqdfs"; depends=[Biostrings IRanges S4Vectors TFBSTools XVector]; }; - MeSHDbi = derive2 { name="MeSHDbi"; version="1.36.0"; sha256="1xkbc914vcw0wd8nxvl0ffx9hb1i7la9ah2zw7r920kiqvy37ai9"; depends=[AnnotationDbi Biobase RSQLite]; }; - MeasurementError_cor = derive2 { name="MeasurementError.cor"; version="1.72.0"; sha256="1zs5f8rwh47whal5ia7f8sfhcs8jajrlmwbwvk7nns03a6i6hnvg"; depends=[]; }; - Melissa = derive2 { name="Melissa"; version="1.16.0"; sha256="0396w305mk062kr342qsck2wlcyq69wyy22pl81bi5v36cn2zb17"; depends=[assertthat BiocStyle BPRMeth cowplot data_table doParallel foreach GenomicRanges ggplot2 magrittr matrixcalc mclust MCMCpack mvtnorm ROCR truncnorm]; }; - Mergeomics = derive2 { name="Mergeomics"; version="1.28.0"; sha256="1sl1s8d9y09dngh3z3im2jj3bzlx93p44hq1nzxghqyijfmamj8w"; depends=[]; }; - MesKit = derive2 { name="MesKit"; version="1.10.0"; sha256="063ski3x0nabmz4g8lmcc4hgaqmfa4306z17qrm8bfj30sasz2nc"; depends=[AnnotationDbi ape Biostrings circlize ComplexHeatmap cowplot data_table dplyr ggplot2 ggrepel ggridges IRanges mclust phangorn pracma RColorBrewer S4Vectors tidyr]; }; - MetCirc = derive2 { name="MetCirc"; version="1.30.0"; sha256="06g0w17sv55cc5npyqqifl2qkxh0zfwh03kr8j8gzgy0y38n6bk8"; depends=[amap circlize ggplot2 MsCoreUtils S4Vectors scales shiny Spectra]; }; - MetID = derive2 { name="MetID"; version="1.18.0"; sha256="0cfpymk36798bk8gcv4bs4j1y2q6m0ilrjncqy4106jqdb6kym3z"; depends=[ChemmineR devtools igraph Matrix stringr]; }; - MetNet = derive2 { name="MetNet"; version="1.18.0"; sha256="133iliw01yvgdpdnhblkxyy9508kavbyxm7dm3j8rrcjb0jpa6n1"; depends=[BiocParallel bnlearn corpcor dplyr GeneNet GENIE3 ggplot2 parmigene psych rlang S4Vectors stabs SummarizedExperiment tibble tidyr]; }; - MetaCyto = derive2 { name="MetaCyto"; version="1.22.0"; sha256="0pdhkq7pq6rx2wbnvr0qh1kvk78ja1a3phbv3b1fw5ky226hfcmd"; depends=[cluster fastcluster flowCore FlowSOM ggplot2 metafor tidyr]; }; - MetaNeighbor = derive2 { name="MetaNeighbor"; version="1.20.0"; sha256="151ip70la12kj80c0airi1yyjbj69gnkshd6kfk88wsvq7s179id"; depends=[beanplot dplyr ggplot2 gplots igraph Matrix matrixStats RColorBrewer SingleCellExperiment SummarizedExperiment tibble tidyr]; }; - MetaPhOR = derive2 { name="MetaPhOR"; version="1.2.0"; sha256="1dhldl6vxp12rsbk9sdklb5r8gyi4fybfbfkxs5cb3y1ygq83vcd"; depends=[clusterProfiler ggplot2 ggrepel pheatmap RCy3 RecordLinkage stringr]; }; - MetaVolcanoR = derive2 { name="MetaVolcanoR"; version="1.14.0"; sha256="11fxjv0kb65wc2237rh3340j72v3zsd4s019bi07rbpqnl246pnj"; depends=[cowplot data_table dplyr ggplot2 htmlwidgets metafor metap plotly rlang tidyr topconfects]; }; - Metab = derive2 { name="Metab"; version="1.33.0"; sha256="0fid4b3yk56z2sm6hxfp0z30nqjsky9sv4x49x912bw61amvrwky"; depends=[pander svDialogs xcms]; }; - MetaboAnnotation = derive2 { name="MetaboAnnotation"; version="1.4.3"; sha256="1n82zfkjm06brn8hzydx4q2qwxdaygbc436hjg0bqk0q905d8s4j"; depends=[AnnotationHub BiocGenerics BiocParallel CompoundDb MetaboCoreUtils MsCoreUtils ProtGenerics QFeatures S4Vectors Spectra SummarizedExperiment]; }; - MetaboCoreUtils = derive2 { name="MetaboCoreUtils"; version="1.8.0"; sha256="1qg66w0fxhxfp6yx6jgplj0vd4gvfwa95hr4516cdjzzwcc1xaqb"; depends=[MsCoreUtils]; }; - MetaboSignal = derive2 { name="MetaboSignal"; version="1.30.3"; sha256="1xm3lkjs1i2cwsl60699nnrq50j1dfhc3799v44rr0sjzzhqr87h"; depends=[AnnotationDbi biomaRt EnsDb_Hsapiens_v75 hpar igraph KEGGgraph KEGGREST MWASTools mygene org_Hs_eg_db RCurl]; }; - MethPed = derive2 { name="MethPed"; version="1.28.0"; sha256="1gp1y9h6rkrvj0xbi915lsq5b6gvgyydq8l012pf6nm1dq8xwgzj"; depends=[Biobase randomForest]; }; - MethReg = derive2 { name="MethReg"; version="1.10.2"; sha256="085vd6wymahnvbvj4lj21iq2zpn42jv1w6a46mfa6lhban6s0xx5"; depends=[AnnotationHub DelayedArray dplyr ExperimentHub GenomicRanges ggplot2 ggpubr IRanges MASS Matrix plyr progress pscl readr rlang S4Vectors sesame sesameData sfsmisc stringr SummarizedExperiment tibble tidyr]; }; - MethTargetedNGS = derive2 { name="MethTargetedNGS"; version="1.32.0"; sha256="05yl7z8fx6p2zzr2vkm7dvyxxcvr52w3hxfgs045w1klpsnrvsr3"; depends=[Biostrings gplots seqinr stringr]; }; - MethylAid = derive2 { name="MethylAid"; version="1.34.0"; sha256="1fyw87c87irwslbnbwq890w918axxmi7k20yd10r24aw0mhph56q"; depends=[Biobase BiocGenerics BiocParallel ggplot2 gridBase hexbin matrixStats minfi RColorBrewer shiny SummarizedExperiment]; }; - MethylMix = derive2 { name="MethylMix"; version="2.30.0"; sha256="1qkqvhfy04q24nf5fhjagn7fw69kv0svzlmrm3wwv7i2vwijyg3a"; depends=[data_table digest foreach ggplot2 impute limma R_matlab RColorBrewer RCurl RPMM]; }; - MethylSeekR = derive2 { name="MethylSeekR"; version="1.40.0"; sha256="1bx4jw20nkk59jpic0fz95s9zq44jamjw5ppygp4gmw4b2jfqj5h"; depends=[BSgenome geneplotter GenomicRanges IRanges mhsmm rtracklayer]; }; - Mfuzz = derive2 { name="Mfuzz"; version="2.60.0"; sha256="0rfna5ycwkx4xb2gv1wpfn7f7nz6f79w5nlkb7719l5730d81wnz"; depends=[Biobase e1071 tkWidgets]; }; - MiChip = derive2 { name="MiChip"; version="1.54.0"; sha256="0r3lgl0b2mihkr3bhpijm9qns1ig5s7pbypnwqj5rd6fmf1ksrzf"; depends=[Biobase]; }; - MiPP = derive2 { name="MiPP"; version="1.72.0"; sha256="1ifh4961092zw89rl45iirhrpmz2629avr54lqrkf748ph5icprv"; depends=[Biobase e1071 MASS]; }; - MiRaGE = derive2 { name="MiRaGE"; version="1.42.0"; sha256="0yry5n4gk46f4b7s5zd0nha782h8a72510javbb9law5iahch2ag"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager S4Vectors]; }; - MicrobiomeProfiler = derive2 { name="MicrobiomeProfiler"; version="1.6.1"; sha256="1hp9q3nyza6pvdgr79kp2vc91xmr5qnpx3650gxa2y9c8jkcf5ln"; depends=[clusterProfiler config DT enrichplot ggplot2 golem gson htmltools magrittr shiny shinycustomloader shinyWidgets]; }; - MicrobiotaProcess = derive2 { name="MicrobiotaProcess"; version="1.12.4"; sha256="1yl9vg8j9x66jnkp2s823rpvpn0qrlzmc01fzw9zj5f2kzsw5238"; depends=[ape Biostrings cli coin data_table dplyr dtplyr foreach ggfun ggplot2 ggrepel ggsignif ggstar ggtree ggtreeExtra magrittr MASS patchwork pillar plyr rlang SummarizedExperiment tibble tidyr tidyselect tidytree treeio vegan zoo]; }; - MineICA = derive2 { name="MineICA"; version="1.40.0"; sha256="0vpjf2vjg9hk1j39c5f37m2rvpspwnygs4yax4gp9i3iwvsrsf4a"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt cluster colorspace fastICA foreach fpc ggplot2 GOstats graph gtools Hmisc igraph JADE lumi lumiHumanAll_db marray mclust plyr RColorBrewer Rgraphviz scales xtable]; }; - MinimumDistance = derive2 { name="MinimumDistance"; version="1.44.0"; sha256="1axlwnws57ldlphifd30a9hzxjhsxbjrg5k0h7lxhmrrby1cf62d"; depends=[Biobase BiocGenerics data_table DNAcopy ff foreach GenomeInfoDb GenomicRanges IRanges lattice MatrixGenerics matrixStats oligoClasses S4Vectors SummarizedExperiment VanillaICE]; }; - MobilityTransformR = derive2 { name="MobilityTransformR"; version="1.4.0"; sha256="0dwshk5azfrvajalyjr2l8l8cfls3070p3jqk1s2j6ni85p7qxbb"; depends=[MetaboCoreUtils MSnbase Spectra xcms]; }; - ModCon = derive2 { name="ModCon"; version="1.8.0"; sha256="1vr8v88cgb7c8svghc13b8a4j4gfq77y2p8px7y0bhm3zlx97ay0"; depends=[data_table]; }; - Modstrings = derive2 { name="Modstrings"; version="1.16.0"; sha256="1q0qmcnyblnjkxnis1klgmd2zy226jr9iwwqzvrrbqs1wxpd4ap9"; depends=[BiocGenerics Biostrings crayon GenomicRanges IRanges S4Vectors stringi stringr XVector]; }; - MoleculeExperiment = derive2 { name="MoleculeExperiment"; version="1.0.3"; sha256="01x2wmkpd23fkx021fz96yhq26hhqr3p4f5bsshxmzmhqxcw89l9"; depends=[BiocParallel cli data_table dplyr EBImage ggplot2 magrittr Matrix purrr rhdf5 rjson rlang S4Vectors SpatialExperiment terra]; }; - MoonlightR = derive2 { name="MoonlightR"; version="1.26.1"; sha256="1p9cnq07qmybqz0qqrcka5cvbm9bd68q5k0pn35wkysmk2jakdhq"; depends=[Biobase circlize clusterProfiler doParallel DOSE foreach GEOquery gplots HiveR limma parmigene randomForest RColorBrewer RISmed SummarizedExperiment TCGAbiolinks]; }; - Motif2Site = derive2 { name="Motif2Site"; version="1.4.0"; sha256="1paw91v8f7gf3p18kwjzxjjhqgfsyf3hgw0ppbmmp71ix4jpqirj"; depends=[BiocGenerics Biostrings BSgenome edgeR GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS mixtools S4Vectors]; }; - MotifDb = derive2 { name="MotifDb"; version="1.42.0"; sha256="18d0qj9sn4bhfjy2mwsz2nnm41xlsqjslsv69nkhv19w9zd842pw"; depends=[BiocGenerics Biostrings GenomicRanges IRanges rtracklayer S4Vectors splitstackshape]; }; - MouseFM = derive2 { name="MouseFM"; version="1.10.0"; sha256="1sfigg06lg81gfzi1ima1ixghcbyb0grzdp3k9839w7q5m7mq8zi"; depends=[biomaRt curl data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gtools httr IRanges jsonlite reshape2 rlist scales tidyr]; }; - MsBackendMassbank = derive2 { name="MsBackendMassbank"; version="1.8.0"; sha256="1b1m9f9gvsfsfwh6zpfb353frwn47zn06fm3504b5capczshqbbz"; depends=[BiocParallel DBI IRanges MsCoreUtils ProtGenerics S4Vectors Spectra]; }; - MsBackendMgf = derive2 { name="MsBackendMgf"; version="1.8.0"; sha256="1iz2ipvx6z92b7ndn64w1n4c9170r3z7yqa94bbz7gg9xraw6p6q"; depends=[BiocParallel IRanges MsCoreUtils S4Vectors Spectra]; }; - MsBackendMsp = derive2 { name="MsBackendMsp"; version="1.4.0"; sha256="0k07kmyliada0c8a0wsj8ibra3finvir0m8a007h4qqkvv8hbfla"; depends=[BiocParallel IRanges MsCoreUtils S4Vectors Spectra]; }; - MsBackendRawFileReader = derive2 { name="MsBackendRawFileReader"; version="1.6.0"; sha256="1dl1c954y1q1ij3j1r5zz487yd212bcmv9jdmvnh62yg4dgczvah"; depends=[BiocParallel IRanges MsCoreUtils rawrr S4Vectors Spectra]; }; - MsBackendSql = derive2 { name="MsBackendSql"; version="1.0.1"; sha256="12y5qniw64gdk6rdxw7a2zvdyjsh5vz1kwjmhsjb8jfp7i6x7qhz"; depends=[BiocParallel data_table DBI IRanges MsCoreUtils progress ProtGenerics S4Vectors Spectra]; }; - MsCoreUtils = derive2 { name="MsCoreUtils"; version="1.12.0"; sha256="055xzlq37d75ghfk87bxbsv4yifidnwxc3w2gp8mcqxwkxxhd70a"; depends=[clue MASS Rcpp S4Vectors]; }; - MsDataHub = derive2 { name="MsDataHub"; version="1.0.0"; sha256="0nxyiqagaxsjknwxf4bfg4a68bv84lkzhziwv77z5b889yiw4scw"; depends=[ExperimentHub]; }; - MsExperiment = derive2 { name="MsExperiment"; version="1.2.0"; sha256="02q7zqq838xr1bdl2a5csq3p4p72wv8whjvrqsrqbykhfan265rn"; depends=[IRanges ProtGenerics QFeatures S4Vectors Spectra SummarizedExperiment]; }; - MsFeatures = derive2 { name="MsFeatures"; version="1.8.0"; sha256="0cb4b0mf5yh8amqwa3r0mbk2f3rgq40gdlkhifk50fxnqdy4fjsh"; depends=[MsCoreUtils ProtGenerics SummarizedExperiment]; }; - MsQuality = derive2 { name="MsQuality"; version="1.0.0"; sha256="0pvmmjhmhbz9j3hwrxff4x9a915qjcqcj5p8vlq956aifyrn5619"; depends=[BiocParallel ggplot2 htmlwidgets MsExperiment plotly ProtGenerics shiny shinydashboard Spectra stringr tibble tidyr]; }; - MuData = derive2 { name="MuData"; version="1.4.0"; sha256="1k2scwdl1hrqrr9blpac09z1xn7vvrrdfksq0cqfq1qxnpl4wmza"; depends=[DelayedArray Matrix MultiAssayExperiment rhdf5 S4Vectors SingleCellExperiment SummarizedExperiment]; }; - Mulcom = derive2 { name="Mulcom"; version="1.50.0"; sha256="0zvfa49n9bc5a3899ma89qz7lw9dkarv6h062nbn69gmyh91q8k4"; depends=[Biobase fields]; }; - MultiAssayExperiment = derive2 { name="MultiAssayExperiment"; version="1.26.0"; sha256="00xgca1q9ai5x730bvx73f25lpwkr3dn2sia3msa49fpl4nrzr20"; depends=[Biobase BiocBaseUtils BiocGenerics DelayedArray GenomicRanges IRanges S4Vectors SummarizedExperiment tidyr]; }; - MultiBaC = derive2 { name="MultiBaC"; version="1.10.0"; sha256="1qwf1mvw81hb929xpnx5x910f7qnax9lkylhwzcdw1814s4zj25i"; depends=[ggplot2 Matrix MultiAssayExperiment pcaMethods plotrix ropls]; }; - MultiDataSet = derive2 { name="MultiDataSet"; version="1.28.0"; sha256="1qyvwhmdv27xsyljyzyh52pn6x0wqx8rslvr2j7vqcjyywv270x6"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggrepel IRanges limma qqman S4Vectors SummarizedExperiment]; }; - MultiMed = derive2 { name="MultiMed"; version="2.22.0"; sha256="0d5dfgnh0js465j733yb1d37ljynj2xzbcv6x1smzb2a230z264z"; depends=[]; }; - MultimodalExperiment = derive2 { name="MultimodalExperiment"; version="1.0.0"; sha256="0ayy572nnbhl00w8n1618qmrbrzix6c8zmq7q55lw6p22kmb73rw"; depends=[BiocGenerics IRanges MultiAssayExperiment S4Vectors]; }; - MungeSumstats = derive2 { name="MungeSumstats"; version="1.8.0"; sha256="0kfc8iij2vlw3zamm63sdn1jir7a5yx5yqglkr3aiv8f6hzky0ik"; depends=[Biostrings BSgenome data_table dplyr GenomeInfoDb GenomicRanges googleAuthR httr IRanges jsonlite magrittr R_utils RCurl rtracklayer stringr VariantAnnotation]; }; - MutationalPatterns = derive2 { name="MutationalPatterns"; version="3.10.0"; sha256="1p9n5afnr4cx690w9d5q1hkwqffsbnsn72wibqcl5rbqgfsvhf8h"; depends=[BiocGenerics Biostrings BSgenome cowplot dplyr GenomeInfoDb GenomicRanges ggalluvial ggdendro ggplot2 IRanges magrittr NMF pracma purrr RColorBrewer S4Vectors stringr tibble tidyr VariantAnnotation]; }; - NADfinder = derive2 { name="NADfinder"; version="1.24.0"; sha256="0fc7z12hwjxfcyx9pqfwzjb4s3ijr6gnm4bnz9fsr13nncl9p3rr"; depends=[ATACseqQC baseline BiocGenerics corrplot csaw EmpiricalBrownsMethod GenomeInfoDb GenomicAlignments GenomicRanges IRanges limma metap Rsamtools rtracklayer S4Vectors signal SummarizedExperiment trackViewer]; }; - NBAMSeq = derive2 { name="NBAMSeq"; version="1.16.0"; sha256="1l5mk5mdbqypljrnnl7zcz8mgixg44bxaflka8wkfc60757qqkbd"; depends=[BiocParallel DESeq2 genefilter mgcv S4Vectors SummarizedExperiment]; }; - NCIgraph = derive2 { name="NCIgraph"; version="1.48.1"; sha256="0q7a4x50fkwi80lqdsfyr4nqa97xzld7n0lihpvr3zi44hcs9a1w"; depends=[graph KEGGgraph R_oo RBGL RCy3]; }; - NOISeq = derive2 { name="NOISeq"; version="2.44.0"; sha256="0cxhy4yrww6bh4z603389fikhix8rhfy04ylhm74fdmdng4jblg6"; depends=[Biobase Matrix]; }; - NPARC = derive2 { name="NPARC"; version="1.12.0"; sha256="1dx585zs94zazqy9hbrhivpn6p76a68nvlg6vng2r1qqmm2685mc"; depends=[BiocParallel broom dplyr magrittr MASS rlang tidyr]; }; - NTW = derive2 { name="NTW"; version="1.50.0"; sha256="1vmqd9jbjpjni5511fzvgkg2q22nxadm3a7xs97n8fc8w9jyghmc"; depends=[mvtnorm]; }; - NanoMethViz = derive2 { name="NanoMethViz"; version="2.6.0"; sha256="19m5f4yl1rr384aj3jw2842ckil8l52ssl7qgr7c6laq3fmvmd73"; depends=[AnnotationDbi assertthat BiocSingular bsseq cpp11 data_table dplyr e1071 forcats fs GenomicRanges ggplot2 ggrastr glue limma patchwork purrr R_utils Rcpp readr rlang Rsamtools RSQLite S4Vectors scales scico stringr SummarizedExperiment tibble tidyr withr zlibbioc]; }; - NanoStringDiff = derive2 { name="NanoStringDiff"; version="1.30.0"; sha256="0jh9c5z7nrxckbhs65jlp7hpsj7bg4gpgrz47x7a1kpw46f6h75p"; depends=[Biobase matrixStats Rcpp]; }; - NanoStringNCTools = derive2 { name="NanoStringNCTools"; version="1.8.0"; sha256="0s0bl4rp6pqcci48v6wybh82jn79q1jgd0x0m16xqf56nrrq05xx"; depends=[Biobase BiocGenerics Biostrings ggbeeswarm ggiraph ggplot2 ggthemes IRanges pheatmap RColorBrewer S4Vectors]; }; - NanoStringQCPro = derive2 { name="NanoStringQCPro"; version="1.32.0"; sha256="0k2sgs6d25ryjlm9c17nxqqcdi3q04j3y9qb1rig23jimfvs3xs9"; depends=[AnnotationDbi Biobase knitr NMF org_Hs_eg_db png RColorBrewer]; }; - NanoTube = derive2 { name="NanoTube"; version="1.6.0"; sha256="0bx7zm8y484y66plm01vk48a31hl2x9vn7scixaif8rp286m4wrr"; depends=[Biobase fgsea ggplot2 limma reshape]; }; - Nebulosa = derive2 { name="Nebulosa"; version="1.10.0"; sha256="0lqm9mfmaxdhhs9di2kjg2rixng78lrrikyp7blmpyqk4c41j3nh"; depends=[ggplot2 ks Matrix patchwork Seurat SingleCellExperiment SummarizedExperiment]; }; - NeighborNet = derive2 { name="NeighborNet"; version="1.18.0"; sha256="046k1799wz77ww4jhf935pfz2637dmzy7p848iyjxj1yc5g51jq8"; depends=[graph]; }; - NetActivity = derive2 { name="NetActivity"; version="1.2.0"; sha256="18yfh6c6ds552bglbdrwhrgh9r65gp6fgxplxafy6abrcdnhwzqf"; depends=[airway DelayedArray DelayedMatrixStats DESeq2 NetActivityData SummarizedExperiment]; }; - NetPathMiner = derive2 { name="NetPathMiner"; version="1.36.0"; sha256="0fbi4gbjxxxw76b9fph7gc6mqa4lyvsn5vwhfxwy50divl1w1i1r"; depends=[igraph]; }; - NetSAM = derive2 { name="NetSAM"; version="1.40.0"; sha256="056fz9zipamxq1rhrvk80yph5rvv2sackyxsbaxjpcafscj8j4gn"; depends=[AnnotationDbi biomaRt DBI doParallel foreach GO_db igraph R2HTML seriation survival WGCNA]; }; - NeuCA = derive2 { name="NeuCA"; version="1.6.0"; sha256="01bbmgmj873r3kjvsh8p1v9jzdhfzpn2rlq29bv1xf9hfvljm0ka"; depends=[e1071 keras limma SingleCellExperiment]; }; - NewWave = derive2 { name="NewWave"; version="1.10.0"; sha256="0ndy9d2xv166yxyqjzjs9y2mi214qdqm99pzydpn5xqyg72ljid5"; depends=[BiocSingular DelayedArray irlba Matrix SharedObject SingleCellExperiment SummarizedExperiment]; }; - NoRCE = derive2 { name="NoRCE"; version="1.12.0"; sha256="03pb0k638v56sws8ic92r6bq4kmr3rq9n4zhk32bmzbcnxyf4zc2"; depends=[AnnotationDbi biomaRt DBI dbplyr dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 GO_db igraph IRanges KEGGREST png RCurl reactome_db readr reshape2 RSQLite rtracklayer rWikiPathways S4Vectors stringr SummarizedExperiment tidyr zlibbioc]; }; - NormalyzerDE = derive2 { name="NormalyzerDE"; version="1.18.1"; sha256="0vdj7fd8nnm0xdjmfd9hrmnwspm0qzxgzsnr7bm4frr989z92xrs"; depends=[ape Biobase car ggforce ggplot2 limma MASS matrixStats preprocessCore raster RcmdrMisc SummarizedExperiment vsn]; }; - NormqPCR = derive2 { name="NormqPCR"; version="1.46.0"; sha256="1fq9f7q4nslls46pgf1x82karwk8kf89si5mgdbi6a73k672d0dk"; depends=[Biobase qpcR RColorBrewer ReadqPCR]; }; - NuPoP = derive2 { name="NuPoP"; version="2.8.1"; sha256="1nv88nrh1gmambcdm6xvpm8zjn4qg9hq0hbpz13p624zi364qyji"; depends=[]; }; - NxtIRFcore = derive2 { name="NxtIRFcore"; version="1.6.0"; sha256="1x3645v6ar8mpmyk6hd5w3m38496g68l2vdh80vh0hhlqlrp17n2"; depends=[AnnotationHub BiocFileCache BiocGenerics BiocParallel Biostrings BSgenome data_table DelayedArray DelayedMatrixStats fst genefilter GenomeInfoDb GenomicRanges ggplot2 HDF5Array IRanges magrittr NxtIRFdata plotly R_utils Rcpp RcppProgress rhdf5 rtracklayer S4Vectors SummarizedExperiment zlibbioc]; }; - OCplus = derive2 { name="OCplus"; version="1.74.0"; sha256="1s27nsm1djlwm882ylv8rbrcww9376nynwdi67a6wnx35nf43kjc"; depends=[interp multtest]; }; - ODER = derive2 { name="ODER"; version="1.6.0"; sha256="17c3hvdghli6i88yqy6dclzyad60s0d6y4hng6i4bycc9fnan41w"; depends=[BiocFileCache BiocGenerics dasper data_table derfinder dplyr GenomeInfoDb GenomicRanges ggplot2 ggpubr ggrepel IRanges magrittr megadepth plyr purrr rtracklayer S4Vectors stringr tibble]; }; - OGRE = derive2 { name="OGRE"; version="1.4.0"; sha256="0kzgy49a2jl8nyj7cqzcjf4gyws9zbhb45pyckl084vjg4w4wf61"; depends=[AnnotationHub assertthat data_table DT GenomeInfoDb GenomicRanges ggplot2 Gviz IRanges rtracklayer S4Vectors shiny shinyBS shinydashboard shinyFiles tidyr]; }; - OLIN = derive2 { name="OLIN"; version="1.78.0"; sha256="02cjrhpsmc1g9nxrbjpw5xna41w8xdszxfycpmbpx3w6ingccppz"; depends=[limma locfit marray]; }; - OLINgui = derive2 { name="OLINgui"; version="1.74.0"; sha256="0qybr4hrwphzwhdql3di3x89dm67y2aw62ac7n24x2glv2p9xdqz"; depends=[marray OLIN tkWidgets widgetTools]; }; - OMICsPCA = derive2 { name="OMICsPCA"; version="1.18.0"; sha256="1rkzs0i1650pz9q8v6axwspd3ykvmjd95zcbrgglm2r1gxw1iihn"; depends=[cluster clValid corrplot cowplot data_table factoextra FactoMineR fpc GenomeInfoDb ggplot2 HelloRanges IRanges kableExtra magick MASS MultiAssayExperiment NbClust OMICsPCAdata pdftools PerformanceAnalytics reshape2 rgl rmarkdown rtracklayer tidyr]; }; - OPWeight = derive2 { name="OPWeight"; version="1.22.0"; sha256="0fklx2c0p7h23976ywh74xsz3p55j5jq83qvqipynpxkp8b1jv7h"; depends=[MASS qvalue tibble]; }; - ORFhunteR = derive2 { name="ORFhunteR"; version="1.8.0"; sha256="03b4lz466hflprn6w3j6p0xrq9prrxd390zmn98v09819w9spl0i"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg38 data_table Peptides randomForest Rcpp rtracklayer stringr xfun]; }; - ORFik = derive2 { name="ORFik"; version="1.20.2"; sha256="1qdgi10za2d6mvqixx05fyr21blm8qmlpamir9mw9hhgjpvky7l9"; depends=[AnnotationDbi BiocGenerics BiocParallel biomaRt biomartr Biostrings BSgenome cowplot curl data_table DESeq2 downloader dplyr fst GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gridExtra httr IRanges jsonlite R_utils Rcpp RCurl readr Rsamtools rtracklayer S4Vectors stringr SummarizedExperiment tibble withr XML xml2]; }; - OSAT = derive2 { name="OSAT"; version="1.48.0"; sha256="095zbj204z705ai1fzj70m316ihg04f93cvjyx64wk5pbqdg5p4d"; depends=[]; }; - OTUbase = derive2 { name="OTUbase"; version="1.50.0"; sha256="0n2fghi0b5f012l57lr4qsvj85kjsg80iqpsgfajkdakam860i3w"; depends=[Biobase Biostrings IRanges S4Vectors ShortRead vegan]; }; - OUTRIDER = derive2 { name="OUTRIDER"; version="1.18.1"; sha256="08xkpsqpgg9xjz9lalsxxvfyqjljby6q5i8awv5m2c8zn5b0mami"; depends=[BBmisc BiocGenerics BiocParallel data_table DESeq2 generics GenomicFeatures GenomicRanges ggplot2 heatmaply IRanges matrixStats pcaMethods pheatmap plotly plyr PRROC RColorBrewer Rcpp RcppArmadillo reshape2 S4Vectors scales SummarizedExperiment]; }; - OVESEG = derive2 { name="OVESEG"; version="1.16.0"; sha256="1qhraxrlqbhi3zvz53ignwd90gmxz62jblg5m8lv2alcfyfp4man"; depends=[BiocParallel fdrtool limma Rcpp SummarizedExperiment]; }; - OmaDB = derive2 { name="OmaDB"; version="2.16.0"; sha256="1qhypwk8ciqgdvg0wv0yv5y8hcg537w9icnkl3fi5jzc030y4570"; depends=[ape Biostrings GenomicRanges httr IRanges jsonlite plyr topGO]; }; - OmicCircos = derive2 { name="OmicCircos"; version="1.38.0"; sha256="0zqw0ccngkh00l5wk2kn6fpr249rrkm8sasrzypax943xygnh6i0"; depends=[GenomicRanges]; }; - OmicsLonDA = derive2 { name="OmicsLonDA"; version="1.15.0"; sha256="1kn26k0lnk7hgfzk1kh5bh41zkia8a4pzsfr35mbjrflcxmvgk2w"; depends=[BiocGenerics BiocParallel ggplot2 gss plyr pracma SummarizedExperiment zoo]; }; - Omixer = derive2 { name="Omixer"; version="1.10.0"; sha256="0piqs23sdsphsynv2wqs7vmpjgsl1kymfjr3xx9nx9jrzjhh5fma"; depends=[dplyr forcats ggplot2 gridExtra magrittr readr stringr tibble tidyselect]; }; - OmnipathR = derive2 { name="OmnipathR"; version="3.8.2"; sha256="13ac98jj03vkzrc1ghrs98qrfvr74wz099w26lgc7jw2yxj575as"; depends=[checkmate crayon curl digest dplyr httr igraph jsonlite later logger magrittr progress purrr rappdirs readr readxl rlang rmarkdown rvest stringr tibble tidyr tidyselect withr xml2 yaml]; }; - OncoScore = derive2 { name="OncoScore"; version="1.28.0"; sha256="00wnw7b9sj00h6kdlbh9r8frdcy8x5vdxjc8v2cbk6avll8w2z9a"; depends=[biomaRt]; }; - OncoSimulR = derive2 { name="OncoSimulR"; version="4.2.0"; sha256="1s33kjsv72zslygg108m16wrzv4d55xn0pdjfpzy9sdgh2j8yviz"; depends=[car data_table dplyr ggplot2 ggrepel graph gtools igraph RColorBrewer Rcpp Rgraphviz smatr stringr]; }; - OpenStats = derive2 { name="OpenStats"; version="1.12.0"; sha256="1pw6g4nrnmvfd5qbg3z79qzlzyf0n196vpklx8xwhd7zpr6djbkq"; depends=[AICcmodavg car Hmisc jsonlite knitr MASS nlme rlist summarytools]; }; - OrderedList = derive2 { name="OrderedList"; version="1.72.0"; sha256="06z0x71k2593f8kpvh692ki2sdf73in24nn1id36vzbwpfv4dy7a"; depends=[Biobase twilight]; }; - Organism_dplyr = derive2 { name="Organism.dplyr"; version="1.28.0"; sha256="0yrd7a7c0n6c987gyy76jidpvsdwrv2097f9wkvh4y5dd1w0mk7p"; depends=[AnnotationDbi AnnotationFilter BiocFileCache DBI dbplyr dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges rlang RSQLite S4Vectors tibble]; }; - OrganismDbi = derive2 { name="OrganismDbi"; version="1.42.0"; sha256="1pw3qd6n0xf7vq3x73612bndcqhwrqkpi29f6crazdzjcy3fivlb"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager DBI GenomicFeatures GenomicRanges graph IRanges RBGL S4Vectors]; }; - Oscope = derive2 { name="Oscope"; version="1.30.0"; sha256="055j7y1icikqivc795hzl1l5v5ga2bfcqk2x0kivawbrqvj4yq5v"; depends=[BiocParallel cluster EBSeq testthat]; }; - OutSplice = derive2 { name="OutSplice"; version="1.0.1"; sha256="0yi18b1zqmrlm1wa5b1rv2pc8amwflx3rg2bli3y92gs0w65frv7"; depends=[AnnotationDbi GenomicFeatures GenomicRanges IRanges org_Hs_eg_db Repitools S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - PAA = derive2 { name="PAA"; version="1.34.0"; sha256="00ciqvcnlsaaynvdxa05wskk2w90rjsa8syrj5rqs5yk32dzrk6s"; depends=[e1071 gplots gtools limma MASS mRMRe randomForest Rcpp ROCR sva]; }; - PADOG = derive2 { name="PADOG"; version="1.42.0"; sha256="13rr5wfdcvwqcrf3548hd0h9nld9k5nj9z6m1vb0a3v1frd37c6s"; depends=[AnnotationDbi Biobase doRNG foreach GSA hgu133a_db hgu133plus2_db KEGGdzPathwaysGEO KEGGREST limma nlme]; }; - PAIRADISE = derive2 { name="PAIRADISE"; version="1.16.0"; sha256="0aypxg7vg58m3gz7j2qghlxshn9sgdzawaw7axjqz957i4hv8475"; depends=[abind BiocParallel nloptr S4Vectors SummarizedExperiment]; }; - PANR = derive2 { name="PANR"; version="1.46.0"; sha256="18g5ynjiqfb1b667qwg8rxbjabw08kkbm14m6rp7sndcxwrd2z89"; depends=[igraph MASS pvclust RedeR]; }; - PAST = derive2 { name="PAST"; version="1.16.0"; sha256="1pyz1v67zycj3bhkhc0in4cic2f6ly27d6rjs4b5j88a0f5v5568"; depends=[doParallel dplyr foreach GenomicRanges ggplot2 iterators qvalue rlang rtracklayer S4Vectors]; }; - PCAN = derive2 { name="PCAN"; version="1.28.0"; sha256="0993q5j6sd9f5p3gxrw88jg7v3zx7sk2ma9d4qfzja7x5yh2a5r3"; depends=[BiocParallel]; }; - PCAtools = derive2 { name="PCAtools"; version="2.12.0"; sha256="07kl7s2zd7nkhg4hib2mr3w5lhqy780aw53yqsd7bfsjh53k8g95"; depends=[beachmat BH BiocParallel BiocSingular cowplot DelayedArray DelayedMatrixStats dqrng ggplot2 ggrepel lattice Matrix Rcpp reshape2]; }; - PDATK = derive2 { name="PDATK"; version="1.8.0"; sha256="00qkn8hlx9xfzzly2w77s2nicvdqqqx7ki47yni871fyrvarmyjd"; depends=[BiocGenerics BiocParallel caret clusterRepro ConsensusClusterPlus CoreGx data_table dplyr genefu ggplot2 ggplotify igraph MatrixGenerics matrixStats MultiAssayExperiment piano plyr pROC RColorBrewer reportROC rlang S4Vectors scales SummarizedExperiment survcomp survival survminer switchBox verification]; }; - PECA = derive2 { name="PECA"; version="1.36.0"; sha256="1jx5601ccwcsljvs26xh51ibjgigb9iszm1xl0h2apnr3x8yq6n7"; depends=[affy aroma_affymetrix aroma_core genefilter limma preprocessCore ROTS]; }; - PERFect = derive2 { name="PERFect"; version="1.14.0"; sha256="0ygbirfnp122c8jzrig5cnm6rxyhz126ixl5ca49i13kizcv2ns9"; depends=[fitdistrplus ggplot2 Matrix phyloseq psych sn zoo]; }; - PFP = derive2 { name="PFP"; version="1.7.0"; sha256="1328a73ggg7l1drjbmv67jcvlv83khn1k252mf81xj4gf213d0di"; depends=[clusterProfiler ggplot2 graph igraph KEGGgraph magrittr plyr tidyr]; }; - PICS = derive2 { name="PICS"; version="2.44.0"; sha256="1np7szl5pzjbm0zv4fcky43q4y415digsa19hwf9dd5cmb5sr29g"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools]; }; - PING = derive2 { name="PING"; version="2.44.0"; sha256="0gd1i3d19sl735pwl4iqfbbggcxl3klhvnzlri56hhmv16mifpz2"; depends=[BiocGenerics BSgenome fda GenomicRanges Gviz IRanges PICS S4Vectors]; }; - PLPE = derive2 { name="PLPE"; version="1.60.0"; sha256="1iwpzzpisnpm8clkq33fdhb1c5cas8rl9zx9ywj3s768fgk77k9z"; depends=[Biobase LPE MASS]; }; - POMA = derive2 { name="POMA"; version="1.10.0"; sha256="0jvpz1va0ggs46i4ad881pljp5rcl7i4br5jiywhhf22pvwx4spk"; depends=[broom caret ComplexHeatmap dbscan DESeq2 dplyr ggplot2 ggrepel glasso glmnet impute limma magrittr mixOmics randomForest RankProd rmarkdown SummarizedExperiment tibble tidyr uwot vegan]; }; - POWSC = derive2 { name="POWSC"; version="1.8.0"; sha256="15lab9pibpfs6ln6jkq3k3z2zpa348g50j1fsnw4cxirwiml6sh6"; depends=[Biobase ggplot2 limma MAST pheatmap RColorBrewer SingleCellExperiment SummarizedExperiment]; }; - PPInfer = derive2 { name="PPInfer"; version="1.26.0"; sha256="0x03k3amikwhf44fz6wgdgqd1s3akpsz5w65ql6scz2s4j445zi6"; depends=[biomaRt fgsea ggplot2 httr igraph kernlab STRINGdb yeastExpData]; }; - PREDA = derive2 { name="PREDA"; version="1.46.0"; sha256="1xw4v9hgj9ran915nqkfc5slk1djdh8sv3hahh84imlbgqlwfjm3"; depends=[annotate Biobase lokern multtest]; }; - PROMISE = derive2 { name="PROMISE"; version="1.52.0"; sha256="197cmmzr66gg7pz8n0mll74rd4fpwygi9aymymdkqs1819mmsrr8"; depends=[Biobase GSEABase]; }; - PROPER = derive2 { name="PROPER"; version="1.32.0"; sha256="1x9wswa6bckaxipzpsc0iyqrj9337q2kdhzfs78aqacwwwy9ihdh"; depends=[edgeR]; }; - PROPS = derive2 { name="PROPS"; version="1.22.0"; sha256="0ijmi3ky6i7462xp2l2j3wmgjg1lybpn4s335ggcvq7snw4cfw37"; depends=[Biobase bnlearn reshape2 sva]; }; - PROcess = derive2 { name="PROcess"; version="1.76.0"; sha256="1bvjvx1n4n9q12p5mw58v71712x7gxx7ji6ccgr0wdwfn6xd0r8i"; depends=[Icens]; }; - PSEA = derive2 { name="PSEA"; version="1.34.0"; sha256="083xpj01pxrrj9f3kl23gr7bz7pqz7bbxbbqzq345m015rwaqnhq"; depends=[Biobase MASS]; }; - PSMatch = derive2 { name="PSMatch"; version="1.4.0"; sha256="0vw0nr300p8qfd4l7cl3jc8ds1i23rhz4mh5kjpqx1720ifwzbrv"; depends=[BiocGenerics BiocParallel igraph Matrix MsCoreUtils ProtGenerics QFeatures S4Vectors]; }; - PWMEnrich = derive2 { name="PWMEnrich"; version="4.36.0"; sha256="0qqn4bbs1dslfhzaqab3gway2ib7p1ijmqw1s5rfa4fhgpyi4wjk"; depends=[BiocGenerics Biostrings evd gdata S4Vectors seqLogo]; }; - PanViz = derive2 { name="PanViz"; version="1.2.0"; sha256="1m2vsnrzai508wjhl0y6bl4x0wa05ng6lj6513d9mfrd3ix3wdb7"; depends=[colorspace data_table dplyr easycsv futile_logger igraph magrittr RColorBrewer rentrez rlang stringr tibble tidyr]; }; - PanomiR = derive2 { name="PanomiR"; version="1.4.0"; sha256="1pgfqacccq74yx99ywsf6pqapggzh38hpp4f67ql84vsnrw85fml"; depends=[clusterProfiler dplyr forcats GSEABase igraph limma metap org_Hs_eg_db preprocessCore RColorBrewer rlang tibble withr]; }; - Path2PPI = derive2 { name="Path2PPI"; version="1.30.0"; sha256="1f3szgcj8370jk6h4wk10lgcnvk4yl4zq9dnm1i04qwv1mqkgflp"; depends=[igraph]; }; - PathNet = derive2 { name="PathNet"; version="1.40.1"; sha256="0y872vanyaj2llfjwbqcfc9apd0b9cyzak2f0rbb3lf45s83x0v8"; depends=[]; }; - PathoStat = derive2 { name="PathoStat"; version="1.26.0"; sha256="0b18m4axr77zm5bq0y5nrhyjim3sadxzhys4fqagzrn36yzd0k2v"; depends=[ape BiocStyle ComplexHeatmap corpcor DESeq2 devtools dplyr DT edgeR ggplot2 glmnet gmodels knitr limma matrixStats phyloseq plotly plyr RColorBrewer rentrez reshape2 ROCR scales shiny shinyjs tidyr vegan webshot XML]; }; - PeacoQC = derive2 { name="PeacoQC"; version="1.10.0"; sha256="0rh1mqzn7kf26i6y2j5z3wkbyxrqfpclpjrsnb9p4vhdix774z1q"; depends=[circlize ComplexHeatmap flowCore flowWorkspace ggplot2 gridExtra plyr]; }; - PepsNMR = derive2 { name="PepsNMR"; version="1.18.0"; sha256="17rbadvay3kbp4r6p023yww4biw9cl359q200ciygr7d2ffcas85"; depends=[ggplot2 gridExtra Matrix matrixStats ptw reshape2]; }; - PhIPData = derive2 { name="PhIPData"; version="1.8.0"; sha256="1vls3py5xn7c7zxxpwh40i8q9yir705mhvh7f1x0icl8clxh7x0i"; depends=[BiocFileCache BiocGenerics cli edgeR GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; - PharmacoGx = derive2 { name="PharmacoGx"; version="3.4.0"; sha256="06f0jng8i0315399bsn3kpzjpik6ipvcjdba7yq5104a492wh0n7"; depends=[Biobase BiocGenerics BiocParallel boot caTools checkmate coop CoreGx data_table downloader ggplot2 jsonlite magicaxis MultiAssayExperiment RColorBrewer Rcpp reshape2 S4Vectors SummarizedExperiment]; }; - PhenStat = derive2 { name="PhenStat"; version="2.36.0"; sha256="1q5lpn352acpzfawwch0n4dra3znb7rghg4zl7wnc146s6628pyd"; depends=[car corrplot ggplot2 graph knitr lme4 logistf MASS msgps nlme nortest pingr reshape SmoothWin]; }; - PhenoGeneRanker = derive2 { name="PhenoGeneRanker"; version="1.8.0"; sha256="1izqzvasir1jsfas626m82141gd34zk6j0k4ff4n2dk4r51id37n"; depends=[doParallel dplyr foreach igraph Matrix]; }; - PhosR = derive2 { name="PhosR"; version="1.10.0"; sha256="0lcri7cfx2bvva1c48bq7rqzk9vag0rqy00myxhy3nqqp5vf16ws"; depends=[BiocGenerics circlize dendextend dplyr e1071 GGally ggdendro ggplot2 ggpubr ggtext igraph limma network pcaMethods pheatmap preprocessCore RColorBrewer reshape2 rlang ruv S4Vectors stringi SummarizedExperiment tidyr]; }; - PhyloProfile = derive2 { name="PhyloProfile"; version="1.14.6"; sha256="1kgxani11748n4jglfh58p2v7sj8q42sql4fl07hgnbcpb0amg5x"; depends=[ape BiocStyle bioDist Biostrings colourpicker data_table DT energy ExperimentHub ggplot2 gridExtra OmaDB pbapply plyr RColorBrewer RCurl shiny shinyBS shinyFiles shinyjs xml2 yaml zoo]; }; - Pi = derive2 { name="Pi"; version="2.12.0"; sha256="1k6i2byxranyph1034aph1vr1jjkx4d9gsni666p60ssg05bbvbi"; depends=[BiocGenerics caret dnet dplyr GenomeInfoDb GenomicRanges ggnetwork ggplot2 ggrepel glmnet igraph IRanges lattice MASS Matrix osfr plot3D purrr randomForest RCircos readr ROCR scales supraHex tibble tidyr]; }; - Pigengene = derive2 { name="Pigengene"; version="1.26.0"; sha256="0b13bkj554w1wh6z393lw6l2ndydkblx4pck7zl0vbh2mwiiamkm"; depends=[BiocStyle bnlearn C50 clusterProfiler DBI DOSE dplyr gdata ggplot2 GO_db graph impute MASS matrixStats openxlsx partykit pheatmap preprocessCore ReactomePA Rgraphviz WGCNA]; }; - PloGO2 = derive2 { name="PloGO2"; version="1.12.0"; sha256="1s5ay04ky0bimn4kqzqakygldcd08s7d0kvbn6sdyhf39avb6vv3"; depends=[GO_db GOstats httr lattice openxlsx xtable]; }; - PoDCall = derive2 { name="PoDCall"; version="1.8.0"; sha256="1vph2lvs0wcnx56yngzw7ms2si8zq1k4imxrixzhvs0xj67qkbfc"; depends=[diptest DT ggplot2 gridExtra LaplacesDemon mclust purrr readr rlist shiny shinyjs]; }; - PrInCE = derive2 { name="PrInCE"; version="1.16.0"; sha256="012dnavlx0abizh7bfms8cn4c4hx3sps3hzivddskap5czi7drxv"; depends=[Biobase dplyr forecast Hmisc LiblineaR magrittr MSnbase naivebayes progress purrr ranger Rdpack robustbase speedglm tester tidyr]; }; - Prostar = derive2 { name="Prostar"; version="1.32.6"; sha256="0ydrpisl9b15m2fa0ba61glymd3xvq27pds4pk2zm3lazypm69gm"; depends=[Biobase DAPAR DAPARdata data_table future ggplot2 gplots highcharter htmlwidgets later promises rhandsontable shiny shinyAce shinyBS shinycssloaders shinyjqui shinyjs shinythemes tibble vioplot webshot]; }; - ProtGenerics = derive2 { name="ProtGenerics"; version="1.32.0"; sha256="0fgsb47qrvrl4y3yr094mas22rai5h5yl9mciadd6zcpamp2p01i"; depends=[]; }; - ProteoDisco = derive2 { name="ProteoDisco"; version="1.6.0"; sha256="04m4lqiz43fscqbxjq3ymz8mhg88sihpchdv68pizsag7bz5bzjg"; depends=[BiocGenerics BiocParallel Biostrings checkmate cleaver dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges ParallelLogger plyr rlang S4Vectors tibble tidyr VariantAnnotation XVector]; }; - ProteoMM = derive2 { name="ProteoMM"; version="1.18.0"; sha256="1f2m3jdslp139bm0l40gcp5j27vjnp5a2zk8339zpp5j6ihhhvnw"; depends=[biomaRt gdata ggplot2 ggrepel gtools matrixStats]; }; - PureCN = derive2 { name="PureCN"; version="2.6.4"; sha256="1hkw99h1xh8mivknhp6whg68rm391hfc0agx7cmaxc7b0p1bmhd7"; depends=[Biobase BiocGenerics Biostrings data_table DNAcopy futile_logger GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra IRanges Matrix mclust RColorBrewer rhdf5 Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation VGAM]; }; - Pviz = derive2 { name="Pviz"; version="1.34.0"; sha256="0d6ibqvpcaxd9b4b5asvxm1q3ys42aj2x1wfwfy0lcw7r9naavcy"; depends=[Biostrings biovizBase data_table GenomicRanges Gviz IRanges]; }; - QDNAseq = derive2 { name="QDNAseq"; version="1.36.0"; sha256="0lcf5zkv44s7xsa2svxia7inv6iz2k1kilfj5zcq80r339pj3vx4"; depends=[Biobase CGHbase CGHcall DNAcopy future_apply GenomicRanges IRanges matrixStats R_utils Rsamtools]; }; - QFeatures = derive2 { name="QFeatures"; version="1.10.0"; sha256="1xnmd14nf4cqbfxkjsl6af312k7l27ars5g8qdnljylkn8kq276z"; depends=[AnnotationFilter Biobase BiocGenerics igraph IRanges lazyeval MsCoreUtils MultiAssayExperiment plotly ProtGenerics S4Vectors SummarizedExperiment]; }; - QSutils = derive2 { name="QSutils"; version="1.18.0"; sha256="0prwfksw60kjbg4sg9qylh89a070m8ry00h1chl50v5xj8ggx19m"; depends=[ape BiocGenerics Biostrings psych]; }; - QUBIC = derive2 { name="QUBIC"; version="1.28.0"; sha256="07vq8203z9dpim12578p81pkbfrpm3vmwnp59x3h5p69g23f7flp"; depends=[biclust Matrix Rcpp RcppArmadillo]; }; - Qtlizer = derive2 { name="Qtlizer"; version="1.14.0"; sha256="1rnk916l9z495vic76nv9pjl6yvdrh8hkpiravw74jcy2dgnnlqz"; depends=[curl GenomicRanges httr stringi]; }; - QuartPAC = derive2 { name="QuartPAC"; version="1.32.0"; sha256="1bknjgjh9wsq5f2n7bvb2qp11cp25jaccprf70z0lpz1q93pq0x0"; depends=[data_table GraphPAC iPAC SpacePAC]; }; - QuasR = derive2 { name="QuasR"; version="1.40.1"; sha256="08vns1wbgpxw1x6djp84f9hl3gqaybbw9917ghfzk0x3ijpvggbg"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicFiles GenomicRanges IRanges Rbowtie Rhtslib Rsamtools rtracklayer S4Vectors ShortRead]; }; - QuaternaryProd = derive2 { name="QuaternaryProd"; version="1.34.0"; sha256="1dcn6fsp4ijj8bzca94bby41acc0hfizsyfzrvlhgpj0mzbdm2fs"; depends=[dplyr Rcpp yaml]; }; - R3CPET = derive2 { name="R3CPET"; version="1.32.0"; sha256="0fwlqwxqxpir6gjk322x7j90clzmcdkbqx6nhcxw8nw3iskvb9hh"; depends=[BiocGenerics clValid data_table GenomeInfoDb GenomicRanges ggbio ggplot2 Hmisc igraph IRanges pheatmap Rcpp RCurl reshape2 S4Vectors]; }; - R453Plus1Toolbox = derive2 { name="R453Plus1Toolbox"; version="1.50.0"; sha256="088ndhshqc1119ma1gsmgdw91hn3xndqh97xaqqqv99x4ci5my8k"; depends=[Biobase BiocGenerics biomaRt Biostrings BSgenome GenomicRanges IRanges R2HTML Rsamtools S4Vectors ShortRead SummarizedExperiment TeachingDemos VariantAnnotation xtable XVector]; }; - R4RNA = derive2 { name="R4RNA"; version="1.28.0"; sha256="1i4c9477xsp3hq5kxydrimhl6g8vshwbqgnhap5n1ykxbsval1pp"; depends=[Biostrings]; }; - RAREsim = derive2 { name="RAREsim"; version="1.4.0"; sha256="03wa414bkxg30z6syj40v41q09y981qwjqlqzryfiy1cn1wcrkfn"; depends=[nloptr]; }; - RBGL = derive2 { name="RBGL"; version="1.76.0"; sha256="0y6ghiwraw3whs57i31qnvlvqlbl9143wxv2yg48rp7qxipxvn6s"; depends=[BH graph]; }; - RBM = derive2 { name="RBM"; version="1.32.0"; sha256="184imyl3vib3953j5x8lqfdi86spp71r59qnsm9c5yh5f0i4z95z"; depends=[limma marray]; }; - RBioFormats = derive2 { name="RBioFormats"; version="1.0.0"; sha256="1ffpl9f78j2fdhl4a3sgjpcq242j4rq7sg2lnbx7c86by8bhzfsg"; depends=[EBImage rJava S4Vectors]; }; - RBioinf = derive2 { name="RBioinf"; version="1.60.0"; sha256="1wq11z55fz7jd1r081fyb336kzm5h17gfiap4abc60yxnprklq0c"; depends=[graph]; }; - RCAS = derive2 { name="RCAS"; version="1.26.0"; sha256="073fhbh0pzyca90q2irbaiwj21sci8jf9ksflx9pm9fr1giy37i4"; depends=[BiocGenerics Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 cowplot data_table DT genomation GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggseqlogo gprofiler2 IRanges knitr pbapply pheatmap plotly plotrix proxy ranger rmarkdown RSQLite rtracklayer S4Vectors]; }; - RCASPAR = derive2 { name="RCASPAR"; version="1.46.0"; sha256="0rk394h8ahqfisgsq5g5sm6ajhvriki8868jf97lz9iq1kr8fac0"; depends=[]; }; - RCM = derive2 { name="RCM"; version="1.16.0"; sha256="0pqxhjqm2sfnifhqz8n6yc53npp32cpfdvhz5xk71f93mf3cdc13"; depends=[alabama DBI edgeR ggplot2 MASS nleqslv phyloseq RColorBrewer reshape2 tensor tseries VGAM]; }; - RCSL = derive2 { name="RCSL"; version="1.8.0"; sha256="149bh9bd6h9qg82cnbnl9m8w8d10cw8b0z31qbyb9byfakn0a9hn"; depends=[ggplot2 igraph NbClust pracma RcppAnnoy Rtsne umap]; }; - RCX = derive2 { name="RCX"; version="1.4.0"; sha256="1mpwb0j2zgbiqprn7gs9lcz4xpnnfllmgy2j2h9wkmac4241p1p9"; depends=[igraph jsonlite plyr]; }; - RCy3 = derive2 { name="RCy3"; version="2.20.2"; sha256="1zy51ky7cqafw7j2z9gn68vacrlg4pa0kzsa1pi2jdiaisfyvmpf"; depends=[base64enc base64url BiocGenerics fs glue gplots graph httr IRdisplay IRkernel RColorBrewer RCurl RJSONIO uchardet uuid XML]; }; - RCyjs = derive2 { name="RCyjs"; version="2.22.0"; sha256="0is771gp92m4hcvrajhrd8gi7akxrla9wwfal8pkcdac3gyv8z31"; depends=[base64enc BiocGenerics BrowserViz graph httpuv]; }; - RDRToolbox = derive2 { name="RDRToolbox"; version="1.50.0"; sha256="1s7ab6mdarhsyhy1lsnf8kc60ba22gp2a4ydykwlwn0hx50zw6p5"; depends=[MASS rgl]; }; - REBET = derive2 { name="REBET"; version="1.18.0"; sha256="0hhziwl6mhf8f63d2am2p1kkn15s9dd4vvlg70mzb0bw2mkfx83r"; depends=[ASSET]; }; - REDseq = derive2 { name="REDseq"; version="1.46.0"; sha256="06vlllrmpz4v2bq2lg2apzaga2mxbig05zp6y8lvvg1rdz24arjl"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome BSgenome_Celegans_UCSC_ce2 ChIPpeakAnno IRanges multtest]; }; - REMP = derive2 { name="REMP"; version="1.24.0"; sha256="0aa4pbg6y528vmxl09f4z6x8vg9arm551dxrdiwm230mmvz87i13"; depends=[AnnotationHub BiocGenerics BiocParallel Biostrings BSgenome caret doParallel foreach GenomeInfoDb GenomicRanges impute IRanges iterators kernlab minfi org_Hs_eg_db ranger readr rtracklayer S4Vectors settings SummarizedExperiment]; }; - RESOLVE = derive2 { name="RESOLVE"; version="1.2.0"; sha256="06f47zkf7qx26wf5dnv1k5f8jpiwybxigi1ywf9rsl8l3waz3rds"; depends=[Biostrings BSgenome BSgenome_Hsapiens_1000genomes_hs37d5 data_table GenomeInfoDb GenomicRanges ggplot2 glmnet gridExtra IRanges lsa MutationalPatterns nnls reshape2 S4Vectors]; }; - RGMQL = derive2 { name="RGMQL"; version="1.20.0"; sha256="0y9dn0n25bw4wmvhsvggbdi7g3arjadx3n6zwq3vs9sg7f2b6920"; depends=[BiocGenerics data_table dplyr GenomicRanges glue httr plyr RGMQLlib rJava rtracklayer S4Vectors xml2]; }; - RGSEA = derive2 { name="RGSEA"; version="1.34.0"; sha256="006vixj3iniwl59vy1vqwljbs20hi0x92iaqia21yr1rzjcds00l"; depends=[BiocGenerics]; }; - RGraph2js = derive2 { name="RGraph2js"; version="1.28.0"; sha256="0faj004m1nsclhppy2h5csf5328k7hk0kr7dayg6fmybqg14mjx9"; depends=[digest graph rjson whisker]; }; - RIPAT = derive2 { name="RIPAT"; version="1.10.0"; sha256="154a79xyihxkg3sbwxz9ch0ixqlqv9gwkpsv88i55c75qyzkx2sm"; depends=[biomaRt GenomicRanges ggplot2 IRanges karyoploteR openxlsx plyr regioneR rtracklayer stringr]; }; - RITAN = derive2 { name="RITAN"; version="1.24.0"; sha256="0ii802qcrbkdhp7w6qq9zmhqa49xl3h7y43pxr20lgx3659gy9ky"; depends=[AnnotationFilter BgeeDB dynamicTreeCut EnsDb_Hsapiens_v86 ensembldb GenomicFeatures ggplot2 gplots gridExtra gsubfn hash igraph knitr linkcomm MCL plotrix png RColorBrewer reshape2 RITANdata sqldf STRINGdb]; }; - RIVER = derive2 { name="RIVER"; version="1.24.0"; sha256="1r6gy1hwbsy8xmh6ny0cv1dyw8qbkdv9nvv8jqqkfvppcc3kbrb5"; depends=[Biobase ggplot2 glmnet pROC]; }; - RImmPort = derive2 { name="RImmPort"; version="1.28.0"; sha256="0mk2in55948vpmfaaa50fclwg5zjv4hhcdzmskzlgz4y5c5w4lj5"; depends=[data_table DBI dplyr plyr reshape2 RSQLite sqldf]; }; - RJMCMCNucleosomes = derive2 { name="RJMCMCNucleosomes"; version="1.24.0"; sha256="0ly526in7w5q1adaynfrhisrvzzrw6r6a4wj7snwpc2zs4by65vw"; depends=[BiocGenerics BiocParallel consensusSeekeR GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; - RLMM = derive2 { name="RLMM"; version="1.62.0"; sha256="1ip09ragnsihyimyaj2qlgpa9a214819kmp7jw0l6shmzij5g8kl"; depends=[MASS]; }; - RLSeq = derive2 { name="RLSeq"; version="1.6.0"; sha256="1nbln5dcaz5z33dqkvsbd3ld3kplfizkmaizldygrlrf6azbczwr"; depends=[AnnotationHub aws_s3 callr caretEnsemble circlize ComplexHeatmap dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggplotify ggprism pheatmap RColorBrewer regioneR RLHub rtracklayer valr VennDiagram]; }; - RLassoCox = derive2 { name="RLassoCox"; version="1.8.0"; sha256="0ks2adx6j4mdsqs7vx8wnxazlxx1hwhhzkma429zbkk600rl99vx"; depends=[glmnet igraph Matrix survival]; }; - RMassBank = derive2 { name="RMassBank"; version="3.10.0"; sha256="0qxjhg1r2n75q6wh03dbgrjk4imn0yank3bb19ma2cq9vnbj83qh"; depends=[assertthat Biobase ChemmineOB ChemmineR data_table digest enviPat httr logger MSnbase mzR R_utils rcdk Rcpp RCurl readJDX rjson S4Vectors webchem XML yaml]; }; - RNAAgeCalc = derive2 { name="RNAAgeCalc"; version="1.12.0"; sha256="0l3yr6c1zgjj27vfr562q48k9j9pd0vkg3yxx7jl8962k8l5741r"; depends=[AnnotationDbi ggplot2 impute org_Hs_eg_db recount SummarizedExperiment]; }; - RNASeqPower = derive2 { name="RNASeqPower"; version="1.40.0"; sha256="15i1dfdznkd6hhy1xswqyniyv41ml2yjibnf0fgiz22x76sjr8ic"; depends=[]; }; - RNAdecay = derive2 { name="RNAdecay"; version="1.19.0"; sha256="1qn9ymsj87x9spnqrdga9dqnvz4s4nq7f47amd9gvmfj1q0k3v5a"; depends=[ggplot2 gplots nloptr scales TMB]; }; - RNAinteract = derive2 { name="RNAinteract"; version="1.48.0"; sha256="0wkci7j80lyr6yaw9ixcz8wdkwqa7mz6rbyxisv38dzq30l8xab1"; depends=[abind Biobase cellHTS2 geneplotter gplots hwriter ICS ICSNP lattice latticeExtra limma locfit RColorBrewer splots]; }; - RNAmodR = derive2 { name="RNAmodR"; version="1.14.0"; sha256="1xbqz00km5nni0njchmylqppdx70nzmlamspjyz1yll295cil23m"; depends=[BiocGenerics BiocParallel Biostrings BSgenome colorRamps GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 Gviz IRanges matrixStats Modstrings RColorBrewer reshape2 ROCR Rsamtools rtracklayer S4Vectors]; }; - RNAmodR_AlkAnilineSeq = derive2 { name="RNAmodR.AlkAnilineSeq"; version="1.14.0"; sha256="17i4v2mxa518iaa62hh4bvcp61wxnsskawdy380m35zgzj7xngvs"; depends=[BiocGenerics GenomicRanges Gviz IRanges RNAmodR S4Vectors]; }; - RNAmodR_ML = derive2 { name="RNAmodR.ML"; version="1.14.0"; sha256="0gfh728g10ni31fy7wriax4hyr91v8lj6nbaxm1lfgzjkfis5q3z"; depends=[BiocGenerics GenomicRanges IRanges ranger RNAmodR S4Vectors]; }; - RNAmodR_RiboMethSeq = derive2 { name="RNAmodR.RiboMethSeq"; version="1.14.0"; sha256="08nwgw8my8gywrv0r146v4a0c68i44v36n8ly9g2m7hrlnn0gzjx"; depends=[BiocGenerics GenomicRanges Gviz IRanges RNAmodR S4Vectors]; }; - RNAsense = derive2 { name="RNAsense"; version="1.14.0"; sha256="0gsr2f27haw5ddl1xw6wwnzfnzsxb6gcjvcmz1qq2jy9g7bf3bzc"; depends=[ggplot2 NBPSeq qvalue SummarizedExperiment]; }; - ROC = derive2 { name="ROC"; version="1.76.0"; sha256="0fq59bwc5i8zdw0v0jr5j5lm4hk6p7b88i2xndsgj4fq65yr50g1"; depends=[knitr]; }; - ROCpAI = derive2 { name="ROCpAI"; version="1.12.0"; sha256="1zv9myp0c5jfyvdwqdj2imwrv60pii4j1v9ywm6m1yhnm6w25gsx"; depends=[boot fission knitr SummarizedExperiment]; }; - ROSeq = derive2 { name="ROSeq"; version="1.12.0"; sha256="1ddfxxpn601r0yi9ca1l3z00py8nxbywbanc7d6vhsz153jjd45q"; depends=[edgeR limma pbmcapply]; }; - ROTS = derive2 { name="ROTS"; version="1.28.0"; sha256="0b2fl4wn696ia2kxihc6088ncnvd87ffq40bz58qi1bhq6krcmwv"; depends=[Biobase Rcpp]; }; - ROntoTools = derive2 { name="ROntoTools"; version="2.28.0"; sha256="1bfgm45lry0mr2ifkzwn6ah5xs3h1w6saka7dcvbaqwcsn2fnvr2"; depends=[boot graph KEGGgraph KEGGREST Rgraphviz]; }; - RPA = derive2 { name="RPA"; version="1.56.0"; sha256="1sw792qxmw3jkxwfh69swa9k9i368k5mb0y0vwn7xqhszrhx5a9m"; depends=[affy BiocGenerics BiocStyle phyloseq rmarkdown]; }; - RProtoBufLib = derive2 { name="RProtoBufLib"; version="2.12.1"; sha256="097nxjijblqyz6nbpal7292qfijmk7x8dbx7plryr132xbaw5hdm"; depends=[]; }; - RRHO = derive2 { name="RRHO"; version="1.40.0"; sha256="15dfy165yij16lj1nb4xf8vid4bljr6xhiywhhq893kmsshkbms8"; depends=[VennDiagram]; }; - RSVSim = derive2 { name="RSVSim"; version="1.40.0"; sha256="1wb1xhmnbhadadrscyjcrj9d5y51iczvxhawh0c9wrgd259m7s48"; depends=[Biostrings GenomicRanges IRanges ShortRead]; }; - RSeqAn = derive2 { name="RSeqAn"; version="1.20.0"; sha256="162gfmf2njx4hz5wd5i63acgkbffhlhrjk6sw3ph1l4s1zk19fpb"; depends=[Rcpp]; }; - RTCA = derive2 { name="RTCA"; version="1.52.0"; sha256="119kamvl0wa4rapy2xbi8bny9fdglivyq5nximncg42lbnp5ig30"; depends=[Biobase gtools RColorBrewer]; }; - RTCGA = derive2 { name="RTCGA"; version="1.30.0"; sha256="1y7ciq1270dc1c9y490fygrsylyzwl52fqi1vj7r75hy3rnwnv25"; depends=[assertthat data_table dplyr ggplot2 ggthemes htmltools knitr purrr RCurl rmarkdown rvest scales stringi survival survminer viridis XML xml2]; }; - RTCGAToolbox = derive2 { name="RTCGAToolbox"; version="2.30.0"; sha256="03p5rgjzc1265q60jkvk92vhcib5wdnv6bz997r70q9c39y03wm5"; depends=[BiocGenerics data_table DelayedArray GenomeInfoDb GenomicRanges httr RaggedExperiment RCircos RCurl RJSONIO rvest S4Vectors stringr SummarizedExperiment TCGAutils]; }; - RTN = derive2 { name="RTN"; version="2.24.0"; sha256="0m3baafrxq959ln751mhmb75m9dggwg4716r9piw4ii0bwc68gbh"; depends=[car data_table igraph IRanges limma minet mixtools pheatmap pwr RedeR S4Vectors snow SummarizedExperiment viper]; }; - RTNduals = derive2 { name="RTNduals"; version="1.24.0"; sha256="1kmndr9bd42rcdvkb5bcxnvx1k727bwhm9416lkbx0drri3zivh9"; depends=[RTN]; }; - RTNsurvival = derive2 { name="RTNsurvival"; version="1.24.0"; sha256="0ls0zsrzrq7njzhj8sz0qrbispqi24xdzg2hpajpwgw2jsq2bbij"; depends=[data_table dunn_test egg ggplot2 pheatmap RColorBrewer RTN RTNduals scales survival]; }; - RTopper = derive2 { name="RTopper"; version="1.46.0"; sha256="16y8fvwknsmyww37pxz60rag5k81wh76xiihn2lvd9xj3l2i9nha"; depends=[Biobase limma multtest]; }; - RUVSeq = derive2 { name="RUVSeq"; version="1.34.0"; sha256="0kxaaqf6py7kfndgpd0faxv6g610zj16pyvn9b4x9s3b22ib06j1"; depends=[Biobase EDASeq edgeR MASS]; }; - RUVcorr = derive2 { name="RUVcorr"; version="1.32.0"; sha256="112pqicgm94l53dr14g89d0ghrbg37qgqf0wcsvj4nb8x0anvc5b"; depends=[BiocParallel bladderbatch corrplot gridExtra lattice MASS psych reshape2 snowfall]; }; - RUVnormalize = derive2 { name="RUVnormalize"; version="1.34.0"; sha256="0z8paxn57rnfg1mk96dnm9zrxahbd2203rwgwj3kzjnily6b09wp"; depends=[Biobase RUVnormalizeData]; }; - RVS = derive2 { name="RVS"; version="1.22.0"; sha256="12219in1hcgrxb73m72cnsrd1723r85hyni2f2fhd595qw1bf3q8"; depends=[GENLIB gRain kinship2 snpStats]; }; - RadioGx = derive2 { name="RadioGx"; version="2.4.0"; sha256="18zqfnwjil4mv7fgh4wvnniyybmyqkg0hk2wc57rcn0mlppa3602"; depends=[assertthat Biobase BiocGenerics BiocParallel caTools CoreGx data_table downloader magicaxis matrixStats RColorBrewer reshape2 S4Vectors scales SummarizedExperiment]; }; - RaggedExperiment = derive2 { name="RaggedExperiment"; version="1.24.2"; sha256="0aa886mmk1c5h1i3xnk4niq4ylrawpsn2f62hwmfj5dsyl8a36ka"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix MatrixGenerics S4Vectors SummarizedExperiment]; }; - RandomWalkRestartMH = derive2 { name="RandomWalkRestartMH"; version="1.20.0"; sha256="0wm50c6677qycv30h1817babaxh97ggvbxhmk24y0dk63xkk4fh3"; depends=[dnet igraph Matrix]; }; - RankProd = derive2 { name="RankProd"; version="3.26.0"; sha256="1nhhmwskj8ssapnfnj8hxmdbxknnzgcgbrdw2pzcyyjchqr7n9nf"; depends=[gmp Rmpfr]; }; - RareVariantVis = derive2 { name="RareVariantVis"; version="2.28.0"; sha256="1q6bmmdc7jh1dacadww8pvhy1xd4wrk1v097irl34hw6p2pmd15d"; depends=[BiocGenerics BSgenome BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores googleVis gtools IRanges phastCons100way_UCSC_hg19 S4Vectors SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; - Rarr = derive2 { name="Rarr"; version="1.0.3"; sha256="0j8zc330qwzs40k90yg4adhs7prc2kyy2w4hn7rsq2vlcyxkgkam"; depends=[httr jsonlite paws_storage R_utils stringr]; }; - RbcBook1 = derive2 { name="RbcBook1"; version="1.68.0"; sha256="0w0iccrwrvyrpr04kcdsqa7shdq4frn2kllx77947zrzszhwb1a4"; depends=[Biobase graph rpart]; }; - Rbec = derive2 { name="Rbec"; version="1.8.0"; sha256="1acibbnkp3rv6mr4vi39ksc98fa0brcycxsq1zaz8mvd7vz3b6sq"; depends=[dada2 doParallel foreach ggplot2 Rcpp readr]; }; - Rbowtie = derive2 { name="Rbowtie"; version="1.40.0"; sha256="1hfr1zdvikvygzgyy58f5rnz5jkmsrhwa930h331wx5012hhmnv7"; depends=[]; }; - Rbowtie2 = derive2 { name="Rbowtie2"; version="2.6.0"; sha256="11h4irhi0pxd0l378im455amqfamqypyl0ri2cs8nk1lg184ridr"; depends=[magrittr Rsamtools]; }; - Rbwa = derive2 { name="Rbwa"; version="1.4.0"; sha256="0lmlgrgal9z2aphr9hh88ykzplr9vlvymp15vpky3gh1mkvpz4jh"; depends=[]; }; - RcisTarget = derive2 { name="RcisTarget"; version="1.20.0"; sha256="0dp2y85mfn995rvg698xnxlkz1kd8g0byjypxx62cpfldnkrinxl"; depends=[arrow AUCell BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges GSEABase R_utils S4Vectors SummarizedExperiment tibble]; }; - Rcollectl = derive2 { name="Rcollectl"; version="1.0.1"; sha256="0bl6gha8fjgvs9l3c5kajpha3yg4ciw309yvrbz0sv178ayycmzq"; depends=[ggplot2 lubridate processx]; }; - Rcpi = derive2 { name="Rcpi"; version="1.36.1"; sha256="1278xl1w6zbhlda0346swl259hafpnzkq65sxawa7b95xqs45k8i"; depends=[Biostrings doParallel foreach GOSemSim RCurl rjson rlang]; }; - Rcwl = derive2 { name="Rcwl"; version="1.16.0"; sha256="1ynpcyw85h9yzi4vwgwz6v8w9bm2hvfq189zrbl4cxn8ky62ywi3"; depends=[basilisk batchtools BiocParallel codetools DiagrammeR R_utils S4Vectors shiny yaml]; }; - RcwlPipelines = derive2 { name="RcwlPipelines"; version="1.16.0"; sha256="0pv1kkl0485vfmj41rp4c0ir5iw1hi9ifwhf4cfmyd4mv1ffzvqf"; depends=[BiocFileCache git2r httr rappdirs Rcwl S4Vectors]; }; - Rdisop = derive2 { name="Rdisop"; version="1.60.0"; sha256="02mj02sa9qxc6678irx7g3yzab4sa5sf4jkdjzsi9i6519xd7sa4"; depends=[Rcpp]; }; - ReQON = derive2 { name="ReQON"; version="1.46.0"; sha256="1knzla5d8n22121a9licrjh2rxrmh05304a9d4bs2f1r7aiwhgnh"; depends=[rJava Rsamtools seqbias]; }; - ReUseData = derive2 { name="ReUseData"; version="1.0.0"; sha256="0jbbbb5xhg5n1vibfr1sw0cxdq10qwhnqcdb8i78wq0qq11w71f7"; depends=[basilisk BiocFileCache jsonlite Rcwl RcwlPipelines S4Vectors yaml]; }; - ReactomeContentService4R = derive2 { name="ReactomeContentService4R"; version="1.8.0"; sha256="16fdvrkw41fffd4rca7mxnmr6bv27h2x6pc6bcahrv0riw0sfvq1"; depends=[data_table doParallel foreach httr jsonlite magick]; }; - ReactomeGSA = derive2 { name="ReactomeGSA"; version="1.14.0"; sha256="1ij9pkimy3jwg1fkvx0zcg5pd8fjy0j0nxyicg62qlqnd2567zp2"; depends=[dplyr ggplot2 gplots httr jsonlite progress RColorBrewer tidyr]; }; - ReactomeGraph4R = derive2 { name="ReactomeGraph4R"; version="1.8.0"; sha256="0bf6z1m5pdmaifa45bqkslkdsjvg7hsalj8aiqad831wd7s9x982"; depends=[data_table doParallel foreach getPass jsonlite magrittr neo4r purrr ReactomeContentService4R rlang]; }; - ReactomePA = derive2 { name="ReactomePA"; version="1.44.0"; sha256="1hy8qz7d2826kf6pkl3v8cjwx35ap8xr92jw5wv445p3xcd1clzn"; depends=[AnnotationDbi DOSE enrichplot ggplot2 ggraph graphite gson igraph reactome_db]; }; - ReadqPCR = derive2 { name="ReadqPCR"; version="1.46.0"; sha256="0i107z33vdhr69bwzmpfb8gqqfcv3aka87ws6dxg50xl2hx6ik3b"; depends=[Biobase]; }; - RedeR = derive2 { name="RedeR"; version="2.4.3"; sha256="1fsdd4n4012m9ala3v7jpazb4vzlyj3y8ykygxk267n31dlwk1qm"; depends=[igraph]; }; - RedisParam = derive2 { name="RedisParam"; version="1.2.0"; sha256="0y5pxh1fsksbhficl24zdi1kcjb88iw6yabj5adbkbx5da9mvymp"; depends=[BiocParallel futile_logger redux withr]; }; - RefPlus = derive2 { name="RefPlus"; version="1.70.0"; sha256="0ii4pki0gqsfcjlfwq5hx67yf0id2krrgs8qnss4gijj27m8h86m"; depends=[affy affyPLM Biobase preprocessCore]; }; - RegEnrich = derive2 { name="RegEnrich"; version="1.10.0"; sha256="09gkmna3w0x5m0mpq1llrqsrknlx2hncn74f4fksmx4r4mj0gphd"; depends=[BiocParallel BiocSet DESeq2 DOSE dplyr fgsea ggplot2 limma magrittr randomForest reshape2 S4Vectors SummarizedExperiment tibble WGCNA]; }; - RepViz = derive2 { name="RepViz"; version="1.16.0"; sha256="0ckwfln639bzqxzps4r1kgmc78j8ps308dxgmdf7jin925f48ybx"; depends=[biomaRt GenomicRanges IRanges Rsamtools S4Vectors]; }; - Repitools = derive2 { name="Repitools"; version="1.46.0"; sha256="1fx4vjssb9csqxxgqvpkj67gcr5daybk308h3hkgbgncqrb6v34s"; depends=[BiocGenerics Biostrings BSgenome cluster DNAcopy edgeR GenomeInfoDb GenomicAlignments GenomicRanges gplots gsmoothr IRanges MASS Ringo Rsamtools Rsolnp rtracklayer S4Vectors]; }; - ReportingTools = derive2 { name="ReportingTools"; version="2.39.0"; sha256="15h7vqdxfv7y0f82ff7a8brqnscs324x22izlkgjk2wqahnmr2l1"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category DESeq2 edgeR ggbio ggplot2 GOstats GSEABase hwriter IRanges knitr lattice limma PFAM_db R_utils XML]; }; - ResidualMatrix = derive2 { name="ResidualMatrix"; version="1.10.0"; sha256="1yay0i0nh2ax35ayqlpnmq0839syl5991hacyrbv3li3gqjc9qqv"; depends=[DelayedArray Matrix S4Vectors]; }; - Rfastp = derive2 { name="Rfastp"; version="1.10.0"; sha256="0c8nx0binn20vnxgsdpbc9lnjbc7j78f91ylgzwjw5ji4jfrzzhs"; depends=[ggplot2 Rcpp reshape2 Rhtslib rjson zlibbioc]; }; - RgnTX = derive2 { name="RgnTX"; version="1.2.0"; sha256="150cyydkhp606l6a9h05h5lxir6jqxh40n7r9r4b3yiizlvnkvbp"; depends=[GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges regioneR S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene]; }; - Rgraphviz = derive2 { name="Rgraphviz"; version="2.44.0"; sha256="1dv1vk73achjz5b5zzw2d517nbjfrlj7gppd48pfhk1w0mvz3q61"; depends=[graph]; }; - Rhdf5lib = derive2 { name="Rhdf5lib"; version="1.22.1"; sha256="1007i2rzz86k04kswa4h53p8zzh52k31m9d8im6iw0n91inqbcj9"; depends=[]; }; - Rhisat2 = derive2 { name="Rhisat2"; version="1.16.0"; sha256="1x9phnrk27v2r3ldqa9cd6yp2q3y5p2rm9wmra3wgrmhz9gxq1qy"; depends=[GenomicFeatures GenomicRanges SGSeq]; }; - Rhtslib = derive2 { name="Rhtslib"; version="2.2.0"; sha256="1p8imns26knh21r254n7i9xvy8xzz3zizx0kq4si7cdaf2b4xayi"; depends=[zlibbioc]; }; - RiboCrypt = derive2 { name="RiboCrypt"; version="1.6.0"; sha256="0dkdb5kmdgcg8l7l1dd1myx06sdvl7bvahqq1b5q7xz69vnslrfc"; depends=[BiocGenerics BiocParallel Biostrings bslib data_table dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 htmlwidgets httr IRanges jsonlite knitr markdown NGLVieweR ORFik plotly RCurl rlang shiny shinycssloaders shinyhelper shinyjqui stringr]; }; - RiboDiPA = derive2 { name="RiboDiPA"; version="1.8.0"; sha256="143wv4dh3npxv7r638hqw0l3p391jlw3frf8q03grmdyl357z5n1"; depends=[BiocFileCache BiocGenerics data_table DESeq2 doParallel elitism foreach GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges matrixStats qvalue Rcpp reldist Rsamtools S4Vectors]; }; - RiboProfiling = derive2 { name="RiboProfiling"; version="1.30.0"; sha256="0qgzq82v4glkc0krk81zj9z71cnrvflsf1w45r9zmaw6bq45rfqd"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr reshape2 Rsamtools rtracklayer S4Vectors sqldf]; }; - Ringo = derive2 { name="Ringo"; version="1.64.0"; sha256="0dfzj4v0js9hv0dm0nld9mmjgn5gwhiiq171862afwwx4g8li4x9"; depends=[Biobase BiocGenerics genefilter lattice limma Matrix RColorBrewer vsn]; }; - Risa = derive2 { name="Risa"; version="1.42.0"; sha256="0xcnqhw6sw9w4rqm3a22y445iikhvi5zzdckpzsqcm3nhzzbkj3d"; depends=[affy Biobase biocViews Rcpp xcms]; }; - Rmagpie = derive2 { name="Rmagpie"; version="1.56.0"; sha256="1v5m9r54hz92s3lw3z5xmkwd9v9p4gih0im5wf4gvk4d3d5mwjcy"; depends=[Biobase e1071 kernlab pamr]; }; - Rmmquant = derive2 { name="Rmmquant"; version="1.18.0"; sha256="10161ap6kim55ck9lskr0xf9ydzz75bwxqbiw66chzzj5apxcs6d"; depends=[apeglm BiocStyle DESeq2 devtools GenomicRanges org_Mm_eg_db Rcpp S4Vectors SummarizedExperiment TBX20BamSubset TxDb_Mmusculus_UCSC_mm9_knownGene]; }; - RnBeads = derive2 { name="RnBeads"; version="2.18.1"; sha256="1l4wi816fmgvg81dzgwcbd3065b315k7kxx4hkhz9228ya07z61x"; depends=[BiocGenerics cluster ff fields GenomicRanges ggplot2 gplots gridExtra illuminaio IRanges limma MASS matrixStats methylumi plyr S4Vectors]; }; - RnaSeqSampleSize = derive2 { name="RnaSeqSampleSize"; version="2.10.0"; sha256="1qir074hi6x1ay8j3j6x2q9d2glkqlgygmi3bhdc8sjacxws8dna"; depends=[biomaRt dplyr edgeR ggplot2 ggpubr heatmap3 KEGGREST matlab Rcpp recount RnaSeqSampleSizeData SummarizedExperiment tidyr tidyselect]; }; - Rnits = derive2 { name="Rnits"; version="1.34.0"; sha256="1bg46ky6fbvjsvv23cl1mh2m29c8k9xzpc4hcbryfrb9mgy6rpir"; depends=[affy Biobase boot ggplot2 impute limma qvalue reshape2]; }; - RolDE = derive2 { name="RolDE"; version="1.4.0"; sha256="000sy02xrnlaiac1ivdynzsmi809gfwbkhqrwlvyzyi6njixnqxj"; depends=[doParallel doRNG foreach matrixStats nlme qvalue rngtools ROTS SummarizedExperiment]; }; - Rqc = derive2 { name="Rqc"; version="1.34.0"; sha256="15w5bmcl7h3fz6qhdqz4qc3qkg3pxcmzapg4mnnckzmyg8kh0i4l"; depends=[BiocGenerics BiocParallel BiocStyle Biostrings biovizBase GenomicAlignments GenomicFiles ggplot2 IRanges knitr markdown plyr Rcpp reshape2 Rsamtools S4Vectors shiny ShortRead]; }; - Rsamtools = derive2 { name="Rsamtools"; version="2.16.0"; sha256="18kh6vmyjmv7zklqr5ifpfixjwldxgwj550c69mqfkk7m0zk52cl"; depends=[BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicRanges IRanges Rhtslib S4Vectors XVector zlibbioc]; }; - Rsubread = derive2 { name="Rsubread"; version="2.14.2"; sha256="1dgbvhsd0rki1skwrb4acd3cfy7c9slsjq1s7r2469zbs3xf12xc"; depends=[Matrix]; }; - Rtpca = derive2 { name="Rtpca"; version="1.10.0"; sha256="0wwrnkbzvdwayvw1x89jiknwsg95ijy0hik7lrp5k1qwm49w4dvl"; depends=[Biobase dplyr fdrtool ggplot2 pROC tibble tidyr]; }; - Rtreemix = derive2 { name="Rtreemix"; version="1.62.0"; sha256="04glj66rf1jcy4qychjg5j2ssvk8g8zc15493a9l8b63m1ws06g3"; depends=[Biobase graph Hmisc]; }; - S4Arrays = derive2 { name="S4Arrays"; version="1.0.6"; sha256="011n4lyznlrya5l8d7m30x81k7h81wbp07b12s6a4s5sy9fzd5jb"; depends=[abind BiocGenerics crayon IRanges Matrix S4Vectors]; }; - S4Vectors = derive2 { name="S4Vectors"; version="0.38.2"; sha256="0n1w451647pxii6qrrxbvdi9z6rqdwibczkbs7k7a9j33bv3nqv8"; depends=[BiocGenerics]; }; - SAIGEgds = derive2 { name="SAIGEgds"; version="2.0.1"; sha256="0v1zfyvx3852kidh7hiyh1al86gs5v0dkx9laj8182pwsjy4qnys"; depends=[gdsfmt Matrix Rcpp RcppArmadillo RcppParallel SeqArray]; }; - SANTA = derive2 { name="SANTA"; version="2.36.0"; sha256="0knc7lxlcjh9j144j7kirsknkk8qszmmjwg59v3050pi79m0czr9"; depends=[igraph Matrix]; }; - SBGNview = derive2 { name="SBGNview"; version="1.14.0"; sha256="0krfmwdx2f849nsbhck5p2vgfrvqh0xb1pb4vx4rapdrvc1fpihg"; depends=[AnnotationDbi bookdown httr igraph KEGGREST knitr pathview Rdpack rmarkdown rsvg SBGNview_data SummarizedExperiment xml2]; }; - SBMLR = derive2 { name="SBMLR"; version="1.96.0"; sha256="148r41f60hm7w1zr2971zqa4rsbjcyfdna19bm9nh9gpyk950zm2"; depends=[deSolve XML]; }; - SC3 = derive2 { name="SC3"; version="1.28.3"; sha256="1qp6596vhwfl6mmgnr2777mw153yvf60nlmvdvm71qpivli1psm6"; depends=[BiocGenerics cluster doParallel doRNG e1071 foreach ggplot2 pheatmap Rcpp RcppArmadillo robustbase ROCR rrcov S4Vectors shiny SingleCellExperiment SummarizedExperiment WriteXLS]; }; - SCAN_UPC = derive2 { name="SCAN.UPC"; version="2.42.0"; sha256="1k9qzh1bk555ax1mm8w0r4rcvwaw5x1gyrzkamhgkh48m9abp6sq"; depends=[affy affyio Biobase Biostrings foreach GEOquery IRanges MASS oligo sva]; }; - SCANVIS = derive2 { name="SCANVIS"; version="1.14.0"; sha256="07i481wk0v16r5bqjvmnys6cbd228hgzb6sp1975q595y5s76gnz"; depends=[IRanges plotrix RCurl rtracklayer]; }; - SCATE = derive2 { name="SCATE"; version="1.10.0"; sha256="1fkswn9xlbr4mrnr62yzk51dri7rzbvf28whh7qhdfxgyvavw439"; depends=[GenomicAlignments GenomicRanges mclust preprocessCore Rtsne SCATEData splines2 xgboost]; }; - SCArray = derive2 { name="SCArray"; version="1.8.4"; sha256="1svvq0ic6hlqi86lch3q5n4d71mxkq102x01nc3fgpf0bcv8rsaf"; depends=[BiocParallel BiocSingular DelayedArray DelayedMatrixStats gdsfmt Matrix S4Vectors SingleCellExperiment SummarizedExperiment]; }; - SCArray_sat = derive2 { name="SCArray.sat"; version="1.0.3"; sha256="160x7wps2y4w8i0z97q8bgq0k8dih9axshha7wi6sx8j3qf6ab71"; depends=[BiocGenerics BiocParallel BiocSingular DelayedArray gdsfmt S4Vectors SCArray Seurat SeuratObject SummarizedExperiment]; }; - SCBN = derive2 { name="SCBN"; version="1.18.0"; sha256="1b3hhj4lsafkrb86sr937vwjhymarxgx97bj3y51jg7jpqfi6gnr"; depends=[]; }; - SCFA = derive2 { name="SCFA"; version="1.10.0"; sha256="1c9z8axz0vkcfq2il4qnqzjg9qklwsf4ijwb29kn711p96anfgw7"; depends=[BiocParallel cluster coro glmnet igraph Matrix matrixStats psych RhpcBLASctl survival torch]; }; - SCOPE = derive2 { name="SCOPE"; version="1.12.0"; sha256="1hjj7zbfss456awpc2w2vn9mhvvnfri80rchn90l9niwb6w8mn37"; depends=[BiocGenerics Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 DescTools DNAcopy doParallel foreach GenomeInfoDb GenomicRanges gplots IRanges RColorBrewer Rsamtools S4Vectors]; }; - SCnorm = derive2 { name="SCnorm"; version="1.22.0"; sha256="13s3jhmgig7ddy3kzm8403n968h7g31rhz4jqgr740p1r4gq4gqq"; depends=[BiocGenerics BiocParallel cluster data_table forcats ggplot2 moments quantreg S4Vectors SingleCellExperiment SummarizedExperiment]; }; - SDAMS = derive2 { name="SDAMS"; version="1.20.0"; sha256="14c5mnhfi8qi1damf6vqr9xmkay06y1rvrr03s8bm0mf4rgs0w6w"; depends=[qvalue SummarizedExperiment trust]; }; - SELEX = derive2 { name="SELEX"; version="1.32.0"; sha256="0wwbwyvmqakp3z9hgcp5wqih2zxvxxpvfczlxx3f7v11rc3mkabx"; depends=[Biostrings rJava]; }; - SEPIRA = derive2 { name="SEPIRA"; version="1.20.0"; sha256="1yhlm6l9jv8fhdhnhpj7r8cdpnrp1la287x85gcssqjnv5v4k047"; depends=[corpcor limma]; }; - SEtools = derive2 { name="SEtools"; version="1.14.0"; sha256="1j47l51blld3ph764ydxdr25x1k8ji4w2947l172gw8k7adb99ah"; depends=[BiocParallel circlize data_table DESeq2 edgeR Matrix openxlsx pheatmap S4Vectors sechm SummarizedExperiment sva]; }; - SGCP = derive2 { name="SGCP"; version="1.0.0"; sha256="1c0nghxb55v12d1sn2rhgw5bfifpishmf08dxyj07zmnn52nca4d"; depends=[annotate caret DescTools dplyr expm genefilter ggplot2 ggridges GO_db GOstats graph openxlsx org_Hs_eg_db plyr RColorBrewer reshape2 Rgraphviz RSpectra SummarizedExperiment xtable]; }; - SGSeq = derive2 { name="SGSeq"; version="1.34.0"; sha256="0qsmy85400in2xvw3bnzjnk8ni3lipqjc81npk3fmvbp6cb85njq"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges igraph IRanges Rsamtools rtracklayer RUnit S4Vectors SummarizedExperiment]; }; - SIAMCAT = derive2 { name="SIAMCAT"; version="2.4.0"; sha256="0qy1gp57p35rqsr2ds3j23vlnsdpca1krzqc2chyn4ar92xmxyl7"; depends=[beanplot corrplot glmnet gridBase gridExtra infotheo lgr LiblineaR lmerTest matrixStats mlr3 mlr3learners mlr3tuning paradox phyloseq pROC progress PRROC RColorBrewer scales stringr]; }; - SICtools = derive2 { name="SICtools"; version="1.30.0"; sha256="1y6gwynsmgc2z0m943cz2rph3wydhi1rgqrg0aaqzn4dsxbj5h23"; depends=[Biostrings doParallel GenomicRanges IRanges matrixStats plyr Rsamtools stringr]; }; - SIM = derive2 { name="SIM"; version="1.70.0"; sha256="0jg30rc5qar6gdnailqcpsy8wywll3fli12if6364507qfsgvxnf"; depends=[globaltest quantreg quantsmooth]; }; - SIMAT = derive2 { name="SIMAT"; version="1.32.0"; sha256="17p3bcgp830y6kpaq7mk5pjhs7kw0ki0z85aq7ar9z9flg9ayg90"; depends=[ggplot2 mzR Rcpp reshape2]; }; - SIMD = derive2 { name="SIMD"; version="1.18.0"; sha256="0r3xlrsc7xlv3crr1k0vry55cvy96mcci7n0ycf28m8wvbfiy1j2"; depends=[edgeR methylMnM statmod]; }; - SIMLR = derive2 { name="SIMLR"; version="1.26.1"; sha256="157q72666akvs3rdh46p8858hxrjnarwnc7k3hkawjx45v20sdj8"; depends=[Matrix pracma Rcpp RcppAnnoy RSpectra]; }; - SISPA = derive2 { name="SISPA"; version="1.30.0"; sha256="0glqk2p06brw9a9prccil02z82nhq2izh2sgfrlmi1kpf8mgszl3"; depends=[changepoint data_table genefilter ggplot2 GSVA plyr]; }; - SLqPCR = derive2 { name="SLqPCR"; version="1.66.0"; sha256="0lm6inhwnzsnhs33q2fv29phw8pvlv9h0qpq4yspsin3yxzfvmzy"; depends=[]; }; - SMAD = derive2 { name="SMAD"; version="1.16.0"; sha256="0wmwlfxc6rhm6xl5bi99449wlal14q813zy37zc8cb5x4qdir4hx"; depends=[dplyr magrittr Rcpp RcppAlgos tidyr]; }; - SMAP = derive2 { name="SMAP"; version="1.64.0"; sha256="0f1bs2njagzjvkyl0s8l71hcajh9w5drjmi7s58cjf9jpnpb07jv"; depends=[]; }; - SMITE = derive2 { name="SMITE"; version="1.28.0"; sha256="060mkzi37b6hzicy0akp761gp0r0jkpbfmv8p0ln4g4yz8q4qx4k"; depends=[AnnotationDbi Biobase BioNet geneLenDataBase GenomicRanges ggplot2 goseq Hmisc igraph IRanges KEGGREST org_Hs_eg_db plyr reactome_db S4Vectors scales]; }; - SNAGEE = derive2 { name="SNAGEE"; version="1.40.0"; sha256="0xdsfc5p43h4hf4n06npzgghc52y2zsn9g4g2s1fjqpmsqq6lbcn"; depends=[SNAGEEdata]; }; - SNPRelate = derive2 { name="SNPRelate"; version="1.34.1"; sha256="0js932qvhlwmnrr2jfvsch2zm6w6a1z5wydns3r1bw24r817dlgh"; depends=[gdsfmt]; }; - SNPediaR = derive2 { name="SNPediaR"; version="1.26.0"; sha256="0pyz7dqn1mzgy8wp6d66mh8am0hgz67ycwgz885wgbv4i38zcbqd"; depends=[jsonlite RCurl]; }; - SNPhood = derive2 { name="SNPhood"; version="1.30.0"; sha256="1c0hmq0z34446fxha6y89x5l5sfn2maal30n9hanxpq5v5v12vvh"; depends=[BiocGenerics BiocParallel Biostrings checkmate cluster data_table DESeq2 GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges lattice RColorBrewer reshape2 Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; - SOMNiBUS = derive2 { name="SOMNiBUS"; version="1.7.0"; sha256="19damf0rhq01gb7b1bjsivp28b57jq36zhry960yfahg09d13bqv"; depends=[Matrix mgcv VGAM]; }; - SPEM = derive2 { name="SPEM"; version="1.40.0"; sha256="1475dl8dg1xiblvsk82infkhirmk9zjznrkvk1a3brlhs5cf1lq8"; depends=[Biobase Rsolnp]; }; - SPIA = derive2 { name="SPIA"; version="2.52.0"; sha256="1f0d12y9al89c669y5c7byjgyml33jnn6s9iq1gcxm73ac6ws067"; depends=[KEGGgraph]; }; - SPIAT = derive2 { name="SPIAT"; version="1.2.3"; sha256="08qgy0lbh7zz0mcf7qfv9y570wwm4a2118adjmq9nraszc27wch3"; depends=[apcluster dbscan dittoSeq dplyr ggplot2 gridExtra gtools mmand pracma RANN raster reshape2 rlang sp SpatialExperiment spatstat_explore spatstat_geom SummarizedExperiment tibble vroom]; }; - SPLINTER = derive2 { name="SPLINTER"; version="1.26.0"; sha256="1wh0msqbfnbygf1wjkryj8yx5f1c0w1hs5mmk8sky0sn0g32r7l4"; depends=[biomaRt Biostrings BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 googleVis Gviz IRanges plyr S4Vectors seqLogo stringr]; }; - SPONGE = derive2 { name="SPONGE"; version="1.22.0"; sha256="1ayvigqj5j7s7031gpyhaz3m3z85w9j8j850pggshy9gixvy1mnp"; depends=[Biobase biomaRt caret ComplexHeatmap cvms data_table doRNG dplyr expm foreach ggplot2 ggpubr ggridges glmnet gRbase igraph iterators logging MASS MetBrewer miRBaseConverter ppcor randomForest rlang stringr tidyr tidyverse tnet]; }; - SPOTlight = derive2 { name="SPOTlight"; version="1.4.1"; sha256="1z3mprlj6fvz90mra2gfaxgfi2k7mr98w0q11js47hqbymm436wx"; depends=[ggplot2 Matrix matrixStats NMF nnls SingleCellExperiment]; }; - SPsimSeq = derive2 { name="SPsimSeq"; version="1.10.0"; sha256="12nw0954blkaf7hga26z5bi540kiwqwmfagsplk3kgavgarrnxsb"; depends=[edgeR fitdistrplus Hmisc limma mvtnorm phyloseq SingleCellExperiment WGCNA]; }; - SQLDataFrame = derive2 { name="SQLDataFrame"; version="1.14.0"; sha256="1gb2hv2j2a12cyvc5bh448764qgs4b4maqyqgs78plwh8038i5kp"; depends=[BiocGenerics DBI dbplyr dplyr lazyeval RSQLite S4Vectors tibble]; }; - SQUADD = derive2 { name="SQUADD"; version="1.50.0"; sha256="095xp24ka9z6jn7am5a5c194i06ifp37vgll8b6xnrgj6b7xv4fq"; depends=[RColorBrewer]; }; - SRAdb = derive2 { name="SRAdb"; version="1.62.0"; sha256="0jx5gxymv1rb1xgvyypsib3iss7002r40baa4s7ycj30l3cvj0s4"; depends=[GEOquery graph RCurl RSQLite]; }; - STATegRa = derive2 { name="STATegRa"; version="1.36.0"; sha256="0nwz74s4an91lbwxp0jnm9z2nqp9k8zh8b3g5bdw6csqkxs14w5m"; depends=[affy Biobase calibrate edgeR foreach ggplot2 gplots gridExtra limma MASS]; }; - STRINGdb = derive2 { name="STRINGdb"; version="2.12.1"; sha256="1c0m9k3gjmj160k8xyj2r60lpx4qgp7xibljfg8ljxr33f8aqyaz"; depends=[gplots hash igraph plotrix plyr png RColorBrewer RCurl sqldf]; }; - STROMA4 = derive2 { name="STROMA4"; version="1.24.0"; sha256="1x3zgxkcck8ffh89mql45cp54c94n64kf9x6dan9wl24bj3x869f"; depends=[Biobase BiocParallel cluster matrixStats]; }; - STdeconvolve = derive2 { name="STdeconvolve"; version="1.4.0"; sha256="0r8zgld3dik1v2b6yg7vsd0x92c0svfhlc47g50nb34ifjhxksyn"; depends=[BiocParallel clue ggplot2 liger Matrix mgcv reshape2 scatterpie slam topicmodels viridis]; }; - SUITOR = derive2 { name="SUITOR"; version="1.2.0"; sha256="1lksk6nb9gk88mmx0f053h5n76657yxbajddrrjz2q4happ2sd1l"; depends=[BiocParallel ggplot2]; }; - SVMDO = derive2 { name="SVMDO"; version="1.0.0"; sha256="0kwsmmga6a6bv4clhpqa0pzfxhl48y61zca8bghvcwcnrrn97j1k"; depends=[AnnotationDbi BSDA caret caTools data_table DOSE dplyr e1071 golem klaR nortest org_Hs_eg_db shiny shinyFiles shinytitle sjmisc SummarizedExperiment survival]; }; - SWATH2stats = derive2 { name="SWATH2stats"; version="1.30.1"; sha256="0hkdrhfadygb7qlzgh43g7z87b1ysz7mipxf1h8h7324vmdcf00q"; depends=[biomaRt data_table ggplot2 reshape2]; }; - SamSPECTRAL = derive2 { name="SamSPECTRAL"; version="1.54.0"; sha256="0a2l3c4hslsw69ikzbmd96iamcsq7aji2lmzq5mnm4vnw1kqf4aq"; depends=[]; }; - Scale4C = derive2 { name="Scale4C"; version="1.22.0"; sha256="0q78jzcn2xr2xfb8r0grcc2yb94xn0f6f7lxk4zzghy22isvx7b4"; depends=[GenomicRanges IRanges smoothie SummarizedExperiment]; }; - ScaledMatrix = derive2 { name="ScaledMatrix"; version="1.8.1"; sha256="0xhw77w28r3agv0hw7fjpn1fp2p9bz7kdzwzx7gsa8411nffmd4d"; depends=[DelayedArray Matrix S4Vectors]; }; - Sconify = derive2 { name="Sconify"; version="1.20.0"; sha256="0n60dx38bd4b3grf27lwgfhwi9x2jsx72rsxry2gdaxgg05vkma7"; depends=[dplyr flowCore FNN ggplot2 magrittr readr Rtsne tibble]; }; - ScreenR = derive2 { name="ScreenR"; version="1.2.0"; sha256="1y6pw0h53ybfk4fnsncd7kqil0f3k51j6zdkbprz7kmgsrc3q35r"; depends=[dplyr edgeR ggplot2 ggvenn limma magrittr patchwork purrr rlang scales stringr tibble tidyr tidyselect]; }; - SemDist = derive2 { name="SemDist"; version="1.34.0"; sha256="0w3cjw71p1azkjsw3yziy7gjpbr84bdx6jfjz5vkcgxmy0f86hz8"; depends=[annotate AnnotationDbi GO_db]; }; - SeqArray = derive2 { name="SeqArray"; version="1.40.1"; sha256="1771vk23psjavvi1nf2z8i2xawygdh4amawlijnskci8y9w4x5dm"; depends=[Biostrings gdsfmt GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - SeqGSEA = derive2 { name="SeqGSEA"; version="1.40.0"; sha256="1881wf18lvhy2f3xyrfmnbcyra6z9c77lbbvvcv45j97ncw17d96"; depends=[Biobase biomaRt DESeq2 doParallel]; }; - SeqGate = derive2 { name="SeqGate"; version="1.10.0"; sha256="1v37dyz96zcgs0h44drkqw832zc90r37clk1yjhsm8m1ri59gdsh"; depends=[BiocManager GenomicRanges S4Vectors SummarizedExperiment]; }; - SeqSQC = derive2 { name="SeqSQC"; version="1.22.0"; sha256="1s9qmvz8zhg90bz7dyp0cfk354plqx7kydjafbngg4vksbm1grg7"; depends=[e1071 ExperimentHub gdsfmt GenomicRanges GGally ggplot2 IRanges rbokeh RColorBrewer reshape2 rmarkdown S4Vectors SNPRelate]; }; - SeqVarTools = derive2 { name="SeqVarTools"; version="1.38.0"; sha256="0qs67mdnw2kl45610nldsq40smy0hg5h8mndjvqvjynwkj9xjk0a"; depends=[Biobase BiocGenerics data_table gdsfmt GenomicRanges GWASExactHW IRanges logistf Matrix S4Vectors SeqArray]; }; - SharedObject = derive2 { name="SharedObject"; version="1.14.1"; sha256="0jlkkb6w237ym5jnn9i5j3swiq8x37fkq3flgf8g1svzxy9icvga"; depends=[BH BiocGenerics Rcpp]; }; - ShortRead = derive2 { name="ShortRead"; version="1.58.0"; sha256="0wpr3ksr7j5yk6m1zaa47dwdgznajsz8as4p9vf7schaqvhq1wc4"; depends=[Biobase BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges hwriter IRanges lattice latticeExtra Rhtslib Rsamtools S4Vectors XVector zlibbioc]; }; - SiPSiC = derive2 { name="SiPSiC"; version="1.0.2"; sha256="1q79vbfj65ndyb9qb0bdk5zzasvg991p4069akvn07z863fhwnrs"; depends=[Matrix SingleCellExperiment]; }; - SigCheck = derive2 { name="SigCheck"; version="2.32.1"; sha256="0lv75kj0h84ri0advwr6sm2mdsgpd7pkql34nsmar11xxks5bwbf"; depends=[Biobase BiocParallel e1071 MLInterfaces survival]; }; - SigFuge = derive2 { name="SigFuge"; version="1.38.0"; sha256="1nn124y33bvw77ylz9dykrd43089ajghmd74f7wzhn6sfmjisd2f"; depends=[GenomicRanges ggplot2 matlab reshape sigclust]; }; - SigsPack = derive2 { name="SigsPack"; version="1.14.0"; sha256="03sqv0jp9539qmjb81avi8l93r25r5gsqfwzqgfpdg8d5anh7lp3"; depends=[Biobase Biostrings BSgenome GenomeInfoDb GenomicRanges quadprog rtracklayer SummarizedExperiment VariantAnnotation]; }; - SimBindProfiles = derive2 { name="SimBindProfiles"; version="1.38.0"; sha256="0z53dyrkbawbj8f01gf58cljz7vsvc9dd3jfhvvc2mfxfm0bfrl1"; depends=[Biobase limma mclust Ringo]; }; - SimBu = derive2 { name="SimBu"; version="1.2.0"; sha256="1705nmf438rfbpjwy6bcc7hmkpf7vnp5b7d9ckinqbh5i2nnipl0"; depends=[basilisk BiocParallel data_table dplyr ggplot2 Matrix phyloseq proxyC RColorBrewer RCurl reticulate sparseMatrixStats SummarizedExperiment tidyr]; }; - SimFFPE = derive2 { name="SimFFPE"; version="1.12.0"; sha256="18g38n3nlihxpfh4rz1cfjw8x7xyxivpcqr1my77ljxprs6vzl6z"; depends=[Biostrings doParallel dplyr foreach GenomicRanges IRanges Rsamtools truncnorm]; }; - SingleCellExperiment = derive2 { name="SingleCellExperiment"; version="1.22.0"; sha256="1v2px6gvr0wzj2cyml57hxj5ghynlvizkchbywd3kx05j1h2mckd"; depends=[BiocGenerics DelayedArray GenomicRanges S4Vectors SummarizedExperiment]; }; - SingleCellSignalR = derive2 { name="SingleCellSignalR"; version="1.12.0"; sha256="1zp38591wcidn2b6jj306vvnr6jaahf8cz3npj47rvwdm1n69643"; depends=[BiocManager circlize data_table edgeR foreach gplots igraph limma multtest pheatmap Rtsne scran stringr]; }; - SingleMoleculeFootprinting = derive2 { name="SingleMoleculeFootprinting"; version="1.8.0"; sha256="1gminz2ihxmbqij1drhhj9bfwjlfp5611q7advppq9n9nwnr18ba"; depends=[BiocGenerics Biostrings BSgenome data_table GenomeInfoDb GenomicRanges IRanges plyr QuasR RColorBrewer]; }; - SingleR = derive2 { name="SingleR"; version="2.2.0"; sha256="0dwlg86wkivsag5ffjk81nlq34lwl3kk065k9l6lak24ziq6c4ij"; depends=[beachmat BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats Matrix Rcpp S4Vectors SummarizedExperiment]; }; - SomaticSignatures = derive2 { name="SomaticSignatures"; version="2.36.0"; sha256="075w88x7lv2fkp2ipqgxp4pzh6kbjw3nmp0qra2p4fss4j3g8d6s"; depends=[Biobase Biostrings GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges NMF pcaMethods proxy reshape2 S4Vectors VariantAnnotation]; }; - SpacePAC = derive2 { name="SpacePAC"; version="1.38.0"; sha256="0l6drsrxk2fxhq5dk0186z6mbc7hvyng4116y5fc8j9kxjc0rfna"; depends=[iPAC]; }; - Spaniel = derive2 { name="Spaniel"; version="1.14.0"; sha256="17b8gfyalb0hfrpv4islkvjg8d06nff79zkyl261bg51dydv2cfw"; depends=[dplyr DropletUtils ggplot2 igraph jpeg jsonlite magrittr png S4Vectors scater scran Seurat shiny SingleCellExperiment SummarizedExperiment]; }; - SparseArray = derive2 { name="SparseArray"; version="1.0.12"; sha256="1rgxr087paqxv8q5say8zvhqm4znav6vb6ic5jyskq8bxm7ih10f"; depends=[BiocGenerics IRanges Matrix MatrixGenerics matrixStats S4Arrays S4Vectors XVector]; }; - SparseSignatures = derive2 { name="SparseSignatures"; version="2.10.0"; sha256="0bqwhhcsj72a4ci0j6k5bc4rm6q8vlhmhp1h3il73imj7lkdll6z"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges NMF nnlasso nnls reshape2]; }; - SpatialCPie = derive2 { name="SpatialCPie"; version="1.16.0"; sha256="1qli4hcpjxq5q1c6j08sc251d39phzrgc999zq1splzsnkbprq9s"; depends=[colorspace data_table digest dplyr ggforce ggiraph ggplot2 ggrepel igraph lpSolve purrr readr rlang shiny shinycssloaders shinyjs shinyWidgets SummarizedExperiment tibble tidyr tidyselect zeallot]; }; - SpatialDecon = derive2 { name="SpatialDecon"; version="1.10.0"; sha256="0x3m60a93l4sg4nggnsdysxqaji8wy6rvncvhq4z67zzax5sj8ia"; depends=[Biobase GeomxTools logNormReg Matrix repmis SeuratObject]; }; - SpatialExperiment = derive2 { name="SpatialExperiment"; version="1.10.0"; sha256="18fcfyjvp9nzadlicsnz62wva8ik0z6jqg1b906avm2vk6rbxw70"; depends=[BiocFileCache BiocGenerics DropletUtils magick rjson S4Vectors SingleCellExperiment SummarizedExperiment]; }; - SpatialFeatureExperiment = derive2 { name="SpatialFeatureExperiment"; version="1.2.3"; sha256="1w8m05iqdw0b2xfsn5sjccj2h4kx14zxv44gw2f1sy77sslzpmy0"; depends=[BiocGenerics BiocNeighbors BiocParallel Matrix rjson rlang S4Vectors sf SingleCellExperiment SpatialExperiment spdep SummarizedExperiment terra]; }; - SpatialOmicsOverlay = derive2 { name="SpatialOmicsOverlay"; version="1.0.0"; sha256="10w8caqjiqsrjxzkxa8a3ngzar2kbax73rcyjgb6f2kwjmxxij3i"; depends=[base64enc Biobase BiocFileCache data_table dplyr EBImage GeomxTools ggplot2 ggtext magick pbapply plotrix RBioFormats readxl S4Vectors scattermore stringr XML]; }; - SpeCond = derive2 { name="SpeCond"; version="1.54.0"; sha256="164hks3bz5yszhq3dkdaxwggp4pdyg5k1yypkagd6myd5h5hg5nn"; depends=[Biobase fields hwriter mclust RColorBrewer]; }; - Spectra = derive2 { name="Spectra"; version="1.10.3"; sha256="1fx6xkl29frfk8bzz5jvr1cn0hjyi46ck23izb1cypiag4lsrf8v"; depends=[BiocGenerics BiocParallel fs IRanges MsCoreUtils ProtGenerics S4Vectors]; }; - SpectralTAD = derive2 { name="SpectralTAD"; version="1.16.1"; sha256="0l49fwr038ic2k87fxcjwdlwjd49wyywxjsa2d6ffncwmgaqrpc2"; depends=[BiocParallel cluster dplyr GenomicRanges HiCcompare magrittr Matrix PRIMME]; }; - SpidermiR = derive2 { name="SpidermiR"; version="1.30.0"; sha256="00p98wvj56v70gdc14wbbjgcvmpxn8ckb4zh8lbjdiplsn815g31"; depends=[AnnotationDbi gdata httr igraph miRNAtap miRNAtap_db org_Hs_eg_db]; }; - SpliceWiz = derive2 { name="SpliceWiz"; version="1.2.3"; sha256="10sg5hfcfrcgk73ymmqpx0xx2slfcdwaxj70yq4312dijy3gk9x7"; depends=[AnnotationHub BiocFileCache BiocGenerics BiocParallel Biostrings BSgenome data_table DelayedArray DelayedMatrixStats DT fst genefilter GenomeInfoDb GenomicRanges ggplot2 HDF5Array heatmaply htmltools IRanges magrittr matrixStats NxtIRFdata ompBAM patchwork pheatmap plotly progress R_utils RColorBrewer Rcpp RcppProgress rhandsontable rhdf5 rtracklayer rvest S4Vectors scales shiny shinydashboard shinyFiles shinyWidgets stringi SummarizedExperiment zlibbioc]; }; - SplicingFactory = derive2 { name="SplicingFactory"; version="1.8.0"; sha256="0mpbk29l17rnddn409nciz9jm15199082hixcs6dbxyc6gpl0vj8"; depends=[SummarizedExperiment]; }; - SplicingGraphs = derive2 { name="SplicingGraphs"; version="1.40.0"; sha256="0lcx7q5anv04flv4fjaqz0rw0xazx5q25xjq4fq2zm0syyxa5p2z"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph igraph IRanges Rgraphviz Rsamtools S4Vectors]; }; - SpotClean = derive2 { name="SpotClean"; version="1.2.0"; sha256="1q81xmn56b8cvlnn7kzjm3qlys771z9z260mdcininn8sizirmqq"; depends=[dplyr ggplot2 Matrix RColorBrewer readbitmap rhdf5 rjson rlang S4Vectors Seurat SpatialExperiment SummarizedExperiment tibble viridis]; }; - StarBioTrek = derive2 { name="StarBioTrek"; version="1.26.0"; sha256="0x1x582favjv8f14milkv8cg8f4m3af0i4mscf7gfgdngy6w9wph"; depends=[AnnotationDbi e1071 ggplot2 graphite igraph MLmetrics reshape2 ROCR SpidermiR]; }; - Statial = derive2 { name="Statial"; version="1.2.4"; sha256="1rpq0yq5lb5ca0v8xgspnkyha8xlpx1sikmj4d3fj0r57fb6zr93"; depends=[BiocParallel concaveman data_table dplyr ggplot2 limma magrittr plotly purrr ranger S4Vectors SingleCellExperiment SpatialExperiment spatstat_explore spatstat_geom stringr SummarizedExperiment tibble tidyr tidyselect]; }; - Streamer = derive2 { name="Streamer"; version="1.46.0"; sha256="13ww5akkmakmr9r693pv5j36mvqwrbk0vha98sm8laf4qr5my3iq"; depends=[BiocGenerics graph RBGL]; }; - Structstrings = derive2 { name="Structstrings"; version="1.16.0"; sha256="0aylyb3063cas3nbr8n5w4sq897mw9i5wfk404f4n6w5zsi0xrj9"; depends=[BiocGenerics Biostrings crayon IRanges S4Vectors stringi stringr XVector]; }; - StructuralVariantAnnotation = derive2 { name="StructuralVariantAnnotation"; version="1.16.0"; sha256="0gkps2pls9bpqr8sxm8zwdkn156g8r6mhf4bx17nif5s35qld1rb"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges rlang rtracklayer S4Vectors stringr SummarizedExperiment VariantAnnotation]; }; - SubCellBarCode = derive2 { name="SubCellBarCode"; version="1.16.0"; sha256="0gqqanfbv6yviicw01qdg3zbhmf6s0mhvgakq4nr50a3zzd3mn58"; depends=[AnnotationDbi caret e1071 ggplot2 ggrepel gridExtra networkD3 org_Hs_eg_db Rtsne scatterplot3d]; }; - SummarizedBenchmark = derive2 { name="SummarizedBenchmark"; version="2.18.0"; sha256="1dln3dyr917knd723facyb72lmwb37a7r1vwxm9brywb4whksr7i"; depends=[BiocGenerics BiocParallel crayon digest dplyr ggplot2 mclust rlang S4Vectors sessioninfo stringr SummarizedExperiment tibble tidyr UpSetR]; }; - SummarizedExperiment = derive2 { name="SummarizedExperiment"; version="1.30.2"; sha256="05dy57fi43rpq9bhbsc4apa62xki99r84098pbvi3rjmac811425"; depends=[Biobase BiocGenerics DelayedArray GenomeInfoDb GenomicRanges IRanges Matrix MatrixGenerics S4Arrays S4Vectors]; }; - Summix = derive2 { name="Summix"; version="2.6.0"; sha256="1bqgf45x8dwwgcv4yjh7wb86n5vg93wjw4pk0ac9fj98bmwfs877"; depends=[nloptr]; }; - SwathXtend = derive2 { name="SwathXtend"; version="2.22.0"; sha256="1shrs056xm8m0whrflrd13305mi4nfc3d2bkbrfvv1hpvaqhrp65"; depends=[e1071 lattice openxlsx VennDiagram]; }; - SynExtend = derive2 { name="SynExtend"; version="1.12.0"; sha256="1lfxhvcl1z93zggcl4gv0v748j3wba30169myq1jkjv9ixxqbhnn"; depends=[Biostrings DECIPHER IRanges S4Vectors]; }; - SynMut = derive2 { name="SynMut"; version="1.16.0"; sha256="15xa4xgaw006iaq4dk548q2wx5g9lswc59yq3n1xivxp5y7iqx2z"; depends=[BiocGenerics Biostrings seqinr stringr]; }; - TADCompare = derive2 { name="TADCompare"; version="1.10.0"; sha256="1sykkvq20490q66lzafbl76167srcjl1zmphd4b0wszwhg2xnxx9"; depends=[cluster cowplot dplyr ggplot2 ggpubr HiCcompare magrittr Matrix PRIMME RColorBrewer reshape2 tidyr]; }; - TAPseq = derive2 { name="TAPseq"; version="1.12.0"; sha256="1fgqz21fvfxaqhrvlqynsv0inkxzvjp8kac7pr0gb84p3xwg75y4"; depends=[BiocGenerics BiocParallel Biostrings BSgenome dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges S4Vectors tidyr]; }; - TBSignatureProfiler = derive2 { name="TBSignatureProfiler"; version="1.12.0"; sha256="1skakx7dy0jd180yww49swvg95irxxsfh9p58pq521hx7nwlcki2"; depends=[ASSIGN BiocParallel ComplexHeatmap DESeq2 DT edgeR gdata ggplot2 GSVA magrittr RColorBrewer reshape2 rlang ROCit S4Vectors singscore SummarizedExperiment]; }; - TCGAbiolinks = derive2 { name="TCGAbiolinks"; version="2.28.4"; sha256="1q7d3c37nwyr0hl21v2bzkvnzksq16vkbisnm1p9ldg90qkvdbzk"; depends=[biomaRt data_table downloader dplyr GenomicRanges ggplot2 httr IRanges jsonlite knitr plyr purrr R_utils readr rvest S4Vectors stringr SummarizedExperiment TCGAbiolinksGUI_data tibble tidyr XML xml2]; }; - TCGAutils = derive2 { name="TCGAutils"; version="1.20.4"; sha256="02mkijvh2h58wg7hsi76ycw6gapl0ai190agckaw4l54sqpsx91q"; depends=[AnnotationDbi BiocBaseUtils BiocGenerics GenomeInfoDb GenomicDataCommons GenomicFeatures GenomicRanges IRanges MultiAssayExperiment RaggedExperiment rvest S4Vectors stringr SummarizedExperiment xml2]; }; - TCseq = derive2 { name="TCseq"; version="1.24.3"; sha256="1l8ghap0yq07p8qj7z3d0a4rb2q913xi2my5bsjbl67hm6wpjm87"; depends=[BiocGenerics cluster e1071 edgeR GenomicAlignments GenomicRanges ggplot2 IRanges locfit reshape2 Rsamtools SummarizedExperiment]; }; - TDbasedUFE = derive2 { name="TDbasedUFE"; version="1.0.0"; sha256="1hsjqcrp9fcn28aqvvrd51x75cyh1awzcqdqaxdxg0x2gn548jmf"; depends=[GenomicRanges MOFAdata readr rTensor shiny tximport tximportData]; }; - TDbasedUFEadv = derive2 { name="TDbasedUFEadv"; version="1.0.0"; sha256="1i38wr1imzddsxby43jg5ag3dbprpzkcqa6s7b49a6xn88qrsxrq"; depends=[Biobase DOSE enrichplot enrichR GenomicRanges hash RTCGA rTensor shiny STRINGdb TDbasedUFE]; }; - TEKRABber = derive2 { name="TEKRABber"; version="1.4.0"; sha256="01jk7iax89p5m3pqpjmbbiza1ij768wzm5b9vss9j7vyc2hrym3c"; depends=[apeglm biomaRt DESeq2 dplyr magrittr Rcpp SCBN SummarizedExperiment]; }; - TENxIO = derive2 { name="TENxIO"; version="1.2.0"; sha256="0rlwj54yzrap46xmr2y0g7nf2aq1nbvjdy3s5fqksl06kxglsgcf"; depends=[BiocBaseUtils BiocGenerics BiocIO GenomeInfoDb GenomicRanges Matrix MatrixGenerics R_utils RCurl readr S4Vectors SingleCellExperiment SummarizedExperiment]; }; - TEQC = derive2 { name="TEQC"; version="4.22.0"; sha256="1bkg66nc7lpbd1p5yshy2j3rz75p3njwddjqxdxb5jdp989qpzv8"; depends=[Biobase BiocGenerics hwriter IRanges Rsamtools]; }; - TFARM = derive2 { name="TFARM"; version="1.22.0"; sha256="1dvd240316mwsl1gm4idgk9kyj5na7galq06d0ibvjndbndyhjzl"; depends=[arules fields GenomicRanges gplots stringr]; }; - TFBSTools = derive2 { name="TFBSTools"; version="1.38.0"; sha256="136s96cmd1aq878xy9mqd4k46awywqpmm55lpvash8mv4gg02vg8"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome caTools CNEr DBI DirichletMultinomial GenomeInfoDb GenomicRanges gtools IRanges RSQLite rtracklayer S4Vectors seqLogo TFMPvalue XML XVector]; }; - TFEA_ChIP = derive2 { name="TFEA.ChIP"; version="1.20.0"; sha256="01jz4ckgd4gqmx2ig7spzfyh9iqb4s3js51b99yys9jdr4dxp4cr"; depends=[biomaRt dplyr GenomicFeatures GenomicRanges IRanges org_Hs_eg_db R_utils]; }; - TFHAZ = derive2 { name="TFHAZ"; version="1.22.0"; sha256="1bm87xw9lhn7nk0sihx1nh24bpkh7p1ragaj43jmf5wgi36pisbb"; depends=[GenomicRanges IRanges ORFik S4Vectors]; }; - TFutils = derive2 { name="TFutils"; version="1.20.0"; sha256="0jgl6s1yb94lhrbja8m3rxs4d5g1zzfm74wbkqrklppxdk91akj0"; depends=[AnnotationDbi BiocFileCache dplyr DT GSEABase httr magrittr miniUI org_Hs_eg_db readxl rjson Rsamtools shiny]; }; - TIN = derive2 { name="TIN"; version="1.32.0"; sha256="09v6pw47r54qkmrsiidq1jlb470srw0vnxf083p84rcs54rs2xbc"; depends=[aroma_affymetrix data_table impute squash stringr WGCNA]; }; - TMixClust = derive2 { name="TMixClust"; version="1.22.0"; sha256="19qqgn541gsfvzqny359cfl7814gn8a5dfaln9mv5v01j9kc4z6h"; depends=[Biobase BiocParallel cluster flexclust gss mvtnorm SPEM zoo]; }; - TNBC_CMS = derive2 { name="TNBC.CMS"; version="1.16.0"; sha256="0paf92pcbqr3p99pi0p5icrvjbdp0lcvhk3nz924ky0lh1y3c66l"; depends=[e1071 forestplot GGally ggplot2 ggpubr GSVA pheatmap pracma quadprog R_utils RColorBrewer SummarizedExperiment survival]; }; - TOAST = derive2 { name="TOAST"; version="1.14.0"; sha256="0ngm218n5cv5n4ixc0fd1i6fzxyg14kzvh0zjd4wav4wb1ya2kkp"; depends=[corpcor doParallel EpiDISH GGally ggplot2 limma nnls quadprog SummarizedExperiment tidyr]; }; - TOP = derive2 { name="TOP"; version="1.0.0"; sha256="1fz3f1a8fnzx7xm9qmfqbmcj65y4gyrilmx2gp4z8akfpv5mws4m"; depends=[assertthat caret ClassifyR directPA doParallel dplyr ggnewscale ggplot2 ggraph ggrepel ggthemes glmnet Hmisc igraph latex2exp limma magrittr plotly pROC purrr reshape2 statmod stringr survival tibble tidygraph tidyr]; }; - TPP = derive2 { name="TPP"; version="3.28.0"; sha256="1sbs0hd7drw43wizw8nrxnap1qyg67vc5bf0h1qiqjl6wa0pb3ni"; depends=[Biobase biobroom broom data_table doParallel dplyr foreach futile_logger ggplot2 gridExtra knitr limma magrittr MASS mefa nls2 openxlsx plyr purrr RColorBrewer RCurl reshape2 rmarkdown stringr tibble tidyr VennDiagram VGAM]; }; - TPP2D = derive2 { name="TPP2D"; version="1.16.0"; sha256="1hly39vzpdg4xrzbpvy5xkq7ciihb916zdj9ciq2jxll97cxsn1f"; depends=[BiocParallel doParallel dplyr foreach ggplot2 limma MASS openxlsx RCurl stringr tidyr]; }; - TREG = derive2 { name="TREG"; version="1.4.0"; sha256="1j1i49ddnxjwvxdrn2mz2ym0alsv73bzwnxjdwh1ygc11gz4c53z"; depends=[Matrix purrr rafalib SummarizedExperiment]; }; - TRESS = derive2 { name="TRESS"; version="1.6.0"; sha256="0jfzdjrfkq0i13ccx8a7cjbpqjzkmsrdfi7qwiwskcdxgmnygiv3"; depends=[AnnotationDbi GenomicFeatures GenomicRanges IRanges Matrix matrixStats Rsamtools rtracklayer S4Vectors]; }; - TRONCO = derive2 { name="TRONCO"; version="2.32.0"; sha256="11xd7dlh3ka3zqap18gj5ba5m0lfhwfhl3x7yqw6w670xvh1baxs"; depends=[bnlearn circlize doParallel foreach gridExtra gtable gtools igraph iterators R_matlab RColorBrewer Rgraphviz scales xtable]; }; - TSCAN = derive2 { name="TSCAN"; version="1.38.0"; sha256="09ix74al9hxyhnsvl14c8mhiinz1i94mykxq9wk5f4q6pkm4ks8g"; depends=[combinat DelayedArray fastICA ggplot2 gplots igraph Matrix mclust mgcv plyr S4Vectors shiny SingleCellExperiment SummarizedExperiment TrajectoryUtils]; }; - TTMap = derive2 { name="TTMap"; version="1.22.0"; sha256="1wkyyrrqwc5i5x5pjav5y3vha3q2a86w1xykkfzj18bf9j3bp4pi"; depends=[Biobase colorRamps rgl SummarizedExperiment]; }; - TVTB = derive2 { name="TVTB"; version="1.26.0"; sha256="12c6cnjjapqsvsqca4461f9n4r6mnxn9ydpjqs0w0dslv368xwhy"; depends=[AnnotationFilter BiocGenerics BiocParallel Biostrings ensembldb ensemblVEP GenomeInfoDb GenomicRanges GGally ggplot2 Gviz IRanges limma reshape2 Rsamtools S4Vectors SummarizedExperiment VariantAnnotation]; }; - TargetDecoy = derive2 { name="TargetDecoy"; version="1.6.0"; sha256="0ahbp1aamf5jg2gf8w0kas47zzv1h7a8l2wvq80jhx4fdwvwgcvb"; depends=[ggplot2 ggpubr miniUI mzID mzR shiny]; }; - TargetScore = derive2 { name="TargetScore"; version="1.38.0"; sha256="11rx2ykiy2npvdl1vi2gaw8h8v905han1klcv1nxcfwnvsd3m31v"; depends=[Matrix pracma]; }; - TargetSearch = derive2 { name="TargetSearch"; version="2.2.0"; sha256="1ppga7v7np945ph3ns8x92mrd5788h1ls0fgbhfcni0h7h16nfdb"; depends=[assertthat ncdf4]; }; - TileDBArray = derive2 { name="TileDBArray"; version="1.10.0"; sha256="15hg0wdm1a9l2j9h4i3mgdnzbj5z7b65jfnmb3hmahxmh9rsm7pp"; depends=[DelayedArray Rcpp S4Vectors tiledb]; }; - TimiRGeN = derive2 { name="TimiRGeN"; version="1.10.0"; sha256="0p97844dh4g2qrk2rs3vh9j4g4k3hqfl5k74wnpfdkwxs5ignjqb"; depends=[biomaRt clusterProfiler dplyr FreqProf ggdendro gghighlight ggplot2 gplots gtools igraph Mfuzz MultiAssayExperiment RCy3 readxl reshape2 rWikiPathways scales stringr tidyr]; }; - TissueEnrich = derive2 { name="TissueEnrich"; version="1.20.0"; sha256="0ndwq9k73ayj01waacj267wmz045fawjx2grvhhwmzayy11n8lvp"; depends=[dplyr ensurer ggplot2 GSEABase SummarizedExperiment tidyr]; }; - TitanCNA = derive2 { name="TitanCNA"; version="1.38.0"; sha256="1hhbhykv10jmc8q9ba594azl80vd4hk9sy28sr1mayajchzhm3gi"; depends=[BiocGenerics data_table dplyr foreach GenomeInfoDb GenomicRanges IRanges VariantAnnotation]; }; - TnT = derive2 { name="TnT"; version="1.22.0"; sha256="1qqap0ij2gc5akmk7ihk6460wvk0088yxw5ianpph6ag3183dxsb"; depends=[Biobase data_table GenomeInfoDb GenomicRanges htmlwidgets IRanges jsonlite knitr S4Vectors]; }; - ToxicoGx = derive2 { name="ToxicoGx"; version="2.4.0"; sha256="1jsg551axpyms349vhgj4gg4qah3qs5ps5v006br165v74qn55i8"; depends=[assertthat Biobase BiocGenerics BiocParallel caTools CoreGx data_table downloader dplyr ggplot2 jsonlite limma magrittr reshape2 S4Vectors scales SummarizedExperiment tibble tidyr]; }; - TrajectoryGeometry = derive2 { name="TrajectoryGeometry"; version="1.8.0"; sha256="1lbs0z4gyzr5ah2gm4qd9hsmcl57x6w86s5rd1dr9grdkahzdlw4"; depends=[ggplot2 pracma rgl]; }; - TrajectoryUtils = derive2 { name="TrajectoryUtils"; version="1.8.0"; sha256="1q3c226fskl45gq28xj2w5paz2s9n9kxm0bkkgg0329w399cs09k"; depends=[igraph Matrix S4Vectors SingleCellExperiment SummarizedExperiment]; }; - TransView = derive2 { name="TransView"; version="1.44.0"; sha256="06g3lmd1rh171rnk09b1af7nrlinwncd45srzzxbf3qccg2shch7"; depends=[BiocGenerics GenomicRanges gplots IRanges Rhtslib S4Vectors zlibbioc]; }; - TreeAndLeaf = derive2 { name="TreeAndLeaf"; version="1.12.0"; sha256="0i8yncfc5kp296dgwr43vk0hwz7hziz43sf9ikpqxmdsi6kxd42q"; depends=[ape igraph RedeR]; }; - TreeSummarizedExperiment = derive2 { name="TreeSummarizedExperiment"; version="2.8.0"; sha256="1grnz82a7l5dpwssc24yxhllqdcvza2gc4h4cc6zxjcdg5r4l1ra"; depends=[ape BiocGenerics BiocParallel Biostrings dplyr IRanges rlang S4Vectors SingleCellExperiment SummarizedExperiment treeio]; }; - Trendy = derive2 { name="Trendy"; version="1.22.0"; sha256="1fhiyk2kz8z2pgi02fi37xxn5sv2nfspm756srlwvffbghjhafis"; depends=[BiocParallel DT gplots magrittr S4Vectors segmented shiny shinyFiles SummarizedExperiment]; }; - TurboNorm = derive2 { name="TurboNorm"; version="1.48.0"; sha256="08556zs1kdjrj37ypkfrffi1saqgy3p2bjl77xc12az3bxlk04qj"; depends=[affy convert lattice limma marray]; }; - TypeInfo = derive2 { name="TypeInfo"; version="1.66.0"; sha256="1k0f6br47a21fkk1pys2fk41bp0xvgqv94fb7qkqi7n10ibydh7v"; depends=[]; }; - UCell = derive2 { name="UCell"; version="2.4.0"; sha256="01qcwmiqri4xvwr3j4k1g062rfj6bbc0bvh0ifq1jq2xrm1azw9y"; depends=[BiocNeighbors BiocParallel data_table Matrix SingleCellExperiment SummarizedExperiment]; }; - UMI4Cats = derive2 { name="UMI4Cats"; version="1.10.0"; sha256="13xfg6y40fg4yrw74kcj427ynypkpy3a625xqx5gmgqsdi3ii66x"; depends=[annotate BiocFileCache BiocGenerics Biostrings BSgenome cowplot DESeq2 dplyr fda GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges magick magrittr org_Hs_eg_db R_utils rappdirs Rbowtie2 RColorBrewer regioneR reshape2 rlang Rsamtools S4Vectors scales ShortRead stringr SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene zoo]; }; - UNDO = derive2 { name="UNDO"; version="1.42.0"; sha256="0y4fgiyz6dzf7vaa0klsy2brrg86l3ycpd735rg0gxjs1lj80ln1"; depends=[Biobase BiocGenerics boot MASS nnls]; }; - Ularcirc = derive2 { name="Ularcirc"; version="1.18.0"; sha256="1vp5d78hcc7wnsvd20cxkj3ad8gbgzjsj6g8zrahzvaqqp2jdbwz"; depends=[AnnotationDbi AnnotationHub BiocGenerics Biostrings BSgenome data_table DT GenomeInfoDb GenomeInfoDbData GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel gsubfn mirbase_db moments Organism_dplyr plotgardener R_utils S4Vectors shiny shinydashboard shinyFiles shinyjs yaml]; }; - UniProt_ws = derive2 { name="UniProt.ws"; version="2.40.1"; sha256="04nmwfw2r0ibbbzsv0qq86zqnp0igcxn70hi9c5hg6nqy704h670"; depends=[AnnotationDbi BiocBaseUtils BiocFileCache BiocGenerics httpcache httr jsonlite progress rjsoncons RSQLite]; }; - Uniquorn = derive2 { name="Uniquorn"; version="2.20.0"; sha256="1k2r966i4wqvglb120j52rgb6g9q21n5zi37ma2dd346ywvw03yn"; depends=[data_table doParallel foreach GenomicRanges IRanges R_utils stringr VariantAnnotation WriteXLS]; }; - VAExprs = derive2 { name="VAExprs"; version="1.6.0"; sha256="125fybn16imba96m5k6k1rnqb8il1y4xihh7ix7im66pv83wrgw2"; depends=[CatEncoders DeepPINCS DiagrammeR keras mclust purrr scater SingleCellExperiment SummarizedExperiment tensorflow]; }; - VCFArray = derive2 { name="VCFArray"; version="1.16.0"; sha256="17y7pz9k8czxndb04zvz37gbk4lfjskbbwap6495fdkwn9v9i6hf"; depends=[BiocGenerics DelayedArray GenomicFiles GenomicRanges Rsamtools S4Vectors VariantAnnotation]; }; - VDJdive = derive2 { name="VDJdive"; version="1.2.0"; sha256="1m8dc6l4limam33dnzy35m9wbzj99igp8zv9fh67ad4wf2s0ss3k"; depends=[basilisk BiocParallel cowplot ggplot2 gridExtra IRanges Matrix RColorBrewer reticulate S4Vectors SingleCellExperiment SummarizedExperiment]; }; - VERSO = derive2 { name="VERSO"; version="1.10.0"; sha256="1i058zax2hwkx8m32dbp7g4s5y7vf67rmbd1q2awy2nf5wds2zgn"; depends=[ape data_tree Rfast]; }; - VaSP = derive2 { name="VaSP"; version="1.12.0"; sha256="0ng86j5j9ddv53rlh478fqqdikna0jn7v2faq02mcd79n397mmh8"; depends=[ballgown cluster GenomeInfoDb GenomicAlignments GenomicRanges IRanges matrixStats Rsamtools S4Vectors]; }; - VanillaICE = derive2 { name="VanillaICE"; version="1.62.0"; sha256="06fmipljljsh98p39rf7ycyji91jjrsz1nzsnd3wjjc3i6apkhdv"; depends=[Biobase BiocGenerics BSgenome_Hsapiens_UCSC_hg18 crlmm data_table foreach GenomeInfoDb GenomicRanges IRanges lattice MatrixGenerics matrixStats oligoClasses S4Vectors SummarizedExperiment]; }; - VarCon = derive2 { name="VarCon"; version="1.8.0"; sha256="0p4sfdhbxqdwwggp0gf8c3kmldvfah7i9855dbxa4n70gw7125sc"; depends=[Biostrings BSgenome GenomicRanges ggplot2 IRanges shiny shinycssloaders shinyFiles]; }; - VariantAnnotation = derive2 { name="VariantAnnotation"; version="1.46.0"; sha256="0masx496cd4ypz6r0l8kk8vi81sipqdnx4iyifjvkrds1p87mvsm"; depends=[AnnotationDbi Biobase BiocGenerics Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges MatrixGenerics Rhtslib Rsamtools rtracklayer S4Vectors SummarizedExperiment XVector zlibbioc]; }; - VariantExperiment = derive2 { name="VariantExperiment"; version="1.14.0"; sha256="1dld5r9vqxj8gr93d09lqzyr34d50h2rzvmkl4z7xgxnd9i56i48"; depends=[Biostrings DelayedArray DelayedDataFrame GDSArray gdsfmt GenomicRanges IRanges S4Vectors SeqArray SNPRelate SummarizedExperiment]; }; - VariantFiltering = derive2 { name="VariantFiltering"; version="1.36.1"; sha256="0v0shsv0s9fzakdb4p84jfc4z57ryan27r1dkbvb3v25kjrhd8fi"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores graph Gviz IRanges RBGL Rsamtools S4Vectors shiny shinyjs shinythemes shinyTree SummarizedExperiment VariantAnnotation XVector]; }; - VariantTools = derive2 { name="VariantTools"; version="1.42.0"; sha256="1vkdw626r1ffdsvry6qwhd1i3lkyb9wzrp9zf3dfafi02cap6r47"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicRanges IRanges Matrix Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; - VegaMC = derive2 { name="VegaMC"; version="3.38.0"; sha256="0vz8jj1vaghbs6i2m4ik2lkhjn3vz8qla8i8kgmbc4wj5ny32q9k"; depends=[Biobase biomaRt]; }; - VennDetail = derive2 { name="VennDetail"; version="1.16.0"; sha256="126a0zpn6vw5l65zlcd8m53gfs4fdgj1nzw1fv0bqk8jiv44q87b"; depends=[dplyr futile_logger ggplot2 magrittr purrr tibble UpSetR VennDiagram]; }; - ViSEAGO = derive2 { name="ViSEAGO"; version="1.14.0"; sha256="1d8473i0hk4d6kncvrv7xrsbayjkwnpln22d7xrll9kmhvkr679b"; depends=[AnnotationDbi AnnotationForge biomaRt data_table dendextend DiagrammeR DT dynamicTreeCut fgsea ggplot2 GO_db GOSemSim heatmaply htmlwidgets igraph plotly processx R_utils RColorBrewer scales topGO UpSetR]; }; - Voyager = derive2 { name="Voyager"; version="1.2.7"; sha256="0rvszinn1jvb85qw4mfcz5pw20354azz6bmmcfidrh60likc3p5q"; depends=[BiocParallel bluster ggnewscale ggplot2 lifecycle Matrix matrixStats patchwork rlang RSpectra S4Vectors scales scico sf SingleCellExperiment SpatialExperiment SpatialFeatureExperiment spdep SummarizedExperiment terra]; }; - VplotR = derive2 { name="VplotR"; version="1.10.0"; sha256="02b82ajbq2448b9h6jx24jsrxavgm6bfn6kk1v2xf2fcipdx8chs"; depends=[cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges magrittr RColorBrewer reshape2 Rsamtools S4Vectors zoo]; }; - Wrench = derive2 { name="Wrench"; version="1.18.0"; sha256="18x12395928d0mf8kffmdjqkdxrzgqzzhhvs7sdzldwyas6hfg2h"; depends=[limma locfit matrixStats]; }; - XDE = derive2 { name="XDE"; version="2.46.0"; sha256="096pbkj4sw9kx2k25yw78zb2y615w86cvrgjk1xkvyi0w6v8mk6m"; depends=[Biobase BiocGenerics genefilter GeneMeta gtools mvtnorm RColorBrewer siggenes]; }; - XINA = derive2 { name="XINA"; version="1.18.0"; sha256="1byk8xgn9rwfbi677b99ysxi4a9n58fr3hbnwjzhnziy2n2cd703"; depends=[alluvial ggplot2 gridExtra igraph mclust plyr STRINGdb]; }; - XNAString = derive2 { name="XNAString"; version="1.8.0"; sha256="0xq39n1y807vv14fx57w6iz3kln384c6igmdphi1cli7b228xyh5"; depends=[Biostrings BSgenome data_table formattable future_apply GenomicRanges IRanges Rcpp S4Vectors stringi stringr]; }; - XVector = derive2 { name="XVector"; version="0.40.0"; sha256="1v10hfz658gnb6p7pzdl28jbyypv91wx70i0dvi384nfgznhvmj2"; depends=[BiocGenerics IRanges S4Vectors zlibbioc]; }; - Xeva = derive2 { name="Xeva"; version="1.16.0"; sha256="0q1y9qlfr7qbgdmxfrwizx94qp5ddsmkq295lh87qhjx8vv90fcs"; depends=[BBmisc Biobase ComplexHeatmap doParallel downloader ggplot2 nlme PharmacoGx Rmisc scales]; }; - YAPSA = derive2 { name="YAPSA"; version="1.26.8"; sha256="16rr2bkni3jx5qskr5fz5lvf23d03xgd3m4068mnd3n9r23hpb4p"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 circlize ComplexHeatmap corrplot dendextend doParallel dplyr GenomeInfoDb GenomicRanges GetoptLong ggbeeswarm ggplot2 gridExtra gtrellis KEGGREST limSolve magrittr PMCMRplus pracma reshape2 SomaticSignatures VariantAnnotation]; }; - ZygosityPredictor = derive2 { name="ZygosityPredictor"; version="1.0.3"; sha256="0sbb2s851fx52rds4mj8qppd1pv5i333z00snypb8illvlid7mk3"; depends=[DelayedArray dplyr GenomicAlignments GenomicRanges igraph IRanges purrr Rsamtools stringr tibble VariantAnnotation]; }; - a4 = derive2 { name="a4"; version="1.48.0"; sha256="0n49scwwmg51gcakbc0bfjcy1lcpdxg974l11yk35kj0bg9ynpgi"; depends=[a4Base a4Classif a4Core a4Preproc a4Reporting]; }; - a4Base = derive2 { name="a4Base"; version="1.48.0"; sha256="01c8rps321820b0pchfqv8shglb26rys7hqkwygpzzx3jj310v8x"; depends=[a4Core a4Preproc annaffy Biobase genefilter glmnet gplots limma mpm multtest]; }; - a4Classif = derive2 { name="a4Classif"; version="1.48.0"; sha256="1z5xypz5jvb06pk71x6953iirhh1w1mggm0pxqibg0ag9lx2zzmv"; depends=[a4Core a4Preproc Biobase glmnet pamr ROCR varSelRF]; }; - a4Core = derive2 { name="a4Core"; version="1.48.0"; sha256="14q9q3dxnmmm491af53hd0dwwqiz47xxrwy05axh85x4fh01j3xx"; depends=[Biobase glmnet]; }; - a4Preproc = derive2 { name="a4Preproc"; version="1.48.0"; sha256="1dxh0zbv4z4gqnwbv7yn247gx7cqv68vb43p6f98c2kyqilfpjg9"; depends=[Biobase BiocGenerics]; }; - a4Reporting = derive2 { name="a4Reporting"; version="1.48.0"; sha256="0lx7fx2vlpq3c347gx842qlcvnzl0r25i5a55l0qbf8rb5liq2yv"; depends=[xtable]; }; - aCGH = derive2 { name="aCGH"; version="1.78.0"; sha256="0k8fbwhh1w0b0zy5qgixmcnwxi3v78f1bjmjg1yx6paniwk58bzn"; depends=[Biobase cluster multtest survival]; }; - abseqR = derive2 { name="abseqR"; version="1.18.0"; sha256="05kcwmv3d59lrdnpi82701biwawnnpfvpwr170xdi3hfdff6g59c"; depends=[BiocParallel BiocStyle circlize flexdashboard ggcorrplot ggdendro ggplot2 gridExtra knitr plotly plyr png RColorBrewer reshape2 rmarkdown stringr vegan VennDiagram]; }; - acde = derive2 { name="acde"; version="1.30.0"; sha256="088dq6mc9m1bx0dprcz8cdpfp447lnxq7420r139mhcik0z21vky"; depends=[boot]; }; - adSplit = derive2 { name="adSplit"; version="1.70.0"; sha256="0nbdcrc2wiq3mkpayjslz66ik2vk3h3f18zg6df9xaivanxrkk5z"; depends=[AnnotationDbi Biobase cluster GO_db KEGGREST multtest]; }; - adductomicsR = derive2 { name="adductomicsR"; version="1.16.0"; sha256="17cm65n2awbwmk5i8h1n30abk6pww42ngcy9m24dxz1qdbnvx5fn"; depends=[adductData ade4 AnnotationHub bootstrap data_table doSNOW dplyr DT ExperimentHub fastcluster foreach fpc mzR OrgMassSpecR pastecs pracma RcppEigen reshape2 rvest smoother zoo]; }; - affxparser = derive2 { name="affxparser"; version="1.72.0"; sha256="0n86my3bzy3g7xn60kizs5ym5m016zrkg7dv96kx246mrnv0ax8y"; depends=[]; }; - affy = derive2 { name="affy"; version="1.78.2"; sha256="0zsr87zsw5rp5rgdiv1bbsi6fx6b7qzlgjirzczky6fmf4dqwgnm"; depends=[affyio Biobase BiocGenerics BiocManager preprocessCore zlibbioc]; }; - affyContam = derive2 { name="affyContam"; version="1.58.0"; sha256="07a6kd51rlj433yxmyd2j8nl8qn1hw8wv3mk270dp8xxlk613y3p"; depends=[affy affydata Biobase]; }; - affyILM = derive2 { name="affyILM"; version="1.52.0"; sha256="02g0bg21ms0gmq6dvdcj91b0p47ppqcfvgj73y0mbdx6prrmcagx"; depends=[affxparser affy Biobase gcrma]; }; - affyPLM = derive2 { name="affyPLM"; version="1.76.1"; sha256="1660nn4541f2k5qpzxkkkf9h92ndzqr0j1jpzh4czs466766kn8y"; depends=[affy Biobase BiocGenerics gcrma preprocessCore zlibbioc]; }; - affycomp = derive2 { name="affycomp"; version="1.76.1"; sha256="0wccj8q8sl0zc68nr5qf1qih8awqf1h6bwi5hq9d7r59p4g4r9n1"; depends=[Biobase]; }; - affycoretools = derive2 { name="affycoretools"; version="1.72.0"; sha256="1h065fhw0n2ga74csyhqbj4qfhkg058pqa684ixcski4rhsd7hcf"; depends=[affy AnnotationDbi Biobase BiocGenerics DBI edgeR gcrma ggplot2 Glimma GOstats gplots hwriter lattice limma oligoClasses ReportingTools RSQLite S4Vectors xtable]; }; - affyio = derive2 { name="affyio"; version="1.70.0"; sha256="1r1c0iwix0n8r433x4bv8hvzhkablc4xkdgg2b1fk4ijhd1iwf3c"; depends=[zlibbioc]; }; - affylmGUI = derive2 { name="affylmGUI"; version="1.74.0"; sha256="1m1gvz313h4x080889b05fjq60wn57dxlgq03qkwy65scl3x2fcn"; depends=[affy affyio affyPLM AnnotationDbi BiocGenerics BiocManager gcrma limma R2HTML tkrplot xtable]; }; - aggregateBioVar = derive2 { name="aggregateBioVar"; version="1.10.0"; sha256="0g7n6dj1scad833y2182946hn3yh4jad20wvw9ic8gmqb438vihj"; depends=[Matrix rlang S4Vectors SingleCellExperiment SummarizedExperiment tibble]; }; - agilp = derive2 { name="agilp"; version="3.32.0"; sha256="0rm646iqc8hf8vfk0pdg064hm9k4k371bp1q4k7z2l16zhs8a07r"; depends=[]; }; - airpart = derive2 { name="airpart"; version="1.8.0"; sha256="024vcxf23irlysc8srqii3zqhhldpwdcj0i4zzhz18x3bdy9cbj0"; depends=[apeglm clue ComplexHeatmap dplyr dynamicTreeCut emdbook forestplot ggplot2 lpSolve matrixStats mclust pbapply plyr RColorBrewer rlang S4Vectors scater SingleCellExperiment smurf SummarizedExperiment]; }; - alabaster = derive2 { name="alabaster"; version="1.0.0"; sha256="0jmi44z8ds9i11d7pkkm93a7rnrxm2abmwmx606vv3kd7wxciah6"; depends=[alabaster_base alabaster_bumpy alabaster_mae alabaster_matrix alabaster_ranges alabaster_sce alabaster_se alabaster_spatial alabaster_string alabaster_vcf]; }; - alabaster_base = derive2 { name="alabaster.base"; version="1.0.0"; sha256="1i5hn3fspp6gg0n14zhv7x5i6n8c9n93z0nc8b7dfjd12zf27wbl"; depends=[alabaster_schemas jsonlite jsonvalidate Rcpp rhdf5 Rhdf5lib S4Vectors]; }; - alabaster_bumpy = derive2 { name="alabaster.bumpy"; version="1.0.0"; sha256="1byzdbhnpcmbxg0074ri7n9yqhmx0cgawhr0y53d5qxv8nhgap9m"; depends=[alabaster_base BiocGenerics BumpyMatrix IRanges Matrix S4Vectors]; }; - alabaster_mae = derive2 { name="alabaster.mae"; version="1.0.0"; sha256="0yj2kzb4x0a20i855l3vljr0cq4slg2jf6q99ahg4c99vyc3nx93"; depends=[alabaster_base alabaster_se MultiAssayExperiment S4Vectors]; }; - alabaster_matrix = derive2 { name="alabaster.matrix"; version="1.0.0"; sha256="0l0m9qs58q2kfy2076w4dzlqlg7lbrf40r7dq5n2hkqzp6yj8x33"; depends=[alabaster_base DelayedArray HDF5Array Matrix rhdf5]; }; - alabaster_ranges = derive2 { name="alabaster.ranges"; version="1.0.0"; sha256="0bb9qqmd7vxlzmpp345izr4w27qq0gjxq8xqmyrdc6ap45j9x1xg"; depends=[alabaster_base BiocGenerics GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - alabaster_sce = derive2 { name="alabaster.sce"; version="1.0.0"; sha256="12xzii527qmr2cj4zsx65dfn36h5jhg951sw90gwngycns9ci5yn"; depends=[alabaster_base alabaster_se SingleCellExperiment]; }; - alabaster_schemas = derive2 { name="alabaster.schemas"; version="1.0.2"; sha256="1rpkvhj3ch6bjbj4r3c5gf3nr1wfjq4vfkzvpjal9x3acwnwbm5d"; depends=[]; }; - alabaster_se = derive2 { name="alabaster.se"; version="1.0.0"; sha256="0x87zdls1qkhha7zfgwv4qcgxnncg98s61sx3iiva2717bqpbk61"; depends=[alabaster_base alabaster_matrix alabaster_ranges BiocGenerics GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; - alabaster_spatial = derive2 { name="alabaster.spatial"; version="1.0.0"; sha256="1afz84q52y5v0ha68ax6d9h36mmmp5mhgca1c4s9yig5f4ffd24m"; depends=[alabaster_base alabaster_sce jsonlite S4Vectors SpatialExperiment SummarizedExperiment]; }; - alabaster_string = derive2 { name="alabaster.string"; version="1.0.1"; sha256="015wi8y1vqmk9gzd1zflp72cnsfrvlp1pnjv0hxry8jw16238g7a"; depends=[alabaster_base Biostrings]; }; - alabaster_vcf = derive2 { name="alabaster.vcf"; version="1.0.0"; sha256="0p956zqg4z94n0p3drvw362mmvd91nkai82m9sg6janzxkvhrfcl"; depends=[alabaster_base alabaster_se alabaster_string Rsamtools S4Vectors VariantAnnotation]; }; - alevinQC = derive2 { name="alevinQC"; version="1.16.1"; sha256="137bvqyh1cqmhf9x3xl6n1dv0380lpcr2nxhd60b7zqiw4p14i5a"; depends=[cowplot dplyr DT GGally ggplot2 Rcpp rjson rlang rmarkdown shiny shinydashboard tximport]; }; - alpine = derive2 { name="alpine"; version="1.26.0"; sha256="1md4m9ln1mpxf7d2h7jnsjyi4zrviiqn9fzk1gkz2n6qj7jwpqbb"; depends=[Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph IRanges RBGL Rsamtools S4Vectors speedglm stringr SummarizedExperiment]; }; - altcdfenvs = derive2 { name="altcdfenvs"; version="2.62.0"; sha256="1jpimj195rdw86pp623ylrmcxkxmn8qmc84vsw9prnf3gdz3q18b"; depends=[affy Biobase BiocGenerics Biostrings hypergraph makecdfenv S4Vectors]; }; - amplican = derive2 { name="amplican"; version="1.22.1"; sha256="1bws4awpjvswzj53zwn9x5ra76ngpqn2h8hlr6y0x7j9wwwqldc7"; depends=[BiocGenerics BiocParallel Biostrings cluster data_table dplyr GenomeInfoDb GenomicRanges ggplot2 ggthemes gridExtra gtable IRanges knitr Matrix matrixStats Rcpp rmarkdown S4Vectors ShortRead stringr waffle]; }; - animalcules = derive2 { name="animalcules"; version="1.16.0"; sha256="1z46lpd2zi3b88i27qm48wy4acb2xsjh63zgxhfx2y4bgvr29ni7"; depends=[ape assertthat biomformat caret covr DESeq2 dplyr DT forcats ggplot2 glmnet GUniFrac lattice limma magrittr Matrix MultiAssayExperiment plotly plotROC rentrez reshape2 S4Vectors scales shiny shinyjs SummarizedExperiment tibble tsne umap vegan XML]; }; - annaffy = derive2 { name="annaffy"; version="1.72.0"; sha256="0jy3qk31lb11bixncb2w2hw1ibvik31bfi2l5vyq5wjyxndfyax6"; depends=[AnnotationDbi Biobase BiocManager DBI GO_db]; }; - annmap = derive2 { name="annmap"; version="1.42.0"; sha256="0gilb8yxba1cqi678w9xkq77m8lf3k8dqcldh68cll61xsgihl1v"; depends=[Biobase BiocGenerics DBI digest genefilter GenomicRanges IRanges lattice RMySQL Rsamtools]; }; - annotate = derive2 { name="annotate"; version="1.78.0"; sha256="1104r6jdy3nza8329xmq428ljfbfi2xwkd92sw519g0yqryh09vy"; depends=[AnnotationDbi Biobase BiocGenerics DBI httr XML xtable]; }; - annotationTools = derive2 { name="annotationTools"; version="1.74.0"; sha256="0dwbh2h2mp8gy0kwqmkri3q2glnzcj8cn83j1qyh7lk15anc33g8"; depends=[Biobase]; }; - annotatr = derive2 { name="annotatr"; version="1.26.0"; sha256="1vjbk1vpqjxy9wv2a6sc32yyk0bhkbvdx9hl3vs5yjifwdswh2pw"; depends=[AnnotationDbi AnnotationHub dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges readr regioneR reshape2 rtracklayer S4Vectors]; }; - anota = derive2 { name="anota"; version="1.48.0"; sha256="0ic12p1qyfrmh3l1wv7s9yi8sr84crj4nksmcx0lybb6rak9gy0x"; depends=[multtest qvalue]; }; - anota2seq = derive2 { name="anota2seq"; version="1.22.0"; sha256="0pmk45276bl3qppzxlp4jpc8bsvdpca8nzrdl6c4n9r3xhzfpyq0"; depends=[DESeq2 edgeR limma multtest qvalue RColorBrewer SummarizedExperiment]; }; - antiProfiles = derive2 { name="antiProfiles"; version="1.40.0"; sha256="0ix0r36fs6vr0gyryi1j15pcc0hvpynsg9505w95dsn3p4fdnhg8"; depends=[locfit matrixStats]; }; - apComplex = derive2 { name="apComplex"; version="2.66.0"; sha256="057p1bsqqw3r49bsx78prqc4jha468bfx50gpl62giix0cfs007f"; depends=[graph org_Sc_sgd_db RBGL Rgraphviz]; }; - apeglm = derive2 { name="apeglm"; version="1.22.1"; sha256="19r1mhpkn3xy6l188c14k9xgn25xqc718bwrlmnz63lak6mp4ws7"; depends=[emdbook GenomicRanges Rcpp RcppEigen RcppNumerical SummarizedExperiment]; }; - appreci8R = derive2 { name="appreci8R"; version="1.18.0"; sha256="1rmwb4kszlk8w985kamwglmn1hnimxvvqbp19mfw5l6f8nns13vi"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 COSMIC_67 DT GenomicFeatures GenomicRanges GenomicScores Homo_sapiens IRanges MafDb_1Kgenomes_phase3_hs37d5 MafDb_ExAC_r1_0_hs37d5 MafDb_gnomADex_r2_1_hs37d5 openxlsx PolyPhen_Hsapiens_dbSNP131 rentrez Rsamtools S4Vectors seqinr shiny shinyjs SIFT_Hsapiens_dbSNP137 SNPlocs_Hsapiens_dbSNP144_GRCh37 stringr SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation XtraSNPlocs_Hsapiens_dbSNP144_GRCh37]; }; - aroma_light = derive2 { name="aroma.light"; version="3.30.0"; sha256="118yqvbj4ad2b2bik0zi3ir15kxh9fbdi9qqyk52isvcdbv6069p"; depends=[matrixStats R_methodsS3 R_oo R_utils]; }; - arrayMvout = derive2 { name="arrayMvout"; version="1.58.0"; sha256="1wdqcfa0h070lky4m2h5k4wg8lg7014y0gk95gip5zags29zjwqb"; depends=[affy affyContam Biobase lumi mdqc parody]; }; - arrayQuality = derive2 { name="arrayQuality"; version="1.78.0"; sha256="0lq59y4pi13z4v1i1ah78xlchxy34x1lplsh0n42wlk88rk0rqxd"; depends=[gridBase hexbin limma marray RColorBrewer]; }; - arrayQualityMetrics = derive2 { name="arrayQualityMetrics"; version="3.56.0"; sha256="06plgmgla7hvryqfcid4y35s24r50s39d9f8sjchwbxqciwy72wj"; depends=[affy affyPLM beadarray Biobase genefilter gridSVG Hmisc hwriter lattice latticeExtra limma RColorBrewer setRNG svglite vsn XML]; }; - artMS = derive2 { name="artMS"; version="1.18.0"; sha256="1j6r3h3c0la2v6gnfwagzy2zl9fy191ipw9r2p805avxzn2pr4br"; depends=[AnnotationDbi bit64 circlize cluster corrplot data_table dplyr getopt ggdendro ggplot2 ggrepel gplots limma MSstats openxlsx org_Hs_eg_db pheatmap plotly plyr RColorBrewer scales seqinr stringr tidyr UpSetR VennDiagram yaml]; }; - atSNP = derive2 { name="atSNP"; version="1.16.0"; sha256="14j8lbry4wpn8izch1nra5npg4qsh49ql4bf21jvvr3gl3qa1g7l"; depends=[BiocFileCache BiocParallel BSgenome data_table ggplot2 lifecycle motifStack rappdirs Rcpp testthat]; }; - atena = derive2 { name="atena"; version="1.6.0"; sha256="1057mkxrjfnqhb1mydhd7vlb1s8h7n4zc4cl063gw4sgj6mw99ij"; depends=[AnnotationHub BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges Matrix matrixStats Rsamtools S4Vectors sparseMatrixStats SQUAREM SummarizedExperiment]; }; - attract = derive2 { name="attract"; version="1.52.0"; sha256="1lb6npxm5f82z8278v6fh7k5w8d4z73881iplm3ashc27wiw6sz3"; depends=[AnnotationDbi Biobase cluster GOstats KEGGREST limma org_Hs_eg_db reactome_db]; }; - autonomics = derive2 { name="autonomics"; version="1.8.0"; sha256="1gmckbzkb2gpfw0inkqbsfdfj94yfarhla58zqisk3p28554mrcv"; depends=[abind assertive BiocFileCache BiocGenerics bit64 colorspace data_table dplyr edgeR ggplot2 ggrepel gridExtra limma magrittr matrixStats MultiAssayExperiment pcaMethods R_utils rappdirs readxl rlang S4Vectors scales stringi SummarizedExperiment tidyr]; }; - awst = derive2 { name="awst"; version="1.8.0"; sha256="0nwpfxfrx9rw4vl02vr311ivmmk96ajlwyhwms642hjv74j2yiji"; depends=[SummarizedExperiment]; }; - bacon = derive2 { name="bacon"; version="1.28.0"; sha256="1h2yh85c6d4j2abdh5l7m6zcxh9i5xzrwwjkwas4nfs48h74z293"; depends=[BiocParallel ellipse ggplot2]; }; - ballgown = derive2 { name="ballgown"; version="2.32.0"; sha256="05lvpvy4gs3vg4ks23prx0mdp730h1m9kpg4al03ah062gyq3ahx"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges limma RColorBrewer rtracklayer S4Vectors sva]; }; - bambu = derive2 { name="bambu"; version="3.2.6"; sha256="0h7ps32vbcn4hjpfb343nn8b50zq9my0k61847fi69vc4siwcx5k"; depends=[BiocGenerics BiocParallel BSgenome data_table dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rcpp RcppArmadillo Rsamtools S4Vectors SummarizedExperiment tidyr xgboost]; }; - bamsignals = derive2 { name="bamsignals"; version="1.32.0"; sha256="18058j3fc47qcwvzgpb8mbc7cd1pywzrz3a36iqz93ihzjmymydk"; depends=[BiocGenerics GenomicRanges IRanges Rcpp Rhtslib zlibbioc]; }; - bandle = derive2 { name="bandle"; version="1.4.1"; sha256="0zsrj6jbmyrsw0i69f38rr56qywcp4yy9b2zkhmbm1g1byy5rm3b"; depends=[BH Biobase BiocParallel BiocStyle circlize dplyr ggalluvial ggplot2 ggrepel knitr lbfgs MSnbase plyr pRoloc pRolocdata Rcpp RcppArmadillo rlang robustbase S4Vectors tidyr]; }; - banocc = derive2 { name="banocc"; version="1.24.0"; sha256="0yi70y87isb34jc1wrnz4gr0d0f2zw44555s50j3qdnj1x8cld9y"; depends=[coda mvtnorm rstan stringr]; }; - barcodetrackR = derive2 { name="barcodetrackR"; version="1.8.0"; sha256="155lxqqq2mgrz9i04xvv8y7gh2iacw6qd3mzijzbvrbm605qb3p8"; depends=[circlize cowplot dplyr ggdendro ggplot2 ggridges magrittr plyr proxy RColorBrewer rlang S4Vectors scales shiny SummarizedExperiment tibble tidyr vegan viridis]; }; - basecallQC = derive2 { name="basecallQC"; version="1.24.0"; sha256="0s29l6n3jlqxydaf1b94jfa68h3gj2844sqbbg68zxjr77zy8qsp"; depends=[data_table dplyr DT ggplot2 knitr lazyeval magrittr prettydoc raster rmarkdown ShortRead stringr tidyr XML yaml]; }; - basilisk = derive2 { name="basilisk"; version="1.12.1"; sha256="0bg6jfl12jsmhgby7x7g2vfmi61rx0jdksi97hb0zajgh1nvhirh"; depends=[basilisk_utils dir_expiry reticulate]; }; - basilisk_utils = derive2 { name="basilisk.utils"; version="1.12.1"; sha256="0g5apvna9wzjlm7g9hdafy44nrg5rp3qh4anwpgwwp2vr0vxn37k"; depends=[dir_expiry]; }; - batchelor = derive2 { name="batchelor"; version="1.16.0"; sha256="1cswij2mdjsdh99rmyh68wscg6h7cs0cff69gnki4gzzjfxy8x3f"; depends=[beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats igraph Matrix Rcpp ResidualMatrix S4Vectors ScaledMatrix scuttle SingleCellExperiment SummarizedExperiment]; }; - bayNorm = derive2 { name="bayNorm"; version="1.18.1"; sha256="1r6vx5h83hk386af1ih7vgk75x06czviqdd9456g8f59d0b20184"; depends=[BB BiocParallel doSNOW fitdistrplus foreach iterators locfit MASS Matrix Rcpp RcppArmadillo RcppProgress SingleCellExperiment SummarizedExperiment]; }; - bcSeq = derive2 { name="bcSeq"; version="1.22.0"; sha256="0avdp2b58nhxhrf89p8982s006swhbrmbhfjnw2xgnrzp9b6zdan"; depends=[Biostrings Matrix Rcpp]; }; - beachmat = derive2 { name="beachmat"; version="2.16.0"; sha256="0ga9y9npl885jdx7gw5h6lh7fr0z5p7cvcwpz3hvwm4dy235j6gj"; depends=[BiocGenerics DelayedArray Matrix Rcpp]; }; - beadarray = derive2 { name="beadarray"; version="2.50.0"; sha256="0rd41193rq6v4a97ibp0l2bz140nsv91plhn7iim8d8n9hgxqhjp"; depends=[AnnotationDbi BeadDataPackR Biobase BiocGenerics GenomicRanges ggplot2 hexbin illuminaio IRanges limma reshape2]; }; - beadarraySNP = derive2 { name="beadarraySNP"; version="1.66.0"; sha256="1pymsm4j3wiyjvgsjb3vhjwdvhfmh91pxdhg4ihrj71pqpif3w9m"; depends=[Biobase quantsmooth]; }; - beer = derive2 { name="beer"; version="1.4.0"; sha256="085jix8mdlh06r93708h28jifrag36vsx5zrjb6a97az5x2jyisy"; depends=[BiocParallel cli edgeR PhIPData progressr rjags SummarizedExperiment]; }; - benchdamic = derive2 { name="benchdamic"; version="1.6.4"; sha256="1dz38pnk3j09fdgvcjgdcyg1ssir1kcyf6zppa9di17acrnlcqni"; depends=[ALDEx2 ANCOMBC BiocParallel corncob cowplot dearseq DESeq2 edgeR ggdendro ggplot2 ggridges GUniFrac limma lme4 Maaslin2 MAST metagenomeSeq MGLM MicrobiomeStat NOISeq phyloseq plyr RColorBrewer reshape2 Seurat SummarizedExperiment tidytext TreeSummarizedExperiment zinbwave]; }; - bgx = derive2 { name="bgx"; version="1.66.0"; sha256="1g6k3ryj8dz17asa4imnrk77z4dk9an5ssrqr17r0g797d5f4qjm"; depends=[affy Biobase gcrma Rcpp]; }; - bigPint = derive2 { name="bigPint"; version="1.15.0"; sha256="1r9gr5f9as09ifagal5k7713h95qjw508cf8ny3j1jmqd24v6xhs"; depends=[DelayedArray dplyr GGally ggplot2 gridExtra hexbin Hmisc htmlwidgets plotly plyr RColorBrewer reshape shiny shinycssloaders shinydashboard stringr SummarizedExperiment tidyr]; }; - bigmelon = derive2 { name="bigmelon"; version="1.26.0"; sha256="1l1ym89qqbq6qx07bm2p8gcl5zd9xh0nbw10fb7s0pfbrkj8xy64"; depends=[Biobase BiocGenerics gdsfmt GEOquery illuminaio methylumi minfi wateRmelon]; }; - bioCancer = derive2 { name="bioCancer"; version="1.28.0"; sha256="0iz8qbbbdi01nrbni3cygzd0jrgj77fz30lvzf3blxgkpk3cbdk2"; depends=[AlgDesign AnnotationDbi Biobase clusterProfiler DiagrammeR DOSE dplyr DT geNetClassifier GO_db htmlwidgets httr org_Bt_eg_db org_Hs_eg_db plyr r_import R_methodsS3 R_oo radiant_data reactome_db ReactomePA shiny shinythemes tibble visNetwork XML]; }; - bioDist = derive2 { name="bioDist"; version="1.72.0"; sha256="1mx4abv7p76qsa0yzj0b4d03xklx09im01bx02lwa1w527gdmfc3"; depends=[Biobase KernSmooth]; }; - bioassayR = derive2 { name="bioassayR"; version="1.38.0"; sha256="0ilwniyrp3m8mi1vmggd17f9g6wdw7a78l2db190w29alzpbfmp6"; depends=[BiocGenerics ChemmineR DBI Matrix rjson RSQLite XML]; }; - biobroom = derive2 { name="biobroom"; version="1.32.0"; sha256="0kb6ylq94vywfky0mcrva109darcv361sqvwb19qn92p8vh5199l"; depends=[Biobase broom dplyr tidyr]; }; - biobtreeR = derive2 { name="biobtreeR"; version="1.12.0"; sha256="0cbhlxh0w736695niyjd59fcvplna2f2x2av9k0sd1r3dy6lrcd4"; depends=[httpuv httr jsonlite stringi]; }; - biocGraph = derive2 { name="biocGraph"; version="1.62.0"; sha256="0fnncmi82qb9lkg1zfyps7n3nrw1s3wcqbixh420w53hmdyryryl"; depends=[BiocGenerics geneplotter graph Rgraphviz]; }; - biocViews = derive2 { name="biocViews"; version="1.68.2"; sha256="1icnaj1ifndym7nl1yafzd0y0fxyhzjyb4qzqpcnsqhh4yi3pnm5"; depends=[Biobase BiocManager graph RBGL RCurl RUnit XML]; }; - biocthis = derive2 { name="biocthis"; version="1.10.3"; sha256="1v0qrypdzl1bg85k8i7qamb6709cgk4ypmisjh6bn5r36nqd5qx4"; depends=[BiocManager fs glue rlang styler usethis]; }; - biodb = derive2 { name="biodb"; version="1.8.1"; sha256="18j70ma85qb42qqpzz8fw3g4x6cav4j0pc2ab5ym22791dr8izck"; depends=[BiocFileCache chk git2r jsonlite lgr lifecycle openssl plyr progress R6 rappdirs Rcpp RCurl RSQLite stringr testthat withr XML yaml]; }; - biodbChebi = derive2 { name="biodbChebi"; version="1.6.0"; sha256="1c4955rj8g03kjdr8x4296vz8spj957b65dmy8dw2f56ph1wc6aj"; depends=[biodb R6]; }; - biodbExpasy = derive2 { name="biodbExpasy"; version="1.4.0"; sha256="0gwfs6b3ppas26k555pj9yjs949a7zxznbnkr0hn0x927z2lq60r"; depends=[biodb chk R6 stringr]; }; - biodbHmdb = derive2 { name="biodbHmdb"; version="1.6.1"; sha256="173wpnxdq3146ynr913wb0zscg2ga2w3jjv23v044vcjamwhh15p"; depends=[biodb R6 Rcpp testthat zip]; }; - biodbKegg = derive2 { name="biodbKegg"; version="1.6.1"; sha256="0dnl26cvqy0v61aj1ddcbkqiz254n8vsrpy1hmkn7d1jrlkqsp4w"; depends=[biodb chk lifecycle R6]; }; - biodbLipidmaps = derive2 { name="biodbLipidmaps"; version="1.6.0"; sha256="1j3ywrg1hilgx2d8a81y46s6x2yb03014i3dma5fjf5r9fhans03"; depends=[biodb lifecycle R6]; }; - biodbMirbase = derive2 { name="biodbMirbase"; version="1.4.0"; sha256="09w4pckjg26333z6j27f1pw1bkxw4793fyk8q04b8ww1fnd7znr2"; depends=[biodb chk R6 stringr]; }; - biodbNcbi = derive2 { name="biodbNcbi"; version="1.4.0"; sha256="0j7gaj847zjpxvgr7hbp0arlxl1p5cszg5vfvw8y047ryiqqf4jd"; depends=[biodb chk R6 XML]; }; - biodbNci = derive2 { name="biodbNci"; version="1.4.0"; sha256="1fz2qcc1v66400aqvwvd1m20i9r0pzagzaqwvn4qja5szsmgl52w"; depends=[biodb chk R6 Rcpp testthat]; }; - biodbUniprot = derive2 { name="biodbUniprot"; version="1.6.0"; sha256="115rird64jjs83yk56s6y5fkn7lgkikfyxad85ygmi4srrychp3v"; depends=[biodb R6]; }; - biomaRt = derive2 { name="biomaRt"; version="2.56.1"; sha256="0jqv2mv4ridi5lffva20a5s479bzpxhblyymricb17fd400rag8f"; depends=[AnnotationDbi BiocFileCache digest httr progress rappdirs stringr XML xml2]; }; - biomformat = derive2 { name="biomformat"; version="1.28.0"; sha256="04kl2432wq6ybdhispvp98ylgyk3kkhmjx1nxdvcal7bfpy2vskk"; depends=[jsonlite Matrix plyr rhdf5]; }; - biosigner = derive2 { name="biosigner"; version="1.28.0"; sha256="19sl75168zv6qqmgsfnhcyw1z0lp0phmky40lsl6bbmy4k2hfw38"; depends=[Biobase e1071 MultiAssayExperiment MultiDataSet randomForest ropls SummarizedExperiment]; }; - biotmle = derive2 { name="biotmle"; version="1.24.0"; sha256="1hjkhwbld8m52lsy2ba6cnp02n0xykaxm9650r5zmzry38dw9nb5"; depends=[assertthat BiocGenerics BiocParallel dplyr drtmle ggplot2 ggsci limma S4Vectors SummarizedExperiment superheat tibble]; }; - biovizBase = derive2 { name="biovizBase"; version="1.48.0"; sha256="0na37f2nfavgxd2xhprfb6bv68zm2h6glbkffspc3gsnw1q5h6da"; depends=[AnnotationDbi AnnotationFilter BiocGenerics Biostrings dichromat ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Hmisc IRanges RColorBrewer rlang Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; - biscuiteer = derive2 { name="biscuiteer"; version="1.14.0"; sha256="07nak6mfw9m8ldl336sqgkl3638ibv1hxwd89hwxdrn914wz3hw3"; depends=[Biobase BiocGenerics BiocParallel biscuiteerData bsseq data_table DelayedMatrixStats dmrseq GenomeInfoDb GenomicRanges gtools HDF5Array Homo_sapiens impute IRanges Matrix matrixStats Mus_musculus QDNAseq qualV R_utils readr Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; - blacksheepr = derive2 { name="blacksheepr"; version="1.14.0"; sha256="1m4d4hr30x3m1x6s5fyjj3vai5mfsgqws2iw9rx9m0pa847hyr8f"; depends=[circlize ComplexHeatmap pasilla RColorBrewer SummarizedExperiment viridis]; }; - blima = derive2 { name="blima"; version="1.34.0"; sha256="1d6v4w0zkkchkjmgg5vlwln9vbc6ibnkbwgj8alc65f1x0myd61h"; depends=[beadarray Biobase BiocGenerics Rcpp]; }; - bluster = derive2 { name="bluster"; version="1.10.0"; sha256="15f103lpl686730vl8g69fhki9iq2ncgr5dm6qm2xc9bq9vh65s9"; depends=[BiocNeighbors BiocParallel cluster igraph Matrix Rcpp S4Vectors]; }; - bnbc = derive2 { name="bnbc"; version="1.22.0"; sha256="0h9x3fadlgpnl71xi2m6s3xqxnj7wydjgn6nxx210lwkn0c6l4c9"; depends=[BiocGenerics data_table EBImage GenomeInfoDb GenomicRanges IRanges matrixStats preprocessCore Rcpp rhdf5 S4Vectors SummarizedExperiment sva]; }; - bnem = derive2 { name="bnem"; version="1.8.0"; sha256="1gjp480niqv6n3xwk5ljpirnj5ncxzq1dbnmxac9n90nqf8vvsq1"; depends=[affy binom Biobase CellNOptR cluster epiNEM flexclust graph limma matrixStats mnem RColorBrewer Rgraphviz rmarkdown snowfall sva vsn]; }; - borealis = derive2 { name="borealis"; version="1.4.0"; sha256="0qnr4rr9jzxmv041qp2j1phppxbir7d15yxsbxlyhppvcipm0qx0"; depends=[Biobase bsseq cowplot doParallel dplyr DSS foreach gamlss gamlss_dist GenomicRanges ggplot2 plyr purrr R_utils rlang snow]; }; - brainflowprobes = derive2 { name="brainflowprobes"; version="1.14.0"; sha256="1v4g08wv2h6j5fr8hsipcw5swlb776ni7aicrsnkv478c822aqmj"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 bumphunter cowplot derfinder derfinderPlot GenomicRanges GenomicState ggplot2 RColorBrewer]; }; - branchpointer = derive2 { name="branchpointer"; version="1.26.0"; sha256="1ndjs7cgs83n3y4724r9vsdri2pi5zcn1gyp0daq9f2cgp1gkxzh"; depends=[biomaRt Biostrings BSgenome_Hsapiens_UCSC_hg38 caret cowplot data_table gbm GenomeInfoDb GenomicRanges ggplot2 IRanges kernlab plyr rtracklayer S4Vectors stringr]; }; - breakpointR = derive2 { name="breakpointR"; version="1.18.0"; sha256="001n99lilymgqxmpi4v89gw60j1mx13rvppv1ff1pbnk1zcmg53n"; depends=[BiocGenerics breakpointRdata cowplot doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges Rsamtools S4Vectors]; }; - brendaDb = derive2 { name="brendaDb"; version="1.14.0"; sha256="1kvb87cg9f3h7hnvxc2zgr9sxxcn0k09gmhp63g7szkqb41vkjyj"; depends=[BiocFileCache BiocParallel crayon dplyr magrittr purrr rappdirs Rcpp rlang stringr tibble tidyr]; }; - bsseq = derive2 { name="bsseq"; version="1.36.0"; sha256="1mvhh99h1l6f5rlz0fzqkjpz9hblj2rbv8nx4j9n93g8riz7wsi3"; depends=[beachmat Biobase BiocGenerics BiocParallel Biostrings BSgenome data_table DelayedArray DelayedMatrixStats GenomeInfoDb GenomicRanges gtools HDF5Array IRanges limma locfit permute R_utils Rcpp rhdf5 S4Vectors scales SummarizedExperiment]; }; - bugsigdbr = derive2 { name="bugsigdbr"; version="1.6.6"; sha256="14cn1yj44y39v0bq6db282lw0vj1janlmwkz2yxngg8lsz1m9w6n"; depends=[BiocFileCache vroom]; }; - bumphunter = derive2 { name="bumphunter"; version="1.42.0"; sha256="1xghz87702fg9r6n1igygf4ybb8mw8ff0i02qkx9jmm6vmmfhv18"; depends=[AnnotationDbi BiocGenerics doRNG foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges iterators limma locfit matrixStats S4Vectors]; }; - cBioPortalData = derive2 { name="cBioPortalData"; version="2.12.0"; sha256="0dhxjj63ddyjvh2s327336w6711c1a53kw7xiwwaxxmzqncrqik6"; depends=[AnVIL BiocFileCache digest dplyr GenomeInfoDb GenomicRanges httr IRanges MultiAssayExperiment RaggedExperiment readr RTCGAToolbox S4Vectors SummarizedExperiment TCGAutils tibble tidyr]; }; - cTRAP = derive2 { name="cTRAP"; version="1.18.0"; sha256="0qbzxkjw0l37b0xs2k54va236k56hl652j77yp06d2r451gl3k8h"; depends=[AnnotationDbi AnnotationHub binr cowplot data_table dplyr DT fastmatch fgsea ggplot2 ggrepel highcharter htmltools httr limma pbapply purrr qs R_utils readxl reshape2 rhdf5 rlang scales shiny shinycssloaders tibble]; }; - cageminer = derive2 { name="cageminer"; version="1.6.2"; sha256="1pmmgv8shjrrrddbgyfsjfip6wfr6i06xpwf7j8wp7azmgf8vrh5"; depends=[BioNERO GenomeInfoDb GenomicRanges ggbio ggplot2 ggtext IRanges reshape2 rlang]; }; - calm = derive2 { name="calm"; version="1.14.0"; sha256="07wnfspw81my0lsbpdxn8qh9flsm28b9w748cswbs42c7gffgjbp"; depends=[mgcv]; }; - canceR = derive2 { name="canceR"; version="1.34.0"; sha256="0agmw839frjz7zf1px7l8b0xk05gj2isgfvl88dwgxkww68vrpbb"; depends=[Biobase circlize Formula geNetClassifier GSEABase httr phenoTest plyr R_methodsS3 R_oo rpart RUnit survival tkrplot]; }; - cancerclass = derive2 { name="cancerclass"; version="1.44.0"; sha256="0bwrzqhfk6vma1pybmn7bs4asr8r2n3g8l2mmw93rqjb8p319shd"; depends=[binom Biobase]; }; - cardelino = derive2 { name="cardelino"; version="1.2.0"; sha256="0ivhqd3da23iy2qklk2nljkjjr943m9r2y1q51fphld33izmv64v"; depends=[combinat GenomeInfoDb GenomicRanges ggplot2 ggtree Matrix matrixStats pheatmap S4Vectors snpStats VariantAnnotation vcfR]; }; - casper = derive2 { name="casper"; version="2.34.0"; sha256="0p436vg2550d6gzgmmag9h4zjx21ph5r136cnjc7pzc0bawkck0p"; depends=[Biobase BiocGenerics coda EBarrays gaga GenomeInfoDb GenomicFeatures GenomicRanges gtools IRanges limma mgcv Rsamtools rtracklayer S4Vectors sqldf survival VGAM]; }; - categoryCompare = derive2 { name="categoryCompare"; version="1.44.0"; sha256="1vdvmwrhrdfmrns3pvwpqzg5266ivmh6jrrwj5c9854i8apz71if"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category colorspace GOstats graph GSEABase hwriter RCy3]; }; - cbaf = derive2 { name="cbaf"; version="1.22.0"; sha256="1w2mgka38135jraqxwywdlpnc5a91g229gb6kj6p49p9r82d2cwa"; depends=[BiocFileCache cBioPortalData genefilter gplots openxlsx RColorBrewer]; }; - cbpManager = derive2 { name="cbpManager"; version="1.8.4"; sha256="03qqgxkpdzwmnqrkkcm5a6q94v2yxanwh6z26qai4r4q4fgx0k0b"; depends=[basilisk dplyr DT htmltools jsonlite magrittr markdown plyr rapportools reticulate rintrojs rlang shiny shinyBS shinycssloaders shinydashboard vroom]; }; - ccImpute = derive2 { name="ccImpute"; version="1.2.1"; sha256="05k5k2bis7gf30nx3v6ci55dqhdj35h72jwamnbbdxfqznngqvil"; depends=[BiocParallel matrixStats Rcpp RcppEigen SIMLR]; }; - ccfindR = derive2 { name="ccfindR"; version="1.20.0"; sha256="13m376cq2lp4wa2mlmsisgcp84z21v4bn3clzlfialmavd04djlg"; depends=[ape gtools irlba Matrix RColorBrewer Rcpp RcppEigen Rdpack Rmpi Rtsne S4Vectors SingleCellExperiment SummarizedExperiment]; }; - ccmap = derive2 { name="ccmap"; version="1.26.0"; sha256="0nnacvshswa42apslyydfcsz7q09mzr8x24bp6ridgaanjw2h4f7"; depends=[AnnotationDbi BiocManager ccdata data_table doParallel foreach lsa xgboost]; }; - ccrepe = derive2 { name="ccrepe"; version="1.36.0"; sha256="0iqrz1gqaxv5scpxz0jpz2p35rs21r7rlkl0gxf3xfqs6p9gz5n3"; depends=[infotheo]; }; - ceRNAnetsim = derive2 { name="ceRNAnetsim"; version="1.12.0"; sha256="1vl5mlg5465i2z00w9f9jmbf7rrh3gxfnyq25x9ylyijb7jajz58"; depends=[dplyr furrr future ggplot2 ggraph igraph purrr rlang tibble tidygraph tidyr]; }; - celaref = derive2 { name="celaref"; version="1.18.0"; sha256="0gz2r57r4f0wlland1146fxj020w5md2w37c1kslzg4bywnhsbyg"; depends=[BiocGenerics DelayedArray dplyr ggplot2 magrittr MAST Matrix readr rlang S4Vectors SummarizedExperiment tibble]; }; - celda = derive2 { name="celda"; version="1.16.1"; sha256="0nz1xdpb9hp5rsvlq6lwrva53k6130vxxqxjjyvxx0l2944jidgd"; depends=[circlize ComplexHeatmap data_table dbscan DelayedArray digest doParallel enrichR foreach ggplot2 ggrepel gtable Matrix matrixStats MCMCprecision multipanelfigure plyr RColorBrewer Rcpp RcppEigen reshape2 Rtsne S4Vectors scales scater scran SingleCellExperiment stringr SummarizedExperiment uwot withr]; }; - cellHTS2 = derive2 { name="cellHTS2"; version="2.64.0"; sha256="0bjx2glka4fs9gj8w2h6sb3fwv8jh56rakd1j678arvcafwcw71w"; depends=[Biobase BiocGenerics Category genefilter GSEABase hwriter locfit RColorBrewer splots vsn]; }; - cellbaseR = derive2 { name="cellbaseR"; version="1.24.0"; sha256="1zpbkgqxrljgrpgh62l0w56fvkmlivgi61kws6h8hs6m2g8vkd9n"; depends=[BiocParallel data_table doParallel foreach httr jsonlite pbapply R_utils Rsamtools tidyr]; }; - cellity = derive2 { name="cellity"; version="1.28.0"; sha256="1n9i3vkc01fdv5fxwqnw2zd42wmn3n80ryidzzq874i77nid9mgl"; depends=[AnnotationDbi e1071 ggplot2 mvoutlier org_Hs_eg_db org_Mm_eg_db robustbase topGO]; }; - cellmigRation = derive2 { name="cellmigRation"; version="1.8.0"; sha256="1d1js0pvqlc59wpl9mdj0fjw2gx0bjs2p7v2si6rv6j03zz916ka"; depends=[doParallel FactoMineR FME foreach Hmisc matrixStats reshape2 sp SpatialTools tiff vioplot]; }; - cellscape = derive2 { name="cellscape"; version="1.24.0"; sha256="0g7way8s7xmdx8266vv4597znyh4kkmc1cvxg4i0x3wkv2rq4gac"; depends=[dplyr gtools htmlwidgets jsonlite plyr reshape2 stringr]; }; - cellxgenedp = derive2 { name="cellxgenedp"; version="1.4.1"; sha256="09dpynmm1xg7hgiq5jvxvrwalaks0p7cim1cfa737wzflspz3pmj"; depends=[curl dplyr DT httr jsonlite rjsoncons shiny]; }; - censcyt = derive2 { name="censcyt"; version="1.8.0"; sha256="0ql7k42z96swaizags3nijx92zjc64whi3c8a26hvjykpdhrzxwv"; depends=[BiocParallel broom_mixed diffcyt dirmult dplyr edgeR fitdistrplus lme4 magrittr MASS mice multcomp purrr rlang S4Vectors stringr SummarizedExperiment survival tibble tidyr]; }; - cfDNAPro = derive2 { name="cfDNAPro"; version="1.6.0"; sha256="05vbwdcgmffzldfk6g882lbfrygw25nhx6fgrbadphdw72q1ynrn"; depends=[BiocGenerics BSgenome_Hsapiens_NCBI_GRCh38 BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges magrittr plyranges quantmod rlang Rsamtools stringr tibble]; }; - cfTools = derive2 { name="cfTools"; version="1.0.0"; sha256="1ggvcsnqhf69559a3axpdszm41mvg60138lh2xlnsm0642f648wy"; depends=[basilisk BH GenomicRanges R_utils Rcpp]; }; - cghMCR = derive2 { name="cghMCR"; version="1.58.0"; sha256="1k87ax9wj0s6f2l83276rzykj8v0hgjsb4d8xq5h0a4zk5l5ncny"; depends=[BiocGenerics CNTools DNAcopy limma]; }; - chihaya = derive2 { name="chihaya"; version="1.0.0"; sha256="0607gk2hch3h57ax3c2g3a8247wksnlv4h5bk8a8hpjwy3vw3xvm"; depends=[DelayedArray HDF5Array Matrix Rcpp rhdf5 Rhdf5lib]; }; - chimeraviz = derive2 { name="chimeraviz"; version="1.26.0"; sha256="0y6lpaysicv24d1j4vkxcyc9n0i5kcgpqp8djgwzr4jdrjqshf77"; depends=[AnnotationDbi AnnotationFilter BiocStyle Biostrings checkmate data_table dplyr DT ensembldb GenomeInfoDb GenomicAlignments GenomicRanges graph gtools Gviz IRanges magick org_Hs_eg_db org_Mm_eg_db plyr RCircos RColorBrewer Rgraphviz rmarkdown Rsamtools S4Vectors]; }; - chipenrich = derive2 { name="chipenrich"; version="2.24.0"; sha256="1jvg3nsj9y29iggg2bn67dx5vc7llwzv6bq5zjs3cvyxj0vrlhr5"; depends=[AnnotationDbi BiocGenerics chipenrich_data GenomeInfoDb GenomicRanges IRanges lattice latticeExtra MASS mgcv org_Dm_eg_db org_Dr_eg_db org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db plyr rms rtracklayer S4Vectors stringr]; }; - chipseq = derive2 { name="chipseq"; version="1.50.0"; sha256="0q83c4dm9qbdxlh4cbdzp357fn4sa16d7dqb4s65650pcnjg3a48"; depends=[BiocGenerics GenomicRanges IRanges lattice S4Vectors ShortRead]; }; - chopsticks = derive2 { name="chopsticks"; version="1.66.0"; sha256="107n1vm0jflcbk6m8zn15a06njx84gc82jjqxwm2d3b53l129xbc"; depends=[survival]; }; - chromDraw = derive2 { name="chromDraw"; version="2.30.0"; sha256="0xpabfz4xdrx74yhrnngijqprmzfhq9nzqav2qx5jgcaj3d42v7i"; depends=[GenomicRanges Rcpp]; }; - chromPlot = derive2 { name="chromPlot"; version="1.28.0"; sha256="0pdinyb4m9c4r7hiii421nmpqqgys60x0sr1p24h3ff0alpgdl26"; depends=[biomaRt GenomicRanges]; }; - chromVAR = derive2 { name="chromVAR"; version="1.22.1"; sha256="001133rfcwmf4p3dbif933y9i1mkr3krw38g646wj4ikycszwih4"; depends=[BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicRanges ggplot2 IRanges Matrix miniUI nabor plotly RColorBrewer Rcpp RcppArmadillo Rsamtools Rtsne S4Vectors shiny SummarizedExperiment TFBSTools]; }; - chromstaR = derive2 { name="chromstaR"; version="1.26.0"; sha256="1qrcmydk080m1rzwbzx2km4vpbahnq5y73mrnpgjjjrxbndz9xz9"; depends=[bamsignals BiocGenerics chromstaRData doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges mvtnorm reshape2 Rsamtools S4Vectors]; }; - chromswitch = derive2 { name="chromswitch"; version="1.22.0"; sha256="007wa8980hkpja33ph3b3fjsjrf91cnwc0a7y4014k8xxmmgfdh7"; depends=[Biobase BiocParallel cluster dplyr GenomicRanges gplots IRanges lazyeval magrittr matrixStats NMF rtracklayer S4Vectors tidyr]; }; - cicero = derive2 { name="cicero"; version="1.18.0"; sha256="12zdygnwqjla99wzvvxzcmiwmh4v0rmnx4yix02gbj8xl4bxmm51"; depends=[assertthat Biobase BiocGenerics data_table dplyr FNN GenomicRanges ggplot2 glasso Gviz igraph IRanges Matrix monocle plyr reshape2 S4Vectors stringi stringr tibble tidyr VGAM]; }; - circRNAprofiler = derive2 { name="circRNAprofiler"; version="1.14.0"; sha256="0gagfm7v5bnnfj1zy6zf4cg91bj8nvv4vm38f3a1s4q2xc8pcvfj"; depends=[AnnotationHub Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 DESeq2 dplyr edgeR GenomeInfoDb GenomicRanges ggplot2 gwascat IRanges magrittr R_utils readr reshape2 rlang rtracklayer S4Vectors seqinr stringi stringr universalmotif]; }; - cisPath = derive2 { name="cisPath"; version="1.40.0"; sha256="0raqvpychjqc2bgsnwai5gmz1g2xsqnb3kpndc0na2wc7xqk9psw"; depends=[]; }; - cleanUpdTSeq = derive2 { name="cleanUpdTSeq"; version="1.38.0"; sha256="0fbg962x7qlk08gmni7nkwsc2djrk32hsr62kqmgl5n857z29dri"; depends=[Biostrings BSgenome BSgenome_Drerio_UCSC_danRer7 e1071 GenomeInfoDb GenomicRanges IRanges S4Vectors seqinr stringr]; }; - cleaver = derive2 { name="cleaver"; version="1.38.0"; sha256="10g7gyvnv4x1i8afczhdi1flah7i15spnkadd340l0fvmr9yi4ir"; depends=[Biostrings IRanges S4Vectors]; }; - clevRvis = derive2 { name="clevRvis"; version="1.0.0"; sha256="1s2ha2n06yz3hvxigjxm9xbrqrlw67b56sravkkws1x620a9n0d4"; depends=[colorspace colourpicker cowplot dplyr DT ggiraph ggnewscale ggplot2 ggraph htmlwidgets igraph magrittr patchwork purrr R_utils readr readxl shiny shinycssloaders shinydashboard shinyhelper shinyWidgets tibble]; }; - cliProfiler = derive2 { name="cliProfiler"; version="1.6.0"; sha256="0xrhi38zqr9wsamm38gk6sxms6nzgl28vinhnar2f300nv9195kp"; depends=[Biostrings BSgenome dplyr GenomicRanges ggplot2 rtracklayer S4Vectors]; }; - clippda = derive2 { name="clippda"; version="1.50.0"; sha256="1j1i4bkfsb547vazj9kdkjr32yabbmky05qxszsn82dc89qdyk0f"; depends=[Biobase lattice limma rgl scatterplot3d statmod]; }; - clipper = derive2 { name="clipper"; version="1.40.0"; sha256="0a2b5lz7lasir0jp2pn99zqjgdyq3ijqjw1as9mr5riwq1a1chq2"; depends=[Biobase corpcor graph gRbase igraph KEGGgraph Matrix qpgraph RBGL Rcpp]; }; - cliqueMS = derive2 { name="cliqueMS"; version="1.14.1"; sha256="1r40aky0925dkmavgvim32bz4xr7f677jbii4n7yawm25y74y97l"; depends=[BH igraph matrixStats MSnbase qlcMatrix Rcpp RcppArmadillo xcms]; }; - clst = derive2 { name="clst"; version="1.48.0"; sha256="078grv8brji6im2irr25kycsrx58p7m7fs16076spk1ac3zjzmsz"; depends=[lattice ROC]; }; - clstutils = derive2 { name="clstutils"; version="1.48.0"; sha256="16sk150yibqvz0nx2n5vivxmd56913myyb2j4jxcf5fg8vxrr1f2"; depends=[ape clst lattice rjson RSQLite]; }; - clustComp = derive2 { name="clustComp"; version="1.28.0"; sha256="0i153cf3qavg6pxs5k8g6jrz2mp26fj1qrywrjwrzaf4h575dwk7"; depends=[sm]; }; - clusterExperiment = derive2 { name="clusterExperiment"; version="2.20.0"; sha256="0h22zh6jpd2wsh6b9rnrmx8897aqlrsnw82kwphx8lay4r1vv706"; depends=[ape BiocGenerics BiocSingular cluster DelayedArray edgeR HDF5Array howmany kernlab limma locfdr Matrix matrixStats mbkmeans NMF phylobase pracma RColorBrewer Rcpp S4Vectors scales SingleCellExperiment stringr SummarizedExperiment zinbwave]; }; - clusterProfiler = derive2 { name="clusterProfiler"; version="4.8.3"; sha256="1kihrpa8cb2bqk5dck0w6yzgfpl72qxlrxwpidg1ar27q3ivz8w3"; depends=[AnnotationDbi DOSE downloader dplyr enrichplot GO_db GOSemSim gson magrittr plyr qvalue rlang tidyr yulab_utils]; }; - clusterStab = derive2 { name="clusterStab"; version="1.72.0"; sha256="0imx4jfi2cjriy30cvmskfhkyrjn6s4wj6sw33v9zkqracfxnhzk"; depends=[Biobase]; }; - clustifyr = derive2 { name="clustifyr"; version="1.12.0"; sha256="0i6gs7mvxav8wpj4bsslcgdwlaih2p1f5yfwdgbi3n36b6giirv5"; depends=[cowplot dplyr entropy fgsea ggplot2 httr Matrix matrixStats proxy readr rlang S4Vectors scales SingleCellExperiment stringr SummarizedExperiment tibble tidyr]; }; - cmapR = derive2 { name="cmapR"; version="1.12.0"; sha256="1pkigc8a0a0cjn0hxirjr50a1zs7ig3crm7rrs2gw0zjvzvkmsgc"; depends=[data_table flowCore matrixStats rhdf5 SummarizedExperiment]; }; - cn_farms = derive2 { name="cn.farms"; version="1.48.0"; sha256="14vay8fk6irvby8qnygv5vd2jsj8dx70nynhcr8cq90rqyj3ha5b"; depends=[affxparser Biobase DBI DNAcopy ff lattice oligo oligoClasses preprocessCore snow]; }; - cn_mops = derive2 { name="cn.mops"; version="1.46.0"; sha256="0z2qn5j5bd20bc21wy1il3x917q4cw1gnyhis11dm529hmfd7ylz"; depends=[Biobase BiocGenerics exomeCopy GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; - cnvGSA = derive2 { name="cnvGSA"; version="1.44.0"; sha256="1nxf35rv4374n4qcsvmjig5y5g7ymwvmbqyflx1fcy0dlyrdx0a6"; depends=[brglm doParallel foreach GenomicRanges splitstackshape]; }; - coGPS = derive2 { name="coGPS"; version="1.44.0"; sha256="1g1v2rcmi4xbhadf6chliayrjcvqy4gkmr25m06x7zlxxjfi4hfg"; depends=[]; }; - coMET = derive2 { name="coMET"; version="1.32.0"; sha256="16yfn9xhjlvik75hl3md51sn3hr4pz615sfiihsk587n33571iyw"; depends=[biomaRt corrplot GenomicRanges gridExtra Gviz hash IRanges psych rtracklayer S4Vectors]; }; - coMethDMR = derive2 { name="coMethDMR"; version="1.4.0"; sha256="0jkayx2aw3z4yjkiyz9c3bws98vh9n6qpg9iryrzs3s3hi3xzm8l"; depends=[AnnotationHub BiocParallel bumphunter ExperimentHub GenomicRanges IRanges lmerTest]; }; - coRdon = derive2 { name="coRdon"; version="1.18.0"; sha256="1qisxv0i05dcsf9nxgbwhswzxrckrabz5jzh78fnh7x9hh7rsd62"; depends=[Biobase Biostrings data_table dplyr ggplot2 purrr stringr]; }; - codelink = derive2 { name="codelink"; version="1.68.0"; sha256="0gsdkzdgi4l34i9jk4b2h10rniwm0w0h7m5p1i8v20j7dlnihhs4"; depends=[annotate Biobase BiocGenerics limma]; }; - cogena = derive2 { name="cogena"; version="1.34.0"; sha256="1gfkbj3b7j1hd0y0s5fp00hq1lllxhpirjaxphhhaj8vhvh5xpy8"; depends=[amap apcluster Biobase biwt class cluster corrplot devtools doParallel dplyr fastcluster foreach ggplot2 gplots kohonen mclust reshape2 stringr tibble tidyr]; }; - cogeqc = derive2 { name="cogeqc"; version="1.4.1"; sha256="02gh0ky3fzkdzg0j09v31l7zcmncx0i7a39filfydnky69i362l2"; depends=[Biostrings ggbeeswarm ggplot2 ggtree igraph jsonlite patchwork reshape2 rlang scales]; }; - cola = derive2 { name="cola"; version="2.6.0"; sha256="104l0dnav1z9kk2r1a0hyqcm230cgpkcap4dng9a0r6vsd5bvz8k"; depends=[BiocGenerics brew circlize clue cluster ComplexHeatmap crayon digest doParallel doRNG eulerr foreach GetoptLong GlobalOptions httr impute irlba knitr markdown matrixStats mclust microbenchmark png RColorBrewer Rcpp skmeans xml2]; }; - comapr = derive2 { name="comapr"; version="1.4.0"; sha256="0w4jajd088bxf664ajs5cfgq14hn5xfdsydsrsnb97jv8jhjxc19"; depends=[BiocParallel circlize dplyr foreach GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz IRanges Matrix plotly plyr RColorBrewer reshape2 rlang S4Vectors scales SummarizedExperiment tidyr]; }; - combi = derive2 { name="combi"; version="1.12.1"; sha256="1ax4vsj0pwm5xzp01mgmm8vx2w6sz8fl0fiwwbkrgnbnmkd2gfjh"; depends=[alabama BB Biobase cobs DBI ggplot2 limma Matrix nleqslv phyloseq reshape2 SummarizedExperiment tensor vegan]; }; - compEpiTools = derive2 { name="compEpiTools"; version="1.34.1"; sha256="13v6qysss04v4lbabjbzvr0hm2cfl2f9rid8s7hgkrcggq3dv5mk"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges GO_db gplots IRanges methylPipe Rsamtools S4Vectors topGO XVector]; }; - compartmap = derive2 { name="compartmap"; version="1.18.0"; sha256="0lvgwnp5cgn96m9y4snpczfbfs72lxbaa36lnmwa7j07jy4s9108"; depends=[BiocSingular DelayedArray DelayedMatrixStats GenomicRanges ggplot2 HDF5Array Matrix RaggedExperiment reshape2 RMTstat rtracklayer scales SummarizedExperiment]; }; - compcodeR = derive2 { name="compcodeR"; version="1.36.2"; sha256="043kjci1a4ccisv794x5ipj6w9bfb9y57l3s9lm9w1adyldybmq0"; depends=[ape caTools edgeR ggplot2 gplots gtools KernSmooth knitr lattice limma markdown MASS matrixStats modeest phylolm ROCR sm stringr vioplot]; }; - concordexR = derive2 { name="concordexR"; version="1.0.0"; sha256="1n5wa3cgbly5k9jzrdv4zm3k1aqzm1h5hmf5dlvri9l14skiz1p3"; depends=[BiocParallel cli DelayedArray ggplot2 Matrix pheatmap rlang scales]; }; - condiments = derive2 { name="condiments"; version="1.8.0"; sha256="1nn746a8jvi45zpcpdw03win26zijr5wgq1q7b2ank6rlvb7alj3"; depends=[BiocParallel distinct dplyr Ecume igraph magrittr matrixStats mgcv pbapply RANN SingleCellExperiment slingshot SummarizedExperiment TrajectoryUtils]; }; - consICA = derive2 { name="consICA"; version="1.2.0"; sha256="1sz5p9rvmzwxp3qnnl22zn2h9pma96ybgn5zp0c1baibrijy3w5k"; depends=[BiocParallel fastICA GO_db graph org_Hs_eg_db pheatmap sm SummarizedExperiment survival topGO]; }; - consensus = derive2 { name="consensus"; version="1.18.0"; sha256="0y6nlxqkg3skh7fayk1ibys0p7nppg39859sws5prbr1gc4pkyj1"; depends=[gplots matrixStats RColorBrewer]; }; - consensusDE = derive2 { name="consensusDE"; version="1.18.0"; sha256="1k3k08mavysdfpc7fzhisq9idphscmk9zvmsqipwixkz6n8g6p8s"; depends=[airway AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings data_table dendextend DESeq2 EDASeq edgeR EnsDb_Hsapiens_v86 ensembldb GenomicAlignments GenomicFeatures limma org_Hs_eg_db pcaMethods RColorBrewer Rsamtools RUVSeq S4Vectors SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm3_ensGene]; }; - consensusOV = derive2 { name="consensusOV"; version="1.22.0"; sha256="1df82gjnj2myv571q08y2sadgyhcvzl9fnsjrqn6a1grjqmkvax1"; depends=[Biobase gdata genefu GSVA limma matrixStats randomForest]; }; - consensusSeekeR = derive2 { name="consensusSeekeR"; version="1.28.0"; sha256="0nk0ykwkyilcj464nw0vp2zbaj8b1hfpgbj83myn548rp959im1g"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges IRanges rtracklayer S4Vectors stringr]; }; - contiBAIT = derive2 { name="contiBAIT"; version="1.28.0"; sha256="1flk77zilm54jq3d454ihkvqnsqxmxn8wybrzgq5qy9k0a10x3ic"; depends=[BH BiocGenerics BiocParallel clue cluster colorspace data_table diagram DNAcopy exomeCopy GenomicAlignments GenomicFiles GenomicRanges ggplot2 gplots gtools IRanges Rcpp reshape2 Rsamtools rtracklayer S4Vectors TSP]; }; - conumee = derive2 { name="conumee"; version="1.34.0"; sha256="1ixfwjkd9q79zpinbgn60krdmqhdb042bxnzifb9h351dlhl496r"; depends=[DNAcopy GenomeInfoDb GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest IRanges minfi rtracklayer]; }; - convert = derive2 { name="convert"; version="1.76.0"; sha256="0b5q7va7wss3g3z17fp82z7559fmh25sn8bmmnvx9dlcdica51jj"; depends=[Biobase limma marray]; }; - copa = derive2 { name="copa"; version="1.68.0"; sha256="1dmbsns1b6kgd59gnjjm2ybg9fhd67ybba6bfaz58z7iw6x98jlz"; depends=[Biobase]; }; - corral = derive2 { name="corral"; version="1.10.0"; sha256="03jp84rlj0a6rs4ivp06x0p3rfgk6x8d4anp6jdkd4bp9rg52d73"; depends=[ggplot2 ggthemes gridExtra irlba Matrix MultiAssayExperiment pals reshape2 SingleCellExperiment SummarizedExperiment transport]; }; - coseq = derive2 { name="coseq"; version="1.24.0"; sha256="1i2p0mk95z8xvrqbqjg2bc3y48w34nl1rvch9bwjls52z92wk0jj"; depends=[BiocParallel capushe compositions corrplot DESeq2 e1071 edgeR ggplot2 HTSCluster HTSFilter mvtnorm Rmixmod S4Vectors scales SummarizedExperiment]; }; - cosmiq = derive2 { name="cosmiq"; version="1.34.0"; sha256="1l9y6zhhkd3mskq219ndqxbwvk5bg3k27q8wi18yjizv3spqyf2x"; depends=[faahKO MassSpecWavelet pracma Rcpp xcms]; }; - cosmosR = derive2 { name="cosmosR"; version="1.8.0"; sha256="185wp3akzxx62pszr45vlkbivvwbfcm4ai4d6j75rwgas89yzmwm"; depends=[CARNIVAL dorothea dplyr GSEABase igraph progress purrr rlang stringr visNetwork]; }; - countsimQC = derive2 { name="countsimQC"; version="1.18.0"; sha256="00b09sky4widp78vnawnvm1m0n90i45df0l41rrqj9h6kcfcsghc"; depends=[caTools DESeq2 dplyr DT edgeR genefilter GenomeInfoDbData ggplot2 ragg randtests rmarkdown SummarizedExperiment tidyr]; }; - covEB = derive2 { name="covEB"; version="1.26.0"; sha256="1sksnxl0a8n50bknnhpa95ap07lhgib422ixawqdmqm102w7rwzn"; depends=[Biobase gsl igraph LaplacesDemon Matrix mvtnorm]; }; - covRNA = derive2 { name="covRNA"; version="1.26.0"; sha256="1mb647nqih08i9ik24ngp3mj5il253n7sixd1g22zqm0qmhp1r5r"; depends=[ade4 Biobase genefilter]; }; - cpvSNP = derive2 { name="cpvSNP"; version="1.32.0"; sha256="0pvwnd8jgc40acgqa8sy928nl89pk0ybzd86awmbzmhbwzmsmjai"; depends=[BiocParallel corpcor GenomicFeatures ggplot2 GSEABase plyr]; }; - cqn = derive2 { name="cqn"; version="1.46.0"; sha256="19flrq8j9rn806akk7vv8zmg62hi28804752f7mphl54hc49f0md"; depends=[mclust nor1mix preprocessCore quantreg]; }; - crisprBase = derive2 { name="crisprBase"; version="1.4.0"; sha256="1xc2pafab5xxwj2m7rz0f1zwwd5rsyigjink3sf1fdgaazwxrf8z"; depends=[BiocGenerics Biostrings GenomicRanges IRanges S4Vectors stringr]; }; - crisprBowtie = derive2 { name="crisprBowtie"; version="1.4.0"; sha256="1isqnnxjdf4p25s8p4sbs1s6mn99rj7k5a1jjsxq43fnvvkx7fh1"; depends=[BiocGenerics Biostrings BSgenome crisprBase GenomeInfoDb GenomicRanges IRanges Rbowtie readr stringr]; }; - crisprBwa = derive2 { name="crisprBwa"; version="1.4.0"; sha256="1kvrjvh158qsi3gdrqskvhh0gbmmi2cvx5x2r7pfb4yd28rzp2r4"; depends=[BiocGenerics BSgenome crisprBase GenomeInfoDb Rbwa readr stringr]; }; - crisprDesign = derive2 { name="crisprDesign"; version="1.2.0"; sha256="1ljfb2qxzapdzp59aaj5cizwv1malszv0l60wci38yy9jqd6ryv8"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome crisprBase crisprBowtie crisprScore GenomeInfoDb GenomicFeatures GenomicRanges IRanges Matrix MatrixGenerics rtracklayer S4Vectors VariantAnnotation]; }; - crisprScore = derive2 { name="crisprScore"; version="1.4.0"; sha256="1bg5c6gq35pc1ja2jk6zys1s1a940sbq2hwmbgbv0zp5xk9b4j4c"; depends=[basilisk basilisk_utils BiocGenerics Biostrings crisprScoreData IRanges randomForest reticulate stringr XVector]; }; - crisprVerse = derive2 { name="crisprVerse"; version="1.2.0"; sha256="08bnvd0i0bjvzbsskd29vbpm427mgj9a03zxzgd4f2hhqsj3b9xa"; depends=[BiocManager cli crisprBase crisprBowtie crisprDesign crisprScore crisprScoreData crisprViz rlang]; }; - crisprViz = derive2 { name="crisprViz"; version="1.2.0"; sha256="08fhnkw6ca8h6pzsfr7lr8bl97w8ljiz7bgvlmmmmlzygvgbknx9"; depends=[BiocGenerics Biostrings BSgenome crisprBase crisprDesign GenomeInfoDb GenomicFeatures GenomicRanges Gviz IRanges S4Vectors]; }; - crisprseekplus = derive2 { name="crisprseekplus"; version="1.26.0"; sha256="1ccz944jwlcnflrdh1aamfc5b03n6pys65b13f049f0x214vqg68"; depends=[AnnotationDbi BiocManager BSgenome CRISPRseek DT GenomicFeatures GenomicRanges GUIDEseq hash shiny shinyjs]; }; - crlmm = derive2 { name="crlmm"; version="1.58.0"; sha256="02728x2dxs19s2qnb99jd9db1c35ml61dsw5rxmbr5p0mvnwl9wj"; depends=[affyio beanplot Biobase BiocGenerics ellipse ff foreach illuminaio lattice limma matrixStats mvtnorm oligoClasses preprocessCore RcppEigen VGAM]; }; - crossmeta = derive2 { name="crossmeta"; version="1.26.0"; sha256="0xq1zky9z5aj1dk1mqf1qyxdv6614rxc5ywwkfyrciz68m8n0cxn"; depends=[affxparser affy AnnotationDbi Biobase BiocGenerics BiocManager data_table DBI DT edgeR fdrtool GEOquery limma matrixStats metaMA miniUI oligo RCurl reader readxl RSQLite shiny shinyBS shinyjs shinypanel shinyWidgets stringr sva tibble XML]; }; - csaw = derive2 { name="csaw"; version="1.34.0"; sha256="1mybz738mg0yp2vigl71nwzda3qjqpyfqjsm56pfcv84q5kj90s8"; depends=[BiocGenerics BiocParallel edgeR GenomeInfoDb GenomicRanges IRanges limma Matrix metapod Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment zlibbioc]; }; - csdR = derive2 { name="csdR"; version="1.6.0"; sha256="0c8sbb9n5m92qnlbrvykqqqc0vmym64194w8f6si8wwf1fh8g9hv"; depends=[glue matrixStats Rcpp RhpcBLASctl WGCNA]; }; - ctc = derive2 { name="ctc"; version="1.74.0"; sha256="0ph22v1an2havnh9sm7hms0q2pq4fjad2cm4dffiy3344cv70sn1"; depends=[amap]; }; - ctsGE = derive2 { name="ctsGE"; version="1.26.0"; sha256="0b1jal31799jj7rhzzpkl1jxkk74a97p98by3ljy8pws07jgvb8j"; depends=[ccaPP ggplot2 limma reshape2 shiny stringr]; }; - cummeRbund = derive2 { name="cummeRbund"; version="2.42.0"; sha256="1xin1azby96xxp4yyd4wc3rfcjc2g9p01ksfd89bk2vxcclccqxn"; depends=[Biobase BiocGenerics fastcluster ggplot2 Gviz plyr reshape2 RSQLite rtracklayer S4Vectors]; }; - customCMPdb = derive2 { name="customCMPdb"; version="1.10.0"; sha256="0rg8i4msgapblzdxsc26sj4zwng282v89acanikzc59rw275sblm"; depends=[AnnotationHub BiocFileCache ChemmineR rappdirs RSQLite XML]; }; - customProDB = derive2 { name="customProDB"; version="1.40.0"; sha256="05k3ibdmh4av9g490jxw0rvpb9jydnwnvfy2q4269zfr5vr9yy0y"; depends=[AhoCorasickTrie AnnotationDbi biomaRt Biostrings DBI GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges plyr RCurl Rsamtools RSQLite rtracklayer S4Vectors stringr VariantAnnotation]; }; - cyanoFilter = derive2 { name="cyanoFilter"; version="1.8.0"; sha256="01pqivhl6m4wp116y1sfii4csg7fzxqwa1im8j4w4p08cdkh9191"; depends=[Biobase cytometree flowClust flowCore flowDensity GGally ggplot2 mrfDepth]; }; - cycle = derive2 { name="cycle"; version="1.54.0"; sha256="1d8a3w3pwf26mb2kh3np4p34sxz5hazizlq2znrczn9w7vdqhj2y"; depends=[Biobase Mfuzz]; }; - cydar = derive2 { name="cydar"; version="1.24.0"; sha256="14gkkc3q66ifrada2c388a6ys19pm951lkx9g08sqi5fz6bl3xhj"; depends=[Biobase BiocGenerics BiocNeighbors BiocParallel flowCore Rcpp S4Vectors shiny SingleCellExperiment SummarizedExperiment viridis]; }; - cytoKernel = derive2 { name="cytoKernel"; version="1.6.0"; sha256="10qhzcpacfa1w99fb03j6zz1sb85613q0ckvf3c4v4qkr0fz1mpn"; depends=[ashr BiocParallel circlize ComplexHeatmap data_table dplyr magrittr Rcpp rlang S4Vectors SummarizedExperiment]; }; - cytoMEM = derive2 { name="cytoMEM"; version="1.4.0"; sha256="0rqnin7asspszpcfrc76raicdbazrvbdynalbdd38spa8178fvqm"; depends=[flowCore gplots matrixStats]; }; - cytofQC = derive2 { name="cytofQC"; version="1.0.0"; sha256="0isfngah9bziwfbrlqqcg7h57cwpphxwv52xvgjvd970ch9bl598"; depends=[CATALYST e1071 EZtune flowCore gbm ggplot2 hrbrthemes matrixStats randomForest rmarkdown S4Vectors SingleCellExperiment ssc SummarizedExperiment]; }; - cytolib = derive2 { name="cytolib"; version="2.12.1"; sha256="0mfv259k92vz0g7zv8zir2av2nlmx6na1f6q9zyj24s18m7mrkqz"; depends=[BH Rhdf5lib RProtoBufLib]; }; - cytomapper = derive2 { name="cytomapper"; version="1.12.0"; sha256="1z3ic6w4pkysw546kh0ybwyj13wdd1a7ixa83ws200aydryybjmc"; depends=[BiocParallel DelayedArray EBImage ggbeeswarm ggplot2 HDF5Array matrixStats nnls raster RColorBrewer rhdf5 S4Vectors shiny shinydashboard SingleCellExperiment SpatialExperiment SummarizedExperiment svglite svgPanZoom viridis]; }; - cytoviewer = derive2 { name="cytoviewer"; version="1.0.1"; sha256="1ckgwp0gxiv92dd4g25b4fq9mk3xc27lslap0d165a0p2km6jzfl"; depends=[archive colourpicker cytomapper EBImage RColorBrewer S4Vectors shiny shinycssloaders shinydashboard SingleCellExperiment SummarizedExperiment svglite svgPanZoom viridis]; }; - dStruct = derive2 { name="dStruct"; version="1.6.0"; sha256="1bcmv30gj2rfzgwk9ncpbn5z0ra5jxpm94npw9nd6lz8gf6qmm74"; depends=[ggplot2 IRanges purrr reshape2 rlang S4Vectors zoo]; }; - daMA = derive2 { name="daMA"; version="1.72.0"; sha256="0z4y57hna312pkhkchair8calm7wl40rx8lcm8i6h1789hba063d"; depends=[MASS]; }; - dada2 = derive2 { name="dada2"; version="1.28.0"; sha256="1vxy2106rzygy0dr38wmw84zrqp9gsvaphliikdmhx0n2gv6xhd1"; depends=[BiocGenerics Biostrings ggplot2 IRanges Rcpp RcppParallel reshape2 ShortRead XVector]; }; - dagLogo = derive2 { name="dagLogo"; version="1.38.0"; sha256="02s1wnbzm0ggn5394s0cbkcs6fi7a82lg6f2n5ffjf56qyw5rnw7"; depends=[BiocGenerics biomaRt Biostrings httr motifStack pheatmap UniProt_ws]; }; - dasper = derive2 { name="dasper"; version="1.9.0"; sha256="095ldl40cay5n8lkp8y69lbmflhnbwm1b075s4zgpagn81awp0cn"; depends=[basilisk BiocFileCache BiocParallel data_table dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggpubr ggrepel IRanges magrittr megadepth plyranges readr reticulate rtracklayer S4Vectors stringr SummarizedExperiment tidyr]; }; - dcGSA = derive2 { name="dcGSA"; version="1.28.0"; sha256="0ms58r8bmn0cg0f9d665clwmz0vbc7h9yajray3a3dn6dmz9rpjn"; depends=[BiocParallel Matrix]; }; - dcanr = derive2 { name="dcanr"; version="1.16.0"; sha256="0r4xhl5z75pfaa7qgj5iaxx35130x80sxx6bpqnd3cg11726wwv9"; depends=[circlize doRNG foreach igraph Matrix plyr RColorBrewer reshape2 stringr]; }; - dce = derive2 { name="dce"; version="1.8.2"; sha256="00qyxjv6k8s92a01y6aslabyrpf8zvfph7ihhp2g4sy85b4dwk8v"; depends=[assertthat dplyr edgeR epiNEM expm ggplot2 ggraph glm2 glue graph graphite harmonicmeanp igraph logger magrittr MASS Matrix metap mnem naturalsort org_Hs_eg_db pcalg ppcor purrr reshape2 Rgraphviz rlang shadowtext tidygraph tidyverse]; }; - ddCt = derive2 { name="ddCt"; version="1.56.0"; sha256="1sz2r87mk0s16i8c0hag8b53s5hxj1zkr1p1m8vwj060qm0wjiav"; depends=[Biobase BiocGenerics lattice RColorBrewer xtable]; }; - ddPCRclust = derive2 { name="ddPCRclust"; version="1.20.0"; sha256="0ljbx8jf2v5pkvssp6psfhabk2v264xb9h3y5ny3rxm9zk3q3890"; depends=[clue flowCore flowDensity flowPeaks ggplot2 openxlsx plotrix R_utils SamSPECTRAL]; }; - dearseq = derive2 { name="dearseq"; version="1.12.1"; sha256="12ld1f3892ag1a3lmkwjlkk6pd79ibykg8jrmddx2x33k23cv67g"; depends=[CompQuadForm dplyr ggplot2 KernSmooth magrittr matrixStats patchwork pbapply reshape2 rlang scattermore statmod survey tibble viridisLite]; }; - debCAM = derive2 { name="debCAM"; version="1.18.0"; sha256="11vqfkyd3fklc8fhn850kklph8x4pmwclb9xbqji4i21222m89hh"; depends=[apcluster Biobase BiocParallel corpcor DMwR2 geometry NMF nnls pcaPP rJava SummarizedExperiment]; }; - debrowser = derive2 { name="debrowser"; version="1.28.3"; sha256="0y1c6pp2ihxznxbz228zwx7vy7r1zkl4am0bf17ahbkzccha0iiw"; depends=[annotate AnnotationDbi apeglm ashr clusterProfiler colourpicker DESeq2 DOSE DT edgeR enrichplot GenomicRanges ggplot2 gplots Harman heatmaply igraph IRanges jsonlite limma org_Hs_eg_db org_Mm_eg_db pathview plotly RColorBrewer RCurl reshape2 S4Vectors shiny shinyBS shinydashboard shinyjs stringi SummarizedExperiment sva]; }; - decompTumor2Sig = derive2 { name="decompTumor2Sig"; version="2.16.0"; sha256="028sczy1d108i05ymr1wpj6jdrcds476wbmmc7rzzflzyg4aix75"; depends=[BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg19 data_table GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggseqlogo gridExtra Matrix plyr quadprog readxl S4Vectors SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; - decontam = derive2 { name="decontam"; version="1.20.0"; sha256="08niwixy4m6gqmazisxzbbla9nsxicpa685jy3r6knapwaznvcb2"; depends=[ggplot2 reshape2]; }; - deconvR = derive2 { name="deconvR"; version="1.6.0"; sha256="1r5js5prwy1libnf1g1a4pdi15pj216bb8ajhzii3symn5r0cdj9"; depends=[assertthat BiocGenerics data_table dplyr e1071 foreach GenomicRanges IRanges magrittr MASS matrixStats methylKit minfi nnls quadprog rsq S4Vectors tidyr]; }; - decoupleR = derive2 { name="decoupleR"; version="2.6.0"; sha256="012d76jwgg6fwfjc00zdws59y6jbj0grzd4lgjrqs2afp2ycmh9s"; depends=[broom dplyr magrittr Matrix purrr rlang stringr tibble tidyr tidyselect withr]; }; - deepSNV = derive2 { name="deepSNV"; version="1.46.0"; sha256="11cnyy3hyn8akhmax25293mx2blcs8ba5vfax6mx6hjhb577hkwb"; depends=[Biostrings GenomicRanges IRanges Rhtslib SummarizedExperiment VariantAnnotation VGAM]; }; - deltaCaptureC = derive2 { name="deltaCaptureC"; version="1.14.0"; sha256="1xdi1znysn3gpkwr41psjfzyblhq8r0vab2qgjl2slznw39kla2x"; depends=[DESeq2 GenomicRanges ggplot2 IRanges SummarizedExperiment tictoc]; }; - deltaGseg = derive2 { name="deltaGseg"; version="1.40.0"; sha256="0wxf5sbd13yyyx5in4x153pd2zxp1r0k0r9k841x87shjqphy595"; depends=[changepoint fBasics ggplot2 pvclust reshape scales tseries wavethresh]; }; - demuxmix = derive2 { name="demuxmix"; version="1.2.0"; sha256="0hxxcl1kpxawi30zzsi68jqs4yhl67k6vw24f1n9lzji1izwjxl8"; depends=[ggplot2 gridExtra MASS Matrix]; }; - densvis = derive2 { name="densvis"; version="1.10.3"; sha256="1nkii02bj49z9qm3rj8lzwpz7dllrsa5zf7dn5ffcczyxr3b1ap9"; depends=[assertthat basilisk irlba Rcpp reticulate]; }; - derfinder = derive2 { name="derfinder"; version="1.34.0"; sha256="1gb65hk26ffn0njsgwgk43z9i9bcvx89pz5m9x951c2a07c1xrcw"; depends=[AnnotationDbi BiocGenerics BiocParallel bumphunter derfinderHelper GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges Hmisc IRanges qvalue Rsamtools rtracklayer S4Vectors]; }; - derfinderHelper = derive2 { name="derfinderHelper"; version="1.34.0"; sha256="0ww4lvwmm8rf44wgksg98bqh7zlm503c4gc8dwilb1w0dz2k7qll"; depends=[IRanges Matrix S4Vectors]; }; - derfinderPlot = derive2 { name="derfinderPlot"; version="1.34.0"; sha256="1zl067pwnv16s5lhf1qdg4nzxfdc3absk5jwpzzr09ss22wkyzb7"; depends=[derfinder GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 IRanges limma plyr RColorBrewer reshape2 S4Vectors scales]; }; - destiny = derive2 { name="destiny"; version="3.14.0"; sha256="0hc85dq68h7dy5jcflpjj05231ny7na9i4lksfsw89jhmxgzhacd"; depends=[Biobase BiocGenerics ggplot_multistats ggplot2 ggthemes irlba knn_covertree Matrix pcaMethods proxy Rcpp RcppEigen RcppHNSW RSpectra scales scatterplot3d SingleCellExperiment smoother SummarizedExperiment tidyr tidyselect VIM]; }; - diffGeneAnalysis = derive2 { name="diffGeneAnalysis"; version="1.82.0"; sha256="0wazhx9hghjd30h9k8l4ag7lpnijs6hlwyln9jvik5ywh3r60394"; depends=[minpack_lm]; }; - diffHic = derive2 { name="diffHic"; version="1.32.0"; sha256="0x86s7cppxmlq43mpdkn7va5by6qkd280ik6xgkpnbn243f84jpv"; depends=[BiocGenerics Biostrings BSgenome csaw edgeR GenomeInfoDb GenomicRanges InteractionSet IRanges limma locfit Rcpp rhdf5 Rhtslib Rsamtools rtracklayer S4Vectors SummarizedExperiment zlibbioc]; }; - diffUTR = derive2 { name="diffUTR"; version="1.8.0"; sha256="1n1lzflmzxj6wdsf8nhkv6dlsx19imc44lnminlw11lbwnzrk0yy"; depends=[ComplexHeatmap DEXSeq dplyr edgeR ensembldb GenomeInfoDb GenomicRanges ggplot2 ggrepel IRanges limma matrixStats Rsubread rtracklayer S4Vectors stringi SummarizedExperiment viridisLite]; }; - diffcoexp = derive2 { name="diffcoexp"; version="1.20.0"; sha256="1jvm3f6xdmdkkkjylpa00fb7110yrb5as63ilhz7jp6g8wc683z4"; depends=[BiocGenerics DiffCorr igraph psych SummarizedExperiment WGCNA]; }; - diffcyt = derive2 { name="diffcyt"; version="1.20.0"; sha256="1vsn9z06vmfw6741x7dri3d9wh4rqhzak9r506y3c3h2gjjwilv1"; depends=[circlize ComplexHeatmap dplyr edgeR flowCore FlowSOM limma lme4 magrittr multcomp reshape2 S4Vectors SummarizedExperiment tidyr]; }; - diffuStats = derive2 { name="diffuStats"; version="1.20.0"; sha256="14228dmykyrj8v3zgwh82xj0i5dhr6mkj181rv3pfpcmcgwrmbgf"; depends=[checkmate expm igraph MASS Matrix plyr precrec Rcpp RcppArmadillo RcppParallel]; }; - diggit = derive2 { name="diggit"; version="1.32.0"; sha256="1xkvi8gbsdinr7j8qr1rc4rp8ynim1zd1i876gxsn1887avzzq19"; depends=[Biobase ks viper]; }; - dir_expiry = derive2 { name="dir.expiry"; version="1.8.0"; sha256="1vccq28734s7zk7pc7i9zq4rzbi373xqqvgkzamjpii36phkdmlw"; depends=[filelock]; }; - discordant = derive2 { name="discordant"; version="1.24.0"; sha256="1c3qfj6yx6pnpjzm6lgs4ark3dlw21amkxcnrzqi4qxdl2r5jkgn"; depends=[Biobase biwt dplyr gtools MASS Rcpp]; }; - distinct = derive2 { name="distinct"; version="1.12.2"; sha256="1yzsnjcwh4l8iy7hx9zhgx2kxdfvszc60dahgd1sx6mmybcg89zv"; depends=[doParallel doRNG foreach ggplot2 limma Matrix Rcpp RcppArmadillo Rfast scater SingleCellExperiment SummarizedExperiment]; }; - dittoSeq = derive2 { name="dittoSeq"; version="1.12.2"; sha256="13z7adkadcf405hk0x2ypjbm05465m5qzsvs1fb46mkr1fd9c822"; depends=[colorspace cowplot ggplot2 ggrepel ggridges gridExtra pheatmap reshape2 S4Vectors SingleCellExperiment SummarizedExperiment]; }; - divergence = derive2 { name="divergence"; version="1.16.0"; sha256="1h212zjav0m4739mrshnp3ghnq0cr66knv5ihn6fy3grf00i1v9k"; depends=[SummarizedExperiment]; }; - dks = derive2 { name="dks"; version="1.46.0"; sha256="1cbqcg7fk27y8y1hbfwz9vj6sgvygnmg855h9swlr2mq5kaka5ig"; depends=[cubature]; }; - dmrseq = derive2 { name="dmrseq"; version="1.20.1"; sha256="1lxrirgy42xnpdj7b2nrabbki33an8ri6j1mgxp3jn4h0a88c280"; depends=[AnnotationHub annotatr BiocParallel bsseq bumphunter DelayedMatrixStats GenomeInfoDb GenomicRanges ggplot2 IRanges locfit matrixStats nlme outliers RColorBrewer rtracklayer S4Vectors]; }; - doppelgangR = derive2 { name="doppelgangR"; version="1.28.1"; sha256="0sbwqrn4j364wj8j1s857hvxi2hch0cgm84h71sy6hmg7p5jdnvf"; depends=[Biobase BiocParallel digest impute mnormt SummarizedExperiment sva]; }; - doseR = derive2 { name="doseR"; version="1.16.0"; sha256="1as6sinbry3ai8wlzrdpr8zfd4c9cyqlbwg0hc4ii4lvnykbm5hz"; depends=[digest edgeR lme4 matrixStats mclust RUnit S4Vectors SummarizedExperiment]; }; - doubletrouble = derive2 { name="doubletrouble"; version="1.0.0"; sha256="0w82sgf7c86v3ir771a332x0ab09z517jvp43xx2chsbwahzyk1d"; depends=[Biostrings GenomicRanges ggplot2 mclust MSA2dist syntenet]; }; - dpeak = derive2 { name="dpeak"; version="1.12.0"; sha256="1fx2rrcqmjckk5kk3mfa56b1393b2c8sf566q95d8zmlsvkl03w5"; depends=[BSgenome IRanges MASS Rcpp]; }; - drawProteins = derive2 { name="drawProteins"; version="1.20.0"; sha256="15vxi4a8bm65s6ba7kyyr64l4k7frwa6l06537423ac245j7nkwl"; depends=[dplyr ggplot2 httr readr tidyr]; }; - drugTargetInteractions = derive2 { name="drugTargetInteractions"; version="1.8.0"; sha256="0ll9fdfnvr8rbm54z1jf5w6b3dizm8fhzladnlc6xx5ysldasci3"; depends=[AnnotationFilter BiocFileCache biomaRt dplyr ensembldb rappdirs RSQLite S4Vectors UniProt_ws]; }; - dupRadar = derive2 { name="dupRadar"; version="1.30.3"; sha256="05j8ffdsg38rxpqxmrb154qdba1jlnhsfjkxgzs6fpkvcggp06g5"; depends=[KernSmooth Rsubread]; }; - dyebias = derive2 { name="dyebias"; version="1.60.0"; sha256="1l4sk2hzghr0b983ki2jzr9myyy62pcz104vblql48jg6pxv28gk"; depends=[Biobase marray]; }; - easier = derive2 { name="easier"; version="1.6.3"; sha256="1b8grnh0srla1pxln88bxg0n4z2ri6qjp4qi6f4d14mwdsylkfiy"; depends=[BiocParallel coin decoupleR DESeq2 dorothea dplyr easierData ggplot2 ggpubr ggrepel magrittr matrixStats progeny quantiseqr reshape2 rlang ROCR rstatix tibble tidyr]; }; - easyRNASeq = derive2 { name="easyRNASeq"; version="2.36.0"; sha256="1cax4k6rppk0kxwannf0ar17jx1pa7lp52a398skqkhy87s29dbp"; depends=[Biobase BiocFileCache BiocGenerics BiocParallel biomaRt Biostrings edgeR GenomeInfoDb genomeIntervals GenomicAlignments GenomicRanges IRanges locfit LSD rappdirs Rsamtools S4Vectors ShortRead SummarizedExperiment]; }; - easyreporting = derive2 { name="easyreporting"; version="1.12.0"; sha256="0xpxqmal1b6pr0i9kppvjwfkaz36w04bmf6x2cgaip0v2g256mrh"; depends=[rlang rmarkdown shiny]; }; - ecolitk = derive2 { name="ecolitk"; version="1.72.0"; sha256="08ykgqc8f8v927q8r2bnj16fw2sm36p2lcirsiy4425hxmz8yfjz"; depends=[Biobase]; }; - edge = derive2 { name="edge"; version="2.32.0"; sha256="1l8icn5xzyhx5pis33198wbaq7bbkbfxnsmzvymx6fha4p5qs6yb"; depends=[Biobase MASS qvalue snm sva]; }; - edgeR = derive2 { name="edgeR"; version="3.42.4"; sha256="1lyn017jqgn6d987zrk0kp2p2nw3mxf8zjspk31pky532p9pkhs3"; depends=[limma locfit Rcpp]; }; - eds = derive2 { name="eds"; version="1.2.0"; sha256="0yhrh076m3ljhafdzan5ym60m8hyb29hwzfi0zzrxjbbjiz673q0"; depends=[Matrix Rcpp]; }; - eegc = derive2 { name="eegc"; version="1.26.0"; sha256="0m67zjsq2xzk292rp0hdlj8lbfgci2dsdb5hmn4b591fqawwsqbb"; depends=[AnnotationDbi clusterProfiler DESeq2 DOSE edgeR ggplot2 gplots igraph limma org_Hs_eg_db org_Mm_eg_db pheatmap R_utils S4Vectors sna wordcloud]; }; - eiR = derive2 { name="eiR"; version="1.40.0"; sha256="0f10da7wiyrqzmdah2pmv0gxy5i6yvsfbyc3r71s4zgqj5nvf2wp"; depends=[BiocGenerics ChemmineR DBI digest RcppAnnoy RCurl RUnit snow snowfall]; }; - eisaR = derive2 { name="eisaR"; version="1.12.0"; sha256="0g2zg8y0mdn0nn1jw5dlvm2245913fmw7lbgymkwlihf5xm8s345"; depends=[BiocGenerics edgeR GenomicRanges IRanges limma S4Vectors SummarizedExperiment]; }; - enhancerHomologSearch = derive2 { name="enhancerHomologSearch"; version="1.6.1"; sha256="081b6d8m4kq4bsrxs8pwg58lwrifd2cc2ymkqcv491xnfabr3ais"; depends=[BiocFileCache BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges httr IRanges jsonlite Matrix motifmatchr Rcpp rtracklayer S4Vectors]; }; - enrichTF = derive2 { name="enrichTF"; version="1.16.0"; sha256="15k7vy02270ygl354wxy7dsx4w2qx6bidqyhsb1dcamhy2z11403"; depends=[BiocGenerics BSgenome clusterProfiler GenomeInfoDb GenomicRanges ggplot2 ggpubr heatmap3 IRanges JASPAR2018 magrittr motifmatchr pipeFrame R_utils rmarkdown rtracklayer S4Vectors TFBSTools]; }; - enrichplot = derive2 { name="enrichplot"; version="1.20.3"; sha256="11hgxs42wvirv6b9ywr2jb51s67k4r0pm21dkvm7xjbsbarlkhmh"; depends=[aplot DOSE ggfun ggnewscale ggplot2 ggraph ggtree GOSemSim igraph magrittr plyr purrr RColorBrewer reshape2 rlang scatterpie shadowtext yulab_utils]; }; - ensemblVEP = derive2 { name="ensemblVEP"; version="1.42.0"; sha256="0s743p10cf1vjw8b44qy6cwx77ykkq931sil1cv9km278zpkp3b5"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges S4Vectors SummarizedExperiment VariantAnnotation]; }; - ensembldb = derive2 { name="ensembldb"; version="2.24.1"; sha256="1x73lln0rlnypl8iia54srl3wrazs94f8rspmjsaqsxwknkym319"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges ProtGenerics Rsamtools RSQLite rtracklayer S4Vectors]; }; - epiNEM = derive2 { name="epiNEM"; version="1.24.0"; sha256="1c13mrw9if1v3gx8c662p48prx5hy8ndgs35ma4dv93kkgqxg9i2"; depends=[BoolNet e1071 graph gtools igraph latex2exp lattice latticeExtra minet mnem pcalg RColorBrewer]; }; - epialleleR = derive2 { name="epialleleR"; version="1.8.1"; sha256="1jjydv6f10zdrk5fx54a7iy9fl5rk6j3wk3i0i7zzd4nsk7m8rpz"; depends=[BH BiocGenerics data_table GenomeInfoDb GenomicRanges Rcpp Rhtslib stringi SummarizedExperiment VariantAnnotation zlibbioc]; }; - epidecodeR = derive2 { name="epidecodeR"; version="1.8.0"; sha256="19422k6v9xc1gq3hw2mbqcgp3jdllmkjrcqsac0b02i4ly4yad8h"; depends=[dplyr EnvStats GenomicRanges ggplot2 ggpubr IRanges rstatix rtracklayer]; }; - epigenomix = derive2 { name="epigenomix"; version="1.40.0"; sha256="1mgxc3bsgh93ij8qpa4mr4pcc3p0avzhwyk68hzc5k48c7f9n782"; depends=[beadarray Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges MCMCpack Rsamtools S4Vectors SummarizedExperiment]; }; - epigraHMM = derive2 { name="epigraHMM"; version="1.8.3"; sha256="1kcr6rkh3bn2j93i249mk0jsykf9cbl8h50ly60jsg1h62xqqswg"; depends=[bamsignals csaw data_table GenomeInfoDb GenomicRanges ggplot2 ggpubr GreyListChIP IRanges limma magrittr MASS Matrix pheatmap Rcpp RcppArmadillo rhdf5 Rhdf5lib Rsamtools rtracklayer S4Vectors scales SummarizedExperiment]; }; - epimutacions = derive2 { name="epimutacions"; version="1.4.0"; sha256="079mkdri07zhx41gd78x88kq0isj6lahijbxr6whc8p5g8qk6p3f"; depends=[AnnotationDbi AnnotationHub BiocGenerics BiocParallel biomaRt bumphunter ensembldb epimutacionsData ExperimentHub GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel gridExtra Gviz Homo_sapiens IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest IRanges isotree matrixStats minfi purrr reshape2 robustbase rtracklayer S4Vectors SummarizedExperiment tibble TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - epistack = derive2 { name="epistack"; version="1.6.0"; sha256="1rnc7vnm6n6f88zncag4x3m2z8nn28r8mjh9cdgr2i2p177cipav"; depends=[BiocGenerics GenomicRanges IRanges plotrix S4Vectors SummarizedExperiment]; }; - epistasisGA = derive2 { name="epistasisGA"; version="1.2.1"; sha256="1rs3m4jc9lmwzxg20mknbdrlpnrm0z54ldi5xywmpzyf382r8lka"; depends=[batchtools BH bigmemory BiocParallel data_table ggplot2 igraph matrixStats qgraph Rcpp RcppArmadillo survival]; }; - epivizr = derive2 { name="epivizr"; version="2.30.0"; sha256="1y6nmh1q0ajjbar3ixwkpky545pccwmqqkpfcph1dsvbkb1dxm4l"; depends=[bumphunter epivizrData epivizrServer GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - epivizrChart = derive2 { name="epivizrChart"; version="1.22.0"; sha256="08rgz3izbr74s3kbx2vwxi3v2kbaq8h7vray9amzd9hbixys97x0"; depends=[BiocGenerics epivizrData epivizrServer htmltools rjson]; }; - epivizrData = derive2 { name="epivizrData"; version="1.28.0"; sha256="0fyxwxzzj59dm6268q4hlkpd5pfx9c6vg1iz0zr7ydngknxjxrfi"; depends=[Biobase ensembldb epivizrServer GenomeInfoDb GenomicFeatures GenomicRanges IRanges OrganismDbi S4Vectors SummarizedExperiment]; }; - epivizrServer = derive2 { name="epivizrServer"; version="1.28.0"; sha256="1xk3k39wwjzvff9i156y9zr4jfnwdap0k24hf14ih48yl472v4g9"; depends=[httpuv mime R6 rjson]; }; - epivizrStandalone = derive2 { name="epivizrStandalone"; version="1.28.0"; sha256="013fw3qm1zl4xfvlqk07a2v853xb82d1n4c6vigk5n8b4gjb3603"; depends=[BiocGenerics epivizr epivizrServer GenomeInfoDb GenomicFeatures git2r S4Vectors]; }; - erccdashboard = derive2 { name="erccdashboard"; version="1.34.0"; sha256="0mfmrfrnwc7vr7c3p3b2qxb084lbhgkp3jq2d22bhm2gaj45b1m7"; depends=[edgeR ggplot2 gplots gridExtra gtools limma locfit MASS plyr qvalue reshape2 ROCR scales stringr]; }; - erma = derive2 { name="erma"; version="1.16.0"; sha256="14rgj8g9x248p2cc86aqn289qamsd91d6fnydi5d34q605ph73yj"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel GenomeInfoDb GenomicFiles GenomicRanges ggplot2 Homo_sapiens IRanges rtracklayer S4Vectors shiny SummarizedExperiment]; }; - esATAC = derive2 { name="esATAC"; version="1.22.0"; sha256="1hyg4cz3zqxp6mh55kazpmxq64q83fhpisqzqamr0vfsb7c4jjym"; depends=[AnnotationDbi BiocGenerics BiocManager Biostrings BSgenome ChIPseeker clusterProfiler corrplot digest GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 igraph IRanges JASPAR2018 knitr magrittr motifmatchr pipeFrame R_utils Rbowtie2 Rcpp rJava rmarkdown Rsamtools rtracklayer S4Vectors ShortRead TFBSTools VennDiagram]; }; - escape = derive2 { name="escape"; version="1.10.0"; sha256="1krsaj2lx37za83kv7383zl4cpz0i3sjxx67ysljmvmf47kk5b5g"; depends=[BiocParallel broom data_table dplyr ggplot2 ggridges GSEABase GSVA Matrix MatrixGenerics msigdbr patchwork reshape2 rlang SingleCellExperiment stringr SummarizedExperiment UCell]; }; - escheR = derive2 { name="escheR"; version="1.0.0"; sha256="0nplryxpqrz3fygywdkby6681gjgqbc506l78vfxyjk5x58d3dkx"; depends=[ggplot2 rlang SpatialExperiment spatialLIBD SummarizedExperiment]; }; - esetVis = derive2 { name="esetVis"; version="1.26.1"; sha256="1ffbjh9x0h8az6nfin679hn86j7hgphv8lk2sa59plfz0d6bwpa5"; depends=[Biobase hexbin MASS MLP mpm Rtsne]; }; - eudysbiome = derive2 { name="eudysbiome"; version="1.30.0"; sha256="1svq1x3w2kkhhh78mzrx1xwz3acpcbm1dkk6k22gnd9kai5qsqqd"; depends=[Biostrings plyr R_utils Rsamtools]; }; - evaluomeR = derive2 { name="evaluomeR"; version="1.16.0"; sha256="0fqwqibm8h1n6zbb4g1cjpnmhsw8x7q8gznpgmkx1kr2pbbqaibf"; depends=[class cluster corrplot flexmix fpc ggdendro ggplot2 kableExtra MASS matrixStats mclust MultiAssayExperiment plotrix prabclus randomForest Rdpack reshape2 SummarizedExperiment]; }; - exomeCopy = derive2 { name="exomeCopy"; version="1.46.0"; sha256="1flsskpdbs1fm5pw63p837w4fvzzhv5prcxhs2j7mqqbwi8grb9y"; depends=[GenomeInfoDb GenomicRanges IRanges Rsamtools]; }; - exomePeak2 = derive2 { name="exomePeak2"; version="1.12.0"; sha256="00sihyf2xv0sq4k4hsi08rvyyp8m0bv49bfnrfpi6vaml0nyhl3m"; depends=[BiocGenerics BiocParallel Biostrings BSgenome DESeq2 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges magrittr mclust Rsamtools rtracklayer S4Vectors speedglm SummarizedExperiment]; }; - extraChIPs = derive2 { name="extraChIPs"; version="1.4.6"; sha256="0bgznpx1sjz2bgs3rb50zi4jbxjckh8fzii20sabwpb20xsr2xjv"; depends=[BiocIO BiocParallel broom ComplexUpset csaw dplyr edgeR EnrichedHeatmap forcats GenomeInfoDb GenomicInteractions GenomicRanges ggforce ggplot2 ggrepel ggside glue Gviz InteractionSet IRanges limma matrixStats patchwork RColorBrewer rlang Rsamtools rtracklayer S4Vectors scales stringr SummarizedExperiment tibble tidyr tidyselect vctrs VennDiagram]; }; - fCCAC = derive2 { name="fCCAC"; version="1.26.0"; sha256="1z3494r3anzfdayfx7w925ic97anha20lb3wnv1nlsq88a8mv1wd"; depends=[ComplexHeatmap fda genomation GenomicRanges ggplot2 IRanges RColorBrewer S4Vectors]; }; - fCI = derive2 { name="fCI"; version="1.30.0"; sha256="061rm7rcimwsj4mfqa3976vhnd69isgl6k6091yyysjwbwqrlk1r"; depends=[FNN gtools psych rgl VennDiagram zoo]; }; - fabia = derive2 { name="fabia"; version="2.46.0"; sha256="1bcvyd3k82gjilcw2bvn0n7f2dfmvnvxr2576izbd7dqsnflawb8"; depends=[Biobase]; }; - factDesign = derive2 { name="factDesign"; version="1.76.0"; sha256="1l8227wdf9nczmqqwbxi7r7r250bndh55jn8gqaygdw1z5hf0f6s"; depends=[Biobase]; }; - factR = derive2 { name="factR"; version="1.2.0"; sha256="1xh6y164qv08lppvggdnbsk2mwq0fddmlbq7g7zrzbhdlw3ip5yh"; depends=[BiocGenerics BiocParallel Biostrings crayon data_table dplyr drawProteins GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges pbapply purrr RCurl rlang rtracklayer S4Vectors stringr tibble tidyr wiggleplotr XML]; }; - famat = derive2 { name="famat"; version="1.10.0"; sha256="10p67y99pbq93h22cz5w51japkb61m65bavmw7i6mg1m6rnsrfq2"; depends=[BiasedUrn clusterProfiler dplyr DT GO_db gprofiler2 KEGGREST magrittr mgcv ontologyIndex org_Hs_eg_db plotly reactome_db rWikiPathways shiny shinyBS shinydashboard stringr tidyr]; }; - farms = derive2 { name="farms"; version="1.52.0"; sha256="1w1bw8bglcmjsz83vc8s5wl1c58x2bvd365k984pxaw3xl9fj92j"; depends=[affy Biobase MASS]; }; - fastLiquidAssociation = derive2 { name="fastLiquidAssociation"; version="1.36.0"; sha256="1fxvgmx7s6g6s3zbavklmpm8xsqvnhaz5dc1wrp33r03pwwh5d5b"; depends=[doParallel Hmisc impute LiquidAssociation preprocessCore WGCNA]; }; - fastreeR = derive2 { name="fastreeR"; version="1.4.0"; sha256="06c9041ng93x18q0cjcnb8cvkbhs3axzpbmxn4w9izal87nd3cnf"; depends=[ape data_table dynamicTreeCut R_utils rJava stringr]; }; - fastseg = derive2 { name="fastseg"; version="1.46.0"; sha256="0gygyf1xq1z6vzand43n965p366zh0k3rv58gnyqa81whj4dvcq3"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors]; }; - fcScan = derive2 { name="fcScan"; version="1.14.0"; sha256="071sylwwj27bk39pkn5a29r7bmfpmyaixkkg7dqcdq230c1dsrps"; depends=[doParallel foreach GenomicRanges IRanges plyr rtracklayer SummarizedExperiment VariantAnnotation]; }; - fcoex = derive2 { name="fcoex"; version="1.13.0"; sha256="085r5s5sqrj2701zk5kv3818ksxvxzd76lknzi6bk1svw4d3lsyc"; depends=[clusterProfiler data_table dplyr FCBF ggplot2 ggrepel igraph intergraph Matrix network pathwayPCA progress scales SingleCellExperiment sna stringr]; }; - fdrame = derive2 { name="fdrame"; version="1.72.0"; sha256="12dvzi621k578q73vf79qb6078i43j3mrpbg0n0v4zz1hima1kyr"; depends=[]; }; - fedup = derive2 { name="fedup"; version="1.8.0"; sha256="1cnylpj4jhp1qayjaxll2nal49k1lw6ifa7fgbl7cv4749p817gr"; depends=[data_table dplyr forcats ggplot2 ggthemes openxlsx RColorBrewer RCy3 tibble]; }; - ffpe = derive2 { name="ffpe"; version="1.44.0"; sha256="0wyc84bbvqmw0g10zrj0j0qcvp7w4vf7cd6mjm3qqnvp6g1f8wx4"; depends=[affy Biobase BiocGenerics lumi methylumi sfsmisc TTR]; }; - fgga = derive2 { name="fgga"; version="1.8.0"; sha256="0l63sc5zbj0612dgsdmr7jl6p6blwqf733xln6g5k8c95rwg7p9n"; depends=[BiocFileCache curl e1071 graph gRbase jsonlite RBGL]; }; - fgsea = derive2 { name="fgsea"; version="1.26.0"; sha256="0chnrwiwk31crrx4am1yrbxjdqd3jycgjgczqzj7lxaa9v7lvm7z"; depends=[BH BiocParallel cowplot data_table fastmatch ggplot2 Matrix Rcpp scales]; }; - fishpond = derive2 { name="fishpond"; version="2.6.2"; sha256="0zsw4j6gk25303xpdwnkda2sq3mb4zb4p1mzwiyf7hdyf87zis05"; depends=[abind GenomicRanges gtools IRanges jsonlite Matrix matrixStats qvalue S4Vectors SingleCellExperiment SummarizedExperiment svMisc]; }; - flagme = derive2 { name="flagme"; version="1.56.0"; sha256="06zhrbb8hkvakxx9c6rl5z3fxm9w9ccr7k90d1snv3m5ijsczlgf"; depends=[CAMERA gcspikelite gplots MASS SparseM xcms]; }; - flowAI = derive2 { name="flowAI"; version="1.30.0"; sha256="0ydy98qsiqpw0b6fvmlv09kza94qjcl40ma9pknzgbq21ac4z25g"; depends=[changepoint flowCore ggplot2 knitr plyr RColorBrewer reshape2 rmarkdown scales]; }; - flowBeads = derive2 { name="flowBeads"; version="1.38.0"; sha256="1gpkbc7wq71mpkw1qfdnmya3f0j9nb56g68zxk851p06dzafx100"; depends=[Biobase flowCore knitr rrcov xtable]; }; - flowBin = derive2 { name="flowBin"; version="1.36.0"; sha256="100mnspids50gdqzcail93nqlsfmxv9f7a2qslyp9v5sh9c3gia6"; depends=[BiocGenerics class flowCore flowFP limma snow]; }; - flowCHIC = derive2 { name="flowCHIC"; version="1.34.0"; sha256="1ay7wsbwwvqnb0wac1bby1b8d6swrzw8ix6vjcsll8k6xqf8x0pk"; depends=[EBImage flowCore ggplot2 hexbin vegan]; }; - flowClean = derive2 { name="flowClean"; version="1.38.0"; sha256="1djyk2ql3ww1kf5nbg14sbp14xs136cxl57yfcivjaaq6r0d2rs0"; depends=[bit changepoint flowCore sfsmisc]; }; - flowClust = derive2 { name="flowClust"; version="3.38.0"; sha256="1gmkmx6gzx4w39ijcad3lx2xnr2b833mhs8gcmc6k21k57aznzs2"; depends=[Biobase BiocGenerics flowCore graph]; }; - flowCore = derive2 { name="flowCore"; version="2.12.2"; sha256="1z3xsp1ymvdjhwcj5mkhl1d586rlr5i8vji9y5gs595w3naa4r0h"; depends=[BH Biobase BiocGenerics cpp11 cytolib matrixStats Rcpp RProtoBufLib S4Vectors]; }; - flowCut = derive2 { name="flowCut"; version="1.10.0"; sha256="0gfnc45yg6m6i4gkag65bkc3569441rrbyhi0xbxabrkb8m9a3f0"; depends=[Cairo e1071 flowCore flowDensity]; }; - flowCyBar = derive2 { name="flowCyBar"; version="1.36.0"; sha256="0rl1xmil6197pkmwkmvcvscsw7b0bp4ljrj3zjrihpjjq5x7fivw"; depends=[gplots vegan]; }; - flowDensity = derive2 { name="flowDensity"; version="1.34.0"; sha256="1g71sng0f53z6i8vsfirb0qpxadd4vcrmhcfndh88avphrp2i1i5"; depends=[car flowCore flowViz flowWorkspace gplots RFOC sp]; }; - flowFP = derive2 { name="flowFP"; version="1.58.0"; sha256="1c7j84ax36ybxs7qpkcnxggv4ajzh4dip76caaq7qw8fyyd9cdy4"; depends=[Biobase BiocGenerics flowCore flowViz]; }; - flowGate = derive2 { name="flowGate"; version="1.0.0"; sha256="0wkmpzrbv8bkh9b7glgh5zzncij4511wx5a59g4i5q2w9c3vw8bc"; depends=[BiocManager dplyr flowCore flowWorkspace ggcyto ggplot2 purrr rlang shiny tibble]; }; - flowGraph = derive2 { name="flowGraph"; version="1.8.0"; sha256="1kx01vzh5qrpsdqqmrkdjfkcvb1bilbvbx632dd4qdcsxizmj3bb"; depends=[data_table effsize furrr future ggiraph ggplot2 ggrepel gridExtra htmlwidgets igraph Matrix matrixStats purrr Rdpack stringi stringr visNetwork]; }; - flowMap = derive2 { name="flowMap"; version="1.38.0"; sha256="1mjv55cg5q6gx32sn6h5aqzrpjb5awb6489j8dya56fbivjs7zxj"; depends=[abind ade4 doParallel Matrix reshape2 scales]; }; - flowMatch = derive2 { name="flowMatch"; version="1.36.0"; sha256="0zbx53avgxcwsq2bfkadj4hqnm85djcj1wymyawhn4dvd11lsdjj"; depends=[Biobase flowCore Rcpp]; }; - flowMeans = derive2 { name="flowMeans"; version="1.60.0"; sha256="18lp1pickpd68fl7a4nidyvyh4yf53gbgn2f2yxaxfp2mk3mj88w"; depends=[Biobase feature flowCore rrcov]; }; - flowMerge = derive2 { name="flowMerge"; version="2.48.0"; sha256="1wcnch6kih9hhdhnxqlfqnrybzjzvgi9akjnlbw3s01knpprhsy9"; depends=[feature flowClust flowCore foreach graph Rgraphviz rrcov snow]; }; - flowPeaks = derive2 { name="flowPeaks"; version="1.46.0"; sha256="1clmqvmqcpjw2gxbnln7qh26qi9iv5iphqd3ssyjipvbsg43spks"; depends=[]; }; - flowPloidy = derive2 { name="flowPloidy"; version="1.26.0"; sha256="05nwzprwrysykngv9d4gkiqbsxnzl5z68pvbqa6874kzz5wpa9fg"; depends=[car caTools flowCore knitr minpack_lm rmarkdown shiny]; }; - flowPlots = derive2 { name="flowPlots"; version="1.48.0"; sha256="18cd61gwi3clsig2w8gwxc84dlmzkjqjnxbmdcaan9i47y8cvhxa"; depends=[]; }; - flowSpecs = derive2 { name="flowSpecs"; version="1.14.0"; sha256="0vyfl08q7v8hylb5imhq95kg5ancsi9hi4niqf65j29cql4hs8ij"; depends=[Biobase BiocGenerics BiocParallel flowCore ggplot2 reshape2 zoo]; }; - flowStats = derive2 { name="flowStats"; version="4.12.0"; sha256="13mdpdndalm0d6azjancw0xcbdc674ivkj8kp6ccfpdd7gydhr4j"; depends=[Biobase BiocGenerics cluster corpcor fda flowCore flowViz flowWorkspace KernSmooth ks lattice MASS mnormt ncdfFlow RColorBrewer rrcov]; }; - flowTime = derive2 { name="flowTime"; version="1.24.0"; sha256="1lkss5y5fxxswdjl4ry8xawy1as0jsxck7ahn2ajxycsj4kplr7l"; depends=[dplyr flowCore magrittr plyr rlang tibble]; }; - flowTrans = derive2 { name="flowTrans"; version="1.52.0"; sha256="1mmi75n957wlmp8x34p1h4giq89g20ahyvzrvf582w5662id9k34"; depends=[flowClust flowCore flowViz]; }; - flowVS = derive2 { name="flowVS"; version="1.32.0"; sha256="1qm6qs8rs3qc3x9nj3kn7qrnfaqzdw5rj7bzfkhfvvxcsnmgmch8"; depends=[flowCore flowStats flowViz]; }; - flowViz = derive2 { name="flowViz"; version="1.64.0"; sha256="0y16hzadpr5c99cwkphc07vh6lypgfk5nacbmn7mmrw01b3gbk67"; depends=[Biobase flowCore hexbin IDPmisc KernSmooth lattice latticeExtra MASS RColorBrewer]; }; - flowWorkspace = derive2 { name="flowWorkspace"; version="4.12.2"; sha256="1g1hym2anysgy7v46fnnxyzac3wzi1713vlih2gqzi23k8r2xx26"; depends=[BH Biobase BiocGenerics cpp11 cytolib data_table DelayedArray dplyr flowCore ggplot2 graph matrixStats ncdfFlow RBGL Rgraphviz Rhdf5lib RProtoBufLib S4Vectors scales XML]; }; - flowcatchR = derive2 { name="flowcatchR"; version="1.34.0"; sha256="159j5izrgmc8mqn48aq9n4da07mw375yp62g9rdml266wvyvvm9f"; depends=[abind BiocParallel colorRamps EBImage plotly shiny]; }; - fmcsR = derive2 { name="fmcsR"; version="1.42.0"; sha256="0ci77gbz93i3s2j2gjp7y3ssn6bcdcmqnl23smnjai7qjmln64dp"; depends=[BiocGenerics ChemmineR RUnit]; }; - fmrs = derive2 { name="fmrs"; version="1.10.0"; sha256="17bwvymh1vk6xh1631dvkjxkap9b2azyypncjyvg6s5i9y0dabz3"; depends=[survival]; }; - fobitools = derive2 { name="fobitools"; version="1.8.0"; sha256="18zq0f83xs8609lx8m80p5338alnsby02n3jk14p4x7laf5z2dpv"; depends=[clisymbols crayon dplyr fgsea ggplot2 ggraph magrittr ontologyIndex purrr RecordLinkage stringr textclean tictoc tidygraph tidyr vroom]; }; - frenchFISH = derive2 { name="frenchFISH"; version="1.12.0"; sha256="1v4k1vhmsvq0gkz8af4kr7w9zhm6d9ifjc65bmr4n6bkw6byqyq1"; depends=[MCMCpack NHPoisson]; }; - frma = derive2 { name="frma"; version="1.52.0"; sha256="1wwlivl8wdb4wqggab3v0i91qrp42z0nljnsgrsayr1q3ym27zp4"; depends=[affy Biobase BiocGenerics DBI MASS oligo oligoClasses preprocessCore]; }; - frmaTools = derive2 { name="frmaTools"; version="1.52.0"; sha256="05wpgn7d5vv3f13hjmkb34phbqjq0vwdmb64v8aaxz85am2k2d2w"; depends=[affy Biobase DBI preprocessCore]; }; - funtooNorm = derive2 { name="funtooNorm"; version="1.24.0"; sha256="15djkh6fck0962zzqf6ag8y1nbjyhdsr6afqfr9266ky73dlmijb"; depends=[GenomeInfoDb IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest matrixStats minfi pls]; }; - gCrisprTools = derive2 { name="gCrisprTools"; version="2.6.0"; sha256="02ahb82mm3mdkim63vh5iz38sds26nr8l5ppbvpbg4g8i9524j2x"; depends=[Biobase ComplexHeatmap ggplot2 limma rmarkdown RobustRankAggreg SummarizedExperiment]; }; - gaga = derive2 { name="gaga"; version="2.46.0"; sha256="1jrax6w1z7zv1nf3486c1rmwnspj56x4mxy690jn8gp0jkiashk5"; depends=[Biobase coda EBarrays mgcv]; }; - gage = derive2 { name="gage"; version="2.50.0"; sha256="16wx2w70i12420022xz2zx8pizzyxb7z1pcmqn515cs89f1qcnli"; depends=[AnnotationDbi GO_db graph KEGGREST]; }; - gaggle = derive2 { name="gaggle"; version="1.68.0"; sha256="17li1wiwf4mqiq2zwgphqslw1pliyhq8lgg90lj82ymxrm2m30nq"; depends=[graph rJava RUnit]; }; - garfield = derive2 { name="garfield"; version="1.28.0"; sha256="1a39988gf8a3m9j176h464n3a26j1mx7yhlbg2glqrzq9rfrc206"; depends=[]; }; - gcapc = derive2 { name="gcapc"; version="1.24.0"; sha256="14vqdqk1nnrj2w17krdy450lj72vjsf3d5vpgz9pjz58kz9ygh26"; depends=[BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS matrixStats Rsamtools S4Vectors]; }; - gcatest = derive2 { name="gcatest"; version="2.0.7"; sha256="1n0xd91lq11gnm78vf5a7jnbfx4fagl31l4iwk5wxbng98nvlqpi"; depends=[lfa]; }; - gcrma = derive2 { name="gcrma"; version="2.72.0"; sha256="0k4fsmqkv82d3a6v3gwphvbri5sgbd3f1s4qyv960rhyk2xj2b4p"; depends=[affy affyio Biobase BiocManager Biostrings XVector]; }; - gdsfmt = derive2 { name="gdsfmt"; version="1.36.1"; sha256="11qib2znznzvyb0x9qm1nfg9lhyqy63yrdjicy7n3n6l8dfd2lx7"; depends=[]; }; - geNetClassifier = derive2 { name="geNetClassifier"; version="1.40.0"; sha256="1bn7h8jwmmgqzp0s3xdbsicm8pxmrgvnxmjnjs10d1rvp8znzjnn"; depends=[Biobase e1071 EBarrays minet]; }; - gemini = derive2 { name="gemini"; version="1.14.0"; sha256="0cxf5ank6m87nz5wgjigg64yl91z70qsmz452v4vl8qs08yi5g07"; depends=[dplyr ggplot2 magrittr mixtools pbmcapply scales]; }; - gemma_R = derive2 { name="gemma.R"; version="1.2.0"; sha256="116if5ngprsvj5nzipcgj4nn0pqx3901rfzd7fzh90cy4q8xg2xv"; depends=[assertthat Biobase bit64 data_table glue httr jsonlite lubridate magrittr memoise rappdirs rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; }; - genArise = derive2 { name="genArise"; version="1.76.0"; sha256="1haqnngyjgncddpa4hfd99m5w5zff2hriwq484y14k0ws1k2vd0b"; depends=[locfit tkrplot xtable]; }; - genbankr = derive2 { name="genbankr"; version="1.27.0"; sha256="0fv87cf2y10ijlb0g1x9g9wh95qyljqb1c7k1ihbnjcg36xkh8lc"; depends=[Biobase BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges rtracklayer S4Vectors VariantAnnotation]; }; - geneAttribution = derive2 { name="geneAttribution"; version="1.26.0"; sha256="1ywbjvs9aqsksiy7834ir7a8vpb5n5qdjkjsf7qpr1n47iin7kax"; depends=[BiocGenerics GenomeInfoDb GenomicFeatures GenomicRanges IRanges org_Hs_eg_db rtracklayer]; }; - geneClassifiers = derive2 { name="geneClassifiers"; version="1.24.0"; sha256="18v9c4pcd0mjwv4xyyy5nbppn6vfd9fxsf8cnz55k6v7c4psvb15"; depends=[Biobase BiocGenerics]; }; - geneRecommender = derive2 { name="geneRecommender"; version="1.72.0"; sha256="12qnjgxkq9882q5r70m51rn0k6lxakd19yh60ri7l4prxlzz50br"; depends=[Biobase]; }; - geneRxCluster = derive2 { name="geneRxCluster"; version="1.36.0"; sha256="0mqhcxxhsnmiw01b77i6g6gsndq87qp948va6r5s56ygfj0gyqs1"; depends=[GenomicRanges IRanges]; }; - geneXtendeR = derive2 { name="geneXtendeR"; version="1.26.0"; sha256="0dba80hvvwm3yvr1jg2c168wxq53clr63wjf5cdfaig8i40z378m"; depends=[AnnotationDbi BiocStyle data_table dplyr GO_db networkD3 org_Rn_eg_db RColorBrewer rtracklayer SnowballC tm wordcloud]; }; - genefilter = derive2 { name="genefilter"; version="1.82.1"; sha256="1wpg8banz6s6smycfqf9hqryp4kf2gs069s7npyvpq53wy0kxyny"; depends=[annotate AnnotationDbi Biobase MatrixGenerics survival]; }; - genefu = derive2 { name="genefu"; version="2.32.0"; sha256="0jiirmi6wb6zr5spmn8nrqcrk3ks8hhs1nrm6aiwrky26rn1szrv"; depends=[AIMS amap biomaRt iC10 impute limma mclust survcomp]; }; - geneplast = derive2 { name="geneplast"; version="1.26.1"; sha256="1q61244dwf68h05q9ml5d9fs2zcxrl5fgi504f3pz83a426w1dk4"; depends=[ape data_table igraph snow]; }; - geneplotter = derive2 { name="geneplotter"; version="1.78.0"; sha256="03x90l7rvxk0z03p5immqbyyhiygi3mkik636al1cjdcxl9dr5f8"; depends=[annotate AnnotationDbi Biobase BiocGenerics lattice RColorBrewer]; }; - genoCN = derive2 { name="genoCN"; version="1.52.0"; sha256="0dlb3bxbmj9pgvb2zs4q3iy1vpnafwd3qnxy951qm2ln08ksidhy"; depends=[]; }; - genomation = derive2 { name="genomation"; version="1.32.0"; sha256="0y6a2qxxp5mnkllcq46j00069z22ixnrbkd15s007a35lhkibz21"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridBase impute IRanges matrixStats plotrix plyr Rcpp readr reshape2 Rsamtools rtracklayer S4Vectors seqPattern]; }; - genomeIntervals = derive2 { name="genomeIntervals"; version="1.56.0"; sha256="1xd5frbq6fyba8dbqw02c1y6h7bcmfagsr2qs92kq4a3b4k1rn13"; depends=[BiocGenerics GenomeInfoDb GenomicRanges intervals IRanges S4Vectors]; }; - genomes = derive2 { name="genomes"; version="3.30.0"; sha256="0nlkm7mx5cmxpqmkj4528dxdxv0fzbbwj866xybwfzk58pz3ahs2"; depends=[curl readr]; }; - genomicInstability = derive2 { name="genomicInstability"; version="1.6.0"; sha256="0yhn5yw2n3q265cqr7gclxar8mg3s01n4imchnkaxa8q22qyjfdc"; depends=[checkmate mixtools SummarizedExperiment]; }; - gep2pep = derive2 { name="gep2pep"; version="1.20.0"; sha256="07fw9xbic11zrxrzs1x93fjc5p6hiy88d4hq1lqf708cgg2lrwgj"; depends=[Biobase digest foreach GSEABase iterators repo rhdf5 XML]; }; - gespeR = derive2 { name="gespeR"; version="1.31.0"; sha256="1d0qid1lg4m57fmxni34g60h2b1nwlq69kibjsr1w47zxnnlg8ds"; depends=[Biobase biomaRt cellHTS2 doParallel dplyr foreach ggplot2 glmnet Matrix reshape2]; }; - getDEE2 = derive2 { name="getDEE2"; version="1.10.0"; sha256="015mdpir1apx9s4f80yb7sw3c2zsspjk7bfanhvpm95yq8hq4j1n"; depends=[htm2txt SummarizedExperiment]; }; - geva = derive2 { name="geva"; version="1.8.0"; sha256="1xwlniz7ivrlbnlj0jwh950v371yp2yvwjb0ssc6c9cwiyzx6cpx"; depends=[dbscan fastcluster matrixStats]; }; - ggbio = derive2 { name="ggbio"; version="1.48.0"; sha256="0n7nghrrs7fp0b7jk2pfbkzl0lbv55xxk2xqnq2i77ps22ms0h9y"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings biovizBase BSgenome ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra gtable Hmisc IRanges OrganismDbi reshape2 rlang Rsamtools rtracklayer S4Vectors scales SummarizedExperiment VariantAnnotation]; }; - ggcyto = derive2 { name="ggcyto"; version="1.28.1"; sha256="1hgw8g0b62k2lyswp3m81qczzwsyid7zdrnyjvl9388k29w2105s"; depends=[data_table flowCore flowWorkspace ggplot2 gridExtra hexbin ncdfFlow plyr RColorBrewer rlang scales]; }; - ggmanh = derive2 { name="ggmanh"; version="1.4.0"; sha256="1hxajvnjhr2x6vrn55jcc8vfyd1myy3yp0aypxmnwvpjxqc597jb"; depends=[gdsfmt ggplot2 ggrepel RColorBrewer rlang scales SeqArray]; }; - ggmsa = derive2 { name="ggmsa"; version="1.6.0"; sha256="077wx2l4mg95zkx5728ajnr9qm70r6rp2d426w2inwsfl99prqdx"; depends=[aplot Biostrings dplyr ggalt ggforce ggplot2 ggtree magrittr R4RNA RColorBrewer seqmagick statebins tidyr]; }; - ggspavis = derive2 { name="ggspavis"; version="1.6.0"; sha256="0df7xgp952a6v4qpby4yqxa473i7w732imv9lc1svnin9184ip8m"; depends=[ggplot2 ggside SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; - ggtree = derive2 { name="ggtree"; version="3.8.2"; sha256="0l8llnvmg8k5qgag6vfgx1gdv0x46p3ypfz5apv23qhlbx4jfjja"; depends=[ape aplot cli dplyr ggfun ggplot2 magrittr purrr rlang scales tidyr tidytree treeio yulab_utils]; }; - ggtreeDendro = derive2 { name="ggtreeDendro"; version="1.2.1"; sha256="0v54lp1b2d2nga7rspg74x3fmbywcmsx63cjid0n23l0zbyb3vgb"; depends=[ggplot2 ggtree tidytree]; }; - ggtreeExtra = derive2 { name="ggtreeExtra"; version="1.10.0"; sha256="19xikly6ksh03kgpz35wj2d2gdbpikhrk71ahj9ghhkmlwdyjbcr"; depends=[cli ggnewscale ggplot2 ggtree magrittr rlang tidytree]; }; - girafe = derive2 { name="girafe"; version="1.52.0"; sha256="0cddz4jm063fgjnxzzsdnllaydfc2zxpyp8by2cacy2qzx95s8qy"; depends=[Biobase BiocGenerics Biostrings genomeIntervals intervals IRanges Rsamtools S4Vectors ShortRead]; }; - glmGamPoi = derive2 { name="glmGamPoi"; version="1.12.2"; sha256="0d6q8vn8z90k8ffskcn9jmgg5x5pfb3wjv67bqskasy38inn1zg7"; depends=[beachmat BiocGenerics DelayedArray DelayedMatrixStats HDF5Array MatrixGenerics matrixStats Rcpp RcppArmadillo rlang SingleCellExperiment SummarizedExperiment vctrs]; }; - glmSparseNet = derive2 { name="glmSparseNet"; version="1.18.0"; sha256="1vhiw37nj770qh21yd8z9xqxn2zrr4raw75avjn139yfcr4qqmi8"; depends=[biomaRt digest dplyr forcats futile_logger futile_options ggplot2 glmnet glue httr Matrix MultiAssayExperiment readr reshape2 stringr SummarizedExperiment survminer]; }; - globalSeq = derive2 { name="globalSeq"; version="1.28.0"; sha256="0nbqv3l8r973259v1jaqa1brlllci1q5dmhbbxrw5lxihpsdwfps"; depends=[]; }; - globaltest = derive2 { name="globaltest"; version="5.54.0"; sha256="0jjhhg4vi44xqlvmcd80m30m93qyd4c79i7m9jn5hz3mw211xaig"; depends=[annotate AnnotationDbi Biobase survival]; }; - gmapR = derive2 { name="gmapR"; version="1.42.0"; sha256="1l7n7sa4jkf2pgq9ap8qfxijzqklafi1k99wmvf8zaqlq5pa2fr6"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; - gmoviz = derive2 { name="gmoviz"; version="1.12.0"; sha256="0g7hv634m1hmmggp24d40fvja9gqfj72c69kxkxqdpjgjv7wfp2w"; depends=[BiocGenerics Biostrings circlize colorspace ComplexHeatmap GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridBase IRanges pracma Rsamtools rtracklayer S4Vectors]; }; - goProfiles = derive2 { name="goProfiles"; version="1.62.0"; sha256="0kx4cbnp6xwrbaaaa81lj5gkqh5a1pv67c2bmi444b0grjiyij24"; depends=[AnnotationDbi Biobase CompQuadForm GO_db stringr]; }; - goSTAG = derive2 { name="goSTAG"; version="1.24.0"; sha256="0663cjc10008yvvnxwqv3zhjzy4lw92ah0sdr4kdb2cnaykq79qm"; depends=[AnnotationDbi biomaRt GO_db memoise]; }; - goSorensen = derive2 { name="goSorensen"; version="1.2.0"; sha256="0dzzqq3ivp4z01l54wz421cannbm6c6fm0mf49mwqw8jkfa3d28i"; depends=[clusterProfiler GO_db goProfiles org_Hs_eg_db]; }; - goTools = derive2 { name="goTools"; version="1.74.0"; sha256="1wy9x13w066wimdq980rmk4461ddnb10zii2g4jghhipg8vfibqh"; depends=[AnnotationDbi GO_db]; }; - goseq = derive2 { name="goseq"; version="1.52.0"; sha256="1r13n64s9fbx951yaa4mpna71vynbkjz78irk96yzh2x2zzxpjvx"; depends=[AnnotationDbi BiasedUrn BiocGenerics geneLenDataBase GO_db mgcv]; }; - gpls = derive2 { name="gpls"; version="1.72.0"; sha256="1vs58lz8wg143j9dnzqli5yrjsm8mb1qm0p7dy4iyxy5a2lm1npp"; depends=[]; }; - gpuMagic = derive2 { name="gpuMagic"; version="1.16.0"; sha256="13ip50m6if2255ml6gpvqxndrpfbjdfxxcc3f5dzqn09d6g2da5z"; depends=[BiocGenerics Deriv DescTools digest pryr Rcpp stringr]; }; - granulator = derive2 { name="granulator"; version="1.8.0"; sha256="0fsnzdhgpjsayrsf5kmp1rnc81cnwl44bqq48hkx1y06s60ba7fs"; depends=[cowplot dplyr dtangle e1071 epiR ggplot2 ggplotify limSolve magrittr MASS nnls pheatmap purrr rlang tibble tidyr]; }; - graper = derive2 { name="graper"; version="1.16.1"; sha256="16nlkfhhlkqw0w72g908ppbk35q0vsa9n63zdz59vqf3fymhq1ir"; depends=[BH cowplot ggplot2 Matrix matrixStats Rcpp RcppArmadillo]; }; - graph = derive2 { name="graph"; version="1.78.0"; sha256="184izzxc8bpagcac8wqinjp8kmf9zpvjibl0g32nnr64kp9f4rsn"; depends=[BiocGenerics]; }; - graphite = derive2 { name="graphite"; version="1.46.0"; sha256="1fhjkgl6567qchi5sfdqnznalm1l7c7pabz8jc9d7ib9x4g922q5"; depends=[AnnotationDbi graph httr purrr rappdirs rlang]; }; - groHMM = derive2 { name="groHMM"; version="1.34.0"; sha256="1zg30cb4s97zdv6c0f53ix6a97aan5w3lx698sa4cqvi4hbz8f35"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS rtracklayer S4Vectors]; }; - gscreend = derive2 { name="gscreend"; version="1.14.0"; sha256="17fx02qvsixvbvnb47xc47lwjh388cv2haar5kp7kjkwgfl6kjl4"; depends=[BiocParallel fGarch nloptr SummarizedExperiment]; }; - gsean = derive2 { name="gsean"; version="1.20.2"; sha256="0cdivyv94vxn239vpfmx9xp2r54x3frj72d4ljwllqm1xbwk0pg3"; depends=[fgsea PPInfer]; }; - gtrellis = derive2 { name="gtrellis"; version="1.32.0"; sha256="1kk7ysscq8xdbn35b20s8sn8gl93sy0c718fmvr1yrhiqaxq5alr"; depends=[circlize GenomicRanges GetoptLong IRanges]; }; - gwascat = derive2 { name="gwascat"; version="2.32.0"; sha256="1i64bk0ac2v0w5yjxdhnbjh05l6n9fi7gxap0zp73wxj7kl75wkd"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges readr S4Vectors snpStats VariantAnnotation]; }; - gwasurvivr = derive2 { name="gwasurvivr"; version="1.18.0"; sha256="0aznpc9ni87kvm7lq2dnf8lzrd4h2mja8h9sya8ggfz8nlsk6wll"; depends=[GWASTools matrixStats SNPRelate SummarizedExperiment survival VariantAnnotation]; }; - h5vc = derive2 { name="h5vc"; version="2.34.0"; sha256="1srzylm56nj7k0jlmj8g3qm9f99hbsa6palhw7rvs3kvj4479shs"; depends=[abind BatchJobs BiocParallel Biostrings GenomeInfoDb GenomicRanges ggplot2 gridExtra h5vcData IRanges reshape rhdf5 Rhtslib Rsamtools S4Vectors]; }; - hapFabia = derive2 { name="hapFabia"; version="1.42.0"; sha256="0df19hnx21v09sah0gz6p48c5a8fb6701bqvsnipyik553dwkc2i"; depends=[Biobase fabia]; }; - hca = derive2 { name="hca"; version="1.8.1"; sha256="1ry15dx2iwwhlhf6b6hh9v9rf3gwrw60x19aal834z40cx88yngm"; depends=[BiocFileCache digest dplyr DT httr jsonlite miniUI readr shiny tibble tidyr]; }; - heatmaps = derive2 { name="heatmaps"; version="1.24.0"; sha256="04mis4ayjfp31rd9sjiix6sy74c7cd50c1pyhb9n9r7629447miv"; depends=[BiocGenerics Biostrings EBImage GenomeInfoDb GenomicRanges IRanges KernSmooth Matrix plotrix RColorBrewer]; }; - hermes = derive2 { name="hermes"; version="1.4.0"; sha256="1kdrfhg8xpplcijivrvw4dmvkvghii6y1y11z7dfkmlcqg8jyqk2"; depends=[assertthat Biobase BiocGenerics biomaRt checkmate circlize ComplexHeatmap DESeq2 dplyr edgeR EnvStats forcats GenomicRanges ggfortify ggplot2 ggrepel IRanges lifecycle limma magrittr matrixStats MultiAssayExperiment purrr R6 Rdpack rlang S4Vectors SummarizedExperiment tidyr]; }; - hiAnnotator = derive2 { name="hiAnnotator"; version="1.34.0"; sha256="0nk1ch5fv9ilp5h95dhljcss0mkyifawf375qhn2gynyivy2lma1"; depends=[BSgenome dplyr foreach GenomicRanges ggplot2 iterators rtracklayer scales]; }; - hiReadsProcessor = derive2 { name="hiReadsProcessor"; version="1.36.0"; sha256="138i5dfizhcc9az4sd3na1zh8gkyd5abzzhv6h4dg8mb24n4cd8s"; depends=[BiocGenerics BiocParallel Biostrings dplyr GenomicAlignments GenomicRanges hiAnnotator readxl sonicLength]; }; - hierGWAS = derive2 { name="hierGWAS"; version="1.30.0"; sha256="19fgcfspm3ac5wr0siw3ppl6jwicj7grga79yyh435mzkfy0z920"; depends=[fastcluster fmsb glmnet]; }; - hierinf = derive2 { name="hierinf"; version="1.18.0"; sha256="0m3r27j6r3glwmc0smmwyg9xrnm306sc6g58mir24aa3cxyxi60m"; depends=[fmsb glmnet]; }; - hipathia = derive2 { name="hipathia"; version="3.0.2"; sha256="08qgandd81j0dvhgly0wa62n16lmyrs7gajrpmdsvmgh7mkzipwl"; depends=[AnnotationHub coin DelayedArray dplyr ggplot2 ggpubr igraph limma matrixStats MetBrewer MultiAssayExperiment preprocessCore reshape2 S4Vectors servr SummarizedExperiment tibble visNetwork]; }; - hmdbQuery = derive2 { name="hmdbQuery"; version="1.20.0"; sha256="0d4jldxqxmwp87hgn71zjlk9ikpz688cxc4vfv2biq4m6m0rbr60"; depends=[S4Vectors XML]; }; - hopach = derive2 { name="hopach"; version="2.60.0"; sha256="1r3ca5x1w5aj8vakp1yzqjqqqfhi4mcx1hy1szvihwygamh5ghns"; depends=[Biobase BiocGenerics cluster]; }; - hpar = derive2 { name="hpar"; version="1.42.0"; sha256="1sg0mjada72a13xh3k6xsiaff7xj4mp76r6i8iab8nfkvng07p4i"; depends=[ExperimentHub]; }; - hummingbird = derive2 { name="hummingbird"; version="1.10.0"; sha256="07yqzy1shz8s99kq3jkpwycqhpmalcq4ghzpysjh8j24khfkmc9s"; depends=[GenomicRanges IRanges Rcpp SummarizedExperiment]; }; - hyperdraw = derive2 { name="hyperdraw"; version="1.52.0"; sha256="0vhfvmv6b3kab6a8hy2y9zwxgzwb5vliaaxhlrgz8i4pvvq5nhqb"; depends=[graph hypergraph Rgraphviz]; }; - hypergraph = derive2 { name="hypergraph"; version="1.72.0"; sha256="13f3m8m6i99hzm94hriry645jcn0a1ki8z8wmn3mkasdi6bzx20h"; depends=[graph]; }; - iASeq = derive2 { name="iASeq"; version="1.44.0"; sha256="0xjs26v21bl671pnz7zifjkj6z8gwafmixsskih5asg7k57pzmi8"; depends=[]; }; - iBBiG = derive2 { name="iBBiG"; version="1.44.0"; sha256="1yjg6xnfq6na6gmr8j4xzhxfs3fh5syh33mq46sfi7m5x4iwql21"; depends=[ade4 biclust xtable]; }; - iBMQ = derive2 { name="iBMQ"; version="1.40.0"; sha256="1id4zck9pndrmg8digrljy2n3h34gy3d1m523jy43wdwnshz6w6p"; depends=[Biobase ggplot2]; }; - iCARE = derive2 { name="iCARE"; version="1.28.0"; sha256="1zbwhpfbcrjbyglm46a5i4h2ddd5pk663pmcnyzpxjvx8ymnlnxr"; depends=[gtools Hmisc plotrix]; }; - iCNV = derive2 { name="iCNV"; version="1.20.0"; sha256="073ygwy4db8f4wdss8rcdafgp4grz27h4n2kwvw9rridykjygdyw"; depends=[CODEX data_table dplyr fields ggplot2 rlang tidyr truncnorm]; }; - iCOBRA = derive2 { name="iCOBRA"; version="1.28.1"; sha256="120bcakhhl6xqsfclzgmn7rcxmld289bjl6j7nrli7aiq5ilz8h4"; depends=[dplyr DT ggplot2 limma markdown reshape2 ROCR scales shiny shinyBS shinydashboard UpSetR]; }; - iCheck = derive2 { name="iCheck"; version="1.30.0"; sha256="08f16lcdkdx37yb2i7304y5nc74i7b6sqikj8x36g93l1z5f23k7"; depends=[affy Biobase GeneSelectMMD gplots limma lmtest lumi MASS preprocessCore randomForest rgl scatterplot3d]; }; - iChip = derive2 { name="iChip"; version="1.54.0"; sha256="0cd8s6r775g9x58zri2kywbz9lki0m9gkb5xr4r7dw8isly5926i"; depends=[limma]; }; - iClusterPlus = derive2 { name="iClusterPlus"; version="1.36.1"; sha256="1lbkmin9pkk9yzpmwrfyniyqnwmp0wcgiirq8prmzi5mvndl6wm3"; depends=[]; }; - iGC = derive2 { name="iGC"; version="1.30.0"; sha256="0vrxy7vrd2b6r1v1aqzv246y0hlggs98bxx06z31lwd6jmj29p18"; depends=[data_table plyr]; }; - iPAC = derive2 { name="iPAC"; version="1.44.0"; sha256="1clnni5fpipww6z4vzmgighy5b55fa2zdpblsx26jcra3kkr83nn"; depends=[Biostrings gdata multtest scatterplot3d]; }; - iPath = derive2 { name="iPath"; version="1.6.1"; sha256="1sx26iid7jkgnk99bd5c3w6f3k4cfxjx7vplmz82sd4zn2zh3334"; depends=[BiocParallel ggplot2 ggpubr matrixStats mclust Rcpp RcppArmadillo survival survminer]; }; - iSEE = derive2 { name="iSEE"; version="2.12.0"; sha256="1npwdl45459wfp589mznzw6xvya9zwij3gxz32pxg86l94d7fqba"; depends=[BiocGenerics circlize colourpicker ComplexHeatmap DT ggplot2 ggrepel igraph mgcv rintrojs S4Vectors shiny shinyAce shinydashboard shinyjs shinyWidgets SingleCellExperiment SummarizedExperiment vipor viridisLite]; }; - iSEEhex = derive2 { name="iSEEhex"; version="1.2.0"; sha256="0ycym1y9nlxzp7jd73agk0306sgvxxlfh6bs5g1ychl27jriidw3"; depends=[ggplot2 hexbin iSEE shiny SummarizedExperiment]; }; - iSEEhub = derive2 { name="iSEEhub"; version="1.2.1"; sha256="0hbdnq9f91bqhw19j5dk774iyc2ds5in73xh81vf1njz6a1xdydn"; depends=[AnnotationHub BiocManager DT ExperimentHub iSEE rintrojs S4Vectors shiny shinydashboard shinyjs SingleCellExperiment SummarizedExperiment]; }; - iSEEu = derive2 { name="iSEEu"; version="1.12.0"; sha256="1i9ww97910fyk1z0vj69kgm1xwcgy376zrzxwmpv11cp20qp2wc2"; depends=[colourpicker DT ggplot2 IRanges iSEE iSEEhex S4Vectors shiny shinyAce SingleCellExperiment SummarizedExperiment]; }; - iSeq = derive2 { name="iSeq"; version="1.52.0"; sha256="11axazmy1q5ragybi2bqk52xfar8p8r94jbnglzn8k7pdfxkgv83"; depends=[]; }; - iasva = derive2 { name="iasva"; version="1.18.0"; sha256="058n3j5hr6mj3199b3ws9dha7lwk4xplh7xswhdr4q6l0545z526"; depends=[BiocParallel cluster irlba SummarizedExperiment]; }; - ibh = derive2 { name="ibh"; version="1.48.0"; sha256="0p13qlk49fgadbhc5nw6n702603jpmcx7q1rbf3frynlxy8px2i0"; depends=[simpIntLists]; }; - icetea = derive2 { name="icetea"; version="1.18.1"; sha256="00jjs7qlci41yk2rgrg4qzl4i1npw66ad84kp4kb9ij54fzx4sb9"; depends=[BiocGenerics BiocParallel Biostrings csaw DESeq2 edgeR GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges limma Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm6_ensGene VariantAnnotation]; }; - ideal = derive2 { name="ideal"; version="1.24.1"; sha256="18drv785az6kni15j9j1nqiyi58dvbyk2ik1571y365i0s6c48wp"; depends=[AnnotationDbi base64enc BiocParallel DESeq2 dplyr DT GenomicRanges ggplot2 ggrepel GO_db goseq GOstats gplots heatmaply IHW IRanges knitr limma pcaExplorer pheatmap plotly rentrez rintrojs rlang rmarkdown S4Vectors shiny shinyAce shinyBS shinydashboard stringr SummarizedExperiment topGO UpSetR]; }; - idiogram = derive2 { name="idiogram"; version="1.76.0"; sha256="0fqy4gbbqk43bncawhm7p1dmrg44sg345z7hj2ar7qlbfxh0drqw"; depends=[annotate Biobase plotrix]; }; - idpr = derive2 { name="idpr"; version="1.10.0"; sha256="0p7np7jlwvkdlsram9q5vmarghxdpaskv43krsc1155cr8h676g1"; depends=[Biostrings dplyr ggplot2 jsonlite magrittr plyr rlang]; }; - idr2d = derive2 { name="idr2d"; version="1.14.0"; sha256="0inj3lwcrpx9wyxvbsijsr5l6lzjm5mxf23khsswfl1lc9c0bqhn"; depends=[dplyr futile_logger GenomeInfoDb GenomicRanges ggplot2 idr IRanges magrittr reticulate scales stringr]; }; - igvR = derive2 { name="igvR"; version="1.20.0"; sha256="0kfsl2w3a9bycp7baha1q5a1n7hfzp6scw1hv1kjsmvc6f5mszzh"; depends=[BiocGenerics BrowserViz GenomicAlignments GenomicRanges httpuv httr RColorBrewer rtracklayer VariantAnnotation]; }; - illuminaio = derive2 { name="illuminaio"; version="0.42.0"; sha256="190i3b9qmh26bic1lzi54mw4p1nrg57qijl1pg6b29w3i6srq692"; depends=[base64]; }; - imcRtools = derive2 { name="imcRtools"; version="1.6.5"; sha256="0x2mzz8s1fhjw2kxggjxsaj1m1m0bss7isiqgizfwsslwqsn9k1j"; depends=[abind BiocNeighbors BiocParallel concaveman cytomapper data_table distances dplyr DT EBImage ggplot2 ggraph igraph magrittr MatrixGenerics pheatmap readr RTriangle S4Vectors scuttle sf SingleCellExperiment SpatialExperiment stringr SummarizedExperiment tidygraph tidyselect viridis vroom]; }; - immunoClust = derive2 { name="immunoClust"; version="1.32.0"; sha256="1pd26qli5bj05qivwppz5rpvzm28wp7aqymsg381yg7kzyqlqjdx"; depends=[flowCore lattice]; }; - immunotation = derive2 { name="immunotation"; version="1.8.0"; sha256="1pdzs1pv8pddcycacbhrswf73kbhamxw8fckapgf81zxav2sb2ml"; depends=[curl ggplot2 maps ontologyIndex readr rlang rvest stringr tidyr xml2]; }; - impute = derive2 { name="impute"; version="1.74.1"; sha256="0nz8ggzk2g5w20yyhp6av6hy69kbmg3ncfpq9ppmq6p5a0msx92l"; depends=[]; }; - infercnv = derive2 { name="infercnv"; version="1.16.0"; sha256="19fk4pzhwj9pfh4vg943xb4cdfpq65ax75d61w1mm3f71gg56z5g"; depends=[ape argparse BiocGenerics caTools coda coin digest doParallel dplyr edgeR fastcluster fitdistrplus foreach futile_logger future ggplot2 gplots gridExtra HiddenMarkov igraph Matrix parallelDist phyclust RANN RColorBrewer reshape2 rjags Seurat SingleCellExperiment SummarizedExperiment tidyr]; }; - infinityFlow = derive2 { name="infinityFlow"; version="1.10.0"; sha256="1p3yshp34h5n3a5zd7fh9xpgbpdvbhr19p5lk11d7i5c6blb4dzh"; depends=[Biobase flowCore generics gtools matlab pbapply png raster uwot xgboost]; }; - intansv = derive2 { name="intansv"; version="1.40.0"; sha256="04pzz33f1l22hi5nnj6hh5qlfmi923sqd49i7b0qhlx51kr7hzi3"; depends=[BiocGenerics GenomicRanges ggbio IRanges plyr]; }; - interacCircos = derive2 { name="interacCircos"; version="1.10.0"; sha256="0xda5l65jd0ny8ccjwgflmk3vnzcf56y8193b11p98d0mlprb1ix"; depends=[htmlwidgets plyr RColorBrewer]; }; - interactiveDisplay = derive2 { name="interactiveDisplay"; version="1.38.0"; sha256="1y9fdnpz1bagrwhyj8jikp2q5fd9y74j48l5z7f0s88v88sa7szl"; depends=[AnnotationDbi BiocGenerics Category ggplot2 gridSVG interactiveDisplayBase plyr RColorBrewer reshape2 shiny XML]; }; - interactiveDisplayBase = derive2 { name="interactiveDisplayBase"; version="1.38.0"; sha256="1p3lwk8g14srkhl3x3i0v2d9071251ldy9964mii11k1bp2g08am"; depends=[BiocGenerics DT shiny]; }; - ipdDb = derive2 { name="ipdDb"; version="1.18.0"; sha256="1j7nvq77rpsalglnp3v9z9f59kj6ibvqv8996p6ibg4vyc0bcixg"; depends=[AnnotationDbi AnnotationHub assertthat Biostrings DBI GenomicRanges IRanges RSQLite]; }; - isobar = derive2 { name="isobar"; version="1.46.0"; sha256="0qwspzhnxgfcr5gvmki58drq79k66a0jr1xb19phjd8pb9kr5mqb"; depends=[Biobase biomaRt distr ggplot2 plyr]; }; - isomiRs = derive2 { name="isomiRs"; version="1.28.0"; sha256="1z5brwymmchj1r5fziyljk4r30wa8pnr25kcwlw2gs9mscrxqy5i"; depends=[AnnotationDbi assertive_sets Biobase BiocGenerics broom cluster cowplot DEGreport DESeq2 dplyr GenomicRanges GGally ggplot2 gplots gridExtra gtools IRanges limma RColorBrewer readr reshape rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; }; - iterClust = derive2 { name="iterClust"; version="1.22.0"; sha256="1harxq2kmx12lg70bnbqfb9gvvvxb3ww8c2bnpsr8v40zk86y2ss"; depends=[Biobase cluster]; }; - iterativeBMA = derive2 { name="iterativeBMA"; version="1.58.0"; sha256="1bnscaaz82324wf87n74cm36pzq0598b7pbvd1ijggr08m30ykns"; depends=[Biobase BMA leaps]; }; - iterativeBMAsurv = derive2 { name="iterativeBMAsurv"; version="1.58.0"; sha256="0ypxilmch2h4gi6b3sad77f3mzbyiwxs0nc8z97l42gar6p1xrsv"; depends=[BMA leaps survival]; }; - ivygapSE = derive2 { name="ivygapSE"; version="1.22.1"; sha256="1g8ah2l50k5n0hz66h8ikjlbr69mk8w7xlzgikzdzbnlb14mnj7k"; depends=[ggplot2 hwriter plotly S4Vectors shiny SummarizedExperiment survival survminer UpSetR]; }; - karyoploteR = derive2 { name="karyoploteR"; version="1.26.0"; sha256="1nqcm2jlazm8wsa4p6a59m1j8y1qdwg0w3kii4dqnkann3q2q68x"; depends=[AnnotationDbi bamsignals bezier biovizBase digest GenomeInfoDb GenomicFeatures GenomicRanges IRanges memoise regioneR Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; - katdetectr = derive2 { name="katdetectr"; version="1.2.0"; sha256="061mxwm6rhlnhymif50d076hav7bh31a56ywh6aqp4rpd6l0sc6q"; depends=[Biobase BiocParallel BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 changepoint changepoint_np checkmate dplyr GenomeInfoDb GenomicRanges ggplot2 ggtext IRanges maftools plyranges Rdpack rlang S4Vectors tibble tidyr VariantAnnotation]; }; - kebabs = derive2 { name="kebabs"; version="1.34.0"; sha256="17nxbxgfnrjgdms8q8bi35j4llfgc1kyvzm07f9mgkhzmq6rs3z7"; depends=[apcluster Biostrings e1071 IRanges kernlab LiblineaR Matrix Rcpp S4Vectors XVector]; }; - keggorthology = derive2 { name="keggorthology"; version="2.52.0"; sha256="1gpxh87cnj91myizwkavl9r7ykdg637cs9vkbypfdaamhcsr1l9z"; depends=[AnnotationDbi DBI graph hgu95av2_db]; }; - kissDE = derive2 { name="kissDE"; version="1.20.0"; sha256="1dijdss2qakvgxshcpd5n95zly5q4b7fpkvxh265g8fj4b3hzf62"; depends=[ade4 aods3 Biobase DESeq2 doParallel DSS DT factoextra foreach ggplot2 gplots matrixStats shiny shinycssloaders]; }; - lapmix = derive2 { name="lapmix"; version="1.66.0"; sha256="1kymd9y1fy6wmkmsb3xi16hzacwb8myj012ksqdflpx679g2lya0"; depends=[Biobase]; }; - ldblock = derive2 { name="ldblock"; version="1.30.0"; sha256="18gqmwwi1i4gndqljy809n5zzx38agawxxwhlknpas6k2iskd1xq"; depends=[BiocGenerics httr Matrix rlang]; }; - lefser = derive2 { name="lefser"; version="1.10.1"; sha256="1ifmbbsbyzcyvjni9ww27c9qsqliv7vj2rv9mg9c7gnqgbg6h2c4"; depends=[coin ggplot2 MASS S4Vectors SummarizedExperiment]; }; - les = derive2 { name="les"; version="1.50.0"; sha256="034254qz2kh4v1hnvriacnmsfdy2vhpr2xag939nq2v13xn23sic"; depends=[boot fdrtool gplots RColorBrewer]; }; - levi = derive2 { name="levi"; version="1.18.0"; sha256="1ff8w4bh2f488b2v9cgsdmc98xy33zfj1ffladdm6bhsmfqkgbsv"; depends=[colorspace dplyr DT ggplot2 httr igraph knitr RColorBrewer Rcpp reshape2 rmarkdown shiny shinydashboard shinyjs testthat xml2]; }; - lfa = derive2 { name="lfa"; version="2.0.11"; sha256="0x169fxwlccsqwj1bpviaky3hfr0zdwsdrlgfvrb4j6j95qfgnns"; depends=[corpcor RSpectra]; }; - limma = derive2 { name="limma"; version="3.56.2"; sha256="0miyba9frn1p4pkclzpr0bfazsk0br2jgpwpwwh773d3103hkn0r"; depends=[]; }; - limmaGUI = derive2 { name="limmaGUI"; version="1.76.0"; sha256="14bkf8wsw6b7y5s96lbn1l112c7v8xsy9qnyg0dgxrx9li3mwrpy"; depends=[limma R2HTML tkrplot xtable]; }; - lineagespot = derive2 { name="lineagespot"; version="1.4.0"; sha256="1mmypd4rjdai3iyyp0sx1wk732kripjrimx1dby2xw397z1pszb4"; depends=[data_table httr MatrixGenerics stringr SummarizedExperiment VariantAnnotation]; }; - lionessR = derive2 { name="lionessR"; version="1.14.0"; sha256="0yfznjza95z18r62m35ck4f2sxyc12ip912m6p9zwfqviaczb1si"; depends=[S4Vectors SummarizedExperiment]; }; - lipidr = derive2 { name="lipidr"; version="2.14.1"; sha256="1yqpidlgdps3657hx6kwz6nv9wf6p4sjl45jqrn8pk9jx1xcbn13"; depends=[data_table dplyr fgsea forcats ggplot2 imputeLCMD limma magrittr rlang ropls S4Vectors SummarizedExperiment tidyr]; }; - lisaClust = derive2 { name="lisaClust"; version="1.8.2"; sha256="0mzf5b3qs4p86ypsyrkpd03vkyii35aivkrp4l5j82ds9jzb5hn1"; depends=[BiocGenerics BiocParallel class concaveman data_table dplyr ggplot2 pheatmap purrr S4Vectors SingleCellExperiment SpatialExperiment spatstat_explore spatstat_geom spatstat_random spicyR SummarizedExperiment tidyr]; }; - lmdme = derive2 { name="lmdme"; version="1.42.0"; sha256="1awnbfdfvlziik9nwp5xlpbhc7gp17q2z6sgilmrdmjx9cknbb41"; depends=[limma pls stemHypoxia]; }; - loci2path = derive2 { name="loci2path"; version="1.20.0"; sha256="1z4qxr8zc0miinh05pnks7h7ysqybsixln51fp0gfrb499jlbkfp"; depends=[BiocParallel data_table GenomicRanges pheatmap RColorBrewer S4Vectors wordcloud]; }; - logicFS = derive2 { name="logicFS"; version="2.20.0"; sha256="17sa4wr1zly8bj3fmqknxip6ss7q68f3bni20ckc9yljacdv24jx"; depends=[LogicReg mcbiopi survival]; }; - logitT = derive2 { name="logitT"; version="1.58.0"; sha256="0wd26k2n29i58iz9nr50xjsvc2s5ynbca0y2y4j9xqbvvpfjzk3v"; depends=[affy]; }; - lpNet = derive2 { name="lpNet"; version="2.32.0"; sha256="1msz4ibmxk20f1dn0mgq84323d7jcls97q4ydxh9gpwc41jh16v5"; depends=[lpSolve]; }; - lpsymphony = derive2 { name="lpsymphony"; version="1.28.1"; sha256="08b4d7k5qx19bpg12pw89ckk8x6r2n28qjdxbmy1cxn6dcgzhijd"; depends=[]; }; - lumi = derive2 { name="lumi"; version="2.52.0"; sha256="1lxxqr7x9jdjrsj5j95jb0dbd7p208vifxw3j4s4140zh1ppxnpj"; depends=[affy annotate AnnotationDbi Biobase DBI GenomicFeatures GenomicRanges KernSmooth lattice MASS methylumi mgcv nleqslv preprocessCore RSQLite]; }; - m6Aboost = derive2 { name="m6Aboost"; version="1.6.0"; sha256="1y2mqv0w1yz47gskhsw5hk83f8kr1fy2k1g33dd7zcpx5h2habli"; depends=[adabag Biostrings BSgenome dplyr ExperimentHub GenomicRanges IRanges rtracklayer S4Vectors]; }; - mBPCR = derive2 { name="mBPCR"; version="1.54.0"; sha256="0q7m2j9x5yzh8bnki3cl0ljg0r744iw499ay57jl7ds902gr8738"; depends=[Biobase GWASTools oligoClasses]; }; - mCSEA = derive2 { name="mCSEA"; version="1.20.0"; sha256="1al8b9h7v9lcv9bsmy1idcaf1ry2pkbp2yyvkgbcg945fjrw656n"; depends=[biomaRt fgsea GenomicFeatures GenomicRanges ggplot2 Gviz Homo_sapiens IRanges limma mCSEAdata S4Vectors SummarizedExperiment]; }; - maCorrPlot = derive2 { name="maCorrPlot"; version="1.70.0"; sha256="080pqdhk25kjkvg0i1701nipp1fzsil3hbl4al5c1svvsbh6zs2z"; depends=[lattice]; }; - maPredictDSC = derive2 { name="maPredictDSC"; version="1.38.0"; sha256="0ab6q7cws8svppp1h1a9ghng46v2ysfybcdmw3v7q1bg3yr8kp1j"; depends=[affy AnnotationDbi caret class e1071 gcrma hgu133plus2_db limma LungCancerACvsSCCGEO MASS ROC ROCR]; }; - maSigPro = derive2 { name="maSigPro"; version="1.72.0"; sha256="0w8bq2mdf75ch78s68q50cxm3ppa3gc43s9d76nbqqh1rndgfm7y"; depends=[Biobase MASS mclust venn]; }; - macat = derive2 { name="macat"; version="1.74.0"; sha256="1m1sgnblxxhlx9zcwiryb8hsmisb8q017vx9qn34q1vj1ilw3rj8"; depends=[annotate Biobase]; }; - made4 = derive2 { name="made4"; version="1.74.0"; sha256="1233l5160msxp85vm2h0j3k073vv5d9wj55709x4s657fi9la6ij"; depends=[ade4 Biobase gplots RColorBrewer scatterplot3d SummarizedExperiment]; }; - maftools = derive2 { name="maftools"; version="2.16.0"; sha256="1jvmqn33hxzscr8j7y9zw5sngglcy0zkl0386053lx5dl5s5iqyq"; depends=[data_table DNAcopy RColorBrewer Rhtslib survival zlibbioc]; }; - magpie = derive2 { name="magpie"; version="1.0.0"; sha256="1ny20mbwjxyxgzwjwzx08mw79rczh1siinpfb4rrhx9khkh1j4rd"; depends=[AnnotationDbi aod BiocParallel DESeq2 GenomicFeatures GenomicRanges IRanges Matrix matrixStats openxlsx RColorBrewer reshape2 Rsamtools rtracklayer S4Vectors TRESS]; }; - magrene = derive2 { name="magrene"; version="1.2.0"; sha256="1cjbhvc8jybvrl7mmpmgid2l0ss9a76mnhwlsddmh6b5apchi2xm"; depends=[BiocParallel]; }; - maigesPack = derive2 { name="maigesPack"; version="1.64.0"; sha256="106idgazh2wkv2z63wrbn6f4gaxzkmn95i8583a99f6mqnfbhcqx"; depends=[convert graph limma marray]; }; - makecdfenv = derive2 { name="makecdfenv"; version="1.76.0"; sha256="1a6kngwmc7nvzlgpnhdv4j180847gjh4i3dshld0pcvy3b6bjv8r"; depends=[affy affyio Biobase zlibbioc]; }; - mapscape = derive2 { name="mapscape"; version="1.24.0"; sha256="0m9j8g79lz0342vil5hp8srz2ff0jh3sidrdy5p2il9dxhxmh5x8"; depends=[base64enc htmlwidgets jsonlite stringr]; }; - mariner = derive2 { name="mariner"; version="1.0.0"; sha256="12q4pdq6dkw2xb23bqdzzc93dbna81cyq8akyy5nba0clcy5dd4h"; depends=[abind assertthat BiocGenerics BiocManager BiocParallel colourvalues data_table dbscan DelayedArray GenomeInfoDb GenomicRanges glue HDF5Array InteractionSet IRanges magrittr plotgardener plyranges progress purrr RColorBrewer rhdf5 rlang S4Vectors strawr SummarizedExperiment]; }; - marr = derive2 { name="marr"; version="1.10.0"; sha256="1pdf51mql49sypsndr76v1d10h11gb3b1rbsq7ww6q83phy0n600"; depends=[dplyr ggplot2 magrittr Rcpp rlang S4Vectors SummarizedExperiment]; }; - marray = derive2 { name="marray"; version="1.78.0"; sha256="1z8fx47ng1av8nfpk0i7wpb8k8lsrn66k613p36mbh19m5fx05ks"; depends=[limma]; }; - martini = derive2 { name="martini"; version="1.20.0"; sha256="1vh4ki2cqxz1b95kr4gw7y9in1gik75kkwkp2wj80jsf20y5h74f"; depends=[igraph Matrix memoise Rcpp RcppEigen snpStats]; }; - maser = derive2 { name="maser"; version="1.18.0"; sha256="1ma5d1i56gw8hm2pgvzzvmdd1cm2xb42rgf5lb6sf4v47yzlyb9f"; depends=[BiocGenerics data_table dplyr DT GenomeInfoDb GenomicRanges ggplot2 Gviz IRanges reshape2 rtracklayer]; }; - maskBAD = derive2 { name="maskBAD"; version="1.44.0"; sha256="1rrb1d6pj8mmljv8cj0frmacbrafgnqvfncfavmrcmz09xd6j1zn"; depends=[affy gcrma]; }; - massiR = derive2 { name="massiR"; version="1.36.0"; sha256="14yqwr8h526jkv1dxljpdnk2qxmy4s9q0vvczxazr75srynj0krx"; depends=[Biobase cluster diptest gplots]; }; - mastR = derive2 { name="mastR"; version="1.0.0"; sha256="1pdyydg6sg6x9wgglnpqrns9ga6dgvp09h4b7x0b7sg6n57abxp7"; depends=[AnnotationDbi Biobase dplyr edgeR ggplot2 ggpubr GSEABase limma Matrix msigdb org_Hs_eg_db patchwork SeuratObject SingleCellExperiment SummarizedExperiment tidyr]; }; - matchBox = derive2 { name="matchBox"; version="1.42.0"; sha256="10h60d41d7r1v26k8kgmvpxygviwfgyr6hlxmamb57h18p4nnm73"; depends=[]; }; - matter = derive2 { name="matter"; version="2.2.0"; sha256="0h28g8z0bf4gz85vyij19qp9lk9mng68cskylpmp0qvw0m3z9c05"; depends=[biglm BiocGenerics BiocParallel digest irlba Matrix ProtGenerics]; }; - mbOmic = derive2 { name="mbOmic"; version="1.3.0"; sha256="079qs5apyqli7h16c6drmhibmc356rnllxks5ddfnnq7hdzmhdbw"; depends=[cluster clusterSim data_table doParallel igraph psych visNetwork WGCNA]; }; - mbQTL = derive2 { name="mbQTL"; version="1.0.0"; sha256="0qibg62q6bnng354g7c4nxmz1q8dxsbd3cq7k6ca0hyc8fgnc8lk"; depends=[broom dplyr ggplot2 MatrixEQTL metagenomeSeq pheatmap readxl stringr tidyr]; }; - mbkmeans = derive2 { name="mbkmeans"; version="1.16.0"; sha256="0c48ycgba1m10p1w2qz9r7yxw15nqzlz8fp44d6lbrvj3svmgjwi"; depends=[beachmat benchmarkme BiocParallel ClusterR DelayedArray Matrix Rcpp RcppArmadillo Rhdf5lib S4Vectors SingleCellExperiment SummarizedExperiment]; }; - mdp = derive2 { name="mdp"; version="1.20.0"; sha256="06sald5hf4xxl3sayr45gmhsiziy520m7hxgmk63lblg5a7a5fwm"; depends=[ggplot2 gridExtra]; }; - mdqc = derive2 { name="mdqc"; version="1.62.0"; sha256="0y35z9sw3h77a5g4ah0fxrk5xh7irdw9z0y2jhh6dp0xxcqh6i0k"; depends=[cluster MASS]; }; - megadepth = derive2 { name="megadepth"; version="1.10.0"; sha256="1zzhgfnrr3r5ismbbj9jcqss8mr8ll6p4d3z026ya2khb0i7clc7"; depends=[cmdfun dplyr fs GenomicRanges magrittr readr xfun]; }; - memes = derive2 { name="memes"; version="1.8.0"; sha256="1b3biljsb6y2xsa423gk1xznfhygywmls5nhisqxmv9vx3m0c1nr"; depends=[Biostrings cmdfun dplyr GenomicRanges ggplot2 ggseqlogo magrittr matrixStats patchwork processx purrr readr rlang tibble tidyr universalmotif usethis xml2]; }; - meshes = derive2 { name="meshes"; version="1.26.0"; sha256="1g18vh9wcfl3a2qml6c1j7jrlfkz14ph0w39jvdr9mgc4gd5x8qy"; depends=[AnnotationDbi AnnotationHub DOSE enrichplot GOSemSim MeSHDbi yulab_utils]; }; - meshr = derive2 { name="meshr"; version="2.6.0"; sha256="0sggf817in3zyx8yv5b3xdsmmqkan5n07skjjv40lrrvb742jz47"; depends=[BiocGenerics BiocStyle Category fdrtool knitr markdown MeSHDbi rmarkdown RSQLite S4Vectors]; }; - messina = derive2 { name="messina"; version="1.36.0"; sha256="0m9yjwsgbxnwrj1c73bnwgbazad0yplpgz07nlgxh4g236kcsibh"; depends=[foreach ggplot2 plyr Rcpp survival]; }; - metaCCA = derive2 { name="metaCCA"; version="1.28.0"; sha256="1fnpc43andwk0hjvb355zllay3vzd1fq3d2y56z1gghn048h5l2l"; depends=[]; }; - metaMS = derive2 { name="metaMS"; version="1.36.0"; sha256="1b4qfz99kihprzfrm5xz9sv5r8r4xkcr457vwh0wwxnx65ym6zph"; depends=[BiocGenerics CAMERA Matrix robustbase xcms]; }; - metaSeq = derive2 { name="metaSeq"; version="1.40.0"; sha256="0yd5sz6xvvinchyhgnn3mcd4yjpj411jyfi3084i5qsx9axmxsip"; depends=[NOISeq Rcpp snow]; }; - metabCombiner = derive2 { name="metabCombiner"; version="1.10.0"; sha256="1gyfk0jjpmc57vmwir0lzn7cbk0lpwb8c2yvziwk96cx69l6q55s"; depends=[caret dplyr matrixStats mgcv rlang S4Vectors tidyr]; }; - metabinR = derive2 { name="metabinR"; version="1.2.0"; sha256="0chdzqz8457g5ivrxpqvsx13nkrwbi88691d0f3z5afz12wmd5jk"; depends=[rJava]; }; - metabolomicsWorkbenchR = derive2 { name="metabolomicsWorkbenchR"; version="1.10.0"; sha256="0y1iwmkr118yjqg1inmzs7vbkbz1jpj8mlz80np37c2xjnpf2b91"; depends=[data_table httr jsonlite MultiAssayExperiment struct SummarizedExperiment]; }; - metabomxtr = derive2 { name="metabomxtr"; version="1.34.0"; sha256="1zkaf01d6nsrppmj8398ylhw8vczb96lhczg12ml37hcf2m6axdk"; depends=[Biobase BiocParallel Formula ggplot2 multtest optimx plyr]; }; - metagene = derive2 { name="metagene"; version="2.31.0"; sha256="0kydqb2g1xbkwk5g738f1pyx1hcfmym3z101vawvcjmmgld3kcp8"; depends=[BiocParallel data_table EnsDb_Hsapiens_v86 ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges magrittr matrixStats purrr R6 Rsamtools rtracklayer stringr]; }; - metagene2 = derive2 { name="metagene2"; version="1.16.0"; sha256="18m4drdp8ir0g6jzbsnq4afd9667q47csw3zfj1q1m6faldn66ys"; depends=[BiocParallel data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges magrittr purrr R6 reshape2 Rsamtools rtracklayer]; }; - metagenomeSeq = derive2 { name="metagenomeSeq"; version="1.42.0"; sha256="0293c531l0sjz8qxy7nrajfl081v9df0af9242017msbvyszq6wk"; depends=[Biobase foreach glmnet gplots limma Matrix matrixStats RColorBrewer Wrench]; }; - metahdep = derive2 { name="metahdep"; version="1.58.0"; sha256="06bjfckh6608l777ghzqg3ckvgarldyi9dsckk10kqmvk402k1gz"; depends=[]; }; - metapod = derive2 { name="metapod"; version="1.8.0"; sha256="0lr2sgbgdbqq626nsm3vyhghs8nalg5cxycr4cwsqh9nqrmip3wa"; depends=[Rcpp]; }; - metapone = derive2 { name="metapone"; version="1.6.0"; sha256="00653kakwdvf53hh7lqc9pfddh595l9qd0y6hw6ww9k1qnn1j4gz"; depends=[BiocParallel fdrtool fgsea fields ggplot2 ggrepel markdown]; }; - methInheritSim = derive2 { name="methInheritSim"; version="1.22.0"; sha256="0x5card8vx8zpr0227qla9ph4nvmmghvvd6wf4157zk7v1zz7rp4"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges methylKit msm S4Vectors]; }; - methimpute = derive2 { name="methimpute"; version="1.22.0"; sha256="17h05qg3srdvdb772axfnmc08k11nkqwvjwv10bcmk4aq8i34d1h"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges ggplot2 IRanges minpack_lm Rcpp reshape2]; }; - methrix = derive2 { name="methrix"; version="1.14.0"; sha256="166rxa7amq2hkn65d3jryd955nkr9h3lj54rf85gssw6mfdkkfm1"; depends=[BSgenome data_table DelayedArray DelayedMatrixStats GenomicRanges ggplot2 HDF5Array IRanges matrixStats rtracklayer SummarizedExperiment]; }; - methylCC = derive2 { name="methylCC"; version="1.14.0"; sha256="0gbkahdickin28va3k1dqwnnkd39jm3g9pg511jws8l5k0h90rl7"; depends=[Biobase bsseq bumphunter dplyr FlowSorted_Blood_450k genefilter GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IRanges magrittr minfi plyranges quadprog S4Vectors]; }; - methylGSA = derive2 { name="methylGSA"; version="1.18.0"; sha256="16hhj1g0097nraw721ifxgxzzjy8hkp7zhac670vy0066gqyq5rr"; depends=[AnnotationDbi BiocParallel clusterProfiler ggplot2 GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 missMethyl org_Hs_eg_db reactome_db RobustRankAggreg shiny stringr]; }; - methylInheritance = derive2 { name="methylInheritance"; version="1.24.0"; sha256="0cgnavs12qkqbkfnmf60fvms7g6sz634gis9i190hnz6bgjs0b06"; depends=[BiocParallel GenomicRanges ggplot2 gridExtra IRanges methylKit rebus S4Vectors]; }; - methylKit = derive2 { name="methylKit"; version="1.26.0"; sha256="1qi4gwlxsxr4cgs8s12qybrs89vr79xwd7n9in1af3hyn0swikn1"; depends=[data_table emdbook fastseg GenomeInfoDb GenomicRanges gtools IRanges KernSmooth limma mclust mgcv qvalue R_utils Rcpp Rhtslib Rsamtools rtracklayer S4Vectors zlibbioc]; }; - methylMnM = derive2 { name="methylMnM"; version="1.38.0"; sha256="0d5ymviplwl6mfhndydjhmzhj38sh15pdyzjgp3jp7ybppar5waz"; depends=[edgeR statmod]; }; - methylPipe = derive2 { name="methylPipe"; version="1.34.1"; sha256="1128i8q95dq1xwwx273pl0pzizarvbx2pgvhakw6sjb2ry5prw6d"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicRanges gplots Gviz IRanges marray Rsamtools S4Vectors SummarizedExperiment]; }; - methylSig = derive2 { name="methylSig"; version="1.12.0"; sha256="1k7nm84k870cqzr4dvi5vfz3sphs091l0a677kdk4gzs5nkg5818"; depends=[bsseq DelayedArray DelayedMatrixStats DSS GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - methylclock = derive2 { name="methylclock"; version="1.6.0"; sha256="1l8a24xpf8a5n49zcnidv2jb22rjza80v1ysxa10689w27lhf8h7"; depends=[Biobase devtools dplyr dynamicTreeCut ExperimentHub ggplot2 ggpmisc ggpubr gridExtra impute methylclockData minfi PerformanceAnalytics planet preprocessCore quadprog Rcpp RPMM tibble tidyr tidyverse]; }; - methylscaper = derive2 { name="methylscaper"; version="1.8.6"; sha256="1fs58fqxwlg85iwbn1hzwv93af737cab6wkx1dbm5sd059ks2dzp"; depends=[BiocParallel Biostrings data_table Rfast seqinr seriation shiny shinyFiles shinyjs SummarizedExperiment]; }; - methylumi = derive2 { name="methylumi"; version="2.46.0"; sha256="1aa0pwjyp2p9a4mx4n4qw88ndgrj56p669yzdkd7hxhc3x55nzlf"; depends=[annotate AnnotationDbi Biobase BiocGenerics FDb_InfiniumMethylation_hg19 genefilter GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 illuminaio IRanges lattice matrixStats minfi reshape2 S4Vectors scales SummarizedExperiment]; }; - mfa = derive2 { name="mfa"; version="1.22.0"; sha256="1rc88ilaqhnbachajc0nagmj865g9w8ny1n9n094qiad9j47nfh4"; depends=[Biobase coda dplyr ggmcmc ggplot2 magrittr MCMCglmm MCMCpack Rcpp tibble]; }; - mgsa = derive2 { name="mgsa"; version="1.48.0"; sha256="08szkzkdqzll4ki75lvkkvpz6kcv54863cicw376z73fd3x4bwgd"; depends=[gplots]; }; - miQC = derive2 { name="miQC"; version="1.8.0"; sha256="1vjn700zrdnxva6nk7l9pilm1h5v95xsggsrsxvn5wq8pxfwdhkw"; depends=[flexmix ggplot2 SingleCellExperiment]; }; - miRBaseConverter = derive2 { name="miRBaseConverter"; version="1.24.0"; sha256="04yjfi670lqk4c254isadzaj1mp514i4ns9h7mwdyvagfq6vhsvw"; depends=[]; }; - miRLAB = derive2 { name="miRLAB"; version="1.30.0"; sha256="07fpl377j1bsxqjbwsn35scyj7k4gv456z3i3q8q15rl5rlla35m"; depends=[Category ctc dplyr energy entropy glmnet GOstats gplots Hmisc httr impute InvariantCausalPrediction limma org_Hs_eg_db pcalg RCurl stringr SummarizedExperiment TCGAbiolinks]; }; - miRNAmeConverter = derive2 { name="miRNAmeConverter"; version="1.28.0"; sha256="0g95i1ay88952crlw79w1qc52mp4xz91h0lrab3fs6lr7hjsy5m2"; depends=[AnnotationDbi DBI miRBaseVersions_db reshape2]; }; - miRNApath = derive2 { name="miRNApath"; version="1.60.0"; sha256="0hl12p3pc7738qwrwzj8pmph0g9n88dbw0mrpm6apygkjxk2id3y"; depends=[]; }; - miRNAtap = derive2 { name="miRNAtap"; version="1.34.0"; sha256="0wnc59q9n1jz6wmh3hw8y3k3iaj7k2w68hiy9hjfarjypy4p20nz"; depends=[AnnotationDbi DBI plyr RSQLite sqldf stringr]; }; - miRSM = derive2 { name="miRSM"; version="1.18.0"; sha256="1slb957ns31zxcnbfs5hp7nx7ypfh5as26s4ih5rvl153a5msd1k"; depends=[BiBitR BicARE biclust Biobase dbscan dynamicTreeCut energy fabia flashClust GFA GSEABase iBBiG igraph isa2 linkcomm MatrixCorrelation MCL mclust miRspongeR NMF org_Hs_eg_db PMA ppclust Rcpp rqubic s4vd SOMbrero subspace SummarizedExperiment WGCNA]; }; - miRcomp = derive2 { name="miRcomp"; version="1.30.0"; sha256="147gng7la8z8hwnkqaf6q9ypxk5b24zbipfvn3ns3gfsafsybv7q"; depends=[Biobase KernSmooth miRcompData]; }; - miRmine = derive2 { name="miRmine"; version="1.22.0"; sha256="1d0ni3lavpiv2qzwlmrsjym75cip3i9q1bg9rwa04h61rz2smylg"; depends=[SummarizedExperiment]; }; - miRspongeR = derive2 { name="miRspongeR"; version="2.4.0"; sha256="1mzh0cjm2sbcxw3wgfa6yg98ynl74x41g15vsf54n1m1ys5s7xk0"; depends=[clusterProfiler corpcor doParallel DOSE foreach igraph linkcomm MCL org_Hs_eg_db Rcpp ReactomePA SPONGE survival]; }; - mia = derive2 { name="mia"; version="1.8.0"; sha256="1p78yacx0cgihva7m2n3vnll5w4b47vl98hy12pq9rnmhk6r591z"; depends=[ape BiocGenerics BiocParallel Biostrings DECIPHER decontam DelayedArray DelayedMatrixStats DirichletMultinomial dplyr IRanges MASS MultiAssayExperiment rlang S4Vectors scater scuttle SingleCellExperiment SummarizedExperiment tibble tidyr TreeSummarizedExperiment vegan]; }; - miaSim = derive2 { name="miaSim"; version="1.6.0"; sha256="0bxga2m275fgyjvwscvnd51swjjvs84z6kzy5y4jcvbz5ai4c0mi"; depends=[deSolve MatrixGenerics poweRlaw S4Vectors SummarizedExperiment TreeSummarizedExperiment]; }; - miaViz = derive2 { name="miaViz"; version="1.8.0"; sha256="131wn71754h722x5yfxk53qv2zbcf81sfal6pznb8dr204ixhhzz"; depends=[ape BiocGenerics BiocParallel DelayedArray DirichletMultinomial dplyr ggnewscale ggplot2 ggraph ggtree mia purrr rlang S4Vectors scater SummarizedExperiment tibble tidygraph tidyr tidytree TreeSummarizedExperiment viridis]; }; - microRNA = derive2 { name="microRNA"; version="1.58.0"; sha256="0v243lnnr9d48dc5vgnvq2idh7fdmba5wjccg2wcjvw02vv8c48f"; depends=[Biostrings]; }; - microSTASIS = derive2 { name="microSTASIS"; version="1.0.0"; sha256="1ma7jkd7wjg2z6zchz1jvvjqa31q2lw13vqxhs9vxyfbshjhrcfb"; depends=[BiocParallel ggplot2 ggside rlang stringr TreeSummarizedExperiment]; }; - microbiome = derive2 { name="microbiome"; version="1.22.0"; sha256="120wyjv2r9cbjgxbp70nzf249hai8cqn59gcbgwnazynfy5ih1w8"; depends=[Biostrings compositions dplyr ggplot2 phyloseq reshape2 Rtsne scales tibble tidyr vegan]; }; - microbiomeDASim = derive2 { name="microbiomeDASim"; version="1.14.0"; sha256="1gk8wa3lndchfdl1fdcq8kn3blky0wjr0b845dy8f1s0bv29ar5j"; depends=[Biobase ggplot2 MASS Matrix metagenomeSeq mvtnorm pbapply phyloseq tmvtnorm]; }; - microbiomeExplorer = derive2 { name="microbiomeExplorer"; version="1.10.0"; sha256="1zsxwfyz395475ngr71i14s29ybx4spaah3b7gy4xi0zfgq6mxzq"; depends=[Biobase biomformat broom car DESeq2 dplyr DT forcats heatmaply knitr limma lubridate magrittr matrixStats metagenomeSeq plotly purrr RColorBrewer readr reshape2 rlang rmarkdown shiny shinycssloaders shinydashboard shinyjs shinyWidgets stringr tibble tidyr vegan]; }; - microbiomeMarker = derive2 { name="microbiomeMarker"; version="1.6.0"; sha256="0zgfhvbwwr4w5gzrh924ih4r0fx0s03i1d6dlgyxg5gjnp9lq709"; depends=[ALDEx2 ANCOMBC Biobase BiocGenerics BiocParallel biomformat Biostrings caret coin ComplexHeatmap DESeq2 dplyr edgeR ggplot2 ggsignif ggtree IRanges limma magrittr MASS metagenomeSeq multtest patchwork phyloseq plotROC pROC purrr rlang S4Vectors tibble tidyr tidytree vegan yaml]; }; - midasHLA = derive2 { name="midasHLA"; version="1.8.0"; sha256="02axv74d3mxm739asq5i5bkm7kykrdrhnpzxjliasvmn9h1anixl"; depends=[assertthat broom dplyr formattable HardyWeinberg kableExtra knitr magrittr MultiAssayExperiment qdapTools rlang S4Vectors stringi SummarizedExperiment tibble]; }; - miloR = derive2 { name="miloR"; version="1.8.1"; sha256="073s239aqkixsrarqxfv4nmpcj025k32nhql63qaxrkrvvdd34di"; depends=[BiocGenerics BiocNeighbors BiocParallel BiocSingular cowplot dplyr edgeR ggbeeswarm ggplot2 ggraph ggrepel gtools igraph irlba limma Matrix matrixStats patchwork RColorBrewer S4Vectors SingleCellExperiment stringr SummarizedExperiment tibble tidyr]; }; - mimager = derive2 { name="mimager"; version="1.24.0"; sha256="1sparnf286zhspd3ly02ydxxspb1pn8qszng9lcv6prx70vmig4b"; depends=[affy affyPLM Biobase BiocGenerics DBI gtable oligo oligoClasses preprocessCore S4Vectors scales]; }; - mina = derive2 { name="mina"; version="1.8.0"; sha256="1dwax15n9x2hjip3p8j34kmx2dyxf6zx8s1s1gq4988185jwp5x3"; depends=[apcluster biganalytics bigmemory foreach ggplot2 Hmisc MCL parallelDist plyr Rcpp RcppArmadillo RcppParallel reshape2 RSpectra stringr]; }; - minet = derive2 { name="minet"; version="3.58.0"; sha256="04ll8nqhmyj2v12n2xskia8dh5px8mzj8fbyw1pzahk9vp085gkr"; depends=[infotheo]; }; - minfi = derive2 { name="minfi"; version="1.46.0"; sha256="18b9yg9hnnm1saaiprm2hj86aajjwm1zwvpj0yadfa3s811pw4nq"; depends=[beanplot Biobase BiocGenerics BiocParallel Biostrings bumphunter data_table DelayedArray DelayedMatrixStats genefilter GenomeInfoDb GenomicRanges GEOquery HDF5Array illuminaio IRanges lattice limma MASS mclust nlme nor1mix preprocessCore quadprog RColorBrewer reshape S4Vectors siggenes SummarizedExperiment]; }; - mirIntegrator = derive2 { name="mirIntegrator"; version="1.30.0"; sha256="0rhbvz7nd1zr2il7k493d78cndlx7ndb4llkigpgj91lq259b9c4"; depends=[AnnotationDbi ggplot2 graph org_Hs_eg_db Rgraphviz ROntoTools]; }; - mirTarRnaSeq = derive2 { name="mirTarRnaSeq"; version="1.8.0"; sha256="0b7hmaw8fmhjg3rrkah0j0jwa18yhgzkpbsys16ic07qd9zjdd45"; depends=[assertthat caTools corrplot data_table dplyr ggplot2 MASS pheatmap pscl purrr R_utils reshape2 viridis]; }; - missMethyl = derive2 { name="missMethyl"; version="1.34.0"; sha256="1jvrdr57mv93pcbyazcg1bcx1zd0kp72hi1if839gw54hk3igs3h"; depends=[AnnotationDbi BiasedUrn Biobase BiocGenerics GenomicRanges GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b4_hg19 IlluminaHumanMethylationEPICmanifest IRanges limma methylumi minfi org_Hs_eg_db ruv S4Vectors statmod stringr SummarizedExperiment]; }; - missRows = derive2 { name="missRows"; version="1.20.0"; sha256="05kbz5incgzikivbw0ylbrm7h9sbn6wn9c9hz6ic756kb95pdyy0"; depends=[ggplot2 gtools MultiAssayExperiment plyr S4Vectors]; }; - mistyR = derive2 { name="mistyR"; version="1.8.1"; sha256="0jidi8fi3dpw9rg2422lvr9vimjqxi30n8f5alm0mxs81r3qnngx"; depends=[assertthat caret deldir digest distances dplyr filelock furrr ggplot2 purrr R_utils ranger readr ridge rlang rlist stringr tibble tidyr tidyselect withr]; }; - mitch = derive2 { name="mitch"; version="1.12.0"; sha256="04349x16q67a3arnvk65q3znm9lz54bd1wyv1fjqbmqzbzyizx4j"; depends=[beeswarm echarts4r GGally ggplot2 gplots gridExtra kableExtra knitr MASS plyr reshape2 rmarkdown]; }; - mitoClone2 = derive2 { name="mitoClone2"; version="1.6.0"; sha256="1ck982gqs6skzjsl83fj0621ljnamzhz7mg34r7bvp2bj8q7psfh"; depends=[deepSNV GenomicRanges ggplot2 pheatmap reshape2 Rhtslib S4Vectors]; }; - mixOmics = derive2 { name="mixOmics"; version="6.24.0"; sha256="0dqndpmi56g772sra49vdrkjs4m9h2gzimwv3bwmw2l0krh2ax8s"; depends=[BiocParallel corpcor dplyr ellipse ggplot2 ggrepel gridExtra igraph lattice MASS matrixStats rARPACK RColorBrewer reshape2 tidyr]; }; - mnem = derive2 { name="mnem"; version="1.16.0"; sha256="0lggww83lsa23wb968khh9kkgbza0g77y1c8bsiim170d2cgsnd9"; depends=[cluster data_table e1071 flexclust ggplot2 graph lattice Linnorm matrixStats naturalsort Rcpp RcppEigen Rgraphviz snowfall tsne wesanderson]; }; - moanin = derive2 { name="moanin"; version="1.8.0"; sha256="11hrk46c8h4ffiy3znqiqf8ilfdbmkphq5wss37d8c7zsyj4n9zg"; depends=[ClusterR edgeR limma MASS matrixStats NMI reshape2 S4Vectors SummarizedExperiment topGO viridis zoo]; }; - mogsa = derive2 { name="mogsa"; version="1.34.0"; sha256="09v4gwz8w84lfhsqgk3gywjgls3n7dn4z07d4bj5m0f7zcz3kpii"; depends=[Biobase BiocGenerics cluster corpcor genefilter gplots graphite GSEABase svd]; }; - monaLisa = derive2 { name="monaLisa"; version="1.6.0"; sha256="16fkswcl60x110nsmm0znzrc2zf6x89gk4b3ragz43f1vq9msbdc"; depends=[BiocGenerics BiocParallel Biostrings BSgenome circlize ComplexHeatmap GenomeInfoDb GenomicRanges glmnet IRanges S4Vectors stabs SummarizedExperiment TFBSTools vioplot XVector]; }; - monocle = derive2 { name="monocle"; version="2.28.0"; sha256="05pix638s4hkig2i048m5jjhvw6cqr2b5qvfkk14i64p9kpifmqj"; depends=[Biobase BiocGenerics biocViews cluster combinat DDRTree dplyr fastICA ggplot2 HSMMSingleCell igraph irlba leidenbase limma MASS Matrix matrixStats pheatmap plyr proxy qlcMatrix RANN Rcpp reshape2 Rtsne slam stringr tibble VGAM viridis]; }; - mosaics = derive2 { name="mosaics"; version="2.38.0"; sha256="0q5n0fb2fkgvhr8l7jf49r2967pvxcfil3mjha1lm44n0fvcahx0"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges lattice MASS Rcpp Rsamtools S4Vectors]; }; - mosbi = derive2 { name="mosbi"; version="1.6.0"; sha256="1ppl36xzxhggqvdn9ns1j7ia2r0ksv8y51fg3adnnr9nlzs3plhr"; depends=[akmbiclust BH biclust fabia igraph isa2 QUBIC RColorBrewer Rcpp RcppParallel xml2]; }; - motifStack = derive2 { name="motifStack"; version="1.44.1"; sha256="1g46cxn1h3cqr0yrj6ancshzygiqr9finf1vmmig3h9g0ijgr5lz"; depends=[ade4 Biostrings ggplot2 htmlwidgets TFBSTools XML]; }; - motifbreakR = derive2 { name="motifbreakR"; version="2.14.2"; sha256="13fv0rkyb32grswlgzd3zr35p9xpibj2iq62sr23if4w6z5nbml2"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges Gviz IRanges matrixStats MotifDb motifStack rtracklayer S4Vectors stringr SummarizedExperiment TFMPvalue VariantAnnotation]; }; - motifcounter = derive2 { name="motifcounter"; version="1.24.0"; sha256="1m1ypf0d0r0a0vzmyqsd3w1xdvz71vykr682bxag08md6g7naqz9"; depends=[Biostrings]; }; - motifmatchr = derive2 { name="motifmatchr"; version="1.22.0"; sha256="0vqsxfbrxs25xr27vsr5syqjn6fwvn5dw0g76w4rdqk5d08p56ci"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp RcppArmadillo Rsamtools S4Vectors SummarizedExperiment TFBSTools]; }; - mpra = derive2 { name="mpra"; version="1.22.0"; sha256="0n0fv56sd7n56ccyklpj2gyf2mabxsvjm0i6lbc80n33am068a5q"; depends=[BiocGenerics limma S4Vectors scales statmod SummarizedExperiment]; }; - msImpute = derive2 { name="msImpute"; version="1.10.0"; sha256="1mnzmdjsd9xq3yinzr79ksl8722920p426g39rqqj0lmfzknf235"; depends=[data_table dplyr FNN limma matrixStats mvtnorm pdist reticulate scran softImpute tidyr]; }; - msPurity = derive2 { name="msPurity"; version="1.26.0"; sha256="09svi2502dxljqpfvwgxvsn32qkkh5b059cvggaqdfc8az0a1n0x"; depends=[DBI dbplyr doSNOW dplyr fastcluster foreach ggplot2 magrittr mzR plyr Rcpp reshape2 RSQLite stringr]; }; - msa = derive2 { name="msa"; version="1.32.0"; sha256="08fg4y8rmkvilsx2hxqwxa90p2wqrl4iyndp7wfjicvplmaxp708"; depends=[BiocGenerics Biostrings IRanges Rcpp S4Vectors]; }; - msgbsR = derive2 { name="msgbsR"; version="1.24.0"; sha256="1pnm3z7r0lphba7sj1dll19p0pj7mkz5s1jmnahy6q3y2ic1n91g"; depends=[BSgenome easyRNASeq edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr R_utils Rsamtools S4Vectors SummarizedExperiment]; }; - mslp = derive2 { name="mslp"; version="1.2.0"; sha256="11mkh7mnrbyazra715lblkgvsq2x9v4g75c483cncbhnk1r24058"; depends=[data_table doRNG fmsb foreach magrittr org_Hs_eg_db pROC randomForest RankProd]; }; - msmsEDA = derive2 { name="msmsEDA"; version="1.38.0"; sha256="108azzd6ibcgb1gqgcrz4shk3rdr3vfpzy0z6zknlsxwz7sbcnfi"; depends=[gplots MASS MSnbase RColorBrewer]; }; - msmsTests = derive2 { name="msmsTests"; version="1.38.0"; sha256="1y3nklhlib2l9smcl6slv1653vyg9ip29if286l59rjrdwh50cwa"; depends=[edgeR msmsEDA MSnbase qvalue]; }; - msqrob2 = derive2 { name="msqrob2"; version="1.8.0"; sha256="0sp92ga4c9lp0l4ihhxk03dyx809crzhi29ijscxqmvkq4vi3dv6"; depends=[BiocParallel codetools limma lme4 MASS Matrix MultiAssayExperiment purrr QFeatures SummarizedExperiment]; }; - multiClust = derive2 { name="multiClust"; version="1.30.0"; sha256="0rzn9m4gm96x5jsw0hcnnwkpagkyyd8s88dz9jlhkrygq7drzadx"; depends=[amap cluster ctc dendextend mclust survival]; }; - multiGSEA = derive2 { name="multiGSEA"; version="1.10.0"; sha256="002w9r76m5ch002az1abpbiybkkxyfbqi458hfahmn45735p3zfr"; depends=[AnnotationDbi dplyr fgsea graphite magrittr metaboliteIDmapping metap rappdirs rlang]; }; - multiHiCcompare = derive2 { name="multiHiCcompare"; version="1.18.1"; sha256="1f2m43zq96n8qjrcfxfysphwci92414z12rzai4jqsw4a28rj0bw"; depends=[aggregation BiocParallel data_table dplyr edgeR GenomeInfoDb GenomeInfoDbData GenomicRanges HiCcompare pbapply pheatmap qqman]; }; - multiMiR = derive2 { name="multiMiR"; version="1.22.0"; sha256="0xg6wq022ys23za91di6w655lia4gh1ij2f9hrn9vp937czwlzjv"; depends=[AnnotationDbi BiocGenerics dplyr purrr RCurl tibble XML]; }; - multiOmicsViz = derive2 { name="multiOmicsViz"; version="1.24.0"; sha256="129k094ml403w25k3kipzbavx78p14jxq40a8d733qyqp8mcnlrs"; depends=[doParallel foreach SummarizedExperiment]; }; - multiSight = derive2 { name="multiSight"; version="1.7.0"; sha256="1v2ml1qh250lidm5a0xw4b3xbxd2as86p703qn5s8m1xi6l89b9c"; depends=[anyLib biosigner caret clusterProfiler config DESeq2 dplyr DT easyPubMed enrichplot ggnewscale golem htmltools igraph infotheo metap mixOmics networkD3 ppcor R6 ReactomePA rmarkdown rWikiPathways shiny shinydashboard stringr]; }; - multicrispr = derive2 { name="multicrispr"; version="1.10.1"; sha256="05ansjg6hh5wamj3nb7h941snjiz4g106pjvi45wsphlsqm98hhr"; depends=[assertive BiocGenerics Biostrings BSgenome CRISPRseek data_table GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 karyoploteR magrittr plyranges Rbowtie reticulate rtracklayer stringi tidyr tidyselect]; }; - multiscan = derive2 { name="multiscan"; version="1.60.0"; sha256="0wrh6fg6zr4chiyipc8pqc9f43sxabs17qs1p4mb2d7yk9ga7xxp"; depends=[Biobase]; }; - multtest = derive2 { name="multtest"; version="2.56.0"; sha256="19c6l8pkyp0m2zdzhr81cnmx5lqf501sap9h6ig5iiv66sf2ysmz"; depends=[Biobase BiocGenerics MASS survival]; }; - mumosa = derive2 { name="mumosa"; version="1.8.0"; sha256="0cd8yrlm11zymg9cd9vqazkzrnmyzav0vkr3z7q4cxkz31vrm82j"; depends=[batchelor beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats igraph IRanges Matrix metapod S4Vectors ScaledMatrix scran scuttle SingleCellExperiment SummarizedExperiment uwot]; }; - muscat = derive2 { name="muscat"; version="1.14.0"; sha256="1jcy07m8ywpgsmwkq6s7zj32w7gvxqj52j562irv2h2q429awdxk"; depends=[BiocParallel blme ComplexHeatmap data_table DESeq2 dplyr edgeR ggplot2 glmmTMB limma lme4 lmerTest Matrix matrixStats progress purrr S4Vectors scales scater sctransform scuttle SingleCellExperiment SummarizedExperiment variancePartition viridis]; }; - muscle = derive2 { name="muscle"; version="3.42.0"; sha256="0q49y30zx9g488bvq934r0gfg3d2jikf43jmvx9zzb7xyzj9qh30"; depends=[Biostrings]; }; - musicatk = derive2 { name="musicatk"; version="1.10.0"; sha256="1yfiapiy4j8i9v6j1pyvk698lqa1zr1mzrlvxlk3vnlg2vgf92c5"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 BSgenome_Mmusculus_UCSC_mm9 cluster ComplexHeatmap data_table decompTumor2Sig deconstructSigs dplyr factoextra GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggpubr ggrepel gridExtra gtools IRanges maftools magrittr MASS matrixTests MCMCprecision NMF philentropy plotly rlang S4Vectors shiny stringi stringr SummarizedExperiment tibble tidyr tidyverse topicmodels TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene uwot VariantAnnotation]; }; - mygene = derive2 { name="mygene"; version="1.36.0"; sha256="1qwhl599626z1l0psis7v4d848jbjvajplam136pwwfck2vh1k0b"; depends=[GenomicFeatures Hmisc httr jsonlite plyr S4Vectors sqldf]; }; - myvariant = derive2 { name="myvariant"; version="1.30.0"; sha256="0jdr1krci554a43pjz09nsh8dn1vl7f4y71jifcgj4xv6250wlc3"; depends=[GenomeInfoDb Hmisc httr jsonlite magrittr plyr S4Vectors VariantAnnotation]; }; - mzID = derive2 { name="mzID"; version="1.38.0"; sha256="0grl7798vnpxb6nw98zj0lbvsrhkjfsyn0y15bi4v7vhyhkk26xm"; depends=[doParallel foreach iterators plyr ProtGenerics XML]; }; - mzR = derive2 { name="mzR"; version="2.34.1"; sha256="1jsna4xwyph1gg72wwqlpavb65g5nc3db1vmcs1qcw1mdgasdjhk"; depends=[Biobase BiocGenerics ncdf4 ProtGenerics Rcpp Rhdf5lib]; }; - nanotatoR = derive2 { name="nanotatoR"; version="1.16.0"; sha256="1m3nlpkmpb8vzp0r0rczz2p5qlc34yvjagrbvhw78awfn9b57y6b"; depends=[AnnotationDbi curl dplyr GenomicRanges hash httr knitr openxlsx org_Hs_eg_db rentrez rlang stringr testthat tidyverse VarfromPDB XML XML2R]; }; - ncGTW = derive2 { name="ncGTW"; version="1.14.0"; sha256="16mcmjm6b4kqv3997nwzylp23b9s6h496pi25xqrawmgzpii8kzc"; depends=[BiocParallel Rcpp xcms]; }; - ncRNAtools = derive2 { name="ncRNAtools"; version="1.10.0"; sha256="0dgznpmy794sa1a4nfi8jyfn9hhwhsf9wdjslhfwpcgmfy7dzmfa"; depends=[GenomicRanges ggplot2 httr IRanges S4Vectors xml2]; }; - ncdfFlow = derive2 { name="ncdfFlow"; version="2.46.0"; sha256="0nrj4g02kx763wb70fzvhidmzp82gr1g3fp1aa1bv34cj4lnp47q"; depends=[BH Biobase BiocGenerics cpp11 flowCore Rhdf5lib zlibbioc]; }; - ndexr = derive2 { name="ndexr"; version="1.22.0"; sha256="1gh93wirms6hpp1dg2k9v2jnansyf2wr82dfsrfgv8pha1740c9v"; depends=[httr jsonlite plyr RCX tidyr]; }; - nearBynding = derive2 { name="nearBynding"; version="1.10.0"; sha256="05h2bjc29bispy83r5mrhwpafxyd5vgc4z50ffix4xffiq0yzm71"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicRanges ggplot2 gplots magrittr matrixStats plyranges R_utils rlang Rsamtools rtracklayer S4Vectors transport TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - nempi = derive2 { name="nempi"; version="1.8.0"; sha256="1d7w0gcljhs80sd0xb11v8rh4xakv6l6nrihz3vh07nlcprif63l"; depends=[e1071 epiNEM matrixStats mnem naturalsort nnet randomForest]; }; - netDx = derive2 { name="netDx"; version="1.12.0"; sha256="0ypgf1jvj24y4k33ykzpm51c8dlf0vddqc4g91bhxa7722yknng7"; depends=[bigmemory BiocFileCache combinat doParallel foreach GenomeInfoDb GenomicRanges ggplot2 glmnet httr igraph IRanges MultiAssayExperiment plotrix pracma rappdirs RColorBrewer reshape2 ROCR Rtsne S4Vectors]; }; - netOmics = derive2 { name="netOmics"; version="1.6.0"; sha256="1cxvb4viqw2r88560gv1jra5jvvzp6liickmnwgi313kws0mzgvl"; depends=[AnnotationDbi dplyr ggplot2 GO_db gprofiler2 igraph magrittr minet purrr RandomWalkRestartMH tibble tidyr]; }; - netSmooth = derive2 { name="netSmooth"; version="1.20.0"; sha256="1sg9ksdgadjabay4zpws507fscfvn4hknxm0r1fxr552jgr3cgzr"; depends=[cluster clusterExperiment data_table DelayedArray entropy HDF5Array Matrix scater SingleCellExperiment SummarizedExperiment]; }; - netZooR = derive2 { name="netZooR"; version="1.4.0"; sha256="0cj33d5g5xspvg939mn6vyacwrf8bszjbybzcpwwbdyj7267r9sl"; depends=[AnnotationDbi assertthat Biobase data_table doParallel dplyr foreach ggdendro ggplot2 GO_db GOstats gplots igraph MASS Matrix matrixcalc matrixStats nnet org_Hs_eg_db pandaR penalized RCy3 reshape reshape2 reticulate STRINGdb tidyr vegan viridisLite yarn]; }; - netboost = derive2 { name="netboost"; version="2.8.0"; sha256="0x297frzhqrxh673sbpnj41jyn568pmi1dwy8s1l156cjl7yid76"; depends=[BiocStyle colorspace dynamicTreeCut impute R_utils Rcpp RcppParallel WGCNA]; }; - nethet = derive2 { name="nethet"; version="1.32.0"; sha256="1m7gbb0r9v2clhmsk99f0jr1zv4ks68g3jjsq3wqp0vp8x2zbhrc"; depends=[CompQuadForm GeneNet ggm ggplot2 glasso glmnet GSA huge ICSNP limma mclust multtest mvtnorm network]; }; - netprioR = derive2 { name="netprioR"; version="1.26.0"; sha256="0x1yxp207vky17gblr577mz171fwcqjh9qzd5s07skbz2pxsz07b"; depends=[doParallel dplyr foreach ggplot2 gridExtra Matrix pROC sparseMVN]; }; - netresponse = derive2 { name="netresponse"; version="1.60.0"; sha256="192g4rcyazzxpimkqyxh5y1s1g3i2li4qskh5160yaxp4x31vs9n"; depends=[BiocStyle ggplot2 graph igraph mclust minet plyr qvalue RColorBrewer reshape2 Rgraphviz rmarkdown]; }; - ngsReports = derive2 { name="ngsReports"; version="2.2.4"; sha256="0d5rd4gzwx266kqmg38fjyknfg4pmp6rp99l36f2f4wjmbyih32l"; depends=[BiocGenerics Biostrings checkmate dplyr DT forcats ggdendro ggplot2 jsonlite lifecycle lubridate pander patchwork plotly readr reshape2 rlang rmarkdown scales stringr tibble tidyr tidyselect zoo]; }; - nnNorm = derive2 { name="nnNorm"; version="2.64.0"; sha256="19nywnq17bijxzxcpmmiq8q9jbjskzw2bi0g33zw3g9ksrg3d758"; depends=[marray nnet]; }; - nnSVG = derive2 { name="nnSVG"; version="1.4.2"; sha256="1vrb5mfgda7mpvbi05ya08krixz494x4yxijh61msnrnz2vb4h5s"; depends=[BiocParallel BRISC Matrix matrixStats SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; - nondetects = derive2 { name="nondetects"; version="2.30.0"; sha256="0grz6hky7598kk7mm3amgda5n2bhjmwld0f06zsbcdjpbsr0rchc"; depends=[arm Biobase HTqPCR limma mvtnorm]; }; - normalize450K = derive2 { name="normalize450K"; version="1.28.0"; sha256="0im1q0cnmmk347ql41d8apsshxqp357ksnaf063ybw8lgal0fzv2"; depends=[Biobase illuminaio quadprog]; }; - normr = derive2 { name="normr"; version="1.26.0"; sha256="1l1xj3yz2xbi2rd28zj4gbjjdca0x0z4s4v2gqdg6zn87yz318dm"; depends=[bamsignals GenomeInfoDb GenomicRanges IRanges qvalue Rcpp rtracklayer]; }; - npGSEA = derive2 { name="npGSEA"; version="1.36.0"; sha256="16sr0582ln6qq5yljdp9admfg1i4jziz74cksphqj1a4ic31bwn4"; depends=[Biobase BiocGenerics GSEABase]; }; - nuCpos = derive2 { name="nuCpos"; version="1.18.0"; sha256="0vina93gkwm7q53287qnjykpijcyr31i0vdvpzh5rm3wqd16ah16"; depends=[]; }; - nucleR = derive2 { name="nucleR"; version="2.32.0"; sha256="0fzgapzy1rgsmh8lbldk8d43h1dn916kfgsq791mc7yj21kdycqj"; depends=[Biobase BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr Rsamtools S4Vectors ShortRead]; }; - nucleoSim = derive2 { name="nucleoSim"; version="1.28.0"; sha256="1vp2aj34an5a6r7kw6qni847r7xilrmq2vz17mg5z4ryw30njbcy"; depends=[IRanges S4Vectors]; }; - nullranges = derive2 { name="nullranges"; version="1.6.2"; sha256="11fidrqdk8mrsvmw5lakl6fy5glrz9676853p500i6xm49psh4nj"; depends=[data_table GenomeInfoDb GenomicRanges ggplot2 ggridges InteractionSet IRanges plyranges progress rlang S4Vectors scales]; }; - occugene = derive2 { name="occugene"; version="1.60.0"; sha256="1f1qp0vrvnn6ajzj61pwn5sb3ihn2w9270ixjzcfr4y30za4sl7h"; depends=[]; }; - octad = derive2 { name="octad"; version="1.2.0"; sha256="0la9jgp3r3x8gnz7i06fapw0fvypp07x9rbh5f7p5plzgn5d9lkb"; depends=[AnnotationHub Biobase data_table DESeq2 dplyr EDASeq edgeR ExperimentHub foreach ggplot2 GSVA htmlwidgets httr limma magrittr octad_db plotly reshape2 Rfast rhdf5 RUVSeq S4Vectors]; }; - odseq = derive2 { name="odseq"; version="1.28.0"; sha256="1r8ah7m3sdn64cpjvcv8fzg2z441zqwm597a4qbnaj5rbrf9r19q"; depends=[kebabs mclust msa]; }; - oligo = derive2 { name="oligo"; version="1.64.1"; sha256="0gs26h0hm8xlv3aayz4w0vwmw15x5602g02728spsm3n0qra3b1j"; depends=[affxparser affyio Biobase BiocGenerics Biostrings DBI ff oligoClasses preprocessCore RSQLite zlibbioc]; }; - oligoClasses = derive2 { name="oligoClasses"; version="1.62.0"; sha256="0i745q2kx7rdfbkz3cwzzp1m4diny25mc301vy0sh4z5lpi5mdm8"; depends=[affyio Biobase BiocGenerics BiocManager Biostrings DBI ff foreach GenomicRanges IRanges RSQLite S4Vectors SummarizedExperiment]; }; - omada = derive2 { name="omada"; version="1.1.0"; sha256="0qlz0frs48xapy7nvhfdk662npybgk8zfkj16j3ngz3rgzhn3vcg"; depends=[clValid diceR dplyr fpc ggplot2 glmnet kernlab pdfCluster Rcpp reshape]; }; - omicRexposome = derive2 { name="omicRexposome"; version="1.22.0"; sha256="0hb16ik58q38s4135j3g6qj6y0iwaiq5wrhw6awbif7s0s3c2567"; depends=[Biobase ggplot2 ggrepel gridExtra isva limma MultiDataSet omicade4 PMA rexposome SmartSVA stringr SummarizedExperiment sva]; }; - omicade4 = derive2 { name="omicade4"; version="1.40.0"; sha256="086nh0m82gjlxyg6i230wpkin4zc3a7cfla0qzvj28h0n8irkm5r"; depends=[ade4 Biobase made4]; }; - omicplotR = derive2 { name="omicplotR"; version="1.20.0"; sha256="11glqpdxc54wy03d9v8ggdaxcnxwz9fbxw7k33d0fc984nrqh7jd"; depends=[ALDEx2 compositions DT jsonlite knitr matrixStats rmarkdown shiny vegan zCompositions]; }; - omicsPrint = derive2 { name="omicsPrint"; version="1.20.0"; sha256="1qfc0an6nilmh4hb3jjz8kwz7qyhr1m2bkqzzw83nnwlp2dc84dl"; depends=[MASS matrixStats MultiAssayExperiment RaggedExperiment SummarizedExperiment]; }; - omicsViewer = derive2 { name="omicsViewer"; version="1.4.0"; sha256="10xpm33d0xl03a07a16jk0qvdaynwsrhl8qvikn1fqbvrsgansb2"; depends=[beeswarm Biobase curl DT fastmatch fgsea flatxml ggplot2 ggseqlogo htmlwidgets httr Matrix matrixStats networkD3 openxlsx plotly psych RColorBrewer reshape2 ROCR RSQLite S4Vectors shiny shinybusy shinycssloaders shinyjs shinythemes shinyWidgets stringr SummarizedExperiment survival survminer]; }; - ompBAM = derive2 { name="ompBAM"; version="1.4.0"; sha256="1z9wpsi6492l9hl5csv1kgz815cw6817ns7x3ndpz7ya4sfdrmws"; depends=[Rcpp zlibbioc]; }; - oncomix = derive2 { name="oncomix"; version="1.22.0"; sha256="1fs50j8f6xxlnsxxdnckd6i7j9wcfh90hf7hicpra5v201qnp68c"; depends=[ggplot2 ggrepel mclust RColorBrewer SummarizedExperiment]; }; - oncoscanR = derive2 { name="oncoscanR"; version="1.2.0"; sha256="1q68zh5xcybixmmn1n2s5aqf0ya9ffk5x5qa8a5nrsiv54h7qz1z"; depends=[GenomicRanges IRanges magrittr readr S4Vectors]; }; - onlineFDR = derive2 { name="onlineFDR"; version="2.8.0"; sha256="0dnfzjzcxb9r1f8vknplp404njwwbvfw5q2ykvbvv4k6r2iifp95"; depends=[progress Rcpp RcppProgress]; }; - ontoProc = derive2 { name="ontoProc"; version="1.22.0"; sha256="0kyjcfs42a3h1m5r56pyxgp3h0aia2ykx5dhykqcwhqnl3iwzqyd"; depends=[AnnotationHub Biobase BiocFileCache dplyr DT graph igraph magrittr ontologyIndex ontologyPlot Rgraphviz S4Vectors shiny SummarizedExperiment]; }; - openCyto = derive2 { name="openCyto"; version="2.12.0"; sha256="0z0p09mkap1jqlq1x33i2ik87pbhwq85xgqyfsx4r360nhv06pna"; depends=[BH Biobase BiocGenerics cpp11 data_table flowClust flowCore flowViz flowWorkspace graph ncdfFlow RBGL RColorBrewer]; }; - openPrimeR = derive2 { name="openPrimeR"; version="1.22.0"; sha256="0lcsnc0ahx3nhmqbz46vsm9pyfknlirjmka6ak89vly71d0xjh5n"; depends=[ape BiocGenerics Biostrings DECIPHER digest distr distrEx dplyr fitdistrplus foreach GenomicRanges ggplot2 Hmisc IRanges lpSolveAPI magrittr openxlsx plyr RColorBrewer reshape2 S4Vectors scales seqinr stringdist stringr uniqtag XML]; }; - openPrimeRui = derive2 { name="openPrimeRui"; version="1.22.0"; sha256="1axdlr8cs1khhlpzf7amkzr6rjx5ikqmlcgwkng2m9qfr6v6lfkf"; depends=[DT openPrimeR rmarkdown shiny shinyBS shinyjs]; }; - oposSOM = derive2 { name="oposSOM"; version="2.18.0"; sha256="0wk9zqjgzhy6y240bdrn8j82hpgjpl13b8c3rcvjr2gnvi4l16y6"; depends=[ape Biobase biomaRt fastICA fdrtool graph igraph pixmap png Rcpp RcppParallel RCurl scatterplot3d tsne XML]; }; - oppar = derive2 { name="oppar"; version="1.28.0"; sha256="1g03q6dp52anmwasnd9jssxl22hln89g4rmbgay801f2wgl81sqb"; depends=[Biobase GSEABase GSVA]; }; - oppti = derive2 { name="oppti"; version="1.14.0"; sha256="0yhq61c91j850jqq7n2jfd339lrhawn2716qlis12cq6k3dwhw0b"; depends=[devtools ggplot2 knitr limma parallelDist pheatmap RColorBrewer reshape]; }; - optimalFlow = derive2 { name="optimalFlow"; version="1.12.0"; sha256="0ncyvk8anpcj529cahh10qzx08fp7k4df4ggcj8m5gv1yrmm7i2k"; depends=[dbscan doParallel dplyr ellipse flowMeans foreach optimalFlowData randomForest Rfast rgl rlang robustbase transport]; }; - orthogene = derive2 { name="orthogene"; version="1.6.1"; sha256="01b6p4znh99hz3pp1rsn1k5pwkbm2ypvdxrqyca75a36b87m5syd"; depends=[babelgene data_table DelayedArray dplyr ggplot2 ggpubr ggtree gprofiler2 grr homologene jsonlite Matrix patchwork repmis]; }; - pRoloc = derive2 { name="pRoloc"; version="1.40.1"; sha256="1a0q1714rnlcjjxwhgmrwk544sfi5bxwgjxky5pzai227n4cv00p"; depends=[Biobase BiocGenerics BiocParallel biomaRt caret class coda dendextend e1071 FNN ggplot2 gtools hexbin kernlab knitr LaplacesDemon lattice MASS mclust mixtools MLInterfaces MSnbase mvtnorm nnet plyr proxy randomForest RColorBrewer Rcpp RcppArmadillo sampling scales]; }; - pRolocGUI = derive2 { name="pRolocGUI"; version="2.10.0"; sha256="1kpg5ihz6xb8im4ivmsc01cijxwc5m4v9bkifk9kwfwnryayr6vy"; depends=[Biobase BiocGenerics colorspace colourpicker dplyr DT ggplot2 MSnbase pRoloc scales shiny shinydashboard shinydashboardPlus shinyhelper shinyjs shinyWidgets]; }; - packFinder = derive2 { name="packFinder"; version="1.12.0"; sha256="1s4n0p7zfmg5ddy77skbyyn28mjr1iq077lk9ygkl91r02dixqai"; depends=[ape Biostrings GenomicRanges IRanges kmer S4Vectors]; }; - padma = derive2 { name="padma"; version="1.10.0"; sha256="1ic40ikljwqljc3q55gd9wcnh078gvnz5nn4gdqnk5nfs83dlx7v"; depends=[FactoMineR MultiAssayExperiment S4Vectors SummarizedExperiment]; }; - pageRank = derive2 { name="pageRank"; version="1.10.0"; sha256="0ngf82435m7d869jk76yxvjx1mixg4xclzazfc6g15vzqxl4n1g3"; depends=[GenomicRanges igraph motifmatchr]; }; - paircompviz = derive2 { name="paircompviz"; version="1.38.0"; sha256="106d617b6kc8kkmcxshm8r15nq2lj29mikwylz46vs4hd62pxpza"; depends=[Rgraphviz]; }; - pairedGSEA = derive2 { name="pairedGSEA"; version="1.0.0"; sha256="1vmnhdv4ylha0bsycm6yrfxpiyiqk91r8vlz94al3r52fyih8lg5"; depends=[aggregation BiocParallel DESeq2 DEXSeq fgsea ggplot2 limma S4Vectors SummarizedExperiment sva]; }; - pairkat = derive2 { name="pairkat"; version="1.6.0"; sha256="0i81rxzvl91ilc2i1497h1jlbnpvvd4rmlq0n2ci8kxanibxkmp8"; depends=[CompQuadForm data_table igraph KEGGREST magrittr SummarizedExperiment tibble]; }; - pandaR = derive2 { name="pandaR"; version="1.32.0"; sha256="0x80dkhbb81hpd6vda28h2fsfznd22nccs9q6rckv2qv89f8rmrk"; depends=[Biobase BiocGenerics ggplot2 hexbin igraph matrixStats plyr reshape RUnit]; }; - panelcn_mops = derive2 { name="panelcn.mops"; version="1.22.0"; sha256="1g9n92f5k2b07kgzb7k4z75r5nqy8m1g621qxj68pdwwyvdh4sv3"; depends=[cn_mops GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; - panp = derive2 { name="panp"; version="1.70.0"; sha256="0d2nih62gh7m30innyj7cdf4di70jb17k94m4nqa5mfkp49p9wq9"; depends=[affy Biobase]; }; - pareg = derive2 { name="pareg"; version="1.4.1"; sha256="1nciza7myiica6hcm60yqvlk4kavl57ywgg7b60f9kxgs654j28b"; depends=[basilisk devtools doFuture doRNG DOSE dplyr foreach future ggplot2 ggraph ggrepel glue hms igraph keras logger magrittr Matrix nloptr progress proxy purrr reticulate rlang stringr tensorflow tfprobability tibble tidygraph tidyr]; }; - parglms = derive2 { name="parglms"; version="1.32.0"; sha256="0289pyhqknfdkzypi52014581ndc2pg7flsnbch38wdx1i23nph7"; depends=[BatchJobs BiocGenerics doParallel foreach]; }; - parody = derive2 { name="parody"; version="1.58.0"; sha256="0n2pmpnpwh16hb58v821xn42jm4a7wjsdf6sqxapjjw9w432mjac"; depends=[]; }; - pathRender = derive2 { name="pathRender"; version="1.68.0"; sha256="1a1wlvhgbspwycjdvks6705cj1lh7m79fakgn08b9z9pnk9vxyj9"; depends=[AnnotationDbi cMAP graph RColorBrewer Rgraphviz]; }; - pathVar = derive2 { name="pathVar"; version="1.30.0"; sha256="1q0m4yb4jvi61f3hl7mpbnl9y0y4pqhspi1gn3wp5lf86j8c40jp"; depends=[data_table EMT ggplot2 gridExtra Matching mclust]; }; - pathifier = derive2 { name="pathifier"; version="1.38.0"; sha256="05adkk8m0c04d0ajvqk9g805py4zx3jmlbd3scdzcflv5sxggg7p"; depends=[princurve R_oo]; }; - pathview = derive2 { name="pathview"; version="1.40.0"; sha256="0mld7vys6s5k8snk1gniph9wkw3726vsx430nhyyr76fp4ps2mks"; depends=[AnnotationDbi graph KEGGgraph KEGGREST org_Hs_eg_db png Rgraphviz XML]; }; - pathwayPCA = derive2 { name="pathwayPCA"; version="1.16.1"; sha256="0rmxq59i5aq9kyr6zyl8klbbpn2lzdhj8769xvsa7n3bqvscyc4m"; depends=[lars survival]; }; - paxtoolsr = derive2 { name="paxtoolsr"; version="1.34.0"; sha256="0wdz098hjbbvd9sdfiv5w5wdzr9hjabg516vvg4phl6km2jb9xd9"; depends=[httr igraph jsonlite plyr R_utils rappdirs readr rJava rjson XML]; }; - pcaExplorer = derive2 { name="pcaExplorer"; version="2.26.1"; sha256="04r4qsiasbfb0pwqyqmw2w3qdkhgwixwffp1s8hjflwnb63hxzjx"; depends=[AnnotationDbi base64enc biomaRt DESeq2 DT genefilter GenomicRanges ggplot2 ggrepel GO_db GOstats heatmaply IRanges knitr limma NMF pheatmap plotly plyr rmarkdown S4Vectors scales shiny shinyAce shinyBS shinydashboard SummarizedExperiment threejs tidyr topGO]; }; - pcaMethods = derive2 { name="pcaMethods"; version="1.92.0"; sha256="14awrgq56s948x74j4iv9k1yy5b7axw1kqzg827y5znjc1i3aqy6"; depends=[Biobase BiocGenerics MASS Rcpp]; }; - pcxn = derive2 { name="pcxn"; version="2.22.0"; sha256="0fk2v28bwi3cdmy9k557pxhr4gplgkdl6l79hgwjd6q8rp46lgzh"; depends=[pcxnData pheatmap]; }; - pdInfoBuilder = derive2 { name="pdInfoBuilder"; version="1.64.0"; sha256="1w4vhkzdb004p6f7dln6d0zw1xx12k6g4zr011qsn8ds0qcr7c3w"; depends=[affxparser Biobase BiocGenerics Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - peakPantheR = derive2 { name="peakPantheR"; version="1.14.0"; sha256="0nnks04qq1mmn3x406l4chyplmb2wfp2lhx314zrsjbsj16jkzrf"; depends=[bslib doParallel DT foreach ggplot2 gridExtra lubridate minpack_lm MSnbase mzR pracma scales shiny shinycssloaders stringr XML]; }; - peco = derive2 { name="peco"; version="1.12.0"; sha256="0as9afkw14yjvn5j7n0rl0xcd8dd3mbc20rkxq0iqrw30gcpsz28"; depends=[assertthat circular conicfit doParallel foreach genlasso scater SingleCellExperiment SummarizedExperiment]; }; - pengls = derive2 { name="pengls"; version="1.6.0"; sha256="1hsa0bm2b5srmzw1wnz1mdr3v9a2ykzlhw5disl5m3s2hcinwa68"; depends=[BiocParallel glmnet nlme]; }; - pepStat = derive2 { name="pepStat"; version="1.34.0"; sha256="0q35l28sdbai25a6ik9qw4jyk2c3zr6qnryqaxa9cvyadyj0zqcj"; depends=[Biobase data_table fields GenomicRanges ggplot2 IRanges limma plyr]; }; - pepXMLTab = derive2 { name="pepXMLTab"; version="1.34.0"; sha256="1dw9306g7ywfjfyvpqgvhw8vnqxw64kvyb1mv69xvz6irk47s3z7"; depends=[XML]; }; - periodicDNA = derive2 { name="periodicDNA"; version="1.10.0"; sha256="15xxixmzc8c9yidh66v09cmd342n27i65dwxla6bwj8vvxspdwcs"; depends=[BiocParallel Biostrings BSgenome cowplot GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr rtracklayer S4Vectors zoo]; }; - pfamAnalyzeR = derive2 { name="pfamAnalyzeR"; version="1.0.1"; sha256="0zff887lc4bjrv683kqsw47vjwmf6886wybklsf2wd6hpy23mxfy"; depends=[dplyr magrittr readr stringr tibble]; }; - pgca = derive2 { name="pgca"; version="1.24.0"; sha256="1bk4h9vczj99wpw0gjwlyky8fp7i3qxcq59rz57fbgamiscx2prg"; depends=[]; }; - phantasus = derive2 { name="phantasus"; version="1.20.2"; sha256="1fbc7flz9lbhvms4il7mbivw8n92lmbw4ipds43cr72njmhzqg5s"; depends=[AnnotationDbi assertthat Biobase ccaPP curl data_table DESeq2 fgsea GEOquery ggplot2 gtable htmltools httpuv httr jsonlite limma Matrix opencpu pheatmap protolite rhdf5 Rook scales stringr svglite]; }; - phemd = derive2 { name="phemd"; version="1.16.0"; sha256="1gdj0hnp61yd7djxvhafhgw6mlrzkfdxq0w4phq2kqkdmz3br072"; depends=[Biobase BiocGenerics cluster cowplot destiny ggplot2 igraph maptree monocle phateR pheatmap pracma RANN RColorBrewer reticulate Rtsne S4Vectors scatterplot3d Seurat SingleCellExperiment SummarizedExperiment transport VGAM]; }; - phenoTest = derive2 { name="phenoTest"; version="1.48.0"; sha256="0smkszpz13iqffghxfi49xy35b9bsjkavckhkgm7cv0pl05iibvg"; depends=[annotate AnnotationDbi Biobase biomaRt BMA Category ellipse genefilter ggplot2 gplots GSEABase Heatplus hgu133a_db Hmisc hopach limma mgcv survival xtable]; }; - phenomis = derive2 { name="phenomis"; version="1.2.0"; sha256="08nhg8cafnxwarf21fra0sih3dbgca3db3dxgnxd0g69a11g91p4"; depends=[Biobase biodb biodbChebi data_table futile_logger ggplot2 ggrepel htmlwidgets igraph limma MultiAssayExperiment MultiDataSet plotly PMCMRplus ranger RColorBrewer ropls SummarizedExperiment tibble tidyr VennDiagram]; }; - phenopath = derive2 { name="phenopath"; version="1.24.0"; sha256="004abcdgrfki3xg07rnpzi9zf88hzpvb77k379crss24rjg1q09z"; depends=[dplyr ggplot2 Rcpp SummarizedExperiment tibble tidyr]; }; - philr = derive2 { name="philr"; version="1.26.0"; sha256="12sc8lmvyvr41w20igcxd4p7g1mpc5kxvqxhmdlv0qkrzkrysmb7"; depends=[ape ggplot2 ggtree phangorn tidyr]; }; - phosphonormalizer = derive2 { name="phosphonormalizer"; version="1.24.0"; sha256="15ias4dyriirc2zb0zyhiwgq7f4r9zvl609xjj8qv3zqr02lrr6r"; depends=[matrixStats plyr]; }; - phyloseq = derive2 { name="phyloseq"; version="1.44.0"; sha256="0rmv8f1m8ck97v991wdly3fma2rjczhi974lh7ikwx6rcx6fp9ah"; depends=[ade4 ape Biobase BiocGenerics biomformat Biostrings cluster data_table foreach ggplot2 igraph multtest plyr reshape2 scales vegan]; }; - piano = derive2 { name="piano"; version="2.16.0"; sha256="0rm9afgq4n7yinmx09b0xd17wgzhbswm80vcjmmwxr6fv1741xfy"; depends=[Biobase BiocGenerics DT fgsea gplots htmlwidgets igraph marray relations scales shiny shinydashboard shinyjs visNetwork]; }; - pickgene = derive2 { name="pickgene"; version="1.72.0"; sha256="0yp83zmcbk1jlkcybcpgijgb49hdbxiygdd5yi0a5rv6mb8z0k83"; depends=[MASS]; }; - pipeComp = derive2 { name="pipeComp"; version="1.10.0"; sha256="0xqmlg7dzmdancw9rkfhlpgisdw5zk86qn9blx5c7zzbzp8p9qkb"; depends=[aricode BiocParallel circlize clue cluster ComplexHeatmap cowplot dplyr ggplot2 intrinsicDimension knitr Matrix matrixStats randomcoloR RColorBrewer reshape2 Rtsne S4Vectors scales scater scran Seurat SingleCellExperiment SummarizedExperiment uwot viridisLite]; }; - pipeFrame = derive2 { name="pipeFrame"; version="1.16.0"; sha256="0wm8irq03pgq34182a55m7rinrqa86qxvag42fb532hjqw5wx074"; depends=[Biostrings BSgenome digest GenomeInfoDb magrittr rmarkdown visNetwork]; }; - planet = derive2 { name="planet"; version="1.8.0"; sha256="1l5pxwnyz4mrvflllvba76rg2s7m1v3ywfdqxpzmxbyrf7djphlc"; depends=[dplyr magrittr tibble]; }; - planttfhunter = derive2 { name="planttfhunter"; version="1.0.0"; sha256="13gc2yial5h7f4370a6maw3nj0g47mdixdwiqjqxrzz97amj9bxb"; depends=[Biostrings SummarizedExperiment]; }; - plgem = derive2 { name="plgem"; version="1.72.0"; sha256="1kzrscaqsrsvdq2c9g93l7bjmv1s5p1l3cbrz6skkqls9h4gsw08"; depends=[Biobase MASS]; }; - plier = derive2 { name="plier"; version="1.70.0"; sha256="0hfg428pk5dwlyf9csvi138048hq7lv55ybwd9yri26s4anf7108"; depends=[affy Biobase]; }; - plotGrouper = derive2 { name="plotGrouper"; version="1.18.0"; sha256="1aiwl9pawf5xvv7951rd6g9ylqdgzv7s9rd0pam7v8yq1cx8z2q0"; depends=[colourpicker dplyr egg ggplot2 ggpubr gridExtra gtable Hmisc magrittr readr readxl rlang scales shiny shinythemes stringr tibble tidyr]; }; - plotgardener = derive2 { name="plotgardener"; version="1.6.4"; sha256="0larzjgyrnj1yv7vmapid0r6nrzzhjx8f3lh9py999rmh23gcx93"; depends=[curl data_table dplyr ggplotify IRanges plyranges purrr RColorBrewer Rcpp rlang strawr withr]; }; - plyranges = derive2 { name="plyranges"; version="1.20.0"; sha256="1qv8snpcxpg16v5ji7sq3bnmgrgghz9h4mh246mcnnxfhi44b6nv"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges IRanges magrittr rlang Rsamtools rtracklayer S4Vectors tidyselect]; }; - pmm = derive2 { name="pmm"; version="1.32.0"; sha256="1ps23z0n3bhcbbc2c5glni7x0d7fv6q3xmy97mcr2wb5ld78aqlq"; depends=[lme4]; }; - pmp = derive2 { name="pmp"; version="1.12.0"; sha256="0h9lav44rbisp5wybijng0jhca0hk2fhy65vy9yvw9hx0nk7vid9"; depends=[ggplot2 impute matrixStats missForest pcaMethods reshape2 S4Vectors SummarizedExperiment]; }; - podkat = derive2 { name="podkat"; version="1.32.0"; sha256="1shxxk3bqc9vn6k1n3x02xna54zfq8ka4jqi9jvbqldm6kzc7fc9"; depends=[Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp Rhtslib Rsamtools]; }; - pogos = derive2 { name="pogos"; version="1.20.0"; sha256="0l3p484i32cdphm807zzgh8pdy4w2ld6qg8nfw5sc6ighym5qbbb"; depends=[ggplot2 httr ontoProc rjson S4Vectors shiny]; }; - polyester = derive2 { name="polyester"; version="1.36.0"; sha256="16afzb193dbn9ya0215jxfl0x8ks3qxd9mk575ck2avnggipjqqv"; depends=[Biostrings IRanges limma logspline S4Vectors zlibbioc]; }; - powerTCR = derive2 { name="powerTCR"; version="1.20.0"; sha256="1x5k63x9q4fibsc3w7v9c2065af46f564fqdr9hpjrpr3nvc7gf6"; depends=[cubature doParallel evmix foreach magrittr purrr truncdist vegan VGAM]; }; - ppcseq = derive2 { name="ppcseq"; version="1.8.1"; sha256="0sqfhcr84zj18f6zgfjhi2aaaxz82rss5f0zrcs7niag6m3s86zd"; depends=[benchmarkme BH dplyr edgeR foreach ggplot2 lifecycle magrittr purrr Rcpp RcppEigen RcppParallel rlang rstan rstantools StanHeaders tibble tidybayes tidyr]; }; - pqsfinder = derive2 { name="pqsfinder"; version="2.16.0"; sha256="0mzh9h3p6q7718lxp9827l92phb4v9hj0sbw0fli2yagb7rq8bll"; depends=[BH Biostrings GenomicRanges IRanges Rcpp S4Vectors]; }; - pram = derive2 { name="pram"; version="1.16.0"; sha256="19g3xd5yncaws1x6j1lahd08j075zn9hhyqjlsfgwxi0d3a8mg8w"; depends=[BiocGenerics BiocParallel data_table GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; - prebs = derive2 { name="prebs"; version="1.40.0"; sha256="0sc53wqwxiczc95hld4sbh3p0dd0di6648k34jibbhxcslr2vaji"; depends=[affy Biobase GenomeInfoDb GenomicAlignments GenomicRanges IRanges RPA S4Vectors]; }; - preciseTAD = derive2 { name="preciseTAD"; version="1.10.0"; sha256="14byrbkha56h8ds64sfiipc60qcmgy860snxzfqhpzqqh7li04i7"; depends=[caret cluster dbscan doSNOW e1071 foreach GenomicRanges gtools IRanges ModelMetrics pbapply pROC PRROC randomForest rCGH S4Vectors]; }; - preprocessCore = derive2 { name="preprocessCore"; version="1.62.1"; sha256="0z37ag22j1wh80vwq1kyr99rvadj9ppkddapfqyql3vj5x44cf4d"; depends=[]; }; - primirTSS = derive2 { name="primirTSS"; version="1.18.0"; sha256="1gi66d04yncgvk7mdliwy2riflf08yvhkg6i4p56z5cnq3g4fdac"; depends=[BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg38 dplyr GenomicRanges GenomicScores Gviz IRanges JASPAR2018 phastCons100way_UCSC_hg38 purrr R_utils rtracklayer S4Vectors shiny stringr TFBSTools tibble tidyr]; }; - proActiv = derive2 { name="proActiv"; version="1.10.0"; sha256="1g1v01gx652ivi4h6fwlpdj5xig4z47fnc3dg6qy4cfryywh11sy"; depends=[AnnotationDbi BiocParallel data_table DESeq2 dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges rlang S4Vectors scales SummarizedExperiment tibble]; }; - proBAMr = derive2 { name="proBAMr"; version="1.34.0"; sha256="1x3fdr8m8cajp723piby2s3xakd5v7a4vqqdab6qhy1x5kmycwal"; depends=[AnnotationDbi Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer]; }; - proDA = derive2 { name="proDA"; version="1.14.0"; sha256="03q475s33ip05im7ib9a90n08dka52ff5c9s78g0sgkhq6hsff4x"; depends=[BiocGenerics extraDistr S4Vectors SummarizedExperiment]; }; - procoil = derive2 { name="procoil"; version="2.28.0"; sha256="0gqfdi2931fgd4wpbqik772s706k2rmcnsb1qhb3lxxdzmjhxxgv"; depends=[Biostrings kebabs S4Vectors]; }; - profileScoreDist = derive2 { name="profileScoreDist"; version="1.28.0"; sha256="1yx9csmyvqhni6id7yz6f45ancdrv02iikr3lv354kgi239ffcpz"; depends=[BiocGenerics Rcpp]; }; - profileplyr = derive2 { name="profileplyr"; version="1.16.0"; sha256="0xq5qwymsz2z5mq0f95d7jwdfa3idpbk22h6kqhcqlw7mch7xzwl"; depends=[BiocGenerics BiocParallel ChIPseeker circlize ComplexHeatmap dplyr EnrichedHeatmap GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges magrittr org_Hs_eg_db org_Mm_eg_db pheatmap R_utils rGREAT rjson rlang Rsamtools rtracklayer S4Vectors soGGi SummarizedExperiment tidyr tiff TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene]; }; - progeny = derive2 { name="progeny"; version="1.22.0"; sha256="047x6by3xa15gvi3kny5pkqxaq8d2kzcfi55ic5j7a351715l6l7"; depends=[Biobase decoupleR dplyr ggplot2 ggrepel gridExtra reshape2 tidyr]; }; - projectR = derive2 { name="projectR"; version="1.16.0"; sha256="1c6jafpmw310s6kdnfdagzs9ylxbisxrwlcrc796kyz9zswidsmj"; depends=[cluster CoGAPS dplyr ggalluvial ggplot2 limma NMF RColorBrewer reshape2 ROCR scales viridis]; }; - protGear = derive2 { name="protGear"; version="1.4.0"; sha256="18cxiyzqwkl7yjsx8cpcs3hkm67k6gq7hgy9mdl05pgmbzg9af9s"; depends=[Biobase data_table dplyr factoextra FactoMineR flexdashboard genefilter GGally ggplot2 ggpubr gtools htmltools Kendall knitr limma magrittr MASS pheatmap plotly plyr purrr readr remotes rlang rmarkdown shiny shinydashboard styler tibble tidyr vsn]; }; - proteasy = derive2 { name="proteasy"; version="1.2.0"; sha256="1mfk69k44krdj4wp6xpil391j9jrppyx1crvra525p8hahzc2d5m"; depends=[AnnotationFilter data_table EnsDb_Hsapiens_v86 EnsDb_Mmusculus_v79 EnsDb_Rnorvegicus_v79 ensembldb Rcpi stringr]; }; - proteinProfiles = derive2 { name="proteinProfiles"; version="1.40.0"; sha256="1m4qs5bgpb3v6syhxzm7nbxz9q4mlh5pm628yzqrhf5hyijx4hld"; depends=[]; }; - psichomics = derive2 { name="psichomics"; version="1.26.0"; sha256="1v0f2bs677vb2qrqnx1mcw4sfz2f7wcv77imyxza4xmxq7i48yp0"; depends=[AnnotationDbi AnnotationHub BiocFileCache cluster colourpicker data_table digest dplyr DT edgeR fastICA fastmatch ggplot2 ggrepel highcharter htmltools httr jsonlite limma pairsD3 plyr purrr R_utils Rcpp recount reshape2 Rfast shiny shinyBS shinyjs stringr SummarizedExperiment survival XML xtable]; }; - psygenet2r = derive2 { name="psygenet2r"; version="1.32.2"; sha256="077r9xmnqig9kiipgwg1drjq7vcbghv98jsvbs3iwmxk70ffm4lc"; depends=[BgeeDB Biobase biomaRt ggplot2 GO_db igraph labeling RCurl reshape2 stringr topGO]; }; - ptairMS = derive2 { name="ptairMS"; version="1.8.0"; sha256="1cjyhnx2qk1fxw4175c1nsnzgmgq1gqvn5f7gkzv4siznyyf28c5"; depends=[Biobase bit64 chron data_table doParallel DT enviPat foreach ggplot2 ggpubr gridExtra Hmisc minpack_lm MSnbase plotly Rcpp rhdf5 rlang scales shiny shinyscreenshot signal]; }; - puma = derive2 { name="puma"; version="3.42.0"; sha256="0af5yq8g0cczal9gc7cxxcygwzlj84gnlabhg0inqpdanajk4ysv"; depends=[affy affyio Biobase mclust oligo oligoClasses]; }; - pvac = derive2 { name="pvac"; version="1.48.0"; sha256="1jhnlsk11cjv83fx4d3mj561rpcy8vsvsa3lypwl0fphh9hfrwq0"; depends=[affy Biobase]; }; - pvca = derive2 { name="pvca"; version="1.40.0"; sha256="0mgpnn5n20c8as7z06x2ssmxvl5rz5q40xf38ryxc0gh5ch1zra2"; depends=[Biobase lme4 Matrix vsn]; }; - pwOmics = derive2 { name="pwOmics"; version="1.32.0"; sha256="1ph2749pd5zgjbnraq7j9ixfqx9ivlzj9xw845z9m9xlq409gq06"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics biomaRt data_table GenomicRanges gplots graph igraph rBiopaxParser STRINGdb]; }; - pwrEWAS = derive2 { name="pwrEWAS"; version="1.14.0"; sha256="1913h2syad9mfspxjvmrwm0mrcklbcl89lj04rn5x0xgfk8rk58a"; depends=[abind BiocManager CpGassoc doParallel doSNOW foreach genefilter ggplot2 limma pwrEWAS_data shiny shinyBS shinyWidgets truncnorm]; }; - qPLEXanalyzer = derive2 { name="qPLEXanalyzer"; version="1.18.0"; sha256="0v9yqkp3njmswf29y4d7zlnlpbnvhlnpbllh91z6gr0k8i3wfq9d"; depends=[assertthat Biobase BiocGenerics Biostrings dplyr ggdendro ggplot2 IRanges limma magrittr MSnbase preprocessCore purrr RColorBrewer readr rlang scales stringr tibble tidyr tidyselect]; }; - qckitfastq = derive2 { name="qckitfastq"; version="1.16.0"; sha256="1ybkm3hps3rf35pm70vayxjw9pi6pr3z4clvy6v00xsg1svf1fdm"; depends=[data_table dplyr ggplot2 magrittr Rcpp reshape2 rlang RSeqAn seqTools zlibbioc]; }; - qcmetrics = derive2 { name="qcmetrics"; version="1.38.0"; sha256="1641m5v4syan3mvmgciz190yj9z64wrijqaxpm1wjid2alk818wa"; depends=[Biobase knitr pander S4Vectors xtable]; }; - qmtools = derive2 { name="qmtools"; version="1.4.0"; sha256="1fcs5wnkkls69qgx7qqw6wdm1yfnm1p4j20n04d3brvjh45dcbk3"; depends=[ggplot2 heatmaply igraph limma MsCoreUtils patchwork rlang scales SummarizedExperiment VIM]; }; - qpcrNorm = derive2 { name="qpcrNorm"; version="1.58.0"; sha256="0zldz1cplrc82v922w4shankrsv57cq9bcsl6gnm9njx3gvc4h5m"; depends=[affy Biobase limma]; }; - qpgraph = derive2 { name="qpgraph"; version="2.34.2"; sha256="0h4xzyin9fsq3f2hw0a2igml2a0jq4h6gi6yi91ngi4fghb3vdn7"; depends=[annotate AnnotationDbi Biobase BiocParallel GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges Matrix mvtnorm qtl Rgraphviz S4Vectors]; }; - qsea = derive2 { name="qsea"; version="1.26.0"; sha256="0v6kk5z1lcnrk5qgiraiz9md2m5s8jn5yn3wpavcrbsyz7lbls2n"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges gtools HMMcopy IRanges limma Rsamtools rtracklayer S4Vectors zoo]; }; - qsmooth = derive2 { name="qsmooth"; version="1.16.0"; sha256="1krai8pb4xrmxvxa3s08i4z10gk90fnparfl5rqq2qrrzypclild"; depends=[Hmisc SummarizedExperiment sva]; }; - qsvaR = derive2 { name="qsvaR"; version="1.4.0"; sha256="0ppnkz75p3akj497ksv0xyjbsz8nac3cganhfh2yasiv1y2jb44c"; depends=[ggplot2 SummarizedExperiment sva]; }; - quantiseqr = derive2 { name="quantiseqr"; version="1.8.0"; sha256="1xifrpmfbdzp944h8n85r9dw3rp3dd90v4fc79919ncpj4229kal"; depends=[Biobase ggplot2 limSolve MASS preprocessCore rlang SummarizedExperiment tidyr]; }; - quantro = derive2 { name="quantro"; version="1.34.0"; sha256="08m94q65c11isbkx9xljm2bx2aq2rml1bqh5i1cg81xg2ilm9h6a"; depends=[Biobase doParallel foreach ggplot2 iterators minfi RColorBrewer]; }; - quantsmooth = derive2 { name="quantsmooth"; version="1.66.0"; sha256="05lja0viz5jgc7g3b8qfhd1x596vczid0dz8278qpl4zwv9i17vx"; depends=[quantreg]; }; - qusage = derive2 { name="qusage"; version="2.34.0"; sha256="1m0bmyzygmq7hqc8iql8lqmpd21aqr6ilyiwv076jyfb3snvv1qi"; depends=[Biobase emmeans fftw limma nlme]; }; - qvalue = derive2 { name="qvalue"; version="2.32.0"; sha256="1552390pf3wrrir6c9xshgll69a33fhbdnh2cvpnznma1ag490ki"; depends=[ggplot2 reshape2]; }; - r3Cseq = derive2 { name="r3Cseq"; version="1.46.0"; sha256="1wpjsiy9qh45h3k5s79w4zhkma5h4gvyf2sa8l934mx0jl16k0q2"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges IRanges qvalue RColorBrewer Rsamtools rtracklayer sqldf VGAM]; }; - rBiopaxParser = derive2 { name="rBiopaxParser"; version="2.40.0"; sha256="19mhbsff9z0ii1y0x844l9y11hpnp4rir3xifj6qj3dzvbfmlsw4"; depends=[data_table XML]; }; - rCGH = derive2 { name="rCGH"; version="1.30.0"; sha256="18nwbxv0z8w0yxlwbwxpvh09hjzijrbxxlw1jic0sqwpf2p7rkvw"; depends=[aCGH affy AnnotationDbi DNAcopy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges lattice limma mclust org_Hs_eg_db plyr shiny TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - rDGIdb = derive2 { name="rDGIdb"; version="1.26.0"; sha256="1rjrk730riv3qc2g92s3lxzcwx9q9z5kfjsq3w50ng54f5nd7kka"; depends=[httr jsonlite]; }; - rGADEM = derive2 { name="rGADEM"; version="2.48.0"; sha256="08li2wql2zhg06z0rjws9qcnv3ishgnpc6k8xyjcf7yfyg7qpk1d"; depends=[Biostrings BSgenome GenomicRanges IRanges seqLogo]; }; - rGREAT = derive2 { name="rGREAT"; version="2.2.0"; sha256="0qq3fqzd973jlf6ibfww5yicnyz2qvs2b2mn35p77k2mp4d7qp52"; depends=[AnnotationDbi circlize digest doParallel DT foreach GenomeInfoDb GenomicFeatures GenomicRanges GetoptLong GlobalOptions GO_db IRanges org_Hs_eg_db progress RColorBrewer Rcpp RCurl rjson S4Vectors shiny TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - rGenomeTracks = derive2 { name="rGenomeTracks"; version="1.6.0"; sha256="0i00a109gnsv3ac9lc2qj89ma94xrfpp6794v2i7r509vjna96n1"; depends=[imager reticulate rGenomeTracksData]; }; - rRDP = derive2 { name="rRDP"; version="1.34.0"; sha256="19nxnwysjwzpp16mwyf693qgla3473ppk4s0h1d1kcxf45g170af"; depends=[Biostrings]; }; - rSWeeP = derive2 { name="rSWeeP"; version="1.12.0"; sha256="0ph157ngm117sy0bfpmaq5h2wxqakpgymchvwznbgybjdcmz1awf"; depends=[pracma]; }; - rScudo = derive2 { name="rScudo"; version="1.16.0"; sha256="0wnlgvl3j1jn8yh1938f00c5zhlfpk8zrzvll15pakbqyvjpxjkr"; depends=[Biobase BiocGenerics igraph S4Vectors stringr SummarizedExperiment]; }; - rTRM = derive2 { name="rTRM"; version="1.38.0"; sha256="1gw5fmcfp23gn9142336c4gqx9i717z17898627z52q0j175788r"; depends=[AnnotationDbi DBI igraph RSQLite]; }; - rTRMui = derive2 { name="rTRMui"; version="1.38.0"; sha256="1awwwj3n2chi85fg5xv7f7djsvacyvg37ggq0rc3rlbjzz0mlcxb"; depends=[MotifDb org_Hs_eg_db org_Mm_eg_db rTRM shiny]; }; - rWikiPathways = derive2 { name="rWikiPathways"; version="1.20.0"; sha256="0p7q4kpw3ga1hdmbivcc8r5si3gjhicf628j7kyv3zf1f9ngda9f"; depends=[data_table httr RCurl rjson tidyr XML]; }; - rain = derive2 { name="rain"; version="1.34.0"; sha256="1ywx46yp81mam9g8fxqg74wm5pkslqi7asybxc3n19b3zsmkyvma"; depends=[gmp multtest]; }; - ramr = derive2 { name="ramr"; version="1.8.0"; sha256="1hbqfn4rbn382wcaar7yhik8bcxrn5jjssq1cj2w7sm4ilnd0abv"; depends=[BiocGenerics doParallel doRNG EnvStats ExtDist foreach GenomicRanges ggplot2 IRanges matrixStats reshape2 S4Vectors]; }; - ramwas = derive2 { name="ramwas"; version="1.24.0"; sha256="1ip4l9q9ihng73k372zp7wqraabpkl6h56a6lrpmb1qf0mgzpw5m"; depends=[BiocGenerics biomaRt Biostrings digest filematrix GenomicAlignments glmnet KernSmooth Rsamtools]; }; - randPack = derive2 { name="randPack"; version="1.46.0"; sha256="17mx9yml1izsjfwg5z720sc162cphzva9dxdzvvp1yb72x73q8x1"; depends=[Biobase]; }; - randRotation = derive2 { name="randRotation"; version="1.12.0"; sha256="0fdh6d5fa3xhd06d5idsqy5z377b962lmrk9qdyv2j2l2h1if2m4"; depends=[Rdpack]; }; - rawrr = derive2 { name="rawrr"; version="1.8.1"; sha256="1xqqyjd7f9m247shhzhw47ihwdbpvnrj9aknh23w5mhcnai4awyl"; depends=[]; }; - rbsurv = derive2 { name="rbsurv"; version="2.58.0"; sha256="0mpqhbqd4qr4kc9b11p104i1fjhcgskfwfphwdqyh10g0mh407sk"; depends=[Biobase survival]; }; - rcellminer = derive2 { name="rcellminer"; version="2.22.0"; sha256="028r51v4ycxv5rr9ln5q6si3jq5vviryq6i3cbwg3ma6dqzbvasd"; depends=[Biobase ggplot2 gplots rcellminerData shiny stringr]; }; - rebook = derive2 { name="rebook"; version="1.10.1"; sha256="0246cf3s7ijq588frdyyjxvgg5hnpnic2xl7gk7wksd30j9gzwls"; depends=[BiocStyle CodeDepends dir_expiry filelock knitr rmarkdown]; }; - receptLoss = derive2 { name="receptLoss"; version="1.12.0"; sha256="1ac0gkb05c576mphjccxk33swmqnizmwqywmzs6zrq146anl04m0"; depends=[dplyr ggplot2 magrittr SummarizedExperiment tidyr]; }; - reconsi = derive2 { name="reconsi"; version="1.12.0"; sha256="1955gccxry425d9d0fg41v5ravgqbd7f9jdydnzszfwz3glbr476"; depends=[ggplot2 ks Matrix matrixStats phyloseq reshape2]; }; - recount = derive2 { name="recount"; version="1.26.0"; sha256="0d50j6y0nnz1f4n01yk4p38nkbwjvkgrmdcmdqi109gbk0n6fn41"; depends=[BiocParallel derfinder downloader GenomeInfoDb GenomicRanges GEOquery IRanges RCurl rentrez rtracklayer S4Vectors SummarizedExperiment]; }; - recount3 = derive2 { name="recount3"; version="1.10.2"; sha256="0hiddnh3bz9r38av0h12na87nrx9zh5dk741r6dnb2l4hcwl4299"; depends=[BiocFileCache data_table GenomicRanges httr Matrix R_utils rtracklayer S4Vectors sessioninfo SummarizedExperiment]; }; - recountmethylation = derive2 { name="recountmethylation"; version="1.10.0"; sha256="0i9p0xdrmv4ingwkwkmw74f6gfqznx2vhcf8qqzykw1p0h7jiyiw"; depends=[basilisk BiocFileCache DelayedMatrixStats HDF5Array minfi R_utils RCurl reticulate rhdf5 S4Vectors]; }; - recoup = derive2 { name="recoup"; version="1.28.0"; sha256="1nns8wh9i6plag4pwxa8nm257islw694l89flhxyx30y8pfwl59r"; depends=[BiocGenerics biomaRt Biostrings circlize ComplexHeatmap GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 httr IRanges Rsamtools RSQLite rtracklayer S4Vectors stringr]; }; - regionReport = derive2 { name="regionReport"; version="1.34.0"; sha256="1dpfmg8bnmm2wl1dgc9y9a8rmy8dvbcbv5877crgzhsmk25n03s6"; depends=[BiocStyle DEFormats derfinder DESeq2 GenomeInfoDb GenomicRanges knitr knitrBootstrap RefManageR rmarkdown S4Vectors SummarizedExperiment]; }; - regioneR = derive2 { name="regioneR"; version="1.32.0"; sha256="0grlqga9d6mch9l487fdll65wi0m2kpq2097igfhx185i8jvwsz1"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges memoise rtracklayer S4Vectors]; }; - regioneReloaded = derive2 { name="regioneReloaded"; version="1.2.0"; sha256="1wx198dc2ga7vpk8kca37v5d1b1ydz9l2z1xr029m8j6cxgzcx98"; depends=[cluster ggplot2 ggrepel RColorBrewer regioneR reshape2 Rtsne scales umap]; }; - regsplice = derive2 { name="regsplice"; version="1.26.0"; sha256="0yfdjrln2jhm84zd3qnk69gdbrm5p3l844f4lk9swmfgh8xq13sr"; depends=[edgeR glmnet limma pbapply S4Vectors SummarizedExperiment]; }; - regutools = derive2 { name="regutools"; version="1.12.0"; sha256="12ldh4gn0ni36mcykqg4wvsp7p3nnqgc2bddmc5bh1gamm5wlk9b"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings DBI GenomicRanges Gviz IRanges RCy3 RSQLite S4Vectors]; }; - restfulSE = derive2 { name="restfulSE"; version="1.22.0"; sha256="06029vslgw6sjg761x46ws2dwzrmbrwyf1v0brf7xasdjbaigpd7"; depends=[AnnotationDbi AnnotationHub bigrquery Biobase DBI DelayedArray dplyr ExperimentHub GO_db magrittr reshape2 rhdf5client rlang S4Vectors SummarizedExperiment]; }; - retrofit = derive2 { name="retrofit"; version="1.0.0"; sha256="0n9bi6gkssp13w8m4dwz9g4cpfvdjs4ydrm7p6b607pz94aggcyf"; depends=[Rcpp]; }; - rexposome = derive2 { name="rexposome"; version="1.22.0"; sha256="04zc3lyzvj3mq27w3zpk5sxk0agsbawgmalldmi51v3hcms286bv"; depends=[Biobase circlize corrplot FactoMineR ggplot2 ggrepel glmnet gplots gridExtra gtools Hmisc imputeLCMD lme4 lsr mice pryr reshape2 S4Vectors scales scatterplot3d stringr]; }; - rfPred = derive2 { name="rfPred"; version="1.38.0"; sha256="0li13d7dlwi5j1zw4q31l14y61pmc9ki2nmb7hwrzfwbppi08n7x"; depends=[data_table GenomeInfoDb GenomicRanges IRanges Rsamtools]; }; - rfaRm = derive2 { name="rfaRm"; version="1.11.2"; sha256="0kn0ljazqwck405z87ljhvhg84dikmfdg7asnrjm3z27l2xjcxjz"; depends=[Biostrings data_table httr IRanges magick rsvg rvest S4Vectors stringi xml2]; }; - rgoslin = derive2 { name="rgoslin"; version="1.4.0"; sha256="1bbac7i1k79livslclc2zlrw2dcnscwknjmbn4w9748hv9i27y6q"; depends=[dplyr Rcpp]; }; - rgsepd = derive2 { name="rgsepd"; version="1.32.0"; sha256="0bk5l4fa4zmd69fasvwqy4z41y0q49ja95r5baa8w4261w4x5jkx"; depends=[AnnotationDbi biomaRt DESeq2 GO_db goseq gplots org_Hs_eg_db SummarizedExperiment]; }; - rhdf5 = derive2 { name="rhdf5"; version="2.44.0"; sha256="1akbr55lylwp20b2j351h1gcj1sc5y2j2pjjdpz43m6b7mji23a0"; depends=[rhdf5filters Rhdf5lib]; }; - rhdf5client = derive2 { name="rhdf5client"; version="1.22.3"; sha256="1qhsr4np16fhxn4mzlv1krp41q7y6fwaydf7k0wq34r6gskg2mwz"; depends=[data_table DelayedArray httr rjson]; }; - rhdf5filters = derive2 { name="rhdf5filters"; version="1.12.1"; sha256="1v9wxa5q0iwphrmkf9x70jpbq9r9rqz2hm94smqnnpfxszila49m"; depends=[Rhdf5lib]; }; - ribor = derive2 { name="ribor"; version="1.12.0"; sha256="0qf6yracvzc1sxa40l24y0wx14dj7rr1s60qxircx5zzq7c3xa5m"; depends=[dplyr ggplot2 hash rhdf5 rlang S4Vectors tidyr yaml]; }; - ribosomeProfilingQC = derive2 { name="ribosomeProfilingQC"; version="1.12.0"; sha256="0q1fl1w2ab7hmzgyp8d66nfr0fl7d32gvbh851sr6g2vx7rbnknn"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome cluster EDASeq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfittext ggplot2 ggrepel IRanges motifStack Rsamtools Rsubread rtracklayer RUVSeq S4Vectors scales XVector]; }; - rifi = derive2 { name="rifi"; version="1.4.1"; sha256="0yprkxj5kkyy069pana3kjg4rixw58zw62qjcixc0y77sbny1h5r"; depends=[car cowplot doMC dplyr egg foreach ggplot2 nls2 nnet reshape2 rlang rtracklayer S4Vectors scales stringr SummarizedExperiment tibble]; }; - rifiComparative = derive2 { name="rifiComparative"; version="1.0.1"; sha256="12xaz05zsfx5rfmkypnz5xsaiai59rzl1ccb9bppsi8dsm8pkisw"; depends=[cowplot devtools doMC dplyr DTA egg foreach ggplot2 ggrepel LSD nnet reshape2 rlang rtracklayer S4Vectors scales stringr SummarizedExperiment tibble writexl]; }; - rmelting = derive2 { name="rmelting"; version="1.16.0"; sha256="0gwbdm35k7izirg75h5frx837l456mjfk1p21srdiv2960anwmic"; depends=[Rdpack rJava]; }; - rmspc = derive2 { name="rmspc"; version="1.6.0"; sha256="0fp3rn8684ywwmqwxig6p7wd0rzhngs9v3a231yjd47sk5yjq03f"; depends=[BiocManager GenomicRanges processx rtracklayer stringr]; }; - rnaEditr = derive2 { name="rnaEditr"; version="1.10.0"; sha256="0xd4hr8bpc2frx0vvxx64mdcqgnc7cx8zbsddz9969klpy3cmcmq"; depends=[BiocGenerics bumphunter corrplot GenomeInfoDb GenomicRanges IRanges logistf plyr S4Vectors survival]; }; - rnaseqcomp = derive2 { name="rnaseqcomp"; version="1.30.0"; sha256="0y6fmg1msk30kry0y199bsz8mkzs7yzpfriq756lnjv5r73274z3"; depends=[RColorBrewer]; }; - roar = derive2 { name="roar"; version="1.36.0"; sha256="0p5q6nyp8d0gl95rd89xrs08gv87m1q6d0x4ws2b6sd4gc1nw2ny"; depends=[BiocGenerics GenomeInfoDb GenomicAlignments GenomicRanges IRanges rtracklayer S4Vectors SummarizedExperiment]; }; - rols = derive2 { name="rols"; version="2.28.0"; sha256="0id962983i0r9chdlw469l8ghjsyiy9lk0j8dn697llz6rwsmbcd"; depends=[Biobase BiocGenerics httr jsonlite progress]; }; - ropls = derive2 { name="ropls"; version="1.32.0"; sha256="1cq5ixaxag5r6nvl73c8bznxkdjhxw1r7qx90ml7qm4jr7wyi173"; depends=[Biobase ggplot2 MultiAssayExperiment MultiDataSet plotly SummarizedExperiment]; }; - rprimer = derive2 { name="rprimer"; version="1.4.0"; sha256="0a023rl3wq3dbgvgxrmycbs1ryspwxmgd77rq5fkg1mbk0pnd0gc"; depends=[Biostrings bslib DT ggplot2 IRanges mathjaxr patchwork reshape2 S4Vectors shiny shinycssloaders shinyFeedback]; }; - rpx = derive2 { name="rpx"; version="2.8.0"; sha256="1ay127hn7hq3dhs2sb1ah8d1xvzldnmam8yxbwwhsymxfkhidy9h"; depends=[BiocFileCache curl jsonlite RCurl xml2]; }; - rqt = derive2 { name="rqt"; version="1.26.0"; sha256="0by212x06h2k6mcwzam78n4w7f9akl7qbnpdkyiy2dd6jiq89bdv"; depends=[car CompQuadForm glmnet Matrix metap pls ropls RUnit SummarizedExperiment]; }; - rqubic = derive2 { name="rqubic"; version="1.46.0"; sha256="0hshaxa19nk43x4nscsbzd8f0pa8138yaxz0lwfywrs2mya5y7jg"; depends=[biclust Biobase BiocGenerics]; }; - rrvgo = derive2 { name="rrvgo"; version="1.12.2"; sha256="1400y3mpyhbf0yzkfgj6bq03077da80y6g1gxr7rp3154260dql3"; depends=[AnnotationDbi ggplot2 ggrepel GO_db GOSemSim pheatmap shiny tm treemap umap wordcloud]; }; - rsbml = derive2 { name="rsbml"; version="2.58.0"; sha256="0mgg1qfvxgyjk6fw4x0cv486vrsgf1kbqr6nqhgxj6lk8w6909fm"; depends=[BiocGenerics graph]; }; - rsemmed = derive2 { name="rsemmed"; version="1.10.0"; sha256="06nbbymllyd7aa203mrip10q24xj249xhzhl3h9r8pdb7c4xh1f5"; depends=[dplyr igraph magrittr stringr]; }; - rtracklayer = derive2 { name="rtracklayer"; version="1.60.1"; sha256="06z02sz8zjg2lxp2q4qwhvh6dsi6srirdmhcdvmi3as50nnjmzd8"; depends=[BiocGenerics BiocIO Biostrings GenomeInfoDb GenomicAlignments GenomicRanges IRanges RCurl restfulr Rsamtools S4Vectors XML XVector zlibbioc]; }; - runibic = derive2 { name="runibic"; version="1.22.0"; sha256="0q67vyny6qsh6slcjpmvmd3i9qh71qf37nx1isb3dc06680708a1"; depends=[biclust Rcpp SummarizedExperiment testthat]; }; - sRACIPE = derive2 { name="sRACIPE"; version="1.16.0"; sha256="1318nrm65c5n2n4822nph7l83klrp1iik8jprr7j9qgbbzdlwwjh"; depends=[BiocGenerics ggplot2 gplots gridExtra htmlwidgets MASS RColorBrewer Rcpp reshape2 S4Vectors SummarizedExperiment umap visNetwork]; }; - sSNAPPY = derive2 { name="sSNAPPY"; version="1.4.6"; sha256="1hnm3yhbwc1wl76akcm9r1c1l6k424nicdcp0s9i531lnh7yg5fg"; depends=[dplyr edgeR ggforce ggplot2 ggraph graphite gtools igraph magrittr org_Hs_eg_db pheatmap reshape2 rlang stringr SummarizedExperiment tibble tidyr]; }; - sSeq = derive2 { name="sSeq"; version="1.38.0"; sha256="05c0pxw38bgijd39i92jxm3kwm0dihdff83cdh48saj240ynf7sp"; depends=[caTools RColorBrewer]; }; - safe = derive2 { name="safe"; version="3.40.1"; sha256="17m49wvqbwxmw0b08vp5s9qsm67x967xm8znb5nj32915cj9diif"; depends=[AnnotationDbi Biobase SparseM]; }; - sagenhaft = derive2 { name="sagenhaft"; version="1.70.0"; sha256="02q0y9r098rimqxm6hzbpkdsij0smg55amxy6pyahjh6yn5jcp91"; depends=[SparseM]; }; - sampleClassifier = derive2 { name="sampleClassifier"; version="1.24.0"; sha256="1ampbprwhzkfg2m1wil2vp5bskqbpql0b1gybz0hbq0f1m1dgcdw"; depends=[annotate e1071 ggplot2 MGFM MGFR]; }; - sangeranalyseR = derive2 { name="sangeranalyseR"; version="1.10.0"; sha256="1a2x9csp7q2z3hfzmnf145mxdl3lqwkccnwffpp16rhp358ld2m0"; depends=[ape BiocStyle Biostrings data_table DECIPHER DT excelR ggdendro gridExtra knitr logger openxlsx phangorn plotly reshape2 rmarkdown sangerseqR seqinr shiny shinycssloaders shinydashboard shinyjs shinyWidgets stringr zeallot]; }; - sangerseqR = derive2 { name="sangerseqR"; version="1.36.0"; sha256="0hhq5zsx4srd9ndr370m44f80qdlrqafjv1838wf65gzijffhfqb"; depends=[Biostrings shiny stringr]; }; - sarks = derive2 { name="sarks"; version="1.12.0"; sha256="1sa58j2zy1cakv5h0syv3v3zk13kyxb0wr2sa11q3s1znlip8a20"; depends=[binom Biostrings cluster IRanges rJava]; }; - satuRn = derive2 { name="satuRn"; version="1.8.0"; sha256="0frm7iblxkc8ajcdqrfgsvf4krn6x8cr3mx7fnzq06xij0mqm3sj"; depends=[BiocParallel boot ggplot2 limma locfdr Matrix pbapply SummarizedExperiment]; }; - savR = derive2 { name="savR"; version="1.37.0"; sha256="13wiw7isdmpwhynxjrhimy9yglcz1108k7nwa98vq9czq49zpada"; depends=[ggplot2 gridExtra reshape2 scales XML]; }; - scAnnotatR = derive2 { name="scAnnotatR"; version="1.6.0"; sha256="0mxq2dknrhgj1487kfshkayx963c7qdgxwmlh9fbfr0lwc7gljfn"; depends=[AnnotationHub ape caret data_tree dplyr e1071 ggplot2 kernlab pROC ROCR Seurat SingleCellExperiment SummarizedExperiment]; }; - scBFA = derive2 { name="scBFA"; version="1.14.0"; sha256="0wp9qrra0y5qf2ip0snfcy5wx1b89dxc0y6vsrggl4n4v2dd43l9"; depends=[copula DESeq2 ggplot2 MASS Matrix Seurat SingleCellExperiment SummarizedExperiment zinbwave]; }; - scBubbletree = derive2 { name="scBubbletree"; version="1.2.0"; sha256="0d6xrzyslpxjxmfqd9bjwvdxa17slgp8gsyz9s7m8ccpaqrd2xwk"; depends=[ape future future_apply ggplot2 ggtree patchwork proxy reshape2 scales Seurat]; }; - scCB2 = derive2 { name="scCB2"; version="1.10.0"; sha256="1mmabi88zz373lclaabdnp8p2wyq5kk41np6i7zysqpkp1xfc7k0"; depends=[doParallel DropletUtils edgeR foreach iterators Matrix rhdf5 Seurat SingleCellExperiment SummarizedExperiment]; }; - scClassify = derive2 { name="scClassify"; version="1.12.0"; sha256="15zv01x6s50vwp8hwdy7b1rgmphvvx9wbkpp1p1n2wwv2py4msmw"; depends=[BiocParallel Cepo cluster diptest ggplot2 ggraph hopach igraph limma Matrix mgcv minpack_lm mixtools proxy proxyC S4Vectors statmod]; }; - scDD = derive2 { name="scDD"; version="1.24.0"; sha256="1ndb1zcbdy00xkfx18slrm5bnld9ci5scysc37clhsq2lq5xb25z"; depends=[arm BiocParallel EBSeq fields ggplot2 mclust outliers S4Vectors scran SingleCellExperiment SummarizedExperiment]; }; - scDDboost = derive2 { name="scDDboost"; version="1.2.0"; sha256="1h10hi3czmzqxlbdi67b8ni3p9za7f2lfsw8z5dn2lxw1nn42c8q"; depends=[BH BiocParallel cluster EBSeq ggplot2 mclust Oscope Rcpp RcppEigen SingleCellExperiment SummarizedExperiment]; }; - scDataviz = derive2 { name="scDataviz"; version="1.10.0"; sha256="0sv92nzn8wwl9lxyl6rcdsid78i18hrda8smzhyfyd0yryl77x57"; depends=[corrplot flowCore ggplot2 ggrepel MASS matrixStats RColorBrewer reshape2 S4Vectors scales Seurat SingleCellExperiment umap]; }; - scDblFinder = derive2 { name="scDblFinder"; version="1.14.0"; sha256="0lvacrgfj9i8mwlcv5ykxs69hd3bm6bvr6fsddxffsr7cckpn31w"; depends=[BiocGenerics BiocNeighbors BiocParallel BiocSingular bluster DelayedArray GenomeInfoDb GenomicRanges igraph IRanges MASS Matrix Rsamtools rtracklayer S4Vectors scater scran scuttle SingleCellExperiment SummarizedExperiment xgboost]; }; - scFeatureFilter = derive2 { name="scFeatureFilter"; version="1.20.0"; sha256="0m1c5zsyfc25pdg2204i0bgl1lsbn23xcrgrsncbkgjbfg6klygq"; depends=[dplyr ggplot2 magrittr rlang tibble]; }; - scFeatures = derive2 { name="scFeatures"; version="1.0.0"; sha256="0lxfa89a4jscs6grwr75kgvmdng1ayplpfg1yq01fd7d1xn29vk2"; depends=[ape AUCell BiocParallel cli DelayedArray DelayedMatrixStats dplyr DT EnsDb_Hsapiens_v79 EnsDb_Mmusculus_v79 ensembldb glue GSVA gtools MatrixGenerics msigdbr proxyC reshape2 rmarkdown Seurat SingleCellSignalR SpatialExperiment spatstat_explore spatstat_geom SummarizedExperiment tidyr]; }; - scGPS = derive2 { name="scGPS"; version="1.14.1"; sha256="091abnxp5vax0ms4j806kqhwjrnariwcgnbg6h4lgq95aqmr71pm"; depends=[caret DESeq2 dplyr dynamicTreeCut fastcluster ggplot2 glmnet locfit Rcpp RcppArmadillo RcppParallel SingleCellExperiment SummarizedExperiment]; }; - scHOT = derive2 { name="scHOT"; version="1.12.0"; sha256="0l31lrxxq45fxbdif2lwq34v4la4lsk8y1aws5nlynsmp1mpxzmy"; depends=[BiocParallel ggforce ggplot2 igraph IRanges Matrix reshape S4Vectors SingleCellExperiment SummarizedExperiment]; }; - scMET = derive2 { name="scMET"; version="1.2.0"; sha256="1qb0i095pbw1yvn9sy61xl52r8hw2gyal93nq7fvws6h5gz6jrxw"; depends=[assertthat BH BiocStyle coda cowplot data_table dplyr ggplot2 logitnorm MASS Matrix matrixStats Rcpp RcppEigen RcppParallel rstan rstantools S4Vectors SingleCellExperiment StanHeaders SummarizedExperiment VGAM viridis]; }; - scMerge = derive2 { name="scMerge"; version="1.16.0"; sha256="0f6sm6gqzz7sfwlfzccg8ksv75zbk1pzy54wv7skvqxzfqpdv6dx"; depends=[batchelor BiocNeighbors BiocParallel BiocSingular cluster cvTools DelayedArray DelayedMatrixStats distr igraph M3Drop proxyC ruv S4Vectors scater scran SingleCellExperiment SummarizedExperiment]; }; - scPCA = derive2 { name="scPCA"; version="1.14.0"; sha256="0s1yxnzb2qvhiiss5g5v248xshp8faq3s996jg4znliyl0v3dc50"; depends=[assertthat BiocParallel cluster coop DelayedArray dplyr elasticnet kernlab Matrix MatrixGenerics matrixStats origami purrr Rdpack RSpectra ScaledMatrix sparsepca stringr tibble]; }; - scPipe = derive2 { name="scPipe"; version="2.0.0"; sha256="12kh6l9wndxxvya94a3d6y1ss0vz7waa3hf3ih3xaash0wfqmp6s"; depends=[AnnotationDbi basilisk BiocGenerics biomaRt Biostrings data_table dplyr DropletUtils flexmix GenomicAlignments GenomicRanges GGally ggplot2 glue hash IRanges magrittr MASS Matrix mclust MultiAssayExperiment org_Hs_eg_db org_Mm_eg_db purrr Rcpp reshape reticulate Rhtslib rlang robustbase Rsamtools Rsubread rtracklayer S4Vectors scales SingleCellExperiment stringr SummarizedExperiment testthat tibble tidyr zlibbioc]; }; - scRNAseqApp = derive2 { name="scRNAseqApp"; version="1.0.1"; sha256="07947931pa1f1nn5wkl7ia6m33w4hljggpr72b2klh0pi3qbkbx7"; depends=[bibtex bslib circlize ComplexHeatmap data_table DT GenomeInfoDb GenomicRanges ggdendro ggforce ggplot2 ggrepel ggridges gridExtra hdf5r htmltools IRanges jsonlite magrittr patchwork plotly RColorBrewer RefManageR Rsamtools rtracklayer S4Vectors scales scrypt Seurat SeuratObject shiny shinyhelper shinymanager SingleCellExperiment slingshot xfun xml2]; }; - scReClassify = derive2 { name="scReClassify"; version="1.6.0"; sha256="0f7jrl2kfp1rg70y2z2lbidxqy9bx5kgmn56ycp0mwi1q8fzm6ji"; depends=[e1071 randomForest SingleCellExperiment SummarizedExperiment]; }; - scRecover = derive2 { name="scRecover"; version="1.16.0"; sha256="0klxs99f59icrwsxz8v9pkmfljzzqrc49c7xzvk512fxz5cbcvwg"; depends=[bbmle BiocParallel doParallel foreach gamlss kernlab MASS Matrix penalized preseqR pscl rsvd SAVER]; }; - scRepertoire = derive2 { name="scRepertoire"; version="1.10.1"; sha256="0dfqyzw8777xjxcc6y7nx04npkm4qsrwdaxcsy749sawynpvn5hi"; depends=[doParallel dplyr ggalluvial ggplot2 ggraph igraph plyr powerTCR reshape2 rlang SeuratObject SingleCellExperiment stringdist stringr SummarizedExperiment tidygraph vegan]; }; - scShapes = derive2 { name="scShapes"; version="1.6.0"; sha256="0zzhyc64dwpl9bnr6myqqzvwynb3mz1xy9rjma956cqmbrxf82bx"; depends=[BiocParallel dgof emdbook magrittr MASS Matrix pscl VGAM]; }; - scTGIF = derive2 { name="scTGIF"; version="1.14.0"; sha256="1vqm7hc3myf8s6l7jl32hq8n1m98hhcbsqy37ghlwbds0i5gxvqk"; depends=[Biobase BiocStyle ggplot2 GSEABase igraph knitr msigdbr nnTensor plotly RColorBrewer Rcpp rmarkdown S4Vectors scales schex SingleCellExperiment SummarizedExperiment tagcloud tibble]; }; - scTHI = derive2 { name="scTHI"; version="1.12.0"; sha256="07hlk5sgvw3sqflpw0yxp57sby4nk5grbjxwsn62j3k3fk9y67am"; depends=[BiocParallel Rtsne]; }; - scTensor = derive2 { name="scTensor"; version="2.10.0"; sha256="1a3phvbsbl12g6yvw8zg0vakb4pgnamacxkhkxdm8rhlqlsbh8pb"; depends=[abind AnnotationDbi AnnotationHub BiocManager BiocStyle Category ccTensor checkmate crayon DOSE ggplot2 GOstats heatmaply igraph knitr MeSHDbi meshr nnTensor outliers plotly plotrix reactome_db ReactomePA rmarkdown RSQLite rTensor S4Vectors schex SingleCellExperiment SummarizedExperiment tagcloud visNetwork]; }; - scTreeViz = derive2 { name="scTreeViz"; version="1.6.0"; sha256="18jj4dywwi0l1d3djhlsqqz91hyldpaa8khb49h4q6jy4lb3khaq"; depends=[clustree data_table digest epivizr epivizrData epivizrServer ggplot2 ggraph httr igraph Matrix Rtsne S4Vectors scater scran Seurat SingleCellExperiment SummarizedExperiment sys]; }; - scanMiR = derive2 { name="scanMiR"; version="1.6.0"; sha256="11sx73bdq7yw0h1lxfky09dm7qhyl8aba1hdv6v9zc10x7q5zbsn"; depends=[BiocParallel Biostrings cowplot data_table GenomeInfoDb GenomicRanges ggplot2 ggseqlogo IRanges S4Vectors stringi]; }; - scanMiRApp = derive2 { name="scanMiRApp"; version="1.6.0"; sha256="16lvd1a2s7y7bh94c80i4rbjz1wgq36lr0z2mwq0nmyfccdw28xi"; depends=[AnnotationDbi AnnotationFilter AnnotationHub BiocParallel Biostrings data_table digest DT ensembldb fst GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 htmlwidgets IRanges Matrix plotly rintrojs rtracklayer S4Vectors scanMiR scanMiRData shiny shinycssloaders shinydashboard shinyjqui waiter]; }; - scater = derive2 { name="scater"; version="1.28.0"; sha256="0v6qaflv7b504yxxv6bmnlikg36bhfahgqxigpq6qcfrhqapmqck"; depends=[beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats densvis ggbeeswarm ggplot2 ggrastr ggrepel Matrix pheatmap RColorBrewer RcppML rlang Rtsne S4Vectors scuttle SingleCellExperiment SummarizedExperiment uwot viridis]; }; - scatterHatch = derive2 { name="scatterHatch"; version="1.6.0"; sha256="1pqnwddya89af9zglbh7mf5wys8lbkg64b48jgxgp7s672zskh4r"; depends=[ggplot2 plyr spatstat_geom]; }; - sccomp = derive2 { name="sccomp"; version="1.4.0"; sha256="1hb686ix9wa75qmw14r74b377wp7nclqnpj0vaza7cj5dk7sqlmg"; depends=[BH boot dplyr forcats ggplot2 ggrepel glue lifecycle magrittr patchwork purrr Rcpp RcppEigen RcppParallel readr rlang rstan rstantools scales SeuratObject SingleCellExperiment StanHeaders stringr tibble tidyr tidyselect]; }; - scde = derive2 { name="scde"; version="2.28.2"; sha256="1sfm82cppcrb3nsnw5p6l659yp432zi4i12g1gfn9c9k46pzwi7d"; depends=[BiocParallel Cairo edgeR extRemes flexmix MASS mgcv nnet pcaMethods quantreg RColorBrewer Rcpp RcppArmadillo rjson RMTstat Rook]; }; - scds = derive2 { name="scds"; version="1.16.0"; sha256="059gahl679if8xsfgpxmi3h9fiagb6v08rd6rs7yv96s3pb8qywn"; depends=[dplyr Matrix pROC S4Vectors SingleCellExperiment SummarizedExperiment xgboost]; }; - schex = derive2 { name="schex"; version="1.14.0"; sha256="06vzxg1yc2bj1bk5w7b74gx7a3c122kynv4v76m1cl8a5pwqpf5a"; depends=[cluster concaveman dplyr entropy ggforce ggplot2 hexbin scales Seurat shiny SingleCellExperiment]; }; - scifer = derive2 { name="scifer"; version="1.2.0"; sha256="0ib83zvigjwvvi5ydbizwilb36f7krgq5843jy4rwiaxnn4hsnfm"; depends=[Biostrings data_table DECIPHER dplyr flowCore ggplot2 gridExtra kableExtra knitr plyr rlang rmarkdown sangerseqR scales stringr tibble]; }; - scmap = derive2 { name="scmap"; version="1.22.3"; sha256="06i3r7zybwcgnak9ml2jaz7fy70zjqdh28v03ckaqhvck49kdqdm"; depends=[Biobase BiocGenerics dplyr e1071 ggplot2 googleVis matrixStats proxy randomForest Rcpp RcppArmadillo reshape2 S4Vectors SingleCellExperiment SummarizedExperiment]; }; - scmeth = derive2 { name="scmeth"; version="1.20.0"; sha256="15lnfibzqybqzjkv8c596rbm7smyfdifc7dhx6d4kqi1yacl9r0b"; depends=[AnnotationHub annotatr Biostrings BSgenome bsseq DelayedArray DT GenomeInfoDb GenomicRanges HDF5Array knitr reshape2 rmarkdown SummarizedExperiment]; }; - scone = derive2 { name="scone"; version="1.24.0"; sha256="0v3rd2h0n52qz9kqxa3l49rjfssfk252dy7j2nvi34y85win2p1w"; depends=[aroma_light BiocParallel boot class cluster compositions diptest edgeR fpc gplots hexbin limma MatrixGenerics matrixStats mixtools rARPACK RColorBrewer rhdf5 RUVSeq SingleCellExperiment SummarizedExperiment]; }; - scoreInvHap = derive2 { name="scoreInvHap"; version="1.22.0"; sha256="08wh1c9rvmyp45jaaa0zzb3p82qi8qnqn8dqxn8rg0cjv945dk8g"; depends=[BiocParallel Biostrings GenomicRanges snpStats SummarizedExperiment VariantAnnotation]; }; - scp = derive2 { name="scp"; version="1.10.1"; sha256="0x7kc2f5qqalyppakdragm9nwdph6ik7f8cysi1qvbxpxw9v3n8j"; depends=[dplyr magrittr matrixStats MsCoreUtils MultiAssayExperiment QFeatures S4Vectors SingleCellExperiment SummarizedExperiment]; }; - scran = derive2 { name="scran"; version="1.28.2"; sha256="1la55s14frvsjp8ly02fbrkzvv7lzvcd7jc1axmwh494b9zy5jmd"; depends=[beachmat BH BiocGenerics BiocParallel BiocSingular bluster DelayedArray DelayedMatrixStats dqrng edgeR igraph limma Matrix metapod Rcpp S4Vectors scuttle SingleCellExperiment statmod SummarizedExperiment]; }; - screenCounter = derive2 { name="screenCounter"; version="1.0.1"; sha256="1yl1sypx11f3iz6kfb5z58smwmkpdd1pm9fgkk6dsg7qm4p6j0la"; depends=[BiocParallel Rcpp S4Vectors SummarizedExperiment zlibbioc]; }; - scruff = derive2 { name="scruff"; version="1.18.0"; sha256="07mjd3y4kyd8536j9q8m3vxpfb2a92s0hb6wsgcpb2c45fxayg3c"; depends=[AnnotationDbi BiocGenerics BiocParallel Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 ggthemes plyr Rsamtools Rsubread rtracklayer S4Vectors scales ShortRead SingleCellExperiment stringdist SummarizedExperiment]; }; - scry = derive2 { name="scry"; version="1.12.0"; sha256="0406slld468m9lxswv1akcdmap6izvzz6zljyrs5av546nfxpmrz"; depends=[BiocSingular DelayedArray glmpca Matrix SingleCellExperiment SummarizedExperiment]; }; - scuttle = derive2 { name="scuttle"; version="1.10.3"; sha256="0nngajyfix3b4p072aqf2vbk346gpxq326vd3dnqmq4hryww3j9y"; depends=[beachmat BiocGenerics BiocParallel DelayedArray DelayedMatrixStats GenomicRanges Matrix Rcpp S4Vectors SingleCellExperiment SummarizedExperiment]; }; - scviR = derive2 { name="scviR"; version="1.0.0"; sha256="04yz41qzgy87frxnykvnsyf1kjaw629fr5hrjv9m4k5jdmqrc0bl"; depends=[basilisk BiocFileCache limma pheatmap reticulate S4Vectors scater shiny SingleCellExperiment SummarizedExperiment]; }; - sechm = derive2 { name="sechm"; version="1.8.0"; sha256="1wsf3bhxm48wvyl9g6hhcb1mgy6hds27w6yibyjs695gf4ni5p7p"; depends=[circlize ComplexHeatmap matrixStats randomcoloR S4Vectors seriation SummarizedExperiment]; }; - segmenter = derive2 { name="segmenter"; version="1.6.0"; sha256="04sfk7r3qg0jx1aqh7vhnmq5zy0ilg96zbzaqvjfg70bir5v6scd"; depends=[bamsignals ChIPseeker chromhmmData ComplexHeatmap GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; - selectKSigs = derive2 { name="selectKSigs"; version="1.12.0"; sha256="0l4f4yz9qj5lqay5z211jf6qp8frbdp4ra443rlcp2fpgnxhiw16"; depends=[gtools HiLDA magrittr Rcpp]; }; - semisup = derive2 { name="semisup"; version="1.24.0"; sha256="0q3b7yhi472k5dk5r3222mpnr5isqqkrakd2g9s3q8hvl3m4h38b"; depends=[VGAM]; }; - seq_hotSPOT = derive2 { name="seq.hotSPOT"; version="1.0.0"; sha256="1qb7rlfc9v7bqmh3dkj521gy9h41s3xrzyfp048gj3sjs78k5477"; depends=[hash R_utils]; }; - seq2pathway = derive2 { name="seq2pathway"; version="1.32.0"; sha256="1f3cxlqa8n79zldcjygz9sf4r3l8p4w2jm4v7898wayz13wvdm6w"; depends=[biomaRt GenomicRanges GSA nnet seq2pathway_data WGCNA]; }; - seqArchR = derive2 { name="seqArchR"; version="1.4.0"; sha256="1jd1bxk3hswcnbc1qn0j2sgrwrdfwnmbbypina6yyfizf4i7si8v"; depends=[BiocParallel Biostrings cli cluster cvTools fpc ggplot2 ggseqlogo MASS Matrix matrixStats prettyunits reshape2 reticulate]; }; - seqArchRplus = derive2 { name="seqArchRplus"; version="1.0.0"; sha256="0rr2fm0ygf65fmzwmi12ffdi3r7sbg8fb7snzx8nn1v36azaxriy"; depends=[BiocParallel Biostrings BSgenome ChIPseeker cli clusterProfiler cowplot factoextra forcats GenomeInfoDb GenomicRanges ggplot2 gridExtra heatmaps IRanges RColorBrewer S4Vectors scales seqArchR seqPattern]; }; - seqCAT = derive2 { name="seqCAT"; version="1.22.0"; sha256="0zy91ha910hkwfyb2yv5sr6s2vf46j09hchibs31i0apsaj8082d"; depends=[dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges rlang rtracklayer S4Vectors scales SummarizedExperiment tidyr VariantAnnotation]; }; - seqCNA = derive2 { name="seqCNA"; version="1.46.0"; sha256="0ycmb2fzhhlwpldgnjb52sgs3kavfc61ny2gb3w3093f5ng5hri8"; depends=[adehabitatLT doSNOW GLAD seqCNA_annot]; }; - seqLogo = derive2 { name="seqLogo"; version="1.66.0"; sha256="0727yrmm194gskrcpmq4fh0qmi6dnp70gx627psrpvzlk6vlcl8k"; depends=[]; }; - seqPattern = derive2 { name="seqPattern"; version="1.32.0"; sha256="033hss67dxi6fbvn6ya7vc61f60m20hwms9kmdia0icyp8nv2yil"; depends=[Biostrings GenomicRanges IRanges KernSmooth plotrix]; }; - seqTools = derive2 { name="seqTools"; version="1.34.0"; sha256="0sv8rxx8ialgh1v50ywh75ri7wzs6r6xi7c7xy4c6y2a897gv89s"; depends=[zlibbioc]; }; - seqbias = derive2 { name="seqbias"; version="1.48.0"; sha256="1sspl03m2hf6s5rw6nfqrycb236nvcgygql6apdlg3cjnikf090j"; depends=[Biostrings GenomicRanges Rhtslib zlibbioc]; }; - seqcombo = derive2 { name="seqcombo"; version="1.22.0"; sha256="1r3gmlh2c087dgffkxs6y05pmv87c8psmk13v8bjryc6z2xa3g3y"; depends=[ggplot2 igraph yulab_utils]; }; - seqsetvis = derive2 { name="seqsetvis"; version="1.20.0"; sha256="14j72hsghq7r3sp3y3spky8x618c6s2j25sqqk0kcxcmzc5gmzvn"; depends=[cowplot data_table eulerr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 ggplotify IRanges limma pbapply pbmcapply png RColorBrewer Rsamtools rtracklayer S4Vectors UpSetR]; }; - sesame = derive2 { name="sesame"; version="1.18.4"; sha256="1il33ygys6y72l8p3fhx301q16w9kylfy6w92b64n8gqkn6dmsmn"; depends=[BiocFileCache BiocParallel dplyr GenomeInfoDb GenomicRanges ggplot2 illuminaio IRanges MASS preprocessCore readr reshape2 S4Vectors sesameData stringr SummarizedExperiment tibble wheatmap]; }; - sevenC = derive2 { name="sevenC"; version="1.20.0"; sha256="0mgngw3cvqm25jjsymxwfhykc7riip28c5bvkfkb6xcbakp6bqj6"; depends=[BiocGenerics boot data_table GenomeInfoDb GenomicRanges InteractionSet IRanges purrr readr rtracklayer S4Vectors]; }; - sevenbridges = derive2 { name="sevenbridges"; version="1.30.0"; sha256="1sym0sjyn4ppsixmwxg84g669xf7jahmx76xl7qfk0m2zz9r0100"; depends=[curl data_table docopt httr jsonlite objectProperties S4Vectors stringr uuid yaml]; }; - shinyMethyl = derive2 { name="shinyMethyl"; version="1.36.1"; sha256="0hq1q66vjd9pwdwm9zx8q45ws65bn6cm87zmjmyc3md8dwvb8cck"; depends=[Biobase BiocGenerics htmltools MatrixGenerics minfi RColorBrewer shiny]; }; - shinyepico = derive2 { name="shinyepico"; version="1.8.0"; sha256="0f9zv3ds9l0bisp8lif0g664i0y59ygrlazhbdxkd7v9ypg22qz1"; depends=[data_table doParallel dplyr DT foreach GenomicRanges ggplot2 gplots heatmaply limma minfi plotly reshape2 rlang rmarkdown rtracklayer shiny shinycssloaders shinyjs shinythemes shinyWidgets statmod tidyr zip]; }; - sigFeature = derive2 { name="sigFeature"; version="1.18.0"; sha256="00gqfzbymmma6j0a9j6jf2pv4gahjh70a6pyp6kjnzs5zdmsh7z1"; depends=[BiocParallel biocViews e1071 Matrix nlme openxlsx pheatmap RColorBrewer SparseM SummarizedExperiment]; }; - siggenes = derive2 { name="siggenes"; version="1.74.0"; sha256="0h5asj2w4xgfj9xapjawmxldnhq789py39drlr8illyhcczkzkbz"; depends=[Biobase multtest scrime]; }; - sights = derive2 { name="sights"; version="1.26.0"; sha256="1q13lx4afw9mryjwhbnrn6izvg70a75sdqsmg2p4ymv7ipdk4gba"; depends=[ggplot2 lattice MASS qvalue reshape2]; }; - signatureSearch = derive2 { name="signatureSearch"; version="1.14.0"; sha256="0v7af0qg6kfbpz789sgd8v14ddnd0mkz1cmihik79r49xd99q4hk"; depends=[AnnotationDbi BiocGenerics BiocParallel clusterProfiler data_table DelayedArray DOSE dplyr ExperimentHub fastmatch fgsea ggplot2 GSEABase HDF5Array magrittr Matrix org_Hs_eg_db qvalue Rcpp reactome_db readr reshape2 rhdf5 RSQLite scales SummarizedExperiment tibble visNetwork]; }; - signeR = derive2 { name="signeR"; version="2.2.1"; sha256="09jpiq5sgcvrd5byqqx25hq2gzy01sqfgy90h2lq3bxzhzg8wbad"; depends=[ada BiocFileCache BiocGenerics Biostrings BSgenome bsplus class clue cowplot dplyr DT e1071 future future_apply GenomeInfoDb GenomicRanges ggplot2 ggpubr glmnet IRanges kknn listenv magrittr MASS maxstat nloptr NMF pheatmap PMCMRplus ppclust pROC proxy pvclust randomForest RColorBrewer Rcpp RcppArmadillo readr reshape2 rtracklayer scales shiny shinycssloaders shinydashboard shinyWidgets survival survivalAnalysis survminer tibble tidyr VariantAnnotation VGAM]; }; - signifinder = derive2 { name="signifinder"; version="1.2.1"; sha256="1xsbnk7igq5avg4lh63iwaqrp36cnqxdqmqqz13z7ls3nlgryq7q"; depends=[AnnotationDbi BiocGenerics ComplexHeatmap consensusOV cowplot DGEobj_utils dplyr ensembldb ggplot2 ggridges GSVA IRanges magrittr matrixStats maxstat openair org_Hs_eg_db patchwork RColorBrewer SummarizedExperiment survival survminer TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene viridis]; }; - sigsquared = derive2 { name="sigsquared"; version="1.32.0"; sha256="1xbza4mccyyby4wlv2fdi5afcqf3g069p83czprlvmfz2rym9vil"; depends=[Biobase survival]; }; - similaRpeak = derive2 { name="similaRpeak"; version="1.32.0"; sha256="0sjkzal9wixd421znrlgy6rbczkrqrdykcidm5jn1w48197aczh9"; depends=[R6]; }; - simpleSeg = derive2 { name="simpleSeg"; version="1.2.5"; sha256="17hg6nscvk5w3j0ii0qbn2v251nipglxdiq4ry6k5wyi3n92b7qn"; depends=[BiocParallel cytomapper EBImage S4Vectors spatstat_geom SummarizedExperiment terra]; }; - simplifyEnrichment = derive2 { name="simplifyEnrichment"; version="1.10.0"; sha256="1vs57j361fbwv7vaybs71vc208qn76djmbmakhwwcvxwrx77jp5f"; depends=[AnnotationDbi BiocGenerics circlize clue cluster colorspace ComplexHeatmap digest GetoptLong GlobalOptions GO_db GOSemSim Matrix org_Hs_eg_db proxyC slam tm]; }; - sincell = derive2 { name="sincell"; version="1.32.0"; sha256="09h47w87459k4vhmcjfi1vf47sh1q5qrbrasdg9jsg3cykwhj6vj"; depends=[cluster entropy fastICA fields ggplot2 igraph MASS proxy Rcpp reshape2 Rtsne scatterplot3d statmod TSP]; }; - single = derive2 { name="single"; version="1.4.0"; sha256="1khfbcyn0jwl5gcsmxzzzgqvd5hp73qmn8hpjs4rb54grv73jqwy"; depends=[BiocGenerics Biostrings dplyr GenomicAlignments IRanges reshape2 rlang Rsamtools stringr tidyr]; }; - singleCellTK = derive2 { name="singleCellTK"; version="2.10.0"; sha256="1dy5hikav4d9i5nl8cgrn0ykvn7027743lhwi5h6xphq7cl30pmv"; depends=[AnnotationHub ape batchelor Biobase BiocParallel celda celldex circlize cluster colorspace colourpicker ComplexHeatmap cowplot data_table DelayedArray DelayedMatrixStats DESeq2 dplyr DropletUtils DT eds enrichR ensembldb ExperimentHub fields ggplot2 ggplotify ggrepel ggtree gridExtra GSEABase GSVA GSVAdata igraph KernSmooth limma magrittr MAST Matrix matrixStats metap msigdbr multtest plotly plyr R_utils reshape2 reticulate rlang rmarkdown ROCR Rtsne S4Vectors scater scDblFinder scds scMerge scran scRNAseq scuttle Seurat shiny shinyalert shinycssloaders shinyjs SingleCellExperiment SingleR SoupX SummarizedExperiment sva TENxPBMCData tibble TrajectoryUtils TSCAN tximport VAM withr yaml zellkonverter zinbwave]; }; - singscore = derive2 { name="singscore"; version="1.20.0"; sha256="1s1kyvkbfgwskf0hi4b44c2yx256rjp1yk9ijpld9qlm7z7pi67q"; depends=[Biobase BiocParallel edgeR ggplot2 ggrepel GSEABase magrittr matrixStats plotly plyr RColorBrewer reshape reshape2 S4Vectors SummarizedExperiment tidyr]; }; - sitadela = derive2 { name="sitadela"; version="1.8.0"; sha256="06yn6hp3c099qnnzvl09lbjpn2v0vardkcqrbryjpl2044i6wxvg"; depends=[Biobase BiocGenerics biomaRt Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rsamtools RSQLite rtracklayer S4Vectors]; }; - sitePath = derive2 { name="sitePath"; version="1.16.0"; sha256="0fqby5jh3j5pgdmnq5mr767r6cp2r40q9xf5y9qj2svkqlkwkgqw"; depends=[ape aplot ggplot2 ggrepel ggtree gridExtra RColorBrewer Rcpp seqinr tidytree]; }; - sizepower = derive2 { name="sizepower"; version="1.70.0"; sha256="0vb1s0vg7mspd3mp5jzzy9fzpiqc104xkdhmvry8rcmai5x138lg"; depends=[]; }; - skewr = derive2 { name="skewr"; version="1.32.0"; sha256="0dzqy02vhqqyhi34dbjy30yqjazd19wnb0q2829gwpxfqq286q0v"; depends=[IlluminaHumanMethylation450kmanifest methylumi minfi mixsmsn RColorBrewer S4Vectors wateRmelon]; }; - slalom = derive2 { name="slalom"; version="1.22.0"; sha256="1bwrcqd2d7x4sgx22yb1al2lwz9wjrhzqrwk6m2025s8sl0ha24j"; depends=[BH ggplot2 GSEABase Rcpp RcppArmadillo rsvd SingleCellExperiment SummarizedExperiment]; }; - slingshot = derive2 { name="slingshot"; version="2.8.0"; sha256="1xr17rg8nfpcvdwa19qrcaqffkz048l5lkqlm6gw0abm8bg2k8x7"; depends=[igraph matrixStats princurve S4Vectors SingleCellExperiment SummarizedExperiment TrajectoryUtils]; }; - snapCGH = derive2 { name="snapCGH"; version="1.70.0"; sha256="0yz5q7w3lqv8ac6a764xlbm4hq3ncnngqng879qbpmzhgb4r155g"; depends=[aCGH cluster DNAcopy GLAD limma tilingArray]; }; - snapcount = derive2 { name="snapcount"; version="1.12.0"; sha256="026f5vsh5hqjf8lqwfvx6qnif1f915ivvr4imjdmqqnk74q2skk8"; depends=[assertthat data_table GenomicRanges httr IRanges jsonlite magrittr Matrix purrr R6 rlang stringr SummarizedExperiment]; }; - snifter = derive2 { name="snifter"; version="1.10.0"; sha256="1j4wd8x3hbfn0jklhwm13d07g3al3madxhrapzikiph7kcjlr5g6"; depends=[assertthat basilisk irlba reticulate]; }; - snm = derive2 { name="snm"; version="1.48.0"; sha256="1phbkikl961kag0if39h9rrqnxn3dj3x3f4wcvig5b0k939kf5pc"; depends=[corpcor lme4]; }; - snpStats = derive2 { name="snpStats"; version="1.50.0"; sha256="1v2j2943apphs8i68ap9c8sxd4j5a04qda5scq4dqqkzqd0c5b6i"; depends=[BiocGenerics Matrix survival zlibbioc]; }; - soGGi = derive2 { name="soGGi"; version="1.32.0"; sha256="1q84di6ddv1yyrhmjgjngn01vp7rgx3n6d6s8y9yglg9wi8133id"; depends=[BiocGenerics BiocParallel Biostrings chipseq GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges preprocessCore reshape2 Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; - spaSim = derive2 { name="spaSim"; version="1.2.1"; sha256="1kf37ni2i2paa5gml0nq9n7hj8mvc1rbr3gma4ymixlr7k2cvs89"; depends=[dplyr ggplot2 RANN SpatialExperiment spatstat_geom spatstat_random SummarizedExperiment]; }; - sparrow = derive2 { name="sparrow"; version="1.6.0"; sha256="1sd8qsx30wj7yafr1n6q46vncf8q0x0lf90p0vmhhx092dlanmnd"; depends=[babelgene BiocGenerics BiocParallel BiocSet checkmate circlize ComplexHeatmap data_table DelayedMatrixStats edgeR ggplot2 GSEABase irlba limma Matrix plotly viridis]; }; - sparseDOSSA = derive2 { name="sparseDOSSA"; version="1.24.0"; sha256="1xy9kd5a9vilwkgr4xw6lcdwgwykg7q7kildpfw4gqymd1frnjp6"; depends=[MASS MCMCpack optparse tmvtnorm]; }; - sparseMatrixStats = derive2 { name="sparseMatrixStats"; version="1.12.2"; sha256="00jalzg6yphi8ci4iid7x38jlsrvvdswrq7cqa7jybs26ayjldw1"; depends=[Matrix MatrixGenerics matrixStats Rcpp]; }; - sparsenetgls = derive2 { name="sparsenetgls"; version="1.18.0"; sha256="0gd7as4hsb8nfkqlk1kihwlm55rrdv36xl28zpxz7by6x9w92rjk"; depends=[glmnet huge MASS Matrix]; }; - spatialDE = derive2 { name="spatialDE"; version="1.6.0"; sha256="18fgyans15wnc63kzmv51yaxxd3vxjv3q9hgyrk9dz6kqx928mng"; depends=[basilisk checkmate ggplot2 ggrepel gridExtra Matrix reticulate scales SpatialExperiment SummarizedExperiment]; }; - spatialHeatmap = derive2 { name="spatialHeatmap"; version="2.6.2"; sha256="10gpil8l3q6pm76509z4jl25i72595yxgrcnkz8zd05dx4jjf8pr"; depends=[data_table dplyr edgeR genefilter ggplot2 ggplotify gplots gridExtra grImport igraph Matrix reshape2 rsvg S4Vectors scater scran scuttle shiny shinydashboard SingleCellExperiment spsComps SummarizedExperiment tibble xml2]; }; - spatzie = derive2 { name="spatzie"; version="1.6.0"; sha256="0c460pdfm4ncijhqj47j08bdhgiiic9aha5dwz2bpl1fk4p5l8x1"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicFeatures GenomicInteractions GenomicRanges ggplot2 IRanges MatrixGenerics matrixStats motifmatchr S4Vectors SummarizedExperiment TFBSTools]; }; - specL = derive2 { name="specL"; version="1.34.0"; sha256="00b4iwq43f3jr8a3g1a86wwvka20zm4jb2lwfv140n4qw3fg294k"; depends=[DBI protViz RSQLite seqinr]; }; - speckle = derive2 { name="speckle"; version="1.0.0"; sha256="09hf4kb9s6dcv0532q13ikbbknj4x5il0rxgc34d4k3sbf8pph5s"; depends=[edgeR ggplot2 limma Seurat SingleCellExperiment]; }; - spicyR = derive2 { name="spicyR"; version="1.12.2"; sha256="04x8gpl15j63k9qly9fsv0vlz9gki4kix2ncysz226qsxmzqpc0v"; depends=[BiocGenerics BiocParallel ClassifyR concaveman data_table dplyr ggforce ggplot2 IRanges lme4 lmerTest mgcv pheatmap rlang S4Vectors scam SingleCellExperiment SpatialExperiment spatstat_explore spatstat_geom SummarizedExperiment tidyr]; }; - spikeLI = derive2 { name="spikeLI"; version="2.60.0"; sha256="0mh24piab0gjcjk4lc3wji19lfx2mk0hch9p3wbqkahag6d4y785"; depends=[]; }; - spiky = derive2 { name="spiky"; version="1.6.0"; sha256="1lhv69z52pamzrp1pb9ccngdn4kkija4rb7g4vahp1wx7d5fbbja"; depends=[bamlss Biostrings BlandAltmanLeh BSgenome GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges Rsamtools S4Vectors scales]; }; - spkTools = derive2 { name="spkTools"; version="1.56.0"; sha256="14rqm15ym7vnzzqk2r4sa7fwa4a474y4i1jxzdy66aarf8nck57j"; depends=[Biobase gtools RColorBrewer]; }; - splatter = derive2 { name="splatter"; version="1.24.0"; sha256="1fmvm4n3xlib9bid8vxwsqlzfawsyv2mjvmic1g3zqz676x98gj9"; depends=[BiocGenerics BiocParallel checkmate crayon edgeR fitdistrplus locfit matrixStats rlang S4Vectors scuttle SingleCellExperiment SummarizedExperiment withr]; }; - splineTimeR = derive2 { name="splineTimeR"; version="1.28.0"; sha256="0qkxbpx2aih69qq4f8h14dqnmlpw77qiqg1xrpyc7lsvypqdfqn7"; depends=[Biobase FIs GeneNet GSEABase gtools igraph limma longitudinal]; }; - splots = derive2 { name="splots"; version="1.66.0"; sha256="01c48k6isaryyb47ypmvxwyc2hskfrwgr1bvrix40l9h00zwlvn3"; depends=[RColorBrewer]; }; - spqn = derive2 { name="spqn"; version="1.12.0"; sha256="0lfinhfiirfql48fsrzsizzk5i1ls4xd5fflrb05awaayn92iwsx"; depends=[BiocGenerics ggplot2 ggridges matrixStats SummarizedExperiment]; }; - ssPATHS = derive2 { name="ssPATHS"; version="1.14.0"; sha256="0absjg8d980gcmlc7bgdz7w4y2apyy9ma1wxb4w4bcal110wlqcs"; depends=[dml MESS ROCR SummarizedExperiment]; }; - sscore = derive2 { name="sscore"; version="1.72.0"; sha256="02y684iaryms7099k9idrvw0my52jj3d4hl949ai1jknaa19hmil"; depends=[affy affyio]; }; - sscu = derive2 { name="sscu"; version="2.30.0"; sha256="0ch78vb166cfgmwsvdihkhrmalpd68qanyyws79nnlp1ibrjxzgp"; depends=[BiocGenerics Biostrings seqinr]; }; - ssize = derive2 { name="ssize"; version="1.74.0"; sha256="184qni9n8birdsrwb6mvsaj0jiivnbchcyzb6f8h4aw45hzz881i"; depends=[gdata xtable]; }; - ssrch = derive2 { name="ssrch"; version="1.16.0"; sha256="113jhlcvjkh3kqam9z1dvkf4x7s6mcm0h0w7ajs0krgn4cxyq9r6"; depends=[DT shiny]; }; - ssviz = derive2 { name="ssviz"; version="1.34.0"; sha256="0jkq07j74i9317ird6qmiy1lq7xhsv808pqnsah9xfqaf0p22kkm"; depends=[Biostrings ggplot2 RColorBrewer reshape Rsamtools]; }; - stJoincount = derive2 { name="stJoincount"; version="1.2.0"; sha256="0rqmbi7kjmmi7mza8cl4xj63vrj633yrdj1fl4fl9g4dmfxqjhkx"; depends=[dplyr ggplot2 magrittr pheatmap raster Seurat sp SpatialExperiment spdep SummarizedExperiment]; }; - staRank = derive2 { name="staRank"; version="1.42.0"; sha256="1jbgx9p681765dw74jdvdwn85viicdgd3gfpwbp37dn256wh2hl9"; depends=[cellHTS2]; }; - stageR = derive2 { name="stageR"; version="1.22.0"; sha256="0advih0g2g5w8bx9f21chz8a66f4v84qn3p5skxi084pp142v5ms"; depends=[SummarizedExperiment]; }; - standR = derive2 { name="standR"; version="1.4.2"; sha256="194r0l9p78pn9rvcm9fgwi7kwqjrmrzcqha1d37d6jrdwk96b8p7"; depends=[Biobase BiocGenerics dplyr edgeR ggalluvial ggplot2 limma mclustcomp patchwork readr rlang ruv RUVSeq S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment tibble tidyr]; }; - statTarget = derive2 { name="statTarget"; version="1.30.0"; sha256="02jqbxx9mk664s36pbq97lmppk8rcplsbd94zlmdwip2sknf8ix4"; depends=[impute pdist pls plyr randomForest ROC rrcov]; }; - stepNorm = derive2 { name="stepNorm"; version="1.72.0"; sha256="1j915bnmq1fsjdgn0rrlxmqvmy1cafyp5sc2gal81qrv366qy1ri"; depends=[marray MASS]; }; - strandCheckR = derive2 { name="strandCheckR"; version="1.18.0"; sha256="0gsnhx7vfi3p665fwyai8byz984j7ai6k8d7ilbpxi5f3v1qkjrk"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges magrittr reshape2 rmarkdown Rsamtools S4Vectors stringr TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - struct = derive2 { name="struct"; version="1.12.0"; sha256="1vf92g3lhq3ciy6sr9vwx4xzqpzf28np1nfc2f63d5dwcq24l8a9"; depends=[knitr ontologyIndex rols S4Vectors SummarizedExperiment]; }; - structToolbox = derive2 { name="structToolbox"; version="1.12.3"; sha256="0g0glzijv4vrpics14fpj2gs5f8la2rg6n5a71jyh0dzyycj87b5"; depends=[ggplot2 ggthemes gridExtra scales sp struct]; }; - subSeq = derive2 { name="subSeq"; version="1.30.0"; sha256="1p035a53129ax84cjyv1xx3gcq4940mr4ppakczqdbc8c3ch4d08"; depends=[Biobase data_table digest dplyr ggplot2 magrittr qvalue tidyr]; }; - supersigs = derive2 { name="supersigs"; version="1.8.0"; sha256="0ifj0558rcf3v6rwpl2i0bidbg1gv3q8calpn49s1jqayn57hiik"; depends=[assertthat Biostrings caret dplyr rlang rsample SummarizedExperiment tidyr]; }; - supraHex = derive2 { name="supraHex"; version="1.38.0"; sha256="1z216mrm59sgxf7kspscf26ic3qlrvpwjs013z10vsxrjwypkmw7"; depends=[ape dplyr hexbin igraph magrittr MASS purrr readr stringr tibble tidyr]; }; - surfaltr = derive2 { name="surfaltr"; version="1.6.0"; sha256="01i0siz28cvn00lsgb68wrcang6991xgx1h5f09vs9fz0p0qbiik"; depends=[biomaRt Biostrings dplyr ggplot2 httr msa protr readr seqinr stringr testthat xml2]; }; - survcomp = derive2 { name="survcomp"; version="1.50.0"; sha256="1va0ijx3qk3rjhzaflygfwlzn5a670y833qly8in8p5r3al9bdj6"; depends=[bootstrap ipred KernSmooth prodlim rmeta SuppDists survival survivalROC]; }; - survtype = derive2 { name="survtype"; version="1.16.0"; sha256="1flin23qc0fm4hhchdi8ca6bbzn6n9n5i0bq18griynv5zvg72yg"; depends=[clustvarsel pheatmap SummarizedExperiment survival survminer]; }; - sva = derive2 { name="sva"; version="3.48.0"; sha256="1f6ia57fn2sn7c2zdfswvj9kx8xayssrgf5q6hrr9nrxc0jq19g3"; depends=[BiocParallel edgeR genefilter limma matrixStats mgcv]; }; - svaNUMT = derive2 { name="svaNUMT"; version="1.6.0"; sha256="0nc0k2g75hqdgg9mgvyq72jw70hnvnwy9frrrgwl9f0a370pf957"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges rlang rtracklayer S4Vectors stringr StructuralVariantAnnotation VariantAnnotation]; }; - svaRetro = derive2 { name="svaRetro"; version="1.6.0"; sha256="0ynpsmq3gxqz9jr97cmg93szanh3pk4sj6ydd15lgv9an6y7bpcq"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges rlang rtracklayer S4Vectors stringr StructuralVariantAnnotation VariantAnnotation]; }; - swfdr = derive2 { name="swfdr"; version="1.26.0"; sha256="0rzdmf4viyl9q3ma9awkk2q515i615fik15rssqgzxwcxigzdvnq"; depends=[]; }; - switchBox = derive2 { name="switchBox"; version="1.36.0"; sha256="11rrl6kdccfj5f7hcg2a3ba5xglldrj7jxghwcp9gw0bp2l25734"; depends=[gplots pROC]; }; - switchde = derive2 { name="switchde"; version="1.26.0"; sha256="1p7h4c9vk1gldw5r2i2g422frdsr3l8wzwn4jd5wkn9gdhrxhywa"; depends=[dplyr ggplot2 SingleCellExperiment SummarizedExperiment]; }; - synapsis = derive2 { name="synapsis"; version="1.6.0"; sha256="1c34451qf8i81y6jq5qda5008w0sj89dbxy32fsx6pjqa5sg57fr"; depends=[EBImage]; }; - synapter = derive2 { name="synapter"; version="2.24.0"; sha256="0ial1wkyzbxnpail13bfnf436hyc6isn70vfsabx08xjbk7g5dyw"; depends=[Biobase Biostrings cleaver lattice MSnbase multtest qvalue RColorBrewer readr rmarkdown]; }; - synergyfinder = derive2 { name="synergyfinder"; version="3.8.2"; sha256="0nppm9zisijvk6q8n1hzrixwl59c5v7z4ciffhll7jssjxb9n4l7"; depends=[dplyr drc furrr future ggforce ggplot2 ggrepel gstat kriging lattice magrittr metR mice nleqslv pbapply plotly purrr reshape2 sp SpatialExtremes stringr tidyr tidyverse vegan]; }; - synlet = derive2 { name="synlet"; version="2.0.0"; sha256="1fx91chj1nmj1nq2754z7i3qzwkz48sgz6y2xzp4r799l1zb86zx"; depends=[data_table ggplot2 magrittr patchwork RankProd RColorBrewer]; }; - syntenet = derive2 { name="syntenet"; version="1.2.4"; sha256="0bm0fjyy7m0fhkv2dl806hslska609h8bp1qlnlqzqrbm7akmjym"; depends=[BiocParallel Biostrings GenomicRanges ggnetwork ggplot2 igraph intergraph networkD3 pheatmap RColorBrewer Rcpp rlang rtracklayer testthat]; }; - systemPipeR = derive2 { name="systemPipeR"; version="2.6.3"; sha256="068rikfq32awhvj0abl30bghv5k2z4zlfkbxpmsdapxhmdzhgnba"; depends=[BiocGenerics Biostrings crayon GenomicRanges ggplot2 htmlwidgets magrittr Rsamtools S4Vectors ShortRead stringr SummarizedExperiment yaml]; }; - systemPipeShiny = derive2 { name="systemPipeShiny"; version="1.10.0"; sha256="0psnx7k59yi474fpb8c7q0cmvzrj0a498hpkw9xngi21j7967xl2"; depends=[assertthat bsplus crayon dplyr drawer DT ggplot2 glue htmltools magrittr openssl plotly R6 rlang RSQLite rstudioapi shiny shinyAce shinydashboard shinydashboardPlus shinyFiles shinyjqui shinyjs shinytoastr shinyWidgets spsComps spsUtil stringr styler tibble vroom yaml]; }; - systemPipeTools = derive2 { name="systemPipeTools"; version="1.8.0"; sha256="0i30ikhs2gdxnw1x05c878rdnpc2h213d9bf61j3ivvsmch45fnx"; depends=[ape DESeq2 dplyr DT GGally ggplot2 ggrepel ggtree glmpca magrittr pheatmap plotly Rtsne SummarizedExperiment tibble]; }; - tLOH = derive2 { name="tLOH"; version="1.8.0"; sha256="0pg5f0f45s5wig99nk4ih212bwavhdyl948caykphwy288n8j27f"; depends=[bestNormalize data_table depmixS4 dplyr GenomicRanges ggplot2 MatrixGenerics naniar purrr scales stringr VariantAnnotation]; }; - tRNA = derive2 { name="tRNA"; version="1.18.0"; sha256="0fwspbb1z453maf6rxg6il73y6ldwkh6qrfydcvpdqjwlfq76f3p"; depends=[BiocGenerics Biostrings GenomicRanges ggplot2 IRanges Modstrings S4Vectors scales stringr Structstrings XVector]; }; - tRNAdbImport = derive2 { name="tRNAdbImport"; version="1.18.0"; sha256="12bsmdjvp8rak9nb6p0y39gnyxswaxg9czc6kkwz7mv5y2l2q0by"; depends=[BiocGenerics Biostrings GenomicRanges httr IRanges Modstrings S4Vectors stringr Structstrings tRNA xml2]; }; - tRNAscanImport = derive2 { name="tRNAscanImport"; version="1.20.0"; sha256="188vi9023hr2923hy0cxgb5am50wm8bzmakb6b2rwwahsl1mkgv3"; depends=[BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Rsamtools rtracklayer S4Vectors stringr Structstrings tRNA XVector]; }; - tRanslatome = derive2 { name="tRanslatome"; version="1.38.0"; sha256="1j7046gwlk1wlmqcmn4423pw3gsnjp8h3jbzjpqhnqh9k3v88ynj"; depends=[anota Biobase DESeq2 edgeR GOSemSim gplots Heatplus limma org_Hs_eg_db plotrix RankProd topGO]; }; - tanggle = derive2 { name="tanggle"; version="1.6.0"; sha256="0ahcmgsfgcq2a59n6g8q2vnmnq6ycibgzghlxxb2vi3awixy1h2i"; depends=[ape ggplot2 ggtree phangorn]; }; - target = derive2 { name="target"; version="1.14.0"; sha256="1qmmddryy19vb1jjliliks2hb0vv23svrw2z9qfdm4fxwwwgc6w5"; depends=[BiocGenerics GenomicRanges IRanges matrixStats shiny]; }; - tenXplore = derive2 { name="tenXplore"; version="1.22.0"; sha256="07vfx5yvgd749j111lbw0g2x9rdhs6h5mb6qf46j1k3r93hckax3"; depends=[AnnotationDbi matrixStats ontoProc org_Mm_eg_db restfulSE shiny SummarizedExperiment]; }; - ternarynet = derive2 { name="ternarynet"; version="1.44.0"; sha256="0rqsgpi559ihw7npf866bvxrzzvpgrjanzn0hzcxjgj95xvd39xn"; depends=[BiocParallel igraph]; }; - terraTCGAdata = derive2 { name="terraTCGAdata"; version="1.4.0"; sha256="1g8zbdw2ba901cclhgh758l541q3n4r1xz2jpfdib476grxvlmnv"; depends=[AnVIL BiocFileCache dplyr GenomicRanges MultiAssayExperiment RaggedExperiment readr S4Vectors TCGAutils tidyr]; }; - tidySingleCellExperiment = derive2 { name="tidySingleCellExperiment"; version="1.10.0"; sha256="0wvaghfnis93gmp3irc82sllh9qrfnly3ba21cvv3w70sysfxif1"; depends=[cli dplyr ellipsis fansi ggplot2 lifecycle magrittr Matrix pillar plotly purrr rlang S4Vectors SingleCellExperiment stringr SummarizedExperiment tibble tidyr tidyselect ttservice vctrs]; }; - tidySummarizedExperiment = derive2 { name="tidySummarizedExperiment"; version="1.10.0"; sha256="192rvxd9lbwpddwy28b4021ihs1hxbfra376k6fdysjc7h34iilk"; depends=[cli dplyr ellipsis fansi ggplot2 lifecycle magrittr pillar plotly purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr tidyselect vctrs]; }; - tidybulk = derive2 { name="tidybulk"; version="1.12.0"; sha256="1fpqd7bhsvasfraclld5f7prxzpp74p89yyb38v3yjdk38by87ym"; depends=[crayon dplyr GenomicRanges lifecycle magrittr preprocessCore purrr readr rlang S4Vectors scales stringi stringr SummarizedExperiment tibble tidyr tidyselect]; }; - tigre = derive2 { name="tigre"; version="1.54.0"; sha256="15zfnn89g3i1rc1i31cgg355na1srnazmg6km2cwpa8dswna6kzi"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI gplots RSQLite]; }; - tilingArray = derive2 { name="tilingArray"; version="1.78.0"; sha256="0wj3wb4x9s0v189p20rlwghsx82x314yyhhsnfmrl266qb1ambrn"; depends=[affy Biobase genefilter pixmap RColorBrewer strucchange vsn]; }; - timeOmics = derive2 { name="timeOmics"; version="1.12.0"; sha256="1gl00h8b9l90fgpa13fhbfaxgycni8x8w3z4qjyr69rfhfap1m7k"; depends=[dplyr ggplot2 ggrepel lmtest magrittr mixOmics plyr purrr stringr tibble tidyr]; }; - timecourse = derive2 { name="timecourse"; version="1.72.0"; sha256="1knflxz1j2pmbxdbxygzrl76rlmj738rvlsp1i2f3jzqrnqdc1hs"; depends=[Biobase limma marray MASS]; }; - timescape = derive2 { name="timescape"; version="1.24.0"; sha256="09jcq1iiq671alznik87a1mhnnrhcqx274vnlz2hkp6xkwvd8a4w"; depends=[dplyr gtools htmlwidgets jsonlite stringr]; }; - tkWidgets = derive2 { name="tkWidgets"; version="1.78.0"; sha256="1xp0gdfrhhfzfww4ig3y90f7334y24rhzrmlxmm4wav8slvcran2"; depends=[DynDoc widgetTools]; }; - tomoda = derive2 { name="tomoda"; version="1.10.0"; sha256="1f7rgw6zm497v32mynhhl1ld2rbzqjlnqdi7vd22wb4rcy09vg88"; depends=[ggplot2 ggrepel RColorBrewer reshape2 Rtsne SummarizedExperiment umap]; }; - tomoseqr = derive2 { name="tomoseqr"; version="1.4.0"; sha256="060wgg4fympzx5vg452cpb8wdbwvczyx80dx5apgvf298dh7xnjd"; depends=[animation BiocFileCache dplyr ggplot2 plotly purrr readr shiny stringr tibble]; }; - topGO = derive2 { name="topGO"; version="2.52.0"; sha256="0avjjvih387qhw8n4vjz4jq66q7sicgacsw53b85lq2c6ppib662"; depends=[AnnotationDbi Biobase BiocGenerics DBI GO_db graph lattice matrixStats SparseM]; }; - topconfects = derive2 { name="topconfects"; version="1.16.0"; sha256="1i37zbr8azfvvrrk95q7y2m69njgshy3adlkvvps7gyhn2jvlvnf"; depends=[assertthat ggplot2]; }; - topdownr = derive2 { name="topdownr"; version="1.22.0"; sha256="1z1inzbqv31g1by8p81x3bkn8fdx8k7hfkwmz1m8dhblz9xqk644"; depends=[Biobase BiocGenerics Biostrings ggplot2 Matrix MSnbase mzR ProtGenerics S4Vectors]; }; - trackViewer = derive2 { name="trackViewer"; version="1.36.2"; sha256="1ngfpd308y8i3vgv07cggk2azs64lsyyc9zfi3pz0gapr33ha6a1"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph grImport Gviz htmlwidgets InteractionSet IRanges plotrix Rgraphviz rhdf5 Rsamtools rtracklayer S4Vectors scales strawr]; }; - tracktables = derive2 { name="tracktables"; version="1.34.0"; sha256="0hpvk5l7nv9rsdmfv3kzc1jx5rjdqyv9n7k6lhvzkd4b9q2d25h6"; depends=[GenomicRanges IRanges RColorBrewer Rsamtools stringr tractor_base XML XVector]; }; - tradeSeq = derive2 { name="tradeSeq"; version="1.14.0"; sha256="14b90x9h34mhbc4sdpzkygrrswf84pi1ddwpzxhvlvr9gs443xqs"; depends=[Biobase BiocParallel edgeR ggplot2 igraph magrittr MASS Matrix matrixStats mgcv pbapply princurve RColorBrewer S4Vectors SingleCellExperiment slingshot SummarizedExperiment tibble TrajectoryUtils viridis]; }; - transcriptR = derive2 { name="transcriptR"; version="1.28.0"; sha256="0i38zs33drzk9szy2mdfs9ff9c3ccjgiyyynrrsinrx0szc8l22r"; depends=[BiocGenerics caret chipseq e1071 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges pROC reshape2 Rsamtools rtracklayer S4Vectors]; }; - transcriptogramer = derive2 { name="transcriptogramer"; version="1.22.0"; sha256="1kvs2idmx6ikpgmmb2pbd7g2b50bh020vq8c8ghwk7128r35qsc6"; depends=[biomaRt data_table doSNOW foreach ggplot2 igraph limma progress RedeR snow tidyr topGO]; }; - transformGamPoi = derive2 { name="transformGamPoi"; version="1.6.0"; sha256="08f03bad2zpiqxw7mkbg7jggbk20zn84645k7z0qvdhw4rk59h0h"; depends=[DelayedArray glmGamPoi HDF5Array Matrix MatrixGenerics Rcpp SummarizedExperiment]; }; - transite = derive2 { name="transite"; version="1.18.0"; sha256="08s376j53hb9079n5cwz1qs0pmsz3qx9y3nq3jys0xk381z1gnr8"; depends=[BiocGenerics Biostrings dplyr GenomicRanges ggplot2 ggseqlogo gridExtra Rcpp scales TFMPvalue]; }; - transomics2cytoscape = derive2 { name="transomics2cytoscape"; version="1.10.0"; sha256="1zbcv81d6qhbcw8zz8s3pd3grr39dg413x95k46q3491www84i5q"; depends=[dplyr KEGGREST purrr RCy3 tibble]; }; - traseR = derive2 { name="traseR"; version="1.30.0"; sha256="07l0aqkkgma10xhhihmiyqj7mb62jrmb4a6rw2gh91yj1dwqlzc9"; depends=[BSgenome_Hsapiens_UCSC_hg19 GenomicRanges IRanges]; }; - traviz = derive2 { name="traviz"; version="1.6.0"; sha256="1lsczylj86w2cq2hcknswzqdp4b298gcv6ljzdr9c8ir7ks2j55k"; depends=[Biobase ggplot2 mgcv princurve RColorBrewer rgl SingleCellExperiment slingshot SummarizedExperiment viridis]; }; - treeio = derive2 { name="treeio"; version="1.24.3"; sha256="0shm0mdqvsk5qipdqbz3251kks6ii1vpx1pph0ms271nzs6fcvif"; depends=[ape cli dplyr jsonlite magrittr rlang tibble tidytree]; }; - treekoR = derive2 { name="treekoR"; version="1.8.0"; sha256="1gsvs30n67vf3fqbm0d6zg5dxj2m1bi81gnm8vjg39413cqi63pc"; depends=[ape data_table diffcyt dplyr edgeR ggiraph ggplot2 ggtree hopach lme4 multcomp patchwork SingleCellExperiment tidyr]; }; - trena = derive2 { name="trena"; version="1.22.2"; sha256="1xjhqm2g53kgcnnqhs5l3vn525h7amaz4hvsskjp5zb0gkfpiwh1"; depends=[AnnotationDbi biomaRt Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 DBI GenomicRanges glmnet lassopv MotifDb org_Hs_eg_db randomForest RMySQL RPostgreSQL RSQLite SNPlocs_Hsapiens_dbSNP150_GRCh38 WGCNA xgboost]; }; - tricycle = derive2 { name="tricycle"; version="1.8.0"; sha256="1ags05rhi431jsk0kqs7rmxj853mf5c0ibfqknbwy2wmbz8p1vq6"; depends=[AnnotationDbi circular dplyr GenomicRanges ggnewscale ggplot2 IRanges RColorBrewer S4Vectors scater scattermore SingleCellExperiment SummarizedExperiment]; }; - trigger = derive2 { name="trigger"; version="1.46.0"; sha256="0wviwgr1f8549rwg4hd80c1jri79fqwiylgkablx8h7izq5lk1fc"; depends=[corpcor qtl qvalue sva]; }; - trio = derive2 { name="trio"; version="3.38.0"; sha256="1jzsdwpc4wqvdqmqai7lc0hyvl7rq32442iihfhx31yhr78gqn1g"; depends=[LogicReg siggenes survival]; }; - triplex = derive2 { name="triplex"; version="1.40.0"; sha256="1gysg24h68k0l0q7f449qp5k9dn5q3c4m33jg0ff4qj98jrvprb7"; depends=[Biostrings GenomicRanges IRanges S4Vectors XVector]; }; - tripr = derive2 { name="tripr"; version="1.6.0"; sha256="0n26zffp64w7ccpv6hcng8fagy3zd7czv0fz94phz8gvl48rpbwd"; depends=[config data_table dplyr DT golem gridExtra plot3D plotly plyr RColorBrewer shiny shinyBS shinyFiles shinyjs stringdist stringr]; }; - tscR = derive2 { name="tscR"; version="1.11.0"; sha256="19jpmyb6dly7l0418c1z0dlb936wjh6nwkb0mvk13ym19qgv1my7"; depends=[class cluster dplyr dtw GenomicRanges ggplot2 gridExtra IRanges knitr latex2exp prettydoc RColorBrewer rmarkdown S4Vectors SummarizedExperiment]; }; - ttgsea = derive2 { name="ttgsea"; version="1.8.0"; sha256="0r34f1k3f972pb7x1a376ysscazspdgnyid3vc41rimgvl9p03rg"; depends=[data_table DiagrammeR keras purrr stopwords text2vec textstem tm tokenizers]; }; - tweeDEseq = derive2 { name="tweeDEseq"; version="1.46.2"; sha256="073w9qhywhlqfnq6m5k94rhblliziydgdin7gfiy7y007n5j74xd"; depends=[cqn edgeR limma MASS Rcpp]; }; - twilight = derive2 { name="twilight"; version="1.76.0"; sha256="0xhwykvb9rgsj13ivfjlal4ffhms9sglh9h61h8448r9g58kgibz"; depends=[Biobase]; }; - twoddpcr = derive2 { name="twoddpcr"; version="1.24.0"; sha256="0klikcpvpd7dm6ssyv08vd1iv5hhas5a2b7wjkapn2p2j43b214n"; depends=[class ggplot2 hexbin RColorBrewer S4Vectors scales shiny]; }; - txcutr = derive2 { name="txcutr"; version="1.6.0"; sha256="1xbpyvcs1r7z5h0khl3avz3rnc8422fsyqvfpiwhy45icqwvlpbq"; depends=[AnnotationDbi BiocGenerics BiocParallel Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer S4Vectors]; }; - tximeta = derive2 { name="tximeta"; version="1.18.3"; sha256="01s8x8a3rb0a5i599pxc5miz84ssvh10b4vha79nmbhkqccffvml"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings ensembldb GenomeInfoDb GenomicFeatures GenomicRanges IRanges jsonlite Matrix S4Vectors SummarizedExperiment tibble tximport]; }; - tximport = derive2 { name="tximport"; version="1.28.0"; sha256="0km1vfn4jcp05jk5srrqanjngq6ghh5im6h1c424b926g9s7w7k1"; depends=[]; }; - uSORT = derive2 { name="uSORT"; version="1.26.0"; sha256="0mqf481niq5md6ld0mki4iif4vhpnjk57896vaqvjzwjdhnw8n2b"; depends=[Biobase BiocGenerics cluster fpc gplots igraph Matrix monocle plyr RANN RSpectra VGAM]; }; - uncoverappLib = derive2 { name="uncoverappLib"; version="1.10.0"; sha256="063iblr2mal7wsci52zhd51hpjmxm5jbz08f3i2yxc6z72qi97nd"; depends=[BiocFileCache condformat DT EnsDb_Hsapiens_v75 EnsDb_Hsapiens_v86 GenomicRanges Gviz Homo_sapiens markdown openxlsx org_Hs_eg_db OrganismDbi processx rappdirs rlist Rsamtools S4Vectors shiny shinyBS shinycssloaders shinyjs shinyWidgets stringr TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - unifiedWMWqPCR = derive2 { name="unifiedWMWqPCR"; version="1.36.0"; sha256="1gza678sd5m2rbki0l5hniki6gmds2cljkmywmk5v5m9swh9azq7"; depends=[BiocGenerics HTqPCR]; }; - universalmotif = derive2 { name="universalmotif"; version="1.18.1"; sha256="0v1085dl16a3494f1fxc9rk1ffz3si89mdwbmnnczyhj5p13pfx8"; depends=[BiocGenerics Biostrings ggplot2 IRanges MASS MatrixGenerics Rcpp RcppThread rlang S4Vectors yaml]; }; - updateObject = derive2 { name="updateObject"; version="1.4.0"; sha256="1d9pdacnvhz3dknzvb05hylvsy0fasr6fk6k69aa5q6wlm6p8w7r"; depends=[BiocGenerics digest S4Vectors]; }; - variancePartition = derive2 { name="variancePartition"; version="1.30.2"; sha256="17jssd327l0miw52iadag2dbk8w4mhv2vwjpzdw89p8gww47bmbv"; depends=[aod Biobase BiocParallel doParallel foreach ggplot2 gplots iterators limma lme4 lmerTest MASS Matrix pbkrtest progress Rdpack remaCor reshape2 RhpcBLASctl rlang scales]; }; - vbmp = derive2 { name="vbmp"; version="1.68.0"; sha256="08xjyabaircbd9wscrkhb3il66s28z5qsb7rk1978pj41acpk1bv"; depends=[]; }; - velociraptor = derive2 { name="velociraptor"; version="1.10.0"; sha256="0rqrz71yjwf51my13gp09fdidrx10bchkgdcjx2ma3pzw0xhhvry"; depends=[basilisk BiocGenerics BiocParallel BiocSingular DelayedArray Matrix reticulate S4Vectors scuttle SingleCellExperiment SummarizedExperiment zellkonverter]; }; - veloviz = derive2 { name="veloviz"; version="1.6.0"; sha256="1bq54xaqw3h1556k2sx3hx66drpinjg6fcgidnb94bjmfr1jyh4m"; depends=[igraph Matrix mgcv Rcpp RSpectra]; }; - vidger = derive2 { name="vidger"; version="1.20.0"; sha256="0swis799xk389dnmc3kbxpfxg0p7l1dq3xnr9ic7yvsca2rgx6na"; depends=[Biobase DESeq2 edgeR GGally ggplot2 ggrepel knitr RColorBrewer rmarkdown scales SummarizedExperiment tidyr]; }; - viper = derive2 { name="viper"; version="1.34.0"; sha256="01flc6k6l1fa4zqxfvq5idclw2wsm739pj7kh5f4ismiaz8jw0dp"; depends=[Biobase e1071 KernSmooth mixtools]; }; - vissE = derive2 { name="vissE"; version="1.8.0"; sha256="0xfsh4f5gsgzd53pnmqfp06p2sym4q2pid7y0i7bb28p71nr1pqq"; depends=[ggforce ggplot2 ggraph ggrepel ggwordcloud GSEABase igraph msigdb plyr RColorBrewer reshape2 scales scico textstem tidygraph tm]; }; - vsclust = derive2 { name="vsclust"; version="1.2.0"; sha256="08pqvbsa37jpdyrb85w6ynv66qcprpi69ki1nxi76dg5nv1a42r8"; depends=[limma matrixStats MultiAssayExperiment qvalue Rcpp shiny]; }; - vsn = derive2 { name="vsn"; version="3.68.0"; sha256="0i6c0wyhj0gcq0mw13zyk60cza2baq4yrj1n2dzqgsqkmhm5lfla"; depends=[affy Biobase ggplot2 lattice limma]; }; - vtpnet = derive2 { name="vtpnet"; version="0.40.0"; sha256="04h648sripvywxx0mz4bv79g2j3n053ascvgmjq5v35y0ijcxnx4"; depends=[doParallel foreach GenomicRanges graph gwascat]; }; - vulcan = derive2 { name="vulcan"; version="1.22.0"; sha256="0dhhrjb2vjplphpbxwz0bkcjcdf20qj7mlj21ppp5w4xsy6bvbb5"; depends=[Biobase caTools ChIPpeakAnno csaw DESeq2 DiffBind GenomicRanges gplots locfit S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene viper wordcloud zoo]; }; - waddR = derive2 { name="waddR"; version="1.14.0"; sha256="1j3b1ml782qva44m66pg5wfb4b2f39w8r9wihx4djh1sm3q8kqpl"; depends=[arm BiocFileCache BiocParallel eva Rcpp RcppArmadillo SingleCellExperiment]; }; - wateRmelon = derive2 { name="wateRmelon"; version="2.6.0"; sha256="0qslh2xhhyaf0nsgcqav6qgh05n8kp0s6p1zggc02iid30i1ibrj"; depends=[Biobase IlluminaHumanMethylation450kanno_ilmn12_hg19 illuminaio limma lumi matrixStats methylumi ROC]; }; - wavClusteR = derive2 { name="wavClusteR"; version="2.34.0"; sha256="0491x3m0015g83m6a7pkc4783768clgykhlcmd2xr6cgrhih10g2"; depends=[BiocGenerics Biostrings foreach GenomicFeatures GenomicRanges ggplot2 Hmisc IRanges mclust Rsamtools rtracklayer S4Vectors seqinr stringr]; }; - weaver = derive2 { name="weaver"; version="1.66.0"; sha256="1c51353nl54h5gf2srfvqx1ybdf1s9j8wsicmilz8jrvyq8dca13"; depends=[codetools digest]; }; - webbioc = derive2 { name="webbioc"; version="1.72.0"; sha256="0z2sixzs0rwdwdhxs5mqzghgiw4g64l8p9ag5lw289bzs4c4kqnd"; depends=[affy annaffy Biobase BiocManager gcrma multtest qvalue vsn]; }; - weitrix = derive2 { name="weitrix"; version="1.12.0"; sha256="1n7bzsbi8zz75vklj61qqc8l01qcvni7q9l3n2mmjp48iwrh2l94"; depends=[assertthat BiocGenerics BiocParallel Ckmeans_1d_dp DelayedArray DelayedMatrixStats dplyr ggplot2 glm2 limma purrr reshape2 RhpcBLASctl rlang S4Vectors scales SummarizedExperiment topconfects]; }; - widgetTools = derive2 { name="widgetTools"; version="1.78.0"; sha256="03bvh2jk97jj40z35q5n1is2wxrs4dggw08ndyywy4pzx1diqdc4"; depends=[]; }; - wiggleplotr = derive2 { name="wiggleplotr"; version="1.24.0"; sha256="15gbs10bi1alxxbxaj4h3hzfgck4nxygy896y34x81w1rn7in3vp"; depends=[assertthat cowplot dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges purrr rtracklayer S4Vectors]; }; - wpm = derive2 { name="wpm"; version="1.10.0"; sha256="0zyifhqxssbwmmznsyxmjpnswklpdvp6f770wf08qja0lndj5pgk"; depends=[Biobase cli config dplyr DT ggplot2 golem logging RColorBrewer rlang shiny shinycustomloader shinydashboard shinyWidgets stringr SummarizedExperiment]; }; - wppi = derive2 { name="wppi"; version="1.8.0"; sha256="06y4pq8msjzwrw1jgyj9yskgpfhvcz54qcsv0h14bakhyrwk00pg"; depends=[dplyr igraph logger magrittr Matrix OmnipathR progress purrr RCurl rlang tibble tidyr]; }; - xcms = derive2 { name="xcms"; version="3.22.0"; sha256="112g2lpi074cr8g09cqwjbcwv9aw4djr7ashxpnxjycd3ayc0j3v"; depends=[Biobase BiocGenerics BiocParallel IRanges lattice MassSpecWavelet MsCoreUtils MsFeatures MSnbase multtest mzR plyr ProtGenerics RANN RColorBrewer robustbase S4Vectors SummarizedExperiment]; }; - xcore = derive2 { name="xcore"; version="1.4.0"; sha256="0bxk4cmr36yz7kpnl3lbykq2qj6wfw0sk3h88b1ccrd2y58b7kl3"; depends=[DelayedArray edgeR foreach GenomicRanges glmnet IRanges iterators magrittr Matrix MultiAssayExperiment S4Vectors]; }; - xmapbridge = derive2 { name="xmapbridge"; version="1.58.0"; sha256="09pskmhjymqvhk26mk5yy1k195v536a2qp4k6xdd67xhf5ag260i"; depends=[]; }; - yamss = derive2 { name="yamss"; version="1.26.0"; sha256="0kjlp62s2393jdwp0crizsgp4iqagbgnd3hdl9vpbr9qrjxg4s7m"; depends=[BiocGenerics data_table EBImage IRanges limma Matrix mzR S4Vectors SummarizedExperiment]; }; - yarn = derive2 { name="yarn"; version="1.26.0"; sha256="0ddfl4jp0n8sb665hcpsij959fl28rj22n1h61wp2374kpc0fwfj"; depends=[Biobase biomaRt downloader edgeR gplots limma matrixStats preprocessCore quantro RColorBrewer readr]; }; - zFPKM = derive2 { name="zFPKM"; version="1.22.0"; sha256="1fkzyq282xafyapgi5xi1c2dmfkyikqvf622pycjs80fas38044h"; depends=[checkmate dplyr ggplot2 SummarizedExperiment tidyr]; }; - zellkonverter = derive2 { name="zellkonverter"; version="1.10.1"; sha256="1p89i2dfwcgrdchdnxrywp3jjjn5jjs5bisrx5kav26yh2pyx1wk"; depends=[basilisk cli DelayedArray Matrix reticulate S4Vectors SingleCellExperiment SummarizedExperiment]; }; - zenith = derive2 { name="zenith"; version="1.2.0"; sha256="0c2lq0gql1022r2zr5j87bkhc1q3aw0cvr3bq4f6rp743iy7dbrs"; depends=[EnrichmentBrowser ggplot2 GSEABase limma msigdbr progress Rdpack reshape2 Rfast tidyr variancePartition]; }; - zinbwave = derive2 { name="zinbwave"; version="1.22.0"; sha256="1bmxbzpgmwama42a3vi1n0sic166v5zs0kl9mhmrh0rrx0nv303k"; depends=[BiocParallel edgeR genefilter Matrix SingleCellExperiment softImpute SummarizedExperiment]; }; - zlibbioc = derive2 { name="zlibbioc"; version="1.46.0"; sha256="0x3d5kihckqnfjkc7dxk6mc194vwwr03jfjx2qh15g5494gfmm53"; depends=[]; }; + ABSSeq = derive2 { name="ABSSeq"; version="1.56.0"; sha256="0y8j66yargvipwxg2ffcs62idk5q5r8vracfldbd1x5rgq7lf6nq"; depends=[limma locfit]; }; + ABarray = derive2 { name="ABarray"; version="1.70.0"; sha256="0p9q2x6n6n1d4w2hfbhhj54qflc6rf1w1qm9p2zqv9fcrm3g153v"; depends=[Biobase multtest]; }; + ACE = derive2 { name="ACE"; version="1.20.0"; sha256="0ll0lksz6nzfj5ivmyrp5w24bhfl083amjpr0m8qlzpdw6k3wi98"; depends=[Biobase GenomicRanges ggplot2 QDNAseq]; }; + ACME = derive2 { name="ACME"; version="2.58.0"; sha256="0cy1f4ki4j7yxc9cws5s17ljd4ac0yxhijms0pm31im81qz2djax"; depends=[Biobase BiocGenerics]; }; + ADAM = derive2 { name="ADAM"; version="1.18.0"; sha256="0gz3mpkj1q4j7w08ylfzclpa6saxsz7wyp0cldllhxpcj9lxljs5"; depends=[dplyr DT GO_db KEGGREST knitr pbapply Rcpp stringr SummarizedExperiment]; }; + ADAMgui = derive2 { name="ADAMgui"; version="1.18.0"; sha256="10m5dplkzxsxm7dxcmybihv81yflm3f7q6fmgb1dvwr8lsn1dm03"; depends=[ADAM colorRamps data_table dplyr DT ggplot2 ggpubr ggrepel ggsignif GO_db gridExtra knitr RColorBrewer reshape2 shiny shinyjs stringi stringr testthat varhandle]; }; + ADImpute = derive2 { name="ADImpute"; version="1.12.0"; sha256="0299yyin2j8577db2w6mrxmsq68cjlzwyh7z1wvhbj0n1p75r871"; depends=[BiocParallel checkmate data_table DrImpute kernlab MASS Matrix rsvd S4Vectors SAVER SingleCellExperiment SummarizedExperiment]; }; + ADaCGH2 = derive2 { name="ADaCGH2"; version="2.42.0"; sha256="0lzgn4zqckv37jsgd1azvshblb38khrlcncm98g74qhkswqj5wx3"; depends=[aCGH bit cluster DNAcopy ff GLAD snapCGH tilingArray waveslim]; }; + AGDEX = derive2 { name="AGDEX"; version="1.50.0"; sha256="06z74p3khw3r8dnwrpyyikq3ifcdvffxgfwcic9j8vc9s8pf921s"; depends=[Biobase GSEABase]; }; + AHMassBank = derive2 { name="AHMassBank"; version="1.2.1"; sha256="1lkv6zkwgnyjpr2vqbmpbz79h6f42s3ksy0ix0hbxdi3aalgyfgf"; depends=[AnnotationHubData]; }; + AIMS = derive2 { name="AIMS"; version="1.34.0"; sha256="0fmzyd8vypcfadqfa8w11mxr12h4a9shgiqpi2n2y150fvhlqf6c"; depends=[Biobase e1071]; }; + ALDEx2 = derive2 { name="ALDEx2"; version="1.34.0"; sha256="0wchlw9dprw7vkw26h26ypx06xv2j0cxbidw61pcqaxmrrh14dhz"; depends=[BiocParallel directlabels GenomicRanges IRanges lattice latticeExtra multtest Rfast S4Vectors SummarizedExperiment zCompositions]; }; + AMARETTO = derive2 { name="AMARETTO"; version="1.18.0"; sha256="1h0ci2sak2x5dhcshmgk4hy53ggjvrz3kaj61m47w5fjkj0lz79s"; depends=[BiocFileCache callr circlize ComplexHeatmap curatedTCGAData doParallel dplyr DT foreach ggplot2 glmnet gridExtra httr impute knitr limma Matrix matrixStats MultiAssayExperiment Rcpp readr reshape2 rmarkdown tibble]; }; + AMOUNTAIN = derive2 { name="AMOUNTAIN"; version="1.28.0"; sha256="1c65vn2k3hzzymik9ia7nk32sf0hr83q27yzf561a1hgv3m67d65"; depends=[]; }; + ANCOMBC = derive2 { name="ANCOMBC"; version="2.4.0"; sha256="1m63k1b9xh5mv4zb5m9nlrdcqkh2h477x1zyfk8j89idcvk9jil7"; depends=[CVXR DescTools doParallel doRNG energy foreach gtools Hmisc lme4 lmerTest MASS Matrix mia multcomp nloptr Rdpack S4Vectors SingleCellExperiment SummarizedExperiment TreeSummarizedExperiment]; }; + APAlyzer = derive2 { name="APAlyzer"; version="1.16.0"; sha256="1jzl274ikk6xp0lq9lr8gfw6f58nn5zs9ifj5mgwsj2vf0ma4mzc"; depends=[DESeq2 dplyr GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel HybridMTest repmis Rsamtools Rsubread rtracklayer SummarizedExperiment tidyr VariantAnnotation]; }; + APL = derive2 { name="APL"; version="1.6.0"; sha256="0p9s7513gq6fggrab3yf132z0sbydfcyay13f1ka889lcgw741bh"; depends=[ggplot2 ggrepel magrittr org_Hs_eg_db org_Mm_eg_db plotly reticulate rlang Seurat SingleCellExperiment SummarizedExperiment topGO viridisLite]; }; + ARRmNormalization = derive2 { name="ARRmNormalization"; version="1.42.0"; sha256="1fd1pfw2ggqb0k2npvibfy8liix57m01cxfxp10shvfbzjjy4wjm"; depends=[ARRmData]; }; + ASAFE = derive2 { name="ASAFE"; version="1.28.0"; sha256="13pn2s59npp8lhc2sk9sa7dq8fy6jlq22c71n3rcjgxrrh690nb8"; depends=[]; }; + ASEB = derive2 { name="ASEB"; version="1.46.3"; sha256="1da6ld3ij55l3saj05ink8i1f6gqwyrv896qh8g94dmh6vzn2xbr"; depends=[]; }; + ASGSCA = derive2 { name="ASGSCA"; version="1.36.0"; sha256="13nk19rccrp0xl1s5gjwydpl1ayc7zc2izjrij9iz7fh2r79gn7f"; depends=[MASS Matrix]; }; + ASICS = derive2 { name="ASICS"; version="2.18.0"; sha256="10wlmnlpn6ji256fp81rhsm2rsbsqsbvbjqqpw9vib11cwpam9wd"; depends=[BiocParallel ggplot2 glmnet gridExtra Matrix mvtnorm PepsNMR plyr quadprog ropls SummarizedExperiment zoo]; }; + ASSET = derive2 { name="ASSET"; version="2.20.0"; sha256="0mm15i59vsnz8zh2d10xnab3a6kq08hwd3pzm3r12g4wcrdsxfxc"; depends=[MASS msm rmeta]; }; + ASSIGN = derive2 { name="ASSIGN"; version="1.38.0"; sha256="15brzfi9ain84171c72w3hzpmjz93g57zz228cbxm3k2s9kn8h7w"; depends=[ggplot2 gplots msm Rlab sva yaml]; }; + ASURAT = derive2 { name="ASURAT"; version="1.6.0"; sha256="0lxl7wgkys6n6xrh2wcp0p2bf33qdd1f3px3nkzk0yk6dvz715v7"; depends=[circlize cluster ComplexHeatmap plot3D Rcpp S4Vectors SingleCellExperiment SummarizedExperiment]; }; + ASpli = derive2 { name="ASpli"; version="2.12.0"; sha256="0rj103vvff2c20r018491i71393x0idq22ri4zg3qibx2accd7jy"; depends=[AnnotationDbi BiocGenerics BiocStyle data_table DT edgeR GenomicAlignments GenomicFeatures GenomicRanges Gviz htmltools igraph IRanges limma MASS pbmcapply Rsamtools S4Vectors tidyr UpSetR]; }; + ATACCoGAPS = derive2 { name="ATACCoGAPS"; version="1.4.0"; sha256="1v9a9hv9s0iv542n4q7d03axf5vnaj3x75chw7f1w1fg1vgb5bna"; depends=[BSgenome_Hsapiens_UCSC_hg19 BSgenome_Mmusculus_UCSC_mm10 chromVAR CoGAPS dplyr fgsea GeneOverlap GenomicFeatures GenomicRanges gplots gtools Homo_sapiens IRanges JASPAR2016 motifmatchr msigdbr Mus_musculus projectR rGREAT stringr TFBSTools tidyverse]; }; + ATACseqQC = derive2 { name="ATACseqQC"; version="1.26.0"; sha256="1b53rkhyqnyh5vangh3hy4yccx1yackwbv1pxdimbp840ji6d122"; depends=[BiocGenerics Biostrings BSgenome ChIPpeakAnno edgeR GenomeInfoDb GenomicAlignments GenomicRanges GenomicScores IRanges KernSmooth limma motifStack preseqR randomForest Rsamtools rtracklayer S4Vectors]; }; + ATACseqTFEA = derive2 { name="ATACseqTFEA"; version="1.4.0"; sha256="1cz2vhg1w62xb3vl7sqhwdzvf9ixv5685lrnp2l1m6xvg4q8wzjw"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 ggrepel IRanges limma Matrix motifmatchr pracma Rsamtools S4Vectors SummarizedExperiment TFBSTools]; }; + AUCell = derive2 { name="AUCell"; version="1.24.0"; sha256="1d1icbq8i7mwsc7lv9pn4r0vs7azx1lwng5p3ghnray1ygqclbi0"; depends=[BiocGenerics data_table DelayedArray DelayedMatrixStats GSEABase Matrix mixtools R_utils shiny SummarizedExperiment]; }; + AWFisher = derive2 { name="AWFisher"; version="1.16.0"; sha256="10c5qi040z2w46k7qdcd2yap11mzllllrbr0nx7gd9gfzwlx089s"; depends=[edgeR limma]; }; + AffiXcan = derive2 { name="AffiXcan"; version="1.20.0"; sha256="1f508sz5vsmmmvp2mcyd2l4hislg2xhnn11xxva010l3i7by8c2r"; depends=[BiocParallel crayon MultiAssayExperiment SummarizedExperiment]; }; + AffyRNADegradation = derive2 { name="AffyRNADegradation"; version="1.48.0"; sha256="0i7929cyqvbx81v1d629g53480m48cbdpxfv0k6lwjfzf4yvazhf"; depends=[affy]; }; + AgiMicroRna = derive2 { name="AgiMicroRna"; version="2.52.0"; sha256="0cimi60asz5mmrq2qmnyqq9x5yg14cc67j8135x9zlklblsfyf35"; depends=[affy affycoretools Biobase limma preprocessCore]; }; + AllelicImbalance = derive2 { name="AllelicImbalance"; version="1.40.0"; sha256="0p7l856a46zzla8brsg901pmh5738j63h7h7rn3da94ny8k417mf"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridExtra Gviz IRanges lattice latticeExtra nlme Rsamtools S4Vectors seqinr SummarizedExperiment VariantAnnotation]; }; + AlphaBeta = derive2 { name="AlphaBeta"; version="1.16.0"; sha256="0zja8mysw0ljkvk6vqdx4c9wpf45zs64iyazh90mlf6xhbrvqfvq"; depends=[BiocParallel data_table dplyr expm ggplot2 gtools igraph optimx plotly stringr]; }; + AlpsNMR = derive2 { name="AlpsNMR"; version="4.4.0"; sha256="0141kayx20mm8skqr2210bpl76ra560ik7gf71iar03r3izcfczq"; depends=[baseline BiocParallel cli dplyr fs future generics ggplot2 glue htmltools magrittr matrixStats mixOmics pcaPP purrr readxl reshape2 rlang rmarkdown scales signal speaq stringr tibble tidyr tidyselect vctrs]; }; + AnVIL = derive2 { name="AnVIL"; version="1.14.1"; sha256="06n0as71m3dfbnzjfq8f1s0r40w4flc8am7zb0293c1037clmcig"; depends=[BiocManager dplyr DT futile_logger htmltools httr jsonlite miniUI rapiclient rlang shiny tibble tidyr tidyselect]; }; + AnVILBilling = derive2 { name="AnVILBilling"; version="1.12.0"; sha256="1b90q6nvf6mzq1r9r679b33k6pqywwnjwkfdhfc3kp5i0d3xfh4s"; depends=[bigrquery DBI dplyr DT ggplot2 lubridate magrittr plotly shiny shinytoastr]; }; + AnVILPublish = derive2 { name="AnVILPublish"; version="1.12.0"; sha256="0yk5v4863h58795apffj6hp6iikgw5jx220s9f3j2fvvdpv3z995"; depends=[AnVIL httr jsonlite readr rmarkdown whisker yaml]; }; + AnVILWorkflow = derive2 { name="AnVILWorkflow"; version="1.2.0"; sha256="15yvpmpkii030v13bixhdj4g8b1qwjn9cm8k4rbpz6iqngaa4w5i"; depends=[AnVIL httr jsonlite]; }; + Anaquin = derive2 { name="Anaquin"; version="2.26.0"; sha256="1f2xf1i9l1s7433mvqjsralpm77qg0m73dw1rq9jsxbpk1f502ld"; depends=[DESeq2 ggplot2 knitr locfit plyr qvalue ROCR]; }; + AneuFinder = derive2 { name="AneuFinder"; version="1.30.0"; sha256="0x7v60j1c1g12qlqxgshpmbnwzjbmlnkrfh60wl43inr0wyllq1l"; depends=[AneuFinderData bamsignals BiocGenerics Biostrings cowplot DNAcopy doParallel ecp foreach GenomeInfoDb GenomicAlignments GenomicRanges ggdendro ggplot2 ggrepel IRanges mclust reshape2 Rsamtools S4Vectors]; }; + AnnotationDbi = derive2 { name="AnnotationDbi"; version="1.64.1"; sha256="1bdr303a2z03c8vc8q95a4a4a8i956vimia5yik78yddd1ig9gq3"; depends=[Biobase BiocGenerics DBI IRanges KEGGREST RSQLite S4Vectors]; }; + AnnotationFilter = derive2 { name="AnnotationFilter"; version="1.26.0"; sha256="0cd2vcnx0pn5wba3x5q32vddjjp7fvix7yd7jrwv07a2fkv9c4p5"; depends=[GenomicRanges lazyeval]; }; + AnnotationForge = derive2 { name="AnnotationForge"; version="1.44.0"; sha256="0dbbg0wvk1ndv20d5j80waaz0z1bsp7y2k2m17jly4ax2hc5frc9"; depends=[AnnotationDbi Biobase BiocGenerics DBI RCurl RSQLite S4Vectors XML]; }; + AnnotationHub = derive2 { name="AnnotationHub"; version="3.10.0"; sha256="1mx3vip1rx5lq0vnkxpmkyksnq4vygmww85vxq3spr0fah1pwnkr"; depends=[AnnotationDbi BiocFileCache BiocGenerics BiocManager BiocVersion curl dplyr httr interactiveDisplayBase rappdirs RSQLite S4Vectors yaml]; }; + AnnotationHubData = derive2 { name="AnnotationHubData"; version="1.32.0"; sha256="0jkz65z7l9vaxid6vpsr4rdavarkayfrgkybzhwf9va82jsnkd3z"; depends=[AnnotationDbi AnnotationForge AnnotationHub Biobase BiocCheck BiocGenerics BiocManager biocViews Biostrings DBI futile_logger GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges jsonlite OrganismDbi RCurl Rsamtools RSQLite rtracklayer S4Vectors XML]; }; + ArrayExpress = derive2 { name="ArrayExpress"; version="1.62.0"; sha256="0cnb6r6rqbz5qph32aa1mghr0w2rhl6znyiblj0cbkv45mx2k4jr"; depends=[Biobase httr jsonlite limma oligo rlang]; }; + AssessORF = derive2 { name="AssessORF"; version="1.20.0"; sha256="0v64d3nmvcj6bz8zplyqzslm7kz6j3y0nl316h76g094hify64lk"; depends=[Biostrings DECIPHER GenomicRanges IRanges]; }; + BADER = derive2 { name="BADER"; version="1.40.0"; sha256="0zmf7a7lwsnk9gcg48vmzdvfmzhvnbawwg77pb4gy3cw9sjdz5ym"; depends=[]; }; + BAGS = derive2 { name="BAGS"; version="2.42.0"; sha256="0356ragpcldr48yycqj91sn3bcqvvfp5spv2z02r8g6hs0dndwdh"; depends=[Biobase breastCancerVDX]; }; + BANDITS = derive2 { name="BANDITS"; version="1.18.1"; sha256="0y81m37c5irpaw9pfm5b672wk804n4x1g9g5pfh1dp7pggfwbf1z"; depends=[BiocParallel data_table doParallel doRNG DRIMSeq foreach ggplot2 MASS R_utils Rcpp RcppArmadillo]; }; + BASiCS = derive2 { name="BASiCS"; version="2.14.0"; sha256="0kf215n151sxphc5w9h4i2xsk7lmysi4abwcpyz4slbwhpki3ac8"; depends=[assertthat Biobase BiocGenerics BiocParallel coda cowplot ggExtra ggplot2 hexbin MASS Matrix matrixStats posterior Rcpp RcppArmadillo reshape2 S4Vectors scran scuttle SingleCellExperiment SummarizedExperiment viridis]; }; + BASiCStan = derive2 { name="BASiCStan"; version="1.4.0"; sha256="01pa2sjmn6asbchxm0gdb8nyzsc73pay26jpv6fnl3gijiwm2xii"; depends=[BASiCS BH glmGamPoi Rcpp RcppEigen RcppParallel rstan rstantools scran scuttle SingleCellExperiment StanHeaders SummarizedExperiment]; }; + BBCAnalyzer = derive2 { name="BBCAnalyzer"; version="1.32.0"; sha256="108jcgsf5hyj348y17hcw8m3zcfjgzpx8nz4n5jgxp2lgxjyizy1"; depends=[Biostrings GenomicRanges IRanges Rsamtools SummarizedExperiment VariantAnnotation]; }; + BCRANK = derive2 { name="BCRANK"; version="1.64.0"; sha256="1m1ccacryf8wjzp0d37n9n1kpa6734ddb8nvv1sy0sz5gplrars9"; depends=[Biostrings]; }; + BEARscc = derive2 { name="BEARscc"; version="1.22.0"; sha256="0lxnmfqnvkdvyhmpqx4nxr8swvsadfx98rpzfz5r6xdkd3alizv8"; depends=[data_table ggplot2 SingleCellExperiment]; }; + BEAT = derive2 { name="BEAT"; version="1.40.0"; sha256="1kxclpl92pvdxydginp6wj9kvrxy4sh7650fb6vm3cxsnzzbs9xs"; depends=[Biostrings BSgenome GenomicRanges ShortRead]; }; + BEclear = derive2 { name="BEclear"; version="2.18.0"; sha256="1a8jmlx17qcx9qzcaxbnlk6qji6hqxcnzmr8zvar9jrfhx0cv9x1"; depends=[abind BiocParallel data_table dixonTest futile_logger ids Matrix Rcpp Rdpack]; }; + BG2 = derive2 { name="BG2"; version="1.2.0"; sha256="1r4qvqgpjw760mnbcb5xas23mnbvy64098b81467fsc0cjwrps6w"; depends=[caret GA MASS Matrix memoise]; }; + BHC = derive2 { name="BHC"; version="1.54.0"; sha256="1m289q9bs7i7d15g5mzdmzw7yppnqspr8illkya8kxlv1i2sify1"; depends=[]; }; + BLMA = derive2 { name="BLMA"; version="1.26.0"; sha256="1avidkxgdm6klxwzyaaniff7ajbkj6aw5ypk3qk3zscj6rd5ark2"; depends=[Biobase graph GSA limma metafor PADOG ROntoTools]; }; + BOBaFIT = derive2 { name="BOBaFIT"; version="1.6.0"; sha256="1h9s0ff31glbbamw5pjyiv4m9v4pp7mm64mmdp55yqfrnhbgy6hi"; depends=[dplyr GenomicRanges ggbio ggforce ggplot2 magrittr NbClust plyranges stringr tidyr]; }; + BPRMeth = derive2 { name="BPRMeth"; version="1.28.0"; sha256="0ic9yh9r2wvrrjq82jivpfyav6ah2g2fk8pbfa86dapaq8lwvabf"; depends=[assertthat BiocStyle cowplot data_table doParallel e1071 earth foreach GenomicRanges ggplot2 IRanges kernlab magrittr MASS matrixcalc mvtnorm randomForest Rcpp RcppArmadillo S4Vectors truncnorm]; }; + BRAIN = derive2 { name="BRAIN"; version="1.48.0"; sha256="05s22lh1p4plb4n69ndbwhv0k86kwyg75sv9bxja4y1xnkidfq8f"; depends=[Biostrings lattice PolynomF]; }; + BRGenomics = derive2 { name="BRGenomics"; version="1.13.0"; sha256="1y90pfrn7c6v3n0rlymxlljjcmblq1lfprnzy3xmjh9y7n4lnr2g"; depends=[DESeq2 GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; + BSgenome = derive2 { name="BSgenome"; version="1.70.1"; sha256="1bdrh1kp7ihnlyvgdvwdzly69l9zy5rr09gizm0l59zy4kh59nih"; depends=[BiocGenerics BiocIO Biostrings GenomeInfoDb GenomicRanges IRanges matrixStats Rsamtools rtracklayer S4Vectors XVector]; }; + BSgenomeForge = derive2 { name="BSgenomeForge"; version="1.2.1"; sha256="0wgs8j7kr6cma3h7gw9sjdm9k8jmfa9yjkzp6hmrv1p7nm3cbian"; depends=[Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb IRanges rtracklayer S4Vectors]; }; + BUMHMM = derive2 { name="BUMHMM"; version="1.26.0"; sha256="0ap8z0rk2w6ja19md4fa4h8lv2gxz12k5a7r4s5chbf4f7k2a480"; depends=[Biostrings devtools gtools IRanges stringi SummarizedExperiment]; }; + BUS = derive2 { name="BUS"; version="1.58.0"; sha256="154fhml5x1j6yypazvjahzr9fhfqrwi3486x8bm3nqx9n4sfpn0v"; depends=[infotheo minet]; }; + BUScorrect = derive2 { name="BUScorrect"; version="1.20.0"; sha256="0l3hbx2j9cm73fvyam6bpjzikg4ai4n8rqwfwmpqifaqcmfd4qgf"; depends=[gplots SummarizedExperiment]; }; + BUSpaRse = derive2 { name="BUSpaRse"; version="1.16.0"; sha256="0fw90bg5c7a5ms08zinbf2l4c4cpnz1s5ql5vhhmhx2k2434khp8"; depends=[AnnotationDbi AnnotationFilter BH BiocGenerics biomaRt Biostrings BSgenome dplyr ensembldb GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges magrittr Matrix plyranges Rcpp RcppArmadillo RcppProgress S4Vectors stringr tibble tidyr zeallot]; }; + BUSseq = derive2 { name="BUSseq"; version="1.8.0"; sha256="1pmi2mbnpdxp4q2kh0h68bjq6j0rrh8nnlxidfk92gw058vhbv60"; depends=[gplots S4Vectors SingleCellExperiment SummarizedExperiment]; }; + BaalChIP = derive2 { name="BaalChIP"; version="1.28.0"; sha256="0d08mp12lw4qdy7w7i474ywcy2zgv940nc44w0gbb9h9dfl22crv"; depends=[coda doBy doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges reshape2 Rsamtools scales]; }; + BadRegionFinder = derive2 { name="BadRegionFinder"; version="1.30.0"; sha256="17smlghl8s667n6cjx64mqli9drmv0pkq51mhjlyjy2v019im7l9"; depends=[biomaRt GenomicRanges Rsamtools S4Vectors VariantAnnotation]; }; + BaseSpaceR = derive2 { name="BaseSpaceR"; version="1.46.0"; sha256="1ldsgrhxb1nm8xj7mws461apjknp9c2bhq3738f63i2qj9g25j4g"; depends=[RCurl RJSONIO]; }; + Basic4Cseq = derive2 { name="Basic4Cseq"; version="1.38.0"; sha256="1vlrrkg885w77w34m2q8hngr95hhh5bkw9hrzyhnp39igjkcwqx4"; depends=[Biostrings BSgenome_Ecoli_NCBI_20080805 caTools GenomicAlignments GenomicRanges RCircos]; }; + BasicSTARRseq = derive2 { name="BasicSTARRseq"; version="1.30.0"; sha256="1dw6bv1qk2bn0l3m458sqgvm3s1karh4n3431pl7r0jj2r3mr6xa"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges S4Vectors]; }; + BatchQC = derive2 { name="BatchQC"; version="1.30.0"; sha256="1xfa4g32b7vzj2l8bv0fa1xb15vlk7x933g2wxx4qz78a2wkd6yq"; depends=[corpcor ggvis gplots heatmaply knitr limma Matrix matrixStats MCMCpack moments pander reshape2 rmarkdown shiny sva]; }; + BayesKnockdown = derive2 { name="BayesKnockdown"; version="1.28.0"; sha256="1argd4gfld2yb0vvpgb5k7m6agmi58712f6g5dj4gnb7kg4rp1l8"; depends=[Biobase]; }; + BayesSpace = derive2 { name="BayesSpace"; version="1.12.0"; sha256="1mqgsylnrvf197cin5zzihjv31bm2q0m5a612ncbglys6n1jd105"; depends=[assertthat BiocFileCache BiocSingular coda DirichletReg ggplot2 Matrix mclust purrr Rcpp RcppArmadillo RcppDist RcppProgress RCurl rhdf5 S4Vectors scales scater scran SingleCellExperiment SummarizedExperiment xgboost]; }; + BeadDataPackR = derive2 { name="BeadDataPackR"; version="1.54.0"; sha256="0sfpdpw6qqffzb9skzx9w1ggcixc3wry9c6f2kwpsykbdsnk90xz"; depends=[]; }; + BgeeCall = derive2 { name="BgeeCall"; version="1.18.1"; sha256="1ipypkyfqx6mahiwl0gzdsi7z9j9cm5rgfw4ybgh6blfq8kg9qyk"; depends=[biomaRt Biostrings data_table dplyr GenomicFeatures jsonlite rhdf5 rslurm rtracklayer sjmisc tximport]; }; + BgeeDB = derive2 { name="BgeeDB"; version="2.28.0"; sha256="1ahip21wihwg9yhq0ya1cyzd2cq423hz9pd6iql6y3yhld4j5rnn"; depends=[Biobase curl data_table digest dplyr graph R_utils RCurl RSQLite tidyr topGO]; }; + BiFET = derive2 { name="BiFET"; version="1.22.0"; sha256="056zqlql39q44snvx5nzc5snrihpr1kj3jdbpbb401hxi9r64f4r"; depends=[GenomicRanges poibin]; }; + BiGGR = derive2 { name="BiGGR"; version="1.38.0"; sha256="1pdsxkh9fkgn80f7p21902pb6xp2qafq10p29ifb55qwz8gma2ff"; depends=[hyperdraw hypergraph LIM limSolve rsbml stringr]; }; + BiRewire = derive2 { name="BiRewire"; version="3.34.0"; sha256="1h5pmd38b9zpbz1nngmk1s0cag4z0vx93yi2n7r85nca9z02cxad"; depends=[igraph Matrix Rtsne slam]; }; + BiSeq = derive2 { name="BiSeq"; version="1.42.0"; sha256="0ajx73bnx36cik70p4lbbnsr36ly88y57qqlp0mqbmn2mzqv5ajg"; depends=[betareg Biobase BiocGenerics Formula GenomeInfoDb GenomicRanges globaltest IRanges lokern rtracklayer S4Vectors SummarizedExperiment]; }; + BicARE = derive2 { name="BicARE"; version="1.60.0"; sha256="10inwxl1cmkdp8037wcwkj5wzxsrrcysxfbqhnkh7pzhzvwnzz9h"; depends=[Biobase GO_db GSEABase multtest]; }; + BindingSiteFinder = derive2 { name="BindingSiteFinder"; version="2.0.0"; sha256="1af4q8hzdjbi058a5l70jps5r7k3nccs8096gsfhgqfc9vanv6dy"; depends=[ComplexHeatmap dplyr forcats GenomeInfoDb GenomicFeatures GenomicRanges ggdist ggforce ggplot2 IRanges kableExtra lifecycle matrixStats plyr RColorBrewer rlang rtracklayer S4Vectors tibble tidyr]; }; + BioCartaImage = derive2 { name="BioCartaImage"; version="1.0.0"; sha256="0xp0znvlgh29f3y4n4gjc66c17jpifxk0ik49dqrdn6q1p2cbcv9"; depends=[magick]; }; + BioCor = derive2 { name="BioCor"; version="1.26.0"; sha256="0710dl05hs590fimp3dhg5hzvk6s79i0kwk6w6sj59pcawx2l6il"; depends=[BiocParallel GSEABase Matrix]; }; + BioMVCClass = derive2 { name="BioMVCClass"; version="1.70.0"; sha256="04ckv1y5iqawd0dvnn0bbpnmyys0ivcmf0my6dld3hib3idjzwfx"; depends=[Biobase graph MVCClass Rgraphviz]; }; + BioNAR = derive2 { name="BioNAR"; version="1.4.1"; sha256="0qbrma7q5xlhh3ysdhkbkk713nq10wzd7wly6yhdkfcv9mmiivzv"; depends=[AnnotationDbi clusterCons cowplot data_table dplyr fgsea ggplot2 ggrepel GO_db igraph latex2exp Matrix minpack_lm org_Hs_eg_db poweRlaw Rdpack RSpectra rSpectral scales stringr viridis WGCNA]; }; + BioNERO = derive2 { name="BioNERO"; version="1.10.0"; sha256="0pq5fiacb2x8l5jk3p6bnha9bcwg91grpklgx2nirrlwwr80gf2h"; depends=[BiocParallel ComplexHeatmap dynamicTreeCut GENIE3 ggdendro ggnetwork ggplot2 ggrepel igraph intergraph matrixStats minet NetRep patchwork RColorBrewer reshape2 rlang SummarizedExperiment sva WGCNA]; }; + BioNet = derive2 { name="BioNet"; version="1.62.0"; sha256="122rj6rg4j9q9brhxyrbkc91fml3davk044s2yxwyjnwn2yjw0bq"; depends=[AnnotationDbi Biobase graph igraph RBGL]; }; + BioNetStat = derive2 { name="BioNetStat"; version="1.22.0"; sha256="1rbb36v64b9xbk2dsf6wsyrhwwbkysrj8fp1g22y3gisdk170sg8"; depends=[BiocParallel DT ggplot2 Hmisc igraph knitr markdown pathview pheatmap plyr psych RColorBrewer RJSONIO rmarkdown shiny shinyBS whisker yaml]; }; + BioQC = derive2 { name="BioQC"; version="1.30.0"; sha256="15kmg102259h2yl3b6ncq2p545kdac4hk4kwm1s5492y5rg7qkla"; depends=[Biobase edgeR Rcpp]; }; + BioTIP = derive2 { name="BioTIP"; version="1.16.0"; sha256="1bbjfv3bi20xlk8h7r5ipav6mfs27lmj0zjb5mk1gmp071dmnk0y"; depends=[cluster GenomicRanges igraph MASS psych scran stringr]; }; + Biobase = derive2 { name="Biobase"; version="2.62.0"; sha256="0znkawzr3hgbp2dkdk30ziqa6ylbq2nf0xmz4vi089cw9763lxgg"; depends=[BiocGenerics]; }; + BiocBaseUtils = derive2 { name="BiocBaseUtils"; version="1.4.0"; sha256="189jz8krhv0vdnk47m3cmy95zfg3l328w6dbhg6djvlkca17i275"; depends=[]; }; + BiocBook = derive2 { name="BiocBook"; version="1.0.0"; sha256="0lk4rm5q8q5xkiayg6chb7xdagjyz66wga9v3yl4nwangk0rfsil"; depends=[available BiocGenerics cli dplyr gert gh gitcreds glue httr purrr quarto renv rlang rprojroot stringr tibble usethis yaml]; }; + BiocCheck = derive2 { name="BiocCheck"; version="1.38.0"; sha256="11d67dfwxc34n7yzpz58ficjk7sxnbxrajhnqlcxvsifgmybkb4d"; depends=[BiocBaseUtils BiocFileCache BiocManager biocViews callr codetools graph httr knitr stringdist]; }; + BiocFHIR = derive2 { name="BiocFHIR"; version="1.4.0"; sha256="1syp4yc7kdzywln1lscr5a6f20nl7jjw86sbxj2ci1f01wbiq63w"; depends=[BiocBaseUtils dplyr DT graph jsonlite shiny tidyr visNetwork]; }; + BiocFileCache = derive2 { name="BiocFileCache"; version="2.10.1"; sha256="044kh1rfgb608y2v4wzbzddirhw5crj3k6i28wr78qgnzqc89mdm"; depends=[curl DBI dbplyr dplyr filelock httr RSQLite]; }; + BiocGenerics = derive2 { name="BiocGenerics"; version="0.48.1"; sha256="0av525j9l0y3kjdy5wl6s35sh4nsabmdclq3687l5258kmq2dq8k"; depends=[]; }; + BiocHail = derive2 { name="BiocHail"; version="1.2.0"; sha256="02dss0xbrxl1l6py9xmag1f5vqr031n343jk2jcf4idn4zr02s6m"; depends=[basilisk BiocFileCache BiocGenerics dplyr reticulate]; }; + BiocHubsShiny = derive2 { name="BiocHubsShiny"; version="1.2.0"; sha256="1sz27svvpvcys4b9p53da1javkh5k9235pzsjvn2wx76gi6b1jkj"; depends=[AnnotationHub DT ExperimentHub htmlwidgets S4Vectors shiny shinyAce shinyjs shinythemes shinytoastr]; }; + BiocIO = derive2 { name="BiocIO"; version="1.12.0"; sha256="0bn2jknvj2ag1yv67kjqr7gsq771rmqv3my9njjkwcc9nzrxzhbp"; depends=[BiocGenerics S4Vectors]; }; + BiocNeighbors = derive2 { name="BiocNeighbors"; version="1.20.2"; sha256="0lvsw920i75di5pwq7yvk8wcxp01wrh7863xmwbrmk5jrvl3y4h4"; depends=[BiocParallel Matrix Rcpp RcppHNSW S4Vectors]; }; + BiocOncoTK = derive2 { name="BiocOncoTK"; version="1.22.0"; sha256="1xymgfiv9abyaq5s7m683ml8a1ls9mqvbh9qjiz3jqbbpvmsm502"; depends=[bigrquery car ComplexHeatmap curatedTCGAData DBI dplyr DT GenomicFeatures GenomicRanges ggplot2 ggpubr graph httr IRanges magrittr MASS plyr Rgraphviz rjson S4Vectors scales shiny SummarizedExperiment]; }; + BiocParallel = derive2 { name="BiocParallel"; version="1.36.0"; sha256="19h80qf0zdxfg3pkcwwywh9gg0ymv92n51qpimnw4c3w5iaszy6b"; depends=[BH codetools cpp11 futile_logger snow]; }; + BiocPkgTools = derive2 { name="BiocPkgTools"; version="1.20.0"; sha256="0swi6xiads31xcndc2cfzh0ivdl0wc88s83s1p1gxh51rgmgkb14"; depends=[BiocFileCache BiocManager biocViews dplyr DT gh graph htmltools htmlwidgets httr igraph jsonlite magrittr RBGL readr rlang rorcid rvest stringr tibble xml2]; }; + BiocSet = derive2 { name="BiocSet"; version="1.16.0"; sha256="0sk4kmvl86xm85dqaf8gvii0qavyycyn2qp0v6dmfcjqai528v2x"; depends=[AnnotationDbi BiocIO dplyr KEGGREST ontologyIndex plyr rlang S4Vectors tibble tidyr]; }; + BiocSingular = derive2 { name="BiocSingular"; version="1.18.0"; sha256="0z1p02329wk2x058ij42q5pyvp0vhsihaxmizgzcj4sww6i28j33"; depends=[beachmat BiocGenerics BiocParallel DelayedArray irlba Matrix Rcpp rsvd S4Vectors ScaledMatrix]; }; + BiocSklearn = derive2 { name="BiocSklearn"; version="1.24.0"; sha256="01q9i3ncgi5ddkpvh47y061n8s7cvl19xlra6j591h0lxm65a6yx"; depends=[basilisk reticulate SummarizedExperiment]; }; + BiocStyle = derive2 { name="BiocStyle"; version="2.30.0"; sha256="17pkdi3vn62pw1nzmgz0i45czynqjchq078ij8v1xvflg6lf7flw"; depends=[BiocManager bookdown knitr rmarkdown yaml]; }; + BiocVersion = derive2 { name="BiocVersion"; version="3.18.1"; sha256="15wr651ylbx3am213dsy5kdr1xc8r5c9rfq5ydxzqlmxzjgymj55"; depends=[]; }; + BiocWorkflowTools = derive2 { name="BiocWorkflowTools"; version="1.28.0"; sha256="0mh7lsiprshq56ns3b8pbv1j1mjcbdzqydvli0ynmvf5smn2j4m5"; depends=[BiocStyle bookdown git2r httr knitr rmarkdown rstudioapi stringr usethis]; }; + Biostrings = derive2 { name="Biostrings"; version="2.70.1"; sha256="198y36yfkncsp4sw00ij8cal45al67f9nx84bbszhygaq0jh504y"; depends=[BiocGenerics crayon GenomeInfoDb IRanges S4Vectors XVector]; }; + BloodGen3Module = derive2 { name="BloodGen3Module"; version="1.10.0"; sha256="0nzgqpgdjz0vqrijnwgpr4z41jwrf7bkrzfb1y6a04d3lrm6xmbc"; depends=[circlize ComplexHeatmap ExperimentHub ggplot2 gtools limma matrixStats preprocessCore randomcoloR reshape2 SummarizedExperiment testthat V8]; }; + BridgeDbR = derive2 { name="BridgeDbR"; version="2.12.0"; sha256="01y20lnna6fw6pgc1p0760kql120f0rjy9dicl97c8iv25m3kwzp"; depends=[curl rJava]; }; + BrowserViz = derive2 { name="BrowserViz"; version="2.24.0"; sha256="1m4wvpzfhcfpn4slms8584pv5wa467fd4avk7wk5my1ifnwwjvr5"; depends=[BiocGenerics httpuv jsonlite]; }; + BubbleTree = derive2 { name="BubbleTree"; version="2.32.0"; sha256="0a4jnchzxfvh6k9dlhlkf5lshqmj33w3lqjdyz414ka6jlh8jwpq"; depends=[Biobase BiocGenerics BiocStyle biovizBase dplyr e1071 GenomicRanges ggplot2 gridExtra gtable gtools IRanges limma magrittr plyr RColorBrewer WriteXLS]; }; + BufferedMatrix = derive2 { name="BufferedMatrix"; version="1.66.0"; sha256="1a3jrx2ym4ja6vhqnpm1w6c54df4y71qrcp91kkzc4g8k7ab8nhr"; depends=[]; }; + BufferedMatrixMethods = derive2 { name="BufferedMatrixMethods"; version="1.66.0"; sha256="023bpc3sakvxmdv1zxxwqwrgr8ap6p16jb15935v29qrwss643w9"; depends=[BufferedMatrix]; }; + BumpyMatrix = derive2 { name="BumpyMatrix"; version="1.10.0"; sha256="0ic87fjxwb39nmys09zb6k3ghcx8mmmj9pifljs10449i2lgzl2r"; depends=[IRanges Matrix S4Vectors]; }; + CAEN = derive2 { name="CAEN"; version="1.10.0"; sha256="0mw2vy7s9iihbzg6zfccn99607bkvqga0iynl1kgc1bwvl7zlam4"; depends=[PoiClaClu SummarizedExperiment]; }; + CAFE = derive2 { name="CAFE"; version="1.38.0"; sha256="1an1190g6b0xi36lmh8mnqas7bv5b9khcp4jsqnd04w22d4xf3jw"; depends=[affy annotate Biobase biovizBase GenomicRanges ggbio ggplot2 gridExtra IRanges]; }; + CAGEfightR = derive2 { name="CAGEfightR"; version="1.22.0"; sha256="0hbxrzsg4iqiwn74pha804xfy2ab9ijfxpv2g4ksqjv53pihkzc0"; depends=[assertthat BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicInteractions GenomicRanges Gviz InteractionSet IRanges Matrix pryr rtracklayer S4Vectors SummarizedExperiment]; }; + CAGEr = derive2 { name="CAGEr"; version="2.8.0"; sha256="131ab9dfckvw8mg22ics6mknfmspb1aaysmqgaxxc3rzf81d7w3q"; depends=[BiocGenerics BiocParallel BSgenome CAGEfightR data_table DelayedArray DelayedMatrixStats formula_tools GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges KernSmooth memoise MultiAssayExperiment plyr reshape2 Rsamtools rtracklayer S4Vectors som stringdist stringi SummarizedExperiment vegan VGAM]; }; + CAMERA = derive2 { name="CAMERA"; version="1.58.0"; sha256="1pa4ha4r8n3gpl0iqpzrax56nwcqf0i6mldsrlvn194024xma721"; depends=[Biobase graph Hmisc igraph RBGL xcms]; }; + CARNIVAL = derive2 { name="CARNIVAL"; version="2.12.0"; sha256="0yqanic5y2wy8p729iw8yb1b09chv2y15qfnlbkymq9j12m28v4v"; depends=[dplyr igraph lpSolve readr rjson rmarkdown stringr tibble tidyr]; }; + CATALYST = derive2 { name="CATALYST"; version="1.26.0"; sha256="0dfg9ib0imk8bmhycqrspnn8yvfdlchwvx39wgqxi5fb9zrppfz4"; depends=[circlize ComplexHeatmap ConsensusClusterPlus cowplot data_table dplyr drc flowCore FlowSOM ggplot2 ggrepel ggridges gridExtra Matrix matrixStats nnls purrr RColorBrewer reshape2 Rtsne S4Vectors scales scater SingleCellExperiment SummarizedExperiment]; }; + CBEA = derive2 { name="CBEA"; version="1.2.0"; sha256="0w76bp2jhd4dyfrj66cmairx9k920n24prgy051m83xmda5l3v9b"; depends=[BiocParallel BiocSet dplyr fitdistrplus generics glue goftest lmom magrittr mixtools Rcpp rlang SummarizedExperiment tibble tidyr TreeSummarizedExperiment]; }; + CBNplot = derive2 { name="CBNplot"; version="1.2.1"; sha256="0f5wklg8ipfj7lb2sag0cg9yghl6m4jxyn834zwa52gk546fdcgd"; depends=[BiocFileCache bnlearn clusterProfiler depmap dplyr enrichplot ExperimentHub ggdist ggforce ggplot2 ggraph graphite graphlayouts igraph magrittr oaqc org_Hs_eg_db patchwork purrr pvclust reshape2 rlang Rmpfr stringr tidyr]; }; + CCPROMISE = derive2 { name="CCPROMISE"; version="1.28.0"; sha256="12fldnqhg1ds3frjh1vppaqgkf94v9q38hzc36jcq20gdin13i5s"; depends=[Biobase CCP GSEABase PROMISE]; }; + CCPlotR = derive2 { name="CCPlotR"; version="1.0.0"; sha256="1c393aa102w0qk97pb0mknf9lx6h1s47gj4zbckbdxsivxm5hzjp"; depends=[circlize ComplexHeatmap dplyr forcats ggbump ggh4x ggplot2 ggraph ggtext igraph patchwork plyr RColorBrewer scales scatterpie stringr tibble tidyr viridis]; }; + CDI = derive2 { name="CDI"; version="1.0.2"; sha256="0zxflvhqcgyjn1rxg4x1l7m30jw8mvml5v2j4zzqxixn63rmjmxg"; depends=[BiocParallel ggplot2 ggsci matrixStats reshape2 Seurat SeuratObject SingleCellExperiment SummarizedExperiment]; }; + CEMiTool = derive2 { name="CEMiTool"; version="1.26.0"; sha256="1sjvpk3nz495vdpj8h3a571g3l6aabj4zg7pgd69grzw67r6v858"; depends=[clusterProfiler data_table dplyr DT fastcluster fgsea ggdendro ggplot2 ggpmisc ggrepel ggthemes gridExtra gtable htmltools igraph intergraph knitr matrixStats network pracma rmarkdown scales sna stringr WGCNA]; }; + CFAssay = derive2 { name="CFAssay"; version="1.36.0"; sha256="0fhkds47w2h2y9angk52w2iwj6agc870m79shvp2pkq1jl9ika24"; depends=[]; }; + CGEN = derive2 { name="CGEN"; version="3.38.0"; sha256="052yxwzk26kh2kmwdrvgj4nkxpmfqr3fiwcpqjy1r1swhgzxc29n"; depends=[mvtnorm survival]; }; + CGHbase = derive2 { name="CGHbase"; version="1.62.0"; sha256="1iw03gq1kvmn9a6h0kw389l9i7h99fbxcsag9f3gkfznjv0vp5k4"; depends=[Biobase marray]; }; + CGHcall = derive2 { name="CGHcall"; version="2.64.0"; sha256="1x2zfr40bm42zd1bljwpbz3cz1q23a3yy1g277lwsp78gxbn3zly"; depends=[Biobase CGHbase DNAcopy impute snowfall]; }; + CGHnormaliter = derive2 { name="CGHnormaliter"; version="1.56.0"; sha256="18wnrp689pi7llg23nwf52r0kbx9ziyhvqg0c2k47h7kkypwf1gn"; depends=[Biobase CGHbase CGHcall]; }; + CGHregions = derive2 { name="CGHregions"; version="1.60.0"; sha256="1dcwacqymv7c73xyw5l7nvvih9ilf5nqcy93xlk5bgvaf9irmgff"; depends=[Biobase CGHbase]; }; + CHETAH = derive2 { name="CHETAH"; version="1.18.0"; sha256="0y76gk17sjiw28f4cs670f3z3s94iyp293r4w79gs66jfmkhp5s6"; depends=[bioDist corrplot cowplot dendextend ggplot2 pheatmap plotly reshape2 S4Vectors shiny SingleCellExperiment SummarizedExperiment]; }; + CHRONOS = derive2 { name="CHRONOS"; version="1.30.0"; sha256="16r409ygnlrwd8aa274klvx2w2m2mh7mfjwfa5949753zgzn1mfz"; depends=[biomaRt circlize doParallel foreach graph igraph openxlsx RBGL RCurl rJava XML]; }; + CIMICE = derive2 { name="CIMICE"; version="1.10.0"; sha256="0n2bjyqwgpvl2b609v6qk84h4vc3476l71c0cslvkk9n78kpqvmk"; depends=[assertthat dplyr expm ggcorrplot ggplot2 ggraph glue igraph maftools Matrix networkD3 purrr tidygraph tidyr visNetwork]; }; + CINdex = derive2 { name="CINdex"; version="1.30.0"; sha256="15g2hmy136zj1fay6sj0qv4xkk2crhi16cxymd0b3i7r8qimv2vp"; depends=[bitops dplyr GenomeInfoDb GenomicRanges gplots gridExtra IRanges png S4Vectors som stringr]; }; + CMA = derive2 { name="CMA"; version="1.60.0"; sha256="04amq5xdml3zkkhfyrp7my4wnsihaq00hig95cnxrnn84vlbszbv"; depends=[Biobase]; }; + CNAnorm = derive2 { name="CNAnorm"; version="1.48.0"; sha256="01dr5yja660vq2akmb5gjgjsgqb9420vxhig7iqw2a2igwvk60h5"; depends=[DNAcopy]; }; + CNEr = derive2 { name="CNEr"; version="1.38.0"; sha256="0kpz15l3yz26s2kskxk4093313c7vwi131y24wbpcdahicpqys2m"; depends=[annotate BiocGenerics Biostrings DBI GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 GO_db IRanges KEGGREST poweRlaw R_utils readr reshape2 RSQLite rtracklayer S4Vectors XVector]; }; + CNORdt = derive2 { name="CNORdt"; version="1.44.0"; sha256="03kc07ji829drirgc1gfw2spkpj8rc16r0by8l392hqrdyl5xxwc"; depends=[abind CellNOptR]; }; + CNORfeeder = derive2 { name="CNORfeeder"; version="1.42.0"; sha256="0qg1wxyykdmi3dspxb4s9sb3rp0hzhqg1aq4fvwfk827740y1fb1"; depends=[CellNOptR graph]; }; + CNORfuzzy = derive2 { name="CNORfuzzy"; version="1.44.0"; sha256="1mbhr078i20rf3222lpr5ijiy07pp07c4larfnm0zrdv7wabij87"; depends=[CellNOptR nloptr]; }; + CNORode = derive2 { name="CNORode"; version="1.44.0"; sha256="0dmxhmvv2nyhwhjslwlhaf29fy5yl8f6q84cc2zaf41milx0avl7"; depends=[CellNOptR genalg knitr]; }; + CNTools = derive2 { name="CNTools"; version="1.58.0"; sha256="1jv46vrbqj2z6b6q5psbwh32sidaraklhnz6n3iqhmhs4dyf67g4"; depends=[genefilter]; }; + CNVMetrics = derive2 { name="CNVMetrics"; version="1.6.0"; sha256="16n44dc6dnzv9z6nag5zp6pajvwnr2plprcy73i6lwmmg7w89nwm"; depends=[BiocParallel GenomicRanges gridExtra IRanges magrittr pheatmap rBeta2009 S4Vectors]; }; + CNVPanelizer = derive2 { name="CNVPanelizer"; version="1.34.0"; sha256="15h8pkgp6g6sbiyk4q53s36w7szms66pa1hj2z32rhn4ys07indn"; depends=[BiocGenerics exomeCopy foreach GenomeInfoDb GenomicRanges ggplot2 gplots IRanges NOISeq openxlsx plyr reshape2 Rsamtools S4Vectors shiny shinyFiles shinyjs stringr testthat]; }; + CNVRanger = derive2 { name="CNVRanger"; version="1.18.0"; sha256="0nhd7aylygy0j7zzv4r8rx0sp5q4ihsx29cs53jhj3wqg6q3g9mz"; depends=[BiocGenerics BiocParallel data_table edgeR GDSArray gdsfmt GenomeInfoDb GenomicRanges IRanges lattice limma plyr qqman RaggedExperiment rappdirs reshape2 S4Vectors SNPRelate SummarizedExperiment]; }; + CNVfilteR = derive2 { name="CNVfilteR"; version="1.16.0"; sha256="1ggsy5l81w67544qg2w1i8k6ahyxmmml9xwl8216aqhhh5dz19ba"; depends=[assertthat Biostrings CopyNumberPlots GenomeInfoDb GenomicRanges IRanges karyoploteR pracma regioneR Rsamtools SummarizedExperiment VariantAnnotation]; }; + CNViz = derive2 { name="CNViz"; version="1.10.0"; sha256="0wxavpmjljvrw5vxwnylxw9q85p48qa8zyz4i2ac77gd34777dls"; depends=[CopyNumberPlots dplyr DT GenomicRanges karyoploteR magrittr plotly scales shiny]; }; + CNVrd2 = derive2 { name="CNVrd2"; version="1.40.0"; sha256="0a67rngcar0zlr71jzi6hfwk51x31x5aff9px1v6fmzmiazhppnn"; depends=[DNAcopy ggplot2 gridExtra IRanges rjags Rsamtools VariantAnnotation]; }; + COCOA = derive2 { name="COCOA"; version="2.16.0"; sha256="0j52y22q8kmqvji7lls6x767qb066a28xvpwlj473041xv0nyqjh"; depends=[Biobase BiocGenerics ComplexHeatmap data_table fitdistrplus GenomicRanges ggplot2 IRanges MIRA S4Vectors simpleCache tidyr]; }; + CODEX = derive2 { name="CODEX"; version="1.34.0"; sha256="0gliqm2xsh67b9pgfyxca6wqwbfwvwdn6wmj20js62wcf4ql1f2x"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb IRanges Rsamtools S4Vectors]; }; + COHCAP = derive2 { name="COHCAP"; version="1.48.0"; sha256="1czbmjmrldp4xwf2pi542aqxxgjg34bvky716fjf5y3zxp4j5pnd"; depends=[BH COHCAPanno gplots RColorBrewer Rcpp RcppArmadillo WriteXLS]; }; + COMPASS = derive2 { name="COMPASS"; version="1.40.0"; sha256="1a7f6jsp4r7z49mskbfdshngqwmjqs0bp3skbnbkzfqfb8mh7gl1"; depends=[abind BiocStyle clue coda data_table dplyr foreach knitr magrittr pdist plyr RColorBrewer Rcpp reshape2 rlang rmarkdown scales tidyr]; }; + CONFESS = derive2 { name="CONFESS"; version="1.30.0"; sha256="07llqgib7aqqn5m1zkmydh7cd9zpcskh87196079gssiyk8yd3w2"; depends=[changepoint cluster contrast data_table EBImage ecp flexmix flowClust flowCore flowMeans flowMerge flowPeaks foreach ggplot2 limma MASS moments outliers plotrix raster readbitmap reshape2 SamSPECTRAL waveslim wavethresh zoo]; }; + CONSTANd = derive2 { name="CONSTANd"; version="1.10.0"; sha256="0q0yskigdadjnhjfwsjmi84cp4w3jax7r3wddpswkahb42z86l6r"; depends=[]; }; + CORREP = derive2 { name="CORREP"; version="1.68.0"; sha256="1ida60gpbkr5iyn74y6df8gd0znjkzbidyi7sz4my47fw4j8wrin"; depends=[e1071]; }; + COSNet = derive2 { name="COSNet"; version="1.36.0"; sha256="1w6j2ybqvrh750af924pbw13x93fm8q035skbv088abpj8hxh72n"; depends=[]; }; + COTAN = derive2 { name="COTAN"; version="2.2.3"; sha256="12q5qcxa9qrykwqdl83c2bkg2y732qaw1fxb55fdh62l53xr2352"; depends=[assertthat BiocSingular circlize ComplexHeatmap dendextend dplyr ggplot2 ggrepel ggthemes Matrix parallelDist parallelly PCAtools plyr RColorBrewer Rfast rlang scales Seurat stringr tibble tidyr umap withr zeallot]; }; + CRISPRseek = derive2 { name="CRISPRseek"; version="1.42.0"; sha256="0dlcjqsl2agpd855jlnkdw8rljhc0f7lpn0qixy0vh2xyd38d3bv"; depends=[BiocGenerics Biostrings BSgenome data_table DelayedArray dplyr GenomeInfoDb GenomicRanges hash IRanges keras mltools reticulate rhdf5 S4Vectors seqinr XVector]; }; + CRImage = derive2 { name="CRImage"; version="1.50.0"; sha256="0yvl7lb6l6sy5i8s82j2gm79fi160dpvhvsg0p725a1d8jvgjxic"; depends=[aCGH DNAcopy e1071 EBImage foreach MASS sgeostat]; }; + CSAR = derive2 { name="CSAR"; version="1.54.0"; sha256="1i6mp2i1dx73pz4cibakdlffbwnagnm3jrx7v6dg5jdghqp9mnhn"; depends=[GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + CSSQ = derive2 { name="CSSQ"; version="1.14.0"; sha256="0n4ar1g9s127iqxxsh0f551y9rc9f9sa1y6lrwdbwyd94j44m3in"; depends=[GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; + CTDquerier = derive2 { name="CTDquerier"; version="2.10.0"; sha256="1p00dxjkij8fp1x1ywp4s5gb1qqmxwpj790akf2ym9p3axcysmiq"; depends=[BiocFileCache ggplot2 gridExtra igraph RCurl S4Vectors stringdist stringr]; }; + CTSV = derive2 { name="CTSV"; version="1.4.0"; sha256="00nc3zk07719fz0s4ji8yp79jcs18qpdq99s5kjks2gsfcs31ay9"; depends=[BiocParallel knitr pscl qvalue SpatialExperiment SummarizedExperiment]; }; + CTdata = derive2 { name="CTdata"; version="1.2.0"; sha256="1gf5n85b9srdnj2nc0aqn8j6zjhhbvdn2k11im23f19vz6msvzw6"; depends=[ExperimentHub]; }; + CaDrA = derive2 { name="CaDrA"; version="1.0.1"; sha256="1c6hbl9if0davkf42cpbg3wzx69xvgx3rkwyj2w2da9kgi2m6jml"; depends=[doParallel ggplot2 gplots gtable MASS misc3d plyr ppcor R_cache reshape2 SummarizedExperiment]; }; + Cardinal = derive2 { name="Cardinal"; version="3.4.3"; sha256="0zn0as9nm4xl765qy76snl61vdzdl4ib5q2ca9bvg76m5km6hip1"; depends=[Biobase BiocGenerics BiocParallel CardinalIO EBImage irlba magrittr Matrix matter mclust nlme ProtGenerics S4Vectors signal viridisLite]; }; + CardinalIO = derive2 { name="CardinalIO"; version="1.0.0"; sha256="0krx56cs2b73wpkp99y019ix2maa44bwpxw5qx2i86qj3c89lmn6"; depends=[matter ontologyIndex S4Vectors]; }; + Category = derive2 { name="Category"; version="2.68.0"; sha256="19qyxqky1gsrjylmc2h0sndbqlk2ibrps7123gqwn19p8kg4nhf0"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI genefilter graph GSEABase Matrix RBGL]; }; + CausalR = derive2 { name="CausalR"; version="1.34.0"; sha256="18g4z9jwbxay29fyd25dhl7bbrns3sfbn2fczcwm8q6nwqdpj93v"; depends=[igraph]; }; + CeTF = derive2 { name="CeTF"; version="1.14.0"; sha256="11s0mdwn7d1k9kjwj4l3a2l3l5v1bihqfngfmg25sw7h57gacl6j"; depends=[circlize clusterProfiler ComplexHeatmap DESeq2 dplyr GenomicTools_fileHandler GGally ggnetwork ggplot2 ggpubr ggrepel igraph Matrix network Rcpp RcppArmadillo RCy3 S4Vectors SummarizedExperiment]; }; + CellBarcode = derive2 { name="CellBarcode"; version="1.8.0"; sha256="1dcsavfvaljjnzqva5d5hhbp9q5dcx76zjfliksif783ia5srdwp"; depends=[BH Biostrings Ckmeans_1d_dp data_table egg ggplot2 magrittr plyr Rcpp S4Vectors seqinr ShortRead stringr zlibbioc]; }; + CellBench = derive2 { name="CellBench"; version="1.18.0"; sha256="18q0qyc1k5d48vyhfzby8mz59ha5xl3mgflp6d7rdwv02340cipn"; depends=[assertthat BiocFileCache BiocGenerics BiocParallel dplyr glue lubridate magrittr memoise purrr rappdirs rlang SingleCellExperiment tibble tidyr tidyselect]; }; + CellMapper = derive2 { name="CellMapper"; version="1.28.0"; sha256="1ra9kw0waq5vn4hdzz3rpcy5vrd6k35m474r827a0j2avsmhgvwv"; depends=[S4Vectors]; }; + CellMixS = derive2 { name="CellMixS"; version="1.18.0"; sha256="0dimxhhk96lzrsi52ppgd7p6rcip81cjwzynlk6afgd2f0da45p4"; depends=[BiocGenerics BiocNeighbors BiocParallel cowplot dplyr ggplot2 ggridges kSamples magrittr purrr scater SingleCellExperiment SummarizedExperiment tidyr viridis]; }; + CellNOptR = derive2 { name="CellNOptR"; version="1.48.0"; sha256="015k6jn12svxfdxsw9zmdsjsa74yv8dqg0pp4pvdsqs9q13jlc14"; depends=[ggplot2 graph igraph RBGL RCurl Rgraphviz rmarkdown stringi stringr XML]; }; + CellScore = derive2 { name="CellScore"; version="1.22.0"; sha256="0sjh00gv71vnvwl9lvha2kpbqcfyvbgfxxdi5gwq9iln08mcl3sh"; depends=[Biobase gplots lsa RColorBrewer squash SummarizedExperiment]; }; + CellTrails = derive2 { name="CellTrails"; version="1.20.0"; sha256="1paqgvbkdmn2dacj392haassxhg3fx47srm6whgz3nlh26hvpimm"; depends=[Biobase BiocGenerics cba dendextend dtw EnvStats ggplot2 ggrepel igraph maptree mgcv reshape2 Rtsne SingleCellExperiment SummarizedExperiment]; }; + CellaRepertorium = derive2 { name="CellaRepertorium"; version="1.12.0"; sha256="0k9sxh0b9g2841zpkbmcc65v0kfyv1i6sxzdmbr49nzzm27xlbh2"; depends=[BiocGenerics Biostrings dplyr forcats generics glue Matrix progress purrr Rcpp reshape2 rlang S4Vectors stringr tibble tidyr]; }; + CelliD = derive2 { name="CelliD"; version="1.10.1"; sha256="13hwxhdp268h3n8d8wgr75i60apa9mama9bg049yz7c6mj5ixd1v"; depends=[BiocParallel data_table fastmatch fgsea ggplot2 glue irlba Matrix matrixStats pbapply Rcpp RcppArmadillo reticulate Rtsne scater Seurat SingleCellExperiment stringr SummarizedExperiment tictoc umap]; }; + Cepo = derive2 { name="Cepo"; version="1.8.0"; sha256="0s1zra4msgbp37r5lp0zs9j2aq054rcmrmhwi3liwp4wkvjbshw8"; depends=[BiocParallel DelayedArray DelayedMatrixStats dplyr ggplot2 GSEABase HDF5Array patchwork reshape2 rlang S4Vectors SingleCellExperiment SummarizedExperiment]; }; + CexoR = derive2 { name="CexoR"; version="1.40.0"; sha256="0rfb4vmgmk608l5kd9yxfny87krc2sc79rww0sh9cbcw5yicsr64"; depends=[genomation GenomeInfoDb GenomicRanges idr IRanges RColorBrewer Rsamtools rtracklayer S4Vectors]; }; + ChAMP = derive2 { name="ChAMP"; version="2.32.0"; sha256="1gdcdx34bxffd6ch354qx7yjngx3lj9chv5frwjyk56jq12vjjk7"; depends=[bumphunter ChAMPdata combinat dendextend DMRcate DNAcopy doParallel DT GenomicRanges ggplot2 globaltest goseq Hmisc Illumina450ProbeVariants_db IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b4_hg19 IlluminaHumanMethylationEPICmanifest illuminaio impute isva kpmt limma marray matrixStats minfi missMethyl plotly plyr preprocessCore prettydoc quadprog qvalue RColorBrewer rmarkdown RPMM shiny shinythemes sva wateRmelon]; }; + ChIPComp = derive2 { name="ChIPComp"; version="1.32.0"; sha256="061d2z1rrcyad6cf19si14ab9a3dxdi17sfbkx3vx8kdsfs3djy9"; depends=[BiocGenerics BSgenome_Hsapiens_UCSC_hg19 BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicRanges IRanges limma Rsamtools rtracklayer S4Vectors]; }; + ChIPQC = derive2 { name="ChIPQC"; version="1.38.0"; sha256="0a4kx2s2hyqs061550klfafkzk68563wbgyk4xihxaihdh03qghj"; depends=[Biobase BiocGenerics BiocParallel chipseq DiffBind GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gtools IRanges Nozzle_R1 reshape2 Rsamtools S4Vectors TxDb_Celegans_UCSC_ce6_ensGene TxDb_Dmelanogaster_UCSC_dm3_ensGene TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene TxDb_Rnorvegicus_UCSC_rn4_ensGene]; }; + ChIPXpress = derive2 { name="ChIPXpress"; version="1.46.0"; sha256="042jc6vz44pcr7pm44byk8mc7vzf7w42nnms9ckd9ayzwb0w8q25"; depends=[affy biganalytics bigmemory Biobase ChIPXpressData frma GEOquery]; }; + ChIPanalyser = derive2 { name="ChIPanalyser"; version="1.24.0"; sha256="1janbfc51pyrj89k10fmhxlx3zh8bscl83d0yj9pdpzkmsks248v"; depends=[BiocManager Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges RColorBrewer RcppRoll ROCR rtracklayer S4Vectors]; }; + ChIPexoQual = derive2 { name="ChIPexoQual"; version="1.26.0"; sha256="04dhkm8cq87x3c9f114z6q1pcw77xgs33rmhgzk4ajzxywhklq4j"; depends=[BiocParallel biovizBase broom data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 hexbin IRanges RColorBrewer rmarkdown Rsamtools S4Vectors scales viridis]; }; + ChIPpeakAnno = derive2 { name="ChIPpeakAnno"; version="3.36.0"; sha256="012hhakhk81qk1hi4igfa4vji678gmyvdxi05z9mdsx721lwwy2i"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings DBI dplyr ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 graph InteractionSet IRanges KEGGREST matrixStats multtest RBGL regioneR Rsamtools rtracklayer S4Vectors SummarizedExperiment VennDiagram]; }; + ChIPseeker = derive2 { name="ChIPseeker"; version="1.38.0"; sha256="0bx85y5888w85miif73y0yd9j4kdmjn1cfck1xshnqnsrh7p3m50"; depends=[AnnotationDbi aplot BiocGenerics boot dplyr enrichplot GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gplots gtools IRanges magrittr plotrix rtracklayer S4Vectors tibble TxDb_Hsapiens_UCSC_hg19_knownGene yulab_utils]; }; + ChIPseqR = derive2 { name="ChIPseqR"; version="1.56.0"; sha256="1m1x2v2wzmnqnl55wy2ky4f8p4fyynk1ffz82m5rnbm3265j6whn"; depends=[BiocGenerics Biostrings fBasics GenomicRanges HilbertVis IRanges S4Vectors ShortRead timsac]; }; + ChIPsim = derive2 { name="ChIPsim"; version="1.56.0"; sha256="0y5fy34rhxqbyhh27bkkzhgc49c2iy48qm4bggwzcwmrlcfh1ydx"; depends=[Biostrings IRanges ShortRead XVector]; }; + ChemmineOB = derive2 { name="ChemmineOB"; version="1.40.0"; sha256="0mfajzwzldmra6g5kni5yw7m2n719456p1vd3hxx2r7l1phdjixi"; depends=[BH BiocGenerics Rcpp zlibbioc]; }; + ChemmineR = derive2 { name="ChemmineR"; version="3.54.0"; sha256="1328mwmghflrvir1i3crlq8q36wq60x2an11saabg63hnx4paa81"; depends=[base64enc BH BiocGenerics DBI digest DT ggplot2 gridExtra jsonlite png Rcpp RCurl rjson rsvg stringi]; }; + Chicago = derive2 { name="Chicago"; version="1.30.0"; sha256="1mcpx785ag0jcsh08df34hx3wp55zd1vggnl3fflkinb78178n38"; depends=[data_table Delaporte Hmisc MASS matrixStats]; }; + ChromHeatMap = derive2 { name="ChromHeatMap"; version="1.56.0"; sha256="0zbpy4cxpgn6lcx413315jy00rmssdgk7rbyxr5sqraj82kamcbw"; depends=[annotate AnnotationDbi Biobase BiocGenerics GenomicRanges IRanges rtracklayer]; }; + ChromSCape = derive2 { name="ChromSCape"; version="1.12.0"; sha256="1cgq33shlx105h8xcjif6vz4qw91r1c82fw26nnrpbl5z070vq3l"; depends=[batchelor BiocParallel colorRamps colourpicker ConsensusClusterPlus coop DelayedArray dplyr DT edgeR forcats fs GenomicRanges gggenes ggplot2 ggrepel gridExtra IRanges irlba jsonlite kableExtra Matrix matrixTests msigdbr plotly qs qualV Rcpp rlist Rsamtools rtracklayer Rtsne S4Vectors scater scran shiny shinycssloaders shinydashboard shinydashboardPlus shinyFiles shinyhelper shinyjs shinyWidgets SingleCellExperiment stringdist stringr SummarizedExperiment tibble tidyr umap viridis]; }; + CircSeqAlignTk = derive2 { name="CircSeqAlignTk"; version="1.4.0"; sha256="0p129nsshb4xahicsyfbpc5w1v6n68xppfl39yxg61ndd15324rm"; depends=[BiocGenerics Biostrings dplyr ggplot2 IRanges magrittr Rbowtie2 Rhisat2 rlang Rsamtools S4Vectors ShortRead tidyr]; }; + CiteFuse = derive2 { name="CiteFuse"; version="1.14.0"; sha256="1jymchrl107b50q6kn5kfa3js9c8s667p2y0zh2q4y21b6n3v3id"; depends=[compositions cowplot dbscan ggplot2 ggraph ggridges gridExtra igraph Matrix mixtools pheatmap randomForest Rcpp reshape2 rhdf5 rlang Rtsne S4Vectors scales scran SingleCellExperiment SummarizedExperiment uwot]; }; + ClassifyR = derive2 { name="ClassifyR"; version="3.6.2"; sha256="1i3yqy2vl1qpzpk1nvdnimgmirv73hsg5y21g4lnv8hial31gs7y"; depends=[BiocParallel dplyr genefilter generics ggplot2 ggpubr ggupset MultiAssayExperiment ranger reshape2 rlang S4Vectors survival tidyr]; }; + Clomial = derive2 { name="Clomial"; version="1.38.0"; sha256="1z4cv68cdvqx1z8n8wgr74pdrbgqcm968qk7l8dv0za0164ala23"; depends=[matrixStats permute]; }; + CluMSID = derive2 { name="CluMSID"; version="1.18.0"; sha256="0iy53ccvwwgg58b16z0haw3yxcg62hfshx9dlkcxmr75i2v1zrpy"; depends=[ape Biobase dbscan GGally ggplot2 gplots MSnbase mzR network plotly RColorBrewer S4Vectors sna]; }; + ClustIRR = derive2 { name="ClustIRR"; version="1.0.0"; sha256="1rxq6pqpfxghf7n8l4qcq605iss9axk168bb8y8ycwfixs42fk7m"; depends=[future future_apply igraph stringdist visNetwork]; }; + ClusterJudge = derive2 { name="ClusterJudge"; version="1.24.0"; sha256="1g5r281dcqqr7rsk6xfj53fc9qqa15aiz4cxiyx92jq3a432kwl9"; depends=[httr infotheo jsonlite lattice latticeExtra]; }; + ClusterSignificance = derive2 { name="ClusterSignificance"; version="1.30.0"; sha256="1jyw2b6m9zvzsvd82iq75ifqfdl5xxbi4xqx5wn99pqwj72y4094"; depends=[pracma princurve RColorBrewer scatterplot3d]; }; + CoCiteStats = derive2 { name="CoCiteStats"; version="1.74.0"; sha256="18ddqwxj16wnwnvc187281a2vhxg63hm2rlq0dx0whzwmdrpm83l"; depends=[AnnotationDbi org_Hs_eg_db]; }; + CoGAPS = derive2 { name="CoGAPS"; version="3.22.0"; sha256="0zsilwawwngnl5cahvcmvhgkcnjqplr3b4711zkjdyhalzs4hr95"; depends=[BH BiocParallel biomaRt cluster dplyr fgsea forcats ggplot2 gplots msigdbr RColorBrewer Rcpp rhdf5 S4Vectors SingleCellExperiment SummarizedExperiment]; }; + CoSIA = derive2 { name="CoSIA"; version="1.2.0"; sha256="14d7l88346wkh4fj9y4f2lywfqbawz60z86f6wm2r2vh8zhcbk8i"; depends=[AnnotationDbi annotationTools biomaRt dplyr ExperimentHub ggplot2 homologene magrittr org_Ce_eg_db org_Dm_eg_db org_Dr_eg_db org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db plotly RColorBrewer readr stringr tibble tidyr tidyselect]; }; + Cogito = derive2 { name="Cogito"; version="1.8.0"; sha256="1c576f0hcsqva4vj6h1kgahl2srh11dlsmnpvcpmw9pjm3q0j1dd"; depends=[AnnotationDbi BiocManager entropy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 jsonlite magrittr rmarkdown S4Vectors TxDb_Mmusculus_UCSC_mm9_knownGene]; }; + ComPrAn = derive2 { name="ComPrAn"; version="1.10.0"; sha256="06waqsvxgp6aashqi74f66k0bpljm5x2xl7rmlbvzyyx51cd055k"; depends=[data_table dplyr DT forcats ggplot2 magrittr purrr RColorBrewer rio rlang scales shiny shinydashboard shinyjs stringr tibble tidyr VennDiagram]; }; + ComplexHeatmap = derive2 { name="ComplexHeatmap"; version="2.18.0"; sha256="0zzp0kci5daffpyv56advdcs05pz3nmjn07bmm7r3hwpk0nr3fcf"; depends=[circlize clue codetools colorspace digest doParallel foreach GetoptLong GlobalOptions IRanges matrixStats png RColorBrewer]; }; + CompoundDb = derive2 { name="CompoundDb"; version="1.6.0"; sha256="1fbh1wxrhsi759c5gh68grm4588vb2rgpvi5j891jlvi5wsm5g53"; depends=[AnnotationFilter Biobase BiocGenerics BiocParallel ChemmineR DBI dbplyr dplyr IRanges jsonlite MetaboCoreUtils MsCoreUtils ProtGenerics RSQLite S4Vectors Spectra tibble xml2]; }; + ConsensusClusterPlus = derive2 { name="ConsensusClusterPlus"; version="1.66.0"; sha256="11xcz9b4mg3inz8c8f2vckgai67s740qjyynjim4ahf9zd0j7rxs"; depends=[ALL Biobase cluster]; }; + CopyNumberPlots = derive2 { name="CopyNumberPlots"; version="1.18.0"; sha256="1sic65ws7bgww5zr56w9nan9wm60q238id6l0lhrzq6jadz6yc8s"; depends=[cn_mops GenomeInfoDb GenomicRanges IRanges karyoploteR regioneR rhdf5 Rsamtools SummarizedExperiment VariantAnnotation]; }; + CoreGx = derive2 { name="CoreGx"; version="2.6.0"; sha256="0ffbi5afw759mi5r657h67hdh9yr5jrzvl3aigp960jzb5542105"; depends=[bench Biobase BiocGenerics BiocParallel BumpyMatrix checkmate crayon data_table glue lsa MatrixGenerics MultiAssayExperiment piano rlang S4Vectors SummarizedExperiment]; }; + Cormotif = derive2 { name="Cormotif"; version="1.48.0"; sha256="1abyr210zhl1nl3xi6ayqmyx454qrsqz9bkb8i05xg29yxyj3awv"; depends=[affy limma]; }; + CoverageView = derive2 { name="CoverageView"; version="1.40.0"; sha256="1sj1vr84nsbygkh5mmp7zm21zzk4zcw3bwcvcazmy54zs553blpf"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; + CrispRVariants = derive2 { name="CrispRVariants"; version="1.30.0"; sha256="1bsvl0sn2frfddvy32m8a1dh6p9vfa3q0kkl3jx0il1igl4q5dfw"; depends=[AnnotationDbi BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges reshape2 Rsamtools S4Vectors]; }; + CuratedAtlasQueryR = derive2 { name="CuratedAtlasQueryR"; version="1.0.1"; sha256="0iqrf3fdimvldzsvm6yg2c6g5bk50hh2yihzcfawwxnr6y2r39yn"; depends=[assertthat BiocGenerics cli DBI dbplyr dplyr duckdb glue HDF5Array httr purrr rlang S4Vectors Seurat SeuratObject SingleCellExperiment stringr SummarizedExperiment tibble]; }; + CyTOFpower = derive2 { name="CyTOFpower"; version="1.8.0"; sha256="0mv1467mbfa9k1dylbnls6ql2zi8ky1a9xqxjxih69d0ylpvbc9i"; depends=[CytoGLMM diffcyt dplyr DT ggplot2 magrittr rlang shiny shinyFeedback shinyjs shinyMatrix SummarizedExperiment tibble tidyr]; }; + CytoDx = derive2 { name="CytoDx"; version="1.22.0"; sha256="18sb7jjdpdy6sl7snjg8qxwd1mlis9wlcyrbzd41x5nrljvb3sqd"; depends=[doParallel dplyr flowCore glmnet rpart rpart_plot]; }; + CytoGLMM = derive2 { name="CytoGLMM"; version="1.10.0"; sha256="0fwjjhc2554qawnds3v75wycwhzinbnmq208k4mcmh6gpnkpsqdr"; depends=[BiocParallel caret cowplot doParallel dplyr factoextra flexmix ggplot2 ggrepel logging magrittr MASS Matrix mbest pheatmap RColorBrewer rlang stringr strucchange tibble tidyr]; }; + CytoML = derive2 { name="CytoML"; version="2.14.0"; sha256="0wq9ganas6l2jw8bnajr7vwli35kykpgv2lca4qh79nfgxlicff9"; depends=[BH Biobase cpp11 cytolib data_table dplyr flowCore flowWorkspace ggcyto graph jsonlite openCyto RBGL Rgraphviz Rhdf5lib RProtoBufLib tibble XML yaml]; }; + CytoPipeline = derive2 { name="CytoPipeline"; version="1.2.0"; sha256="14jnlglc9sd5sdrrl66vymjpww10ilq29ws6jc2gii19arxzdhl0"; depends=[BiocFileCache BiocParallel diagram flowAI flowCore ggcyto ggplot2 jsonlite PeacoQC rlang scales withr]; }; + CytoPipelineGUI = derive2 { name="CytoPipelineGUI"; version="1.0.0"; sha256="09fr9830kwa3jrlr8m2svn4v68dn5p00d1i7gl8vm0xj36q6ii8q"; depends=[CytoPipeline flowCore ggplot2 plotly shiny]; }; + DAMEfinder = derive2 { name="DAMEfinder"; version="1.14.0"; sha256="0mbm884dm30b4fwf3qr1w96j18dxdmr2bn11dw83hh0wrbhp8njm"; depends=[BiocGenerics Biostrings bumphunter cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges limma plyr readr reshape2 Rsamtools S4Vectors stringr SummarizedExperiment VariantAnnotation]; }; + DAPAR = derive2 { name="DAPAR"; version="1.34.2"; sha256="1psdi4zmj93manzs9f8fm3rchdx4fa9irx68c91q4s502apkp4f4"; depends=[AnnotationDbi apcluster Biobase cluster clusterProfiler cp4p DAPARdata dendextend diptest doParallel dplyr factoextra FactoMineR forcats foreach ggplot2 gplots graph highcharter igraph imp4p impute knitr limma lme4 Matrix Mfuzz MSnbase multcomp norm openxlsx org_Sc_sgd_db preprocessCore purrr RColorBrewer readxl reshape2 scales stringr tibble tidyr tidyverse vioplot visNetwork vsn]; }; + DART = derive2 { name="DART"; version="1.50.0"; sha256="0730qa3viyhfgrl8p288isq4midmzb9nf8q60m5rrnk7maa2q8gf"; depends=[igraph]; }; + DCATS = derive2 { name="DCATS"; version="1.0.0"; sha256="0m77g0xa4v7vxgcxzj2g0nchii7a5cilbxs2ijp5m56wa2chi000"; depends=[aod e1071 matrixStats MCMCpack robustbase]; }; + DECIPHER = derive2 { name="DECIPHER"; version="2.30.0"; sha256="1ri8ldx3dqcpfvn3mz0022f77zi6ki04mh27qp132bbrjkj6zl79"; depends=[Biostrings DBI IRanges RSQLite S4Vectors XVector]; }; + DEFormats = derive2 { name="DEFormats"; version="1.30.0"; sha256="138kcpk6mfk7rw3xnlhvkrcb3nlpq0j2pgkhhmqnglvl1rbipf2f"; depends=[checkmate data_table DESeq2 edgeR GenomicRanges S4Vectors SummarizedExperiment]; }; + DEGraph = derive2 { name="DEGraph"; version="1.54.0"; sha256="1cxyh9xsf1w4f1vk63vpxz3kgbrhb6xfrzj2s4vxb751621ybf57"; depends=[graph KEGGgraph lattice mvtnorm NCIgraph R_methodsS3 R_utils RBGL Rgraphviz rrcov]; }; + DEGreport = derive2 { name="DEGreport"; version="1.38.5"; sha256="0s0d40ac1da73w7j96lb20wchgs4c2svfrafsgi9mx5hiswfz25z"; depends=[Biobase BiocGenerics broom circlize cluster ComplexHeatmap ConsensusClusterPlus cowplot dendextend DESeq2 dplyr edgeR ggdendro ggplot2 ggrepel knitr logging magrittr psych RColorBrewer reshape rlang S4Vectors scales stringi stringr SummarizedExperiment tibble tidyr]; }; + DEGseq = derive2 { name="DEGseq"; version="1.56.1"; sha256="0yk5shwp78s01570rd08w3hpdhhj9lnq37rhy6rxxpj696srri4j"; depends=[qvalue]; }; + DELocal = derive2 { name="DELocal"; version="1.2.0"; sha256="1hghgqb3ipbb7kd21k2xinbwmzcgdj0ys8s5qn98lkm4cqjszvq7"; depends=[DESeq2 dplyr ggplot2 limma matrixStats reshape2 SummarizedExperiment]; }; + DEP = derive2 { name="DEP"; version="1.24.0"; sha256="1c5xj1w1gqginp5m4n4pbfkp2f5mqmc96l6d43agvam9g626r4b5"; depends=[assertthat circlize cluster ComplexHeatmap dplyr DT fdrtool ggplot2 ggrepel gridExtra imputeLCMD limma MSnbase purrr RColorBrewer readr rmarkdown shiny shinydashboard SummarizedExperiment tibble tidyr vsn]; }; + DEScan2 = derive2 { name="DEScan2"; version="1.22.0"; sha256="0nzmg43vczv0dg3jpms0xw2lj7jw44r0gicm13fdikb9859iiraj"; depends=[BiocGenerics BiocParallel ChIPpeakAnno data_table DelayedArray GenomeInfoDb GenomicAlignments GenomicRanges glue IRanges plyr Rcpp RcppArmadillo rtracklayer S4Vectors SummarizedExperiment]; }; + DESeq2 = derive2 { name="DESeq2"; version="1.42.0"; sha256="1mz7v0vcl741zjvj63mk48hhbq6sk2fl2dwn9y1a6hr8fb79vy1a"; depends=[Biobase BiocGenerics BiocParallel GenomicRanges ggplot2 IRanges locfit MatrixGenerics matrixStats Rcpp RcppArmadillo S4Vectors SummarizedExperiment]; }; + DESpace = derive2 { name="DESpace"; version="1.2.0"; sha256="1619hg7fygk5562sz3xy54qr14rbqblyyb5rm26i1hxwh6dcwl0a"; depends=[assertthat BiocGenerics BiocParallel cowplot data_table dplyr edgeR ggforce ggnewscale ggplot2 ggpubr limma Matrix patchwork S4Vectors scales SpatialExperiment SummarizedExperiment]; }; + DEWSeq = derive2 { name="DEWSeq"; version="1.16.2"; sha256="0qhz616m69n72g6781zzn7ykbd03d8irnvcd3kg0aapzn725icy1"; depends=[BiocGenerics BiocParallel data_table DESeq2 GenomeInfoDb GenomicRanges R_utils S4Vectors SummarizedExperiment]; }; + DEXSeq = derive2 { name="DEXSeq"; version="1.48.0"; sha256="1q59agaidf0nkq599iz54a253sjxzillj39za86ihfj5xws24f8w"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel biomaRt DESeq2 genefilter geneplotter GenomicRanges hwriter IRanges RColorBrewer Rsamtools S4Vectors statmod stringr SummarizedExperiment]; }; + DEqMS = derive2 { name="DEqMS"; version="1.20.0"; sha256="1r4069jm5xjwgh7x4ysdmsablp38jbjj7yq1vab3r4zh1bpirjw5"; depends=[ggplot2 limma matrixStats]; }; + DEsingle = derive2 { name="DEsingle"; version="1.22.0"; sha256="0bfagw0nmzr7rfki2z78wgl5ikwzc143d3qlbcraci63lbm6ywb9"; depends=[bbmle BiocParallel gamlss MASS Matrix maxLik pscl VGAM]; }; + DEsubs = derive2 { name="DEsubs"; version="1.28.0"; sha256="1bdv9fbqgw9q5xc16xlac04j1xcmlqkp2703dg7cr9acy2dgh5q8"; depends=[circlize DESeq2 EBSeq edgeR ggplot2 graph igraph jsonlite limma locfit Matrix NBPSeq pheatmap RBGL]; }; + DExMA = derive2 { name="DExMA"; version="1.10.7"; sha256="12nvk3cfsxhkma9ypyndyd4i493x7h66nrx0lvniqs599a9x67yw"; depends=[Biobase bnstruct DExMAdata GEOquery impute limma pheatmap plyr RColorBrewer scales snpStats sva swamp]; }; + DFP = derive2 { name="DFP"; version="1.60.0"; sha256="1mnf92lg5daz4rf6ss2b3f923ybs6d3xyjz8plg0h8yfgm97yd0x"; depends=[Biobase]; }; + DIAlignR = derive2 { name="DIAlignR"; version="2.10.0"; sha256="1xqyksb8m67rwfxrz7gx5vjm0787ci94djpl236xf73a1xjp6xbq"; depends=[ape bit64 data_table DBI dplyr ggplot2 magrittr mzR phangorn pracma Rcpp RcppEigen reticulate rlang RMSNumpress RSQLite signal tidyr zoo]; }; + DMCHMM = derive2 { name="DMCHMM"; version="1.24.0"; sha256="1kw1n6zfxiafmvk1m0ap8jwp1ffp719j8lqf0dgpkjnj4apkl75f"; depends=[BiocParallel calibrate fdrtool GenomicRanges IRanges multcomp rtracklayer S4Vectors SummarizedExperiment]; }; + DMRScan = derive2 { name="DMRScan"; version="1.24.0"; sha256="04w30bxgpxhm40sal9np23vlzh4x7pihnnmzdk0lkbm1z7a60mbd"; depends=[GenomeInfoDb GenomicRanges IRanges MASS Matrix mvtnorm RcppRoll]; }; + DMRcaller = derive2 { name="DMRcaller"; version="1.34.0"; sha256="1zw9as8dmcadjpdh59a5ap7bli8jp1cg1rafmlpkmiibwdgpbnfm"; depends=[betareg GenomicRanges IRanges Rcpp RcppRoll S4Vectors]; }; + DMRcate = derive2 { name="DMRcate"; version="2.16.1"; sha256="19dxpmjjg8v2l71yjjlfj0ycvmhi9rk04q59nwjcp0aw8nvk6l3w"; depends=[biomaRt bsseq edgeR ExperimentHub GenomeInfoDb GenomicRanges Gviz IRanges limma minfi missMethyl plyr S4Vectors SummarizedExperiment]; }; + DNABarcodeCompatibility = derive2 { name="DNABarcodeCompatibility"; version="1.18.0"; sha256="0cj5d21l7zpp4sbkpxgph4q3n1pq3klg9xn8kn6hlm2h6i3j39g7"; depends=[DNABarcodes dplyr numbers purrr stringr tidyr]; }; + DNABarcodes = derive2 { name="DNABarcodes"; version="1.32.0"; sha256="12x4k55kshvwyzl83zkgkp0ylryr8wd3kz44ngp60k4pkwhkl9h9"; depends=[BH Matrix Rcpp]; }; + DNAcopy = derive2 { name="DNAcopy"; version="1.76.0"; sha256="0hyjin75v8l2a8qymsd6rjb8m7svv2q07s6z1dllqag09wja1yfz"; depends=[]; }; + DNAfusion = derive2 { name="DNAfusion"; version="1.4.0"; sha256="07921k8bjca4m0wfrn8q33pfvj5ivvmq6bvkwl1aq1n642k12zk8"; depends=[bamsignals BiocBaseUtils BiocGenerics GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools S4Vectors TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + DNAshapeR = derive2 { name="DNAshapeR"; version="1.30.0"; sha256="0jlfzq2na3hymqsi5ranj2aif7y48ry3zv7h8m9nzzq7sfr0vmnk"; depends=[Biostrings fields GenomicRanges Rcpp]; }; + DOSE = derive2 { name="DOSE"; version="3.28.2"; sha256="0kk4l8cxyvcq4cjjnb59zajf4ci0igml13582qqn8123cqkbf8pf"; depends=[AnnotationDbi BiocParallel fgsea ggplot2 GOSemSim HDO_db qvalue reshape2 yulab_utils]; }; + DRIMSeq = derive2 { name="DRIMSeq"; version="1.30.0"; sha256="1nf044cfqywfnglm081xbppamva87z2j2xz0f51z8mra11apj6i6"; depends=[BiocGenerics BiocParallel edgeR GenomicRanges ggplot2 IRanges limma MASS reshape2 S4Vectors]; }; + DTA = derive2 { name="DTA"; version="2.48.0"; sha256="1ymav0m09cmp54pl5ik67lwhn8k5fwvmplwvs2vy9falyqwrp1wj"; depends=[LSD scatterplot3d]; }; + DaMiRseq = derive2 { name="DaMiRseq"; version="2.14.0"; sha256="1mrslrvjf792dzajas4gfq2fir646lknrdg1wvhz513ww645kp38"; depends=[arm caret corrplot DESeq2 e1071 EDASeq edgeR FactoMineR FSelector ggplot2 Hmisc ineq kknn limma lubridate MASS pheatmap pls plsVarSel plyr randomForest RColorBrewer reshape2 RSNNS SummarizedExperiment sva]; }; + DeMAND = derive2 { name="DeMAND"; version="1.32.0"; sha256="05pczvfzakpbas3xh7igm1w27xf56mmpq72mav4pi5lhdj30w2hc"; depends=[KernSmooth]; }; + DeconRNASeq = derive2 { name="DeconRNASeq"; version="1.44.0"; sha256="1k5xrx97w9g0jfvjzawyfsqyz2fj9r463nj849djxgmcw8vp53vg"; depends=[ggplot2 limSolve pcaMethods]; }; + DeepBlueR = derive2 { name="DeepBlueR"; version="1.27.0"; sha256="03v1ag250zq8wj3fxnsg2ii8l93vq6dg9dxqyiqdjnbvxc0y26xg"; depends=[data_table diffr dplyr filehash foreach GenomeInfoDb GenomicRanges R_utils RCurl rjson rtracklayer settings stringr withr XML]; }; + DeepPINCS = derive2 { name="DeepPINCS"; version="1.10.0"; sha256="0xnqqv37h1k5ffhicqgxnqlwhi2cj8gakkgp04hlby4cjsfhd4a2"; depends=[CatEncoders keras matlab PRROC purrr rcdk reticulate stringdist tensorflow tokenizers ttgsea webchem]; }; + DegNorm = derive2 { name="DegNorm"; version="1.12.0"; sha256="1d2pdcfz4i94125cc35r0xsd1px718wh1910ixs0zlyzy032vpnz"; depends=[data_table doParallel foreach GenomicAlignments GenomicFeatures GenomicRanges ggplot2 heatmaply IRanges plotly plyr Rcpp RcppArmadillo Rsamtools S4Vectors viridis]; }; + DelayedArray = derive2 { name="DelayedArray"; version="0.28.0"; sha256="0mf30vdns64mpm11zcz9qx6nh5clr6krjvcmr7dqv2xg5ig0a1f7"; depends=[BiocGenerics IRanges Matrix MatrixGenerics S4Arrays S4Vectors SparseArray]; }; + DelayedDataFrame = derive2 { name="DelayedDataFrame"; version="1.18.0"; sha256="0hz1p2j3xqy08a6ja3sx4vp7yxbhxh29arh0ymnnvqnpf64lhxnb"; depends=[BiocGenerics DelayedArray S4Vectors]; }; + DelayedMatrixStats = derive2 { name="DelayedMatrixStats"; version="1.24.0"; sha256="18r5rfx46lac0kaakha4gqs4pj8vb39z0908gpclmp3ajca4hzb1"; depends=[DelayedArray IRanges Matrix MatrixGenerics S4Vectors sparseMatrixStats]; }; + DelayedRandomArray = derive2 { name="DelayedRandomArray"; version="1.10.0"; sha256="0ls464l4y8hzgxrjh1rxgzr3hzkc3m710m970lz83iyf7a6rsb6z"; depends=[BH DelayedArray dqrng Rcpp]; }; + DelayedTensor = derive2 { name="DelayedTensor"; version="1.8.0"; sha256="0fjvgvix0v5z8zkd0nzyvifkgq9p8706pk526ph42fsp7pfawxjf"; depends=[BiocSingular DelayedArray DelayedRandomArray einsum HDF5Array irlba Matrix rTensor]; }; + DepInfeR = derive2 { name="DepInfeR"; version="1.6.0"; sha256="0ad9q2k7vv11893kx8dxrx4ibixw5yfcyh7cxcf3x197gsik78mq"; depends=[BiocParallel glmnet matrixStats]; }; + DepecheR = derive2 { name="DepecheR"; version="1.18.0"; sha256="1b3c1wg5xnhh4bdcjls26j6nsp0vx1g5y3grqv7x4ds01vmh3q2w"; depends=[beanplot collapse doSNOW dplyr FNN foreach ggplot2 gmodels gplots MASS matrixStats mixOmics moments Rcpp RcppEigen reshape2 robustbase viridis]; }; + DiffBind = derive2 { name="DiffBind"; version="3.12.0"; sha256="1nlcx4fl1cpcg38cn9p55f75bv6pcg6h2jv4z94g2b7g1gwjd686"; depends=[amap apeglm ashr BiocParallel DESeq2 dplyr GenomicAlignments GenomicRanges ggplot2 ggrepel gplots GreyListChIP IRanges lattice limma locfit RColorBrewer Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment systemPipeR]; }; + DiffLogo = derive2 { name="DiffLogo"; version="2.26.0"; sha256="1il66knfk9b6a0n4zray6zzm49xzywi1snzb88d04mn0qi387nik"; depends=[cba]; }; + DifferentialRegulation = derive2 { name="DifferentialRegulation"; version="2.0.2"; sha256="0jf867alv1mn4gwpd4ypw96pkw627vzg74qsk6151m0q6hn24yq8"; depends=[BANDITS data_table doParallel doRNG foreach ggplot2 gridExtra MASS Matrix Rcpp RcppArmadillo SingleCellExperiment SummarizedExperiment tximport]; }; + Dino = derive2 { name="Dino"; version="1.8.0"; sha256="1px8ahrw3p7p21nmkjk0m3d0msifnsmxz17p4qqfjbfyx8j8y9yf"; depends=[BiocParallel BiocSingular Matrix matrixStats S4Vectors scran Seurat SingleCellExperiment SummarizedExperiment]; }; + Director = derive2 { name="Director"; version="1.28.0"; sha256="0q32s05xjksjbawd5kdh8hdhm0wdr9pg7crk0ip56f549rm7wqir"; depends=[htmltools]; }; + DirichletMultinomial = derive2 { name="DirichletMultinomial"; version="1.44.0"; sha256="1rvic3acrf4qdag423f8xa6bnqrqr31vj7k4l7a5kzf1fjm359wy"; depends=[BiocGenerics IRanges S4Vectors]; }; + DiscoRhythm = derive2 { name="DiscoRhythm"; version="1.18.0"; sha256="0vv2bhv081qm30iwf7mb23mzyxkmpr7qpxji8568jhxiqxx8xsyg"; depends=[BiocGenerics BiocStyle broom data_table dplyr DT ggExtra ggplot2 gridExtra heatmaply kableExtra knitr magick matrixStats matrixTests MetaCycle plotly reshape2 rmarkdown S4Vectors shiny shinyBS shinycssloaders shinydashboard shinyjs SummarizedExperiment UpSetR VennDiagram viridis zip]; }; + DominoEffect = derive2 { name="DominoEffect"; version="1.22.0"; sha256="00a7rc3q1pk626n5bk1f6ry9b7m44f5g5r29l2v8w7s8r3zfqvzh"; depends=[AnnotationDbi biomaRt Biostrings data_table GenomeInfoDb GenomicRanges IRanges SummarizedExperiment VariantAnnotation]; }; + Doscheda = derive2 { name="Doscheda"; version="1.24.0"; sha256="1hdqh4br4r57haw2zm4svv2akh0adfcb4lx2zichj0iv88sjnzl1"; depends=[affy calibrate corrgram drc DT ggplot2 gridExtra httr jsonlite limma matrixStats prodlim readxl reshape2 shiny shinydashboard stringr vsn]; }; + DriverNet = derive2 { name="DriverNet"; version="1.42.0"; sha256="1wna2jpilb3lhrz2f5py32ixm6wmda68a0abkc375dl92mxivfpf"; depends=[]; }; + DropletUtils = derive2 { name="DropletUtils"; version="1.22.0"; sha256="0bnxk72a0ygh4nqwyjzzi79zc4md8pwk0pr6jn43in0wdk054wf6"; depends=[beachmat BH BiocGenerics BiocParallel DelayedArray DelayedMatrixStats dqrng edgeR GenomicRanges HDF5Array IRanges Matrix R_utils Rcpp rhdf5 Rhdf5lib S4Vectors scuttle SingleCellExperiment SummarizedExperiment]; }; + DrugVsDisease = derive2 { name="DrugVsDisease"; version="2.44.0"; sha256="1g9i9r5bxvq1kk7vqx5jv4b61svxc1w0kh0fkjj3hbv8b1rh7aar"; depends=[affy annotate ArrayExpress BiocGenerics biomaRt cMap2data DrugVsDiseasedata GEOquery hgu133a_db hgu133a2_db hgu133plus2_db limma qvalue RUnit xtable]; }; + Dune = derive2 { name="Dune"; version="1.14.0"; sha256="1k0lp6sv8sml55dmhlzs4jnwvglc6dba7sn7w4j5h96d5bzav184"; depends=[aricode BiocParallel dplyr gganimate ggplot2 magrittr purrr RColorBrewer SummarizedExperiment tidyr]; }; + DynDoc = derive2 { name="DynDoc"; version="1.80.0"; sha256="0d2axaszy7rpi47yg4vhd1z70m53nx40znapgg5pq6ahrx7if5f1"; depends=[]; }; + EBImage = derive2 { name="EBImage"; version="4.44.0"; sha256="0jdi5cn4v5ll43xb3l6sy062snd5p9n2nrryc5aqd2ki18mdmghy"; depends=[abind BiocGenerics fftwtools htmltools htmlwidgets jpeg locfit png RCurl tiff]; }; + EBSEA = derive2 { name="EBSEA"; version="1.30.0"; sha256="1yasczqxx8vvh2h3nlnx99y0yyyyvv4qyfahs9c90yl5gk9xhwx3"; depends=[DESeq2 EmpiricalBrownsMethod]; }; + EBSeq = derive2 { name="EBSeq"; version="2.0.0"; sha256="07x9fh8akgiixsv1xddkvs2q8xxfsibas01kdx0kw6wak3nihn4w"; depends=[BH blockmodeling gplots Rcpp RcppEigen testthat]; }; + EBSeqHMM = derive2 { name="EBSeqHMM"; version="1.35.0"; sha256="1vgpda6h9caq67iqdd88mrhq8502jc056zf8fgwfgd8z9cayhsdn"; depends=[EBSeq]; }; + EBarrays = derive2 { name="EBarrays"; version="2.66.0"; sha256="1m8dy1lmx9m8p5jjk0i7yllb4pvq77kynszk1nz8cc1niz6xs47q"; depends=[Biobase cluster lattice]; }; + EBcoexpress = derive2 { name="EBcoexpress"; version="1.46.0"; sha256="0d8y193wpg8zi627bwl6dqbk3fdclfb8v9vsx9c0d6r1qldyrvqr"; depends=[EBarrays mclust minqa]; }; + EDASeq = derive2 { name="EDASeq"; version="2.36.0"; sha256="0xvi5mynkf1n74bn2k6gxmyhp1piwzsljd37biibdfzy14r1ir08"; depends=[AnnotationDbi aroma_light Biobase BiocGenerics BiocManager biomaRt Biostrings GenomicFeatures GenomicRanges IRanges Rsamtools ShortRead]; }; + EDIRquery = derive2 { name="EDIRquery"; version="1.2.0"; sha256="1qavmcr2a59b9bxqvvbqj37pr3iq7xmal51r7zc9cr4ya52ihqm7"; depends=[GenomicRanges InteractionSet readr tibble tictoc]; }; + EGAD = derive2 { name="EGAD"; version="1.30.0"; sha256="0j9vh489mrg1vl8hb8imppi1x5p0lmys1xi445x2l1ar93fr6f55"; depends=[Biobase GEOquery gplots igraph impute limma MASS plyr RColorBrewer RCurl zoo]; }; + ELMER = derive2 { name="ELMER"; version="2.26.0"; sha256="0xx2hh4jj2bg951agf90s4a4p3i5qbmrysn6h0dy5269vclzwcwh"; depends=[biomaRt circlize ComplexHeatmap DelayedArray doParallel downloader dplyr ELMER_data GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggpubr ggrepel gridExtra Gviz IRanges lattice magrittr Matrix MultiAssayExperiment plotly plyr progress purrr readr reshape reshape2 rmarkdown rtracklayer rvest S4Vectors scales stringr SummarizedExperiment TCGAbiolinks tibble tidyr xml2]; }; + EMDomics = derive2 { name="EMDomics"; version="2.32.0"; sha256="152rhw499kkv8pzl4i5d0zmkprjzkqj4n36fxsq6n6b5kxigp56j"; depends=[BiocParallel CDFt emdist ggplot2 matrixStats preprocessCore]; }; + ENmix = derive2 { name="ENmix"; version="1.38.01"; sha256="1wh9lri9dp3904c2n6562z7p9gqx39dmag55imx8zrqnayxamc03"; depends=[AnnotationHub Biobase doParallel dynamicTreeCut ExperimentHub foreach genefilter geneplotter gplots gtools illuminaio impute IRanges irlba matrixStats minfi quadprog RPMM S4Vectors SummarizedExperiment]; }; + ERSSA = derive2 { name="ERSSA"; version="1.20.0"; sha256="1ipzxlv454nykff3cn84fp7awv1iv92hb227570rn16kqj8j0pln"; depends=[apeglm BiocParallel DESeq2 edgeR ggplot2 plyr RColorBrewer]; }; + EWCE = derive2 { name="EWCE"; version="1.10.2"; sha256="0gnmq9f58idw9jlcyqfri98kdm0jqi3gmqzc90bqda49mj34ynn7"; depends=[BiocParallel data_table DelayedArray dplyr ewceData ggplot2 HGNChelper limma Matrix orthogene reshape2 RNOmni SingleCellExperiment stringr SummarizedExperiment]; }; + EmpiricalBrownsMethod = derive2 { name="EmpiricalBrownsMethod"; version="1.30.0"; sha256="03rs0i1m4qrjmv1xscwa6va7vyixghgbrwsbmnj5ri5bcwppjv7g"; depends=[]; }; + EnMCB = derive2 { name="EnMCB"; version="1.14.0"; sha256="18xb943r7szyrgfn8dcq9ajfp465vsz0l32sdy1wclkb9i77jmr7"; depends=[BiocFileCache boot e1071 ggplot2 glmnet igraph Matrix mboost rms survival survivalROC survivalsvm]; }; + EnhancedVolcano = derive2 { name="EnhancedVolcano"; version="1.20.0"; sha256="097w3957m47m03iy8xc1m7pdgm3qy0kzqbllic8pd79qglrla802"; depends=[ggplot2 ggrepel]; }; + EnrichedHeatmap = derive2 { name="EnrichedHeatmap"; version="1.32.0"; sha256="0j87x26qimsx4gi311bm1g9bldwq9r4z3aflxf8p91zlavjbv8zp"; depends=[circlize ComplexHeatmap GenomicRanges GetoptLong IRanges locfit matrixStats Rcpp]; }; + EnrichmentBrowser = derive2 { name="EnrichmentBrowser"; version="2.32.0"; sha256="1lvk6l9phsxsyhbdq389yj4x4vx0p5yq0nv59i02mvj6cd4n1yq4"; depends=[AnnotationDbi BiocFileCache BiocManager edgeR GO_db graph graphite GSEABase hwriter KEGGgraph KEGGREST limma pathview Rgraphviz S4Vectors safe SPIA SummarizedExperiment]; }; + EpiDISH = derive2 { name="EpiDISH"; version="2.18.0"; sha256="170ym3y6gd1kxghz2g5ynvgi1wrxx87b568cjcvzidpqkrkg87s6"; depends=[e1071 locfdr MASS Matrix matrixStats quadprog stringr]; }; + EpiMix = derive2 { name="EpiMix"; version="1.4.0"; sha256="1yrhc4nk95racnddxfyp98v543hdakqmiy9z9a83hfdr8bln8hq1"; depends=[AnnotationDbi AnnotationHub Biobase biomaRt data_table doParallel doSNOW downloader dplyr ELMER_data EpiMix_data ExperimentHub foreach GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 impute IRanges limma plyr progress R_matlab RColorBrewer RCurl rlang RPMM S4Vectors SummarizedExperiment tibble tidyr]; }; + EpiTxDb = derive2 { name="EpiTxDb"; version="1.14.0"; sha256="07rymnrhs8gnacylgg6lc506m8p5w7kghzz72i4gysanv1z39g95"; depends=[AnnotationDbi BiocFileCache BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges httr IRanges Modstrings RSQLite S4Vectors tRNAdbImport xml2]; }; + EventPointer = derive2 { name="EventPointer"; version="3.10.0"; sha256="15v2dbbllsy33hypsgcwcldm7m0bf282l4pwfsvm14v8mv4nv7p4"; depends=[abind affxparser Biostrings BSgenome cobs doParallel fgsea foreach GenomeInfoDb GenomicFeatures GenomicRanges glmnet graph igraph IRanges iterators limma lpSolve MASS Matrix matrixStats nnls poibin prodlim qvalue RBGL rhdf5 S4Vectors SGSeq speedglm stringr SummarizedExperiment tximport]; }; + ExCluster = derive2 { name="ExCluster"; version="1.20.0"; sha256="0wfyfl4bvh6v993w76jxaicnsdvllhcnjv0z93ljlimj988mpxdl"; depends=[GenomicRanges IRanges matrixStats Rsubread rtracklayer]; }; + ExiMiR = derive2 { name="ExiMiR"; version="2.44.0"; sha256="0wk6wz123590b4mf0kf7g3cf0mkb74hhiwpqgsywc2sgs75n2b8h"; depends=[affy affyio Biobase limma preprocessCore]; }; + ExperimentHub = derive2 { name="ExperimentHub"; version="2.10.0"; sha256="1prl24sg5l142155z3iaxrvig2wv2xqajq02nj30jjjih4p4936w"; depends=[AnnotationHub BiocFileCache BiocGenerics BiocManager rappdirs S4Vectors]; }; + ExperimentHubData = derive2 { name="ExperimentHubData"; version="1.28.0"; sha256="0msg3wpz1ppvwc4dsm9bz9h4y4hz67xr1xwp4vv4100sg0i5v9jn"; depends=[AnnotationHubData BiocGenerics BiocManager curl DBI ExperimentHub httr S4Vectors]; }; + ExperimentSubset = derive2 { name="ExperimentSubset"; version="1.12.0"; sha256="0andnybl0yfg53v4j865rjjy1s9l3hnwvkapdz0ixmi87bwxnshw"; depends=[Matrix S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment TreeSummarizedExperiment]; }; + ExploreModelMatrix = derive2 { name="ExploreModelMatrix"; version="1.14.0"; sha256="131ic20k6x27pziy3gdvjmrhdsxrslas6a6z4qwhjqg4ff8vz4r3"; depends=[cowplot dplyr DT ggplot2 limma magrittr MASS rintrojs S4Vectors scales shiny shinydashboard shinyjs tibble tidyr]; }; + ExpressionAtlas = derive2 { name="ExpressionAtlas"; version="1.30.0"; sha256="1rrzz4m5ldawmd70j6cx6ihca6blkjixif1hdyfb475d0kbqwshh"; depends=[Biobase BiocStyle httr jsonlite limma RCurl S4Vectors SummarizedExperiment XML xml2]; }; + FEAST = derive2 { name="FEAST"; version="1.10.0"; sha256="1makgf3djjl0k0wz26krgwghk829xly04kqa230kr212ch0z5r76"; depends=[BiocParallel irlba matrixStats mclust SC3 SingleCellExperiment SummarizedExperiment TSCAN]; }; + FELLA = derive2 { name="FELLA"; version="1.22.0"; sha256="0dmjv7yv7fxh3yssdpfmq4kkh9lhh7lmxaxky1klxmh26x7c0972"; depends=[igraph KEGGREST Matrix plyr]; }; + FGNet = derive2 { name="FGNet"; version="3.36.0"; sha256="1s8j49mzr1ljy8g3ph17v0pkrdkj9sm3292dhm2y6adac8fhdkhp"; depends=[hwriter igraph plotrix png R_utils RColorBrewer reshape2 XML]; }; + FISHalyseR = derive2 { name="FISHalyseR"; version="1.36.0"; sha256="1y8gsgd0jzc98mhnrx1xwxpqsdwm43l13fr9c7nxrh6c90rxq6i7"; depends=[abind EBImage]; }; + FLAMES = derive2 { name="FLAMES"; version="1.8.0"; sha256="0937zag0h4bvpapld267s5gz36h8zgjrgvbng9m7czdd8w6064ns"; depends=[bambu basilisk BiocGenerics Biostrings circlize ComplexHeatmap cowplot dplyr DropletUtils future GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 gridExtra igraph jsonlite magrittr Matrix MultiAssayExperiment RColorBrewer Rcpp reticulate Rhtslib Rsamtools rtracklayer S4Vectors scater scran scuttle SingleCellExperiment stringr SummarizedExperiment tidyr withr zlibbioc]; }; + FRASER = derive2 { name="FRASER"; version="1.14.0"; sha256="1v64ija7yrwz1wl2cghzgm3qd0d6q5vbz816ah761qlx61d72v8n"; depends=[AnnotationDbi BBmisc Biobase BiocGenerics BiocParallel biomaRt BSgenome cowplot data_table DelayedArray DelayedMatrixStats extraDistr generics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel HDF5Array IRanges matrixStats OUTRIDER pcaMethods pheatmap plotly PRROC R_utils RColorBrewer Rcpp RcppArmadillo rhdf5 Rsamtools Rsubread S4Vectors SummarizedExperiment tibble VGAM]; }; + FRGEpistasis = derive2 { name="FRGEpistasis"; version="1.38.0"; sha256="1rmr91916v5x3c2k3cl4kpzicgrqrb62ws355w4k3gnldki84c72"; depends=[fda MASS]; }; + FamAgg = derive2 { name="FamAgg"; version="1.30.0"; sha256="10khlziwvizhcw35ja41694m89nqbihfxazw0dka1xdwdz17fj8x"; depends=[BiocGenerics gap igraph kinship2 Matrix survey]; }; + FastqCleaner = derive2 { name="FastqCleaner"; version="1.20.0"; sha256="0v672v07591zwd48x1qbnrjg62xs0kldhi88vyi8f1ladcnk7zl4"; depends=[Biostrings DT htmltools IRanges Rcpp S4Vectors shiny shinyBS ShortRead]; }; + FeatSeekR = derive2 { name="FeatSeekR"; version="1.2.0"; sha256="0nxp961sbp43qnlyzh7ln4cixzr652ixngjqbl6zb8dc74hpmbaf"; depends=[MASS pheatmap pracma SummarizedExperiment]; }; + FilterFFPE = derive2 { name="FilterFFPE"; version="1.12.0"; sha256="0qx529j65d47xz30zw9l671359v0cdag37692zg7v4g6pmzdz0fh"; depends=[doParallel foreach GenomicRanges IRanges Rsamtools S4Vectors]; }; + FindIT2 = derive2 { name="FindIT2"; version="1.8.0"; sha256="1zhc8lwi1yasz1iz5l47i0cqp0jrb8l7dii43v6arc9ay4mfa7w7"; depends=[BiocGenerics BiocParallel dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel glmnet IRanges MultiAssayExperiment patchwork progress purrr qvalue rlang rtracklayer S4Vectors stringr SummarizedExperiment tibble tidyr withr]; }; + FitHiC = derive2 { name="FitHiC"; version="1.28.0"; sha256="0ygcq3xi55swsmysn539cr3m504rfb6zm30w747pa46r63dfjda7"; depends=[data_table fdrtool Rcpp]; }; + FlowSOM = derive2 { name="FlowSOM"; version="2.10.0"; sha256="170xz3b4kfsxpqirfz9vk4j8dkdmz4qd0a1nm3yaya1rddpg9m3l"; depends=[BiocGenerics colorRamps ConsensusClusterPlus dplyr flowCore ggforce ggnewscale ggplot2 ggpubr igraph magrittr rlang Rtsne tidyr XML]; }; + FunChIP = derive2 { name="FunChIP"; version="1.28.0"; sha256="1qhwabm7vgjqmgxdla6qs70sncvzjc8qh5vpq5xqp50hk1lli7f1"; depends=[doParallel fda foreach GenomeInfoDb GenomicAlignments GenomicRanges RColorBrewer Rcpp Rsamtools shiny]; }; + FuseSOM = derive2 { name="FuseSOM"; version="1.4.0"; sha256="1mrb8rgrfn0mivczyw1k00rpkh6wh1v4fvxbdsq1r5jf0n0sgyil"; depends=[analogue cluster coop diptest fastcluster FCPS fpc ggplot2 ggplotify ggpubr pheatmap proxy psych Rcpp S4Vectors stringr SummarizedExperiment]; }; + GA4GHclient = derive2 { name="GA4GHclient"; version="1.26.0"; sha256="0s0d1m340v4nhms3mj1w126s003kmyfimnc1m6fj61glq8w8566j"; depends=[BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges httr IRanges jsonlite S4Vectors VariantAnnotation]; }; + GA4GHshiny = derive2 { name="GA4GHshiny"; version="1.24.0"; sha256="05wm2qj6cr81l9d1wk1xk1f02c3777k3hkjz4nwj65rsfph2g39f"; depends=[AnnotationDbi BiocGenerics dplyr DT GA4GHclient GenomeInfoDb GenomicFeatures openxlsx purrr S4Vectors shiny shinyjs shinythemes tidyr]; }; + GARS = derive2 { name="GARS"; version="1.22.0"; sha256="0p6r48k6yljwqj13yfdlk2s97fmmwwdpyzwsmpi26p5j9q6352pl"; depends=[cluster DaMiRseq ggplot2 MLSeq SummarizedExperiment]; }; + GAprediction = derive2 { name="GAprediction"; version="1.28.0"; sha256="1nn67bnb4h6z7xdi8ngjw3lkz6wjn6fzcxlhl46wnzg01hiqvjwz"; depends=[glmnet Matrix]; }; + GBScleanR = derive2 { name="GBScleanR"; version="1.6.0"; sha256="19v3w4f8d0011c70x47bfiaqybdj52hya2nw18zsbggpcp8l8hn7"; depends=[expm gdsfmt ggplot2 Rcpp RcppParallel SeqArray tidyr]; }; + GDCRNATools = derive2 { name="GDCRNATools"; version="1.22.0"; sha256="1d98q3hgkfl53k50ag8yfkdq9sjb65qmyvd9z2dnil1p1kksxz9x"; depends=[BiocParallel biomaRt clusterProfiler DESeq2 DOSE DT edgeR GenomicDataCommons ggplot2 gplots jsonlite limma org_Hs_eg_db pathview rjson shiny survival survminer XML]; }; + GDSArray = derive2 { name="GDSArray"; version="1.22.0"; sha256="132xam32zh9bwh08ar593bwzn2icdwppr1ahfmkgvknpf94wg288"; depends=[BiocGenerics DelayedArray gdsfmt S4Vectors SeqArray SNPRelate]; }; + GEM = derive2 { name="GEM"; version="1.28.0"; sha256="1hzhjpq396a8h05m0j9yz641wz3hz2j3wr5va695cixs3m8gpgpg"; depends=[ggplot2]; }; + GENESIS = derive2 { name="GENESIS"; version="2.32.0"; sha256="1ccxl1a277s80i8qbvkcqajgwbl90rbjv3dhfzcq4dm6gqw805l9"; depends=[Biobase BiocGenerics BiocParallel data_table gdsfmt GenomicRanges GWASTools igraph IRanges Matrix reshape2 S4Vectors SeqArray SeqVarTools SNPRelate]; }; + GENIE3 = derive2 { name="GENIE3"; version="1.24.0"; sha256="0bsid8qhcqgalqghr2b2592pzm4viyi7wq8h5dmhrrl7gky8l60k"; depends=[dplyr reshape2]; }; + GEOexplorer = derive2 { name="GEOexplorer"; version="1.8.0"; sha256="1jhjsjqbd2hx0axf55k0q4ls21bb3p1x9y9k5s4sb6wanmpgiqpw"; depends=[Biobase car DT edgeR enrichR factoextra GEOquery ggplot2 heatmaply htmltools httr impute knitr limma markdown pheatmap plotly R_utils readxl scales shiny shinybusy shinycssloaders shinyHeatmaply stringr sva umap xfun XML xml2]; }; + GEOfastq = derive2 { name="GEOfastq"; version="1.10.0"; sha256="0j3x5q531yzma852wqrm2g5m643hjg0laa91n6a5r8zcr14f2kw6"; depends=[doParallel foreach plyr RCurl rvest stringr xml2]; }; + GEOmetadb = derive2 { name="GEOmetadb"; version="1.64.0"; sha256="11z6fq12kk7v0aqx1fi4bqhq6zhiq101hs6b6fgabqnjy7f96azq"; depends=[GEOquery RSQLite]; }; + GEOquery = derive2 { name="GEOquery"; version="2.70.0"; sha256="1xjfh9lx2cfwzkk61pdarajsa86nzhy3dz7r4zws20pz4xkhwv87"; depends=[Biobase curl data_table dplyr limma magrittr R_utils readr tidyr xml2]; }; + GEOsubmission = derive2 { name="GEOsubmission"; version="1.54.0"; sha256="03icqyknc0kli12ybnk08pqhinagn8d7m73dyl90wnpc87sm8lqw"; depends=[affy Biobase]; }; + GEWIST = derive2 { name="GEWIST"; version="1.46.0"; sha256="02abx3zr4vyklc4d611ygy8g0msl4ir7d6fh9gp0lx1bscvqraa0"; depends=[car]; }; + GGPA = derive2 { name="GGPA"; version="1.14.0"; sha256="08xbxbqq9vm1i3y99n72v4m7crf18wq7mk21psm7jpp7b0k8f0xr"; depends=[GGally matrixStats network Rcpp RcppArmadillo scales sna]; }; + GIGSEA = derive2 { name="GIGSEA"; version="1.20.0"; sha256="08039jcq5jxq343ig56x22w1yqwnmd5wz65r3ipldp7dcrm2ccfp"; depends=[locfdr MASS Matrix]; }; + GISPA = derive2 { name="GISPA"; version="1.26.0"; sha256="19vbcfdf959xs6kgds37ij3qay9x61dzrlvcs238m7hywl4dn3lz"; depends=[Biobase changepoint data_table genefilter GSEABase HH lattice latticeExtra plyr scatterplot3d]; }; + GLAD = derive2 { name="GLAD"; version="2.66.0"; sha256="04wyzn56crz7sa453qj07p90vvg8nwrqz54m9ms9vf9z8adpck51"; depends=[aws]; }; + GMRP = derive2 { name="GMRP"; version="1.30.0"; sha256="15d4yr2lvdap8ypqxl83n44v58spq1ffa42pcp37jbsymwg4azx9"; depends=[diagram GenomicRanges plotrix]; }; + GNET2 = derive2 { name="GNET2"; version="1.18.0"; sha256="1735aywf8k9ivq6s39lc9ws35sk936c9k1m25fgc23ryw4bkr1rn"; depends=[DiagrammeR dplyr ggplot2 igraph matrixStats Rcpp reshape2 SummarizedExperiment xgboost]; }; + GNOSIS = derive2 { name="GNOSIS"; version="1.0.0"; sha256="0dv0ikznabg3lihwhx33ciy9glfqbg1lgd42qzw67gk4zin5jxdf"; depends=[car cBioPortalData compareGroups dashboardthemes DescTools DT fabricatr fontawesome maftools magrittr operator_tools partykit RColorBrewer reshape2 rpart rstatix shiny shinycssloaders shinydashboard shinydashboardPlus shinyjs shinylogs shinymeta shinyWidgets survival survminer tidyverse]; }; + GOSemSim = derive2 { name="GOSemSim"; version="2.28.0"; sha256="10jhjzgf10w9cmr97qzc3mqvgvgx9h7pqk7zkkqwhg7anv6wa788"; depends=[AnnotationDbi GO_db Rcpp rlang]; }; + GOSim = derive2 { name="GOSim"; version="1.40.0"; sha256="1izsjs3li1qcp2nfy7zk3zbf3hh7kq75r78ijbn5yln9fgs6mbv1"; depends=[annotate AnnotationDbi cluster corpcor flexmix GO_db graph Matrix org_Hs_eg_db RBGL Rcpp topGO]; }; + GOTHiC = derive2 { name="GOTHiC"; version="1.38.0"; sha256="1cfbbx1vp19rxvjya3f1ij0gn36fcychfa5fhq71lrc31x9z6kf0"; depends=[BiocGenerics BiocManager Biostrings BSgenome data_table GenomeInfoDb GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors ShortRead]; }; + GOexpress = derive2 { name="GOexpress"; version="1.36.0"; sha256="17zchlp8c9yikkacimvgrkyijmnlj60vp4bk0rvm2brcff0cxywb"; depends=[Biobase biomaRt ggplot2 gplots randomForest RColorBrewer RCurl stringr]; }; + GOfuncR = derive2 { name="GOfuncR"; version="1.22.0"; sha256="1baa3aabkhmwq66xkzf4jk5nz85kkx1ks0mqc91s2ra9916wj6cd"; depends=[AnnotationDbi GenomicRanges gtools IRanges mapplots Rcpp vioplot]; }; + GOpro = derive2 { name="GOpro"; version="1.28.0"; sha256="1shgn74ix5kj0f8pxm1f3pisg1x40dss51xjihlk3cjkypil3ark"; depends=[AnnotationDbi BH dendextend doParallel foreach GO_db IRanges MultiAssayExperiment org_Hs_eg_db Rcpp S4Vectors]; }; + GOstats = derive2 { name="GOstats"; version="2.68.0"; sha256="1v10ss1gf4a3qp6hbwa2f0la9sgiwhszg4c45qd6gv0dja2v30fs"; depends=[annotate AnnotationDbi AnnotationForge Biobase Category GO_db graph RBGL Rgraphviz]; }; + GOsummaries = derive2 { name="GOsummaries"; version="2.37.0"; sha256="1r2a1bym6hwhah4gq47j7983znwsl3fwbhx9lw9j1nxm4ip0d7nr"; depends=[ggplot2 gProfileR gtable limma plyr Rcpp reshape2]; }; + GPA = derive2 { name="GPA"; version="1.14.0"; sha256="09cc0i4dw8dsrcms927bmzlz3pa9qwg1j3ibl769v0qhbfblnqla"; depends=[DT ggplot2 ggrepel plyr Rcpp shiny shinyBS vegan]; }; + GRENITS = derive2 { name="GRENITS"; version="1.54.0"; sha256="1f3b2fnywxikf3h623fd5hbxpq4lslfa2i7z4qjn7dyxj4swv3a1"; depends=[ggplot2 Rcpp RcppArmadillo reshape2]; }; + GRaNIE = derive2 { name="GRaNIE"; version="1.6.1"; sha256="1v9p7nsf5ccykpb3njdmggdqdzjwksv89g6wzrqii1m1jz9nq7v8"; depends=[AnnotationHub biomaRt Biostrings checkmate circlize colorspace ComplexHeatmap data_table DESeq2 dplyr ensembldb forcats futile_logger GenomeInfoDb GenomicRanges ggplot2 gridExtra igraph limma magrittr Matrix matrixStats patchwork progress RColorBrewer readr reshape2 rlang S4Vectors scales stringr SummarizedExperiment tibble tidyr tidyselect topGO viridis]; }; + GRmetrics = derive2 { name="GRmetrics"; version="1.28.0"; sha256="0r5wbwk8l46sdh3860hm6q1vvqb2fizwvp9cx1nbl4725y688di9"; depends=[drc ggplot2 plotly S4Vectors SummarizedExperiment]; }; + GSALightning = derive2 { name="GSALightning"; version="1.30.0"; sha256="1hf950j4n7a00qlil841kpc7n00rszb530v73hyd9sya78yn3saz"; depends=[data_table Matrix]; }; + GSAR = derive2 { name="GSAR"; version="1.36.0"; sha256="18bd5hsag1jicggqrc3kmn70vmaxdqkwyngmnzv511v26nq3qv1f"; depends=[igraph]; }; + GSCA = derive2 { name="GSCA"; version="2.32.0"; sha256="068zr4rzjafqrxhd9ajyrw896dfh6q97sghl8p7ik9d8074m1y2b"; depends=[ggplot2 gplots RColorBrewer reshape2 rhdf5 shiny sp]; }; + GSEABase = derive2 { name="GSEABase"; version="1.64.0"; sha256="1y7z3627shskwss8bzjz1xm02rv4s7cdi91v1xqdsbdayjkrh1nb"; depends=[annotate AnnotationDbi Biobase BiocGenerics graph XML]; }; + GSEABenchmarkeR = derive2 { name="GSEABenchmarkeR"; version="1.22.0"; sha256="14g147qamfcg91fmg4dsmzbcw7j0a826i40k57za3zkr0qxjpf0g"; depends=[AnnotationDbi AnnotationHub Biobase BiocFileCache BiocParallel edgeR EnrichmentBrowser ExperimentHub KEGGandMetacoreDzPathwaysGEO KEGGdzPathwaysGEO S4Vectors SummarizedExperiment]; }; + GSEAlm = derive2 { name="GSEAlm"; version="1.62.0"; sha256="0imaj5g7x2qnzqzdf4kgf7jgq6myyylphgnflgnprc0fys2l5qq8"; depends=[Biobase]; }; + GSEAmining = derive2 { name="GSEAmining"; version="1.12.0"; sha256="1n2szlv5jsr4h6dnf6d326lym3nbkaslr56dmggm699j7bb661wn"; depends=[dendextend dplyr ggplot2 ggwordcloud gridExtra rlang stringr tibble tidytext]; }; + GSRI = derive2 { name="GSRI"; version="2.50.0"; sha256="0y9cmxwv3x766m5aa0spqljnm1sh8zis1wlaa2585crdciqki39l"; depends=[Biobase fdrtool genefilter GSEABase les]; }; + GSReg = derive2 { name="GSReg"; version="1.36.0"; sha256="0hclk184ckblf464w2fgvjga5h4831j4srz9813ggm0q8raa7a4v"; depends=[AnnotationDbi GenomicFeatures Homo_sapiens org_Hs_eg_db]; }; + GSVA = derive2 { name="GSVA"; version="1.50.0"; sha256="01w5j7fmi3hsfd282kcn4v41mi58z2yfhapff2zgf9swdfps4m6z"; depends=[Biobase BiocParallel BiocSingular DelayedArray DelayedMatrixStats GSEABase HDF5Array IRanges Matrix S4Vectors SingleCellExperiment sparseMatrixStats SummarizedExperiment]; }; + GSgalgoR = derive2 { name="GSgalgoR"; version="1.12.0"; sha256="1yzx8dk26cmyr3xcnvm0s13avbc0r2yd1ccrk87frv8xnd0hrl0i"; depends=[cluster doParallel foreach matchingR nsga2R proxy survival]; }; + GUIDEseq = derive2 { name="GUIDEseq"; version="1.32.0"; sha256="123r4wcc9nxzjdp5jfil5y2l3c3gc470xyq14mh8lv5g7drixc6m"; depends=[BiocGenerics Biostrings BSgenome ChIPpeakAnno CRISPRseek data_table dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 hash IRanges limma matrixStats multtest openxlsx patchwork purrr rio rlang Rsamtools S4Vectors stringr tidyr]; }; + GWAS_BAYES = derive2 { name="GWAS.BAYES"; version="1.12.0"; sha256="1v3zp4n7p27mdylagz6i0n36pvqd2sy869l1mjldp9j1ypcqnysb"; depends=[caret GA limma MASS Matrix memoise]; }; + GWASTools = derive2 { name="GWASTools"; version="1.48.0"; sha256="1rjgdcw65zmmg5dy9mdaz720nvqk03bfsfvkdsa1wwhvlnxmscp8"; depends=[Biobase data_table DBI DNAcopy gdsfmt GWASExactHW lmtest logistf quantsmooth RSQLite sandwich survival]; }; + GWENA = derive2 { name="GWENA"; version="1.12.0"; sha256="0mjlqkdsy9d82mg655ydw0cb2vb70jf2xsnbjgjfqjpb1j7qn5hd"; depends=[cluster dplyr dynamicTreeCut ggplot2 gprofiler2 igraph magrittr matrixStats NetRep purrr RColorBrewer rlist stringr SummarizedExperiment tibble tidyr WGCNA]; }; + GateFinder = derive2 { name="GateFinder"; version="1.22.0"; sha256="0854gknmhz2rrliklzr5cz1miqza2249i5nhhkav78fw5pk5gqsl"; depends=[diptest flowCore flowFP mvoutlier splancs]; }; + GenProSeq = derive2 { name="GenProSeq"; version="1.6.0"; sha256="17rqr4k9n0mkwii48phsh9z3qv1xp1pvk5bcs53mav9z9x24fij6"; depends=[CatEncoders DeepPINCS keras mclust reticulate tensorflow ttgsea word2vec]; }; + GenVisR = derive2 { name="GenVisR"; version="1.34.0"; sha256="0mlv0r2f6800z8v96ba5227svp9r5cyhr8ijs072qw4g30h6mcpa"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings BSgenome data_table DBI GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra gtable gtools IRanges plyr reshape2 Rsamtools scales VariantAnnotation viridis]; }; + GeneBreak = derive2 { name="GeneBreak"; version="1.32.0"; sha256="1vsk891b4200cgia1dgz72nj11iq9r7wfz1j18a673qxj08505wn"; depends=[CGHbase CGHcall GenomicRanges QDNAseq]; }; + GeneExpressionSignature = derive2 { name="GeneExpressionSignature"; version="1.48.0"; sha256="0h58p1jzppz16l85498fa7kl8zwnrbilp9x09sby9lalkcdrzvry"; depends=[Biobase]; }; + GeneGA = derive2 { name="GeneGA"; version="1.52.0"; sha256="0k848y1kw9iq8wv5hfk2ylykj22mnrpj5881d47mkgii4j6l2ika"; depends=[hash seqinr]; }; + GeneGeneInteR = derive2 { name="GeneGeneInteR"; version="1.28.0"; sha256="1bfz7i8cbn0ddnyb3dnj8xrb1r6jsxf4hplxacis7yi6l1vylvzy"; depends=[data_table FactoMineR GenomicRanges igraph IRanges kernlab mvtnorm Rsamtools snpStats]; }; + GeneMeta = derive2 { name="GeneMeta"; version="1.74.0"; sha256="1m08gd0n1j21s9p8ppvqzzplwrnpknb5lprg07zlsr4c78fb0mgg"; depends=[Biobase genefilter]; }; + GeneNetworkBuilder = derive2 { name="GeneNetworkBuilder"; version="1.44.0"; sha256="0gz7lmn5qspnak3mcbjpbvy5436d8p15pq46877xykv9anry6z0v"; depends=[graph htmlwidgets plyr Rcpp Rgraphviz rjson XML]; }; + GeneOverlap = derive2 { name="GeneOverlap"; version="1.38.0"; sha256="074d3inz8sh8xxjliisa0p99rgy6r9fg9ljaka5bf1waxwpknzpw"; depends=[gplots RColorBrewer]; }; + GeneRegionScan = derive2 { name="GeneRegionScan"; version="1.58.0"; sha256="1zq9gnp81swpd88flr344snnn3mlhihrma5k0j95m4mi1g6sp3j6"; depends=[affxparser Biobase Biostrings RColorBrewer S4Vectors]; }; + GeneSelectMMD = derive2 { name="GeneSelectMMD"; version="2.46.0"; sha256="09d9dy85bdq86h429ycvqwnz2zpnn3p405l1x1b8p53g6g525d9a"; depends=[Biobase limma MASS]; }; + GeneStructureTools = derive2 { name="GeneStructureTools"; version="1.22.0"; sha256="07l3702hdxqd4bm8rd4ac69z0j30dxrk8k2srvli99dp5w7cqby3"; depends=[Biostrings BSgenome_Mmusculus_UCSC_mm10 data_table GenomicRanges Gviz IRanges plyr rtracklayer S4Vectors stringdist stringr]; }; + GeneTonic = derive2 { name="GeneTonic"; version="2.6.0"; sha256="1mdhs8ak72dxf30xiwjs6hdpkz6hxbzbxqr495l3vm2az6738y5l"; depends=[AnnotationDbi backbone bs4Dash circlize colorspace colourpicker ComplexHeatmap ComplexUpset dendextend DESeq2 dplyr DT dynamicTreeCut expm ggforce ggplot2 ggrepel ggridges GO_db igraph matrixStats plotly RColorBrewer rintrojs rlang rmarkdown S4Vectors scales shiny shinyAce shinycssloaders shinyWidgets SummarizedExperiment tidyr tippy viridis visNetwork]; }; + GeneticsPed = derive2 { name="GeneticsPed"; version="1.64.0"; sha256="0bsrgdryh8qdmsfsmd046rl04za9pkbgi034qmisbq9m1w5i9my8"; depends=[gdata genetics MASS]; }; + GenomAutomorphism = derive2 { name="GenomAutomorphism"; version="1.4.0"; sha256="0hpicwmlzlpgbqprzmq1ip9fnznvn2h8axa02rr5s7dk7ynidwcq"; depends=[BiocGenerics BiocParallel Biostrings data_table doParallel dplyr foreach GenomeInfoDb GenomicRanges IRanges numbers S4Vectors]; }; + GenomeInfoDb = derive2 { name="GenomeInfoDb"; version="1.38.5"; sha256="17w5zrvpk2x0sc55xfkbn9krphg4aszmvwmj1qfsf1bdrazfpwic"; depends=[BiocGenerics GenomeInfoDbData IRanges RCurl S4Vectors]; }; + GenomicAlignments = derive2 { name="GenomicAlignments"; version="1.38.0"; sha256="06xa3dcdk6jprvpyvr3pfbv6qv8xrqw2n6rrfp8q8qizx3ifj431"; depends=[BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; }; + GenomicDataCommons = derive2 { name="GenomicDataCommons"; version="1.26.0"; sha256="1inikcczkhav6h6a46ix9ixkf7b1n8rf766m5hmhmx09sspzsm5w"; depends=[dplyr GenomicRanges httr IRanges jsonlite magrittr rappdirs readr rlang tibble tidyr xml2]; }; + GenomicDistributions = derive2 { name="GenomicDistributions"; version="1.10.0"; sha256="0w6janm5awf15n0l6jhh9k371dcx2ad1rqf0gdqfi2asaafzbgrx"; depends=[Biostrings broom data_table dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges plyr reshape2 scales]; }; + GenomicFeatures = derive2 { name="GenomicFeatures"; version="1.54.1"; sha256="1b2rx16l7zd4lisqssbkcwi534s7m7h1w6k72km6c835x2cdxfs4"; depends=[AnnotationDbi Biobase BiocGenerics BiocIO biomaRt Biostrings DBI GenomeInfoDb GenomicRanges IRanges RCurl RSQLite rtracklayer S4Vectors XVector]; }; + GenomicFiles = derive2 { name="GenomicFiles"; version="1.38.0"; sha256="1kvys60hhb0ndjvjdanfgciq3jc42iag8r0a199gv6w5bjaxp6wm"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges MatrixGenerics Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; + GenomicInteractionNodes = derive2 { name="GenomicInteractionNodes"; version="1.6.0"; sha256="0160xjki6cf0x4dqp2wmszala35wp77jz5qp2c3ppl07l8dm21jc"; depends=[AnnotationDbi GenomeInfoDb GenomicFeatures GenomicRanges GO_db graph IRanges RBGL S4Vectors]; }; + GenomicInteractions = derive2 { name="GenomicInteractions"; version="1.36.0"; sha256="13rnxig22agykzv3q7wm4wr9c5aw56q6q1zv8m5g5ngjcssy8l4c"; depends=[Biobase BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz igraph InteractionSet IRanges Rsamtools rtracklayer S4Vectors stringr]; }; + GenomicOZone = derive2 { name="GenomicOZone"; version="1.16.0"; sha256="1dr10qwwnk4qz9n0yk7q6yrrwplhx8rnnrn9p521a551jyn0yw38"; depends=[biomaRt Ckmeans_1d_dp GenomeInfoDb GenomicRanges ggbio ggplot2 gridExtra IRanges lsr plyr Rdpack S4Vectors]; }; + GenomicPlot = derive2 { name="GenomicPlot"; version="1.0.0"; sha256="02n040caak6gibyxxns4hs045qqwwcgf1bbpgpa5lsa8ld4lrrk4"; depends=[BiocGenerics circlize ComplexHeatmap cowplot dplyr edgeR genomation GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggplotify ggpubr ggsci ggsignif IRanges plyranges RCAS Rsamtools rtracklayer scales tidyr VennDiagram viridis]; }; + GenomicRanges = derive2 { name="GenomicRanges"; version="1.54.1"; sha256="1vrs3r8dyhhwj0s3vwvr168s84x5hj10lnpg1xf5c2kbj26bdv0w"; depends=[BiocGenerics GenomeInfoDb IRanges S4Vectors XVector]; }; + GenomicScores = derive2 { name="GenomicScores"; version="2.14.3"; sha256="0rhyfbm5whz4jygar9cqcrfy92h1lyam5wd8d9svhh80f15v53m9"; depends=[AnnotationHub Biobase BiocFileCache BiocGenerics BiocManager Biostrings DelayedArray GenomeInfoDb GenomicRanges HDF5Array httr IRanges rhdf5 S4Vectors XML]; }; + GenomicSuperSignature = derive2 { name="GenomicSuperSignature"; version="1.10.0"; sha256="0aq6919aqd0wp4z98isvq5gyydcxjq1ihsvi4nky9s5lrsibdpn0"; depends=[Biobase BiocFileCache ComplexHeatmap dplyr flextable ggplot2 ggpubr irlba plotly S4Vectors SummarizedExperiment]; }; + GenomicTuples = derive2 { name="GenomicTuples"; version="1.36.0"; sha256="1bw8ki8xap7v4n3lcwvbybv6rf0jwzdyjsnhabrvs8x43prl5h6x"; depends=[BiocGenerics data_table GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; + GeoDiff = derive2 { name="GeoDiff"; version="1.8.0"; sha256="1z3x8xcjl5kr4wyamhxf1p5mc28pc0cmv0j9nzzbzvz6mkf0ma1y"; depends=[Biobase GeomxTools lme4 Matrix NanoStringNCTools plyr Rcpp RcppArmadillo robust roptim testthat withr]; }; + GeoTcgaData = derive2 { name="GeoTcgaData"; version="2.2.0"; sha256="1mlbi8f32mhkwdkrl95krjx6vckb4k8rs9drf521rm933qjjhz07"; depends=[cqn data_table plyr SummarizedExperiment topconfects]; }; + GeomxTools = derive2 { name="GeomxTools"; version="3.5.0"; sha256="040gm10fbq1hal2jsvbry556mwn3g0i6vz2bh9x1nvk4rp1yjs6w"; depends=[Biobase BiocGenerics data_table dplyr EnvStats GGally ggplot2 lmerTest NanoStringNCTools readxl reshape2 rjson rlang S4Vectors SeuratObject stringr]; }; + GladiaTOX = derive2 { name="GladiaTOX"; version="1.18.0"; sha256="01hb21j4pi59ix2ffj8aalc1zq382zw3n2gfaxqng78gadi1ck2n"; depends=[brew data_table DBI ggplot2 ggrepel numDeriv RColorBrewer RCurl RJSONIO RMariaDB RSQLite stringr tidyr XML xtable]; }; + Glimma = derive2 { name="Glimma"; version="2.12.0"; sha256="0pkh15jjjb83pq7d49yzwb2gyc95x4rww78qnzpdrzhycgmcapii"; depends=[DESeq2 edgeR htmlwidgets jsonlite limma S4Vectors SummarizedExperiment]; }; + GloScope = derive2 { name="GloScope"; version="1.0.0"; sha256="1zjj0pk2i0c6ivx05kyn1hd1pwnjdrx24dyf6gxg1q8hvdbpz7q2"; depends=[BiocParallel FNN ggplot2 MASS mclust mvnfast RANN rlang SingleCellExperiment]; }; + GlobalAncova = derive2 { name="GlobalAncova"; version="4.20.0"; sha256="0j1ma04zjsvf668idms8hx1vnw3sh5yy8fbhwscyk1qbfy708cfh"; depends=[annotate AnnotationDbi Biobase corpcor dendextend globaltest GSEABase VGAM]; }; + GmicR = derive2 { name="GmicR"; version="1.16.0"; sha256="1aglik6ywfwr6qpjb6b5ykg02x1k9q4v83liw29dahh74hp7rdzz"; depends=[AnnotationDbi ape bnlearn Category data_table doParallel DT foreach GOstats gRain gRbase GSEABase org_Hs_eg_db org_Mm_eg_db reshape2 shiny WGCNA]; }; + GraphAT = derive2 { name="GraphAT"; version="1.74.0"; sha256="1r5jz6w2cnc96arbilzgapp8xbn3kpv8jjamy58wycxqsj468p8f"; depends=[graph MCMCpack]; }; + GraphAlignment = derive2 { name="GraphAlignment"; version="1.66.0"; sha256="0gjij3nvmm5bd4bi5ljgjm6fj610jdbhdasx48jl6l366a06si0s"; depends=[]; }; + GraphPAC = derive2 { name="GraphPAC"; version="1.44.0"; sha256="1dz88vy85njw8lsr2y14fwjb3rnlr808xyw3aw8k8vavn6y82v5a"; depends=[igraph iPAC RMallow TSP]; }; + GreyListChIP = derive2 { name="GreyListChIP"; version="1.34.0"; sha256="1k974cvfbkl8ffn7k2la843bv2pf33cr5f6fahiiy24d68lxwifr"; depends=[BSgenome GenomeInfoDb GenomicAlignments GenomicRanges MASS Rsamtools rtracklayer SummarizedExperiment]; }; + Guitar = derive2 { name="Guitar"; version="2.18.0"; sha256="09i6j8dcmzvd9gh9629523hw0hbng18jdqw5gf1r31ck8m8wwmnc"; depends=[AnnotationDbi dplyr GenomicFeatures GenomicRanges ggplot2 knitr magrittr rtracklayer]; }; + Gviz = derive2 { name="Gviz"; version="1.46.1"; sha256="0an8hd2g2hp3p1vfsmxq77fm71xlf5g73j4w5mcy28x1aj073zxf"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings biovizBase BSgenome digest ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges lattice latticeExtra matrixStats RColorBrewer Rsamtools rtracklayer S4Vectors XVector]; }; + HDF5Array = derive2 { name="HDF5Array"; version="1.30.0"; sha256="0p52n96mydqszpq1ysmbh5xs4n4icqsd0gbxl5wpkcwvvhxliw8b"; depends=[BiocGenerics DelayedArray IRanges Matrix rhdf5 rhdf5filters Rhdf5lib S4Arrays S4Vectors]; }; + HDTD = derive2 { name="HDTD"; version="1.36.0"; sha256="0y243fava1n8ivnd7y2grmllj358k1rva4axrlyyy8y9z9krkyr2"; depends=[Rcpp RcppArmadillo]; }; + HELP = derive2 { name="HELP"; version="1.60.0"; sha256="0q55prngrr04w5ma255k50yyzq13aqxmvk2yi12j4m4315h35ciz"; depends=[Biobase]; }; + HEM = derive2 { name="HEM"; version="1.74.0"; sha256="1zii27ihz42117mw6ipa1djv4nr1zlh3xkybp8ic2m143q1s7jsq"; depends=[Biobase]; }; + HERON = derive2 { name="HERON"; version="1.0.0"; sha256="0jz3c2mjgrqr9l0nz9y89qbxfbv94s745rc7vi1wgnij1ia6b8xi"; depends=[cluster data_table GenomicRanges harmonicmeanp IRanges limma Matrix matrixStats metap S4Vectors spdep SummarizedExperiment]; }; + HGC = derive2 { name="HGC"; version="1.10.0"; sha256="1x8j0x2yf0k6ngsgrnaq5rp2z50dfhffbnaqdn5pi5kr31mncnf9"; depends=[ape dendextend dplyr ggplot2 Matrix mclust patchwork RANN Rcpp RcppEigen]; }; + HIBAG = derive2 { name="HIBAG"; version="1.38.1"; sha256="1spbnj6kfgrg4a2wzpj33d9spvjqs2nn2zmq7448j10dyk3vp0is"; depends=[RcppParallel]; }; + HIPPO = derive2 { name="HIPPO"; version="1.14.0"; sha256="0flxpyji8c6z7cllpav0js3sk47r6qja1m7pcwmz2ch6aia11k0s"; depends=[dplyr ggplot2 ggrepel gridExtra irlba magrittr Matrix reshape2 rlang Rtsne SingleCellExperiment umap]; }; + HIREewas = derive2 { name="HIREewas"; version="1.20.0"; sha256="1vq9hqdyz26q27h1vjs2p5kq4m97qdi06j4wsiw38vigj4q1s2yw"; depends=[gplots quadprog]; }; + HMMcopy = derive2 { name="HMMcopy"; version="1.44.0"; sha256="1nhm8bv6p5zcs7f9p1hqzyjgya6v3q8rl13blh135pk9gxjiad2c"; depends=[data_table]; }; + HPAanalyze = derive2 { name="HPAanalyze"; version="1.20.0"; sha256="1xsln9sbflfvnm7fygh7lp1b6qc0wcrxyhz1sh2cfbwchx75hdhz"; depends=[dplyr ggplot2 gridExtra openxlsx tibble xml2]; }; + HPiP = derive2 { name="HPiP"; version="1.8.0"; sha256="0xsnjyzhzwfaiglyws8kqk9xnqzsjmmx7hmynr1dxrsmp57dracf"; depends=[caret corrplot dplyr ggplot2 httr igraph magrittr MCL pROC protr PRROC purrr readr stringr tibble tidyr]; }; + HTSFilter = derive2 { name="HTSFilter"; version="1.42.0"; sha256="1n3s24z6c9l7n3ri053rgxpj2xm7v9llhdqwnzb5ajvarkiikl6l"; depends=[Biobase BiocParallel DESeq2 edgeR]; }; + HTSeqGenie = derive2 { name="HTSeqGenie"; version="4.32.0"; sha256="1n2kj66m7r6fxzkh99fyl14glcdkr8ba1ywi5kqlr09msckg1ngw"; depends=[BiocGenerics BiocParallel Biostrings Cairo chipseq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gmapR hwriter IRanges Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment VariantAnnotation VariantTools]; }; + HTqPCR = derive2 { name="HTqPCR"; version="1.56.0"; sha256="14cff36ikbqhd5xizihpxzsv9jimcpbgnd381jd154pgi60bil0m"; depends=[affy Biobase gplots limma RColorBrewer]; }; + Harman = derive2 { name="Harman"; version="1.30.0"; sha256="1kfraxmkqkqn8j3lj1lfb7i18q8iyprih1wvr0dnx6prvz8wjl1p"; depends=[Ckmeans_1d_dp matrixStats Rcpp]; }; + HarmonizR = derive2 { name="HarmonizR"; version="1.0.0"; sha256="1gsgqirwk6p1babwidlhdmj6ilx2z8qlwi8b2vdxxjzxz9gqa9lj"; depends=[doParallel foreach janitor limma plyr seriation SummarizedExperiment sva]; }; + Harshlight = derive2 { name="Harshlight"; version="1.74.0"; sha256="1djs95l04b3qrqcb7jkzhfmxzbsn2riyydz8p2lmilg6z9rkdqx7"; depends=[affy altcdfenvs Biobase]; }; + Heatplus = derive2 { name="Heatplus"; version="3.10.0"; sha256="1vs7x4dc2vrfi2wi300bjr2hl1wwp4v27sgzycr6qv6x2nx9i5xq"; depends=[RColorBrewer]; }; + HelloRanges = derive2 { name="HelloRanges"; version="1.28.0"; sha256="0pzx5hixkyqqqgd2r7l9j0vhd7w5b0hlkkaxsfa7jvcizjbv3lgh"; depends=[BiocGenerics BiocIO Biostrings BSgenome docopt GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; + Herper = derive2 { name="Herper"; version="1.12.0"; sha256="02jypf2bzaqqdlx32cgvpf8vw13ax51nkibg36fkvh69prz17nq4"; depends=[reticulate rjson withr]; }; + HiCBricks = derive2 { name="HiCBricks"; version="1.20.0"; sha256="0590ihwsmw1b5fj54jmlpy24mhsnpphazlzi20hvjy7j3yjzzzzg"; depends=[BiocParallel curl data_table digest GenomeInfoDb GenomicRanges ggplot2 IRanges jsonlite R_utils R6 RColorBrewer readr reshape2 rhdf5 S4Vectors scales stringr tibble viridis]; }; + HiCDCPlus = derive2 { name="HiCDCPlus"; version="1.10.0"; sha256="02n5pn4l1i6aybw60nmmf8665djxp9nypv076bmvjv19kmbm7kr7"; depends=[bbmle Biostrings BSgenome data_table dplyr GenomeInfoDb GenomicInteractions GenomicRanges InteractionSet IRanges MASS pscl R_utils Rcpp rlang rtracklayer S4Vectors tibble tidyr]; }; + HiCDOC = derive2 { name="HiCDOC"; version="1.4.0"; sha256="1y7dad3aljhi02p2nmcbc7ljkfw35g2sv54kqsdx76d97c0j8xr3"; depends=[BiocGenerics BiocParallel cowplot data_table GenomeInfoDb GenomicRanges ggplot2 gridExtra gtools InteractionSet multiHiCcompare pbapply Rcpp S4Vectors SummarizedExperiment zlibbioc]; }; + HiCExperiment = derive2 { name="HiCExperiment"; version="1.2.0"; sha256="12pif6yf4dg9s3bc24ibbbz9al0dx597g6kylwf7591s46z1m6mi"; depends=[BiocGenerics BiocIO BiocParallel dplyr GenomeInfoDb GenomicRanges InteractionSet IRanges Matrix rhdf5 S4Vectors strawr vroom]; }; + HiCcompare = derive2 { name="HiCcompare"; version="1.24.0"; sha256="1b38vdzdxzwhba33g7dnhiszlmfr8cwli971jmzyljjcfmsa1g2d"; depends=[BiocParallel data_table dplyr GenomicRanges ggplot2 gridExtra gtools InteractionSet IRanges KernSmooth mgcv pheatmap rhdf5 S4Vectors]; }; + HiContacts = derive2 { name="HiContacts"; version="1.4.0"; sha256="0adbyny0ji0a83rc12adbh2fws1x157wabv65d7gx0kwyz3jrzby"; depends=[BiocGenerics BiocIO BiocParallel dplyr GenomeInfoDb GenomicRanges ggplot2 ggrastr HiCExperiment InteractionSet IRanges Matrix readr RSpectra S4Vectors scales stringr SummarizedExperiment tibble tidyr]; }; + HiCool = derive2 { name="HiCool"; version="1.2.0"; sha256="0ilmps2wp7jm3hmlkrgnsrfzg4ianr25aawbh15x070sp2jsmmnj"; depends=[basilisk BiocIO dplyr GenomicRanges HiCExperiment InteractionSet IRanges plotly reticulate rmarkdown rmdformats S4Vectors sessioninfo stringr vroom]; }; + HiLDA = derive2 { name="HiLDA"; version="1.16.0"; sha256="0midjn8jhvm4cqljfi44jh850bl7drl7k22iwf1y7352jb1mjz84"; depends=[abind BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg19 cowplot forcats GenomicFeatures GenomicRanges ggplot2 R2jags Rcpp S4Vectors stringr tidyr TxDb_Hsapiens_UCSC_hg19_knownGene XVector]; }; + HiTC = derive2 { name="HiTC"; version="1.46.0"; sha256="16svq29fm9xl3rl9v6lyxf564manvp8ryxj1mbxc4pb360wmi780"; depends=[Biostrings GenomeInfoDb GenomicRanges IRanges Matrix RColorBrewer rtracklayer]; }; + HilbertCurve = derive2 { name="HilbertCurve"; version="1.32.0"; sha256="04575v4ha4znp7nc6irs79rldr8sp85785l362yx3hlz70hkg8n8"; depends=[circlize GenomicRanges HilbertVis IRanges png polylabelr]; }; + HilbertVis = derive2 { name="HilbertVis"; version="1.60.0"; sha256="1mb0011g4hp7bbx2qh29j9026yspw8ril7kszddy8n11wkgs9iwn"; depends=[lattice]; }; + HilbertVisGUI = derive2 { name="HilbertVisGUI"; version="1.60.0"; sha256="091jy4vixx9xw763mj5faxj02w07bqjk5myb75nban66yggxz5c2"; depends=[HilbertVis]; }; + HubPub = derive2 { name="HubPub"; version="1.10.0"; sha256="13jimwbyvfxwhr5dllv8l455as4fa556czizzwqddjh5hcw4n7mg"; depends=[available aws_s3 BiocManager biocthis dplyr fs usethis]; }; + HumanTranscriptomeCompendium = derive2 { name="HumanTranscriptomeCompendium"; version="1.17.0"; sha256="013lxz0hki13xsmx0j9m2r2hw203jnbnm0sjaaypi79m9p52maav"; depends=[S4Vectors shiny ssrch SummarizedExperiment]; }; + HybridMTest = derive2 { name="HybridMTest"; version="1.46.0"; sha256="1jkihcad453d7jqb78fl03yfqz169jz75c40y53569ndp2j4rg71"; depends=[Biobase fdrtool MASS survival]; }; + IFAA = derive2 { name="IFAA"; version="1.4.0"; sha256="09078d14zpck9ld3mmrav2g1s3fp33k40lbnlqjdfsq8myqpnf2x"; depends=[DescTools doParallel doRNG foreach glmnet HDCI mathjaxr Matrix MatrixExtra parallelly S4Vectors stringr SummarizedExperiment]; }; + IHW = derive2 { name="IHW"; version="1.30.0"; sha256="1pix38lg9snw0jdihh8sifnmckyw1lniwp95r93ca524g6swfc8b"; depends=[BiocGenerics fdrtool lpsymphony slam]; }; + IMAS = derive2 { name="IMAS"; version="1.26.0"; sha256="0c9ky8p0fjncn9wqx7s6ya2n1kixhakhm6ij3ccaacb8aaj97gaa"; depends=[AnnotationDbi BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfortify ggplot2 gridExtra IRanges IVAS lattice lme4 Matrix Rsamtools S4Vectors survival]; }; + IMMAN = derive2 { name="IMMAN"; version="1.22.0"; sha256="0wsv4hcvsdfm3npqh8qiqrl2bg95sqyrjxnv2xqa19niqbk6jlss"; depends=[Biostrings igraph seqinr STRINGdb]; }; + IMPCdata = derive2 { name="IMPCdata"; version="1.38.0"; sha256="0wlq95fi46zzk99mq1zh9rndl4d76ybvdxv0c5xi9gj71smd6sym"; depends=[rjson]; }; + INDEED = derive2 { name="INDEED"; version="2.16.0"; sha256="0338jf6dhskjp714ccbwizb02q8j45qr9wy3m69jv7r8c3f9r0xm"; depends=[devtools glasso igraph visNetwork]; }; + INPower = derive2 { name="INPower"; version="1.38.0"; sha256="0mk6lz0lsr34q3h6s5gd63jxl23fabc19zvjrk9w2anzxhnz7809"; depends=[mvtnorm]; }; + INSPEcT = derive2 { name="INSPEcT"; version="1.32.1"; sha256="04znack6p50cmc2qyk4hf45m6v70p0bv7h3xs87j0x0h4mb920ch"; depends=[Biobase BiocGenerics BiocParallel DESeq2 deSolve GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges KernSmooth plgem pROC readxl rootSolve Rsamtools rtracklayer S4Vectors shiny SummarizedExperiment TxDb_Mmusculus_UCSC_mm9_knownGene]; }; + INTACT = derive2 { name="INTACT"; version="1.2.0"; sha256="0azm7yh5zjzi3rhkajncckr1cxq5l2h3wicfn8g28mmgp71xxcc0"; depends=[bdsmatrix numDeriv SQUAREM]; }; + IONiseR = derive2 { name="IONiseR"; version="2.26.0"; sha256="1y595hq40kpsasp74wsbf3ngd2rrriqg65z9y4svcwdygj03pgrz"; depends=[BiocGenerics BiocParallel Biostrings bit64 dplyr ggplot2 magrittr rhdf5 ShortRead stringr tibble tidyr XVector]; }; + IPO = derive2 { name="IPO"; version="1.28.0"; sha256="0w9izdj3mg053xbb107qg6jk7rgkb0vhx7ji4l27fac8ynhh89dg"; depends=[BiocParallel CAMERA rsm xcms]; }; + IRanges = derive2 { name="IRanges"; version="2.36.0"; sha256="0rhh82hrsm32bdjamfah84p7zi8fvr4shyq2rdjfxzdp9qy5rh2q"; depends=[BiocGenerics S4Vectors]; }; + ISAnalytics = derive2 { name="ISAnalytics"; version="1.12.0"; sha256="0y8m3d3mkzashyzw4b2rajwgrxmnbn4izfdc1g5m4wdyzcwa7pkd"; depends=[bslib datamods dplyr DT forcats fs ggplot2 ggrepel glue lifecycle lubridate purrr readr readxl rlang shiny shinyWidgets stringr tibble tidyr]; }; + ISLET = derive2 { name="ISLET"; version="1.4.0"; sha256="0dgjq159b4qd6f2f2x6lcpp9d22p1d5wrnhvcl1kzr1fdkqn6q3w"; depends=[abind BiocGenerics BiocParallel lme4 Matrix nnls purrr SummarizedExperiment]; }; + ISoLDE = derive2 { name="ISoLDE"; version="1.30.0"; sha256="1b8xrdyds2082f1j7yn160y1h4vad6z01rf4lmbh474k9wwwxfpd"; depends=[]; }; + ITALICS = derive2 { name="ITALICS"; version="2.62.0"; sha256="0zk9n94nqw6vpw908ka32zppxwqkki9krzxib06y1nic3bri3w9i"; depends=[affxparser DBI GLAD ITALICSData oligo oligoClasses pd_mapping50k_xba240]; }; + IVAS = derive2 { name="IVAS"; version="2.22.0"; sha256="1sw2gqy0gy4src45ha42ngppg038imyj5hbr602amq0ni9nnnl3p"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges ggfortify ggplot2 IRanges lme4 Matrix S4Vectors]; }; + IWTomics = derive2 { name="IWTomics"; version="1.26.0"; sha256="0mzwpbvpl73yjn91l5gp94xwrm3gdr918g72ap07g8ch8dvf9bj7"; depends=[fda GenomicRanges gtable IRanges KernSmooth S4Vectors]; }; + Icens = derive2 { name="Icens"; version="1.74.0"; sha256="0fz66bchf41jzgabs1s8drpi3f7g27lid5g50lxwh6ph3i02cpaw"; depends=[survival]; }; + IdeoViz = derive2 { name="IdeoViz"; version="1.37.0"; sha256="1bhari5ghag5f5dlrgm79hckbh0bamd9567z04qi0spnfr97wf3s"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges RColorBrewer rtracklayer]; }; + IgGeneUsage = derive2 { name="IgGeneUsage"; version="1.16.0"; sha256="08qy3vw1v8ik1z80ds7hmxbpalssnqlrkkb0wsr78vzffll5yrjc"; depends=[BH Rcpp RcppEigen RcppParallel reshape2 rstan rstantools StanHeaders SummarizedExperiment tidyr]; }; + ImmuneSpaceR = derive2 { name="ImmuneSpaceR"; version="1.30.0"; sha256="0lhilrh4xyw1cvqnx4b6g0llm9b1i4l2r476d4hmypkkgl25q8n7"; depends=[Biobase curl data_table digest flowCore flowWorkspace ggplot2 gplots heatmaply httr jsonlite pheatmap plotly preprocessCore R6 Rlabkey rmarkdown scales]; }; + InPAS = derive2 { name="InPAS"; version="2.10.0"; sha256="06a5lqx5ybcyv7szw50x686cib4mwyh9h5fpiqgy4whlxsr8sjiy"; depends=[AnnotationDbi batchtools Biobase Biostrings BSgenome cleanUpdTSeq depmixS4 dplyr flock future future_apply GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges limma magrittr parallelly plyranges preprocessCore readr reshape2 RSQLite S4Vectors]; }; + InTAD = derive2 { name="InTAD"; version="1.22.0"; sha256="01vwvv6cggflgwskb8kyf0izzz0dq1yyk05d9k2c6z59gqindi2n"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggpubr IRanges mclust MultiAssayExperiment qvalue rtracklayer S4Vectors SummarizedExperiment]; }; + IntEREst = derive2 { name="IntEREst"; version="1.26.0"; sha256="0gs7bcizksc16xw6wig5af28whv31qf09wh4sj5s4i37642rs7zf"; depends=[BiocGenerics BiocParallel Biostrings DBI DESeq2 DEXSeq edgeR GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges IRanges RMySQL Rsamtools S4Vectors seqinr seqLogo SummarizedExperiment]; }; + IntOMICS = derive2 { name="IntOMICS"; version="1.2.0"; sha256="1qhni8p8zap9szi499jrdxkacdrb7vdd4va5h4n0kdi4qr80vrzh"; depends=[bestNormalize bnlearn bnstruct cowplot ggplot2 ggraph gplots igraph matrixStats numbers RColorBrewer rlang SummarizedExperiment]; }; + InterCellar = derive2 { name="InterCellar"; version="2.8.0"; sha256="1xbrvjy7pdb94lb0arcwj1h4r6skj7cv0diwialwpi8mi3nzwj9j"; depends=[biomaRt circlize colorspace colourpicker ComplexHeatmap config data_table dendextend dplyr DT factoextra fmsb fs ggplot2 golem htmltools htmlwidgets igraph plotly plyr readxl rlang scales shiny shinyalert shinycssloaders shinydashboard shinyFeedback shinyFiles signal tibble tidyr umap visNetwork wordcloud2]; }; + InterMineR = derive2 { name="InterMineR"; version="1.24.0"; sha256="1rfqzmc7pl13g5n41rdcxy4k69qhmwgq8jci1v6j8cppzqi641ni"; depends=[Biostrings GenomicRanges httr igraph IRanges RCurl RJSONIO S4Vectors sqldf SummarizedExperiment XML xml2]; }; + InteractionSet = derive2 { name="InteractionSet"; version="1.30.0"; sha256="0mpgxcwhb734pyn6bj93xknb704yrjkprxpa7kqwl24rbqyjydqs"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix Rcpp S4Vectors SummarizedExperiment]; }; + InteractiveComplexHeatmap = derive2 { name="InteractiveComplexHeatmap"; version="1.10.0"; sha256="14hyq6szlj4xpd8yxwfli61g1mrc5s5r4m9l9c788z42jzq5jkkp"; depends=[clisymbols ComplexHeatmap digest fontawesome GetoptLong htmltools IRanges jsonlite kableExtra RColorBrewer S4Vectors shiny svglite]; }; + IntramiRExploreR = derive2 { name="IntramiRExploreR"; version="1.24.0"; sha256="1hk6za3csxzz7qz6vqbm7iyqgrbk73p06mallincqzwx1dnzdpj7"; depends=[FGNet igraph knitr]; }; + IsoBayes = derive2 { name="IsoBayes"; version="1.0.1"; sha256="134ncn81zd56k8qg92h5pz1cr07pij73bmam23h4ddxv22vahcwb"; depends=[data_table doParallel doRNG foreach ggplot2 glue HDInterval iterators Rcpp RcppArmadillo S4Vectors SummarizedExperiment]; }; + IsoCorrectoR = derive2 { name="IsoCorrectoR"; version="1.20.0"; sha256="0q14xj8ai88z8w6rywkm59hwhgqljihl2g5lgrrdzi2wh47ab4z5"; depends=[dplyr magrittr pracma quadprog readr readxl stringr tibble WriteXLS]; }; + IsoCorrectoRGUI = derive2 { name="IsoCorrectoRGUI"; version="1.18.0"; sha256="1h6p9k0y1id6n2gjybyj44hpw32v74yyhcs5iy4qzhd62nmdalwr"; depends=[IsoCorrectoR readxl tcltk2]; }; + IsoformSwitchAnalyzeR = derive2 { name="IsoformSwitchAnalyzeR"; version="2.2.0"; sha256="1yin2jv06g3jrzadq6yjcr14jz1zzwyxipzna5csgr013dkkrl8h"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome DBI DEXSeq dplyr edgeR futile_logger GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges limma magrittr pfamAnalyzeR plyr RColorBrewer RCurl readr reshape2 rtracklayer S4Vectors satuRn stringr SummarizedExperiment sva tibble tidyr tximeta tximport VennDiagram XVector]; }; + KBoost = derive2 { name="KBoost"; version="1.10.0"; sha256="1sbd104v35wbx148csavk6d1vi8nh53knj4jvl0454q49x2dlchi"; depends=[]; }; + KCsmart = derive2 { name="KCsmart"; version="2.60.0"; sha256="081j7n4c03pvwq5p99cb9y9acy13isvcrrnk5yqrxzyh95n13wbr"; depends=[BiocGenerics KernSmooth multtest siggenes]; }; + KEGGREST = derive2 { name="KEGGREST"; version="1.42.0"; sha256="05fc1i1bcdvvy4mr4m2cdqxd3jrj1rxkxy7c43yrliv5dlikyb07"; depends=[Biostrings httr png]; }; + KEGGgraph = derive2 { name="KEGGgraph"; version="1.62.0"; sha256="0i9iqr87mqih0rkbjx3wa383x4yfyzpcb0b0xzairbqgygvcq4kl"; depends=[graph RCurl Rgraphviz XML]; }; + KEGGlincs = derive2 { name="KEGGlincs"; version="1.28.0"; sha256="06rgmq28g1hw8r6isn1f5y9jiszmckvbicdlkna9x9wh9jzp0q5i"; depends=[AnnotationDbi gtools hgu133a_db httr igraph KEGGgraph KEGGREST KOdata org_Hs_eg_db plyr RJSONIO XML]; }; + KinSwingR = derive2 { name="KinSwingR"; version="1.20.0"; sha256="04vy8da4cza30ivf8jbrmysz71i7dwp787fazn4xr83jvs5vxgp5"; depends=[BiocParallel data_table sqldf]; }; + KnowSeq = derive2 { name="KnowSeq"; version="1.16.0"; sha256="0665wwm8skhh7vqgg2kx2izbd3ks0zkar1m73fqj33rx7fjrqbzb"; depends=[caret cqn e1071 edgeR ggplot2 gridExtra Hmisc httr jsonlite kernlab limma praznik R_utils randomForest reshape2 rlist rmarkdown stringr sva XML]; }; + LACE = derive2 { name="LACE"; version="2.6.0"; sha256="0q563ysm6rs6708gnc1qpdz9m9265wamf068pgp162mvjbg7jxs9"; depends=[biomaRt bsplus callr configr curl data_table data_tree doParallel dplyr DT forcats foreach fs ggplot2 htmltools htmlwidgets igraph jsonlite logr Matrix purrr RColorBrewer readr Rfast shiny shinyBS shinydashboard shinyFiles shinyjs shinythemes shinyvalidate sortable stringi stringr SummarizedExperiment svglite tidyr]; }; + LBE = derive2 { name="LBE"; version="1.70.0"; sha256="0fvjgrxdkw6nnrbgk554cgmmlz33gia15pmsmwkv98phrwhhv6cr"; depends=[]; }; + LEA = derive2 { name="LEA"; version="3.14.0"; sha256="1rhlrcp9rzf64rkabgk3gd8jqdg8ldwpkxvpfb6g49bgpkg1h6b1"; depends=[]; }; + LOBSTAHS = derive2 { name="LOBSTAHS"; version="1.28.0"; sha256="0gbyd341hjsvkl9axb8mpyyaaks8kl5s10k1kx1hzgrfhcrm0s6d"; depends=[CAMERA xcms]; }; + LOLA = derive2 { name="LOLA"; version="1.32.0"; sha256="0w3c1bywch6629h8dbjvi24mrpxkwbaj5vaxrvyvx7a31k04zjqc"; depends=[BiocGenerics data_table GenomicRanges IRanges reshape2 S4Vectors]; }; + LPE = derive2 { name="LPE"; version="1.76.0"; sha256="0ihsyamx3zk0830bs2bfpl4ich30cs6hmr7q2l6x6b5ycgsvbdq9"; depends=[]; }; + LPEadj = derive2 { name="LPEadj"; version="1.62.0"; sha256="17m5lclr2rwb2z0i230gsxkccysmpcvsp4kxjpdjhvnikfm46ssp"; depends=[LPE]; }; + LRBaseDbi = derive2 { name="LRBaseDbi"; version="2.12.0"; sha256="144661h85i69nvn6iv9gp8ck0grir431g0alakmr7p957xiplnd3"; depends=[AnnotationDbi Biobase DBI RSQLite]; }; + LRcell = derive2 { name="LRcell"; version="1.10.0"; sha256="19p5vwsr1hq6p02g6alysm7maalrlpg8lg8r76ffsbh1wqj776fp"; depends=[AnnotationHub BiocParallel dplyr ExperimentHub ggplot2 ggrepel magrittr]; }; + LedPred = derive2 { name="LedPred"; version="1.36.0"; sha256="1nfsqz03xaychi6qf4cdjqb28253hdnswl6wvc3jgnjilh8xc8mm"; depends=[akima e1071 ggplot2 irr jsonlite plot3D plyr RCurl ROCR testthat]; }; + LinTInd = derive2 { name="LinTInd"; version="1.6.0"; sha256="0bk7l81x8rm13ps8n1jvd20fnl9si1139r61vzb5z0l3h3v1m9da"; depends=[ape BiocGenerics Biostrings cowplot data_tree dplyr ggnewscale ggplot2 ggtree IRanges networkD3 pheatmap purrr reshape2 rlist S4Vectors stringdist stringr]; }; + LineagePulse = derive2 { name="LineagePulse"; version="1.21.0"; sha256="09x1i7slysqf3dpjzck6rgfzhyswaj0kk8i047yscg8fcaksbmqg"; depends=[BiocParallel circlize ComplexHeatmap ggplot2 gplots knitr Matrix RColorBrewer SingleCellExperiment SummarizedExperiment]; }; + LinkHD = derive2 { name="LinkHD"; version="1.16.0"; sha256="1ic1vymbp2cxxq0xkh1szw8ldc197599511azc7k6h4d42rbw74f"; depends=[cluster data_table emmeans ggplot2 ggpubr gridExtra MultiAssayExperiment reshape2 rio scales vegan]; }; + Linnorm = derive2 { name="Linnorm"; version="2.26.0"; sha256="1ax5zmby8zw0mgxjd8yhlk4ai0s03zq59qwzqgv8zqlms8yjpvs2"; depends=[amap apcluster ellipse fastcluster fpc ggdendro ggplot2 gmodels igraph limma MASS mclust Rcpp RcppArmadillo Rtsne statmod vegan zoo]; }; + LiquidAssociation = derive2 { name="LiquidAssociation"; version="1.56.0"; sha256="00k20l2cw54wzji18jdf9716xpza0h1pdh7n8d0v3krvlmiiz3zb"; depends=[Biobase geepack org_Sc_sgd_db yeastCC]; }; + LoomExperiment = derive2 { name="LoomExperiment"; version="1.20.0"; sha256="0mwc5f15s5lw36jdjz3pzm0d5bck0hbsalbcyy1zyq0pqa2lyl7k"; depends=[BiocIO DelayedArray GenomicRanges HDF5Array Matrix rhdf5 S4Vectors SingleCellExperiment stringr SummarizedExperiment]; }; + LymphoSeq = derive2 { name="LymphoSeq"; version="1.30.0"; sha256="18g6s1fd274qrrn20w02hqav5ff53g5c61v1ygv12z370n835g42"; depends=[Biostrings circlize data_table dplyr ggplot2 ggtree ineq LymphoSeqDB msa phangorn plyr RColorBrewer reshape stringdist UpSetR VennDiagram]; }; + M3C = derive2 { name="M3C"; version="1.24.0"; sha256="0q6npc5pglmhzm9270pi11kbp5wg3ncvflp4rhv3w778qza2zlk1"; depends=[cluster corpcor doParallel doSNOW foreach ggplot2 Matrix matrixcalc Rtsne umap]; }; + M3Drop = derive2 { name="M3Drop"; version="1.28.0"; sha256="0xn458kc7hwhlf1jfzz6x5wlzb5pps2fa2n52jsp9zifsrk2zpkz"; depends=[bbmle gplots Hmisc irlba Matrix matrixStats numDeriv RColorBrewer reldist statmod]; }; + MACSQuantifyR = derive2 { name="MACSQuantifyR"; version="1.16.0"; sha256="0y9xjk06lxf9bwlpzf73xj175858hpdgcyqdk9qjzlik0g1aksd1"; depends=[ggplot2 ggrepel gridExtra lattice latticeExtra png prettydoc readxl rmarkdown rvest xml2]; }; + MACSr = derive2 { name="MACSr"; version="1.10.0"; sha256="1mnbxhmgh8ca5drspvsskf554kp31a2s35f9f05j49zzjrzma74p"; depends=[AnnotationHub basilisk ExperimentHub reticulate S4Vectors]; }; + MADSEQ = derive2 { name="MADSEQ"; version="1.28.0"; sha256="10bgj9z1l0l9nmz8hdag9ngy9xwz1hj1jvhk26y2pqli6d6448yx"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 coda GenomeInfoDb GenomicAlignments GenomicRanges IRanges preprocessCore rjags Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation vcfR VGAM zlibbioc]; }; + MAGAR = derive2 { name="MAGAR"; version="1.10.0"; sha256="1yk3c2gkkvbzvf4svixbg5mnb7hrdiyxprf9ixaqhhs2jic88cms"; depends=[argparse bigstatsr crlmm data_table doParallel ff HDF5Array igraph impute jsonlite plyr reshape2 rjson RnBeads RnBeads_hg19 snpStats UpSetR]; }; + MAGeCKFlute = derive2 { name="MAGeCKFlute"; version="2.6.0"; sha256="0bjylxdaw5695673yqrgx37s475w035djr9az3s1z9xd89ksv0xr"; depends=[Biobase clusterProfiler depmap DOSE enrichplot ggplot2 ggrepel gridExtra msigdbr pathview reshape2]; }; + MAI = derive2 { name="MAI"; version="1.8.0"; sha256="0wiax2lij7k00havwzja120fvn65wkq57mv7kvwkgfya97k73g27"; depends=[caret doParallel e1071 foreach future future_apply missForest pcaMethods S4Vectors SummarizedExperiment tidyverse]; }; + MAIT = derive2 { name="MAIT"; version="1.36.0"; sha256="1kljw50mzdmd9b35qjkagzilhhdf4dzv8n96g36jj7k4952d1h6g"; depends=[agricolae CAMERA caret class e1071 gplots MASS pls plsgenomics Rcpp xcms]; }; + MANOR = derive2 { name="MANOR"; version="1.74.0"; sha256="10zf6c1vx6cp4wg6axpmbpxk2hlmf6mga7rdh765fznwb71r4h0x"; depends=[GLAD]; }; + MAST = derive2 { name="MAST"; version="1.28.0"; sha256="17iycxxp6jb56ra21546kh2zlrm8by2vrlvsxvx8xmbpk32fb4lp"; depends=[abind Biobase BiocGenerics data_table ggplot2 Matrix plyr progress reshape2 S4Vectors SingleCellExperiment stringr SummarizedExperiment]; }; + MBASED = derive2 { name="MBASED"; version="1.36.0"; sha256="0gdjpp8g1wbyzriv3mgny0hxnas71gdv8f1mykmja65wr9lhkx8x"; depends=[BiocGenerics BiocParallel GenomicRanges RUnit SummarizedExperiment]; }; + MBAmethyl = derive2 { name="MBAmethyl"; version="1.36.0"; sha256="022w2lvdzrwvnrcr80gmnypxk0djyp3w5qi4ml1bkh1ixhdbic47"; depends=[]; }; + MBCB = derive2 { name="MBCB"; version="1.56.0"; sha256="1hjylg7rkynwgxvh07rcwzg1awfcv7xvg2l5pyzyl7fxgczmn7px"; depends=[preprocessCore tcltk2]; }; + MBECS = derive2 { name="MBECS"; version="1.6.0"; sha256="1j7vb26n2fnf5fkk8hfz552yx91g4zg719alhg4hg2vvjd1qx2l1"; depends=[cluster dplyr ggplot2 gridExtra limma lme4 lmerTest magrittr Matrix pheatmap phyloseq rmarkdown ruv sva tibble tidyr vegan]; }; + MBQN = derive2 { name="MBQN"; version="2.14.0"; sha256="0shy9b1qj5fr7qs6c03ygqs3whv2d4ik59qxsgmcs880rhxxw4x2"; depends=[BiocFileCache ggplot2 limma PairedData preprocessCore rappdirs RCurl rmarkdown SummarizedExperiment xml2]; }; + MBttest = derive2 { name="MBttest"; version="1.30.0"; sha256="1m7byr93kbb7d2nx3cv2v72vg8rwvr5b59n6wpdlx1lg167dlp2k"; depends=[gplots gtools]; }; + MCbiclust = derive2 { name="MCbiclust"; version="1.26.0"; sha256="1jbhlykxb0l28mmlzmh4pa85jh95jd9imvy2jp7rpkgmjdi8ndrb"; depends=[AnnotationDbi BiocParallel cluster GGally ggplot2 GO_db org_Hs_eg_db scales WGCNA]; }; + MDTS = derive2 { name="MDTS"; version="1.22.0"; sha256="1d898xiwjmn1lhy6gdav7p0f7w1wrhi5545j6fi835nhfw53mphj"; depends=[Biostrings DNAcopy GenomicAlignments GenomicRanges IRanges Rsamtools stringr]; }; + MEAL = derive2 { name="MEAL"; version="1.32.0"; sha256="0vwb3wag7hsi25c9r4j1yp0lh5ssgnrdbw3f5gbkxswd3vi8sh2p"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 Gviz IRanges isva limma matrixStats minfi missMethyl MultiDataSet permute S4Vectors SmartSVA SummarizedExperiment vegan]; }; + MEAT = derive2 { name="MEAT"; version="1.14.0"; sha256="0hd1yv7vfxifhadn6v8wvri96j0v3b3wma0245ky9svh79baswd0"; depends=[dplyr dynamicTreeCut glmnet impute minfi RPMM stringr SummarizedExperiment tibble wateRmelon]; }; + MEB = derive2 { name="MEB"; version="1.16.0"; sha256="18vf3cyw5ld7a95ksa4g2v0rrcrdk0dyw0jjiyywd1kmnkkv8s8g"; depends=[e1071 edgeR scater SingleCellExperiment SummarizedExperiment wrswoR]; }; + MEDIPS = derive2 { name="MEDIPS"; version="1.54.0"; sha256="17girgyqcb6mxwkmbxdg7fn7sg2jddf5xgy7yl11gwa5a3k42ph8"; depends=[biomaRt Biostrings BSgenome DNAcopy edgeR GenomicRanges gtools IRanges preprocessCore Rsamtools rtracklayer]; }; + MEDME = derive2 { name="MEDME"; version="1.62.0"; sha256="01fyrfx7mfz2qb0lj92cxj2piy78zqfpi7gnw2x2bn4mdjqpqpjh"; depends=[Biostrings drc MASS]; }; + MGFM = derive2 { name="MGFM"; version="1.36.0"; sha256="02a1w5m9840s0x700dwvpvq7f96fyygdjpsrcfxdfsr491zamc2r"; depends=[annotate AnnotationDbi]; }; + MGFR = derive2 { name="MGFR"; version="1.28.0"; sha256="08k1as0wh1a2z1d2m659y6khl2cqa6v6p6sxf913ak4kk3ibab0a"; depends=[annotate biomaRt]; }; + MICSQTL = derive2 { name="MICSQTL"; version="1.0.0"; sha256="1q711hvhf1cjvkyvifxcl5xmyrr4rxj6djxiqqdsyrwffsj9iy7g"; depends=[BiocParallel dirmult ggplot2 ggpubr ggridges glue magrittr nnls purrr S4Vectors SummarizedExperiment TCA TOAST]; }; + MIRA = derive2 { name="MIRA"; version="1.24.0"; sha256="03srd513r7l5xpvbv03vksddw1hqiwpqxzims85jvzdl2fvyikx2"; depends=[Biobase BiocGenerics bsseq data_table GenomicRanges ggplot2 IRanges S4Vectors]; }; + MLInterfaces = derive2 { name="MLInterfaces"; version="1.82.0"; sha256="0aga7xhx5d1xp09n2im7yqi9y1b3v22l554hi35ahg2lwwvxjiw1"; depends=[annotate Biobase BiocGenerics cluster fpc gbm gdata genefilter ggvis hwriter magrittr MASS mlbench pls RColorBrewer Rcpp rpart sfsmisc shiny SummarizedExperiment threejs]; }; + MLP = derive2 { name="MLP"; version="1.50.0"; sha256="0hh6q2x841dhdig1f2fg4y8wn1q25lvdznh0630qsz9ciaig94wh"; depends=[AnnotationDbi gplots]; }; + MLSeq = derive2 { name="MLSeq"; version="2.20.0"; sha256="1q6qwizqyfplyvkhbkp4m4ssmglkr26xdp8r79ana06hrc3k6hin"; depends=[Biobase caret DESeq2 edgeR foreach ggplot2 limma pamr plyr sSeq SummarizedExperiment testthat VennDiagram xtable]; }; + MMDiff2 = derive2 { name="MMDiff2"; version="1.30.0"; sha256="0lamw826kl57ffascr54cvjmxi70gqx21nnsfhdadbkqvzrcfwyh"; depends=[Biobase Biostrings BSgenome GenomicRanges ggplot2 locfit RColorBrewer Rsamtools S4Vectors shiny]; }; + MMUPHin = derive2 { name="MMUPHin"; version="1.16.0"; sha256="0lhvsx5yjvqh5d3h860sv8cf3h73nrzvljpkqrd9ks0irc4gcm6d"; depends=[cowplot dplyr fpc ggplot2 igraph Maaslin2 metafor stringr tidyr]; }; + MODA = derive2 { name="MODA"; version="1.28.0"; sha256="1axm6lfg6wv3rm35ajsc4cjaqbriyb4hzj3sr8ks6h131fn7sjw2"; depends=[AMOUNTAIN cluster dynamicTreeCut igraph RColorBrewer WGCNA]; }; + MOFA2 = derive2 { name="MOFA2"; version="1.12.1"; sha256="1vryfj2ikc0c3md2pg4jyg0n3jj6lh0rwm9069v42172pbwc0ikp"; depends=[basilisk corrplot cowplot DelayedArray dplyr forcats ggplot2 ggrepel HDF5Array magrittr pheatmap RColorBrewer reshape2 reticulate rhdf5 Rtsne stringi tidyr uwot]; }; + MOGAMUN = derive2 { name="MOGAMUN"; version="1.12.0"; sha256="0x7waxamd7hykjcphx4xhl392rjfp2pkhn98gpg60224am7yclav"; depends=[BiocParallel igraph RCy3 RUnit stringr]; }; + MOMA = derive2 { name="MOMA"; version="1.14.0"; sha256="1ksh2ikbzppcdncy0fi09kpkm13jrmnv7azpgjy51qns0525c9fc"; depends=[circlize cluster ComplexHeatmap dplyr ggplot2 magrittr MKmisc MultiAssayExperiment qvalue RColorBrewer readr reshape2 rlang stringr tibble tidyr]; }; + MOSim = derive2 { name="MOSim"; version="1.16.0"; sha256="0pwxkkkbw65142xp26lig3xmfcc11sb1kz68qnif716jqzd2y5a9"; depends=[Biobase dplyr ggplot2 HiddenMarkov IRanges lazyeval matrixStats purrr rlang S4Vectors scales stringi stringr tibble tidyr zoo]; }; + MPFE = derive2 { name="MPFE"; version="1.38.0"; sha256="08y87lg3xysycya2x5xz9ybm3x4vz7kblan9xaa42nf6fy92fs5i"; depends=[]; }; + MPRAnalyze = derive2 { name="MPRAnalyze"; version="1.20.0"; sha256="06v3lppp2qxpj0snrn42yyljkpsb5xd7gd6ziiiizs62wahg6g29"; depends=[BiocParallel progress SummarizedExperiment]; }; + MQmetrics = derive2 { name="MQmetrics"; version="1.10.0"; sha256="15jkmdj2k5h8vbi332y7b4xzm2330g2s13l6lf2d1v9pg5aqrisq"; depends=[cowplot dplyr ggforce gghalves ggplot2 ggpubr ggrepel gridExtra gtable knitr magrittr plyr purrr RColorBrewer readr reshape2 rlang rmarkdown scales stringr tidyr]; }; + MSA2dist = derive2 { name="MSA2dist"; version="1.6.0"; sha256="1y1d6rp9bcx9acc21rak0dh93dm06f7qv6zzy5nqd1dgs77vhb1s"; depends=[ape Biostrings doParallel dplyr foreach GenomicRanges IRanges Rcpp RcppThread rlang seqinr stringi stringr tibble tidyr]; }; + MSPrep = derive2 { name="MSPrep"; version="1.12.0"; sha256="1fbnvsrs1mka3ssr9imk0zgsjjrbl5nczhg1g8hzmvw7dj5fijhi"; depends=[crmn dplyr magrittr missForest pcaMethods preprocessCore rlang S4Vectors stringr SummarizedExperiment sva tibble tidyr VIM]; }; + MSnID = derive2 { name="MSnID"; version="1.36.0"; sha256="1hmfh7v7p5d741x2wh1njqwkmfmf3xmwkqy88kalrcjzrdwfpv9b"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics BiocStyle Biostrings data_table doParallel dplyr foreach ggplot2 iterators msmsTests MSnbase mzID mzR ProtGenerics purrr R_cache Rcpp reshape2 rlang RUnit stringr tibble xtable]; }; + MSnbase = derive2 { name="MSnbase"; version="2.28.1"; sha256="1622mmm5n8yl4qjq8bda7689qdfz1rhyxyh8s3q5475al1d0mpsl"; depends=[affy Biobase BiocGenerics BiocParallel digest ggplot2 impute IRanges lattice MALDIquant MASS MsCoreUtils mzID mzR pcaMethods plyr ProtGenerics Rcpp S4Vectors scales vsn XML]; }; + MSstats = derive2 { name="MSstats"; version="4.10.0"; sha256="153vg9kzi54lk9fmycw7rfmj9rixyvq6lsn76dp90m353hba476d"; depends=[checkmate data_table ggplot2 ggrepel gplots limma lme4 marray MASS MSstatsConvert preprocessCore Rcpp RcppArmadillo statmod survival]; }; + MSstatsBig = derive2 { name="MSstatsBig"; version="1.0.0"; sha256="0gaf22l8ccqff4vfy72s6swfp0p6675a83n1himpmh0nyb1mkwal"; depends=[arrow DBI dplyr MSstats MSstatsConvert readr sparklyr]; }; + MSstatsConvert = derive2 { name="MSstatsConvert"; version="1.12.0"; sha256="1xp57pf0j4ndy33lyr7i08qrsfqnsnywb5as0fjfpx1ncw44na4c"; depends=[checkmate data_table log4r stringi]; }; + MSstatsLOBD = derive2 { name="MSstatsLOBD"; version="1.10.0"; sha256="1pvpvp3m76vrc1kwl8rniglkzqg8d6dv8kjidmp7mbpixljfa9yq"; depends=[ggplot2 minpack_lm Rcpp]; }; + MSstatsLiP = derive2 { name="MSstatsLiP"; version="1.8.1"; sha256="1n9z1xirkkglvivc19zqqvk5jwgzsm9424phldfj080p0aibjkmn"; depends=[Biostrings checkmate data_table dplyr factoextra ggplot2 ggpubr gridExtra MSstats MSstatsConvert MSstatsPTM purrr Rcpp scales stringr tibble tidyr tidyverse]; }; + MSstatsPTM = derive2 { name="MSstatsPTM"; version="2.4.1"; sha256="1ab2igyg5fgrs15m0i0dwqx0ds1fkqw7h0ls90j78qbzx3igqm5d"; depends=[Biostrings checkmate data_table dplyr ggplot2 ggrepel gridExtra MSstats MSstatsConvert MSstatsTMT Rcpp stringi stringr]; }; + MSstatsQC = derive2 { name="MSstatsQC"; version="2.20.0"; sha256="0lf12y4v4fjm105lnpvh832y018cnn7zxkvjncb4xy5qgvy59n42"; depends=[dplyr ggExtra ggplot2 MSnbase plotly qcmetrics]; }; + MSstatsQCgui = derive2 { name="MSstatsQCgui"; version="1.22.0"; sha256="033ld5kns6w0gi8h7fzwvhv297kk9dqay31i1336ab9zss3l7wyp"; depends=[dplyr ggExtra gridExtra MSstatsQC plotly shiny]; }; + MSstatsShiny = derive2 { name="MSstatsShiny"; version="1.4.2"; sha256="0nk9hmzw3zsi2kjal505js5xj50xfxxcailhwfjig1jrpgqb4cq1"; depends=[data_table dplyr DT ggplot2 ggrepel gplots Hmisc htmltools marray MSstats MSstatsConvert MSstatsPTM MSstatsTMT readxl shiny shinyBS shinybusy shinyjs tidyr uuid]; }; + MSstatsTMT = derive2 { name="MSstatsTMT"; version="2.10.0"; sha256="00ykgnzwx15szwiqlcdfpnfh40mryj3zlbix3pysxj44svvz1vz4"; depends=[checkmate data_table ggplot2 limma lme4 lmerTest MSstats MSstatsConvert]; }; + MVCClass = derive2 { name="MVCClass"; version="1.76.0"; sha256="16finp6q89n6x5q2v1khpfp5ys7d4dvlh3kacv5qbdh1bsb3fpax"; depends=[]; }; + MWASTools = derive2 { name="MWASTools"; version="1.26.0"; sha256="0h7c0w9adxrrbn7kd1p7pldcgwv3hmq957zkaa1q9asgdzmf4jd5"; depends=[boot car ComplexHeatmap ggplot2 glm2 gridExtra igraph KEGGgraph KEGGREST ppcor qvalue RCurl SummarizedExperiment]; }; + Maaslin2 = derive2 { name="Maaslin2"; version="1.16.0"; sha256="1d95dv46b36ncwb7zdn0wvshg4v73qjfs3hij0jmbkkxvf2il9iq"; depends=[biglm car chemometrics cplm data_table dplyr edgeR ggplot2 glmmTMB hash lme4 lmerTest logging MASS metagenomeSeq optparse pbapply pcaPP pheatmap pscl robustbase tibble vegan]; }; + Macarron = derive2 { name="Macarron"; version="1.6.0"; sha256="19zn8s6d6g9zaid77nkpy0fcvmvkxpgjzj435p8lj068mw4pi9b7"; depends=[BiocParallel data_table DelayedArray dynamicTreeCut ff logging Maaslin2 plyr psych RCurl RJSONIO SummarizedExperiment WGCNA xml2]; }; + MantelCorr = derive2 { name="MantelCorr"; version="1.72.0"; sha256="0jzng0vwsm47kjrvig57zkynvz71kz4xvi4fn4an71927mgh52j0"; depends=[]; }; + MassArray = derive2 { name="MassArray"; version="1.54.0"; sha256="1d1b1rvicm2p96qz47svwxl1jky37p7653545fh6j8nhzqlk68ng"; depends=[]; }; + MassSpecWavelet = derive2 { name="MassSpecWavelet"; version="1.68.0"; sha256="044rz2xsz2v8i9ha20hxn2cwf7wa74p5f25jql8ancp6r3gim9sy"; depends=[]; }; + MatrixGenerics = derive2 { name="MatrixGenerics"; version="1.14.0"; sha256="14x5jib5xh2006lg96v3b9n2pnbjcbsd5igqybqsv0c53rk9394d"; depends=[matrixStats]; }; + MatrixQCvis = derive2 { name="MatrixQCvis"; version="1.10.0"; sha256="0drpj0n1rvm77ls1rjkp17hi5x4rhwvjs6mywscsphn57xkjwjv9"; depends=[ComplexHeatmap dplyr ExperimentHub ggplot2 Hmisc htmlwidgets impute imputeLCMD limma MASS pcaMethods plotly proDA rlang rmarkdown Rtsne shiny shinydashboard shinyhelper shinyjs SummarizedExperiment tibble tidyr umap UpSetR vsn]; }; + MatrixRider = derive2 { name="MatrixRider"; version="1.34.0"; sha256="021z613zvk00j3bh4gx2lml4b2lbs7s5x582f7yb0x8k9mi1wij3"; depends=[Biostrings IRanges S4Vectors TFBSTools XVector]; }; + MeSHDbi = derive2 { name="MeSHDbi"; version="1.38.0"; sha256="132lmrfkjsdivavzksvbiwfskbmvybrgcm2ym2b9gghinldyfjr8"; depends=[AnnotationDbi Biobase RSQLite]; }; + MeasurementError_cor = derive2 { name="MeasurementError.cor"; version="1.74.0"; sha256="0hpcd026pw9xk0g2z25b7236daimy9rn21l3v58icrdzkgxk2xif"; depends=[]; }; + Melissa = derive2 { name="Melissa"; version="1.18.0"; sha256="0zz27dff78p5hysfvwqjjjjl6x5d5z222pfdx9cni4qnib4v1s36"; depends=[assertthat BiocStyle BPRMeth cowplot data_table doParallel foreach GenomicRanges ggplot2 magrittr matrixcalc mclust MCMCpack mvtnorm ROCR truncnorm]; }; + Mergeomics = derive2 { name="Mergeomics"; version="1.30.0"; sha256="0q324acmy6g02wq6s9qw0n643dfjl7cf9v1y7crk27liaqm0sj03"; depends=[]; }; + MesKit = derive2 { name="MesKit"; version="1.12.0"; sha256="16gwrj7i70bnfp69vaal08sq8brcwjj48jaaizz5ch8i9rwhwyb6"; depends=[AnnotationDbi ape Biostrings circlize ComplexHeatmap cowplot data_table dplyr ggplot2 ggrepel ggridges IRanges mclust phangorn pracma RColorBrewer S4Vectors tidyr]; }; + MetCirc = derive2 { name="MetCirc"; version="1.32.0"; sha256="1ilv3g6p1mjss6a0jc7ik2kr4h3gjsm1z6aawvs9wq4jcpy2d8r5"; depends=[amap circlize ggplot2 MsCoreUtils S4Vectors scales shiny Spectra]; }; + MetID = derive2 { name="MetID"; version="1.20.0"; sha256="13d5d6fansnqsv0bm4mxz6jwb41kkn0ay3p6s6w6j8xksaafl7ql"; depends=[ChemmineR devtools igraph Matrix stringr]; }; + MetNet = derive2 { name="MetNet"; version="1.20.0"; sha256="17086dx5zdcp5lflhrzfpcjxbimrkq4ylxgiwjb6r2qwkhx9vq44"; depends=[BiocParallel bnlearn corpcor dplyr GeneNet GENIE3 ggplot2 parmigene psych rlang S4Vectors stabs SummarizedExperiment tibble tidyr]; }; + MetaCyto = derive2 { name="MetaCyto"; version="1.24.0"; sha256="17fwdzxp9v9sm4rbyhh2zv5jhx1ax8cxls2b3g3yp9xk2hgwf816"; depends=[cluster fastcluster flowCore FlowSOM ggplot2 metafor tidyr]; }; + MetaNeighbor = derive2 { name="MetaNeighbor"; version="1.22.0"; sha256="0y8nk9jq0z48phg13mf6hsfg8l54w6z6b67g0k1c9gmsb7aqq04d"; depends=[beanplot dplyr ggplot2 gplots igraph Matrix matrixStats RColorBrewer SingleCellExperiment SummarizedExperiment tibble tidyr]; }; + MetaPhOR = derive2 { name="MetaPhOR"; version="1.4.0"; sha256="1nzwhjcs35bz626b1i3akdfvvshmw3aj6ghrgsfhir4fw8rvdig5"; depends=[clusterProfiler ggplot2 ggrepel pheatmap RCy3 RecordLinkage stringr]; }; + MetaboAnnotation = derive2 { name="MetaboAnnotation"; version="1.6.1"; sha256="1galm8z0gz6mkqy9gr6ynhbpxbxngbrvg6p6kp3mywn6h9m7p8vv"; depends=[AnnotationHub BiocGenerics BiocParallel CompoundDb MetaboCoreUtils MsCoreUtils ProtGenerics QFeatures S4Vectors Spectra SummarizedExperiment]; }; + MetaboCoreUtils = derive2 { name="MetaboCoreUtils"; version="1.10.0"; sha256="0bs24dwqlm8isp231jds51l7v16q0gjli1qmhjxyva3qmi5yb4dl"; depends=[MsCoreUtils]; }; + MetaboSignal = derive2 { name="MetaboSignal"; version="1.32.1"; sha256="1x28992n37fxqhxi9kaj80457lr8dzy780k8ja27gniid4x20gdm"; depends=[AnnotationDbi biomaRt EnsDb_Hsapiens_v75 hpar igraph KEGGgraph KEGGREST MWASTools mygene org_Hs_eg_db RCurl]; }; + MethPed = derive2 { name="MethPed"; version="1.30.0"; sha256="1xhaf7zhwga86max98hi5zq4d7dl8rcvky3p9pxzw7ld5s6n9r2j"; depends=[Biobase randomForest]; }; + MethReg = derive2 { name="MethReg"; version="1.12.0"; sha256="1hql25dlvr7f923zngyymacdpz3zvsrzzvmc4rdc5a7w4y7ibl2n"; depends=[AnnotationHub DelayedArray dplyr ExperimentHub GenomicRanges ggplot2 ggpubr IRanges MASS Matrix plyr progress pscl readr rlang S4Vectors sesame sesameData sfsmisc stringr SummarizedExperiment tibble tidyr]; }; + MethTargetedNGS = derive2 { name="MethTargetedNGS"; version="1.34.0"; sha256="05s8zpiqpw5qx5k2qf3vkxj69ag67gkl5mb8dxq7jpwzx51kdvwc"; depends=[Biostrings gplots seqinr stringr]; }; + MethylAid = derive2 { name="MethylAid"; version="1.36.0"; sha256="0mzml9j6f7yycf9747ikkpfvxnwji07h8jhwa9a54ix2d0wyxk3d"; depends=[Biobase BiocGenerics BiocParallel ggplot2 gridBase hexbin matrixStats minfi RColorBrewer shiny SummarizedExperiment]; }; + MethylMix = derive2 { name="MethylMix"; version="2.32.0"; sha256="14qh696ya8g1ay4iwypcacfrvql3iw9b0pp7mn85hb5ppfsrjqfr"; depends=[data_table digest foreach ggplot2 impute limma R_matlab RColorBrewer RCurl RPMM]; }; + MethylSeekR = derive2 { name="MethylSeekR"; version="1.42.0"; sha256="0zsiaqz7awb94cazm3dn1bykwjgaw674q14p05dfgjpyjr7zxdgf"; depends=[BSgenome geneplotter GenomicRanges IRanges mhsmm rtracklayer]; }; + Mfuzz = derive2 { name="Mfuzz"; version="2.62.0"; sha256="0v2l3fi9331lxfam6az265rfk52g4n75hh4rg12ykhp86ihplzpf"; depends=[Biobase e1071 tkWidgets]; }; + MiChip = derive2 { name="MiChip"; version="1.56.0"; sha256="0ig5c7fbgjpabvx7m5x6ki08cg0vdhkyd8g5yb36y2w580qi55sn"; depends=[Biobase]; }; + MiPP = derive2 { name="MiPP"; version="1.74.0"; sha256="1zv1yx310mjzm215vr78765s3dl8srs6mrs20dajnim09qkfshc2"; depends=[Biobase e1071 MASS]; }; + MiRaGE = derive2 { name="MiRaGE"; version="1.44.0"; sha256="1zl1xpcgsdrlfvrfbxlgz9y09mrqv91128xywajbaljrb8r2wqka"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager S4Vectors]; }; + MicrobiomeProfiler = derive2 { name="MicrobiomeProfiler"; version="1.8.0"; sha256="1xl1kx89jgf68gdq23aflgcfyqy584gdm35237dvbqgra4aizlad"; depends=[clusterProfiler config DT enrichplot ggplot2 golem gson htmltools magrittr shiny shinycustomloader shinyWidgets]; }; + MicrobiotaProcess = derive2 { name="MicrobiotaProcess"; version="1.14.0"; sha256="0gkjg3pqdwfxf203wwxags1xh91rb2rry5f6j1y8ah2bsky15z0l"; depends=[ape Biostrings cli coin data_table dplyr dtplyr foreach ggfun ggplot2 ggrepel ggsignif ggstar ggtree ggtreeExtra magrittr MASS patchwork pillar plyr rlang SummarizedExperiment tibble tidyr tidyselect tidytree treeio vegan zoo]; }; + MineICA = derive2 { name="MineICA"; version="1.42.0"; sha256="1czahm7d4cyic4n2h60pkyymapw79v1dd34qc3c6his9h33mhw35"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt cluster colorspace fastICA foreach fpc ggplot2 GOstats graph gtools Hmisc igraph JADE lumi lumiHumanAll_db marray mclust plyr RColorBrewer Rgraphviz scales xtable]; }; + MinimumDistance = derive2 { name="MinimumDistance"; version="1.46.0"; sha256="1gbvjq5xk7q1m10m8mmy2fxrh49q25xik0jmvjln8lng8n98xviz"; depends=[Biobase BiocGenerics data_table DNAcopy ff foreach GenomeInfoDb GenomicRanges IRanges lattice MatrixGenerics matrixStats oligoClasses S4Vectors SummarizedExperiment VanillaICE]; }; + MobilityTransformR = derive2 { name="MobilityTransformR"; version="1.6.0"; sha256="1292fk08zi1zf0hdj56vzdgv9h9nr16vmbzypqkam7lvqqnig49h"; depends=[MetaboCoreUtils MSnbase Spectra xcms]; }; + ModCon = derive2 { name="ModCon"; version="1.10.0"; sha256="179z85phvkpld0hirigx2nf2sy0y0jsqxgml4s1rkircfm6768jw"; depends=[data_table]; }; + Modstrings = derive2 { name="Modstrings"; version="1.18.0"; sha256="1jjawwkvdx02ss2vw4ah2b8psgxr01z6r1rkr2pnkmrp2ma7ygks"; depends=[BiocGenerics Biostrings crayon GenomicRanges IRanges S4Vectors stringi stringr XVector]; }; + MoleculeExperiment = derive2 { name="MoleculeExperiment"; version="1.2.2"; sha256="1863f9ig7j5q7dnrdx3lbwck4g48ac81yqa2054fyhq9xcqaxa2b"; depends=[BiocParallel cli data_table dplyr EBImage ggplot2 magrittr Matrix purrr rhdf5 rjson rlang S4Vectors SpatialExperiment terra]; }; + Moonlight2R = derive2 { name="Moonlight2R"; version="1.0.0"; sha256="02g9dszw9f1q0maxm4ik7p22w4flxv1wx95dy6i541kh26ma61p3"; depends=[AnnotationHub Biobase circlize clusterProfiler ComplexHeatmap doParallel DOSE dplyr easyPubMed foreach fuzzyjoin GenomicRanges GEOquery gplots HiveR magrittr org_Hs_eg_db parmigene purrr qpdf randomForest RColorBrewer readr RISmed rtracklayer seqminer stringr tibble tidyHeatmap tidyr]; }; + MoonlightR = derive2 { name="MoonlightR"; version="1.28.0"; sha256="1zmmxjig7kmfw50p7pdy0v6p3kcfjl655svg8yrlap9y750bywzr"; depends=[Biobase circlize clusterProfiler doParallel DOSE foreach GEOquery gplots HiveR limma parmigene randomForest RColorBrewer RISmed SummarizedExperiment TCGAbiolinks]; }; + Motif2Site = derive2 { name="Motif2Site"; version="1.6.0"; sha256="0s659f3py10d4qwvv325jydix6wjndhwnhi89jip5r8nqp6svih4"; depends=[BiocGenerics Biostrings BSgenome edgeR GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS mixtools S4Vectors]; }; + MotifDb = derive2 { name="MotifDb"; version="1.44.0"; sha256="1z72f5f3sh2ak6zjcfc6j6rblkllmdkli0kb57nwxg2j5hrys3xr"; depends=[BiocGenerics Biostrings GenomicRanges IRanges rtracklayer S4Vectors splitstackshape]; }; + MouseFM = derive2 { name="MouseFM"; version="1.12.0"; sha256="1mr0mm9hsb672sx0zin3mcz4sswydp4j3vb0sqy83169pbkd1050"; depends=[biomaRt curl data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gtools httr IRanges jsonlite reshape2 rlist scales tidyr]; }; + MsBackendMassbank = derive2 { name="MsBackendMassbank"; version="1.10.1"; sha256="18s754jp3nlczmlyva2izr9qf2d9hmpnns3g6rpqy2nxj6zsqxdd"; depends=[BiocParallel DBI IRanges MsCoreUtils ProtGenerics S4Vectors Spectra]; }; + MsBackendMgf = derive2 { name="MsBackendMgf"; version="1.10.0"; sha256="0yzxfar77j0byq91hpnffgzvi3i7c06i2lm0myq4dg2b228hxqyl"; depends=[BiocParallel IRanges MsCoreUtils S4Vectors Spectra]; }; + MsBackendMsp = derive2 { name="MsBackendMsp"; version="1.6.0"; sha256="1z36lsgmn2gbwmmazxj51rf7bkjk6b6kkfpqp71c05k40vc8nx4y"; depends=[BiocParallel IRanges MsCoreUtils S4Vectors Spectra]; }; + MsBackendRawFileReader = derive2 { name="MsBackendRawFileReader"; version="1.8.1"; sha256="0kh740c3d59a8l5b19j1mxyzvpla915a9p7qalmqn6qk5dmnjd30"; depends=[BiocParallel IRanges MsCoreUtils rawrr S4Vectors Spectra]; }; + MsBackendSql = derive2 { name="MsBackendSql"; version="1.2.0"; sha256="1j484ypgcyhgpvb8m97d954bljddl87hw6vzrcz610jbi26m7ia0"; depends=[BiocGenerics BiocParallel data_table DBI IRanges MsCoreUtils progress ProtGenerics S4Vectors Spectra]; }; + MsCoreUtils = derive2 { name="MsCoreUtils"; version="1.14.1"; sha256="0l6rdkpg89pds3n5y4khvaifgbvm38n0vlpi15h97rnk8x461rsz"; depends=[clue MASS Rcpp S4Vectors]; }; + MsDataHub = derive2 { name="MsDataHub"; version="1.2.0"; sha256="03fkikbz13vfcdlca7kassprjjf2gb8jmism3kinpf0x291fc7cr"; depends=[ExperimentHub]; }; + MsExperiment = derive2 { name="MsExperiment"; version="1.4.0"; sha256="06m0i60zh3xjqmsz6dpp0il833xzdfj0fm6xbhl7kmicvfrcnyfg"; depends=[IRanges ProtGenerics QFeatures S4Vectors Spectra SummarizedExperiment]; }; + MsFeatures = derive2 { name="MsFeatures"; version="1.10.0"; sha256="0vpsc7i6j2skn6wba178iy406yvd4p8xf3lq2qmm2inimxl983cs"; depends=[MsCoreUtils ProtGenerics SummarizedExperiment]; }; + MsQuality = derive2 { name="MsQuality"; version="1.2.0"; sha256="14wswjxdfvnlfahwgrzhflfn45r7hlca2ydxw3whr2l3h82iwilb"; depends=[BiocParallel ggplot2 htmlwidgets msdata MsExperiment plotly ProtGenerics rmzqc shiny shinydashboard Spectra stringr tibble tidyr]; }; + MuData = derive2 { name="MuData"; version="1.6.0"; sha256="0fifviwyryms2355gv2m2psn7nkgswzpfa53q4ybrh05qigb2hsx"; depends=[DelayedArray Matrix MultiAssayExperiment rhdf5 S4Vectors SingleCellExperiment SummarizedExperiment]; }; + Mulcom = derive2 { name="Mulcom"; version="1.52.0"; sha256="15svf18a5r4hdpc69wmbihdg6hns5mmzrklh0sd6wjq72z8ij3j5"; depends=[Biobase fields]; }; + MultiAssayExperiment = derive2 { name="MultiAssayExperiment"; version="1.28.0"; sha256="0dmhqymh800mljcpdf817nbyg20czp8y9bg13p3r4bfj6axxckch"; depends=[Biobase BiocBaseUtils BiocGenerics DelayedArray GenomicRanges IRanges S4Vectors SummarizedExperiment tidyr]; }; + MultiBaC = derive2 { name="MultiBaC"; version="1.12.0"; sha256="1mwfibakrxgs3r572bqqqmzq7ys6cs0bpn0wfrcb08ww2197xc4j"; depends=[ggplot2 Matrix MultiAssayExperiment pcaMethods plotrix ropls]; }; + MultiDataSet = derive2 { name="MultiDataSet"; version="1.30.0"; sha256="1n17bpzj95hkljvgqpyv92jm4bk1d3j3mdg7106pb3dffvwv52sk"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggrepel IRanges limma qqman S4Vectors SummarizedExperiment]; }; + MultiMed = derive2 { name="MultiMed"; version="2.24.0"; sha256="0fxfhqyald2z7g3yqw9w1haxhlfvcfrxwlljg2s0a9b7rpryq14r"; depends=[]; }; + MultiRNAflow = derive2 { name="MultiRNAflow"; version="1.0.0"; sha256="1vbqhd3hbna8l643v6q2la90pkbwa8whxvndyb9snqavwbqq2zjy"; depends=[Biobase ComplexHeatmap DESeq2 factoextra FactoMineR ggalluvial ggplot2 ggrepel ggsci gprofiler2 Mfuzz plot3D plot3Drgl plyr RColorBrewer reshape2 rlang S4Vectors scales SummarizedExperiment UpSetR]; }; + MultimodalExperiment = derive2 { name="MultimodalExperiment"; version="1.2.0"; sha256="19jpax2l69dayhm9pddbg4q7bq9c4xaxdfif93pw6kq63l8g2c1d"; depends=[BiocGenerics IRanges MultiAssayExperiment S4Vectors]; }; + MungeSumstats = derive2 { name="MungeSumstats"; version="1.10.1"; sha256="0q7ifxxi1bgis1l24dna6xwra48c4lajajs48vlwj3iaa5nsicfk"; depends=[Biostrings BSgenome data_table dplyr GenomeInfoDb GenomicRanges googleAuthR httr IRanges jsonlite magrittr R_utils RCurl rtracklayer stringr VariantAnnotation]; }; + MutationalPatterns = derive2 { name="MutationalPatterns"; version="3.12.0"; sha256="19ya4ax6pa727hdn0118l9pwa9dxgh89dz54mm66dawxga3jhar4"; depends=[BiocGenerics Biostrings BSgenome cowplot dplyr GenomeInfoDb GenomicRanges ggalluvial ggdendro ggplot2 IRanges magrittr NMF pracma purrr RColorBrewer S4Vectors stringr tibble tidyr VariantAnnotation]; }; + NADfinder = derive2 { name="NADfinder"; version="1.26.0"; sha256="1ig27q6cww3b0gjxd3abj026znry32q4jfmgv2wh1icb2rp1xxxq"; depends=[ATACseqQC baseline BiocGenerics corrplot csaw EmpiricalBrownsMethod GenomeInfoDb GenomicAlignments GenomicRanges IRanges limma metap Rsamtools rtracklayer S4Vectors signal SummarizedExperiment trackViewer]; }; + NBAMSeq = derive2 { name="NBAMSeq"; version="1.18.0"; sha256="0msk3hpm4169q1ldfmi1kfh1b5q1wah8x2shlcsmgr2987vl4war"; depends=[BiocParallel DESeq2 genefilter mgcv S4Vectors SummarizedExperiment]; }; + NCIgraph = derive2 { name="NCIgraph"; version="1.50.0"; sha256="12k9r30a36vn7vpzl0vrhsgyjjm64n5x0c7jfmq2f6c0qkxfn6v6"; depends=[graph KEGGgraph R_oo RBGL RCy3]; }; + NOISeq = derive2 { name="NOISeq"; version="2.46.0"; sha256="0qs0sc47n3p9wmf5cmc39cb30i8pbsyizhr29b3ld197pi1ba5wb"; depends=[Biobase Matrix]; }; + NPARC = derive2 { name="NPARC"; version="1.14.0"; sha256="014zrhmkhfhiblahq124qm8ws2m595ycji9jcpxg9l895nagpx9h"; depends=[BiocParallel broom dplyr magrittr MASS rlang tidyr]; }; + NTW = derive2 { name="NTW"; version="1.52.0"; sha256="17327zp220xzfg5f48kkfkmmwdk75gggp56nirj7lywwwp2mx76s"; depends=[mvtnorm]; }; + NanoMethViz = derive2 { name="NanoMethViz"; version="2.8.1"; sha256="0rwwb8y99h5rq1fxyqs7j3kc2vfmjxkbiv2wp7ndp373xjij0rcz"; depends=[AnnotationDbi assertthat BiocSingular Biostrings bsseq cli cpp11 data_table dbscan dplyr e1071 forcats fs GenomicRanges ggplot2 ggrastr glue IRanges limma patchwork purrr R_utils Rcpp readr rlang Rsamtools S4Vectors scales scico stringr SummarizedExperiment tibble tidyr withr zlibbioc]; }; + NanoStringDiff = derive2 { name="NanoStringDiff"; version="1.32.0"; sha256="08xq7yiga7225ld9xz7wwshb541kr5fclci94w4vzg13hwvs6x6v"; depends=[Biobase matrixStats Rcpp]; }; + NanoStringNCTools = derive2 { name="NanoStringNCTools"; version="1.10.0"; sha256="0zrv51vbsdf2m74bd0syd0qka9f4fm0i3479z2w4p1k5ima7az5j"; depends=[Biobase BiocGenerics Biostrings ggbeeswarm ggiraph ggplot2 ggthemes IRanges pheatmap RColorBrewer S4Vectors]; }; + NanoTube = derive2 { name="NanoTube"; version="1.8.0"; sha256="1wdhg25hmgypr5y18x88sgjdf296k5ci0k9fvbjhsi75dsyy00bv"; depends=[Biobase fgsea ggplot2 limma reshape]; }; + Nebulosa = derive2 { name="Nebulosa"; version="1.12.0"; sha256="0kzkdwxrhl7plbcbqr58gnadhhbhx2811ian0s4kds14y4mxl26c"; depends=[ggplot2 ks Matrix patchwork Seurat SingleCellExperiment SummarizedExperiment]; }; + NetActivity = derive2 { name="NetActivity"; version="1.4.0"; sha256="0jij69065vkmr7ba898h44vyacpkmbqc1pr3c6frvwjqwazvdr4k"; depends=[airway DelayedArray DelayedMatrixStats DESeq2 NetActivityData SummarizedExperiment]; }; + NetPathMiner = derive2 { name="NetPathMiner"; version="1.38.0"; sha256="1nppjwxvd8qgajhcs2yzch3k1r1mvvqb9sy94cpr74iga8m487nh"; depends=[igraph]; }; + NetSAM = derive2 { name="NetSAM"; version="1.42.0"; sha256="1y9k37pq10dp5bp847hlsr2sl71ygvzsd4naqg65lpklg9zrc8la"; depends=[AnnotationDbi biomaRt DBI doParallel foreach GO_db igraph R2HTML seriation survival WGCNA]; }; + NewWave = derive2 { name="NewWave"; version="1.12.0"; sha256="1d3kvrkjl9dhwxsvr69zryp4mz6dggzgzrbiab5wkm3n9qvvgf84"; depends=[BiocSingular DelayedArray irlba Matrix SharedObject SingleCellExperiment SummarizedExperiment]; }; + NoRCE = derive2 { name="NoRCE"; version="1.14.0"; sha256="1b21mmmn26q17si2m1h8635a3ksnn38ajlm4mv41vaii7v8h11zv"; depends=[AnnotationDbi biomaRt DBI dbplyr dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 GO_db igraph IRanges KEGGREST png RCurl reactome_db readr reshape2 RSQLite rtracklayer rWikiPathways S4Vectors stringr SummarizedExperiment tidyr zlibbioc]; }; + NormalyzerDE = derive2 { name="NormalyzerDE"; version="1.20.0"; sha256="1cgm9iivnn1xx1m0shac4i8cm9ar2f965wyrs6ifj41n0scqyns2"; depends=[ape Biobase car ggforce ggplot2 limma MASS matrixStats preprocessCore SummarizedExperiment vsn]; }; + NormqPCR = derive2 { name="NormqPCR"; version="1.48.0"; sha256="19iw77aqv4j54m3f955xm4bg4jbxy0aavqys0dias26f4x8a29n7"; depends=[Biobase qpcR RColorBrewer ReadqPCR]; }; + NuPoP = derive2 { name="NuPoP"; version="2.10.0"; sha256="1kmnm3dyscbavdkfwwp0s7xqngz6gma7475f891jgsav12xh7zwf"; depends=[]; }; + OCplus = derive2 { name="OCplus"; version="1.76.0"; sha256="16pcqcbw8xha1xi4a03f9hpfcp1qx6qcssh1hz99sjjj5zila8rp"; depends=[interp multtest]; }; + OGRE = derive2 { name="OGRE"; version="1.6.0"; sha256="1m7nq27wfajaggbbrgdjxf8hmf4ppjm5sxyp5rhg090286xb093i"; depends=[AnnotationHub assertthat data_table DT GenomeInfoDb GenomicRanges ggplot2 Gviz IRanges rtracklayer S4Vectors shiny shinyBS shinydashboard shinyFiles tidyr]; }; + OLIN = derive2 { name="OLIN"; version="1.80.0"; sha256="1wsja358i36kxqnc632hpf87v7ikss8vxplbbg1m9cgy6hg9d0yr"; depends=[limma locfit marray]; }; + OLINgui = derive2 { name="OLINgui"; version="1.76.0"; sha256="07ivdgfa471n67mx93yr66x0gx4ldym8wcxavkqj7xlx2dcmm677"; depends=[marray OLIN tkWidgets widgetTools]; }; + OMICsPCA = derive2 { name="OMICsPCA"; version="1.20.0"; sha256="0dmqv5k00nxwryc5093y2z25zcnwz5rvndsfirpzh0276x2fbhis"; depends=[cluster clValid corrplot cowplot data_table factoextra FactoMineR fpc GenomeInfoDb ggplot2 HelloRanges IRanges kableExtra magick MASS MultiAssayExperiment NbClust OMICsPCAdata pdftools PerformanceAnalytics reshape2 rgl rmarkdown rtracklayer tidyr]; }; + OPWeight = derive2 { name="OPWeight"; version="1.24.0"; sha256="1gchiws3h190xh13v3iry96mc27fan7lf82laxc78p9h1kcn1bcs"; depends=[MASS qvalue tibble]; }; + ORFhunteR = derive2 { name="ORFhunteR"; version="1.10.0"; sha256="0qg69zp85ggnzhjh8y3zfbdpqi5awsqaga9q970g8793xwkpa6dr"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg38 data_table Peptides randomForest Rcpp rtracklayer stringr xfun]; }; + ORFik = derive2 { name="ORFik"; version="1.22.1"; sha256="1cj8gb1myapbsy769ghvxap1i1n17bzkynzmqm13r8ccssp27d8f"; depends=[AnnotationDbi BiocGenerics BiocParallel biomaRt biomartr Biostrings BSgenome cowplot curl data_table DESeq2 downloader fst GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gridExtra httr IRanges jsonlite R_utils Rcpp RCurl Rsamtools rtracklayer S4Vectors SummarizedExperiment withr XML xml2]; }; + OSAT = derive2 { name="OSAT"; version="1.50.0"; sha256="0kga066z3yn2c94kgfvl2a4dklgys064jbml7ccxbf3dzqgivxm1"; depends=[]; }; + OTUbase = derive2 { name="OTUbase"; version="1.52.0"; sha256="0j38wvsfmkvnrmfi2i8vawq8w46i5yrcqn7hikqbv83x47bzspzg"; depends=[Biobase Biostrings IRanges S4Vectors ShortRead vegan]; }; + OUTRIDER = derive2 { name="OUTRIDER"; version="1.20.0"; sha256="1yrsykqascy0533wwd0c8b6h1gn0bpzxik1jv0vp2055pzb2z4yc"; depends=[BBmisc BiocGenerics BiocParallel data_table DESeq2 generics GenomicFeatures GenomicRanges ggplot2 heatmaply IRanges matrixStats pcaMethods pheatmap plotly plyr PRROC RColorBrewer Rcpp RcppArmadillo reshape2 S4Vectors scales SummarizedExperiment]; }; + OVESEG = derive2 { name="OVESEG"; version="1.18.0"; sha256="10pax0snvz5rk3siidaydgcb0cl0phx5wxdshzn3lbkfpw0psvj0"; depends=[BiocParallel fdrtool limma Rcpp SummarizedExperiment]; }; + OmaDB = derive2 { name="OmaDB"; version="2.18.0"; sha256="1ngy8m94nq3nxxsj5vmvj86z3yrkfl1am14szn4w39q7spdlzcg7"; depends=[ape Biostrings GenomicRanges httr IRanges jsonlite plyr topGO]; }; + OmicCircos = derive2 { name="OmicCircos"; version="1.40.0"; sha256="1nsznyfkrbmgcr1fbpirzsy4sriw9knnxczdggfxbmkf0hd5a89c"; depends=[GenomicRanges]; }; + Omixer = derive2 { name="Omixer"; version="1.12.0"; sha256="02k6qvx4qxlcwp6qxx87a4rgmrqjp13w9xghc09zw4bzikwxnl0s"; depends=[dplyr forcats ggplot2 gridExtra magrittr readr stringr tibble tidyselect]; }; + OmnipathR = derive2 { name="OmnipathR"; version="3.10.1"; sha256="1wbzb4kh7bzsvixr3vxzih9rfkpjx00f33i0yl0dqj0yixnrghwr"; depends=[checkmate crayon curl digest dplyr httr igraph jsonlite later logger lubridate magrittr progress purrr rappdirs readr readxl rlang rmarkdown rvest stringi stringr tibble tidyr tidyselect withr xml2 yaml]; }; + OncoScore = derive2 { name="OncoScore"; version="1.30.0"; sha256="1v6x896ksp1qhgw3rbqciv9a0ivjvfhi6pdslyq6b9g1k5wranrk"; depends=[biomaRt]; }; + OncoSimulR = derive2 { name="OncoSimulR"; version="4.4.0"; sha256="16rvb5jp7fif00i2yvlc0ksr6x5q5y3qy6zlv03c9b90inlnfgvk"; depends=[car data_table dplyr ggplot2 ggrepel graph gtools igraph RColorBrewer Rcpp Rgraphviz smatr stringr]; }; + OpenStats = derive2 { name="OpenStats"; version="1.14.0"; sha256="1x5b3c8z2l6y6q6p2d9zmbci3xqxgiam4yd877ggxlirycnv20gv"; depends=[AICcmodavg car Hmisc jsonlite knitr MASS nlme rlist summarytools]; }; + OrderedList = derive2 { name="OrderedList"; version="1.74.0"; sha256="0pp27bp0vbwicd9qlwx4mym6rxfvrki113wk2gwrcc8j6pmwchpa"; depends=[Biobase twilight]; }; + Organism_dplyr = derive2 { name="Organism.dplyr"; version="1.30.1"; sha256="1s55fiqgxrdznn43qhm5yv9gp8d1msr2f39wxih0b5bm4wxhkq45"; depends=[AnnotationDbi AnnotationFilter BiocFileCache DBI dbplyr dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges rlang RSQLite S4Vectors tibble]; }; + OrganismDbi = derive2 { name="OrganismDbi"; version="1.44.0"; sha256="0g75y21lqmwsh28nx99zp2gxr6rhlhbw76f66qx5hrh6bm2zpm7j"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager DBI GenomicFeatures GenomicRanges graph IRanges RBGL S4Vectors]; }; + Oscope = derive2 { name="Oscope"; version="1.32.0"; sha256="1li2l9mdq2q0580a7qzvfid5n15v62fr9ys87j42k3l2w5a26smf"; depends=[BiocParallel cluster EBSeq testthat]; }; + OutSplice = derive2 { name="OutSplice"; version="1.2.0"; sha256="1ssah22igm7mmpjs3qdcnc7d6ysvb5vl3van18vdqmv1njdf7804"; depends=[AnnotationDbi GenomicFeatures GenomicRanges IRanges org_Hs_eg_db Repitools S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + PAA = derive2 { name="PAA"; version="1.36.0"; sha256="0jfvkgpw60p8p1lmlkzrv4iv8fshpn74q1v8crsm098gz1x0n052"; depends=[e1071 gplots gtools limma MASS mRMRe randomForest Rcpp ROCR sva]; }; + PADOG = derive2 { name="PADOG"; version="1.44.0"; sha256="0yyca2k5fml0gc69i3fa67f7avkb7md0ylb0rvnhmf4srgb7ca67"; depends=[AnnotationDbi Biobase doRNG foreach GSA hgu133a_db hgu133plus2_db KEGGdzPathwaysGEO KEGGREST limma nlme]; }; + PAIRADISE = derive2 { name="PAIRADISE"; version="1.18.0"; sha256="1z17cxvsvi7lapbrqglsl126djlsqp4bwfagvhpi8hrpg85fqppr"; depends=[abind BiocParallel nloptr S4Vectors SummarizedExperiment]; }; + PANR = derive2 { name="PANR"; version="1.48.0"; sha256="0w7x8lldarjgl7a0pbkyphrhkv18ngcc1psx1j1v20c8bxdidbws"; depends=[igraph MASS pvclust RedeR]; }; + PAST = derive2 { name="PAST"; version="1.18.0"; sha256="11vbgj1961ml6jvynsap6rybirijjs125v9m15knvirb8l7fa265"; depends=[doParallel dplyr foreach GenomicRanges ggplot2 iterators qvalue rlang rtracklayer S4Vectors]; }; + PCAN = derive2 { name="PCAN"; version="1.30.0"; sha256="0hsxy2xny0ds712dniw8szlnnn9cpxn23hdzxashn5qh688xjwyk"; depends=[BiocParallel]; }; + PCAtools = derive2 { name="PCAtools"; version="2.14.0"; sha256="18rzv4kldjmm2zvz9pzrpspig2hy6mcvb45hgmw49ba4jdcxh31s"; depends=[beachmat BH BiocParallel BiocSingular cowplot DelayedArray DelayedMatrixStats dqrng ggplot2 ggrepel lattice Matrix Rcpp reshape2]; }; + PDATK = derive2 { name="PDATK"; version="1.10.0"; sha256="0jxah3jwwpkzp50gyc1200ndmwvn5s59pvv1c3xcnr8d8wyvsb5a"; depends=[BiocGenerics BiocParallel caret clusterRepro ConsensusClusterPlus CoreGx data_table dplyr genefu ggplot2 ggplotify igraph MatrixGenerics matrixStats MultiAssayExperiment piano plyr pROC RColorBrewer reportROC rlang S4Vectors scales SummarizedExperiment survcomp survival survminer switchBox verification]; }; + PECA = derive2 { name="PECA"; version="1.38.0"; sha256="05znla8cngj9k7yfx3k9wqcyrbp05f0dpddjvncgcnazp5jvq1g8"; depends=[affy aroma_affymetrix aroma_core genefilter limma preprocessCore ROTS]; }; + PICS = derive2 { name="PICS"; version="2.46.0"; sha256="0rpdi8s5l9hz5p1r688ngqq07cddqjcbl3ingl4a0jhl8k3rrznb"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools]; }; + PING = derive2 { name="PING"; version="2.46.0"; sha256="1i5vcjplck3phgwy72rcpi2xf4nwkd57lv81pl7wx2lr4yls7jw3"; depends=[BiocGenerics BSgenome fda GenomicRanges Gviz IRanges PICS S4Vectors]; }; + PLPE = derive2 { name="PLPE"; version="1.62.0"; sha256="0ygh6awl73h0ykzcng6l2gxphgjivgswbk76xmlq53458sz12kv1"; depends=[Biobase LPE MASS]; }; + POMA = derive2 { name="POMA"; version="1.12.0"; sha256="08drgm5n5b6qhxs6znc9adfl8rlfrsqbv9j0lsj7lbi2kism1xc3"; depends=[broom caret ComplexHeatmap dbscan DESeq2 dplyr ggplot2 ggrepel glasso glmnet impute limma magrittr mixOmics randomForest RankProd rmarkdown SummarizedExperiment tibble tidyr uwot vegan]; }; + POWSC = derive2 { name="POWSC"; version="1.10.0"; sha256="1qkbzc61kr5kpc4z2z8yfhwvxyvhm6x297zfjzn6a1c16g3hy3p0"; depends=[Biobase ggplot2 limma MAST pheatmap RColorBrewer SingleCellExperiment SummarizedExperiment]; }; + PPInfer = derive2 { name="PPInfer"; version="1.28.0"; sha256="141hc0gl52869labiryr8ar763hqrxqxjxbi6s1nlj96d601s8sm"; depends=[biomaRt fgsea ggplot2 httr igraph kernlab STRINGdb yeastExpData]; }; + PREDA = derive2 { name="PREDA"; version="1.48.0"; sha256="1n8nlkhfbhisq62b382ydj9k4yrpiq0niqhj56rj3vz9p56gkx1p"; depends=[annotate Biobase lokern multtest]; }; + PROMISE = derive2 { name="PROMISE"; version="1.54.0"; sha256="0hscmk80mk47ay9l0s1jw1z9zaxxxv5r1n0057pmlpwbxvsck94p"; depends=[Biobase GSEABase]; }; + PROPER = derive2 { name="PROPER"; version="1.34.0"; sha256="1fmj6g9rjxr4i0480gzwfnmz0pn66pbyz3cy1wxwwfhpna24bi62"; depends=[edgeR]; }; + PROPS = derive2 { name="PROPS"; version="1.24.0"; sha256="1kc2f3syvm16hckv8bgipbmjfvdfhkz1zlm8hhyc6hvqhvl81973"; depends=[Biobase bnlearn reshape2 sva]; }; + PROcess = derive2 { name="PROcess"; version="1.78.0"; sha256="0hwhkz5qnwwgzmjf44qqfnrbqg8gl20rk0dc1ymjyah79lyn1vpj"; depends=[Icens]; }; + PSEA = derive2 { name="PSEA"; version="1.36.0"; sha256="02gnxacnpzz74bk4y4nkd6pd8y8abi0988zf03x1mcgnn7hk1s2y"; depends=[Biobase MASS]; }; + PSMatch = derive2 { name="PSMatch"; version="1.6.0"; sha256="0l13zbi011a793wlp9rfhgrixp7szj0zbn24yjw764527x66qxyj"; depends=[BiocGenerics BiocParallel igraph Matrix MsCoreUtils ProtGenerics QFeatures S4Vectors]; }; + PWMEnrich = derive2 { name="PWMEnrich"; version="4.38.0"; sha256="1s0hvqsvsfvhhyli238z8zbwnwmsi97gm3n83wv326zhzacmdxhf"; depends=[BiocGenerics Biostrings evd gdata S4Vectors seqLogo]; }; + PanViz = derive2 { name="PanViz"; version="1.4.0"; sha256="19aj5d9dhhzyylr2rlxq52ss82h5rvkc816661j45qcrcbm62ld0"; depends=[colorspace data_table dplyr easycsv futile_logger igraph magrittr RColorBrewer rentrez rlang stringr tibble tidyr]; }; + PanomiR = derive2 { name="PanomiR"; version="1.6.0"; sha256="0xbmqm61gfqk25mq97bb5bsda329jpn89k7dnm4qqjb35plswg38"; depends=[clusterProfiler dplyr forcats GSEABase igraph limma metap org_Hs_eg_db preprocessCore RColorBrewer rlang tibble withr]; }; + Path2PPI = derive2 { name="Path2PPI"; version="1.32.0"; sha256="1pjm0p91ins34fnhwkay0jnjms5fjpfw990mz343vr8s6ab83m89"; depends=[igraph]; }; + PathNet = derive2 { name="PathNet"; version="1.42.0"; sha256="1ivyr2f19dqzis1l6r1d695i20ymwq4ldgszbkraxbj1vzk51fpw"; depends=[]; }; + PathoStat = derive2 { name="PathoStat"; version="1.28.0"; sha256="16c54dkfv81rmfx2yrd0mi9ppv1kbqgvv6fi8y52cjzdk7rgpaxk"; depends=[ape BiocStyle ComplexHeatmap corpcor DESeq2 devtools dplyr DT edgeR ggplot2 glmnet gmodels knitr limma matrixStats phyloseq plotly plyr RColorBrewer rentrez reshape2 ROCR scales shiny shinyjs tidyr vegan webshot XML]; }; + PeacoQC = derive2 { name="PeacoQC"; version="1.12.0"; sha256="1108ni9lypy2p5xpv0zd68vaxnjz7sdpdi4vhpa1df1jwn91g6qw"; depends=[circlize ComplexHeatmap flowCore flowWorkspace ggplot2 gridExtra plyr]; }; + PepsNMR = derive2 { name="PepsNMR"; version="1.20.0"; sha256="013jw9l7r87j4bmpjrvq5qn91kp44wj5vd68cl5axbqhjg7fq4ww"; depends=[ggplot2 gridExtra Matrix matrixStats ptw reshape2]; }; + PhIPData = derive2 { name="PhIPData"; version="1.10.0"; sha256="14m8qbv6aspgj8ba78g91cgrfv44v8cq1xn6993qzkwdp94hxhwg"; depends=[BiocFileCache BiocGenerics cli edgeR GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; + PharmacoGx = derive2 { name="PharmacoGx"; version="3.6.0"; sha256="1nhv8rncjmbg21pc14n8crjknwdjf53yfmj4sk970qp6pryqs75p"; depends=[Biobase BiocGenerics BiocParallel boot caTools checkmate coop CoreGx data_table downloader ggplot2 jsonlite MultiAssayExperiment RColorBrewer Rcpp reshape2 S4Vectors SummarizedExperiment]; }; + PhenStat = derive2 { name="PhenStat"; version="2.38.0"; sha256="16gh4qmp1r7hbfvnk38fzk0pg1xp9hnxixaa084c1pra5m9zrm7w"; depends=[car corrplot ggplot2 graph knitr lme4 logistf MASS msgps nlme nortest pingr reshape SmoothWin]; }; + PhenoGeneRanker = derive2 { name="PhenoGeneRanker"; version="1.10.0"; sha256="1912cbyr3qwyn4mbr1zarzh1rr9n4birfdx8fq8swhc9pjdrbydv"; depends=[doParallel dplyr foreach igraph Matrix]; }; + PhosR = derive2 { name="PhosR"; version="1.12.0"; sha256="1wjnc0i062kwdzz2hxavxifgfl47pk98s57z7av974vz9aa64v7b"; depends=[BiocGenerics circlize dendextend dplyr e1071 GGally ggdendro ggplot2 ggpubr ggtext igraph limma network pcaMethods pheatmap preprocessCore RColorBrewer reshape2 rlang ruv S4Vectors stringi SummarizedExperiment tidyr]; }; + PhyloProfile = derive2 { name="PhyloProfile"; version="1.16.0"; sha256="19qiz589sp30qrqlf5s5a1j70npqhkxp0i9bd3143w7pa9rqmpfj"; depends=[ape BiocStyle bioDist Biostrings colourpicker data_table DT energy ExperimentHub ggplot2 gridExtra OmaDB pbapply plyr RColorBrewer RCurl shiny shinyBS shinycssloaders shinyFiles shinyjs stringr xml2 yaml zoo]; }; + Pi = derive2 { name="Pi"; version="2.14.0"; sha256="16jh7p3f6nk2hwvp44b9sas1dl618m520xj553x9dkaj77jmzp6d"; depends=[BiocGenerics caret dnet dplyr GenomeInfoDb GenomicRanges ggnetwork ggplot2 ggrepel glmnet igraph IRanges lattice MASS Matrix osfr plot3D purrr randomForest RCircos readr ROCR scales supraHex tibble tidyr]; }; + Pigengene = derive2 { name="Pigengene"; version="1.28.0"; sha256="0sh9q6qx4ycgdhpdvh026hqcxyy6jnbz5inb5r2acj5n5sza0xbk"; depends=[BiocStyle bnlearn C50 clusterProfiler DBI DOSE dplyr gdata ggplot2 GO_db graph impute MASS matrixStats openxlsx partykit pheatmap preprocessCore ReactomePA Rgraphviz WGCNA]; }; + PloGO2 = derive2 { name="PloGO2"; version="1.14.0"; sha256="0r0zf8dfb4pv4hv5fp5v61i3q5bnzwxws1v3cnx7l64b0hjl2ffi"; depends=[GO_db GOstats httr lattice openxlsx xtable]; }; + PoDCall = derive2 { name="PoDCall"; version="1.10.0"; sha256="1c8g3p7fm25b9fvyw6dy3rz0g84by2l3vp289d22pyy08kxxgwrj"; depends=[diptest DT ggplot2 gridExtra LaplacesDemon mclust purrr readr rlist shiny shinyjs]; }; + PrInCE = derive2 { name="PrInCE"; version="1.18.0"; sha256="0qzsrmn3dww1yklf4d1pk9grbiij5fqpsnhxz2fqkb3r0xyrnqm6"; depends=[Biobase dplyr forecast Hmisc LiblineaR magrittr MSnbase naivebayes progress purrr ranger Rdpack robustbase speedglm tester tidyr]; }; + Prostar = derive2 { name="Prostar"; version="1.34.3"; sha256="1w644c89w0xf88b8r57c1md7zsa2v8bxzfrqc2w8znkv008b9mpv"; depends=[colourpicker DAPAR DAPARdata data_table DT future ggplot2 gplots gtools highcharter htmlwidgets knitr later promises R_utils rclipboard RColorBrewer rhandsontable sass shiny shinyAce shinyBS shinycssloaders shinyjqui shinyjs shinythemes shinyTree shinyWidgets tibble vioplot webshot XML]; }; + ProtGenerics = derive2 { name="ProtGenerics"; version="1.34.0"; sha256="1gjva76nxa9nzzmc9hya3bq7hswfmjd768v21f6m3gyygxvl581m"; depends=[]; }; + ProteoDisco = derive2 { name="ProteoDisco"; version="1.8.0"; sha256="02d477mk43ci9vl1g1rp8zjw6635772pkyjnda87ms4as9jrxcw6"; depends=[BiocGenerics BiocParallel Biostrings checkmate cleaver dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges ParallelLogger plyr rlang S4Vectors tibble tidyr VariantAnnotation XVector]; }; + ProteoMM = derive2 { name="ProteoMM"; version="1.20.0"; sha256="0fgypbamsk8sh63s1nfda40f962ff5mi2qh0b8gaq20z6pkywk04"; depends=[biomaRt gdata ggplot2 ggrepel gtools matrixStats]; }; + PureCN = derive2 { name="PureCN"; version="2.8.1"; sha256="0hi1f1j2xlvlngf6pz28b6l9rcb1kkvlx5hg2zrlb8wd1gijxb7j"; depends=[Biobase BiocGenerics Biostrings data_table DNAcopy futile_logger GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra IRanges Matrix mclust RColorBrewer rhdf5 Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation VGAM]; }; + Pviz = derive2 { name="Pviz"; version="1.36.0"; sha256="17aggsyc82mpya27771sal2k03hvqmi4yxf8cqnknmakf9ylm9la"; depends=[Biostrings biovizBase data_table GenomicRanges Gviz IRanges]; }; + QDNAseq = derive2 { name="QDNAseq"; version="1.38.0"; sha256="1n2qngqqw3hfv1yscksnpg8wslc85dlvaqw1hz2qvsxf1gcq2mks"; depends=[Biobase CGHbase CGHcall DNAcopy future_apply GenomicRanges IRanges matrixStats R_utils Rsamtools]; }; + QFeatures = derive2 { name="QFeatures"; version="1.12.0"; sha256="1g744fpb6g690bjbjs4v2899wwv6qc7n5cyq977pm8f3wln0m7mx"; depends=[AnnotationFilter Biobase BiocGenerics igraph IRanges lazyeval MsCoreUtils MultiAssayExperiment plotly ProtGenerics S4Vectors SummarizedExperiment]; }; + QSutils = derive2 { name="QSutils"; version="1.20.0"; sha256="1313mja7ikn7j1bn1rai4xm5wfiv11b2xp5xcnk9rpqcy0nb2r6r"; depends=[ape BiocGenerics Biostrings psych]; }; + QTLExperiment = derive2 { name="QTLExperiment"; version="1.0.0"; sha256="0x6ciqw7hk94yvnf3qdnlg9zbc7s71b4gx22il8s6zv33js6y8cx"; depends=[ashr BiocGenerics checkmate collapse dplyr rlang S4Vectors SummarizedExperiment tibble tidyr vroom]; }; + QUBIC = derive2 { name="QUBIC"; version="1.30.0"; sha256="12iyng6x692a9iqy5rzbm9zgjz4nnw2839z6f8l5cys1rch4xvpv"; depends=[biclust Matrix Rcpp RcppArmadillo]; }; + Qtlizer = derive2 { name="Qtlizer"; version="1.16.0"; sha256="0gcvapgig22nxc0hsc516cdpjpykz0v7xgxb6y6g6ibqi1vyd5gl"; depends=[curl GenomicRanges httr stringi]; }; + QuartPAC = derive2 { name="QuartPAC"; version="1.34.0"; sha256="08af130jngr2080khlxan245y9m4573qnc1mvcnk76q9wppq5y64"; depends=[data_table GraphPAC iPAC SpacePAC]; }; + QuasR = derive2 { name="QuasR"; version="1.42.1"; sha256="0695pjvp742qn629kxly4a9crbg6vakdx1ygnyshprjsz6xz2vnn"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicFiles GenomicRanges IRanges Rbowtie Rhtslib Rsamtools rtracklayer S4Vectors ShortRead]; }; + QuaternaryProd = derive2 { name="QuaternaryProd"; version="1.36.0"; sha256="01xpfpa0pwi9fc4lp0yqw21j8mrmbwwfanxp48qlmplv9x86b36h"; depends=[dplyr Rcpp yaml]; }; + R3CPET = derive2 { name="R3CPET"; version="1.34.0"; sha256="1pz7cwmwjmfsjkrl49jaxzy1y3v68b7153lz39gmi2qf2gs4lnk5"; depends=[BiocGenerics clValid data_table GenomeInfoDb GenomicRanges ggbio ggplot2 Hmisc igraph IRanges pheatmap Rcpp RCurl reshape2 S4Vectors]; }; + R453Plus1Toolbox = derive2 { name="R453Plus1Toolbox"; version="1.52.0"; sha256="0n72123n0gvhr36k6lcafa8mpr73i06jlz37599b0p6gdlj1r0gd"; depends=[Biobase BiocGenerics biomaRt Biostrings BSgenome GenomicRanges IRanges R2HTML Rsamtools S4Vectors ShortRead SummarizedExperiment TeachingDemos VariantAnnotation xtable XVector]; }; + R4RNA = derive2 { name="R4RNA"; version="1.30.0"; sha256="1qmr1s7z2f126wkwxjpr9fvak4i7mzgvfflkycgavbdqshn1rk6l"; depends=[Biostrings]; }; + RAIDS = derive2 { name="RAIDS"; version="1.0.0"; sha256="16apik3ykk1n1l4c15wh3f1r30w712vl8j7cpg7bnc29yy8yn202"; depends=[AnnotationDbi AnnotationFilter BSgenome class ensembldb gdsfmt GENESIS GenomicRanges IRanges MatrixGenerics pROC rlang S4Vectors SNPRelate VariantAnnotation]; }; + RAREsim = derive2 { name="RAREsim"; version="1.6.0"; sha256="0gr1vvqkdza317lrjr0m8316m2a7dirdhvl8xdqfl60vpwisiclg"; depends=[nloptr]; }; + RBGL = derive2 { name="RBGL"; version="1.78.0"; sha256="0hxhl1l6qdi355w5y7fdq8vlba2pknfizggkgr2fp8f1f3zqh494"; depends=[BH graph]; }; + RBM = derive2 { name="RBM"; version="1.34.0"; sha256="0ykwlcfymkv4pvjvkbih0926xrfzwvyijqi3gq6myk4aixhqxh4b"; depends=[limma marray]; }; + RBioFormats = derive2 { name="RBioFormats"; version="1.2.0"; sha256="0ny3mkc9cnyqqf3cxibzrncyzqd3ws5f7hd8kck0ag0fabqyp1pm"; depends=[EBImage rJava S4Vectors]; }; + RBioinf = derive2 { name="RBioinf"; version="1.62.0"; sha256="1ibnbzww5alix1sl2r1bbsgz7zgi5q6xcxnvfl6lf3kbicwvs82y"; depends=[graph]; }; + RCAS = derive2 { name="RCAS"; version="1.28.2"; sha256="19ildsck3g8v4w0g2f473sb8hyhn4avprdi78fim0prva5f9nqnv"; depends=[BiocGenerics Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 cowplot data_table DT genomation GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gprofiler2 IRanges knitr pbapply pheatmap plotly plotrix proxy ranger rmarkdown RSQLite rtracklayer S4Vectors]; }; + RCASPAR = derive2 { name="RCASPAR"; version="1.48.0"; sha256="00p11iac87ldd1hhkvl4sfpxznycp381w5m88xc20r3na7jgz9h7"; depends=[]; }; + RCM = derive2 { name="RCM"; version="1.18.0"; sha256="1yg6iqpfv56ysk8xz1ddi222qmmly02h6s09bbk4w4qygg5glyrv"; depends=[alabama DBI edgeR ggplot2 MASS nleqslv phyloseq RColorBrewer reshape2 tensor tseries VGAM]; }; + RCX = derive2 { name="RCX"; version="1.6.0"; sha256="0dq0hrlb4c049ggan3rsh15q3864aak4ndgg84i0sh12kpa4hdmy"; depends=[igraph jsonlite plyr]; }; + RCy3 = derive2 { name="RCy3"; version="2.22.1"; sha256="0qkjprf2p641j3a60av1l87pd6p17za5w6bp9qyah97jmm19za7m"; depends=[base64enc base64url BiocGenerics fs glue gplots graph httr IRdisplay IRkernel RColorBrewer RCurl RJSONIO stringi uuid XML]; }; + RCyjs = derive2 { name="RCyjs"; version="2.24.0"; sha256="0d5v1ngz0mgs2r35jm46wn24rpy7cd21d0ycvahp5zdl4kvrrb7i"; depends=[base64enc BiocGenerics BrowserViz graph httpuv]; }; + RDRToolbox = derive2 { name="RDRToolbox"; version="1.52.0"; sha256="1k1a0h18i5c3brvs9ibj16llxflrs0y72yjnnc5z9x4xc267m4y9"; depends=[MASS rgl]; }; + REBET = derive2 { name="REBET"; version="1.20.0"; sha256="038b5i9rlp96klwmym5s089ghd47r6rn7k5vjznlvsyqz93x5pxv"; depends=[ASSET]; }; + REDseq = derive2 { name="REDseq"; version="1.48.0"; sha256="1nb4c9mpp8wwnfvxqda07qfjdhzwapdqbn2ksi4v3fll4vp1gvp9"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome BSgenome_Celegans_UCSC_ce2 ChIPpeakAnno IRanges multtest]; }; + REMP = derive2 { name="REMP"; version="1.26.0"; sha256="196yxbdi0pkckpj7plz43r6zaasy9ndqbwc9mfwd6k4aps1c0r4i"; depends=[AnnotationHub BiocGenerics BiocParallel Biostrings BSgenome caret doParallel foreach GenomeInfoDb GenomicRanges impute IRanges iterators kernlab minfi org_Hs_eg_db ranger readr rtracklayer S4Vectors settings SummarizedExperiment]; }; + RESOLVE = derive2 { name="RESOLVE"; version="1.4.0"; sha256="1mzkdaqpzfmcxmz5hc6r2qd0hrp4j2vbv90is7nd5x8s2z8adq9z"; depends=[Biostrings BSgenome BSgenome_Hsapiens_1000genomes_hs37d5 data_table GenomeInfoDb GenomicRanges ggplot2 glmnet gridExtra IRanges lsa MutationalPatterns nnls reshape2 S4Vectors]; }; + RGMQL = derive2 { name="RGMQL"; version="1.22.0"; sha256="1l1wy36d73jknpg3cz2arxa77by3cgasl7b47sz9b4ya8rpm43kg"; depends=[BiocGenerics data_table dplyr GenomicRanges glue httr plyr RGMQLlib rJava rtracklayer S4Vectors xml2]; }; + RGSEA = derive2 { name="RGSEA"; version="1.36.0"; sha256="1llzp1d4g4d2ifjbhc4akdihnbj80zck23r9qwzaa5i5wky1b09b"; depends=[BiocGenerics]; }; + RGraph2js = derive2 { name="RGraph2js"; version="1.30.0"; sha256="0c0dfrfphsbx3pqa7knm35m9v4sqm12bgh8608p7y1fmhrfiz3cc"; depends=[digest graph rjson whisker]; }; + RITAN = derive2 { name="RITAN"; version="1.26.0"; sha256="05bfl9794h2mrm3d1a1d7bspl6dx2hhgjkip6x0fw1z1kv1mkpr2"; depends=[AnnotationFilter BgeeDB dynamicTreeCut EnsDb_Hsapiens_v86 ensembldb GenomicFeatures ggplot2 gplots gridExtra gsubfn hash igraph knitr linkcomm MCL plotrix png RColorBrewer reshape2 RITANdata sqldf STRINGdb]; }; + RIVER = derive2 { name="RIVER"; version="1.26.0"; sha256="1kczfywccgfa4xkqspr1995g5s4aajbbbjfvzvcssnwdxb8vv9g8"; depends=[Biobase ggplot2 glmnet pROC]; }; + RImmPort = derive2 { name="RImmPort"; version="1.30.0"; sha256="0wxx5x1za1rcvx5344ns4938bc89ccd22zbdszh7nxpy07h8142h"; depends=[data_table DBI dplyr plyr reshape2 RSQLite sqldf]; }; + RJMCMCNucleosomes = derive2 { name="RJMCMCNucleosomes"; version="1.26.0"; sha256="009sqq0wq84f5gdpcwbzjajlnhfi03q5qidvyhv2mx3i20c1k81a"; depends=[BiocGenerics BiocParallel consensusSeekeR GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; + RLMM = derive2 { name="RLMM"; version="1.64.0"; sha256="0mwk6nxclqhgg13lnyjdlk8c07kkp4b4fnifb0az0q5jw8hzwxg0"; depends=[MASS]; }; + RLSeq = derive2 { name="RLSeq"; version="1.5.2"; sha256="0nhip321gbv6phwdwi3qkbmhnfh7fhb9md6xs4lklskwkkrd7s1q"; depends=[AnnotationHub aws_s3 callr caretEnsemble circlize ComplexHeatmap dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggplotify ggprism pheatmap RColorBrewer regioneR rtracklayer valr VennDiagram]; }; + RLassoCox = derive2 { name="RLassoCox"; version="1.10.0"; sha256="0gj923b103bavhg0r1lmlxc23884gpliywq2d5bjv3bfikvbyd4h"; depends=[glmnet igraph Matrix survival]; }; + RMassBank = derive2 { name="RMassBank"; version="3.12.0"; sha256="0zf9945vzpla0qrq602v80wwz9m6rqs5fif55w5s8diphd7rqv57"; depends=[assertthat Biobase ChemmineOB ChemmineR data_table digest enviPat glue httr logger MSnbase mzR R_utils rcdk Rcpp readJDX rjson S4Vectors webchem XML yaml]; }; + RNAAgeCalc = derive2 { name="RNAAgeCalc"; version="1.14.0"; sha256="1cr84fxyc0sgc1d3wh8damq41jhmfb6khx9wj0khfqhwyffj1jkj"; depends=[AnnotationDbi ggplot2 impute org_Hs_eg_db recount SummarizedExperiment]; }; + RNASeqPower = derive2 { name="RNASeqPower"; version="1.42.0"; sha256="09hixgpg32fggw1v7x4msgyvpb3ygrnk3cqnx9hm32556vgg9a94"; depends=[]; }; + RNAinteract = derive2 { name="RNAinteract"; version="1.50.0"; sha256="0xndds71xbx6slvsr9i1jpm8zlm5ljasimgp1dlvgyvc9bdsmnbl"; depends=[abind Biobase cellHTS2 geneplotter gplots hwriter ICS ICSNP lattice latticeExtra limma locfit RColorBrewer splots]; }; + RNAmodR = derive2 { name="RNAmodR"; version="1.16.0"; sha256="0mdk2cg63dxlpcx2q93h0p9j78mz39q0hx7n53272wxgmw6a4bpp"; depends=[BiocGenerics BiocParallel Biostrings BSgenome colorRamps GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 Gviz IRanges matrixStats Modstrings RColorBrewer reshape2 ROCR Rsamtools rtracklayer S4Vectors]; }; + RNAmodR_AlkAnilineSeq = derive2 { name="RNAmodR.AlkAnilineSeq"; version="1.16.0"; sha256="1q6g08m7lwbjlr6f2ws3j83hf43w8bknigz6qf6454l6fqlsdddm"; depends=[BiocGenerics GenomicRanges Gviz IRanges RNAmodR S4Vectors]; }; + RNAmodR_ML = derive2 { name="RNAmodR.ML"; version="1.16.0"; sha256="0vd18yz8lpmxv26gzf7ldkciwf5c2m0dslbbi1i0c255h5sgw0dr"; depends=[BiocGenerics GenomicRanges IRanges ranger RNAmodR S4Vectors]; }; + RNAmodR_RiboMethSeq = derive2 { name="RNAmodR.RiboMethSeq"; version="1.16.0"; sha256="0r6bkp993x9i0j59xavxlwgf28kh5ww8cs391c4wnxqg57k0m9g3"; depends=[BiocGenerics GenomicRanges Gviz IRanges RNAmodR S4Vectors]; }; + RNAsense = derive2 { name="RNAsense"; version="1.16.0"; sha256="1axxanhr17w33b8qdrmc1c4qysq4c37g1aafihamls5894v9m3n8"; depends=[ggplot2 NBPSeq qvalue SummarizedExperiment]; }; + RNAseqCovarImpute = derive2 { name="RNAseqCovarImpute"; version="1.0.2"; sha256="0pnn219r5rl726nrh9axa82sv4867imk5j065xxx5samc6gbwqzi"; depends=[Biobase BiocParallel dplyr edgeR foreach limma magrittr mice rlang]; }; + ROC = derive2 { name="ROC"; version="1.78.0"; sha256="12msc6skvcx4ajk20l71k32rj8lsiafjxwcsrd51kyy5x2yj2v4m"; depends=[knitr]; }; + ROCpAI = derive2 { name="ROCpAI"; version="1.14.0"; sha256="0lwm4iijkiqg6zqyzc8fbczmln3sb30s09j2762xbhz3fjqa4daz"; depends=[boot fission knitr SummarizedExperiment]; }; + ROSeq = derive2 { name="ROSeq"; version="1.14.0"; sha256="14qj8c2pw4i9n0hqj0lxnb85pwlmgn0a8jws8zpafk5ij93hy76y"; depends=[edgeR limma pbmcapply]; }; + ROTS = derive2 { name="ROTS"; version="1.30.0"; sha256="1zd5w3mq0vjs3ivdb23x6d28sqq0dsfv13d64k1yijr4vdk3wvp6"; depends=[Biobase Rcpp]; }; + ROntoTools = derive2 { name="ROntoTools"; version="2.30.0"; sha256="1p7vhl29gjkrf3ivh82c46i1kyy5hryd72vv4ar0x4b2vhwk40xi"; depends=[boot graph KEGGgraph KEGGREST Rgraphviz]; }; + RPA = derive2 { name="RPA"; version="1.58.0"; sha256="0l2jrc17w4dbkknfn5rnkcym66ijb504w439isp1h6k0s600i2yl"; depends=[affy BiocGenerics BiocStyle phyloseq rmarkdown]; }; + RProtoBufLib = derive2 { name="RProtoBufLib"; version="2.14.0"; sha256="1i1a4ikfdyrrn0r53y1aipfm9dzzn6yzp5w651hvd6zav77cdh6q"; depends=[]; }; + RRHO = derive2 { name="RRHO"; version="1.42.0"; sha256="0933g6z7lj2gd8jn1s6i95szhlq18bk7gnygaxfbryj4746bc4l4"; depends=[VennDiagram]; }; + RSVSim = derive2 { name="RSVSim"; version="1.42.0"; sha256="0zrikys3d3h2sshy94fkisq6ry1ig3limir27nrykrrx1gvlvs6l"; depends=[Biostrings GenomicRanges IRanges ShortRead]; }; + RSeqAn = derive2 { name="RSeqAn"; version="1.22.0"; sha256="0ww8j6x037d8nffixb8yjrma62v1al2bmy9l5ipb4schy4263zr4"; depends=[Rcpp]; }; + RTCA = derive2 { name="RTCA"; version="1.54.0"; sha256="1ibg8vln7mrgbvx1zqgvdljyamzxpzj8a0yls3b3shnwj86h333z"; depends=[Biobase gtools RColorBrewer]; }; + RTCGA = derive2 { name="RTCGA"; version="1.32.0"; sha256="1lzdwkisvzj1wyx3wx4ll1c2j9ww3xz8kpbngmpf8cdrw4h3jrg1"; depends=[assertthat data_table dplyr ggplot2 ggthemes htmltools knitr purrr RCurl rmarkdown rvest scales stringi survival survminer viridis XML xml2]; }; + RTCGAToolbox = derive2 { name="RTCGAToolbox"; version="2.32.1"; sha256="1a38b30nsg2bnlnijf4aa4rn4db2y4v86awfbf6a6qzqwlzknrcq"; depends=[BiocGenerics data_table DelayedArray GenomeInfoDb GenomicRanges httr RaggedExperiment RCurl RJSONIO rvest S4Vectors stringr SummarizedExperiment TCGAutils]; }; + RTN = derive2 { name="RTN"; version="2.26.0"; sha256="1mlhbhvrbm4ac77vilw33i0xsc98wzx9dik8dg2yk4jakljqc0y5"; depends=[car data_table igraph IRanges limma minet mixtools pheatmap pwr RedeR S4Vectors snow SummarizedExperiment viper]; }; + RTNduals = derive2 { name="RTNduals"; version="1.26.0"; sha256="0ai85037l94m41lbr53p8lck5sn2ijsxwnjh2ana4ydnhgl18j8i"; depends=[RTN]; }; + RTNsurvival = derive2 { name="RTNsurvival"; version="1.26.0"; sha256="1v0hw8kk34f5kk5aysd2qsxmaxalipbq505my65ycif6ymy846kd"; depends=[data_table dunn_test egg ggplot2 pheatmap RColorBrewer RTN RTNduals scales survival]; }; + RTopper = derive2 { name="RTopper"; version="1.48.0"; sha256="0jjrxckza2qd66995hjd0k626s8hf6p8g0hp5vjimbb9ciy3bax6"; depends=[Biobase limma multtest]; }; + RUVSeq = derive2 { name="RUVSeq"; version="1.36.0"; sha256="04byggwsvmqrl77268smbas0wax460cdshmp4v5iqc5fghl7n0p2"; depends=[Biobase EDASeq edgeR MASS]; }; + RUVcorr = derive2 { name="RUVcorr"; version="1.34.0"; sha256="1mzysavs3bflj24qb03lg3kp54ka0kqmcb0r5fk6wz74bx19wl7q"; depends=[BiocParallel bladderbatch corrplot gridExtra lattice MASS psych reshape2 snowfall]; }; + RUVnormalize = derive2 { name="RUVnormalize"; version="1.36.0"; sha256="0amazkib807ny32s9gp7bj5yfqwg38j3ycr6f675a4dcm9ik64l9"; depends=[Biobase RUVnormalizeData]; }; + RVS = derive2 { name="RVS"; version="1.24.0"; sha256="0pgx000vigsjmxy37qbwnf7xwsc5l04r1rw8vk684f01f0rk4f55"; depends=[GENLIB gRain kinship2 snpStats]; }; + RadioGx = derive2 { name="RadioGx"; version="2.6.0"; sha256="0ykmvva5h1y7x9bxhqqfc18car9nasy06v1jjban7dlm95dl8nmk"; depends=[assertthat Biobase BiocGenerics BiocParallel caTools CoreGx data_table downloader matrixStats RColorBrewer reshape2 S4Vectors scales SummarizedExperiment]; }; + RaggedExperiment = derive2 { name="RaggedExperiment"; version="1.26.0"; sha256="07wx2icvxgrds1w7cx9pn99z6rzk2ih938j8g1laxmgx9sya74v6"; depends=[BiocBaseUtils BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix MatrixGenerics S4Vectors SummarizedExperiment]; }; + RandomWalkRestartMH = derive2 { name="RandomWalkRestartMH"; version="1.22.0"; sha256="0mvh22p0dliwapdgbl5r93dpjdfnvnxdv5ig3y9gd2ndn32h1cyc"; depends=[dnet igraph Matrix]; }; + RankProd = derive2 { name="RankProd"; version="3.28.0"; sha256="139q9aw4mbq1ld5z7hfs1nxcg5bw6igfcd4mx3acsndmanb47im4"; depends=[gmp Rmpfr]; }; + RareVariantVis = derive2 { name="RareVariantVis"; version="2.30.0"; sha256="0mz2c4dldl1z30s5hq4fazz7rpb4vyhknh9mfq89sr5d8z2akmjr"; depends=[BiocGenerics BSgenome BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores googleVis gtools IRanges phastCons100way_UCSC_hg19 S4Vectors SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; + Rarr = derive2 { name="Rarr"; version="1.2.0"; sha256="1ysc3p9i6igzf4bfdigrl5jpxmb52zqhvx6hh0ba22ld5p2r4xcr"; depends=[httr jsonlite paws_storage R_utils stringr]; }; + RbcBook1 = derive2 { name="RbcBook1"; version="1.70.0"; sha256="0xbz0qv232jq975fs3by1v5fmgm1phyadnd02bw1a45yk5n2sw0i"; depends=[Biobase graph rpart]; }; + Rbec = derive2 { name="Rbec"; version="1.10.0"; sha256="1hji3v0y5j6m1m13jz576hid5kh7v4msj3g17jn1f4cwr9mysr63"; depends=[dada2 doParallel foreach ggplot2 Rcpp readr]; }; + Rbowtie = derive2 { name="Rbowtie"; version="1.42.0"; sha256="1arwr8gisc5g9bwxlachf3lvxpd2767ahnwdf2p1lidwpfism8l8"; depends=[]; }; + Rbowtie2 = derive2 { name="Rbowtie2"; version="2.8.0"; sha256="0dx1psk6f27p1kiw4qwj1nf55gpqgisibzipvlnn5m9q3q8g70gv"; depends=[magrittr Rsamtools]; }; + Rbwa = derive2 { name="Rbwa"; version="1.6.0"; sha256="0wk77v53avp9lalg8j0sdxfsplxywsdsdpq1aapja2i4ffimnzkr"; depends=[]; }; + Rcollectl = derive2 { name="Rcollectl"; version="1.2.0"; sha256="1v551pb459da2845457ds49mmshpb9bljn1kp1k4k6p1ccf9pdqm"; depends=[ggplot2 lubridate processx]; }; + Rcpi = derive2 { name="Rcpi"; version="1.38.0"; sha256="1wnbw2vq8ydwjbfpwhv6wkfrmwh4h265bbh7m19qm59vxvv5n22s"; depends=[Biostrings doParallel foreach GOSemSim RCurl rjson rlang]; }; + Rcwl = derive2 { name="Rcwl"; version="1.18.0"; sha256="11vq3ymwi6aj2ci7z6nqy8b5hjfqgp42sgxx04nn1ipziq9n67va"; depends=[basilisk batchtools BiocParallel codetools DiagrammeR R_utils S4Vectors shiny yaml]; }; + RcwlPipelines = derive2 { name="RcwlPipelines"; version="1.18.0"; sha256="1fx6fvq15wxgj06wniw34qhx8q5463nhxrfkhv3898y5c7iifcid"; depends=[BiocFileCache git2r httr rappdirs Rcwl S4Vectors]; }; + Rdisop = derive2 { name="Rdisop"; version="1.62.0"; sha256="1jz063hsrrbrqqx8p5yknagw19hsw51arck591h95dckncxd0006"; depends=[Rcpp]; }; + ReQON = derive2 { name="ReQON"; version="1.48.0"; sha256="0w28b3ma8r8rshijdm5jj1z64v91my7hcvw18r9pdwjprh05bw0g"; depends=[rJava Rsamtools seqbias]; }; + ReUseData = derive2 { name="ReUseData"; version="1.2.2"; sha256="1yrdnjv005ffcq96hfl9a4j426fd8df9pqwmwkjv76xwcdp6l3h0"; depends=[basilisk BiocFileCache jsonlite Rcwl RcwlPipelines S4Vectors yaml]; }; + ReactomeContentService4R = derive2 { name="ReactomeContentService4R"; version="1.10.0"; sha256="0vcn24phqb2rgqvlqczwi042vxv82hl98wsa59r324gi00ipi7wh"; depends=[data_table doParallel foreach httr jsonlite magick]; }; + ReactomeGSA = derive2 { name="ReactomeGSA"; version="1.16.1"; sha256="0p73p60hh5kicxi2ad4yhs3ggw82ymhw5p1xhc4rk842qbcamags"; depends=[dplyr ggplot2 gplots httr jsonlite progress RColorBrewer tidyr]; }; + ReactomeGraph4R = derive2 { name="ReactomeGraph4R"; version="1.10.0"; sha256="0gjlsv72lx60w9kbq76vz2ll12r6h11xmzkiw5d48vj88a9g5svl"; depends=[data_table doParallel foreach getPass jsonlite magrittr neo4r purrr ReactomeContentService4R rlang]; }; + ReactomePA = derive2 { name="ReactomePA"; version="1.46.0"; sha256="0kflwlmyckyivr8xh7fsmpl7jfkq5kavwpkswmvdfqckbd0n9xsc"; depends=[AnnotationDbi DOSE enrichplot ggplot2 ggraph graphite gson igraph reactome_db]; }; + ReadqPCR = derive2 { name="ReadqPCR"; version="1.48.0"; sha256="19w6a5az79av860pdhr8zl5kn2la910pq83vk3f0m1pr8fsnnc93"; depends=[Biobase]; }; + RedeR = derive2 { name="RedeR"; version="2.6.0"; sha256="0s7masx9hbgirdm71v7b8hyvxwwy2jj3yzg0qqbpvp8xv38z42c0"; depends=[igraph]; }; + RedisParam = derive2 { name="RedisParam"; version="1.4.0"; sha256="0h902fs5lwjn3c85cl9hrq7ky67zlr3254m885dg9v8904zsgisy"; depends=[BiocParallel futile_logger redux withr]; }; + RegionalST = derive2 { name="RegionalST"; version="1.0.1"; sha256="18d4abfmv4yqvbnaqajakyxrmy2x639xx4hzp2i31gij0qm2p0wv"; depends=[assertthat BayesSpace colorspace dplyr fgsea ggplot2 gridExtra magrittr RColorBrewer S4Vectors scater Seurat shiny SingleCellExperiment SummarizedExperiment tibble TOAST]; }; + RepViz = derive2 { name="RepViz"; version="1.18.0"; sha256="1qdsvhxcgsjvafabxc0cc9jn7m8dp48ar4idvc2b0m1h03wmd2ww"; depends=[biomaRt GenomicRanges IRanges Rsamtools S4Vectors]; }; + Repitools = derive2 { name="Repitools"; version="1.48.0"; sha256="0pkj5pgrm76hmhfm1jjdszir8v3ilrdzf7n7ir22f3hs2g10zby0"; depends=[BiocGenerics Biostrings BSgenome cluster DNAcopy edgeR GenomeInfoDb GenomicAlignments GenomicRanges gplots gsmoothr IRanges MASS Ringo Rsamtools Rsolnp rtracklayer S4Vectors]; }; + ReportingTools = derive2 { name="ReportingTools"; version="2.42.3"; sha256="109vmrdsjdjnfrlcdyadzbwz9a50hqaahf7dawwxkbbh4mmdih78"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category DESeq2 edgeR ggbio ggplot2 GOstats GSEABase hwriter IRanges knitr lattice limma PFAM_db R_utils XML]; }; + ResidualMatrix = derive2 { name="ResidualMatrix"; version="1.12.0"; sha256="06py71xbygfwq55kawh2x340idrf5mmxmnsz5m6lph2ka086dc5v"; depends=[DelayedArray Matrix S4Vectors]; }; + Rfastp = derive2 { name="Rfastp"; version="1.12.0"; sha256="0pngcnm95dkxbhqdks96rka912wk0j3m64n4xzbp76x9zngcsq4q"; depends=[ggplot2 Rcpp reshape2 Rhtslib rjson zlibbioc]; }; + RgnTX = derive2 { name="RgnTX"; version="1.4.0"; sha256="0xh1j2dffg8qgjf8s042saavw6rz2mm2136krn7s8a5dndr77i1d"; depends=[GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges regioneR S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene]; }; + Rgraphviz = derive2 { name="Rgraphviz"; version="2.46.0"; sha256="03l6yr76inv4fivy10g0h2qafgywrcjnnhs694lwqz1y6r0gm1sy"; depends=[graph]; }; + Rhdf5lib = derive2 { name="Rhdf5lib"; version="1.24.1"; sha256="0lb5dkzfnfvxwrk8s9vzfjp8ab1sbr7b22jnzg41hgmpysi7dswh"; depends=[]; }; + Rhisat2 = derive2 { name="Rhisat2"; version="1.18.0"; sha256="1pxlpwqzbdii0b1swy9vcq905934yfmyqwfx2j3f7n5n4dgglc2q"; depends=[GenomicFeatures GenomicRanges SGSeq]; }; + Rhtslib = derive2 { name="Rhtslib"; version="2.4.0"; sha256="1h0hzs4f4mmnpi436dgib9lakljacznkyyssy7c4mdd419431aq2"; depends=[zlibbioc]; }; + RiboCrypt = derive2 { name="RiboCrypt"; version="1.8.0"; sha256="198jsia292c5zxq22nc0favc3awvk9dp2ar6mcc7rvkvxny14cvg"; depends=[BiocGenerics BiocParallel Biostrings bslib data_table dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 htmlwidgets httr IRanges jsonlite knitr markdown NGLVieweR ORFik plotly RCurl rlang shiny shinycssloaders shinyhelper shinyjqui stringr]; }; + RiboDiPA = derive2 { name="RiboDiPA"; version="1.10.0"; sha256="006yq094gym1dcixccs7n9fjv3xhdqqsbwx1dpqfas5x7vz27i0g"; depends=[BiocFileCache BiocGenerics data_table DESeq2 doParallel elitism foreach GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges matrixStats qvalue Rcpp reldist Rsamtools S4Vectors]; }; + RiboProfiling = derive2 { name="RiboProfiling"; version="1.32.0"; sha256="1bd37ypxsj9p94p2851hhc9ind59b5pkg1lyalha1nfw5gf8iay3"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr reshape2 Rsamtools rtracklayer S4Vectors sqldf]; }; + Ringo = derive2 { name="Ringo"; version="1.66.0"; sha256="1ch0akd4k1i4401jwxll5awlq7g12pw7x0kidarn5zva08jgiixd"; depends=[Biobase BiocGenerics genefilter lattice limma Matrix RColorBrewer vsn]; }; + Risa = derive2 { name="Risa"; version="1.44.0"; sha256="140q4x4sl7mffpglwy7hx0z5la2rkq0p1j22k36a4h1073wcpc2q"; depends=[affy Biobase biocViews Rcpp xcms]; }; + Rmagpie = derive2 { name="Rmagpie"; version="1.58.0"; sha256="0z55j3b2cpb5g14yvpc40y1099rrslhrcmnkj7x4hv7jgi0bvrd2"; depends=[Biobase e1071 kernlab pamr]; }; + Rmmquant = derive2 { name="Rmmquant"; version="1.20.0"; sha256="18r3jbi2ylgzl6v42blffcz60alfvkyqprhbq05xrg1hn1w95hc4"; depends=[apeglm BiocStyle DESeq2 devtools GenomicRanges org_Mm_eg_db Rcpp S4Vectors SummarizedExperiment TBX20BamSubset TxDb_Mmusculus_UCSC_mm9_knownGene]; }; + RnBeads = derive2 { name="RnBeads"; version="2.20.0"; sha256="15z7l4nmpy01xm19717l27nwf3rfsn6wjv211fn2y4ls40mz75qp"; depends=[BiocGenerics cluster ff fields GenomicRanges ggplot2 gplots gridExtra illuminaio IRanges limma MASS matrixStats methylumi plyr S4Vectors]; }; + RnaSeqSampleSize = derive2 { name="RnaSeqSampleSize"; version="2.12.0"; sha256="1c07wsq002zh44s85j429qfxwyy9f2fn599mdq46r1lq511c8z7q"; depends=[biomaRt dplyr edgeR ggplot2 ggpubr heatmap3 KEGGREST matlab Rcpp recount RnaSeqSampleSizeData SummarizedExperiment tidyr tidyselect]; }; + Rnits = derive2 { name="Rnits"; version="1.36.0"; sha256="095r211s7829gslb61sck92sh23w6ikiksaxakmdczs34l3s5jlp"; depends=[affy Biobase boot ggplot2 impute limma qvalue reshape2]; }; + RolDE = derive2 { name="RolDE"; version="1.6.0"; sha256="0g6wjg3pacwlncsb9ws584hxqv40kadwcak1g1z1lnj57kq99dh8"; depends=[doParallel doRNG foreach matrixStats nlme qvalue rngtools ROTS SummarizedExperiment]; }; + Rqc = derive2 { name="Rqc"; version="1.36.0"; sha256="0hrhfgv0b9ycw2vmzkpmrv9m9jvvq1n6asnxnrgvzlz81xak84ic"; depends=[BiocGenerics BiocParallel BiocStyle Biostrings biovizBase GenomicAlignments GenomicFiles ggplot2 IRanges knitr markdown plyr Rcpp reshape2 Rsamtools S4Vectors shiny ShortRead]; }; + Rsamtools = derive2 { name="Rsamtools"; version="2.18.0"; sha256="0bcapiwdzv7rqgs4hmw7hq290r3pz5vvhg4apxard0yybq83na1g"; depends=[BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicRanges IRanges Rhtslib S4Vectors XVector zlibbioc]; }; + Rsubread = derive2 { name="Rsubread"; version="2.16.0"; sha256="0bhq8q3dch09r3digf3snfvhyj6w7j1qqw8gl28b29in8azg6v4d"; depends=[Matrix]; }; + Rtpca = derive2 { name="Rtpca"; version="1.12.0"; sha256="14xs427ws2ak3bxf5rbxnnr74ckgswglwwxbqpwhyzbglbk683pc"; depends=[Biobase dplyr fdrtool ggplot2 pROC tibble tidyr]; }; + Rtreemix = derive2 { name="Rtreemix"; version="1.64.0"; sha256="0pfabbiam424gwxfv11xfx2c5yn70rw97jddlmwlaz9jlbv98zz5"; depends=[Biobase graph Hmisc]; }; + Rvisdiff = derive2 { name="Rvisdiff"; version="1.0.0"; sha256="1si4znpjqj2690fibhmdzwy3ln90xbx6ykvnq3xwn6v0mgnaz8kn"; depends=[edgeR]; }; + S4Arrays = derive2 { name="S4Arrays"; version="1.2.0"; sha256="0x420l98f6b10r3qrdjq5ijs2p0msdcg6d6aghr3yvj1f9g06h8y"; depends=[abind BiocGenerics crayon IRanges Matrix S4Vectors]; }; + S4Vectors = derive2 { name="S4Vectors"; version="0.40.2"; sha256="10lryil0psfyal0006rbhj0dbxyn8f7mpp11h758zc217cxsdnac"; depends=[BiocGenerics]; }; + SAIGEgds = derive2 { name="SAIGEgds"; version="2.2.0"; sha256="0wfhlw37dizd9kp204h2rsays52zgrapczghsidnxyclyrjl7r9z"; depends=[gdsfmt Matrix Rcpp RcppArmadillo RcppParallel SeqArray]; }; + SANTA = derive2 { name="SANTA"; version="2.38.0"; sha256="0gm9i0pj3c9sir8pmh12b62ah6x1gvy1lrp9hc6hg9rkh4gpyr0y"; depends=[igraph Matrix]; }; + SARC = derive2 { name="SARC"; version="1.0.0"; sha256="043sxjf0ppy7q5r49pd57dychygzhff4g4m5bnbkz88wp7njq0sz"; depends=[data_table DescTools GenomicFeatures GenomicRanges ggplot2 gridExtra gtable IRanges metap multtest plotly plyranges RaggedExperiment RColorBrewer reshape2 scales tidyverse]; }; + SBGNview = derive2 { name="SBGNview"; version="1.16.0"; sha256="01adszv87yjg6gn8pp8b76i1xqvxrnnkfb7h4va450dcz1f3hzvs"; depends=[AnnotationDbi bookdown httr igraph KEGGREST knitr pathview Rdpack rmarkdown rsvg SBGNview_data SummarizedExperiment xml2]; }; + SBMLR = derive2 { name="SBMLR"; version="1.98.0"; sha256="1clhrzrgwfrljg3ssz20nw4jk9nyjswiqclad6hwxj5aidndig1a"; depends=[deSolve XML]; }; + SC3 = derive2 { name="SC3"; version="1.30.0"; sha256="055h6j3yxahgfa97c7p3jk6qvy66p20xv53xi06j9cszrqwjh06g"; depends=[BiocGenerics cluster doParallel doRNG e1071 foreach ggplot2 pheatmap Rcpp RcppArmadillo robustbase ROCR rrcov S4Vectors shiny SingleCellExperiment SummarizedExperiment WriteXLS]; }; + SCAN_UPC = derive2 { name="SCAN.UPC"; version="2.44.0"; sha256="0dcwrifpxkhsx4f72cgjwkwlakzzzsvnsm5kjnmh2n8py5d0b7iy"; depends=[affy affyio Biobase Biostrings foreach GEOquery IRanges MASS oligo sva]; }; + SCANVIS = derive2 { name="SCANVIS"; version="1.16.0"; sha256="1y1lrkalcsl31rsyzdvjzj2zfpjki56jvphi758z8w49d920jn5y"; depends=[IRanges plotrix RCurl rtracklayer]; }; + SCArray = derive2 { name="SCArray"; version="1.10.0"; sha256="194zcw12jnsssizkw7hjgv1ja3gpnfc4kbhnh56j9apc6yr3q9ab"; depends=[BiocParallel BiocSingular DelayedArray DelayedMatrixStats gdsfmt Matrix S4Vectors SingleCellExperiment SummarizedExperiment]; }; + SCArray_sat = derive2 { name="SCArray.sat"; version="1.2.0"; sha256="1hqqq6fsy6rxldmaf006v9xn6nvapxi5jhxdk7n7jppfx948bla4"; depends=[BiocGenerics BiocParallel BiocSingular DelayedArray gdsfmt S4Vectors SCArray Seurat SeuratObject SummarizedExperiment]; }; + SCBN = derive2 { name="SCBN"; version="1.20.0"; sha256="1sxm0qmnz1cxxwdgskwrjf2iqz8fj7x1df2c88h53n05q8amxx48"; depends=[]; }; + SCFA = derive2 { name="SCFA"; version="1.12.0"; sha256="17bpmypgcx9wcrnalwc7sm0dzxg7w454riksxm34kjw2jdh1ql78"; depends=[BiocParallel cluster coro glmnet igraph Matrix matrixStats psych RhpcBLASctl survival torch]; }; + SCOPE = derive2 { name="SCOPE"; version="1.14.0"; sha256="1snr6f62cvz9jxrgqrhinc9nnp5fanmps99sn1ki8bwwglak0c2v"; depends=[BiocGenerics Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 DescTools DNAcopy doParallel foreach GenomeInfoDb GenomicRanges gplots IRanges RColorBrewer Rsamtools S4Vectors]; }; + SCnorm = derive2 { name="SCnorm"; version="1.24.0"; sha256="1d1p0gd9n7r51vac8gaq9igpg508hi46fafp2nk3ffm35qw9v211"; depends=[BiocGenerics BiocParallel cluster data_table forcats ggplot2 moments quantreg S4Vectors SingleCellExperiment SummarizedExperiment]; }; + SDAMS = derive2 { name="SDAMS"; version="1.22.0"; sha256="0lmjirlly0rpy47vr4qkxdpabzfbffvsj7wfxln0dy4j5i70mj6y"; depends=[qvalue SummarizedExperiment trust]; }; + SELEX = derive2 { name="SELEX"; version="1.34.0"; sha256="0m4ah03s1ywxpc3rdxx5bd1a9zx54wxn5lacxvmw7sd52xgm9xnj"; depends=[Biostrings rJava]; }; + SEtools = derive2 { name="SEtools"; version="1.16.0"; sha256="01vrn6q2zm9nimhz194q8kvr4pc2szk0hhj2bkns7qji9h385sc4"; depends=[BiocParallel circlize data_table DESeq2 edgeR Matrix openxlsx pheatmap S4Vectors sechm SummarizedExperiment sva]; }; + SGCP = derive2 { name="SGCP"; version="1.2.0"; sha256="1cc0brhw77b73nircb3n2ghbihdjmk7l11s8nmkvljydx6b52sja"; depends=[annotate caret DescTools dplyr expm genefilter ggplot2 ggridges GO_db GOstats graph openxlsx org_Hs_eg_db plyr RColorBrewer reshape2 Rgraphviz RSpectra SummarizedExperiment xtable]; }; + SGSeq = derive2 { name="SGSeq"; version="1.36.0"; sha256="1h44r0frrw54s9nqa539ifg270ggmm634gj9cyhn4z7nhxxh134c"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges igraph IRanges Rsamtools rtracklayer RUnit S4Vectors SummarizedExperiment]; }; + SIAMCAT = derive2 { name="SIAMCAT"; version="2.6.0"; sha256="09m0qjgd6rmqdqxb55g004azjvjm8abfylgrp3k7qlbql5b087bw"; depends=[beanplot corrplot glmnet gridBase gridExtra infotheo lgr LiblineaR lmerTest matrixStats mlr3 mlr3learners mlr3tuning paradox phyloseq pROC progress PRROC RColorBrewer scales stringr]; }; + SICtools = derive2 { name="SICtools"; version="1.32.0"; sha256="0bcajjvkaxmr8bdij8xln7a3nmxbm7jkjvg2v6p8kd0xr3q9a70q"; depends=[Biostrings doParallel GenomicRanges IRanges matrixStats plyr Rsamtools stringr]; }; + SIM = derive2 { name="SIM"; version="1.72.0"; sha256="0ygc7xb3ywp24b3qgsmigvb81p46rbgb2yglwig1fjzjw920fvfk"; depends=[globaltest quantreg quantsmooth]; }; + SIMAT = derive2 { name="SIMAT"; version="1.34.0"; sha256="1n96ydczx3frb01ww3qj5ad18dbxr8ak3bi44lgnb71lalw2489x"; depends=[ggplot2 mzR Rcpp reshape2]; }; + SIMD = derive2 { name="SIMD"; version="1.20.0"; sha256="0am1k5k2ma6nwc5ryil01fvmq8bchqkr4nn7yl5z2l5p5dnvwkwj"; depends=[edgeR methylMnM statmod]; }; + SIMLR = derive2 { name="SIMLR"; version="1.28.0"; sha256="1whg4z0m8j3f1vx473xdblkx8dzl3qmj9lnd52bvkxms9013mysy"; depends=[Matrix pracma Rcpp RcppAnnoy RSpectra]; }; + SLqPCR = derive2 { name="SLqPCR"; version="1.68.0"; sha256="1p6fi4i1xq7gkbci9ay9nn70fm5qm7r1xj3mfiksmjdsagz51jfp"; depends=[]; }; + SMAD = derive2 { name="SMAD"; version="1.18.0"; sha256="167hwqv02q9crzlby5kgdzqsyd6h2hwav35bvxh2wn4skg6mfyc7"; depends=[dplyr magrittr Rcpp RcppAlgos tidyr]; }; + SMAP = derive2 { name="SMAP"; version="1.66.0"; sha256="0m6jvb3jpnk36cv8grj1s3af6nm9xnn3x0mxkrwfbpgzvcn5735n"; depends=[]; }; + SMITE = derive2 { name="SMITE"; version="1.30.0"; sha256="0hz0wjfw43l1s3hdmwvpy3623ps8alhblc1lb06dnx0pa7r3gljd"; depends=[AnnotationDbi Biobase BioNet geneLenDataBase GenomicRanges ggplot2 goseq Hmisc igraph IRanges KEGGREST org_Hs_eg_db plyr reactome_db S4Vectors scales]; }; + SNAGEE = derive2 { name="SNAGEE"; version="1.42.0"; sha256="1mchl07vkdai2w9f65620say9p1gsqxbfcylawncixjir0nj7w8h"; depends=[SNAGEEdata]; }; + SNPRelate = derive2 { name="SNPRelate"; version="1.36.0"; sha256="0jw9ziz0a472mnnvmqwas5w646xfgx8dn1bdpwz8c99m663d8ayp"; depends=[gdsfmt]; }; + SNPediaR = derive2 { name="SNPediaR"; version="1.28.0"; sha256="1pibr18xxq4q1rrsz0cvnajkfp6gv6n5c8i12cj0s8b280yllkg1"; depends=[jsonlite RCurl]; }; + SNPhood = derive2 { name="SNPhood"; version="1.32.0"; sha256="0af73i20bj15v3s6zfmbmdcc2iy3mvqdkkkjs3c1hij3xl8l9vif"; depends=[BiocGenerics BiocParallel Biostrings checkmate cluster data_table DESeq2 GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges lattice RColorBrewer reshape2 Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; + SOMNiBUS = derive2 { name="SOMNiBUS"; version="1.10.0"; sha256="12ds311rk4ln2hahnyqwdxzvfkpcd4lhfhrv1qhn8rmjy5blnijg"; depends=[annotatr BiocManager bsseq data_table GenomeInfoDb GenomicRanges ggplot2 IRanges Matrix mgcv reshape2 rtracklayer S4Vectors tidyr VGAM yaml]; }; + SPEM = derive2 { name="SPEM"; version="1.42.0"; sha256="1iycjss3m3z0q0jfgzwa2jxzrnbskvsza2y852k18mmvzby4gsbs"; depends=[Biobase Rsolnp]; }; + SPIA = derive2 { name="SPIA"; version="2.54.0"; sha256="091plgvpsmv4x6h19awqkiqdkxjdn9jm5mh52y7m77qgybnjpsm5"; depends=[KEGGgraph]; }; + SPIAT = derive2 { name="SPIAT"; version="1.4.1"; sha256="144x5vzlwikn1wnplca15gw9sz0pnwzb4hqwd1f2rfx5hn7ksn1g"; depends=[apcluster dbscan dittoSeq dplyr ggplot2 gridExtra gtools mmand pracma RANN raster reshape2 rlang sp SpatialExperiment spatstat_explore spatstat_geom SummarizedExperiment tibble vroom]; }; + SPLINTER = derive2 { name="SPLINTER"; version="1.28.0"; sha256="1nlyq1ljbark29bkf5qc7p1r37ndicv2rb4zn9w33qzpl9rcc1zx"; depends=[biomaRt Biostrings BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 googleVis Gviz IRanges plyr S4Vectors seqLogo stringr]; }; + SPOTlight = derive2 { name="SPOTlight"; version="1.6.3"; sha256="1r1bxhri1qdk5pr46gbxwz81g2w678nksabiw7hdwvkck5ba275j"; depends=[ggplot2 Matrix matrixStats NMF nnls SingleCellExperiment]; }; + SPsimSeq = derive2 { name="SPsimSeq"; version="1.12.0"; sha256="0cfh6hdzxylm7y1clza0blcx5pq1l6cwrflw8mlfqaasiw46jiqn"; depends=[edgeR fitdistrplus Hmisc limma mvtnorm phyloseq SingleCellExperiment WGCNA]; }; + SQLDataFrame = derive2 { name="SQLDataFrame"; version="1.16.0"; sha256="057bw12x0anr0rmjwyrvssdln65ffqgn678bpsfrii5n3fi19jk4"; depends=[BiocGenerics DBI dbplyr dplyr lazyeval RSQLite S4Vectors tibble]; }; + SQUADD = derive2 { name="SQUADD"; version="1.52.0"; sha256="0vg7mhx2aldk53jdgy4k8yk3jyjwklmp13mxch7cxinr8bzbyjh6"; depends=[RColorBrewer]; }; + SRAdb = derive2 { name="SRAdb"; version="1.64.0"; sha256="1pvyakg4pj61m2nwk0pljvalimr5r4siwx76a6yszqlrgphmxbg5"; depends=[GEOquery graph RCurl RSQLite]; }; + STATegRa = derive2 { name="STATegRa"; version="1.38.0"; sha256="0p2h6bq6fzab2rs3sb6194nqjk0jav6asc6h8zmzpm2fk5ciq1dk"; depends=[affy Biobase calibrate edgeR foreach ggplot2 gplots gridExtra limma MASS]; }; + STRINGdb = derive2 { name="STRINGdb"; version="2.14.0"; sha256="1ffn73sx0qbzbh8cjil9r159g0fjnvi6y8rlbg6nf7p3zx3aya54"; depends=[gplots hash igraph plotrix plyr png RColorBrewer RCurl sqldf]; }; + STdeconvolve = derive2 { name="STdeconvolve"; version="1.6.0"; sha256="16vw0y8ywsjspjmra94hl854ckdga6zfg5klpjp9w9vxsl75wb0p"; depends=[BiocParallel clue ggplot2 liger Matrix mgcv reshape2 scatterpie slam topicmodels viridis]; }; + SUITOR = derive2 { name="SUITOR"; version="1.4.0"; sha256="0aqh8sfkzwfws735k7b7r54cd3gq07fi1gvl2n377rx91qqkdy6w"; depends=[BiocParallel ggplot2]; }; + SVMDO = derive2 { name="SVMDO"; version="1.2.7"; sha256="12q0rpjnzbgjjvqdj6wplzd2fzaq75gad6dmdz8wvx9qf91x08d2"; depends=[AnnotationDbi BSDA caret caTools data_table DOSE dplyr e1071 golem klaR nortest org_Hs_eg_db shiny shinyFiles shinytitle sjmisc SummarizedExperiment survival]; }; + SWATH2stats = derive2 { name="SWATH2stats"; version="1.32.1"; sha256="14ksg02cpp40pbk6qid4j94lcjzrqb4ry5rxr3914fr04y85jg3x"; depends=[biomaRt data_table ggplot2 reshape2]; }; + SamSPECTRAL = derive2 { name="SamSPECTRAL"; version="1.56.0"; sha256="1w3lddbqy52b34430kyal2h86xb34bi7l8f30pjgv0kjwd24i0a9"; depends=[]; }; + Scale4C = derive2 { name="Scale4C"; version="1.24.0"; sha256="0rjlyh0m1vk75316zhqcv4j4jjdqgwnkqym03qcqnqb06fzjxxkr"; depends=[GenomicRanges IRanges smoothie SummarizedExperiment]; }; + ScaledMatrix = derive2 { name="ScaledMatrix"; version="1.10.0"; sha256="1aigca0s8cmi46458pl9p9vwlkrmqawbgi0xmbwslz646x2s2h4a"; depends=[DelayedArray Matrix S4Vectors]; }; + Sconify = derive2 { name="Sconify"; version="1.22.0"; sha256="1pbgigqbvvaz5ywsmp4j83ivcmpzw4x2915pf12aafxmc28xzkky"; depends=[dplyr flowCore FNN ggplot2 magrittr readr Rtsne tibble]; }; + ScreenR = derive2 { name="ScreenR"; version="1.4.0"; sha256="122vzawz6bpaqnv9mxn56a9n3158v6yz3qb0z9h6fb99r59q7cm1"; depends=[dplyr edgeR ggplot2 ggvenn limma magrittr patchwork purrr rlang scales stringr tibble tidyr tidyselect]; }; + SemDist = derive2 { name="SemDist"; version="1.36.0"; sha256="160zf6913hrjgb8qnynm5nx21a1317sfsr57qjbz1sbd3pmcz1iz"; depends=[annotate AnnotationDbi GO_db]; }; + SeqArray = derive2 { name="SeqArray"; version="1.42.0"; sha256="0zs60yh3x6kgy6izn11d400vw59ww2w6bmhg6fw5ijinknyr3ixc"; depends=[Biostrings gdsfmt GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + SeqGSEA = derive2 { name="SeqGSEA"; version="1.42.0"; sha256="0gg6v2r78gskmpdcdc4km82mcyz2p8b2rmmdkh47bp0sa4pr4j61"; depends=[Biobase biomaRt DESeq2 doParallel]; }; + SeqGate = derive2 { name="SeqGate"; version="1.12.0"; sha256="0pkyvws1iq1gjs3qdqxsnhq4ywg3zy6qa121y3g6xyfqviq27hv3"; depends=[BiocManager GenomicRanges S4Vectors SummarizedExperiment]; }; + SeqSQC = derive2 { name="SeqSQC"; version="1.24.0"; sha256="0vjah085hr50pvkgm2sscpa97fvhsglcwvj5jb08v2liz1vzm3zb"; depends=[e1071 ExperimentHub gdsfmt GenomicRanges GGally ggplot2 IRanges RColorBrewer reshape2 rmarkdown S4Vectors SNPRelate]; }; + SeqVarTools = derive2 { name="SeqVarTools"; version="1.40.0"; sha256="19f2k5daysj81ghr9625yk6ls008x83dlxsi1qyl5w9fgl8zwc1b"; depends=[Biobase BiocGenerics data_table gdsfmt GenomicRanges GWASExactHW IRanges logistf Matrix S4Vectors SeqArray]; }; + SharedObject = derive2 { name="SharedObject"; version="1.16.0"; sha256="08gwk107j43qca3sgi20fiziq9xaf88z1j91d2xrzpgijbs01zbp"; depends=[BH BiocGenerics Rcpp]; }; + ShortRead = derive2 { name="ShortRead"; version="1.60.0"; sha256="0fgiszb5qhplppfngpi4s33sx62ff5sdhd6n31a3b6l7fnlvk51m"; depends=[Biobase BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges hwriter IRanges lattice latticeExtra Rhtslib Rsamtools S4Vectors XVector zlibbioc]; }; + SiPSiC = derive2 { name="SiPSiC"; version="1.2.1"; sha256="0px5xsbp9rm8bp5y2y2qhj10vfrd6mrm9l8457h4acdadjsga72x"; depends=[Matrix SingleCellExperiment]; }; + SigCheck = derive2 { name="SigCheck"; version="2.34.0"; sha256="1lnsdcq1j8ih1l4r0c1i21qgcafl3wsyancy6svj7crg1fxndarc"; depends=[Biobase BiocParallel e1071 MLInterfaces survival]; }; + SigFuge = derive2 { name="SigFuge"; version="1.40.0"; sha256="010ma9z6y1qxd8sm009vk1qb65p1n2vbwyz3agvzlj2xzjd0aamj"; depends=[GenomicRanges ggplot2 matlab reshape sigclust]; }; + SigsPack = derive2 { name="SigsPack"; version="1.16.0"; sha256="1sdjgc1c0xpx7xk6rp4l95dknr92b097rhk7q28893xglx1khizm"; depends=[Biobase Biostrings BSgenome GenomeInfoDb GenomicRanges quadprog rtracklayer SummarizedExperiment VariantAnnotation]; }; + SimBindProfiles = derive2 { name="SimBindProfiles"; version="1.40.0"; sha256="0adcyw4x7yw4v20bwx4fzrhqd7g1r9fhpr1nqqnwkg44b51rdm6z"; depends=[Biobase limma mclust Ringo]; }; + SimBu = derive2 { name="SimBu"; version="1.4.3"; sha256="1zlb8r441pz1sp9wj3ylz65xzry1jd4y6f97nl9qwyqvyxf0nb63"; depends=[basilisk BiocParallel data_table dplyr ggplot2 Matrix phyloseq proxyC RColorBrewer RCurl reticulate sparseMatrixStats SummarizedExperiment tidyr]; }; + SimFFPE = derive2 { name="SimFFPE"; version="1.14.0"; sha256="0qnj0lj08sqaihx83fvkszp0nqsyc3azfwiyzzdcp42np7k7w375"; depends=[Biostrings doParallel dplyr foreach GenomicRanges IRanges Rsamtools truncnorm]; }; + SingleCellExperiment = derive2 { name="SingleCellExperiment"; version="1.24.0"; sha256="0q44n97mly1ldh52r0sb1jwhz8bn4n7sfw99qs5h4s44w9s0fry4"; depends=[BiocGenerics DelayedArray GenomicRanges S4Vectors SummarizedExperiment]; }; + SingleCellSignalR = derive2 { name="SingleCellSignalR"; version="1.14.0"; sha256="0y8f761n0bkwd3smisxzhzpfd2lgzgxvg29j4xz7c604lx91zn0h"; depends=[BiocManager circlize data_table edgeR foreach gplots igraph limma multtest pheatmap Rtsne scran stringr]; }; + SingleMoleculeFootprinting = derive2 { name="SingleMoleculeFootprinting"; version="1.10.0"; sha256="15mhir2mlyq0qqadm6b1856z40dm1fmvzq8br07vqdmq5q7dzx95"; depends=[BiocGenerics Biostrings BSgenome data_table GenomeInfoDb GenomicRanges IRanges plyr QuasR RColorBrewer]; }; + SingleR = derive2 { name="SingleR"; version="2.4.1"; sha256="0zlv45diasff5ipxp99dddswclrzzdcmkqp278fm2cj7aibvb3sd"; depends=[beachmat BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats Matrix Rcpp S4Vectors SummarizedExperiment]; }; + SomaticSignatures = derive2 { name="SomaticSignatures"; version="2.38.0"; sha256="0s9kjjh1n4a55ycjvcw8ymjcclcj8b35aygx4x1k5af1hf3f7wyb"; depends=[Biobase Biostrings GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges NMF pcaMethods proxy reshape2 S4Vectors VariantAnnotation]; }; + SpacePAC = derive2 { name="SpacePAC"; version="1.40.0"; sha256="0b9gpv1jr09cd7q8n63jln13dh2gxp463wlxf4gjm628bxnd4ld2"; depends=[iPAC]; }; + Spaniel = derive2 { name="Spaniel"; version="1.16.0"; sha256="0chdzslsgy0vy14hbzwsgvx48gibldnpk8dax01znzpckn7cydza"; depends=[dplyr DropletUtils ggplot2 igraph jpeg jsonlite magrittr png S4Vectors scater scran Seurat shiny SingleCellExperiment SummarizedExperiment]; }; + SparseArray = derive2 { name="SparseArray"; version="1.2.3"; sha256="19cy1nmmi65fxh012ymgp1kg112yl1m0khcs4y034p5iwlfv7fp6"; depends=[BiocGenerics IRanges Matrix MatrixGenerics matrixStats S4Arrays S4Vectors XVector]; }; + SparseSignatures = derive2 { name="SparseSignatures"; version="2.12.0"; sha256="1mw13hhfh4810czvdyr7yfz1ydnjdyil4fx1xr1nq5p940pv6kq3"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges NMF nnlasso nnls reshape2]; }; + SpatialCPie = derive2 { name="SpatialCPie"; version="1.18.0"; sha256="10ypjra117w1n5344vjdn44rzwk8yf32y9lyig5i8nch386bli85"; depends=[colorspace data_table digest dplyr ggforce ggiraph ggplot2 ggrepel igraph lpSolve purrr readr rlang shiny shinycssloaders shinyjs shinyWidgets SummarizedExperiment tibble tidyr tidyselect zeallot]; }; + SpatialDecon = derive2 { name="SpatialDecon"; version="1.12.0"; sha256="1lwhx6yqs5alc0ppf3rq51jfgwx5rm4dljmvlpr3nrjzy5h1gbvv"; depends=[Biobase GeomxTools logNormReg Matrix repmis SeuratObject]; }; + SpatialExperiment = derive2 { name="SpatialExperiment"; version="1.12.0"; sha256="1s42jzq95f662h39zmbf06qmrrglbch8sgygpnwqblrjbrqgm7n4"; depends=[BiocFileCache BiocGenerics magick rjson S4Vectors SingleCellExperiment SummarizedExperiment]; }; + SpatialFeatureExperiment = derive2 { name="SpatialFeatureExperiment"; version="1.4.0"; sha256="1ys7rkamcqpcby95vrskqmm4xka84vvv79k1svxnjsl4plwpqzx6"; depends=[BiocGenerics BiocNeighbors BiocParallel Matrix rjson rlang S4Vectors sf SingleCellExperiment SpatialExperiment spdep SummarizedExperiment terra]; }; + SpatialOmicsOverlay = derive2 { name="SpatialOmicsOverlay"; version="1.2.1"; sha256="0smwr332zxxi6wp0xsxwj2bp42jn92n7wdbhdf3dmmcgwbgd3z37"; depends=[base64enc Biobase BiocFileCache data_table dplyr EBImage GeomxTools ggplot2 ggtext magick pbapply plotrix RBioFormats readxl S4Vectors scattermore stringr XML]; }; + SpeCond = derive2 { name="SpeCond"; version="1.56.0"; sha256="1g3qjqlxnkqjin8qyq2h5qrski6slc3bwbwqfrnlykhshmrj148q"; depends=[Biobase fields hwriter mclust RColorBrewer]; }; + Spectra = derive2 { name="Spectra"; version="1.12.0"; sha256="07zs9x5fzxzwicjc5x29sv33yidmq1ar70ss91py094zbw9i63qy"; depends=[BiocGenerics BiocParallel fs IRanges MetaboCoreUtils MsCoreUtils ProtGenerics S4Vectors]; }; + SpectralTAD = derive2 { name="SpectralTAD"; version="1.18.0"; sha256="0f22j4n3zzgd01snh254yhsa6z3qzaa2i8ylc9bc6jj9ifivn43q"; depends=[BiocParallel cluster dplyr GenomicRanges HiCcompare magrittr Matrix PRIMME]; }; + SpidermiR = derive2 { name="SpidermiR"; version="1.32.0"; sha256="07s421c8ashww8x99ac18fy1lvjl4zmm3jsz0fggw1gvii172c1x"; depends=[AnnotationDbi gdata httr igraph miRNAtap miRNAtap_db org_Hs_eg_db]; }; + SpliceWiz = derive2 { name="SpliceWiz"; version="1.4.1"; sha256="0hkly0wi7nqwsnqf0pqr48q3qpq1sjyzsfpbar7qzwhar9xmcr2p"; depends=[AnnotationHub BiocFileCache BiocGenerics BiocParallel Biostrings BSgenome data_table DelayedArray DelayedMatrixStats DT fst genefilter GenomeInfoDb GenomicRanges ggplot2 HDF5Array heatmaply htmltools IRanges magrittr matrixStats NxtIRFdata ompBAM patchwork pheatmap plotly progress R_utils RColorBrewer Rcpp RcppProgress rhandsontable rhdf5 rtracklayer rvest S4Vectors scales shiny shinydashboard shinyFiles shinyWidgets stringi SummarizedExperiment zlibbioc]; }; + SplicingFactory = derive2 { name="SplicingFactory"; version="1.10.0"; sha256="0vk2cy7h9pypm6sk885y5i7gxj7dz8h690zd51la6ygjffnw4jwi"; depends=[SummarizedExperiment]; }; + SplicingGraphs = derive2 { name="SplicingGraphs"; version="1.42.0"; sha256="1nayd64paddq4qm0k6m6lhjdy7rbz16ma394a81j10l12h378p34"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph igraph IRanges Rgraphviz Rsamtools S4Vectors]; }; + SpotClean = derive2 { name="SpotClean"; version="1.4.1"; sha256="06na6hbzb9sf7gq86b9zb08hfy2pflxsgql1clwdn63b4bhrxc34"; depends=[dplyr ggplot2 Matrix RColorBrewer readbitmap rhdf5 rjson rlang S4Vectors Seurat SpatialExperiment SummarizedExperiment tibble viridis]; }; + StarBioTrek = derive2 { name="StarBioTrek"; version="1.28.0"; sha256="0cpgn0zcimg18yybfgrjzdczsinvx6n81jjm850gbi76ararq8sc"; depends=[AnnotationDbi e1071 ggplot2 graphite igraph MLmetrics reshape2 ROCR SpidermiR]; }; + Statial = derive2 { name="Statial"; version="1.4.5"; sha256="1hrjkncgd1vppbxc66vp1i5kliqpdp0m4w7wqc48zw8pnns4555q"; depends=[BiocParallel concaveman data_table dplyr ggplot2 limma magrittr plotly purrr ranger S4Vectors SingleCellExperiment SpatialExperiment spatstat_explore spatstat_geom stringr SummarizedExperiment tibble tidyr tidyselect]; }; + Streamer = derive2 { name="Streamer"; version="1.48.0"; sha256="0qijx9bf681xll75vwfzg14xnnlyb5svb8slanhzjw9czxr4axmb"; depends=[BiocGenerics graph RBGL]; }; + Structstrings = derive2 { name="Structstrings"; version="1.18.0"; sha256="10j1khhjd30wn9yfz4jhgx34z0yyijgwgydr8ric52337vwpx6dl"; depends=[BiocGenerics Biostrings crayon IRanges S4Vectors stringi stringr XVector]; }; + StructuralVariantAnnotation = derive2 { name="StructuralVariantAnnotation"; version="1.18.0"; sha256="1h3l3xbxwf2w2dl0qz72v68h5g77zhd2rr0g86l2dhn67mhy8ml2"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges rlang rtracklayer S4Vectors stringr SummarizedExperiment VariantAnnotation]; }; + SubCellBarCode = derive2 { name="SubCellBarCode"; version="1.18.0"; sha256="12a0ma7xdmmnr5ib0lvmk6981jyy8ypb2y0a1vq48f3ygnhpdfw3"; depends=[AnnotationDbi caret e1071 ggplot2 ggrepel gridExtra networkD3 org_Hs_eg_db Rtsne scatterplot3d]; }; + SummarizedBenchmark = derive2 { name="SummarizedBenchmark"; version="2.20.0"; sha256="16gzlkyf76fcd46ck417sxh86smivmaggqvyg0v9v0f4jac7610g"; depends=[BiocGenerics BiocParallel crayon digest dplyr ggplot2 mclust rlang S4Vectors sessioninfo stringr SummarizedExperiment tibble tidyr UpSetR]; }; + SummarizedExperiment = derive2 { name="SummarizedExperiment"; version="1.32.0"; sha256="1949k2658drmcrrr7v6748b40g2qym39n0ch50jxf0xmmlb1r04z"; depends=[Biobase BiocGenerics DelayedArray GenomeInfoDb GenomicRanges IRanges Matrix MatrixGenerics S4Arrays S4Vectors]; }; + Summix = derive2 { name="Summix"; version="2.8.0"; sha256="09bihbw5lhkrj88gmbcm63canvrsakwmddhb30j3vyppxbj2jvkp"; depends=[nloptr]; }; + SwathXtend = derive2 { name="SwathXtend"; version="2.24.0"; sha256="0fwv3phxbana637ydvlidhsrmq5x2vwcad4gj7mx2lbayk6k7dhm"; depends=[e1071 lattice openxlsx VennDiagram]; }; + SynExtend = derive2 { name="SynExtend"; version="1.14.0"; sha256="1vyi532mqj01szvjbfaxmyyyh1gcdb3pdrdvk1h1jbc2k1rmlk7n"; depends=[Biostrings DECIPHER IRanges S4Vectors]; }; + SynMut = derive2 { name="SynMut"; version="1.18.0"; sha256="02mpbivm30y102g64cyzky675dblln5w8ar3wv44k2rlgdvm4xfm"; depends=[BiocGenerics Biostrings seqinr stringr]; }; + TADCompare = derive2 { name="TADCompare"; version="1.12.0"; sha256="103kkfrpbbzv96qkmc2imi4mzzf6y6fvgpi1pzr6h92j2ahz9mk5"; depends=[cluster cowplot dplyr ggplot2 ggpubr HiCcompare magrittr Matrix PRIMME RColorBrewer reshape2 tidyr]; }; + TAPseq = derive2 { name="TAPseq"; version="1.14.1"; sha256="14df2wp3ll87lzcww5lxic4y2ymyzmidibrf5dmgplkgxrnhypgg"; depends=[BiocGenerics BiocParallel Biostrings BSgenome dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges S4Vectors tidyr]; }; + TBSignatureProfiler = derive2 { name="TBSignatureProfiler"; version="1.14.0"; sha256="0cixafwsp7fd5j0zfrf63vsljv9ryj3bd0idy3jcg6gip1l92bnn"; depends=[ASSIGN BiocParallel ComplexHeatmap DESeq2 DT edgeR gdata ggplot2 GSVA magrittr RColorBrewer reshape2 rlang ROCit S4Vectors singscore SummarizedExperiment]; }; + TCC = derive2 { name="TCC"; version="1.42.0"; sha256="0yy960fkfral1jr1myja40wmb5pzh6drigdsh62azylb3d9a7cmk"; depends=[baySeq DESeq2 edgeR ROC]; }; + TCGAbiolinks = derive2 { name="TCGAbiolinks"; version="2.30.0"; sha256="1k8xiv4bmil420176ckfda2r6y0s46dk1cm8dbywav86q28bmzzx"; depends=[biomaRt data_table downloader dplyr GenomicRanges ggplot2 httr IRanges jsonlite knitr plyr purrr R_utils readr rvest S4Vectors stringr SummarizedExperiment TCGAbiolinksGUI_data tibble tidyr XML xml2]; }; + TCGAutils = derive2 { name="TCGAutils"; version="1.22.2"; sha256="16pcz52ynx0syb5bcnkywllqxcfp7jipqgzgjr7q70k1z13ah7a3"; depends=[AnnotationDbi BiocBaseUtils BiocGenerics GenomeInfoDb GenomicDataCommons GenomicFeatures GenomicRanges IRanges MultiAssayExperiment RaggedExperiment rvest S4Vectors stringr SummarizedExperiment xml2]; }; + TCseq = derive2 { name="TCseq"; version="1.26.0"; sha256="0k97bxzwx3wj5jf558a5z51cjb841ga34lxgss3im1awcs99m3vn"; depends=[BiocGenerics cluster e1071 edgeR GenomicAlignments GenomicRanges ggplot2 IRanges locfit reshape2 Rsamtools SummarizedExperiment]; }; + TDbasedUFE = derive2 { name="TDbasedUFE"; version="1.2.0"; sha256="1n0ljmifcj38lbmyi1vaw05pxim8mvm75zbr42sl1n3p4vyrkvb6"; depends=[GenomicRanges MOFAdata readr rTensor shiny tximport tximportData]; }; + TDbasedUFEadv = derive2 { name="TDbasedUFEadv"; version="1.2.0"; sha256="07r45zv33rlmahcwrhvkr0m437p86yc7hampa91ddk19rh7x1151"; depends=[Biobase DOSE enrichplot enrichR GenomicRanges hash RTCGA rTensor shiny STRINGdb TDbasedUFE]; }; + TEKRABber = derive2 { name="TEKRABber"; version="1.6.0"; sha256="0l0ri7dg7jc3k7xyhwkf5rnmsgm4192143vxzc1j6fqhjl4q95bl"; depends=[apeglm biomaRt DESeq2 dplyr magrittr Rcpp SCBN]; }; + TENxIO = derive2 { name="TENxIO"; version="1.4.0"; sha256="1191xc69nqqzpm6l24k9bil2nzkjvximjrnkg61byivp45zf9v5y"; depends=[BiocBaseUtils BiocGenerics BiocIO GenomeInfoDb GenomicRanges Matrix MatrixGenerics R_utils RCurl readr S4Vectors SingleCellExperiment SummarizedExperiment]; }; + TEQC = derive2 { name="TEQC"; version="4.24.0"; sha256="0n5zw3ylkqikq0b1wwla89v8h4fksn2r7dcs57ljwkva03zlp9fa"; depends=[Biobase BiocGenerics hwriter IRanges Rsamtools]; }; + TFARM = derive2 { name="TFARM"; version="1.24.0"; sha256="1yjf1ck99hicm8fc14bd1rlkfx7infcy7iwh9dxrws6lggg1xh90"; depends=[arules fields GenomicRanges gplots stringr]; }; + TFBSTools = derive2 { name="TFBSTools"; version="1.40.0"; sha256="18msr889nygk1c3wsjxc9bv989zakkl9f1h2a6cnfy8rxhbxpvwq"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome caTools CNEr DBI DirichletMultinomial GenomeInfoDb GenomicRanges gtools IRanges RSQLite rtracklayer S4Vectors seqLogo TFMPvalue XML XVector]; }; + TFEA_ChIP = derive2 { name="TFEA.ChIP"; version="1.22.0"; sha256="0fawr8g13kw06z4a0k2vk38mgs4lv0ichrx0qxvn2qnbkx12f40g"; depends=[biomaRt dplyr GenomicFeatures GenomicRanges IRanges org_Hs_eg_db R_utils]; }; + TFHAZ = derive2 { name="TFHAZ"; version="1.24.0"; sha256="0084ida6g6sr2y56vi7wfxg5wy4wcg6jiqzjcw52pg14j7ha5qli"; depends=[GenomicRanges IRanges ORFik S4Vectors]; }; + TFutils = derive2 { name="TFutils"; version="1.22.0"; sha256="0f1rimk2qsfvyznm70zqa5xjcm21fz66fwyf1i48f7pfdwykbzig"; depends=[AnnotationDbi BiocFileCache dplyr DT GSEABase httr magrittr miniUI org_Hs_eg_db readxl rjson Rsamtools shiny]; }; + TIN = derive2 { name="TIN"; version="1.34.0"; sha256="0spk4zxx6w26wncnbp26fsiqs8i5ggh7wq3b8w61chl6klxx8nbb"; depends=[aroma_affymetrix data_table impute squash stringr WGCNA]; }; + TMixClust = derive2 { name="TMixClust"; version="1.24.0"; sha256="0qcdm3mv7yx48gz0af7h7bcgisyq3vn2qvbxzcim0fp4p9cgwrm2"; depends=[Biobase BiocParallel cluster flexclust gss mvtnorm SPEM zoo]; }; + TNBC_CMS = derive2 { name="TNBC.CMS"; version="1.18.0"; sha256="1syygq9br5icbjbmi1kq9gs7g3bw1vzmy8mlf8ga2rk1lw6ika90"; depends=[e1071 forestplot GGally ggplot2 ggpubr GSVA pheatmap pracma quadprog R_utils RColorBrewer SummarizedExperiment survival]; }; + TOAST = derive2 { name="TOAST"; version="1.16.0"; sha256="00wpgs2zdrgrh9xmp6m5h9xgv85mhdi36qvwg9gwbz9i7cfabmy1"; depends=[corpcor doParallel EpiDISH GGally ggplot2 limma nnls quadprog SummarizedExperiment tidyr]; }; + TOP = derive2 { name="TOP"; version="1.2.0"; sha256="0dnvxjsqfamcyzhwdaw8dxzw0y4sv9kmfjirhvwdzpprp4230wzh"; depends=[assertthat caret ClassifyR directPA doParallel dplyr ggnewscale ggplot2 ggraph ggrepel ggthemes glmnet Hmisc igraph latex2exp limma magrittr plotly pROC purrr reshape2 statmod stringr survival tibble tidygraph tidyr]; }; + TPP = derive2 { name="TPP"; version="3.30.0"; sha256="10lfvd2mrqdpbmsx7whkyawzjm7qr4ral669038lsjds2zf0ihk6"; depends=[Biobase biobroom broom data_table doParallel dplyr foreach futile_logger ggplot2 gridExtra knitr limma magrittr MASS mefa nls2 openxlsx plyr purrr RColorBrewer RCurl reshape2 rmarkdown stringr tibble tidyr VennDiagram VGAM]; }; + TPP2D = derive2 { name="TPP2D"; version="1.18.0"; sha256="0iaf34zk99bgdbnx4ygbpz7pgn3qblq1rdb5z6i80wh59y4519ff"; depends=[BiocParallel doParallel dplyr foreach ggplot2 limma MASS openxlsx RCurl stringr tidyr]; }; + TREG = derive2 { name="TREG"; version="1.6.0"; sha256="0zxbqnwwl2a9d7v0a2gn132vw8f2xw0gdig48r47gzc91bn0fsz5"; depends=[Matrix purrr rafalib SummarizedExperiment]; }; + TRESS = derive2 { name="TRESS"; version="1.8.0"; sha256="1vlvfacr7q9m1phrfs4xj51i6ia54scv53zbwqq58ri06m4whcl7"; depends=[AnnotationDbi GenomicFeatures GenomicRanges IRanges Matrix matrixStats Rsamtools rtracklayer S4Vectors]; }; + TRONCO = derive2 { name="TRONCO"; version="2.34.0"; sha256="0d48hwpl561ns5fyr0z046mqnz6790fqszwyxll1dh0mjilslahc"; depends=[bnlearn circlize doParallel foreach gridExtra gtable gtools igraph iterators R_matlab RColorBrewer Rgraphviz scales xtable]; }; + TSAR = derive2 { name="TSAR"; version="1.0.0"; sha256="1kghp5w3fpbhj01hmz6q8zm72pa4c3vwwhqvvb0jax1p56ny6xdw"; depends=[dplyr ggplot2 ggpubr jsonlite magrittr mgcv minpack_lm openxlsx plotly readxl rhandsontable shiny shinyjs shinyWidgets stringr tidyr]; }; + TSCAN = derive2 { name="TSCAN"; version="1.40.0"; sha256="0lm3byz9j9ja9106c7jfrdjnyywvb9n0j630fsgma4w78flk5pli"; depends=[combinat DelayedArray fastICA ggplot2 gplots igraph Matrix mclust mgcv plyr S4Vectors shiny SingleCellExperiment SummarizedExperiment TrajectoryUtils]; }; + TTMap = derive2 { name="TTMap"; version="1.24.0"; sha256="1qsja2byl2skdb8qhrp3jia234ynzrzkn658abqf8ycc04nd8xwp"; depends=[Biobase colorRamps rgl SummarizedExperiment]; }; + TVTB = derive2 { name="TVTB"; version="1.28.0"; sha256="11s5v2q02q9rmrry70zdsp8z1dx3mdgkgf9v1c9jilrj7ays2000"; depends=[AnnotationFilter BiocGenerics BiocParallel Biostrings ensembldb ensemblVEP GenomeInfoDb GenomicRanges GGally ggplot2 Gviz IRanges limma reshape2 Rsamtools S4Vectors SummarizedExperiment VariantAnnotation]; }; + TargetDecoy = derive2 { name="TargetDecoy"; version="1.8.0"; sha256="03y4s21kbyj7kcsr86zjib0abz8cn5xg89lpss7ykdrrgmh2g0jb"; depends=[ggplot2 ggpubr miniUI mzID mzR shiny]; }; + TargetScore = derive2 { name="TargetScore"; version="1.40.0"; sha256="0lrnxdry9yrhxbrmvfhgmkmj0nfqq50sa0xdq8caypz996dkz4qi"; depends=[Matrix pracma]; }; + TargetSearch = derive2 { name="TargetSearch"; version="2.4.2"; sha256="1f6dw6jgbf22szg2kjmrrc9vggm5ihyawxp245gidsfxhz875ycq"; depends=[assertthat ncdf4]; }; + TileDBArray = derive2 { name="TileDBArray"; version="1.12.0"; sha256="1mx1mmwgh3p8mpwrbpzv31zmq7la7pxnwqmcm91svnxkd36061wj"; depends=[DelayedArray Rcpp S4Vectors tiledb]; }; + TimiRGeN = derive2 { name="TimiRGeN"; version="1.11.0"; sha256="104j3rdl1mfklqvpsr753zlplr001cqbkphbhf2xrcfw8si7bgr2"; depends=[biomaRt clusterProfiler dplyr FreqProf ggdendro gghighlight ggplot2 gplots gtools igraph Mfuzz MultiAssayExperiment RCy3 readxl reshape2 rWikiPathways scales stringr tidyr]; }; + TissueEnrich = derive2 { name="TissueEnrich"; version="1.22.0"; sha256="13wcph6vy17y9xh16zrwn6dvqsm7lzgi9lkmz05bhqvlrmqxhn6j"; depends=[dplyr ensurer ggplot2 GSEABase SummarizedExperiment tidyr]; }; + TitanCNA = derive2 { name="TitanCNA"; version="1.40.0"; sha256="1n82j9sgaizykgxs8i7dc4jbxxxhmqng850qyzzglzliyq8859nz"; depends=[BiocGenerics data_table dplyr foreach GenomeInfoDb GenomicRanges IRanges VariantAnnotation]; }; + TnT = derive2 { name="TnT"; version="1.24.0"; sha256="1y4v2rphdils0rvkjsyfynncvmn1js1n5d5qhqmc2v8rhh1wjyv5"; depends=[Biobase data_table GenomeInfoDb GenomicRanges htmlwidgets IRanges jsonlite knitr S4Vectors]; }; + ToxicoGx = derive2 { name="ToxicoGx"; version="2.6.0"; sha256="0cwgf2ha1lm8v1hxmgn0y4j47laz23kcf10nj394wdfd6ymgm2mq"; depends=[assertthat Biobase BiocGenerics BiocParallel caTools CoreGx data_table downloader dplyr ggplot2 jsonlite limma magrittr reshape2 S4Vectors scales SummarizedExperiment tibble tidyr]; }; + TrajectoryGeometry = derive2 { name="TrajectoryGeometry"; version="1.10.0"; sha256="00j01vy5qys3k9fvmpa7w1ajilj94ymayg7bxr2n7dqg2m5yfbia"; depends=[ggplot2 pracma rgl]; }; + TrajectoryUtils = derive2 { name="TrajectoryUtils"; version="1.10.0"; sha256="0pqdl0v16q90ffxla34rp07mq0if1q9izpbimfnq0rx7633mk95v"; depends=[igraph Matrix S4Vectors SingleCellExperiment SummarizedExperiment]; }; + TransView = derive2 { name="TransView"; version="1.46.0"; sha256="0knd6rxlgqrzacxax42zxm7k64kc5wqdsy7wanngc3psqla8g96m"; depends=[BiocGenerics GenomicRanges gplots IRanges Rhtslib S4Vectors zlibbioc]; }; + TreeAndLeaf = derive2 { name="TreeAndLeaf"; version="1.14.0"; sha256="131nbrngjldn0p5ghdr4rvwx3p5r04rdg5cqx61qvyja77nakpb1"; depends=[ape igraph RedeR]; }; + TreeSummarizedExperiment = derive2 { name="TreeSummarizedExperiment"; version="2.10.0"; sha256="1yvqixlivapasx0ircfhmc8ckr7sw86d9vfvnqj97p4r667x6z6g"; depends=[ape BiocGenerics BiocParallel Biostrings dplyr IRanges rlang S4Vectors SingleCellExperiment SummarizedExperiment treeio]; }; + Trendy = derive2 { name="Trendy"; version="1.24.1"; sha256="13plnyrr00m34dc25wqbk3ikxfd118vaz39z88ikhwa566k8kw5w"; depends=[BiocParallel DT gplots magrittr S4Vectors segmented shiny shinyFiles SummarizedExperiment]; }; + TurboNorm = derive2 { name="TurboNorm"; version="1.50.0"; sha256="0mwqd2y8h2g9lsjnkd9k2na7g5zrj89cs4balzyk45dbk8qvy5yk"; depends=[affy convert lattice limma marray]; }; + TypeInfo = derive2 { name="TypeInfo"; version="1.68.0"; sha256="1r299hi7kia0m6yhqc6n0qxzdbhk2lqrsnxgjiicgddy095cq1gs"; depends=[]; }; + UCell = derive2 { name="UCell"; version="2.6.2"; sha256="00v4b91f7y3zyndbl4wlfay8wljnqypfc05vrw15yr62d9smd35d"; depends=[BiocNeighbors BiocParallel data_table Matrix SingleCellExperiment SummarizedExperiment]; }; + UMI4Cats = derive2 { name="UMI4Cats"; version="1.12.0"; sha256="1imsndzvgz2ibhnb9y0cilr1kdkqnww9ncy1clviqjcb37iqy6w1"; depends=[annotate BiocFileCache BiocGenerics Biostrings BSgenome cowplot DESeq2 dplyr fda GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges magick magrittr org_Hs_eg_db R_utils rappdirs Rbowtie2 RColorBrewer regioneR reshape2 rlang Rsamtools S4Vectors scales ShortRead stringr SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene zoo]; }; + UNDO = derive2 { name="UNDO"; version="1.44.0"; sha256="0lj8y4fcfl91g3mf4mnixg509m7viwx5fcwmsbzw3a71anmgcifi"; depends=[Biobase BiocGenerics boot MASS nnls]; }; + Ularcirc = derive2 { name="Ularcirc"; version="1.20.0"; sha256="1f4vcrmxsv1daqdrdw4kzqjawi03m9n6s1dvrhn4v3dq3y7sc9hi"; depends=[AnnotationDbi AnnotationHub BiocGenerics Biostrings BSgenome data_table DT GenomeInfoDb GenomeInfoDbData GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel gsubfn mirbase_db moments Organism_dplyr plotgardener R_utils S4Vectors shiny shinydashboard shinyFiles shinyjs yaml]; }; + UniProt_ws = derive2 { name="UniProt.ws"; version="2.42.0"; sha256="0qpp6r705llmlf38a8nvgr1q198lj7bwrlvnph4mcyb9sz82ra3d"; depends=[AnnotationDbi BiocBaseUtils BiocFileCache BiocGenerics httpcache httr jsonlite progress rjsoncons RSQLite]; }; + Uniquorn = derive2 { name="Uniquorn"; version="2.22.0"; sha256="1rd0jk7ifc2mhsslgf7nc9mz3nbqbm6svv86lv8y2j3y4iyivgwp"; depends=[data_table doParallel foreach GenomicRanges IRanges R_utils stringr VariantAnnotation WriteXLS]; }; + VAExprs = derive2 { name="VAExprs"; version="1.8.0"; sha256="0m150khl1zlhx43br4j7m9sgwav3qsam27hdxfz5pa5acy1hd87r"; depends=[CatEncoders DeepPINCS DiagrammeR keras mclust purrr scater SingleCellExperiment SummarizedExperiment tensorflow]; }; + VCFArray = derive2 { name="VCFArray"; version="1.18.0"; sha256="0b2dnhr9nivkprk92zvmvyqcsf074dyp5x25hi77kzklvlip1a0h"; depends=[BiocGenerics DelayedArray GenomicFiles GenomicRanges Rsamtools S4Vectors VariantAnnotation]; }; + VDJdive = derive2 { name="VDJdive"; version="1.4.0"; sha256="1sd6gip0j77zsfq68dgxq1szp6vl4j7g2dvnsi1903691r6wdfkf"; depends=[BiocParallel cowplot ggplot2 gridExtra IRanges Matrix RColorBrewer Rcpp S4Vectors SingleCellExperiment SummarizedExperiment]; }; + VERSO = derive2 { name="VERSO"; version="1.12.0"; sha256="1wddzvvhmwv4y7zd1lg02zgmm3pwyz8nkn9c9vx55pnwa4p97igj"; depends=[ape data_tree Rfast]; }; + VaSP = derive2 { name="VaSP"; version="1.14.0"; sha256="0y5kc6dw2ll2c48avnvcw94iv6z6m89cghzlwwys0yawsgzj6pfy"; depends=[ballgown cluster GenomeInfoDb GenomicAlignments GenomicRanges IRanges matrixStats Rsamtools S4Vectors]; }; + VanillaICE = derive2 { name="VanillaICE"; version="1.64.0"; sha256="1kwmld6qwmy0ad1561w12lwhnh2cjlcqyb1mjz87ibznqvmpw95y"; depends=[Biobase BiocGenerics BSgenome_Hsapiens_UCSC_hg18 crlmm data_table foreach GenomeInfoDb GenomicRanges IRanges lattice MatrixGenerics matrixStats oligoClasses S4Vectors SummarizedExperiment]; }; + VarCon = derive2 { name="VarCon"; version="1.10.0"; sha256="19xwdbnrn407hsm67lrv4hsb04pi78y6ap917zxb8knjwi6wfy6l"; depends=[Biostrings BSgenome GenomicRanges ggplot2 IRanges shiny shinycssloaders shinyFiles]; }; + VariantAnnotation = derive2 { name="VariantAnnotation"; version="1.48.1"; sha256="0l9xkrvsrc3m65kdjcyir6jkpa718g7idziwr0pp5yaj84bd3xia"; depends=[AnnotationDbi Biobase BiocGenerics Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges MatrixGenerics Rhtslib Rsamtools rtracklayer S4Vectors SummarizedExperiment XVector zlibbioc]; }; + VariantExperiment = derive2 { name="VariantExperiment"; version="1.16.0"; sha256="1ibw2qzab9drn4y95k2s9aam0f2vimzjbq1kkpsqnm206051flwb"; depends=[Biostrings DelayedArray DelayedDataFrame GDSArray gdsfmt GenomicRanges IRanges S4Vectors SeqArray SNPRelate SummarizedExperiment]; }; + VariantFiltering = derive2 { name="VariantFiltering"; version="1.38.0"; sha256="01czx88dzqm8qv44kyy1n7b999wgfklxzgvmjh10chf677phnzsr"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores graph Gviz IRanges RBGL Rsamtools S4Vectors shiny shinyjs shinythemes shinyTree SummarizedExperiment VariantAnnotation XVector]; }; + VariantTools = derive2 { name="VariantTools"; version="1.44.0"; sha256="1ibg4cdpbv4ph3y4r90j8zfwr1cy1z33p4bazhzyi2zv3xa1nrq6"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicRanges IRanges Matrix Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; + VegaMC = derive2 { name="VegaMC"; version="3.40.0"; sha256="1s9vz2kjavsf7ja5bqmvcylawjh4gz3chvr251xgiq56n7wmyq08"; depends=[Biobase biomaRt]; }; + VennDetail = derive2 { name="VennDetail"; version="1.18.0"; sha256="09w3i0dp2lhjj4m62ql7ad98kflsyys73xnw76jj97cyqa0mgsxr"; depends=[dplyr futile_logger ggplot2 magrittr purrr tibble UpSetR VennDiagram]; }; + ViSEAGO = derive2 { name="ViSEAGO"; version="1.16.0"; sha256="1c20kbr640l69psbrn5a7xmrv6hgzyznmwdvbxbhdn96i1cirxk4"; depends=[AnnotationDbi AnnotationForge biomaRt data_table dendextend DiagrammeR DT dynamicTreeCut fgsea ggplot2 GO_db GOSemSim heatmaply htmlwidgets igraph plotly processx R_utils RColorBrewer scales topGO UpSetR]; }; + Voyager = derive2 { name="Voyager"; version="1.4.0"; sha256="0f7m8zs3ycb3hsk00qkpq196nagrm5cnz5383n21jlxil5q6ajp0"; depends=[BiocParallel bluster ggnewscale ggplot2 lifecycle Matrix matrixStats patchwork rlang RSpectra S4Vectors scales scico sf SingleCellExperiment SpatialExperiment SpatialFeatureExperiment spdep SummarizedExperiment terra]; }; + VplotR = derive2 { name="VplotR"; version="1.12.1"; sha256="0x6cdikwgva91xcqss69j28x27pzkpbac1c178x773nzxrybsh7v"; depends=[cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges magrittr RColorBrewer reshape2 Rsamtools S4Vectors zoo]; }; + Wrench = derive2 { name="Wrench"; version="1.20.0"; sha256="11g6a2315hllf197ssccybhv6i7p48n7bv2amzpgxs7bs7qg3k9d"; depends=[limma locfit matrixStats]; }; + XDE = derive2 { name="XDE"; version="2.48.0"; sha256="0xnxbyrdafcx5dqms0sqp70bm62w1g92mjidmj99jm50ymjxpfl9"; depends=[Biobase BiocGenerics genefilter GeneMeta gtools mvtnorm RColorBrewer siggenes]; }; + XINA = derive2 { name="XINA"; version="1.20.0"; sha256="1cnw2zbjfs8qcgqrx557g00m59h5pldcx788v9r4gn2f70rx7vx3"; depends=[alluvial ggplot2 gridExtra igraph mclust plyr STRINGdb]; }; + XNAString = derive2 { name="XNAString"; version="1.10.0"; sha256="0g47fdbgpvprx71qng0kdqicv2p0gk5pyx0c0zpa6ffv5mbhjhy4"; depends=[Biostrings BSgenome data_table formattable future_apply GenomicRanges IRanges Rcpp S4Vectors stringi stringr]; }; + XVector = derive2 { name="XVector"; version="0.42.0"; sha256="0h03imdl0pyy714kmddsdnsv69bd8kr7bhi9wq9z18y8ahg5cqx1"; depends=[BiocGenerics IRanges S4Vectors zlibbioc]; }; + Xeva = derive2 { name="Xeva"; version="1.18.0"; sha256="1qyr1caf63f0sc6mrww6sdn7hh44r90rz6xdslm26b1827gz9zfn"; depends=[BBmisc Biobase ComplexHeatmap doParallel downloader ggplot2 nlme PharmacoGx Rmisc scales]; }; + YAPSA = derive2 { name="YAPSA"; version="1.28.0"; sha256="07dxhaywad9ivkrc454hhizfw6a5yvarrc5fp5za2jgsznv408wl"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 circlize ComplexHeatmap corrplot dendextend doParallel dplyr GenomeInfoDb GenomicRanges GetoptLong ggbeeswarm ggplot2 gridExtra gtrellis KEGGREST limSolve magrittr PMCMRplus pracma reshape2 SomaticSignatures VariantAnnotation]; }; + ZygosityPredictor = derive2 { name="ZygosityPredictor"; version="1.2.0"; sha256="00vwrz9f8bcrksb41vklx1w8wp44vvbp5jac5bw5c405arman9nc"; depends=[DelayedArray dplyr GenomicAlignments GenomicRanges igraph IRanges purrr Rsamtools stringr tibble VariantAnnotation]; }; + a4 = derive2 { name="a4"; version="1.50.0"; sha256="1hdqnipg326z2k7vs6sc1brc9lvvhmr2l6cjp4f9a205g4q7r9rr"; depends=[a4Base a4Classif a4Core a4Preproc a4Reporting]; }; + a4Base = derive2 { name="a4Base"; version="1.50.0"; sha256="0hin5lpwa7cxa862jh3y7d8kq3q9bv76ri08b27jxzyr5p7xwcr2"; depends=[a4Core a4Preproc annaffy Biobase genefilter glmnet gplots limma mpm multtest]; }; + a4Classif = derive2 { name="a4Classif"; version="1.50.0"; sha256="1wxkyqyhb3mj04kmaisd09dapywjpc081ihaig5rs04k611ddvhi"; depends=[a4Core a4Preproc Biobase glmnet pamr ROCR varSelRF]; }; + a4Core = derive2 { name="a4Core"; version="1.50.0"; sha256="0iismcsnkyb7m4dwmxw5pyvscj2bhp6zw9hpdb2ff91viynbknq1"; depends=[Biobase glmnet]; }; + a4Preproc = derive2 { name="a4Preproc"; version="1.50.0"; sha256="19nf3bc0gdwixif50f3bs47a1kw1w1lir1dz4l8zqdp3h8gfmj60"; depends=[Biobase BiocGenerics]; }; + a4Reporting = derive2 { name="a4Reporting"; version="1.50.0"; sha256="16lgbwsgwp77x9a8c3hr1aqhp36skzz72xhbzm0a7w3kagmd8gn6"; depends=[xtable]; }; + aCGH = derive2 { name="aCGH"; version="1.80.0"; sha256="1qckqdil1cq8lbrj9di96w9934r1fp48xpmfdwp4f2vw9pjadi1q"; depends=[Biobase cluster multtest survival]; }; + abseqR = derive2 { name="abseqR"; version="1.20.0"; sha256="0s865nahgm0by2nvjydkjlhkj2sxmrvcrhw7rmm46ld4g10xsrc8"; depends=[BiocParallel BiocStyle circlize flexdashboard ggcorrplot ggdendro ggplot2 gridExtra knitr plotly plyr png RColorBrewer reshape2 rmarkdown stringr vegan VennDiagram]; }; + acde = derive2 { name="acde"; version="1.32.0"; sha256="1rqyjj4lgqxs372qx8p3qx2napww0djh4jz8hzgv86x9r202kk9p"; depends=[boot]; }; + adSplit = derive2 { name="adSplit"; version="1.72.0"; sha256="0av0kji4r788cn5808g13svqpydq6xk4d2awpzpsckz7xbjyx0ya"; depends=[AnnotationDbi Biobase cluster GO_db KEGGREST multtest]; }; + adductomicsR = derive2 { name="adductomicsR"; version="1.18.0"; sha256="0fb670gxzl5aq6vmb5d2l04r0408gxrqs06k1a3b3pzkdbd7qxwm"; depends=[adductData ade4 AnnotationHub bootstrap data_table doSNOW dplyr DT ExperimentHub fastcluster foreach fpc mzR OrgMassSpecR pastecs pracma RcppEigen reshape2 rvest smoother zoo]; }; + adverSCarial = derive2 { name="adverSCarial"; version="1.0.0"; sha256="1ynd51ldy7xpnlxzchyi7pgh81wwz2vqvgn9810c2rwm5n6hqv0a"; depends=[DelayedArray gtools S4Vectors]; }; + affxparser = derive2 { name="affxparser"; version="1.74.0"; sha256="18qjdsgkmdhwv2c4sbixp7fn69sbjdipn363jnms95dksdj2xvr9"; depends=[]; }; + affy = derive2 { name="affy"; version="1.80.0"; sha256="0lsvcv7nprmsh62d0r2v44a5n915crvv1cbj9ba6fdggj7wp8zyk"; depends=[affyio Biobase BiocGenerics BiocManager preprocessCore zlibbioc]; }; + affyContam = derive2 { name="affyContam"; version="1.60.0"; sha256="1jxp4qacclfl07ig8dfwy5gpnsqrfqnjbci1a7znc7acqg0kv0zv"; depends=[affy affydata Biobase]; }; + affyILM = derive2 { name="affyILM"; version="1.54.0"; sha256="1sbgc787gvcnpjhm0hv80rsms679wlvphq2ch7s28zdlaa2vz7sv"; depends=[affxparser affy Biobase gcrma]; }; + affyPLM = derive2 { name="affyPLM"; version="1.78.0"; sha256="0l7rfwj1bdkk9vd5j0zby2ijpapmd5k0s6l84zy4ld47vabxyaa6"; depends=[affy Biobase BiocGenerics gcrma preprocessCore zlibbioc]; }; + affycomp = derive2 { name="affycomp"; version="1.78.0"; sha256="0818mgwny9hznw7lawrvmk11nwy0wxgjnlkf083vv3js4aq31gfp"; depends=[Biobase]; }; + affycoretools = derive2 { name="affycoretools"; version="1.74.0"; sha256="0bgv8a7hf8ns472zfryf255zqdikjv08np6k6hkpvyivad25vpwy"; depends=[affy AnnotationDbi Biobase BiocGenerics DBI edgeR gcrma ggplot2 Glimma GOstats gplots hwriter lattice limma oligoClasses ReportingTools RSQLite S4Vectors xtable]; }; + affyio = derive2 { name="affyio"; version="1.72.0"; sha256="01shv7936cb5yynxkdssczl752ayv2rx4qkrkddqhi5smksw13z9"; depends=[zlibbioc]; }; + affylmGUI = derive2 { name="affylmGUI"; version="1.76.0"; sha256="1431zmh9van9605lh0i96as48zih17s3cfhjw94v37rswfq09fkg"; depends=[affy affyio affyPLM AnnotationDbi BiocGenerics BiocManager gcrma limma R2HTML tkrplot xtable]; }; + aggregateBioVar = derive2 { name="aggregateBioVar"; version="1.12.0"; sha256="1i04hhncz9lhjp730gyknd8v7zakz1whc2a5pw3pn37h8k9mq5la"; depends=[Matrix rlang S4Vectors SingleCellExperiment SummarizedExperiment tibble]; }; + agilp = derive2 { name="agilp"; version="3.34.0"; sha256="0xbbcmnbnj7y3a1wndv6zhqhrwdpdj6207wh4n0qz794akciw84a"; depends=[]; }; + airpart = derive2 { name="airpart"; version="1.10.0"; sha256="1bdlg078nlpibbn3y1cbkglhlm440crx3alzhv9k0psv6arg2kqb"; depends=[apeglm clue ComplexHeatmap dplyr dynamicTreeCut emdbook forestplot ggplot2 lpSolve matrixStats mclust pbapply plyr RColorBrewer rlang S4Vectors scater SingleCellExperiment smurf SummarizedExperiment]; }; + alabaster = derive2 { name="alabaster"; version="1.2.0"; sha256="0l40hl5jwsyxnkqbzsmc8k8bvyi88rfhaiaj74aba04jqj4ga23d"; depends=[alabaster_base alabaster_bumpy alabaster_mae alabaster_matrix alabaster_ranges alabaster_sce alabaster_se alabaster_spatial alabaster_string alabaster_vcf]; }; + alabaster_base = derive2 { name="alabaster.base"; version="1.2.1"; sha256="1vpzc7h8589v49jyjgca2wyb1q548xfqnslvblmvamv28z3x2053"; depends=[alabaster_schemas jsonlite jsonvalidate Rcpp rhdf5 Rhdf5lib S4Vectors]; }; + alabaster_bumpy = derive2 { name="alabaster.bumpy"; version="1.2.0"; sha256="0z95qbg1nl5zq5wbq351mn5i3vh0ilr9g330cqc2j1ng9rjhr5cf"; depends=[alabaster_base BiocGenerics BumpyMatrix IRanges Matrix S4Vectors]; }; + alabaster_files = derive2 { name="alabaster.files"; version="1.0.0"; sha256="104ar597n91nhlvcvx0pl4wrymlnflvg76gfj6kjgy55q6v53i2j"; depends=[alabaster_base BiocGenerics Biostrings Rsamtools rtracklayer S4Vectors]; }; + alabaster_mae = derive2 { name="alabaster.mae"; version="1.2.0"; sha256="1ag8g2076gzhzf8iqjszq8r4jirzqsx2hf2bkdg5x30q5g03d4ii"; depends=[alabaster_base alabaster_se MultiAssayExperiment S4Vectors]; }; + alabaster_matrix = derive2 { name="alabaster.matrix"; version="1.2.0"; sha256="0ghgz4vys64y4z3i8bcnbz3mkwig0mhh2zf5ig59xvqn6k0xbvx5"; depends=[alabaster_base BiocGenerics DelayedArray HDF5Array Matrix rhdf5 S4Vectors SparseArray]; }; + alabaster_ranges = derive2 { name="alabaster.ranges"; version="1.2.0"; sha256="0p66n4sarzgr5pl9qhy9rjycb4s1xcigj6b1hk0fwqvmkpgfs53d"; depends=[alabaster_base BiocGenerics GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + alabaster_sce = derive2 { name="alabaster.sce"; version="1.2.0"; sha256="1gk4iy7f9kvn0dsl8mkwrjd40yrjmy806yfjsmliih6s3vgmwcvz"; depends=[alabaster_base alabaster_se SingleCellExperiment]; }; + alabaster_schemas = derive2 { name="alabaster.schemas"; version="1.2.0"; sha256="0swpd4jxf75g3p4yxscb0f3q74qm1sy3jjr5y55wqkb5c22lmmy1"; depends=[]; }; + alabaster_se = derive2 { name="alabaster.se"; version="1.2.0"; sha256="14rvdyd4b1ck303n18nfsvrxmjgpikhrj308gmn3g7158q8zfdwx"; depends=[alabaster_base alabaster_matrix alabaster_ranges BiocGenerics GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; + alabaster_spatial = derive2 { name="alabaster.spatial"; version="1.2.0"; sha256="1jdhiqypsagzpa669l6sm7y1hpz6i6mjck47yvv3f7xja3pwz66x"; depends=[alabaster_base alabaster_sce jsonlite S4Vectors SpatialExperiment SummarizedExperiment]; }; + alabaster_string = derive2 { name="alabaster.string"; version="1.2.0"; sha256="1gppm56mzf1by8gs37aabd03hamyghlg2vv3z95r4alb515rfgmm"; depends=[alabaster_base Biostrings]; }; + alabaster_vcf = derive2 { name="alabaster.vcf"; version="1.2.0"; sha256="0xzwcn112bp3mz8g1wmnkklsjm4p2hs237mgv9vxfsb6022njci9"; depends=[alabaster_base alabaster_se alabaster_string Rsamtools S4Vectors VariantAnnotation]; }; + alevinQC = derive2 { name="alevinQC"; version="1.18.0"; sha256="0lhbh9xgkbrad9fqvxl4c6y0f2kgibn6sinp8znysk5m9z0ngpwp"; depends=[cowplot dplyr DT GGally ggplot2 Rcpp rjson rlang rmarkdown shiny shinydashboard tximport]; }; + altcdfenvs = derive2 { name="altcdfenvs"; version="2.64.0"; sha256="17kgiqa5dbfp74jrm565wlx9sj4ydbds2y8ahs7dikvdvm725qsn"; depends=[affy Biobase BiocGenerics Biostrings hypergraph makecdfenv S4Vectors]; }; + amplican = derive2 { name="amplican"; version="1.24.0"; sha256="0xsw6226yyyl5zgmcyfim6dxj04zrpzbd1288l0hysq1s3b1yslw"; depends=[BiocGenerics BiocParallel Biostrings cluster data_table dplyr GenomeInfoDb GenomicRanges ggplot2 ggthemes gridExtra gtable IRanges knitr Matrix matrixStats Rcpp rmarkdown S4Vectors ShortRead stringr waffle]; }; + annaffy = derive2 { name="annaffy"; version="1.74.0"; sha256="1mdv0x9lnr0bm96h5f9104nqg2j6cjqvp5prrxx10j0d6464vmkw"; depends=[AnnotationDbi Biobase BiocManager DBI GO_db]; }; + annmap = derive2 { name="annmap"; version="1.44.0"; sha256="1gf0qdhj4ijgb6b67fh94zx084k5r87la3d7vc0qxs413rvr4mj8"; depends=[Biobase BiocGenerics DBI digest genefilter GenomicRanges IRanges lattice RMySQL Rsamtools]; }; + annotate = derive2 { name="annotate"; version="1.80.0"; sha256="10mdlbgbvdj967bih6wpvxmy91r10p8frhgcwv8mhv4g94ardasd"; depends=[AnnotationDbi Biobase BiocGenerics DBI httr XML xtable]; }; + annotationTools = derive2 { name="annotationTools"; version="1.76.0"; sha256="0g086rj06k3wac24zx66dw1yc1bzv25bmlbjbpcpgdcmyjb1i8sf"; depends=[Biobase]; }; + annotatr = derive2 { name="annotatr"; version="1.28.0"; sha256="16nkxnbsmr0y6km794x2iwbkyrkf0svg6ln3qkqnw0a47a3cbm65"; depends=[AnnotationDbi AnnotationHub dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges readr regioneR reshape2 rtracklayer S4Vectors]; }; + anota = derive2 { name="anota"; version="1.50.0"; sha256="1b1r7jwilwvl89fw3rqascyhy8wnm8y81lnx85pwjk55ld56jlb1"; depends=[multtest qvalue]; }; + anota2seq = derive2 { name="anota2seq"; version="1.24.0"; sha256="0kyxwhj5vq5z4v3x3hfb9ks3h37axqskyj9rzyj2bzsy2yk9hajn"; depends=[DESeq2 edgeR limma multtest qvalue RColorBrewer SummarizedExperiment]; }; + antiProfiles = derive2 { name="antiProfiles"; version="1.42.0"; sha256="14lzyq08gnm9r99xwaqh50sz0dwzhmiyyylkg239dlbw80zmv404"; depends=[locfit matrixStats]; }; + apComplex = derive2 { name="apComplex"; version="2.68.0"; sha256="1y3c3358y7ynn5lj2gcy9ll2gxnnlv689pj0bgr2gsnhbss1kw1r"; depends=[graph org_Sc_sgd_db RBGL Rgraphviz]; }; + apeglm = derive2 { name="apeglm"; version="1.24.0"; sha256="0cj9yzmh9w3fk3rxmk2k5j55r42mmz9znszmr4l160mr23alkzx4"; depends=[emdbook GenomicRanges Rcpp RcppEigen RcppNumerical SummarizedExperiment]; }; + appreci8R = derive2 { name="appreci8R"; version="1.20.1"; sha256="0m0gr4v4bwbafdmi5v1x0x2v0ax5cp60jy2cj586ws5z82d0dgl4"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 COSMIC_67 DT GenomicFeatures GenomicRanges GenomicScores Homo_sapiens IRanges MafDb_1Kgenomes_phase3_hs37d5 MafDb_ExAC_r1_0_hs37d5 MafDb_gnomADex_r2_1_hs37d5 openxlsx PolyPhen_Hsapiens_dbSNP131 rentrez Rsamtools S4Vectors seqinr shiny shinyjs SIFT_Hsapiens_dbSNP137 SNPlocs_Hsapiens_dbSNP144_GRCh37 stringr SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation XtraSNPlocs_Hsapiens_dbSNP144_GRCh37]; }; + aroma_light = derive2 { name="aroma.light"; version="3.32.0"; sha256="1i6rml0slfsf01a3sphyzrxp2z759psq5bv9cfy5dxx44fnav8b8"; depends=[matrixStats R_methodsS3 R_oo R_utils]; }; + arrayMvout = derive2 { name="arrayMvout"; version="1.60.0"; sha256="0z3ksx0yigan5aiq7vsdx78khlrcdxa4yd5b46rfn83gsrjbxzhz"; depends=[affy affyContam Biobase lumi mdqc parody]; }; + arrayQuality = derive2 { name="arrayQuality"; version="1.80.0"; sha256="1bm46zf5c1i7fd848bqajv3agl05b93xsvam7034033ypyx6bf1z"; depends=[gridBase hexbin limma marray RColorBrewer]; }; + arrayQualityMetrics = derive2 { name="arrayQualityMetrics"; version="3.58.0"; sha256="1k80ih7r3hf48r9rp9dl2wl8m17620dqr4fch49kdsq97hm5q5dm"; depends=[affy affyPLM beadarray Biobase genefilter gridSVG Hmisc hwriter lattice latticeExtra limma RColorBrewer setRNG svglite vsn XML]; }; + artMS = derive2 { name="artMS"; version="1.20.0"; sha256="19zd0p37pqk01ns2krjj80mz2c07b8q5qbcdi8czd0vvwkp1cxq7"; depends=[AnnotationDbi bit64 circlize cluster corrplot data_table dplyr getopt ggdendro ggplot2 ggrepel gplots limma MSstats openxlsx org_Hs_eg_db pheatmap plotly plyr RColorBrewer scales seqinr stringr tidyr UpSetR VennDiagram yaml]; }; + atSNP = derive2 { name="atSNP"; version="1.18.0"; sha256="1nksx6al1cr6apknvrabi3gdbr7m61ms81nmkq4qykx5aysmp8mv"; depends=[BiocFileCache BiocParallel BSgenome data_table ggplot2 lifecycle motifStack rappdirs Rcpp testthat]; }; + atena = derive2 { name="atena"; version="1.8.0"; sha256="1qfgy76d65hbx32fw1yf20n1vavylcafb9fgqqp02r455vk3xzng"; depends=[AnnotationHub BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges Matrix matrixStats Rsamtools S4Vectors sparseMatrixStats SQUAREM SummarizedExperiment]; }; + attract = derive2 { name="attract"; version="1.54.0"; sha256="0lk8gfbccrxly7gn629497sxz0mj3m9wcwdahqv1m7l6fjnf5563"; depends=[AnnotationDbi Biobase cluster GOstats KEGGREST limma org_Hs_eg_db reactome_db]; }; + autonomics = derive2 { name="autonomics"; version="1.10.2"; sha256="1chgsckv6vvx8sxfbd7ds0pm67w2yaijzf68j8zm7pplz44kr9m9"; depends=[abind assertive_base assertive_files assertive_numbers assertive_sets BiocFileCache BiocGenerics bit64 colorspace data_table dplyr edgeR ggplot2 ggrepel gridExtra limma magrittr matrixStats MultiAssayExperiment pcaMethods R_utils rappdirs readxl rlang S4Vectors scales stringi SummarizedExperiment tidyr]; }; + awst = derive2 { name="awst"; version="1.10.0"; sha256="0hry7ynv69hqbwyhlsilf1f9w8yadidbn2ckm5dx9mnb5ihgkyvj"; depends=[SummarizedExperiment]; }; + bacon = derive2 { name="bacon"; version="1.30.0"; sha256="065b4xf5i1bx08494nm3r497bs47s5vf99l2g37nlpvxf7pypvrz"; depends=[BiocParallel ellipse ggplot2]; }; + ballgown = derive2 { name="ballgown"; version="2.34.0"; sha256="1r3qz6y97zhp7swcv2ls1h6cz0l66y5ap00wx9wlqxv14sljd135"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges limma RColorBrewer rtracklayer S4Vectors sva]; }; + bambu = derive2 { name="bambu"; version="3.4.0"; sha256="02pcab8jfwlx4y00yky63anba61bb1h884m0f6ajvasfpgl30w6i"; depends=[BiocGenerics BiocParallel BSgenome data_table dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rcpp RcppArmadillo Rsamtools S4Vectors SummarizedExperiment tidyr xgboost]; }; + bamsignals = derive2 { name="bamsignals"; version="1.34.0"; sha256="1qv2gydn8awrkbhdrgxm8zxpicphqc29rwzkj3vyaa9glmnx2y34"; depends=[BiocGenerics GenomicRanges IRanges Rcpp Rhtslib zlibbioc]; }; + bandle = derive2 { name="bandle"; version="1.6.0"; sha256="1hszmd73axh1mg3zgj7i11fz03cg2v5xjaf7kx5npbdgi3yd4b2b"; depends=[BH Biobase BiocParallel BiocStyle circlize dplyr ggalluvial ggplot2 ggrepel knitr lbfgs MSnbase plyr pRoloc pRolocdata Rcpp RcppArmadillo rlang robustbase S4Vectors tidyr]; }; + banocc = derive2 { name="banocc"; version="1.26.0"; sha256="0y6mizkbx3s2x6465g53q87q0sixxrxhjvjmvwiilhirxf4x7hgp"; depends=[coda mvtnorm rstan stringr]; }; + barcodetrackR = derive2 { name="barcodetrackR"; version="1.10.0"; sha256="1w5p6dqagf3g27ymqsxdim0qhnwm11rrs3nnpp4mj8jcxm8wjsh9"; depends=[circlize cowplot dplyr ggdendro ggplot2 ggridges magrittr plyr proxy RColorBrewer rlang S4Vectors scales shiny SummarizedExperiment tibble tidyr vegan viridis]; }; + basecallQC = derive2 { name="basecallQC"; version="1.26.0"; sha256="0ak5rbrzbazz48x75alihzmlgll46l2hnyh11pf5n7gvws6skrps"; depends=[data_table dplyr DT ggplot2 knitr lazyeval magrittr prettydoc raster rmarkdown ShortRead stringr tidyr XML yaml]; }; + basilisk = derive2 { name="basilisk"; version="1.14.1"; sha256="1v67z53y2nnss6l6nk7f557kn0d5syg9n0zdgddpsz26rwdmp8ai"; depends=[basilisk_utils dir_expiry reticulate]; }; + basilisk_utils = derive2 { name="basilisk.utils"; version="1.14.1"; sha256="19m4h90rkk6mizllkih2xmxag8nb45qss3vydkkyj62s5zjhfh27"; depends=[dir_expiry]; }; + batchelor = derive2 { name="batchelor"; version="1.18.1"; sha256="1z4ddkdd3mzqg0c6l94qmrdwrm7427k5xiwzgkzx43gh1j4911d5"; depends=[beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats igraph Matrix Rcpp ResidualMatrix S4Vectors ScaledMatrix scuttle SingleCellExperiment SummarizedExperiment]; }; + bayNorm = derive2 { name="bayNorm"; version="1.20.0"; sha256="01lv4w1x43x3f9sdrqikhsr1gdvkgqzrgcd9wnjj76qsljn57ifq"; depends=[BB BiocParallel doSNOW fitdistrplus foreach iterators locfit MASS Matrix Rcpp RcppArmadillo RcppProgress SingleCellExperiment SummarizedExperiment]; }; + baySeq = derive2 { name="baySeq"; version="2.36.0"; sha256="1b5vvzl0kkm6kb03vr6m6sdlr3azpc24933a7ayxkiffmf2wbi0g"; depends=[abind edgeR GenomicRanges]; }; + bcSeq = derive2 { name="bcSeq"; version="1.24.0"; sha256="050rh9ina8wlkk6d66l2y81vblgyldsyy9fqxk7kpnzmjani919k"; depends=[Biostrings Matrix Rcpp]; }; + beachmat = derive2 { name="beachmat"; version="2.18.0"; sha256="1yixv6vs1q2k4vx17bq4nar3g4v2076i5dq77gh63mlka46qr3g2"; depends=[BiocGenerics DelayedArray Matrix Rcpp SparseArray]; }; + beachmat_hdf5 = derive2 { name="beachmat.hdf5"; version="1.0.0"; sha256="1ihx1c7j1k52c45f6q17iwvrnym3fdx93lhxk73la6ig6q6y0p85"; depends=[beachmat DelayedArray HDF5Array Rcpp Rhdf5lib]; }; + beadarray = derive2 { name="beadarray"; version="2.52.0"; sha256="0qwka7549mlv2x80bjrzdsy4a6h35yxrhj2cxss9aigwsbjb7sjr"; depends=[AnnotationDbi BeadDataPackR Biobase BiocGenerics GenomicRanges ggplot2 hexbin illuminaio IRanges limma reshape2]; }; + beadarraySNP = derive2 { name="beadarraySNP"; version="1.68.0"; sha256="1vrizh7fpzv1w2gki0qxhphrfj1jj6m6bjsjsbw0b4n4invybzps"; depends=[Biobase quantsmooth]; }; + beer = derive2 { name="beer"; version="1.6.0"; sha256="1dapyrp1rdy2smi6v7cvj1wv5mhrkvv3sz1aqpim8vf18f9132py"; depends=[BiocParallel cli edgeR PhIPData progressr rjags SummarizedExperiment]; }; + benchdamic = derive2 { name="benchdamic"; version="1.8.1"; sha256="1prrm5jcv6i64hhqcqj3m6kblv9l0adkssc235r5h4fgk2jq9zyf"; depends=[ALDEx2 ANCOMBC BiocParallel cowplot dearseq DESeq2 edgeR ggdendro ggplot2 ggridges GUniFrac limma lme4 Maaslin2 MAST metagenomeSeq MGLM MicrobiomeStat mixOmics NOISeq phyloseq plyr RColorBrewer reshape2 Seurat SummarizedExperiment tidytext TreeSummarizedExperiment zinbwave]; }; + bgx = derive2 { name="bgx"; version="1.68.0"; sha256="0v85i0lwmxq5yq9ygfzljgy8fsflqq1p53rq8aasnndd6gsm8ld2"; depends=[affy Biobase gcrma Rcpp]; }; + bigmelon = derive2 { name="bigmelon"; version="1.28.0"; sha256="1j80f7k39p23s6fym3nia73g8d1v44hdiv73igcq6fnsllxg40hr"; depends=[Biobase BiocGenerics gdsfmt GEOquery illuminaio methylumi minfi wateRmelon]; }; + bioCancer = derive2 { name="bioCancer"; version="1.30.0"; sha256="0rhv3k3m8nn6dx91895nwmwg0x7igyrh3iz71ds6i3zi0crlq9zm"; depends=[AlgDesign AnnotationDbi Biobase clusterProfiler DiagrammeR DOSE dplyr DT geNetClassifier GO_db htmlwidgets httr org_Bt_eg_db org_Hs_eg_db plyr r_import R_methodsS3 R_oo radiant_data reactome_db ReactomePA shiny shinythemes tibble visNetwork XML]; }; + bioDist = derive2 { name="bioDist"; version="1.74.0"; sha256="0ngpysb89wag4wvcq83ddjxhy1zhl32b2fy2fg5laa4g8xfrqaxz"; depends=[Biobase KernSmooth]; }; + bioassayR = derive2 { name="bioassayR"; version="1.40.0"; sha256="1mm1nzdz9cl8mf33yiyaspqkx4sbqhhs6m9jfgl42fhscrhaxfsi"; depends=[BiocGenerics ChemmineR DBI Matrix rjson RSQLite XML]; }; + biobroom = derive2 { name="biobroom"; version="1.34.0"; sha256="1ivclipy2igf8ax7f0pqrcqflcm7h0a8ny6nfa0200vp99an8ymf"; depends=[Biobase broom dplyr tidyr]; }; + biobtreeR = derive2 { name="biobtreeR"; version="1.14.0"; sha256="18p5r67ppkw8wxxkrj76q68ljlhdbhar5hc89ffdsgr3zzdyk875"; depends=[httpuv httr jsonlite stringi]; }; + biocGraph = derive2 { name="biocGraph"; version="1.64.0"; sha256="1yy0bwvfa5b531jvmbiwrd4xg8cdvrgwr8l6bxasrh6yrbv8drml"; depends=[BiocGenerics geneplotter graph Rgraphviz]; }; + biocViews = derive2 { name="biocViews"; version="1.70.0"; sha256="0fpka47shrxcbc1k057f5zv79406daic0y34v8p5lsvxbgzh0m8b"; depends=[Biobase BiocManager graph RBGL RCurl RUnit XML]; }; + biocthis = derive2 { name="biocthis"; version="1.12.0"; sha256="0lxcsw70ib8wvkp3ii1l8vd4g2ddhj6g0x22dwcmwacr2myk3bg8"; depends=[BiocManager fs glue rlang styler usethis]; }; + biodb = derive2 { name="biodb"; version="1.10.0"; sha256="18w062s0wwdisl6a9a79in6h4052x3janinc5isip0x6p9g9d9bk"; depends=[BiocFileCache chk git2r jsonlite lgr lifecycle openssl plyr progress R6 rappdirs Rcpp RCurl RSQLite stringr testthat withr XML yaml]; }; + biodbChebi = derive2 { name="biodbChebi"; version="1.8.0"; sha256="0ic7dpjl0fxsqx51x8zjmf46ganx2imr64n93s79admwrcwbc33b"; depends=[biodb R6]; }; + biodbExpasy = derive2 { name="biodbExpasy"; version="1.6.0"; sha256="1y8f1iy3ircwxcwc6aymmi0q8yx91mh1c17y7drxp2b3pcbhgly1"; depends=[biodb chk R6 stringr]; }; + biodbHmdb = derive2 { name="biodbHmdb"; version="1.8.0"; sha256="1kymxi6kzv13gkvvhlfz8fkgac4ww05svxvy4zw6clwnh9gv3lwy"; depends=[biodb R6 Rcpp testthat zip]; }; + biodbKegg = derive2 { name="biodbKegg"; version="1.8.0"; sha256="07hvk0sab9m5df1y7v5ndkn7m4l24w6cy4bvyvx3445c1bljqwmf"; depends=[biodb chk lifecycle R6]; }; + biodbLipidmaps = derive2 { name="biodbLipidmaps"; version="1.8.0"; sha256="10zz8wri5pmz0329bygpg0a20yphsx04gwhv41hy5x0z86sx55xs"; depends=[biodb lifecycle R6]; }; + biodbMirbase = derive2 { name="biodbMirbase"; version="1.5.0"; sha256="17clip9l8as9pz390bqgj07jxp1rijis2f5hj53s6vqaqmiyz4il"; depends=[biodb chk R6 stringr]; }; + biodbNcbi = derive2 { name="biodbNcbi"; version="1.6.0"; sha256="1qkcpk81j6wzqvfa78sv01a51sgcgyfjdkwm4izgkb5qblwy17c5"; depends=[biodb chk R6 XML]; }; + biodbNci = derive2 { name="biodbNci"; version="1.6.0"; sha256="1djdfw3xks6wr20igrnj9ph8awrdnyxyiac3377wn3nc4sq87rax"; depends=[biodb chk R6 Rcpp testthat]; }; + biodbUniprot = derive2 { name="biodbUniprot"; version="1.8.0"; sha256="19jq0s3s2hpwnwxws5zx9d569djfrqf5npsw49fq1v9zx4g903g1"; depends=[biodb R6]; }; + biomaRt = derive2 { name="biomaRt"; version="2.58.0"; sha256="1m6c6m9z0d1k6s2q0ikd78ahcq72gzqnhlprdn0xvkjxrgh1i2lf"; depends=[AnnotationDbi BiocFileCache digest httr progress rappdirs stringr XML xml2]; }; + biomformat = derive2 { name="biomformat"; version="1.30.0"; sha256="1ccnrz8rkg533kil3sc8wnjqsmiyrpqqmk7av7ls01avglcjdjq1"; depends=[jsonlite Matrix plyr rhdf5]; }; + biomvRCNS = derive2 { name="biomvRCNS"; version="1.42.2"; sha256="1imni8lpjzf53w2q34ql0j9rwq6drbzxvs0nhzf6s172iqym2hq3"; depends=[GenomicRanges Gviz IRanges mvtnorm]; }; + biosigner = derive2 { name="biosigner"; version="1.30.0"; sha256="1j3wkqvha6pzd6d3wm2q4lihn8p9ycw0wmddjqpnqvglb1x7c0f8"; depends=[Biobase e1071 MultiAssayExperiment MultiDataSet randomForest ropls SummarizedExperiment]; }; + biotmle = derive2 { name="biotmle"; version="1.26.0"; sha256="0h796sxv7fvwx9m8ikamf3bvaac7rimp33lv1j3ngsjifigdkvfy"; depends=[assertthat BiocGenerics BiocParallel dplyr drtmle ggplot2 ggsci limma S4Vectors SummarizedExperiment superheat tibble]; }; + biovizBase = derive2 { name="biovizBase"; version="1.50.0"; sha256="01hli49aq1fjjgpk465znq1ki0qi7nxg71pqg18fz6nblg3ny9z5"; depends=[AnnotationDbi AnnotationFilter BiocGenerics Biostrings dichromat ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Hmisc IRanges RColorBrewer rlang Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; + biscuiteer = derive2 { name="biscuiteer"; version="1.16.0"; sha256="1q90p14qj5plz6cbvwxq875y29in6jg7adyni5wd33pf9i4gsxzi"; depends=[Biobase BiocGenerics BiocParallel biscuiteerData bsseq data_table DelayedMatrixStats dmrseq GenomeInfoDb GenomicRanges gtools HDF5Array Homo_sapiens impute IRanges Matrix matrixStats Mus_musculus QDNAseq qualV R_utils readr Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; + blacksheepr = derive2 { name="blacksheepr"; version="1.16.0"; sha256="10a2nwks2kmdx8xpk1zbrmxvi4wsmdsyxkg4a45s6n67213qx4ir"; depends=[circlize ComplexHeatmap pasilla RColorBrewer SummarizedExperiment viridis]; }; + blima = derive2 { name="blima"; version="1.36.0"; sha256="15p2792sf1mh11vna5807cw9kki2v5bc57w8lchgkkv2fy7a5l3i"; depends=[beadarray Biobase BiocGenerics Rcpp]; }; + bluster = derive2 { name="bluster"; version="1.12.0"; sha256="16zkv567d39258syhfb215y04sq3pnfjh9pgbp5z85hcfpz4qmhc"; depends=[BiocNeighbors BiocParallel cluster igraph Matrix Rcpp S4Vectors]; }; + bnbc = derive2 { name="bnbc"; version="1.23.0"; sha256="1fgls5a2727c7ssj9f6r56s21j171s6ipf7k300b2780whagsdb7"; depends=[BiocGenerics data_table EBImage GenomeInfoDb GenomicRanges IRanges matrixStats preprocessCore Rcpp rhdf5 S4Vectors SummarizedExperiment sva]; }; + bnem = derive2 { name="bnem"; version="1.10.0"; sha256="0wl5r6bxd315n1kdh1cjqvrmnxbvbjriq6n6djk43bvj5b7i8c5s"; depends=[affy binom Biobase CellNOptR cluster epiNEM flexclust graph limma matrixStats mnem RColorBrewer Rgraphviz rmarkdown snowfall sva vsn]; }; + brainflowprobes = derive2 { name="brainflowprobes"; version="1.16.0"; sha256="06gga72ns7h9c6mdbvbj8afpkyizg7maazriilvaq433h6s1pgqb"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 bumphunter cowplot derfinder derfinderPlot GenomicRanges GenomicState ggplot2 RColorBrewer]; }; + branchpointer = derive2 { name="branchpointer"; version="1.28.0"; sha256="104v99nnhkyfmnv5dalz4gimbx0z9xv8l9bwq1v8sf8m1fdlqz3k"; depends=[biomaRt Biostrings BSgenome_Hsapiens_UCSC_hg38 caret cowplot data_table gbm GenomeInfoDb GenomicRanges ggplot2 IRanges kernlab plyr rtracklayer S4Vectors stringr]; }; + breakpointR = derive2 { name="breakpointR"; version="1.20.0"; sha256="1jhgimybc2ib201k6vs5nfyi1whpkkzn7nj562yhz74208fx793a"; depends=[BiocGenerics breakpointRdata cowplot doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges Rsamtools S4Vectors]; }; + brendaDb = derive2 { name="brendaDb"; version="1.16.0"; sha256="1hsd66wz3frg4z423358mxj4d7nmhmsyjlqkh5q4gdsasr4wx88y"; depends=[BiocFileCache BiocParallel crayon dplyr magrittr purrr rappdirs Rcpp rlang stringr tibble tidyr]; }; + bsseq = derive2 { name="bsseq"; version="1.38.0"; sha256="0afpzr52mf2ab7gr9swdf6609787ymw8s8wksis0d4ap0y0wdgg0"; depends=[beachmat Biobase BiocGenerics BiocParallel Biostrings BSgenome data_table DelayedArray DelayedMatrixStats GenomeInfoDb GenomicRanges gtools HDF5Array IRanges limma locfit permute R_utils Rcpp rhdf5 S4Vectors scales SummarizedExperiment]; }; + bugsigdbr = derive2 { name="bugsigdbr"; version="1.8.1"; sha256="1xkhg1xrik2arwaqc4375f6h3hjqbsz4siblh198xjvqbmshg71q"; depends=[BiocFileCache]; }; + bumphunter = derive2 { name="bumphunter"; version="1.44.0"; sha256="0vnm0m9abf8478f7lair58vw1v4mxj8sbmrxcpf8622ygf2na4qc"; depends=[AnnotationDbi BiocGenerics doRNG foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges iterators limma locfit matrixStats S4Vectors]; }; + cBioPortalData = derive2 { name="cBioPortalData"; version="2.14.0"; sha256="1l05zn5a3kqz6j1122kg83xngvd22zv66ng4dhh4y79ckq7l2rhf"; depends=[AnVIL BiocFileCache digest dplyr GenomeInfoDb GenomicRanges httr IRanges MultiAssayExperiment RaggedExperiment readr RTCGAToolbox S4Vectors SummarizedExperiment TCGAutils tibble tidyr]; }; + cTRAP = derive2 { name="cTRAP"; version="1.20.0"; sha256="0f0qdm1kih9vpz911ms23056vsg6ss9f6hkrvmw0sr1idcpzq92a"; depends=[AnnotationDbi AnnotationHub binr cowplot data_table dplyr DT fastmatch fgsea ggplot2 ggrepel highcharter htmltools httr limma pbapply purrr qs R_utils readxl reshape2 rhdf5 rlang scales shiny shinycssloaders tibble]; }; + cageminer = derive2 { name="cageminer"; version="1.8.0"; sha256="1bd13lwxwp8qj86bg3njcsryl2zz83xr8kmph189z6wypi606zyw"; depends=[BioNERO GenomeInfoDb GenomicRanges ggbio ggplot2 ggtext IRanges reshape2 rlang]; }; + calm = derive2 { name="calm"; version="1.16.0"; sha256="130288ihhf2grmpzrizhrhspq5y9m82f3yji6fhvrh2kbczjr7fv"; depends=[mgcv]; }; + canceR = derive2 { name="canceR"; version="1.36.0"; sha256="0lswys440vyzm3dkim5d88979fjyq0cxg9rr2z1xwl4nvrnz1lwb"; depends=[Biobase circlize Formula geNetClassifier GSEABase httr phenoTest plyr R_methodsS3 R_oo rpart RUnit survival tkrplot]; }; + cancerclass = derive2 { name="cancerclass"; version="1.46.0"; sha256="0v1js5nsgmz6sxl6nbp4hhx12z84xps9kh03xxp0rbhl9g9kjq8f"; depends=[binom Biobase]; }; + cardelino = derive2 { name="cardelino"; version="1.4.0"; sha256="0y4d3db01jwahz01hx3dswc4gg0x5k7325v4n1illgw3ddj2mvgn"; depends=[combinat GenomeInfoDb GenomicRanges ggplot2 ggtree Matrix matrixStats pheatmap S4Vectors snpStats VariantAnnotation vcfR]; }; + casper = derive2 { name="casper"; version="2.36.0"; sha256="0csh68x4qbhzsszlr2rb23q9a1mzsibqm9ljbglc5asy1m316601"; depends=[Biobase BiocGenerics coda EBarrays gaga GenomeInfoDb GenomicFeatures GenomicRanges gtools IRanges limma mgcv Rsamtools rtracklayer S4Vectors sqldf survival VGAM]; }; + categoryCompare = derive2 { name="categoryCompare"; version="1.46.0"; sha256="03daa0kqw4fwg8rv0l87qvw0324wa00jzp5hc8x4pqpw1flg2g84"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category colorspace GOstats graph GSEABase hwriter RCy3]; }; + cbaf = derive2 { name="cbaf"; version="1.24.0"; sha256="1z68iv8322b9xrqcnvjg1yapnwwsis3zbk48ax5br0avlrwgv6hi"; depends=[BiocFileCache cBioPortalData genefilter gplots openxlsx RColorBrewer]; }; + cbpManager = derive2 { name="cbpManager"; version="1.10.0"; sha256="1157gaqyrqsw31p34ylrr4j2hla2q5xyswv70zy80ij71ykwps7a"; depends=[basilisk dplyr DT htmltools jsonlite magrittr markdown plyr rapportools reticulate rintrojs rlang shiny shinyBS shinycssloaders shinydashboard vroom]; }; + ccImpute = derive2 { name="ccImpute"; version="1.4.0"; sha256="0v27y9i6872p11gwg4pq0xzdd66pk7wsc21ig8n12w7lq898nwhj"; depends=[BiocParallel matrixStats Rcpp RcppEigen SIMLR]; }; + ccfindR = derive2 { name="ccfindR"; version="1.22.0"; sha256="1qsgpsrxhacg3sm9afi2x0d0aadvwibzjh40qkwgmq3smfv9an01"; depends=[ape gtools irlba Matrix RColorBrewer Rcpp RcppEigen Rdpack Rmpi Rtsne S4Vectors SingleCellExperiment SummarizedExperiment]; }; + ccmap = derive2 { name="ccmap"; version="1.28.0"; sha256="0fmb5d9mqwh227sw3skksfqx7cp6bfwnslhffh8v9byjz99vkcli"; depends=[AnnotationDbi BiocManager ccdata data_table doParallel foreach lsa xgboost]; }; + ceRNAnetsim = derive2 { name="ceRNAnetsim"; version="1.14.1"; sha256="13ng9h1q30qm62n2q4yh8lghxjyv34xz5pgwi1bai7ib4i5b7wks"; depends=[dplyr furrr future ggplot2 ggraph igraph purrr rlang tibble tidygraph tidyr]; }; + celaref = derive2 { name="celaref"; version="1.20.0"; sha256="1wjyh98y4n24gaw9g9f988d51239imqf2jh7bycyl1yi8r57r8ds"; depends=[BiocGenerics DelayedArray dplyr ggplot2 magrittr MAST Matrix readr rlang S4Vectors SummarizedExperiment tibble]; }; + celda = derive2 { name="celda"; version="1.18.1"; sha256="1wvqxp9fwd0jfjwnhjzmmw2yzgz2gzlm2hnij6xylz41s7al6gdp"; depends=[circlize ComplexHeatmap data_table dbscan DelayedArray digest doParallel enrichR foreach ggplot2 ggrepel gridExtra gtable Matrix matrixStats MCMCprecision plyr RColorBrewer Rcpp RcppEigen reshape2 Rtsne S4Vectors scales scater scran SingleCellExperiment stringr SummarizedExperiment uwot withr]; }; + cellHTS2 = derive2 { name="cellHTS2"; version="2.66.0"; sha256="1cw9k0p67fjcjaykfa9s6fhp07mrliyyzhl9ac3874kvmi2qiavj"; depends=[Biobase BiocGenerics Category genefilter GSEABase hwriter locfit RColorBrewer splots vsn]; }; + cellbaseR = derive2 { name="cellbaseR"; version="1.26.0"; sha256="16jypif8cnx03m206n1am52avwmfdnbplygxlainn3wqxgm5gr9y"; depends=[BiocParallel data_table doParallel foreach httr jsonlite pbapply R_utils Rsamtools tidyr]; }; + cellity = derive2 { name="cellity"; version="1.30.0"; sha256="1wdc3f93cwgqrln39c8c2nyi77kh8qrzis4qb8bxldkhf0s6vlb5"; depends=[AnnotationDbi e1071 ggplot2 mvoutlier org_Hs_eg_db org_Mm_eg_db robustbase topGO]; }; + cellmigRation = derive2 { name="cellmigRation"; version="1.10.0"; sha256="0l7awcn1bjfp23f9si2f1wkyrla0zk9h8qsg8dx3jqd5wgdrivcm"; depends=[doParallel FactoMineR FME foreach Hmisc matrixStats reshape2 sp SpatialTools tiff vioplot]; }; + cellxgenedp = derive2 { name="cellxgenedp"; version="1.6.1"; sha256="0f9dzlw0mgv6chmxq348n91ylbscfqv4hx4q49bgpinsc3yp1vdj"; depends=[curl dplyr DT httr jsonlite rjsoncons shiny]; }; + censcyt = derive2 { name="censcyt"; version="1.10.0"; sha256="0wfxvppvk8zk6dmk57mgckkh37b56whfcykdgmjkyhzqkimwflj0"; depends=[BiocParallel broom_mixed diffcyt dirmult dplyr edgeR fitdistrplus lme4 magrittr MASS mice multcomp purrr rlang S4Vectors stringr SummarizedExperiment survival tibble tidyr]; }; + cfDNAPro = derive2 { name="cfDNAPro"; version="1.8.0"; sha256="0zqqchzv9izsdnca5i8df9ccs5wsfmqvcd2mfh8psq66fxmj9kzj"; depends=[BiocGenerics BSgenome_Hsapiens_NCBI_GRCh38 BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges magrittr plyranges quantmod rlang Rsamtools stringr tibble]; }; + cfTools = derive2 { name="cfTools"; version="1.2.0"; sha256="11nj6g2qxxr6s11432wsna3ma2k9dyp7w76iamj0z80wnbvmicfz"; depends=[basilisk BH cfToolsData GenomicRanges R_utils Rcpp]; }; + cfdnakit = derive2 { name="cfdnakit"; version="1.0.0"; sha256="0p74f274hk3w1y5rx06sdq36wddzd6wmhyla4l29fb87wmpfhidk"; depends=[Biobase dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr PSCBS QDNAseq rlang Rsamtools S4Vectors]; }; + cghMCR = derive2 { name="cghMCR"; version="1.60.0"; sha256="0isblsgxaj7751lm8fsq94nzp03yhwycfmdrarb6lz9kwk8b177r"; depends=[BiocGenerics CNTools DNAcopy limma]; }; + chihaya = derive2 { name="chihaya"; version="1.2.0"; sha256="0mg27phk4z8kdldjsi8c32p67i3dpbk332agljv33a89672z54zi"; depends=[DelayedArray HDF5Array Matrix Rcpp rhdf5 Rhdf5lib]; }; + chimeraviz = derive2 { name="chimeraviz"; version="1.28.0"; sha256="08w3dd1dlvkvdcgykh8hf95g405q6095cmyg6nhmml4rahaf08fz"; depends=[AnnotationDbi AnnotationFilter BiocStyle Biostrings checkmate data_table dplyr DT ensembldb GenomeInfoDb GenomicAlignments GenomicRanges graph gtools Gviz IRanges magick org_Hs_eg_db org_Mm_eg_db plyr RCircos RColorBrewer Rgraphviz rmarkdown Rsamtools S4Vectors]; }; + chipenrich = derive2 { name="chipenrich"; version="2.26.0"; sha256="11kmv963x88ngarcsxw6pc42nhwiy4147kjl14d9qn9zcpky40d3"; depends=[AnnotationDbi BiocGenerics chipenrich_data GenomeInfoDb GenomicRanges IRanges lattice latticeExtra MASS mgcv org_Dm_eg_db org_Dr_eg_db org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db plyr rms rtracklayer S4Vectors stringr]; }; + chipseq = derive2 { name="chipseq"; version="1.52.0"; sha256="1fw99xnll4jwdmp49jh59zxcbp3qs2850pjdg403sv4cg1bgfdyi"; depends=[BiocGenerics GenomicRanges IRanges lattice S4Vectors ShortRead]; }; + chopsticks = derive2 { name="chopsticks"; version="1.68.0"; sha256="02w8w28lwn5qxyiaf9aw850b46amw8413bbhy7nhfa1h17429q2z"; depends=[survival]; }; + chromDraw = derive2 { name="chromDraw"; version="2.32.0"; sha256="16697g01gn79jq5b42fcxmscwkfx2p90zxpzw0akfz7dxx4izp3f"; depends=[GenomicRanges Rcpp]; }; + chromPlot = derive2 { name="chromPlot"; version="1.30.0"; sha256="1xqqil19igqr5wymhmkh2m2iyj98k5x8k4k1s218rzx39yfamq7y"; depends=[biomaRt GenomicRanges]; }; + chromVAR = derive2 { name="chromVAR"; version="1.24.0"; sha256="1vy650625b9b2dgnkgh5h0kw5bkdvfin133091asf1nw4jgnn1vx"; depends=[BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicRanges ggplot2 IRanges Matrix miniUI nabor plotly RColorBrewer Rcpp RcppArmadillo Rsamtools Rtsne S4Vectors shiny SummarizedExperiment TFBSTools]; }; + chromstaR = derive2 { name="chromstaR"; version="1.28.0"; sha256="1yykcqxp8y7by4jgh6dfl25m0pnghj36qy21990n2sdfv1kpg2x6"; depends=[bamsignals BiocGenerics chromstaRData doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges mvtnorm reshape2 Rsamtools S4Vectors]; }; + cicero = derive2 { name="cicero"; version="1.20.0"; sha256="19vn31w74r45pq5m9pn5db1sz1qg757mghzzs933cdssnqf4m6y5"; depends=[assertthat Biobase BiocGenerics data_table dplyr FNN GenomicRanges ggplot2 glasso Gviz igraph IRanges Matrix monocle plyr reshape2 S4Vectors stringi stringr tibble tidyr VGAM]; }; + circRNAprofiler = derive2 { name="circRNAprofiler"; version="1.16.0"; sha256="098fbrszph5cnh4n9zjhj92sg1bi6h6k57wm2vlaqkq0nab63r63"; depends=[AnnotationHub Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 DESeq2 dplyr edgeR GenomeInfoDb GenomicRanges ggplot2 gwascat IRanges magrittr R_utils readr reshape2 rlang rtracklayer S4Vectors seqinr stringi stringr universalmotif]; }; + cisPath = derive2 { name="cisPath"; version="1.42.0"; sha256="00xnaravzyc8lh94iapyy9g5fc5w9yzf8bgz8cjxcy0js9996h8n"; depends=[]; }; + cleanUpdTSeq = derive2 { name="cleanUpdTSeq"; version="1.40.0"; sha256="0yhbzzx8i1pilrv970prjrnjfb38vwygyxqarli81v6rmn344ps9"; depends=[Biostrings BSgenome BSgenome_Drerio_UCSC_danRer7 e1071 GenomeInfoDb GenomicRanges IRanges S4Vectors seqinr stringr]; }; + cleaver = derive2 { name="cleaver"; version="1.40.0"; sha256="0r1a0rncxnrfmj81ghz3jhj3r2lyhilcr1c33z9igdlbgqh7whak"; depends=[Biostrings IRanges S4Vectors]; }; + clevRvis = derive2 { name="clevRvis"; version="1.2.0"; sha256="0p7m7hc21qmicm33g8wr8gdmh0b0fm87xa6srirvsmkbbblly35l"; depends=[colorspace colourpicker cowplot dplyr DT ggiraph ggnewscale ggplot2 ggraph htmlwidgets igraph magrittr patchwork purrr R_utils readr readxl shiny shinycssloaders shinydashboard shinyhelper shinyWidgets tibble]; }; + cliProfiler = derive2 { name="cliProfiler"; version="1.8.0"; sha256="0zv7y5cdv409cimc7n6v6h8i2pgy2pmr364vvlv0pgvpld3239yl"; depends=[Biostrings BSgenome dplyr GenomicRanges ggplot2 rtracklayer S4Vectors]; }; + clippda = derive2 { name="clippda"; version="1.52.0"; sha256="11pxmsspiyvych0qzvmjkcvk6pqbh2pf0pvaghcdbs5480gn9awg"; depends=[Biobase lattice limma rgl scatterplot3d statmod]; }; + clipper = derive2 { name="clipper"; version="1.42.0"; sha256="05hhvy0sv7l69laj4ah5vg56inzf2qb4lfc7hd71ifsw7cwyx8ql"; depends=[Biobase corpcor graph gRbase igraph KEGGgraph Matrix qpgraph Rcpp]; }; + cliqueMS = derive2 { name="cliqueMS"; version="1.16.0"; sha256="1829i6vqplqyvibb7x6ahb7xk0z2s8amivjldnvr17d7hpggmqma"; depends=[BH igraph matrixStats MSnbase Rcpp RcppArmadillo xcms]; }; + clst = derive2 { name="clst"; version="1.50.0"; sha256="0lbjjkcsrz6h2akr1022v0mv1ryywba57hg84yzdzmv389r0jj42"; depends=[lattice ROC]; }; + clstutils = derive2 { name="clstutils"; version="1.50.0"; sha256="0wl1s23hmj7v3247lry9kp124kajn69b0dm3qm9fr7imlyadn666"; depends=[ape clst lattice rjson RSQLite]; }; + clustComp = derive2 { name="clustComp"; version="1.30.0"; sha256="1jwx8k18qgyyadda89crc66b9sjq7yr2f0ym9p5s5cpc48dlyg55"; depends=[sm]; }; + clusterExperiment = derive2 { name="clusterExperiment"; version="2.22.0"; sha256="1qnxrdpp75m342q4chwaig413l52giz1h7nd4p9y4b472dqx9hh4"; depends=[ape BiocGenerics BiocSingular cluster DelayedArray edgeR HDF5Array howmany kernlab limma locfdr Matrix matrixStats mbkmeans NMF phylobase pracma RColorBrewer Rcpp S4Vectors scales SingleCellExperiment stringr SummarizedExperiment zinbwave]; }; + clusterProfiler = derive2 { name="clusterProfiler"; version="4.10.0"; sha256="1vlrybyczfci5qnw50k0y2j2853r2p1ff5bpj35rdca4ja0iqh2q"; depends=[AnnotationDbi DOSE downloader dplyr enrichplot GO_db GOSemSim gson httr igraph magrittr plyr qvalue rlang tidyr yulab_utils]; }; + clusterSeq = derive2 { name="clusterSeq"; version="1.26.0"; sha256="0fl9ycd10rbghgxq7gnfwy9i3vcxndx8grhpvk46zlxb2spa5lvf"; depends=[baySeq BiocGenerics BiocParallel]; }; + clusterStab = derive2 { name="clusterStab"; version="1.74.0"; sha256="10xk9654zhan2ssbj5r147z4ic2jl29h5jnhc711w4fg8xrrgpa8"; depends=[Biobase]; }; + clustifyr = derive2 { name="clustifyr"; version="1.14.0"; sha256="0cfpjwaab7cswbi7wk58hn3wa9xh84l1sdi3jjkrx7hpm4q4kspn"; depends=[cowplot dplyr entropy fgsea ggplot2 httr Matrix matrixStats proxy rlang S4Vectors scales SingleCellExperiment stringr SummarizedExperiment tibble tidyr]; }; + cmapR = derive2 { name="cmapR"; version="1.14.0"; sha256="02nwmgzb1765z79mnp0fp6gdfl42iglhw5xd145incvn7zhf9a4m"; depends=[data_table flowCore matrixStats rhdf5 SummarizedExperiment]; }; + cn_farms = derive2 { name="cn.farms"; version="1.50.0"; sha256="1banis7clrcvv73n0idjay9izmnr1p5qq5ggq26kwmwx3knlfpzr"; depends=[affxparser Biobase DBI DNAcopy ff lattice oligo oligoClasses preprocessCore snow]; }; + cn_mops = derive2 { name="cn.mops"; version="1.48.0"; sha256="0ygzvxlklfhmq6wpwzcjrwdyyskb2hgm9icpl7ngzjk2s9p18knf"; depends=[Biobase BiocGenerics exomeCopy GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; + cnvGSA = derive2 { name="cnvGSA"; version="1.46.0"; sha256="1knx58gc3r1j7ixzc4jf76hg52ssxzjinsjhmkpimdcmq7azdv3s"; depends=[brglm doParallel foreach GenomicRanges splitstackshape]; }; + coGPS = derive2 { name="coGPS"; version="1.46.0"; sha256="0lhp3a8nrnm3k7gmxfbnkvqsnnkky0h6g1842nnh2agf2gc7xmx7"; depends=[]; }; + coMET = derive2 { name="coMET"; version="1.34.0"; sha256="1pkhnfcvrbj9y88qbbvly4arbz22x8zkx0jsvsmn5klg4xp11fdz"; depends=[biomaRt corrplot GenomicRanges gridExtra Gviz hash IRanges psych rtracklayer S4Vectors]; }; + coMethDMR = derive2 { name="coMethDMR"; version="1.6.0"; sha256="1pmshw18iyvgxmzhhid6276adhjw5hwfhladcd207qg927rnvlm5"; depends=[AnnotationHub BiocParallel bumphunter ExperimentHub GenomicRanges IRanges lmerTest]; }; + coRdon = derive2 { name="coRdon"; version="1.20.0"; sha256="18q39xxfbfak6qx3vwpksrngkimppvarck98yhp4bv0mwpvcsg0b"; depends=[Biobase Biostrings data_table dplyr ggplot2 purrr stringr]; }; + codelink = derive2 { name="codelink"; version="1.70.0"; sha256="145psgig0nvgq4zjpdv5m9rqlwn3vva06vznzymwvdcipcb9vllm"; depends=[annotate Biobase BiocGenerics limma]; }; + cogena = derive2 { name="cogena"; version="1.36.0"; sha256="0i0bglq3dkrprxm3yw0np65gy0mk50wsrzm0lpglfin9hyws3hzf"; depends=[amap apcluster Biobase biwt class cluster corrplot devtools doParallel dplyr fastcluster foreach ggplot2 gplots kohonen mclust reshape2 stringr tibble tidyr]; }; + cogeqc = derive2 { name="cogeqc"; version="1.6.0"; sha256="1mjzjq34pspkfyqhlyg931w74b760ikyxj62swhkpxab9wbj2830"; depends=[Biostrings ggbeeswarm ggplot2 ggtree igraph jsonlite patchwork reshape2 rlang scales]; }; + cola = derive2 { name="cola"; version="2.8.0"; sha256="0wrh606i0d372wi809fg7vpz9v7zn3pvqc551lnxyafczl6j5hy4"; depends=[BiocGenerics brew circlize clue cluster ComplexHeatmap crayon digest doParallel doRNG eulerr foreach GetoptLong GlobalOptions httr impute irlba knitr markdown matrixStats mclust microbenchmark png RColorBrewer Rcpp skmeans xml2]; }; + comapr = derive2 { name="comapr"; version="1.6.1"; sha256="13kiaa4r8i27mrxsssw075cscsvvak9j4l5cnqw66h1x4ca1f45c"; depends=[BiocParallel circlize dplyr foreach GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz IRanges Matrix plotly plyr RColorBrewer reshape2 rlang S4Vectors scales SummarizedExperiment tidyr]; }; + combi = derive2 { name="combi"; version="1.14.0"; sha256="1qhmfadhsi62k4mhwj16xx7pqdpgybmm70vpzfw146mwi2fwi0bs"; depends=[alabama BB Biobase cobs DBI ggplot2 limma Matrix nleqslv phyloseq reshape2 SummarizedExperiment tensor vegan]; }; + compEpiTools = derive2 { name="compEpiTools"; version="1.36.0"; sha256="19dvbpqcb4rwhw1hh4g18zbw1s72xplhph8lbwvim18h9wrw292f"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges GO_db gplots IRanges methylPipe Rsamtools S4Vectors topGO XVector]; }; + compSPOT = derive2 { name="compSPOT"; version="1.0.0"; sha256="13qsqvj4ijxr8xlg0lbj187g2vkwip9yj4g6mb1hzlng6d4ja4bb"; depends=[data_table ggplot2 ggpubr gridExtra magrittr plotly]; }; + compcodeR = derive2 { name="compcodeR"; version="1.38.0"; sha256="011y57ly6c72p8ch1384d6v30mnihr7si0sbk86v0ii1ymmlbva3"; depends=[ape caTools edgeR ggplot2 gplots gtools KernSmooth knitr lattice limma markdown MASS matrixStats modeest phylolm rmarkdown ROCR shiny shinydashboard sm stringr vioplot]; }; + concordexR = derive2 { name="concordexR"; version="1.2.0"; sha256="06yp4q4kllprbjvqk6jcxgmc6rmhipgqxkk5ghrkz0fn0x7wcsdw"; depends=[BiocParallel cli DelayedArray ggplot2 Matrix pheatmap rlang scales]; }; + condiments = derive2 { name="condiments"; version="1.10.0"; sha256="1jx3gfy5pcpc8wimamvpw7zbjiyzzcbfkqlqn9rjs63lg04gqrm0"; depends=[BiocParallel distinct dplyr Ecume igraph magrittr matrixStats mgcv pbapply RANN SingleCellExperiment slingshot SummarizedExperiment TrajectoryUtils]; }; + consICA = derive2 { name="consICA"; version="2.0.0"; sha256="0xi21ww9vh1m8b6agk2fnyvdj3aks1pv68rx4j512736rrgmhq50"; depends=[BiocParallel fastICA ggplot2 GO_db graph org_Hs_eg_db pheatmap Rfast sm SummarizedExperiment survival topGO]; }; + consensus = derive2 { name="consensus"; version="1.20.0"; sha256="1gcm5ghvjq41s5v1iazvyal73agnjw6wlhvq4q6n9bdmc6p72xbl"; depends=[gplots matrixStats RColorBrewer]; }; + consensusDE = derive2 { name="consensusDE"; version="1.20.0"; sha256="00y5iizshr8j3xjaza6gcnihdhq4174kzc6008zy10cc1swjyrg4"; depends=[airway AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings data_table dendextend DESeq2 EDASeq edgeR EnsDb_Hsapiens_v86 ensembldb GenomicAlignments GenomicFeatures limma org_Hs_eg_db pcaMethods RColorBrewer Rsamtools RUVSeq S4Vectors SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm3_ensGene]; }; + consensusOV = derive2 { name="consensusOV"; version="1.24.0"; sha256="0dsxxxi8ig3alx6ggfdj0xycc4dx796c2hranar1hx7xaxfz5yl3"; depends=[Biobase gdata genefu GSVA limma matrixStats randomForest]; }; + consensusSeekeR = derive2 { name="consensusSeekeR"; version="1.30.0"; sha256="0ddv5rwb4jwvykwpv8zdmbvw88c6k9hwzf8csj5ylywkr5b6z8nf"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges IRanges rtracklayer S4Vectors stringr]; }; + contiBAIT = derive2 { name="contiBAIT"; version="1.30.0"; sha256="1asyfx0mbg0pli2g533xmlppfw0s0f1y4vf2rfrnai4chsh1rh0k"; depends=[BH BiocGenerics BiocParallel clue cluster colorspace data_table diagram DNAcopy exomeCopy GenomicAlignments GenomicFiles GenomicRanges ggplot2 gplots gtools IRanges Rcpp reshape2 Rsamtools rtracklayer S4Vectors TSP]; }; + conumee = derive2 { name="conumee"; version="1.36.0"; sha256="1wn80253wpmvx09203nm2azfkfqz46g79pj1b38lc4nd7gzhlnp7"; depends=[DNAcopy GenomeInfoDb GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest IRanges minfi rtracklayer]; }; + convert = derive2 { name="convert"; version="1.78.0"; sha256="1sx4b3winpal84i689nkv1l3xhqzc2qlhwsdkkxhvkyrz7q64dcj"; depends=[Biobase limma marray]; }; + copa = derive2 { name="copa"; version="1.70.0"; sha256="05063is251m505i3pqfz4srh5hdchkmb8r4nd3f2ahdznb6hbwjf"; depends=[Biobase]; }; + corral = derive2 { name="corral"; version="1.12.0"; sha256="0j4krd9rafx373c620700154dh07r8ncckxqxa1nzkyrgw1zspbc"; depends=[ggplot2 ggthemes gridExtra irlba Matrix MultiAssayExperiment pals reshape2 SingleCellExperiment SummarizedExperiment transport]; }; + coseq = derive2 { name="coseq"; version="1.26.0"; sha256="1f850bzykgxc3zdpd8y0wll2i1kmf6rmx7nl7hqa6nhva6g18gd8"; depends=[BiocParallel capushe compositions corrplot DESeq2 e1071 edgeR ggplot2 HTSCluster HTSFilter mvtnorm Rmixmod S4Vectors scales SummarizedExperiment]; }; + cosmiq = derive2 { name="cosmiq"; version="1.36.0"; sha256="1mrczwiy1nbqv2qcvc7vmh7mfzg3ywdy4cfb7nmblm0rjd9rs7g9"; depends=[faahKO MassSpecWavelet pracma Rcpp xcms]; }; + cosmosR = derive2 { name="cosmosR"; version="1.10.0"; sha256="0y1qhasidhg0fywm65jn1qy1786kj45cl8zvgz5vbzdg8anbz5af"; depends=[CARNIVAL decoupleR dorothea dplyr GSEABase igraph progress purrr rlang stringr visNetwork]; }; + countsimQC = derive2 { name="countsimQC"; version="1.20.0"; sha256="02lswhazdgdyrn0vvv9i338av873l0a3ky8bjxm74a2s5aifmw3b"; depends=[caTools DESeq2 dplyr DT edgeR genefilter GenomeInfoDbData ggplot2 ragg randtests rmarkdown SummarizedExperiment tidyr]; }; + covEB = derive2 { name="covEB"; version="1.28.0"; sha256="0a04h3xbdqqszzsa30yrifrgxn8r6jjvb0hs7r4kvxjg3c6nmwfk"; depends=[Biobase gsl igraph LaplacesDemon Matrix mvtnorm]; }; + covRNA = derive2 { name="covRNA"; version="1.28.0"; sha256="1rkla4i86dwaqkjax2p1p6wlg1mxdpxvad097x1fa7dm5g2r3w04"; depends=[ade4 Biobase genefilter]; }; + cpvSNP = derive2 { name="cpvSNP"; version="1.34.0"; sha256="1bvc87rspc1p240m1cc6rqgdpk4hpbk3hgz6l5s95srmw1gmzg48"; depends=[BiocParallel corpcor GenomicFeatures ggplot2 GSEABase plyr]; }; + cqn = derive2 { name="cqn"; version="1.48.0"; sha256="0q5nf5a3yiii8r449dblckfhzi9gcxxc11sswlqxd5skbgw53yf8"; depends=[mclust nor1mix preprocessCore quantreg]; }; + crisprBase = derive2 { name="crisprBase"; version="1.6.0"; sha256="1j6rrslqvjbnz8i4c21as5is6l2q12p8i93yzs371qfwhq1cydw0"; depends=[BiocGenerics Biostrings GenomicRanges IRanges S4Vectors stringr]; }; + crisprBowtie = derive2 { name="crisprBowtie"; version="1.6.0"; sha256="1rh25h9ckyrm8jfxb5pmhaqhldkhdkgfv8c74ckj0q9sqlrq3mfa"; depends=[BiocGenerics Biostrings BSgenome crisprBase GenomeInfoDb GenomicRanges IRanges Rbowtie readr stringr]; }; + crisprBwa = derive2 { name="crisprBwa"; version="1.6.0"; sha256="19c9g233ymms085sx6v77m89rfm6g0nzarr7pgj4i9p7y5n3cj29"; depends=[BiocGenerics BSgenome crisprBase GenomeInfoDb Rbwa readr stringr]; }; + crisprDesign = derive2 { name="crisprDesign"; version="1.4.0"; sha256="1864ciggilcpxp3qi5b6hqfdj9l0w3r3q2n991gx4dmifvj601cj"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome crisprBase crisprBowtie crisprScore GenomeInfoDb GenomicFeatures GenomicRanges IRanges Matrix MatrixGenerics rtracklayer S4Vectors VariantAnnotation]; }; + crisprScore = derive2 { name="crisprScore"; version="1.6.0"; sha256="0a1qdjgy9j5dl5j5g15mjik3a9p42jqk00i8s342mghcrk44r9yy"; depends=[basilisk basilisk_utils BiocGenerics Biostrings crisprScoreData IRanges randomForest reticulate stringr XVector]; }; + crisprVerse = derive2 { name="crisprVerse"; version="1.4.0"; sha256="1cbqj7vnv3qy6w5g9h9fcfi5fnff2zyji2v2i1rc4nfbw1pdy8cv"; depends=[BiocManager cli crisprBase crisprBowtie crisprDesign crisprScore crisprScoreData crisprViz rlang]; }; + crisprViz = derive2 { name="crisprViz"; version="1.4.0"; sha256="17lkam2b5j8waf81y5jylj4s4ydswhkkzrjvrggw6bgjkw1wg3y7"; depends=[BiocGenerics Biostrings BSgenome crisprBase crisprDesign GenomeInfoDb GenomicFeatures GenomicRanges Gviz IRanges S4Vectors]; }; + crlmm = derive2 { name="crlmm"; version="1.60.0"; sha256="1pw7v4z9x002nfr816nqwgk8rgifrdmwg1d6x7rb5j66kcb1sbkj"; depends=[affyio beanplot Biobase BiocGenerics ellipse ff foreach illuminaio lattice limma matrixStats mvtnorm oligoClasses preprocessCore RcppEigen VGAM]; }; + crossmeta = derive2 { name="crossmeta"; version="1.28.0"; sha256="18q6v0bhxhmd05h7w9rg3gp5226hy5xw0na93fsvgdi01vmm6zmx"; depends=[affxparser affy AnnotationDbi Biobase BiocGenerics BiocManager data_table DBI DT edgeR fdrtool GEOquery limma matrixStats metaMA miniUI oligo RCurl reader readxl RSQLite shiny shinyBS shinyjs shinypanel shinyWidgets stringr sva tibble XML]; }; + csaw = derive2 { name="csaw"; version="1.36.1"; sha256="02sabpma6k87kzlrl4msh7l672bgbswvvlyr0nqmpw419h3znr7z"; depends=[BiocGenerics BiocParallel edgeR GenomeInfoDb GenomicRanges IRanges limma Matrix metapod Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment zlibbioc]; }; + csdR = derive2 { name="csdR"; version="1.8.0"; sha256="1rp40fj7mpxvy2lm76vsfpjacmlrz4h2viqkbkfz6mq5v6vw6kvh"; depends=[glue matrixStats Rcpp RhpcBLASctl WGCNA]; }; + ctc = derive2 { name="ctc"; version="1.76.0"; sha256="10a83rr0qhnzdhvlbyn0y690hxnl8q86z47dpimr6sq41w463im3"; depends=[amap]; }; + ctsGE = derive2 { name="ctsGE"; version="1.28.0"; sha256="1g1m87piqllylradccv8ggqzbcha4jbmwlllgfv3n0w70iil5297"; depends=[ccaPP ggplot2 limma reshape2 shiny stringr]; }; + cummeRbund = derive2 { name="cummeRbund"; version="2.44.0"; sha256="1a5x3jzagd1a385yk1brs4say02r0l21qqjak4cl6fsv8ihhy05s"; depends=[Biobase BiocGenerics fastcluster ggplot2 Gviz plyr reshape2 RSQLite rtracklayer S4Vectors]; }; + customCMPdb = derive2 { name="customCMPdb"; version="1.12.0"; sha256="15dk28w5z00z6bycy264b35jh29195hhxrab01qcrjdyjjvxixs7"; depends=[AnnotationHub BiocFileCache ChemmineR rappdirs RSQLite XML]; }; + customProDB = derive2 { name="customProDB"; version="1.41.0"; sha256="1g6ldfb3i8r3bmc13mgs73gq9my62k9dbj7f2nqm1gsa6fcaqamb"; depends=[AhoCorasickTrie AnnotationDbi biomaRt Biostrings DBI GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges plyr RCurl Rsamtools RSQLite rtracklayer S4Vectors stringr VariantAnnotation]; }; + cyanoFilter = derive2 { name="cyanoFilter"; version="1.10.0"; sha256="08lx2cwybpa07ds9klwp5sjf9gd06v8d5g9xcm5r7bisj3s8h19y"; depends=[Biobase cytometree flowClust flowCore flowDensity GGally ggplot2 mrfDepth]; }; + cycle = derive2 { name="cycle"; version="1.56.0"; sha256="0h30bv2gwpx04gp2wzifbqdf6s1qck3lhrs58rv3ak0q2frqk3yn"; depends=[Biobase Mfuzz]; }; + cydar = derive2 { name="cydar"; version="1.26.0"; sha256="01g3bs7hbnjlvsg3h65bwr1vzx7azkyq9w0b0ww4bmlllgwy2qfs"; depends=[Biobase BiocGenerics BiocNeighbors BiocParallel flowCore Rcpp S4Vectors shiny SingleCellExperiment SummarizedExperiment viridis]; }; + cytoKernel = derive2 { name="cytoKernel"; version="1.8.0"; sha256="18h696rdkny9n903nk580knq3sca4ih4v6phszy1jdmjmkliknc1"; depends=[ashr BiocParallel circlize ComplexHeatmap data_table dplyr magrittr Rcpp rlang S4Vectors SummarizedExperiment]; }; + cytoMEM = derive2 { name="cytoMEM"; version="1.6.0"; sha256="0fq8wjjrr2mlpsb4bd2r1m1c2whm5ryjlfsm8s27hy73m2j3xg5y"; depends=[flowCore gplots matrixStats]; }; + cytofQC = derive2 { name="cytofQC"; version="1.2.0"; sha256="11xhplp1r7g93j1mwahsy50q0iaw8x16h4w5r4knxylblsxb5wix"; depends=[CATALYST e1071 EZtune flowCore gbm ggplot2 hrbrthemes matrixStats randomForest rmarkdown S4Vectors SingleCellExperiment ssc SummarizedExperiment]; }; + cytolib = derive2 { name="cytolib"; version="2.14.0"; sha256="1r2slhzrp3gf45k5gknqgj3vjz7p0rx2yjzrbp020inj82fp4mgi"; depends=[BH Rhdf5lib RProtoBufLib]; }; + cytomapper = derive2 { name="cytomapper"; version="1.14.0"; sha256="0fz1wjhyhxb8yhrzwr03dnb7hybx1bf4prd3yixp4qi1ac2s4pp9"; depends=[BiocParallel DelayedArray EBImage ggbeeswarm ggplot2 HDF5Array matrixStats nnls raster RColorBrewer rhdf5 S4Vectors shiny shinydashboard SingleCellExperiment SpatialExperiment SummarizedExperiment svglite svgPanZoom viridis]; }; + cytoviewer = derive2 { name="cytoviewer"; version="1.2.0"; sha256="0vk7fj3qm0pslb8l80nbqzh7liyg7vmv35wqr94hvq230q92j958"; depends=[archive colourpicker cytomapper EBImage RColorBrewer S4Vectors shiny shinycssloaders shinydashboard SingleCellExperiment SummarizedExperiment svglite svgPanZoom viridis]; }; + dStruct = derive2 { name="dStruct"; version="1.8.0"; sha256="0a2blaswj9y5ba2kwa49194dqbpvn04l7ll6pckb4l6xx8xi2dr8"; depends=[ggplot2 IRanges purrr reshape2 rlang S4Vectors zoo]; }; + daMA = derive2 { name="daMA"; version="1.74.0"; sha256="1ckk8h6adylaxq6bh14ym9vvrrhsfglnaigqz16v96vsj8q9i336"; depends=[MASS]; }; + dada2 = derive2 { name="dada2"; version="1.30.0"; sha256="0rvnwbknvwksm50f4rw9965gnhy13rjgdfvv428xsqixgkkkyrf6"; depends=[BiocGenerics Biostrings ggplot2 IRanges Rcpp RcppParallel reshape2 ShortRead XVector]; }; + dagLogo = derive2 { name="dagLogo"; version="1.40.0"; sha256="1p9qkfsznwyisi94md29hmq6q26qrgda8r5hhvwfynr8mr11f5k3"; depends=[BiocGenerics biomaRt Biostrings httr motifStack pheatmap UniProt_ws]; }; + dcGSA = derive2 { name="dcGSA"; version="1.30.0"; sha256="08h3bc8g7md1iakzhkq47rppvazaz5lkfjhhjq0fvdbns0hk2w6i"; depends=[BiocParallel Matrix]; }; + dcanr = derive2 { name="dcanr"; version="1.18.0"; sha256="02ssbp4qvzzrz8a20vwhjj69v0hv8zkf39cnv4c5r2cp2yb8ywyw"; depends=[circlize doRNG foreach igraph Matrix plyr RColorBrewer reshape2 stringr]; }; + dce = derive2 { name="dce"; version="1.10.0"; sha256="0xyh1624pc1h1zrlr24yrknbf1xvqk2fiiy40xj30mw1100i9ric"; depends=[assertthat dplyr edgeR epiNEM expm ggplot2 ggraph glm2 glue graph graphite harmonicmeanp igraph logger magrittr MASS Matrix metap mnem naturalsort org_Hs_eg_db pcalg ppcor purrr reshape2 Rgraphviz rlang shadowtext tidygraph tidyverse]; }; + ddCt = derive2 { name="ddCt"; version="1.58.0"; sha256="1lgkcrjbifw91bkj96gy8zgcqbap2ilikdrhhkga1jzsbbmzzab5"; depends=[Biobase BiocGenerics lattice RColorBrewer xtable]; }; + ddPCRclust = derive2 { name="ddPCRclust"; version="1.22.0"; sha256="0cfdy5kjd1nyysnnm955zcvac6m626wzpk794iz85mw0pr7mlx2c"; depends=[clue flowCore flowDensity flowPeaks ggplot2 openxlsx plotrix R_utils SamSPECTRAL]; }; + dearseq = derive2 { name="dearseq"; version="1.14.0"; sha256="1ldxw457zsfphm6izxz2kvxy3719gszhxb8mymx8njg6islljy27"; depends=[CompQuadForm dplyr ggplot2 KernSmooth magrittr matrixStats patchwork pbapply reshape2 rlang scattermore statmod survey tibble viridisLite]; }; + debCAM = derive2 { name="debCAM"; version="1.20.0"; sha256="1swqqrlwin2i2qq46qyfziblbfsfyd5hf6w39hygp7fdkpic14b7"; depends=[apcluster Biobase BiocParallel corpcor DMwR2 geometry NMF nnls pcaPP rJava SummarizedExperiment]; }; + debrowser = derive2 { name="debrowser"; version="1.30.0"; sha256="07alsmkinqffxd7bdb3n6pbsabvair7z8mx3ab6yax4mbc0b2fxd"; depends=[annotate AnnotationDbi apeglm ashr clusterProfiler colourpicker DESeq2 DOSE DT edgeR enrichplot GenomicRanges ggplot2 gplots Harman heatmaply igraph IRanges jsonlite limma org_Hs_eg_db org_Mm_eg_db pathview plotly RColorBrewer RCurl reshape2 S4Vectors shiny shinyBS shinydashboard shinyjs stringi SummarizedExperiment sva]; }; + decompTumor2Sig = derive2 { name="decompTumor2Sig"; version="2.18.0"; sha256="13vwrg82zprb9h72azdqd0rkm5k2xm4mw7viawbzwkkqvg6azsdj"; depends=[BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg19 data_table GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra Matrix plyr quadprog readxl S4Vectors SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; + decontX = derive2 { name="decontX"; version="1.0.0"; sha256="1675kwnhi1zhksxc365wih908lmfrhfpxlig5k80fipg0g1530b8"; depends=[BH celda dbscan DelayedArray ggplot2 Matrix MCMCprecision patchwork plyr Rcpp RcppEigen RcppParallel reshape2 rstan rstantools S4Vectors scater Seurat SingleCellExperiment StanHeaders SummarizedExperiment withr]; }; + decontam = derive2 { name="decontam"; version="1.22.0"; sha256="0m4zd6qxsrp7w9a8psg8xcrviim6plwgwn4rgdxy8ag0c442fsvk"; depends=[ggplot2 reshape2]; }; + deconvR = derive2 { name="deconvR"; version="1.8.0"; sha256="0pl4nwaf8swwz9nl2ynf9mm38d0x223gpz89qrj03yihxszy2n13"; depends=[assertthat BiocGenerics data_table dplyr e1071 foreach GenomicRanges IRanges magrittr MASS matrixStats methylKit minfi nnls quadprog rsq S4Vectors tidyr]; }; + decoupleR = derive2 { name="decoupleR"; version="2.8.0"; sha256="1vnlrkza33nb80qf810yfz66m3j84p8chhfdxak5lvpciqwx7dh9"; depends=[broom dplyr magrittr Matrix purrr rlang stringr tibble tidyr tidyselect withr]; }; + deepSNV = derive2 { name="deepSNV"; version="1.48.0"; sha256="16dkjqy9ba5v8nikaxdjcz7rr60dg46sfsgrjjlp82rf3256bf8r"; depends=[Biostrings GenomicRanges IRanges Rhtslib SummarizedExperiment VariantAnnotation VGAM]; }; + deltaCaptureC = derive2 { name="deltaCaptureC"; version="1.16.0"; sha256="1mapr2c1q444f2jq2mhr4bwx629qzwlbhsvisv7gcmmplsxn3f3b"; depends=[DESeq2 GenomicRanges ggplot2 IRanges SummarizedExperiment tictoc]; }; + deltaGseg = derive2 { name="deltaGseg"; version="1.42.0"; sha256="05q2b8cm60j4a4mz5b5786vcd8fwzsaz77l467ymk2v6g2lr0ndf"; depends=[changepoint fBasics ggplot2 pvclust reshape scales tseries wavethresh]; }; + demuxSNP = derive2 { name="demuxSNP"; version="1.0.0"; sha256="183s8i5gzjw55szp0pv47x442zk10swc8g6k1mpjv6qkxjdr3n4c"; depends=[BiocGenerics class combinat demuxmix ensembldb GenomeInfoDb IRanges Matrix MatrixGenerics SingleCellExperiment SummarizedExperiment VariantAnnotation]; }; + demuxmix = derive2 { name="demuxmix"; version="1.4.0"; sha256="10wa5nshp3j9llnsb8qbjd3nsrk16cng0wikr2qnrn5wjwvl2xbw"; depends=[ggplot2 gridExtra MASS Matrix]; }; + densvis = derive2 { name="densvis"; version="1.12.0"; sha256="164pyy5l69qhdgqkxjginapvfjy0rjx4p6m83cijz6jbz6kf6gks"; depends=[assertthat basilisk irlba Rcpp reticulate Rtsne]; }; + derfinder = derive2 { name="derfinder"; version="1.36.0"; sha256="0rj3szlpbxiwj3rajmr6ccnbs1mkcskql12iip8zgswmhz76rxh1"; depends=[AnnotationDbi BiocGenerics BiocParallel bumphunter derfinderHelper GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges Hmisc IRanges qvalue Rsamtools rtracklayer S4Vectors]; }; + derfinderHelper = derive2 { name="derfinderHelper"; version="1.36.0"; sha256="01vq8xnszxqhijranzaciapw8mcn6px0jhx9zb9lyqhsvaffjh5r"; depends=[IRanges Matrix S4Vectors]; }; + derfinderPlot = derive2 { name="derfinderPlot"; version="1.36.0"; sha256="1kzndvxj1cggyymifksydkif47z1r4z9lqcz3f0ni2a515q52acg"; depends=[derfinder GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 IRanges limma plyr RColorBrewer reshape2 S4Vectors scales]; }; + destiny = derive2 { name="destiny"; version="3.16.0"; sha256="06xwyqlsas98lxmd0qw5ysjwbk397kyapd5jq5pzjrynsj4r9xn6"; depends=[Biobase BiocGenerics ggplot_multistats ggplot2 ggthemes irlba knn_covertree Matrix pcaMethods proxy Rcpp RcppEigen RcppHNSW RSpectra scales scatterplot3d SingleCellExperiment smoother SummarizedExperiment tidyr tidyselect VIM]; }; + diffGeneAnalysis = derive2 { name="diffGeneAnalysis"; version="1.84.0"; sha256="17ads5a8pxmw0a8jbrj4xzg64937q72qs8vi8m4841hdnlxd68b0"; depends=[minpack_lm]; }; + diffHic = derive2 { name="diffHic"; version="1.34.0"; sha256="1dcrbwvp8mq7bmp8lk8z9sa890685d5z86jflbfqs4hs16jm0ny0"; depends=[BiocGenerics Biostrings BSgenome csaw edgeR GenomeInfoDb GenomicRanges InteractionSet IRanges limma locfit Rcpp rhdf5 Rhtslib Rsamtools rtracklayer S4Vectors SummarizedExperiment zlibbioc]; }; + diffUTR = derive2 { name="diffUTR"; version="1.10.0"; sha256="0zf6hr66wppjwyqb4i1k2l916pbfvpp0bbp7fs743h2bq551d74j"; depends=[ComplexHeatmap DEXSeq dplyr edgeR ensembldb GenomeInfoDb GenomicRanges ggplot2 ggrepel IRanges limma matrixStats Rsubread rtracklayer S4Vectors stringi SummarizedExperiment viridisLite]; }; + diffcoexp = derive2 { name="diffcoexp"; version="1.22.0"; sha256="0hgf6x850b0315c26nik0fbdnd0p6fmviz8651abvmw96jy29g43"; depends=[BiocGenerics DiffCorr igraph psych SummarizedExperiment WGCNA]; }; + diffcyt = derive2 { name="diffcyt"; version="1.22.0"; sha256="1k3gzzgda29m2v7v8hqw7c2s8z778p0plqxag443lhsxcm6izcxi"; depends=[circlize ComplexHeatmap dplyr edgeR flowCore FlowSOM limma lme4 magrittr multcomp reshape2 S4Vectors SummarizedExperiment tidyr]; }; + diffuStats = derive2 { name="diffuStats"; version="1.22.0"; sha256="0pysp8l747cvjk13334rkf6rg38l86bykf87csnyinc921i45iry"; depends=[checkmate expm igraph MASS Matrix plyr precrec Rcpp RcppArmadillo RcppParallel]; }; + diggit = derive2 { name="diggit"; version="1.34.0"; sha256="15f4mcd9rx7a6ihpwv78l8mjnm087fbppmlvm1isvwgp6qaqjxgh"; depends=[Biobase ks viper]; }; + dir_expiry = derive2 { name="dir.expiry"; version="1.10.0"; sha256="191b8qhldxvsw09l2c0ffc1ldmx0mqxgsx6m074f28l01d3c1d9q"; depends=[filelock]; }; + discordant = derive2 { name="discordant"; version="1.26.0"; sha256="04hakn499fmcszk618z0y60xsrm1m9jcn7dxvblqvypasvvvbh1j"; depends=[Biobase biwt dplyr gtools MASS Rcpp]; }; + distinct = derive2 { name="distinct"; version="1.14.5"; sha256="14kq3vq6006r8wjwgkbl1dc2l89jd434anhdfwaz7gi63bw52hq2"; depends=[doParallel doRNG foreach ggplot2 limma Matrix Rcpp RcppArmadillo scater SingleCellExperiment SummarizedExperiment]; }; + dittoSeq = derive2 { name="dittoSeq"; version="1.14.0"; sha256="17ks6bbhv8iw8grzlkibgqmwggrqp5hikg1p49m4a6b6bayillv2"; depends=[colorspace cowplot ggplot2 ggrepel ggridges gridExtra pheatmap reshape2 S4Vectors SingleCellExperiment SummarizedExperiment]; }; + divergence = derive2 { name="divergence"; version="1.18.0"; sha256="0n6mh253kyvlf43zc8j4dmnjsz45n843pyfzpxnxzk3jdbw050wx"; depends=[SummarizedExperiment]; }; + dks = derive2 { name="dks"; version="1.48.0"; sha256="0xswv7bjz0c2czrwzbaxf8fnb3k7bx129lzvp6f34c3gm4kbj1sd"; depends=[cubature]; }; + dmrseq = derive2 { name="dmrseq"; version="1.22.0"; sha256="0z53vh5qirkyn7yw3g2m2kj6dzii96l81vc8j59n2dl7p602l9a2"; depends=[AnnotationHub annotatr BiocParallel bsseq bumphunter DelayedMatrixStats GenomeInfoDb GenomicRanges ggplot2 IRanges locfit matrixStats nlme outliers RColorBrewer rtracklayer S4Vectors]; }; + doppelgangR = derive2 { name="doppelgangR"; version="1.30.0"; sha256="0hahrj5c7fxsz91pkhrii46xwkri468mkb3wca469cqgw2nm1ihd"; depends=[Biobase BiocParallel digest impute mnormt SummarizedExperiment sva]; }; + doseR = derive2 { name="doseR"; version="1.18.0"; sha256="08wmzhaiva0bbyrnbnaf8av537abnk916fxfqy21cz52hr317v8n"; depends=[digest edgeR lme4 matrixStats mclust RUnit S4Vectors SummarizedExperiment]; }; + doubletrouble = derive2 { name="doubletrouble"; version="1.2.1"; sha256="0xh3ij47cspczg86kfbdysb844czd8rcdpik39n1nvzwhr450ylh"; depends=[AnnotationDbi Biostrings GenomicFeatures GenomicRanges ggplot2 mclust MSA2dist rlang syntenet]; }; + drawProteins = derive2 { name="drawProteins"; version="1.22.0"; sha256="09wm0dkz5flxkhk9x6rd93qi1p4ik6q50qbzfrm0mpghzpb6hchj"; depends=[dplyr ggplot2 httr readr tidyr]; }; + dreamlet = derive2 { name="dreamlet"; version="1.0.0"; sha256="035b0wq8gkgp3vmnz8pad3br3lvd5alyrfd5yn0grk8md7wzryzf"; depends=[ashr beachmat BiocGenerics BiocParallel data_table DelayedArray DelayedMatrixStats dplyr edgeR ggplot2 ggrepel GSEABase gtools IRanges limma lme4 mashr MASS Matrix MatrixGenerics purrr Rcpp Rdpack reshape2 S4Vectors scattermore SingleCellExperiment sparseMatrixStats SummarizedExperiment tidyr variancePartition zenith]; }; + drugTargetInteractions = derive2 { name="drugTargetInteractions"; version="1.10.1"; sha256="035g95v297mqzjgjk6s50c19n3hswhzkndkval3yklliycgbd92s"; depends=[AnnotationFilter BiocFileCache biomaRt dplyr ensembldb rappdirs RSQLite S4Vectors UniProt_ws]; }; + dupRadar = derive2 { name="dupRadar"; version="1.32.0"; sha256="067hyf4pfsza2vpjc88wb95mynrmfz1wd5sc3yd69x09w4c1iz20"; depends=[KernSmooth Rsubread]; }; + dyebias = derive2 { name="dyebias"; version="1.62.0"; sha256="0wph2a830n5bszlby55ia4gay8mly3gg6q0ngw4ma0ycdvkh3glx"; depends=[Biobase marray]; }; + easier = derive2 { name="easier"; version="1.8.0"; sha256="0llgg9hvadi3daw3j4vh41ivjw7q2x3l9rgxd49lpzdfd5v13kv1"; depends=[BiocParallel coin decoupleR DESeq2 dorothea dplyr easierData ggplot2 ggpubr ggrepel magrittr matrixStats progeny quantiseqr reshape2 rlang ROCR rstatix tibble tidyr]; }; + easyRNASeq = derive2 { name="easyRNASeq"; version="2.38.0"; sha256="0hirbj98kq1gvf56adr60jidij9mgqv3s0fqh3m97m5zf928l2pz"; depends=[Biobase BiocFileCache BiocGenerics BiocParallel biomaRt Biostrings edgeR GenomeInfoDb genomeIntervals GenomicAlignments GenomicRanges IRanges locfit LSD rappdirs Rsamtools S4Vectors ShortRead SummarizedExperiment]; }; + easylift = derive2 { name="easylift"; version="1.0.0"; sha256="1xdb8xp8f3hy0mv62z3chx7zi2nfzfijc4pwl8dn71q05lj8jh1n"; depends=[BiocFileCache GenomeInfoDb GenomicRanges R_utils rtracklayer]; }; + easyreporting = derive2 { name="easyreporting"; version="1.14.0"; sha256="0y2sjs1vc8qar9ns48xhcx9pjkxlw5zs0yg2ddprby42asds53ci"; depends=[rlang rmarkdown shiny]; }; + ecolitk = derive2 { name="ecolitk"; version="1.74.0"; sha256="1kdq5a8r6lzvrcafp4r2spslnkxaz5a4csmwi9mpn4h9sjgxbw53"; depends=[Biobase]; }; + edge = derive2 { name="edge"; version="2.34.0"; sha256="1slfbrj9syad9mjr0q9cg9glc363ggsn2qz2yx90m3cpiwvq8qxb"; depends=[Biobase MASS qvalue snm sva]; }; + edgeR = derive2 { name="edgeR"; version="4.0.5"; sha256="16cghh83v14jdq5n6xkm3jxj87n6l6zrxjgqdwb2ffgc26vkpb7w"; depends=[limma locfit Rcpp]; }; + eds = derive2 { name="eds"; version="1.4.0"; sha256="0xdipsv2s5vl754i37xlsim8b2saz3p0355fbmn0iyc626bj00ya"; depends=[Matrix Rcpp]; }; + eiR = derive2 { name="eiR"; version="1.42.0"; sha256="0hz4d0did83jjl8x3j5bm2rd6vsbi6b7zsc2k5bhcax280jq3hjk"; depends=[BiocGenerics ChemmineR DBI digest RcppAnnoy RCurl RUnit snow snowfall]; }; + eisaR = derive2 { name="eisaR"; version="1.14.0"; sha256="0yhjdx4yvn160vf589liks6pj6p9s6yvdisb0rs9vic5mx46jkxb"; depends=[BiocGenerics edgeR GenomicRanges IRanges limma S4Vectors SummarizedExperiment]; }; + enhancerHomologSearch = derive2 { name="enhancerHomologSearch"; version="1.8.2"; sha256="1j5gbqin6qscz83sy1gk90afzyzp4njp8y9ajzfxsbhapcpx729h"; depends=[BiocFileCache BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges httr IRanges jsonlite Matrix motifmatchr Rcpp rtracklayer S4Vectors]; }; + enrichTF = derive2 { name="enrichTF"; version="1.18.0"; sha256="0lhmlxw7mpb76w2agm25v5qzxgf28wfw2xc0fnlqn2sbbfj295y9"; depends=[BiocGenerics BSgenome clusterProfiler GenomeInfoDb GenomicRanges ggplot2 ggpubr heatmap3 IRanges JASPAR2018 magrittr motifmatchr pipeFrame R_utils rmarkdown rtracklayer S4Vectors TFBSTools]; }; + enrichViewNet = derive2 { name="enrichViewNet"; version="1.0.0"; sha256="0475c20q3sc9srgqrkpabspcqlsbh63r4nfl3qjr97nsj5jxsywv"; depends=[enrichplot gprofiler2 jsonlite RCy3 strex stringr]; }; + enrichplot = derive2 { name="enrichplot"; version="1.22.0"; sha256="05ps96adbn4h8i0mqflzm1h6chjlrmfz6hx393232bhb995jfllx"; depends=[aplot DOSE ggfun ggnewscale ggplot2 ggraph ggtree GOSemSim igraph magrittr plyr purrr RColorBrewer reshape2 rlang scatterpie shadowtext yulab_utils]; }; + ensemblVEP = derive2 { name="ensemblVEP"; version="1.44.0"; sha256="1kglg8gxaaihs1m621rrwiw4874k4vkm27s7522vc8qd0frzjm66"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges S4Vectors SummarizedExperiment VariantAnnotation]; }; + ensembldb = derive2 { name="ensembldb"; version="2.26.0"; sha256="010fp03x1splddxmhpxlfv1i3paqgbcxm7l9z2lmm6zfixhb158a"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges ProtGenerics Rsamtools RSQLite rtracklayer S4Vectors]; }; + epiNEM = derive2 { name="epiNEM"; version="1.26.0"; sha256="02v3p3jdwrizx42ddkzhaz2hhvamdy4vdk16hq79kx12aqgniplf"; depends=[BoolNet e1071 graph gtools igraph latex2exp lattice latticeExtra minet mnem pcalg RColorBrewer]; }; + epialleleR = derive2 { name="epialleleR"; version="1.10.0"; sha256="1zdgjmdxzpk8r3hnx413r7m7srmadx9fi694ib4ry89h5ky6ckqx"; depends=[BH BiocGenerics data_table GenomeInfoDb GenomicRanges Rcpp Rhtslib SummarizedExperiment VariantAnnotation zlibbioc]; }; + epidecodeR = derive2 { name="epidecodeR"; version="1.10.0"; sha256="0187186mxflij9kf89sbbj30yk9bdfjhmcy2vrykx8rq4vn9rs4p"; depends=[dplyr EnvStats GenomicRanges ggplot2 ggpubr IRanges rstatix rtracklayer]; }; + epigenomix = derive2 { name="epigenomix"; version="1.42.0"; sha256="08q57qbrw4z69dzdsivl9a5r9iin84f2rbkdinm4vdnh7zlma7ab"; depends=[beadarray Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges MCMCpack Rsamtools S4Vectors SummarizedExperiment]; }; + epigraHMM = derive2 { name="epigraHMM"; version="1.10.0"; sha256="0x7phf7hak1mvlpswdkk18dqas0yri874h8h97lw0is7f70vvxrn"; depends=[bamsignals csaw data_table GenomeInfoDb GenomicRanges ggplot2 ggpubr GreyListChIP IRanges limma magrittr MASS Matrix pheatmap Rcpp RcppArmadillo rhdf5 Rhdf5lib Rsamtools rtracklayer S4Vectors scales SummarizedExperiment]; }; + epimutacions = derive2 { name="epimutacions"; version="1.6.1"; sha256="1gkq4fhk406cdkmydbvpgp22v4q9wb1ahddblwdvnha1vnraypga"; depends=[AnnotationDbi AnnotationHub BiocGenerics BiocParallel biomaRt bumphunter ensembldb epimutacionsData ExperimentHub GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel gridExtra Gviz Homo_sapiens IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest IRanges isotree matrixStats minfi purrr reshape2 robustbase rtracklayer S4Vectors SummarizedExperiment tibble TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + epistack = derive2 { name="epistack"; version="1.8.0"; sha256="0m7j1dxqmzfz4b6wkb0zczz5pzy4g23l80qpmwrdffn2m3q2r2vk"; depends=[BiocGenerics GenomicRanges IRanges plotrix S4Vectors SummarizedExperiment]; }; + epistasisGA = derive2 { name="epistasisGA"; version="1.4.0"; sha256="0dnq5a40cjrmr2r8dzc479jvazscv8nyzrsb15n7y0sp6g6nfj11"; depends=[batchtools BH bigmemory BiocParallel data_table ggplot2 igraph matrixStats qgraph Rcpp RcppArmadillo survival]; }; + epivizr = derive2 { name="epivizr"; version="2.32.0"; sha256="093i6j073ny5j1zl9spsrcclqi7ylfij2pn00s89k0pqc9bs85rj"; depends=[bumphunter epivizrData epivizrServer GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + epivizrChart = derive2 { name="epivizrChart"; version="1.24.0"; sha256="17v454wxbdz5696q3dm606r3n3lfabdpi8mh8shmv7a6kvm5pyvq"; depends=[BiocGenerics epivizrData epivizrServer htmltools rjson]; }; + epivizrData = derive2 { name="epivizrData"; version="1.30.0"; sha256="0r93s1nb7vj49c2biqpzbwpf68jaslxklha98aicq7ddxzdg1yl0"; depends=[Biobase ensembldb epivizrServer GenomeInfoDb GenomicFeatures GenomicRanges IRanges OrganismDbi S4Vectors SummarizedExperiment]; }; + epivizrServer = derive2 { name="epivizrServer"; version="1.30.0"; sha256="03dmgiifs39vy5igbjjy6xlaz5bzc1zgjsr32afn0vdbyq678fry"; depends=[httpuv mime R6 rjson]; }; + epivizrStandalone = derive2 { name="epivizrStandalone"; version="1.30.0"; sha256="0k7s3agkhf89pwkfjcg54ywnfl2anxwvgb4kws6iamyk4q337fz3"; depends=[BiocGenerics epivizr epivizrServer GenomeInfoDb GenomicFeatures git2r S4Vectors]; }; + erccdashboard = derive2 { name="erccdashboard"; version="1.36.0"; sha256="12smnn06i8mj5rq51hsmay7nz8f1hg19xxdbwax511l96mjjrq2p"; depends=[edgeR ggplot2 gplots gridExtra gtools limma locfit MASS plyr qvalue reshape2 ROCR scales stringr]; }; + erma = derive2 { name="erma"; version="1.18.0"; sha256="0vapjfzhwlzxd049fsr00jd7lp48h9qwd95m2sqhqryqz1vsi7hz"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel GenomeInfoDb GenomicFiles GenomicRanges ggplot2 Homo_sapiens IRanges rtracklayer S4Vectors shiny SummarizedExperiment]; }; + esATAC = derive2 { name="esATAC"; version="1.24.0"; sha256="1922xgk3zq9r9j5r76ha5a7lpmxbix10i84yckg94k1i4bm71c51"; depends=[AnnotationDbi BiocGenerics BiocManager Biostrings BSgenome ChIPseeker clusterProfiler corrplot digest GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 igraph IRanges JASPAR2018 knitr magrittr motifmatchr pipeFrame R_utils Rbowtie2 Rcpp rJava rmarkdown Rsamtools rtracklayer S4Vectors ShortRead TFBSTools VennDiagram]; }; + escape = derive2 { name="escape"; version="1.12.0"; sha256="0bmin69ax7l5x3a0k9mv183277a0hl4znx02y79v2ilkgqkdm7fn"; depends=[BiocParallel broom data_table dplyr ggplot2 ggridges GSEABase GSVA Matrix MatrixGenerics msigdbr patchwork reshape2 rlang SingleCellExperiment stringr SummarizedExperiment UCell]; }; + escheR = derive2 { name="escheR"; version="1.2.0"; sha256="0hb1kkd1c57wpyfng5rmbnfqcl6dv84smxv5dj103ki3h56v55yr"; depends=[ggplot2 rlang SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; + esetVis = derive2 { name="esetVis"; version="1.28.2"; sha256="1yb0z3q056rl41g4igww7d66w9qwdd6z2cfjyr3185z53za39a3l"; depends=[Biobase hexbin MASS MLP mpm Rtsne]; }; + eudysbiome = derive2 { name="eudysbiome"; version="1.32.0"; sha256="0any342ja9y45h2adzz7aj358psydgk6379kmgrvfwmwjnrdblkx"; depends=[Biostrings plyr R_utils Rsamtools]; }; + evaluomeR = derive2 { name="evaluomeR"; version="1.18.0"; sha256="06nri3a6y9vp5frk2d3vvyqnm9jgdrfl3qlldka6dpmynyfdw04i"; depends=[class cluster corrplot flexmix fpc ggdendro ggplot2 kableExtra MASS matrixStats mclust MultiAssayExperiment plotrix prabclus randomForest Rdpack reshape2 SummarizedExperiment]; }; + exomeCopy = derive2 { name="exomeCopy"; version="1.48.0"; sha256="1d3qkr05q8nl3fj0y4qib0q37pwjh004p746nnzk8fmms75l1p11"; depends=[GenomeInfoDb GenomicRanges IRanges Rsamtools]; }; + exomePeak2 = derive2 { name="exomePeak2"; version="1.14.3"; sha256="1hvz18hlvljbv0cmdlxzvsl2ysb5m0c5qq2y8jxzsby3zxlqplph"; depends=[BiocGenerics BiocParallel Biostrings BSgenome DESeq2 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges magrittr mclust Rsamtools rtracklayer S4Vectors speedglm SummarizedExperiment]; }; + extraChIPs = derive2 { name="extraChIPs"; version="1.6.0"; sha256="0zn4w2hph9w0y4s0fg72lw0ir6c0qm70hips3iy0w3l8jvziq0wj"; depends=[BiocIO BiocParallel broom ComplexUpset csaw dplyr edgeR EnrichedHeatmap forcats GenomeInfoDb GenomicInteractions GenomicRanges ggforce ggplot2 ggrepel ggside glue Gviz InteractionSet IRanges limma matrixStats patchwork RColorBrewer rlang Rsamtools rtracklayer S4Vectors scales stringr SummarizedExperiment tibble tidyr tidyselect vctrs VennDiagram]; }; + fCCAC = derive2 { name="fCCAC"; version="1.28.0"; sha256="0xz7c62nm8imcf0d2i3n4b9x31y0xpdb5hgp2cxgz0vl902wc00k"; depends=[ComplexHeatmap fda genomation GenomicRanges ggplot2 IRanges RColorBrewer S4Vectors]; }; + fCI = derive2 { name="fCI"; version="1.32.0"; sha256="1c17xi34j5y5ic3wr1rypzpcmxr5j81b331pz89c4n2y4fs6dghz"; depends=[FNN gtools psych rgl VennDiagram zoo]; }; + fabia = derive2 { name="fabia"; version="2.48.0"; sha256="1i64dxl7xr6k04hgg231hx11d2xl2kl59svqg90xrykjxy3j6v49"; depends=[Biobase]; }; + factDesign = derive2 { name="factDesign"; version="1.78.0"; sha256="0nnjsfvn8abjkjm4f2phwb9cfk6qp4nx1nqqvz20lwhb76xq7ydh"; depends=[Biobase]; }; + factR = derive2 { name="factR"; version="1.4.0"; sha256="1r4r7qqnjf0gfizaqbsjf8rragbmnrf9p5xfyizx6ipzsggzadxv"; depends=[BiocGenerics BiocParallel Biostrings crayon data_table dplyr drawProteins GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges pbapply purrr RCurl rlang rtracklayer S4Vectors stringr tibble tidyr wiggleplotr XML]; }; + famat = derive2 { name="famat"; version="1.12.0"; sha256="01pp56ckabvxd2v5kc5kzxbzh3f9kkqdb9w5i8z7z0c0x4497nnj"; depends=[BiasedUrn clusterProfiler dplyr DT GO_db gprofiler2 KEGGREST magrittr mgcv ontologyIndex org_Hs_eg_db plotly reactome_db rWikiPathways shiny shinyBS shinydashboard stringr tidyr]; }; + fastLiquidAssociation = derive2 { name="fastLiquidAssociation"; version="1.38.0"; sha256="1l1fv0sjdw1j3ckywqczhxd0dnxp29rkvi7fcl9pkg7ph04w9x5s"; depends=[doParallel Hmisc impute LiquidAssociation preprocessCore WGCNA]; }; + fastreeR = derive2 { name="fastreeR"; version="1.6.0"; sha256="1nvcq1c6snw9468mjcqxn9bdmbb7slwpbwx80mmsj6859cikd2d5"; depends=[ape data_table dynamicTreeCut R_utils rJava stringr]; }; + fastseg = derive2 { name="fastseg"; version="1.48.0"; sha256="10g9mdh7nzdz2b1k5gg5hk35lpapcnbs3p3z17k15aq040lpm236"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors]; }; + fcScan = derive2 { name="fcScan"; version="1.16.0"; sha256="0hhad9vg43j0yz8fp2w7qdhvdy77yr7anv0fi170042x3piq1q7r"; depends=[doParallel foreach GenomicRanges IRanges plyr rtracklayer SummarizedExperiment VariantAnnotation]; }; + fdrame = derive2 { name="fdrame"; version="1.74.0"; sha256="03fs7k26m70wq7rkaf4syzirjylxql2jfk8gaqih1xa5mazf0gsw"; depends=[]; }; + fedup = derive2 { name="fedup"; version="1.10.0"; sha256="00prfzq9yjn8gls3xl1ihfwc8sz6y16rqvihi2y84lwi8nxihii6"; depends=[data_table dplyr forcats ggplot2 ggthemes openxlsx RColorBrewer RCy3 tibble]; }; + fenr = derive2 { name="fenr"; version="1.0.0"; sha256="0xdvq5a27fx44jwd3lk88hgzwz6bdndz7c499bip6i60iwvrw4ls"; depends=[assertthat BiocFileCache biomaRt dplyr ggplot2 httr jsonlite progress purrr readr rlang shiny stringr tibble tidyr tidyselect XML]; }; + ffpe = derive2 { name="ffpe"; version="1.46.0"; sha256="1nmb27vxldjxkqk2ghfwlsv3wwxvl0xqz53zqlxc4i3q5a8p0dhf"; depends=[affy Biobase BiocGenerics lumi methylumi sfsmisc TTR]; }; + fgga = derive2 { name="fgga"; version="1.10.2"; sha256="1cbd3gbs2414mfjb275jhvvm9h2fh4d27qpj0sngylzc33m6sdfp"; depends=[BiocFileCache curl e1071 graph gRbase igraph jsonlite RBGL]; }; + fgsea = derive2 { name="fgsea"; version="1.28.0"; sha256="0sykd4ingpw41615hbr3vw9yd1ks225hdb5qxnhbk4m4wxj814ql"; depends=[BH BiocParallel cowplot data_table fastmatch ggplot2 Matrix Rcpp scales]; }; + fishpond = derive2 { name="fishpond"; version="2.8.0"; sha256="04vl4cp0izghm7h4xk7x48lqkq0dpl47dkd068lva33jygwwpvcz"; depends=[abind GenomicRanges gtools IRanges jsonlite Matrix matrixStats qvalue S4Vectors SingleCellExperiment SummarizedExperiment svMisc]; }; + flagme = derive2 { name="flagme"; version="1.58.0"; sha256="1giqdl9prv04jp655a736gvc7xygld5v7k7vrz5c3vdrw4sgw628"; depends=[CAMERA gcspikelite gplots MASS SparseM xcms]; }; + flowAI = derive2 { name="flowAI"; version="1.32.0"; sha256="1bi13f8q7267lai71sl640w9zgd5a1iln5r4ri2dcskkwb2qxzkz"; depends=[changepoint flowCore ggplot2 knitr plyr RColorBrewer reshape2 rmarkdown scales]; }; + flowBeads = derive2 { name="flowBeads"; version="1.40.0"; sha256="0hqb67lq519dn5psn7maqs7lvkcr8a132i0zgni0zd29vsyhfg6l"; depends=[Biobase flowCore knitr rrcov xtable]; }; + flowBin = derive2 { name="flowBin"; version="1.38.0"; sha256="0cp000006z5x5a36dy9ish64ny82wi69k2biz7z64dishmnx0295"; depends=[BiocGenerics class flowCore flowFP limma snow]; }; + flowCHIC = derive2 { name="flowCHIC"; version="1.36.0"; sha256="0sfb1jd0cj4y3yzgkxzwgb7p569c9sisvv2j5146890c4qg44n75"; depends=[EBImage flowCore ggplot2 hexbin vegan]; }; + flowClean = derive2 { name="flowClean"; version="1.40.0"; sha256="0983l1anrnbrmrmkw527m4w39dgbxsmwrmbvpb99sbzxfvyjj00a"; depends=[bit changepoint flowCore sfsmisc]; }; + flowClust = derive2 { name="flowClust"; version="3.40.0"; sha256="1xg0hdxh0c1c1wc6d8gcynq8168hi61c3gjdf1223qvqwc39nsby"; depends=[Biobase BiocGenerics flowCore graph]; }; + flowCore = derive2 { name="flowCore"; version="2.14.0"; sha256="11aic1nzlw0gdpcpmky5jzljxgxcrimi29f0zl3yjvgb48qa88bd"; depends=[BH Biobase BiocGenerics cpp11 cytolib matrixStats Rcpp RProtoBufLib S4Vectors]; }; + flowCut = derive2 { name="flowCut"; version="1.12.0"; sha256="08n0rir4yhrq490assxzm9v70ydwcasnph0ib5kdz8iq4529an60"; depends=[Cairo e1071 flowCore flowDensity]; }; + flowCyBar = derive2 { name="flowCyBar"; version="1.38.0"; sha256="0zcq9qw583q4583k6d0lz01qzbsfvwnvwq3bymn9494n25p64ad1"; depends=[gplots vegan]; }; + flowDensity = derive2 { name="flowDensity"; version="1.36.1"; sha256="0w2msvkgm4j1jy397zxpcri77y1fip42yq20sd8d8z66qwmi1fg2"; depends=[car flowCore flowViz gplots polyclip]; }; + flowFP = derive2 { name="flowFP"; version="1.60.0"; sha256="0d6q253ix0x8s6x4mky6cpa43i3dmpgfwx0v215g0r3sjk8g337m"; depends=[Biobase BiocGenerics flowCore flowViz]; }; + flowGate = derive2 { name="flowGate"; version="1.2.0"; sha256="0liw8fyssd0x9isd92m4b1bv2p059c8x1mri8byrvc6la9lqf69m"; depends=[BiocManager dplyr flowCore flowWorkspace ggcyto ggplot2 purrr rlang shiny tibble]; }; + flowGraph = derive2 { name="flowGraph"; version="1.10.0"; sha256="1sjnr15qvz3yh455gs3y32xfq1cvzwr41rswmp9ampk4rkayh8nz"; depends=[data_table effsize furrr future ggiraph ggplot2 ggrepel gridExtra htmlwidgets igraph Matrix matrixStats purrr Rdpack stringi stringr visNetwork]; }; + flowMatch = derive2 { name="flowMatch"; version="1.38.0"; sha256="1vvww8ajjzlfqhsgf9if4zszmnv9ink9rnhw0bgw4p6j89j0mb1h"; depends=[Biobase flowCore Rcpp]; }; + flowMeans = derive2 { name="flowMeans"; version="1.62.0"; sha256="06n35c5fdkd3l8d5q8a23yslanirwhbf07b4f0zmf9a43zi642bv"; depends=[Biobase feature flowCore rrcov]; }; + flowMerge = derive2 { name="flowMerge"; version="2.50.0"; sha256="00b7vpqlc583jfkkxyx8hbc7y9yvbadizyinzsq6zj6szzja5myb"; depends=[feature flowClust flowCore foreach graph Rgraphviz rrcov snow]; }; + flowPeaks = derive2 { name="flowPeaks"; version="1.48.0"; sha256="1yzszarb14pw1lrqali5ws5l8zg0dksnn27x1mwxjb4cgqyazfl4"; depends=[]; }; + flowPloidy = derive2 { name="flowPloidy"; version="1.28.0"; sha256="1rpmarsfp2p96kfa713f74242mawgfa1xkgb5hnynrf3q54s6y1h"; depends=[car caTools flowCore knitr minpack_lm rmarkdown shiny]; }; + flowPlots = derive2 { name="flowPlots"; version="1.50.0"; sha256="1ldqgkmcrl1d021g5wcn366dgkjy221hiiyvs96il1zk7854rj4s"; depends=[]; }; + flowSpecs = derive2 { name="flowSpecs"; version="1.16.0"; sha256="0da4xy4cqfwha731k3wxw97bx2jjikc689w1r17rna8vky2kb8yc"; depends=[Biobase BiocGenerics BiocParallel flowCore ggplot2 reshape2 zoo]; }; + flowStats = derive2 { name="flowStats"; version="4.14.0"; sha256="1f7qawn9wb8221npnmmygmvi4w1rq5lb74j3vmfzcak5kyga5xck"; depends=[Biobase BiocGenerics clue cluster corpcor fda flowCore flowViz flowWorkspace KernSmooth ks lattice MASS mnormt ncdfFlow RColorBrewer rrcov]; }; + flowTime = derive2 { name="flowTime"; version="1.26.0"; sha256="137885mixx11wv05v258wgzppfqbars2kyzgh7m6kf38q8asx2yj"; depends=[dplyr flowCore magrittr plyr rlang tibble]; }; + flowTrans = derive2 { name="flowTrans"; version="1.54.0"; sha256="0qfvb3gyx919w5zxaj54apm9cd754klzq4nqd1q4w5z81abhxizz"; depends=[flowClust flowCore flowViz]; }; + flowVS = derive2 { name="flowVS"; version="1.34.0"; sha256="19jlpwxjif9nmci914pdfw9g6ik58aaswj7f3pvzisyby3zxxdqs"; depends=[flowCore flowStats flowViz]; }; + flowViz = derive2 { name="flowViz"; version="1.66.0"; sha256="1hn021p2220a47qzlya8qabc9xgmxk9gcs505m7wx6gx6ysdn418"; depends=[Biobase flowCore hexbin IDPmisc KernSmooth lattice latticeExtra MASS RColorBrewer]; }; + flowWorkspace = derive2 { name="flowWorkspace"; version="4.14.1"; sha256="0sbixbq99kmhh0ppdid1hqhb75yxb6gsm5pdz75y67i3pgwrv1sj"; depends=[BH Biobase BiocGenerics cpp11 cytolib data_table DelayedArray dplyr flowCore ggplot2 graph matrixStats ncdfFlow RBGL Rgraphviz Rhdf5lib RProtoBufLib S4Vectors scales XML]; }; + flowcatchR = derive2 { name="flowcatchR"; version="1.36.0"; sha256="0yp4bic5150in52dkzpf7x5w3hzbg058wbnanhh4p53mm9drwmy6"; depends=[abind BiocParallel colorRamps EBImage plotly shiny]; }; + fmcsR = derive2 { name="fmcsR"; version="1.44.0"; sha256="17il9mi1iagl474ia1lz0ajx1wq67jw5famkr1fmjlis8ymw8hnd"; depends=[BiocGenerics ChemmineR RUnit]; }; + fmrs = derive2 { name="fmrs"; version="1.12.0"; sha256="1qsp7rwpnhb0dmjhcjv2qwvyvrrdf1pnnigddq9k9s13lk6nd5ba"; depends=[survival]; }; + fobitools = derive2 { name="fobitools"; version="1.10.0"; sha256="13kd2bzm8w3h23d1289q3zc5c3fz8pchhp2c301qx4b24ip17s09"; depends=[clisymbols crayon dplyr fgsea ggplot2 ggraph magrittr ontologyIndex purrr RecordLinkage stringr textclean tictoc tidygraph tidyr vroom]; }; + frenchFISH = derive2 { name="frenchFISH"; version="1.14.0"; sha256="00z60wd14fzdcn3j9893j8n06w1ng4vl4wkwln6qnsi4pkbq7k09"; depends=[MCMCpack NHPoisson]; }; + frma = derive2 { name="frma"; version="1.54.0"; sha256="0m1d548shx0lwnhbv6sfg6qx777kd24nr4lhcrnkyag842rr6b97"; depends=[affy Biobase BiocGenerics DBI MASS oligo oligoClasses preprocessCore]; }; + frmaTools = derive2 { name="frmaTools"; version="1.54.0"; sha256="0zwi4fbdz0znav1ac00kz4lh63jksdp6vrz1mfmk2bgmwgrf7npx"; depends=[affy Biobase DBI preprocessCore]; }; + funtooNorm = derive2 { name="funtooNorm"; version="1.26.0"; sha256="1g6xja6n10m5pv3z6giriia278b8805f4gkq5dfmc7qxm946s0gy"; depends=[GenomeInfoDb IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest matrixStats minfi pls]; }; + gCrisprTools = derive2 { name="gCrisprTools"; version="2.8.0"; sha256="00zm8lj859xpd4dic7ac0834qvzpw82mfncz0sxj6vb7f9a247d9"; depends=[Biobase ComplexHeatmap ggplot2 limma rmarkdown RobustRankAggreg SummarizedExperiment]; }; + gDNAx = derive2 { name="gDNAx"; version="1.0.0"; sha256="0pgzd92d5izy92kp2y0wngm68vbg1sh5qqplwzgvszx530nm332b"; depends=[AnnotationDbi AnnotationHub BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges IRanges plotrix RColorBrewer Rsamtools S4Vectors SummarizedExperiment]; }; + gDR = derive2 { name="gDR"; version="1.0.0"; sha256="0zg5jdyd1n3dxrwg80cywxd47m5acj9c8cx98jjp530h62mypld9"; depends=[gDRcore gDRimport gDRutils]; }; + gDRcore = derive2 { name="gDRcore"; version="1.0.0"; sha256="1885pyvahzxy99kj8hjwa1lizh936rq2jbnh67nnn196miz55d4f"; depends=[BiocParallel BumpyMatrix checkmate data_table futile_logger gDRutils MultiAssayExperiment purrr S4Vectors stringr SummarizedExperiment]; }; + gDRimport = derive2 { name="gDRimport"; version="1.0.0"; sha256="1lwyn86c3ag3fg5fdd099mw9lkamydjh7jkrg9frz3a7r1s7x6j6"; depends=[assertthat BumpyMatrix checkmate CoreGx data_table futile_logger gDRutils magrittr MultiAssayExperiment openxlsx PharmacoGx readxl rio S4Vectors stringi SummarizedExperiment tibble XML yaml]; }; + gDRstyle = derive2 { name="gDRstyle"; version="1.0.0"; sha256="17s9670w15ms001nps92b9vqa792a4hqg7as5b8l6pqlbcdb4g7m"; depends=[BiocCheck BiocManager desc git2r lintr pkgbuild rcmdcheck remotes rjson withr yaml]; }; + gDRutils = derive2 { name="gDRutils"; version="1.0.0"; sha256="1wzl36zqkxhjr6n5g6cfgi3vn3p30wfpl83z2g18pzs312xx2sxh"; depends=[BiocParallel BumpyMatrix checkmate data_table drc jsonlite jsonvalidate magrittr MultiAssayExperiment S4Vectors stringr SummarizedExperiment]; }; + gaga = derive2 { name="gaga"; version="2.48.0"; sha256="1fqhzbf59z511z838zd1g4xnzw4a6xlpssgvqbjxgx22l7iqgy1c"; depends=[Biobase coda EBarrays mgcv]; }; + gage = derive2 { name="gage"; version="2.52.0"; sha256="0bm5hvy3cdcm46527w45mnnnk95qm28xzdk1m53615gh55ix4iy8"; depends=[AnnotationDbi GO_db graph KEGGREST]; }; + gaggle = derive2 { name="gaggle"; version="1.70.0"; sha256="16jajl03nf8fk29vd4bkj4f1156258skkw3p884ad946ifvabznd"; depends=[graph rJava RUnit]; }; + garfield = derive2 { name="garfield"; version="1.30.0"; sha256="01la01rgs3lfv29la514y5502chl62b66ji51nlmdb8zjhvfshaq"; depends=[]; }; + gatom = derive2 { name="gatom"; version="1.0.0"; sha256="0yl88gbn85mpv2n70wgmnbi3wgh8vjhxvzd064azf2g0yj50mqn8"; depends=[BioNet data_table GGally ggplot2 htmltools htmlwidgets igraph intergraph mwcsr network plyr pryr shinyCyJS sna XML]; }; + gcapc = derive2 { name="gcapc"; version="1.26.0"; sha256="0dlwp4ry8p0jrx3j2falz8inkqlvmlkri3x002gbrml4w6ghvjy1"; depends=[BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS matrixStats Rsamtools S4Vectors]; }; + gcatest = derive2 { name="gcatest"; version="2.2.0"; sha256="0hngq6fj86akm5fd4rzd31y06an4r00blcfwzb65b0wlqsg79gkv"; depends=[lfa]; }; + gcrma = derive2 { name="gcrma"; version="2.74.0"; sha256="07ina8w8p5bm382v452i2wpmv90gvgli393lsgp7xy0h9in7h6yg"; depends=[affy affyio Biobase BiocManager Biostrings XVector]; }; + gdsfmt = derive2 { name="gdsfmt"; version="1.38.0"; sha256="03qgiww523kijrkciln3fw3djn20rnvwz2j0i3p518h6fbl7vlpm"; depends=[]; }; + geNetClassifier = derive2 { name="geNetClassifier"; version="1.42.0"; sha256="1k61aka780xmf1vhqm6zvzjr2626hv71f8gp1s81az939crxlrqd"; depends=[Biobase e1071 EBarrays minet]; }; + gemini = derive2 { name="gemini"; version="1.16.0"; sha256="1c58kjvb9nps1ycgfkjv0i8rzkgv6q0rnz9av3yswvn9kah64gkd"; depends=[dplyr ggplot2 magrittr mixtools pbmcapply scales]; }; + gemma_R = derive2 { name="gemma.R"; version="2.0.0"; sha256="1kcms1bzvkfkf080hm0y8d61v62vnczbwmsincw39xmnnlhga905"; depends=[assertthat Biobase bit64 data_table digest glue httr jsonlite lubridate magrittr memoise rappdirs rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; }; + genArise = derive2 { name="genArise"; version="1.78.0"; sha256="16b1gsdfr1r3yzinfj934igdc8rsn237wf55wwv4vb4f5b1y35g0"; depends=[locfit tkrplot xtable]; }; + geneAttribution = derive2 { name="geneAttribution"; version="1.28.0"; sha256="0kkbxz3ig50afl1jhkxxlmsbzvkzqjv5mbankw1a9aqrj1dvnvn0"; depends=[BiocGenerics GenomeInfoDb GenomicFeatures GenomicRanges IRanges org_Hs_eg_db rtracklayer]; }; + geneClassifiers = derive2 { name="geneClassifiers"; version="1.26.0"; sha256="07vzzcb8apxr5vx4gfqk1li2x7265yp5mbkmj23z0sfs4idmz97m"; depends=[Biobase BiocGenerics]; }; + geneRecommender = derive2 { name="geneRecommender"; version="1.74.0"; sha256="1wpykqwld94grkza2f8fz7d0vlq64bvki3gcfyjz13xi5kb2s849"; depends=[Biobase]; }; + geneRxCluster = derive2 { name="geneRxCluster"; version="1.38.0"; sha256="08niw9hvg1r255aajn7q5m7gm4ihjiiqbs7wxkpxb5rr8cvx8nlc"; depends=[GenomicRanges IRanges]; }; + geneXtendeR = derive2 { name="geneXtendeR"; version="1.28.0"; sha256="0binfml9aa9fk2r0kj1w2dnmqlvw4s2s66vvrsqi1l566j19c668"; depends=[AnnotationDbi BiocStyle data_table dplyr GO_db networkD3 org_Rn_eg_db RColorBrewer rtracklayer SnowballC tm wordcloud]; }; + genefilter = derive2 { name="genefilter"; version="1.84.0"; sha256="0q80z872d3z1jy69b53qxzvmshf5zx4qssmp4gj7fwdpfxj9qqjw"; depends=[annotate AnnotationDbi Biobase MatrixGenerics survival]; }; + genefu = derive2 { name="genefu"; version="2.34.0"; sha256="0qynw8n6714pxwwfh33cqmp9lfp6jhz44l6pkkncd7zi1a64fmdv"; depends=[AIMS amap biomaRt iC10 impute limma mclust survcomp]; }; + geneplast = derive2 { name="geneplast"; version="1.28.0"; sha256="10z2w652x9b3n7mjhj99ig3sclrk4h4j7vlrgv21bwy3fx6h25f2"; depends=[ape data_table igraph snow]; }; + geneplotter = derive2 { name="geneplotter"; version="1.80.0"; sha256="0zvb84jlsvmr2dvwyy4xjqv353qrxpls0v2vz0nmj1q4m7lrpl1k"; depends=[annotate AnnotationDbi Biobase BiocGenerics lattice RColorBrewer]; }; + genoCN = derive2 { name="genoCN"; version="1.54.0"; sha256="124za7wdmv76xv34syaspvdya5zi624yar5mp4pjxbwr5dcyxpgk"; depends=[]; }; + genomation = derive2 { name="genomation"; version="1.34.0"; sha256="1vbpx187m5d5g307f4jiwyy1sw4jgj1s18622y3a458ixv540zkc"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridBase impute IRanges matrixStats plotrix plyr Rcpp readr reshape2 Rsamtools rtracklayer S4Vectors seqPattern]; }; + genomeIntervals = derive2 { name="genomeIntervals"; version="1.58.0"; sha256="029d53kbscvj39c7kpvd7w6fyyv324ymn38ar4l50g75j0hkj58r"; depends=[BiocGenerics GenomeInfoDb GenomicRanges intervals IRanges S4Vectors]; }; + genomes = derive2 { name="genomes"; version="3.32.0"; sha256="03ygc3xp7z1likl79lk01554y4f52rr4285vmjvdnvwmxx3zfk85"; depends=[curl readr]; }; + genomicInstability = derive2 { name="genomicInstability"; version="1.8.0"; sha256="14l7ixzp8wv9fb5pg5ldqsvn8c7dz8rjxrmy1pcc9qjk06m758ql"; depends=[checkmate mixtools SummarizedExperiment]; }; + gep2pep = derive2 { name="gep2pep"; version="1.22.0"; sha256="0m9s8jj6xknbidrzpl2xf9xaq5w72dk09ils7jkw86zsiscr8l20"; depends=[Biobase digest foreach GSEABase iterators repo rhdf5 XML]; }; + gespeR = derive2 { name="gespeR"; version="1.34.0"; sha256="1cpin91yha24maawpzqvxqir8s65v14rf1cl3ikiwcrwawq89f2a"; depends=[Biobase biomaRt cellHTS2 doParallel dplyr foreach ggplot2 glmnet Matrix reshape2]; }; + getDEE2 = derive2 { name="getDEE2"; version="1.12.0"; sha256="1h433vz9nrsr7v26davf8wmqz6z9qckqxi8884yfgr8234z9dkk8"; depends=[htm2txt SummarizedExperiment]; }; + geva = derive2 { name="geva"; version="1.10.0"; sha256="0gk8ypzhixjp0nx4ww7xi39fgmid0yng6h3qsh5bl198j4ib1r3r"; depends=[dbscan fastcluster matrixStats]; }; + gg4way = derive2 { name="gg4way"; version="1.0.1"; sha256="14008fhcx4cn5a4ajy32xvsambkmr3xgyaipqskagkblykz87lxw"; depends=[DESeq2 dplyr edgeR ggplot2 ggrepel glue janitor limma magrittr purrr rlang scales stringr tibble tidyr]; }; + ggbio = derive2 { name="ggbio"; version="1.50.0"; sha256="1chs58ifpwz4crcl5ymnb8ah3wf2jrn9lla3ljsywqiqn0r3i1am"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings biovizBase BSgenome ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra gtable Hmisc IRanges OrganismDbi reshape2 rlang Rsamtools rtracklayer S4Vectors scales SummarizedExperiment VariantAnnotation]; }; + ggcyto = derive2 { name="ggcyto"; version="1.30.0"; sha256="13zc5952drl187fl07v1nh6gv0g6ba11vxpxl4ghvavnknvi5phd"; depends=[data_table flowCore flowWorkspace ggplot2 gridExtra hexbin ncdfFlow plyr RColorBrewer rlang scales]; }; + ggkegg = derive2 { name="ggkegg"; version="1.0.6"; sha256="0pm3pd3apilc81lg5p2f1r6r6vfqcbfls29v8ihq11q64y9rply1"; depends=[AnnotationDbi BiocFileCache Cairo data_table dplyr GetoptLong ggplot2 ggraph igraph magick org_Hs_eg_db patchwork shadowtext stringr tibble tidygraph XML]; }; + ggmanh = derive2 { name="ggmanh"; version="1.6.0"; sha256="1j2qi5rp6z3442vs2r198swjz4mvf8lnvssf42jq86faan9jx10h"; depends=[gdsfmt ggplot2 ggrepel RColorBrewer rlang scales SeqArray]; }; + ggmsa = derive2 { name="ggmsa"; version="1.8.0"; sha256="1arznacrg8x8cq5k8gibnmkf1gc7bqxj5syvv0vbfibfplmschsi"; depends=[aplot Biostrings dplyr ggalt ggforce ggplot2 ggtree magrittr R4RNA RColorBrewer seqmagick statebins tidyr]; }; + ggsc = derive2 { name="ggsc"; version="1.0.2"; sha256="18s8ml11ikw9f223fv4glz7c0hizdvqks0z0nz7vbfbhc43nv2p5"; depends=[cli dplyr ggplot2 Rcpp RcppArmadillo RcppParallel rlang scattermore Seurat SingleCellExperiment SummarizedExperiment tibble tidydr tidyr yulab_utils]; }; + ggspavis = derive2 { name="ggspavis"; version="1.8.0"; sha256="0zfxd3gw15dd0l3l49g4f275vl0bfllfn27y48ldv7yy608bzk26"; depends=[ggplot2 ggside SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; + ggtree = derive2 { name="ggtree"; version="3.10.0"; sha256="12w2l1q0c5aznd5fls04wvgsmjidqhr1kkqj4gajz1abj9f49cqf"; depends=[ape aplot cli dplyr ggfun ggplot2 magrittr purrr rlang scales tidyr tidytree treeio yulab_utils]; }; + ggtreeDendro = derive2 { name="ggtreeDendro"; version="1.4.0"; sha256="0gnznbv4959mp76wdz9ma64xina97mb7ndzg2vjni0cr9p1prrxc"; depends=[ggplot2 ggtree tidytree]; }; + ggtreeExtra = derive2 { name="ggtreeExtra"; version="1.12.0"; sha256="0q8k81mq5q9fym4zyrkzapgyww23lkxpkyj2s9r1y0ciclk90zdc"; depends=[cli ggnewscale ggplot2 ggtree magrittr rlang tidytree]; }; + girafe = derive2 { name="girafe"; version="1.54.0"; sha256="09sax6vqfrzj17q6szzszxn1qhhsv4jkryv3sbijxbk45scmjrj4"; depends=[Biobase BiocGenerics Biostrings genomeIntervals intervals IRanges Rsamtools S4Vectors ShortRead]; }; + glmGamPoi = derive2 { name="glmGamPoi"; version="1.14.0"; sha256="1qc3f1spzkcjk95b07jpxgrjiwmlamwwx6mlhml4lgzy5qby7dpw"; depends=[beachmat BiocGenerics DelayedArray DelayedMatrixStats HDF5Array MatrixGenerics matrixStats Rcpp RcppArmadillo rlang SingleCellExperiment SummarizedExperiment vctrs]; }; + glmSparseNet = derive2 { name="glmSparseNet"; version="1.20.0"; sha256="0akcp07bngsrwfl1siv2bgxlz1gxqpcmdxg9nka508884v7rxs3r"; depends=[biomaRt digest dplyr forcats futile_logger futile_options ggplot2 glmnet glue httr Matrix MultiAssayExperiment readr reshape2 stringr SummarizedExperiment survminer]; }; + globalSeq = derive2 { name="globalSeq"; version="1.30.0"; sha256="1b0qjcwrm8svck7ykz9h2vrcc06cag2dczxlzd13arqhr4d1a6p7"; depends=[]; }; + globaltest = derive2 { name="globaltest"; version="5.56.0"; sha256="14kcsx1gynl0fijq67qb5zvfxn4yqj8809p7535y455rd0vddp5r"; depends=[annotate AnnotationDbi Biobase survival]; }; + gmapR = derive2 { name="gmapR"; version="1.44.0"; sha256="08l0937r0zzb8n2h7c8ydia9c63rng4pw63pbwm4i9d8cbzp0hcs"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; + gmoviz = derive2 { name="gmoviz"; version="1.14.0"; sha256="070r948gm4i5l4mnskl2agmfjpihvjpw2zgdji2z2dp0lh5d4bwn"; depends=[BiocGenerics Biostrings circlize colorspace ComplexHeatmap GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridBase IRanges pracma Rsamtools rtracklayer S4Vectors]; }; + goProfiles = derive2 { name="goProfiles"; version="1.64.0"; sha256="14h8phx5qp8xismvf290bja4wv4g71k24iiv2nmqsac5myr402kw"; depends=[AnnotationDbi Biobase CompQuadForm GO_db stringr]; }; + goSTAG = derive2 { name="goSTAG"; version="1.26.0"; sha256="0pnqg3yki19xv3icqqayw75wpq3d5cx0z97qspmh9c3i5p05341f"; depends=[AnnotationDbi biomaRt GO_db memoise]; }; + goSorensen = derive2 { name="goSorensen"; version="1.4.0"; sha256="1q6isry70rczq4dj5ibwf9xzw7vkcws57h9p6dr16l2ij6b524dx"; depends=[clusterProfiler GO_db goProfiles org_Hs_eg_db stringr]; }; + goTools = derive2 { name="goTools"; version="1.76.0"; sha256="1qfl4617zwrl7nd56q1flzhzh9shhcs49m8s3327bpz0xpvc56vc"; depends=[AnnotationDbi GO_db]; }; + goseq = derive2 { name="goseq"; version="1.54.0"; sha256="0waw5hhxh8yab8fqw9gnd3l39s6wkmp8690rhs4llarpqz6ssrhk"; depends=[AnnotationDbi BiasedUrn BiocGenerics geneLenDataBase GO_db mgcv]; }; + gpls = derive2 { name="gpls"; version="1.74.0"; sha256="1z6mdqcjwqby2hv8x9380q9qsm9y2kqaqln9bqxcrsxj3bpgwsj0"; depends=[]; }; + gpuMagic = derive2 { name="gpuMagic"; version="1.18.0"; sha256="0x5d94imcxg4m5whyhmlxgixxcn4qmh3jfm7kplhi78fb6abmrql"; depends=[BiocGenerics Deriv DescTools digest pryr Rcpp stringr]; }; + granulator = derive2 { name="granulator"; version="1.10.0"; sha256="0sv8r5sqxay3f0g59kgabrdjzv0j7czs10sm2c9k18fjs6cn08h1"; depends=[cowplot dplyr dtangle e1071 epiR ggplot2 ggplotify limSolve magrittr MASS nnls pheatmap purrr rlang tibble tidyr]; }; + graper = derive2 { name="graper"; version="1.18.0"; sha256="0ghr5dfm7iv9hhjlmzcshi0g3w5m4iikqrm3sb7kxnb364gpj27b"; depends=[BH cowplot ggplot2 Matrix matrixStats Rcpp RcppArmadillo]; }; + graph = derive2 { name="graph"; version="1.80.0"; sha256="0p7g7ykpkngbs3h1dsackfy93l8lvc301lr64ffsiaw60gllcx01"; depends=[BiocGenerics]; }; + graphite = derive2 { name="graphite"; version="1.48.0"; sha256="1h8j10jx02zsxs6rzids3gy4xchdhgzkifa5grrfbn8faf9ycy2n"; depends=[AnnotationDbi graph httr purrr rappdirs rlang]; }; + groHMM = derive2 { name="groHMM"; version="1.36.0"; sha256="15ibdbpj7vqypxfnp2w06w9lync11z3azzss6s97xhadkgsbw4vq"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS rtracklayer S4Vectors]; }; + gsean = derive2 { name="gsean"; version="1.22.0"; sha256="15rargfrhgrxaad4sza6w80mlgmrwq18yzhi99282rzm1s7rxd5r"; depends=[fgsea PPInfer]; }; + gtrellis = derive2 { name="gtrellis"; version="1.34.0"; sha256="022wn0l2wfizlz6d5plkphjsjbmxw2wcvxrzr4vanczjzzyxv5c5"; depends=[circlize GenomicRanges GetoptLong IRanges]; }; + gwascat = derive2 { name="gwascat"; version="2.34.0"; sha256="028n8v1pgkr1q5s9wslql8ayk1cbx6a9a2rjka9pdwz6rq1iyagy"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges readr S4Vectors snpStats VariantAnnotation]; }; + gwasurvivr = derive2 { name="gwasurvivr"; version="1.20.0"; sha256="0wdp5zvf0iawfc2y16hh5p9cag86m8g1sd6q0l0wha5i1w84yzcd"; depends=[GWASTools matrixStats SNPRelate SummarizedExperiment survival VariantAnnotation]; }; + h5vc = derive2 { name="h5vc"; version="2.36.0"; sha256="0h3vffm1yadryxqjz6x7lapx9ysmmmqvc6m1ayw3cfzswkqfd86z"; depends=[abind BatchJobs BiocParallel Biostrings GenomeInfoDb GenomicRanges ggplot2 gridExtra h5vcData IRanges reshape rhdf5 Rhtslib Rsamtools S4Vectors]; }; + hapFabia = derive2 { name="hapFabia"; version="1.44.0"; sha256="0mmpwbpi2z8cj7xssxrwbyzcr47szywf0bm9d9vnwkl0z6awmxfz"; depends=[Biobase fabia]; }; + hca = derive2 { name="hca"; version="1.10.0"; sha256="1lq97wzgygsh6m351hy8swmh58rbwd1h70qmw3w3msd5wm28v22a"; depends=[BiocFileCache digest dplyr DT httr jsonlite miniUI readr shiny tibble tidyr]; }; + heatmaps = derive2 { name="heatmaps"; version="1.26.0"; sha256="1b52a0rlziaxwbsxmvd43g4ilr5n1vx6gz4azsnlp5hpmw524mdq"; depends=[BiocGenerics Biostrings EBImage GenomeInfoDb GenomicRanges IRanges KernSmooth Matrix plotrix RColorBrewer]; }; + hermes = derive2 { name="hermes"; version="1.6.0"; sha256="1l68gz8kwsc61zji4ack4ayca0m0ls4ky2lyiab6zs01ywibfj3r"; depends=[assertthat Biobase BiocGenerics biomaRt checkmate circlize ComplexHeatmap DESeq2 dplyr edgeR EnvStats forcats GenomicRanges ggfortify ggplot2 ggrepel IRanges lifecycle limma magrittr matrixStats MultiAssayExperiment purrr R6 Rdpack rlang S4Vectors SummarizedExperiment tidyr]; }; + hiAnnotator = derive2 { name="hiAnnotator"; version="1.36.0"; sha256="072nhfbzwkl26nrzrfgph56ygjwyldj1qfviv7xj3bpqcz6fhq9y"; depends=[BSgenome dplyr foreach GenomicRanges ggplot2 iterators rtracklayer scales]; }; + hiReadsProcessor = derive2 { name="hiReadsProcessor"; version="1.38.0"; sha256="0dkg4hq43radr7yhyh9hhjyib3220rc0s1v4kzxaxxl05ylj92ds"; depends=[BiocGenerics BiocParallel Biostrings dplyr GenomicAlignments GenomicRanges hiAnnotator readxl sonicLength]; }; + hicVennDiagram = derive2 { name="hicVennDiagram"; version="1.0.0"; sha256="0xfw0sszpwmh0g6vpb8f1y84p5bg9mwnfypb9n4vwqhxnb12w5qb"; depends=[ComplexUpset eulerr ggplot2 htmlwidgets InteractionSet reshape2 rtracklayer S4Vectors svglite]; }; + hierGWAS = derive2 { name="hierGWAS"; version="1.32.0"; sha256="0g8lkymr18jfvswwi0qfv44vwzpf3pzjs61zlqn67yr6jpsak34g"; depends=[fastcluster fmsb glmnet]; }; + hierinf = derive2 { name="hierinf"; version="1.20.0"; sha256="1ahb8ijyghz10zq71dqfscmwbwb3i20b3ai5l3nyja78616viprf"; depends=[fmsb glmnet]; }; + hipathia = derive2 { name="hipathia"; version="3.2.0"; sha256="1lq0xcwjvgcm8l2kzaxf44ng1h57i63xylyv813pq9szma3zl8bx"; depends=[AnnotationHub coin DelayedArray dplyr ggplot2 ggpubr igraph limma matrixStats MetBrewer MultiAssayExperiment preprocessCore reshape2 S4Vectors servr SummarizedExperiment tibble visNetwork]; }; + hmdbQuery = derive2 { name="hmdbQuery"; version="1.22.0"; sha256="0x50m4i7drygj340j5jbcfv6ddal8fab2afdrr5wzax8xn1ygmm9"; depends=[S4Vectors XML]; }; + hoodscanR = derive2 { name="hoodscanR"; version="1.0.0"; sha256="1gyzb6vfzg95yc7w05z5apgbyk6al2k4mr2m83k0p19niy9v7ryd"; depends=[circlize ComplexHeatmap ggplot2 knitr RANN Rcpp rlang rmarkdown scico SpatialExperiment SummarizedExperiment]; }; + hopach = derive2 { name="hopach"; version="2.62.0"; sha256="1v0rqk7757l8samyqd05dpplg6pdrss4nk7fi2hwfkj1vf5wz14s"; depends=[Biobase BiocGenerics cluster]; }; + hpar = derive2 { name="hpar"; version="1.44.0"; sha256="19jdy0q3larl5lxjzqlnyynq9rya56fyvf1yx9pwsyag1c148z08"; depends=[ExperimentHub]; }; + hummingbird = derive2 { name="hummingbird"; version="1.12.0"; sha256="1hpbdmdymlnpdqnpq3y4iw9i44vgf399862xw50sjhm7r4d6p3hh"; depends=[GenomicRanges IRanges Rcpp SummarizedExperiment]; }; + hypeR = derive2 { name="hypeR"; version="2.0.0"; sha256="0axkk4qbj29g2f332qmi0wmsbkh9p3sykn7l1r9wamf46dfc1m8z"; depends=[BiocStyle dplyr ggforce ggplot2 htmltools httr igraph kableExtra magrittr msigdbr openxlsx purrr R6 reactable reshape2 rlang rmarkdown scales shiny stringr visNetwork]; }; + hyperdraw = derive2 { name="hyperdraw"; version="1.54.0"; sha256="1lgfpw9f7095lgk46gdpxq3z52c24xw4ajl7yid3pcgw19bfcgk5"; depends=[graph hypergraph Rgraphviz]; }; + hypergraph = derive2 { name="hypergraph"; version="1.74.0"; sha256="16bjjfzcndjfqsywzw2cn551fgqlnll2gi975w0qqxhkh3jssgmi"; depends=[graph]; }; + iASeq = derive2 { name="iASeq"; version="1.46.0"; sha256="0y4lq8s9dr9jjsipfdf126g27065k5hg2vvj3q72jwqmkhymdw1m"; depends=[]; }; + iBBiG = derive2 { name="iBBiG"; version="1.46.0"; sha256="15m83fy8l3qbwbg35935q4w1kbwv0ki4pwdikxfaqs99xx915ajs"; depends=[ade4 biclust xtable]; }; + iBMQ = derive2 { name="iBMQ"; version="1.42.0"; sha256="1hc6ki98b8n0x46psjz46lk8rdlm5rj7plq8fd6fv9z0xix898iq"; depends=[Biobase ggplot2]; }; + iCARE = derive2 { name="iCARE"; version="1.30.0"; sha256="0qh63swkzsyi8cdabil49mbgcz9ry26vmjkrpc0jcqyqjsihxs27"; depends=[gtools Hmisc plotrix]; }; + iCNV = derive2 { name="iCNV"; version="1.22.0"; sha256="11d0pmn0ywqg2gvwjn7yv3xdi9i1fpfpnbzh31jws0629fw5v3h9"; depends=[CODEX data_table dplyr fields ggplot2 rlang tidyr truncnorm]; }; + iCOBRA = derive2 { name="iCOBRA"; version="1.30.0"; sha256="1f0j10wha60vv592vsnv2pcqwz7g2fkld8pnar9rpwwb7qd0wcnf"; depends=[dplyr DT ggplot2 limma markdown reshape2 ROCR scales shiny shinyBS shinydashboard UpSetR]; }; + iCheck = derive2 { name="iCheck"; version="1.32.0"; sha256="1x4f5wacsgjl4lq93gav0ljc5xgqra65dzrw9y1zzw5cm4z33wyq"; depends=[affy Biobase GeneSelectMMD gplots limma lmtest lumi MASS preprocessCore randomForest rgl scatterplot3d]; }; + iChip = derive2 { name="iChip"; version="1.56.0"; sha256="07z5lcfy89mmsjnnx44lwfds3bim7z050sr4fdzy2sixbfbypxzy"; depends=[limma]; }; + iClusterPlus = derive2 { name="iClusterPlus"; version="1.38.0"; sha256="0p56w6431jg921416dkyiykccvr7alq6x6r1gcx5d9hkcpyncks1"; depends=[]; }; + iGC = derive2 { name="iGC"; version="1.32.0"; sha256="0gvb1cvhmcz4vnhlb2s0nsp71jr98irdqb5mchd5rpk0jysg24dr"; depends=[data_table plyr]; }; + iNETgrate = derive2 { name="iNETgrate"; version="1.0.0"; sha256="1zagf0i7akv40jf7inypbxrzdmjg2n26lckqcmiajivb7kfzv1pp"; depends=[BiocStyle caret GenomicRanges glmnet gplots Homo_sapiens igraph matrixStats minfi Pigengene Rfast SummarizedExperiment survival tidyr tidyselect WGCNA]; }; + iPAC = derive2 { name="iPAC"; version="1.46.0"; sha256="0bn7lfg6mp38y9n10fcdcqak9l4hi3prcmky64gxclbl5cqnan68"; depends=[Biostrings gdata multtest scatterplot3d]; }; + iPath = derive2 { name="iPath"; version="1.8.0"; sha256="09jkl14wgzq0zfj74vivavyz00lx8zxyml62zf3nk8nmfwpckj2k"; depends=[BiocParallel ggplot2 ggpubr matrixStats mclust Rcpp RcppArmadillo survival survminer]; }; + iSEE = derive2 { name="iSEE"; version="2.14.0"; sha256="0khysw2nj83sn2vgzjn76qrqfkiqwn5yc11c6x5l2zpllvzfrcj4"; depends=[BiocGenerics circlize colourpicker ComplexHeatmap DT ggplot2 ggrepel igraph mgcv rintrojs S4Vectors shiny shinyAce shinydashboard shinyjs shinyWidgets SingleCellExperiment SummarizedExperiment vipor viridisLite]; }; + iSEEde = derive2 { name="iSEEde"; version="1.0.0"; sha256="15926dl2ricrfa43pknm1xi0lp4808grih3d27i9hnlxzxvhbhlw"; depends=[DESeq2 edgeR iSEE S4Vectors shiny SummarizedExperiment]; }; + iSEEhex = derive2 { name="iSEEhex"; version="1.4.0"; sha256="1frjayfr9rmwf2ank9n8slbkzcyk90azism88262gkypxk2g7npr"; depends=[ggplot2 hexbin iSEE shiny SummarizedExperiment]; }; + iSEEhub = derive2 { name="iSEEhub"; version="1.4.0"; sha256="16889vcdjbd2sxshqxzkdnza1x269dm2h12985qrbkk1ja3bdpzw"; depends=[AnnotationHub BiocManager DT ExperimentHub iSEE rintrojs S4Vectors shiny shinydashboard shinyjs SingleCellExperiment SummarizedExperiment]; }; + iSEEindex = derive2 { name="iSEEindex"; version="1.0.0"; sha256="1qp3nnxn020frf4gjx1327dl60d2gl06qfallaaxcas14jgj7p1d"; depends=[BiocFileCache DT iSEE paws_storage rintrojs shiny shinydashboard shinyjs SingleCellExperiment stringr SummarizedExperiment urltools]; }; + iSEEpathways = derive2 { name="iSEEpathways"; version="1.0.0"; sha256="0avi7g37px8p1h0wp7q63hnp47gph0yhc694p0gfzl24kvnmshgf"; depends=[ggplot2 iSEE S4Vectors shiny shinyWidgets SummarizedExperiment]; }; + iSEEu = derive2 { name="iSEEu"; version="1.14.0"; sha256="0xg6b9cpxjacmhjbzmjql2ywjfq2g441v2b7f2cj4gqx6flajv70"; depends=[colourpicker DT ggplot2 IRanges iSEE iSEEhex S4Vectors shiny shinyAce SingleCellExperiment SummarizedExperiment]; }; + iSeq = derive2 { name="iSeq"; version="1.54.0"; sha256="1mc6xl5jyvllq9w6k67rz10hapg86fw0jwjcy4f5m8p5w12lh3rg"; depends=[]; }; + iasva = derive2 { name="iasva"; version="1.20.0"; sha256="1q5z3qgrv16nlqars0ziwyb116bykcd5jkkqm2lvxbw6yyam6pk2"; depends=[BiocParallel cluster irlba SummarizedExperiment]; }; + ibh = derive2 { name="ibh"; version="1.50.0"; sha256="1jppg7r2xckw6pki3vj0j46v19ryhqsr05rk43vjfz876myprnkd"; depends=[simpIntLists]; }; + icetea = derive2 { name="icetea"; version="1.20.0"; sha256="0lrf0mdmqyfr5zmi10rrgn31g63sh4a2wi6svi406pi656z4rzhr"; depends=[BiocGenerics BiocParallel Biostrings csaw DESeq2 edgeR GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges limma Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm6_ensGene VariantAnnotation]; }; + ideal = derive2 { name="ideal"; version="1.26.0"; sha256="0k1wxfww3dgfpfllpb1xxn1yjwmrkwf907njg9l85gm997smvdf9"; depends=[AnnotationDbi base64enc BiocParallel DESeq2 dplyr DT GenomicRanges ggplot2 ggrepel GO_db goseq GOstats gplots heatmaply IHW IRanges knitr limma pcaExplorer pheatmap plotly rentrez rintrojs rlang rmarkdown S4Vectors shiny shinyAce shinyBS shinydashboard stringr SummarizedExperiment topGO UpSetR]; }; + idiogram = derive2 { name="idiogram"; version="1.78.0"; sha256="06x2h5m5i72jp9r7f5c40cqblb5mxapka4vcih6z0638xalkay74"; depends=[annotate Biobase plotrix]; }; + idpr = derive2 { name="idpr"; version="1.12.0"; sha256="0q7vk77s9q75a6k3rhcg06ywp611dyfi9hsgr4rzrwi1qfr943ma"; depends=[Biostrings dplyr ggplot2 jsonlite magrittr plyr rlang]; }; + idr2d = derive2 { name="idr2d"; version="1.16.0"; sha256="06vvc590i73zkm1scq3zgyvc1qdx8s7h0w12v27axacw551639n0"; depends=[dplyr futile_logger GenomeInfoDb GenomicRanges ggplot2 idr IRanges magrittr reticulate scales stringr]; }; + igvR = derive2 { name="igvR"; version="1.22.0"; sha256="0cjilipjcjkgs0gc9lwdzlr2qrv3qyd0vv67awb18algcfsl93mk"; depends=[BiocGenerics BrowserViz GenomicAlignments GenomicRanges httpuv httr RColorBrewer rtracklayer VariantAnnotation]; }; + illuminaio = derive2 { name="illuminaio"; version="0.44.0"; sha256="15i47b995dqh0dlg60lss5vgj31as3cwhb2z5fqbnknx3lj7s6rl"; depends=[base64]; }; + imcRtools = derive2 { name="imcRtools"; version="1.8.0"; sha256="06hca7ri6qigpr2wbiy7pwfxpx915dkccnsiyd5n76awv5rww8w2"; depends=[abind BiocNeighbors BiocParallel concaveman cytomapper data_table distances dplyr DT EBImage ggplot2 ggraph igraph magrittr MatrixGenerics pheatmap readr RTriangle S4Vectors scuttle sf SingleCellExperiment SpatialExperiment stringr SummarizedExperiment tidygraph tidyselect viridis vroom]; }; + immunoClust = derive2 { name="immunoClust"; version="1.34.0"; sha256="1lm62kzf5w1z52ii92mrh6hq6py7b32rrxxwgbw0iqw2329nwqdz"; depends=[flowCore lattice]; }; + immunotation = derive2 { name="immunotation"; version="1.10.0"; sha256="10k5gsi1ijddyp61xsc4301r264ns5hshsf88vi4scv6lhha8s69"; depends=[curl ggplot2 maps ontologyIndex readr rlang rvest stringr tidyr xml2]; }; + impute = derive2 { name="impute"; version="1.76.0"; sha256="0q7mnx99ndna1r2r0v7jc3w8ly8qw33flwbgkcvrfhk6dzvbn4pl"; depends=[]; }; + infercnv = derive2 { name="infercnv"; version="1.18.1"; sha256="1d9in3hs2n91pv498715d3qi82c7xsnm42vnzgfyz096zjghgp7a"; depends=[ape argparse BiocGenerics caTools coda coin digest doParallel dplyr edgeR fastcluster fitdistrplus foreach futile_logger future ggplot2 gplots gridExtra HiddenMarkov igraph Matrix parallelDist phyclust RANN RColorBrewer reshape2 rjags Seurat SingleCellExperiment SummarizedExperiment tidyr]; }; + infinityFlow = derive2 { name="infinityFlow"; version="1.12.0"; sha256="0p41b1y22sjhxx8q1qzhgb7wr0wsbazlyn7cg9ipz8m9v5xg7idf"; depends=[Biobase flowCore generics gtools matlab pbapply png raster uwot xgboost]; }; + intansv = derive2 { name="intansv"; version="1.42.0"; sha256="0i542gpjibppnvq5afnp9i68jvab6k6w7xj7gdy4jkck6gm12g71"; depends=[BiocGenerics GenomicRanges ggbio IRanges plyr]; }; + interacCircos = derive2 { name="interacCircos"; version="1.12.0"; sha256="08szyplv7b4xl6jq71ghaknc8fyr2h16lzllc4w8svkhainkvsbw"; depends=[htmlwidgets plyr RColorBrewer]; }; + interactiveDisplay = derive2 { name="interactiveDisplay"; version="1.40.0"; sha256="0w81c5kc48gjavln50ysgr3vaf8s4fb6632ckzb1q225j9ik2gia"; depends=[AnnotationDbi BiocGenerics Category ggplot2 gridSVG interactiveDisplayBase plyr RColorBrewer reshape2 shiny XML]; }; + interactiveDisplayBase = derive2 { name="interactiveDisplayBase"; version="1.40.0"; sha256="14cw90qlp8y4k0fs7xim8qvhzwbb8sn334mc72fkxg1h4bs8bxjw"; depends=[BiocGenerics DT shiny]; }; + ipdDb = derive2 { name="ipdDb"; version="1.20.0"; sha256="15m020ilwa6jwj4x4xji7rrb4x7h5q2sm5xsgbipryx7hzvwz1am"; depends=[AnnotationDbi AnnotationHub assertthat Biostrings DBI GenomicRanges IRanges RSQLite]; }; + isobar = derive2 { name="isobar"; version="1.48.0"; sha256="13b3a5q3nn8x7aqbg4mjwigxh3wcblnhiq18fxpzxd89kgklf1f7"; depends=[Biobase biomaRt distr ggplot2 plyr]; }; + isomiRs = derive2 { name="isomiRs"; version="1.30.0"; sha256="1m72a7m0rn0q33nv9gb193gv8f4wrhxrjr837b4am7shv6lklj48"; depends=[AnnotationDbi assertive_sets Biobase BiocGenerics broom cluster cowplot DEGreport DESeq2 dplyr GenomicRanges GGally ggplot2 gplots gridExtra gtools IRanges limma RColorBrewer readr reshape rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; }; + iterClust = derive2 { name="iterClust"; version="1.24.0"; sha256="0k2hcc7g4ynd9jrk8f286y6gwc4bfs4bnfs8qpj2i8zamwdaldng"; depends=[Biobase cluster]; }; + iterativeBMA = derive2 { name="iterativeBMA"; version="1.60.0"; sha256="04awfmpk4vi09wk256l0fsy40pn79kjfkj8k2ri8zjgjng8yf5ns"; depends=[Biobase BMA leaps]; }; + iterativeBMAsurv = derive2 { name="iterativeBMAsurv"; version="1.60.0"; sha256="1i4kz882lzilz5gsxcw036hxvx3kh5v2xhqbaj2mrhh3lc8a1s89"; depends=[BMA leaps survival]; }; + ivygapSE = derive2 { name="ivygapSE"; version="1.24.0"; sha256="0zrysavdj8af8c2k4mncyvy7355fdw4xnz6h8i79l650qi8hmlrd"; depends=[ggplot2 hwriter plotly S4Vectors shiny SummarizedExperiment survival survminer UpSetR]; }; + karyoploteR = derive2 { name="karyoploteR"; version="1.28.0"; sha256="0jr9lp250s9066hh40vxb6c6yhdd8yrnk0zklwylkf3jpbdgl621"; depends=[AnnotationDbi bamsignals bezier biovizBase digest GenomeInfoDb GenomicFeatures GenomicRanges IRanges memoise regioneR Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; + katdetectr = derive2 { name="katdetectr"; version="1.4.0"; sha256="0i1aq7binhlqbknpwcpj4nn4dh3x6i9brg4yvgcz13rd1ak08p9z"; depends=[Biobase BiocParallel BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 changepoint changepoint_np checkmate dplyr GenomeInfoDb GenomicRanges ggplot2 ggtext IRanges maftools plyranges Rdpack rlang S4Vectors tibble tidyr VariantAnnotation]; }; + kebabs = derive2 { name="kebabs"; version="1.36.0"; sha256="17lilr40qdz8vjsb7m4il2q44rd6pskw8bhzxybq8rhd83c15753"; depends=[apcluster Biostrings e1071 IRanges kernlab LiblineaR Matrix Rcpp S4Vectors XVector]; }; + keggorthology = derive2 { name="keggorthology"; version="2.54.0"; sha256="0nb6q4l8hzbfjs2njdqwbn5g2vayfc41bbxf8dsfy1njm3r1km29"; depends=[AnnotationDbi DBI graph hgu95av2_db]; }; + lapmix = derive2 { name="lapmix"; version="1.68.0"; sha256="1kw4jqjfkpk2rhdxgypmamkmzl9w5csasncw4kbw1vjzbjzihfyl"; depends=[Biobase]; }; + ldblock = derive2 { name="ldblock"; version="1.32.0"; sha256="1caxzc99kga2c90m2ydmnvcd8lfp0igmmickpl0ikrhwjlbfnc0p"; depends=[BiocGenerics httr Matrix rlang]; }; + lefser = derive2 { name="lefser"; version="1.12.1"; sha256="0aywwinp4wwwa12rq60gpfk5gn28zyimayxakgj4lhfwjk0byz8m"; depends=[coin ggplot2 MASS S4Vectors SummarizedExperiment]; }; + lemur = derive2 { name="lemur"; version="1.0.5"; sha256="1079s7m749fsg37wmwq57i7hf7ba8mz64m404sybajal8k0p4j20"; depends=[BiocGenerics BiocNeighbors DelayedMatrixStats glmGamPoi harmony HDF5Array irlba limma Matrix MatrixGenerics matrixStats Rcpp RcppArmadillo rlang S4Vectors SingleCellExperiment SummarizedExperiment vctrs]; }; + les = derive2 { name="les"; version="1.52.0"; sha256="00xay71lzqh59bzpm5y7y6i8p39m5dag0qzpd51jkbkbwhdg95f6"; depends=[boot fdrtool gplots RColorBrewer]; }; + levi = derive2 { name="levi"; version="1.20.0"; sha256="0p5hmj0jskwag9ay1b3njf25ajns2317dkv2l9z56xqlgnr4lycz"; depends=[colorspace dplyr DT ggplot2 httr igraph knitr RColorBrewer Rcpp reshape2 rmarkdown shiny shinydashboard shinyjs testthat xml2]; }; + lfa = derive2 { name="lfa"; version="2.2.0"; sha256="1xrwvw7227znd1h7426k8l86197yc24b4v608issh5fqglmhljns"; depends=[corpcor RSpectra]; }; + limma = derive2 { name="limma"; version="3.58.1"; sha256="01byjnhhjyxk9x871rk8bgqq6lkp1a6dylqbdphpzp88b1jf2f9m"; depends=[statmod]; }; + limmaGUI = derive2 { name="limmaGUI"; version="1.78.0"; sha256="1psx743jn36hw1np6k613wajs17rhnyny4rs0cp297z3wgv2ra86"; depends=[limma R2HTML tkrplot xtable]; }; + lineagespot = derive2 { name="lineagespot"; version="1.6.0"; sha256="0yvw47ha9g1sywici5dkyb90d2sw0ypcddn1x2gls6y45l2wh1i6"; depends=[data_table httr MatrixGenerics stringr SummarizedExperiment VariantAnnotation]; }; + lionessR = derive2 { name="lionessR"; version="1.16.0"; sha256="0pm4jn5jzv38d6cfxn1cjw03wm47il308jr01labfw2ya2ris24z"; depends=[S4Vectors SummarizedExperiment]; }; + lipidr = derive2 { name="lipidr"; version="2.16.0"; sha256="1jrs44553d3d7sljgkxpwnaqv1ym6j9rhwv6i764744pmijhbmbh"; depends=[data_table dplyr fgsea forcats ggplot2 imputeLCMD limma magrittr rlang ropls S4Vectors SummarizedExperiment tidyr]; }; + lisaClust = derive2 { name="lisaClust"; version="1.10.1"; sha256="1cmqvslb0f46b01d40zh3f7m95f4szhs44wwhiv0n9ppibx13mgk"; depends=[BiocGenerics BiocParallel class concaveman data_table dplyr ggplot2 pheatmap purrr S4Vectors SingleCellExperiment SpatialExperiment spatstat_explore spatstat_geom spatstat_random spicyR SummarizedExperiment tidyr]; }; + lmdme = derive2 { name="lmdme"; version="1.44.0"; sha256="1k0ilpy29kn2v7md0ayylg8az3dj8jrjgb0jv1vbx28abfqri02s"; depends=[limma pls stemHypoxia]; }; + loci2path = derive2 { name="loci2path"; version="1.22.0"; sha256="0im1s5wngnvkza62fh1qpp64fq5p4y556c1251v26230kppdmkas"; depends=[BiocParallel data_table GenomicRanges pheatmap RColorBrewer S4Vectors wordcloud]; }; + logicFS = derive2 { name="logicFS"; version="2.22.0"; sha256="138w02qhmshd72ljh0mq7y6rg9yk818b74milmawvil4fx9k2dvq"; depends=[LogicReg mcbiopi survival]; }; + lpNet = derive2 { name="lpNet"; version="2.34.0"; sha256="1wf2n7k4rdj17dinq8kcm0add9n5xbd6zyvngfwgfr25x5mqg1dn"; depends=[lpSolve]; }; + lpsymphony = derive2 { name="lpsymphony"; version="1.30.0"; sha256="1946wlw9zvyxdd99rs2rliks54ff5dkibavxd48aj7cqjsjh6b7g"; depends=[]; }; + lumi = derive2 { name="lumi"; version="2.54.0"; sha256="0iwkag84w1sc703jcdfx0h799hlchdiqvlps8g8lwmil5b0xlsw5"; depends=[affy annotate AnnotationDbi Biobase DBI GenomicFeatures GenomicRanges KernSmooth lattice MASS methylumi mgcv nleqslv preprocessCore RSQLite]; }; + m6Aboost = derive2 { name="m6Aboost"; version="1.8.0"; sha256="0sssf37pjnn4iafhf6jkcms00lzwmxb8qbzn76spm135fkyljm7k"; depends=[adabag Biostrings BSgenome dplyr ExperimentHub GenomicRanges IRanges rtracklayer S4Vectors]; }; + mBPCR = derive2 { name="mBPCR"; version="1.56.0"; sha256="03h1wxjhvk19rrl9h8hpp78c9srxablv9sx6vjm868w12az4x0qh"; depends=[Biobase GWASTools oligoClasses]; }; + mCSEA = derive2 { name="mCSEA"; version="1.22.0"; sha256="1icvd7v8zhp420wq3776lixf7hzjwyfhc9h3micl4cg8hxz0r8kc"; depends=[biomaRt fgsea GenomicFeatures GenomicRanges ggplot2 Gviz Homo_sapiens IRanges limma mCSEAdata S4Vectors SummarizedExperiment]; }; + maCorrPlot = derive2 { name="maCorrPlot"; version="1.72.0"; sha256="0gpj4r9fnv4dlqkzyq47n0n9dwzd9d6ry46vzxlkdjla811wz3pb"; depends=[lattice]; }; + maPredictDSC = derive2 { name="maPredictDSC"; version="1.40.0"; sha256="099pmf3jdpnsvcg46q09pr2qdh0znzr2dcrlbh61ys1yh12vplf5"; depends=[affy AnnotationDbi caret class e1071 gcrma hgu133plus2_db limma LungCancerACvsSCCGEO MASS ROC ROCR]; }; + maSigPro = derive2 { name="maSigPro"; version="1.74.0"; sha256="02i2gnfj54z8j4ir93ambf25wz609aqh22bkwid0wca895nrarx8"; depends=[Biobase MASS mclust venn]; }; + macat = derive2 { name="macat"; version="1.76.0"; sha256="1xmlh1bnhaxp2zjimrhyzz0ldl2sv4j0lrrvqdhlk8jbm5j4hzy8"; depends=[annotate Biobase]; }; + made4 = derive2 { name="made4"; version="1.76.0"; sha256="03fhiszlmjh8nvz3gppf45r9kpcjrdb601ar17c4f2aygjpkf0cg"; depends=[ade4 Biobase gplots RColorBrewer scatterplot3d SummarizedExperiment]; }; + maftools = derive2 { name="maftools"; version="2.18.0"; sha256="025wlqnx13ldzyrf72mrfj492d62i4xyjbhpmgavgld0jwfmr3ga"; depends=[data_table DNAcopy RColorBrewer Rhtslib survival zlibbioc]; }; + magpie = derive2 { name="magpie"; version="1.2.0"; sha256="0qn62kllwd2ip2iszvxwr8088n5r0krnja80gw1xhfzs6s2gxcbi"; depends=[AnnotationDbi aod BiocParallel DESeq2 GenomicFeatures GenomicRanges IRanges Matrix matrixStats openxlsx RColorBrewer reshape2 Rsamtools rtracklayer S4Vectors TRESS]; }; + magrene = derive2 { name="magrene"; version="1.4.0"; sha256="0y3q5pdvcp1ns00ycmqilf9fbgl57j9917vck7anib9sqkbdncgf"; depends=[BiocParallel]; }; + makecdfenv = derive2 { name="makecdfenv"; version="1.78.0"; sha256="0mggcw0390i1y2wn4k8570gjmbsx6hbipi8fkhz2zj9icsx89x1l"; depends=[affy affyio Biobase zlibbioc]; }; + mapscape = derive2 { name="mapscape"; version="1.26.0"; sha256="157xi3r5fjsby2affd5yq112i6w80g8q3xiv4s7xg6zy57309f4k"; depends=[base64enc htmlwidgets jsonlite stringr]; }; + mariner = derive2 { name="mariner"; version="1.2.0"; sha256="12zj4y6fy38r6iiz7gp9z9sdz99ixy43is9hwp4l026q401ckdqh"; depends=[abind assertthat BiocGenerics BiocManager BiocParallel colourvalues data_table dbscan DelayedArray GenomeInfoDb GenomicRanges glue HDF5Array InteractionSet IRanges magrittr plotgardener plyranges progress purrr RColorBrewer rhdf5 rlang S4Vectors strawr SummarizedExperiment]; }; + marr = derive2 { name="marr"; version="1.12.0"; sha256="1q9xbyc9wsrhpirddnhpnw0z33cpjzj3689vgpnxdkx9s64jr1ld"; depends=[dplyr ggplot2 magrittr Rcpp rlang S4Vectors SummarizedExperiment]; }; + marray = derive2 { name="marray"; version="1.80.0"; sha256="1gj4mdbni5fk2z3zrk2cnhy610ihhhwjb9l1crglkklwxhkqlkvd"; depends=[limma]; }; + martini = derive2 { name="martini"; version="1.22.0"; sha256="0ffpbn93jlig43m0gzfi0vgqr6kn013xbsfgd8wlpg34saz3x1y4"; depends=[igraph Matrix memoise Rcpp RcppEigen snpStats]; }; + maser = derive2 { name="maser"; version="1.20.0"; sha256="0h7x1fyfvnjc30w9ydbnlqijz58q2kcxv4yy784rf4adsrdhwh45"; depends=[BiocGenerics data_table dplyr DT GenomeInfoDb GenomicRanges ggplot2 Gviz IRanges reshape2 rtracklayer]; }; + maskBAD = derive2 { name="maskBAD"; version="1.46.0"; sha256="11kr4ali92scgsfm6757ylmvcvxsxvgh7pdlj77bwprgvsl53x5y"; depends=[affy gcrma]; }; + massiR = derive2 { name="massiR"; version="1.38.0"; sha256="16v0fydncmaa4xqg2m6mg1h5n9b3fc3r9mmxl1ip7ylr836v2g5l"; depends=[Biobase cluster diptest gplots]; }; + mastR = derive2 { name="mastR"; version="1.2.0"; sha256="13sbkqdv6g65mzhzz9hbwbn8yx20sqx9c34c0ly06kb5vknacykk"; depends=[AnnotationDbi Biobase dplyr edgeR ggplot2 ggpubr GSEABase limma Matrix msigdb org_Hs_eg_db patchwork SeuratObject SingleCellExperiment SummarizedExperiment tidyr]; }; + matchBox = derive2 { name="matchBox"; version="1.44.0"; sha256="185idvl851zsdh10f6dz8sff5anxq8apmf7awg9vq0j8mrpd149i"; depends=[]; }; + matter = derive2 { name="matter"; version="2.4.0"; sha256="0a6fs90vakkc6zqz6i99cs7al9vabv2wzmlp5ywsnn9b8z56j886"; depends=[biglm BiocGenerics BiocParallel digest irlba Matrix ProtGenerics]; }; + mbQTL = derive2 { name="mbQTL"; version="1.2.0"; sha256="01j7mrjdgf5pv8599a08wq2bnpzxg7k6jm7s1vpnragssp4ml7jh"; depends=[broom dplyr ggplot2 MatrixEQTL metagenomeSeq pheatmap readxl stringr tidyr]; }; + mbkmeans = derive2 { name="mbkmeans"; version="1.18.0"; sha256="1x7azijfs28iz2w40b9hnpgwh4jxgihl8cj6h91b2wgz79sq649l"; depends=[beachmat benchmarkme BiocParallel ClusterR DelayedArray Matrix Rcpp RcppArmadillo Rhdf5lib S4Vectors SingleCellExperiment SummarizedExperiment]; }; + mdp = derive2 { name="mdp"; version="1.22.0"; sha256="0zislz6737kddhcz5chns12p8aaqybmg7gyww1n1f3zhy1m9rfzx"; depends=[ggplot2 gridExtra]; }; + mdqc = derive2 { name="mdqc"; version="1.64.0"; sha256="0q6ig9qdf2s9329wysrvgh13yq5c7n76as2c3mahqm78xb0mpplf"; depends=[cluster MASS]; }; + megadepth = derive2 { name="megadepth"; version="1.12.0"; sha256="0g9d4q6vh2ys1la15fqgbc4ckfbjbzzaqa49x9liqrhpnrp59vc3"; depends=[cmdfun dplyr fs GenomicRanges magrittr readr xfun]; }; + memes = derive2 { name="memes"; version="1.10.0"; sha256="11c7smsggxrg3v0awkx9j4gy8gr986yncqcqr01xjldzvz0b2r25"; depends=[Biostrings cmdfun dplyr GenomicRanges ggplot2 magrittr matrixStats patchwork processx purrr readr rlang tibble tidyr universalmotif usethis xml2]; }; + meshes = derive2 { name="meshes"; version="1.28.0"; sha256="0l1l679qjpf5i8d86rmlziam1x67pnymj1iqcmbci20rqr415i3j"; depends=[AnnotationDbi AnnotationHub DOSE enrichplot GOSemSim MeSHDbi yulab_utils]; }; + meshr = derive2 { name="meshr"; version="2.8.0"; sha256="10ss1ydyxwiijq3212lswzwfhy1d5mdmgbjfaj8gdnvznnxfzs6l"; depends=[BiocGenerics BiocStyle Category fdrtool knitr markdown MeSHDbi rmarkdown RSQLite S4Vectors]; }; + messina = derive2 { name="messina"; version="1.38.0"; sha256="09c5jrxis9iza5lp7m3k4q4vwy4jlvl6vzd52nvayx8mbk5jcf2f"; depends=[foreach ggplot2 plyr Rcpp survival]; }; + metaCCA = derive2 { name="metaCCA"; version="1.30.0"; sha256="1mxybpdqmg9w3q36g0xwx4vl006v5nfgj7cmfjm9r1khka8vij13"; depends=[]; }; + metaMS = derive2 { name="metaMS"; version="1.38.0"; sha256="0l3fi4gp77a8vbhi3k5syaz0ycr9f3ch0dkqripbq8sw076cdh2r"; depends=[BiocGenerics CAMERA Matrix robustbase xcms]; }; + metaSeq = derive2 { name="metaSeq"; version="1.42.0"; sha256="1xvlyg83jd0ykb3c3kvm05s9919bsmc6v324n3da231c2vpyzl0n"; depends=[NOISeq Rcpp snow]; }; + metabCombiner = derive2 { name="metabCombiner"; version="1.12.0"; sha256="1iiizafp002xdy4lyj6h26izn1jmcydrw0h61c4i6n60fmaksjdq"; depends=[caret dplyr matrixStats mgcv rlang S4Vectors tidyr]; }; + metabinR = derive2 { name="metabinR"; version="1.4.0"; sha256="0i9kg4ca7l66zljydl9v6aa07rzwp3nq9cagm8dniq54qm59s93l"; depends=[rJava]; }; + metabolomicsWorkbenchR = derive2 { name="metabolomicsWorkbenchR"; version="1.12.0"; sha256="1fgciy2phpvv1jki47cijpcdfjpw92isj424wxn1ld3r7q4kn4b3"; depends=[data_table httr jsonlite MultiAssayExperiment struct SummarizedExperiment]; }; + metabomxtr = derive2 { name="metabomxtr"; version="1.36.0"; sha256="130zh8r7cpgwp15nk98ymj734q24aa6aakqyvxra3nmn82d0fi4w"; depends=[Biobase BiocParallel Formula ggplot2 multtest optimx plyr]; }; + metagene2 = derive2 { name="metagene2"; version="1.18.0"; sha256="1w4k4hhs28n2yjp2i96550zfiz6f679nkad3n2i4gm54yz42z4a0"; depends=[BiocParallel data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges magrittr purrr R6 reshape2 Rsamtools rtracklayer]; }; + metagenomeSeq = derive2 { name="metagenomeSeq"; version="1.43.0"; sha256="1m19qkwrbfr4yhbr1izfjka3brn1qasqql6alczv55l5h52m4s4b"; depends=[Biobase foreach glmnet gplots limma Matrix matrixStats RColorBrewer Wrench]; }; + metahdep = derive2 { name="metahdep"; version="1.60.0"; sha256="0hd91zd99c0dkzw419p3m8dyy1fm6ivg9ba654acqz5zxiav1agv"; depends=[]; }; + metapod = derive2 { name="metapod"; version="1.10.1"; sha256="05cy3xvj78n2p9l2pxfys7aczr51gm2ywprn4qmzr7ppb6rq5f66"; depends=[Rcpp]; }; + metapone = derive2 { name="metapone"; version="1.8.0"; sha256="14038jfkyh2hgqdmii3nfwfj7idy1sqm5ac3lczn480lzf90frjg"; depends=[BiocParallel fdrtool fgsea fields ggplot2 ggrepel markdown]; }; + methInheritSim = derive2 { name="methInheritSim"; version="1.24.0"; sha256="11sgw15dc0dl4wx3z5wwsk4qdccd91hjg66i1rwhcf1v08xw2w8w"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges methylKit msm S4Vectors]; }; + methimpute = derive2 { name="methimpute"; version="1.24.0"; sha256="0sdvxbkivkpsg22s4vxhds9z8m5nxrsn8khcv04jm3cf8x1zzvqn"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges ggplot2 IRanges minpack_lm Rcpp reshape2]; }; + methrix = derive2 { name="methrix"; version="1.16.0"; sha256="1yydmp3iaxbny25mfr3018f1kjvqi6zhrh0c8hvzznbkvyxvgkn2"; depends=[BSgenome data_table DelayedArray DelayedMatrixStats GenomicRanges ggplot2 HDF5Array IRanges matrixStats rtracklayer S4Vectors SummarizedExperiment]; }; + methylCC = derive2 { name="methylCC"; version="1.16.0"; sha256="1grb6d83gi4583jzg12wqkgr1dp2bxysdwd4lirzvnvhpwnfmbhw"; depends=[Biobase bsseq bumphunter dplyr FlowSorted_Blood_450k genefilter GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IRanges magrittr minfi plyranges quadprog S4Vectors]; }; + methylGSA = derive2 { name="methylGSA"; version="1.20.0"; sha256="037wfcdva8jqfrmy7kkdzp74izw2lgnawhg5576p66qvp1fwf2gi"; depends=[AnnotationDbi BiocParallel clusterProfiler ggplot2 GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 missMethyl org_Hs_eg_db reactome_db RobustRankAggreg shiny stringr]; }; + methylInheritance = derive2 { name="methylInheritance"; version="1.26.0"; sha256="0aiv9cy2fg5vgnkihqyyp9476d36n7spyfbvq8cnhhhka7q771iy"; depends=[BiocParallel GenomicRanges ggplot2 gridExtra IRanges methylKit rebus S4Vectors]; }; + methylKit = derive2 { name="methylKit"; version="1.28.0"; sha256="0y45wa45kblm2g3nylvybvyfc34sjlynhsz3dirhs1favb83sdiv"; depends=[data_table emdbook fastseg GenomeInfoDb GenomicRanges gtools IRanges KernSmooth limma mclust mgcv qvalue R_utils Rcpp Rhtslib Rsamtools rtracklayer S4Vectors zlibbioc]; }; + methylMnM = derive2 { name="methylMnM"; version="1.40.0"; sha256="0nbn6xdv8wcs7bxaym2nc3ryhjj574pamm66yc3blx413q5wfsnq"; depends=[edgeR statmod]; }; + methylPipe = derive2 { name="methylPipe"; version="1.36.0"; sha256="1ayy6jf0jrd2lk16j3a7k3qnm8h8w76bkb7gsvx1bbchsk050880"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicRanges gplots Gviz IRanges marray Rsamtools S4Vectors SummarizedExperiment]; }; + methylclock = derive2 { name="methylclock"; version="1.8.0"; sha256="1njym21ndva58kg7gqfw1d7ri4421rilflg1kn8hbgyayjrlhcl1"; depends=[Biobase devtools dplyr dynamicTreeCut ExperimentHub ggplot2 ggpmisc ggpubr gridExtra impute methylclockData minfi PerformanceAnalytics planet preprocessCore quadprog Rcpp RPMM tibble tidyr tidyverse]; }; + methylscaper = derive2 { name="methylscaper"; version="1.10.0"; sha256="1akigwx3k0xdnq70219qg69nvmshbryq0z6glq1dz2wic4gghdlw"; depends=[BiocParallel Biostrings data_table Rfast seqinr seriation shiny shinyFiles shinyjs SummarizedExperiment]; }; + methylumi = derive2 { name="methylumi"; version="2.48.0"; sha256="1vracrvy56kk3hc9midxdaxhad2zf1lspn0zzxjjbsyzx3r0ip0n"; depends=[annotate AnnotationDbi Biobase BiocGenerics FDb_InfiniumMethylation_hg19 genefilter GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 illuminaio IRanges lattice matrixStats minfi reshape2 S4Vectors scales SummarizedExperiment]; }; + mfa = derive2 { name="mfa"; version="1.24.0"; sha256="0h8qsl62zqn0d2mwxqn246khdfay85alf6p39yp94qv90kvgp62f"; depends=[Biobase coda dplyr ggmcmc ggplot2 magrittr MCMCglmm MCMCpack Rcpp tibble]; }; + mgsa = derive2 { name="mgsa"; version="1.50.0"; sha256="130d3k6m78k67qikwzisabqdmb9s2z5d2dypv8ia0lhyp77yk8b9"; depends=[gplots]; }; + miQC = derive2 { name="miQC"; version="1.10.0"; sha256="131pnlkk72b4x42aij8bwq8rknfxk0hz1lj6rlvgy2w95fbs12g0"; depends=[flexmix ggplot2 SingleCellExperiment]; }; + miRLAB = derive2 { name="miRLAB"; version="1.32.0"; sha256="18rhi4bk1rxnsdbrgnyqdrs4h4nbvb7ndvz4rz8mgj1f2nnr1fc5"; depends=[Category ctc dplyr energy entropy glmnet GOstats gplots Hmisc httr impute InvariantCausalPrediction limma org_Hs_eg_db pcalg RCurl stringr SummarizedExperiment TCGAbiolinks]; }; + miRNAmeConverter = derive2 { name="miRNAmeConverter"; version="1.30.0"; sha256="1ndd80xsq7qjgmn738nf5vhz68mxni1waah6iwd57iiyl45fkj29"; depends=[AnnotationDbi DBI miRBaseVersions_db reshape2]; }; + miRNApath = derive2 { name="miRNApath"; version="1.62.0"; sha256="1rmhx8qb9lk67icacsl5klvl16rkdlpln1pahdjn2rcnn0j4ry59"; depends=[]; }; + miRNAtap = derive2 { name="miRNAtap"; version="1.36.0"; sha256="1jc9xlhfp8pcnrrrgf7pdzgfz6sl617czv6mp74ydsnl0yc33hnj"; depends=[AnnotationDbi DBI plyr RSQLite sqldf stringr]; }; + miRcomp = derive2 { name="miRcomp"; version="1.32.0"; sha256="04qpmxj75fh7g67vw5vp79aj5b4n4ppm228ykah5pnpk0swf4kpm"; depends=[Biobase KernSmooth miRcompData]; }; + mia = derive2 { name="mia"; version="1.10.0"; sha256="044spfxsf7xijnbh0933cwdkycmg05zsfqhbx5pkfajysh6w5cxp"; depends=[ape BiocGenerics BiocParallel Biostrings bluster DECIPHER decontam DelayedArray DelayedMatrixStats DirichletMultinomial dplyr IRanges MASS MatrixGenerics MultiAssayExperiment rlang S4Vectors scater scuttle SingleCellExperiment SummarizedExperiment tibble tidyr TreeSummarizedExperiment vegan]; }; + miaSim = derive2 { name="miaSim"; version="1.8.0"; sha256="1k53d71jpm3a8vd5f5b0s2v7d722k3jvay2g782p28i73q77scxk"; depends=[deSolve MatrixGenerics poweRlaw S4Vectors SummarizedExperiment TreeSummarizedExperiment]; }; + miaViz = derive2 { name="miaViz"; version="1.10.0"; sha256="1i6ihx6r33lg0cw7k0mhzygsglfzwvmvwi49ilc32lh3lflqqksp"; depends=[ape BiocGenerics BiocParallel DelayedArray DirichletMultinomial dplyr ggnewscale ggplot2 ggraph ggrepel ggtree mia purrr rlang S4Vectors scater SingleCellExperiment SummarizedExperiment tibble tidygraph tidyr tidytree TreeSummarizedExperiment viridis]; }; + microRNA = derive2 { name="microRNA"; version="1.60.0"; sha256="0sn8a95yjvr7vn2imvymlfpldqrsd25c7p1q64ihhkvz4kbjb1zv"; depends=[Biostrings]; }; + microSTASIS = derive2 { name="microSTASIS"; version="1.2.0"; sha256="0rm202xdjr24521sw004w7fk0p325dwxiykyx90d6dif9xjrg94w"; depends=[BiocParallel ggplot2 ggside rlang stringr TreeSummarizedExperiment]; }; + microbiome = derive2 { name="microbiome"; version="1.24.0"; sha256="0xmkwf7v89nwlpjrzqxv87lbsn6za99v7f0yxkgzfk5n6fadrf05"; depends=[Biostrings compositions dplyr ggplot2 phyloseq reshape2 Rtsne scales tibble tidyr vegan]; }; + microbiomeDASim = derive2 { name="microbiomeDASim"; version="1.16.0"; sha256="1wc15hymh7vzdxd6pxwdlxikpppdyi1pgjc0vmj7wa3y4d11v0pk"; depends=[Biobase ggplot2 MASS Matrix metagenomeSeq mvtnorm pbapply phyloseq tmvtnorm]; }; + microbiomeExplorer = derive2 { name="microbiomeExplorer"; version="1.12.0"; sha256="0byy4r5fhvhwnlxnhb0gbiskjq2q3gj3ibh4anlxpzv55q4shrsd"; depends=[Biobase biomformat broom car DESeq2 dplyr DT forcats heatmaply knitr limma lubridate magrittr matrixStats metagenomeSeq plotly purrr RColorBrewer readr reshape2 rlang rmarkdown shiny shinycssloaders shinydashboard shinyjs shinyWidgets stringr tibble tidyr vegan]; }; + microbiomeMarker = derive2 { name="microbiomeMarker"; version="1.8.0"; sha256="15qsal51b29ryxvjvfqwx7xh525cg3scv7kn6fh9rwdpi97hx7ff"; depends=[ALDEx2 ANCOMBC Biobase BiocGenerics BiocParallel biomformat Biostrings caret coin ComplexHeatmap DESeq2 dplyr edgeR ggplot2 ggsignif ggtree IRanges limma magrittr MASS metagenomeSeq multtest patchwork phyloseq plotROC pROC purrr rlang S4Vectors tibble tidyr tidytree vegan yaml]; }; + midasHLA = derive2 { name="midasHLA"; version="1.10.0"; sha256="02971sczxayglv6fa5yc8gx9w8r6vxsyc29qv1is7jj0yr14dq27"; depends=[assertthat broom dplyr formattable HardyWeinberg kableExtra knitr magrittr MultiAssayExperiment qdapTools rlang S4Vectors stringi SummarizedExperiment tibble]; }; + miloR = derive2 { name="miloR"; version="1.10.0"; sha256="1hnvw9x0xwjb0br4yvzkzn73nvm8p3j3wmcw8jrid105j0fz6vcj"; depends=[BiocGenerics BiocNeighbors BiocParallel BiocSingular cowplot dplyr edgeR ggbeeswarm ggplot2 ggraph ggrepel gtools igraph irlba limma Matrix matrixStats patchwork RColorBrewer S4Vectors SingleCellExperiment stringr SummarizedExperiment tibble tidyr]; }; + mimager = derive2 { name="mimager"; version="1.26.0"; sha256="00qwk5gbrgwsz1hdn3kj3pc8jn20ljlcz43cqan8x9ffkhj4axhh"; depends=[affy affyPLM Biobase BiocGenerics DBI gtable oligo oligoClasses preprocessCore S4Vectors scales]; }; + mina = derive2 { name="mina"; version="1.10.0"; sha256="07znbjz4rcs478crp3yyawg06g6z8181arj1kmhs70id687lh0l8"; depends=[apcluster biganalytics bigmemory foreach ggplot2 Hmisc MCL parallelDist plyr Rcpp RcppArmadillo RcppParallel reshape2 RSpectra stringr]; }; + minet = derive2 { name="minet"; version="3.60.0"; sha256="17v2x7cyw74h0zfsz33pyl1kqk976pdzw7mrgprz9l7w5120niw5"; depends=[infotheo]; }; + minfi = derive2 { name="minfi"; version="1.48.0"; sha256="13lldzj68vmmmrp5fi2rfxbchbivaa1scq56hl0v9mxxicw72a0x"; depends=[beanplot Biobase BiocGenerics BiocParallel Biostrings bumphunter data_table DelayedArray DelayedMatrixStats genefilter GenomeInfoDb GenomicRanges GEOquery HDF5Array illuminaio IRanges lattice limma MASS mclust nlme nor1mix preprocessCore quadprog RColorBrewer reshape S4Vectors siggenes SummarizedExperiment]; }; + mirIntegrator = derive2 { name="mirIntegrator"; version="1.32.0"; sha256="1wpdyk97ca0jw8k6n11cy1imy2y3s15hvdv068sp87bapjzfj2fi"; depends=[AnnotationDbi ggplot2 graph org_Hs_eg_db Rgraphviz ROntoTools]; }; + mirTarRnaSeq = derive2 { name="mirTarRnaSeq"; version="1.10.0"; sha256="0lfx1vp689nvmjz2c5sfdy8ww36nrcnjmliv0d7440bc1rk4lywl"; depends=[assertthat caTools corrplot data_table dplyr ggplot2 MASS pheatmap pscl purrr R_utils reshape2 viridis]; }; + missMethyl = derive2 { name="missMethyl"; version="1.36.0"; sha256="1nv4rm5pbx0s7m5zak3jzmwz4pkf8ghkj0ckdcsnmw3k364ny856"; depends=[AnnotationDbi BiasedUrn Biobase BiocGenerics GenomicRanges GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b4_hg19 IlluminaHumanMethylationEPICmanifest IRanges limma methylumi minfi org_Hs_eg_db ruv S4Vectors statmod stringr SummarizedExperiment]; }; + missRows = derive2 { name="missRows"; version="1.22.0"; sha256="13xfzfi6xvcjb7i3dvd606vs1l2dwj2srxfqs26prc6qz064qjpy"; depends=[ggplot2 gtools MultiAssayExperiment plyr S4Vectors]; }; + mistyR = derive2 { name="mistyR"; version="1.10.0"; sha256="128ggdhsm9d1sslahvzzhqb73s16vf7474sxc9lcajy5l4m3rw7k"; depends=[assertthat caret deldir digest distances dplyr filelock furrr ggplot2 purrr R_utils ranger readr ridge rlang rlist stringr tibble tidyr tidyselect withr]; }; + mitch = derive2 { name="mitch"; version="1.14.0"; sha256="0i64zzr04zpl3rcm93sl5bhwfam3n378p4frgqrgypm21aycisx2"; depends=[beeswarm echarts4r GGally ggplot2 gplots gridExtra kableExtra knitr MASS plyr reshape2 rmarkdown]; }; + mitoClone2 = derive2 { name="mitoClone2"; version="1.8.1"; sha256="18zkfnz099p4xh8qkxc2xj75ndraby8ycz6dfq281ly6inyd58r6"; depends=[deepSNV GenomicRanges ggplot2 pheatmap reshape2 Rhtslib S4Vectors]; }; + mixOmics = derive2 { name="mixOmics"; version="6.26.0"; sha256="0ifi89s611kblncnpvsrbl6sq2zi36binz63njrhya9wkyaxj6pc"; depends=[BiocParallel corpcor dplyr ellipse ggplot2 ggrepel gridExtra igraph lattice MASS matrixStats rARPACK RColorBrewer reshape2 tidyr]; }; + mnem = derive2 { name="mnem"; version="1.18.0"; sha256="1p6da0jl3c9yx68bzc41z3xry8vf399fzinf01c20yfql4g17c07"; depends=[cluster data_table e1071 flexclust ggplot2 graph lattice Linnorm matrixStats naturalsort Rcpp RcppEigen Rgraphviz snowfall tsne wesanderson]; }; + moanin = derive2 { name="moanin"; version="1.10.0"; sha256="1k9m0q1bpbdpb2hm57y0lygx1mj0q1xh30x9sz7s5q9fpnabybrh"; depends=[ClusterR edgeR limma MASS matrixStats NMI reshape2 S4Vectors SummarizedExperiment topGO viridis zoo]; }; + mogsa = derive2 { name="mogsa"; version="1.36.0"; sha256="0byq6cq9hs4ryhhx6i1ll8cr3i1072ifp9v98p3xvcgfaqig6ydw"; depends=[Biobase BiocGenerics cluster corpcor genefilter gplots graphite GSEABase svd]; }; + monaLisa = derive2 { name="monaLisa"; version="1.8.0"; sha256="1gk1h6z84ybmxl856mmyvxm7434aq1sh8bbl35if7awzkj436hkr"; depends=[BiocGenerics BiocParallel Biostrings BSgenome circlize ComplexHeatmap GenomeInfoDb GenomicRanges glmnet IRanges S4Vectors stabs SummarizedExperiment TFBSTools vioplot XVector]; }; + monocle = derive2 { name="monocle"; version="2.30.0"; sha256="0i1qnmiaf3gf8955nlqzd81xzg4siliq154k699jmsz0fyyykia1"; depends=[Biobase BiocGenerics biocViews cluster combinat DDRTree dplyr fastICA ggplot2 HSMMSingleCell igraph irlba leidenbase limma MASS Matrix matrixStats pheatmap plyr proxy RANN Rcpp reshape2 Rtsne slam stringr tibble VGAM viridis]; }; + mosaics = derive2 { name="mosaics"; version="2.40.0"; sha256="1si5f9w7jfdnfspnwghny78gdc4xbbq1gaiia2yl43v9236fk6q5"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges lattice MASS Rcpp Rsamtools S4Vectors]; }; + mosbi = derive2 { name="mosbi"; version="1.8.0"; sha256="1vpkkc4c35plalah133fy5wfga8j2qrl53q7086x40812mpmc1yc"; depends=[akmbiclust BH biclust fabia igraph isa2 QUBIC RColorBrewer Rcpp RcppParallel xml2]; }; + motifStack = derive2 { name="motifStack"; version="1.46.0"; sha256="10hmqwkysifd59as9zx00p3gj595lwj30ywn9pqb1920q6f5mx2i"; depends=[ade4 Biostrings ggplot2 htmlwidgets TFBSTools XML]; }; + motifbreakR = derive2 { name="motifbreakR"; version="2.16.0"; sha256="02i3hkffhhsbzmn97mv8wc2px5caq9xnp45z0l53dp1jxbmms1h0"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges Gviz IRanges matrixStats MotifDb motifStack rtracklayer S4Vectors stringr SummarizedExperiment TFMPvalue VariantAnnotation]; }; + motifcounter = derive2 { name="motifcounter"; version="1.26.0"; sha256="0ng283g3shm2aahyjn29mxv3f30xfncc8gg99wchzcrlm5cgwpy7"; depends=[Biostrings]; }; + motifmatchr = derive2 { name="motifmatchr"; version="1.24.0"; sha256="13kkg9xpyvgqpsaz5f96pd43i8a45jrbnzqmax793zkv4ai8p16j"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp RcppArmadillo Rsamtools S4Vectors SummarizedExperiment TFBSTools]; }; + mpra = derive2 { name="mpra"; version="1.24.0"; sha256="0zadlalkswj0793b66fs6cxincnhn245xdkz32ngcahqdfiv7kbq"; depends=[BiocGenerics limma S4Vectors scales statmod SummarizedExperiment]; }; + msImpute = derive2 { name="msImpute"; version="1.12.0"; sha256="1akrn8k8k1s69gq2gpn1dw206cjd5xry3q2cfvhmxca8nhs7zpb0"; depends=[data_table dplyr FNN limma matrixStats mvtnorm pdist reticulate scran softImpute tidyr]; }; + msPurity = derive2 { name="msPurity"; version="1.28.0"; sha256="14klzkpii892yn08kg9hwkwiprfrpfgn4dj52dyw8k4k30vri3gw"; depends=[DBI dbplyr doSNOW dplyr fastcluster foreach ggplot2 magrittr mzR plyr Rcpp reshape2 RSQLite stringr]; }; + msa = derive2 { name="msa"; version="1.34.0"; sha256="1csa8j64xrfr6kdnndr3876bplclca9wf6ydy9kg97xsjq7gz8q5"; depends=[BiocGenerics Biostrings IRanges Rcpp S4Vectors]; }; + msgbsR = derive2 { name="msgbsR"; version="1.26.0"; sha256="0m88mpr74r531gs8nlicr5bp8d4qyj7449mdn6pzkqpvx10ncrf6"; depends=[BSgenome easyRNASeq edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr R_utils Rsamtools S4Vectors SummarizedExperiment]; }; + mslp = derive2 { name="mslp"; version="1.4.0"; sha256="1i4afr1kvbwpp4xnijhdqhmn4cy82b8j97by50gwm63696g7qr6k"; depends=[data_table doRNG fmsb foreach magrittr org_Hs_eg_db pROC randomForest RankProd]; }; + msmsEDA = derive2 { name="msmsEDA"; version="1.40.0"; sha256="0xxjkr3x654n61q2yda09cghvssyx4ml9g22gfzfhbzjp8j7pm2c"; depends=[gplots MASS MSnbase RColorBrewer]; }; + msmsTests = derive2 { name="msmsTests"; version="1.40.0"; sha256="0dif4yvm9hfrnamjph5xa9cbf41f2v8lbgyr88f11alwwbf0dg69"; depends=[edgeR msmsEDA MSnbase qvalue]; }; + msqrob2 = derive2 { name="msqrob2"; version="1.10.0"; sha256="1g2a01cxjmfbjhx0rr2dq1wl8vq9llhpyq8qwn36jz6s0k32b2f5"; depends=[BiocParallel codetools limma lme4 MASS Matrix MultiAssayExperiment purrr QFeatures SummarizedExperiment]; }; + multiClust = derive2 { name="multiClust"; version="1.32.0"; sha256="0lmnmh365dzk50klcgi1fqkhk7myjcvmkc29vwzs56ljd2zlw0hm"; depends=[amap cluster ctc dendextend mclust survival]; }; + multiGSEA = derive2 { name="multiGSEA"; version="1.12.0"; sha256="0p9x69ybwss3bdsym78ajlkwx7vgj4nfvyig9drij524r90kfpd8"; depends=[AnnotationDbi dplyr fgsea graphite magrittr metaboliteIDmapping metap rappdirs rlang]; }; + multiHiCcompare = derive2 { name="multiHiCcompare"; version="1.20.0"; sha256="152h62f41r2lay2zpnllsfamy0m63w5bi5gnyy7q32rhmq9z2k3b"; depends=[aggregation BiocParallel data_table dplyr edgeR GenomeInfoDb GenomeInfoDbData GenomicRanges HiCcompare pbapply pheatmap qqman]; }; + multiMiR = derive2 { name="multiMiR"; version="1.24.0"; sha256="0mxih9nfjmgq3zd2c08ahwhnx3ahynj9phyrii6chllm3jcsfx15"; depends=[AnnotationDbi BiocGenerics dplyr purrr RCurl tibble XML]; }; + multiWGCNA = derive2 { name="multiWGCNA"; version="1.0.0"; sha256="1jp8amw31l45b2h9b138rmbzc43xx2swfs5pnlqladnnzwsbxvn3"; depends=[cowplot data_table dcanr dplyr flashClust ggalluvial ggplot2 ggrepel igraph patchwork readr reshape2 scales stringr SummarizedExperiment WGCNA]; }; + multicrispr = derive2 { name="multicrispr"; version="1.12.3"; sha256="13ahvfxp5jkjrhdp3bz480h2k3m055brni22dbl3144f9lnyrw5b"; depends=[assertive_base assertive_files assertive_numbers assertive_reflection assertive_sets BiocGenerics Biostrings BSgenome CRISPRseek data_table GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 karyoploteR magrittr plyranges Rbowtie reticulate rtracklayer stringi tidyr tidyselect]; }; + multiscan = derive2 { name="multiscan"; version="1.62.0"; sha256="09shs3hpa285v3hsbrncljxs02dm10qcbnnx9ss6b16gbs6d34wi"; depends=[Biobase]; }; + multtest = derive2 { name="multtest"; version="2.58.0"; sha256="0s8x2rg2xp6awg2cikybgxrxpi9f91jah7dskk5dnfkazd20di4j"; depends=[Biobase BiocGenerics MASS survival]; }; + mumosa = derive2 { name="mumosa"; version="1.10.0"; sha256="1mmhfy8lh1yd02vgw9bg32850sb5l875as8bv3xgq55c78ishlgv"; depends=[batchelor beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats igraph IRanges Matrix metapod S4Vectors ScaledMatrix scran scuttle SingleCellExperiment SummarizedExperiment uwot]; }; + muscat = derive2 { name="muscat"; version="1.16.0"; sha256="0vasr9rwnfjxbb3y2saq7gqzis5xyamgvns2rlywdxv1jm0nr8y3"; depends=[BiocParallel blme ComplexHeatmap data_table DESeq2 dplyr edgeR ggplot2 glmmTMB limma lme4 lmerTest Matrix matrixStats progress purrr S4Vectors scales scater sctransform scuttle SingleCellExperiment SummarizedExperiment variancePartition viridis]; }; + muscle = derive2 { name="muscle"; version="3.44.0"; sha256="0wmj0bjwr6lf7lp4bwnv94rwl2ibvdb50fwriiy742q1mm8b765x"; depends=[Biostrings]; }; + musicatk = derive2 { name="musicatk"; version="1.12.0"; sha256="0ql8lxc8148w8692w93v2c3x87zzy6m2v5df1krhsaswyl0anpkc"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 BSgenome_Mmusculus_UCSC_mm9 cluster ComplexHeatmap data_table decompTumor2Sig deconstructSigs dplyr factoextra GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggpubr ggrepel gridExtra gtools IRanges maftools magrittr MASS matrixTests MCMCprecision NMF philentropy plotly rlang S4Vectors shiny stringi stringr SummarizedExperiment tibble tidyr tidyverse topicmodels TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene uwot VariantAnnotation]; }; + mygene = derive2 { name="mygene"; version="1.38.0"; sha256="1a0jhcapr78yyx3z5dfsnz7bb9ahvnjq0qj9zzvdzyaxnzw0wvjm"; depends=[GenomicFeatures Hmisc httr jsonlite plyr S4Vectors sqldf]; }; + myvariant = derive2 { name="myvariant"; version="1.32.0"; sha256="0az7a7hg4xk0lrvnq3zk5zwyf8zdyby19xzwy73zzgqiaha0b245"; depends=[GenomeInfoDb Hmisc httr jsonlite magrittr plyr S4Vectors VariantAnnotation]; }; + mzID = derive2 { name="mzID"; version="1.40.0"; sha256="1rgkd9iv0lxj1zxh96sifwa312ivw5kl5jw82ma4fmapr4iqhzsh"; depends=[doParallel foreach iterators plyr ProtGenerics XML]; }; + mzR = derive2 { name="mzR"; version="2.36.0"; sha256="0z6ckp69syrdzhp6n4n399k2lar3w4n2d1ji2f90951c4ds6hkh8"; depends=[Biobase BiocGenerics ncdf4 ProtGenerics Rcpp Rhdf5lib]; }; + nanotatoR = derive2 { name="nanotatoR"; version="1.18.0"; sha256="1nnh4g4b7k6mp922pr52sxlrh6wvfyx7jhckmwrd12l1yjq010pb"; depends=[AnnotationDbi curl dplyr GenomicRanges hash httr knitr openxlsx org_Hs_eg_db rentrez rlang stringr testthat tidyverse VarfromPDB XML XML2R]; }; + ncGTW = derive2 { name="ncGTW"; version="1.16.0"; sha256="1dlfdzxkjy9yihd3acpr4ynj1s4387xihscx5qz0r463fcz6kr1y"; depends=[BiocParallel Rcpp xcms]; }; + ncRNAtools = derive2 { name="ncRNAtools"; version="1.12.0"; sha256="13skjmd3v0ysc4hj3lr3f3i07dy6gqswr44mh0289cs0x65s1xis"; depends=[GenomicRanges ggplot2 httr IRanges S4Vectors xml2]; }; + ncdfFlow = derive2 { name="ncdfFlow"; version="2.48.0"; sha256="0z9vgd8v69iq8gv23iiaxrk77j2aq8y2n5k8x9jmxphbm0cm19a0"; depends=[BH Biobase BiocGenerics cpp11 flowCore Rhdf5lib zlibbioc]; }; + ndexr = derive2 { name="ndexr"; version="1.24.0"; sha256="1sm7j8jqpmvdbrmxys17cg8nyisjy39vi1b16c4kdcvb97b4r2vj"; depends=[httr jsonlite plyr RCX tidyr]; }; + nearBynding = derive2 { name="nearBynding"; version="1.12.0"; sha256="114saana5jbb0bkpnaw0f52pnic5p7gsixcl34jqw5q4pdzwfz5z"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicRanges ggplot2 gplots magrittr matrixStats plyranges R_utils rlang Rsamtools rtracklayer S4Vectors transport TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + nempi = derive2 { name="nempi"; version="1.10.0"; sha256="0z12kw9iihmcgq5hy4vl914d39ghba3dmlk01rwyj5gnkac233yf"; depends=[e1071 epiNEM matrixStats mnem naturalsort nnet randomForest]; }; + netDx = derive2 { name="netDx"; version="1.14.0"; sha256="0plq4fz6fjgcri6swpfbffpcim52r5qws6g9fb36s4y8fvpjarpw"; depends=[bigmemory BiocFileCache combinat doParallel foreach GenomeInfoDb GenomicRanges ggplot2 glmnet httr igraph IRanges MultiAssayExperiment plotrix pracma rappdirs RColorBrewer reshape2 ROCR Rtsne S4Vectors]; }; + netOmics = derive2 { name="netOmics"; version="1.8.0"; sha256="03nyjvcr2hldsfifj0dix1bc79z05i9x2hgc5z2g9hd1jyijljyd"; depends=[AnnotationDbi dplyr ggplot2 GO_db gprofiler2 igraph magrittr minet purrr RandomWalkRestartMH tibble tidyr]; }; + netSmooth = derive2 { name="netSmooth"; version="1.22.0"; sha256="1wkjpxk9aw1w65kxf07rw1aj64bg9c75rx88vxxrniq89iwfynwl"; depends=[cluster clusterExperiment data_table DelayedArray entropy HDF5Array Matrix scater SingleCellExperiment SummarizedExperiment]; }; + netZooR = derive2 { name="netZooR"; version="1.6.0"; sha256="1fkq1vrdflli3vq3m4p375z3n7s4wd62ah94sp5j6szhnrz4fybh"; depends=[AnnotationDbi assertthat Biobase data_table doParallel dplyr foreach ggdendro ggplot2 GO_db GOstats gplots igraph MASS Matrix matrixcalc matrixStats nnet org_Hs_eg_db pandaR penalized RCy3 reshape reshape2 reticulate STRINGdb tidyr vegan viridisLite yarn]; }; + netboost = derive2 { name="netboost"; version="2.10.0"; sha256="1cmyh47d61saz2a47gp5a04kf5ajd2ghscm8lvrpichm1743hsm2"; depends=[BiocStyle colorspace dynamicTreeCut impute R_utils Rcpp RcppParallel WGCNA]; }; + nethet = derive2 { name="nethet"; version="1.34.0"; sha256="0js6vky7ilgz60kp62l3jh841lx4f1fdikklk0b3qa6fxvv6kshj"; depends=[CompQuadForm GeneNet ggm ggplot2 glasso glmnet GSA huge ICSNP limma mclust multtest mvtnorm network]; }; + netprioR = derive2 { name="netprioR"; version="1.28.0"; sha256="02hb9jxplby5yjghycfx9cd53b9kal5ma2hwllljfp0j7iv5cfwi"; depends=[doParallel dplyr foreach ggplot2 gridExtra Matrix pROC sparseMVN]; }; + netresponse = derive2 { name="netresponse"; version="1.62.0"; sha256="1sdmx9zah59p52sjay94zgpqbghsgx0gsgg25rdh5ayp3hy8n3z3"; depends=[BiocStyle ggplot2 graph igraph mclust minet plyr qvalue RColorBrewer reshape2 Rgraphviz rmarkdown]; }; + ngsReports = derive2 { name="ngsReports"; version="2.4.0"; sha256="0phlm6qsvd1kzk25678lr105srwvs3hvxksjg7jlq901vnl1bhdb"; depends=[BiocGenerics Biostrings checkmate dplyr DT forcats ggdendro ggplot2 jsonlite lifecycle lubridate pander patchwork plotly readr reshape2 rlang rmarkdown scales stringr tibble tidyr tidyselect zoo]; }; + nipalsMCIA = derive2 { name="nipalsMCIA"; version="1.0.0"; sha256="1jvbr9zxl1y0whdav26jx7fhlj4lp22pmjx8aa0id651nc76nsc3"; depends=[ComplexHeatmap dplyr fgsea ggplot2 MultiAssayExperiment pracma rlang RSpectra scales SummarizedExperiment]; }; + nnNorm = derive2 { name="nnNorm"; version="2.66.0"; sha256="0wf48cfmmp6dljsw1iw92avk1b76z0qv9wg8lr09xpcp61ahpjnn"; depends=[marray nnet]; }; + nnSVG = derive2 { name="nnSVG"; version="1.6.0"; sha256="014d6k0b3sc09zmvknj04n899sb4ld39ggz5y9hs18k4k6v8wxbb"; depends=[BiocParallel BRISC Matrix matrixStats SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; + nondetects = derive2 { name="nondetects"; version="2.32.0"; sha256="0302mg5pbvbzp9rhm6wg4lfa7c7lkndysx35x8b1zskc4b1v76cv"; depends=[arm Biobase HTqPCR limma mvtnorm]; }; + normalize450K = derive2 { name="normalize450K"; version="1.30.0"; sha256="027j1pm3l5aq5wzzqfw6rxzwiw6ir7haxwb8jc9d0h4hi7csngiw"; depends=[Biobase illuminaio quadprog]; }; + normr = derive2 { name="normr"; version="1.28.0"; sha256="05xlqg5d5m3kd6mc8lnq7kg90bwwk5vb3d6c99pqnwr98mw5sm8k"; depends=[bamsignals GenomeInfoDb GenomicRanges IRanges qvalue Rcpp rtracklayer]; }; + npGSEA = derive2 { name="npGSEA"; version="1.38.0"; sha256="0m53l08fz5fsip9hc65cgabwd1xrpdj8fmywklsip467k4fw7zdw"; depends=[Biobase BiocGenerics GSEABase]; }; + nuCpos = derive2 { name="nuCpos"; version="1.20.0"; sha256="1qnmmxlabah0w4dpin4s02jzcwxk86djgal7m4s4fymh9gc3yi5q"; depends=[]; }; + nucleR = derive2 { name="nucleR"; version="2.34.0"; sha256="12jy9s03saxcmvbh82ip8r803j3bz8kkzvgs45zl4mqjv1gsf07p"; depends=[Biobase BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr Rsamtools S4Vectors ShortRead]; }; + nucleoSim = derive2 { name="nucleoSim"; version="1.30.0"; sha256="1a0fnx97q6fgfsnplw016xk0hq5vrn9sbk11rbfbwk58kx6jzfgg"; depends=[IRanges S4Vectors]; }; + nullranges = derive2 { name="nullranges"; version="1.8.0"; sha256="13k2ij87fw902w0f0322wk3xnjcbsnbfimvanvxxlnv0yr9d9nva"; depends=[data_table GenomeInfoDb GenomicRanges ggplot2 ggridges InteractionSet IRanges plyranges progress rlang S4Vectors scales]; }; + occugene = derive2 { name="occugene"; version="1.62.0"; sha256="04aw765wkp8j9cgl317bxvybhqnl85zn1gjzlx8n043i8jp915pn"; depends=[]; }; + octad = derive2 { name="octad"; version="1.4.0"; sha256="01fm8zz50phrnj1x69992zynv82xhh2zn1m7d0zax13mscsdyfbp"; depends=[AnnotationHub Biobase data_table DESeq2 dplyr EDASeq edgeR ExperimentHub foreach ggplot2 GSVA htmlwidgets httr limma magrittr octad_db plotly reshape2 Rfast rhdf5 RUVSeq S4Vectors]; }; + odseq = derive2 { name="odseq"; version="1.30.0"; sha256="07k7029s53wi02my3c492ihc0k8wrd6ninj97mkgbq7m20si3bid"; depends=[kebabs mclust msa]; }; + oligo = derive2 { name="oligo"; version="1.66.0"; sha256="0pqn5qslynylx235wknwj71a6j7xf5i6pb7wjm00jwrdbqwvdlp6"; depends=[affxparser affyio Biobase BiocGenerics Biostrings DBI ff oligoClasses preprocessCore RSQLite zlibbioc]; }; + oligoClasses = derive2 { name="oligoClasses"; version="1.64.0"; sha256="1gdvjvyjfpvvrqyj9rq1l4dnq00hr8vr8knnlb9gnjk21sbcf1d7"; depends=[affyio Biobase BiocGenerics BiocManager Biostrings DBI ff foreach GenomicRanges IRanges RSQLite S4Vectors SummarizedExperiment]; }; + omada = derive2 { name="omada"; version="1.4.0"; sha256="0nk6rsk8m4w32447adwz87vq5gnh8ymgzdqn4621hkwr123q85fx"; depends=[clValid diceR dplyr fpc genieclust ggplot2 glmnet kernlab pdfCluster Rcpp reshape]; }; + omicRexposome = derive2 { name="omicRexposome"; version="1.24.2"; sha256="06hmpnh5xbw3d3i92spz8312vg4m0lay0pkayhkd2yd8bvdhddnx"; depends=[Biobase ggplot2 ggrepel gridExtra isva limma MultiDataSet omicade4 PMA rexposome SmartSVA stringr SummarizedExperiment sva]; }; + omicade4 = derive2 { name="omicade4"; version="1.42.0"; sha256="0i4ln95ayl1irr8sr3639x35ilysdi663kksw7g93q1ry91yav8r"; depends=[ade4 Biobase made4]; }; + omicplotR = derive2 { name="omicplotR"; version="1.22.0"; sha256="0zqzzb463656dn9lhnmbfzxyl4qj5hqcnyd5jrxrk88v5lyy0hb1"; depends=[ALDEx2 compositions DT jsonlite knitr matrixStats rmarkdown shiny vegan zCompositions]; }; + omicsPrint = derive2 { name="omicsPrint"; version="1.22.0"; sha256="0vax74j75id747ia0fy5zqvb0zb7bm8fmk3cysxlqlhzq8pbswhn"; depends=[MASS matrixStats MultiAssayExperiment RaggedExperiment SummarizedExperiment]; }; + omicsViewer = derive2 { name="omicsViewer"; version="1.6.0"; sha256="1madi9s3g6sfcd141rn7v7phm4bppbhalhdkp1gcdjmm18xgg8z5"; depends=[beeswarm Biobase curl DT fastmatch fgsea flatxml ggplot2 htmlwidgets httr Matrix matrixStats networkD3 openxlsx plotly psych RColorBrewer reshape2 ROCR RSQLite S4Vectors shiny shinybusy shinycssloaders shinyjs shinythemes shinyWidgets stringr SummarizedExperiment survival survminer]; }; + ompBAM = derive2 { name="ompBAM"; version="1.6.0"; sha256="1z5vw3pwdjszcgm33hsnyl8ffjcpq5ld3y8c0kzp9j33b8jm76lr"; depends=[Rcpp zlibbioc]; }; + oncomix = derive2 { name="oncomix"; version="1.24.0"; sha256="0a1i3bhzjbq22cg9c9dqx722hlsf4ivli3wz2wnyrigj76jmmfq2"; depends=[ggplot2 ggrepel mclust RColorBrewer SummarizedExperiment]; }; + oncoscanR = derive2 { name="oncoscanR"; version="1.4.0"; sha256="19wzm5rlddwcmldrnhl0q5ddiybgk9nv9fvbmrvas0bzk1n6han8"; depends=[GenomicRanges IRanges magrittr readr S4Vectors]; }; + onlineFDR = derive2 { name="onlineFDR"; version="2.10.0"; sha256="03dq7pwhamhwzlx8rzyrhsvy12r405dm1zfviivkdff8gqxlzwgm"; depends=[progress Rcpp RcppProgress]; }; + ontoProc = derive2 { name="ontoProc"; version="1.24.0"; sha256="15dzpjj2fvj6k2pzv6sw02a5py547wa4f9arj4rqrjrsvwwm1l9q"; depends=[AnnotationHub Biobase BiocFileCache dplyr DT graph igraph magrittr ontologyIndex ontologyPlot Rgraphviz S4Vectors shiny SummarizedExperiment]; }; + openCyto = derive2 { name="openCyto"; version="2.14.0"; sha256="12b4a65zgswzddkfdyl4j06qp7w9lkxv4h05m4z8hfff8c9x5bls"; depends=[BH Biobase BiocGenerics cpp11 data_table flowClust flowCore flowViz flowWorkspace graph ncdfFlow RBGL RColorBrewer]; }; + openPrimeR = derive2 { name="openPrimeR"; version="1.24.0"; sha256="0jpq68pr7ky7ak4jj8hz25n8kq75jwdg0jz5sy9j4kx9gs0njl4d"; depends=[ape BiocGenerics Biostrings DECIPHER digest distr distrEx dplyr fitdistrplus foreach GenomicRanges ggplot2 Hmisc IRanges lpSolveAPI magrittr openxlsx plyr RColorBrewer reshape2 S4Vectors scales seqinr stringdist stringr uniqtag XML]; }; + openPrimeRui = derive2 { name="openPrimeRui"; version="1.24.0"; sha256="1vymiz4zxh2d6paff29fm04h73wj1wdbrjl417lmxxn6pnffmdil"; depends=[DT openPrimeR rmarkdown shiny shinyBS shinyjs]; }; + oposSOM = derive2 { name="oposSOM"; version="2.20.0"; sha256="0h8c1a0v4izqlkg0jkzzxn885h5whr3i9pna6vbpf0rlrp2lkfxj"; depends=[ape Biobase biomaRt fastICA fdrtool graph igraph pixmap png Rcpp RcppParallel RCurl scatterplot3d tsne XML]; }; + oppar = derive2 { name="oppar"; version="1.30.0"; sha256="0a6hhgcklwjvi7i3p9i6c9dfrxam5vxjj9fws3vnig8353zc35p2"; depends=[Biobase GSEABase GSVA]; }; + oppti = derive2 { name="oppti"; version="1.16.0"; sha256="0cn7pv1pjajh7kylfi4v8xx53bwcp34325hfg5aq5bz5ncsfwxlk"; depends=[devtools ggplot2 knitr limma parallelDist pheatmap RColorBrewer reshape]; }; + optimalFlow = derive2 { name="optimalFlow"; version="1.14.0"; sha256="0ghwdj48xqgnzmg1hcl0xplsmwbc1blnd8l3kkyf8058m0m0lymr"; depends=[dbscan doParallel dplyr ellipse flowMeans foreach optimalFlowData randomForest Rfast rgl rlang robustbase transport]; }; + orthogene = derive2 { name="orthogene"; version="1.8.0"; sha256="0kw2bd0196g15ghf5fnl79gvs9py221zalv2jz52vc3k871b0wi8"; depends=[babelgene data_table DelayedArray dplyr ggplot2 ggpubr ggtree gprofiler2 grr homologene jsonlite Matrix patchwork repmis]; }; + orthos = derive2 { name="orthos"; version="1.0.1"; sha256="0siblsmbswcbbzgd03hh50bcq0qhn2a7ia2mbkaps3z7dx4k0ywb"; depends=[AnnotationHub basilisk BiocParallel colorspace cowplot DelayedArray dplyr ExperimentHub ggplot2 ggpubr ggrepel ggsci HDF5Array keras orthosData plyr reticulate rlang S4Vectors SummarizedExperiment tensorflow tidyr]; }; + pRoloc = derive2 { name="pRoloc"; version="1.42.0"; sha256="14xdkcg92k0cn62vgaadmmfa1qz2r67xnn3lsrgps960gi66w2ps"; depends=[Biobase BiocGenerics BiocParallel biomaRt caret class coda dendextend e1071 FNN ggplot2 gtools hexbin kernlab knitr LaplacesDemon lattice MASS mclust mixtools MLInterfaces MSnbase mvtnorm nnet plyr proxy randomForest RColorBrewer Rcpp RcppArmadillo sampling scales]; }; + pRolocGUI = derive2 { name="pRolocGUI"; version="2.12.0"; sha256="0m493r27n4aq7ig95gnn0di09qmcvmnzrdbks0lr2zd4p032l5gx"; depends=[Biobase BiocGenerics colorspace colourpicker dplyr DT ggplot2 MSnbase pRoloc scales shiny shinydashboard shinydashboardPlus shinyhelper shinyjs shinyWidgets]; }; + packFinder = derive2 { name="packFinder"; version="1.14.0"; sha256="1s3sqwhzf7ll8kp5wg2riv3yxwbrssh9qpyjis83n3a19qi64jz6"; depends=[ape Biostrings GenomicRanges IRanges kmer S4Vectors]; }; + padma = derive2 { name="padma"; version="1.12.0"; sha256="03b6zaas11i9aywlrpdhv6sv0cv6347yrw24hfpj8fym14sj67xd"; depends=[FactoMineR MultiAssayExperiment S4Vectors SummarizedExperiment]; }; + pageRank = derive2 { name="pageRank"; version="1.12.0"; sha256="0qvcbcil6kvfvk460lzpj43h0vw2mqc967c3kfnycylwxdcgkqd1"; depends=[GenomicRanges igraph motifmatchr]; }; + paircompviz = derive2 { name="paircompviz"; version="1.40.0"; sha256="1wi93vii4k84fp5ygvmakdw9jhl4qbnwjhfnxi0p7mv4sxxivxb4"; depends=[Rgraphviz]; }; + pairedGSEA = derive2 { name="pairedGSEA"; version="1.2.0"; sha256="1lcp5ghbf6vabiy9661qrqn5nfl71ay64q7cf3iz9hhwip61xbdy"; depends=[aggregation BiocParallel DESeq2 DEXSeq fgsea ggplot2 limma S4Vectors SummarizedExperiment sva]; }; + pairkat = derive2 { name="pairkat"; version="1.8.0"; sha256="14vad3fd9588yqh1cc52p43kpp5avnw10zdff4gzwgpx9yars7xs"; depends=[CompQuadForm data_table igraph KEGGREST magrittr SummarizedExperiment tibble]; }; + pandaR = derive2 { name="pandaR"; version="1.34.0"; sha256="1562dv98hrh61n8p48779cr1824qy2jjnqgv4pmpxbnihmk3mrnw"; depends=[Biobase BiocGenerics ggplot2 hexbin igraph matrixStats plyr reshape RUnit]; }; + panelcn_mops = derive2 { name="panelcn.mops"; version="1.24.0"; sha256="1b86bgnb0cr20ymp3zx75c178p7bjvfid6k43ip3cm7vzx86f1cv"; depends=[cn_mops GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; + panp = derive2 { name="panp"; version="1.72.0"; sha256="1s069hlvbxgi37bx3h7bj8k5a94b0ndkvzjp2j5fji8y72f0sfzj"; depends=[affy Biobase]; }; + pareg = derive2 { name="pareg"; version="1.6.0"; sha256="0cvj8jx80q3d21icy9k88kc6xcb44fxmpq4sqdijglrjl7l1l2pn"; depends=[basilisk devtools doFuture doRNG DOSE dplyr foreach future ggplot2 ggraph ggrepel glue hms igraph keras logger magrittr Matrix nloptr progress proxy purrr reticulate rlang stringr tensorflow tfprobability tibble tidygraph tidyr]; }; + parglms = derive2 { name="parglms"; version="1.34.0"; sha256="05mrnddprcwl0m701fn2h1higy47yi2fmwwzd3zq1nr2qsacnpn1"; depends=[BatchJobs BiocGenerics doParallel foreach]; }; + parody = derive2 { name="parody"; version="1.60.0"; sha256="05mhbkhyh92bwmx37fpviprr9i4z0i6g24l71zk17gq0f8hwb4jj"; depends=[]; }; + partCNV = derive2 { name="partCNV"; version="1.0.0"; sha256="15caglc8xs4441va2p8bd2pbz4jvlczy4hjnky7i280zzrjqx52a"; depends=[AnnotationHub data_table depmixS4 GenomicRanges magrittr Seurat SingleCellExperiment]; }; + pathRender = derive2 { name="pathRender"; version="1.70.0"; sha256="04ij9f9vnzj4qzk8cgvrkd0jhjx4qh5g3cv25drd230v5x492lhz"; depends=[AnnotationDbi cMAP graph RColorBrewer Rgraphviz]; }; + pathifier = derive2 { name="pathifier"; version="1.40.0"; sha256="0y5hc1d5026kh3i05qpsjigfzhlp4h2f87ny08qbf3k9x7lndpbn"; depends=[princurve R_oo]; }; + pathview = derive2 { name="pathview"; version="1.42.0"; sha256="17kl7yvpjhsb52kz1pw3jnk6s480lnpvvh9rragndixsl8bkmqmc"; depends=[AnnotationDbi graph KEGGgraph KEGGREST org_Hs_eg_db png Rgraphviz XML]; }; + pathwayPCA = derive2 { name="pathwayPCA"; version="1.18.0"; sha256="14d0anbfwxd666gyhgnqjayr1ivhayq2a8cpgi0w1ycpsbylylp4"; depends=[lars survival]; }; + paxtoolsr = derive2 { name="paxtoolsr"; version="1.36.0"; sha256="07rkyn3i6v98lkjz13la0x1g81zhnyyr44jdid5c2dydlfpchl7h"; depends=[httr igraph jsonlite plyr R_utils rappdirs readr rJava rjson XML]; }; + pcaExplorer = derive2 { name="pcaExplorer"; version="2.28.0"; sha256="0ihc9jqjy0nl4pfgcxczfdf973nb99325agk73y0222ad1mpkc07"; depends=[AnnotationDbi base64enc biomaRt DESeq2 DT genefilter GenomicRanges ggplot2 ggrepel GO_db GOstats heatmaply IRanges knitr limma NMF pheatmap plotly plyr rmarkdown S4Vectors scales shiny shinyAce shinyBS shinydashboard SummarizedExperiment threejs tidyr topGO]; }; + pcaMethods = derive2 { name="pcaMethods"; version="1.94.0"; sha256="1asm4iafdzm98iv2j9sxvn5y9ss2p679cx7gwjipq8mf1d7bzfp0"; depends=[Biobase BiocGenerics MASS Rcpp]; }; + pcxn = derive2 { name="pcxn"; version="2.24.0"; sha256="1m8vs3bk7grc1mj4rh6vr50al0m1a79f6icbycfqfi1cqgz9pmi7"; depends=[pcxnData pheatmap]; }; + pdInfoBuilder = derive2 { name="pdInfoBuilder"; version="1.66.0"; sha256="1bcmd6g6qmddcxyafqmrk4zv8n14mjkim87ks8ha3rjyg5cpc9cs"; depends=[affxparser Biobase BiocGenerics Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + peakPantheR = derive2 { name="peakPantheR"; version="1.16.0"; sha256="01x6701ji451yj52yiqx8fpz23zd96ci8p07j2kdi4nz6cl7k2d3"; depends=[bslib doParallel DT foreach ggplot2 gridExtra lubridate minpack_lm MSnbase mzR pracma scales shiny shinycssloaders stringr XML]; }; + peco = derive2 { name="peco"; version="1.14.0"; sha256="0jhz9y6d9sfc6azw74rx5lcf421a3i9pb936rghlym8n24b72jvl"; depends=[assertthat circular conicfit doParallel foreach genlasso scater SingleCellExperiment SummarizedExperiment]; }; + pengls = derive2 { name="pengls"; version="1.8.0"; sha256="1b5xibq5z4lq6qr4s37r9w5ax2vci89a1hfi66l4xvbpm76zlckh"; depends=[BiocParallel glmnet nlme]; }; + pepStat = derive2 { name="pepStat"; version="1.36.0"; sha256="0rd1zwjnp0zmigscx38xzys29jqpkkg9fp24asvqikm1v3gpli3l"; depends=[Biobase data_table fields GenomicRanges ggplot2 IRanges limma plyr]; }; + pepXMLTab = derive2 { name="pepXMLTab"; version="1.36.0"; sha256="1d0n27xfyqdxayc9s1w5j2pj7x82kwh80kszr46f30yhfd61l6j4"; depends=[XML]; }; + periodicDNA = derive2 { name="periodicDNA"; version="1.12.0"; sha256="08qf0sqy71cr2y9xj596igm4j7zym9ny5q6xd67jrp5iqwysyfzq"; depends=[BiocParallel Biostrings BSgenome cowplot GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr rtracklayer S4Vectors zoo]; }; + pfamAnalyzeR = derive2 { name="pfamAnalyzeR"; version="1.2.0"; sha256="0qxxp7kfwbb9q471mgwc4bd8dmyid56ddyzw2jlg4gb1wcq9py67"; depends=[dplyr magrittr readr stringr tibble]; }; + pgca = derive2 { name="pgca"; version="1.26.0"; sha256="0sp0rhrs36hhyydswi00321cw13m4hcyf6a430wc4xsmia29463s"; depends=[]; }; + phantasus = derive2 { name="phantasus"; version="1.22.2"; sha256="1ynwx1bbzj1xm6hci4kxqgmzargarg85saqz1219axj1gsyhljfn"; depends=[AnnotationDbi assertthat Biobase ccaPP curl data_table DESeq2 edgeR fgsea GEOquery ggplot2 gtable htmltools httpuv httr jsonlite limma Matrix opencpu pheatmap protolite rhdf5 Rook scales stringr svglite]; }; + phantasusLite = derive2 { name="phantasusLite"; version="1.0.0"; sha256="0pq50l0lnx3b8v95k37cj7dcm60ggar0zs6j4qv3qpjd37aqqbwa"; depends=[Biobase data_table httr rhdf5client stringr]; }; + phemd = derive2 { name="phemd"; version="1.18.0"; sha256="174jp26insq2mwf9yw9bls4i9b2a8vccfkrg2h1dzvyyk513bi83"; depends=[Biobase BiocGenerics cluster cowplot destiny ggplot2 igraph maptree monocle phateR pheatmap pracma RANN RColorBrewer reticulate Rtsne S4Vectors scatterplot3d Seurat SingleCellExperiment SummarizedExperiment transport VGAM]; }; + phenoTest = derive2 { name="phenoTest"; version="1.50.0"; sha256="0hrmbjanc5sscwc6948w5np4phz4ax8qldasi4cg5n0x18hqr3h5"; depends=[annotate AnnotationDbi Biobase biomaRt BMA Category ellipse genefilter ggplot2 gplots GSEABase Heatplus hgu133a_db Hmisc hopach limma mgcv survival xtable]; }; + phenomis = derive2 { name="phenomis"; version="1.4.0"; sha256="1zfrw4s01l030i4kpn07kw4gg9324s8aikkvv0pqm1jlv1ajj01g"; depends=[Biobase biodb biodbChebi data_table futile_logger ggplot2 ggrepel htmlwidgets igraph limma MultiAssayExperiment MultiDataSet plotly PMCMRplus ranger RColorBrewer ropls SummarizedExperiment tibble tidyr VennDiagram]; }; + phenopath = derive2 { name="phenopath"; version="1.26.0"; sha256="114wpnsszivxjp5q0xr7vz4g249dhxzx9aqvcx3bky5s7vqf9q94"; depends=[dplyr ggplot2 Rcpp SummarizedExperiment tibble tidyr]; }; + philr = derive2 { name="philr"; version="1.28.0"; sha256="1kd7j8ah7v15xdkks4bjww72pbb45b2nvjygk65wnjc8qs53zngw"; depends=[ape ggplot2 ggtree phangorn tidyr]; }; + phosphonormalizer = derive2 { name="phosphonormalizer"; version="1.26.0"; sha256="1xs9vdf0kh2dpnbn1cdfw64gq4nzawm53vrlq83qhccfgfxvvx9i"; depends=[matrixStats plyr]; }; + phyloseq = derive2 { name="phyloseq"; version="1.46.0"; sha256="06gnpjcniqm8i52xh9xl3nn0wm9nn9rkqd3w3fjv7ii142xypjln"; depends=[ade4 ape Biobase BiocGenerics biomformat Biostrings cluster data_table foreach ggplot2 igraph multtest plyr reshape2 scales vegan]; }; + piano = derive2 { name="piano"; version="2.18.0"; sha256="0rw55ig3pbvi2kyg10rx60ldcncsd4gki2h1zpr1nhmqg3fv0l5y"; depends=[Biobase BiocGenerics DT fgsea gplots htmlwidgets igraph marray relations scales shiny shinydashboard shinyjs visNetwork]; }; + pickgene = derive2 { name="pickgene"; version="1.74.0"; sha256="0dp862069sxyaxmniszn9hggpjqch3dg9s3q5f7iqdb9gijvz8jx"; depends=[MASS]; }; + pipeComp = derive2 { name="pipeComp"; version="1.12.0"; sha256="0wf2vw4r83l6jwdp9i57g7rv69j9wg6rzcamsvb3ksxfj0yjsf6r"; depends=[aricode BiocParallel circlize clue cluster ComplexHeatmap cowplot dplyr ggplot2 intrinsicDimension knitr Matrix matrixStats randomcoloR RColorBrewer reshape2 Rtsne S4Vectors scales scater scran Seurat SingleCellExperiment SummarizedExperiment uwot viridisLite]; }; + pipeFrame = derive2 { name="pipeFrame"; version="1.18.0"; sha256="1vvxjb0hzr1y09yl39lsayvpy15mc3199s6khgh3v8416mhxhwn9"; depends=[Biostrings BSgenome digest GenomeInfoDb magrittr rmarkdown visNetwork]; }; + planet = derive2 { name="planet"; version="1.10.0"; sha256="10imcjax2ymqwkrx1li5dmi0yy42nn4gl029czgrsnk8fcfkijmj"; depends=[dplyr magrittr tibble]; }; + planttfhunter = derive2 { name="planttfhunter"; version="1.2.0"; sha256="18p9ms5vz8bis6v07dh9zn3qm0bck71p1rflzslcqgnx2y8icnc7"; depends=[Biostrings SummarizedExperiment]; }; + plasmut = derive2 { name="plasmut"; version="1.0.0"; sha256="1b27ykiraprda3a1sg008wrkkm5vmbhb5mf3sxgg0b136ldfqv1h"; depends=[dplyr tibble]; }; + plgem = derive2 { name="plgem"; version="1.74.0"; sha256="0s5hia3xvddi0gaawcr5zsh34v6sh2zdi5gsjis8ar2g2p7agqgg"; depends=[Biobase MASS]; }; + plier = derive2 { name="plier"; version="1.72.0"; sha256="1a4sb7ni6byzdhh5wkfg7z47za8cr6q85b7349wz02c87axjhn31"; depends=[affy Biobase]; }; + plotGrouper = derive2 { name="plotGrouper"; version="1.20.0"; sha256="0f3vnv6kmx62rfxdqfyn1j8npda18ry39y1cxxdghpxbnvl9678d"; depends=[colourpicker dplyr egg ggplot2 ggpubr gridExtra gtable Hmisc magrittr readr readxl rlang scales shiny shinythemes stringr tibble tidyr]; }; + plotgardener = derive2 { name="plotgardener"; version="1.8.2"; sha256="0mh025ki2i35pm5a51sy5nak1h2ygzakphjj74n0d0732a00xykj"; depends=[curl data_table dplyr GenomeInfoDb GenomicRanges ggplotify IRanges plyranges purrr RColorBrewer Rcpp rlang strawr withr]; }; + plyinteractions = derive2 { name="plyinteractions"; version="1.0.0"; sha256="1f11mnaykvr1knzymr73ivrfwnsbnr8gdb4wl3hr5g0p2mhl3ir6"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicRanges InteractionSet IRanges plyranges rlang S4Vectors tibble tidyselect]; }; + plyranges = derive2 { name="plyranges"; version="1.22.0"; sha256="1z4pc9slbd6ji3c6g9flxhvvf0anjmywrlnjblv1mpgsh88avp7w"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges IRanges magrittr rlang Rsamtools rtracklayer S4Vectors tidyselect]; }; + pmm = derive2 { name="pmm"; version="1.34.0"; sha256="0hcm03z7z4fsxlr0g1jwpqmwmq17pzagwkfds70p0ldixrs5zfrw"; depends=[lme4]; }; + pmp = derive2 { name="pmp"; version="1.14.0"; sha256="0771h3g4b7k37l8azcc35g4hk06f3wi6ff9s6z5myn4igfc4nmhn"; depends=[ggplot2 impute matrixStats missForest pcaMethods reshape2 S4Vectors SummarizedExperiment]; }; + podkat = derive2 { name="podkat"; version="1.34.0"; sha256="0003237bhwyrvlfsb5vncbq76l74i9y0cvh0zmbfpbqz8d72nf98"; depends=[Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp Rhtslib Rsamtools]; }; + pogos = derive2 { name="pogos"; version="1.22.0"; sha256="0rx60m4jmw8a7ha6nkszachk4dl0bjv0n4mvgvi2kiy7a3s3p6zp"; depends=[ggplot2 httr ontoProc rjson S4Vectors shiny]; }; + polyester = derive2 { name="polyester"; version="1.38.0"; sha256="1iycdxj0jhh2faclfzflp2cjc2zmxmhy03avv75h0qg3j5kf35l4"; depends=[Biostrings IRanges limma logspline S4Vectors zlibbioc]; }; + powerTCR = derive2 { name="powerTCR"; version="1.22.0"; sha256="06fmphdq95pjbbvm8m8h1wajbp3vhl0zj7ddbzks9fy7ankp1n3i"; depends=[cubature doParallel evmix foreach magrittr purrr truncdist vegan VGAM]; }; + ppcseq = derive2 { name="ppcseq"; version="1.10.0"; sha256="01g67bskk71imkb04ln3cngbdf23lvaaldsvbrrk6sym51l3c3mn"; depends=[benchmarkme BH dplyr edgeR foreach ggplot2 lifecycle magrittr purrr Rcpp RcppEigen RcppParallel rlang rstan rstantools StanHeaders tibble tidybayes tidyr]; }; + pqsfinder = derive2 { name="pqsfinder"; version="2.18.0"; sha256="0bm4rp6dvk9y8i3mj762rjjna9w75j6ggkkd60aqddidx4dicc6b"; depends=[BH Biostrings GenomicRanges IRanges Rcpp S4Vectors]; }; + pram = derive2 { name="pram"; version="1.18.0"; sha256="1zid1ra1b6qa6c8xw5z9jclkkjv5r61rzhw0xikm5mamg4mhvv4x"; depends=[BiocGenerics BiocParallel data_table GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; + prebs = derive2 { name="prebs"; version="1.42.0"; sha256="1zg73x9ygllxrjhswvz9bv5lacnfxlaq56y34j6zkvj3zmcpqx4g"; depends=[affy Biobase GenomeInfoDb GenomicAlignments GenomicRanges IRanges RPA S4Vectors]; }; + preciseTAD = derive2 { name="preciseTAD"; version="1.12.0"; sha256="1vf71x59wghiq78ns0xfr587rarzpcnzkik78xghnpkidk16183s"; depends=[caret cluster dbscan doSNOW e1071 foreach GenomicRanges gtools IRanges ModelMetrics pbapply pROC PRROC randomForest rCGH S4Vectors]; }; + preprocessCore = derive2 { name="preprocessCore"; version="1.64.0"; sha256="15fy3vwnjx6rwrkhbwxyvdykkfdis8c0m18x6y7irvyij9lm6x1y"; depends=[]; }; + primirTSS = derive2 { name="primirTSS"; version="1.20.0"; sha256="1gzswcihphq6vc9n0cshsf8nznysa1f738cv6l9mjkzshj2f3bxq"; depends=[BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg38 dplyr GenomicRanges GenomicScores Gviz IRanges JASPAR2018 phastCons100way_UCSC_hg38 purrr R_utils rtracklayer S4Vectors shiny stringr TFBSTools tibble tidyr]; }; + proActiv = derive2 { name="proActiv"; version="1.12.0"; sha256="00cm99hgcrirdj1xrkg06q2r7idy0fajw8k33934m2622si7lwhj"; depends=[AnnotationDbi BiocParallel data_table DESeq2 dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges rlang S4Vectors scales SummarizedExperiment tibble]; }; + proBAMr = derive2 { name="proBAMr"; version="1.36.0"; sha256="0jn0cv48nfykyilmbbpdapxwfslrdby2j83s7f2mm3hbrikvk11r"; depends=[AnnotationDbi Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer]; }; + proDA = derive2 { name="proDA"; version="1.16.0"; sha256="08zs0lapq9qynivrainh29l0flz0g6w68xzdf13hr9y1lizs11vp"; depends=[BiocGenerics extraDistr S4Vectors SummarizedExperiment]; }; + procoil = derive2 { name="procoil"; version="2.30.0"; sha256="020sj33sj333cb5bvvld7rsxc8kwzkl996y11f6n8h5zs3flqbn1"; depends=[Biostrings kebabs S4Vectors]; }; + profileScoreDist = derive2 { name="profileScoreDist"; version="1.30.0"; sha256="1x34mqb7d5zb1nqp6zh2s3bx95qxaizyn6bi11vs84qvp4myqmws"; depends=[BiocGenerics Rcpp]; }; + profileplyr = derive2 { name="profileplyr"; version="1.18.0"; sha256="1cng4l5b1mfx3iqx7gis3p9s0iyhrjm554gcdhg15hpydapgx7nv"; depends=[BiocGenerics BiocParallel ChIPseeker circlize ComplexHeatmap dplyr EnrichedHeatmap GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges magrittr org_Hs_eg_db org_Mm_eg_db pheatmap R_utils rGREAT rjson rlang Rsamtools rtracklayer S4Vectors soGGi SummarizedExperiment tidyr tiff TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene]; }; + progeny = derive2 { name="progeny"; version="1.24.0"; sha256="1plgwi2fmx7bh648fqpzzfqnh84fsgnn5jfcbdf9yia6zzigicql"; depends=[Biobase decoupleR dplyr ggplot2 ggrepel gridExtra reshape2 tidyr]; }; + projectR = derive2 { name="projectR"; version="1.18.0"; sha256="1jg8nkkh8xc2fiw94h69saira55gm9qjjiv206cac9hi49fjw1k8"; depends=[cluster cowplot dplyr ggalluvial ggplot2 ggrepel limma Matrix MatrixModels NMF RColorBrewer reshape2 ROCR scales tsne umap viridis]; }; + protGear = derive2 { name="protGear"; version="1.6.0"; sha256="0r8md32vxjzarjldr9vsh3k0ms4zgqm9c7pp2flanbyinnqlfnxv"; depends=[Biobase data_table dplyr factoextra FactoMineR flexdashboard genefilter GGally ggplot2 ggpubr gtools htmltools Kendall knitr limma magrittr MASS pheatmap plotly plyr purrr readr remotes rlang rmarkdown shiny shinydashboard styler tibble tidyr vsn]; }; + proteinProfiles = derive2 { name="proteinProfiles"; version="1.42.0"; sha256="152nv9m4pzq7jh37xl4shv5g71w490cxqcah2lqprpgd6mwc5ac1"; depends=[]; }; + psichomics = derive2 { name="psichomics"; version="1.28.0"; sha256="0g70wn1r0lpn3xm9b8f2797aww4ch533n12wm3q076i4357da06j"; depends=[AnnotationDbi AnnotationHub BiocFileCache cluster colourpicker data_table digest dplyr DT edgeR fastICA fastmatch ggplot2 ggrepel highcharter htmltools httr jsonlite limma pairsD3 plyr purrr R_utils Rcpp recount reshape2 Rfast shiny shinyBS shinyjs stringr SummarizedExperiment survival XML xtable]; }; + psygenet2r = derive2 { name="psygenet2r"; version="1.34.0"; sha256="0amjlgnaqlbc72n6sfk85bqim3cifpw01xl99zcg9fnqxk50h9ff"; depends=[BgeeDB Biobase biomaRt ggplot2 GO_db igraph labeling RCurl reshape2 stringr topGO]; }; + ptairMS = derive2 { name="ptairMS"; version="1.10.0"; sha256="0qjnbx91vdj6hbiri7nh3q53p8hi0vnjxq8hcwrsqa5ar70k38hz"; depends=[Biobase bit64 chron data_table doParallel DT enviPat foreach ggplot2 ggpubr gridExtra Hmisc minpack_lm MSnbase plotly Rcpp rhdf5 rlang scales shiny shinyscreenshot signal]; }; + puma = derive2 { name="puma"; version="3.44.0"; sha256="1s50gf44psg01p8c84rp89hkic7bcxyk9wyzq8b7xphvilgy4gdk"; depends=[affy affyio Biobase mclust oligo oligoClasses]; }; + pvac = derive2 { name="pvac"; version="1.50.0"; sha256="073ah4d92kqgaxcbyvn7v17bfj0303g5zmdwpmm73rgxl9zj2idd"; depends=[affy Biobase]; }; + pvca = derive2 { name="pvca"; version="1.42.0"; sha256="0l2d8yqbqb9ra04adzlldjkcnpmd01ziia40k4p5z265f0apxwvc"; depends=[Biobase lme4 Matrix vsn]; }; + pwOmics = derive2 { name="pwOmics"; version="1.34.0"; sha256="0sq98v0ln6y0mnl5xhk90j66zzvxwgbzr15xcbyn1f51a9jil21l"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics biomaRt data_table GenomicRanges gplots graph igraph rBiopaxParser STRINGdb]; }; + qPLEXanalyzer = derive2 { name="qPLEXanalyzer"; version="1.20.0"; sha256="1iy4d6nlbvinqqjynlixv2j3fy2vnyrjgs39kn5grj1sivbykr46"; depends=[assertthat Biobase BiocGenerics Biostrings dplyr ggdendro ggplot2 IRanges limma magrittr MSnbase preprocessCore purrr RColorBrewer readr rlang scales stringr tibble tidyr tidyselect]; }; + qckitfastq = derive2 { name="qckitfastq"; version="1.18.0"; sha256="0fa9cg8nmsch13snk5n81zvm7f2d1ddhlbfxx9dl8g7kam2lc6i1"; depends=[data_table dplyr ggplot2 magrittr Rcpp reshape2 rlang RSeqAn seqTools zlibbioc]; }; + qcmetrics = derive2 { name="qcmetrics"; version="1.40.0"; sha256="03s0jx6mmmv1634awfw6gvllzp36fx8xmqf6k39j2fnc93nd6bag"; depends=[Biobase knitr pander S4Vectors xtable]; }; + qmtools = derive2 { name="qmtools"; version="1.6.0"; sha256="0p1455wsl8ca2rjzvzv2ifwlfa3jy4pp2nqxd3kd6w9wyp839q05"; depends=[ggplot2 heatmaply igraph limma MsCoreUtils patchwork rlang scales SummarizedExperiment VIM]; }; + qpcrNorm = derive2 { name="qpcrNorm"; version="1.60.0"; sha256="0isjj3r89r49jrb0nh8im4kj22hjyic27j9s14n5z7rhkmsn3yac"; depends=[affy Biobase limma]; }; + qpgraph = derive2 { name="qpgraph"; version="2.36.0"; sha256="03vk1msbgph6ig3hz34p1lb0rv7y1x8ylmm80d1n3yhmk61q1jd4"; depends=[annotate AnnotationDbi Biobase BiocParallel GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges Matrix mvtnorm qtl Rgraphviz S4Vectors]; }; + qsea = derive2 { name="qsea"; version="1.28.0"; sha256="0iz12lasqnqc05bwyf6m8816ra9krvz3c12bx7d7gn3p6v3xl6r7"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges gtools HMMcopy IRanges limma Rsamtools rtracklayer S4Vectors zoo]; }; + qsmooth = derive2 { name="qsmooth"; version="1.18.0"; sha256="1bwg9m0w5kwv2xggnif1a2qsq5wwl50k4d4bdvi3bx28hrznig71"; depends=[Hmisc SummarizedExperiment sva]; }; + qsvaR = derive2 { name="qsvaR"; version="1.6.0"; sha256="1n018awki3m58r63l7rihzc19si1ri4bwvskdjgys6j2dsrc9wsc"; depends=[ggplot2 SummarizedExperiment sva]; }; + quantiseqr = derive2 { name="quantiseqr"; version="1.10.0"; sha256="01aysyskglbwk6m5m4y8aiav5w60kf2gk8jswlks7zf1c5j02l4y"; depends=[Biobase ggplot2 limSolve MASS preprocessCore rlang SummarizedExperiment tidyr]; }; + quantro = derive2 { name="quantro"; version="1.36.0"; sha256="032qxwgldl1hbgsgb5q3fi7nfg1nx3k0yppqkvim5cif613m1nzq"; depends=[Biobase doParallel foreach ggplot2 iterators minfi RColorBrewer]; }; + quantsmooth = derive2 { name="quantsmooth"; version="1.68.0"; sha256="050nnwhxk3ld615f6ij4cc3d6wzrrxykvv02fr20fg5gzdj0z08a"; depends=[quantreg]; }; + qusage = derive2 { name="qusage"; version="2.36.0"; sha256="1qqsj92fq32j4rbmrnkabnjbyn786c4vxp7qcf99zlpdv0k8ladw"; depends=[Biobase emmeans fftw limma nlme]; }; + qvalue = derive2 { name="qvalue"; version="2.34.0"; sha256="10v5khnrs1fa84d430zy52f9466rwb1byaw1l3c9nivbhmaxhvyi"; depends=[ggplot2 reshape2]; }; + r3Cseq = derive2 { name="r3Cseq"; version="1.48.0"; sha256="1llkfcy13h0c973703jmpgp2n6xxfsizb9iw1wxzgkbp1v0iy268"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges IRanges qvalue RColorBrewer Rsamtools rtracklayer sqldf VGAM]; }; + rBiopaxParser = derive2 { name="rBiopaxParser"; version="2.42.0"; sha256="1zya8r9h93jcpggjlj3v363jmxzwah4mrn2kr2i65lp9lsbb4p17"; depends=[data_table XML]; }; + rCGH = derive2 { name="rCGH"; version="1.32.0"; sha256="1b1n8g0bwkxq090jk330r75sh7aamfbx7d09i784mhaqnrrmfy1z"; depends=[aCGH affy AnnotationDbi DNAcopy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges lattice limma mclust org_Hs_eg_db plyr shiny TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + rDGIdb = derive2 { name="rDGIdb"; version="1.28.0"; sha256="1g4bnf21wygch93j3v0wrpf6qbmcs3alxhbdh8zi874iqv5mfncc"; depends=[httr jsonlite]; }; + rGADEM = derive2 { name="rGADEM"; version="2.50.0"; sha256="14jcsqb56vn67hjmcjjnwswzbilsarkk8kblc715c7da72q7fzpn"; depends=[Biostrings BSgenome GenomicRanges IRanges seqLogo]; }; + rGREAT = derive2 { name="rGREAT"; version="2.4.0"; sha256="09fvmfiavawfwbxaj1585l2n00fibx9z3r17dv06hc6b40a1sa12"; depends=[AnnotationDbi circlize digest doParallel DT foreach GenomeInfoDb GenomicFeatures GenomicRanges GetoptLong GlobalOptions GO_db IRanges org_Hs_eg_db progress RColorBrewer Rcpp RCurl rjson S4Vectors shiny TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + rGenomeTracks = derive2 { name="rGenomeTracks"; version="1.8.0"; sha256="0hdvqri97pbin5hj687ng9alw0wsyh7jx9sfl4n46i1kwlb56ijk"; depends=[imager reticulate rGenomeTracksData]; }; + rRDP = derive2 { name="rRDP"; version="1.36.0"; sha256="0y7l4qqsqfn3l9wvd89vffijqlwkabizidia6sq953f4hardcmrc"; depends=[Biostrings]; }; + rSWeeP = derive2 { name="rSWeeP"; version="1.14.0"; sha256="0r1n5j2g7d5cnd5cwyg40k0r3jmfv21aq8qd566kcd62wl537zim"; depends=[pracma]; }; + rScudo = derive2 { name="rScudo"; version="1.18.0"; sha256="0wc0a7d3fwawbv0p9sja7d9v31vz2xwn96rzgc9ijfxzxfpk56z4"; depends=[Biobase BiocGenerics igraph S4Vectors stringr SummarizedExperiment]; }; + rTRM = derive2 { name="rTRM"; version="1.40.0"; sha256="1qs74lvl5grc8dh9v8awyia9rjbgic7kf4c7ff61dmdglwwjkqak"; depends=[AnnotationDbi DBI igraph RSQLite]; }; + rTRMui = derive2 { name="rTRMui"; version="1.40.0"; sha256="1kp27wmqb6hrd2zghss36sail03acdvf3md44xvij2c0q1xn5pxm"; depends=[MotifDb org_Hs_eg_db org_Mm_eg_db rTRM shiny]; }; + rWikiPathways = derive2 { name="rWikiPathways"; version="1.22.1"; sha256="1d4kjdqafkky99w6mx32bc2p7m4lfrq8f7sdg8ixzgnw5w5kppwp"; depends=[data_table dplyr httr lubridate purrr RCurl readr rjson stringr tidyr XML]; }; + raer = derive2 { name="raer"; version="1.0.0"; sha256="1sccgmz9xgbbia9gz7ih65l69xxn6s94dbpyswj1gy03mphyw1s6"; depends=[BiocGenerics BiocParallel Biostrings BSgenome cli data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Matrix R_utils Rhtslib Rsamtools rtracklayer S4Vectors SingleCellExperiment SummarizedExperiment]; }; + rain = derive2 { name="rain"; version="1.36.0"; sha256="0cf98khyjdnm1qpdnbmk9wnc2yicjddsq61dzp59z9sr0gqbljmy"; depends=[gmp multtest]; }; + ramr = derive2 { name="ramr"; version="1.10.0"; sha256="1j32jg5z77wic1radm7kxqzvx14bc5llaad1j21s3g825z5g98y4"; depends=[BiocGenerics doParallel doRNG EnvStats ExtDist foreach GenomicRanges ggplot2 IRanges matrixStats reshape2 S4Vectors]; }; + ramwas = derive2 { name="ramwas"; version="1.26.0"; sha256="0nldil34iji00flczvcmkrkfl8ywi7ms96ki28ywf0lcrjdc8hjb"; depends=[BiocGenerics biomaRt Biostrings digest filematrix GenomicAlignments glmnet KernSmooth Rsamtools]; }; + randPack = derive2 { name="randPack"; version="1.48.0"; sha256="1qf188l25n8rzg8lzqnbkz73xwvjcj5s0x9sr5qgxy95jbf0qqfk"; depends=[Biobase]; }; + randRotation = derive2 { name="randRotation"; version="1.14.0"; sha256="0lsw29mhzq017j22a3wb3dlyyrads8c2bkdb5m1bhsiwgg124wsr"; depends=[Rdpack]; }; + rawrr = derive2 { name="rawrr"; version="1.10.2"; sha256="1wygx3qpsl518wgjhcp69r5bkcg7k30jafl9zzbd6m972mbc6pqh"; depends=[]; }; + rbsurv = derive2 { name="rbsurv"; version="2.60.0"; sha256="01ksmdhzj8ra2is2j9np1l4b96kxyrmbvnfzmmvc43n7fvbv9ach"; depends=[Biobase survival]; }; + rcellminer = derive2 { name="rcellminer"; version="2.24.0"; sha256="1h2x16b8ad27mmdhx8ary5l2wsgarfldi93ib3iv0iaj7ip2nvjw"; depends=[Biobase ggplot2 gplots rcellminerData shiny stringr]; }; + rebook = derive2 { name="rebook"; version="1.12.0"; sha256="0ybd6klki4drb0kq45sf36vz2811cr9qmizi9vjf2j6ab7x3m0b4"; depends=[BiocStyle CodeDepends dir_expiry filelock knitr rmarkdown]; }; + receptLoss = derive2 { name="receptLoss"; version="1.14.0"; sha256="0rdapj58cfxl7jv5bk4jradx6rzq7g3r3vv7p0zwvl0b16ixgcjc"; depends=[dplyr ggplot2 magrittr SummarizedExperiment tidyr]; }; + reconsi = derive2 { name="reconsi"; version="1.14.0"; sha256="1siwbbrlbqid8vwf0a4rx9y0h1w21lh4y51jm83dfspnhh2dvya9"; depends=[ggplot2 ks Matrix matrixStats phyloseq reshape2]; }; + recount = derive2 { name="recount"; version="1.28.0"; sha256="1nn2fr4ycr7ki9kf00g4lhz1g46lnd9jf813x2ss7ryfzkrkfq7g"; depends=[BiocParallel derfinder downloader GenomeInfoDb GenomicRanges GEOquery IRanges RCurl rentrez rtracklayer S4Vectors SummarizedExperiment]; }; + recount3 = derive2 { name="recount3"; version="1.12.0"; sha256="0zn4jl197wgri3kyvhh2p3s15fzl66km6kbl2yczy000fhryfijl"; depends=[BiocFileCache data_table GenomicRanges httr Matrix R_utils rtracklayer S4Vectors sessioninfo SummarizedExperiment]; }; + recountmethylation = derive2 { name="recountmethylation"; version="1.12.0"; sha256="1zv72m9n1vwv1qvlv1700vxlxrwzncjqqf8lqac4792aqwykl78l"; depends=[basilisk BiocFileCache DelayedMatrixStats HDF5Array minfi R_utils RCurl reticulate rhdf5 S4Vectors]; }; + recoup = derive2 { name="recoup"; version="1.30.0"; sha256="1c2kpqbvax1wms0d1mxv8vyqmj9h1xn3wxzqnvd2xwfhy57k29kw"; depends=[BiocGenerics biomaRt Biostrings circlize ComplexHeatmap GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 httr IRanges Rsamtools RSQLite rtracklayer S4Vectors stringr]; }; + regionReport = derive2 { name="regionReport"; version="1.36.0"; sha256="1nki9k66fv77499zvi7k1vlnxwfiyp09ylirqvavjlgyb9j6avk7"; depends=[BiocStyle DEFormats derfinder DESeq2 GenomeInfoDb GenomicRanges knitr knitrBootstrap RefManageR rmarkdown S4Vectors SummarizedExperiment]; }; + regionalpcs = derive2 { name="regionalpcs"; version="1.0.0"; sha256="0ga0x7k4ll656i40caa06jz3yd9hsvvynr0ypw58yznwamixssp1"; depends=[dplyr GenomicRanges PCAtools tibble]; }; + regioneR = derive2 { name="regioneR"; version="1.34.0"; sha256="1qcgbj7d2fngs3p9a9apnj14x35kc651fy3m0651dnqrxz8j5yij"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges memoise rtracklayer S4Vectors]; }; + regioneReloaded = derive2 { name="regioneReloaded"; version="1.4.0"; sha256="05ac0ba7zl0sb1b2nrihpwa8y4ys5zwn2qgg7mzaj9vapscyw0sl"; depends=[cluster ggplot2 ggrepel RColorBrewer regioneR reshape2 Rtsne scales umap]; }; + regsplice = derive2 { name="regsplice"; version="1.28.0"; sha256="01ii3aijf57j77d7y9qn6bx6s8v5zs034hhyq0r41lxpz2sn48vb"; depends=[edgeR glmnet limma pbapply S4Vectors SummarizedExperiment]; }; + regutools = derive2 { name="regutools"; version="1.14.0"; sha256="1mvlihb4ps8616wvs9vyg4x6h1h6gj8psy3bmqmj5y6lb09dgfs5"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings DBI GenomicRanges Gviz IRanges RCy3 RSQLite S4Vectors]; }; + restfulSE = derive2 { name="restfulSE"; version="1.24.0"; sha256="0i40yfvynxy34jfkvzyvjwvxf89zi4pvy9m9i0bk93l17gyhnjyl"; depends=[AnnotationDbi AnnotationHub bigrquery Biobase DBI DelayedArray dplyr ExperimentHub GO_db magrittr reshape2 rhdf5client rlang S4Vectors SummarizedExperiment]; }; + retrofit = derive2 { name="retrofit"; version="1.2.0"; sha256="0rsrj70xbzdvbv34p9r0cgw2gkknmccrpsyykhm3l1c1aa1hh8md"; depends=[Rcpp]; }; + rexposome = derive2 { name="rexposome"; version="1.24.1"; sha256="16bshcja07s500xcibr8yqlmbzp7plq1fqajj4gj1gvqi7bix8j4"; depends=[Biobase circlize corrplot FactoMineR ggplot2 ggrepel ggridges glmnet gplots gridExtra gtools Hmisc imputeLCMD lme4 lsr mice pryr reshape2 S4Vectors scales scatterplot3d stringr]; }; + rfPred = derive2 { name="rfPred"; version="1.40.0"; sha256="10llzfwjdwppqs8mskn3ivifc743vf79fkw8cicqv29nc80r8p7h"; depends=[data_table GenomeInfoDb GenomicRanges IRanges Rsamtools]; }; + rfaRm = derive2 { name="rfaRm"; version="1.14.0"; sha256="1bsv8ihnis899f89krsz2rfqxn0dgh2rkjzr7wlqh3pgg232lw1k"; depends=[Biostrings data_table httr IRanges jsonlite magick rsvg rvest S4Vectors stringi xml2]; }; + rgoslin = derive2 { name="rgoslin"; version="1.6.0"; sha256="06riq52zrjmp0hf3ik5hra3b0dawaqggagaq3ixz54bbx7nriv6w"; depends=[dplyr Rcpp]; }; + rgsepd = derive2 { name="rgsepd"; version="1.34.0"; sha256="1g1h66hbb29hsvjzdyg4s84ihifpqjw0xqm1rrcaqd5l60n8mx4j"; depends=[AnnotationDbi biomaRt DESeq2 GO_db goseq gplots org_Hs_eg_db SummarizedExperiment]; }; + rhdf5 = derive2 { name="rhdf5"; version="2.46.1"; sha256="0yfy0y9ywzbbdmvvraxmizv3w2x1iznhfys6hhwyi644pxh4k3xn"; depends=[rhdf5filters Rhdf5lib S4Vectors]; }; + rhdf5client = derive2 { name="rhdf5client"; version="1.24.0"; sha256="0mjijy15gbdp85nnb10xpz95g2wvcy0mfcwx9sl38k1wqx6i86s4"; depends=[data_table DelayedArray httr rjson]; }; + rhdf5filters = derive2 { name="rhdf5filters"; version="1.14.1"; sha256="0cqf7k19k4m4swd2c1wd9cyzw9k90s3d3jq0hijjwvza50nn2dk6"; depends=[Rhdf5lib]; }; + riboSeqR = derive2 { name="riboSeqR"; version="1.36.0"; sha256="1cigbp3pc70ipja9mmprkrs91723r1zwgxbzyp87n5mb0i4q8xqh"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools seqLogo]; }; + ribor = derive2 { name="ribor"; version="1.14.0"; sha256="12hnrw5y776k0kvd5n661gqq97zgx7vk0xbil21rqlm4cgnfplza"; depends=[dplyr ggplot2 hash rhdf5 rlang S4Vectors tidyr yaml]; }; + ribosomeProfilingQC = derive2 { name="ribosomeProfilingQC"; version="1.14.0"; sha256="1r3clyd33djnkaqmj653nn4jsx2zbwbrvfyps9j61rl7csg4cdd5"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome cluster EDASeq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfittext ggplot2 ggrepel IRanges motifStack Rsamtools Rsubread rtracklayer RUVSeq S4Vectors scales XVector]; }; + rifi = derive2 { name="rifi"; version="1.6.0"; sha256="0d0nwwz66sasg7nisakqbknz2sgjj7ky3sa1rqhhp1gncwrmbsl2"; depends=[car cowplot doMC dplyr egg foreach ggplot2 nls2 nnet reshape2 rlang rtracklayer S4Vectors scales stringr SummarizedExperiment tibble]; }; + rifiComparative = derive2 { name="rifiComparative"; version="1.2.0"; sha256="16byiqq5d9lk8dkf5ij86l1dhlzjhry0dwnrsg1ci1np1mqwnx9i"; depends=[cowplot devtools doMC dplyr DTA egg foreach ggplot2 ggrepel LSD nnet reshape2 rlang rtracklayer S4Vectors scales stringr SummarizedExperiment tibble writexl]; }; + rmelting = derive2 { name="rmelting"; version="1.18.0"; sha256="14cimxjdzan3nidzjxvndpp75r04xxnqw522a9bnvyjy9cfjfa54"; depends=[Rdpack rJava]; }; + rmspc = derive2 { name="rmspc"; version="1.8.0"; sha256="0fkigy33rn5vrpz4603d2npcc4k271hm3wz6cbwrgngvzk731ggq"; depends=[BiocManager GenomicRanges processx rtracklayer stringr]; }; + rnaEditr = derive2 { name="rnaEditr"; version="1.12.0"; sha256="04aayj38kwq4v43dkmi5cddkasp1vn4iy1k3zdgywhzj4j9lyhbv"; depends=[BiocGenerics bumphunter corrplot GenomeInfoDb GenomicRanges IRanges logistf plyr S4Vectors survival]; }; + rnaseqcomp = derive2 { name="rnaseqcomp"; version="1.32.0"; sha256="0ynlpl3x51b1ayrjs7vgd173nh7avdxc78rlfdfabvb4xx5mc0dy"; depends=[RColorBrewer]; }; + roar = derive2 { name="roar"; version="1.38.0"; sha256="0pibk6zdqlbm0rxnb95pd94v6lbg67rwmjnpfxizq7wv36pw6kdr"; depends=[BiocGenerics GenomeInfoDb GenomicAlignments GenomicRanges IRanges rtracklayer S4Vectors SummarizedExperiment]; }; + roastgsa = derive2 { name="roastgsa"; version="1.0.0"; sha256="1dk1b0xhglnhd1x50qyr55h2kdqyma685pgdv1bmw8sl0xhq6pbh"; depends=[Biobase ggplot2 gplots limma RColorBrewer]; }; + rols = derive2 { name="rols"; version="2.30.0"; sha256="0jwhgpz7lggw783sabypmy122b6d6pmvsvhb7zhmsrld2zw2pqwx"; depends=[Biobase BiocGenerics httr jsonlite progress]; }; + ropls = derive2 { name="ropls"; version="1.34.0"; sha256="1k3j1cbapzqk0qr3v4gijskp487xyz2n4lv4kia9y5pmplddxp7v"; depends=[Biobase ggplot2 MultiAssayExperiment MultiDataSet plotly SummarizedExperiment]; }; + rprimer = derive2 { name="rprimer"; version="1.6.0"; sha256="1h47cxa6zi40qir768zblkfjp04928ap1lc1axrcgvpjx70wc9k3"; depends=[Biostrings bslib DT ggplot2 IRanges mathjaxr patchwork reshape2 S4Vectors shiny shinycssloaders shinyFeedback]; }; + rpx = derive2 { name="rpx"; version="2.10.0"; sha256="03hxvq5gqchspcm2rg554i7p6zfy62ygl8509ir5ag9b6vkr5ia8"; depends=[BiocFileCache curl jsonlite RCurl xml2]; }; + rqt = derive2 { name="rqt"; version="1.28.0"; sha256="02yvwp68c0xx1wa41hfwmq5zjskqk3jg6z1hvivi6x3l5g2xfwah"; depends=[car CompQuadForm glmnet Matrix metap pls ropls RUnit SummarizedExperiment]; }; + rqubic = derive2 { name="rqubic"; version="1.48.0"; sha256="0f0if8b50ljdz2i7435knylx52wndilsvjmlj31gcqy5i3k6mz9y"; depends=[biclust Biobase BiocGenerics]; }; + rrvgo = derive2 { name="rrvgo"; version="1.14.1"; sha256="1z1l7l4iac6idzigv7y58i03gmv929mgjywhac5ppnzhxlyh2n3a"; depends=[AnnotationDbi ggplot2 ggrepel GO_db GOSemSim pheatmap shiny tm treemap umap wordcloud]; }; + rsbml = derive2 { name="rsbml"; version="2.60.0"; sha256="0pvj0qgc6hd02g9ppfc610gvfn412rw69rxh43y4dr3n894kdm2i"; depends=[BiocGenerics graph]; }; + rsemmed = derive2 { name="rsemmed"; version="1.12.0"; sha256="114nnx0m7w0bsdlw2imn8dwbmcr30pykkhd7qxcb5md4xy2sw8b1"; depends=[dplyr igraph magrittr stringr]; }; + rtracklayer = derive2 { name="rtracklayer"; version="1.62.0"; sha256="1jxhv2fq62lz0j6kbwq43c8ggk14ccsjg0xgfqjqy941dj9ig0n2"; depends=[BiocGenerics BiocIO Biostrings GenomeInfoDb GenomicAlignments GenomicRanges IRanges RCurl restfulr Rsamtools S4Vectors XML XVector zlibbioc]; }; + runibic = derive2 { name="runibic"; version="1.24.0"; sha256="0rkpjm6kgmiy0as8mdnpdassvp5d0jn3iyn8dbra1i7b7bdrmcqd"; depends=[biclust Rcpp SummarizedExperiment testthat]; }; + sRACIPE = derive2 { name="sRACIPE"; version="1.18.0"; sha256="0yq3spb36r2pg5g9l32k3vinknppgz14pr4dpwcvxpilip14ha2v"; depends=[BiocGenerics ggplot2 gplots gridExtra htmlwidgets MASS RColorBrewer Rcpp reshape2 S4Vectors SummarizedExperiment umap visNetwork]; }; + sSNAPPY = derive2 { name="sSNAPPY"; version="1.6.1"; sha256="0wials3phh0w3c5bb3zg5lr52gwmx65q2s7ar1g935ghrsr3r523"; depends=[dplyr edgeR ggforce ggplot2 ggraph graphite gtools igraph magrittr org_Hs_eg_db pheatmap reshape2 rlang stringr SummarizedExperiment tibble tidyr]; }; + sSeq = derive2 { name="sSeq"; version="1.40.0"; sha256="1jn5iviaksqlknwrc8xixliysia81wyy6h04fkyz1z1kvbly1g8h"; depends=[caTools RColorBrewer]; }; + safe = derive2 { name="safe"; version="3.42.0"; sha256="1x0sx29mmhgqb0xalvd132v888qk2fzkxvz7h4873f2lzpz6yl2q"; depends=[AnnotationDbi Biobase SparseM]; }; + sagenhaft = derive2 { name="sagenhaft"; version="1.72.0"; sha256="01ccb2jw8wc36l980yqacczd2h55nipkxzcb20c04zlrwxckg0sv"; depends=[SparseM]; }; + sampleClassifier = derive2 { name="sampleClassifier"; version="1.26.0"; sha256="0qg08r50fjvfgiznh9cqwdfdpxn4qdbbfxds707wlxw40xfbndz7"; depends=[annotate e1071 ggplot2 MGFM MGFR]; }; + sangeranalyseR = derive2 { name="sangeranalyseR"; version="1.12.0"; sha256="0db96nfyw0fiwgwhflwhnr1sha56n3jhld05333xq9fkj89fzf15"; depends=[ape BiocStyle Biostrings data_table DECIPHER DT excelR ggdendro gridExtra knitr logger openxlsx phangorn plotly reshape2 rmarkdown sangerseqR seqinr shiny shinycssloaders shinydashboard shinyjs shinyWidgets stringr zeallot]; }; + sangerseqR = derive2 { name="sangerseqR"; version="1.38.0"; sha256="1vggjvxfmmm2gcyfay22wahkib15i164ic148jdps36pxapl6hi3"; depends=[Biostrings shiny stringr]; }; + sarks = derive2 { name="sarks"; version="1.14.0"; sha256="03zq00kd7kzmz6dl372fpimbh7lr4l2i661mvw634k77p1wmcl24"; depends=[binom Biostrings cluster IRanges rJava]; }; + satuRn = derive2 { name="satuRn"; version="1.10.0"; sha256="12bivj0cnp38apwi3jqmil8bwsfa96cjp5f132a5raacd2z87gqf"; depends=[BiocParallel boot ggplot2 limma locfdr Matrix pbapply SummarizedExperiment]; }; + scAnnotatR = derive2 { name="scAnnotatR"; version="1.8.0"; sha256="13wrxxdwphngi0f9vxakykk54bqngw8g38w6wkk96999lzb3p57p"; depends=[AnnotationHub ape caret data_tree dplyr e1071 ggplot2 kernlab pROC ROCR Seurat SingleCellExperiment SummarizedExperiment]; }; + scBFA = derive2 { name="scBFA"; version="1.16.0"; sha256="10b4vkc19y48w5xmx8c82yrrz2zpdg43m9rhnqfr63vlw06cgid3"; depends=[copula DESeq2 ggplot2 MASS Matrix Seurat SingleCellExperiment SummarizedExperiment zinbwave]; }; + scBubbletree = derive2 { name="scBubbletree"; version="1.4.0"; sha256="0cwmwwdbafjcrsxvjps5csffj0n1mmagccbawpwqsjqfn5j55v2j"; depends=[ape future future_apply ggplot2 ggtree patchwork proxy reshape2 scales Seurat]; }; + scCB2 = derive2 { name="scCB2"; version="1.12.0"; sha256="0v66javzwwmx0k3p9sx8r8alhjd6qmxp75vrd2nhyp9iq3gdnz7l"; depends=[doParallel DropletUtils edgeR foreach iterators Matrix rhdf5 Seurat SingleCellExperiment SummarizedExperiment]; }; + scClassify = derive2 { name="scClassify"; version="1.14.0"; sha256="1il45fr3fq520jg2hi1b729wg82vhr826x9bh6lli743sjl2rmbf"; depends=[BiocParallel Cepo cluster diptest ggplot2 ggraph hopach igraph limma Matrix mgcv minpack_lm mixtools proxy proxyC S4Vectors statmod]; }; + scDD = derive2 { name="scDD"; version="1.26.0"; sha256="15hzsq8ckw8v8ccz30kia9qr1iymmcszc9z31g5arrx1y816zgbq"; depends=[arm BiocParallel EBSeq fields ggplot2 mclust outliers S4Vectors scran SingleCellExperiment SummarizedExperiment]; }; + scDDboost = derive2 { name="scDDboost"; version="1.4.0"; sha256="11vgnxijip34yaqgnaq90pwnd1ibslfyij1lyqi3mdzrwd8a6az9"; depends=[BH BiocParallel cluster EBSeq ggplot2 mclust Oscope Rcpp RcppEigen SingleCellExperiment SummarizedExperiment]; }; + scDataviz = derive2 { name="scDataviz"; version="1.12.0"; sha256="1h8mkxbjc94x9cwpq6i26hfvd810sjdjzbf3p8v8b43c4984j0a7"; depends=[corrplot flowCore ggplot2 ggrepel MASS matrixStats RColorBrewer reshape2 S4Vectors scales Seurat SingleCellExperiment umap]; }; + scDblFinder = derive2 { name="scDblFinder"; version="1.16.0"; sha256="1f3n1m6fjx965wm2jllzk51ssj92ifxb4bln4vwk25qxd3g0bna8"; depends=[BiocGenerics BiocNeighbors BiocParallel BiocSingular bluster DelayedArray GenomeInfoDb GenomicRanges igraph IRanges MASS Matrix Rsamtools rtracklayer S4Vectors scater scran scuttle SingleCellExperiment SummarizedExperiment xgboost]; }; + scDesign3 = derive2 { name="scDesign3"; version="1.0.0"; sha256="1p6mnjhk42k8341kibaw16ai0kpyn0azkqdls5hwhbkysxpmb6i2"; depends=[BiocParallel dplyr gamlss gamlss_dist ggplot2 irlba Matrix matrixStats mclust mgcv mvtnorm pbmcapply rvinecopulib SingleCellExperiment SummarizedExperiment tibble umap viridis]; }; + scFeatureFilter = derive2 { name="scFeatureFilter"; version="1.22.0"; sha256="0kh9m9fxfankkhy4f9f30smpdzwf62s0brdqwg2g75cyj8jxg9vv"; depends=[dplyr ggplot2 magrittr rlang tibble]; }; + scFeatures = derive2 { name="scFeatures"; version="1.2.0"; sha256="095ggysbs1jwzpcx58d1czprrw2rd0zhapsrij2c923mjxixcxwp"; depends=[ape AUCell BiocParallel cli DelayedArray DelayedMatrixStats dplyr DT EnsDb_Hsapiens_v79 EnsDb_Mmusculus_v79 ensembldb glue GSVA gtools MatrixGenerics msigdbr proxyC reshape2 rmarkdown Seurat SingleCellSignalR SpatialExperiment spatstat_explore spatstat_geom SummarizedExperiment tidyr]; }; + scGPS = derive2 { name="scGPS"; version="1.16.0"; sha256="1xp43by8p1hfj10ypiqz3lv7knyz6pf9dn9hfmjwv1168qx42c1s"; depends=[caret DESeq2 dplyr dynamicTreeCut fastcluster ggplot2 glmnet locfit Rcpp RcppArmadillo RcppParallel SingleCellExperiment SummarizedExperiment]; }; + scHOT = derive2 { name="scHOT"; version="1.14.0"; sha256="0r3018i7pfa3l1cg248ry7pgxkizml3nyb10nk3jhf8aikigxpvl"; depends=[BiocParallel ggforce ggplot2 igraph IRanges Matrix reshape S4Vectors SingleCellExperiment SummarizedExperiment]; }; + scMET = derive2 { name="scMET"; version="1.4.0"; sha256="0akz032hrzdv2q5d6snhv1v1cw95w1d8lr2jdg93wajbl6c8x45l"; depends=[assertthat BH BiocStyle coda cowplot data_table dplyr ggplot2 logitnorm MASS Matrix matrixStats Rcpp RcppEigen RcppParallel rstan rstantools S4Vectors SingleCellExperiment StanHeaders SummarizedExperiment VGAM viridis]; }; + scMerge = derive2 { name="scMerge"; version="1.18.0"; sha256="1j5a95sz00hc3k09gkmd0icpcxfdqws6rw64n3p66v18dpkmngw4"; depends=[batchelor BiocNeighbors BiocParallel BiocSingular cluster cvTools DelayedArray DelayedMatrixStats distr igraph M3Drop proxyC ruv S4Vectors scater scran SingleCellExperiment SummarizedExperiment]; }; + scPCA = derive2 { name="scPCA"; version="1.16.0"; sha256="06vwsdly812h80bnxdl52bzymib55dw83ahg7g18dzqm141gazf2"; depends=[assertthat BiocParallel cluster coop DelayedArray dplyr elasticnet kernlab Matrix MatrixGenerics matrixStats origami purrr Rdpack RSpectra ScaledMatrix sparsepca stringr tibble]; }; + scPipe = derive2 { name="scPipe"; version="2.2.0"; sha256="0rxfni95149vrjwlgygkxbn70fd21vz53srvz7l74lwrg5jrk21g"; depends=[AnnotationDbi basilisk BiocGenerics biomaRt Biostrings data_table dplyr DropletUtils flexmix GenomicAlignments GenomicRanges GGally ggplot2 glue hash IRanges magrittr MASS Matrix mclust MultiAssayExperiment org_Hs_eg_db org_Mm_eg_db purrr Rcpp reshape reticulate Rhtslib rlang robustbase Rsamtools Rsubread rtracklayer S4Vectors scales SingleCellExperiment stringr SummarizedExperiment testthat tibble tidyr vctrs zlibbioc]; }; + scRNAseqApp = derive2 { name="scRNAseqApp"; version="1.2.2"; sha256="18780dicp4dl8fqnmvsn345lkcjn8398qbpd1iapiyww7yychij9"; depends=[bibtex bslib circlize ComplexHeatmap data_table DT GenomeInfoDb GenomicRanges ggdendro ggforce ggplot2 ggrepel ggridges gridExtra hdf5r htmltools IRanges jsonlite magrittr patchwork plotly RColorBrewer RefManageR Rsamtools rtracklayer S4Vectors scales scrypt Seurat SeuratObject shiny shinyhelper shinymanager SingleCellExperiment slingshot sortable xfun xml2]; }; + scReClassify = derive2 { name="scReClassify"; version="1.8.0"; sha256="11cr0ri73c1khimcwvr125hpllmchm8s78qql838nzdm92w854ph"; depends=[e1071 randomForest SingleCellExperiment SummarizedExperiment]; }; + scRecover = derive2 { name="scRecover"; version="1.18.0"; sha256="17sqn7dqwis3xx230hw8cvajan4ravd4kkzkgwm6jjph7rahix1l"; depends=[bbmle BiocParallel doParallel foreach gamlss kernlab MASS Matrix penalized preseqR pscl rsvd SAVER]; }; + scRepertoire = derive2 { name="scRepertoire"; version="1.12.0"; sha256="1wgs8dv5zl82iciy86w5ws1gq8v2piklcifbw7gmbw60kijyr2l1"; depends=[doParallel dplyr ggalluvial ggplot2 ggraph igraph plyr powerTCR reshape2 rlang SeuratObject SingleCellExperiment stringdist stringr SummarizedExperiment tidygraph vegan]; }; + scShapes = derive2 { name="scShapes"; version="1.8.0"; sha256="16ixxrg32hwb22vqfskg6amk9axrz8f9x8q6cqnhz5pg2ix79yw9"; depends=[BiocParallel dgof emdbook magrittr MASS Matrix pscl VGAM]; }; + scTGIF = derive2 { name="scTGIF"; version="1.16.0"; sha256="1rxzqs3ggxg21yxl7drvrix106y8z798xs57jc4jpwvvbbzi89r0"; depends=[Biobase BiocStyle ggplot2 GSEABase igraph knitr msigdbr nnTensor plotly RColorBrewer Rcpp rmarkdown S4Vectors scales schex SingleCellExperiment SummarizedExperiment tagcloud tibble]; }; + scTHI = derive2 { name="scTHI"; version="1.14.0"; sha256="1iks7b6sx6b0l3037h8yxnwd6025wh6almkiwny356pwm45vzdqx"; depends=[BiocParallel Rtsne]; }; + scTensor = derive2 { name="scTensor"; version="2.12.0"; sha256="1lq1gq3pl09g0ky4nx191qja3pdcww6qazg6nrfssx4jxcc0q97i"; depends=[abind AnnotationDbi AnnotationHub BiocManager BiocStyle Category ccTensor checkmate crayon DOSE ggplot2 GOstats heatmaply igraph knitr MeSHDbi meshr nnTensor outliers plotly plotrix reactome_db ReactomePA rmarkdown RSQLite rTensor S4Vectors schex SingleCellExperiment SummarizedExperiment tagcloud visNetwork]; }; + scTreeViz = derive2 { name="scTreeViz"; version="1.8.0"; sha256="06js9576w3nlqfl58p7wmdinymlxkf62zl4lxjhzyy6aaqbdqcmp"; depends=[clustree data_table digest epivizr epivizrData epivizrServer ggplot2 ggraph httr igraph Matrix Rtsne S4Vectors scater scran Seurat SingleCellExperiment SummarizedExperiment sys]; }; + scanMiR = derive2 { name="scanMiR"; version="1.8.0"; sha256="1774gbxx9l992f8v6q223kk9n6s86c48hvnymy8v0axkd7jl4k9b"; depends=[BiocParallel Biostrings cowplot data_table GenomeInfoDb GenomicRanges ggplot2 IRanges S4Vectors stringi]; }; + scanMiRApp = derive2 { name="scanMiRApp"; version="1.8.0"; sha256="1rinvm4m1fr8yrnk75qnjqak2wybjzivj32bhkypbjlmjfippff9"; depends=[AnnotationDbi AnnotationFilter AnnotationHub BiocParallel Biostrings data_table digest DT ensembldb fst GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 htmlwidgets IRanges Matrix plotly rintrojs rtracklayer S4Vectors scanMiR scanMiRData shiny shinycssloaders shinydashboard shinyjqui waiter]; }; + scater = derive2 { name="scater"; version="1.30.1"; sha256="06a4nxxsgmi435m06ir401w4fbrh0xdgh6mkv3i7vw001yrbrfcx"; depends=[beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray ggbeeswarm ggplot2 ggrastr ggrepel Matrix MatrixGenerics pheatmap RColorBrewer RcppML rlang Rtsne S4Vectors scuttle SingleCellExperiment SummarizedExperiment uwot viridis]; }; + scatterHatch = derive2 { name="scatterHatch"; version="1.8.0"; sha256="1skl8v6idxdb6qqmljfvp4693r1whyddimpcg8m7rsd8cbgq3fal"; depends=[ggplot2 plyr spatstat_geom]; }; + sccomp = derive2 { name="sccomp"; version="1.6.0"; sha256="19cpgif7zjlzbvnqflyzi3gcl29v91xan0v45y5gyisxp1p23x6i"; depends=[BH boot dplyr forcats ggplot2 ggrepel glue lifecycle magrittr patchwork purrr Rcpp RcppEigen RcppParallel readr rlang rstan rstantools scales SeuratObject SingleCellExperiment StanHeaders stringr tibble tidyr tidyselect]; }; + scde = derive2 { name="scde"; version="2.30.0"; sha256="0l7sfqj6kfpq0jdngxc4n87pvqk8rxd0rr6jvz5hhq4hmlm417hs"; depends=[BiocParallel Cairo edgeR extRemes flexmix MASS mgcv nnet pcaMethods quantreg RColorBrewer Rcpp RcppArmadillo rjson RMTstat Rook]; }; + scds = derive2 { name="scds"; version="1.18.0"; sha256="0cmzvc1m29ijhzs2p407bhhxfqbflzsnrk7nq0jshjyw6v6pkfn0"; depends=[dplyr Matrix pROC S4Vectors SingleCellExperiment SummarizedExperiment xgboost]; }; + schex = derive2 { name="schex"; version="1.16.0"; sha256="0mg6kkzdqqnbdqvzl8iv3b2900ablkhgq75grwqxrrzv9a8lh2m4"; depends=[cluster concaveman dplyr entropy ggforce ggplot2 hexbin scales Seurat shiny SingleCellExperiment]; }; + scider = derive2 { name="scider"; version="1.0.0"; sha256="1rl7h5gxvd6ga3ylnvslarxhd7njf64izx8r8digl61gm866cm0b"; depends=[ggplot2 igraph isoband janitor knitr lwgeom pheatmap plotly rlang S4Vectors sf shiny SpatialExperiment spatstat_explore spatstat_geom SummarizedExperiment]; }; + scifer = derive2 { name="scifer"; version="1.4.0"; sha256="1h9py0l8glcpwb2rwqksq2p4gs7pp754xgfcm6zcmik5jxl9zmyb"; depends=[Biostrings data_table DECIPHER dplyr flowCore ggplot2 gridExtra kableExtra knitr plyr rlang rmarkdown sangerseqR scales stringr tibble]; }; + scmap = derive2 { name="scmap"; version="1.24.0"; sha256="1sd5ixs8fbiqqp1p4p505l1f0lncmagkhzh4xrk8wrca6db6k6d8"; depends=[Biobase BiocGenerics dplyr e1071 ggplot2 googleVis matrixStats proxy randomForest Rcpp RcppArmadillo reshape2 S4Vectors SingleCellExperiment SummarizedExperiment]; }; + scmeth = derive2 { name="scmeth"; version="1.22.0"; sha256="02v1dn1lvnvlig02wl9rqal3qz7hllfpyzjf1mwyasr7qk8wbn0p"; depends=[AnnotationHub annotatr Biostrings BSgenome bsseq DelayedArray DT GenomeInfoDb GenomicRanges HDF5Array knitr reshape2 rmarkdown SummarizedExperiment]; }; + scone = derive2 { name="scone"; version="1.26.0"; sha256="1y0blhh75hb60h9jmvz2naqfzky4zgw5gn81fbj74jfph9y712lp"; depends=[aroma_light BiocParallel boot class cluster compositions diptest edgeR fpc gplots hexbin limma MatrixGenerics matrixStats mixtools rARPACK RColorBrewer rhdf5 RUVSeq SingleCellExperiment SummarizedExperiment]; }; + scoreInvHap = derive2 { name="scoreInvHap"; version="1.24.0"; sha256="0j1gn1vwxsmg0h1znc2cqa4q3qx9fw4bnxcdmwcd7fpk860ifa49"; depends=[BiocParallel Biostrings GenomicRanges snpStats SummarizedExperiment VariantAnnotation]; }; + scp = derive2 { name="scp"; version="1.12.0"; sha256="0xcm3hw6fz62fm3rvwcmh6mn0pi38hzyprrrnk0xw0y75yh03czh"; depends=[dplyr magrittr matrixStats MsCoreUtils MultiAssayExperiment QFeatures S4Vectors SingleCellExperiment SummarizedExperiment]; }; + scran = derive2 { name="scran"; version="1.30.0"; sha256="0vq3216jk389mjnz5kx0i6fwmkypp21rshvv9ldcy327h6vk1ylj"; depends=[beachmat BH BiocGenerics BiocParallel BiocSingular bluster DelayedArray DelayedMatrixStats dqrng edgeR igraph limma Matrix metapod Rcpp S4Vectors scuttle SingleCellExperiment statmod SummarizedExperiment]; }; + screenCounter = derive2 { name="screenCounter"; version="1.2.0"; sha256="1yk81k7fr71mb1q984czw9iaddhd9brv4raag5b8h6hgsca516d9"; depends=[BiocParallel Rcpp S4Vectors SummarizedExperiment zlibbioc]; }; + scruff = derive2 { name="scruff"; version="1.20.0"; sha256="0zn4pf3pd2rss7z7p3q55fh8345am8bd1dcapchwzc02k9szc466"; depends=[AnnotationDbi BiocGenerics BiocParallel Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 ggthemes parallelly plyr Rsamtools Rsubread rtracklayer S4Vectors scales ShortRead SingleCellExperiment stringdist SummarizedExperiment]; }; + scry = derive2 { name="scry"; version="1.14.0"; sha256="0hbdsjsn0jl0dr2ly5vx0wb4bnz7nl15kkypryywjvis9rdasjj3"; depends=[BiocSingular DelayedArray glmpca Matrix SingleCellExperiment SummarizedExperiment]; }; + scuttle = derive2 { name="scuttle"; version="1.12.0"; sha256="090arfacfs09x7g60qxz4bj2gqb97y3kmhafywkgnrj7pz1z0qzq"; depends=[beachmat BiocGenerics BiocParallel DelayedArray DelayedMatrixStats GenomicRanges Matrix Rcpp S4Vectors SingleCellExperiment SummarizedExperiment]; }; + scviR = derive2 { name="scviR"; version="1.2.0"; sha256="1naz8xampnig1pjjjsk8mabsqdys2idpjnplgj33qj7ivkwxw58a"; depends=[basilisk BiocFileCache limma MatrixGenerics pheatmap reticulate S4Vectors scater shiny SingleCellExperiment SummarizedExperiment]; }; + sechm = derive2 { name="sechm"; version="1.10.0"; sha256="19qb6qvzgvwd7y1nmvw9q8ch8ql27f3hhxk42w805l4r4d7xrkbk"; depends=[circlize ComplexHeatmap matrixStats randomcoloR S4Vectors seriation SummarizedExperiment]; }; + segmentSeq = derive2 { name="segmentSeq"; version="2.36.0"; sha256="1w037ylknsraj96j1bcv671zx3fqcck666pakmqgjprlp97k5sdy"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors ShortRead]; }; + segmenter = derive2 { name="segmenter"; version="1.8.0"; sha256="19zd2a8rghclyvb7561qijr0g1c32dqcb73bpdjwaf94aj5jfdb1"; depends=[bamsignals ChIPseeker chromhmmData ComplexHeatmap GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; + selectKSigs = derive2 { name="selectKSigs"; version="1.14.0"; sha256="05r2w30ffsgs99bclfzfs4dks7wpfapd806cfm5ls78pqdcw067b"; depends=[gtools HiLDA magrittr Rcpp]; }; + semisup = derive2 { name="semisup"; version="1.26.0"; sha256="0xk3czwgw71rfaxix2mqcszcn1vzcdkakmcpfdgzz1zyhpms5c59"; depends=[VGAM]; }; + seq_hotSPOT = derive2 { name="seq.hotSPOT"; version="1.2.0"; sha256="0rv1sx7q7ycxxmfiwhl98sdd2qjqgswl7nkbqbnj35610xhx3n62"; depends=[hash R_utils]; }; + seq2pathway = derive2 { name="seq2pathway"; version="1.34.0"; sha256="1d3sshrxdk0mx2hmkjf1lc3mr9d6drhr6q8pm531rrm0rdckizrx"; depends=[biomaRt GenomicRanges GSA nnet seq2pathway_data WGCNA]; }; + seqArchR = derive2 { name="seqArchR"; version="1.6.0"; sha256="1xnzh4s9zn31i913hqy7aaw1x6q1hmzsr7lil8nfmysmgl1vpahf"; depends=[BiocParallel Biostrings cli cluster cvTools fpc ggplot2 MASS Matrix matrixStats prettyunits reshape2 reticulate]; }; + seqArchRplus = derive2 { name="seqArchRplus"; version="1.2.0"; sha256="0j0f6g77asz2kb49ram3vgsrglqln24pmywcdfqdlaahsy0jihdg"; depends=[BiocParallel Biostrings BSgenome ChIPseeker cli clusterProfiler cowplot factoextra GenomeInfoDb GenomicRanges ggimage ggplot2 gridExtra heatmaps IRanges magick RColorBrewer S4Vectors scales seqArchR seqPattern]; }; + seqCAT = derive2 { name="seqCAT"; version="1.24.0"; sha256="1jkqbx7yn0siywbll8arh0iqar6zywj430s7ba6pgwbxjpfbxq48"; depends=[dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges rlang rtracklayer S4Vectors scales SummarizedExperiment tidyr VariantAnnotation]; }; + seqCNA = derive2 { name="seqCNA"; version="1.48.0"; sha256="0qqkpgpjj2rywr1y1qj3ffjlxak7fg15jkznz62r7k6r794z45ma"; depends=[adehabitatLT doSNOW GLAD seqCNA_annot]; }; + seqLogo = derive2 { name="seqLogo"; version="1.68.0"; sha256="106359wn4v0m53b33x4zjsyjsj4j8h7bnvd1whamsig982h6szp2"; depends=[]; }; + seqPattern = derive2 { name="seqPattern"; version="1.34.0"; sha256="0rs9dy540d4agp7fc8glbrcnly4s6qcxqsq4yv8y555bbdld6dv0"; depends=[Biostrings GenomicRanges IRanges KernSmooth plotrix]; }; + seqTools = derive2 { name="seqTools"; version="1.36.0"; sha256="110mka5zbvry1d0dz1lmw0kn85xm3k4k8lrdj6qdh5ckk82k342m"; depends=[zlibbioc]; }; + seqbias = derive2 { name="seqbias"; version="1.50.0"; sha256="18pdpi855y1hhka96xc5886nqffjn1jhz9jr9p305iikdrsvmjp1"; depends=[Biostrings GenomicRanges Rhtslib zlibbioc]; }; + seqcombo = derive2 { name="seqcombo"; version="1.24.0"; sha256="1xvvfqhip0zvk2dz2r473qlz4r9adm2pylcbgl6xw0r6yhw06y4a"; depends=[ggplot2 igraph yulab_utils]; }; + seqsetvis = derive2 { name="seqsetvis"; version="1.22.0"; sha256="1v0xlk4fx4y28r2lc81k2362algbgy519nd5rg1y1isf197klfx3"; depends=[cowplot data_table eulerr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 ggplotify IRanges limma pbapply pbmcapply png RColorBrewer Rsamtools rtracklayer S4Vectors scales UpSetR]; }; + sesame = derive2 { name="sesame"; version="1.20.0"; sha256="0yh4mrsj3pqhjkrq5dwmcpcqwixs0pmjy7dfa3cr0mf52fgzcvmr"; depends=[BiocFileCache BiocParallel dplyr GenomeInfoDb GenomicRanges ggplot2 illuminaio IRanges MASS preprocessCore readr reshape2 S4Vectors sesameData stringr SummarizedExperiment tibble wheatmap]; }; + sevenC = derive2 { name="sevenC"; version="1.22.0"; sha256="1k9ss678q0i5hky15d0d577pk5irbnfn7w4s2gbpr10kbacq7n42"; depends=[BiocGenerics boot data_table GenomeInfoDb GenomicRanges InteractionSet IRanges purrr readr rtracklayer S4Vectors]; }; + sevenbridges = derive2 { name="sevenbridges"; version="1.32.0"; sha256="048jsr7a64jijspxsxa3k1wja8h4kdmmdy3g70i88gi804k789rb"; depends=[curl data_table docopt httr jsonlite objectProperties S4Vectors stringr uuid yaml]; }; + shinyMethyl = derive2 { name="shinyMethyl"; version="1.38.0"; sha256="1gkj15q1rxvsdzbsp3gkk02kvvx0kq4wsqycf3ln1bszb9688jw6"; depends=[Biobase BiocGenerics htmltools MatrixGenerics minfi RColorBrewer shiny]; }; + shinyepico = derive2 { name="shinyepico"; version="1.10.0"; sha256="16lfc6vgk03qhiqq94f0w943b5k3nr803rcd6kywr4ldpi4ns4q9"; depends=[data_table doParallel dplyr DT foreach GenomicRanges ggplot2 gplots heatmaply limma minfi plotly reshape2 rlang rmarkdown rtracklayer shiny shinycssloaders shinyjs shinythemes shinyWidgets statmod tidyr zip]; }; + sigFeature = derive2 { name="sigFeature"; version="1.20.0"; sha256="12pxbq0dn6z3avsq468ixkn09iaark95s2l0gmjh3jcmd1dp03zz"; depends=[BiocParallel biocViews e1071 Matrix nlme openxlsx pheatmap RColorBrewer SparseM SummarizedExperiment]; }; + siggenes = derive2 { name="siggenes"; version="1.76.0"; sha256="0jzxwg28ih1i0f7hal99g60zply0g613b4wrjsbv738cmlsai2kc"; depends=[Biobase multtest scrime]; }; + sights = derive2 { name="sights"; version="1.28.0"; sha256="1i5qxhcrvgha5rwhvg2anm4q3rzpgyw95q3qmgfhfgbdjmwwm5qr"; depends=[ggplot2 lattice MASS qvalue reshape2]; }; + signatureSearch = derive2 { name="signatureSearch"; version="1.16.0"; sha256="19hgqq49y6kg9zjjmx6apjqr3mj6f8cbf7xd78gaigyd62w060rj"; depends=[AnnotationDbi BiocGenerics BiocParallel clusterProfiler data_table DelayedArray DOSE dplyr ExperimentHub fastmatch fgsea ggplot2 GSEABase HDF5Array magrittr Matrix org_Hs_eg_db qvalue Rcpp reactome_db readr reshape2 rhdf5 RSQLite scales SummarizedExperiment tibble visNetwork]; }; + signeR = derive2 { name="signeR"; version="2.4.0"; sha256="1890svrwn8n4ysrj5mivh8xyyfgjxyka3jmf6fml297a2lj49gkg"; depends=[ada BiocFileCache BiocGenerics Biostrings BSgenome bsplus class clue cowplot dplyr DT e1071 future future_apply GenomeInfoDb GenomicRanges ggplot2 ggpubr glmnet IRanges kknn listenv magrittr MASS maxstat nloptr NMF pheatmap PMCMRplus ppclust pROC proxy pvclust randomForest RColorBrewer Rcpp RcppArmadillo readr reshape2 rtracklayer scales shiny shinycssloaders shinydashboard shinyWidgets survival survivalAnalysis survminer tibble tidyr VariantAnnotation VGAM]; }; + signifinder = derive2 { name="signifinder"; version="1.4.0"; sha256="1yk44if93615vzh31r22xb3l6dgyirlw9v6zachd1d6i9zh2l2rk"; depends=[AnnotationDbi BiocGenerics ComplexHeatmap consensusOV cowplot DGEobj_utils dplyr ensembldb ggplot2 ggridges GSVA IRanges magrittr matrixStats maxstat openair org_Hs_eg_db patchwork RColorBrewer SpatialExperiment SummarizedExperiment survival survminer TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene viridis]; }; + sigsquared = derive2 { name="sigsquared"; version="1.34.0"; sha256="1jsagrphgxlgznzf9cin6nfm6r22pvblb308ls34fps4vf4cnn1v"; depends=[Biobase survival]; }; + similaRpeak = derive2 { name="similaRpeak"; version="1.34.0"; sha256="1w9nrc07v8vn256d9g2ybgr4k3vw86qvp77z7k7n16fdspq1iq2j"; depends=[R6]; }; + simona = derive2 { name="simona"; version="1.0.6"; sha256="17062syjnq92shijga2j5hbsnr4k9xpr5b7hjhfgw0knigi8r0bw"; depends=[circlize ComplexHeatmap GetoptLong GlobalOptions igraph matrixStats Polychrome Rcpp S4Vectors shiny xml2]; }; + simpleSeg = derive2 { name="simpleSeg"; version="1.4.1"; sha256="1x1r76gv57g2bjcla5s47isr47nzvwcr6zkid1pjpvifnq9il74c"; depends=[BiocParallel cytomapper EBImage S4Vectors spatstat_geom SummarizedExperiment terra]; }; + simplifyEnrichment = derive2 { name="simplifyEnrichment"; version="1.12.0"; sha256="0qhrlhf881mi2v0n0y410c0bf2cm3imrlglq8argnw86n9xj51pw"; depends=[AnnotationDbi BiocGenerics circlize clue cluster colorspace ComplexHeatmap digest GetoptLong GlobalOptions GO_db GOSemSim Matrix org_Hs_eg_db proxyC slam tm]; }; + sincell = derive2 { name="sincell"; version="1.34.0"; sha256="0am0scxjs93z1awrv4ydj11c21c69zq0mf41mimjdpcpizfhy326"; depends=[cluster entropy fastICA fields ggplot2 igraph MASS proxy Rcpp reshape2 Rtsne scatterplot3d statmod TSP]; }; + single = derive2 { name="single"; version="1.6.0"; sha256="06q54dnlfw1n2sw2drybj3z2qf7i3fr6kdcn9gikag5m798d7ggs"; depends=[BiocGenerics Biostrings dplyr GenomicAlignments IRanges reshape2 rlang Rsamtools stringr tidyr]; }; + singleCellTK = derive2 { name="singleCellTK"; version="2.12.0"; sha256="0c7xl2abj9x1ircgbrk8m3xfbmglv4r6y6v8pxvdka0p2nngs950"; depends=[anndata AnnotationHub ape batchelor Biobase BiocParallel celda celldex circlize cluster colorspace colourpicker ComplexHeatmap cowplot data_table DelayedArray DelayedMatrixStats DESeq2 dplyr DropletUtils DT eds enrichR ensembldb ExperimentHub fields ggplot2 ggplotify ggrepel ggtree gridExtra GSEABase GSVA GSVAdata igraph KernSmooth limma magrittr MAST Matrix matrixStats metap msigdbr multtest plotly plyr R_utils reshape2 reticulate rlang rmarkdown ROCR Rtsne S4Vectors scater scDblFinder scds scMerge scran scRNAseq scuttle Seurat shiny shinyalert shinycssloaders shinyjs SingleCellExperiment SingleR SoupX SummarizedExperiment sva TENxPBMCData tibble TrajectoryUtils TSCAN tximport VAM withr yaml zellkonverter zinbwave]; }; + singscore = derive2 { name="singscore"; version="1.22.0"; sha256="0hafzbhbik1512pisjvnnzmy8pl2shrgra6l06kpvsrczkqlmi04"; depends=[Biobase BiocParallel edgeR ggplot2 ggrepel GSEABase magrittr matrixStats plotly plyr RColorBrewer reshape reshape2 S4Vectors SummarizedExperiment tidyr]; }; + sitadela = derive2 { name="sitadela"; version="1.10.0"; sha256="0rfp13qciw5nygq89zxf8jifvd1xws28c9x6pgplgbgr9mas5i2f"; depends=[Biobase BiocGenerics biomaRt Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rsamtools RSQLite rtracklayer S4Vectors]; }; + sitePath = derive2 { name="sitePath"; version="1.18.0"; sha256="17dqfv9p6yskln4ir7g4li3imzvn7sk5a36v8x2fgkq5w7cx2dh4"; depends=[ape aplot ggplot2 ggrepel ggtree gridExtra RColorBrewer Rcpp seqinr tidytree]; }; + sizepower = derive2 { name="sizepower"; version="1.72.0"; sha256="03w4jxck4gxrsi365mnanq7h7hic7vdv1db4i0qy2ryfgcc82dgx"; depends=[]; }; + skewr = derive2 { name="skewr"; version="1.34.0"; sha256="0d381gg30vn8nad0y6h5rvrmilpr9k2aasnqqmalvh228pyysd7j"; depends=[IlluminaHumanMethylation450kmanifest methylumi minfi mixsmsn RColorBrewer S4Vectors wateRmelon]; }; + slalom = derive2 { name="slalom"; version="1.24.0"; sha256="0d5x54057z7hbdv340j114p9j8wfjd3qrr4xr22774yir0k4n0g1"; depends=[BH ggplot2 GSEABase Rcpp RcppArmadillo rsvd SingleCellExperiment SummarizedExperiment]; }; + slingshot = derive2 { name="slingshot"; version="2.10.0"; sha256="0q3j0jpc4mnmjb3xha5cmfhk1qdr1jiz7kdghznk4zqxn4bchc1d"; depends=[igraph matrixStats princurve S4Vectors SingleCellExperiment SummarizedExperiment TrajectoryUtils]; }; + snapCGH = derive2 { name="snapCGH"; version="1.72.0"; sha256="0knjspxzc3z5dhx0a6kx9rkic85w65l84vy552x5bv8jzxkcwrsj"; depends=[aCGH cluster DNAcopy GLAD limma tilingArray]; }; + snapcount = derive2 { name="snapcount"; version="1.14.0"; sha256="0yi2crj3yp23wdrxc4gv8k0fika0y2h0n968w26d243jc1yj1y8c"; depends=[assertthat data_table GenomicRanges httr IRanges jsonlite magrittr Matrix purrr R6 rlang stringr SummarizedExperiment]; }; + snifter = derive2 { name="snifter"; version="1.12.0"; sha256="1y6j4m06c7b2fkwmqzjgn08vr48sqqfnrglikl5ric8w7avww192"; depends=[assertthat basilisk irlba reticulate]; }; + snm = derive2 { name="snm"; version="1.50.0"; sha256="1vgm1pm2yjh1v2bj3ibw9bgsqin4m7x0vj032l6rn2yyiwc8qask"; depends=[corpcor lme4]; }; + snpStats = derive2 { name="snpStats"; version="1.52.0"; sha256="0a4kyv93ljv7n62ghx66l81q6sw24llr0998nsalidyws1wldbyr"; depends=[BiocGenerics Matrix survival zlibbioc]; }; + soGGi = derive2 { name="soGGi"; version="1.34.0"; sha256="0rg1dy94d5vskzf0s6z0iwzl59ag4sa7iwxxr9v5rd25hwaqn552"; depends=[BiocGenerics BiocParallel Biostrings chipseq GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges preprocessCore reshape2 Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; + spaSim = derive2 { name="spaSim"; version="1.4.0"; sha256="0f26rqm8b6qdcbzxk3wwnnc3gy7w69hp91b5gxjsy9dfdx19dzbk"; depends=[dplyr ggplot2 RANN SpatialExperiment spatstat_geom spatstat_random SummarizedExperiment]; }; + sparrow = derive2 { name="sparrow"; version="1.8.0"; sha256="0vqn6ag78zld3v1n5ac9vch8ja6k7dnv90ba3l4m51bw1gcdw3ba"; depends=[babelgene BiocGenerics BiocParallel BiocSet checkmate circlize ComplexHeatmap data_table DelayedMatrixStats edgeR ggplot2 GSEABase irlba limma Matrix plotly viridis]; }; + sparseMatrixStats = derive2 { name="sparseMatrixStats"; version="1.14.0"; sha256="0r2jxwha2xjp8iy7al85s5vib4xvl47gmlbbvvjj4wnz2gfzic9r"; depends=[Matrix MatrixGenerics matrixStats Rcpp]; }; + sparsenetgls = derive2 { name="sparsenetgls"; version="1.20.0"; sha256="1wlhc09divvwg0l75mrhridypkrhn4dmvrak6lhqd0y42byz5w5m"; depends=[glmnet huge MASS Matrix]; }; + spatialDE = derive2 { name="spatialDE"; version="1.8.0"; sha256="0n42zvmn254523gn5138hrvv6wmjkpzz3m7x62jci1hpbhqvb914"; depends=[basilisk checkmate ggplot2 ggrepel gridExtra Matrix reticulate scales SpatialExperiment SummarizedExperiment]; }; + spatialHeatmap = derive2 { name="spatialHeatmap"; version="2.8.3"; sha256="01g7irac1knmvkg1kwf84cq8br785mxlvdy7s9rb8055knhl9vdq"; depends=[data_table dplyr edgeR genefilter ggplot2 ggplotify gplots gridExtra grImport igraph Matrix reshape2 rsvg S4Vectors scater scran scuttle shiny shinydashboard SingleCellExperiment spsComps SummarizedExperiment tibble xml2]; }; + spatzie = derive2 { name="spatzie"; version="1.8.0"; sha256="1nrycrma72znddnw492jrl7fcm4a98hgppwa3gj7pzfrnrg6k1d8"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicFeatures GenomicInteractions GenomicRanges ggplot2 IRanges MatrixGenerics matrixStats motifmatchr S4Vectors SummarizedExperiment TFBSTools]; }; + specL = derive2 { name="specL"; version="1.36.0"; sha256="1yd8yrz588m4y4ifwmn2vw9q2db727lsyypgql0kdbi9bd9nmr5a"; depends=[DBI protViz RSQLite seqinr]; }; + speckle = derive2 { name="speckle"; version="1.2.0"; sha256="1pxpjgsrdn0g6m3xkav3gbnap2nqmp0mnm630psy0hj0f36b9d3s"; depends=[edgeR ggplot2 limma Seurat SingleCellExperiment]; }; + spicyR = derive2 { name="spicyR"; version="1.14.2"; sha256="0qp4j5a1m2s7m5wccd40632z7yjvl3cs995yqrd1dl8bssxaiqr9"; depends=[BiocGenerics BiocParallel ClassifyR concaveman data_table dplyr ggforce ggplot2 IRanges lmerTest mgcv pheatmap rlang S4Vectors scam SingleCellExperiment SpatialExperiment spatstat_explore spatstat_geom SummarizedExperiment tibble tidyr]; }; + spikeLI = derive2 { name="spikeLI"; version="2.62.0"; sha256="0c3m4jmi2bv9cm7nzm8fq7bgwldf3z6fy015sakslndcjwbw8fbn"; depends=[]; }; + spiky = derive2 { name="spiky"; version="1.8.0"; sha256="11ycl4848xgbjrjfj4gzzig6rj88xxqb845bg5f7c0mhha12g3a3"; depends=[bamlss Biostrings BlandAltmanLeh BSgenome GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges Rsamtools S4Vectors scales]; }; + spkTools = derive2 { name="spkTools"; version="1.58.0"; sha256="1cl2ii1bb7j7j3vck0gb8livfrw749kjrj9q9w1117i8pgpl7454"; depends=[Biobase gtools RColorBrewer]; }; + splatter = derive2 { name="splatter"; version="1.26.0"; sha256="1h4c7rcchss01ds1zd2rqkghcpjclziriichrgrkh9rvmsajkpip"; depends=[BiocGenerics BiocParallel checkmate crayon edgeR fitdistrplus locfit matrixStats rlang S4Vectors scuttle SingleCellExperiment SummarizedExperiment withr]; }; + splineTimeR = derive2 { name="splineTimeR"; version="1.30.0"; sha256="1cqlb6ij4qlx5lj10m3z1cb5gbkmszmzz7k1xmnjri7hl72hsf8g"; depends=[Biobase FIs GeneNet GSEABase gtools igraph limma longitudinal]; }; + splots = derive2 { name="splots"; version="1.68.0"; sha256="16751hhy09nbzrhv38jy28q2x68qi3cwh3dacgmf2x7l7zz7dh4n"; depends=[RColorBrewer]; }; + spqn = derive2 { name="spqn"; version="1.14.0"; sha256="07nhy0pjlxnfvdshl9nmh18m83iv3xsi66k6dp6n0hgjdjyfy28b"; depends=[BiocGenerics ggplot2 ggridges matrixStats SummarizedExperiment]; }; + srnadiff = derive2 { name="srnadiff"; version="1.22.0"; sha256="0i7i8v31cpp6jbx62afabn08qg0n2n928812s5hbi3fsg5p9c7q1"; depends=[baySeq BiocManager BiocParallel BiocStyle DESeq2 devtools edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Gviz IRanges Rcpp Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; + ssPATHS = derive2 { name="ssPATHS"; version="1.16.0"; sha256="0ajhmgj9w8ajz2rf6ilwvl61daf0kf1hcibfndrgnkjpnb45yp44"; depends=[dml MESS ROCR SummarizedExperiment]; }; + sscu = derive2 { name="sscu"; version="2.32.0"; sha256="0ialywasrvh2x6pmafjikdsr8q4dj0i4a9yqaw7g4d9ns6mipqd8"; depends=[BiocGenerics Biostrings seqinr]; }; + ssize = derive2 { name="ssize"; version="1.76.0"; sha256="0bn41cjqkd5zmzhbhqnq9xf5bx4gk70ah1bvhldg831268a0ddhw"; depends=[gdata xtable]; }; + ssrch = derive2 { name="ssrch"; version="1.18.0"; sha256="0s23pakhln9ks5w4bv6ydh47ycy78il9nn5384vfws7v5w855mk9"; depends=[DT shiny]; }; + ssviz = derive2 { name="ssviz"; version="1.36.0"; sha256="02xdg6mf94f3dchzapvlck16dkk2xrkbryz28llvjcxxnlbp3kab"; depends=[Biostrings ggplot2 RColorBrewer reshape Rsamtools]; }; + stJoincount = derive2 { name="stJoincount"; version="1.4.0"; sha256="0iy7mqxa8bnai72r10gqsva7x52s847fz4yj9cpivb05mxd0jacz"; depends=[dplyr ggplot2 magrittr pheatmap raster Seurat sp SpatialExperiment spdep SummarizedExperiment]; }; + staRank = derive2 { name="staRank"; version="1.44.0"; sha256="1n8mcldi4ng12anksafblpnmafpz3k41gics2m9lr2qjwpcki78l"; depends=[cellHTS2]; }; + stageR = derive2 { name="stageR"; version="1.24.0"; sha256="064hvx8qyw5hdhihwl9k0jqhg6saz4ng2m37d2ipr5pz9v8adspb"; depends=[SummarizedExperiment]; }; + standR = derive2 { name="standR"; version="1.6.0"; sha256="1mmjxbkgdy8wgfplx0yl5m9jn4srfi1p25wl5vv9jz5r1wz32i0k"; depends=[Biobase BiocGenerics dplyr edgeR ggalluvial ggplot2 limma mclustcomp patchwork readr rlang ruv RUVSeq S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment tibble tidyr]; }; + statTarget = derive2 { name="statTarget"; version="1.32.0"; sha256="182pfd6i46h4rggm4pq0rqjfsf0sxap99mgxvf40wa428w55wawg"; depends=[impute pdist pls plyr randomForest ROC rrcov]; }; + stepNorm = derive2 { name="stepNorm"; version="1.74.0"; sha256="04n69wgwwwkvw87ni1hgvwjq9n0dhaibx4pjyz840vlxqd8bmfla"; depends=[marray MASS]; }; + strandCheckR = derive2 { name="strandCheckR"; version="1.20.0"; sha256="0vwwcywlnq1bi0g3illsk2sgx5ad0xifxxvv87i8ms9x0vlg2px2"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges magrittr reshape2 rmarkdown Rsamtools S4Vectors stringr TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + struct = derive2 { name="struct"; version="1.14.0"; sha256="1jkfif4zbdmxy78f8w87g9yf5n6ijgsrpwvriby3a6kif53r6z29"; depends=[knitr ontologyIndex rols S4Vectors SummarizedExperiment]; }; + structToolbox = derive2 { name="structToolbox"; version="1.14.0"; sha256="1pwnsvyzpshp7mw56ksh2jiwbdh8znb2k375sr1r17gyi0kk3qdr"; depends=[ggplot2 ggthemes gridExtra scales sp struct]; }; + subSeq = derive2 { name="subSeq"; version="1.32.0"; sha256="0y08rxaw79aybvmqszjzb6vrnipbhsc8b1hw7ggxmhkm2d9z1h02"; depends=[Biobase data_table digest dplyr ggplot2 magrittr qvalue tidyr]; }; + supersigs = derive2 { name="supersigs"; version="1.10.0"; sha256="1lx927w6s4f098y0dh69kc2xswfigj89apv4nqi27frqq4my0051"; depends=[assertthat Biostrings caret dplyr rlang rsample SummarizedExperiment tidyr]; }; + supraHex = derive2 { name="supraHex"; version="1.40.0"; sha256="0v7b4hwj8b7byzshqd7drppnk02hv5p6ar3lb9biw8z5d20k4gx4"; depends=[ape dplyr hexbin igraph magrittr MASS purrr readr stringr tibble tidyr]; }; + surfaltr = derive2 { name="surfaltr"; version="1.8.0"; sha256="1k4s8v8fk1abcx672ypx2rjkim7vb8z5p39kp3czxiyzlsz2684s"; depends=[biomaRt Biostrings dplyr ggplot2 httr msa protr readr seqinr stringr testthat xml2]; }; + survcomp = derive2 { name="survcomp"; version="1.52.0"; sha256="18a81vv88xj3frkdy5l6w2fc4xzr1k6vgbz4j4marlmh6mz6skin"; depends=[bootstrap ipred KernSmooth prodlim rmeta SuppDists survival survivalROC]; }; + survtype = derive2 { name="survtype"; version="1.18.0"; sha256="0b441y5s2lflv6n9rz10d6fva49pprnj65dw11d2yv2rqdsv30i6"; depends=[clustvarsel pheatmap SummarizedExperiment survival survminer]; }; + sva = derive2 { name="sva"; version="3.50.0"; sha256="0p4zgw1pi5vnaqxn6jmvhpy0h5hnnqp41n0k2v0chhqgqxgn67x1"; depends=[BiocParallel edgeR genefilter limma matrixStats mgcv]; }; + svaNUMT = derive2 { name="svaNUMT"; version="1.8.0"; sha256="0v8bzzkk2h017zq5riy399d2c28b8g3nq10y5av3594il2if4i1x"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges rlang rtracklayer S4Vectors stringr StructuralVariantAnnotation VariantAnnotation]; }; + svaRetro = derive2 { name="svaRetro"; version="1.8.0"; sha256="1mlji4dqr9m99wfqcm0xh4q42bw7d4lvmyr7irr6qh4z0kx3kyb5"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges rlang rtracklayer S4Vectors stringr StructuralVariantAnnotation VariantAnnotation]; }; + swfdr = derive2 { name="swfdr"; version="1.28.0"; sha256="0xnfl0v6ijzb93yvdba7kpab5igbdxy6whn3lyjil24fmdr6xdg3"; depends=[]; }; + switchBox = derive2 { name="switchBox"; version="1.38.0"; sha256="0dvfrcbim09ahqh2wx455745h6pway72m1yy8wkg07zp6cdr0xm5"; depends=[gplots pROC]; }; + switchde = derive2 { name="switchde"; version="1.28.0"; sha256="0w2k4jx7svc1pz7nrb7kqbm1hbl6ka75y82dljzc7aifdm5y5zvj"; depends=[dplyr ggplot2 SingleCellExperiment SummarizedExperiment]; }; + synapsis = derive2 { name="synapsis"; version="1.8.0"; sha256="1l62y9rkx5yqyjb2bqsymmkyl8wjacfbivz2h91c789rywkah5d8"; depends=[EBImage]; }; + synapter = derive2 { name="synapter"; version="2.26.0"; sha256="0ccz6yasni13yi5qa8whm026v9q7za3714znnnyc3x4xr2sizk83"; depends=[Biobase Biostrings cleaver lattice MSnbase multtest qvalue RColorBrewer readr rmarkdown]; }; + synergyfinder = derive2 { name="synergyfinder"; version="3.10.0"; sha256="0v8xpgq6caqf9im87am6nrifzgr4x6amjlpz29lsczk79084lifc"; depends=[dplyr drc furrr future ggforce ggplot2 ggrepel gstat kriging lattice magrittr metR mice nleqslv pbapply plotly purrr reshape2 sp SpatialExtremes stringr tidyr tidyverse vegan]; }; + synlet = derive2 { name="synlet"; version="2.2.0"; sha256="0khbs23xyl02skld6di6s31ppqxnwlid134x1fm8pc932qmd49rf"; depends=[data_table ggplot2 magrittr patchwork RankProd RColorBrewer]; }; + syntenet = derive2 { name="syntenet"; version="1.4.0"; sha256="171g7c6y523rycykpzlj8qhyz1jyh646lqvhxa760qr14zj5cf82"; depends=[BiocParallel Biostrings GenomicRanges ggnetwork ggplot2 igraph intergraph networkD3 pheatmap RColorBrewer Rcpp rlang rtracklayer testthat]; }; + systemPipeR = derive2 { name="systemPipeR"; version="2.8.0"; sha256="01amqib9ahrf19xpy4ivlsss82zyp3w7fbgwrwp53zfbg0cninga"; depends=[BiocGenerics Biostrings crayon GenomicRanges ggplot2 htmlwidgets magrittr Rsamtools S4Vectors ShortRead stringr SummarizedExperiment yaml]; }; + systemPipeShiny = derive2 { name="systemPipeShiny"; version="1.12.0"; sha256="0r5fk657q3zgmjx8kdblypfwqmsdbgbn919zi74dkkgma9ls2c7c"; depends=[assertthat bsplus crayon dplyr drawer DT ggplot2 glue htmltools magrittr openssl plotly R6 rlang RSQLite rstudioapi shiny shinyAce shinydashboard shinydashboardPlus shinyFiles shinyjqui shinyjs shinytoastr shinyWidgets spsComps spsUtil stringr styler tibble vroom yaml]; }; + systemPipeTools = derive2 { name="systemPipeTools"; version="1.10.0"; sha256="1fs5s5mqmsb7pra2znbkhp4jfkcds1zzipfi39fl4dsh24iinwrd"; depends=[ape DESeq2 dplyr DT GGally ggplot2 ggrepel ggtree glmpca magrittr pheatmap plotly Rtsne SummarizedExperiment tibble]; }; + tLOH = derive2 { name="tLOH"; version="1.10.0"; sha256="0yzbpy30hvpxdh1lsnab5jp2nj64ii4pmir8xq3bp871hpqiwmwd"; depends=[bestNormalize data_table depmixS4 dplyr GenomicRanges ggplot2 MatrixGenerics naniar purrr scales stringr VariantAnnotation]; }; + tRNA = derive2 { name="tRNA"; version="1.20.0"; sha256="1s52g9sh3fv9f1bscipmdh7gqr94acn09q8v4a3drpg1dvfnc109"; depends=[BiocGenerics Biostrings GenomicRanges ggplot2 IRanges Modstrings S4Vectors scales stringr Structstrings XVector]; }; + tRNAdbImport = derive2 { name="tRNAdbImport"; version="1.20.0"; sha256="059nmal5h9xknxs79lnfji9d31b2f1vhk0fvf9cnlll12ma4nv2w"; depends=[BiocGenerics Biostrings GenomicRanges httr IRanges Modstrings S4Vectors stringr Structstrings tRNA xml2]; }; + tRNAscanImport = derive2 { name="tRNAscanImport"; version="1.22.0"; sha256="18yp63mrgz497qcvf0cjgj22b75xmfb2f61jw2cd312c344iikzn"; depends=[BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Rsamtools rtracklayer S4Vectors stringr Structstrings tRNA XVector]; }; + tRanslatome = derive2 { name="tRanslatome"; version="1.40.0"; sha256="08fdamgafp2cjp6sp6lpknyfl243sp32xqmgbazm0x3qxf4fr9k0"; depends=[anota Biobase DESeq2 edgeR GOSemSim gplots Heatplus limma org_Hs_eg_db plotrix RankProd topGO]; }; + tadar = derive2 { name="tadar"; version="1.0.0"; sha256="1v39gw3i202lzq7cjvm5rb043b3zyyrz48ikm6dawv6vv1p2kjp5"; depends=[BiocGenerics GenomeInfoDb GenomicRanges ggplot2 Gviz IRanges MatrixGenerics rlang Rsamtools S4Vectors VariantAnnotation]; }; + tanggle = derive2 { name="tanggle"; version="1.8.0"; sha256="0gf5y5nwhmpxzl8yynp4352i969wgllj2xb9khc401qciznfmh0h"; depends=[ape ggplot2 ggtree phangorn]; }; + target = derive2 { name="target"; version="1.16.0"; sha256="0jqa7wdxqyppindfzx0s9zybmmcbxgy5s7wf36hx87vy8ja5h4zf"; depends=[BiocGenerics GenomicRanges IRanges matrixStats shiny]; }; + tenXplore = derive2 { name="tenXplore"; version="1.24.0"; sha256="1sk8xxvrmxkqlz7hq6w10hsjf1x8g06gbaas75hx4m0f1hz6pdwm"; depends=[AnnotationDbi matrixStats ontoProc org_Mm_eg_db restfulSE shiny SummarizedExperiment]; }; + ternarynet = derive2 { name="ternarynet"; version="1.46.0"; sha256="1y3fwxqniy1w61hjq20rmms1pl4341nh3lv8vr9g8y63lcf2nn0q"; depends=[BiocParallel igraph]; }; + terraTCGAdata = derive2 { name="terraTCGAdata"; version="1.6.0"; sha256="0capn1a7cdmrr9mbfhglxyr8jn8m5ai07bgsmi54hz01vkspba8f"; depends=[AnVIL BiocFileCache dplyr GenomicRanges MultiAssayExperiment RaggedExperiment readr S4Vectors TCGAutils tidyr]; }; + tidySingleCellExperiment = derive2 { name="tidySingleCellExperiment"; version="1.12.0"; sha256="08vz3198cl0d8wh5hz4vkf47jsyvwczmnw5g8zawpkylmawr0xrp"; depends=[cli dplyr ellipsis fansi ggplot2 lifecycle magrittr Matrix pillar pkgconfig plotly purrr rlang S4Vectors SingleCellExperiment stringr SummarizedExperiment tibble tidyr tidyselect ttservice vctrs]; }; + tidySummarizedExperiment = derive2 { name="tidySummarizedExperiment"; version="1.12.0"; sha256="0vrs235vggsvmjmyys8h2n3714q0hnzi3qzp3rcnk3pfsj3mhi4f"; depends=[cli dplyr ellipsis fansi ggplot2 lifecycle magrittr pillar pkgconfig plotly purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr tidyselect ttservice vctrs]; }; + tidybulk = derive2 { name="tidybulk"; version="1.14.3"; sha256="0dpcx6vx70iwrxvy5bcggqvnswsmc96b9n0da715wcinibw7i4yj"; depends=[crayon dplyr GenomicRanges lifecycle magrittr Matrix preprocessCore purrr readr rlang S4Vectors scales stringi stringr SummarizedExperiment tibble tidyr tidyselect ttservice]; }; + tigre = derive2 { name="tigre"; version="1.56.0"; sha256="1wn6fpkqzy29n1ghpk59cd63wdrz3imxmnkrmdv1j1hw7iljq8ax"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI gplots RSQLite]; }; + tilingArray = derive2 { name="tilingArray"; version="1.80.0"; sha256="01j4wj0mdfrlyhp2alf1xfy78f17x43w9i0wb41ljw6pm313np58"; depends=[affy Biobase genefilter pixmap RColorBrewer strucchange vsn]; }; + timeOmics = derive2 { name="timeOmics"; version="1.14.0"; sha256="11x8m0vr6sbnpxnxn352cjkidxxv1pq7d8zdp59gcydrqdgsq665"; depends=[dplyr ggplot2 ggrepel lmtest magrittr mixOmics plyr purrr stringr tibble tidyr]; }; + timecourse = derive2 { name="timecourse"; version="1.74.0"; sha256="0lfsw6migjxswxiv05ry6dr2by9i6z285y16h2r1dm2qc287vxbi"; depends=[Biobase limma marray MASS]; }; + timescape = derive2 { name="timescape"; version="1.26.0"; sha256="1yb3nbx0d206gwkrifqhxdnij6qxlgj5dmk1f2zgqlqkp2fhw45y"; depends=[dplyr gtools htmlwidgets jsonlite stringr]; }; + tkWidgets = derive2 { name="tkWidgets"; version="1.80.0"; sha256="11a8rflmga2d63l5nzdlbkyfnzsf20dzg2sy6qr143hg9sjzqrrj"; depends=[DynDoc widgetTools]; }; + tomoda = derive2 { name="tomoda"; version="1.12.0"; sha256="0lmibcsqasga6j6dwrq415yvrx1jqg88ayvrr4bca4pdshkkds6s"; depends=[ggplot2 ggrepel RColorBrewer reshape2 Rtsne SummarizedExperiment umap]; }; + tomoseqr = derive2 { name="tomoseqr"; version="1.6.0"; sha256="07ywzz2bkm408kv1c9hwfaww7vr63090jbcbi8x6k4z3c4jllmvw"; depends=[animation BiocFileCache dplyr ggplot2 plotly purrr readr shiny stringr tibble]; }; + topGO = derive2 { name="topGO"; version="2.54.0"; sha256="1sznyx11kzw8d8zg5ynl9sp6m0daf2yw3f2b24maxbpr1xkif9nx"; depends=[AnnotationDbi Biobase BiocGenerics DBI GO_db graph lattice matrixStats SparseM]; }; + topconfects = derive2 { name="topconfects"; version="1.18.0"; sha256="03fr9ghdmaqsriwrim6fbvq09dknsrq3dbfswqrwkfi785ddmmfk"; depends=[assertthat ggplot2]; }; + topdownr = derive2 { name="topdownr"; version="1.24.0"; sha256="01m9j4bbii35r8kzf4zi3xcma5g1cv87gcmmpc7cl2hp38gwpa4y"; depends=[Biobase BiocGenerics Biostrings ggplot2 Matrix MSnbase mzR ProtGenerics S4Vectors]; }; + trackViewer = derive2 { name="trackViewer"; version="1.38.1"; sha256="008d1wg8882iq7jfmwijpchxrfva5ysl45ama62iy8s9dm0fpwsj"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph grImport Gviz htmlwidgets InteractionSet IRanges plotrix Rgraphviz rhdf5 Rsamtools rtracklayer S4Vectors scales strawr]; }; + tracktables = derive2 { name="tracktables"; version="1.36.0"; sha256="0ia4jqdapllgf51i4gjyjkmk6i6yrqx8np28hj1k0lr07j3k1hq4"; depends=[GenomicRanges IRanges RColorBrewer Rsamtools stringr tractor_base XML XVector]; }; + tradeSeq = derive2 { name="tradeSeq"; version="1.16.0"; sha256="06k0jib20nq7zqc5vbgag8v1lbadjlg0idh5jwn5bcjc74dx15vj"; depends=[Biobase BiocParallel edgeR ggplot2 igraph magrittr MASS Matrix matrixStats mgcv pbapply princurve RColorBrewer S4Vectors SingleCellExperiment slingshot SummarizedExperiment tibble TrajectoryUtils viridis]; }; + transcriptR = derive2 { name="transcriptR"; version="1.30.0"; sha256="1lbla2syljpmgdf7da7vl1260fy54xs3hk6m2gjpark0dka0kqbh"; depends=[BiocGenerics caret chipseq e1071 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges pROC reshape2 Rsamtools rtracklayer S4Vectors]; }; + transcriptogramer = derive2 { name="transcriptogramer"; version="1.24.0"; sha256="17jy1cxn1i2grbrd9l95y9rmm2k67xazgr77i7vyjxwc3dki61sl"; depends=[biomaRt data_table doSNOW foreach ggplot2 igraph limma progress RedeR snow tidyr topGO]; }; + transformGamPoi = derive2 { name="transformGamPoi"; version="1.8.0"; sha256="0xa7hysk0ssjxhwhsz97487k3xxnzaz83d7bpq3nb0jvglqzja1x"; depends=[DelayedArray glmGamPoi HDF5Array Matrix MatrixGenerics Rcpp SummarizedExperiment]; }; + transite = derive2 { name="transite"; version="1.20.0"; sha256="0mkrk73ll276rx6ffdd3d4zq9z8n912cm2yk0csb8m9lbzfigpqi"; depends=[BiocGenerics Biostrings dplyr GenomicRanges ggplot2 gridExtra Rcpp scales TFMPvalue]; }; + transomics2cytoscape = derive2 { name="transomics2cytoscape"; version="1.12.0"; sha256="0scib9ai6x7854cnwxn8imiycigsmin9q2hfvy26vdy72svv7q17"; depends=[dplyr KEGGREST pbapply purrr RCy3 tibble]; }; + traseR = derive2 { name="traseR"; version="1.32.0"; sha256="05xi01cgz8vahn37rwx9ngxglxyhdk2ckkbdchd6g1if15pzm91q"; depends=[BSgenome_Hsapiens_UCSC_hg19 GenomicRanges IRanges]; }; + traviz = derive2 { name="traviz"; version="1.8.0"; sha256="0yf0as3400wxgvbw7i5wmj3iqzv7racs6xsaydalgdpax2na70k6"; depends=[Biobase ggplot2 mgcv princurve RColorBrewer rgl SingleCellExperiment slingshot SummarizedExperiment viridis]; }; + treeio = derive2 { name="treeio"; version="1.26.0"; sha256="1kvzdryw74r74gwxddsrng81ww49p3s7hgxn8ggl0p8fvz3sfgir"; depends=[ape dplyr jsonlite magrittr rlang tibble tidytree]; }; + treekoR = derive2 { name="treekoR"; version="1.10.0"; sha256="059ars8rppa2pmykf4d1lhazbb9fdb4xjxrnsyihjfca8cc2i0n8"; depends=[ape data_table diffcyt dplyr edgeR ggiraph ggplot2 ggtree hopach lme4 multcomp patchwork SingleCellExperiment tidyr]; }; + tricycle = derive2 { name="tricycle"; version="1.10.0"; sha256="1dawkp681pz9hf7fp2nag9pcfxx5rq0z4j9czlalf0sylsjbirkd"; depends=[AnnotationDbi circular dplyr GenomicRanges ggnewscale ggplot2 IRanges RColorBrewer S4Vectors scater scattermore SingleCellExperiment SummarizedExperiment]; }; + trigger = derive2 { name="trigger"; version="1.48.0"; sha256="0bwjsp7mksr7xw3dchq6n4d359x3jwb94y97f9cnap4x4v0jrx6i"; depends=[corpcor qtl qvalue sva]; }; + trio = derive2 { name="trio"; version="3.40.0"; sha256="0hh3fk7jsgdi5v9gwc8f3lcp6snc1d9yxalf20zyhcilyn19vdhv"; depends=[LogicReg siggenes survival]; }; + triplex = derive2 { name="triplex"; version="1.42.0"; sha256="1rgws9fw0zhq55qjj1jhiy93anj21xxc45lqkjy2p5m65i3300zh"; depends=[Biostrings GenomicRanges IRanges S4Vectors XVector]; }; + tripr = derive2 { name="tripr"; version="1.8.0"; sha256="08f7xmhwx6s79lw5pb0manj6y5hxr6dvaczvacfmvvwf3l7p09pn"; depends=[config data_table dplyr DT golem gridExtra plot3D plotly plyr RColorBrewer shiny shinyBS shinyFiles shinyjs stringdist stringr]; }; + ttgsea = derive2 { name="ttgsea"; version="1.10.0"; sha256="00yk10hkfajd01s33al0kdc402n35axkywjpcp72zsrhx7j0xviw"; depends=[data_table DiagrammeR keras purrr stopwords text2vec textstem tm tokenizers]; }; + tweeDEseq = derive2 { name="tweeDEseq"; version="1.48.0"; sha256="0mg6kfnvxlpjibm0ghjqycggs6vsr60pg8vwrjvdk14p9c807cdp"; depends=[cqn edgeR limma MASS Rcpp]; }; + twilight = derive2 { name="twilight"; version="1.78.0"; sha256="00ggr8z7swscrlqasny041jxczkwx6qskazwbc50v1f4n0m81hvh"; depends=[Biobase]; }; + twoddpcr = derive2 { name="twoddpcr"; version="1.26.0"; sha256="1yjqmljfc6p11h68z7lmm4b43rwc992n4iyj10vyyjdfqrajll0s"; depends=[class ggplot2 hexbin RColorBrewer S4Vectors scales shiny]; }; + txcutr = derive2 { name="txcutr"; version="1.8.0"; sha256="0xq71y0rds16mkcnf7vdxq4qvx3n4h59237s3j9g6s8sj7iykxgj"; depends=[AnnotationDbi BiocGenerics BiocParallel Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer S4Vectors]; }; + tximeta = derive2 { name="tximeta"; version="1.20.1"; sha256="00wygiv6k75bx5qs27qlq9l6ajv9gl2bbyqi2gv6jaaaj167q4sd"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings ensembldb GenomeInfoDb GenomicFeatures GenomicRanges IRanges jsonlite Matrix S4Vectors SummarizedExperiment tibble tximport]; }; + tximport = derive2 { name="tximport"; version="1.30.0"; sha256="0m6avd815xcv3py5sym083pdccvd4crdyyc7sfpxccnksgchyrf2"; depends=[]; }; + uSORT = derive2 { name="uSORT"; version="1.28.0"; sha256="09dk90lhxyfpv1jz589q5zi84jldpvnibsi0ijnmv3l0998jmfxa"; depends=[Biobase BiocGenerics cluster fpc gplots igraph Matrix monocle plyr RANN RSpectra VGAM]; }; + uncoverappLib = derive2 { name="uncoverappLib"; version="1.12.0"; sha256="02c2fc89l8shbs8b9lqnzn9k413rbcff8lp7in2770ayw8lsnwaf"; depends=[BiocFileCache condformat DT EnsDb_Hsapiens_v75 EnsDb_Hsapiens_v86 GenomicRanges Gviz Homo_sapiens markdown openxlsx org_Hs_eg_db OrganismDbi processx rappdirs rlist Rsamtools S4Vectors shiny shinyBS shinycssloaders shinyjs shinyWidgets stringr TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + unifiedWMWqPCR = derive2 { name="unifiedWMWqPCR"; version="1.38.0"; sha256="0v3jpnm3nq66xvckmc8447xl7wngfhhiwq6vjx54wgc6f586vmgd"; depends=[BiocGenerics HTqPCR]; }; + universalmotif = derive2 { name="universalmotif"; version="1.20.0"; sha256="0wy7zplypjiqv4wjq0l30xb5xj63fxb7z2wmmfrmzfkbgbm0xyha"; depends=[BiocGenerics Biostrings ggplot2 IRanges MASS MatrixGenerics Rcpp RcppThread rlang S4Vectors yaml]; }; + updateObject = derive2 { name="updateObject"; version="1.6.0"; sha256="0a1br8ifjkp3qxirs9skih194q9ghh1g3kifm4imah7nh138dwxa"; depends=[BiocGenerics digest S4Vectors]; }; + variancePartition = derive2 { name="variancePartition"; version="1.32.2"; sha256="0cmcg39a5939y517vhvwanqh1fwzyx6pbq47nc5cpswf7pn9cv5x"; depends=[aod Biobase BiocParallel corpcor fANCOVA ggplot2 gplots iterators limma lme4 lmerTest MASS Matrix matrixStats pbkrtest Rdpack remaCor reshape2 RhpcBLASctl rlang scales]; }; + vbmp = derive2 { name="vbmp"; version="1.70.0"; sha256="1i2fz0mp5pab7pwibmghnl95cha3p29a6pzn3yj5izxv5rc4n5hb"; depends=[]; }; + velociraptor = derive2 { name="velociraptor"; version="1.12.0"; sha256="0z40mgmqcx4rg3s1gi3gnhnlh65l133ikw2nawhyrcjy4d34gpq1"; depends=[basilisk BiocGenerics BiocParallel BiocSingular DelayedArray Matrix reticulate S4Vectors scuttle SingleCellExperiment SummarizedExperiment zellkonverter]; }; + veloviz = derive2 { name="veloviz"; version="1.8.0"; sha256="11wrj0czqcapi38f8sm1f2s1xfnbjqf4js7ridk1j106kzi2cvsz"; depends=[igraph Matrix mgcv Rcpp RSpectra]; }; + vidger = derive2 { name="vidger"; version="1.22.0"; sha256="1ldl67jcgqjkla47f5n405jb0avy1hba6kzx3kj0cfs3fnvcdks6"; depends=[Biobase DESeq2 edgeR GGally ggplot2 ggrepel knitr RColorBrewer rmarkdown scales SummarizedExperiment tidyr]; }; + viper = derive2 { name="viper"; version="1.36.0"; sha256="088jgnsn4bi72zpywzbyz5l5r6xj3kjh2b847lx6v4dc10n0v0sp"; depends=[Biobase e1071 KernSmooth mixtools]; }; + vissE = derive2 { name="vissE"; version="1.10.0"; sha256="1gzhw3w70ri5hg8dy3q5vh4zsladqab1hbrx4zx7kvw80yhqf7h4"; depends=[ggforce ggplot2 ggraph ggrepel ggwordcloud GSEABase igraph msigdb plyr RColorBrewer reshape2 scales scico textstem tidygraph tm]; }; + vsclust = derive2 { name="vsclust"; version="1.4.0"; sha256="13blx78akk55jq6xmg9qqb9qbyrhgnqbn8a762lrhw720wj9jf1l"; depends=[limma matrixStats MultiAssayExperiment qvalue Rcpp shiny]; }; + vsn = derive2 { name="vsn"; version="3.70.0"; sha256="0li0yxf8m34xpmrgv5vciy8zdsbfdlajl9cmnxr4g4nmarik2bkh"; depends=[affy Biobase ggplot2 lattice limma]; }; + vtpnet = derive2 { name="vtpnet"; version="0.42.0"; sha256="0550vqz3bccab16w7p7i1kjvpf3j1nid6qrd4z4hrfy0lgpj09ag"; depends=[doParallel foreach GenomicRanges graph gwascat]; }; + vulcan = derive2 { name="vulcan"; version="1.24.0"; sha256="0zsc9cm6xxprn4mndz0zzn062lww80ym1avjqn89bsghjig15lmz"; depends=[Biobase caTools ChIPpeakAnno csaw DESeq2 DiffBind GenomicRanges gplots locfit S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene viper wordcloud zoo]; }; + waddR = derive2 { name="waddR"; version="1.16.0"; sha256="07a5px5vixni5zcaqyarlhhqyf6md53k6ll4c6qc6lan2gj28pk7"; depends=[arm BiocFileCache BiocParallel eva Rcpp RcppArmadillo SingleCellExperiment]; }; + wateRmelon = derive2 { name="wateRmelon"; version="2.8.0"; sha256="1ra21qzni9cny52ag9zxi46vb9grabyqjyk01dqqp3r9i0b4999l"; depends=[Biobase IlluminaHumanMethylation450kanno_ilmn12_hg19 illuminaio limma lumi matrixStats methylumi ROC]; }; + wavClusteR = derive2 { name="wavClusteR"; version="2.36.0"; sha256="1y2bk1kla0l72xgdam2l9c0k7584ckdqscqnc184cxvqm6fb335j"; depends=[BiocGenerics Biostrings foreach GenomicFeatures GenomicRanges ggplot2 Hmisc IRanges mclust Rsamtools rtracklayer S4Vectors seqinr stringr]; }; + weaver = derive2 { name="weaver"; version="1.68.0"; sha256="1y3zrycmv8yg0k521v1pgwzrlrwhsq7nbsfq5nakmlnrra6m9hpr"; depends=[codetools digest]; }; + webbioc = derive2 { name="webbioc"; version="1.74.0"; sha256="1ca41q7hxy6p8kvc3qbjplvn40k4jwhf0mb03njifry4xi1xipgy"; depends=[affy annaffy Biobase BiocManager gcrma multtest qvalue vsn]; }; + weitrix = derive2 { name="weitrix"; version="1.14.0"; sha256="0rn3dnz8bg9rkc0ksfpn3hw0jhznqhnih91xgxnnka3zq1hs3bxv"; depends=[assertthat BiocGenerics BiocParallel Ckmeans_1d_dp DelayedArray DelayedMatrixStats dplyr ggplot2 glm2 limma purrr reshape2 RhpcBLASctl rlang S4Vectors scales SummarizedExperiment topconfects]; }; + widgetTools = derive2 { name="widgetTools"; version="1.80.0"; sha256="1zkc275sb1qbban7sghqziv3xkg7wjdpghddklv451n7j282k6w1"; depends=[]; }; + wiggleplotr = derive2 { name="wiggleplotr"; version="1.26.0"; sha256="1gq0hxmnnis0g1y6hiphz02dmk3pfjz874xb2bxqw49z7387fwm8"; depends=[assertthat cowplot dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges purrr rtracklayer S4Vectors]; }; + wpm = derive2 { name="wpm"; version="1.12.0"; sha256="0g9cvxqyvmhd55s58n1940vsx8klkkmphakqz1apylkrlzylgzya"; depends=[Biobase cli config dplyr DT ggplot2 golem logging RColorBrewer rlang shiny shinycustomloader shinydashboard shinyWidgets stringr SummarizedExperiment]; }; + wppi = derive2 { name="wppi"; version="1.10.0"; sha256="04wg645c0gww8mq3vg70gqlwm12dmqxmvk704zvmxcpifhrvpn2b"; depends=[dplyr igraph logger magrittr Matrix OmnipathR progress purrr RCurl rlang tibble tidyr]; }; + xcms = derive2 { name="xcms"; version="4.0.1"; sha256="061ihzj8pn2g393q1gdq2jssanxm9gh5qm37fz4gna2hbd6bf79p"; depends=[Biobase BiocGenerics BiocParallel IRanges lattice MassSpecWavelet MsCoreUtils MsExperiment MsFeatures MSnbase multtest mzR plyr progress ProtGenerics RANN RColorBrewer robustbase S4Vectors Spectra SummarizedExperiment]; }; + xcore = derive2 { name="xcore"; version="1.6.0"; sha256="0m176rbszbpi2900cf1p574hvi5qmvw9faf08g15wijk9r896qx7"; depends=[DelayedArray edgeR foreach GenomicRanges glmnet IRanges iterators magrittr Matrix MultiAssayExperiment S4Vectors]; }; + xmapbridge = derive2 { name="xmapbridge"; version="1.60.0"; sha256="0pby2h8m12xlngpk33dvh3nkrpgqi4f2mb7g9jafyiv3sl8pjd19"; depends=[]; }; + yamss = derive2 { name="yamss"; version="1.28.0"; sha256="16rdy35wmydcx322pf9j7l7z2mzgrksg1whr8i8xdmdqfnqz3xyb"; depends=[BiocGenerics data_table EBImage IRanges limma Matrix mzR S4Vectors SummarizedExperiment]; }; + yarn = derive2 { name="yarn"; version="1.28.0"; sha256="12d806pyiks5xbvxng4pxn0xqvgs4c526gp2pp2qhdxw0w2m29rj"; depends=[Biobase biomaRt downloader edgeR gplots limma matrixStats preprocessCore quantro RColorBrewer readr]; }; + zFPKM = derive2 { name="zFPKM"; version="1.24.0"; sha256="18pnzc51r7l1ypnhavl83r3gy7l91qnqzvl6771zid04g99pk844"; depends=[checkmate dplyr ggplot2 SummarizedExperiment tidyr]; }; + zellkonverter = derive2 { name="zellkonverter"; version="1.12.1"; sha256="029bqn25c90algvgacxbv0fdznpg879xjwfj5hiydfwq30y0kr8r"; depends=[basilisk cli DelayedArray Matrix reticulate S4Vectors SingleCellExperiment SummarizedExperiment]; }; + zenith = derive2 { name="zenith"; version="1.4.2"; sha256="0wy3v69pp8jhij1svncq86x35xxr2d0gl5mrk7h8w4341sbms4p4"; depends=[EnrichmentBrowser ggplot2 GSEABase limma msigdbr progress Rdpack reshape2 Rfast tidyr variancePartition]; }; + zinbwave = derive2 { name="zinbwave"; version="1.24.0"; sha256="1lp8x9grc07kaz9iy7yc45mk708g9dplsl86fq0ip8rs51c8f31i"; depends=[BiocParallel edgeR genefilter Matrix SingleCellExperiment softImpute SummarizedExperiment]; }; + zlibbioc = derive2 { name="zlibbioc"; version="1.48.0"; sha256="043xwgw3yclxnxlfl7fdwf7qf7fajzvqdv34qxnngxj9wpgha3gv"; depends=[]; }; ABAEnrichment = derive2 { name="ABAEnrichment"; version="1.24.0"; sha256="1sp3f72rzlr822dxx42bswynrwwfx6f520hdhfdikqp13p2y4044"; depends=[ABAData data_table GOfuncR gplots gtools Rcpp]; broken = true; }; ALPS = derive2 { name="ALPS"; version="1.5.0"; sha256="1aydvzc6x0871iasij68xqdlhjyg69qbqxm0qh1q52w8gj2nyq3p"; depends=[assertthat BiocParallel ChIPseeker corrplot data_table dplyr genefilter GenomicRanges GGally gghalves ggplot2 ggseqlogo Gviz magrittr org_Hs_eg_db plyr reshape2 rtracklayer stringr tibble tidyr TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; broken = true; }; + ANF = derive2 { name="ANF"; version="1.22.0"; sha256="08vkkfccfq8j4hanxsmjx5657kkw4qcp46qfhqvp1sd6wym69wzw"; depends=[Biobase igraph MASS RColorBrewer survival]; broken = true; }; ASpediaFI = derive2 { name="ASpediaFI"; version="1.11.0"; sha256="13jny6ca8hdf269z37baaggfs7jss00ln09apn42pj411g3p7nms"; depends=[BiocParallel biomaRt dplyr DRaWR e1071 fgsea GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 Gviz igraph IRanges IVAS limma Matrix reshape2 ROCR Rsamtools rtracklayer S4Vectors scales SummarizedExperiment]; broken = true; }; AffyCompatible = derive2 { name="AffyCompatible"; version="1.58.0"; sha256="1bg7iqasvfsgd9x3ykgpblqnz1q06g3ifmzj4jf2kn8kxj63wfbl"; depends=[Biostrings RCurl XML]; broken = true; }; ArrayExpressHTS = derive2 { name="ArrayExpressHTS"; version="1.47.0"; sha256="0fndc7xifzj2wq8si8q8zjjkly5ckgr28jrm3m887s7kivbvjzvv"; depends=[Biobase BiocGenerics biomaRt Biostrings bitops edgeR GenomicRanges Hmisc IRanges R2HTML RColorBrewer Rhtslib rJava Rsamtools sampling sendmailR ShortRead snow svMisc XML]; broken = true; }; Autotuner = derive2 { name="Autotuner"; version="1.7.0"; sha256="0k07gs6bnxs0894iqi1lhk96mifjcdf68bv4q9fjv50nzqpzqd8l"; depends=[assertthat Biobase cluster entropy MSnbase mzR RColorBrewer scales]; broken = true; }; BAC = derive2 { name="BAC"; version="1.58.0"; sha256="00dkhns9n1x4wmlxjcw75h7iwwk37zlv1c2fi0g1mmsw1xvdjzp6"; depends=[]; broken = true; }; + BDMMAcorrect = derive2 { name="BDMMAcorrect"; version="1.18.1"; sha256="17lsgl5mczfk2flkrclxhsqkkpr6mncccywm68l0z02pi5xhd8j7"; depends=[ape ellipse ggplot2 Rcpp RcppArmadillo RcppEigen SummarizedExperiment vegan]; broken = true; }; + BGmix = derive2 { name="BGmix"; version="1.59.0"; sha256="16fzgxcy4sk0kd67vzdxqz81s84dvh4bqss9cbl9bn6vhpfsnfyf"; depends=[KernSmooth]; broken = true; }; + BioMM = derive2 { name="BioMM"; version="1.15.0"; sha256="01lfw0npcclcyqqh2xkhjq9jw0irbk13fsj5y1b3rz1amzzngg6p"; depends=[BiocParallel CMplot e1071 ggplot2 glmnet imager lattice nsprcomp precrec ranger rms topGO vioplot xlsx]; broken = true; }; BioPlex = derive2 { name="BioPlex"; version="1.2.3"; sha256="0cn0x6ij2a3xy61bq0qy5amp0ipj4r4shh7g0vlwbkrclj9w347r"; depends=[BiocFileCache GenomeInfoDb GenomicRanges GEOquery graph SummarizedExperiment]; broken = true; }; + BiocDockerManager = derive2 { name="BiocDockerManager"; version="1.11.0"; sha256="0w393f14i253pnk0jzf2ci4g5cnxshwdjmix2r8arlnadh7spjyk"; depends=[dplyr httr memoise readr whisker]; broken = true; }; BitSeq = derive2 { name="BitSeq"; version="1.41.0"; sha256="185cssrvaw2x0r3y5fqnfqm31924ccwg33qpj3v8ywrh3x7qn22p"; depends=[IRanges Rhtslib Rsamtools S4Vectors]; broken = true; }; BrainSABER = derive2 { name="BrainSABER"; version="1.8.0"; sha256="1nxcjvaip7pp387bhdc2pmjai3chib1n63ig0cslhppzzjp2y6jd"; depends=[BiocFileCache biomaRt data_table lsa S4Vectors shiny SummarizedExperiment]; broken = true; }; CAnD = derive2 { name="CAnD"; version="1.27.0"; sha256="14x0m5iv7dm1iii5zsny9wnf4j5ddh0kij2jm658r3i4wnc99mkb"; depends=[ggplot2 reshape]; broken = true; }; + CNVgears = derive2 { name="CNVgears"; version="1.8.0"; sha256="1p7dxzkna3czkpsidj586hfwhymrjwvjr6q5f2pq7zlmpn6f8svx"; depends=[data_table ggplot2]; broken = true; }; + CSSP = derive2 { name="CSSP"; version="1.37.0"; sha256="08l8ag82n9hdrj31m37f4fm9kvxjx7xyprdlbi20aqrzsrd227gr"; depends=[]; broken = true; }; CancerInSilico = derive2 { name="CancerInSilico"; version="2.18.0"; sha256="0szbz88wnr3dbf7k9bhihv6hkr29gsp9vrllr201wx5qfzl2gncy"; depends=[BH Rcpp]; broken = true; }; + CancerSubtypes = derive2 { name="CancerSubtypes"; version="1.26.0"; sha256="06lw7b43fwh554870w71i676q6gm6kx53580cgg17a7prdjndkmr"; depends=[cluster ConsensusClusterPlus impute limma NMF sigclust survival]; broken = true; }; + ChIC = derive2 { name="ChIC"; version="1.19.0"; sha256="0zbmhixxn3skn8csz93fyyfamz1n3gzjzb2caw8ybi2cysgzz5ys"; depends=[BiocGenerics caret caTools ChIC_data genomeIntervals GenomicRanges IRanges progress randomForest Rsamtools S4Vectors]; broken = true; }; + Clonality = derive2 { name="Clonality"; version="1.47.0"; sha256="0yxwwc0sl3impvzr0bmjmdn65z6qx6lf5pwik2p8wxxgaybvff9r"; depends=[DNAcopy]; broken = true; }; + CoRegNet = derive2 { name="CoRegNet"; version="1.38.0"; sha256="19df43l35dkf36dhq8fx8a9gm1grxymrmpcix0b4qmxrzwjp0s8k"; depends=[arules igraph shiny]; broken = true; }; CompGO = derive2 { name="CompGO"; version="1.28.0"; sha256="16nlrk9wbxj51y8s7s58mdhpi70ghfacxi283406gwya3cm79f0n"; depends=[GenomicFeatures ggplot2 pathview pcaMethods reshape2 Rgraphviz rtracklayer TxDb_Mmusculus_UCSC_mm9_knownGene]; broken = true; }; CopywriteR = derive2 { name="CopywriteR"; version="2.29.0"; sha256="1h4cyrjwdazgk49yzi9lvya8bfz9r4cpq19hyzikvc81ia8zdxs6"; depends=[BiocParallel chipseq CopyhelpeR data_table DNAcopy futile_logger GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges matrixStats Rsamtools S4Vectors]; broken = true; }; CountClust = derive2 { name="CountClust"; version="1.21.0"; sha256="17px9jkpjwz0j2f5h8xv52wh24ilqvlb6dvczjc36lb7mq4cw3sq"; depends=[cowplot flexmix ggplot2 gtools limma maptpx picante plyr reshape2 slam SQUAREM]; broken = true; }; CytoTree = derive2 { name="CytoTree"; version="1.6.0"; sha256="1dsdhwjkd3ngnw50fs6vz048afk47r95vhi0wqj8sip11nhndkd8"; depends=[Biobase BiocNeighbors cluster destiny flowCore FlowSOM flowUtils ggplot2 gmodels igraph limma Matrix matrixStats mclust pheatmap prettydoc RANN Rcpp Rtsne scatterpie scatterplot3d stringr sva umap]; broken = true; }; DEComplexDisease = derive2 { name="DEComplexDisease"; version="1.18.0"; sha256="12gw9b0gdwyih51j2gzay6vxhycgc52n8svd0slv6wsbw5rc19lh"; depends=[BiocParallel ComplexHeatmap DESeq2 edgeR Rcpp SummarizedExperiment]; broken = true; }; + DMCFB = derive2 { name="DMCFB"; version="1.14.0"; sha256="1frp3czy4zry1ml2r93aw2h8arr5bfxlszimcnmqpbca0gxd6lx3"; depends=[arm benchmarkme BiocParallel data_table fastDummies GenomicRanges IRanges MASS matrixStats rtracklayer S4Vectors speedglm SummarizedExperiment tibble]; broken = true; }; + DMRforPairs = derive2 { name="DMRforPairs"; version="1.35.0"; sha256="1fdj2kk4hy1cy7lvxdcdigzvjsggsrchff10mccwwpycc4h115dj"; depends=[GenomicRanges Gviz R2HTML]; broken = true; }; + DSS = derive2 { name="DSS"; version="2.48.0"; sha256="1aslbzwqfp609ym98k6cjjf6r1ns9hxcpx4igfjhqf2v0pazz2q8"; depends=[Biobase BiocParallel bsseq]; broken = true; }; + DeMixT = derive2 { name="DeMixT"; version="1.16.0"; sha256="0671pb9400lcg530gja47c2dm8fdw5sk2prkjc8ji8aypiryjfpa"; depends=[base64enc dendextend DSS ggplot2 KernSmooth knitr matrixcalc matrixStats psych Rcpp rmarkdown SummarizedExperiment sva truncdist]; broken = true; }; + EGSEA = derive2 { name="EGSEA"; version="1.28.0"; sha256="008id8nmf5aa2vzh9is7v0fvgljgndz2b37dnnc4w4d16399bm0z"; depends=[AnnotationDbi Biobase DT edgeR EGSEAdata gage ggplot2 globaltest gplots GSVA HTMLUtils htmlwidgets hwriter limma metap org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db PADOG pathview plotly RColorBrewer safe stringi topGO]; broken = true; }; + EasyCellType = derive2 { name="EasyCellType"; version="1.2.0"; sha256="1l68g7hlcfmszf9sg1nagkv00sgd80klgi25jizabj6c1mg0pm13"; depends=[AnnotationDbi clusterProfiler dplyr forcats ggplot2 magrittr org_Hs_eg_db org_Mm_eg_db rlang]; broken = true; }; EasyqpcR = derive2 { name="EasyqpcR"; version="1.31.0"; sha256="0lb2px789668fr1gxghycy7lbdkpwmippv6xmmwws6rbanvfd6v4"; depends=[matrixStats plotrix plyr]; broken = true; }; + EpiCompare = derive2 { name="EpiCompare"; version="1.4.0"; sha256="0sizvxf8ggg8vndwyvcyr49lfllqfssv57k1i1q33h2kbk2jghl6"; depends=[AnnotationHub BiocGenerics BRGenomics ChIPseeker data_table downloadthis genomation GenomeInfoDb GenomicRanges ggplot2 htmltools IRanges plotly reshape2 rmarkdown rtracklayer stringr]; broken = true; }; + FCBF = derive2 { name="FCBF"; version="2.8.0"; sha256="1clg3s2av70j0pm0yj0ckvlklkkg5zb0r057pz6wmklllfkmx1dv"; depends=[ggplot2 gridExtra mclust pbapply SummarizedExperiment]; broken = true; }; + FScanR = derive2 { name="FScanR"; version="1.10.0"; sha256="1v4iq2wlvxf0wbs2d9ip3pcfx3a533pqp4as9pr0f6q57cvqi2bs"; depends=[]; broken = true; }; FindMyFriends = derive2 { name="FindMyFriends"; version="1.23.0"; sha256="0xbhl6ljxb522r5062vv6xdziaaqkkwylmvlymvc5f1grjz0a4z9"; depends=[Biobase BiocGenerics BiocParallel Biostrings digest dplyr filehash ggdendro ggplot2 gtable igraph IRanges kebabs Matrix Rcpp reshape2 S4Vectors]; broken = true; }; FlowRepositoryR = derive2 { name="FlowRepositoryR"; version="1.23.0"; sha256="04lk2cahf6zqnhpzh0zwas4vmvaz4kcik9ri65bs9d9ximzjam91"; depends=[jsonlite RCurl XML]; broken = true; }; + FoldGO = derive2 { name="FoldGO"; version="1.18.0"; sha256="0h08yv1kykllaanc562ncwv3ajic7cd4wcqba24nlbh6agsazwyk"; depends=[ggplot2 tidyr topGO]; broken = true; }; GAPGOM = derive2 { name="GAPGOM"; version="1.11.0"; sha256="0sl97w5zx4zdrdbcwayqyvgxspaxpbils3mpsrim0zlspjrjcy6z"; depends=[AnnotationDbi Biobase BiocFileCache data_table dplyr fastmatch GEOquery GO_db GOSemSim graph igraph magrittr Matrix matrixStats org_Hs_eg_db org_Mm_eg_db plyr RBGL]; broken = true; }; GCSConnection = derive2 { name="GCSConnection"; version="1.7.0"; sha256="1psmw3825whyzvbzqpqksgcl09b6kfyb8k5vny6ljkjbac1jzvnf"; depends=[googleAuthR googleCloudStorageR httr jsonlite Rcpp]; broken = true; }; GCSFilesystem = derive2 { name="GCSFilesystem"; version="1.6.0"; sha256="0qk8xyg06f71y4r1q1zpcj89irh9i6cd9z6nqlx635x8if84sh6d"; depends=[]; broken = true; }; + GCSscore = derive2 { name="GCSscore"; version="1.14.0"; sha256="0fqr0sgplpbkdpvwgi8fpmwmnqja41622pvkkzsalbzai021hgp3"; depends=[affxparser Biobase BiocManager data_table devtools dplR RSQLite stringr]; broken = true; }; GRridge = derive2 { name="GRridge"; version="1.22.0"; sha256="0vmwm50dwk3im3qx40vh9ipmfqywzz5fmmm79b74zjcd3qjrznf3"; depends=[glmnet graph Iso mvtnorm penalized survival]; broken = true; }; GeneAccord = derive2 { name="GeneAccord"; version="1.15.0"; sha256="1dlnqdcrl1fv5yf0zwfgkqfd2x19fv6q84p7c730nmnnaqal6md1"; depends=[biomaRt caTools dplyr ggplot2 ggpubr gtools magrittr maxLik RColorBrewer reshape2 tibble]; broken = true; }; GeneAnswers = derive2 { name="GeneAnswers"; version="2.36.0"; sha256="1f8q3hi913khyy1cc3yp2635gaik47alsqmhi0mi24cy340faplz"; depends=[annotate Biobase downloader Heatplus igraph KEGGREST MASS RBGL RColorBrewer RCurl RSQLite XML]; broken = true; }; GenoGAM = derive2 { name="GenoGAM"; version="2.11.0"; sha256="058qix2h0zm2k9csmbdhci2wqih3lyggjj591cqn0ls2nv7bnyvj"; depends=[BiocParallel Biostrings data_table DelayedArray DESeq2 futile_logger GenomeInfoDb GenomicAlignments GenomicRanges HDF5Array IRanges Matrix Rcpp RcppArmadillo rhdf5 Rsamtools S4Vectors sparseinv SummarizedExperiment]; broken = true; }; + HPAStainR = derive2 { name="HPAStainR"; version="1.9.0"; sha256="1bjysi3x8248f262v4rzi2y50rlzryb987wbvdjy6af84nq7hd09"; depends=[data_table dplyr scales shiny stringr tibble tidyr]; broken = true; }; + ILoReg = derive2 { name="ILoReg"; version="1.10.0"; sha256="10j148p28mnvgqdvsi6mwx37j25hb4hgh0206jfq8pfwd1arz8ai"; depends=[aricode cluster cowplot dendextend DescTools doRNG doSNOW dplyr fastcluster foreach ggplot2 LiblineaR Matrix parallelDist pheatmap plyr reshape2 RSpectra Rtsne S4Vectors scales SingleCellExperiment SparseM SummarizedExperiment umap]; broken = true; }; + IRISFGM = derive2 { name="IRISFGM"; version="1.8.0"; sha256="1n13rsbg5y0xnr6in18silifx8jhqzjj1vb5kpjgy5ml55im1s5r"; depends=[AdaptGauss AnnotationDbi anocva clusterProfiler colorspace DEsingle DrImpute ggplot2 ggpubr ggraph igraph knitr Matrix MCL mixtools org_Hs_eg_db org_Mm_eg_db pheatmap Polychrome RColorBrewer Rcpp scater scran Seurat SingleCellExperiment]; broken = true; }; + Informeasure = derive2 { name="Informeasure"; version="1.10.0"; sha256="08pyh4b5xiib1z91nj50ybrybyidkpv1lsp8lzf2vic4pm5g8zs6"; depends=[entropy]; broken = true; }; IsoGeneGUI = derive2 { name="IsoGeneGUI"; version="2.31.0"; sha256="1w7zxsvmcrz8cj8g8xa1vqbzfycdhgsclhcjmkqjw1hwz6fp3xgn"; depends=[Biobase ff geneplotter goric Iso IsoGene jpeg multtest ORCME ORIClust RColorBrewer Rcpp relimp tkrplot xlsx]; broken = true; }; LowMACA = derive2 { name="LowMACA"; version="1.28.0"; sha256="0j5233xziszwak65rypd9f8lsp25sdr4j5nm5kanj4d4wd0zsdqv"; depends=[BiocParallel Biostrings cBioPortalData data_table gridBase httr LowMACAAnnotation motifStack plyr RColorBrewer reshape2 stringr]; broken = true; }; MACPET = derive2 { name="MACPET"; version="1.15.1"; sha256="0742i3fxg2793lhgpxb4whh6mwvzd4bn86ykd0rv8sgilxyq5zsl"; depends=[BH bigmemory BiocParallel Biostrings futile_logger GenomeInfoDb GenomicAlignments GenomicRanges GEOquery gtools InteractionSet intervals IRanges knitr plyr Rbowtie Rcpp Rsamtools rtracklayer S4Vectors ShortRead]; broken = true; }; + MEIGOR = derive2 { name="MEIGOR"; version="1.33.0"; sha256="1lc7ahwbfgnw8h00wv3n4wx6xrvdbh2f2d2s8c5aamqkap48fjgn"; depends=[CNORode deSolve Rsolnp snowfall]; broken = true; }; MIGSA = derive2 { name="MIGSA"; version="1.21.0"; sha256="0b7w9lzi8xb1vzh7zahw7wh9jm7x1y04rs2gvvjmfbdfw085rdpm"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel data_table edgeR futile_logger ggdendro ggplot2 GO_db GOstats graph GSEABase ismev jsonlite limma matrixStats org_Hs_eg_db RBGL reshape2 Rgraphviz vegan]; broken = true; }; + MIMOSA = derive2 { name="MIMOSA"; version="1.37.0"; sha256="0dpz0r1kswdb4wzkpj5798gs627vzvvbwbkild2fc1gvmh9p8lwc"; depends=[Biobase coda data_table dplyr Formula ggplot2 MASS MCMCpack modeest plyr pracma Rcpp RcppArmadillo reshape rlang scales testthat tidyr]; broken = true; }; + MMAPPR2 = derive2 { name="MMAPPR2"; version="1.14.0"; sha256="14m41hi79f7m2qigjjcgy08awrf0654ridgm6wxcq8cmmlm68g8a"; depends=[Biobase BiocGenerics BiocParallel data_table dplyr ensemblVEP GenomeInfoDb GenomicRanges gmapR IRanges magrittr Rsamtools S4Vectors stringr tidyr VariantAnnotation VariantTools]; broken = true; }; MSEADbi = derive2 { name="MSEADbi"; version="1.2.0"; sha256="1g1kg3nh7iwg5nrpmig6srw6as4yfwmbqn965pffrk0zp19llsbf"; depends=[AnnotationDbi Biobase DBI RSQLite]; broken = true; }; MSGFgui = derive2 { name="MSGFgui"; version="1.28.0"; sha256="0dkj2nbv5xv4v4bbmf91av0ryh9pxdfp7fmbqlma4xyf1r7zmx4c"; depends=[MSGFplus mzID mzR shiny shinyFiles xlsx]; broken = true; }; MSGFplus = derive2 { name="MSGFplus"; version="1.28.0"; sha256="1k0qm049gk4gjhd88zhxxrpc944r7ndq8dys08ai2kbaqignvb7y"; depends=[mzID ProtGenerics]; broken = true; }; + MSstatsSampleSize = derive2 { name="MSstatsSampleSize"; version="1.13.0"; sha256="09gmlqxb65pa4wxh5bryb6lhs68zrfaqfl7n3k9shvzi3iw02vp3"; depends=[BiocParallel caret ggplot2 gridExtra MSstats reshape2]; broken = true; }; MSstatsTMTPTM = derive2 { name="MSstatsTMTPTM"; version="1.1.2"; sha256="16qnddwhwhjjfr5akdrmp93gkxq2r41s82hb1blbz47lwbj5kaj5"; depends=[dplyr ggplot2 gridExtra MSstatsTMT Rcpp reshape2 stringr]; broken = true; }; + MetaVolcanoR = derive2 { name="MetaVolcanoR"; version="1.14.0"; sha256="11fxjv0kb65wc2237rh3340j72v3zsd4s019bi07rbpqnl246pnj"; depends=[cowplot data_table dplyr ggplot2 htmlwidgets metafor metap plotly rlang tidyr topconfects]; broken = true; }; + Metab = derive2 { name="Metab"; version="1.33.0"; sha256="0fid4b3yk56z2sm6hxfp0z30nqjsky9sv4x49x912bw61amvrwky"; depends=[pander svDialogs xcms]; broken = true; }; MethCP = derive2 { name="MethCP"; version="1.11.0"; sha256="099jaadjfalvxpwq3k630yrqa1dfbp8rqn2fahz1rsha3y5z9bys"; depends=[BiocParallel bsseq DNAcopy DSS GenomeInfoDb GenomicRanges IRanges methylKit S4Vectors]; broken = true; }; NBSplice = derive2 { name="NBSplice"; version="1.15.0"; sha256="0yn7s7igshall34cflmdwvmknv8h1zdi6vg8svvcyn9fvzlgjdm8"; depends=[BiocParallel car edgeR ggplot2 MASS reshape2]; broken = true; }; + NanoStringQCPro = derive2 { name="NanoStringQCPro"; version="1.32.0"; sha256="0k2sgs6d25ryjlm9c17nxqqcdi3q04j3y9qb1rig23jimfvs3xs9"; depends=[AnnotationDbi Biobase knitr NMF org_Hs_eg_db png RColorBrewer]; broken = true; }; + NeighborNet = derive2 { name="NeighborNet"; version="1.18.0"; sha256="046k1799wz77ww4jhf935pfz2637dmzy7p848iyjxj1yc5g51jq8"; depends=[graph]; broken = true; }; + NeuCA = derive2 { name="NeuCA"; version="1.6.0"; sha256="01bbmgmj873r3kjvsh8p1v9jzdhfzpn2rlq29bv1xf9hfvljm0ka"; depends=[e1071 keras limma SingleCellExperiment]; broken = true; }; + NxtIRFcore = derive2 { name="NxtIRFcore"; version="1.6.0"; sha256="1x3645v6ar8mpmyk6hd5w3m38496g68l2vdh80vh0hhlqlrp17n2"; depends=[AnnotationHub BiocFileCache BiocGenerics BiocParallel Biostrings BSgenome data_table DelayedArray DelayedMatrixStats fst genefilter GenomeInfoDb GenomicRanges ggplot2 HDF5Array IRanges magrittr NxtIRFdata plotly R_utils Rcpp RcppProgress rhdf5 rtracklayer S4Vectors SummarizedExperiment zlibbioc]; broken = true; }; + ODER = derive2 { name="ODER"; version="1.6.0"; sha256="17c3hvdghli6i88yqy6dclzyad60s0d6y4hng6i4bycc9fnan41w"; depends=[BiocFileCache BiocGenerics dasper data_table derfinder dplyr GenomeInfoDb GenomicRanges ggplot2 ggpubr ggrepel IRanges magrittr megadepth plyr purrr rtracklayer S4Vectors stringr tibble]; broken = true; }; + OmicsLonDA = derive2 { name="OmicsLonDA"; version="1.15.0"; sha256="1kn26k0lnk7hgfzk1kh5bh41zkia8a4pzsfr35mbjrflcxmvgk2w"; depends=[BiocGenerics BiocParallel ggplot2 gss plyr pracma SummarizedExperiment zoo]; broken = true; }; + PERFect = derive2 { name="PERFect"; version="1.14.0"; sha256="0ygbirfnp122c8jzrig5cnm6rxyhz126ixl5ca49i13kizcv2ns9"; depends=[fitdistrplus ggplot2 Matrix phyloseq psych sn zoo]; broken = true; }; + PFP = derive2 { name="PFP"; version="1.7.0"; sha256="1328a73ggg7l1drjbmv67jcvlv83khn1k252mf81xj4gf213d0di"; depends=[clusterProfiler ggplot2 graph igraph KEGGgraph magrittr plyr tidyr]; broken = true; }; PSICQUIC = derive2 { name="PSICQUIC"; version="1.34.0"; sha256="0gkkxxbc2a7cin92qwn1masqfigyz9s4fhyy2daa17r3ckk4ccgx"; depends=[BiocGenerics biomaRt httr IRanges plyr RCurl]; broken = true; }; PanVizGenerator = derive2 { name="PanVizGenerator"; version="1.22.0"; sha256="0rhx2jc5kc9bl00v16frh8b4075n0jqn4s37pkvqp3ypcbqws32d"; depends=[igraph jsonlite pcaMethods shiny]; broken = true; }; PoTRA = derive2 { name="PoTRA"; version="1.13.0"; sha256="1a32d1wndb24pxza3h53yddj9z2clff5srny2k00pbbfq1h99mjf"; depends=[BiocGenerics graph graphite igraph org_Hs_eg_db]; broken = true; }; PrecisionTrialDrawer = derive2 { name="PrecisionTrialDrawer"; version="1.11.0"; sha256="1miw8rj1zn1xv97dkgs66k9g21i6gp3j2m1l1akysskczgam3i2c"; depends=[BiocParallel biomaRt brglm data_table DT GenomicRanges ggplot2 ggrepel googleVis httr IRanges jsonlite LowMACAAnnotation magrittr matrixStats RColorBrewer reshape2 S4Vectors shiny shinyBS stringr XML]; broken = true; }; ProteomicsAnnotationHubData = derive2 { name="ProteomicsAnnotationHubData"; version="1.24.0"; sha256="0qs5hbx7pww7qxxaimp2xqvs3lwcd41ndls0xcvvlk7pnp4i4sk8"; depends=[AnnotationHub AnnotationHubData Biobase BiocManager Biostrings GenomeInfoDb MSnbase mzR RCurl]; broken = true; }; PubScore = derive2 { name="PubScore"; version="1.8.0"; sha256="18bmzvv6mxrdlh297i29q24vi5rc4x2mjaryi5asiki186x0hy8d"; depends=[dplyr ggplot2 ggrepel igraph intergraph network progress rentrez sna]; broken = true; }; + RCSL = derive2 { name="RCSL"; version="1.8.0"; sha256="149bh9bd6h9qg82cnbnl9m8w8d10cw8b0z31qbyb9byfakn0a9hn"; depends=[ggplot2 igraph NbClust pracma RcppAnnoy Rtsne umap]; broken = true; }; RGalaxy = derive2 { name="RGalaxy"; version="1.38.0"; sha256="0vfsn8cj5c8n58ra1qz85gwmm1747lm3xdz17m20f73g8q78nymd"; depends=[Biobase BiocGenerics optparse roxygen2 XML]; broken = true; }; + RIPAT = derive2 { name="RIPAT"; version="1.10.0"; sha256="154a79xyihxkg3sbwxz9ch0ixqlqv9gwkpsv88i55c75qyzkx2sm"; depends=[biomaRt GenomicRanges ggplot2 IRanges karyoploteR openxlsx plyr regioneR rtracklayer stringr]; broken = true; }; RNASeqR = derive2 { name="RNASeqR"; version="1.16.0"; sha256="0m7d3mm644n81630v2m6vv7798x3rjshb9jcp63xq631j1wmk63i"; depends=[ballgown Biostrings clusterProfiler corrplot DESeq2 DOSE edgeR factoextra FactoMineR ggplot2 gridExtra org_Hs_eg_db org_Sc_sgd_db pathview PerformanceAnalytics pheatmap rafalib reshape2 reticulate Rsamtools stringr systemPipeR systemPipeRdata]; broken = true; }; + RNAdecay = derive2 { name="RNAdecay"; version="1.19.0"; sha256="1qn9ymsj87x9spnqrdga9dqnvz4s4nq7f47amd9gvmfj1q0k3v5a"; depends=[ggplot2 gplots nloptr scales TMB]; broken = true; }; Rcade = derive2 { name="Rcade"; version="1.39.1"; sha256="05cli4h96xcsf6xas9z5ma8bzh10grlwkfgmz4a115ykblwyaj4r"; depends=[baySeq GenomeInfoDb GenomicAlignments GenomicRanges IRanges plotrix rgl Rsamtools S4Vectors]; broken = true; }; + RcisTarget = derive2 { name="RcisTarget"; version="1.20.0"; sha256="0dp2y85mfn995rvg698xnxlkz1kd8g0byjypxx62cpfldnkrinxl"; depends=[arrow AUCell BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges GSEABase R_utils S4Vectors SummarizedExperiment tibble]; broken = true; }; + RefPlus = derive2 { name="RefPlus"; version="1.70.0"; sha256="0ii4pki0gqsfcjlfwq5hx67yf0id2krrgs8qnss4gijj27m8h86m"; depends=[affy affyPLM Biobase preprocessCore]; broken = true; }; + RegEnrich = derive2 { name="RegEnrich"; version="1.10.0"; sha256="09gkmna3w0x5m0mpq1llrqsrknlx2hncn74f4fksmx4r4mj0gphd"; depends=[BiocParallel BiocSet DESeq2 DOSE dplyr fgsea ggplot2 limma magrittr randomForest reshape2 S4Vectors SummarizedExperiment tibble WGCNA]; broken = true; }; Rgin = derive2 { name="Rgin"; version="1.15.0"; sha256="1x5zj2d5rvsr2xh0ifpnrys9v91dal1xxhv5mmk16rs8wzwqpqba"; depends=[RcppEigen]; broken = true; }; RmiR = derive2 { name="RmiR"; version="1.49.0"; sha256="16nwh4a97qvyicm4f102xs52lx8cld0b80fykgil86kkd6v8zlja"; depends=[DBI RmiR_Hs_miRNA]; broken = true; }; RpsiXML = derive2 { name="RpsiXML"; version="2.38.0"; sha256="0x4nph4xss4piq4fgijjjj33yrqqfdbsgn9wvqy17nglvz5gi7bi"; depends=[annotate AnnotationDbi Biobase graph hypergraph RBGL XML]; broken = true; }; + SCATE = derive2 { name="SCATE"; version="1.10.0"; sha256="1fkswn9xlbr4mrnr62yzk51dri7rzbvf28whh7qhdfxgyvavw439"; depends=[GenomicAlignments GenomicRanges mclust preprocessCore Rtsne SCATEData splines2 xgboost]; broken = true; }; + SEPIRA = derive2 { name="SEPIRA"; version="1.20.0"; sha256="1yhlm6l9jv8fhdhnhpj7r8cdpnrp1la287x85gcssqjnv5v4k047"; depends=[corpcor limma]; broken = true; }; + SISPA = derive2 { name="SISPA"; version="1.30.0"; sha256="0glqk2p06brw9a9prccil02z82nhq2izh2sgfrlmi1kpf8mgszl3"; depends=[changepoint data_table genefilter ggplot2 GSVA plyr]; broken = true; }; SLGI = derive2 { name="SLGI"; version="1.54.0"; sha256="03jwdq4k44rys3f773c6l985a6v1bacbdghw97p0qpwspmzra8rs"; depends=[AnnotationDbi Biobase BiocGenerics GO_db lattice]; broken = true; }; + SPONGE = derive2 { name="SPONGE"; version="1.22.0"; sha256="1ayvigqj5j7s7031gpyhaz3m3z85w9j8j850pggshy9gixvy1mnp"; depends=[Biobase biomaRt caret ComplexHeatmap cvms data_table doRNG dplyr expm foreach ggplot2 ggpubr ggridges glmnet gRbase igraph iterators logging MASS MetBrewer miRBaseConverter ppcor randomForest rlang stringr tidyr tidyverse tnet]; broken = true; }; STAN = derive2 { name="STAN"; version="2.26.2"; sha256="0dd4hb2iabvnr6v0ys4jslj7611z1hii8hxkdvwrjbz4nn678wkv"; depends=[BiocGenerics GenomeInfoDb GenomicRanges Gviz IRanges poilog Rsolnp S4Vectors]; broken = true; }; + STROMA4 = derive2 { name="STROMA4"; version="1.24.0"; sha256="1x3zgxkcck8ffh89mql45cp54c94n64kf9x6dan9wl24bj3x869f"; depends=[Biobase BiocParallel cluster matrixStats]; broken = true; }; ScISI = derive2 { name="ScISI"; version="1.65.0"; sha256="0q3bbfsink5d8xslhp129qwvlq5mdzw8zkv9msd0q8qmkclsbiz1"; depends=[annotate AnnotationDbi apComplex GO_db org_Sc_sgd_db RpsiXML]; broken = true; }; Sushi = derive2 { name="Sushi"; version="1.34.0"; sha256="0adswrbzd93rhy3q56ypwkrk6155vd4zxapvznswyjlxp8ha813q"; depends=[biomaRt zoo]; broken = true; }; SwimR = derive2 { name="SwimR"; version="1.29.0"; sha256="0n58x3i4k3icvhg8z60zlhpszv8bb9pain07nl9rszyvmpi71vg2"; depends=[gplots R2HTML signal]; broken = true; }; - TCC = derive2 { name="TCC"; version="1.38.0"; sha256="17kkn8xfkf7g8y51nnzsrgn8v65qlh8a4jysn03phk7pnfrmj7jl"; depends=[baySeq DESeq2 edgeR ROC]; broken = true; }; TCGAbiolinksGUI = derive2 { name="TCGAbiolinksGUI"; version="1.23.0"; sha256="16757szccczlv1q35y1cnmlkr12s46f63z7ijffpb15q85xlaqdx"; depends=[caret clusterProfiler colourpicker data_table downloader DT ELMER ggplot2 ggrepel maftools pathview plotly readr sesame shiny shinyBS shinydashboard shinyFiles shinyjs stringr SummarizedExperiment TCGAbiolinks TCGAbiolinksGUI_data]; broken = true; }; TDARACNE = derive2 { name="TDARACNE"; version="1.47.0"; sha256="19zf7x2wcfnij1nlh623kim63d6wb3p42mwsn35msds778jvcbxq"; depends=[Biobase Rgraphviz]; broken = true; }; TSRchitect = derive2 { name="TSRchitect"; version="1.20.0"; sha256="1v9zz8ny9rwkyz98cv49l9ilh68h8mvm2x44n8i8rvjayc50zi9i"; depends=[AnnotationHub BiocGenerics BiocParallel dplyr GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges readxl Rsamtools rtracklayer S4Vectors SummarizedExperiment]; broken = true; }; @@ -2258,42 +2297,68 @@ in with self; { Travel = derive2 { name="Travel"; version="1.6.0"; sha256="074v9hl4gzy8081mlas3mjaplchjrmk2bl4f5nkdjclh46xf3wgg"; depends=[Rcpp]; broken = true; }; XCIR = derive2 { name="XCIR"; version="1.7.0"; sha256="0n42pw01wv1sk06hby9kwijx6zwaw4lrlpsa0wlkrkf323slkllw"; depends=[biomaRt data_table ggplot2 IRanges readxl S4Vectors seqminer VariantAnnotation]; broken = true; }; affyPara = derive2 { name="affyPara"; version="1.51.0"; sha256="01165f84snc3ksk0ghw631i2l5jklp4n826jwy5926wvxy3zlwz0"; depends=[affy affyio aplpack snow vsn]; broken = true; }; + alpine = derive2 { name="alpine"; version="1.26.0"; sha256="1md4m9ln1mpxf7d2h7jnsjyi4zrviiqn9fzk1gkz2n6qj7jwpqbb"; depends=[Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph IRanges RBGL Rsamtools S4Vectors speedglm stringr SummarizedExperiment]; broken = true; }; alsace = derive2 { name="alsace"; version="1.30.0"; sha256="17adr64g3l2syj0shi57nrvx105w7wrkiqm0qp3hwlk1ivmnadzn"; depends=[ALS ptw]; broken = true; }; - baySeq = derive2 { name="baySeq"; version="2.31.0"; sha256="0lq2wfm3ibrpha9mqhhp6dgsx4jm2kwxvvrj0b62dzqspvg743wh"; depends=[abind edgeR GenomicRanges]; broken = true; }; - biomvRCNS = derive2 { name="biomvRCNS"; version="1.38.0"; sha256="0n026b744ah5kcnipsyiqqs7vlz5n5im1kgv35i2pgxyzvf7a8sn"; depends=[GenomicRanges Gviz IRanges mvtnorm]; broken = true; }; + animalcules = derive2 { name="animalcules"; version="1.16.0"; sha256="1z46lpd2zi3b88i27qm48wy4acb2xsjh63zgxhfx2y4bgvr29ni7"; depends=[ape assertthat biomformat caret covr DESeq2 dplyr DT forcats ggplot2 glmnet GUniFrac lattice limma magrittr Matrix MultiAssayExperiment plotly plotROC rentrez reshape2 S4Vectors scales shiny shinyjs SummarizedExperiment tibble tsne umap vegan XML]; broken = true; }; + bigPint = derive2 { name="bigPint"; version="1.15.0"; sha256="1r9gr5f9as09ifagal5k7713h95qjw508cf8ny3j1jmqd24v6xhs"; depends=[DelayedArray dplyr GGally ggplot2 gridExtra hexbin Hmisc htmlwidgets plotly plyr RColorBrewer reshape shiny shinycssloaders shinydashboard stringr SummarizedExperiment tidyr]; broken = true; }; + borealis = derive2 { name="borealis"; version="1.4.0"; sha256="0qnr4rr9jzxmv041qp2j1phppxbir7d15yxsbxlyhppvcipm0qx0"; depends=[Biobase bsseq cowplot doParallel dplyr DSS foreach gamlss gamlss_dist GenomicRanges ggplot2 plyr purrr R_utils rlang snow]; broken = true; }; bridge = derive2 { name="bridge"; version="1.62.0"; sha256="02rf15f3r1kazxml8mk9mi1zxgglsdfrpbg7ny9w0s65f413grg8"; depends=[rama]; broken = true; }; caOmicsV = derive2 { name="caOmicsV"; version="1.25.0"; sha256="10i4imjihmssdwfys21fsqng8zfp7sxzkc58m8qmnh6s5sccb3sz"; depends=[bc3net igraph]; broken = true; }; + ccrepe = derive2 { name="ccrepe"; version="1.36.0"; sha256="0iqrz1gqaxv5scpxz0jpz2p35rs21r7rlkl0gxf3xfqs6p9gz5n3"; depends=[infotheo]; broken = true; }; cellTree = derive2 { name="cellTree"; version="1.27.0"; sha256="0yfr59fcbdj03ikkpvw1qcxqrjbkz7nkfmb5m1xr4k9qs39bq9sb"; depends=[gplots igraph maptpx slam topGO topicmodels xtable]; broken = true; }; + cellscape = derive2 { name="cellscape"; version="1.24.0"; sha256="0g7way8s7xmdx8266vv4597znyh4kkmc1cvxg4i0x3wkv2rq4gac"; depends=[dplyr gtools htmlwidgets jsonlite plyr reshape2 stringr]; broken = true; }; + chromswitch = derive2 { name="chromswitch"; version="1.22.0"; sha256="007wa8980hkpja33ph3b3fjsjrf91cnwc0a7y4014k8xxmmgfdh7"; depends=[Biobase BiocParallel cluster dplyr GenomicRanges gplots IRanges lazyeval magrittr matrixStats NMF rtracklayer S4Vectors tidyr]; broken = true; }; clonotypeR = derive2 { name="clonotypeR"; version="1.34.0"; sha256="15nnj6c23bcnln1xsmxs7f13m13lvn6did7lvp7ij8gcb0vg2g6q"; depends=[]; broken = true; }; - clusterSeq = derive2 { name="clusterSeq"; version="1.22.0"; sha256="05ap73pyax6nfb474d2xda5279c8z84pvkshzxwp1q3rb8fn4s6d"; depends=[baySeq BiocGenerics BiocParallel]; broken = true; }; coexnet = derive2 { name="coexnet"; version="1.19.1"; sha256="0zw8a8pqmajqnv5n6i7fn7krwax81sd4c6wqm4zr61fy2blqzv3h"; depends=[acde affy Biobase GEOquery igraph limma minet rmarkdown siggenes STRINGdb SummarizedExperiment vsn]; broken = true; }; + compartmap = derive2 { name="compartmap"; version="1.18.0"; sha256="0lvgwnp5cgn96m9y4snpczfbfs72lxbaa36lnmwa7j07jy4s9108"; depends=[BiocSingular DelayedArray DelayedMatrixStats GenomicRanges ggplot2 HDF5Array Matrix RaggedExperiment reshape2 RMTstat rtracklayer scales SummarizedExperiment]; broken = true; }; conclus = derive2 { name="conclus"; version="1.5.0"; sha256="09rk73sxqxsy0zq07n67jxqbzb1rlxlj0phg6987szdjwxmag6jc"; depends=[AnnotationDbi Biobase BiocFileCache biomaRt clusterProfiler dbscan doParallel dplyr factoextra foreach fpc GEOquery ggplot2 gridExtra org_Hs_eg_db org_Mm_eg_db pheatmap rlang Rtsne scales scater scran SingleCellExperiment stringr SummarizedExperiment]; broken = true; }; copynumber = derive2 { name="copynumber"; version="1.38.0"; sha256="1a664bllaq9pbb5cpd01j919qirylvnm8qd49lwlz89jvqjdri19"; depends=[BiocGenerics GenomicRanges IRanges S4Vectors]; broken = true; }; + crisprseekplus = derive2 { name="crisprseekplus"; version="1.26.0"; sha256="1ccz944jwlcnflrdh1aamfc5b03n6pys65b13f049f0x214vqg68"; depends=[AnnotationDbi BiocManager BSgenome CRISPRseek DT GenomicFeatures GenomicRanges GUIDEseq hash shiny shinyjs]; broken = true; }; ctgGEM = derive2 { name="ctgGEM"; version="1.7.0"; sha256="0hmapz96r024r3bws1wf0spd0i81viyma859y9nn93jrwxscrcdb"; depends=[Biobase BiocGenerics igraph Matrix monocle sincell SummarizedExperiment TSCAN]; broken = true; }; + dasper = derive2 { name="dasper"; version="1.9.0"; sha256="095ldl40cay5n8lkp8y69lbmflhnbwm1b075s4zgpagn81awp0cn"; depends=[basilisk BiocFileCache BiocParallel data_table dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggpubr ggrepel IRanges magrittr megadepth plyranges readr reticulate rtracklayer S4Vectors stringr SummarizedExperiment tidyr]; broken = true; }; deco = derive2 { name="deco"; version="1.13.0"; sha256="0d4abif3v62cbas6hl7pfw8q8jihh7nsra76k9cm6kz54qw4fbnw"; depends=[ade4 AnnotationDbi Biobase BiocParallel BiocStyle cluster foreign gdata ggplot2 gplots gridExtra limma locfit made4 RColorBrewer reshape2 scatterplot3d sfsmisc SummarizedExperiment]; broken = true; }; diffloop = derive2 { name="diffloop"; version="1.24.0"; sha256="0v0jg9y08xzw775x2lm82ig1ag4wjf4z2l6a66zmk6qbn59dwj1g"; depends=[Biobase biomaRt data_table dplyr edgeR foreach GenomeInfoDb GenomicRanges ggplot2 IRanges limma locfit matrixStats pbapply plyr readr reshape2 rtracklayer S4Vectors statmod Sushi]; broken = true; }; + dpeak = derive2 { name="dpeak"; version="1.12.0"; sha256="1fx2rrcqmjckk5kk3mfa56b1393b2c8sf566q95d8zmlsvkl03w5"; depends=[BSgenome IRanges MASS Rcpp]; broken = true; }; dualKS = derive2 { name="dualKS"; version="1.53.0"; sha256="16cfcylmmcj8x2808529lbpm7qbbrxygic0jkaglhqcdxgrqw3rw"; depends=[affy Biobase]; broken = true; }; + eegc = derive2 { name="eegc"; version="1.26.0"; sha256="0m67zjsq2xzk292rp0hdlj8lbfgci2dsdb5hmn4b591fqawwsqbb"; depends=[AnnotationDbi clusterProfiler DESeq2 DOSE edgeR ggplot2 gplots igraph limma org_Hs_eg_db org_Mm_eg_db pheatmap R_utils S4Vectors sna wordcloud]; broken = true; }; epihet = derive2 { name="epihet"; version="1.13.0"; sha256="1p5sgb438yj6h0fv0v17dhz1pl32vai5zcbmgpgagrd5829a6a7r"; depends=[data_table doParallel foreach GenomicRanges ggplot2 igraph IRanges pheatmap qvalue ReactomePA Rtsne S4Vectors WGCNA]; broken = true; }; + farms = derive2 { name="farms"; version="1.52.0"; sha256="1w1bw8bglcmjsz83vc8s5wl1c58x2bvd365k984pxaw3xl9fj92j"; depends=[affy Biobase MASS]; broken = true; }; + fcoex = derive2 { name="fcoex"; version="1.13.0"; sha256="085r5s5sqrj2701zk5kv3818ksxvxzd76lknzi6bk1svw4d3lsyc"; depends=[clusterProfiler data_table dplyr FCBF ggplot2 ggrepel igraph intergraph Matrix network pathwayPCA progress scales SingleCellExperiment sna stringr]; broken = true; }; flowCL = derive2 { name="flowCL"; version="1.35.0"; sha256="1jxr0zn3fgm5nqishssxh332mmxfz3fc9zgshn0lbq4avxc2x128"; depends=[graph Rgraphviz]; broken = true; }; + flowMap = derive2 { name="flowMap"; version="1.38.0"; sha256="1mjv55cg5q6gx32sn6h5aqzrpjb5awb6489j8dya56fbivjs7zxj"; depends=[abind ade4 doParallel Matrix reshape2 scales]; broken = true; }; flowUtils = derive2 { name="flowUtils"; version="1.59.0"; sha256="11x362dqb9mjlsbq6g1qkb8hhnkvm22z5s3wkgmpyy9kyifjkm26"; depends=[Biobase corpcor flowCore graph RUnit XML]; broken = true; }; gaia = derive2 { name="gaia"; version="2.39.0"; sha256="023mw2dy6dni7h7a1ild1y6l741kp9bmjzzfyi70jipji1jig4pa"; depends=[]; broken = true; }; + genbankr = derive2 { name="genbankr"; version="1.27.0"; sha256="0fv87cf2y10ijlb0g1x9g9wh95qyljqb1c7k1ihbnjcg36xkh8lc"; depends=[Biobase BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges rtracklayer S4Vectors VariantAnnotation]; broken = true; }; genotypeeval = derive2 { name="genotypeeval"; version="1.30.0"; sha256="0mi1d86i4v8gafwszy978n61s5pszrsmbh1in4nggdqwvwnvkqnl"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges ggplot2 IRanges rtracklayer VariantAnnotation]; broken = true; }; genphen = derive2 { name="genphen"; version="1.24.0"; sha256="1m60qagcxviix4zjzfhvrwchbjq2clss6mivb8q07bcq369yw1b8"; depends=[Biostrings doParallel e1071 foreach ranger Rcpp rPref rstan]; broken = true; }; gpart = derive2 { name="gpart"; version="1.13.0"; sha256="1518wjkaw22ckgpwl6si83bhijvib0r0kgs9s4das41f0ygi92sd"; depends=[AnnotationDbi biomaRt data_table GenomicRanges Homo_sapiens igraph IRanges OrganismDbi Rcpp TxDb_Hsapiens_UCSC_hg38_knownGene]; broken = true; }; gprege = derive2 { name="gprege"; version="1.39.0"; sha256="12yjyb7a7jc86hdi3a3cavqxfzkhmds1m2vigzw5ihhx6028pa78"; depends=[]; broken = true; }; - hypeR = derive2 { name="hypeR"; version="1.14.0"; sha256="0vni4s1rvdjm4l5jaa2kq0i1z87jw09vd1pw63aa0v6qk1vr96vc"; depends=[dplyr ggforce ggplot2 htmltools httr igraph kableExtra magrittr msigdbr openxlsx purrr R6 reactable reshape2 rlang rmarkdown scales shiny stringr visNetwork]; broken = true; }; + gscreend = derive2 { name="gscreend"; version="1.14.0"; sha256="17fx02qvsixvbvnb47xc47lwjh388cv2haar5kp7kjkwgfl6kjl4"; depends=[BiocParallel fGarch nloptr SummarizedExperiment]; broken = true; }; imageHTS = derive2 { name="imageHTS"; version="1.48.0"; sha256="124pksw08b88bj7l8pckzvgk6sf54d633cnbq2r5il7a09i4caim"; depends=[Biobase cellHTS2 e1071 EBImage hwriter vsn]; broken = true; }; inveRsion = derive2 { name="inveRsion"; version="1.43.0"; sha256="0h2q10xf4x22hy7780w4pvq488921wzjngly8qcc97sa8iacssk3"; depends=[haplo_stats]; broken = true; }; iteremoval = derive2 { name="iteremoval"; version="1.15.1"; sha256="0bwl8lzxvf5azwyacv9x16l4kyi8l00xny2s83gp2kng5gyz8602"; depends=[GenomicRanges ggplot2 magrittr SummarizedExperiment]; broken = true; }; + kissDE = derive2 { name="kissDE"; version="1.20.0"; sha256="1dijdss2qakvgxshcpd5n95zly5q4b7fpkvxh265g8fj4b3hzf62"; depends=[ade4 aods3 Biobase DESeq2 doParallel DSS DT factoextra foreach ggplot2 gplots matrixStats shiny shinycssloaders]; broken = true; }; + logitT = derive2 { name="logitT"; version="1.58.0"; sha256="0wd26k2n29i58iz9nr50xjsvc2s5ynbca0y2y4j9xqbvvpfjzk3v"; depends=[affy]; broken = true; }; mAPKL = derive2 { name="mAPKL"; version="1.28.0"; sha256="0nj2r54djps19lar2sp6bhdi5nkid195xyaqzzam2r7piwr8xv8s"; depends=[AnnotationDbi apcluster Biobase clusterSim e1071 igraph limma multtest parmigene reactome_db]; broken = true; }; maanova = derive2 { name="maanova"; version="1.68.2"; sha256="1rcxvv0vcvksswjd3vry68nmvrbh05p5pica48bwcar93jh70bx9"; depends=[Biobase]; broken = true; }; + maigesPack = derive2 { name="maigesPack"; version="1.64.0"; sha256="106idgazh2wkv2z63wrbn6f4gaxzkmn95i8583a99f6mqnfbhcqx"; depends=[convert graph limma marray]; broken = true; }; + mbOmic = derive2 { name="mbOmic"; version="1.3.0"; sha256="079qs5apyqli7h16c6drmhibmc356rnllxks5ddfnnq7hdzmhdbw"; depends=[cluster clusterSim data_table doParallel igraph psych visNetwork WGCNA]; broken = true; }; + metagene = derive2 { name="metagene"; version="2.31.0"; sha256="0kydqb2g1xbkwk5g738f1pyx1hcfmym3z101vawvcjmmgld3kcp8"; depends=[BiocParallel data_table EnsDb_Hsapiens_v86 ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges magrittr matrixStats purrr R6 Rsamtools rtracklayer stringr]; broken = true; }; metaseqR2 = derive2 { name="metaseqR2"; version="1.10.0"; sha256="0m5dyg0gsvif02mgz0mcdk8annmqy4a6s5ldk3d9hjjzcgchpkpv"; depends=[ABSSeq baySeq Biobase BiocGenerics BiocParallel biomaRt Biostrings corrplot DESeq2 DSS DT EDASeq edgeR genefilter GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gplots harmonicmeanp heatmaply htmltools httr IRanges jsonlite lattice limma locfit log4r magrittr MASS Matrix NBPSeq pander qvalue rmarkdown rmdformats Rsamtools RSQLite rtracklayer S4Vectors stringr SummarizedExperiment survcomp VennDiagram vsn yaml zoo]; broken = true; }; metavizr = derive2 { name="metavizr"; version="1.21.0"; sha256="1d88f854sn5m2pklsyvkmq05yzjanxlnkz5gpzban62qq1mpvims"; depends=[Biobase data_table digest epivizr epivizrData epivizrServer epivizrStandalone GenomeInfoDb httr metagenomeSeq phyloseq vegan]; broken = true; }; methyAnalysis = derive2 { name="methyAnalysis"; version="1.34.0"; sha256="05k3n7iy5ijidbnblbqqas8dsj8drwzbhyrbs8wl1ypkg51havi0"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt genefilter GenomeInfoDb GenomicFeatures GenomicRanges Gviz IRanges lumi methylumi org_Hs_eg_db rtracklayer SummarizedExperiment VariantAnnotation]; broken = true; }; + methylSig = derive2 { name="methylSig"; version="1.12.0"; sha256="1k7nm84k870cqzr4dvi5vfz3sphs091l0a677kdk4gzs5nkg5818"; depends=[bsseq DelayedArray DelayedMatrixStats DSS GenomeInfoDb GenomicRanges IRanges S4Vectors]; broken = true; }; + miRBaseConverter = derive2 { name="miRBaseConverter"; version="1.24.0"; sha256="04yjfi670lqk4c254isadzaj1mp514i4ns9h7mwdyvagfq6vhsvw"; depends=[]; broken = true; }; + miRSM = derive2 { name="miRSM"; version="1.18.0"; sha256="1slb957ns31zxcnbfs5hp7nx7ypfh5as26s4ih5rvl153a5msd1k"; depends=[BiBitR BicARE biclust Biobase dbscan dynamicTreeCut energy fabia flashClust GFA GSEABase iBBiG igraph isa2 linkcomm MatrixCorrelation MCL mclust miRspongeR NMF org_Hs_eg_db PMA ppclust Rcpp rqubic s4vd SOMbrero subspace SummarizedExperiment WGCNA]; broken = true; }; + miRmine = derive2 { name="miRmine"; version="1.22.0"; sha256="1d0ni3lavpiv2qzwlmrsjym75cip3i9q1bg9rwa04h61rz2smylg"; depends=[SummarizedExperiment]; broken = true; }; + miRspongeR = derive2 { name="miRspongeR"; version="2.4.0"; sha256="1mzh0cjm2sbcxw3wgfa6yg98ynl74x41g15vsf54n1m1ys5s7xk0"; depends=[clusterProfiler corpcor doParallel DOSE foreach igraph linkcomm MCL org_Hs_eg_db Rcpp ReactomePA SPONGE survival]; broken = true; }; + multiOmicsViz = derive2 { name="multiOmicsViz"; version="1.24.0"; sha256="129k094ml403w25k3kipzbavx78p14jxq40a8d733qyqp8mcnlrs"; depends=[doParallel foreach SummarizedExperiment]; broken = true; }; + multiSight = derive2 { name="multiSight"; version="1.7.0"; sha256="1v2ml1qh250lidm5a0xw4b3xbxd2as86p703qn5s8m1xi6l89b9c"; depends=[anyLib biosigner caret clusterProfiler config DESeq2 dplyr DT easyPubMed enrichplot ggnewscale golem htmltools igraph infotheo metap mixOmics networkD3 ppcor R6 ReactomePA rmarkdown rWikiPathways shiny shinydashboard stringr]; broken = true; }; netbiov = derive2 { name="netbiov"; version="1.31.0"; sha256="0ldpbq8d7hq6sa5qcc5qh23plczg35170v3fifyz6a47vghr5ff9"; depends=[igraph]; broken = true; }; netboxr = derive2 { name="netboxr"; version="1.9.0"; sha256="1brnm60745s2axls4p6qcxipjjr3ph9ijg1q604fgm42rf6i7qzm"; depends=[clusterProfiler data_table DT gplots igraph jsonlite plyr RColorBrewer]; broken = true; }; networkBMA = derive2 { name="networkBMA"; version="2.35.0"; sha256="0xa0b977apbr6p9kqk38582af635kp99csj32bsn2bf8pjsmd4d2"; depends=[BH BMA leaps Rcpp RcppArmadillo RcppEigen]; broken = true; }; oneSENSE = derive2 { name="oneSENSE"; version="1.20.0"; sha256="1lzb8i3frv3va2q28glwnjwszrynhky5y8fx10q4h52p2wqgc4v3"; depends=[flowCore gplots plotly Rtsne scatterplot3d shiny shinyFiles webshot]; broken = true; }; + pathVar = derive2 { name="pathVar"; version="1.30.0"; sha256="1q0m4yb4jvi61f3hl7mpbnl9y0y4pqhspi1gn3wp5lf86j8c40jp"; depends=[data_table EMT ggplot2 gridExtra Matching mclust]; broken = true; }; perturbatr = derive2 { name="perturbatr"; version="1.13.0"; sha256="0ssk8cr42hibn917s2z2nzcdan54c7xiydypbi8f3g4w68q4ly31"; depends=[assertthat diffusr doParallel dplyr foreach formula_tools ggplot2 igraph lazyeval lme4 magrittr rlang scales tibble tidyr]; broken = true; }; pkgDepTools = derive2 { name="pkgDepTools"; version="1.63.0"; sha256="10q0z1ps073py82zqii4sfdhnpvcyj4sx1yx3lzy5c41l8py6lag"; depends=[graph RBGL]; broken = true; }; plethy = derive2 { name="plethy"; version="1.36.0"; sha256="09929w6rd84hvz6fiydd5v0php9gvbvxgvsnxvkzwyxfmmmx1dzr"; depends=[Biobase BiocGenerics DBI ggplot2 IRanges plyr RColorBrewer reshape2 RSQLite S4Vectors Streamer]; broken = true; }; @@ -2301,18 +2366,22 @@ in with self; { predictionet = derive2 { name="predictionet"; version="1.40.0"; sha256="1f3ghlcfnls9mx2hbs923rdz7kn0wdhy2csp1y1286c5q5dybrgh"; depends=[catnet igraph MASS penalized RBGL]; broken = true; }; proBatch = derive2 { name="proBatch"; version="1.14.0"; sha256="079dh61v1dmsasrh5sn6sn1rgi34mavxa1sc1y8x6wqjwabm4w1j"; depends=[Biobase corrplot data_table dplyr ggfortify ggplot2 lazyeval lubridate magrittr pheatmap preprocessCore purrr pvca RColorBrewer reshape2 rlang scales sva tibble tidyr viridis wesanderson WGCNA]; broken = true; }; proFIA = derive2 { name="proFIA"; version="1.23.0"; sha256="0y08vj401f45dvgxjwjx94hvd0rk1wljk8n1irpkdafg24gv4fvj"; depends=[Biobase BiocParallel minpack_lm missForest pracma ropls xcms]; broken = true; }; + proteasy = derive2 { name="proteasy"; version="1.2.0"; sha256="1mfk69k44krdj4wp6xpil391j9jrppyx1crvra525p8hahzc2d5m"; depends=[AnnotationFilter data_table EnsDb_Hsapiens_v86 EnsDb_Mmusculus_v79 EnsDb_Rnorvegicus_v79 ensembldb Rcpi stringr]; broken = true; }; pulsedSilac = derive2 { name="pulsedSilac"; version="1.9.1"; sha256="1zb8xzs9h4rcrnmsfvrwb1qixn3jbnzxdwqgdrb82hgmxabmajlb"; depends=[cowplot ggplot2 ggridges MuMIn R_utils robustbase S4Vectors SummarizedExperiment UpSetR]; broken = true; }; + pwrEWAS = derive2 { name="pwrEWAS"; version="1.14.0"; sha256="1913h2syad9mfspxjvmrwm0mrcklbcl89lj04rn5x0xgfk8rk58a"; depends=[abind BiocManager CpGassoc doParallel doSNOW foreach genefilter ggplot2 limma pwrEWAS_data shiny shinyBS shinyWidgets truncnorm]; broken = true; }; qrqc = derive2 { name="qrqc"; version="1.52.0"; sha256="0411477y7nazlwbz3pfszr1wfas6qd0g0iz0p9pmq16dw8pzkgg6"; depends=[Biostrings biovizBase brew ggplot2 plyr reshape Rhtslib testthat xtable]; broken = true; }; rama = derive2 { name="rama"; version="1.72.0"; sha256="0i6crxnzhwxnc55xh2rv36jfwh4bd30alw1f05ixdrxwqwsslbpy"; depends=[]; broken = true; }; - riboSeqR = derive2 { name="riboSeqR"; version="1.32.0"; sha256="0la8kmxxh5jnqsrmmvyhi313bjdbqkiq16hcxar6mgyjhxlsm610"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools seqLogo]; broken = true; }; + savR = derive2 { name="savR"; version="1.37.0"; sha256="13wiw7isdmpwhynxjrhimy9yglcz1108k7nwa98vq9czq49zpada"; depends=[ggplot2 gridExtra reshape2 scales XML]; broken = true; }; scAlign = derive2 { name="scAlign"; version="1.12.0"; sha256="1mlhxwsfrmhysa5mcyx7vf2jn49snf41yb7xqmyi40wilj9h8qlb"; depends=[FNN ggplot2 irlba purrr Rtsne Seurat SingleCellExperiment tensorflow]; broken = true; }; scClassifR = derive2 { name="scClassifR"; version="1.2.0"; sha256="0p9l9q5ina0axrqvqn1y5wkfqi0nacxm3nm6ny34j53znv07b2zz"; depends=[ape caret data_tree dplyr e1071 ggplot2 kernlab pROC ROCR Seurat SingleCellExperiment SummarizedExperiment]; broken = true; }; scMAGeCK = derive2 { name="scMAGeCK"; version="1.9.1"; sha256="1i6l8jxrd66aqk3m9212wsi8jqklvs0agsqrllvf9mrh16js4vby"; depends=[ggplot2 Seurat]; broken = true; }; - segmentSeq = derive2 { name="segmentSeq"; version="2.32.0"; sha256="059q1wr1sfpi7vh7lrkpfzjd8rz19ya837y7hack0i9icygwjmk3"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors ShortRead]; broken = true; }; sigPathway = derive2 { name="sigPathway"; version="1.66.2"; sha256="0k86hlz7zbbw7559bd2sl59pr441kihgwvg8nr75mj8d50n783sy"; depends=[]; broken = true; }; slinky = derive2 { name="slinky"; version="1.12.0"; sha256="05ywydvyz3jnzbhabhz1sd61hpy9nb22512zpbi48mv5wic1sv3v"; depends=[curl dplyr foreach httr jsonlite readr rhdf5 SummarizedExperiment tidyr]; broken = true; }; sojourner = derive2 { name="sojourner"; version="1.11.0"; sha256="1s0iqzn65s9g4yymy059z122i9wvgkcb5718snzxhj7mkqjzwhhc"; depends=[dplyr EBImage fitdistrplus ggplot2 gridExtra lattice MASS mclust minpack_lm mixtools mltools nls2 pixmap plyr R_matlab Rcpp reshape2 rlang scales shiny shinyjs sp truncnorm]; broken = true; }; - srnadiff = derive2 { name="srnadiff"; version="1.18.2"; sha256="0myh4pk2jbyr5ih8vycgw0vplgvpyar0xwcgr785xnpfjp8vj078"; depends=[baySeq BiocManager BiocParallel BiocStyle DESeq2 devtools edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Gviz IRanges Rcpp Rsamtools rtracklayer S4Vectors SummarizedExperiment]; broken = true; }; + sparseDOSSA = derive2 { name="sparseDOSSA"; version="1.24.0"; sha256="1xy9kd5a9vilwkgr4xw6lcdwgwykg7q7kildpfw4gqymd1frnjp6"; depends=[MASS MCMCpack optparse tmvtnorm]; broken = true; }; + sscore = derive2 { name="sscore"; version="1.72.0"; sha256="02y684iaryms7099k9idrvw0my52jj3d4hl949ai1jknaa19hmil"; depends=[affy affyio]; broken = true; }; tofsims = derive2 { name="tofsims"; version="1.22.0"; sha256="0da4843wbcr821yp8z3z4vd81qpm2lblckgd01fm89lmwj393z65"; depends=[ALS alsace KernSmooth ProtGenerics Rcpp RcppArmadillo signal]; broken = true; }; + trena = derive2 { name="trena"; version="1.22.2"; sha256="1xjhqm2g53kgcnnqhs5l3vn525h7amaz4hvsskjp5zb0gkfpiwh1"; depends=[AnnotationDbi biomaRt Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 DBI GenomicRanges glmnet lassopv MotifDb org_Hs_eg_db randomForest RMySQL RPostgreSQL RSQLite SNPlocs_Hsapiens_dbSNP150_GRCh38 WGCNA xgboost]; broken = true; }; + tscR = derive2 { name="tscR"; version="1.11.0"; sha256="19jpmyb6dly7l0418c1z0dlb936wjh6nwkb0mvk13ym19qgv1my7"; depends=[class cluster dplyr dtw GenomicRanges ggplot2 gridExtra IRanges knitr latex2exp prettydoc RColorBrewer rmarkdown S4Vectors SummarizedExperiment]; broken = true; }; tspair = derive2 { name="tspair"; version="1.53.0"; sha256="04xxrm313mnknhc38vl1sx6hic2g1x1xaa5772qlc7ip957hz85k"; depends=[Biobase]; broken = true; }; } diff --git a/pkgs/development/r-modules/cran-packages.nix b/pkgs/development/r-modules/cran-packages.nix index 1f4caabe42139..6fba505f80929 100644 --- a/pkgs/development/r-modules/cran-packages.nix +++ b/pkgs/development/r-modules/cran-packages.nix @@ -26,13 +26,13 @@ in with self; { ACEt = derive2 { name="ACEt"; version="1.9.0"; sha256="1071d75sw5bcfw1acjsg6bn81sapb5hkwrxjfrfxlz5r83w6213f"; depends=[BH MASS Rcpp RcppArmadillo]; }; ACNE = derive2 { name="ACNE"; version="0.9.0"; sha256="1mkm5pa7cf3qhzcvaf3775mvsi3r0rgpm0ndpiikmjpcmrv5rd2z"; depends=[aroma_affymetrix aroma_core MASS matrixStats R_filesets R_methodsS3 R_oo R_utils]; }; ACSWR = derive2 { name="ACSWR"; version="1.0"; sha256="195vjrkang5cl7gwsna0aq4p0h4jym9xg9yh94bnf8vq6wf8j83n"; depends=[MASS]; }; - ACTCD = derive2 { name="ACTCD"; version="1.2-0"; sha256="0mzjxxr2zfdidw8ibh6w8mvpkw3q3nvngqi05g9ind26ckvk053p"; depends=[GDINA R_methodsS3]; }; + ACTCD = derive2 { name="ACTCD"; version="1.3-0"; sha256="1a0gsznca5fv7i29xpcns4rkas5q88wv01rxvd4j66n64gw0ri4j"; depends=[GDINA R_methodsS3]; }; ACV = derive2 { name="ACV"; version="1.0.2"; sha256="078n1if2rkbdhivrzp3lsq35a8awrf5y3s7fi3f5l21a9dmrk4d1"; depends=[forecast Matrix]; }; ACWR = derive2 { name="ACWR"; version="0.1.0"; sha256="19q8m5swp7ivrxi8rbkpp37d6fwr35zd8xs4ygpfgd07axc9451s"; depends=[r2d3]; }; ADAPTS = derive2 { name="ADAPTS"; version="1.0.22"; sha256="0hsignjfq2kbsygpip0fkbncjil8lxryhlhavin09x4xb41kbsva"; depends=[ComICS doParallel e1071 foreach missForest nnls pcaMethods pheatmap preprocessCore quantmod ranger]; }; ADCT = derive2 { name="ADCT"; version="0.1.0"; sha256="1glf83ydx4v3ld8c4gb9h3jk6srd054bis5l8k57p1ba4fnqnnpp"; depends=[mvtnorm]; }; ADDT = derive2 { name="ADDT"; version="2.0"; sha256="044bb1jw2m8vwk5q8l7rlz4kqphjvy8i9d59rjg0k5q5l9vczfrp"; depends=[coneproj Matrix nlme]; }; - ADER = derive2 { name="ADER"; version="1.4"; sha256="0ada3b0ykbg1pdqj8i3ir5ldzb2prf3bhwm2mpln14h19hxc6i35"; depends=[]; }; + ADER = derive2 { name="ADER"; version="1.5"; sha256="1zby06fw171inlri2k0k4n5lggsr9zxzad2pv08882md1klqwkpw"; depends=[]; }; ADGofTest = derive2 { name="ADGofTest"; version="0.3"; sha256="0ik817qzqp6kfbckjp1z7srlma0w6z2zcwykh0jdiv7nahwk3ncw"; depends=[]; }; ADMM = derive2 { name="ADMM"; version="0.3.3"; sha256="04biinzr0x3jkwss00q6zxfnzk62dafc6386z5vfqs4ch0ifh60n"; depends=[doParallel foreach Matrix Rcpp RcppArmadillo Rdpack]; }; ADMMsigma = derive2 { name="ADMMsigma"; version="2.1"; sha256="1943dza086s22pr0yz41wzn9cdg11x7fl9zr3w012865yj219m7l"; depends=[doParallel dplyr foreach ggplot2 Rcpp RcppArmadillo RcppProgress]; }; @@ -40,6 +40,7 @@ in with self; { ADP = derive2 { name="ADP"; version="0.1.6"; sha256="1ljm4bri3b96r544x3n37qrfm6krmij8yjfr8n5acllqp6jnf2d5"; depends=[]; }; ADPF = derive2 { name="ADPF"; version="0.0.1"; sha256="1n7302xx77ngvp9i2h582i1mqslzllcdr0bn3pl2zk9jd8k97p7n"; depends=[]; }; ADPclust = derive2 { name="ADPclust"; version="0.7"; sha256="0s47cpsjykn7imsssa9w9b6g9d1sz2yah78yqzxmh0i3lqd757c1"; depends=[cluster dplyr fields knitr]; }; + ADTSA = derive2 { name="ADTSA"; version="1.0.1"; sha256="1qaxb7xja7zqdz5pwy5ad8jah3cvqpial2isjwqndhlmsvfysl5n"; depends=[]; }; ADVICE = derive2 { name="ADVICE"; version="1.0"; sha256="1p8186715lzk4prxaw5v0np9z1zfj9zbp124jrch0yygvkxksy7r"; depends=[]; }; AEDForecasting = derive2 { name="AEDForecasting"; version="0.20.0"; sha256="16q2sn5zzvysyy3r32jnr21pbdkkn0k0sbarni6fdkx7pj27yijn"; depends=[changepoint forecast signal]; }; AEP = derive2 { name="AEP"; version="0.1.4"; sha256="15b48vbl36b6wmjszm28p0mawg5kwsjglbrb8cndf3zsvx95zdq1"; depends=[]; }; @@ -48,7 +49,7 @@ in with self; { AF = derive2 { name="AF"; version="0.1.5"; sha256="1r87ra55g0qm2s8cgsmdwck93ia2vr8zfab3in45mxm5xc501xgk"; depends=[data_table drgee ivtools stdReg survival]; }; AFFECT = derive2 { name="AFFECT"; version="0.1.2"; sha256="0ri0wllf87nxma9i51j89yd4yhkgjnjj5kls3768bi0h9wlyvxmp"; depends=[ggplot2]; }; AFM = derive2 { name="AFM"; version="2.0"; sha256="1l0yd68h8vlii1437zhyrxj6fq1ghfaqclk860c25q2d055ajnqd"; depends=[data_table dbscan fftwtools fractaldim ggplot2 gridExtra gstat igraph mixtools moments plyr png pracma rgl scales shiny shinyjs sp stringr]; }; - AFR = derive2 { name="AFR"; version="0.3.4"; sha256="07s32s5vdpg3gxp7ixr4gx0hx66jadiqm2x4mp1f2b2njan2z31h"; depends=[car cli forecast ggplot2 goftest gridExtra lmtest mFilter nlme nortest olsrr regclass rlang tseries writexl xts zoo]; }; + AFR = derive2 { name="AFR"; version="0.3.5"; sha256="0ismghsl2qi2q81c5ipgdxs6s6rw3kk8sz9yx16g6scnbyisa41y"; depends=[car cli forecast ggplot2 goftest gridExtra lmtest nlme nortest olsrr rlang tseries xts zoo]; }; AFheritability = derive2 { name="AFheritability"; version="0.1.0"; sha256="03w0a4z2x539ykyzdxm1mfqkhzz03cg0aqvgi062jrrm5m6f57ix"; depends=[ggplot2 mvtnorm reshape2 shiny]; }; AGD = derive2 { name="AGD"; version="0.39"; sha256="0hmq684snnffc2v7vmns4ky200a6zh1ggiap03n5cvpb3nlqc6lr"; depends=[gamlss gamlss_dist]; }; AGHmatrix = derive2 { name="AGHmatrix"; version="2.1.4"; sha256="1ji022h11ijfjicbvc5hgxpf6rfs7mm07nxrjlk7lrl699gi1xh2"; depends=[Matrix zoo]; }; @@ -58,12 +59,13 @@ in with self; { AHPGaussian = derive2 { name="AHPGaussian"; version="0.1.1"; sha256="12sfh4nn4aj3jdga47dcwzf0qvhydgh56kv5kqmwg0bxw7g5r9z7"; depends=[reshape2]; }; AHPWR = derive2 { name="AHPWR"; version="0.1.0"; sha256="1g7d1vbjxb232fk6wjah73kjm6pj81acls8wqssphgnfiffgrrq6"; depends=[dplyr formattable ggplot2 igraph magrittr readxl tibble tidyr xlsx]; }; AHPhybrid = derive2 { name="AHPhybrid"; version="0.1.0"; sha256="1hf2ba52nim13jwkq857vnmnnb1yhgdz6kipqg3mmqrgz7kg52v1"; depends=[]; }; - AHPtools = derive2 { name="AHPtools"; version="0.2.0"; sha256="0fdmihxd04bsan0kpplggqh1f409n59k5lx26ld2qcbxplq0lp9w"; depends=[]; }; + AHPtools = derive2 { name="AHPtools"; version="0.2.1"; sha256="1bmk7mcg3ma0d4a3gy5s3zkkw49nfbg6rh5ji9qvi99rj6ksfcry"; depends=[]; }; AHSurv = derive2 { name="AHSurv"; version="0.1.0"; sha256="051q6iamqhhkrq7bfhq40n9svd4wfqyxscgwfnsflqdmbgm6gghs"; depends=[flexsurv rootSolve]; }; AICcPermanova = derive2 { name="AICcPermanova"; version="0.0.2"; sha256="0sq3lnyrja2vpl5wqq517zw32fi96x99gqxj9lh8q3b0napkb0fd"; depends=[broom car data_table doParallel dplyr foreach furrr future stringr tidyr vegan]; }; - AICcmodavg = derive2 { name="AICcmodavg"; version="2.3-2"; sha256="0lzk6xq6pfb7jxk61vlkcl60k4g9vqrdxdq19lc1ihjq13dmx7l9"; depends=[lattice MASS Matrix nlme survival unmarked VGAM xtable]; }; + AICcmodavg = derive2 { name="AICcmodavg"; version="2.3-3"; sha256="0ylzd6fz5p86fdb8yily2v8bn8xz5mm6w19ch6gpp48jzkqvama0"; depends=[lattice MASS Matrix nlme survival unmarked VGAM xtable]; }; AID = derive2 { name="AID"; version="2.9"; sha256="0s7020vh93rnyhcfsmsn1swffrbg1fx3pqq2bd043m4b90yrlzpc"; depends=[ggplot2 MASS meta nortest psych stringr tseries]; }; AIPW = derive2 { name="AIPW"; version="0.6.3.2"; sha256="1iqq665qigw9dmc62x2dz1nvrk8s65ph0a3k2p7mkznr9frshhi2"; depends=[future_apply ggplot2 progressr R6 Rsolnp SuperLearner]; }; + AIUQ = derive2 { name="AIUQ"; version="0.5.0"; sha256="12nb5zgq62qx5am0q26xjr6hfpjzqh0s1sd02alxkd4c6dmbsjsq"; depends=[fftwtools plot3D SuperGauss]; }; ALDqr = derive2 { name="ALDqr"; version="1.0"; sha256="0gk8hxh4p0fi47sf1zsvvxxbzp38vzk60wh8hmc63phnjab6qkv4"; depends=[HyperbolicDist sn]; }; ALEPlot = derive2 { name="ALEPlot"; version="1.1"; sha256="0bakl8a7xda7vh9zsc66kkd5w5jmb5j28kfwpfq2ifvk2mrakr3w"; depends=[yaImpute]; }; ALS = derive2 { name="ALS"; version="0.0.7"; sha256="184d6xr4mgs78jvi7xa4njrq6p625i9sx69wak6mdn53qpl9b8ap"; depends=[Iso nnls]; }; @@ -80,17 +82,18 @@ in with self; { AMPLE = derive2 { name="AMPLE"; version="1.0.2"; sha256="019r60rcx3biyicmyc4i1806d31i2hp107ba2l0mgh08fx3lfwhj"; depends=[ggplot2 markdown R6 RColorBrewer scales shiny shinyjs shinyscreenshot]; }; AMR = derive2 { name="AMR"; version="2.1.1"; sha256="0dgql8s7jzk3cmjnvn09rsymz1zwzk2983rvcccl5z00x9d7yg7k"; depends=[]; }; ANN2 = derive2 { name="ANN2"; version="2.3.4"; sha256="1izljhz3rkzq05dkvg9q3fdyj7q871j8lsky67d5r8ffpzm1lk3z"; depends=[ggplot2 Rcpp RcppArmadillo reshape2 testthat viridisLite]; }; + ANOFA = derive2 { name="ANOFA"; version="0.1.3"; sha256="1ywcn4sq626dc3bb7r3pwddw5064cli4kmx8a9qp2dnxv9i6igjv"; depends=[ggplot2 Rdpack rrapply superb]; }; ANOM = derive2 { name="ANOM"; version="0.5"; sha256="14nfy9xplbabfprwxz5fvx26nmqhp657vr6d90dc8vk8ds63ckiz"; depends=[ggplot2 MCPAN multcomp nparcomp SimComp]; }; ANOVAIREVA = derive2 { name="ANOVAIREVA"; version="0.1.0"; sha256="04z2g79nnh5yhn4aqw0i7ck2b1z5dbasf1zp1sj6rjjrp9aqmaa6"; depends=[car dplyr ggplot2 plotly rmarkdown shiny]; }; ANOVAShiny = derive2 { name="ANOVAShiny"; version="0.1.0"; sha256="1z8wi8c8j3rlchfk1vx101qz1r9j2jl5lfh72y5lqsisqxl2fyyz"; depends=[DescTools dplyr HH rhandsontable rmarkdown shiny]; }; ANOVAShiny2 = derive2 { name="ANOVAShiny2"; version="0.1.0"; sha256="0bnxfg5c37wi5g53jd0zqq31yx29zvlk2m2jh6jlwki8khpp9y00"; depends=[DescTools dplyr HH rhandsontable rmarkdown shiny]; }; AOV1R = derive2 { name="AOV1R"; version="0.1.0"; sha256="0dv7k0mifybkarpwqyla5j6cvw9dcch09wvdq09ra9bsf4vyk652"; depends=[cellranger data_table lazyeval purrr]; }; APCI = derive2 { name="APCI"; version="1.0.6"; sha256="0lfbx067vqh2yn15jmiicva8h38k0vgdr3s6m2jgswfbp11a8pjh"; depends=[data_table dplyr gee ggplot2 ggpubr magrittr stringr survey]; }; - APCalign = derive2 { name="APCalign"; version="0.1.2"; sha256="0r1zn629dcaa2fwnh0a26yjgamnz9agsy39frzv1lc3yw5r44m66"; depends=[arrow contentid crayon dplyr forcats gh purrr readr stringi stringr tibble]; }; + APCalign = derive2 { name="APCalign"; version="0.1.3"; sha256="1kbkwpf7lzg7lznl0ysnwwilmklqyqd02qc1vl0pfbd407pqlyyv"; depends=[arrow crayon curl dplyr forcats httr jsonlite purrr readr rlang stringi stringr tibble]; }; APCanalysis = derive2 { name="APCanalysis"; version="1.0"; sha256="11snn5i8zyjpzf58ica762fpp14v7x5h8a8iwx4s4v81pgvlx862"; depends=[]; }; APCtools = derive2 { name="APCtools"; version="1.0.4"; sha256="0xp90p7q3a33cqsyh6n2gcsfnq9gchm5vcl13s72gqyfx4jjcnv7"; depends=[checkmate colorspace dplyr ggplot2 ggpubr knitr mgcv scales stringr tidyr]; }; APFr = derive2 { name="APFr"; version="1.0.2"; sha256="1vax7rfccds6qz3bi6n1h3nzl9jnxpwk331wmpsbqlk23md3m4g4"; depends=[]; }; - APIS = derive2 { name="APIS"; version="2.0.2"; sha256="1rqj15h6cyqhs7p3b4xa16jykxhv6ms37xi0b03wldmg9f02h8la"; depends=[cowplot data_table doParallel dplyr DT foreach ggplot2 gridExtra htmltools plotly rlang shiny shinyBS shinythemes]; }; + APIS = derive2 { name="APIS"; version="2.0.4"; sha256="02s7cpzsp53wk3k4cm6l3hpkc3f191zhg22vwbf8va7dni3d24rq"; depends=[cowplot data_table doParallel dplyr DT foreach ggplot2 gridExtra htmltools plotly rlang shiny shinyBS shinythemes]; }; APML0 = derive2 { name="APML0"; version="0.10"; sha256="1l6mw1mqb7qnsvfv9w6yydqjsrwrsrqx3bpifyp43cf2q71yx5gp"; depends=[Matrix Rcpp RcppEigen]; }; APPEstimation = derive2 { name="APPEstimation"; version="0.1.1"; sha256="1bg9ma4i3k3xdgyk2h4f368gqnczvlhvjw4114iznmrv1wl4g25c"; depends=[densratio]; }; APtools = derive2 { name="APtools"; version="6.8.8"; sha256="171aydyd7s8qll7djl4ysy596wxdf5wfwpqwfi14jjglc9r9qrrr"; depends=[cmprsk survival]; }; @@ -100,7 +103,9 @@ in with self; { AR = derive2 { name="AR"; version="1.1"; sha256="1wn4g2997c4vc3mzq2pv8ld0ryp0i78v4zlqqryvhshxgnz4f2pr"; depends=[DISTRIB]; }; ARCensReg = derive2 { name="ARCensReg"; version="3.0.1"; sha256="0qrzxa93cj1ql4iw93ksk58ycfgmncry7q29axhydwh9hsh3lyms"; depends=[ggplot2 gridExtra matrixcalc msm mvtnorm numDeriv qqplotr Rcpp RcppArmadillo Rdpack tmvtnorm]; }; ARCokrig = derive2 { name="ARCokrig"; version="0.1.2"; sha256="0pk0y0gsw681py0vwizxvh1jqjnapzqfr0mbdpli1sray55xbjr2"; depends=[ggplot2 mvtnorm Rcpp RcppArmadillo RcppEigen]; }; + ARDECO = derive2 { name="ARDECO"; version="0.1.1"; sha256="0dw3806ps7yxf193mpvps47s1q9789z3z072ds2ahblnnaci2n74"; depends=[dplyr ghql httr jsonlite rjstat]; }; ARDL = derive2 { name="ARDL"; version="0.2.4"; sha256="02yimcsbw8fgv0qslxp3f38k6wzaxwmp0f8f0k0nxx5bnlkc9c4c"; depends=[aod dplyr dynlm ggplot2 gridExtra lmtest msm stringr zoo]; }; + ARGOS = derive2 { name="ARGOS"; version="0.1.0"; sha256="0bp0gqlcsi57zzqgcj337jdhqvpcn6kjk1q8axdcyz3g1lkpbyd1"; depends=[boot deSolve glmnet magrittr Matrix Metrics signal tidyr tidyverse]; }; ARHT = derive2 { name="ARHT"; version="0.1.0"; sha256="1fz81a202r8vk655dg6a03zfq3gfkimqjvmc95k3j02xz0iv58kn"; depends=[]; }; ARIMAANN = derive2 { name="ARIMAANN"; version="0.1.0"; sha256="0n4n9srl56s6pxjib43ksb9rahmsb509sfvpjk4py8m4r01ab2m2"; depends=[forecast tseries]; }; ARIbrain = derive2 { name="ARIbrain"; version="0.2"; sha256="18c7yxkrnqh18gcfzvdc5wqig6ywdmjcy8rlz0fdj3b8fb84dfpr"; depends=[hommel plyr RNifti]; }; @@ -111,8 +116,8 @@ in with self; { ARTofR = derive2 { name="ARTofR"; version="0.4.1"; sha256="1dw9aascnqr5cbk8a862rlma94b39ndgkrhf826qf4k58y92nf5q"; depends=[bannerCommenter clipr rstudioapi shiny]; }; ARTool = derive2 { name="ARTool"; version="0.11.1"; sha256="16awxcncyhry0ygk8gdvlff787837rr8qsyg1pxd11w4v1llrqrf"; depends=[car dplyr emmeans lme4 magrittr plyr]; }; ARpLMEC = derive2 { name="ARpLMEC"; version="2.4.1"; sha256="1d6gvgbnj19dislzjlxn7i0iq7h56zz7hm9x5l865ji790b9smqw"; depends=[expm LaplacesDemon MASS mnormt numDeriv relliptical TruncatedNormal]; }; - ASGS_foyer = derive2 { name="ASGS.foyer"; version="0.3.1"; sha256="089c4vm629rni0dfgg3r2a9s9yisdx1qs2dwssg44qw1w4hf1f50"; depends=[sp]; }; - ASMap = derive2 { name="ASMap"; version="1.0-6"; sha256="0l48frd7qik70zw4qrs0kw9rz4gqb9lr1sa8kxzhfbsxjkildrxl"; depends=[fields gtools lattice qtl RColorBrewer]; }; + ASGS_foyer = derive2 { name="ASGS.foyer"; version="0.3.3"; sha256="1zvps8d20ig863dv3jm1pjj9icy88dk378a9j8f0gcgafz5cxi6g"; depends=[sp]; }; + ASMap = derive2 { name="ASMap"; version="1.0-7"; sha256="04byjdz3dzgf06bmmpvslihya23lanl8dmjbq22vvwlhi82f88im"; depends=[fields gtools lattice qtl RColorBrewer]; }; ASRgenomics = derive2 { name="ASRgenomics"; version="1.1.3"; sha256="1yl3q1fjfyl0v0wpbgnbh8zj5j8zi1imf19cj66fdvji3i4c4lsi"; depends=[AGHmatrix cowplot crayon data_table ellipse factoextra ggplot2 Matrix scattermore superheat]; }; ASSA = derive2 { name="ASSA"; version="2.0"; sha256="10r5406g6i0959k1zm5h9cbwqmnyf7zy80ahiqsyrapm3g5rphxg"; depends=[]; }; ASSISTant = derive2 { name="ASSISTant"; version="1.4.3"; sha256="0apaj4lfkbg08xrw8mknf50s1vyd4j5mbwciwgblq7ydh3pyjxaj"; depends=[dplyr knitr magrittr mvtnorm R6]; }; @@ -124,21 +129,22 @@ in with self; { ATbounds = derive2 { name="ATbounds"; version="0.1.0"; sha256="007gc9yjxwlhkb0mibxaa394xdiilfm8z6jbbqdn6wl986p07pg3"; depends=[mgcv]; }; AUC = derive2 { name="AUC"; version="0.3.2"; sha256="07xf47kypqbsg2mixmq6mnh4s89aqan9bgl6kfv6lbx8ajv2asw3"; depends=[]; }; AUtests = derive2 { name="AUtests"; version="0.99"; sha256="0ima350mjlqvij6f9xy6wfcibvlji7nh0prpqngj7apn82ri4m2k"; depends=[logistf]; }; + AVGAS = derive2 { name="AVGAS"; version="0.1.0"; sha256="0s0h6rpsni73a0j679g22ngpaazdfifxpi7mwpa7ac3p0kdzvji0"; depends=[dplyr ggplot2 Matrix pracma selectiveInference VariableScreening]; }; AWR = derive2 { name="AWR"; version="1.11.189-1"; sha256="1imvpmq6br0z7l67w66a5s1ylbv6xvypj0wc09bmjy7sapdmkn4x"; depends=[rJava]; }; AWR_Kinesis = derive2 { name="AWR.Kinesis"; version="1.7.6"; sha256="0ak2ry5zj6gb9g6laabv0ym3i1vqdwl56g6k58fkpjb87rlb2hbp"; depends=[AWR jsonlite logger rJava]; }; AZIAD = derive2 { name="AZIAD"; version="0.0.2"; sha256="0w5s367zkf857hzs1lczjgnd8ydnam8k5fwf155drxxdr5c3gm2z"; depends=[corpcor doParallel dplyr EnvStats extraDistr foreach lqmm matrixcalc MixAll QRM rmutil rootSolve]; }; AalenJohansen = derive2 { name="AalenJohansen"; version="1.0"; sha256="0w7fj7l2pyz2y1dywpkdxb9qc4v89d57l4ddnjraxsfppk5ga3i4"; depends=[]; }; Ac3net = derive2 { name="Ac3net"; version="1.2.2"; sha256="1ns4n0xxz6p34c11bj0k7nzgmyqr9mis2b0g5nfz37dbikndyqyz"; depends=[data_table]; }; AcademicThemes = derive2 { name="AcademicThemes"; version="0.0.1"; sha256="04c9hshsq1wq5v6005zhmnp2sgy06fxxxb7gnxpvvmslnq644sb2"; depends=[ggplot2]; }; - AcceptanceSampling = derive2 { name="AcceptanceSampling"; version="1.0-8"; sha256="1ja1g0v8qvf7yj81x37wc6i7fkwpc573756jgvazazi8yf1gm12p"; depends=[]; }; + AccelStab = derive2 { name="AccelStab"; version="1.0.0"; sha256="0bjbxnbi809hf57inf09y0635917spw1l0mmpjx89ncrvngvzkxx"; depends=[dplyr ggplot2 minpack_lm mvtnorm]; }; + AcceptanceSampling = derive2 { name="AcceptanceSampling"; version="1.0-10"; sha256="1sbv2yrvnn0zgdmqvjlmz2vllsg6r9nlmxdgadhymhm9s51gfx65"; depends=[]; }; Achilles = derive2 { name="Achilles"; version="1.7.2"; sha256="1xkhplw7jpz7y86nac2z5vk2xs898kfv6apmk3rahjr0rmdijdqg"; depends=[data_table DatabaseConnector dplyr jsonlite lubridate ParallelLogger readr rlang SqlRender tseries]; }; AcousticNDLCodeR = derive2 { name="AcousticNDLCodeR"; version="1.0.2"; sha256="1fgzgwanpv2pzy74xdk3hamc44p8qch467wh163dxby8jr9ik0sb"; depends=[seewave tuneR zoo]; }; AcrossTic = derive2 { name="AcrossTic"; version="1.0-3"; sha256="03180h79jhjd66ibrnsfp3yyp2jlfysp7cymw46phzj2palghsc0"; depends=[lpSolve treeClust]; }; ActCR = derive2 { name="ActCR"; version="0.3.0"; sha256="1w3xkq3wanpa2j3rfzzdvad2r3vzzvp76kp56mh2s07p3xql6rv0"; depends=[cosinor cosinor2 dplyr minpack_lm zoo]; }; ActFrag = derive2 { name="ActFrag"; version="0.1.1"; sha256="08r3gwjz4fkyy85dxqix0ffm5xyq45032qv3snnzxnlqxslxbqn1"; depends=[accelerometry dplyr ineq survival tidyr]; }; ActiveDriver = derive2 { name="ActiveDriver"; version="1.0.0"; sha256="10c7ga48fwvpd5mc4dqiyw4kc2l0iz5qn4hg7xk15r1qmm5rsipa"; depends=[MASS]; }; - ActiveDriverWGS = derive2 { name="ActiveDriverWGS"; version="1.2.0"; sha256="0xnplgwxd197a4d422bsxg753q158i12ils16awd1cw30wafdxkk"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - ActivePathways = derive2 { name="ActivePathways"; version="2.0.2"; sha256="1h0ih87pf6b5mdhmh65frv3nqx7v5adqv37wn2p3gkpszd6hwc79"; depends=[data_table ggplot2]; }; + ActivePathways = derive2 { name="ActivePathways"; version="2.0.3"; sha256="0mgvxpqaq0jncr1kzmwhqkv3pajx2fz6vwhv5arw7fgla6w09p9h"; depends=[data_table ggplot2]; }; ActivityIndex = derive2 { name="ActivityIndex"; version="0.3.7"; sha256="1zj2b6x31a1kxl80rarmkrlm7ack4154mrkbqs3fpi48zpmjbgd5"; depends=[data_table matrixStats R_utils]; }; ActuarialM = derive2 { name="ActuarialM"; version="0.1.0"; sha256="1545jmbbisw5fxk07xl86jw7sw4kysa2crjm57mq2qk4qg9hh5rb"; depends=[]; }; AcuityView = derive2 { name="AcuityView"; version="0.1"; sha256="0f0iclmnwdc8ixiiai4svk4x1g3pjy7dhm3cm58fv6ckx12d3d2l"; depends=[fftwtools imager plotrix]; }; @@ -167,10 +173,11 @@ in with self; { AlgebraicHaploPackage = derive2 { name="AlgebraicHaploPackage"; version="1.2"; sha256="1krm5cx609sv2p0g3xm5jaiqs9li06v717lw7ywjvx7myc9x4c07"; depends=[]; }; AllMetrics = derive2 { name="AllMetrics"; version="0.2.0"; sha256="1sx58yqdmwnnzi9y0jirnxmddxqffglnqz7n276sl0sgps79j7yj"; depends=[]; }; AlleleRetain = derive2 { name="AlleleRetain"; version="2.0.2"; sha256="0b6h5giskqbjbrk8nf29i75wrhxsjw1c87laiqzrpbp9n717bl20"; depends=[]; }; + AlleleShift = derive2 { name="AlleleShift"; version="1.1-2"; sha256="1lv7ap40bc6l1wp68lbxyavl9dky1mz09zbdjg9kyf1b9ca5siqx"; depends=[adegenet BiodiversityR vegan]; }; AllelicSeries = derive2 { name="AllelicSeries"; version="0.0.4.1"; sha256="1i9p2hzi61mvl5gxcs7rlavcl70pvjscnqjlxms35n4ziq3hzrk0"; depends=[Rcpp RcppArmadillo RNOmni SKAT]; }; Allspice = derive2 { name="Allspice"; version="1.0.7"; sha256="1a5wxs2fbpfk3032h70z86zzrzjjkp00c06dh7g2jmqc5irp6n2a"; depends=[]; }; AlphaPart = derive2 { name="AlphaPart"; version="0.9.8"; sha256="1ih76v3kgnladqq3nvlqrz5sqkg1j97m778kchz6k05cjxhj8l4q"; depends=[directlabels dplyr ggplot2 magrittr pedigree Rcpp reshape tibble]; }; - AlphaSimR = derive2 { name="AlphaSimR"; version="1.4.2"; sha256="0qbb5wdwprjr21nh1khnzaspvg96hqynh277gjkryrwpc8nak16s"; depends=[BH R6 Rcpp RcppArmadillo Rdpack]; }; + AlphaSimR = derive2 { name="AlphaSimR"; version="1.5.3"; sha256="1qv3bfn4xnpkiblzdig1zn3cli5g1h2binnsi4znxzd6z1406sq9"; depends=[BH R6 Rcpp RcppArmadillo Rdpack]; }; AlteredPQR = derive2 { name="AlteredPQR"; version="0.1.0"; sha256="15zszn49c2a3lad2fzfj2yblyafbrhn6j3j1dcjbcz0fxgf6cmhw"; depends=[]; }; Amelia = derive2 { name="Amelia"; version="1.8.1"; sha256="1r27zjlr8ld932lr6dn79cravss17gry6p0mxgdlbj6g58mfc30j"; depends=[foreign Rcpp RcppArmadillo rlang]; }; AmericanCallOpt = derive2 { name="AmericanCallOpt"; version="0.95"; sha256="1nhy44j5bmmjsp6g79nrn741rzzxikhdnxk4wwbdj9igcc1bs573"; depends=[]; }; @@ -183,10 +190,10 @@ in with self; { AmyloGram = derive2 { name="AmyloGram"; version="1.1"; sha256="1xdi3i3nw4fzj4d040r55f0gid72gy3vbz5nbdrvapl97zk3kp8c"; depends=[biogram ranger seqinr shiny]; }; AnaCoDa = derive2 { name="AnaCoDa"; version="0.1.4.4"; sha256="1b03bxysvw9v4j3bzsmrjf5ci06v6s83ix89qxy73ba5akf2gb7h"; depends=[mvtnorm Rcpp VGAM]; }; Anaconda = derive2 { name="Anaconda"; version="0.1.5"; sha256="02ars06pmg0f0biy022yz2xf0sdmww9ff9zcpl74gah3sickq9ci"; depends=[ape data_table DESeq2 ggplot2 ggrepel lookup pheatmap plyr rafalib RColorBrewer]; }; - AnanseSeurat = derive2 { name="AnanseSeurat"; version="1.1.0"; sha256="0f487qbn8a3hghpa0ly2kn5cb7s9wjb5f59f6zkrpgx4rwhjvfgp"; depends=[dplyr ggplot2 ggpubr magrittr patchwork png purrr rlang Seurat stringr]; }; + AnanseSeurat = derive2 { name="AnanseSeurat"; version="1.2.0"; sha256="12r6bxh0cvh94nb91lzdj7sa7na1ljc5gdmdfx6dwilhpdafn0a3"; depends=[dplyr ggplot2 ggpubr magrittr patchwork png purrr rlang Seurat stringr]; }; AncestryMapper = derive2 { name="AncestryMapper"; version="2.0"; sha256="1fr2y1a5rn7rq8aly94f618kywix32jwysi70nfhaqx8hf4zzprb"; depends=[svd]; }; AnchorRegression = derive2 { name="AnchorRegression"; version="0.1.3"; sha256="1bmlxk5j3i9mm71cwz785q5sysp8hsyy0080kgd3ksx78p68ara5"; depends=[glmnet mgcv selectiveInference]; }; - Andromeda = derive2 { name="Andromeda"; version="0.6.3"; sha256="0ckmrys46haa4j8hjkizw94i8zhljd1zzm3crfq01s8l1jpnxzir"; depends=[cli DBI dbplyr dplyr hms pillar rlang RSQLite tidyselect zip]; }; + Andromeda = derive2 { name="Andromeda"; version="0.6.4"; sha256="0z4ajmgahgf07rr0z884i57lbr7miygapzknmjy7ibl317cl975y"; depends=[cli DBI dbplyr dplyr hms pillar rlang RSQLite tidyselect zip]; }; AnglerCreelSurveySimulation = derive2 { name="AnglerCreelSurveySimulation"; version="1.0.2"; sha256="1nhd0i30g5wb5jh96gfaa0lgnbnj0m2vy4gz7v2c3142396zalnx"; depends=[dplyr ggplot2]; }; AnimalHabitatNetwork = derive2 { name="AnimalHabitatNetwork"; version="0.1.0"; sha256="1bhqypkiw5v9w26jbdmhndqj5hjfmf7zwivrq2hgs0zcjxwa8gfn"; depends=[ggplot2 igraph]; }; AnnoProbe = derive2 { name="AnnoProbe"; version="0.1.7"; sha256="0715bpifj8r4ji0m89wk4x7vd3pwx8kqy9vs8m0ivmq7bb56nx0b"; depends=[Biobase curl DT ggplot2 ggpubr httr pheatmap xml2]; }; @@ -194,16 +201,18 @@ in with self; { AnnuityRIR = derive2 { name="AnnuityRIR"; version="1.0-0"; sha256="0yvfqzwhm5nhywfhzkxkfm07c0qi6z21j1cdaypz89qn567aj1d9"; depends=[actuar EnvStats fitdistrplus mc2d tseries]; }; AntAngioCOOL = derive2 { name="AntAngioCOOL"; version="1.2"; sha256="1krwms0y3xppc2y4m0az51wcbh4jq7mlr0jwinp66w8gh4k3qnp2"; depends=[caret rJava rpart RWeka]; }; AntMAN = derive2 { name="AntMAN"; version="1.1.0"; sha256="118jhjjfnp23kbkir66rdvlzsvms316zwr2r5msrjrb3nd8lz5va"; depends=[bayesplot GGally mcclust mvtnorm Rcpp RcppArmadillo Rdpack salso]; }; - AnthropMMD = derive2 { name="AnthropMMD"; version="4.0.2"; sha256="1k8f8xrlgl4l3kpspdpznplydq8ppynkjwij571sb4lkac5fbz55"; depends=[dplyr MASS plotrix rlang scatterplot3d shiny smacof]; }; + AnthropMMD = derive2 { name="AnthropMMD"; version="4.0.3"; sha256="03mvlw54a9xz7ggjbfi9yddzq1wv4skjvbv3r4bdrldpbd6scm0b"; depends=[dplyr MASS plotrix rlang scatterplot3d shiny smacof]; }; Anthropometry = derive2 { name="Anthropometry"; version="1.19"; sha256="0aj70wm37bd5i4gzajvs6lf3zg0bz3kkf4srrcslg6drqk6n5z5l"; depends=[archetypes biclust cluster ddalpha FNN ICGE nnls rgl shapes]; }; AntibodyTiters = derive2 { name="AntibodyTiters"; version="0.1.24"; sha256="1400n46kmaa074m6yilmkvcn83dyxk2w76x8cny1dygfzsnhhjxl"; depends=[DescTools openxlsx]; }; AnxietySleep = derive2 { name="AnxietySleep"; version="0.0.1"; sha256="07im2gjq62y3vgim9j0ar29qhmi7r79zbjdi024h04mxrwpic5z6"; depends=[data_table lifecycle]; }; Aoptbdtvc = derive2 { name="Aoptbdtvc"; version="0.0.2"; sha256="1bygvf8vgzz3wa4485x2xxpk784zmw1nwsjjjysm12brrldh8zzh"; depends=[lpSolve MASS]; }; AovBay = derive2 { name="AovBay"; version="0.1.0"; sha256="110y9wbqr0m9b6wr1c5mncrdjpg247308989bswkqnim2msvnzcf"; depends=[BayesFactor BH broom car dplyr DT highcharter htmltools moments nortest purrr Rcpp RcppEigen RcppParallel reshape rstan rstantools shiny shinycssloaders shinydashboard shinydashboardPlus StanHeaders stringr tibble waiter]; }; ApacheLogProcessor = derive2 { name="ApacheLogProcessor"; version="0.2.3"; sha256="0h4snigh1yhp34vw52h4b6qbh9c4cvwz2cx8fwvbnw6lslmg5cgv"; depends=[doParallel foreach stringr]; }; + Apollonius = derive2 { name="Apollonius"; version="1.0.1"; sha256="13iz0j2kc3jzzn77jawrm0fg23mqkxh7h7dasfjibmykamvw45nb"; depends=[abind BH colorsGen gyro plotrix Polychrome Rcpp RcppCGAL RcppEigen]; }; AppliedPredictiveModeling = derive2 { name="AppliedPredictiveModeling"; version="1.1-7"; sha256="1wi0sw5w1c51rmh9z98wdpk5rgzsylkkb6g019djiwxvj92l99hh"; depends=[CORElearn ellipse lattice MASS plyr reshape2]; }; AquaBEHER = derive2 { name="AquaBEHER"; version="0.1.0"; sha256="0rgkwy1sfdkcjk69cncxd2zxlkn9kyvq8iwmz83d2gwzdzfbjqdd"; depends=[dplyr ggplot2 lubridate raster sp]; }; AquaEnv = derive2 { name="AquaEnv"; version="1.0-4"; sha256="07yx7mbslqgqg7ky67n3xfhskaj7s3w5mvl7xkih48xbsdlmxi4l"; depends=[minpack_lm]; }; + AquaticLifeHistory = derive2 { name="AquaticLifeHistory"; version="1.0.5"; sha256="0h6q0ajw2k2f1p0k8j6772p7i78a13amwxzj4ffrykqgwi3pr22v"; depends=[broom dplyr ggplot2 magrittr MASS minpack_lm MuMIn plyr readr rlist tidyr]; }; ArArRedux = derive2 { name="ArArRedux"; version="1.0"; sha256="11h88gnj54cn5fbxf163s8kjqc1q452nzb218fjlwsxxwzaz5gbr"; depends=[]; }; ArCo = derive2 { name="ArCo"; version="0.3-1"; sha256="1afjdmcalx3m19jlvqs83fg5qlds59l5zzg3pzk13qk31r0hz7mk"; depends=[boot glmnet Matrix]; }; ArDec = derive2 { name="ArDec"; version="2.1-1"; sha256="17k2lnvh6vf9gy2xmyncriyjxy37ih7plvslld37kbrwh8dhybx0"; depends=[]; }; @@ -217,11 +226,12 @@ in with self; { AssetCorr = derive2 { name="AssetCorr"; version="1.0.4"; sha256="0r98li2lxhfap1hn6h0l78phpm9m1nlcqhwzpq0ahhw0b1rd4qkf"; depends=[boot ggplot2 knitr mvQuad mvtnorm numDeriv qpdf Rdpack VineCopula]; }; AssetPricing = derive2 { name="AssetPricing"; version="1.0-3"; sha256="199ygwfddpzxnj388gxkn7xyhnvjr24f5jg4lnydh0z7pb96pm5r"; depends=[deSolve polynom]; }; AssocAFC = derive2 { name="AssocAFC"; version="1.0.2"; sha256="1rjiiir472dnr15xyvpn81s62nf01gl70khr8mrni65ssp5m30fb"; depends=[CompQuadForm]; }; + AssocBin = derive2 { name="AssocBin"; version="0.1-0"; sha256="0d5jd96mipwgfnc1qys61hly8bk8l8a0xhi4x677zm2sd9gkp6ic"; depends=[]; }; AssocTests = derive2 { name="AssocTests"; version="1.0-1"; sha256="1wp5swnpd6m5g4zm14lllclmw058513n1g3kq1iqc0acjavkqy17"; depends=[cluster combinat fExtremes mvtnorm]; }; AsthmaNHANES = derive2 { name="AsthmaNHANES"; version="1.1.0"; sha256="106c6fh20s98fzixs4jpa4d413himrfg31rzwsxp72yldqxg70fx"; depends=[]; }; AsyK = derive2 { name="AsyK"; version="1.5.5"; sha256="0mr09gfxq2xsdrh7h28fkczhs44m367gf7zj09kc5lc5zwd9fs83"; depends=[DELTD]; }; AsymmetricSORDs = derive2 { name="AsymmetricSORDs"; version="1.0.0"; sha256="0a6ika2vlnklbsr7lmihysbhzzc5za2aw77iw6pc19cw6mba6mpy"; depends=[]; }; - AsynchLong = derive2 { name="AsynchLong"; version="2.2"; sha256="0b6bx6r8cw0n7r9ynaadh3mdqyjlqizvklsb43af27iqqapl272d"; depends=[]; }; + AsynchLong = derive2 { name="AsynchLong"; version="2.3"; sha256="1fnrx8dgghs579zpckymc0lip9hisn70agv71kbicgi80k8wn62s"; depends=[]; }; AteMeVs = derive2 { name="AteMeVs"; version="0.1.0"; sha256="0k0kgaq20nygr8l2fq1wq94cfi8f0kxbnzk264d0q4k43mq688yj"; depends=[MASS ncvreg]; }; AtlasMaker = derive2 { name="AtlasMaker"; version="0.1.0"; sha256="0p7n73yc4044c4hlnjf4wzhg9zvpwlv6wqw1ams0zb2qw9fcc0fy"; depends=[leaflet shiny]; }; AtmChile = derive2 { name="AtmChile"; version="1.0.1"; sha256="0r8js8racs93vxbq62b44qj9m1vsp24dv81bmsg0a3smpk67zd46"; depends=[data_table DT lubridate openair plotly shiny shinycssloaders]; }; @@ -260,22 +270,21 @@ in with self; { BAGofT = derive2 { name="BAGofT"; version="1.0.0"; sha256="0lvjygnphb2d5cammmswlnyn77vmy3k46r8hh8f3mfr7i68gcdvz"; depends=[dcov randomForest]; }; BALLI = derive2 { name="BALLI"; version="0.2.0"; sha256="0qmjwpj56n07dvjwfknqvc02f0y5mlwh2yz4lrw7c4wqgrckcpgi"; depends=[edgeR limma MASS]; }; BAMBI = derive2 { name="BAMBI"; version="2.3.5"; sha256="16pb04n30y8sl6m6qgrdxk7sck98233cravpbzw4fzl2j8h0mm3r"; depends=[bridgesampling coda future_apply gtools label_switching lattice loo mvtnorm numDeriv qrng RColorBrewer Rcpp RcppArmadillo scales]; }; - BAMMtools = derive2 { name="BAMMtools"; version="2.1.10"; sha256="1ng7pf08nk7y00146qvqr9099kpvbgn1swi3cawzr9zd55gv7qvr"; depends=[ape gplots Rcpp]; }; + BAMMtools = derive2 { name="BAMMtools"; version="2.1.11"; sha256="0ymb1vwrzwg7gs4n3zjikg10ajk75r18j5rlgs25n4ab4fp6sibp"; depends=[ape gplots Rcpp]; }; BANOVA = derive2 { name="BANOVA"; version="1.2.1"; sha256="07ghmzsb77vcd3snmg59spp60j603gawnqs847x1x44pnxs9l4wl"; depends=[coda rjags rstan runjags]; }; BAR = derive2 { name="BAR"; version="0.1.1"; sha256="0bcq6lvijq1vxri2dbhnqcn46f799h3ag974zgcdpx4c5apph04w"; depends=[]; }; BART = derive2 { name="BART"; version="2.9.4"; sha256="0m8vznp31sddg2cvm329f8dhd325q67q7f2wfg30l183w2n7b2gi"; depends=[nlme nnet Rcpp survival]; }; - BAS = derive2 { name="BAS"; version="1.6.4"; sha256="1w7y3cp6j1pak2wq6wf9wffas0yvsz716qbva2bx9nln72gr05z5"; depends=[]; }; + BAS = derive2 { name="BAS"; version="1.7.1"; sha256="1j76r9wl2limr7adlyr05n22q75sk8n03ar5bblpckcyrrqvpgr8"; depends=[]; }; BASS = derive2 { name="BASS"; version="1.3.1"; sha256="00py6s7b9lv8lsycpa79gbwrlbghgsffd2avggb77gxpl0g8vfz0"; depends=[hypergeo truncdist]; }; BASiNET = derive2 { name="BASiNET"; version="0.0.5"; sha256="09g2h38kz1g9kkjc69si5d6z6fkayys9hinjs3p6dn7sx7zn2bx1"; depends=[Biostrings igraph randomForest rJava rmcfs RWeka]; }; BASiNETEntropy = derive2 { name="BASiNETEntropy"; version="0.99.6"; sha256="00lid7crjjcrfkfqdnkk7i5zlp17wvnirbgb3xb5s8wlc5cyhxyq"; depends=[Biostrings igraph randomForest]; }; - BAT = derive2 { name="BAT"; version="2.9.4"; sha256="0jrid2bmwplnam70y9vgm7dn32bvi80r81c5zrmpsmq4ywj7yfrf"; depends=[ape geometry hypervolume MASS nls2 phytools terra vegan]; }; + BAT = derive2 { name="BAT"; version="2.9.5"; sha256="14g0k90061is0p8p4y41m536zf2jdapvvfjnxzni31y2mqd1id2h"; depends=[ape geometry hypervolume MASS nls2 phytools terra vegan]; }; BAYSTAR = derive2 { name="BAYSTAR"; version="0.2-10"; sha256="1yn79nkwi33d6qsiklay3ngk26dvi44lap59zp545gidvn9fbir6"; depends=[coda mvtnorm]; }; - BAwiR = derive2 { name="BAwiR"; version="1.3"; sha256="1avqylrvsshhmvf4fd612949ymyx2i7m7k6w29pcnrawai1qw54c"; depends=[Anthropometry dplyr ggplot2 ggthemes httr lubridate magrittr plyr purrr readr reshape2 rvest rworldmap scales stringi stringr tibble tidyr xml2]; }; + BAwiR = derive2 { name="BAwiR"; version="1.3.1"; sha256="151sybx7plfxhrs5gq6r6fn0mjvryw03g86bv08scn7wyv99mliw"; depends=[Anthropometry dplyr ggplot2 httr lubridate magrittr plyr purrr readr reshape2 rvest rworldmap scales stringi stringr tibble tidyr xml2]; }; BB = derive2 { name="BB"; version="2019.10-1"; sha256="0kf9sfsm3n036a8a8gjfpc9qdryvadb019kqjh80n1szdv7bdl04"; depends=[quadprog]; }; BBEST = derive2 { name="BBEST"; version="0.1-8"; sha256="0j3ykxsmxima75h40mhqm32l2ffc27pk11rfzjyvv1cm6q2q3gbh"; depends=[aws DEoptim ggplot2 reshape2 shiny]; }; BBI = derive2 { name="BBI"; version="0.3.0"; sha256="167sndfp3776p8n9zdpihc9xhqqi8wygzpl49dzkfj53gwa77rnn"; depends=[vegan]; }; BBSSL = derive2 { name="BBSSL"; version="0.1.0"; sha256="0vb3afbx8p3frliy92sf2wlmx32rasxj39i8d023m2dvsblbh50x"; depends=[glmnet greybox Matrix mvnfast rmutil statmod svMisc truncnorm]; }; - BBcor = derive2 { name="BBcor"; version="1.0.3"; sha256="160d34an9837i9myw9m0yxplh1z2cmhx2wc7m59dlld5zap4glag"; depends=[bayeslincom ggplot2 pbapply psych Rdpack wdm]; }; BBmisc = derive2 { name="BBmisc"; version="1.13"; sha256="01a43raxj374cg6khs14r0bxvfm8v1sp0p2ambp7npnizvwxqi8i"; depends=[checkmate data_table]; }; BCA1SG = derive2 { name="BCA1SG"; version="0.1.0"; sha256="14jvi5gn19f72szcnyhfpdld00cc7gyih5qrm4bpzvp553f1svvk"; depends=[logOfGamma Matrix]; }; BCBCSF = derive2 { name="BCBCSF"; version="1.0-1"; sha256="0hvhnra68i0x78n57nlbxmz0qwl2flng9w47089jw6f9hzkq9r7n"; depends=[abind]; }; @@ -283,7 +292,7 @@ in with self; { BCClong = derive2 { name="BCClong"; version="1.0.1"; sha256="1dsiwrz1r0wab0pif33b7ds5d6v89fapb0w9safz45qmxkafs2z6"; depends=[cluster coda ggplot2 label_switching LaplacesDemon lme4 MASS mclust MCMCpack mixAK mvtnorm nnet Rcpp RcppArmadillo Rmpfr truncdist]; }; BCDating = derive2 { name="BCDating"; version="0.9.8"; sha256="1px9fimg3fqx8bfkzq6rl34xclc9gcjxqjvj5islpdy4f1ifwph3"; depends=[]; }; BCE = derive2 { name="BCE"; version="2.2.0"; sha256="13banjjk14rrmyd66iayywip9aznfsk8x3yk4pamlw87byf0z3vk"; depends=[FME limSolve Matrix]; }; - BCEA = derive2 { name="BCEA"; version="2.4.4"; sha256="0l67gk8myswf476i6r9kf433z7py2mkabmrx94cizi17q2l39wfx"; depends=[cli dplyr ggplot2 gridExtra MASS Matrix MCMCvis purrr Rdpack reshape2 rlang scales]; }; + BCEA = derive2 { name="BCEA"; version="2.4.5"; sha256="04mccrbm35wp2ibjcqyiynwcvdyrnxp0574waljy40kwwrami1mn"; depends=[cli dplyr ggplot2 gridExtra MASS Matrix MCMCvis purrr Rdpack reshape2 rlang rstan scales voi]; }; BCEE = derive2 { name="BCEE"; version="1.3.2"; sha256="181khl93rsrqjm8cmn14a6bb7s47dp3xc31gm9rk088ixfjadq7h"; depends=[BMA boot leaps Rcpp RcppArmadillo]; }; BCHM = derive2 { name="BCHM"; version="1.00"; sha256="1nyf65grcyf74sixixzl12gylk2rzh7n5id4mbhim4lzdm4j272i"; depends=[cluster coda crayon knitr plyr rjags]; }; BCRA = derive2 { name="BCRA"; version="2.1.2"; sha256="17h0ara1y3fh2xyhjarbw3b549v6kq108bg946ndh7kjykara9dd"; depends=[]; }; @@ -291,6 +300,7 @@ in with self; { BCT = derive2 { name="BCT"; version="1.2"; sha256="0fs6wh59njgj7ybnkf5ki4g8phmzrchvml0f8jyhhxdarkj5vr5d"; depends=[igraph Rcpp stringr]; }; BCgee = derive2 { name="BCgee"; version="0.1.1"; sha256="09p2523hslfhg0qryfn81cd5mn8nskiv98yw3s0ajfywfnwrb68k"; depends=[]; }; BClustLonG = derive2 { name="BClustLonG"; version="0.1.3"; sha256="1p6fm60vhs9l3b120h2l7nz4rf4ckhka7124kzwjd7znax2a336g"; depends=[lme4 MASS mcclust Rcpp RcppArmadillo]; }; + BDAlgo = derive2 { name="BDAlgo"; version="0.1.0"; sha256="0f7aqbyfwyfq18z8ygjna3i38dnx2bm4wpkgvdsqwbiby9swqr6d"; depends=[inflection]; }; BDEsize = derive2 { name="BDEsize"; version="1.6"; sha256="0dyjd5f1cqmzqnrbxz06pbxrk6gjrmsh2x6p7qllczvlmm7jdm5i"; depends=[fpow ggplot2]; }; BDP2 = derive2 { name="BDP2"; version="0.1.3"; sha256="14m85sigx6hk0qzhfgih43m2lxp9xczmp9g3z4pping6msbnbdrz"; depends=[rmarkdown shiny shinyBS]; }; BDWreg = derive2 { name="BDWreg"; version="1.2.0"; sha256="07j6dy69q1as1nwgp2790wzpzmjich2256cddhl7n3h2rs1dja74"; depends=[coda doParallel DWreg foreach MASS]; }; @@ -303,17 +313,17 @@ in with self; { BEKKs = derive2 { name="BEKKs"; version="1.4.3"; sha256="039may5c788sdhjgbbcljwn71wpya8d9mcj8zqg3yqm8mxjcgzk0"; depends=[forecast future future_apply GAS ggfortify ggplot2 gridExtra ks lubridate mathjaxr moments numDeriv pbapply Rcpp RcppArmadillo reshape2 xts]; }; BENMMI = derive2 { name="BENMMI"; version="4.3-7"; sha256="1v96g4l1zkpvvx8jdifnafyaz4ml8v1bxbl97r1n5n6mgw88gk77"; depends=[benthos dplyr ggplot2 jsonlite knitr markdown purrr readr tidyr xtable]; }; BESTree = derive2 { name="BESTree"; version="0.5.2"; sha256="0yij6xdlvhbqifckaylgbhszwwp38d9x6vbpr1nl40mwwnv4bswz"; depends=[plyr]; }; - BET = derive2 { name="BET"; version="0.5.2"; sha256="0zsbj8agw8x04n2adbdb8k85m51hkyl7hcc8gnlw6gxpng3i2gnm"; depends=[Rcpp]; }; + BET = derive2 { name="BET"; version="0.5.3"; sha256="1c2zz1nfjvaq6skk81hidimlbgajcl3zp5cnl3innh3yrl818wbl"; depends=[Rcpp]; }; BETS = derive2 { name="BETS"; version="0.4.9"; sha256="0daixk7mqmk2jq35i7mjaslz11gxbnnjgwxfvj8x1s88vz9l74sm"; depends=[DBI digest dplyr DT dygraphs forecast foreign ggplot2 grnn htmltools httr lubridate miniUI plotly rjson rmarkdown RMySQL rstudioapi rvest seasonal shiny sqldf stringr urca webshot xml2 zoo]; }; - BFF = derive2 { name="BFF"; version="1.0.0"; sha256="1kbji9fh7d0ww5klwvlxgljflidkh2rywgb8xwj5j1j0y21lipfx"; depends=[BSDA]; }; - BFS = derive2 { name="BFS"; version="0.5.5"; sha256="0q4w1r9zf7ki3y4pxxmf40f1rpx9gx55bdysgdq42axbjbij944l"; depends=[curl dplyr fs httr2 janitor magrittr purrr pxweb rstac rvest sf tibble tidyRSS xml2 zip]; }; + BFF = derive2 { name="BFF"; version="3.0.1"; sha256="1sya6ww8jwi56zb3i2rjhk1qd52n5s9sqlzndyk812zyxj6h5zim"; depends=[BSDA ggplot2 gsl hypergeo Matrix]; }; + BFS = derive2 { name="BFS"; version="0.5.6"; sha256="0f09r3m10a55xriajpnwpjnahkh09s87jxrik9icwmc9d3wfj9q4"; depends=[curl dplyr fs httr2 janitor lifecycle magrittr purrr pxweb rstac rvest sf tibble tidyRSS xml2 zip]; }; BFpack = derive2 { name="BFpack"; version="1.2.3"; sha256="1bji697998qkb56gid8jd6bp9gqwxkls73d8vk55z838r60irlla"; depends=[bain Bergm ergm extraDistr lme4 MASS mvtnorm pracma QRM sandwich]; }; BGData = derive2 { name="BGData"; version="2.4.1"; sha256="1bx63spfmsn9hz3qxhkvipfvyqcdy4afqzcada3bgly265kdg10h"; depends=[BEDMatrix bigmemory bit crochet ff LinkedMatrix symDMatrix synchronicity]; }; BGFD = derive2 { name="BGFD"; version="0.1"; sha256="0983v66bjp9v3jp7zbjyffda1gaf20nakqr94c32lvh9wmk0y1s9"; depends=[AdequacyModel]; }; BGGE = derive2 { name="BGGE"; version="0.6.5"; sha256="1h76c40y45xhf2vp9g0q5j9lfwh16q9axbk5c9aqn4md008xr1j2"; depends=[]; }; - BGLR = derive2 { name="BGLR"; version="1.1.0"; sha256="19qy8llmagrsm28nb80d029wkvqpv6r12f390zlhid0y8s5bpicp"; depends=[MASS truncnorm]; }; + BGLR = derive2 { name="BGLR"; version="1.1.1"; sha256="1wv29crcq1iqrvak749vq08fjfr2ys82fkni07ipwl99hknsz5sr"; depends=[MASS truncnorm]; }; BGPhazard = derive2 { name="BGPhazard"; version="2.1.1"; sha256="0i2fsvb9pvvhl4xpp87cacg9934hsi060c6d1z3j5hylwyq2k5h9"; depends=[Brobdingnag dplyr ggplot2 ggthemes gridExtra magrittr progress purrr readr rlang stringr survival tibble tidyr]; }; - BGVAR = derive2 { name="BGVAR"; version="2.5.2"; sha256="0nqlzhdg5z8p5c9qiccldi8fy97w9pnna0nrlvl6n9kxm2si2pp0"; depends=[abind bayesm coda GIGrvg knitr MASS Matrix Rcpp RcppArmadillo RcppParallel RcppProgress readxl stochvol xts zoo]; }; + BGVAR = derive2 { name="BGVAR"; version="2.5.5"; sha256="10cj8lx63jdzmvw674zj4vawvf3mwvyjxjpqicy9ajm6r6gbccj8"; depends=[abind bayesm coda GIGrvg knitr MASS Matrix Rcpp RcppArmadillo RcppParallel RcppProgress readxl stochvol xts zoo]; }; BGmisc = derive2 { name="BGmisc"; version="1.0.1"; sha256="0r44n75n19x2dwi7ysisl49309pwimq3nz66a0041ibhclf1rzvr"; depends=[igraph kinship2 Matrix]; }; BH = derive2 { name="BH"; version="1.81.0-1"; sha256="0r7zjxpbm2paliplprwf9769a57clqaiskiiadiy10gissnqn77m"; depends=[]; }; BHAI = derive2 { name="BHAI"; version="0.99.2"; sha256="1hawa55mk590is8ziav7fdszsa3a42bqb0znzqsazz5lkg4daaa7"; depends=[MCMCpack plotrix prevtoinc]; }; @@ -326,7 +336,7 @@ in with self; { BIEN = derive2 { name="BIEN"; version="1.2.6"; sha256="17zrj5ckxaz4mdbgywxi8kf51ssbf2md1d2azf30dh96kzc2ayps"; depends=[ape DBI doParallel fasterize foreach raster RPostgreSQL sf terra]; }; BIFIEsurvey = derive2 { name="BIFIEsurvey"; version="3.4-15"; sha256="0dm2yq2mmpiksmd1r248dv64sn72gazlsrjjwb0bsblivk69s21j"; depends=[miceadds Rcpp RcppArmadillo]; }; BIGDAWG = derive2 { name="BIGDAWG"; version="3.0.3"; sha256="1zbikvhyaksbddv2kz8nqkidjy4qsfp6a8wwyxjy5a0wcnqnwsxf"; depends=[haplo_stats httr XML]; }; - BIGL = derive2 { name="BIGL"; version="1.8.0"; sha256="1wyzancryb8aab18qjb0c1pl780chk0kgk7asa430gnphz7fm8sj"; depends=[data_table ggplot2 MASS minpack_lm nleqslv numDeriv plotly progress robustbase scales]; }; + BIGL = derive2 { name="BIGL"; version="1.9.0"; sha256="14igfl863v4hgzpry8a4p2hribi2slsahl1bn3amsr8cj311km64"; depends=[data_table ggplot2 lifecycle MASS minpack_lm nleqslv numDeriv plotly progress robustbase scales]; }; BINCOR = derive2 { name="BINCOR"; version="0.2.0"; sha256="0x2s82jql429shk70bhjdy9kamz8dz5ymsxj6kp8ga1711bpwyq6"; depends=[pracma]; }; BINtools = derive2 { name="BINtools"; version="0.2.0"; sha256="0x97h0b2krdgrd0x266fidj77an3dq8mf9lnbas9112p4mhkmk58"; depends=[BH combinat dplyr mvtnorm Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders stringi tibble]; }; BIOMASS = derive2 { name="BIOMASS"; version="2.1.11"; sha256="1qbx7hxzzwnwp00rdvdwqxawm54chn1pcql3009cwdydc249v0dh"; depends=[data_table jsonlite minpack_lm proj4 rappdirs sf terra]; }; @@ -361,8 +371,10 @@ in with self; { BOSO = derive2 { name="BOSO"; version="1.0.3"; sha256="0zax40x2d62vcn8zznmzmykk33mv4vbjfl88i3r1djbvalcdf5cf"; depends=[MASS Matrix]; }; BOSSreg = derive2 { name="BOSSreg"; version="0.2.0"; sha256="0ln4nx0jlvz5kqk9qkcl8a2cyhsdcqqfs5112qcaabjiwjnvla7w"; depends=[glmnet Matrix Rcpp RcppArmadillo]; }; BPM = derive2 { name="BPM"; version="1.0.0"; sha256="17k2d1xjfz85ygx0xnh6yqca9nyypd32d7sbna3k33ynsjqay3x8"; depends=[limma]; }; + BPrinStratTTE = derive2 { name="BPrinStratTTE"; version="0.0.2"; sha256="1sddfxcbk9zg266gsvb6qs6c3mw4y1d88jj6zf9781jranpb1hng"; depends=[BH dplyr furrr magrittr purrr Rcpp RcppEigen RcppParallel rstan StanHeaders stringr tibble]; }; BRACE = derive2 { name="BRACE"; version="0.1.0"; sha256="19paaxk0szd5azcw95sd22fryb38lamd8r4y1f6zmcngbza470dk"; depends=[survival survminer]; }; BRACoD_R = derive2 { name="BRACoD.R"; version="0.0.2.0"; sha256="1jxxrgq2s5fqflp9ac4fx51jhlx33pdwijsp4vq63y430k79vcpp"; depends=[reticulate]; }; + BRBVS = derive2 { name="BRBVS"; version="0.1.1"; sha256="0ibbnfgna80xdb7lzmc0jvlkgw4xrgva1s4bnm0cq93412r2lnay"; depends=[copent ggplot2 GJRM mvtnorm]; }; BRDT = derive2 { name="BRDT"; version="0.1.0"; sha256="1yv2fh4cc9h35l8cngpxnqa83a7bx79pr7c1gp9h84p1pigg8282"; depends=[]; }; BREADR = derive2 { name="BREADR"; version="1.0.1"; sha256="1bvi3zvsqrin3jl2dwvrw18k9bbrhzcjhnr18sz9pmbgkfkjs4wk"; depends=[data_table dplyr forcats ggplot2 ggpubr magrittr matrixStats purrr readr stringr tibble]; }; BRETIGEA = derive2 { name="BRETIGEA"; version="1.0.3"; sha256="0q4phggz6smzd294znr1fp0gskpcwdbd6hnvvl3q3z1h7cpf40sn"; depends=[]; }; @@ -389,7 +401,8 @@ in with self; { BTSR = derive2 { name="BTSR"; version="0.1.5"; sha256="0kqgy61ijalpclrm20xwjbvbb5pkhkbgsbdbsz0mrb4v30a05dh4"; depends=[]; }; BTYD = derive2 { name="BTYD"; version="2.4.3"; sha256="1szkpcmagpig32vbs7klx71avjlmbd0cn123ljpc3i02b55lma7z"; depends=[dplyr hypergeo Matrix optimx]; }; BTYDplus = derive2 { name="BTYDplus"; version="1.2.0"; sha256="1shai7kij20g3isd6l29i696pkzymr0qq2i9gzfsxmvdb4g4pcm2"; depends=[bayesm BTYD coda data_table mvtnorm Rcpp]; }; - BTdecayLasso = derive2 { name="BTdecayLasso"; version="0.1.0"; sha256="0x1s2zvv3vnapk5wp8582zwflsqvgc8khkvl5ch9i70v739jxp15"; depends=[ggplot2 optimr]; }; + BTdecayLasso = derive2 { name="BTdecayLasso"; version="0.1.1"; sha256="0ig1nbhjs1xb9743j3q7ggp01s780hw0b1xjn8spkfkjad1ijsbm"; depends=[ggplot2 optimx]; }; + BTtest = derive2 { name="BTtest"; version="0.10"; sha256="1sn49rf338n2ql7bj6x682f5nrskx94lj1isisqpfzwdiydaw5yi"; depends=[Rcpp RcppArmadillo]; }; BUCSS = derive2 { name="BUCSS"; version="1.2.1"; sha256="1nf0xpy5r49yfd0xydzxxxrc6isj14s8lswrf5nhh7g60nkkwcxr"; depends=[]; }; BVAR = derive2 { name="BVAR"; version="1.0.4"; sha256="12bbqnycdw53rha6kb5s3wmzbyp5z3mzdq77akfq6w8q4iwy6324"; depends=[mvtnorm]; }; BVARverse = derive2 { name="BVARverse"; version="0.0.1"; sha256="00nghvd5bavmn5hw89pcz20x5kbpxr707r5yvvsakn77rdis37ig"; depends=[BVAR generics ggplot2 rlang tidyr]; }; @@ -430,16 +443,18 @@ in with self; { BayesDissolution = derive2 { name="BayesDissolution"; version="0.1.0"; sha256="1h3npy56k3npn1ddh766hrx7haq2xvqmryw58mpmi9a50cf8vs2f"; depends=[geoR MCMCpack mnormt pscl]; }; BayesESS = derive2 { name="BayesESS"; version="0.1.19"; sha256="023r5pxqa2ll3vyfmchdlcg6ay0qixphz24078g1immqp43mlrxm"; depends=[dfcrm LaplacesDemon MASS MatrixModels MCMCpack Rcpp RcppArmadillo RcppEigen]; }; BayesFM = derive2 { name="BayesFM"; version="0.1.5"; sha256="1x6paj5fr036mry6yr32vrxx2kfz89c8dz39ky1nc6jg1q7x5a8i"; depends=[checkmate coda ggplot2 gridExtra plyr]; }; - BayesFactor = derive2 { name="BayesFactor"; version="0.9.12-4.5"; sha256="10bclqzczawpssjwa3b177xpab4mdhczfj1qj23xn2yvrrw1z9mh"; depends=[coda hypergeo Matrix MatrixModels mvtnorm pbapply Rcpp RcppEigen stringr]; }; - BayesFluxR = derive2 { name="BayesFluxR"; version="0.1.2"; sha256="1wl1wbncw6klf95zcarwy55dssl5a48v4m7j2k1cpp1f4dx2pb4r"; depends=[JuliaCall]; }; + BayesFactor = derive2 { name="BayesFactor"; version="0.9.12-4.6"; sha256="1nvm26m5m8xi8iw1fj8ca79z3aqln4l3c0hvh38yvm9p584nwpzx"; depends=[coda hypergeo Matrix MatrixModels mvtnorm pbapply Rcpp RcppEigen stringr]; }; + BayesFluxR = derive2 { name="BayesFluxR"; version="0.1.3"; sha256="0kj7hxj39k0k6njf24ldb6w10qdwambd8hm6xpjfa1brb807lwkj"; depends=[JuliaCall]; }; BayesGOF = derive2 { name="BayesGOF"; version="5.2"; sha256="17wm0228xq3db431abyi9jr0q1q86nnajsn7hmy4dwzgvrlz5s0i"; depends=[Bolstad2 nleqslv orthopolynom VGAM]; }; BayesGPfit = derive2 { name="BayesGPfit"; version="1.1.0"; sha256="08ayk6cxhqwymmr559rrmg35s2i2kbvrxd408vy6xrsyvidjppi5"; depends=[lattice]; }; BayesGWQS = derive2 { name="BayesGWQS"; version="0.1.1"; sha256="1vxln01194ipfhzid48x95hrpzkwylhr3nx1dh38rkfsg9fpl2af"; depends=[coda plyr rjags stringr]; }; + BayesGmed = derive2 { name="BayesGmed"; version="0.0.2"; sha256="0clyjdp0306wgj1jbrh2bzhzzyn8wp56m3j4pphyxn15z7j9pmy9"; depends=[BH Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; + BayesGrowth = derive2 { name="BayesGrowth"; version="1.0.0"; sha256="0snjl40x8h8v8y6wm8lby4h4wm78qgbaq2jx45s96lz9cmfhdz2c"; depends=[AquaticLifeHistory bayesplot BH dplyr ggplot2 loo Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders tibble tidybayes]; }; BayesLCA = derive2 { name="BayesLCA"; version="1.9"; sha256="11ji5s1njip57zkr4bxwp3agx1ddv7yagm5prn9ckcbasan4rbx1"; depends=[coda e1071 fields MCMCpack nlme]; }; - BayesLN = derive2 { name="BayesLN"; version="0.2.8"; sha256="1rgf2j8al7gm8j77b5kjmjpygdv70s994yvdnhxpgg2b1sz8glvw"; depends=[coda data_table GeneralizedHyperbolic gsl lme4 MASS Matrix optimx Rcpp RcppEigen]; }; + BayesLN = derive2 { name="BayesLN"; version="0.2.10"; sha256="0p8g0h4zqz5njr7lkkv2hhq9qas9lvrxamg8xb9hkqrxfxd0d3nn"; depends=[coda data_table GeneralizedHyperbolic gsl lme4 MASS Matrix optimx Rcpp RcppEigen]; }; BayesLogit = derive2 { name="BayesLogit"; version="2.1"; sha256="0w3bzk39sxdskwikcz5i0xwfsll4sqgkpr8vw8jvzlcy6dl3yhis"; depends=[]; }; BayesMFSurv = derive2 { name="BayesMFSurv"; version="0.1.0"; sha256="1yxxzwjh1fgfh7qkzf9dfm3x0vbgb0v4p6bf6b5w14kvm06rzhkg"; depends=[coda FastGP MCMCpack mvtnorm Rcpp RcppArmadillo]; }; - BayesMallows = derive2 { name="BayesMallows"; version="1.4.0"; sha256="1irplamvggsds8jdb0pcz2wh8chdhkrgk22n2hgwl4yb1ysdqi3z"; depends=[cowplot ggplot2 HDInterval igraph Rcpp RcppArmadillo Rdpack relations rlang sets testthat]; }; + BayesMallows = derive2 { name="BayesMallows"; version="1.5.0"; sha256="07bwfz1ja3cqlpsxplv2xkm99z0xcpdaa4b3lifgds8sigi1kpfl"; depends=[cowplot ggplot2 HDInterval igraph Rcpp RcppArmadillo Rdpack relations rlang sets testthat]; }; BayesMassBal = derive2 { name="BayesMassBal"; version="1.1.0"; sha256="1cgcx8kvn0bmn8kmq8ri3k98yx085d2qndislbwhn833ws6vkl88"; depends=[coda HDInterval LaplacesDemon Matrix pracma Rdpack tmvtnorm]; }; BayesMixSurv = derive2 { name="BayesMixSurv"; version="0.9.1"; sha256="19kf39881q00pap9afwvvggk4s4w3qpz17b7065nig1mvk8dnp8r"; depends=[survival]; }; BayesMortalityPlus = derive2 { name="BayesMortalityPlus"; version="0.1.1"; sha256="1ynsjk82ppdqh1qq9xk0rs3m5d0aj375zaj9w54v80r2sq6k5pzm"; depends=[dplyr ggplot2 magrittr MASS progress scales tidyr]; }; @@ -448,7 +463,7 @@ in with self; { BayesNSGP = derive2 { name="BayesNSGP"; version="0.1.2"; sha256="0va4gvyfwfdk3yvhdyxc49qlmzxfblwlmwqh79b93zkv8239kkk1"; depends=[FNN Matrix nimble StatMatch]; }; BayesNetBP = derive2 { name="BayesNetBP"; version="1.6.1"; sha256="1c6a82qlcrpbb2c4zp3gk24wcgw6x62lm8hm6n2l1r307dxm2rpb"; depends=[bnlearn doBy fields graph igraph RColorBrewer]; }; BayesOrdDesign = derive2 { name="BayesOrdDesign"; version="0.1.2"; sha256="1417zd1n5sip999n6q6bgs85c0000ksl73a4p94y0lmdn27i8pmj"; depends=[coda ggplot2 gsDesign madness ordinal R2jags rjags rjmcmc schoolmath superdiag]; }; - BayesPPD = derive2 { name="BayesPPD"; version="1.1.1"; sha256="1rkbcz5kx8pxsm1q6rryyyc4j1dn049hysdj3piwk71jpl43b0jj"; depends=[Rcpp RcppArmadillo RcppEigen RcppNumerical]; }; + BayesPPD = derive2 { name="BayesPPD"; version="1.1.2"; sha256="0c015l8ih1ck1qb31vvnn95fivf5r3ns58pdlm4x5bf7giprjxf4"; depends=[Rcpp RcppArmadillo RcppEigen RcppNumerical]; }; BayesPieceHazSelect = derive2 { name="BayesPieceHazSelect"; version="1.1.0"; sha256="0znbmv7crqycdx75jh02h6z8d6cifjszbrldv2yva4mkjxsydag5"; depends=[mvtnorm]; }; BayesPostEst = derive2 { name="BayesPostEst"; version="0.3.2"; sha256="0r05by4w80j6hb22v3ibj686ixxbj7lkxq499fciz5lqs4lxzf3h"; depends=[brms carData caTools coda dplyr ggplot2 ggridges HDInterval MCMCpack R2jags R2WinBUGS reshape2 rjags rlang ROCR rstanarm runjags texreg tidyr]; }; BayesProject = derive2 { name="BayesProject"; version="1.0"; sha256="0b1xqw7f9kfbmr8m6fl9d2fpwr364s4a5vdw57l6i5rm6lszyfh5"; depends=[Rcpp RcppEigen Rdpack]; }; @@ -458,7 +473,7 @@ in with self; { BayesRepDesign = derive2 { name="BayesRepDesign"; version="0.42"; sha256="0xm3ap8lwg52760kyfp71i52mpkkh32753fprb4dfy1ry7g2qmyv"; depends=[lamW]; }; BayesReversePLLH = derive2 { name="BayesReversePLLH"; version="1.5"; sha256="08zx8paaqg8zkf4d2rfparbi54p1i9wr05iqp7nqy7xv3isq1zfp"; depends=[Rcpp RcppArmadillo]; }; BayesS5 = derive2 { name="BayesS5"; version="1.41"; sha256="0vs6s50h4gpxda9lbxfgn76k9kp81l62a6bv22r7ixsjlnd4baql"; depends=[abind Matrix snowfall splines2]; }; - BayesSUR = derive2 { name="BayesSUR"; version="2.1-4"; sha256="193dgx3ih81sg2m8qfpxvx0d2q2bjvf6x2yvf5k8psb04s374g33"; depends=[igraph Matrix Rcpp RcppArmadillo tikzDevice xml2]; }; + BayesSUR = derive2 { name="BayesSUR"; version="2.1-5"; sha256="05md6y25jsl4g2l5z4pq5cbrs7m91qcfz9i9ds6i2zrvwxcb7v0j"; depends=[igraph Matrix Rcpp RcppArmadillo tikzDevice xml2]; }; BayesSampling = derive2 { name="BayesSampling"; version="1.1.0"; sha256="1nwwf195b7hly7kjfikizyvgc975g74z6hsm89c1ibfgxlj51bcw"; depends=[MASS Matrix matrixcalc]; }; BayesSenMC = derive2 { name="BayesSenMC"; version="0.1.5"; sha256="16949bcakx4a77md1rm6364mzsjxr7gpmz2rxnslhz2szx4cnnaj"; depends=[BH dplyr ggplot2 lme4 Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; BayesSpec = derive2 { name="BayesSpec"; version="0.5.3"; sha256="17gchdijcjhbr2y4glbq9szjh4qmgivzh6p4fllh589da18nzjcr"; depends=[mvtnorm pscl trust]; }; @@ -470,27 +485,30 @@ in with self; { BayesVarSel = derive2 { name="BayesVarSel"; version="2.2.5"; sha256="1hp8cy9dbna32r57pjpsi9kx9vm18s0xr3gk1ndj0rbzn4193jdn"; depends=[MASS mvtnorm]; }; BayesX = derive2 { name="BayesX"; version="0.3-3"; sha256="1yxj13nyzhwl2ak9y4y7cdcrrrfb78wdynggs6v76n94pghc9dgp"; depends=[coda colorspace interp sf shapefiles sp]; }; BayesXsrc = derive2 { name="BayesXsrc"; version="3.0-4"; sha256="0km6w8wzyvwisjzyqyigkl7mz1ixmsch4c98bzzc0a2z34bi4jmg"; depends=[]; }; - BayesfMRI = derive2 { name="BayesfMRI"; version="0.3.5"; sha256="1fcfg84i72m3hyccm4nws022jk3rjqzjjcr8b429gn2f46x793nm"; depends=[ciftiTools excursions fMRItools foreach MASS Matrix matrixStats Rcpp RcppEigen sp]; }; + BayesfMRI = derive2 { name="BayesfMRI"; version="0.3.11"; sha256="19yn8d3jbh1fpxdmqvz3yflnml4fdxb966w44yqha4wjhzfp6hym"; depends=[ciftiTools excursions fMRItools foreach MASS Matrix matrixStats Rcpp RcppEigen sp]; }; + BayesianFactorZoo = derive2 { name="BayesianFactorZoo"; version="0.0.0.2"; sha256="1w06hizaj4vxrhxv4jgr0s5ak1w0rr3j2zcdz7cf0mnrbg600dfd"; depends=[coda ggplot2 MASS Matrix matrixcalc MCMCpack mvtnorm nse Rdpack reshape2 timeSeries]; }; BayesianGLasso = derive2 { name="BayesianGLasso"; version="0.2.0"; sha256="09yb1qqx6qlsspk3ndrcqxy0956iqznw0rmyvqxgxxp3zd3y21xp"; depends=[MASS statmod]; }; BayesianLaterality = derive2 { name="BayesianLaterality"; version="0.1.2"; sha256="1dy00xgz9cc65aj39nf76crhfxfyackpcniwadrh38mk8zpbka42"; depends=[dplyr purrr Rdpack rlang tidyr tmvtnorm]; }; + BayesianMCPMod = derive2 { name="BayesianMCPMod"; version="1.0.0"; sha256="1fcdjkisxbs0z82bf28dyxj110gvv463zq7k28l2ylakpr4346wp"; depends=[checkmate DoseFinding ggplot2 nloptr RBesT]; }; BayesianMediationA = derive2 { name="BayesianMediationA"; version="1.0.1"; sha256="1ygc0xhk7mk7pkqn0v9n23j1m75rr1r2ar30r386c1av3jh7krnw"; depends=[car gplots lattice R2jags survival]; }; BayesianNetwork = derive2 { name="BayesianNetwork"; version="0.3"; sha256="0nyv2maqssayd79fs0zhpblscd7nsvw7k4fmqzpfz2xgivnx2i5p"; depends=[bnlearn heatmaply lattice networkD3 plotly rintrojs shiny shinyAce shinydashboard shinyWidgets]; }; - BayesianPlatformDesignTimeTrend = derive2 { name="BayesianPlatformDesignTimeTrend"; version="1.2.1"; sha256="1yvgav1fc4mr74jgbcyqigh1y70vs1fwvcfcw03kip8rs5dfjxb5"; depends=[BH BiocManager boot doParallel foreach ggplot2 ggpubr iterators laGP lhs matrixStats RColorBrewer Rcpp RcppEigen RcppParallel reshape rstan rstantools StanHeaders stringr]; }; + BayesianPlatformDesignTimeTrend = derive2 { name="BayesianPlatformDesignTimeTrend"; version="1.2.3"; sha256="1v06airw3zzkvb5qmn0abyhkdp51wjmax101ljj9ibx01nj01zdv"; depends=[BH BiocManager boot doParallel foreach ggplot2 ggpubr iterators laGP lhs matrixStats RColorBrewer Rcpp RcppEigen RcppParallel reshape rstan rstantools StanHeaders stringr]; }; BayesianPower = derive2 { name="BayesianPower"; version="0.2.3"; sha256="00rn3wmqrhk2pssbq5j2prl8m6cgfarr49672pnksp2dcbi47p20"; depends=[]; }; - BayesianReasoning = derive2 { name="BayesianReasoning"; version="0.4.1"; sha256="0j8fzn6xza3vg7qbfxwhjncll9yx985660dr75y9qhhz84jis3dv"; depends=[dplyr ggforce ggplot2 magrittr reshape2 tibble tidyr]; }; + BayesianReasoning = derive2 { name="BayesianReasoning"; version="0.4.2"; sha256="0bl0crj9z0grgfsqzc403jd74f411ib827gkfqis0hbdi5y57gyw"; depends=[cli dplyr ggforce ggplot2 ggtext gt magrittr png reshape2 scales tibble tidyr]; }; BayesianTools = derive2 { name="BayesianTools"; version="0.1.8"; sha256="1ldx75g4ws2yrnq4xyj3j83xjhakhgbhn174lwqzviqynvbbshzm"; depends=[bridgesampling coda DHARMa ellipse emulator gap IDPmisc MASS Matrix msm mvtnorm numDeriv Rcpp tmvtnorm]; }; Bayesiangammareg = derive2 { name="Bayesiangammareg"; version="0.1.0"; sha256="0b0fqmig7vgmlrq2884q0apfd89nn5k4dj8rqjizkkbw4qpzmylb"; depends=[mvtnorm]; }; - Bayesiantreg = derive2 { name="Bayesiantreg"; version="1.0"; sha256="0m8snwhjskwxdm0a2wsmf1j7d0xxvg4sh0ix64zss71l610wica7"; depends=[MASS Matrix mvtnorm]; }; + Bayesiantreg = derive2 { name="Bayesiantreg"; version="1.0.1"; sha256="1bg6dqvpmsx4pnp0bv16m1rpgz68yjmcw8c832xn649fyk5dmanx"; depends=[MASS Matrix mvtnorm]; }; Bayesrel = derive2 { name="Bayesrel"; version="0.7.7"; sha256="0c6vpkljhisdznxw1g204gyfvpy2zs8yqymdbp35zxddygfdchgd"; depends=[coda LaplacesDemon lavaan MASS Rcpp RcppArmadillo Rdpack]; }; BcDiag = derive2 { name="BcDiag"; version="1.0.10"; sha256="1gyinmx5wn2kk70hiy28ghilkhfirfjbfqdrqq5h3wfb4khnq6pz"; depends=[fabia]; }; Bchron = derive2 { name="Bchron"; version="4.7.6"; sha256="1s8bx9a5rpcrw0msnjf565crz3d2fykvy5fj1chbqxzjh7qm865w"; depends=[checkmate coda dplyr ggforce ggplot2 ggridges magrittr MASS mclust purrr scales stringr]; }; + BeQut = derive2 { name="BeQut"; version="0.1.0"; sha256="065hjpz4162j2ykcwnri25j4mkqf7yl5bf9ja3xn7yvszif0pjh9"; depends=[jagsUI lqmm MASS survival]; }; BeSS = derive2 { name="BeSS"; version="2.0.3"; sha256="09zxpzcaj13fn38cwd0xk0254aphb3jn1wdwn9hiq9vapfsgn0dx"; depends=[glmnet Matrix Rcpp RcppEigen survival]; }; BeastJar = derive2 { name="BeastJar"; version="1.10.6"; sha256="0581q9m7lb681d12vld231vn6wqv5s2sqkvav4fd0xllvjighlx7"; depends=[rJava]; }; - BeeBDC = derive2 { name="BeeBDC"; version="1.0.1"; sha256="1zkf53smlqd1rzf9l7ibf45yws6n379bv3kqs6f2szai3npip5bw"; depends=[circlize CoordinateCleaner cowplot dplyr forcats ggplot2 ggspatial here igraph lubridate mgsub openxlsx paletteer readr rnaturalearth sf stringr tidyselect]; }; + BeeBDC = derive2 { name="BeeBDC"; version="1.0.3"; sha256="1v5wknw6d7dfcj3cqj1774v07838xpda75ai9mhrjd536c74rc1a"; depends=[circlize CoordinateCleaner cowplot dplyr forcats ggplot2 ggspatial here igraph lubridate mgsub openxlsx paletteer readr rnaturalearth sf stringr tidyselect]; }; BeeGUTS = derive2 { name="BeeGUTS"; version="1.1.3"; sha256="1880bsgwal06i7q3la1f8alrhj43mnsim6n8inrnaqcbqgi69v3n"; depends=[BH cowplot data_table dplyr ggplot2 gridExtra magrittr odeGUTS Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders tidyr]; }; Benchmarking = derive2 { name="Benchmarking"; version="0.31"; sha256="0gg4yay098ga08ns5ybn7s467prwbq0a94a0nfah30jy36ggdfs2"; depends=[lpSolveAPI quadprog Rcpp ucminf]; }; BenfordTests = derive2 { name="BenfordTests"; version="1.2.0"; sha256="1nnj0w0zwcmg7maqmmpixx7alvsyxva370ssc26ahg6kxy5a621w"; depends=[]; }; - Bergm = derive2 { name="Bergm"; version="5.0.6"; sha256="0ibbskkanff7hxk2bcp6p8v0zk5wsb53zw12znmw855xas26spsy"; depends=[coda ergm Matrix matrixcalc MCMCpack mvtnorm network Rglpk statnet_common]; }; + Bergm = derive2 { name="Bergm"; version="5.0.7"; sha256="13wdkbjnqj3dk8fpk8vblkf4z79j87gdszjdzwysq9i10l6yl6ir"; depends=[coda ergm Matrix matrixcalc MCMCpack mvtnorm network Rglpk statnet_common]; }; Bernadette = derive2 { name="Bernadette"; version="1.1.4"; sha256="11p0mn6m1h0h203wxsdgpnzjxh5r3ak5xfvy4s4axm2g449wnmia"; depends=[BH ggplot2 gridExtra magrittr Rcpp RcppEigen RcppParallel rstan rstantools scales StanHeaders]; }; Bessel = derive2 { name="Bessel"; version="0.6-0"; sha256="0iwm08nhlivi4zwcqdi296a1l4n4lfanfxhaysh9vcsyk1kpiacf"; depends=[Rmpfr]; }; Bestie = derive2 { name="Bestie"; version="0.1.5"; sha256="1j3xnwq9faim8cjb6cz54mix7ly8dzxa5qsdglcgl2gfbvzbb9s1"; depends=[BiDAG mvtnorm Rcpp]; }; @@ -501,10 +519,9 @@ in with self; { BeyondBenford = derive2 { name="BeyondBenford"; version="1.4"; sha256="04jdx35955g44v2is6zxfw1gip7zh3li8divc7iy5hl0jrshfhv3"; depends=[ggplot2]; }; Bhat = derive2 { name="Bhat"; version="0.9-12"; sha256="0jrn57v90anxsdasfwn3c4mxwzz8b5nbvsn5c57d71xfdza4lh6f"; depends=[MASS]; }; BiBitR = derive2 { name="BiBitR"; version="0.3.1"; sha256="0wfwph6nw12hb43j14i9ycj8m2zn0m5ynp7afq9cray8rbgvxfv6"; depends=[biclust cluster dendextend foreign lattice randomcoloR viridis]; }; - BiCausality = derive2 { name="BiCausality"; version="0.1.3"; sha256="063qf3vfwxn0xp4j7rs4rz4zqhp2al5r3yhkw5lvf1882b3dqmis"; depends=[]; }; + BiCausality = derive2 { name="BiCausality"; version="0.1.4"; sha256="0ryzq77j8sbic5mj8r6bpirnr2vb45wwkkkkkjmv70c15ip5409r"; depends=[]; }; BiDAG = derive2 { name="BiDAG"; version="2.1.4"; sha256="0gncxn558mdasr63jvqyavd6nhg6762rk0g0a2b7hfvcivjb6bd5"; depends=[coda graph Matrix pcalg RBGL Rcpp Rgraphviz]; }; BiDimRegression = derive2 { name="BiDimRegression"; version="2.0.1"; sha256="00zcvk5v8rn3dp02sivs5z7cch9y8csp5cjhhs4ragdgcry0c3i5"; depends=[Formula]; }; - BiProbitPartial = derive2 { name="BiProbitPartial"; version="1.0.3"; sha256="0y19b8bkwr7rpygmj03013slmfbyd7aj6714hm14w5rdbnckymw3"; depends=[coda Formula mvtnorm numDeriv optimr pbivnorm Rcpp RcppArmadillo RcppTN]; }; BiSEp = derive2 { name="BiSEp"; version="2.2"; sha256="1ha7rc1q54dr2xl4bpkiwl703igmmi9qphsgv2h0flq7iz0gr351"; depends=[AnnotationDbi GOSemSim mclust]; }; BiTrinA = derive2 { name="BiTrinA"; version="1.3.1"; sha256="09x3w3njdm7pgjjcqc1g3lp8nj31qkq3hmn21dqgvq7acyblan08"; depends=[diptest]; }; BiasCorrector = derive2 { name="BiasCorrector"; version="0.2.2"; sha256="0a6iiy4iw8w8s4kbjf6r0gji6izf1zdb99r8vfbvgzzwg2pxx4h4"; depends=[data_table DT magrittr rBiasCorrection shiny shinydashboard shinyjs]; }; @@ -526,7 +543,7 @@ in with self; { BinarybalancedCut = derive2 { name="BinarybalancedCut"; version="0.2"; sha256="1rs7x7ggqzaz9r2912g0fi9x7przd8gjy6pianx457w5f39fqx4v"; depends=[ggplot2 reshape2]; }; BioCircos = derive2 { name="BioCircos"; version="0.3.4"; sha256="1gl57r47p5z1wzs94xzc26j2r8z5hpqr4163b01x6jwzvbrlfwhz"; depends=[htmlwidgets jsonlite plyr RColorBrewer]; }; BioInsight = derive2 { name="BioInsight"; version="0.3.1"; sha256="129w9643l01y316hm0qcsmxzh5lsdmq6xmiz4rhmdh0dcnw2s93n"; depends=[edgeR knitr limma RColorBrewer wordcloud]; }; - BioM2 = derive2 { name="BioM2"; version="1.0.1"; sha256="06fcn3pizw0jp4m195ac9gf3d1jr8sp3r2fiq68lwmv7vi6ngcxs"; depends=[caret CMplot dplyr ggplot2 ggpubr ggthemes htmlwidgets jiebaR mlr3 mlr3verse RColorBrewer ROCR tm uwot webshot WGCNA wordcloud2]; }; + BioM2 = derive2 { name="BioM2"; version="1.0.2"; sha256="065k0z1wgg1yf0xvcp3n0zpbfnlpi9pd4g34k3sk63z3l2s54hym"; depends=[caret CMplot ggnetwork ggplot2 ggpubr ggstatsplot ggthemes htmlwidgets igraph intergraph jiebaR mlr3 mlr3verse RColorBrewer ROCR uwot viridis webshot WGCNA wordcloud2]; }; BioMark = derive2 { name="BioMark"; version="0.4.5"; sha256="1ifc72bayy3azbilajqqzl0is6z7l1zaadchcg3n8lhmjrv5sk3m"; depends=[glmnet MASS pls st]; }; BioPET = derive2 { name="BioPET"; version="0.2.2"; sha256="0zgq7i37d0rnjhlkcrl44x62vhz0njsv2fldm64j9r4wc02z1q9n"; depends=[ggplot2 gridExtra pROC VGAM]; }; BioPETsurv = derive2 { name="BioPETsurv"; version="0.1.0"; sha256="0svwf8pzvlmlp8aacf70hzlg2h81m6lyhh4p73ixqw5v9bnyq6m0"; depends=[ggplot2 gridExtra survival]; }; @@ -541,8 +558,8 @@ in with self; { Bioi = derive2 { name="Bioi"; version="0.2.10"; sha256="1ay8889490nfhxhh72fvk9z4h58xknm2b145xhbx2wbzj65zf9ib"; depends=[assertthat dplyr igraph Rcpp]; }; Bios2cor = derive2 { name="Bios2cor"; version="2.2.1"; sha256="0xj7ab9a463p4a67y0hlv6mfd08xf8didkn2mwrfa7gxjqqvix4z"; depends=[bigmemory bio3d circular igraph]; }; Biostatistics = derive2 { name="Biostatistics"; version="1.0.4"; sha256="1fcrj53rqg7mdhrrsl95l0n6hycb0863isch2f6zzsqdqbxhq7dh"; depends=[learnr]; }; + BiostatsUHNplus = derive2 { name="BiostatsUHNplus"; version="0.0.9"; sha256="0bgclpw0k2bdwrb785qhk490fxcb14r1cbm05zhb41mddw8zbqkk"; depends=[afex coda cowplot dplyr forcats ggh4x ggplot2 ggstance lifecycle MCMCglmm modeest openxlsx plyr purrr reportRmd rlang rstatix stringr tibble]; }; BipartiteModularityMaximization = derive2 { name="BipartiteModularityMaximization"; version="1.23.120.1"; sha256="0pz9cyg3avngxgd7ys5a1pfw4jw4cxbq36nh9hjarisl5phk761b"; depends=[Rcpp]; }; - BiplotML = derive2 { name="BiplotML"; version="1.1.0"; sha256="1wrn3bz3lwh05fs97m4zq12xy7vgkwb9kn4xvx5kfiipps1kqw8s"; depends=[optimr optimx shapes]; }; BisRNA = derive2 { name="BisRNA"; version="0.2.2"; sha256="11jl5109nlm272vncprwplkz4kpvg7yx6yfnbjg47lfrsxcj8n0g"; depends=[MASS]; }; BisqueRNA = derive2 { name="BisqueRNA"; version="1.0.5"; sha256="0p3p5lp69gri7vs6qfpm7br4ksbs4l7clm4nj8ki99wpqiqni23n"; depends=[Biobase limSolve]; }; BivGeo = derive2 { name="BivGeo"; version="2.0.1"; sha256="1sj52v1zmk425jw9acq9y0jdp3agx103yzf1bjbc5vrmk1x0i0qr"; depends=[]; }; @@ -553,7 +570,6 @@ in with self; { BlackCarbon = derive2 { name="BlackCarbon"; version="0.1.0"; sha256="19ll2lcdxj5bmgh4wyk47ddxpwrqdiy67wsvj7mi1vm7y5ccyfhn"; depends=[]; }; BlakerCI = derive2 { name="BlakerCI"; version="1.0-6"; sha256="0dcmnaf0k195caajy8h4qymyfj45cjwmkcgsbwv0z7x3h9sx5k6v"; depends=[]; }; BlandAltmanLeh = derive2 { name="BlandAltmanLeh"; version="0.3.1"; sha256="11p30zqb3f9ifk3v18dspg18sclz5zxjygy7hw8ccb4bcqhx68lm"; depends=[]; }; - BlanketStatsments = derive2 { name="BlanketStatsments"; version="0.1.2"; sha256="00zh3ivqrzlz6wz0nalmdqp8pfki3kkxm9idh2ri6sfxsb6kfdp6"; depends=[assertive_types basecamb DescTools Hmisc survAUC survival]; }; Blaunet = derive2 { name="Blaunet"; version="2.2.1"; sha256="070vqkd24ydzs277acpwcqay8nrp3ip1wf2zkdkg1qc2crip86hs"; depends=[digest ergm foreign gWidgets2 gWidgets2tcltk haven network plot3D plot3Drgl rgl sna statnet_common]; }; Blendstat = derive2 { name="Blendstat"; version="1.0.4"; sha256="0nh5nq8g009vbb4mmjcrhg46yi77dk1gza4si21m58b26qf5riy5"; depends=[lattice MASS]; }; BlockCov = derive2 { name="BlockCov"; version="0.1.1"; sha256="1ilqd8kvhlq0nc1n4y7g0aiwran3kyqs8i143j6dv2wy3myn5x0l"; depends=[BBmisc dplyr magrittr Matrix Rdpack rlang tibble]; }; @@ -571,8 +587,8 @@ in with self; { BoneProfileR = derive2 { name="BoneProfileR"; version="2.4"; sha256="0mm2vjg43p9abfydaw7qw0q9cwpvzxic914rpdk2dshyva6dxyx5"; depends=[HelpersMG imager knitr rmarkdown shiny]; }; BoolFilter = derive2 { name="BoolFilter"; version="1.0.0"; sha256="14z4fzf8p4wgi939qs6v39a3xizccjcx7j4szsydllpkvxbwggbw"; depends=[BoolNet Rlab]; }; BoolNet = derive2 { name="BoolNet"; version="2.1.9"; sha256="19xnmz5dq8lvk1va8zi931xkawkwfcfjf4vh0dsg5n8zhy4p321f"; depends=[igraph XML]; }; - Boom = derive2 { name="Boom"; version="0.9.11"; sha256="17kp3vla2z9kgcqgwcslcp0wl7k1k2rbc8nr3b785hv23gww11bi"; depends=[MASS]; }; - BoomSpikeSlab = derive2 { name="BoomSpikeSlab"; version="1.2.5"; sha256="1y1bn9490g3qvvjvxk8sc0312hmzwj0n5rg9fsa7k4av0yasv25w"; depends=[Boom]; }; + Boom = derive2 { name="Boom"; version="0.9.14"; sha256="103x5hxmnb1zvq47hixmkk8070k6wyxswiyfmvyn0kd0nij1sb91"; depends=[MASS]; }; + BoomSpikeSlab = derive2 { name="BoomSpikeSlab"; version="1.2.6"; sha256="0gn6fb68hk0kzpa4mp4465rsbk37fkq7nnx6bvd5bhhk1zi25xl7"; depends=[Boom]; }; BoostMLR = derive2 { name="BoostMLR"; version="1.0.3"; sha256="0gk8jf04qda1qsc6987d8nfa453v9cqkjsvvrrg68yx3fd96m8aj"; depends=[nlme Rcpp RcppArmadillo]; }; BootMRMR = derive2 { name="BootMRMR"; version="0.1"; sha256="07am80603pv1dh5ma3zb0idnslkzm5m3ym8sd1nhkh8zbc6qqmzs"; depends=[]; }; BootPR = derive2 { name="BootPR"; version="1.0"; sha256="11cpg3klm5qk7447wnwhfv1kg0r3kqr0m4vvwkv1jll5v9zkq7h7"; depends=[]; }; @@ -583,12 +599,12 @@ in with self; { BosonSampling = derive2 { name="BosonSampling"; version="0.1.5"; sha256="059g4sl7c2cns729sssv1syj0zx8rs8wbjfsc761fxl435ca7hqk"; depends=[Rcpp RcppArmadillo]; }; BoundEdgeworth = derive2 { name="BoundEdgeworth"; version="0.1.2.1"; sha256="03gqm9afqv7z176f9yv5vxf0r4v0bq1zs8rfwfld38mk66sfb2m1"; depends=[expint mathjaxr]; }; BoundaryStats = derive2 { name="BoundaryStats"; version="2.1.1"; sha256="06kz1d5fwiilqidiz2iry0fg7c5265fc40yrdgddd0aia75cf9jv"; depends=[fields ggplot2 igraph magrittr pdqr rgeoda scales sf terra tibble]; }; - BoutrosLab_plotting_general = derive2 { name="BoutrosLab.plotting.general"; version="7.0.8"; sha256="1za211paw4k586z6s92rwh2z7vjn3aqgja43b2zd5z6swg3ibhsv"; depends=[cluster e1071 gridExtra gtable hexbin lattice latticeExtra MASS]; }; + BoutrosLab_plotting_general = derive2 { name="BoutrosLab.plotting.general"; version="7.1.0"; sha256="1rmd050sla0d3m2q4cadw84v7p9v05v0ifcbzind771sibr3vcji"; depends=[cluster e1071 gridExtra gtable hexbin lattice latticeExtra MASS]; }; BradleyTerry2 = derive2 { name="BradleyTerry2"; version="1.1-2"; sha256="0vss3ib74cz2zn1afmrvllawghj9z2ay4x1ysvk4rqvjmiia4a2i"; depends=[brglm gtools lme4 qvcalc]; }; BrailleR = derive2 { name="BrailleR"; version="1.0.2"; sha256="1gh4n9zl7yczmhy85xmsx1mh9qmc99xvhmm5cdnjcb644i2n214k"; depends=[devtools dplyr extrafont ggplot2 gridGraphics gridSVG hunspell knitr mathjaxr moments quarto Rdpack rmarkdown roloc rolocISCCNBS tidyr whisker XML xtable]; }; BrainCon = derive2 { name="BrainCon"; version="0.3.0"; sha256="137pagkjb4xzk3skmsf5vlp8q0k79zl9xjz8wwda1mdrknkdnbj6"; depends=[glmnet MASS]; }; - BranchGLM = derive2 { name="BranchGLM"; version="2.1.2"; sha256="1rg5pylkqbmsq6kwjw710rgydw8xg8l2c3bqhpn5j53lcprclaqs"; depends=[BH Rcpp RcppArmadillo]; }; - Branching = derive2 { name="Branching"; version="0.9.4"; sha256="1c209gdasm7qipv2gg4d1hr0jmhnzz5rddgjxb7xacazc0c2mhff"; depends=[]; }; + BranchGLM = derive2 { name="BranchGLM"; version="2.1.3"; sha256="04s0r078cfx2wbn0m3blx1krbw9m4nd7jp6fd4dhfyq4grd4y4ny"; depends=[BH Rcpp RcppArmadillo]; }; + Branching = derive2 { name="Branching"; version="0.9.6"; sha256="0kjinxyryaima4in1jawdp963sf10sxm3qq0jb0z95ycj4x2dls9"; depends=[]; }; BrazilMet = derive2 { name="BrazilMet"; version="0.2.0"; sha256="0pcr665j4balmcm4sq6l19nmhpbs7ayw5dljsdxr91bn6srb33b3"; depends=[dplyr readxl stringr]; }; BreakPoints = derive2 { name="BreakPoints"; version="1.2"; sha256="125fvzkmfnriyd4y4nywj5ihm766xlsyi7dpnq57fa9d38ffbyf2"; depends=[MASS zoo]; }; Brobdingnag = derive2 { name="Brobdingnag"; version="1.2-9"; sha256="07p9416rdzfyiigbglxjpbcg7pfly9nw19yn2mwg98621cjjs0gr"; depends=[Matrix]; }; @@ -611,15 +627,16 @@ in with self; { CACIMAR = derive2 { name="CACIMAR"; version="1.0.0"; sha256="0fdi2ls0j10fky3jygqx93h8m1957cdbn1vxdi69bq08xf2c5n5h"; depends=[dplyr pbapply pheatmap psych reshape2 ROCR Seurat viridisLite]; }; CADFtest = derive2 { name="CADFtest"; version="0.3-3"; sha256="06bwv728ckalzibxginzfica24w18m4g87i0i064m3q89ghmnlqm"; depends=[dynlm sandwich tseries urca]; }; CADStat = derive2 { name="CADStat"; version="3.0.8"; sha256="0wdglw1vyd5gz70r9ma0mwshvizv39nb4ahp8pvr70c4qqzsfhc0"; depends=[bio_infer car gdata gmodels JavaGD JGR lattice MASS quantreg rJava rpart XML]; }; + CAGR = derive2 { name="CAGR"; version="0.1.0"; sha256="1b01kzs36q6i0l47qy5krlc2whxqlq8xhdllghw7sff560ikng7d"; depends=[]; }; CAISEr = derive2 { name="CAISEr"; version="1.0.17"; sha256="01gxxq9bfrrishzawmqh47byhc3szfss9bmcsh1p2gi9ml6aqcay"; depends=[assertthat ggplot2 gridExtra pbmcapply]; }; CALANGO = derive2 { name="CALANGO"; version="1.0.16"; sha256="1rs992i6xmisx180yyc6z7qlig9a4kj7r3vr5ysf6kcgycj72nj1"; depends=[ape assertthat BiocManager dendextend DT ggplot2 heatmaply htmltools htmlwidgets knitr nlme pbmcapply pkgdown plotly rmarkdown taxize]; }; CALF = derive2 { name="CALF"; version="1.0.17"; sha256="021x1gp0493g6qnfih755c0xcddz77i3p22bgjlx1lpzgqmrgrki"; depends=[data_table ggplot2]; }; CALIBERrfimpute = derive2 { name="CALIBERrfimpute"; version="1.0-7"; sha256="1fspn6wgr0kc7j4ixx24c706kzrgjhi1b1w28izpfxm4r89zk08s"; depends=[mice mvtnorm randomForest]; }; CAMAN = derive2 { name="CAMAN"; version="0.78"; sha256="10llppi2k3jq36mpig2djaf5kdx3ils2i1zvcypdry8xpkz80h9l"; depends=[mvtnorm sp]; }; - CAMML = derive2 { name="CAMML"; version="0.2.3"; sha256="0qzp5hmsrq89jvizsvjrp1q01f9nc3fbn7ka964xp75f6pvckph6"; depends=[AnnotationDbi BiocManager edgeR MASS Matrix org_Dr_eg_db org_Hs_eg_db org_Mm_eg_db Seurat SeuratObject VAM]; }; + CAMML = derive2 { name="CAMML"; version="1.0.0"; sha256="0h2wfbafgcci1rrdq6qc634nf0d1h47ccajziifg1fhk7m8s56i7"; depends=[AnnotationDbi BiocManager edgeR MASS Matrix org_Dr_eg_db org_Hs_eg_db org_Mm_eg_db Seurat SeuratObject VAM]; }; CANSIM2R = derive2 { name="CANSIM2R"; version="1.14.1"; sha256="1dnzbd9lyqj3w80lx12qxcsbmv8wy6hxknyi5ijp99cfv7kaq1kc"; depends=[downloader Hmisc reshape2]; }; - CARBayes = derive2 { name="CARBayes"; version="6.0"; sha256="17y97czha0vnn21cwbmci6cfp4r0k453hg7jdhg1n4c1nl5x6r0y"; depends=[CARBayesdata coda dplyr GGally mapview MASS MCMCpack RColorBrewer Rcpp sf spam spdep truncnorm]; }; - CARBayesST = derive2 { name="CARBayesST"; version="3.3.1"; sha256="1qv5781f8bbwka86ypdfjc4ywg1x4zx8i58bx6lw2hbw42lq6ajy"; depends=[CARBayesdata coda dplyr GGally ggplot2 gridExtra gtools leaflet MASS matrixStats MCMCpack Rcpp sf spam spdep truncdist truncnorm]; }; + CARBayes = derive2 { name="CARBayes"; version="6.1"; sha256="1c12alvizps18jpwn57h5afny13c0aspawlmc7af4lm58m0i2ya1"; depends=[CARBayesdata coda dplyr GGally glmnet igraph mapview MASS MCMCpack RColorBrewer Rcpp sf spam spdep truncnorm]; }; + CARBayesST = derive2 { name="CARBayesST"; version="4.0"; sha256="0wrxpx4zrlndyp74iwrr6bny2l31a333a6nmk3dzi7j3skaj7zf5"; depends=[CARBayesdata coda dplyr GGally ggplot2 gridExtra gtools leaflet MASS matrixStats MCMCpack Rcpp sf spam spdep truncdist truncnorm]; }; CARBayesdata = derive2 { name="CARBayesdata"; version="3.0"; sha256="03m0r6n10ssljhliipvslwxgcpv0whvlj27d7awa7sp37j3aafx5"; depends=[sf]; }; CARM = derive2 { name="CARM"; version="1.1.0"; sha256="068rpz7bjc767yw4vcrf63ckyvdk2f1kskmfcc7955qf9ki5c49c"; depends=[arrangements dplyr MASS]; }; CARME = derive2 { name="CARME"; version="0.1.1"; sha256="0nam14g052swb44sw07as4agk0z47f7mc1kqlj0z9m1ywsbisnpl"; depends=[BH expm MASS Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; @@ -627,8 +644,8 @@ in with self; { CARlasso = derive2 { name="CARlasso"; version="0.1.2"; sha256="05r5n5bh0fpwfigr6czh9pg29zyrw73idfvs9qm8vr3dvcmvc42r"; depends=[coda ggplot2 ggraph igraph MASS Matrix Rcpp RcppArmadillo RcppProgress]; }; CASCORE = derive2 { name="CASCORE"; version="0.1.2"; sha256="1ns20gxm7a4n2h6zdysz4p7pij5mivhdj2ssccdy36g1lihgjz8q"; depends=[pracma]; }; CASMAP = derive2 { name="CASMAP"; version="0.6.1"; sha256="1447d4gflan2093fb68inb2ysx5svb9vhnjc7lnkgpjsiam4p8yy"; depends=[Rcpp]; }; - CASMI = derive2 { name="CASMI"; version="1.1.1"; sha256="14kg6fs7s3bqmz1a7mmk6dvpfl4nsk7373b4596yi0p7zfgp6lmj"; depends=[entropy EntropyEstimation]; }; - CAST = derive2 { name="CAST"; version="0.8.1"; sha256="1c38zq5h4f123kr4dx3nq3zcvys7jq6srpksm49jzv9yf2bnhf3k"; depends=[caret data_table FNN ggplot2 lattice plyr zoo]; }; + CASMI = derive2 { name="CASMI"; version="1.2.0"; sha256="1mpqjspl5ly0p6qpvcpx77a4x85f3531567blhkrf5iycdygfyvz"; depends=[entropy EntropyEstimation]; }; + CAST = derive2 { name="CAST"; version="0.9.0"; sha256="046pgl83bld4590yfvj1zx09f8yp1dlc2x9n347zx6cap58dabfz"; depends=[caret data_table FNN forcats ggplot2 lattice plyr sf zoo]; }; CATT = derive2 { name="CATT"; version="2.0"; sha256="12xdspl1gbf51snyrl44nn7alfyccdfihibkgvzr66lrby8b8fhg"; depends=[]; }; CATTexact = derive2 { name="CATTexact"; version="0.1.1"; sha256="07ciln6cfvqya7dwwn6mhd9lk2833hypm4badizgfi2k749d1p00"; depends=[]; }; CAinterprTools = derive2 { name="CAinterprTools"; version="1.1.0"; sha256="07rvi91ysqyfwagmip0cnqjahv1n8slicd5hznqf5v3l841xh7p7"; depends=[ca classInt cluster FactoMineR ggplot2 ggrepel Hmisc RcmdrMisc reshape2]; }; @@ -642,18 +659,20 @@ in with self; { CCA = derive2 { name="CCA"; version="1.2.2"; sha256="0r1f7m64608hq6bpw36wsw6fr4s8bj26x4062brqgn5dbpqlgczk"; depends=[fda fields]; }; CCAMLRGIS = derive2 { name="CCAMLRGIS"; version="4.0.6"; sha256="1gbrrsxyfykzpng02sxk07j9afs1w550xawvaw7qrzx9yhr660qc"; depends=[bezier dplyr lwgeom magrittr sf stars terra]; }; CCM = derive2 { name="CCM"; version="1.2"; sha256="1mhl7yppniybdffylddbbb65n7gmv029fb46wlsxm4yf2xkplmwy"; depends=[]; }; - CCMMR = derive2 { name="CCMMR"; version="0.1"; sha256="0d8fbgnjvy4bh1msbvm125q2v9j3h7zdnijdhi222hcpkvax5z8b"; depends=[r2r RANN Rcpp RcppEigen]; }; + CCMMR = derive2 { name="CCMMR"; version="0.2"; sha256="0y1lfjicyw0gs2r5nrqhkzyzkdbs6brdrzgc98k5fam79nj7kcbv"; depends=[r2r RANN Rcpp RcppEigen]; }; CCP = derive2 { name="CCP"; version="1.2"; sha256="067nf1gag3ya7v9vzcpvallga5dr243q0q07fd370k0zynmhcfby"; depends=[]; }; CCTpack = derive2 { name="CCTpack"; version="1.5.2"; sha256="1kkxsk9x4jz2bvldmba7fsri3zc1cjz15z0xicjmfc7lj72ngdig"; depends=[MASS mvtnorm polycor psych R2jags rjags]; }; CCWeights = derive2 { name="CCWeights"; version="0.1.6"; sha256="0in3pl1n48jal6f7kiyw60by11vbga8vr45x0wywghd7dz60ppfv"; depends=[bs4Dash dplyr DT fresh magrittr plotly readr readxl rmarkdown shiny]; }; + CDCPLACES = derive2 { name="CDCPLACES"; version="1.1.1"; sha256="0rxyfac56y8jmr8bqmmslkqw2xmjxh9y8m3fm062yapha5c0bnm7"; depends=[dplyr httr2 jsonlite tidyr]; }; CDFt = derive2 { name="CDFt"; version="1.2"; sha256="19axaf3bh9gasnsfamd5ych1jn751scaplgwpmsf3liazcqqpa61"; depends=[]; }; CDM = derive2 { name="CDM"; version="8.2-6"; sha256="1lcq3i5rlyqkc12c26kj0x4fm2gh1jsisp6kbf59y3hjdkiqajhl"; depends=[mvtnorm polycor Rcpp RcppArmadillo]; }; - CDMConnector = derive2 { name="CDMConnector"; version="1.1.4"; sha256="1xsajmg4k526dr4nkrrhvgi9shd8j8b1s0fkbn4lc797ljyv6gka"; depends=[checkmate cli DBI dbplyr dplyr fs generics glue jsonlite lifecycle pool purrr readr rlang stringi stringr tidyr tidyselect waldo withr]; }; + CDMConnector = derive2 { name="CDMConnector"; version="1.2.0"; sha256="1sx3n6vbps0843a00wzqfmjl9qhxn51saxsk75lqn8gaxas40823"; depends=[checkmate cli DBI dbplyr dplyr fs generics glue jsonlite lifecycle pool purrr readr rlang stringi stringr tidyr tidyselect waldo withr]; }; CDNmoney = derive2 { name="CDNmoney"; version="2012.4-2"; sha256="1isbvfq0lygs75y1hn3klqms8q7g1xbkcr8fgj75h1c99d4khvm6"; depends=[]; }; + CDSE = derive2 { name="CDSE"; version="0.1.0"; sha256="0pysz1vcmi051qhdmmyp4ynnhpb4lj7qbjb80k16z9xnmd5h58bk"; depends=[geojsonsf httr2 jsonlite lubridate lutz sf terra]; }; CDSS = derive2 { name="CDSS"; version="0.2-0"; sha256="13p5vg07lv1vbwpsd33x4mc8pvwf6s6yqikrbyakrfsjlznzw5gj"; depends=[openxlsx readODS]; }; CDVineCopulaConditional = derive2 { name="CDVineCopulaConditional"; version="0.1.1"; sha256="1wyy324vrwipdsq0p021bj1gdhyxg09g3dkw8wv5v6rfrrs84m9k"; depends=[combinat VineCopula]; }; CDatanet = derive2 { name="CDatanet"; version="2.1.2"; sha256="0lg6sfzi17xlfm2l7mgcw3p0ii3acc4vl38kadvzmb5720jvvj5r"; depends=[ddpcr Formula formula_tools Matrix Rcpp RcppArmadillo RcppDist RcppEigen RcppNumerical RcppProgress]; }; - CEC = derive2 { name="CEC"; version="0.11.0"; sha256="0qa46iq3m510sjb3ap4m5lkaajk15vi3xjwqgnpdw0jh0m0vkabf"; depends=[]; }; + CEC = derive2 { name="CEC"; version="0.11.1"; sha256="02jk68lxx1gszpi7awi6c1qvc4bsjz8bjxq4rdka9fxj7ql27raf"; depends=[]; }; CEDA = derive2 { name="CEDA"; version="1.1.0"; sha256="1m03l552zql3cqra1r1zdjcw6abpfdhvn3dkbhdhmnmg59fb6bfb"; depends=[dplyr ggplot2 ggprism ggridges ggsci limma mixtools]; }; CEEMDANML = derive2 { name="CEEMDANML"; version="0.1.0"; sha256="0hc5sx1zvxj3j5psgcgzhw6l9zrvbbsnpw6qr7ww82bjjr3wbi3c"; depends=[aTSA caret e1071 earth fGarch FinTS forecast LSTS neuralnet pso Rlibeemd tseries]; }; CEGO = derive2 { name="CEGO"; version="2.4.2"; sha256="00nc6c1b6ylqlh6hm8lh8nasz7q12pqckdqbf1yq21khki9ldbll"; depends=[DEoptim fastmatch MASS Matrix ParamHelpers quadprog]; }; @@ -664,7 +683,7 @@ in with self; { CFC = derive2 { name="CFC"; version="1.2.0"; sha256="16abn3ydixb819qyyrs351d8v6qaaaz1gif0yfd8gdh7xnr2qzpy"; depends=[abind doParallel foreach Rcpp RcppArmadillo RcppProgress survival]; }; CFF = derive2 { name="CFF"; version="1.0"; sha256="04z3q0s4b1yns5l7lplw8qrcdjzsdy9crnhakyzd6r449hjfsvnz"; depends=[]; }; CFilt = derive2 { name="CFilt"; version="0.2.1"; sha256="1iah41s0pd8s4vmg7r6npsgmfr6mvyp5wfnyimx51fqr2f3narwf"; depends=[]; }; - CFtime = derive2 { name="CFtime"; version="1.1.0"; sha256="1lrzx3rxipfyjbfjic9c80pmbgfldbgyhz823v04761h6jplpp9i"; depends=[]; }; + CFtime = derive2 { name="CFtime"; version="1.2.0"; sha256="0ywqps6p53nyy5x4qvyki94gmk5ax30b3qpcjrby4aixdr8ns85h"; depends=[]; }; CGE = derive2 { name="CGE"; version="0.3.3"; sha256="0q1fv62159cx9z25488fxf6a6fi1m59hdh60ldypsjwil77q0s3i"; depends=[]; }; CGGP = derive2 { name="CGGP"; version="1.0.3"; sha256="1g70hjpc33dnr6yw42kjhy9ngba05qzk5mr7md6pqhmbx0ykhr6g"; depends=[Rcpp RcppArmadillo]; }; CGManalyzer = derive2 { name="CGManalyzer"; version="1.3.1"; sha256="1hg8svdqq0xgdxvry5agwvz2jlx6d0vazny9kdxwxlg4wnydai2f"; depends=[]; }; @@ -674,14 +693,13 @@ in with self; { CHEMIST = derive2 { name="CHEMIST"; version="0.1.5"; sha256="00alby5x01a2izmzk0ilkx5jgkwavsaj18w3kra444pib0ncrl92"; depends=[LaplacesDemon MASS XICOR]; }; CHFF = derive2 { name="CHFF"; version="0.1.0"; sha256="0jv75p1bnwsad2vpxf1zwq97al9xxhk2hpnpsilf0jn0w7g9b2d3"; depends=[]; }; CHMM = derive2 { name="CHMM"; version="0.1.1"; sha256="07fdvnwhblwvljbl2z0vs42nwki67yl5ly3fj40p50k3rnqqmavj"; depends=[mclust]; }; - CHNCapitalStock = derive2 { name="CHNCapitalStock"; version="0.1.0"; sha256="1w8abj1rxkpql696dr6w19xsgxjmkm0jwnln7lp48fnxdsa424x8"; depends=[dplyr magrittr]; }; + CHNCapitalStock = derive2 { name="CHNCapitalStock"; version="0.1.1"; sha256="0hldv4mbsr0y9r34f7b5zpdr2bl77vnsd2d9lfajd2bqnjqzv38d"; depends=[dplyr]; }; CHNOSZ = derive2 { name="CHNOSZ"; version="2.0.0"; sha256="02srw868nvi4cs147gz2vm02gghibh1d2r31x7ljj6fcc66z4g9y"; depends=[]; }; CHOIRBM = derive2 { name="CHOIRBM"; version="0.0.2"; sha256="1ak9swfnc0i23pv6mg5bav09pb7v0afdr7h08s1pyd77wyzf95df"; depends=[ggplot2 rlang stringr]; }; CIAAWconsensus = derive2 { name="CIAAWconsensus"; version="1.3"; sha256="0yhay4fp5lyf0sdcf807yvys17qz9cr5f5ikim25mq336p7fp03x"; depends=[Matrix mvtnorm numDeriv stringr]; }; CIARA = derive2 { name="CIARA"; version="0.1.0"; sha256="0nr7wks9231326x0lhpbh824c6vcb5hr5jn89s9bmg9mci907bsf"; depends=[Biobase ggplot2 ggraph magrittr]; }; CICA = derive2 { name="CICA"; version="1.0.1"; sha256="0b1q1np2sqjq7ijnm196nj86vz35ngbifpzy0qws2yxbsjf8xzf0"; depends=[htmltools ica magrittr mclust multiway neurobase oro_nifti plotly RNifti servr]; }; CICI = derive2 { name="CICI"; version="0.9.1"; sha256="0dd152f3ffasmwrhjgkd4i480cp2jkp2qy7w22xbzjm3c22mpbvz"; depends=[doParallel doRNG foreach ggplot2 glmnet mgcv rngtools]; }; - CIDER = derive2 { name="CIDER"; version="0.99.1"; sha256="0ag2gyrjjyq4r4xssmz05cg1sh8mmq54d5mynhwm5k53zcpk8i8r"; depends=[dbscan doParallel edgeR foreach ggplot2 igraph kernlab limma pheatmap Seurat viridis]; }; CIEE = derive2 { name="CIEE"; version="0.1.1"; sha256="03kq9cp0v41y0r2l9j5imcrsail2xsvlzhhhsrw454d4s9gqdql9"; depends=[survival]; }; CIM = derive2 { name="CIM"; version="1.0.0"; sha256="02l8rspiiv6vj6k0q6wpiazny3f2s4dsivsm7zb9cm90qh1rv2d7"; depends=[]; }; CIMTx = derive2 { name="CIMTx"; version="1.2.0"; sha256="1jx99vh620zqwp7p4bjcxa3n0kg6w6q88kklv9f9x44894mrd56a"; depends=[arm BART cowplot doParallel dplyr foreach ggplot2 magrittr Matching metR mgcv nnet stringr SuperLearner tidyr tmle twang WeightIt]; }; @@ -692,7 +710,7 @@ in with self; { CIPerm = derive2 { name="CIPerm"; version="0.2.3"; sha256="1arb9jswnjmw8fgabwn3ap5wi57rwgh6dnq9c19v1qbcx8lhzs7c"; depends=[matrixStats]; }; CIS_DGLM = derive2 { name="CIS.DGLM"; version="0.1.0"; sha256="0c7jxfb8gaklf6p83152wb2nszm2p806p3n523xajf4ha368d3kq"; depends=[dglm dplyr ggplot2 RColorBrewer]; }; CITAN = derive2 { name="CITAN"; version="2022.1.1"; sha256="09m9f6s9y7ygbixcymg93vsrqz5jsjp968cjhxnj1v73hzalk168"; depends=[agop DBI RSQLite stringi]; }; - CIfinder = derive2 { name="CIfinder"; version="1.0.1"; sha256="0h3f78rfrsqwgcfhpn1sbwjawnna55i05gdfbrgawxhzp8gxv4fm"; depends=[kableExtra ratesci Rdpack]; }; + CIfinder = derive2 { name="CIfinder"; version="1.0.2"; sha256="0if3jsg5gr3dxz0ggg0zhk682h3c7hqv76xc4shgknh8vqc2njv8"; depends=[kableExtra ratesci Rdpack]; }; CIplot = derive2 { name="CIplot"; version="1.0"; sha256="0hx3dn7d8hvsh75747d9046iqriy3bjnchph8xllnvlhkrm4di1f"; depends=[MASS multcomp]; }; CJAMP = derive2 { name="CJAMP"; version="0.1.1"; sha256="0caznbqy5hsp7h0gkdbv966vfpq8z1khvbizi4vpc9mxck1nqc99"; depends=[optimx]; }; CJIVE = derive2 { name="CJIVE"; version="0.1.0"; sha256="1937q125w39rsl2i5imqlk25r7mr1hvpmjy2br0xq98vdkxazqsq"; depends=[fields ggplot2 gplots psych reshape2 rootSolve]; }; @@ -703,6 +721,7 @@ in with self; { CLAST = derive2 { name="CLAST"; version="1.0.1"; sha256="10g07jdnmbjk5k5xy4c8jh45aw16bjdwik91djiml82ysnbqiq9y"; depends=[]; }; CLME = derive2 { name="CLME"; version="2.0-12"; sha256="161maq22r8wbd6c2dc8b47mh6991vc4iqmjr8g6yqb5gcwca8zhg"; depends=[isotone lme4 MASS nlme openxlsx prettyR shiny stringr]; }; CLONETv2 = derive2 { name="CLONETv2"; version="2.2.1"; sha256="1axkkagydpxdrz7ypw3x7bavaxk34lzj9bsdn1nah9nfr3cdia6h"; depends=[arules dbscan ggplot2 ggrepel sets]; }; + CLSIEP15 = derive2 { name="CLSIEP15"; version="0.1.0"; sha256="0qh9rlw89sjjmidhb84cb4jawxj6x2nhrgbwhrzw5qyx570dgwgb"; depends=[dplyr tidyr]; }; CLUSTShiny = derive2 { name="CLUSTShiny"; version="0.1.0"; sha256="19mh5g1ylvlab4xjxw7girxk9zkpxxczhbfijf11b592hbw0qxqk"; depends=[cluster dplyr klaR MASS psycho rmarkdown shiny]; }; CLVTools = derive2 { name="CLVTools"; version="0.10.0"; sha256="0l6jp6h2c0gcav3mnw9rz1wba7va2261pjjw5r3hqjjg8jrhfp0r"; depends=[data_table Formula ggplot2 lubridate MASS Matrix optimx Rcpp RcppArmadillo RcppGSL testthat]; }; CMAPSS = derive2 { name="CMAPSS"; version="0.1.1"; sha256="1rig2v1cl9ybnbikqfwbp4ji1jcxm6383xbdf8wz2f3lxk7iis8z"; depends=[Rdpack]; }; @@ -713,9 +732,9 @@ in with self; { CMMs = derive2 { name="CMMs"; version="1.0.0"; sha256="0wdzyg7kwad8z6kdijbpj8dmhyv17rg027rspv8hxlg8r3l8bd47"; depends=[dplyr fastDummies forcats ggplot2 robCompositions survey]; }; CMShiny = derive2 { name="CMShiny"; version="0.1.0"; sha256="0ciis3930yhn4dmazsg2yp7wi9hdfj5slr032x8qfllxis7m4k0w"; depends=[caret e1071 epitools Matrix rmarkdown shiny shinyMatrix]; }; CMapViz = derive2 { name="CMapViz"; version="0.1.0"; sha256="1s7xyp13p7fpbq0bghk07dfv90339kxs7k3343jqhrn8djf3as67"; depends=[dplyr ggplot2 readxl reshape2 scales stringr]; }; - CMplot = derive2 { name="CMplot"; version="4.4.3"; sha256="0mkjpmwpd0izczp8jgfcfxw9i4qv82aj1xyhzsxgdxnjdd7ark66"; depends=[]; }; + CMplot = derive2 { name="CMplot"; version="4.5.0"; sha256="1gg3pq55shh9khw5bsrdhk0yqgyr9xhdzqhaqksihka64wsqmhd3"; depends=[]; }; CNAIM = derive2 { name="CNAIM"; version="2.1.4"; sha256="1bwjglhsv8bd58clzlsa34ag0djyim85p0ilfclx4all1ycrz1k2"; depends=[dplyr ggplot2 jsonlite magrittr plyr r2d3 stringr tibble]; }; - CNID = derive2 { name="CNID"; version="1.3"; sha256="1apqfaym4kd38k1dadn94hb7gchqxycdl12k1v4k4pcgw7jdqrpb"; depends=[]; }; + CNID = derive2 { name="CNID"; version="1.3.1"; sha256="0lg3lw34jcgpnp311wqpq75vb0985c1x8mvb5x3hcirsy6vlq8v8"; depends=[]; }; CNLTreg = derive2 { name="CNLTreg"; version="0.1-2"; sha256="07yi0ajil1113663v3gp5d3453r4l9qm442jnpydx4ygvjk7m2ha"; depends=[adlift miscTools nlt]; }; CNLTtsa = derive2 { name="CNLTtsa"; version="0.1-2"; sha256="1vy0jjg6s8yvsvkx4pin183y5bnikm5cmjcpa9znz9dj1w6hwr5r"; depends=[adlift CNLTreg fields nlt]; }; CNPS = derive2 { name="CNPS"; version="1.0.0"; sha256="046jd4nh54qaqm85m74nvgj6x83mf8sd76y4dxydy4ydrk4cvz6p"; depends=[]; }; @@ -728,7 +747,7 @@ in with self; { COMBAT = derive2 { name="COMBAT"; version="0.0.4"; sha256="0m700pl33frdpc9y16y4zyh1ixpardh0r5kmz8a78jrh1acn30id"; depends=[corpcor mvtnorm]; }; COMBO = derive2 { name="COMBO"; version="1.0.0"; sha256="12k5lchxdxql3q7si05404f8dc26xjxqf95mq5jykgp9chgl6i5w"; depends=[dplyr Matrix rjags SAMBA tidyr turboEM]; }; COMIX = derive2 { name="COMIX"; version="1.0.0"; sha256="0dhc3zb8jkfq8b9vj8m2a9jbd9fc7xxvhz16l8xhz9v5iffgk6hh"; depends=[coda dplyr ggplot2 Rcpp RcppArmadillo RcppEigen RcppNumerical rlang stringr tidyr]; }; - COMPoissonReg = derive2 { name="COMPoissonReg"; version="0.8.0"; sha256="0yaq7mfqcdyp077xhmqd3rx0b77y2rg1yz89q4llgiwfg244y6mp"; depends=[numDeriv Rcpp]; }; + COMPoissonReg = derive2 { name="COMPoissonReg"; version="0.8.1"; sha256="0a03v9b3mv214y2ky94z8y363x6b97a68kvypvan56m0mg0zzq3d"; depends=[numDeriv Rcpp]; }; CONCUR = derive2 { name="CONCUR"; version="1.4"; sha256="0455jmc8grcpmipcz2rr6zdhxjfi0gd5zj46lyvh75k6wn2p6265"; depends=[CompQuadForm dplyr mgcv]; }; COR = derive2 { name="COR"; version="0.0.1"; sha256="0flir1mwqqs418hwcwdg72a1r89hamf6zd8jaf8g7hm4lp3i1cgf"; depends=[]; }; CORE = derive2 { name="CORE"; version="3.2"; sha256="10y404xkd4pqlh9w5hcx6laxpqy0831v61nacih094m0q6af9brl"; depends=[]; }; @@ -736,7 +755,7 @@ in with self; { COST = derive2 { name="COST"; version="0.1.0"; sha256="06xgnsccd621ihlrdmnnh14vh83q1r2bnp3iqi7vp5553b3y4l3w"; depends=[copula mvtnorm]; }; COUNT = derive2 { name="COUNT"; version="1.3.4"; sha256="02f7779fy0d2bql88x5v9csbxljhnyvl8wb8h83xrmwl7kaxsdpy"; depends=[MASS msme sandwich]; }; COVID19 = derive2 { name="COVID19"; version="3.0.3"; sha256="0idvqsqdsjm2dn7iipr0mh0xlgxfwavajxbz08wigngcaic192iy"; depends=[data_table R_utils]; }; - COVIDIBGE = derive2 { name="COVIDIBGE"; version="0.2.0"; sha256="0k2k3ssw3pjfzxpr77qbl8ghbvkfbrirxi4wzbdw3r6ccn4qvw9b"; depends=[dplyr httr magrittr projmgr RCurl readr readxl survey tibble timeDate]; }; + COVIDIBGE = derive2 { name="COVIDIBGE"; version="0.2.1"; sha256="06hqkpwbm8hnpr90w93v4dw4fiyvcp3z9nz6qm10h8n2azscd626"; depends=[dplyr httr magrittr projmgr RCurl readr readxl survey tibble timeDate]; }; CP = derive2 { name="CP"; version="1.8"; sha256="1ydpkk3zqz3r2szny68wqa4hz5iczq1q0hkkcbw7na8sg68sgriq"; depends=[survival]; }; CPAT = derive2 { name="CPAT"; version="0.1.0"; sha256="0zygncwww3cazwmx06bhzq0g41xcqfpw307azdhygc8jmcy6qj71"; depends=[purrr Rcpp RcppArmadillo Rdpack]; }; CPBayes = derive2 { name="CPBayes"; version="1.1.0"; sha256="1kw0r8spqm0s7cb3w5gplw67mhfmcbbf3ligngbary77ghkzirnb"; depends=[forestplot MASS mvtnorm purrr]; }; @@ -748,9 +767,9 @@ in with self; { CPP = derive2 { name="CPP"; version="0.1.0"; sha256="1kdf43pnavjbmxkvrj78fiwl0ykln9x9ck8pcivhj9q5rsfbhbh4"; depends=[ineq kappalab mc2d]; }; CPsurv = derive2 { name="CPsurv"; version="1.0.0"; sha256="1r68pp3jbcbwgfac132h30qx6ah780aychr49rlncn17xbdalxsh"; depends=[muhaz survival]; }; CR2 = derive2 { name="CR2"; version="0.2.1"; sha256="1j9wkpfr6bk07sj1swcjih12qz0cin811k69ihizsi4190m5f49k"; depends=[broom dplyr generics lme4 magrittr Matrix nlme performance tibble]; }; - CRABS = derive2 { name="CRABS"; version="1.1.0"; sha256="0vvywgxhik9bw3bk5yjq9rhfkwmjb67wz4yh61kp8zdijwv6mb6d"; depends=[ape colorspace deSolve dplyr ggplot2 latex2exp magrittr patchwork pracma tibble tidyr]; }; + CRABS = derive2 { name="CRABS"; version="1.2.0"; sha256="062nxmidji9qcp1v5hdh1806r99hkxqq5d9cay7xwby0h5qzl75x"; depends=[ape colorspace deSolve dplyr ggplot2 latex2exp magrittr patchwork pracma tibble tidyr]; }; CRANsearcher = derive2 { name="CRANsearcher"; version="1.0.0"; sha256="09gw1s28gb0l2cn4w3asl6zlr7wfacxwafbdrayajwckyfkjl5dl"; depends=[curl dplyr DT lubridate miniUI shiny shinyjs stringr]; }; - CRE = derive2 { name="CRE"; version="0.2.4"; sha256="1kaydv3pmz2xvhd6ihzw37mc83j6bss0gbkzypkc2sxb9rl34dp3"; depends=[bartCause data_table gbm ggplot2 glmnet inTrees logger magrittr MASS randomForest RRF stabs stringr SuperLearner xgboost xtable]; }; + CRE = derive2 { name="CRE"; version="0.2.5"; sha256="124l2pf10gnfm4bhjaqwaj5j0w3fkl56nszpr4skwvkj3f3haggc"; depends=[bartCause data_table gbm ggplot2 glmnet inTrees logger magrittr MASS randomForest RRF stabs stringr SuperLearner xgboost xtable]; }; CREAM = derive2 { name="CREAM"; version="1.1.1"; sha256="1lccpwn6c5pmykgf689gvvpqdcilkys4vclpxjhllhanjrfhcs3q"; depends=[]; }; CREDS = derive2 { name="CREDS"; version="0.1.0"; sha256="1llgxsmpk13gq75y2r3qiwwjcl87bknkryaw5dq0ndf17rj31mw8"; depends=[MASS]; }; CRF = derive2 { name="CRF"; version="0.4-3"; sha256="0jlcc1ffd2z7sz1szbi4vrp5rihmcp18bsw27x02ivi6l21nyivf"; depends=[Matrix]; }; @@ -759,21 +778,21 @@ in with self; { CRTConjoint = derive2 { name="CRTConjoint"; version="0.1.0"; sha256="1lp3rxjd8pilin6kvl49vm11bjd6dzhalmwf99j3jsiiavxc6baq"; depends=[doSNOW foreach Rcpp snow]; }; CRTSize = derive2 { name="CRTSize"; version="1.2"; sha256="00shm1d32gwssf230rxjnn41rvxpli6jnx0axp69bjvfm8zqynqj"; depends=[]; }; CRTgeeDR = derive2 { name="CRTgeeDR"; version="2.0.1"; sha256="0sqsgs8qbc6gvzr3l2r8y83nbhz12q3jf2cjlb2xgif15r7sbnxx"; depends=[ggplot2 MASS Matrix]; }; - CRTspat = derive2 { name="CRTspat"; version="1.0.0"; sha256="02am3jr538dbgky00d2sli7w4yl8ij59ijcs0akb9gqn0nffq251"; depends=[dplyr geepack ggplot2 jagsUI lme4 magrittr MASS Matrix OOR sf spatstat_geom spatstat_random tidyr TSP]; }; + CRTspat = derive2 { name="CRTspat"; version="1.1.0"; sha256="0a2pwnfja66gvb10mb84z69xxwcpsm6i0yghs3gn6biywwp4jg5n"; depends=[dplyr geepack ggplot2 jagsUI lme4 magrittr MASS Matrix OOR sf spatstat_geom spatstat_random tidyr TSP]; }; CRWRM = derive2 { name="CRWRM"; version="0.0.1"; sha256="0w6lg5q2c0w5p9vg5qr32pycyl8d1zp0s55jlvf2xhmqx34677hd"; depends=[]; }; CRediTas = derive2 { name="CRediTas"; version="0.2.0"; sha256="163m37bz99g6qvfbnbvvdv02x6984x5prsbj1d7mq08bnlmj9zr0"; depends=[]; }; - CSCDRNA = derive2 { name="CSCDRNA"; version="1.0.3"; sha256="0ym6bzk8n9kf0pvd3h4dv2hhxmmrr54hvs7vccmxrhxikr8ix5iy"; depends=[Biobase BisqueRNA limSolve MAST nlshrink plyr Seurat]; }; CSCNet = derive2 { name="CSCNet"; version="0.1.2"; sha256="0amsrjzpfga66mh6x589whz70xpl0sg10f80x87apxz312rb4r8m"; depends=[caret dplyr furrr future glmnet magrittr prodlim purrr recipes riskRegression stringr survival tibble tidyverse]; }; CSESA = derive2 { name="CSESA"; version="1.2.0"; sha256="0pv6iabq1w22qbhlsbckdvva4n7igpzrjnrahmq83a6wxgvjbf5j"; depends=[Biostrings]; }; CSGo = derive2 { name="CSGo"; version="0.6.7"; sha256="19awbblkx0g58gvd43xs1dmcsn588k185njw3fri8xxbn26xp5jy"; depends=[dplyr extrafont furrr future fuzzyjoin ggplot2 httr jsonlite magrittr purrr stringr]; }; CSHShydRology = derive2 { name="CSHShydRology"; version="1.4.0"; sha256="06hdqdzvfpfn4r6x1d2m24lz2w5sj20fr7d791zqzd16mp767qcc"; depends=[circular dplyr fields ggplot2 ggspatial httr Kendall lubridate magrittr OpenStreetMap plotrix raster rnaturalearth sf stringr tidyhydat timeDate whitebox]; }; - CSIndicators = derive2 { name="CSIndicators"; version="1.0.1"; sha256="01x5lyxw5ca8xqndfxdjzj2jak7kwndqwqb9shz53hj6p5z0wld2"; depends=[multiApply]; }; + CSIndicators = derive2 { name="CSIndicators"; version="1.1.0"; sha256="0kqq8fdidp9mynbqk4xg2s199n2b2ylsh5bv5a666c9fvfaq305k"; depends=[ClimProjDiags CSTools lmom lmomco multiApply SPEI zoo]; }; CSMES = derive2 { name="CSMES"; version="1.0.1"; sha256="1p8wsl9h1f44a7kkj660h1k1v26pp6q1h13rw9l6pikniwdks84c"; depends=[caTools data_table mco ROCR rpart zoo]; }; CSTE = derive2 { name="CSTE"; version="2.0.0"; sha256="0r38pvd83aw9zrq43malw50vlbnknh3b53x3ydj0wxrk95wsmy46"; depends=[dfoptim fda locpol Rcpp survival]; }; CSTools = derive2 { name="CSTools"; version="5.1.1"; sha256="0mh50wz0c7x00mi5a5h474v5l5pimgpijdywkh1rsix7a0gj8fzj"; depends=[abind ClimProjDiags data_table easyVerification ggplot2 lubridate maps multiApply ncdf4 plyr qmap rainfarmr RColorBrewer reshape2 s2dv scales startR verification]; }; CSclone = derive2 { name="CSclone"; version="1.0"; sha256="0lqsqsgh2sf44fr1r7g179556v294yr1wy7x4320g7adxshrwyh5"; depends=[DNAcopy lpSolve mcclust moments]; }; CSeqpat = derive2 { name="CSeqpat"; version="0.1.2"; sha256="1nqk873cagpn4fba4rmyzb6hni1p5lqcvsr9givrcm0gfx756w1h"; depends=[NLP tm]; }; CTAShiny = derive2 { name="CTAShiny"; version="0.1.0"; sha256="18qw8nx1r4gwlxj9zxn4hllpn29fv3i4fgwyl5fh3qsv9hmbvi0x"; depends=[epitools rpivotTable shiny shinyMatrix]; }; + CTD = derive2 { name="CTD"; version="1.2"; sha256="1zigym3cy5p3wgw2b2rji72qgy4fmpcscc9281x5m5qndsl5gyy5"; depends=[igraph]; }; CTM = derive2 { name="CTM"; version="0.2"; sha256="0h1lpygjq46nwkn4km49bngvxmgrnh3csrfln3yjr9yyzs7d3lz1"; depends=[jiebaR plyr]; }; CTNote = derive2 { name="CTNote"; version="0.1.0"; sha256="078h48y42skjdknamyznnl2g7jl3vicdggmx7w7rd3wc1lnm7l8f"; depends=[stringi stringr]; }; CTShiny = derive2 { name="CTShiny"; version="0.1.0"; sha256="0lmzf02w8j4rgz1kh7jwvl0sb6y38r56gwmsf7pkc00w1dskb722"; depends=[caret dplyr e1071 party rhandsontable rmarkdown rpart rpart_plot shiny]; }; @@ -795,23 +814,23 @@ in with self; { CVrisk = derive2 { name="CVrisk"; version="1.1.1"; sha256="1krqg3w2yqbpisivyym98p6yvhw1dw6qga8xm1sqxdd75g982fhq"; depends=[]; }; CaDENCE = derive2 { name="CaDENCE"; version="1.2.5"; sha256="1z3p5y1l67r470x6wrhnyjvw1ndppcm08fpj99x122j7kn6byff2"; depends=[pso]; }; CaPO4Sim = derive2 { name="CaPO4Sim"; version="0.2.0"; sha256="0s4mqlas41ll656hj1imzqydgwgw002d469z01fjdcs4d6daljw6"; depends=[DT htmltools magrittr plotly purrr rintrojs shiny shinycssloaders shinydashboard shinydashboardPlus shinyjqui shinyjs shinyWidgets visNetwork]; }; - Cairo = derive2 { name="Cairo"; version="1.6-1"; sha256="051pqbhfsr3dki2wiycbwvka850y4h4gyhvnjjf907q8sz2cykg6"; depends=[]; }; + Cairo = derive2 { name="Cairo"; version="1.6-2"; sha256="0qjdsj6mpbwvnp8cimc4yrqfq3z68pfcd78ahsai52hpjdplqvvb"; depends=[]; }; CalSim = derive2 { name="CalSim"; version="0.5.2"; sha256="1ij3xaizq1lpq5vg25i8pz4khm7ab81kzfayp6a914n0jgxvprj7"; depends=[ExactMultinom spatstat spatstat_geom]; }; Calculator_LR_FNs = derive2 { name="Calculator.LR.FNs"; version="1.3"; sha256="03qg9rnz623dwnp68xhhsh9788s49n6xp0migg1nnjaqhrahlgdd"; depends=[]; }; CalibratR = derive2 { name="CalibratR"; version="0.1.2"; sha256="1hnmhijckxd35h8mhpzqpglk1ykdih2c5kg17myc7cci5xjk9nfr"; depends=[doParallel fitdistrplus foreach ggplot2 pROC reshape2]; }; CalibrateSSB = derive2 { name="CalibrateSSB"; version="1.3.0"; sha256="0qwqvyrpprxc5v0ng6qjp9gmdf0n0iiv46z14d8h303xpi84g42x"; depends=[survey]; }; CalibrationCurves = derive2 { name="CalibrationCurves"; version="2.0.0"; sha256="0h6mnsl5zak7x2gcjja0rbdq87bjr6qqjbaal509f7gzy6jg3ql0"; depends=[bookdown ggplot2 Hmisc rms survival]; }; CamelUp = derive2 { name="CamelUp"; version="2.0.3"; sha256="1d3ywb4bxnn149api6lqry8q9lasng79hzka9ndr5cv38pkbvva9"; depends=[data_table dplyr ggplot2 magrittr Rcpp shiny]; }; - CancerEvolutionVisualization = derive2 { name="CancerEvolutionVisualization"; version="1.0.1"; sha256="1ldhrqnx5xmshhbjrfbzwbp9p9lgawfnjsmw6vj8jxww9yg2pl7l"; depends=[gridExtra gtable plyr stringr]; }; + CancerEvolutionVisualization = derive2 { name="CancerEvolutionVisualization"; version="2.0.1"; sha256="1iizcr43wrmz099341knzn5jd1h1s0nh0hw64g1r18k6d39swcwd"; depends=[BoutrosLab_plotting_general gridExtra gtable plyr stringr]; }; CancerGram = derive2 { name="CancerGram"; version="1.0.0"; sha256="1p612dbn6dxn3nz8m0pzlsbczg3f8gwqk9q0fnxbcdlbll0vf2k0"; depends=[biogram devtools dplyr pbapply ranger shiny stringi]; }; - Canek = derive2 { name="Canek"; version="0.2.3"; sha256="1x6lyzmcgfwl9469j3f6csv7d1zaq5yn0nvxs5xvrplp02j8614b"; depends=[bluster FNN fpc igraph irlba matrixStats numbers]; }; + Canek = derive2 { name="Canek"; version="0.2.5"; sha256="1irzdhqgzn6kz79f80ri1iv8zlg8ik95bqcllj14ycma1c1mwzsy"; depends=[bluster FNN fpc igraph irlba matrixStats numbers]; }; Canopy = derive2 { name="Canopy"; version="1.3.0"; sha256="0979hpphzhf4v71jx0shh3l8nffmpsn9l6f8ip2wxzcyx571i1wd"; depends=[ape fields pheatmap scatterplot3d]; }; CarletonStats = derive2 { name="CarletonStats"; version="2.2"; sha256="1d9g773l1ra5cr2q3azlkpkqy2035zq065cpfyavf57js0ks5ciq"; depends=[ggplot2 patchwork scales]; }; - Carlson = derive2 { name="Carlson"; version="2.1.0"; sha256="1b1jrkyjj2ygvdphzayrmnirdzmyddrjp6sgiqf6404kly50ff0w"; depends=[Rcpp]; }; + Carlson = derive2 { name="Carlson"; version="3.0.0"; sha256="19z4b74kjqpgbb87ddd5sx0ydjnaa54mqrc1yz4wdl8md7d1anbq"; depends=[Rcpp]; }; Cascade = derive2 { name="Cascade"; version="2.1"; sha256="1hfbv9129rnrjqspjd8wnhw0qrp1m142bixlwddzr6j2sg7r8s20"; depends=[abind animation cluster igraph lars lattice limma magic nnls survival tnet VGAM]; }; CascadeData = derive2 { name="CascadeData"; version="1.4"; sha256="0cbnp8mqv3alsz7b5fa8djg1yd46zkn1f3b0pqww2yn8zavd4fih"; depends=[]; }; CaseBasedReasoning = derive2 { name="CaseBasedReasoning"; version="0.3"; sha256="0ayckjq53lmdm429bvb4fjsbyy7cp3jgds30swmzq9qf75bnaa55"; depends=[cowplot dplyr ggplot2 pryr purrr R6 ranger Rcpp RcppArmadillo RcppParallel rms survival tidyr]; }; - CaseCohortCoxSurvival = derive2 { name="CaseCohortCoxSurvival"; version="0.0.32"; sha256="1r8c0d776vhxckcsf7jyiigxm1i8rlklxwnfkqvg73jqz1qhw2nw"; depends=[nnet survival]; }; + CaseCohortCoxSurvival = derive2 { name="CaseCohortCoxSurvival"; version="0.0.34"; sha256="0qb9sqqycdqk89qxm4cch0x62d004ybsxrrv6q0yzg6bc581jx0j"; depends=[nnet survival]; }; CatDataAnalysis = derive2 { name="CatDataAnalysis"; version="0.1-5"; sha256="19bbilvz9h2bswpm5992c48cm4slc73kf0ny2mp78vhcfadri9cb"; depends=[]; }; CatDyn = derive2 { name="CatDyn"; version="1.1-1"; sha256="0gkaxs7apqhq7mp3chjsyhrnk3qkk11f8p7smmyj6h73888ry8jn"; depends=[BB optimx]; }; CatEncoders = derive2 { name="CatEncoders"; version="0.1.1"; sha256="1q9wzq06lac8z9y8b65alsxpb48bw8wqmifd893kknk51xq6r9kl"; depends=[data_table Matrix]; }; @@ -819,7 +838,7 @@ in with self; { CatReg = derive2 { name="CatReg"; version="2.0.3"; sha256="02pxarc4v45w8ncx8hq084m69qgl9s2lkrv1biz60vrvl99dg016"; depends=[Rcpp Rdpack]; }; CatastRo = derive2 { name="CatastRo"; version="0.2.3"; sha256="0rfyc30k2l9r2vm8dq3ahffcb0zz0bp9d6ik0agz0k66hz4v73k6"; depends=[dplyr httr mapSpain rappdirs sf stringi terra tibble xml2]; }; CauchyCP = derive2 { name="CauchyCP"; version="0.1.1"; sha256="0sv1gfvgwqvm7zb3rhlhmfgfwm2i49wzzkg473gdmamvvpvzih43"; depends=[survival]; }; - CausCor = derive2 { name="CausCor"; version="0.1.2"; sha256="1m41i4knqh4hddz3s3p62qhx2dmdypm8gfdwlczlja89llx9737b"; depends=[cowplot dplyr ggplot2 magrittr WriteXLS]; }; + CausCor = derive2 { name="CausCor"; version="0.1.3"; sha256="0hqzzy6wmxws90q4p7d2k0781zmkqq344l352zj9lcqh23ci4p8i"; depends=[cowplot dplyr ggplot2 magrittr WriteXLS]; }; CausalGAM = derive2 { name="CausalGAM"; version="0.1-4"; sha256="1riz11hfg96iks7734rg692l75nfrd3hmr9gw563j27rkk1nfkl6"; depends=[gam]; }; CausalGPS = derive2 { name="CausalGPS"; version="0.4.1"; sha256="0qawlwd5a6xryw0688wx04s55gahchxb3xxs0jpiqqrm9rp3y687"; depends=[cowplot data_table Ecume gam ggplot2 gnm KernSmooth locpol logger MASS polycor Rcpp rlang SuperLearner wCorr xgboost]; }; CausalImpact = derive2 { name="CausalImpact"; version="1.3.0"; sha256="0h3sh35962vdph72svfdvk6b1gl7wnj2kfkkpcjldbiszlfxp7wx"; depends=[assertthat Boom bsts ggplot2 zoo]; }; @@ -833,9 +852,9 @@ in with self; { CensMFM = derive2 { name="CensMFM"; version="3.0"; sha256="060cr5iz2ch27j09mkd758y3chanrx5r9b9fnwpdhxh5kiv07mkz"; depends=[ggplot2 gridExtra MomTrunc mvtnorm tlrmvnmvt]; }; CensSpatial = derive2 { name="CensSpatial"; version="3.6"; sha256="10jgr9zvdvm8fgh0llfsxjkd5f565i1qh00zrqxz55is7p4r3h35"; depends=[geoR lattice moments msm mvtnorm numDeriv optimx psych raster Rcpp tlrmvnmvt tmvtnorm]; }; Census2016 = derive2 { name="Census2016"; version="0.2.0"; sha256="1c88jmd565v19w8dbvai10f9y5lyfmzsxsjblc3gdykf9kharvcq"; depends=[data_table]; }; - CerioliOutlierDetection = derive2 { name="CerioliOutlierDetection"; version="1.1.9"; sha256="0s3pd4y165v69m4wmg9jlc7dl4gz64la9yic67l3n4242wa84p19"; depends=[robustbase]; }; + CerioliOutlierDetection = derive2 { name="CerioliOutlierDetection"; version="1.1.13"; sha256="1m1mj5cf0sfdfci05ayc86wfx3cj12dfn98pi7cqxcf5nbn3h3n5"; depends=[robustbase]; }; Certara_NLME8 = derive2 { name="Certara.NLME8"; version="1.2.4"; sha256="10zmzfx2aqxj5gpingl6hkq6vb7q0shhkzar2jr30br7nzfll1sd"; depends=[batchtools data_table reshape xml2]; }; - Certara_R = derive2 { name="Certara.R"; version="1.0.0"; sha256="0na4411rxxqjyrxjmj27i9b5lrig2jysazk9fnpvrws8c63zl39y"; depends=[batchtools data_table dplyr DT ggplot2 htmltools jsonlite magrittr plotly remotes reshape rlang shiny shinyjqui shinyjs shinymaterial shinyWidgets sortable ssh xml2]; }; + Certara_R = derive2 { name="Certara.R"; version="1.1.0"; sha256="07k7dj37zywkfbrx85gnl6cvc0a0n1xyvmac0lg74nzqb6qb3i1z"; depends=[batchtools data_table dplyr DT ggplot2 htmltools jsonlite magrittr plotly remotes reshape rlang shiny shinyjqui shinyjs shinymaterial shinyWidgets sortable ssh xml2]; }; ChIPtest = derive2 { name="ChIPtest"; version="1.0"; sha256="1yn5b5s56k2dbhw6damxj18xbaiz180ym7fiq2i3p2gkcgwpddbz"; depends=[]; }; ChainLadder = derive2 { name="ChainLadder"; version="0.2.18"; sha256="0q0ycwswi1hxcv1apq40kzb91sgzbwb84nynd84750r449hbwrif"; depends=[actuar cplm ggplot2 lattice MASS Matrix statmod systemfit tweedie]; }; ChangePointTaylor = derive2 { name="ChangePointTaylor"; version="0.2"; sha256="0rf3h7l8l6fw2i489ldcqhsf9ppjzpx298p5ciyp9iyc0zcykz38"; depends=[bench dplyr ggplot2 magrittr purrr Rcpp rlang tidyr]; }; @@ -870,13 +889,13 @@ in with self; { ClassComparison = derive2 { name="ClassComparison"; version="3.1.8"; sha256="0fd5s4697pvj295fzvvn5mislf42wfzrcvks17v98388rph586gl"; depends=[Biobase oompaBase]; }; ClassDiscovery = derive2 { name="ClassDiscovery"; version="3.4.0"; sha256="06l7jvpcdynij05hb0ka33zpg7xdyqyzfzx24s0bnlspp83yc62s"; depends=[Biobase cluster mclust oompaBase oompaData]; }; CleanBSequences = derive2 { name="CleanBSequences"; version="1.4.0"; sha256="194590508s0j5z6srm2vmv6aa4d2fia4apbd3zmd8ria27ppcrfg"; depends=[Biostrings]; }; - ClickClust = derive2 { name="ClickClust"; version="1.1.5"; sha256="0b46f453mffg4ym6yvmh7g3v05mc9gphwfra75j28y1425s87yvw"; depends=[]; }; + ClickClust = derive2 { name="ClickClust"; version="1.1.6"; sha256="09pb8fpddyzqznwxz1njpvwyqd45ywbaxj9sx5dzg134c7cz1z5j"; depends=[]; }; ClickClustCont = derive2 { name="ClickClustCont"; version="0.1.7"; sha256="1caymvpwvxq4rirnjm2kwzvqm1pl01rdc3785k8mq4k2m0n6l2rz"; depends=[gtools]; }; ClickHouseHTTP = derive2 { name="ClickHouseHTTP"; version="0.3.2"; sha256="1vk8am5yvg4i5rgkgw1y0ngidd052wmc3700sx8ggnnk28vrnpsr"; depends=[arrow data_table DBI httr jsonlite]; }; CliftLRD = derive2 { name="CliftLRD"; version="0.1-1"; sha256="0qsdv568klxg6chgw329jbfjmf6w61hly2vxp90yzdfkca03z2s4"; depends=[CNLTreg liftLRD]; }; ClimClass = derive2 { name="ClimClass"; version="2.1.0"; sha256="1r836md31z2r5d9xckkbalzbhm4kf5paljv71kxpy53q92k7yi91"; depends=[geosphere ggplot2 reshape2]; }; ClimInd = derive2 { name="ClimInd"; version="0.1-3"; sha256="0n5kd001nkpks16c3msvn2qvzyrjawa2rqwh8zph2qr5hgpwcpg7"; depends=[chron SPEI weathermetrics]; }; - ClimMobTools = derive2 { name="ClimMobTools"; version="0.6"; sha256="0v9cm3xn42rd6bkad94ivzm92zjvpfmchingccvn670kiahb41kz"; depends=[httr jsonlite Matrix RSpectra]; }; + ClimMobTools = derive2 { name="ClimMobTools"; version="1.1"; sha256="05s887c7rywrqhrm7h8ikm70nsagbxjq06ymyjbmcws2bxysas8q"; depends=[httr jsonlite lpSolve Matrix RSpectra]; }; ClimProjDiags = derive2 { name="ClimProjDiags"; version="0.3.2"; sha256="1dn1hyc8p2c1nikd1z9frfy96khhzx8i55av02zgghjnv9g7hkr8"; depends=[multiApply PCICt plyr]; }; ClinSigMeasures = derive2 { name="ClinSigMeasures"; version="1.0"; sha256="0fw89a1q92ck32z6w4zn1ldvky6ag1gi7b9bbv10mhmqhq4w3k58"; depends=[]; }; ClinicalTrialSummary = derive2 { name="ClinicalTrialSummary"; version="1.1.1"; sha256="0b5by4sn9yvrvxr9921yqsgp8ma3g1hi2qbp5j9m836db1zjhyla"; depends=[Rcpp]; }; @@ -884,6 +903,7 @@ in with self; { CliquePercolation = derive2 { name="CliquePercolation"; version="0.4.0"; sha256="17m8pj8wg2ngzip1ag3jm5fqi083ilrsi0rvpcg5jmqflwlka8h3"; depends=[colorspace igraph lessR magrittr Matrix ohenery pbapply Polychrome qgraph]; }; CloneSeeker = derive2 { name="CloneSeeker"; version="1.0.11"; sha256="19aj4c2q3wp4vp08j72700wwyqmkqxwml2fwmz0wsxdam8vp1ydi"; depends=[combinat mc2d quantmod]; }; CluMP = derive2 { name="CluMP"; version="0.8.1"; sha256="1vpxl2rcknqx32b94b48iirkh7r7cdri9mcljrw29gsbvhrfc46k"; depends=[amap data_table dplyr ggplot2 MASS NbClust rlang tableone]; }; + ClueR = derive2 { name="ClueR"; version="1.4.2"; sha256="0zj75q4aqkf6l7720cc38rjx51lmqfp6gmgxp7pkk2ixdlpmh3sy"; depends=[e1071]; }; ClusBoot = derive2 { name="ClusBoot"; version="1.2.1"; sha256="03xch4s8xlvl17vbpm3jk0a6faa57hq0amyg91d9kjr4d6bb4km1"; depends=[]; }; ClusPred = derive2 { name="ClusPred"; version="1.1.0"; sha256="12pm5vkfxpaincv9ajid0p07l0mjc2kfqqfg0ls2pcxmmkh8wwb4"; depends=[ald ALDqr quantreg Rcpp RcppArmadillo VGAM]; }; ClusROC = derive2 { name="ClusROC"; version="1.0.2"; sha256="055ppcnzwkapnyf9xvld4bvkccwf494gqcb2qq0vnsa8n6bz5k46"; depends=[doParallel ellipse foreach ggplot2 ggpubr iterators nlme numDeriv Rcpp RcppArmadillo rgl]; }; @@ -898,7 +918,7 @@ in with self; { ClustVarLV = derive2 { name="ClustVarLV"; version="2.1.1"; sha256="0maylgf6czlll5zn3xj68acmllxi4x2r4ri6bdx8vl9apzax1rgy"; depends=[doParallel foreach iterators plyr Rcpp RcppEigen]; }; Cluster_OBeu = derive2 { name="Cluster.OBeu"; version="1.2.3"; sha256="10i7mnaq968my1c5hi8bdsj05m64wlmrf4n4m118is5h1q7zss8r"; depends=[car cluster clValid data_tree dendextend jsonlite mclust RCurl reshape reshape2 stringr]; }; ClusterBootstrap = derive2 { name="ClusterBootstrap"; version="1.1.2"; sha256="1ha50yzc2arlz4c2g7r9w891fk775xfbhz0gky3zxawlsa02213s"; depends=[dplyr magrittr]; }; - ClusterR = derive2 { name="ClusterR"; version="1.3.1"; sha256="1xn0zkgjagfnqagk2yllaa6j8rlxq2f4pn3yqj4gff90bc0cv3kf"; depends=[ggplot2 gmp lifecycle Rcpp RcppArmadillo]; }; + ClusterR = derive2 { name="ClusterR"; version="1.3.2"; sha256="1bs1sl3yy90zx4ni0lhvdivzfas6i4v9203m59njvk5df9x82ffp"; depends=[ggplot2 gmp lifecycle Rcpp RcppArmadillo]; }; ClusterRankTest = derive2 { name="ClusterRankTest"; version="1.0"; sha256="01gzalhibqcdx3a6yc2cm1v77rscva73v5m5m0qkrgqdp9c8ph2a"; depends=[]; }; ClusterStability = derive2 { name="ClusterStability"; version="1.0.4"; sha256="1y88dv7n2cxm5w9pbg36dvx55nzvsnq4vbmx401147xr5p03yk9w"; depends=[cluster copula Rcpp WeightedCluster]; }; ClusteredMutations = derive2 { name="ClusteredMutations"; version="1.0.1"; sha256="1n31nnvpjh1faw751k8m3ga3wfl0yhdpnszwckqhfzlma1jr8z04"; depends=[seriation]; }; @@ -912,15 +932,16 @@ in with self; { CoOL = derive2 { name="CoOL"; version="1.1.2"; sha256="18z7s8bvnym4xj0hh5m6bwm86ddmsgivqv4g5zbd9m87l7khl9pn"; depends=[ClustGeo data_table ggplot2 mltools plyr pROC Rcpp RcppArmadillo wesanderson]; }; CoRpower = derive2 { name="CoRpower"; version="1.0.4"; sha256="08chsbbl74rskinp68pwzpvnxx5lkfqf71j7ryp1cwy7199h3jyw"; depends=[osDesign survival]; }; CoSMoS = derive2 { name="CoSMoS"; version="2.1.0"; sha256="149mybfxaqssawp8fqhjiv3xljzflc02y4pfvavz7rklfplidqkb"; depends=[animation cowplot data_table directlabels ggplot2 ggquiver mAr Matrix matrixcalc MBA mvtnorm nloptr plot3D pracma]; }; - CoTiMA = derive2 { name="CoTiMA"; version="0.6.2"; sha256="0394a6m1hg9klcgpk4s51rql8k2084cbs6bzpgrsbk3gnvcxy8s3"; depends=[abind crayon ctsem doParallel foreach lavaan MASS MBESS OpenMx openxlsx psych rootSolve RPushbullet scholar stringi zcurve]; }; - CoastlineFD = derive2 { name="CoastlineFD"; version="1.0.0"; sha256="006bl6gpjlmfayfl9116mx3qmvxgv1p811gbnk0rglpy0185lxlq"; depends=[fields ggplot2 progress readxl sf sfheaders tidyr writexl]; }; + CoTiMA = derive2 { name="CoTiMA"; version="0.7.0"; sha256="1mpinx6wql4fqyfpc94nxw7qav0llg6pyd0kl0wilkfv9vc12yml"; depends=[abind crayon ctsem doParallel foreach lavaan MASS MBESS OpenMx openxlsx psych rootSolve RPushbullet scholar stringi zcurve]; }; + CoastlineFD = derive2 { name="CoastlineFD"; version="1.1.0"; sha256="13503mzmfq2wwha49s4z91xiy9drbwlbbl0rg74zdlrgbqgfv7k4"; depends=[fields ggplot2 progress readxl sf sfheaders tidyr writexl]; }; CodataGS = derive2 { name="CodataGS"; version="1.43"; sha256="1bjn6s1f5jn64gwrvjz5kvwfkbqrqhavib6dj9k37rb5nzqkwhp6"; depends=[Matrix]; }; CodeDepends = derive2 { name="CodeDepends"; version="0.6.5"; sha256="0l7kiv3awx50glf5cs841b4zzsff1ml90f0zr868ygvwsr4ps1hq"; depends=[codetools graph XML]; }; - CodelistGenerator = derive2 { name="CodelistGenerator"; version="2.0.0"; sha256="1pb56361jj9mwyx5b22ibygpql7ycyvhijv96727l6fg2mjg0s8g"; depends=[CDMConnector checkmate cli DBI dplyr glue lubridate magrittr PatientProfiles purrr RJSONIO rlang stringr tidyr tidyselect]; }; + CodelistGenerator = derive2 { name="CodelistGenerator"; version="2.1.1"; sha256="0wrdg0nywpcl3gncyl5yrziqc3skwwv9li9m7hb0qj7bcdnsz0g2"; depends=[CDMConnector checkmate cli DBI dplyr glue lubridate magrittr PatientProfiles purrr RJSONIO rlang stringr tidyr tidyselect]; }; CohensdpLibrary = derive2 { name="CohensdpLibrary"; version="0.5.10"; sha256="1d3nk3wr23skmzskglw7n8vpj9ja6ak4q9db9xlmf1j3plsx5g98"; depends=[Rdpack]; }; - CohortAlgebra = derive2 { name="CohortAlgebra"; version="0.0.4"; sha256="0zmz6f1ysp4gy6lg15x1x93q7v5zli0znfsk522bki4qbh2h1qq8"; depends=[checkmate DatabaseConnector dplyr lifecycle rlang SqlRender]; }; + CohortAlgebra = derive2 { name="CohortAlgebra"; version="0.1.0"; sha256="0bpmszbkjmsxbcwryrr229ji59r2m3srajvpkimlay3b7hv7lmrq"; depends=[checkmate DatabaseConnector dplyr lifecycle rlang SqlRender]; }; CohortExplorer = derive2 { name="CohortExplorer"; version="0.1.0"; sha256="1jskxg72g7n5n3zg2kmkhykcrbf30q0h919273n6lm6nw0pzn44d"; depends=[checkmate DatabaseConnector dplyr lifecycle ParallelLogger rlang]; }; CohortPlat = derive2 { name="CohortPlat"; version="1.0.5"; sha256="01jvi7k3lvx684c4cwn3xrpwjsksk7gjvs3db64ji7chc4lkajv4"; depends=[doParallel dplyr epitools forcats foreach ggplot2 openxlsx plotly purrr tidyr zoo]; }; + CohortSurvival = derive2 { name="CohortSurvival"; version="0.2.5"; sha256="0d6k75icfr4k3hb7pliqsvn62ncd446pd7nxfnx4vhgalq6sxdxr"; depends=[broom CDMConnector checkmate cli DBI dbplyr dplyr lubridate magrittr PatientProfiles rlang scales stringr survival tibble tidyr]; }; Coinprofile = derive2 { name="Coinprofile"; version="0.1.9"; sha256="1bcip62gm34cx5m8a1mx9px2rhgvdmsgnn6q9q40k8p5hw4cx9g0"; depends=[coin exactRankTests ggplot2 plyr Rdpack zoo]; }; CollapseLevels = derive2 { name="CollapseLevels"; version="0.3.0"; sha256="1d2grxh95893j260igh4yh2z3rm3zymlpadqyp6w3na91birazb4"; depends=[dplyr ggplot2 lazyeval magrittr]; }; CollocInfer = derive2 { name="CollocInfer"; version="1.0.4"; sha256="1iwf5g2y7i0j8dc19hdhya4m6g47jj968glnclj7a2yaq2yx37cj"; depends=[deSolve fda MASS Matrix spam]; }; @@ -944,10 +965,10 @@ in with self; { CompareMultipleModels = derive2 { name="CompareMultipleModels"; version="0.1.0"; sha256="0qzybbxx5kqlrb260c0wh2vhp3ci5wk6853mm01wfyivhvf7sz0h"; depends=[CEEMDANML]; }; CompareTests = derive2 { name="CompareTests"; version="1.2"; sha256="1z96kh851bpr2szgyjszkpv6m5ma6abz7hrm50fgvfpgxkj7f4yi"; depends=[]; }; ComparisonSurv = derive2 { name="ComparisonSurv"; version="1.1.1"; sha256="0lidakxb1ab6bpb7sf2arjl1xpym1lzxbh63g0x4c2dm7h0kzkwi"; depends=[muhaz survival survRM2 TSHRC]; }; - Compind = derive2 { name="Compind"; version="2.8"; sha256="0h5kklflxdaf3i3iksblhfhyfsa44hrj9aniz83pyf62730lzjxx"; depends=[Benchmarking boot GPArotation Hmisc lpSolve MASS nonparaeff np psych smaa spdep]; }; + Compind = derive2 { name="Compind"; version="3.0"; sha256="0g5m1dpnadgqszk079rxf6rm0d17qnvfzi7fwbs99sl2nimy3ni9"; depends=[Benchmarking boot FactoMineR GPArotation GWmodel Hmisc lpSolve MASS nonparaeff np psych smaa sp spdep]; }; ComplexUpset = derive2 { name="ComplexUpset"; version="1.3.3"; sha256="1sk4v5kc2wkgfaws0hjlp30mngm907r5gz1iglf68j46lfs9jbsv"; depends=[colorspace ggplot2 patchwork scales]; }; CompositeReliability = derive2 { name="CompositeReliability"; version="1.0.3"; sha256="04qpwqrz1x1hdjfin77fb4kywv9sspzdq7kn4f7jxaaz3ykhrhkc"; depends=[dplyr ggplot2 lme4 magrittr plyr psych reshape2 Rsolnp tidyr]; }; - Compositional = derive2 { name="Compositional"; version="6.5"; sha256="0m92v0b9lnyyjj0wac6m0qbn5sxzrswwm48vs7cfv60lakwgkgxy"; depends=[codalm Directional doParallel emplik energy FlexDir foreach glmnet MASS mda mixture nnet pchc RANN Rfast Rfast2 sn]; }; + Compositional = derive2 { name="Compositional"; version="6.6"; sha256="17mhk1k6v7y3icyd5b0xlmmi98fs8hz4049n2wiabsn8si59z99k"; depends=[codalm Directional doParallel emplik energy FlexDir foreach glmnet MASS mda mixture mvhtests nnet pchc quadprog regda Rfast Rfast2 Rnanoflann sn]; }; CompoundEvents = derive2 { name="CompoundEvents"; version="0.2.0"; sha256="0dlkkr26f07g0q3kcg0byvvlnf2hd5i8h9p1mkba333wh6af21ic"; depends=[]; }; ConConPiWiFun = derive2 { name="ConConPiWiFun"; version="0.4.6.1"; sha256="1ziy646lbx297kia797xjxa8hyl826x1hiighyjslvnlvrhapx08"; depends=[Rcpp]; }; ConNEcT = derive2 { name="ConNEcT"; version="0.7.27"; sha256="1j66qmvgm9yrgnrcg600s25haq9imcshmy6fv9vd84mhy21md85h"; depends=[qgraph]; }; @@ -980,17 +1001,17 @@ in with self; { CooRTweet = derive2 { name="CooRTweet"; version="1.5.0"; sha256="0ws2fjvqnfx86776pbx23j8mbi02dvgm6fc4j7036h9qj6hqfbld"; depends=[data_table igraph lubridate Matrix RcppSimdJson stringi textreuse tidytable]; }; CooccurrenceAffinity = derive2 { name="CooccurrenceAffinity"; version="1.0"; sha256="0wn8jkvm5x30vj1vy196l691kbs5aa3j09s5dsa2r54cr34d16mn"; depends=[BiasedUrn cowplot ggplot2 plyr reshape]; }; CoopGame = derive2 { name="CoopGame"; version="0.2.2"; sha256="0i4yw2nznmcps9s9f592nbs8dvncb0w2bynvsfkp21lzd4pfsp4n"; depends=[geometry gtools rcdd]; }; - CoordinateCleaner = derive2 { name="CoordinateCleaner"; version="3.0"; sha256="1jxcg1afmczrs88aj5lv5igypr8nlz9flf3b65lxqzk5p0wfgxfq"; depends=[dplyr geosphere ggplot2 rgbif rnaturalearth terra tidyselect]; }; + CoordinateCleaner = derive2 { name="CoordinateCleaner"; version="3.0.1"; sha256="0bs1vr145ab42i7x0jcsin6sfaxy05ly2i4qcrlvyvz303ynj0rf"; depends=[dplyr geosphere ggplot2 rgbif rnaturalearth terra tidyselect]; }; CopCTS = derive2 { name="CopCTS"; version="1.0.0"; sha256="1j0bhkjk181y9k69442diswgwax5whmh5vfqydhf3b1r5ll1wkm3"; depends=[copBasic copula msm]; }; CopSens = derive2 { name="CopSens"; version="0.1.0"; sha256="0ljp2c25zmyiv88mdari08z9845y9niyg90a8vlq75im5w825w8a"; depends=[CVXR dplyr ggplot2 MASS pcaMethods tidyr tidyverse]; }; - CopernicusDEM = derive2 { name="CopernicusDEM"; version="1.0.2"; sha256="1jgvq1c86xgdyp17z1pmz01lfw5nsfc2x71pcn399vcgij5j1jrf"; depends=[doParallel foreach glue sf]; }; - CopernicusMarine = derive2 { name="CopernicusMarine"; version="0.0.9"; sha256="01nzjm8fyv1kd7y8c4qj4al80kq96a16w4k0df9kss0m0cz86mls"; depends=[crayon dplyr httr jsonlite leaflet purrr readr rvest sf stringr xml2]; }; + CopernicusDEM = derive2 { name="CopernicusDEM"; version="1.0.3"; sha256="073glifdcrg11ffnz1gim36800jn0saqdamqlda81q4a4lla7il5"; depends=[doParallel foreach glue sf]; }; + CopernicusMarine = derive2 { name="CopernicusMarine"; version="0.2.0"; sha256="0h8vr3kv5i17psnqaq9gs1r87fsji4z5d46lw0aln3hxrd40pc4r"; depends=[crayon dplyr httr2 leaflet purrr readr rlang rvest sf stringr tidyr xml2]; }; Copula_Markov = derive2 { name="Copula.Markov"; version="2.9"; sha256="18krq0q5i3j211g88sl153f1fa5crdcgclvl5lqawm7zykyzblh2"; depends=[]; }; Copula_Markov_survival = derive2 { name="Copula.Markov.survival"; version="1.0.0"; sha256="1sxg0ir39f4hj4m6imija0c88j513j6fflcp7xc0599iglwsrbvs"; depends=[survival]; }; Copula_surv = derive2 { name="Copula.surv"; version="1.2"; sha256="1sashpxwbw0a5q8qvs8pwgxk0h5d3njw7j4gqrc8fh7bx71bqq7l"; depends=[]; }; CopulaCenR = derive2 { name="CopulaCenR"; version="1.2.3"; sha256="1z1a9hrb5v784j46yc2dsbizbis8pb5zdbc4cky8yws7swiax5m1"; depends=[boot caret copBasic copula corpcor flexsurv foreach icenReg magrittr plotly pracma survival VineCopula]; }; CopulaDTA = derive2 { name="CopulaDTA"; version="1.0.1"; sha256="1a9v398yn7gflpnsrgzap8gy1b676ri1m3fwiv1jpc5l1cw154pm"; depends=[ggplot2 plyr reshape2 rstan]; }; - CopulaGAMM = derive2 { name="CopulaGAMM"; version="0.3.0"; sha256="02bimr8j8zmpdllr5w7p40cy0y3bxfnr24ns5sg8074jw08dfbrh"; depends=[matrixStats statmod]; }; + CopulaGAMM = derive2 { name="CopulaGAMM"; version="0.4.1"; sha256="1n5nbmmqz3jynqpv53kwha5s7h9h3br7y7b6798mskadvqc2x90k"; depends=[matrixStats statmod]; }; CopulaInference = derive2 { name="CopulaInference"; version="0.5.0"; sha256="10r2ni62fh6zl0im1n7apjf6kx2fprifn71rnaf7dh7xypdkqyw1"; depends=[doParallel foreach Matrix rvinecopulib]; }; CopulaREMADA = derive2 { name="CopulaREMADA"; version="1.5.1"; sha256="027007xrzd2m7pgv8ki901aaf2957ih1lqh881viyd8hbfcfaghy"; depends=[matlab mc2d statmod tensor]; }; CorBin = derive2 { name="CorBin"; version="1.0.0"; sha256="0mjvhj9cw21xjg96fz5bcyfxgwdw367l1942a38by77ylypdfq3y"; depends=[]; }; @@ -1006,9 +1027,9 @@ in with self; { Correlplot = derive2 { name="Correlplot"; version="1.0.8"; sha256="1hvnhb1qk4zqic8ngdk34hwp573s3al418gsq5ia3aklfd834f7d"; depends=[calibrate corrplot lsei MASS xtable]; }; Counterfactual = derive2 { name="Counterfactual"; version="1.2"; sha256="1spryxvnkdz728rl4nb7zlqhynnh0b4m7lnhq4i1n13gfsz1m5j4"; depends=[doParallel doRNG foreach Hmisc quantreg survival]; }; Counternull = derive2 { name="Counternull"; version="0.2.0"; sha256="137vnq4lk2z54x6dbbps8vpa6p5cx21wjriaq9sp5b2s39m6hi0m"; depends=[dplyr effsize ggplot2 randomizr tidyr]; }; - Countr = derive2 { name="Countr"; version="3.5.6"; sha256="0zmg0hy9h2rjj3a6h05q8xxg0q2q65agmpm0gxk0qjl97wrh1fcy"; depends=[boot car dplyr flexsurv Formula lattice lmtest MASS Matrix numDeriv optimx pscl RColorBrewer Rcpp RcppArmadillo Rdpack standardize VGAM xtable]; }; + Countr = derive2 { name="Countr"; version="3.5.7"; sha256="04aszf0nsmg62hq7h5k0991pacwkcn667i8nk2wp35xbamlgcpqs"; depends=[boot car dplyr flexsurv Formula lattice lmtest MASS Matrix numDeriv optimx pscl RColorBrewer Rcpp RcppArmadillo Rdpack standardize VGAM xtable]; }; CovCombR = derive2 { name="CovCombR"; version="1.0"; sha256="07yd0zbvc9db2jw6xigfhxnbkxwb3gxlmywadz7fs3rva2if2ffx"; depends=[CholWishart Matrix nlme]; }; - CovRegRF = derive2 { name="CovRegRF"; version="1.0.4"; sha256="0azwxcy9cbk3h5wln24l5dz42w259y5hzz3nfdga0zi915k8m3dg"; depends=[data_table data_tree DiagrammeR]; }; + CovRegRF = derive2 { name="CovRegRF"; version="1.0.5"; sha256="0qdaiqq1cwagzcpwziblrd2j0vzxriklxk38nc48fv3gky0ilq7y"; depends=[data_table data_tree DiagrammeR]; }; CovSel = derive2 { name="CovSel"; version="1.2.1"; sha256="02fsiykbg96ynqw25vfyrams7fs39xjmfhvb23zjbqb7ql6d0xdk"; depends=[dr MASS np]; }; CovTools = derive2 { name="CovTools"; version="0.5.4"; sha256="1bkqg3kzy2ahjqldcf6x55wkrmb4s6y72y9cj0jwb1fph0a1p3sm"; depends=[doParallel expm foreach geigen Matrix mvtnorm pracma Rcpp RcppArmadillo Rdpack shapes SHT]; }; Covid19Wastewater = derive2 { name="Covid19Wastewater"; version="1.0.1"; sha256="1cqr9phfn5b2lsy2bm4kcgqb1zq1f961w9063synbwk4jzz36ql7"; depends=[data_table dplyr forecast ggplot2 gridExtra partykit patchwork plotly plyr randomForest RcppRoll reshape2 rlang rsample scales signal tidyr tidyselect zoo]; }; @@ -1038,8 +1059,9 @@ in with self; { CustomerScoringMetrics = derive2 { name="CustomerScoringMetrics"; version="1.0.0"; sha256="166v0hbxy4xgbfqh7sx6zsrv4pghqpimx5xry3h2qwynnvr4ng1a"; depends=[]; }; CustosAscensor = derive2 { name="CustosAscensor"; version="0.1.0"; sha256="1axyhwf9rc9dvrrcrpmx69kp49nwb0an7csn9qbjmx9jwwav11l5"; depends=[]; }; CutpointsOEHR = derive2 { name="CutpointsOEHR"; version="0.1.2"; sha256="0r772zb7g10akcfnf2hnyvpvba4px9pgslyns7drmijdsh0ncnvj"; depends=[survival]; }; - Cyclops = derive2 { name="Cyclops"; version="3.3.1"; sha256="17njl7vz9gkwfnxhs95vqn1mfcklmdqg5wwsgjbm3px120b7c8mf"; depends=[Andromeda BH bit64 dplyr Matrix Rcpp RcppEigen rlang survival]; }; + Cyclops = derive2 { name="Cyclops"; version="3.4.0"; sha256="0rys8fcz96zy0kx2b3k0j48nj0ysr6pcvya9grb8c3wj9s12m752"; depends=[Andromeda bit64 dplyr Matrix Rcpp RcppEigen rlang survival]; }; CytOpT = derive2 { name="CytOpT"; version="0.9.4"; sha256="008qm2kzclp0sy4ys7y0dsc894qrn7mazz9216w97rs2sn7kcrzx"; depends=[ggplot2 MetBrewer patchwork reshape2 reticulate testthat]; }; + CytoSimplex = derive2 { name="CytoSimplex"; version="0.1.1"; sha256="0zknsizsh860hyij5zxpm3izfsiwnp7mshrrnk4fmxsjv9fcxahr"; depends=[ggplot2 Matrix plot3D Rcpp RcppArmadillo rlang]; }; CytobankAPI = derive2 { name="CytobankAPI"; version="2.2.1"; sha256="0zhvxgqlzwv98b6ccl33x6jp71a14ysdmcc5a3v0d97r8haq1g3v"; depends=[aws_s3 curl httr jose jsonlite uuid]; }; D2MCS = derive2 { name="D2MCS"; version="1.0.1"; sha256="0rjfjnh8gcbm83cwqk1yjrjv6jsrarr53c629bkg9zw7s5sm35nz"; depends=[caret devtools dplyr FSelector ggplot2 ggrepel gridExtra infotheo mccr mltools ModelMetrics questionr R6 recipes tictoc varhandle]; }; D3mirt = derive2 { name="D3mirt"; version="1.1.0"; sha256="1a7c2q1rm8yhdsszh4lg6nca8sfyyvba3v4gchdjll7660grpyr7"; depends=[mirt rgl]; }; @@ -1063,8 +1085,8 @@ in with self; { DArand = derive2 { name="DArand"; version="0.0.1.2"; sha256="1pwd5srrjy8mhs40k6g6x5j3vk9cr5hylk8sdyiiqalpq490nzqy"; depends=[]; }; DBEST = derive2 { name="DBEST"; version="1.8"; sha256="1a598g02hpfgv572gchllqkppynnsp4lx764jg0g66w3b66k0kdy"; depends=[zoo]; }; DBHC = derive2 { name="DBHC"; version="0.0.3"; sha256="0r9c2vjnrahi3kbg7gz3z9k1i8vdqc44rc6nq7xk1j2xs1s6wsxp"; depends=[ggplot2 reshape2 seqHMM TraMineR]; }; - DBI = derive2 { name="DBI"; version="1.1.3"; sha256="13a2656w5j9shpcwa7gj2szy7nk9sajjhlisi5wdpgd57msk7frq"; depends=[]; }; - DBItest = derive2 { name="DBItest"; version="1.7.3"; sha256="0749mg3yadbxyixpsicnyi10dmwdjr1f590gfdzfrnpyg1ih5drh"; depends=[blob callr DBI desc hms lubridate palmerpenguins R6 rlang testthat vctrs withr]; }; + DBI = derive2 { name="DBI"; version="1.2.0"; sha256="1g4c2qfyjwbjwbsczhk83xmx74764nn53gnqzb6xxrwqjbxj4dpn"; depends=[]; }; + DBItest = derive2 { name="DBItest"; version="1.8.0"; sha256="1k9ww5kcy2y3cxqi9pp00j0dfa82pfbph2gz5z42nykcam6w4dfx"; depends=[blob callr DBI desc hms lubridate magrittr nanoarrow palmerpenguins rlang testthat vctrs withr]; }; DBModelSelect = derive2 { name="DBModelSelect"; version="0.2.0"; sha256="1cbnypvcglbvlxdpr95yd65qfd56fhfx14gd0mr71jkkqhgmj0pk"; depends=[]; }; DBNMFrank = derive2 { name="DBNMFrank"; version="0.1.0"; sha256="1snnyc9dvlkxydx3n6mims1avbibkkmaf5z440s28ibf9a9l91wj"; depends=[NMF pmledecon]; }; DBR = derive2 { name="DBR"; version="1.4.1"; sha256="1gs9d1qmv4mcmryzzvmwbz6ycinhnxnkiv56l31mbqy50qjn9bi4"; depends=[coda MfUSampler]; }; @@ -1086,7 +1108,7 @@ in with self; { DClusterm = derive2 { name="DClusterm"; version="1.0-1"; sha256="04i9fyph2k3ffds0nv49371p8lw6dkzcf27pc98f99x0l6c8k5iq"; depends=[DCluster lme4 sp spacetime xts]; }; DDD = derive2 { name="DDD"; version="5.2.2"; sha256="178b4j67vvn3g22s45gx9aqch24fij34yywbpvign2dkhzahnqkn"; depends=[ape BH DEoptim deSolve expm Matrix phytools Rcpp RcppEigen SparseM subplex]; }; DDHFm = derive2 { name="DDHFm"; version="1.1.3"; sha256="1xkjbhqipz6kqd6kw9682q5sbrvbpq4jn8nms3cv63b8x9nl1k55"; depends=[lokern wavethresh]; }; - DDIwR = derive2 { name="DDIwR"; version="0.16"; sha256="1d88sj0hz5wvfa1kx9sd320nmd9j6g0g7x4wl0883k5i19p3azy7"; depends=[admisc declared haven readxl writexl xml2]; }; + DDIwR = derive2 { name="DDIwR"; version="0.18"; sha256="1gwyp4pwy6hs4hwpl5w106mrk0f9sfl8lgcqxr8f3l1hl9hc31sl"; depends=[admisc base64enc declared digest haven readxl writexl xml2]; }; DDL = derive2 { name="DDL"; version="1.0.2"; sha256="1scgg90njn8ahxdzbz1dyhr508hlipgaawk2pll0hk093abnqrlc"; depends=[glmnet Matrix]; }; DDM = derive2 { name="DDM"; version="1.0-0"; sha256="19g06qk3lzasj294x9wfij729mlq6ryvjqkn3rgl5xp1w0gx9wi2"; depends=[]; }; DDPM = derive2 { name="DDPM"; version="0.1.0"; sha256="04fkbaw297i76gj6n0avqchjxh32q4vlrxad8sn9wfzpq86j8ln2"; depends=[]; }; @@ -1107,6 +1129,7 @@ in with self; { DEoptimR = derive2 { name="DEoptimR"; version="1.1-3"; sha256="1526g3fzii8kcy29gy6gjvaw4k9cxxidq8bh7m4j485h0wdsdn4d"; depends=[]; }; DFA = derive2 { name="DFA"; version="0.9.0"; sha256="0nk8k6xxqbbk1zhq3xsm59azvkj9499vp92pjl9xygasarim90rl"; depends=[]; }; DFA_CANCOR = derive2 { name="DFA.CANCOR"; version="0.2.8"; sha256="1i0bf9w4f0djwqsmwjiyfxnvsj220bmk4vfvz3l4l0wmdxil9cda"; depends=[BayesFactor MVN]; }; + DFBA = derive2 { name="DFBA"; version="0.1.0"; sha256="12ywksp6zb2xkxvpmnvjpan9wllfzhngvwnsw6813z11jdhrhnpr"; depends=[]; }; DFD = derive2 { name="DFD"; version="0.1.0"; sha256="1msyfzcxrqz9wq675ml00sigsyg94wl36yw4759fkr1q99iggxcc"; depends=[gprofiler2 signatureSearch signatureSearchData stringr]; }; DFIT = derive2 { name="DFIT"; version="1.1"; sha256="1220ax93b9xwmq1crgl1fnf63gk72jqbra5b5q25wn6ynv1kilkx"; depends=[ggplot2 mirt msm mvtnorm simex]; }; DGCA = derive2 { name="DGCA"; version="1.0.3"; sha256="15n6nlnb20xzn4swcclyarfq7pq7rwmm2n0rv7m2q9jkxr9vp4w0"; depends=[matrixStats WGCNA]; }; @@ -1132,8 +1155,8 @@ in with self; { DIZtools = derive2 { name="DIZtools"; version="1.0.1"; sha256="0i42k7h82x9g0mha8ppk17h3srgfjgwb9ysnib80pkjnp59kmpa5"; depends=[cleaR config data_table logger magrittr parsedate R_utils]; }; DIZutils = derive2 { name="DIZutils"; version="0.1.2"; sha256="1kra2b1qbbs6yf5aqlianszqbybni4iqzks0gxg5hdmdzphzb0hb"; depends=[data_table DBI DIZtools Hmisc psych RJDBC RJSONIO RPostgres xml2]; }; DIconvex = derive2 { name="DIconvex"; version="1.0.0"; sha256="0bnrq9nmryshir6ll43nz20aaqmmw0zjvfml72cpwbvrma8a3qmz"; depends=[lpSolveAPI]; }; - DImodels = derive2 { name="DImodels"; version="1.2.1"; sha256="0w5kjmfiz3idvxrpsfazq4zqzh3sdrz928g2a5r754dk5bx0nai8"; depends=[hnp multcomp rootSolve]; }; - DIscBIO = derive2 { name="DIscBIO"; version="1.2.1"; sha256="152sh5g3vgcsyr93xmh3046fmpvy0vma45v4dplircpazxl33pji"; depends=[AnnotationDbi cluster fpc ggplot2 httr igraph impute mclust NetIndices org_Hs_eg_db philentropy png RColorBrewer rpart rpart_plot RWeka SingleCellExperiment statmod TSCAN tsne withr]; }; + DImodels = derive2 { name="DImodels"; version="1.3"; sha256="0fkflbv3ayhvwlixh4fpzx9fkz6hd6vzq2zdb3gzbr31nrfcdaxx"; depends=[hnp multcomp rootSolve]; }; + DIscBIO = derive2 { name="DIscBIO"; version="1.2.2"; sha256="0zr1lpfqn8q3xhh27aa59j5xq70fxhzkwqaqfi34zfsiqzb7cy6a"; depends=[AnnotationDbi cluster fpc ggplot2 httr igraph impute mclust NetIndices org_Hs_eg_db png RColorBrewer rpart rpart_plot RWeka SingleCellExperiment statmod TSCAN tsne vegan withr]; }; DJL = derive2 { name="DJL"; version="3.9"; sha256="0q82b35ln0ligxgnk726bn5cynh6sd529hk6v3prrzbvdnsrqxcg"; depends=[car lpSolveAPI]; }; DLASSO = derive2 { name="DLASSO"; version="2.0.2"; sha256="0xdygf6h89d9z4kqb46iqfxgdzq9dmkrxf9ypw78l4d8n9xx2gaa"; depends=[MASS]; }; DLL = derive2 { name="DLL"; version="1.0.0"; sha256="00xj6r1i4qhv0lq9ky88pw26nkc3ywhl23j9rsh2z5jn4dqpwpcg"; depends=[glmnet locpol MASS SAM]; }; @@ -1143,6 +1166,7 @@ in with self; { DMCfun = derive2 { name="DMCfun"; version="2.0.2"; sha256="1phzi3an03akf04q1j6s1dmqmfzg1r52ga7685wimcbxy4cbq323"; depends=[BH DEoptim dplyr pbapply Rcpp shiny tidyr]; }; DMLLZU = derive2 { name="DMLLZU"; version="0.1.1"; sha256="0ck87abcd5gkq69q1g5g0yshfhx94m3vgayvxgzgnkidn9mivx22"; depends=[caret gbm ISLR lmtest nnet randomForest rlang sandwich]; }; DMMF = derive2 { name="DMMF"; version="0.5.2.0"; sha256="0bda65253q45m9bj923zylafnlwnxwyyk730pjqynz11z8vyibj6"; depends=[raster]; }; + DMQ = derive2 { name="DMQ"; version="0.1.2"; sha256="1ygaqznvblzr3r1x7zl1l8sazh3sbs1zgagawwlwl42g8sdl57az"; depends=[DEoptim MASS Rcpp RcppArmadillo Rsolnp]; }; DMRMark = derive2 { name="DMRMark"; version="1.1.1"; sha256="15wr6j0v9kvbv8y6flkp4svfqy059ziv89nxv91vp0pjmavhpdlz"; depends=[ellipse MCMCpack mvtnorm]; }; DMRnet = derive2 { name="DMRnet"; version="0.4.0"; sha256="11niqsnkyrcwsirrsjp7gkdcjgdlddah92i5mndw4idadjg0cnrc"; depends=[glmnet grpreg hclust1d]; }; DMTL = derive2 { name="DMTL"; version="0.1.2"; sha256="0z6l1sylw4ib1mgqjnrmxh2q56vazg2i7xxiw1g4gm28iq44r2n0"; depends=[caret glmnet kernlab ks randomForest]; }; @@ -1162,12 +1186,13 @@ in with self; { DOS2 = derive2 { name="DOS2"; version="0.5.2"; sha256="0lcqk2fxfl5pdnxlpppqiqnyc23jyhp1kcxwci8ilagjv4djipmw"; depends=[MASS sensitivity2x2xk sensitivitymult sensitivitymv senstrat]; }; DOSPortfolio = derive2 { name="DOSPortfolio"; version="0.1.0"; sha256="1aw40xlwahzvikf31y4cbzdrlmgwg3y765bsjzlvc8wqrjig3ghs"; depends=[Rdpack]; }; DOT = derive2 { name="DOT"; version="0.1"; sha256="0qh5n57cp9c2n5yn59q4wggz82943pwfanp3kx869aba2x3sj30i"; depends=[V8]; }; - DOVE = derive2 { name="DOVE"; version="1.9"; sha256="1cw9p779wqs9sa17zadbibpjmnlqmw027p0hkpf4riwfmvkx6szh"; depends=[Rcpp RcppArmadillo survival]; }; + DOVE = derive2 { name="DOVE"; version="1.10"; sha256="1n37f0mb95d5r2vszfwwysnvn0xv9m85j3mpz7qzz5cp9fb9k38c"; depends=[Rcpp RcppArmadillo survival]; }; + DOYPAColors = derive2 { name="DOYPAColors"; version="0.0.1"; sha256="0d8xsnl910hmcvd38mqbdnl7nvx3y9f065y90dqq36pcqvrd57h1"; depends=[ggplot2]; }; DOvalidation = derive2 { name="DOvalidation"; version="1.1.0"; sha256="1mzws3w7djpxnfqxjcqwgia7p17kb0qlnzj6qcfg2m1vamb1cn2z"; depends=[]; }; DPBBM = derive2 { name="DPBBM"; version="0.2.5"; sha256="1qypxrcm3sb727lqb09ssjf3hblixqayw3qsyql01imrxwm609i2"; depends=[CEoptim gplots tmvtnorm VGAM]; }; DPP = derive2 { name="DPP"; version="0.1.2"; sha256="1qalcm4gwh03qpy07d0p323ccq8xmk04v6z30g7wg6ic613bqg7m"; depends=[coda Rcpp]; }; - DPQ = derive2 { name="DPQ"; version="0.5-6"; sha256="0vvxsca8w7mzscqqfaq5sfxqyfh8c9ja3499i6gf4q46aa1w215j"; depends=[sfsmisc]; }; - DPQmpfr = derive2 { name="DPQmpfr"; version="0.3-1"; sha256="0f3l6dhiqnlix5vdz65pnxic43hcd4xiz64sh3cp8xs8cbmlnqcw"; depends=[DPQ gmp Rmpfr]; }; + DPQ = derive2 { name="DPQ"; version="0.5-8"; sha256="0wdhx937dp2lmcqzf64jrbg7a20r6rjvdjrpyzn072r94zn2r4dz"; depends=[sfsmisc]; }; + DPQmpfr = derive2 { name="DPQmpfr"; version="0.3-2"; sha256="0inj9i876bx2d9pvbazl0q1x2anc4raknay4y9iqkqskm72pwkvp"; depends=[DPQ gmp Rmpfr sfsmisc]; }; DPpack = derive2 { name="DPpack"; version="0.1.0"; sha256="1kip6n4pxpk5byjdn5m6l8s5l49dvkh78wn6n85dri0c2snkvs17"; depends=[dplyr e1071 ggplot2 MASS nloptr R6 Rdpack rmutil]; }; DPtree = derive2 { name="DPtree"; version="1.0.1"; sha256="0d7zf695lwkx4gv50f08cbi3p3mjjay0qgrbmvybf9m15i4zmyd7"; depends=[MASS MCMCpack plyr Rdpack]; }; DQAgui = derive2 { name="DQAgui"; version="0.2.3"; sha256="1wizx8wdqkl5vzk0bmmgzcbih0flp8bvdgy252ybfi5m8x3xczvr"; depends=[data_table daterangepicker DIZtools DIZutils DQAstats DT jsonlite knitr lubridate magrittr parsedate shiny shinyalert shinydashboard shinyFiles shinyjs shinyWidgets waiter]; }; @@ -1191,14 +1216,14 @@ in with self; { DSI = derive2 { name="DSI"; version="1.5.0"; sha256="1q89abff6fypafs7w0jrcyh9prcv3ibwr0bym9zlav0lfdbqwhcq"; depends=[progress R6]; }; DSL = derive2 { name="DSL"; version="0.1-7"; sha256="05wj3zypr2kqfbka930qnwnk2r43pqi13pbs5n6lm8vdq4zjblw4"; depends=[]; }; DSLite = derive2 { name="DSLite"; version="1.4.0"; sha256="1xc9igwsxwiirg40br1qckai0lzhijfnpdrxg94r38hngb7r5cy2"; depends=[DSI R6 rly]; }; - DSMolgenisArmadillo = derive2 { name="DSMolgenisArmadillo"; version="2.0.0"; sha256="1py0xyrggm4clgczj270182dsq7cidvhfd3c3q1j4a7n4gy8fh3x"; depends=[base64enc DSI httr MolgenisAuth stringr urltools]; }; + DSMolgenisArmadillo = derive2 { name="DSMolgenisArmadillo"; version="2.0.5"; sha256="0bz0gkymd49sswwkj9hq9b6d0dcny74r70fsbpr2s189j5kx98ns"; depends=[base64enc DSI httr MolgenisAuth stringr urltools]; }; DSOpal = derive2 { name="DSOpal"; version="1.4.0"; sha256="1jhjk2anh5kc421r0l8v0s5cbnqhdwwiirk1zcmmgk62k3an0lsf"; depends=[DSI opalr]; }; - DSSAT = derive2 { name="DSSAT"; version="0.0.7"; sha256="182x5v9zfyq43kgysmb5qkr6zrmnrvvd1mfi25shcm488p982qfh"; depends=[dplyr glue lubridate magrittr purrr readr rlang stringr testthat tibble tidyr tidyselect]; }; + DSSAT = derive2 { name="DSSAT"; version="0.0.8"; sha256="04s4k7rbnk2xi73jiss8zaz777zz1bvirr8y4jbb72qvhi1jrrna"; depends=[dplyr glue lubridate magrittr purrr readr rlang stringr tibble tidyr tidyselect]; }; DSSP = derive2 { name="DSSP"; version="0.1.1"; sha256="1z4sfqlgqwhxhm8aryv5c3vlzamn9nx2c49dyi1axq4qpy7dg3pr"; depends=[mcmcse posterior Rcpp RcppArmadillo rust sp]; }; DSWE = derive2 { name="DSWE"; version="1.6.3"; sha256="1ch5svipjbwly1l29kp1jd1g4y6jkxl25095f038pzs0gcjxjb1h"; depends=[BayesTree dplyr e1071 FNN gss KernSmooth matrixStats mixtools Rcpp RcppArmadillo]; }; - DSjobtracker = derive2 { name="DSjobtracker"; version="0.1.1"; sha256="1vi07n7ygsdjj4830rnx7kvacmnizl146c6bfw2fnby47apg38f9"; depends=[]; }; + DSjobtracker = derive2 { name="DSjobtracker"; version="2.0.0"; sha256="09n7gxks3j2gx0yyzdnpxa6ncg2hv48v503z1d3qk3fwvcd6r0s1"; depends=[]; }; DSpoty = derive2 { name="DSpoty"; version="0.1.0"; sha256="18z8gk3zj7k2szxg9579qy5klrqjw6zsk5x9jmwrv4qhb98fyji6"; depends=[dplyr httr purrr stringr]; }; - DT = derive2 { name="DT"; version="0.30"; sha256="13k9zyapx6rqfsrl5afpgaqyni57qq88hxa1j3y3wjcv5bim66ig"; depends=[crosstalk htmltools htmlwidgets httpuv jquerylib jsonlite magrittr promises]; }; + DT = derive2 { name="DT"; version="0.31"; sha256="11wwd76x1bk9aswi8w4bmvbf51j8hlmb5gsyqzfjdi6ihjkl4vwm"; depends=[crosstalk htmltools htmlwidgets httpuv jquerylib jsonlite magrittr promises]; }; DTAT = derive2 { name="DTAT"; version="0.3-6"; sha256="0ll11763c03xll02727jwm637vbq438vivr88f45nbwrpsk9nb34"; depends=[data_table dplyr Hmisc jsonlite km_ci pomp r2d3 shiny survival]; }; DTAXG = derive2 { name="DTAXG"; version="0.1.0"; sha256="1jxa0ix0z35i0xdnjl698j8iqjmp6nz8ckah9bap5ay9rkq0xd7f"; depends=[]; }; DTAplots = derive2 { name="DTAplots"; version="1.0.2.5"; sha256="1jwfh8j8ahaj2z19g2f70r652j77q4f0b7j91mggsb0dgk449342"; depends=[]; }; @@ -1207,9 +1232,9 @@ in with self; { DTDA_cif = derive2 { name="DTDA.cif"; version="1.0.2"; sha256="12vkhqxdhir06s35kr76dwns9m02wyicz3mv4r56fqglsfyw77xr"; depends=[doParallel foreach Rcpp]; }; DTDA_ni = derive2 { name="DTDA.ni"; version="1.0.1"; sha256="0lv8k37n271zcmp5mxxc6z03bx283lnc4iz3zz1k2mnfzq2wrahz"; depends=[]; }; DTMCPack = derive2 { name="DTMCPack"; version="0.1-3"; sha256="1a07hpl1fagigxkd3yjjkwjpmjwbfyg9a7m8fcj1602xl525h2ki"; depends=[]; }; - DTRKernSmooth = derive2 { name="DTRKernSmooth"; version="1.0.0"; sha256="0faya9crhzw3z8r5va08g7nir9ga2g308lrxf4zbj6c84fkyfiwx"; depends=[Rcpp RcppArmadillo RcppEigen]; }; + DTRKernSmooth = derive2 { name="DTRKernSmooth"; version="1.1.0"; sha256="0ikq9rj7harlc00gj6wqc62pyj25ap9ajfh622b5cj5zkdrc8qy1"; depends=[Rcpp RcppEigen]; }; DTRlearn2 = derive2 { name="DTRlearn2"; version="1.1"; sha256="0l756zb1wkpa1z5zjkc8jndmh2630gckxxfqslabzjmgsjf7fjgm"; depends=[foreach glmnet kernlab MASS Matrix]; }; - DTRreg = derive2 { name="DTRreg"; version="1.7"; sha256="0fr2c8fg1acs2kk0r67zml5fp71mvxw116ixqf7yq34n9ljd5yph"; depends=[dplyr MASS]; }; + DTRreg = derive2 { name="DTRreg"; version="2.0"; sha256="0jz8mxfvcj60lkpw15wavlf771wl2knkjhbxpjp77vamnwhmbww8"; depends=[nnet R6]; }; DTSEA = derive2 { name="DTSEA"; version="0.0.3"; sha256="1f1di9ypq6f0929pq15xncf7zw16wlqap4rchbia27n39cv15dni"; depends=[BiocParallel dplyr fgsea igraph magrittr stringr tibble tidyr]; }; DTSg = derive2 { name="DTSg"; version="1.1.3"; sha256="0gln3zliljhs7rmqbyi7nbrzknc4g7psk9rwnd5xh020fa2k2cm1"; depends=[checkmate data_table R6]; }; DTWBI = derive2 { name="DTWBI"; version="1.1"; sha256="06lp4yc5nhacrgic78l014g2w1ibwgs8dp8zrahk5aripaczl25y"; depends=[dtw e1071 entropy lsa rlist]; }; @@ -1224,7 +1249,7 @@ in with self; { DYNATE = derive2 { name="DYNATE"; version="0.1"; sha256="172lm5k0hz774a0d2s1hs86q7q50s6n4i4ba8jddy3l5a1gqkpd4"; depends=[data_table dplyr Matrix reshape2 tibble tidyverse]; }; DamiaNN = derive2 { name="DamiaNN"; version="1.0.0"; sha256="09viy1lilz0b29s3myky03981bfnhxjxxgfhdah33cn5x682rbp4"; depends=[caret testthat]; }; DandEFA = derive2 { name="DandEFA"; version="1.6"; sha256="1ir1z76c8742vqdlwv35l4rhr0x7lhghz24g35zn7b30671lypf8"; depends=[gplots polycor]; }; - DanielBiostatistics10th = derive2 { name="DanielBiostatistics10th"; version="0.1.9"; sha256="1jf7k79q5a0nqy5abbnn9bdj7fnly4kfwm84n5mxng6s7lxfqzb3"; depends=[e1071 ggplot2 ggrepel latex2exp pracma scales]; }; + DanielBiostatistics10th = derive2 { name="DanielBiostatistics10th"; version="0.1.10"; sha256="0adaa1wm079mbikz5dd3f307s356iyckffbm0h3d8jcj335by6pr"; depends=[e1071 ggplot2 ggrepel latex2exp pracma scales]; }; Dark = derive2 { name="Dark"; version="0.9.8"; sha256="1f01aq4g50f07005c8k91cfy9hvl3fmb4yl2924d7512m3884xlv"; depends=[]; }; DarkDiv = derive2 { name="DarkDiv"; version="0.3.0"; sha256="0cjf5rpn4myd21rh04bk2gjk65rjx77mn8mxy4ym704fiycrsj87"; depends=[vegan]; }; Dasst = derive2 { name="Dasst"; version="0.3.4"; sha256="1q18wss5bla3hvhnvmwxpd8lbs6fpdkqf5bfiqva050hsdfq1fk7"; depends=[]; }; @@ -1240,12 +1265,13 @@ in with self; { DataSpaceR = derive2 { name="DataSpaceR"; version="0.7.6"; sha256="1asrslqmk4sjj99x8pb01yfrw57p64zc6klrk2ghz4g44fr9d0pq"; depends=[assertthat curl data_table digest httr jsonlite R6 Rlabkey]; }; DataVisualizations = derive2 { name="DataVisualizations"; version="1.3.2"; sha256="0y8mwgnh3cjapb97a0i4f16nrdhmkd80f6j7z0ivykgfka7jlbqr"; depends=[ggplot2 pracma Rcpp RcppArmadillo reshape2 sp]; }; DataViz = derive2 { name="DataViz"; version="0.2.8"; sha256="1dr5nvdzc63x9ymlysvv5i8b7zcffq13pa39q0ychdwr1s3x7vzw"; depends=[Rcpp tibble]; }; - DatabaseConnector = derive2 { name="DatabaseConnector"; version="6.2.4"; sha256="1y37rrq8h7w7g9dxx26d21bf8c5y5qhcpvhlr31h5ja3vm624aaa"; depends=[bit64 checkmate DBI dbplyr digest readr rJava rlang SqlRender stringr urltools]; }; + DatabaseConnector = derive2 { name="DatabaseConnector"; version="6.3.2"; sha256="1wl78a2jlyqdbdkq1bhw2ymv6d0dn6d38vym80khhclial76rnzp"; depends=[bit64 checkmate DBI dbplyr digest readr rJava rlang SqlRender stringr urltools]; }; DatabaseConnectorJars = derive2 { name="DatabaseConnectorJars"; version="1.1.0"; sha256="18m6ynj30r5xdy51b3s39h0jcz1k2wgka888skr6ds2233lhqk2w"; depends=[rJava]; }; DatabionicSwarm = derive2 { name="DatabionicSwarm"; version="1.2.1"; sha256="1qdm4na1s4wc8s7j9vp8g8l9lmhqlpzyafkjmm9jzl7wqlgz5ibr"; depends=[deldir GeneralizedUmatrix Rcpp RcppArmadillo RcppParallel]; }; DatastreamDSWS2R = derive2 { name="DatastreamDSWS2R"; version="1.8.2"; sha256="018733gm5z90qhbci6khxx27pn074si176mwnlq53bd6r722jiwm"; depends=[dplyr foreach httr jsonlite stringi stringr xts zoo]; }; DateTimeRangePicker = derive2 { name="DateTimeRangePicker"; version="1.1.0"; sha256="1g5gjbwb1h1407bwg5yzrpal2syk5439l73svsjjzs6y55dpixsg"; depends=[htmltools lubridate reactR shiny]; }; Davies = derive2 { name="Davies"; version="1.2-0"; sha256="0n2pqipv0b1w2zjvycms0kyk7h8ps49f5jlzgyxhy9dlyr0ivaml"; depends=[mathjaxr]; }; + DeBoinR = derive2 { name="DeBoinR"; version="1.0"; sha256="0brwk24q2wgmn38y1w1rish8dfdbv10xdzmm2k1drdwgsn72hxis"; depends=[dplyr ggplot2 gridExtra KernSmooth pracma]; }; DeCAFS = derive2 { name="DeCAFS"; version="3.3.3"; sha256="0dj32rck6ssyv82d8b75qgsqw319q02iqd3xxazy6251wcjn321i"; depends=[ggplot2 Rcpp robustbase]; }; DeRezende_Ferreira = derive2 { name="DeRezende.Ferreira"; version="0.1.0"; sha256="05c99z3hlwwm0p02cl9z6gjwfxfq2b2qn90l85270bi16llgf42h"; depends=[xts]; }; DebiasInfer = derive2 { name="DebiasInfer"; version="0.2"; sha256="02r1pc5s1vwnvz6cxb2gkc3x4x9vw8nb2zw1z8hyyxp5n8n8d2mf"; depends=[caret CVXR]; }; @@ -1269,7 +1295,7 @@ in with self; { DepLogo = derive2 { name="DepLogo"; version="1.2"; sha256="13y3akmrj5x1mn1sgha1jryzswg4kqxwswbm3m5z92mcm2zw4r9l"; depends=[]; }; DepthProc = derive2 { name="DepthProc"; version="2.1.5"; sha256="0i7fks5hglf3xj8cj3sghjf0xcldhiqwf0jlpyk2a3mj9gaszc76"; depends=[colorspace geometry ggplot2 lattice MASS np Rcpp RcppArmadillo rrcov sm zoo]; }; Deriv = derive2 { name="Deriv"; version="4.1.3"; sha256="130g3mv0z9sqs6y23a0a94512iiw05yr6fp378vhdxxbignzbnyv"; depends=[]; }; - DescTools = derive2 { name="DescTools"; version="0.99.50"; sha256="1awfhbv7klvkwxki4lvxj086yiwqyys95jnss8q5qqn7wyfz170v"; depends=[BH boot data_table Exact expm gld httr MASS mvtnorm Rcpp readxl rstudioapi withr]; }; + DescTools = derive2 { name="DescTools"; version="0.99.52"; sha256="147p9brnzyhibffq15wcn0dza3cx14w57b2zc9na8wmmc3wpv6cl"; depends=[boot cli data_table Exact expm gld httr MASS mvtnorm Rcpp readxl rstudioapi withr]; }; DescToolsAddIns = derive2 { name="DescToolsAddIns"; version="1.10"; sha256="0wgcfrxf2vygr7rylkbfzlgldg6llg4k4bzwrq8c73miwac158js"; depends=[DescTools foreign manipulate rstudioapi writexl]; }; DescrTab2 = derive2 { name="DescrTab2"; version="2.1.16"; sha256="07921k8h50wycj0sijy8428p3c8ach90swgzz0s06b6z1yl2mnyg"; depends=[cli DescTools dplyr exact2x2 flextable forcats haven Hmisc kableExtra knitr magrittr nlme officer rlang rmarkdown scales stringr tibble]; }; DescribeDF = derive2 { name="DescribeDF"; version="0.2.1"; sha256="1nah46s4psi272idpkpzkx7zqy6vr6wdz5zfxyz17cld9q2lld47"; depends=[dplyr e1071 fNonlinear psych tseries]; }; @@ -1295,8 +1321,8 @@ in with self; { DiagrammeR = derive2 { name="DiagrammeR"; version="1.0.10"; sha256="147q7zgwhd7vc0l134sqkkf6n6s6bznxvcmsrdx2f5df12bsixkj"; depends=[downloader dplyr glue htmltools htmlwidgets igraph magrittr purrr RColorBrewer readr rlang rstudioapi scales stringr tibble tidyr viridis visNetwork]; }; DiagrammeRsvg = derive2 { name="DiagrammeRsvg"; version="0.1"; sha256="0j2cm1mx3zrb2k3pcrb96z2z3kws61gyyjsjjv5rqcb5lzdgi65k"; depends=[V8]; }; DiallelAnalysisR = derive2 { name="DiallelAnalysisR"; version="0.5.0"; sha256="0w053vqp23hqixgn32g5d8a0l9hcxp6w2fm1sx3ysxr4p0yz7g14"; depends=[ggplot2]; }; - DiceDesign = derive2 { name="DiceDesign"; version="1.9"; sha256="1a8ixa65xgyfri03cviic8qi2plbhdyz8m02bwif8w94w0q3ghlk"; depends=[]; }; - DiceEval = derive2 { name="DiceEval"; version="1.5.1"; sha256="0k5z25x0bfvw9j75jwahmda1x89f2aarsxzfcv7pdz25ci8w8mnk"; depends=[DiceKriging]; }; + DiceDesign = derive2 { name="DiceDesign"; version="1.10"; sha256="0gf76f4jy8lbmw045q3ncs4ly07clh6gdfbmlnyk45wcgch3nm06"; depends=[]; }; + DiceEval = derive2 { name="DiceEval"; version="1.6.1"; sha256="02ba7cxp9hv983d3br4a1y3ss6krjax72vrpkp5qqy0v9fyshm23"; depends=[DiceKriging]; }; DiceKriging = derive2 { name="DiceKriging"; version="1.6.0"; sha256="0jfb2li6b93fkwgjkr4jwxnvv7zb0aqk9lkf2mnv2awzh0r16pdb"; depends=[]; }; DiceOptim = derive2 { name="DiceOptim"; version="2.1.1"; sha256="0qqvj97lzir6sgvshg13lr3c9yw1qybqh4m34kj37fk8gaab1py7"; depends=[DiceDesign DiceKriging mnormt pbivnorm randtoolbox rgenoud]; }; DiceView = derive2 { name="DiceView"; version="2.1-0"; sha256="1b0sx9ww42211kg0ghja8l8iqxlyqv57nzwnvnww1d2hbwr77ybp"; depends=[DiceDesign geometry R_cache scatterplot3d]; }; @@ -1304,13 +1330,14 @@ in with self; { DidacticBoost = derive2 { name="DidacticBoost"; version="0.1.1"; sha256="0z1h61n6nfjvb64fgkzi1sq7ag747crhh593hxkx0cpza29778rz"; depends=[rpart]; }; Diderot = derive2 { name="Diderot"; version="0.13"; sha256="04d1drxn99r0fqq3zym7yyip9c8rfqhghq20q4zyb42l3hfgv9ai"; depends=[data_table doParallel foreach igraph RCurl splitstackshape stringi]; }; DiffCorr = derive2 { name="DiffCorr"; version="0.4.3"; sha256="1wzk5lfkrz12xxmyapmq6midb6ld6p624i8qzf299dlfsz5i3n5h"; depends=[fdrtool igraph multtest pcaMethods]; }; + DiffNet = derive2 { name="DiffNet"; version="1.0.2"; sha256="1hil8p896vckgwmlr8vqkrwswclwh1hs8gxvk648gpahi1na1ssc"; depends=[assertthat igraph MASS]; }; DiffXTables = derive2 { name="DiffXTables"; version="0.1.3"; sha256="0a0q1fz80jlcrk4rw70yjb8djxgsm5axih45vi4dqpg6n8xlrzw2"; depends=[pander Rdpack]; }; DirStats = derive2 { name="DirStats"; version="0.1.9"; sha256="0cj3ba2dzy7nvvs98mzj0c37hdn4lhxhrir27bhqfrjnmz13z08w"; depends=[movMF rotasym]; }; - Dire = derive2 { name="Dire"; version="2.1.1"; sha256="1ccy1g600196qc4chnjcd6gffbhj6mzhc5kszpyb0w4szxmdag55"; depends=[foreach haven iterators MASS Matrix Rcpp RcppArmadillo]; }; + Dire = derive2 { name="Dire"; version="2.2.0"; sha256="140qqpp0vhqw0vmzff58sx51nj21x61z063j4j23nrdrl3ylamcv"; depends=[foreach haven iterators lbfgs MASS Matrix Rcpp RcppArmadillo]; }; DirectEffects = derive2 { name="DirectEffects"; version="0.2.1"; sha256="0cjqp4gam1psd11d6h99pi3ramnaybp6bij86wbgqji2icqlvghg"; depends=[Formula glue sandwich]; }; DirectStandardisation = derive2 { name="DirectStandardisation"; version="1.3"; sha256="1qlfvzlig3a2v78fiq6sbbpxklmjczikxdw57m6mqngzrl9vdl2g"; depends=[]; }; DirectedClustering = derive2 { name="DirectedClustering"; version="0.1.1"; sha256="1shdqz0c5bbgknvfqr3ais26cb5mpywnah3d3584w97sy8v7gxm2"; depends=[igraph]; }; - Directional = derive2 { name="Directional"; version="6.3"; sha256="0h9iqynmrifymv7jkd94nzxivp1s5yh55fysxd7i74i6lcwpx4rm"; depends=[bigstatsr doParallel foreach ggplot2 magrittr RANN Rfast Rfast2 rgl rnaturalearth sf]; }; + Directional = derive2 { name="Directional"; version="6.4"; sha256="0p22czrl2m9vzls58qvxih0g2pl36ffyqxd5n17wk9ilzj39f02j"; depends=[bigstatsr doParallel foreach ggplot2 magrittr Rfast Rfast2 rgl Rnanoflann rnaturalearth sf]; }; DirichletReg = derive2 { name="DirichletReg"; version="0.7-1"; sha256="1ql5mwb7zb06y9j6inrlngq7c15as4j17wd8kc71fxs0a2jdj7xi"; depends=[Formula maxLik]; }; DisHet = derive2 { name="DisHet"; version="1.0.0"; sha256="056jcs1qpiyadnmlzd0cj4kp0qzkichxi0pdnxypyq1fsqnpvan3"; depends=[gtools matrixStats]; }; DisImpact = derive2 { name="DisImpact"; version="0.0.21"; sha256="1vc2kwcb3cvcdbdg0s5qnjdzn8qa7lv6f86milhxdf609k2zwdkx"; depends=[collapse data_table DBI dplyr duckdb fst glue purrr rlang sets stringr tidyr tidyselect]; }; @@ -1320,10 +1347,9 @@ in with self; { DiscreteLaplace = derive2 { name="DiscreteLaplace"; version="1.1.1"; sha256="17w4vjvsm7jacvwckjczyah3hglq044r3m6vqdcrg8haz884rav2"; depends=[]; }; DiscreteQvalue = derive2 { name="DiscreteQvalue"; version="1.1"; sha256="1xl6m3sf02v4y26375jn846ixzcxpqim1r6d4j56y8b5c243jg4h"; depends=[]; }; DiscreteWeibull = derive2 { name="DiscreteWeibull"; version="1.1"; sha256="1rg3ax6jryagf5d3h8m44x9wyhr2qff3srfa9zrk6i64p1ahk9lr"; depends=[Rsolnp]; }; - Disequilibrium = derive2 { name="Disequilibrium"; version="1.1"; sha256="1jm5n01ih4rnga13058yh939zp2lvjn5pgb6rrwp5fdlk5kqsgb0"; depends=[Formula numDeriv optimr]; }; DisimForMixed = derive2 { name="DisimForMixed"; version="0.2"; sha256="00mknsalikangr17946877m5fy2jgkgasgl6ng4f2nr44f0q9l6q"; depends=[cluster dplyr]; }; DistPlotter = derive2 { name="DistPlotter"; version="0.0.2"; sha256="0aws4qs6802y42m07ca9m4i0lza282g6kfzx64q652y52md862gk"; depends=[colourpicker dplyr DT extraDistr ggplot2 rio scales shiny shinyalert shinyBS shinyjs shinyWidgets stringi stringr]; }; - Distance = derive2 { name="Distance"; version="1.0.8"; sha256="122855bynivgk3p60sglq8ffyznaa379z2pkgpl44wq9i6w50s39"; depends=[dplyr mrds rlang]; }; + Distance = derive2 { name="Distance"; version="1.0.9"; sha256="05krzbk1dzlsx00vaghz1ny0wf00giglwvdy29c3xa9353pfgyix"; depends=[dplyr mrds rlang]; }; DistatisR = derive2 { name="DistatisR"; version="1.1.1"; sha256="0r8gp84kbl8kbsw3kbp8sk0xc2gav074qc9qlkq06bp0sxycwhyw"; depends=[car dplyr prettyGraphs readxl tidytext]; }; DistributionOptimization = derive2 { name="DistributionOptimization"; version="1.2.6"; sha256="0pp0f7c9szyx426bnnz4fz4vh5q73m8x896z6pqgx04b6v445361"; depends=[AdaptGauss GA ggplot2 pracma]; }; DistributionTest = derive2 { name="DistributionTest"; version="1.1"; sha256="11xhr6yv42s1i4qqlb1pvzm8q2116v10gjlkhl0ml3id6lx27nmj"; depends=[MASS]; }; @@ -1332,13 +1358,13 @@ in with self; { DiversificationR = derive2 { name="DiversificationR"; version="0.1.0"; sha256="1gybzpv5bl17lp1nxhqzsvj585j3lylfd388vp401lmri3k8r4cs"; depends=[]; }; DiversityOccupancy = derive2 { name="DiversityOccupancy"; version="1.0.6"; sha256="16x3fpchgd12mccvr1k11vjka97sy5vjvjcyd5y3pskgnpycc2sv"; depends=[dplyr ggplot2 glmulti MuMIn qpcR raster unmarked vegan]; }; DoE_MIParray = derive2 { name="DoE.MIParray"; version="1.0-1"; sha256="0ginm4wqax2azcns4c17rgdfpclbmn058nq0lmpx90s4q7jfppax"; depends=[combinat DoE_base]; }; - DoE_base = derive2 { name="DoE.base"; version="1.2-3"; sha256="1m1vizrsmwcb6vwhbnrp9zm881pc1qqkkpb8k47nvj3f0j8pbf1m"; depends=[combinat conf_design lattice MASS numbers partitions vcd]; }; + DoE_base = derive2 { name="DoE.base"; version="1.2-4"; sha256="0lz0ilz145lhymb42b9yk4ysvm5zlbigc7ba600736cwnlgc0wn0"; depends=[combinat conf_design lattice MASS numbers partitions vcd]; }; DoE_wrapper = derive2 { name="DoE.wrapper"; version="0.12"; sha256="0n6z27gf7xcbyzjdq0kjm7ghddg5gygxyp3r9a7s5h40s0pfxbdm"; depends=[AlgDesign DiceDesign DoE_base FrF2 lhs rsm]; }; DoEstRare = derive2 { name="DoEstRare"; version="0.2"; sha256="0y9ymw7114jk1rwiasq400bpgvkxv6rpc954c7v9mgxd3c2nfza7"; depends=[]; }; DockerParallel = derive2 { name="DockerParallel"; version="1.0.4"; sha256="1fgs2f5czb05fiqxqp00qggni041ml4s3x05h9n4mmka9mwxi34b"; depends=[jsonlite]; }; Dodge = derive2 { name="Dodge"; version="0.9-2"; sha256="0767n6hyspqrv5cgx3ghhai0qffj6haga7s86pv7mq8zvjcxjlzv"; depends=[]; }; DominoDataR = derive2 { name="DominoDataR"; version="0.2.3"; sha256="1awiy32sm0n2v1z48v4agqm89jnkgqazbjh9zixmj7yd0db78a9v"; depends=[arrow ConfigParser httr reticulate]; }; - DoseFinding = derive2 { name="DoseFinding"; version="1.0-5"; sha256="0sccgwk4h9s5l1pw8yp8p55ad1w9q4n4mmqmkc8kgkjy39k2mrrc"; depends=[ggplot2 lattice mvtnorm]; }; + DoseFinding = derive2 { name="DoseFinding"; version="1.1-1"; sha256="052ic1d7qlcvcglzskdv97v7dnbi2lh8xpkbxf9srqn3sgs812n3"; depends=[ggplot2 lattice mvtnorm]; }; DoubleCone = derive2 { name="DoubleCone"; version="1.1"; sha256="1kbvsj93nn2306s6pgqiiznmlcn2nqsgcxinihl613ivczxhzpqg"; depends=[coneproj MASS Matrix]; }; DoubleExpSeq = derive2 { name="DoubleExpSeq"; version="1.1"; sha256="00xpj5xmpgmvp6h76imkmghrnlfk6c50ydvv0jram6m6ix3z8323"; depends=[numDeriv]; }; DoubleML = derive2 { name="DoubleML"; version="0.5.3"; sha256="1s1zpq5yz6l4b65p9mdpb91fsvhw6wifh3dvhwzyj7xn4nraaayv"; depends=[checkmate clusterGeneration data_table mlr3 mlr3learners mlr3misc mlr3tuning mvtnorm R6 readstata13]; }; @@ -1350,18 +1376,18 @@ in with self; { DramaAnalysis = derive2 { name="DramaAnalysis"; version="3.0.2"; sha256="0nsnwais0r592c50nphfzkr1bbygl67mriwsx7dxbvmpdsswlvl1"; depends=[data_table git2r httr readr reshape2 stringr tokenizers xml2]; }; DriftBurstHypothesis = derive2 { name="DriftBurstHypothesis"; version="0.4.0.1"; sha256="1pmsbv1rl79s520nxj536m8gf7xyfjskj8r88rxmxscbgp8c1xz2"; depends=[Rcpp RcppArmadillo xts zoo]; }; DrillR = derive2 { name="DrillR"; version="0.1"; sha256="0n7pim5kk0wfdjcc67v4vvdb7wyhn5bcgi2a12nbyfyydss7pk1g"; depends=[httr]; }; - DrugExposureDiagnostics = derive2 { name="DrugExposureDiagnostics"; version="0.4.7"; sha256="0s2wbf5i4awnw3ncs5pp6gwsgpqqdfl3a209vvgad7xnfhp9m0gh"; depends=[CDMConnector checkmate dplyr glue lifecycle magrittr rlang tidyr tidyselect]; }; + DrugExposureDiagnostics = derive2 { name="DrugExposureDiagnostics"; version="1.0.1"; sha256="0jda2clyamj88q0882z8mzymxadrq73f5cp4bv6d1ng5c6w0majh"; depends=[CDMConnector checkmate dplyr glue lifecycle magrittr rlang tidyr tidyselect]; }; DrugSim2DR = derive2 { name="DrugSim2DR"; version="0.1.1"; sha256="1sphg3imdyr71amwqzmzzp6h1ai2m6rm87l08mv70i6jlznwf9kr"; depends=[ChemmineR fastmatch igraph pheatmap reshape2 rvest sp tidyr]; }; - DrugUtilisation = derive2 { name="DrugUtilisation"; version="0.4.0"; sha256="107wisld0ps4q3acx3x09lr7kc10b6sryqlj2vp9di5wyiwq3gdf"; depends=[CDMConnector checkmate cli DBI dbplyr dplyr glue lubridate magrittr PatientProfiles purrr RJSONIO rlang tidyr]; }; + DrugUtilisation = derive2 { name="DrugUtilisation"; version="0.4.1"; sha256="14mqvd3xkdjn578jcj4ij0nk2lwd7j859fy8dk4p11nrrwcdg6a0"; depends=[CDMConnector checkmate cli DBI dbplyr dplyr glue lubridate magrittr PatientProfiles purrr RJSONIO rlang tidyr]; }; DstarM = derive2 { name="DstarM"; version="0.4.0"; sha256="0wm5kr2pkgbvh9svjq8zq46zn50hwf58rs3y1ybnwcfjc2q75h1s"; depends=[DEoptim ggplot2 Rcpp RcppArmadillo rtdists RWiener]; }; DtD = derive2 { name="DtD"; version="0.2.2"; sha256="1czspjdxjhbfk2df7wk0x3d1ilwrjqw4s4gdc4hq0gjcjqyx0c39"; depends=[checkmate Rcpp RcppArmadillo]; }; - Durga = derive2 { name="Durga"; version="1.1.0"; sha256="06mgkm749x1dvh6wqdrjb9x4sbywawyqnr3cpml04l5qgqmlcxjy"; depends=[boot RColorBrewer vipor]; }; + Durga = derive2 { name="Durga"; version="2.0"; sha256="0iq29ga1cn5fnnj1b90pprqcldygmy695si0vq4pr8d59q029ah9"; depends=[boot RColorBrewer vipor]; }; DySS = derive2 { name="DySS"; version="1.0"; sha256="1aa67m224bhzzg089rhxwqgbmwwq5py8ikix8khwraz5cnjz2f83"; depends=[ggplot2 gridExtra Rcpp RcppArmadillo]; }; Dykstra = derive2 { name="Dykstra"; version="1.0-0"; sha256="1rc1409ky0ysqr3ccq28yhbs94m6d0z2dfa66k4c7irxjvbagwz6"; depends=[]; }; DynClust = derive2 { name="DynClust"; version="3.24"; sha256="0nbbzx0ixblpcbjxx0gp7082nz6nh5vc2l5nzdfq1mqzlq9jy2xn"; depends=[]; }; - DynForest = derive2 { name="DynForest"; version="1.1.1"; sha256="08rqwhw08aqm1zqjcvma36z8nbp73jjmas1yn23zqv1hb76airsj"; depends=[cmprsk DescTools doParallel foreach ggplot2 lcmm pbapply pec prodlim stringr survival zoo]; }; + DynForest = derive2 { name="DynForest"; version="1.1.2"; sha256="1im9sb74swna27vazk366i4a61db7b0agaw499j9nh1a4pf4nsjl"; depends=[cmprsk DescTools doParallel doRNG foreach ggplot2 lcmm pbapply pec prodlim stringr survival zoo]; }; DynNom = derive2 { name="DynNom"; version="5.0.2"; sha256="1zs8chdw83qjsi5k1m9cvk48swqz3gadycmhk4prxmjzwcl5z4i1"; depends=[BBmisc compare dplyr ggplot2 magrittr plotly prediction rms shiny stargazer survival]; }; - DynTxRegime = derive2 { name="DynTxRegime"; version="4.14"; sha256="1mgpy3y2dcv27ph8a870fpcsav72asvh136m8k3d37b5whg4ag1c"; depends=[dfoptim kernlab modelObj rgenoud]; }; + DynTxRegime = derive2 { name="DynTxRegime"; version="4.15"; sha256="18hk5bc6bsdjdl4736sdk896zblyc8l3ipjii4x2jksngcjvszbb"; depends=[dfoptim kernlab modelObj rgenoud]; }; DynaRankR = derive2 { name="DynaRankR"; version="1.1.0"; sha256="1fzicainh1dm016cglm2x6j1i2g5r71vgrj0dnsflbxc5v426sqm"; depends=[dplyr rlang]; }; DynamicGP = derive2 { name="DynamicGP"; version="1.1-9"; sha256="00hf3r39b9xid129kzgdnwdfrwrspxkz7dydgna3c5lrl7670paz"; depends=[lhs]; }; DynareR = derive2 { name="DynareR"; version="0.1.4"; sha256="0ph57kwinv9nqla82glg0bj1iaqrnw2y8a8invq1qy9yabldl798"; depends=[knitr magrittr]; }; @@ -1372,20 +1398,21 @@ in with self; { EAinference = derive2 { name="EAinference"; version="0.2.3"; sha256="1kzcfya3z6rf1vqjn72yjymdhrn4dzgmwifh3w6k22cy5jxffzn4"; depends=[hdi limSolve MASS msm mvtnorm Rcpp RcppArmadillo]; }; EBCHS = derive2 { name="EBCHS"; version="0.1.0"; sha256="103k4y105dn8v5yb5xk520404sd7c05cxd9iwh2k2v18kbvg8pdp"; depends=[fda pracma]; }; EBEN = derive2 { name="EBEN"; version="5.1"; sha256="13cvdx2mg1jhymvq49wm2rm1pajsd4ji274r7zaklcwy4lw5bml4"; depends=[]; }; - EBMAforecast = derive2 { name="EBMAforecast"; version="1.0.3"; sha256="01v7v40h7pmm5h1rl63m7n0jfbb208qvzn5w563kfhlyamh84zm2"; depends=[abind gtools Hmisc plyr Rcpp separationplot]; }; + EBMAforecast = derive2 { name="EBMAforecast"; version="1.0.31"; sha256="01z4giwyx4ar7cfhgb5407pr1c9lrznj9rsx2y5x95g4hc35d3p9"; depends=[abind glue gtools Hmisc plyr Rcpp separationplot]; }; EBPRS = derive2 { name="EBPRS"; version="2.1.0"; sha256="14wal81cai08xr26fpc2w4ramr5jyv7vwfyqb5hzw3kqxx76y9xx"; depends=[BEDMatrix data_table ROCR]; }; EBglmnet = derive2 { name="EBglmnet"; version="6.0"; sha256="014rpci2lcrqaldir2ds1fvzbvkj6n00n9xzl5m0f60zzg9cckjm"; depends=[]; }; EBrank = derive2 { name="EBrank"; version="1.0.0"; sha256="1qzhrr3n2zv31mjp224b35324nr9nigzazyfv11j4zhwl1ipf632"; depends=[]; }; ECGofTestDx = derive2 { name="ECGofTestDx"; version="0.4"; sha256="0y8bw1k9spwxyzc7vsi2iblnmjsidxbybjrzzh2j6frjmv3rk4g1"; depends=[bootstrap orthopolynom]; }; ECLRMC = derive2 { name="ECLRMC"; version="1.0"; sha256="01z2hmbpb754s2rsvx3i5wf7kkkr2mvs2g89ih2bqrif7w5rmgyg"; depends=[softImpute]; }; ECOSolveR = derive2 { name="ECOSolveR"; version="0.5.5"; sha256="1izc8dwj438wpkmdmhwnnhkijz5skig4gwxgr6f1bzmj08bfv515"; depends=[]; }; - ECOTOXr = derive2 { name="ECOTOXr"; version="1.0.5"; sha256="0xah3kw58sm6j8vnpfsmw0lmrqqwbri2yqm6hph92qzq0a6rfsxg"; depends=[crayon dbplyr dplyr httr jsonlite lifecycle purrr rappdirs readr readxl rlang RSQLite rvest stringr tibble tidyr tidyselect]; }; + ECOTOXr = derive2 { name="ECOTOXr"; version="1.0.9"; sha256="0n5vfzg2drffw7yrbvi1rkhkydsmyd8v0scqqrx0cdx84y21l5fl"; depends=[crayon dbplyr dplyr httr2 jsonlite lifecycle purrr rappdirs readr readxl rlang RSQLite rvest stringr tibble tidyr tidyselect]; }; ECTSVR = derive2 { name="ECTSVR"; version="0.1.0"; sha256="1l4j1a25cssf2pindkqpzgr7a67brg5qxqk9ysy96vvbc74n8i6l"; depends=[urca vars WeightSVM]; }; ECTTDNN = derive2 { name="ECTTDNN"; version="0.1.0"; sha256="1ddwf040yp4c7nxvivml0xhad5qdc6jlf17c1lh4mssm5c0pp14w"; depends=[forecast urca vars]; }; ECctmc = derive2 { name="ECctmc"; version="0.2.5"; sha256="0prryvc17bm1xrhzlqk2w9nj181bg99j1dph3d36h0n1vfq1d7if"; depends=[Rcpp RcppArmadillo]; }; ECharts2Shiny = derive2 { name="ECharts2Shiny"; version="0.2.13"; sha256="0dq8ja4ydxnc7qx35qhh9ryqgi7ambwz6ka2821mmq3p994crswn"; depends=[jsonlite shiny]; }; ECoL = derive2 { name="ECoL"; version="0.3.0"; sha256="02j4yl6hi83f6m529r6n0gaz8wsy2pi0ncy2g95fjhs8ib0kfn4f"; depends=[cluster e1071 FNN igraph MASS]; }; EDA = derive2 { name="EDA"; version="1.3"; sha256="08zqykvga7w07iy00c94q03mrxmjv649ggk7lmksjzy5j3wgyb6d"; depends=[ggplot2]; }; + EDCimport = derive2 { name="EDCimport"; version="0.4.1"; sha256="1s1i7dxbr64487nwrwz65vvyb21fz1gbqa51jdqz8spbim328jvp"; depends=[cli dplyr forcats ggplot2 glue haven labelled purrr readr rlang stringr tibble tidyr tidyselect]; }; EDFtest = derive2 { name="EDFtest"; version="0.1.0"; sha256="1z6ayi0513ibyk0gjfxcd1rybp5374xhbf9zkkm669wdmfggx26h"; depends=[CompQuadForm rmutil]; }; EDISON = derive2 { name="EDISON"; version="1.1.1"; sha256="12cc13ng5fc4nm0nvqxqplpb2ycz4cln73xqkk85dka2fnpykjc7"; depends=[corpcor MASS]; }; EDIutils = derive2 { name="EDIutils"; version="1.0.3"; sha256="1rgk2bpfb98nd0zv4kabskm0zk9dz52swwf95h46vc2yb0kwapkw"; depends=[curl httr jsonlite xml2]; }; @@ -1400,15 +1427,17 @@ in with self; { EEMDlstm = derive2 { name="EEMDlstm"; version="0.1.0"; sha256="0cilmbk100gym5kaa7fq8bx0cdqa07xk82kxgxjf4k6gyzs39nlh"; depends=[BiocGenerics keras magrittr reticulate Rlibeemd tensorflow TSdeeplearning tsutils]; }; EESPCA = derive2 { name="EESPCA"; version="0.7.0"; sha256="0bj1wi1almj7rb7sad4i47mnfh4y83mbdd1x5clda6nd738adl2b"; depends=[MASS PMA rifle]; }; EFA_MRFA = derive2 { name="EFA.MRFA"; version="1.1.2"; sha256="0p1zkfwjch9y39r7hjccjk7vfbnfwpdak6jfjs1sdpqkjqiw3r86"; depends=[ggplot2 PCovR psych reshape2 scales]; }; - EFA_dimensions = derive2 { name="EFA.dimensions"; version="0.1.7.9"; sha256="0smcgd6g61fb3fshxfh7q055h6h11rh3q37mrc8yzfyg72y3461i"; depends=[EFAtools GPArotation mirt polycor psych]; }; + EFA_dimensions = derive2 { name="EFA.dimensions"; version="0.1.8.1"; sha256="0aprc5xzcl7p51qhkzcgh9yr0vb1270h5q9vdwmzlksx554cqcs9"; depends=[EFAtools GPArotation mirt polycor psych]; }; EFAtools = derive2 { name="EFAtools"; version="0.4.4"; sha256="1fzkmvadkcd88d81420lw9mhpmxbjymp4jada2c79bxq1h6b3mw2"; depends=[checkmate cli crayon dplyr future future_apply ggplot2 GPArotation lavaan magrittr progress progressr psych Rcpp RcppArmadillo rlang stringr tibble tidyr viridisLite]; }; EFAutilities = derive2 { name="EFAutilities"; version="2.1.3"; sha256="09835x3nk8nnr3ibiddc5hx2l0jylz15fwsy2wjmv6jdrs0j9vsy"; depends=[GPArotation MASS mvtnorm plyr]; }; EFDR = derive2 { name="EFDR"; version="1.3"; sha256="0mjf2r1aa5iyf4b9f50mb50h1rmhwdi3qyh235mihy3pj68195yn"; depends=[copula doParallel dplyr foreach gstat Matrix sp tidyr waveslim]; }; EFS = derive2 { name="EFS"; version="1.0.3"; sha256="1q8cf8dnxpv5s3lr9145y0wjhak4rz18dzah4xfs5qr4c8nlpl54"; depends=[party pROC randomForest ROCR]; }; + EGAnet = derive2 { name="EGAnet"; version="2.0.3"; sha256="0dizs77mcmzj44alpafd9jzdcyw1fkq1lqab7cj8a6znbvwndrl8"; depends=[dendextend future future_apply GGally ggplot2 ggpubr glasso GPArotation igraph lavaan Matrix network progressr qgraph semPlot sna]; }; EGRET = derive2 { name="EGRET"; version="3.0.9"; sha256="1if22yq5wyfd0sx5b38xw3fbj8qlmbnkikjq77ihxd3pzfjpdl14"; depends=[dataRetrieval fields foreach MASS survival truncnorm]; }; EGRETci = derive2 { name="EGRETci"; version="2.0.4"; sha256="1g01a03smn5yp261cyk3x310m1mcv4bqyh8y123wam9gpa7dxrp6"; depends=[binom EGRET]; }; EGRNi = derive2 { name="EGRNi"; version="0.1.6"; sha256="0wgdhlmnch6gpypqlwd5z56ia03lbbimr4ci9gcfs8f881dh92dy"; depends=[fdrtool gdata MASS readr]; }; EHR = derive2 { name="EHR"; version="0.4-11"; sha256="0iz69bk5l164c7qpmnwlbrpxn99d8jm0x6hck2bj8jd52q4kvfvi"; depends=[data_table lubridate pkdata]; }; + EHRtemporalVariability = derive2 { name="EHRtemporalVariability"; version="1.2.0"; sha256="1cf2wgw3xxf2b02gpb9jak4r27l52rny7n94icqmn1rkn97xc210"; depends=[dplyr lubridate MASS plotly RColorBrewer scales viridis xts zoo]; }; EIAapi = derive2 { name="EIAapi"; version="0.1.2"; sha256="1vyl7zm8vwqcs57b8sw9vkwc1p123kcz2d2xldg6p2vfkgi91jw1"; depends=[data_table dplyr jsonlite lubridate]; }; EIX = derive2 { name="EIX"; version="1.2.0"; sha256="02ry0aqqnd0zh6zbvx1dbq3sdahyqcgabhkvbbw4ig0qk70w62aj"; depends=[DALEX data_table ggiraphExtra ggplot2 ggrepel iBreakDown MASS purrr scales tidyr xgboost]; }; EKMCMC = derive2 { name="EKMCMC"; version="1.1.2"; sha256="0filw1xikbv55h7xswlqifd30d43b9y3h2m6i0zv8v54y8mmszfg"; depends=[numDeriv]; }; @@ -1421,6 +1450,7 @@ in with self; { ELT = derive2 { name="ELT"; version="1.7"; sha256="1ngpcrnzkx9svwglfd6pzz46frjvvckcfbm5g5myxi63raljfc8c"; depends=[lattice latticeExtra locfit xlsx]; }; ELYP = derive2 { name="ELYP"; version="0.7-5"; sha256="1j2vwcs443x3pf4zypyvbkn8fb5if9b9hf1s821jjjpgach573sc"; depends=[survival]; }; EM_Fuzzy = derive2 { name="EM.Fuzzy"; version="1.0"; sha256="0sz4zkjn6rdzdqmkq6j24bd4sj91y5lan31bldxdfskgz0jpzhbr"; depends=[DISTRIB FuzzyNumbers]; }; + EMAR = derive2 { name="EMAR"; version="1.0.0"; sha256="1i0jmxp1fckqvah6a08pgvn92dwg052bra3vp5wmwakk56cbyqih"; depends=[]; }; EMAS = derive2 { name="EMAS"; version="0.2.2"; sha256="07y15nbym69iwdy9c5gcdalign7g8qw8hkcy1v29z6j2di6qzn84"; depends=[ggplot2 IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 lavaan mediation minfi multilevel qqman]; }; EMAtools = derive2 { name="EMAtools"; version="0.1.4"; sha256="0gx55ddw7dz1lm599i0gj15dlc3m58a8rf223hiykszb5c8bi372"; depends=[anytime DataCombine ggplot2 lmerTest plyr sjstats]; }; EMCluster = derive2 { name="EMCluster"; version="0.2-15"; sha256="1p8zfavx9waz3n4nkz8f6cd5hlcjb53r4wiwnrll5dx8zpfjj8g2"; depends=[MASS Matrix]; }; @@ -1444,7 +1474,6 @@ in with self; { EMbC = derive2 { name="EMbC"; version="2.0.4"; sha256="03vsyzq4zgv64yzazplj1sm3kgw0pdildcvi8w88b3d0rkjnhn5m"; depends=[mnormt RColorBrewer Rcpp RcppArmadillo sp suntools]; }; EMpeaksR = derive2 { name="EMpeaksR"; version="0.3.1"; sha256="0hzw4hnisqa13h75faq4hdsmg3y6dlmfknbkql4mbdx4s3qb19fv"; depends=[]; }; ENMeval = derive2 { name="ENMeval"; version="2.0.4"; sha256="1lb4bgnvig1sb88nfgylzps6kkw0jb5lz46yrqqk3ax71x33r7vd"; depends=[dismo doParallel doSNOW dplyr foreach ggplot2 glmnet magrittr maxnet rangeModelMetadata raster rlang tidyr]; }; - EPGMr = derive2 { name="EPGMr"; version="1.0.0"; sha256="1ii4lccv4hyydy3sd5l7c22pgx27x3mdml20sfbdj85pmpyab6q9"; depends=[]; }; EPLSIM = derive2 { name="EPLSIM"; version="0.1.0"; sha256="0x495638nh0n0k3i80vs7bcbdrgvw5fkib8dvwwgzgdgb419hakm"; depends=[ciTools ggplot2 MASS]; }; EPT = derive2 { name="EPT"; version="0.7.6"; sha256="1hkisfisi63dd9lai662y387av1g77fkbai0p2a346n8zgahysji"; depends=[]; }; EPX = derive2 { name="EPX"; version="1.0.4"; sha256="0d0qddk4c835gkh4lydaypxzakjz3qw9ai7y35kbaflj08fismc6"; depends=[doParallel doRNG foreach nnet randomForest rngtools]; }; @@ -1462,10 +1491,11 @@ in with self; { ETC = derive2 { name="ETC"; version="1.5"; sha256="16ciff8bf2p56941r83y7405sp5pfms63dwjd232ih3mnznjpc0f"; depends=[mvtnorm]; }; ETLUtils = derive2 { name="ETLUtils"; version="1.5"; sha256="0s0q4f3wzpdd87l3pnzysa8aq7zgz29589xnm65a6xfy9znbpzs3"; depends=[bit ff]; }; EUfootball = derive2 { name="EUfootball"; version="0.0.1"; sha256="0h36cqi752zs32gs55rdniabldr8jph7gc1y2yb9983cl4mfrjv0"; depends=[]; }; - EVI = derive2 { name="EVI"; version="0.1.1-4"; sha256="1lmcz8k88aahqdjw5nw3pgns9nn1dy30hkm505c1ilaiziwpdi6d"; depends=[cowplot ggplot2]; }; + EVI = derive2 { name="EVI"; version="0.2.0-0"; sha256="0q910z7xnvl8b0d0gw17hrz5fzxbsx9ij30z98sfdz6xglizg3kx"; depends=[cowplot ggplot2]; }; EValue = derive2 { name="EValue"; version="4.1.3"; sha256="0ip4cyipbs6g0znrdh5zs4xizmqgdznq8riggkgyv06wipgx9a2j"; depends=[boot dplyr ggplot2 metadat metafor MetaUtility]; }; EWGoF = derive2 { name="EWGoF"; version="2.2.2"; sha256="19gd9grjjdv6hilqj41g5qhz7m0ga40q88clwggbp5f0f1yd5sym"; depends=[Rcpp]; }; EWS = derive2 { name="EWS"; version="0.2.0"; sha256="0rkxnc5pwrjgm2j201rg0z4nqb75rpkqh3hff4lvw1zmnr9flm6r"; depends=[numDeriv]; }; + EWSmethods = derive2 { name="EWSmethods"; version="1.2.1"; sha256="0019n55534xcmkn78bsvdwjkk44qz8dmbljlswmmxnp685i9qir4"; depends=[dplyr egg foreach forecast ggplot2 gtools infotheo mAr moments rEDM reticulate scales seasonal tidyr zoo]; }; EXPARMA = derive2 { name="EXPARMA"; version="0.1.0"; sha256="120w491g925vzxriinfsgxs4kgx58dy4awb2knichsa4p1w5gvly"; depends=[forecast]; }; EXRQ = derive2 { name="EXRQ"; version="1.0"; sha256="1iqsr52sl2j5q03122a7rsp6n6a2bkysk2r908c89l36gk4sj2i5"; depends=[mnormt quantreg]; }; EZtune = derive2 { name="EZtune"; version="3.1.1"; sha256="0scslbgbbwma7sr0w9awg58ly5jwn877xsk6q1gq0ss3rd17pmfk"; depends=[ada BiocStyle e1071 GA gbm glmnet optimx ROCR rpart]; }; @@ -1479,7 +1509,7 @@ in with self; { Ecfun = derive2 { name="Ecfun"; version="0.3-2"; sha256="1q0mx70hy18rabpabxghaixkb3r1432cxln844cac4dqxhvzcqgy"; depends=[BMA fda jpeg MASS mvtnorm rvest stringi TeachingDemos tis xml2]; }; EcoDiet = derive2 { name="EcoDiet"; version="2.0.0"; sha256="1lgjymm2anb7f11gvg0875wyjjfzbh0y1vwinbidpn2kmgm9b05h"; depends=[coda ggmcmc ggplot2 jagsUI]; }; EcoEnsemble = derive2 { name="EcoEnsemble"; version="1.0.5"; sha256="0d5kha5i49p7fd8g4f1i999sag4jz8if6yashshr9hp6jr6mibpc"; depends=[BH cowplot dplyr ggplot2 matrixcalc Rcpp RcppEigen RcppParallel reshape2 rstan rstantools StanHeaders tibble]; }; - EcoIndR = derive2 { name="EcoIndR"; version="1.9"; sha256="09d7gka9h700fyryvkrb6jlk7ci341mwvvyd3hfy0nzx21jcpckb"; depends=[FD picante Rarity splancs vegan]; }; + EcoIndR = derive2 { name="EcoIndR"; version="2.0"; sha256="0wsr3lmmg6rph6mlq6mrwlal4ph65ps5vyqkglbzb67xz7kc1hz5"; depends=[FD picante Rarity splancs vegan]; }; EcoNetGen = derive2 { name="EcoNetGen"; version="0.2.4"; sha256="0ljihc60b3k25hn3z09arql2y0byhxx4mljm2w4m8f3micqfwzfw"; depends=[ggplot2 igraph]; }; EcoTroph = derive2 { name="EcoTroph"; version="1.6.1"; sha256="0nrq6n7amz8l6rk0wfyrih7rkic96yc02rpk4szis81v7yvm7346"; depends=[XML]; }; EcoVirtual = derive2 { name="EcoVirtual"; version="1.1"; sha256="1aryl2sb5ak390lgnm427ilm6xv9lmsjhwdnapzc033zvqb099gj"; depends=[]; }; @@ -1488,7 +1518,7 @@ in with self; { EconGeo = derive2 { name="EconGeo"; version="2.0"; sha256="0yf3hwgj2crpm8nm4whc1cygrql4v2n0s1ziwpl6k2rxbyibaj1w"; depends=[Matrix reshape]; }; EcotoneFinder = derive2 { name="EcotoneFinder"; version="0.2.3"; sha256="1liqjakzg4c5kgjiir8i4fp4ax0737lfwriz277crh9p3jn3dgmh"; depends=[cluster colorspace corrplot e1071 ggplot2 igraph philentropy plyr purrr qgraph reshape rlang Rmisc vegan vegclust withr]; }; Ecume = derive2 { name="Ecume"; version="0.9.1"; sha256="093yx24hckgwvkdjgir33lkc7hhiv4is8a4a7fdcrp46iszx0b4i"; depends=[caret dplyr e1071 kernlab magrittr pbapply spatstat spatstat_geom transport]; }; - EdSurvey = derive2 { name="EdSurvey"; version="4.0.1"; sha256="0cwd0mnikm31drjzg1jr2jshlp71jc1xcpi3yyw0rkbx8f3wna3v"; depends=[car data_table Dire Formula glm2 haven LaF lfactors lifecycle lme4 MASS Matrix NAEPirtparams NAEPprimer quantreg readxl tibble wCorr WeMix xml2 xtable]; }; + EdSurvey = derive2 { name="EdSurvey"; version="4.0.4"; sha256="1qp2mj9x8jk3za9m86890h1261vc7z621myv2i1kjyli3afmbm3p"; depends=[car data_table Dire Formula glm2 haven LaF lfactors lifecycle lme4 MASS Matrix NAEPirtparams NAEPprimer quantreg readxl tibble wCorr WeMix xml2 xtable]; }; EffectLiteR = derive2 { name="EffectLiteR"; version="0.4-6"; sha256="0h8cbpcnwxll5asjfay06zzh7imzqxbiv5b8iv4wbdkzwh68830r"; depends=[car foreign ggplot2 lavaan nnet shiny]; }; EffectStars = derive2 { name="EffectStars"; version="1.9-1"; sha256="131w5bdc615gaa2czi4wyc2f96jcg24ahcmggajrvyhxmi6rag5x"; depends=[VGAM]; }; EffectStars2 = derive2 { name="EffectStars2"; version="0.1-3"; sha256="0yh4krqjh1jb7gjxb9z4f5bzarps0g9jfqbbva782a881dhcdl1x"; depends=[miscTools VGAM]; }; @@ -1506,7 +1536,7 @@ in with self; { EmiR = derive2 { name="EmiR"; version="1.0.4"; sha256="1xhsf9n5af6z7v62vpnqjlp20s6fp7jf1wmgxgv77hxm4g5cm0q7"; depends=[data_table dplyr gganimate ggplot2 mathjaxr plot3D Rcpp RcppProgress Rdpack tibble tictoc tidyr]; }; EmiStatR = derive2 { name="EmiStatR"; version="1.2.3.0"; sha256="1cwzzkynhnpjd1slnifdmkrshfpv99ryilxj27f98kwgbnb6i81a"; depends=[doParallel foreach lattice xts zoo]; }; EmissV = derive2 { name="EmissV"; version="0.665.6.6"; sha256="184992191pk82q9yd0wb00r94rw7f23di7ckb86gbsr1pr1dkabl"; depends=[data_table ncdf4 raster sf units]; }; - EmpiricalCalibration = derive2 { name="EmpiricalCalibration"; version="3.1.1"; sha256="11kam8scb5hbp6bfk41xwjfmrwnvwaba2xksjsw1rdlrfbljs8p1"; depends=[ggplot2 gridExtra Rcpp rlang]; }; + EmpiricalCalibration = derive2 { name="EmpiricalCalibration"; version="3.1.2"; sha256="013k43mwsjr5sgrvcp9dqcpylls0qm3ppn7xbgw7l46w22yik5hi"; depends=[ggplot2 gridExtra Rcpp rlang]; }; EncDNA = derive2 { name="EncDNA"; version="1.0.2"; sha256="0wy2cmcvyqjhg5mqbvdzmihfv8swx7ym2n9mjdqgx0kgnc7k614y"; depends=[Biostrings]; }; EnergyOnlineCPM = derive2 { name="EnergyOnlineCPM"; version="1.0"; sha256="1a3wvclqdwcvq5inhliwjnd7xzqbjvzs8h8ncy6qlhjq6s5n7nm8"; depends=[energy MASS]; }; EngrExpt = derive2 { name="EngrExpt"; version="0.1-8"; sha256="0zclvckj2i7j4kfs58hcjcl722vl2y6dcnjz238cjfgwv279gqhp"; depends=[lattice]; }; @@ -1539,7 +1569,7 @@ in with self; { EpiReport = derive2 { name="EpiReport"; version="1.0.2"; sha256="1dh9rjdjgmwzvfslzgnmd37ipj7ydbn4pnngz4sw7nknqy7r4dpx"; depends=[dplyr flextable ggplot2 officer png tidyr tidyselect zoo]; }; EpiSemble = derive2 { name="EpiSemble"; version="0.1.1"; sha256="021cp01wc3m3mhallzszlwd07pjdylgp980978qm35ylasl7z3b5"; depends=[Biostrings caret devtools doParallel e1071 entropy foreach ftrCOOL gbm iterators party randomForest seqinr splitstackshape stringr tibble tidyverse]; }; EpiSignalDetection = derive2 { name="EpiSignalDetection"; version="0.1.2"; sha256="17mawnx3c87kgfa7aj42a7db9c1ciyxdfgka9sgx6lc0yw5249as"; depends=[dplyr ISOweek rmarkdown shiny surveillance]; }; - EpiStats = derive2 { name="EpiStats"; version="1.6-1"; sha256="02pp2b78hznm5n2ngk4bvgc7amwi32406fxvn52mbbvlpb8pjm0d"; depends=[dplyr epiR]; }; + EpiStats = derive2 { name="EpiStats"; version="1.6-2"; sha256="1smzy6hvpiiysz9b9dxswmhdx36fy3cfbqpd2hyh24vxvr11ynlr"; depends=[dplyr epiR]; }; EpiTest = derive2 { name="EpiTest"; version="1.0.0"; sha256="0fr6lkn1782x9q91y12idbzsh40xz5vzqfag259g6p8m3gyjiq25"; depends=[dplyr ggplot2 ggrepel magrittr MM4LMM purrr stringr]; }; EpistemicGameTheory = derive2 { name="EpistemicGameTheory"; version="0.1.2"; sha256="0b2gnrvhlsw85qv63ib32pj55l7w63wgvbrj5rb209g6h46fby8m"; depends=[lpSolve]; }; Equalden_HD = derive2 { name="Equalden.HD"; version="1.2"; sha256="1lwqnm2xg7x79xajjb4fx5b5yaqs0rn8myb2h52pfgm0v37lzvmb"; depends=[]; }; @@ -1564,7 +1594,7 @@ in with self; { EventStudy = derive2 { name="EventStudy"; version="0.39.2"; sha256="1z12nrkmpsv5cgm97g36vbwfdf0m1abfmwfln4xhy38d0qs61zi9"; depends=[curl data_table dplyr ggplot2 httr jsonlite magrittr miniUI purrr RColorBrewer readr rlang rstudioapi scales shiny stringr testthat tidyr]; }; EventWinRatios = derive2 { name="EventWinRatios"; version="1.0.0"; sha256="1hsq4g7hh71lzxzkmhm15mk3xpxaq75rqhgslf4qif6x7pm0p859"; depends=[]; }; EvidenceSynthesis = derive2 { name="EvidenceSynthesis"; version="0.5.0"; sha256="0zyah27p1j7sxpcgpr05ws1whw7dd876nzygcvh5pyiikkahfmcm"; depends=[BeastJar coda Cyclops dplyr EmpiricalCalibration ggdist ggplot2 gridExtra HDInterval meta rJava rlang survival]; }; - EviewsR = derive2 { name="EviewsR"; version="0.1.5"; sha256="0dybfkpg5zr6bh84dh7v4vyxk4xv09v9hv8ijxj0h41mi5zpqap9"; depends=[knitr magrittr xts zoo]; }; + EviewsR = derive2 { name="EviewsR"; version="0.1.6"; sha256="1sdhv9gra2rmp63fil61lq61a2jlfhajxd4nicvag11cnar880js"; depends=[knitr magrittr xts zoo]; }; EvoPhylo = derive2 { name="EvoPhylo"; version="0.3.2"; sha256="1jgvvi355dxrjqniwcga7gzfj0jw3hgwbii2cv055rq9z5f442mr"; depends=[ape cluster deeptime devtools dplyr ggplot2 ggrepel ggtree patchwork Rtsne treeio unglue]; }; EvolutionaryGames = derive2 { name="EvolutionaryGames"; version="0.1.2"; sha256="0aaqd4q8imm2wgkgdpwwdl6nxgr3apgb3l24f2lwxgv2y045309d"; depends=[deSolve geometry ggplot2 interp MASS reshape2]; }; Evomorph = derive2 { name="Evomorph"; version="0.9"; sha256="1br2fyggwz2mxpic8sk384xq1lpbpv0j5gf6xyzhkn2n7kfpf6d5"; depends=[geomorph ggplot2 reshape2 stringr]; }; @@ -1589,7 +1619,7 @@ in with self; { ExpDes = derive2 { name="ExpDes"; version="1.2.2"; sha256="145x7zzhgs7rqbamsfwcxlhppxmy9l6v4a1wximac8qgp7i0wdpi"; depends=[stargazer]; }; ExpDes_pt = derive2 { name="ExpDes.pt"; version="1.2.2"; sha256="05s7j3afs97x0k4w9rsjic1519ilzri250x5rl6l6smqivjaplci"; depends=[stargazer]; }; ExpGenetic = derive2 { name="ExpGenetic"; version="0.1.0"; sha256="096cxaqbc9y0bnj70fxk94585c880020pqqcx0dwwj839qkry4ha"; depends=[DESeq2 futile_logger ggplot2 ggsci plyr VennDiagram]; }; - ExpImage = derive2 { name="ExpImage"; version="0.8.0"; sha256="1c54lgz2206bilqxhy8s7r19vnnkahw3h6bhp8h6bzbx5d7714iv"; depends=[crayon doParallel foreach ggplot2 progress randomForest raster rstudioapi schemr]; }; + ExpImage = derive2 { name="ExpImage"; version="0.9.0"; sha256="1f6pddzfwmpv0gnzbpbkqzg6scafzjmpicblqz3m36nnj87l9pn7"; depends=[crayon doParallel foreach ggplot2 progress randomForest raster rstudioapi schemr]; }; ExpRep = derive2 { name="ExpRep"; version="1.0"; sha256="0spv3wd9c8sr338n5kdzrs28yh7s90fl70wsdnkibmlxhnh3ay3g"; depends=[]; }; ExpertChoice = derive2 { name="ExpertChoice"; version="0.2.0"; sha256="1pd4v240ywc4wzh249axxb4kz5dccizc08jdjnaygz35hjdg5hvj"; depends=[DoE_base dplyr far purrr rlist]; }; ExplainPrediction = derive2 { name="ExplainPrediction"; version="1.3.0"; sha256="14m3b9fsrpfpr8avsnhl8b3bzk2xlhwgkwag5iq8bj7bzvv4yck1"; depends=[CORElearn semiArtificial]; }; @@ -1597,6 +1627,7 @@ in with self; { ExposR = derive2 { name="ExposR"; version="1.1"; sha256="0vsjq1l1kjzhqmixdqsv960riqglc0sg5lp7y27j0k54frnkbxik"; depends=[terra]; }; ExtDist = derive2 { name="ExtDist"; version="0.7-2"; sha256="0wramjs7s2nxgjb2k30jgbbpf7pj4a1gzzqx8p1qh4pskh15msfm"; depends=[numDeriv optimx]; }; ExtMallows = derive2 { name="ExtMallows"; version="0.1.0"; sha256="0903jslp74s1vzbklq88y2dm0dgkhd6g77b7aipxam98933k0hzz"; depends=[]; }; + ExtrPatt = derive2 { name="ExtrPatt"; version="0.1-4"; sha256="0azmr5j1icac4apc4w5s2rx1ngzr634hm9n2gjyb6xx2ikwc7sy8"; depends=[doParallel foreach MASS Matrix]; }; ExtractTrainData = derive2 { name="ExtractTrainData"; version="9.1.6"; sha256="146jvjmdf4kw3d3dp2v6fb421kh8jggyg0lh4xg1ggjb4rphpjzd"; depends=[raster]; }; ExtremalDep = derive2 { name="ExtremalDep"; version="0.0.4-1"; sha256="141pf0yvcfds2a0lzcmw99rzb1v75bsgapxppjcdnr66fb0bsqh1"; depends=[copula doParallel evd fda foreach gtools mvtnorm nloptr numDeriv quadprog sn]; }; ExtremeBounds = derive2 { name="ExtremeBounds"; version="0.1.7"; sha256="02s714rg1s7wj9ic2kblc72ww7zpgy1brcqxa4rl96ip2rblzdbv"; depends=[Formula]; }; @@ -1611,9 +1642,10 @@ in with self; { FAMT = derive2 { name="FAMT"; version="2.6"; sha256="0msb02fz8blm6wgg31xwwxv8phg35w7844q1xz4v307ixz2qgs1h"; depends=[impute mnormt]; }; FAMetA = derive2 { name="FAMetA"; version="0.1.5"; sha256="0s963nk5igwv14mnw8pp0snaiygq3xrx1irfzb2r4pgs04sn38an"; depends=[accucor gplots gtools knitr LipidMS minpack_lm plyr rmarkdown scales tidyr]; }; FAMoS = derive2 { name="FAMoS"; version="0.3.0"; sha256="14gr9wv9bpibk0rrzzwijvdncx1fgnpbv55nqzbb4jhq7fdckmsa"; depends=[future R_utils]; }; - FAO56 = derive2 { name="FAO56"; version="0.1.0"; sha256="0dl56gdsmx3ixxakz2xqrirss5xxbz62mvp7jdrgaizrn8xd802i"; depends=[]; }; + FAO56 = derive2 { name="FAO56"; version="1.0"; sha256="0qckfkka487sdvynjk1pl49scqykg7a2hrcyp00xzyl7x9nvim15"; depends=[]; }; FAOSTAT = derive2 { name="FAOSTAT"; version="2.3.0"; sha256="05nwskl8l68rrf0krfmw2sc3snpygqsgdi40kbfim9wfqyy175di"; depends=[classInt data_table httr labeling MASS plyr RJSONIO]; }; FARDEEP = derive2 { name="FARDEEP"; version="1.0.1"; sha256="0blvjakcpkh9vpxryk7qyaqnija0r375ckv37kjlr34xg8pg9qnm"; depends=[nnls preprocessCore]; }; + FAST_R = derive2 { name="FAST.R"; version="0.1.2"; sha256="1nxvpq55nk9r7mf2dxpqzd6vhk2213dxrlgz2qsyrx4pd928mfg1"; depends=[dplyr DT ggplot2 magrittr plater RColorBrewer readxl scales shiny shinyFeedback shinyjs stringr tibble tidyr waiter zip]; }; FASeg = derive2 { name="FASeg"; version="0.1.9"; sha256="0lazx8dyycyycr8467m9rkxkxhp4r2w737kpkb40y59wncmbvkik"; depends=[]; }; FAVAR = derive2 { name="FAVAR"; version="0.1.3"; sha256="0nnljqhrji7c317rlrmx8xscyp6bx2s9zddjsq48c6x45mmsqpfx"; depends=[bvartools coda doParallel dplyr foreach ggplot2 magrittr Matrix MCMCpack]; }; FAdist = derive2 { name="FAdist"; version="2.4"; sha256="166w9i8fgklx12jiq4n7l081znmdi6yvazhlxny4rgqif0z2kr9q"; depends=[]; }; @@ -1621,14 +1653,16 @@ in with self; { FAwR = derive2 { name="FAwR"; version="1.1.2"; sha256="1x90wvp0w7fhid7i5160b4fiv4xn5mpvy33zjzy0mvqvp0yp8xf0"; depends=[glpkAPI lattice MASS]; }; FBCRM = derive2 { name="FBCRM"; version="1.1"; sha256="0smv6snyyxwnac9d7rygsylplpv1sgbg9anya0rsdzv7jl84v7q3"; depends=[Rcpp RcppArmadillo]; }; FBFsearch = derive2 { name="FBFsearch"; version="1.2"; sha256="0rn8pzgk28mjwdrg6x6f46576479a7bwnf9xdij0hfxsfg7wnwf1"; depends=[Rcpp RcppArmadillo]; }; + FBMS = derive2 { name="FBMS"; version="1.0"; sha256="01zj6alrqis2kclghr4zyz04vgfip3fxxb54f26aczmjhpg71vyd"; depends=[fastglm GenSA Rcpp]; }; FBN = derive2 { name="FBN"; version="1.5.2"; sha256="15pib81p2jnxg5sasn4c3s6b1jab16fxr3l4xmlxrk5nk7spmwav"; depends=[]; }; FCMapper = derive2 { name="FCMapper"; version="1.1"; sha256="1yjh8rs65nqslvwv7x4rif469zds41s7v3vhq6pca1y17kvj2in1"; depends=[igraph]; }; FCO = derive2 { name="FCO"; version="0.8.0"; sha256="1zysqchq59v9ykp012sp870wgmckbq8gq3pqhl0jyh903hxw59qv"; depends=[checkmate data_table lavaan semTools]; }; FCPS = derive2 { name="FCPS"; version="1.3.4"; sha256="15xsqwnn5liqjbwg8qpj7prqdiykfxczdw9fyllya7x801ky1rfi"; depends=[DataVisualizations ggplot2 mclust]; }; FCSlib = derive2 { name="FCSlib"; version="1.3.0"; sha256="1191ba6dwpakcdnbcq61zm5xq24isxjnn98nmvk67fpf1ycw70w9"; depends=[bitops fields stringr tiff]; }; FCVAR = derive2 { name="FCVAR"; version="0.1.4"; sha256="0762pkjh0yk96jlpqw4jv0andr0s0ylx14rh1igv9d0nagd237ba"; depends=[fracdist pracma]; }; - FD = derive2 { name="FD"; version="1.0-12.1"; sha256="18i0wcmi2nslifi395ajkkfy3j6dsdbrj4nl5ni6ndnmxifg7d0f"; depends=[ade4 ape geometry vegan]; }; + FD = derive2 { name="FD"; version="1.0-12.3"; sha256="1vky4dmiw3bm2s8zfbywbdmmalyp3ch0i64b6g6600jikvwr2c3f"; depends=[ade4 ape geometry vegan]; }; FDRestimation = derive2 { name="FDRestimation"; version="1.0.1"; sha256="083w50g8n03l0wigywm90xyp8xjxbsbbicv0a5g2wmbdd70m4nay"; depends=[Rdpack]; }; + FDRsamplesize2 = derive2 { name="FDRsamplesize2"; version="0.1.0"; sha256="1rh7ni0ylzr2cyls7i4d39csqdlc9yljv7z49y5n7yg1v4gxxyr2"; depends=[]; }; FDRsampsize = derive2 { name="FDRsampsize"; version="1.0"; sha256="0g8kawzyi9x5yndvh330wzqw6rvcnprwq56ngd0j6z51hvvw8qhw"; depends=[]; }; FDX = derive2 { name="FDX"; version="1.0.6"; sha256="16d2gwdiqv3i37ad33mvad8hsni0i7zf3y85z9sgxvabhs5igva1"; depends=[DiscreteFDR PoissonBinomial pracma Rcpp]; }; FDboost = derive2 { name="FDboost"; version="1.1-2"; sha256="0fmcwjrcj4axdajavlyg7d200yb6wkxkd7fidmcsxpvpnbbb7wgj"; depends=[gamboostLSS MASS Matrix mboost mgcv stabs zoo]; }; @@ -1643,10 +1677,10 @@ in with self; { FGLMtrunc = derive2 { name="FGLMtrunc"; version="0.1.0"; sha256="15pj2dmgbjbx4xi585rqggnp05xzpg9pn2iy76ibgkdvjqknkwii"; depends=[foreach glmnet Rcpp RcppArmadillo splines2]; }; FGalgorithm = derive2 { name="FGalgorithm"; version="1.0"; sha256="1dq6yyb3l6c9fzvk9gs6pb240xb5hvc6fh8p3qd3c91b3m289mcc"; depends=[]; }; FHDI = derive2 { name="FHDI"; version="1.4.1"; sha256="1n1rbrqdphp0prmkili6rnpxwdb7fgwsgncllr6yxlrkr5rb76pm"; depends=[]; }; - FHtest = derive2 { name="FHtest"; version="1.5"; sha256="00mql2r4f5hxhdqf27q3x9s5rz2zzakx2myym97b1w1s7c5znl4q"; depends=[interval KMsurv MASS perm survival]; }; + FHtest = derive2 { name="FHtest"; version="1.5.1"; sha256="0x7lr88w0b09ng7nps490kgj8aqdjzmp9skv9iwqgn871pnpydms"; depends=[interval KMsurv MASS perm survival]; }; FI = derive2 { name="FI"; version="1.0"; sha256="17qzl8qvxklpqrzsmvw4wq3lyqz3zkidr7ihxc4vdzmmz69pyh2f"; depends=[]; }; - FIESTA = derive2 { name="FIESTA"; version="3.5.4"; sha256="1bq292msy0wssc0rysm0w9lw86b70sa3gzya68qb6ik5g0zs8sqh"; depends=[data_table DBI FIESTAutils gdalraster RSQLite sf sqldf]; }; - FIESTAutils = derive2 { name="FIESTAutils"; version="1.1.8"; sha256="0md6wm3v6hmcq7difysxvf7l7rka0l7n3c6daqimkmvr03ncxahg"; depends=[data_table DBI gdalraster hbsae JoSAE mase nlme RColorBrewer Rcpp RPostgreSQL RSQLite sae sf sqldf terra units]; }; + FIESTA = derive2 { name="FIESTA"; version="3.6.0"; sha256="0k6qa64zq4v99jqrg6paqprkcdyacihqgvjba4df0nvi0707lfdl"; depends=[data_table DBI FIESTAutils gdalraster RSQLite sf sqldf]; }; + FIESTAutils = derive2 { name="FIESTAutils"; version="1.2.0"; sha256="1c1pwabvgn4h7gmk1m4vslbaqp7qklvandy285947k911hixrdlq"; depends=[data_table DBI gdalraster hbsae JoSAE mase nlme RColorBrewer Rcpp RPostgreSQL RSQLite sae sf sqldf terra units]; }; FILEST = derive2 { name="FILEST"; version="1.1.2"; sha256="0x95in9yad93j8kbxjykz04x756i1c1cq854c220cc0l3rm3npnl"; depends=[KRIS rARPACK]; }; FIT = derive2 { name="FIT"; version="0.0.6"; sha256="1nkjms9cvigc9sjha1krzhd3nmwsfh8pi0f1plf5k8zpb773zzb2"; depends=[gglasso MASS Rcpp RcppEigen XML]; }; FITSio = derive2 { name="FITSio"; version="2.1-6"; sha256="1qch6z9r8h95jijjdwsi81majgacl42ryzlkn0m1wifkly9mjjrb"; depends=[]; }; @@ -1681,10 +1715,10 @@ in with self; { FRCC = derive2 { name="FRCC"; version="1.1.0"; sha256="18i2lrx2qkwj8j1c3q2vx901hx1f68bnjyrzyhkfmnswyy358368"; depends=[calibrate CCP corpcor MASS]; }; FREEtree = derive2 { name="FREEtree"; version="0.1.0"; sha256="1i2liqbcg993snj5vq341mmafzhn1yrwljvx4f3kyzy0pa59k6rn"; depends=[glmertree MASS pre WGCNA]; }; FREQ = derive2 { name="FREQ"; version="1.0"; sha256="01nra30pbnqdd63pa87lcws3hnhhzybcjvx2jqyxjghn6khz47j0"; depends=[]; }; - FRESA_CAD = derive2 { name="FRESA.CAD"; version="3.4.6"; sha256="17bx8r6a2d74y83zya347hag035ypdmphz710xwq2islgzlvlv9l"; depends=[Hmisc miscTools pROC Rcpp RcppArmadillo stringr]; }; + FRESA_CAD = derive2 { name="FRESA.CAD"; version="3.4.7"; sha256="1lczys1pcs15w8bz3i6kxglfhi4gih5ayrs51kg7d3c4la4di57a"; depends=[Hmisc miscTools pROC Rcpp RcppArmadillo stringr]; }; FRESHD = derive2 { name="FRESHD"; version="1.0"; sha256="0lpggf59dd3kwp2y9p4acvhdmc6i47bwa5lk6d6cp8q0g7sr44rm"; depends=[glamlasso Rcpp RcppArmadillo RcppEigen]; }; FRI = derive2 { name="FRI"; version="1.0"; sha256="17ddbr0hndpr5627n67467787rq8hidi1jn1c3xf7f7qz800jjf5"; depends=[forcats ggplot2 neuralnet RSNNS]; }; - FRK = derive2 { name="FRK"; version="2.2.0"; sha256="1jwsmrc4hqask0bls4rd8bssgddpy17l615w6p19iiayd3xlir55"; depends=[digest dplyr ggplot2 ggpubr Hmisc Matrix plyr Rcpp RcppEigen reshape2 scales sp spacetime sparseinv statmod TMB]; }; + FRK = derive2 { name="FRK"; version="2.2.1"; sha256="0nh8lfx361n992ha203qc306wsjc6gk8y2323lvdf4wi4gb42csv"; depends=[digest dplyr ggplot2 ggpubr Hmisc Matrix plyr Rcpp RcppEigen reshape2 scales sp spacetime sparseinv statmod TMB]; }; FSA = derive2 { name="FSA"; version="0.9.5"; sha256="0b9gf1sh7igd6i14cgl6j8ns2zqvpph3830n7b4q9vw4dfcb53g0"; depends=[car dunn_test lmtest plotrix withr]; }; FSAdata = derive2 { name="FSAdata"; version="0.4.1"; sha256="0zh0gkylziysqjc9gn3kjz7070x2rvmi1c64kxl6q2479929hysi"; depends=[]; }; FSAtools = derive2 { name="FSAtools"; version="2.0.5"; sha256="0i4grcr155vbsnw823jiwngyayzymka9k7zhsbw1f208q6xyrx4d"; depends=[]; }; @@ -1701,12 +1735,11 @@ in with self; { FUNTA = derive2 { name="FUNTA"; version="0.1.0"; sha256="02yxz95s2hs26mfmgwhv5d54yyjz0aczjpnay8b4gpzbpd6aci61"; depends=[]; }; FWDselect = derive2 { name="FWDselect"; version="2.1.0"; sha256="0w0hkmhcz7h1lixk7p3yffbbalgxwh2lv463vqz361k80sri6wz7"; depends=[cvTools mgcv]; }; FWRGB = derive2 { name="FWRGB"; version="0.1.0"; sha256="0wi1vkb8mmw9f8hzgp8cm6hy9nbglz0x8mllngdamhlvm35gr57d"; depends=[e1071 imager neuralnet]; }; - FactoClass = derive2 { name="FactoClass"; version="1.2.8"; sha256="0w20nrhaky2lj9z2if59fppim5063962xv2yl76g28xqgc6rmymq"; depends=[ade4 ggplot2 ggrepel KernSmooth scatterplot3d xtable]; }; - FactoInvestigate = derive2 { name="FactoInvestigate"; version="1.8"; sha256="1m2005yywdh9ir61sdh10ssp1y26d9xgx9rivvilbk9grc9qyjzg"; depends=[FactoMineR ggplot2 rmarkdown]; }; + FactoInvestigate = derive2 { name="FactoInvestigate"; version="1.9"; sha256="0kzm57hd2j43kp84x2saz1nj575dw14sx3l9pmqqkr6871jrgjlw"; depends=[FactoMineR ggplot2 rmarkdown]; }; FactoMineR = derive2 { name="FactoMineR"; version="2.9"; sha256="0c2j3xid85qffsdjwndqiwihclzw6k1nkbpzcc7whhd6k79rh9l8"; depends=[car cluster DT ellipse emmeans flashClust ggplot2 ggrepel lattice leaps MASS multcompView scatterplot3d]; }; FactorAssumptions = derive2 { name="FactorAssumptions"; version="2.0.1"; sha256="0d7dh67r8s0v952palhx9h6bhhlxw9xcjbj7dxsp2hdhwap72s2y"; depends=[MASS psych]; }; FactorCopula = derive2 { name="FactorCopula"; version="0.9.3"; sha256="1lvqa62v9rvz7pmrx06riqndh4jyw60an04hpg6if523jsxpa5nz"; depends=[abind igraph matlab polycor statmod VineCopula]; }; - Factoshiny = derive2 { name="Factoshiny"; version="2.4"; sha256="0szdpdghaqrfjdx3c9klgww8i09dh69500sls2lyjz6c8gi80vcx"; depends=[colourpicker DT FactoInvestigate FactoMineR ggplot2 ggrepel missMDA shiny shinydashboard shinyjqui]; }; + Factoshiny = derive2 { name="Factoshiny"; version="2.5"; sha256="1am0lycldx1j75c5lm6hp84845fvcwvrvjbkqs2mf17a3i72ir48"; depends=[colourpicker DT FactoInvestigate FactoMineR ggplot2 ggrepel missMDA shiny shinydashboard shinyjqui]; }; Fahrmeir = derive2 { name="Fahrmeir"; version="2016.5.31"; sha256="16fbc1zb9x9p04bl7y5nd375pha6bd3hfqqchlk1bqxrj4879y5g"; depends=[]; }; FairMclus = derive2 { name="FairMclus"; version="2.2.1"; sha256="0mhccn6yyf35qb856psh3dpiwdf24l3w2lqr643lkn38lhbmyvn8"; depends=[cluster data_table doParallel dplyr foreach irr magrittr rlist tidyr]; }; FamEvent = derive2 { name="FamEvent"; version="3.0"; sha256="1f2cfbd799gkva0jyf7x6x37x95nlg1zv85h85irkwh0kfwk55gh"; depends=[cmprsk eha kinship2 MASS pracma survival truncnorm]; }; @@ -1719,12 +1752,12 @@ in with self; { FastGP = derive2 { name="FastGP"; version="1.2"; sha256="120qai1yw3yhwm762zridk78n4qclpivwm9f2hkij4bz851qibqv"; depends=[MASS mvtnorm rbenchmark Rcpp RcppEigen]; }; FastGaSP = derive2 { name="FastGaSP"; version="0.5.2"; sha256="1i54gxnc27fjgdbcrf2n1s5p6jgadcz2v4g0hq4xay0kfr593a7g"; depends=[Rcpp RcppEigen RobustGaSP]; }; FastImputation = derive2 { name="FastImputation"; version="2.2.1"; sha256="0jnhspgxas7kswpgw4hihc1y1286w5n8bikwzls7vsik5lj5yac4"; depends=[Matrix]; }; - FastJM = derive2 { name="FastJM"; version="1.4.0"; sha256="0k53hlwz00qp4242dy8wrk0xhq89dlrzh5a340aw2j134qrh42lk"; depends=[caret dplyr MASS nlme Rcpp RcppEigen statmod survival timeROC]; }; + FastJM = derive2 { name="FastJM"; version="1.4.1"; sha256="0ckk8705d37mbym09nl2vckkgg9zc9x7izaw7zhh0dcb7fyqxr3w"; depends=[caret dplyr MASS nlme Rcpp RcppEigen statmod survival timeROC]; }; FastKM = derive2 { name="FastKM"; version="1.1"; sha256="0kkrfb98h843yh4n8mvz3y2sp9qkykpabg9w927jb8i230aiy1sq"; depends=[rARPACK]; }; FastKNN = derive2 { name="FastKNN"; version="0.0.1"; sha256="1iz8ybzkvbyqwb00s7cp1zvy9xlmyjid441mf62dq08a0zncnyss"; depends=[assertthat pdist]; }; FastPCS = derive2 { name="FastPCS"; version="0.1.3"; sha256="152fy5hq675n1mjdsi31a77rmi3vylvvbfgywrh62chy5xa1bf34"; depends=[matrixStats Rcpp RcppEigen]; }; FastRCS = derive2 { name="FastRCS"; version="0.0.8"; sha256="11kqd8aii9sy65m5inxiqggyajb41iy6w92zp5wggx7pbg9m6lmy"; depends=[matrixStats Rcpp RcppEigen]; }; - FastRWeb = derive2 { name="FastRWeb"; version="1.2-0"; sha256="13w09ic38vzdyyhcdd18as443nbhgbw4baydrlbl7nai0llsk9w9"; depends=[base64enc Cairo]; }; + FastRWeb = derive2 { name="FastRWeb"; version="1.2-1"; sha256="1kpj38b08xd2zyas1ac5jj1vfyb2b5q2kai55h5plcjlz3h627lp"; depends=[base64enc Cairo]; }; FastSF = derive2 { name="FastSF"; version="0.1.1"; sha256="1xajav45h57hchzkvl2pb4mz9xy433lq74jnry0icid8dai5xhwb"; depends=[limSolve Rcpp RcppArmadillo]; }; FastStepGraph = derive2 { name="FastStepGraph"; version="0.1.1"; sha256="0f05cyhdz1530vhwv6r76lpcj7lqq5xrvhmpjfv716v0c4j2i72s"; depends=[doParallel foreach MASS]; }; FatTailsR = derive2 { name="FatTailsR"; version="1.8-0"; sha256="10js4vbg9f4ql2panzwb5vxzzb8qb2hl6xyx7nhindhwncga8q33"; depends=[minpack_lm timeSeries]; }; @@ -1742,13 +1775,13 @@ in with self; { FiRE = derive2 { name="FiRE"; version="1.0.1"; sha256="08xs4w7d3w4zrymq0sjpz34hmsd4lsd5989r660qdpg3ybpqx8lj"; depends=[BH Rcpp]; }; FiSh = derive2 { name="FiSh"; version="1.1"; sha256="1fcs2y3diszypv7sr4vl75wizcxv0na0pqflmlrizs2w7kyw51p6"; depends=[fda_usc KernSmooth]; }; FielDHub = derive2 { name="FielDHub"; version="1.3.4"; sha256="08s9snwcvnhrhcqm4csl2pnsp3vxa5vmckmkjhhs4ima51d13f0y"; depends=[blocksdesign config desplot dplyr DT ggplot2 golem htmltools magrittr numbers plotly shiny shinyalert shinycssloaders shinyjqui shinyjs shinythemes turner viridis]; }; - FieldSimR = derive2 { name="FieldSimR"; version="1.1.0"; sha256="10cnyig18gs97mmnl0bj1i5j2fdazynfr25c5cia9prcl01a9q0f"; depends=[ggplot2 interp lattice matrixcalc mbend]; }; + FieldSimR = derive2 { name="FieldSimR"; version="1.2.0"; sha256="1nqdbm93cicvfr757bg5r226swbsy6abg52z7n3jysrkqlicf278"; depends=[ggplot2 interp lattice matrixcalc mbend]; }; FinAna = derive2 { name="FinAna"; version="0.1.2"; sha256="09svg5z52vv90ih85awgh6ns3pqi789qjm2wi1gb9hbg9v5g7pdv"; depends=[]; }; FinAsym = derive2 { name="FinAsym"; version="1.0"; sha256="0v15ydz4sq9djwcdcfp90mk8l951rry7h91d7asgg53mddbxjj6f"; depends=[]; }; FinCal = derive2 { name="FinCal"; version="0.6.3"; sha256="1clvnvhpf2krrf8flhmdxmys6ym3xw3v4v07kk1if4xb0dfk9wgy"; depends=[ggplot2 RCurl reshape2]; }; FinCovRegularization = derive2 { name="FinCovRegularization"; version="1.1.0"; sha256="0h3i46s0rpqvgnqgjwqrlrfa3vv5jn2hm6bqc0ijwmrr9f80g4ir"; depends=[quadprog]; }; FinNet = derive2 { name="FinNet"; version="0.1.2"; sha256="1pfzdxprjh7nz2p7gvlss9hbkxb50l9v9z37hmf6xx4983a62z9z"; depends=[Matrix]; }; - FinTS = derive2 { name="FinTS"; version="0.4-6"; sha256="1lj1lzyglfphgas17j9isd7ama05m3qr0mkfisyh2w1srgqxi32r"; depends=[zoo]; }; + FinTS = derive2 { name="FinTS"; version="0.4-8"; sha256="0wa1jn1qjqsajahkf1ildajzcmwr8rwgnr0v34qvc86nkyhdd8sp"; depends=[zoo]; }; FinancialInstrument = derive2 { name="FinancialInstrument"; version="1.3.1"; sha256="0f1zaclrcmpkdhcfc8a09f7lsf2b7gfyd7js3173qckn84a01f3w"; depends=[quantmod TTR xts zoo]; }; FinancialMath = derive2 { name="FinancialMath"; version="0.1.1"; sha256="11nhphvd7bvbc7xfs85rib763r1mpvxmsj6hgzfib5aifib5k5js"; depends=[]; }; FindIt = derive2 { name="FindIt"; version="1.2.0"; sha256="0zrvkvj907fw86jnzzlwk4d90hi42nq45jprp16xryxb7xxii6i8"; depends=[arm glinternet glmnet igraph lars limSolve lmtest Matrix quadprog sandwich]; }; @@ -1762,12 +1795,13 @@ in with self; { FitUltD = derive2 { name="FitUltD"; version="3.1.0"; sha256="17fj211riybq71k63wjfv2ndc2h46ay5svrac2v5i3b92cb9hkbv"; depends=[ADGofTest assertthat cowplot fitdistrplus ggplot2 MASS mclust purrr]; }; FixSeqMTP = derive2 { name="FixSeqMTP"; version="0.1.2"; sha256="0v1cwq8gapgandm7wiw8p6av6qigydlpmwi6w02p1y7f0hf5ifnp"; depends=[]; }; FixedPoint = derive2 { name="FixedPoint"; version="0.6.3"; sha256="04f3x2akphfm6d84vbf9nfrn281d5hbbnb57n4cwy9hgrs835h6w"; depends=[MASS]; }; + FjordLight = derive2 { name="FjordLight"; version="0.7.0"; sha256="1pswqpglddjdlhrzd4a3mcf3skd65wjjds3a6dinjnj397iqwsaw"; depends=[curl ncdf4 raster]; }; FlexDir = derive2 { name="FlexDir"; version="1.0"; sha256="1gb5alv9jsnw0135g63cy757pxhdw6cgwfm8dpcm8dj9zqg10dkm"; depends=[]; }; - FlexDotPlot = derive2 { name="FlexDotPlot"; version="0.2.2"; sha256="0526cnbq4a34k96b99x8i1pcdn1a70fvc9lagq7yd7bsq6fv2gvs"; depends=[bsplus colourpicker dendextend DT FactoMineR ggdendro ggforce ggplot2 gridExtra grImport2 htmltools magrittr reshape2 scales shiny shinydashboard shinyWidgets sisal]; }; FlexGAM = derive2 { name="FlexGAM"; version="0.7.2"; sha256="04xbglg9vli18fd24k1qyvbl7svp70k67ig3jiss96fgkgbi6w7c"; depends=[MASS Matrix mgcv scam]; }; - FlexParamCurve = derive2 { name="FlexParamCurve"; version="1.5-5"; sha256="1404cn3bhcdr3mjhpr072zcyl0wnksarsg2sry5d1scsmrn4xq83"; depends=[nlme]; }; + FlexParamCurve = derive2 { name="FlexParamCurve"; version="1.5-6"; sha256="0p0c949cdb05r6xnjc7k1i47z809g4mda1l94q7f4dikpnl1h2zd"; depends=[nlme]; }; FlexReg = derive2 { name="FlexReg"; version="1.3.0"; sha256="15vl2wfvplydjgdgcb4gla02n6hx9lljnw20r5rvhw4ll6ahr110"; depends=[bayesplot BH Formula ggplot2 loo Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; FlexScan = derive2 { name="FlexScan"; version="0.2.2"; sha256="1887r2nxpv89rizzj0j1p5shfmbyhchjzaszbxd7mlswqkqazb53"; depends=[smerc sp spatialreg spdep]; }; + FlexVarJM = derive2 { name="FlexVarJM"; version="0.1.0"; sha256="1gq832bhwjs59blhblj5l3c92sa6mid57r5dkk4lv2pfdbagfj5a"; depends=[ggplot2 lcmm marqLevAlg mvtnorm randtoolbox Rcpp RcppArmadillo survival survminer]; }; FlickrAPI = derive2 { name="FlickrAPI"; version="0.1.0.1"; sha256="17am293wrrigpdl891nmrqwvxjvb38whmls45syk6sm1msm1ph7l"; depends=[httr2 janitor magrittr rlang]; }; FloodFreqPlot = derive2 { name="FloodFreqPlot"; version="0.1.0"; sha256="19jg0i4fd7x401gwfkirp8mi3i4kzqxk0nla6wvfcsbmy5qsf15q"; depends=[]; }; FlowRegEnvCost = derive2 { name="FlowRegEnvCost"; version="0.1.1"; sha256="0lw4kv4z0s23jy11y53rxxh7zxa7vajxrcnjgxd74xxs64vjlj88"; depends=[zoo]; }; @@ -1789,7 +1823,7 @@ in with self; { FormShare = derive2 { name="FormShare"; version="1.0.1"; sha256="17wdqjymc33r7r17h3fwi0ixlbpl77k1fm9a6r3gjwxixz8kicx3"; depends=[httr jsonlite R6]; }; Formula = derive2 { name="Formula"; version="1.2-5"; sha256="0p1m9pqcn8ns0sn67js53677q8gwxgbl4bymcn5y2r0dc1s4c9c6"; depends=[]; }; FossilSim = derive2 { name="FossilSim"; version="2.3.2"; sha256="0wirvjs6gvmgwxwixf1fld7xzq5hyyzfh3fhpglpah8hm744b6hf"; depends=[ape]; }; - FossilSimShiny = derive2 { name="FossilSimShiny"; version="1.0.0"; sha256="0dvf0rszlj1bs0qyi2fy80709wq7qhk50fcgr79265p5w8sq4kfs"; depends=[FossilSim shiny]; }; + FossilSimShiny = derive2 { name="FossilSimShiny"; version="1.1.1"; sha256="05prhgzq1fqh21wp6k1saqm1cwapbs1b7ikn8jj2f7yjwry4nl31"; depends=[FossilSim shiny]; }; FourScores = derive2 { name="FourScores"; version="1.5.1"; sha256="1la9d1hfcmi0zg58yl0a7nj36giagh0fwrc7wxyqdq0c7zf1hfzq"; depends=[]; }; FourWayHMM = derive2 { name="FourWayHMM"; version="1.0.0"; sha256="0zi42d214dq70ypgj8g57fwjbqfih4z0956njpj2739aqsnjq5v4"; depends=[data_table doSNOW foreach LaplacesDemon mclust snow tensor tidyr withr]; }; FourgameteP = derive2 { name="FourgameteP"; version="0.1.0"; sha256="15yn47737768fkjjv8ykc9lw7x58pq44k90d9d4c9hp20zw5f3by"; depends=[]; }; @@ -1819,10 +1853,10 @@ in with self; { FuzzyM = derive2 { name="FuzzyM"; version="0.1.0"; sha256="12arx4flgykdkynnj341pgpd85k7xh6491bv9v9da63w6rp0kdm6"; depends=[]; }; FuzzyNumbers = derive2 { name="FuzzyNumbers"; version="0.4-7"; sha256="12xficdsln31rzfziycw6z0912cgrq6mkvz3f1nbli9lzqrypxzl"; depends=[]; }; FuzzyNumbers_Ext_2 = derive2 { name="FuzzyNumbers.Ext.2"; version="3.2"; sha256="0gldq0bg1p1vmrn35prha44d7lyymz0jzshdyp2c5rx433mny7h5"; depends=[FuzzyNumbers]; }; - FuzzyPovertyR = derive2 { name="FuzzyPovertyR"; version="1.0.0"; sha256="1fhgvjy83806l74bn2i8d1lslgbb38phhjfql65s98jbbckh98qp"; depends=[dplyr ecp reshape2]; }; + FuzzyPovertyR = derive2 { name="FuzzyPovertyR"; version="1.1.0"; sha256="0cs11xqnayvpqhy4srdmj9hl8rwz8360cbzb48mkcjrx8ah6njaw"; depends=[dplyr ecp reshape2]; }; FuzzyQ = derive2 { name="FuzzyQ"; version="0.1.0"; sha256="1camdw7rnzf02nqjlmkr7mqpc38dafq9nw8x7pzwi1lh5xwv5dia"; depends=[cluster]; }; FuzzyR = derive2 { name="FuzzyR"; version="2.3.2"; sha256="0d0zf8diw7m10zfx0r5zg5arhf4a90sva77h6rvfywixldwrnk7s"; depends=[plyr shiny]; }; - FuzzyResampling = derive2 { name="FuzzyResampling"; version="0.6.2"; sha256="0kx3axm46i0jgv2x09qpggaayy5027yya16g8x1jfgrn9ya62357"; depends=[]; }; + FuzzyResampling = derive2 { name="FuzzyResampling"; version="0.6.3"; sha256="1gic7la5ks7v37f3h4azazz4sv650sp6pl199wk4021blkah5r56"; depends=[]; }; FuzzySTs = derive2 { name="FuzzySTs"; version="0.2"; sha256="0zs1pyn9apysspxa0glqc96h6npmvvhiqvqpcm0brslz0b6xnilp"; depends=[FuzzyNumbers polynom]; }; FuzzySimRes = derive2 { name="FuzzySimRes"; version="0.3.0"; sha256="0cwx5zfbbji5jy2hrrj5k6m0p8nr8ljficj5fjrzhjd9cj2smqwy"; depends=[FuzzyNumbers palasso]; }; FuzzyStatProb = derive2 { name="FuzzyStatProb"; version="2.0.4"; sha256="1jpqb8xczi1d4g306vrwpi02f9h59aki1pgnckvfmiclr306prpb"; depends=[DEoptim FuzzyNumbers MultinomialCI]; }; @@ -1830,7 +1864,7 @@ in with self; { FuzzyStatTraEOO = derive2 { name="FuzzyStatTraEOO"; version="1.0"; sha256="0jxjnmsznab0nf6nrjvdcy2gjmzn7fa0va993f7ylasr2pjawgsd"; depends=[R6]; }; G2Sd = derive2 { name="G2Sd"; version="2.1.5"; sha256="165i6x2k56vwhk5p2p5m9vjmp9flblsapjdlz7nw9b719l6xz5zk"; depends=[ggplot2 reshape2 rJava shiny xlsx xlsxjars]; }; GA = derive2 { name="GA"; version="3.2.3"; sha256="0q0br75zklnp0g3j98x6lll5fhyayxqzaqs3hc2z39s2imwi2fpb"; depends=[cli crayon foreach iterators Rcpp RcppArmadillo]; }; - GABB = derive2 { name="GABB"; version="0.3.3"; sha256="18mxfkm2g76r3gp6l2mb6nlkzlr779ql5s14n0iid93226xvwhxp"; depends=[dplyr egg ggforce ggplot2 ggplotify ggpubr ggrepel Hotelling pheatmap RVAideMemoire tidyr vegan]; }; + GABB = derive2 { name="GABB"; version="0.3.7"; sha256="1hwk9653y7xw48vqg69kgkmid8yxmx66rirq66s9khd85pllgbg9"; depends=[dplyr egg ggforce ggplot2 ggplotify ggpubr ggrepel Hotelling pheatmap tidyr vegan]; }; GACFF = derive2 { name="GACFF"; version="1.0"; sha256="0lhjzb6cj8838dh4423929z7bwpa6cv3dn84rccwi3382vsq9g2c"; depends=[]; }; GAD = derive2 { name="GAD"; version="1.1.1"; sha256="0lyrw0d7i7yn1wkqlbf3rg3dnijfwsjn3kdbsg19hmvwq6qpsak2"; depends=[matrixStats R_methodsS3]; }; GADAG = derive2 { name="GADAG"; version="0.99.0"; sha256="1ycg48idrq2yrk1fxs16yl5wwg3kbfki8xppmh311rrzf75c6z4g"; depends=[igraph MASS Rcpp RcppArmadillo]; }; @@ -1851,9 +1885,9 @@ in with self; { GB2group = derive2 { name="GB2group"; version="0.3.0"; sha256="1dbyc7izyggfrsq2gj7rwff5qjyy6bx6ip09xvbj73xqczv8fkcd"; depends=[GB2 ineq minpack_lm numDeriv]; }; GB5mcPred = derive2 { name="GB5mcPred"; version="0.1.0"; sha256="009ijrc0f04n74bxyrqnw553rf299m2gxbqrpkf3hrd78yfd3idy"; depends=[Biostrings caret devtools doParallel e1071 entropy foreach ftrCOOL gbm iterators party randomForest seqinr splitstackshape stringr tibble tidyverse]; }; GBJ = derive2 { name="GBJ"; version="0.5.3"; sha256="12lsddkcxz37hn2fvjq158wb1bc6b3hx6wj8q8nj21zpmyl3n2qh"; depends=[BH mvtnorm Rcpp SKAT]; }; - GCCfactor = derive2 { name="GCCfactor"; version="1.0"; sha256="0ymqzkh1iaiib2lqqx54rckzia56kxphnb1bzbdim5d3m2hhi80y"; depends=[sandwich stringr]; }; + GCCfactor = derive2 { name="GCCfactor"; version="1.0.1"; sha256="1rxn0v4msfr5rwqc91ypafnvwa23n5574s8lhqmdqq53rs32ff89"; depends=[sandwich stringr]; }; GCD = derive2 { name="GCD"; version="4.0.7"; sha256="1259z76hajapzzq75fas2sq19r0wapn1ybghdaqdc6dksifdz6fv"; depends=[raster]; }; - GCPBayes = derive2 { name="GCPBayes"; version="4.0.0"; sha256="1ab0vp948dyj9b6yh5gixlqim2xklhy6gsbgi641knzc30paiwj4"; depends=[gdata invgamma MASS mvtnorm postpack truncnorm wiqid]; }; + GCPBayes = derive2 { name="GCPBayes"; version="4.1.0"; sha256="04z1hip6rbvwdpy6afdz8fzfin8iff1wnja7rycsj7igc8vz3saz"; depends=[gdata invgamma MASS mvtnorm postpack Rcpp RcppArmadillo truncnorm wiqid]; }; GCPM = derive2 { name="GCPM"; version="1.2.2"; sha256="0k2ng78bk3bxpj6nz80j5cvjd56zjz328ga68vyyc3hvdjgpspqj"; depends=[Rcpp RcppProgress]; }; GCSM = derive2 { name="GCSM"; version="0.1.1"; sha256="0apz1wh6nfpg2gyx12xnbdb3hjyrrpwlcrh5khn6cxhxm06q9l95"; depends=[Rcpp RcppArmadillo]; }; GCalcium = derive2 { name="GCalcium"; version="1.0.0"; sha256="0r84qmdsqsgpaqr08imh48mdvy26s2b62hi0hxxwhr9kg7qvj0rd"; depends=[caTools dplyr]; }; @@ -1865,7 +1899,8 @@ in with self; { GDINA = derive2 { name="GDINA"; version="2.9.4"; sha256="10bbwr4q6cp36dnwhddviqg7f00h92gdmvblw0lxn72v4869vhn1"; depends=[alabama ggplot2 MASS nloptr numDeriv Rcpp RcppArmadillo Rsolnp shiny shinydashboard]; }; GDPuc = derive2 { name="GDPuc"; version="0.11.1"; sha256="1y91iivbfwrnjy9wg6dm9v0hd23fgqmry60sw2a2f5n0hflbgafc"; depends=[cli crayon dplyr glue lifecycle magrittr rlang tibble tidyr tidyselect withr]; }; GDSARM = derive2 { name="GDSARM"; version="0.1.1"; sha256="0id3z450prnrd6rdcv4xaizmjkdhjv8vdbpbnpniaml66kqsadvh"; depends=[lpSolve]; }; - GE = derive2 { name="GE"; version="0.3.9"; sha256="1wq7za5wi39qsd5x1986myasf4pz3a5mh0fkzbpbklmcsahadrm5"; depends=[CGE data_tree DiagrammeR]; }; + GE = derive2 { name="GE"; version="0.4.1"; sha256="1jwi3zb33f7f8i8rvy3gr7j5cix76h97mkcgsr5fmblzvwrwwhg5"; depends=[CGE data_tree DiagrammeR]; }; + GEC = derive2 { name="GEC"; version="0.1.0"; sha256="1kcczyih3lg1cc6nppxbpz1zkq9priy8xwapd6kvkzmyw8npback"; depends=[mistr]; }; GEEaSPU = derive2 { name="GEEaSPU"; version="1.0.2"; sha256="02pwjqd94kranc1f69bx9rzk27kchavhvhl9fygjhrr40nwq3pbg"; depends=[gee Rcpp RcppArmadillo]; }; GEEmediate = derive2 { name="GEEmediate"; version="1.1.4"; sha256="1x0r2qcyd9hrhkws5zi0pjdc40w8wal3jpvvajj3cr8c1r8dpfzz"; depends=[gee]; }; GEInfo = derive2 { name="GEInfo"; version="1.0"; sha256="08ha9w3c64x9ib2fbh4djbhg7y6lykibx93mbm7i3gdvpajqk0jx"; depends=[dplyr glmnet MASS pheatmap rvest]; }; @@ -1885,26 +1920,26 @@ in with self; { GFD = derive2 { name="GFD"; version="0.3.3"; sha256="1d40fwk367ww544z25jwlx2kdm1gv7y6ijl8vnpi198n7k1hdgpl"; depends=[magic MASS Matrix plotrix plyr shiny shinyjs shinythemes shinyWidgets tippy]; }; GFDmcv = derive2 { name="GFDmcv"; version="0.1.0"; sha256="094b41sx3czz9sjqhvxggkmrdcwfwv8ww9k4286vzd055jbvk5hh"; depends=[doParallel foreach HSAUR MASS Matrix mvtnorm Rcpp RcppArmadillo stringr]; }; GFDsurv = derive2 { name="GFDsurv"; version="0.1.1"; sha256="0qq66f8ddw92m9k9raid89rggla9691xi2sn1w3r7lmwqf6ajsl4"; depends=[gridExtra magic MASS plyr shiny shinyjs shinythemes survival survminer tippy]; }; - GFE = derive2 { name="GFE"; version="0.1.0"; sha256="0ywrg23z13kp8ggw4wbm4jvr2rvb6kra7ma0mgfj8xzkrxs6vi6m"; depends=[data_table dplyr TeachingSampling]; }; + GFE = derive2 { name="GFE"; version="0.1.1"; sha256="1mhlvp7i8g4b3mj4qwfnk0vl7af9sflgi6zgsjjp16kdsv42zkwn"; depends=[data_table dplyr TeachingSampling]; }; GFGM_copula = derive2 { name="GFGM.copula"; version="1.0.4"; sha256="0cw8ih9dj86cvks0qcpffzjx8lv6qiwvk3f1wri8zashj8lk9am6"; depends=[cmprsk compound_Cox joint_Cox]; }; GFM = derive2 { name="GFM"; version="1.2.1"; sha256="13v8gsn1zsxcji52n3mv1bik5xjqzg8n01rak1bvffm9qwakg571"; depends=[doSNOW irlba MASS Rcpp RcppArmadillo]; }; GFisher = derive2 { name="GFisher"; version="0.2.0"; sha256="0ilvl8y118iicq5anzcsm94yz3bq890mb627dxi6z61cqazjbbai"; depends=[Matrix mvtnorm]; }; GGClassification = derive2 { name="GGClassification"; version="0.1"; sha256="03wis5ng2mnfhp33xrag8xbmvjagzr1909a6x94wv7s2spji00rp"; depends=[Rcpp RcppEigen]; }; GGEBiplots = derive2 { name="GGEBiplots"; version="0.1.3"; sha256="0h7irlmq283bx1hlqyv8bi228kd6xkc7sdw6nq18v3s7b0a9bhcm"; depends=[ggforce ggplot2 scales]; }; - GGIR = derive2 { name="GGIR"; version="3.0-0"; sha256="1c9qkl6sppans204xl4kxr01qzm95kg229h88xa8mwixxicy8wkw"; depends=[data_table doParallel foreach ineq signal unisensR zoo]; }; - GGIRread = derive2 { name="GGIRread"; version="0.3.1"; sha256="1basg24y3p08q6crk67q43pzpsbjmg627knn1sma0y1g17ksn4ga"; depends=[bitops matlab Rcpp]; }; + GGIR = derive2 { name="GGIR"; version="3.0-2"; sha256="049fr8fnl7ad1i52i35bzl1lzqdd2rb67ph1w96gyib1dljhz5pf"; depends=[data_table doParallel foreach ineq irr psych signal unisensR zoo]; }; + GGIRread = derive2 { name="GGIRread"; version="0.3.2"; sha256="0ml24m0lnh0v4fykzni4q1xhyzfjyyrnancwf9nikywcxbi358fn"; depends=[bitops matlab Rcpp]; }; GGMncv = derive2 { name="GGMncv"; version="2.1.1"; sha256="0lih9dyb5aqrawhiy2vhv63b132hhzq6zq0x6rbrhy8kbkldhigr"; depends=[GGally ggplot2 glassoFast MASS mathjaxr network numDeriv pbapply Rcpp RcppArmadillo Rdpack reshape sna]; }; GGMnonreg = derive2 { name="GGMnonreg"; version="1.0.0"; sha256="1bhqk172ddc7xq1hqj1i6q8np6jvmf2xypvd8kp3w1bcsafsbms8"; depends=[bestglm corpcor doParallel foreach GGally GGMncv ggplot2 MASS Matrix network poibin psych Rdpack sna]; }; - GGMridge = derive2 { name="GGMridge"; version="1.3"; sha256="0aaah07n4nq2acvwikgwdqymchf7b1l9nkifwl7wxnr88pazcb4y"; depends=[MASS mvtnorm]; }; + GGMridge = derive2 { name="GGMridge"; version="1.4"; sha256="179g82w7vrbkvq0b8bcaakcjhqz1gsyc2qyh70ldglbj0sj5yh4m"; depends=[MASS mvtnorm]; }; GGMselect = derive2 { name="GGMselect"; version="0.1-12.7"; sha256="1l90viinjfbjwl7229aqbzv72d0jgjbcidv0ll770qsd1hc1p70r"; depends=[gtools lars mvtnorm]; }; GGRidge = derive2 { name="GGRidge"; version="1.1.0"; sha256="08gj61ahk7ilvsz93xcdv7yknkmfz2spbym6c2c62gq8cva9zg86"; depends=[CVglasso gRbase MASS]; }; GGUM = derive2 { name="GGUM"; version="0.5"; sha256="1xbbapam5whnsa0f2fpvj2v56c7g5wm4jcs0xwzrcjlp9g293vqj"; depends=[abind psych Rdpack viridis xlsx]; }; - GGally = derive2 { name="GGally"; version="2.1.2"; sha256="1r98zgh2grn8330cf26r1c20gl131zm778szvn5wj6q6pwv2yd9h"; depends=[dplyr forcats ggplot2 gtable lifecycle plyr progress RColorBrewer reshape rlang scales tidyr]; }; + GGally = derive2 { name="GGally"; version="2.2.0"; sha256="1pc0mcxhj3mz8ac6r1sqfxw1wkamikjal54z7pb1mairsr3hpqnw"; depends=[dplyr ggplot2 ggstats gtable lifecycle magrittr plyr progress RColorBrewer rlang scales tidyr]; }; GGoutlieR = derive2 { name="GGoutlieR"; version="1.0.2"; sha256="18ass4fxdsvcn9j103dixar0grrh5w3nh6icydh1w5myrd455z9l"; depends=[cowplot doParallel FastKNN foreach ggforce ggplot2 RColorBrewer rlang rnaturalearth scales sf tidyr]; }; GHS = derive2 { name="GHS"; version="0.1"; sha256="1khjfy62a67r59s2rax9mmnqy5xnnwhbydzhqwwmyspl48mxycdj"; depends=[MASS]; }; GHap = derive2 { name="GHap"; version="3.0.0"; sha256="1fyxgnn6b474rx8cqg9lgdybq5j4nriq2axwgmhx7m8f7mysrqny"; depends=[class data_table e1071 Matrix pedigreemm sparseinv stringi]; }; GIC = derive2 { name="GIC"; version="1.0.0"; sha256="0wjrv5rpzcyng0vvpr59l148lxzqnqq4c045fw2x9ynffyb71h99"; depends=[cluster ggplot2 randomForest]; }; - GIFT = derive2 { name="GIFT"; version="1.2.0"; sha256="1279pqfkxsmaqhsfkm0hmi5f408iapmckaa47616x28h58pc6rbh"; depends=[ape curl dplyr httr2 jsonlite phytools purrr sf tidyr]; }; + GIFT = derive2 { name="GIFT"; version="1.3.1"; sha256="0fwqf6xxb3nk3rfirkw4a4525xm7n5k4cjr90904zwr8mmnwpfj2"; depends=[ape curl dplyr httr2 jsonlite phytools purrr sf tidyr]; }; GIFTr = derive2 { name="GIFTr"; version="0.1.0"; sha256="101vr2qasky8hnxp5i3lhlnymwzciypqwvhpl6mrr0r0czgpcz2f"; depends=[glue stringr]; }; GIGrvg = derive2 { name="GIGrvg"; version="0.8"; sha256="09n0nhsv3v61asfzghzxa9sr3ryl25mlvj73gk9ql9wlrynd3wrl"; depends=[]; }; GISSB = derive2 { name="GISSB"; version="1.1"; sha256="0clhch4xvklrmk7h6b7vz83zzlj5r1lzrszy73agmpdbs5cax5sy"; depends=[cppRouting dplyr here httr igraph leaflet magrittr nabor purrr RCurl reshape2 rlang sf stringr tibble tidygraph tidyselect]; }; @@ -1912,7 +1947,7 @@ in with self; { GIplot = derive2 { name="GIplot"; version="0.1.0"; sha256="1asyd4f76xg84jnwa8kxcw5z6ch3kpy0p7yigmyga94908gylpxj"; depends=[]; }; GJRM = derive2 { name="GJRM"; version="0.2-6.4"; sha256="0mzcisxw6487ckpw0ac538dcs6dhjw74n8aki6w6zp699jn4jnin"; depends=[copula distrEx evd gamlss_dist ggplot2 ismev magic matrixStats mgcv mnormt numDeriv psych Rmpfr scam survey survival trust VGAM VineCopula]; }; GK2011 = derive2 { name="GK2011"; version="0.1.3"; sha256="13vafhbgcsj485f12qv962y07v3hil3pla51vkl2b030amzy86jv"; depends=[]; }; - GLCMTextures = derive2 { name="GLCMTextures"; version="0.3.8"; sha256="1qh0djskfc6407527kdxzi0yfrnqn4kjf8723gp92kq1kaqjishj"; depends=[raster Rcpp RcppArmadillo terra]; }; + GLCMTextures = derive2 { name="GLCMTextures"; version="0.3.9"; sha256="1f073m3mh3prgigd3knkr6796zgmkfd1sna0zsswa0msqr5qskw6"; depends=[raster Rcpp RcppArmadillo terra]; }; GLDEX = derive2 { name="GLDEX"; version="2.0.0.9.3"; sha256="0xv9w4kmivmmcnn19a6s6d1ilhi1misdgrp07ks7rbd177zjy5vs"; depends=[cluster spacefillr]; }; GLDreg = derive2 { name="GLDreg"; version="1.1.0"; sha256="1ls9jfk3vp5r1d90vzkni0fcxlkn70i2pszw1pxnscxxhz112dq0"; depends=[ddst GLDEX]; }; GLIDE = derive2 { name="GLIDE"; version="1.0.5"; sha256="01164gh0j4g0hambiq92bxrd3j3z2psg19faj32mvhmn4c3k2m8i"; depends=[doParallel foreach MASS]; }; @@ -1930,12 +1965,12 @@ in with self; { GMDH2 = derive2 { name="GMDH2"; version="1.8"; sha256="1cqpwnncxir9gc6vwzclm0av9hzd2a74xvl3w73dpzafvzkg4x67"; depends=[e1071 glmnet magrittr MASS nnet plotly randomForest xtable]; }; GMDHreg = derive2 { name="GMDHreg"; version="0.2.2"; sha256="1q583l0nsd4x1zm4fhh1q3kw3rh1v1vlaczkc59kzfs1h0l83hp2"; depends=[]; }; GMKMcharlie = derive2 { name="GMKMcharlie"; version="1.1.5"; sha256="1c7zb83p4r46h42xsjaj3c8zrnhrrhvggz4nqmasp52fh6gdarz6"; depends=[Rcpp RcppArmadillo RcppParallel]; }; - GMMAT = derive2 { name="GMMAT"; version="1.4.1"; sha256="0zyxnch7k4c5vm1wk769lxaqa2sdgj4lrsimzwi94bpmdrvpda44"; depends=[CompQuadForm data_table foreach Matrix Rcpp RcppArmadillo]; }; + GMMAT = derive2 { name="GMMAT"; version="1.4.2"; sha256="151bc1mn69kmswkn6i5czmadsnymkw4yvgph8s7z3i6xc66r8s5y"; depends=[CompQuadForm data_table foreach Matrix Rcpp RcppArmadillo]; }; GMMBoost = derive2 { name="GMMBoost"; version="1.1.5"; sha256="0ysy5av49fmswhn66b67lvbvzb5k6x6i9y0h9yrkkllssrghd7dr"; depends=[magic minqa]; }; GMPro = derive2 { name="GMPro"; version="0.1.0"; sha256="0xhja221wz89cm76qbq01nqz73jx7d2zx9i2ky5vd31zkspmlqkm"; depends=[combinat igraph transport]; }; GMSE = derive2 { name="GMSE"; version="1.0.0.2"; sha256="08564m2j6xlrh658syczxcl0149g54wkqc6irgsafqxvl3fdjs52"; depends=[shiny shinycssloaders shinydashboard shinyjs]; }; GMSimpute = derive2 { name="GMSimpute"; version="0.0.1.0"; sha256="1hmn5ss81df9j9ibgibs95j98irqzif94vq0c861mq4a65y59fcp"; depends=[ggplot2 glmnet reshape2]; }; - GNAR = derive2 { name="GNAR"; version="1.1.2"; sha256="0a9xpdg1g1r1l4mga85bkyxqfrpac48f5bvi60bin7s46y2c5jam"; depends=[igraph matrixcalc wordcloud]; }; + GNAR = derive2 { name="GNAR"; version="1.1.3"; sha256="1kffr4yxfl7af5vc06nx3zw1zcwbj3mxcsn44zgdz9yfvw3ppcjq"; depends=[ggforce ggplot2 ggpubr igraph matrixcalc rlang viridis wordcloud]; }; GNE = derive2 { name="GNE"; version="0.99-5"; sha256="0a796zppqvjgymh03xh7wdb26m0ir2gsavm37278liaj3nzk2jkz"; depends=[alabama BB nleqslv SQUAREM]; }; GNRS = derive2 { name="GNRS"; version="0.3.4"; sha256="0aq6rq5b3jq9yj8hhyxjin38f2008qsix4zm20nyhqx0k0hizql1"; depends=[httr jsonlite RCurl]; }; GNSSseg = derive2 { name="GNSSseg"; version="6.0"; sha256="1zkj98xh63wfyyygg2ahq3m54xlvi3x9sy0rhcn2dlfvbxaxfl4k"; depends=[capushe robustbase]; }; @@ -1943,9 +1978,9 @@ in with self; { GOFShiny = derive2 { name="GOFShiny"; version="0.1.0"; sha256="04m08d9w8qqbql86c18qpnwym7agry8wspfwrnbbyp52h2pn2gxb"; depends=[rhandsontable rmarkdown shiny]; }; GORCure = derive2 { name="GORCure"; version="2.0"; sha256="1hazin0q74hf16azxa5h08kfj7g1079q77n2fn4fahpfxb8hmvwm"; depends=[ICsurv MASS pracma survival]; }; GOplot = derive2 { name="GOplot"; version="1.0.2"; sha256="1y8dv0kbzpr9za91njw0x233vx5d13vqml9hmpddcyi9s6va5nix"; depends=[ggdendro ggplot2 gridExtra RColorBrewer]; }; - GOxploreR = derive2 { name="GOxploreR"; version="1.2.6"; sha256="1s2f0ns09vvk6q7fd9fgdw7mcr7qib8mvia1xp9dw4rnq0i6ca1k"; depends=[annotate biomaRt dplyr ggplot2 ggraph GO_db gontr igraph network]; }; - GPArotateDF = derive2 { name="GPArotateDF"; version="2022.12-1"; sha256="0j1hi761grjsv6bgvgjigbysk565f3kf8ynf93q7wsx1m38wv4pk"; depends=[GPArotation]; }; - GPArotation = derive2 { name="GPArotation"; version="2023.8-1"; sha256="1syg3snv95dv3pas5y5kqsm2hrmg1pdzgmy1m8nx9qkpwiwx8ig4"; depends=[]; }; + GOxploreR = derive2 { name="GOxploreR"; version="1.2.7"; sha256="0878czn9fyjh52a8qwmffl47x1jy8pw4m35wzicxj7k7ck58ws9k"; depends=[annotate biomaRt dplyr ggplot2 ggraph GO_db gontr igraph network]; }; + GPArotateDF = derive2 { name="GPArotateDF"; version="2023.11-1"; sha256="161mml6pwcqza6asn7315lqkn69k9k1l9rwa59f9m68v427a5lr0"; depends=[GPArotation]; }; + GPArotation = derive2 { name="GPArotation"; version="2023.11-1"; sha256="0gsb6n23iwvnxqak6rnc003bzj2xbnz9k05m8jgc6vb9whp1rmz2"; depends=[]; }; GPBayes = derive2 { name="GPBayes"; version="0.1.0-5.1"; sha256="1yi1xc27kdylw23nc84phnmyzhlxca20pcjvlwxykpmkag81qygw"; depends=[Rcpp RcppEigen RcppProgress]; }; GPCERF = derive2 { name="GPCERF"; version="0.2.1"; sha256="1hf07jgw9nhv0i2dwi05h8bman3kgzyhpaq2k7dans65vxspc64h"; depends=[cowplot ggplot2 logger MASS Rcpp RcppArmadillo Rfast rlang spatstat_geom SuperLearner wCorr xgboost]; }; GPCMlasso = derive2 { name="GPCMlasso"; version="0.1-6"; sha256="1vhlpsv86z4vz441n3jaincqizhvslc1c9zd3gah4swmqphlpdqz"; depends=[caret cubature ltm mirt mvtnorm Rcpp RcppArmadillo statmod TeachingDemos]; }; @@ -1959,7 +1994,7 @@ in with self; { GPRMortality = derive2 { name="GPRMortality"; version="0.1.0"; sha256="0k5pfyl7r5vsac927aqx19lz93vyk5l3ydqkazn2hwwaw1lh2wav"; depends=[rstan]; }; GPSCDF = derive2 { name="GPSCDF"; version="0.1.1"; sha256="1l50a6p81lykiqlqiwb6kix5s6wzwdi8vddqhl418dlwlsh83ybf"; depends=[dplyr MASS nbpMatching nnet survival]; }; GPSeqClus = derive2 { name="GPSeqClus"; version="1.4.0"; sha256="0bs6swzj2zh2dgyiwxirimz5gdk7vfssb7ga0cqmr9s5ckvgh8ir"; depends=[geosphere htmlwidgets leaflet leaflet_extras plyr purrr sf sp suncalc]; }; - GPUmatrix = derive2 { name="GPUmatrix"; version="0.1.1"; sha256="1yhz6gsqjgzy7gcshpb8mx8fxjn4pfwph08bkks7k7aw77byf01m"; depends=[]; }; + GPUmatrix = derive2 { name="GPUmatrix"; version="1.0.1"; sha256="1clcyni54cdfhrnqqjyllc34ilf43yh1yrx2jb4x8m4zk7j42hm8"; depends=[]; }; GPareto = derive2 { name="GPareto"; version="1.1.7"; sha256="05hb6x3hh7h3dy9750gryk3f169b2shhl93gkb370g7h9y87vmi1"; depends=[DiceDesign DiceKriging emoa KrigInv ks MASS pbivnorm pso randtoolbox Rcpp rgenoud rgl]; }; GPfit = derive2 { name="GPfit"; version="1.0-8"; sha256="05mpiyi2vxv0wqp422n1mnxa8msc4daq40cwpnpngbcwqhlgqkby"; depends=[lattice lhs]; }; GPoM = derive2 { name="GPoM"; version="1.4"; sha256="01j9v4a8ahfddd2mibqs44wjv5q7vm1rsa3nbswfm8x0vg7qv70c"; depends=[deSolve float rgl]; }; @@ -1968,14 +2003,14 @@ in with self; { GRAPE = derive2 { name="GRAPE"; version="0.1.1"; sha256="1jzvf45ch8x8f2x9kmvv02xz9bix5vplh8143vc4m1yyq42x09c6"; depends=[]; }; GRCRegression = derive2 { name="GRCRegression"; version="1.0"; sha256="05ll1ncxqnkyp5231xlpkmzd07m2rnmcdzcc68mq1gqfcahakdl1"; depends=[MASS pracma]; }; GRCdata = derive2 { name="GRCdata"; version="1.0"; sha256="0nshii6kfvffncgcrmm7wvniq94j9djj84jikcb6ck49viikkrky"; depends=[cubature nloptr]; }; - GREENeR = derive2 { name="GREENeR"; version="0.1.2"; sha256="1clrpzic95hyyf1xknyhpf9ls92zd9sf5ykylhbq7lmjc709kk61"; depends=[classInt data_table dplyr FME ggplot2 gridExtra magrittr networkD3 parallelly reshape2 sf tidyselect tmap]; }; + GREENeR = derive2 { name="GREENeR"; version="0.1.3"; sha256="0194cggs12bm2s9dzxy2f81r3ply9pi63vmkxaxn8fz96bba0kqj"; depends=[classInt data_table dplyr FME ggplot2 gridExtra magrittr networkD3 parallelly reshape2 sf tidyselect tmap]; }; GREMLINS = derive2 { name="GREMLINS"; version="0.2.1"; sha256="16l2mzd6xm2yk1hs5333w9lfz7iymkwmi3k80yxal9dxqh5hajkb"; depends=[aricode blockmodels igraph pbmcapply R6]; }; GRIDCOPULA = derive2 { name="GRIDCOPULA"; version="1.0.0"; sha256="02xyklc8648z3c3pfd3xshlfn5wpkyglc84dqh8sbpba7017gcvr"; depends=[fields ggplot2 limSolve pracma reshape2 Rsolnp]; }; GRNNs = derive2 { name="GRNNs"; version="0.1.0"; sha256="1c36km6g4fcsvpirlh88fl3zq9pdpdyfilahfx949salj0gnqsn6"; depends=[cvTools rdist scales vegan]; }; GROAN = derive2 { name="GROAN"; version="1.3.1"; sha256="1g6n00gnz47w06wkx0sha97qxxyhc8n2y8zaagqx7krgzx7lkha3"; depends=[plyr rrBLUP]; }; GRS_test = derive2 { name="GRS.test"; version="1.2"; sha256="1g560n81kqf81n1z3s4yxl24r386q21avjknz6msqzp4xhxhr4l6"; depends=[]; }; GRShiny = derive2 { name="GRShiny"; version="1.0.0"; sha256="0i8qcqk97lm2pwjl2s6lfa4p6c69p8xl3q88bpn706ib687f5j3x"; depends=[bslib data_table dplyr DT flextable ggplot2 gt lavaan magrittr MASS mirt officer openxlsx purrr readr sass shiny shinyWidgets sirt stringr tidyr]; }; - GRSxE = derive2 { name="GRSxE"; version="1.0.0"; sha256="1mfsfkfgz12vm99jsln8fimmy852dx20xfnj6ibqrjhjpniv8x5d"; depends=[glmnet ranger]; }; + GRSxE = derive2 { name="GRSxE"; version="1.0.1"; sha256="0wzaddhqxygw7p81ni2dl2fwr5kwb4qjar126n9mq8n6bkbvq2yk"; depends=[glmnet ranger]; }; GRTo = derive2 { name="GRTo"; version="1.3"; sha256="1xkcx2agvrpfnmplgaqx70vz303v8rhwnxdyr4hmdlf4h92lbv8i"; depends=[bootstrap]; }; GRelevance = derive2 { name="GRelevance"; version="1.0"; sha256="1v1zcsk563cs6c1xn1qzm4v3yydmpr59hkz40xafkq4jbq9k2s9g"; depends=[MASS mvtnorm philentropy]; }; GSA = derive2 { name="GSA"; version="1.03.2"; sha256="1f1mrxxdbdlnibgav6nsvbpniz2x3km2svc0hf43spb4zicn0z8p"; depends=[]; }; @@ -2003,54 +2038,56 @@ in with self; { GWASbyCluster = derive2 { name="GWASbyCluster"; version="0.1.7"; sha256="0ivlkxbh8m23vbnjfmhk0vfczd5b8lzy9w4gm1m6jpvdm40kn70x"; depends=[Biobase limma rootSolve snpStats]; }; GWASinlps = derive2 { name="GWASinlps"; version="2.2"; sha256="1q5gaam554r2wxwsdgxjx6hngs2q850hbrkz8y5248i46pz16pcc"; depends=[fastglm horseshoe mombf Rcpp RcppArmadillo survival]; }; GWASinspector = derive2 { name="GWASinspector"; version="1.6.5"; sha256="0856bspcpywb07v1g1lwhlp2cfxla9m264g1dyhl61i9yxr10c9d"; depends=[data_table futile_logger ggplot2 gridExtra hash ini kableExtra knitr openxlsx R_utils rmarkdown RSQLite]; }; + GWEX = derive2 { name="GWEX"; version="1.1.2"; sha256="0klwiknlngdxyp42wvxiph965pa90qn97rf2bra1y7bn063r7lns"; depends=[abind doParallel EnvStats fGarch foreach lmomco MASS mvtnorm nleqslv Rcpp RcppArmadillo Renext]; }; GWI = derive2 { name="GWI"; version="1.0.2"; sha256="0gwbidvdzk7b1w880baa338h7cikvlzvqmbmdxca4r83jzzwxlj1"; depends=[]; }; GWLelast = derive2 { name="GWLelast"; version="1.2.2"; sha256="1nm4w5m4ca6npmpvh9nb0cnrbzlyv95nvvhgs3pqcrw4igagm4hj"; depends=[doParallel foreach geosphere glmnet sp spgwr]; }; GWPR_light = derive2 { name="GWPR.light"; version="0.2.1"; sha256="0ilgmdsfdrbam86vvlzm1avd337rqq1al0cvrl6i5cjpwaffncih"; depends=[data_table doParallel dplyr foreach GWmodel iterators lmtest plm sp]; }; GWRLASSO = derive2 { name="GWRLASSO"; version="0.1.0"; sha256="172gjp4f3i2na53l04ddsz588qmhfs4fwdnbnvpjvkrc8xsp9yf2"; depends=[glmnet Matrix numbers qpdf]; }; GWRM = derive2 { name="GWRM"; version="2.1.0.4"; sha256="13g91bx7b0cf1rnyc6azkvjilvc3kjynb8nclmbh8n3ccm6b0v2r"; depends=[doParallel foreach]; }; - GWSDAT = derive2 { name="GWSDAT"; version="3.1.1"; sha256="0z35ywf33lpbsv0fkdqq5d17nfq1cp0za8pq4lb1ckbkv3w974ls"; depends=[deldir digest geometry Kendall lattice lubridate MASS Matrix officer raster readxl rhandsontable sf shiny shinycssloaders shinydashboard shinyjs sm sp splancs zoo]; }; + GWSDAT = derive2 { name="GWSDAT"; version="3.2.0"; sha256="0a9pmlr7r8axamk2vjmi8f1j16bd8zkax2k42mlb1cb0w722m2gb"; depends=[deldir digest geometry Kendall lattice lubridate MASS Matrix officer raster readxl rhandsontable sf shiny shinycssloaders shinydashboard shinyjs sm sp splancs zoo]; }; GWalkR = derive2 { name="GWalkR"; version="0.1.3"; sha256="0njga2h721vmz900z69sabf5vlzpws3fjawqrasj7y2w5hbcc4zk"; depends=[htmlwidgets jsonlite openssl shiny]; }; GWmodel = derive2 { name="GWmodel"; version="2.3-1"; sha256="13f09dlgzji3412lgzc6fg0zfhzfqj3d2g2hlda4caidppc4x4zq"; depends=[FNN Rcpp RcppArmadillo robustbase sf sp spacetime spatialreg spdep]; }; GWnnegPCA = derive2 { name="GWnnegPCA"; version="0.0.4"; sha256="1yinzlp22z9z5fk9f1nm14i408yfm5kfgkn3pqnh4bkghs569ivg"; depends=[geodist nsprcomp pracma sf sp spData]; }; GWpcor = derive2 { name="GWpcor"; version="0.1.7"; sha256="0q43673pmm2c6kss688fpz10b39y3jn1kblv13p8ky0bk82hmcvi"; depends=[corpcor doParallel dplyr foreach geodist pracma sf sp]; }; GWsignif = derive2 { name="GWsignif"; version="1.2"; sha256="0bss5s3ijnlckz44p7jj49bn2r8nwqckpzwzcv0vci915q8jfsj2"; depends=[]; }; - GaSP = derive2 { name="GaSP"; version="1.0.4"; sha256="14wjg5zgas6zj98qlwjdmr32byrn6bazg1dxpjh02n6md5dfysbp"; depends=[]; }; + GaSP = derive2 { name="GaSP"; version="1.0.5"; sha256="1xwh8wmvwsqf0d0zra65gadvbra229daiimz0zqnmlrlga2hdfqp"; depends=[]; }; GameTheory = derive2 { name="GameTheory"; version="2.7.1"; sha256="1mq8406zgh4yww2jb7xvvmizyis9cb2hwdliacr4hxpjg38c3jdn"; depends=[combinat gtools ineq kappalab lpSolveAPI]; }; GameTheoryAllocation = derive2 { name="GameTheoryAllocation"; version="1.0"; sha256="0733vmyr0d9scjd5ixpnggr548snd7nj70knf5hbzc59nmbc5y11"; depends=[e1071 lpSolveAPI]; }; - Gammareg = derive2 { name="Gammareg"; version="3.0"; sha256="1wh5k3nazycki0h094m4d0nnign8yksgnrrnrm3yka1s7mqzv781"; depends=[]; }; + Gammareg = derive2 { name="Gammareg"; version="3.0.1"; sha256="0y3iqhrnppznqmx7sfibmwq3yq1l0jd8cfnpv0hch9byllh0syad"; depends=[]; }; GauPro = derive2 { name="GauPro"; version="0.2.11"; sha256="011dw5fcpws0w05iyz5m1zfj1mj3ha1jnnky3pbi0d0n5jmx1h1h"; depends=[lbfgs R6 Rcpp RcppArmadillo]; }; GaussSuppression = derive2 { name="GaussSuppression"; version="0.7.0"; sha256="0vddpsw8cjx0ipybywrzjgvb3k966ij53wv1hlh9vj15q9fp2x5h"; depends=[Matrix RegSDC SSBtools]; }; GaussianHMM1d = derive2 { name="GaussianHMM1d"; version="1.1.1"; sha256="0c9khbg44yf04wp80bizd7j86gif1apqqafxyvi8692rrhf1r3ax"; depends=[doParallel foreach]; }; - GeDS = derive2 { name="GeDS"; version="0.1.3"; sha256="1ddq4hnyl3m3s4cchccxiqphi742ljcm86zqpa01a5nrjbnr87x6"; depends=[Matrix Rcpp Rmpfr]; }; + GeDS = derive2 { name="GeDS"; version="0.1.4"; sha256="05zmghjcqsnbdyvc2v2hfzj9ymr9m90rhjlryxdf3bdmjarh8l57"; depends=[Matrix Rcpp Rmpfr]; }; GeNetIt = derive2 { name="GeNetIt"; version="0.1-6"; sha256="1ay40ym6khs016bs7ljcn7krqn9bmj2csd7p4nhzapbhp4g45wsc"; depends=[dplyr exactextractr igraph nlme sf sfnetworks spdep terra tidygraph]; }; - GeSciLiVis = derive2 { name="GeSciLiVis"; version="1.1.1"; sha256="052aws057h8j36c8k6ls9b3qd1kn69x84lvcxx45dfbb7z4jgfnr"; depends=[biomartr rentrez]; }; + GeSciLiVis = derive2 { name="GeSciLiVis"; version="1.2.0"; sha256="1zb2zy5gmb9zwpxcpam1b8bh0vjhzdg99xardr1vlm83383gxcjb"; depends=[biomartr rentrez]; }; GenAlgo = derive2 { name="GenAlgo"; version="2.2.0"; sha256="1pihqxif2v62hwf5761fshyhigcjmlgbvp2j7immxlsysjfw5xgq"; depends=[ClassDiscovery MASS oompaBase]; }; GenBinomApps = derive2 { name="GenBinomApps"; version="1.2"; sha256="03pgzrj5d3cjhadv4f6an4vm90fj0wxcsi9lx7znrlrjp8qvyjvh"; depends=[]; }; GenEst = derive2 { name="GenEst"; version="1.4.9"; sha256="0ifqzpqrc9bgg6sp8zx30lvcz9kcbzivw5sf8f3axnwzfia9x376"; depends=[DT gsl gtools hellno htmltools lubridate MASS matrixStats mvtnorm Rcpp shiny shinyjs survival]; }; - GenMarkov = derive2 { name="GenMarkov"; version="0.1.0"; sha256="06bq43ry25g75qxlnrz02s393sv4r5v7m8gw0d96gpmldc76aax1"; depends=[alabama fastDummies Hmisc matrixcalc maxLik nnet]; }; + GenMarkov = derive2 { name="GenMarkov"; version="0.2.0"; sha256="1dqs8wapdpmgqnrf4xgvdmaz74gck23sbnpjxzj2g03gl8k9lq5w"; depends=[alabama fastDummies Hmisc matrixcalc maxLik nnet]; }; GenOrd = derive2 { name="GenOrd"; version="1.4.0"; sha256="17mfrj1fwj8mri1w0bl2pw1rqriidmd67i7gpn9v56g9dzw5rzms"; depends=[MASS Matrix mvtnorm]; }; - GenSA = derive2 { name="GenSA"; version="1.1.10.1"; sha256="16wla8k6ibxy58hhn7qd02k96lc7j6skaj6g5ap6lqmm854ki4wh"; depends=[]; }; + GenSA = derive2 { name="GenSA"; version="1.1.12"; sha256="0m5y0hmhcc40d9a24pz5iqw5diip7sn7bih5s01x5dvqqasnx6vk"; depends=[]; }; GenTag = derive2 { name="GenTag"; version="1.0"; sha256="0yirl7n7p7w1dfbbr48v1151qyqm7p9m00vc6jq0s2d6bjdspin9"; depends=[]; }; + GenTwoArmsTrialSize = derive2 { name="GenTwoArmsTrialSize"; version="0.0.4.5"; sha256="17si0vxha3cx59b2wpnlxzhvq4kkzgv746r3jgp2cfg6jmfinbwc"; depends=[dplyr Hmisc TrialSize]; }; GenWin = derive2 { name="GenWin"; version="1.0"; sha256="0fy5ws481xxk16x6wj7z8mwdzy044lqkqkw36xf1yxq18yxcg9xj"; depends=[pspline]; }; GenderInfer = derive2 { name="GenderInfer"; version="0.1.0"; sha256="1bdihxxwmp8ffb5blc8hkxnxh2z72vkq1sjak25njq8b1kwnazvn"; depends=[binom ggplot2]; }; GeneCycle = derive2 { name="GeneCycle"; version="1.1.5"; sha256="08pr8xgcznm04c4lhvzv2qnzij5vj7pjzyj9pr1pqpmc977h8dvg"; depends=[fdrtool longitudinal MASS]; }; GeneF = derive2 { name="GeneF"; version="1.0.1"; sha256="04fmnlj42m9ahq1504pymhq930azr8a5lyggc3bl5awqv1agpzf6"; depends=[]; }; GeneNet = derive2 { name="GeneNet"; version="1.2.16"; sha256="1r1khga3nxxjghs4vnbymzp0cwb1q17zw2v3a94qz8fsrirq1sf1"; depends=[corpcor fdrtool longitudinal]; }; GeneScape = derive2 { name="GeneScape"; version="1.0"; sha256="1yjz9bc5qy46z6ha9c7khx6mgzyqqbx3aq5w7nqw5zfym1zkfiaq"; depends=[corpcor MASS]; }; + GeneSelectR = derive2 { name="GeneSelectR"; version="1.0.0"; sha256="1gwh6yzs7w6vrfli4rcqvapy7pgvab15n6jwd9psplggnwpwa0kv"; depends=[cowplot dplyr ggplot2 glue magrittr RColorBrewer reshape2 reticulate rlang testthat tibble tidyr tmod]; }; GeneralOaxaca = derive2 { name="GeneralOaxaca"; version="1.0"; sha256="19j5c5xr6mdb6pmih94wbjas4yh0dmsqfggg8clvdxkpwk0h338v"; depends=[boot]; }; GeneralisedCovarianceMeasure = derive2 { name="GeneralisedCovarianceMeasure"; version="0.2.0"; sha256="0xgxmfcpx3mnmp5hxdy5wiihj693qlksv6jxfb9ba4dy2glzdacf"; depends=[CVST kernlab mgcv xgboost]; }; - GeneralizedHyperbolic = derive2 { name="GeneralizedHyperbolic"; version="0.8-4"; sha256="01gqfvmzfslhxdnigzbl3rd55hk6r0kgd8fm9xjl0kb9vmb735lm"; depends=[DistributionUtils MASS]; }; + GeneralizedHyperbolic = derive2 { name="GeneralizedHyperbolic"; version="0.8-6"; sha256="1a9n9hb6cxp9silcpskhp67l7p1azm72y4dngj48nngcavrm8i4r"; depends=[DistributionUtils MASS]; }; GeneralizedUmatrix = derive2 { name="GeneralizedUmatrix"; version="1.2.6"; sha256="1mzxszsk2mzswndrq0j125l1b5qdmjryg2swb7f2mnipa5k3mqbm"; depends=[ggplot2 Rcpp RcppArmadillo RcppParallel]; }; GeneralizedWendland = derive2 { name="GeneralizedWendland"; version="0.5-2"; sha256="04f52ilvijjm740vciys4vhcsxj9j10p7y4pphqawh4yvdc6fanv"; depends=[BH fields Matrix optimParallel Rcpp RcppEigen spam spam64]; }; GenericML = derive2 { name="GenericML"; version="0.2.2"; sha256="1r2jl3say11by21ja7m6m55yzmgrdmp4nlanvh8h4cm8v37bzql7"; depends=[abind ggplot2 lmtest mlr3 mlr3learners sandwich splitstackshape]; }; GeneticSubsetter = derive2 { name="GeneticSubsetter"; version="0.8"; sha256="0bd4snv3dwabc7mknmd2rjmffj67xq535x0bycajhd83d1jhjars"; depends=[]; }; GenoScan = derive2 { name="GenoScan"; version="0.1"; sha256="0p98imfvvz7l94kim3pxypyjs2pbxng4a2nagbafbady82ylr2vi"; depends=[data_table MASS Matrix seqminer SKAT]; }; GenoTriplo = derive2 { name="GenoTriplo"; version="1.0.3"; sha256="11cycy2ans4l6jilr8ga9z6a1r2j0spsmdb5xrxrnwbbwl85czyk"; depends=[cowplot doParallel dplyr DT foreach ggplot2 htmltools processx rlang Rmixmod shiny shinyBS shinythemes tidyr]; }; - GenomeAdapt = derive2 { name="GenomeAdapt"; version="1.0.0"; sha256="0jsxqhx62vbsr0hcqk9wrfsg3l3wbnx64pzxx18ps366vg7fxmii"; depends=[gdsfmt qvalue robust SNPRelate]; }; GenomeAdmixR = derive2 { name="GenomeAdmixR"; version="2.1.7"; sha256="14qnabg1pj8sg2bvd3k4m467bh1q2zfjr0ljxn1ny031sqwis4cy"; depends=[ggplot2 ggridges hierfstat Rcpp RcppArmadillo RcppParallel rlang stringr tibble vcfR]; }; GenomicTools_fileHandler = derive2 { name="GenomicTools.fileHandler"; version="0.1.5.9"; sha256="09l87wf78bj49cdh7r3x81hn15c4pihxih8l59xxrpgdhp69268c"; depends=[data_table snpStats]; }; GeoAdjust = derive2 { name="GeoAdjust"; version="2.0.0"; sha256="0251672j2vl9jck31zfcqzsyw8pphzs934j8ljjmnw9qqd3gzd2p"; depends=[fields fmesher ggplot2 Matrix RcppEigen sf SUMMER terra TMB]; }; - GeoModels = derive2 { name="GeoModels"; version="1.1.4"; sha256="063ggs9i946q836yk3m4jpf20kpa0l3p7r658vv8i9zzibcfkcgq"; depends=[codetools data_table dfoptim dotCall64 fields GpGp GPvecchia hypergeo lamW mapproj nabor numDeriv optimParallel pbivnorm plotrix pracma scatterplot3d shape sn spam VGAM zipfR]; }; + GeoModels = derive2 { name="GeoModels"; version="1.1.5"; sha256="13zwclvwilygzvyqpiarj5g6wgjy7rkb4m0bahd6r638sy6ys13z"; depends=[codetools data_table dfoptim dotCall64 fields GpGp GPvecchia hypergeo lamW mapproj nabor numDeriv optimParallel pbivnorm plotrix pracma scatterplot3d shape sn spam VGAM zipfR]; }; GeoMongo = derive2 { name="GeoMongo"; version="1.0.3"; sha256="0m5nz5q81jz2v2bl2dbgdbdprrkckxr2c67qn0cg9vms0pi3fawr"; depends=[data_table geojsonR R6 reticulate]; }; GeoRange = derive2 { name="GeoRange"; version="0.1.0"; sha256="0krj9570wkhdvpaqkq3nf0maglqd44mpwn4v1bymvgpk1i1wf5p3"; depends=[moments proj4 raster sp velociraptr]; }; GeoWeightedModel = derive2 { name="GeoWeightedModel"; version="1.0.2"; sha256="0nff8whj5306mbi668y3i31sfbdslyd7cdm6rxafxhii643bm93a"; depends=[beepr cartography dplyr DT GWmodel raster readxl shiny shinyalert shinyBS shinybusy shinydashboard shinyjs shinyWidgets sp spdep]; }; @@ -2078,7 +2115,8 @@ in with self; { GiniDistance = derive2 { name="GiniDistance"; version="0.1.1"; sha256="1x9a59x60a2jdnql3wn4za510rv9qp84j6b9m6la81j3mmy92vzz"; depends=[energy randomForest Rcpp RcppArmadillo readxl]; }; GiniWegNeg = derive2 { name="GiniWegNeg"; version="1.0.1"; sha256="1wqwjalsyp55si839cil6na3khigm0mwn6qkg0kjylq10pabfk2a"; depends=[]; }; GlarmaVarSel = derive2 { name="GlarmaVarSel"; version="1.0"; sha256="080v2qckihhacclxi2zscslbwbc6179pc7g02lyqaicf9wrsr8ff"; depends=[ggplot2 glmnet Matrix]; }; - GlmSimulatoR = derive2 { name="GlmSimulatoR"; version="0.2.5"; sha256="114mhhpv7phvrzvzar4s1a9032iyhcvixjx4h7b5vd1p23m9sayz"; depends=[assertthat cplm dplyr ggplot2 magrittr MASS statmod stringr tweedie]; }; + Glarmadillo = derive2 { name="Glarmadillo"; version="1.1.1"; sha256="14k24f6yjx9jlvmd7q1lw6nyajzpsmsbdj8jq3v8ad1kdrip05x7"; depends=[Rcpp RcppArmadillo]; }; + GlmSimulatoR = derive2 { name="GlmSimulatoR"; version="1.0.0"; sha256="1xfbmxsdlgpwlss5bfb4arlnblj4s6pzyn9npy04v5aara1m04na"; depends=[assertthat cplm dplyr ggplot2 magrittr MASS statmod stringr tweedie]; }; GlobalOptions = derive2 { name="GlobalOptions"; version="0.1.2"; sha256="0gkm77w6db9ajyncy1xdcivplap06a51zi99m009kylccschd2a7"; depends=[]; }; Gmedian = derive2 { name="Gmedian"; version="1.2.7"; sha256="0m9fp54y4m1xxjqphpnxhw2hspzdca9qc9l60znpnynyj5m6cy2k"; depends=[Rcpp RcppArmadillo robustbase RSpectra]; }; Gmisc = derive2 { name="Gmisc"; version="3.0.3"; sha256="1s8gkqg54622xhsmhl7n5pff2b6xfij111m7h3i4inzfjfmziq43"; depends=[abind checkmate forestplot glue Hmisc htmlTable knitr lattice lubridate magrittr Rcpp rlang rmarkdown stringr XML yaml]; }; @@ -2092,10 +2130,12 @@ in with self; { GoogleImage2Array = derive2 { name="GoogleImage2Array"; version="0.99.2"; sha256="0ycv7lr1p2rsfln5829yk6nk9h1yk24rirjr1fk27999n42iy1pk"; depends=[EBImage magrittr rvest xml2]; }; GoogleKnowledgeGraphR = derive2 { name="GoogleKnowledgeGraphR"; version="0.1.0"; sha256="1jxiq1s48skn43pydsw8s67hf70v9fhhw2drcx9vni3c3szs44qd"; depends=[curl jsonlite]; }; GpGp = derive2 { name="GpGp"; version="0.4.0"; sha256="1b8cda2k67bpxllq94mmr6nn50884v9laci5n9kd7hmiky16q8na"; depends=[BH FNN Rcpp RcppArmadillo]; }; + GrFA = derive2 { name="GrFA"; version="0.1.0"; sha256="00iya5aqff0f6r0rz0axgfjq41fmxzli5zymz4l7ddnxxp78mxdc"; depends=[mvtnorm]; }; + GrabSVG = derive2 { name="GrabSVG"; version="0.0.2"; sha256="0w53wwaaap90shm17jjkyvcx55cpvpmd9cp9f7cbf36v73n74wjm"; depends=[fitdistrplus Matrix RANN spam sparseMatrixStats]; }; Grace = derive2 { name="Grace"; version="0.5.3"; sha256="0r41zvgdd5rqm15axqqssik6plwy7snpgw8m32labkfn3f0pp7n0"; depends=[glmnet MASS scalreg]; }; GramQuad = derive2 { name="GramQuad"; version="0.1.1"; sha256="02bpxs7yyd9805h8whvzfaxg43z4n5zxdj57hx36r3cx03hh26zd"; depends=[pracma]; }; GraphPCA = derive2 { name="GraphPCA"; version="1.1"; sha256="0x6j3lyd70zc0c1al1407ma8crzi174d5dqkz6lx4vx24knrlhbs"; depends=[FactoMineR ggplot2 ggplot2movies scatterplot3d]; }; - GrapheR = derive2 { name="GrapheR"; version="1.9-86-4"; sha256="0bmwzgc9nzqp1vkybhhc7mxdzsa3l96i42iahvwkzv10ac3nfd5l"; depends=[]; }; + GrapheR = derive2 { name="GrapheR"; version="1.9-86-5"; sha256="1cjll41857dh5r1jb3zkbxpkqj2qj9s7867nwfdn0h3ws52fb304"; depends=[]; }; GreedyEPL = derive2 { name="GreedyEPL"; version="1.2"; sha256="19bgrgzb7jdqpljcbhr3d98y331k1b8fbwgcipak6zkhk2vr6vqz"; depends=[Rcpp RcppArmadillo]; }; GreedyExperimentalDesign = derive2 { name="GreedyExperimentalDesign"; version="1.5.6.1"; sha256="057wpfg5kfgcvfgry12agn7arg917jwgvxhjz6q1na13y8pmqnrv"; depends=[checkmate kernlab nbpMatching Rcpp rJava rlist stringi stringr survey]; }; GreedyExperimentalDesignJARs = derive2 { name="GreedyExperimentalDesignJARs"; version="1.0"; sha256="14i6m5qlh1fca9xmzid01hicd3bkf6rzl139ss78gvw544zrapw7"; depends=[rJava]; }; @@ -2111,13 +2151,13 @@ in with self; { Grouphmap = derive2 { name="Grouphmap"; version="1.0.0"; sha256="0wmzgd76adwq2gm8p1cxgy1kj1vl83bfsx4d9afk7wh3dxgq4c7l"; depends=[clusterProfiler dplyr limma org_Mm_eg_db pheatmap stringr]; }; GrpString = derive2 { name="GrpString"; version="0.3.2"; sha256="14ss6assqk6s9kv4bvzlydm8qrbnslm4vj876q5dn2dw4k50dai1"; depends=[cluster plyr Rcpp]; }; GseaVis = derive2 { name="GseaVis"; version="0.0.5"; sha256="01c5rl05lf9abmasw9w8rxlgl55jr3faiwi1ndx993r3j8xvbcqj"; depends=[aplot DOSE dplyr ggplot2 ggpp ggrepel ggsci magrittr purrr RColorBrewer reshape2 stringr tibble]; }; - GsymPoint = derive2 { name="GsymPoint"; version="1.1.1"; sha256="1fg8vqd86kcpciphmlcxlm0rk01iza7md5y8kcxp9i732n4zn7r8"; depends=[ROCR Rsolnp truncnorm]; }; + GsymPoint = derive2 { name="GsymPoint"; version="1.1.2"; sha256="0wifxgfj67wf1ax56a6j40vckrydrkw5qj7bk875gr0w0ah03a3g"; depends=[ROCR Rsolnp truncnorm]; }; + Guerry = derive2 { name="Guerry"; version="1.8.3"; sha256="01crjdgq7srn8a22a8cm4cbkxd4b0m7pm4fy5r5839ljy2k4dfs7"; depends=[sp]; }; GxEScanR = derive2 { name="GxEScanR"; version="2.0.2"; sha256="0k3avad4b2x4sqv8iilx5a8gkybjlipx50mj0la4kl9xv0azshkd"; depends=[prodlim Rcpp RcppArmadillo]; }; GxEprs = derive2 { name="GxEprs"; version="1.1"; sha256="1ylggdh0rzjz5ms107lg4jzayl0rsnqqzzmmg94j483yij7bm89f"; depends=[]; }; H2x2Factorial = derive2 { name="H2x2Factorial"; version="2.0.0"; sha256="01if0ps43xhcw6q5khdbvjd0yvvhkcj4gvdx538g2kaxzi3lrj1z"; depends=[mvtnorm]; }; HAC = derive2 { name="HAC"; version="1.1-0"; sha256="1k19qrirhzl8qaa4svf7qa90r7gphbbvm9m0977z9gd704n8b62a"; depends=[copula]; }; HACSim = derive2 { name="HACSim"; version="1.0.6-1"; sha256="0hdczpn1x6zcxya8qlp82fzzpli3z2kfvynk5sqk97h1d55d27i4"; depends=[ape data_table matrixStats pegas Rcpp RcppArmadillo shiny]; }; - HARModel = derive2 { name="HARModel"; version="1.0"; sha256="17sajqi2g5z69gvnfhkn850jkavi8syhm58xadd2khrm73nvwh2i"; depends=[Rcpp RcppArmadillo sandwich xts zoo]; }; HBSTM = derive2 { name="HBSTM"; version="1.0.2"; sha256="1rw0sav1xrw5sraah3yhw5ypyf99pi9h323nf02qidqfzr9xb214"; depends=[fBasics maps MASS]; }; HBV_IANIGLA = derive2 { name="HBV.IANIGLA"; version="0.2.6"; sha256="1ngvw17k4i4cxdr59fsbm437fn1wqxjz7zn1l6aciygy3rlcncw9"; depends=[Rcpp]; }; HCR = derive2 { name="HCR"; version="0.1.1"; sha256="14s46dyw3ifp3pwwlcwbbl47i6hy2whjj1n65i28am5a33nycgha"; depends=[data_table]; }; @@ -2126,6 +2166,7 @@ in with self; { HCTR = derive2 { name="HCTR"; version="0.1.1"; sha256="1hg8mpallwxpmamk6q8x87w5hlqqwvbahfw5zmr9pisiagbwcsay"; depends=[glmnet harmonicmeanp MASS ncvreg Rdpack]; }; HCmodelSets = derive2 { name="HCmodelSets"; version="1.1.3"; sha256="0jchr8ncjpl2ljwf09cmpv679vdla11r1vkylhqaacdp1zdb93w6"; depends=[ggplot2 mvtnorm survival]; }; HDBRR = derive2 { name="HDBRR"; version="1.1.4"; sha256="03jl1m099z6gj2ipi7rnjnrd2rmk4zs54332rwlqyf40dv7ndbz1"; depends=[bigstatsr MASS numDeriv]; }; + HDCD = derive2 { name="HDCD"; version="1.0"; sha256="0yx2c5i2lfsnc9ra09bkhhvbwlfpi2a5r53riqhf2mb0vnxsxjcy"; depends=[mclust Rdpack]; }; HDCI = derive2 { name="HDCI"; version="1.0-2"; sha256="0wxbv54kbygymhh4r7052vnbj603c1kya01ykvmqzzkjyyfzidkz"; depends=[doParallel foreach glmnet iterators lattice Matrix mvtnorm slam]; }; HDCurves = derive2 { name="HDCurves"; version="0.1.2"; sha256="1656ia0qn4yrbkcrpjiyqq72fbvb088d07ma7kchvg875nzwj42v"; depends=[]; }; HDDesign = derive2 { name="HDDesign"; version="1.1"; sha256="1jim4h9bwn8r637va7m81kwwsfwyzs9pzn5a9i7c8xz8b1x191bj"; depends=[]; }; @@ -2133,10 +2174,11 @@ in with self; { HDInterval = derive2 { name="HDInterval"; version="0.2.4"; sha256="1xlljhzd30mi7pic7q55h7hv0bccxfc2g32piv8jx830svnz01xv"; depends=[]; }; HDJM = derive2 { name="HDJM"; version="0.1.0"; sha256="1vv1q7hdq12wh5nbr8zh1f8fzx5caaq4b39wqy99mxpx8cnsb87n"; depends=[Rcpp RcppArmadillo RcppEnsmallen statmod survival]; }; HDLSSkST = derive2 { name="HDLSSkST"; version="2.1.0"; sha256="19snvpgiq8kxzqv6yimzn7nfxkch2xkm0sk41m7g4xwr412dn49j"; depends=[Rcpp]; }; + HDMAADMM = derive2 { name="HDMAADMM"; version="0.0.1"; sha256="0whcd0315cxn45ilsrh11baylrxvk0w4vcsqk6sps6fcpg4m2ak5"; depends=[dqrng Rcpp RcppEigen]; }; HDMFA = derive2 { name="HDMFA"; version="0.1.0"; sha256="01gsz862m038y0b4y5aqq08n5514cjz9lxvqh0ybv2rd4gjmvnxs"; depends=[MASS RSpectra]; }; HDMT = derive2 { name="HDMT"; version="1.0.5"; sha256="11wr7n6gj75k3a339h9hm167pni3vdbbnwwblc2b0wfljxsif6hf"; depends=[fdrtool qvalue]; }; HDOMDesign = derive2 { name="HDOMDesign"; version="1.0-1"; sha256="1wfq4w73dkkmfwn3n9rwpjlpvm1ak76dv9ymh6zqfls5whdmp59g"; depends=[HadamardR]; }; - HDRFA = derive2 { name="HDRFA"; version="0.1.3"; sha256="0jm0lv4kgg908h34zx875f468ignl6dxmjn4mxjck5fg1w17rjvi"; depends=[pracma quantreg]; }; + HDRFA = derive2 { name="HDRFA"; version="0.1.4"; sha256="1dwys28vj5icv33x9zy4r62dslvwr1ajv29gs9lkalrc2wjh2qx2"; depends=[pracma quantreg]; }; HDShOP = derive2 { name="HDShOP"; version="0.1.3"; sha256="18i17vv71wc0rqfl2i9bcfl1ry3bd61x9nd6g57x37ggjp7i6j5k"; depends=[Rdpack]; }; HDSinRdata = derive2 { name="HDSinRdata"; version="0.1.0"; sha256="071ywrxw2qhiqb7djd71y20zw5mja6c7abkkrk04nsdsl9m98793"; depends=[]; }; HDSpatialScan = derive2 { name="HDSpatialScan"; version="1.0.4"; sha256="1hwqdwr4jl887sgnjwq3gmxjhk6zz45nasvy3x7i7rmrqylxig60"; depends=[DT fmsb matrixStats pbapply plotrix purrr raster Rcpp RcppArmadillo sf sp SpatialNP swfscMisc TeachingDemos]; }; @@ -2151,13 +2193,13 @@ in with self; { HEDA = derive2 { name="HEDA"; version="0.1.5"; sha256="0arya76isiaxmgmhl7q93vmga9apmbkq3scgz7zhgnrkd8mkh0i1"; depends=[dplyr ggplot2 lubridate rlang zoo]; }; HEMDAG = derive2 { name="HEMDAG"; version="2.7.4"; sha256="1dmfy5bbnjmjb4d7430i38z9hvpcrwafj6hw46118hwzcl4b6ldv"; depends=[doParallel foreach graph plyr precrec preprocessCore RBGL]; }; HETOP = derive2 { name="HETOP"; version="0.2-6"; sha256="1fjwyqh7l296pghmc4m81q8icgbhvqvxr61zd638fr46gls3ky2p"; depends=[R2jags]; }; - HEtools = derive2 { name="HEtools"; version="0.1.0"; sha256="02mm6vy6iicl4jazcpg60slcnjgsdr1cd5j82dmjwzbm8b81az5m"; depends=[polynom]; }; + HEtools = derive2 { name="HEtools"; version="1.0.0"; sha256="0qfygdpmzrnih0p24xdqpxbgmcqbcgvbdjihh3x4cqspawcsffs5"; depends=[polynom]; }; HGMND = derive2 { name="HGMND"; version="0.1.0"; sha256="1iwqssj66q9dfgddzwqmnnpvxnvlrq7p1axm95lpkf3vrpn5rp6b"; depends=[genscore]; }; HGNChelper = derive2 { name="HGNChelper"; version="0.8.1"; sha256="0qwkk5658j4j6w2wgvxkp38cyvscjp93d3zc7gb97vcihqx0ngxa"; depends=[]; }; HGSL = derive2 { name="HGSL"; version="1.0.0"; sha256="1p453xr3d1bmqc6mrmzb0hz9p0gp25m6v6qr0l3bapcf71vzbvq1"; depends=[]; }; HGraph = derive2 { name="HGraph"; version="0.1.0"; sha256="1y35lzym3mbr1v7j7v55i9mxb1vn65xzgp5542va1bngvrm25hjf"; depends=[knitr]; }; HH = derive2 { name="HH"; version="3.1-49"; sha256="0yxqh0699x0vfk18p9850wziyglif0lywnljdl14biq71b5z1khj"; depends=[abind colorspace gridExtra Hmisc lattice latticeExtra leaps multcomp RColorBrewer reshape2 Rmpfr shiny vcd]; }; - HHG = derive2 { name="HHG"; version="2.3.4"; sha256="1ghw1rpf7n0dfclvxm3p02ym247p3rsncj9f9f97892lk9yin29c"; depends=[Rcpp rmarkdown]; }; + HHG = derive2 { name="HHG"; version="2.3.7"; sha256="037bq1b14332i5pdmxjfm6bcyz4pcq40rh2vd3wrxpkq224g80v4"; depends=[Rcpp]; }; HIMA = derive2 { name="HIMA"; version="2.2.1"; sha256="0r9dr3dvav8m8sxk84fm6m8y7fvsbd6dfblma17vizvslxpi5vwm"; depends=[conquer doParallel foreach glmnet hdi HDMT hommel iterators MASS ncvreg quantreg survival]; }; HK80 = derive2 { name="HK80"; version="0.0.2"; sha256="0c8scpzl5xgqm9rlsvh5nl3bz42i5pzvb873j9bn3bi15gcknbny"; depends=[]; }; HKRbook = derive2 { name="HKRbook"; version="0.1.3"; sha256="1bhyhv72c8afyzwx7h6p33mgfvhgqfh5c5f85gj803p6ai60h544"; depends=[DT formatR highlight MASS scatterplot3d shiny shinydashboard shinydashboardPlus shinyWidgets]; }; @@ -2174,7 +2216,7 @@ in with self; { HMMpa = derive2 { name="HMMpa"; version="1.0.1"; sha256="0c3jmvcklywqsjmskx7zbw4d3l8i6bzr5h741v8iwgyw67mjn37g"; depends=[]; }; HMP = derive2 { name="HMP"; version="2.0.1"; sha256="0233p7gajr2aic0c5snni4g9v1bwn4zd5i3kagxhqxa3mvy5c7wc"; depends=[dirmult doParallel foreach ggplot2 gplots lattice MASS rpart rpart_plot vegan]; }; HMPTrees = derive2 { name="HMPTrees"; version="1.4"; sha256="1jha64iyb0816rdg2i3z7i31z02r72k6acmvw0ibw3sli8zcvphb"; depends=[ape dirmult doParallel foreach HMP]; }; - HMR = derive2 { name="HMR"; version="1.0.2"; sha256="1zxfz88sr9m0706r76qizlwcy4il2v49x1lx77nqx40626p4zp7n"; depends=[]; }; + HMR = derive2 { name="HMR"; version="1.0.3"; sha256="1r0aw3x26a0w1pa02m449bpg6xrp1ikxv44f403snb8k48la9brc"; depends=[]; }; HMTL = derive2 { name="HMTL"; version="0.1.0"; sha256="0pn192bikij1yqms6vnv1n313g4q21966314zvg1krrwisklny9r"; depends=[Matrix pROC]; }; HMVD = derive2 { name="HMVD"; version="1.0"; sha256="0agzvsl2n3zg3i519b93jqpiq9zix0bbrjdzk3ymsbb42dzkmj0d"; depends=[MASS]; }; HOasso = derive2 { name="HOasso"; version="1.0.1"; sha256="07xihcjj3gfxl1fd5x1dvfmfg8m19rfjzq110ay3vrj38sxxvkiw"; depends=[igraph Rdpack]; }; @@ -2196,10 +2238,12 @@ in with self; { HTSSIP = derive2 { name="HTSSIP"; version="1.4.1"; sha256="1j2f6f3i4di4bvsk44gxz0narg45ld2rahfn23wpgni5bszy0vb3"; depends=[ape coenocliner DESeq2 dplyr ggplot2 igraph lazyeval magrittr phyloseq plyr stringr tidyr vegan]; }; HTT = derive2 { name="HTT"; version="0.1.2"; sha256="0345ydb3rjdkj4zm6xr5y4kf6plvxfgbpwkjs81pls99mr208qwz"; depends=[ggplot2 ggraph igraph Rcpp]; }; HUM = derive2 { name="HUM"; version="2.0"; sha256="06jx3f2zb52gjp05bq3zmgjkyiaa2j9v0biq23gg88gplpign6jw"; depends=[gtools Rcpp rgl]; }; + HVT = derive2 { name="HVT"; version="23.11.1"; sha256="0d7zffvphjb0x1756y8806r268zbmvqhm0f9ig3fmz28nj5bn7km"; depends=[cluster conf_design data_table deldir dplyr ggplot2 Hmisc magrittr MASS plyr polyclip purrr reshape2 scales sp splancs tidyr]; }; HWEintrinsic = derive2 { name="HWEintrinsic"; version="1.2.3"; sha256="0ijrczm0mm37a3v4v0hd7zb662rcyzqf58z4nbhrix1nf6vzj47m"; depends=[]; }; HYDROCAL = derive2 { name="HYDROCAL"; version="1.0.0"; sha256="0xq53nysn9kv6p1clgdjxsvj7qjlcmg02frfpw9fnzim53pzzrp4"; depends=[]; }; HYPEtools = derive2 { name="HYPEtools"; version="1.6.0"; sha256="0iyai28gqx6d92h59g314rsr5l6y9l7zywyxdlqpzf0plnh0w6hi"; depends=[clipr data_table dplyr ggplot2 ggpubr ggrepel lubridate ncdf4 patchwork pbapply purrr rlang scales stringr tidyr tidyselect zoo]; }; HaDeX = derive2 { name="HaDeX"; version="1.2.2"; sha256="1qj6n03pd5kd5ff5h4v8wmnqxxylsxx1p6i88nahqkah2mzg9jdr"; depends=[data_table dplyr DT ggplot2 gsubfn latex2exp readr readxl reshape2 shiny stringr tidyr]; }; + HadIBDs = derive2 { name="HadIBDs"; version="1.0.0"; sha256="1mj6a4cp51kpsw93hz67smz9vc17ss5675wnalbq84wj89p2ma3l"; depends=[]; }; HadamardR = derive2 { name="HadamardR"; version="1.0.0"; sha256="0nr8m6fchpmlvhyisb61y0fymjjrk2k1sd67r14n87sgn3mafh4a"; depends=[numbers openxlsx]; }; HanStat = derive2 { name="HanStat"; version="0.90.0"; sha256="0ycppc7cq8jpg2xldl692mxg73agra3sq6zjzlpz7vvr9kqf64g6"; depends=[boot car crayon devtools ggplot2 ggpubr lmtest olsrr]; }; HandTill2001 = derive2 { name="HandTill2001"; version="1.0.1"; sha256="0wgr3rhz1iklirpnzk25afh8fv1qpi2ijmx4xwzplw3w3qir4yv6"; depends=[]; }; @@ -2239,20 +2283,21 @@ in with self; { HodgesTools = derive2 { name="HodgesTools"; version="1.0.0"; sha256="02i87pd5ah3mmf03878354p8nqh3bgn9cnrl1pnnrb3qw7afj19q"; depends=[data_table dplyr ggplot2 ini magrittr qqman RColorBrewer readr RecordLinkage]; }; Holomics = derive2 { name="Holomics"; version="1.0.0"; sha256="13b45kbp8s0zcqldn8bg964cqkc5b6jqh764szl8v27cxg0chvcf"; depends=[BiocParallel bs4Dash config dplyr DT ggplot2 golem igraph mixOmics openxlsx readxl shiny shinyalert shinybusy shinyjs shinyvalidate shinyWidgets stringr tippy visNetwork]; }; Homeric = derive2 { name="Homeric"; version="0.1-3"; sha256="1vcs8fj39zpz45p7gph0mnx65hgr35na0b79i8llyw7i1h7zqzxr"; depends=[]; }; - HomomorphicEncryption = derive2 { name="HomomorphicEncryption"; version="0.1.0"; sha256="1agw7s9ccj4hi74scqqs8v65gsavxb5c3217rw0kk9cibq7bma2v"; depends=[polynom]; }; + HomomorphicEncryption = derive2 { name="HomomorphicEncryption"; version="0.3.0"; sha256="16ls9ps67dxg7xa6zr83gcj5s2a981dpc295lyr6vz09y6m6jcl5"; depends=[HEtools polynom]; }; HospitalNetwork = derive2 { name="HospitalNetwork"; version="0.9.3"; sha256="183nb9h9b1z1ifpnzcxa8wh3xm2id6fnq9vqd4vkbxzw7wlyd86b"; depends=[checkmate data_table ggplot2 ggraph igraph lubridate R6]; }; Hotelling = derive2 { name="Hotelling"; version="1.0-8"; sha256="04x2x3anwf4d71dm7x6y08ysk7ygysshc0avisyshbl52x39l8si"; depends=[corpcor]; }; HotellingEllipse = derive2 { name="HotellingEllipse"; version="1.1.0"; sha256="1xvm54iqgdnqjpkmgi4ssgpdz2pap60y9z9whrv2ky3q16mjqycz"; depends=[dplyr FactoMineR ggforce ggplot2 lifecycle magrittr purrr tibble]; }; HuraultMisc = derive2 { name="HuraultMisc"; version="1.1.1"; sha256="0bi1y7icrg0f4n9ah9dsrijnfr39bqg3799rz4hccd1b061f0rvj"; depends=[cowplot dplyr ggplot2 HDInterval Hmisc magrittr reshape2 rstan tidyr]; }; HurreconR = derive2 { name="HurreconR"; version="1.1"; sha256="1grdhvdkvp1s9x9mwpy4f38ayp5zv7mkiwz1pvjm4zlgjpzzq4l4"; depends=[terra]; }; + HyMETT = derive2 { name="HyMETT"; version="1.1.2"; sha256="0f1gismhkwi8ynnxlbsvpal15ab2d2j4arrvah25bchybwffhqqg"; depends=[checkmate dplyr EnvStats lmomco lubridate plyr rlang tibble zoo]; }; HyRiM = derive2 { name="HyRiM"; version="2.0.2"; sha256="02hb8kl02872xvyhg0k19xavcmhqmf0ddfnxx5nxlpzgzb432csd"; depends=[compare grImport2 polynom purrr Rglpk]; }; HybridDesign = derive2 { name="HybridDesign"; version="1.0"; sha256="19hgljm7mhd00s2lvvxmdr35zifnl0kymmcx06jfqkld3qd3zli6"; depends=[ResourceSelection testit]; }; - HybridMicrobiomes = derive2 { name="HybridMicrobiomes"; version="0.1.0"; sha256="0qn3pymx47a7r52mjj39n41aclmwmwspmwzlhjmdl84n8yy9c2fg"; depends=[compositions PERMANOVA phyloseq rgl rlang]; }; + HybridMicrobiomes = derive2 { name="HybridMicrobiomes"; version="0.1.1"; sha256="05y3hcw18q9v3fpv0i0msmr9v4hnfgk0ni55wk3k786h96m2swsv"; depends=[ape compositions geometry ks PERMANOVA phyloseq rgl rlang StereoMorph vegan]; }; HydroCode = derive2 { name="HydroCode"; version="1.0.3"; sha256="1kykxra9cg1n17l2zmnjk1qv8450v4qix5sylm1k9xxzirbb7wca"; depends=[sp]; }; HydroMe = derive2 { name="HydroMe"; version="2.0-1"; sha256="1pzf3z3f2xqmj7ixdg01k8552l4vz7yaf2mb53q59ihfhlbqchni"; depends=[]; }; HydroPortailStats = derive2 { name="HydroPortailStats"; version="1.0.3"; sha256="1f5h9xqn4vn9wbnvlshbc8r200vx1pwm9ic7sdzsv4z0j7z7wl1j"; depends=[evd mvtnorm numDeriv]; }; HyperG = derive2 { name="HyperG"; version="1.0.0"; sha256="0w84ph0vd03i22s8g52jf2w96yd80ynbh6x0p88apg92jdsapcrc"; depends=[gtools igraph Matrix mclust proxy RSpectra]; }; - HyperbolicDist = derive2 { name="HyperbolicDist"; version="0.6-4"; sha256="0xsgy995z79qdamwdgs335r8zr2bk5cyw4wijqyvgwx3pqmwvvmr"; depends=[]; }; + HyperbolicDist = derive2 { name="HyperbolicDist"; version="0.6-5"; sha256="10bcqychdc3rrdyqng5sxjbr8a6wljwnqa4gff99dmx8774sdw16"; depends=[]; }; HypergeoMat = derive2 { name="HypergeoMat"; version="4.0.2"; sha256="06ljg2v0dbqi9mf2l236p616x62cbx4q05qymbsj8inmajwv0piz"; depends=[EigenR gsl JuliaConnectoR Rcpp RcppEigen]; }; IADT = derive2 { name="IADT"; version="1.0.0"; sha256="1hyshs7dlpbsvpkn56fi7cfn54qkwmwyf9bhh1yks9nnhdxpbsgd"; depends=[mgcv mvnfast Rdpack Rmpfr]; }; IAPWS95 = derive2 { name="IAPWS95"; version="1.2.4"; sha256="0jccq1pj0b8xpa7zs20ikkwlyj0f2q5qzdz8kllm0qiwlrrj7jsn"; depends=[ggplot2 pander Rcpp]; }; @@ -2287,7 +2332,7 @@ in with self; { ICSClust = derive2 { name="ICSClust"; version="0.1.0"; sha256="0sw8ck9384xc0rfj7q7yd0fjacilp64fx8b0l0cw5k920rnzskbj"; depends=[cluster fpc GGally ggplot2 heplots ICS mclust moments mvtnorm otrimle Rcpp RcppArmadillo RcppRoll rrcov scales tclust]; }; ICSKAT = derive2 { name="ICSKAT"; version="0.2.0"; sha256="13cx2480kyzcwxp9b57p3rq4fs6x1fd4wpwm7iwiqjh17v4vb54l"; depends=[CompQuadForm dplyr magrittr Rcpp RcppEigen rje survival zoo]; }; ICSNP = derive2 { name="ICSNP"; version="1.1-2"; sha256="1hyndbnfpvkdxgjihh3m8wd1hpdb0n346bl03z9ry2blppci2jvs"; depends=[ICS mvtnorm]; }; - ICSOutlier = derive2 { name="ICSOutlier"; version="0.3-1"; sha256="00hp24rxqhlm3lxqjqxn2vg5x10ihgz5yvd454rhjg3f2nrbqvm7"; depends=[ICS moments mvtnorm]; }; + ICSOutlier = derive2 { name="ICSOutlier"; version="0.4-0"; sha256="07ngszaq2i0l90fjnqsizw8y2xlb3b0gdsavwcm1l8fh2z1cf1b6"; depends=[ICS moments mvtnorm]; }; ICSS = derive2 { name="ICSS"; version="1.1"; sha256="0kmsw8347ka5n0qncx7hqgs153ihkmxbl0wc5kqlb2l42sl6rp8x"; depends=[rstack]; }; ICSShiny = derive2 { name="ICSShiny"; version="0.5"; sha256="0a13vps0mkv5qs6qnl7ar0mdbkbd7i1c6kgwahmkb3id3n9bw0cl"; depends=[DT ICS ICSNP ICSOutlier rrcov shiny simsalapar]; }; ICSsmoothing = derive2 { name="ICSsmoothing"; version="1.2.7"; sha256="141ly37ccj1ky9lr37baa3vkbbkr73z8nxfkyavjrzhzw8d5r2rr"; depends=[ggplot2 polynom]; }; @@ -2301,8 +2346,9 @@ in with self; { IDCard = derive2 { name="IDCard"; version="0.3.0"; sha256="06b5zqmgh4clni3mv6ab2a52r4z34isbz0hd1i61793gps9fkc0y"; depends=[stringr]; }; IDE = derive2 { name="IDE"; version="0.3.1"; sha256="1pbfxhcbnmn0mh7a96ff58p4dpkb0di7l0v40nqyjk4jbkpd8rfl"; depends=[DEoptim dplyr FRK ggplot2 Matrix sp spacetime sparseinv tidyr]; }; IDEAFilter = derive2 { name="IDEAFilter"; version="0.1.2"; sha256="1nwsq5jy374f2sdnrxw79kq3wklydrygm4qsd6v6npdqw55jli2l"; depends=[crayon ggplot2 pillar purrr RColorBrewer shiny shinyTime]; }; - IDEATools = derive2 { name="IDEATools"; version="3.5.1"; sha256="05amichli11yny5idmvl0k28v910nscf89qgghl5cjpqzcwq9jr4"; depends=[data_table ggimage ggplot2 ggpubr ggtext jsonlite openxlsx pdftools readxl rlang rmarkdown shiny stringi tibble]; }; + IDEATools = derive2 { name="IDEATools"; version="3.5.2"; sha256="0g5wi9mjvcnz0s6x4rnhfa2xkdgja21b3k4z9iz8hszismdzs5sq"; depends=[data_table ggimage ggplot2 ggpubr ggtext jsonlite openxlsx pdftools readxl rlang rmarkdown shiny stringi tibble]; }; IDF = derive2 { name="IDF"; version="2.1.2"; sha256="19mg7a83badb3wqnrmx5ric0nlfdb33wcxfmq9457s8019ghvpvv"; depends=[evd fastmatch ismev pbapply RcppRoll]; }; + IDMIR = derive2 { name="IDMIR"; version="0.1.0"; sha256="0871ibdpnhqbf0ighyl9254ad8wy52gyi7i2nry19is1kr7av40s"; depends=[egg fastmatch forestplot ggplot2 igraph pheatmap survival survminer]; }; IDPSurvival = derive2 { name="IDPSurvival"; version="1.2"; sha256="0hifs8vw3rxlb5vlxs1433pcv2dh7p0mxpgb2n03d98f20vkdwfw"; depends=[gtools Rsolnp survival]; }; IDPmisc = derive2 { name="IDPmisc"; version="1.1.20"; sha256="0zy6mxqa8arq0vvhsdcifzm3085c23rnwa1n36fhircph1xwvfdw"; depends=[lattice]; }; IDSA = derive2 { name="IDSA"; version="2.1"; sha256="0ld2359ksnw9jrjicnqikh5r321mfy2i7vzlhh9phm60k0qf5j98"; depends=[GD ggplot2 kableExtra reshape2]; }; @@ -2331,7 +2377,7 @@ in with self; { ILSE = derive2 { name="ILSE"; version="1.1.7"; sha256="0jx0f7lk18k0wsypi4ynq1zqbb9hsmcmf0chxyrpqkadfqb6mgwr"; depends=[pbapply Rcpp RcppArmadillo]; }; IMD = derive2 { name="IMD"; version="1.2.2"; sha256="0cixq15n38bj49xp9cxra7rzi9sp5fbf4ac4m7nl2iiswscy15fr"; depends=[dplyr janitor readr rlang tibble]; }; IMEC = derive2 { name="IMEC"; version="0.2.0"; sha256="1k85pr6s6lysn53n59i8rcdhyg7r3il5avbckvvz43p6lh0fgxpy"; depends=[igraph IsingSampler qgraph]; }; - IMIFA = derive2 { name="IMIFA"; version="2.1.10"; sha256="033y5y3i63z0gj7pqhf6d73l3lcfnv2srfs244p3wsal4xv11hg4"; depends=[matrixStats mclust mvnfast Rfast slam viridisLite]; }; + IMIFA = derive2 { name="IMIFA"; version="2.2.0"; sha256="08h53w1axvmvnd4z1nf5bsps5sr6g8a77q6pvg39ss7jcfqm800v"; depends=[matrixStats mclust mvnfast Rfast slam viridisLite]; }; IMIX = derive2 { name="IMIX"; version="1.1.5"; sha256="0j5wh4j039xmwxb75msgfvh4f7p5xafvn2z47vyn12hd4dznwndq"; depends=[crayon ggplot2 MASS mclust mixtools mvtnorm]; }; IMP = derive2 { name="IMP"; version="1.1"; sha256="0ilvgz2bngffyx6ifqqx1snsn6mmq7rx3wg44093yrviaw39qdfv"; depends=[dplyr ggplot2 shiny tidyr]; }; IMPACT = derive2 { name="IMPACT"; version="0.1.1"; sha256="0ai22gvmfj9j00cw742szfqqay63b5lmnszkwwdfdvidls43v0bm"; depends=[]; }; @@ -2339,13 +2385,14 @@ in with self; { IMak = derive2 { name="IMak"; version="2.1.0"; sha256="1972iwam1kkkb3107pq8jhmm3q0ypn92p519srzm82xnbf0m7828"; depends=[png]; }; IMmailgun = derive2 { name="IMmailgun"; version="0.1.2"; sha256="09acmi6xj186fb8nhj8q0nxmkp2p32a1l95glzvz84gax4xakhz8"; depends=[httr]; }; INCATome = derive2 { name="INCATome"; version="1.0"; sha256="1gbmcirs49ydmk5rg2vl5gdy39dfx9psw5mijibzjszcfjar3kqs"; depends=[genefilter limma multtest RankProd siggenes]; }; - INLABMA = derive2 { name="INLABMA"; version="0.1-11"; sha256="0wzyb3c7zpksqz198kigi4rpblvk0rjamngmyabw5xdpizxdg6zi"; depends=[Matrix sp spdep]; }; + INLABMA = derive2 { name="INLABMA"; version="0.1-12"; sha256="0dkb5v08ws38cfv33r4asz6shik08zd3535sc71gsgcg6cnj2d3q"; depends=[Matrix sp spdep]; }; + INLAjoint = derive2 { name="INLAjoint"; version="23.10.28"; sha256="1h1xwd968c60bl7mkpf2cvq9i19xb32ms95kfi0r6pks3rq0ghzd"; depends=[ggplot2 lme4 numDeriv]; }; INLAspacetime = derive2 { name="INLAspacetime"; version="0.1.7"; sha256="0b3ahvgqkgb32zpr5cbyz1k0sszzm6pim1dxyhka6mv73732qzgw"; depends=[fmesher Matrix sf sp]; }; INQC = derive2 { name="INQC"; version="2.0.5"; sha256="1gz7gyq5n2bmh18yrg29nz8kmdc0b35chwqxr6y2sggdm8j28akd"; depends=[evd gdata suncalc]; }; INSPECTumours = derive2 { name="INSPECTumours"; version="0.1.0"; sha256="1jh6p3bgnrjixqzvjl0z3nv6lh01fx3x925h3na2pi3scqx5gx0s"; depends=[brms dplyr DT ggeffects ggplot2 knitr lme4 modelr pander plotly purrr readxl rlang rmarkdown shiny shinyalert shinyFeedback shinyjs shinytoastr shinyvalidate tidybayes tidyr tippy vroom waiter]; }; INSPIRE = derive2 { name="INSPIRE"; version="1.5"; sha256="0938l50yxnb5q628mp874ayx9ybvcjddis20y1hzm5cmlsg0hqhg"; depends=[missMDA]; }; INTRIGUE = derive2 { name="INTRIGUE"; version="0.1.0"; sha256="1l1vfl0m4iqniwp4bp1bfjpqhwahg341fpyxhryr0j8lypqaw7si"; depends=[dplyr rlist SQUAREM]; }; - IOHanalyzer = derive2 { name="IOHanalyzer"; version="0.1.8.2"; sha256="0814ycb0fchg9m5244i0wqj3y8dik9szmjcnjjv2w930sn2ccqcw"; depends=[colorRamps colorspace data_table dplyr eaf ggplot2 httr knitr magrittr plotly RColorBrewer Rcpp reshape2 rjson shiny stringi viridis]; }; + IOHanalyzer = derive2 { name="IOHanalyzer"; version="0.1.8.6"; sha256="136h8iz70b7b1c0zhn1xwb0wbc2vpbm3ghmq87gkaw94cxfknimv"; depends=[colorRamps colorspace data_table dplyr eaf ggplot2 httr knitr magrittr plotly RColorBrewer Rcpp reshape2 rjson shiny stringi viridis]; }; IOHexperimenter = derive2 { name="IOHexperimenter"; version="0.1.4"; sha256="0aacliznncl488rjsnx02pfj1mchhcyb36v816g959ll38pvc6bk"; depends=[assertthat BH magrittr Rcpp]; }; IOLS = derive2 { name="IOLS"; version="0.1.4"; sha256="0s7yrkps61czsf1avvmb1xcq53v92pfikq949a4i46lsyidl69ib"; depends=[boot matlib randomcoloR sandwich stringr]; }; IP = derive2 { name="IP"; version="0.1.1"; sha256="1xvlv8mlahyhzvl0zbj0352iiqk2smqfy3vlawz8ldlcmwvwim7k"; depends=[stringi]; }; @@ -2353,9 +2400,9 @@ in with self; { IPCWK = derive2 { name="IPCWK"; version="1.0"; sha256="0hah1xl6zli0346jh57rjc5x8vynhaysj0l481rmvznsghv6im23"; depends=[MASS survival]; }; IPDFileCheck = derive2 { name="IPDFileCheck"; version="0.7.5"; sha256="1y0qq6q98lq1srsp1mlb7mr9zn2v4j7gpzim9fgh3xarw6a89i0h"; depends=[dplyr eeptools effsize gmodels gtsummary hash kableExtra lmtest lubridate stringr testthat tidyselect tidyverse zoo]; }; IPDfromKM = derive2 { name="IPDfromKM"; version="0.1.10"; sha256="1pqi6cshiha4gnra25fgpggyi42mn2hg25s9m9mh091rn5km44q0"; depends=[dplyr ggplot2 gridExtra readbitmap survival]; }; - IPEC = derive2 { name="IPEC"; version="1.0.4"; sha256="1ij9g8w5550nxbf65yd3gs8cc15d3yk2x94fmmzk7i8rfjvfzzjq"; depends=[MASS numDeriv]; }; + IPEC = derive2 { name="IPEC"; version="1.0.6"; sha256="0574ya6w2i1h4bqz6r699biayy6hf72l3b3grp2dh4bcv52qd61b"; depends=[MASS numDeriv]; }; IPEDS = derive2 { name="IPEDS"; version="0.1.0"; sha256="122v4m3lf5ix10a1ihw1qi8w975iamscaqg2vc5f5k6z8dy9s6ph"; depends=[dplyr readr rlang tidyr]; }; - IPEDSuploadables = derive2 { name="IPEDSuploadables"; version="2.8.5"; sha256="0za69wfhqpmr6hl64kvpmw2sjhys74bnfab21zlwbxq8palhpmxh"; depends=[dplyr lubridate magrittr purrr rlang stringr svDialogs tidyr]; }; + IPEDSuploadables = derive2 { name="IPEDSuploadables"; version="2.8.7"; sha256="0v168v83b5aj86rahlz80ggb7x99npq8gx30szcp0vxicz8a0nyk"; depends=[dplyr lubridate magrittr purrr rlang stringr svDialogs tidyr]; }; IPLGP = derive2 { name="IPLGP"; version="2.0.4"; sha256="0sv4zl6kn72ajnp32k9xg011y0bjxsq3a0vcj3s0w4wwkcr1h2w5"; depends=[ggplot2 sommer]; }; IPMbook = derive2 { name="IPMbook"; version="0.1.5"; sha256="1fad52j0cb187sbj7x1i7irlvyd2jhjgr84kf7m8v3ngwsn14wp3"; depends=[abind]; }; IPPP = derive2 { name="IPPP"; version="1.1"; sha256="19ccs25fd56ns7ssi51w2jzjd4d57vyimwmfvf27mmigb537bd5y"; depends=[]; }; @@ -2380,7 +2427,7 @@ in with self; { ISLR2 = derive2 { name="ISLR2"; version="1.3-2"; sha256="0ljz5lb5srilziyqgka4rcp7d5r4hs6jq9fm3gi1g57agn896vyn"; depends=[]; }; ISM = derive2 { name="ISM"; version="0.1.0"; sha256="0by0w6zgnwcwzbmxx16s8mb1avhc6aiavqp0qkxx6hr70vrgb997"; depends=[rJava xlsx xlsxjars]; }; ISO11784Tools = derive2 { name="ISO11784Tools"; version="1.1.4"; sha256="0nl7la7g6028bal6swnfplny81ngpfcrac46nlnpk2d99bpfvfs6"; depends=[dplyr stringi stringr tibble]; }; - ISOcodes = derive2 { name="ISOcodes"; version="2022.09.29"; sha256="1rag5mb3bbyxp8n32rhfyy752cy9hh5j80lp9xljj70scvglzbjb"; depends=[]; }; + ISOcodes = derive2 { name="ISOcodes"; version="2023.12.07"; sha256="03nrcv1hh12yyqql03cr94kk3hnpynvrm4kv3plmdli2b3n1yqvk"; depends=[]; }; ISOpureR = derive2 { name="ISOpureR"; version="1.1.3"; sha256="1ydhsh3v6n7prrg0dm7hsg8wx1244g791xnz1sjyhljhm31hgwc0"; depends=[futile_logger Rcpp RcppEigen]; }; ISOweek = derive2 { name="ISOweek"; version="0.6-2"; sha256="1f1h8pgjaa14cvaj8ldl87b4vslxwvyfj46m0hkylwp73sv3g2mm"; depends=[stringr]; }; ISR = derive2 { name="ISR"; version="2022.4.22"; sha256="0j31qicbpjgl0igmk37qg10zng31xk6w4dd1izz5pzjwb3w9qkli"; depends=[MASS]; }; @@ -2391,10 +2438,12 @@ in with self; { IVYplot = derive2 { name="IVYplot"; version="0.1.0"; sha256="1v739xlim3mcw09cyp4z3cbb25ipkpwm9h378fwy2ycp8lmq32gy"; depends=[plyr]; }; IceSat2R = derive2 { name="IceSat2R"; version="1.0.4"; sha256="1jwy1fwnc2rq3c643maa2h7hrwzq0sm6iv35kil95n3pw7pkgdy3"; depends=[data_table doParallel foreach glue httr leafgl leaflet leaflet_extras leafsync lubridate lwgeom magrittr miniUI rnaturalearth rvest sf shiny units]; }; IgAScores = derive2 { name="IgAScores"; version="0.1.2"; sha256="0ckqjbn0xc894dc23gbaqzr6z6rl5h0k8gc5gjhbhwvrc2zlyfsp"; depends=[]; }; + ImCluster = derive2 { name="ImCluster"; version="0.1.0"; sha256="1ynsgadyfx6c8j27v8ylgbgn8gqm02129xcq3b1ya8b6zp4jm3ry"; depends=[dplyr]; }; ImFoR = derive2 { name="ImFoR"; version="0.1.0"; sha256="10wm0wkcz85g94m4824fm6xy1mqk9syqr3rj5fx6bbs2mkh4wxca"; depends=[caret ggplot2 ggpubr Metrics minpack_lm nlme tidyverse]; }; ImHD = derive2 { name="ImHD"; version="0.1.0"; sha256="0aawa3slyf2i05q73v8qicwkf80ry527c87z72anapy8nfzkija6"; depends=[e1071 ggplot2 randomForest reshape2 rpart xgboost]; }; ImML = derive2 { name="ImML"; version="0.1.5"; sha256="1q4pwn47v0623qamzpsnldq4g5fhqd0bgkc5357h3588r9ahcdq3"; depends=[caret dplyr e1071 ggplot2 randomForest rlang rpart]; }; ImNN = derive2 { name="ImNN"; version="0.1.0"; sha256="1xs5pfq4wfd26d8vdhl0zjynrjkzjmnyqx3gprn7dxk1i41r3bg1"; depends=[ggplot2 MLmetrics neuralnet]; }; + ImVol = derive2 { name="ImVol"; version="0.1.0"; sha256="02bwjd6w40j9y3kq3zk1cwn6y9srpm2m390y63778w9qj4pk67lh"; depends=[caret dplyr ggplot2 nls2 tidyr tidyverse]; }; Immigrate = derive2 { name="Immigrate"; version="0.2.1"; sha256="0pnnvv63kkg7pgyblb1vlx54c6169n40fn58aypdy5xcnknabvxn"; depends=[pROC Rcpp]; }; ImpShrinkage = derive2 { name="ImpShrinkage"; version="1.0.0"; sha256="18ik1sl2628hcz37rkdq2fdbx1c6hs7svalsfc90w3ww0aijy91y"; depends=[]; }; ImpactEffectsize = derive2 { name="ImpactEffectsize"; version="0.6.2"; sha256="06dywikscwvigcw50h9yd3fjf3h25ymkxphwy8r6n3v2nl9iba3m"; depends=[caTools matrixStats parallelDist Rcpp]; }; @@ -2406,19 +2455,18 @@ in with self; { InPosition = derive2 { name="InPosition"; version="0.12.7.1"; sha256="0d9c7dwaa1v0j8p5ff9223fc2gkbmbvyqylma2d8l4x5m92jmkv0"; depends=[ExPosition prettyGraphs]; }; InSilicoVA = derive2 { name="InSilicoVA"; version="1.4.0"; sha256="15x6d928rk9in2swbaal6hcw2nikj153fgqyd7nhdkcbs1agrsl1"; depends=[coda ggplot2 InterVA5 rJava]; }; IncDTW = derive2 { name="IncDTW"; version="1.1.4.4"; sha256="0q8ssv86gbp3v6gznzm5vkc8qhny6ycbh85jg5z4izldpx8a4fq6"; depends=[data_table ggplot2 Rcpp RcppArmadillo RcppParallel scales]; }; - IncidencePrevalence = derive2 { name="IncidencePrevalence"; version="0.5.1"; sha256="0idzkhfy53p7b8c8j08m3qyg9s9ci3w21yxy9cm0dxli0kb4bmr0"; depends=[CDMConnector checkmate cli DBI dbplyr dplyr ggplot2 glue lubridate magrittr purrr rlang scales stringr tidyr tidyselect zip]; }; + IncidencePrevalence = derive2 { name="IncidencePrevalence"; version="0.6.0"; sha256="0yaq43zkj86csc5xrqfkbggd6f50vbyihc08dgxwqz4f6lkgqdq4"; depends=[CDMConnector checkmate cli DBI dbplyr dplyr ggplot2 glue lubridate magrittr purrr rlang scales stringr tibble tidyr tidyselect zip]; }; IncomPair = derive2 { name="IncomPair"; version="0.1.0"; sha256="156mc4csbxz976md7ikjd6sqamzsfc8ik9xf1qbhrfl8y7957kbb"; depends=[]; }; IndGenErrors = derive2 { name="IndGenErrors"; version="0.1.4"; sha256="1iwq53vahcaa0cqmk8g0484drdlphips7p95z4rh6miv2bxjh8fa"; depends=[ggplot2]; }; IndTestPP = derive2 { name="IndTestPP"; version="3.0"; sha256="1z48pr8znbk1gdvjfdvszxlzhj7v88p3y7zhi1f0xw75dkfpnwwy"; depends=[]; }; IndepTest = derive2 { name="IndepTest"; version="0.2.0"; sha256="017jasqsxm5m13rhfy9gxvd8nfib5k5y5c8520p3hcffqrxr683p"; depends=[FNN mvtnorm Rdpack]; }; IndexConstruction = derive2 { name="IndexConstruction"; version="0.1-3"; sha256="08bi3x7a9plxshgj6hq58mzkf1117a7p0fd1akqjh7k8mgywifwf"; depends=[fGarch KernSmooth lubridate RcppBDT xts zoo]; }; - IndexNumR = derive2 { name="IndexNumR"; version="0.5.0"; sha256="15rjhzwygs4an51lxn66jlfww4j361b1jw4a6q3dz31bmlc9i5pg"; depends=[]; }; + IndexNumR = derive2 { name="IndexNumR"; version="0.6.0"; sha256="02ga1airmzaqb0kabg9ipq3jrwsfdafj729bwj8y5pccpks60fjl"; depends=[]; }; IndexNumber = derive2 { name="IndexNumber"; version="1.3.2"; sha256="0ff6fnkgbfwn3sasglr1aygvm9bawrvcj432xgka1vk28qnns0if"; depends=[]; }; IndexWizard = derive2 { name="IndexWizard"; version="0.2.1.0"; sha256="09qrnq8yzz4r8i7m696a1jzw91iiccwgj73176dabkh3pdrhrs3r"; depends=[]; }; - InferenceSMR = derive2 { name="InferenceSMR"; version="1.0.1"; sha256="1dxq1dsmrx9kx8vqxlbg22a91iv4skck4jhmmfk3kxi5znl121zc"; depends=[survival]; }; + InferenceSMR = derive2 { name="InferenceSMR"; version="1.0.2"; sha256="1f0glgzxaab7fxl938ac7dai2mpscdcwvh9wg76nkgbn2my7g5cg"; depends=[survival]; }; InfiniumPurify = derive2 { name="InfiniumPurify"; version="1.3.1"; sha256="0yqah4rwpishas0xyv5a7cn4v18brj33cd7f494g21b9brggafq1"; depends=[matrixStats]; }; Inflation = derive2 { name="Inflation"; version="0.1.0"; sha256="0ikhsslbg32kr9vcaxq8qwaa7ahiwvq91xwv53550wci2vyzmybp"; depends=[seasonal]; }; - Inflect = derive2 { name="Inflect"; version="1.1.0"; sha256="09904nn33libjv29n74n5nq1hj6ka8a4h3jllwpbxk9hsmnlmf9h"; depends=[data_table ggplot2 optimr plotrix readxl tidyr UpSetR writexl]; }; InflectSSP = derive2 { name="InflectSSP"; version="1.6"; sha256="14i53bsy693yh28y1akg4xd6srz077v9a8i7hx07qf73w2m84v1z"; depends=[data_table GGally ggplot2 httr jsonlite network plotrix RColorBrewer readxl svglite tidyr xlsx]; }; InfoTrad = derive2 { name="InfoTrad"; version="1.2"; sha256="0blfn59w73hjga15sw8plwvn6yq9fj95nxwp018mp1harl8wa5db"; depends=[nloptr]; }; Information = derive2 { name="Information"; version="0.0.9"; sha256="0pszwzj3r7vdvdsy9w1qz95zxp7y2bsyg36b58mm4qcvcvymd4kn"; depends=[data_table doParallel foreach ggplot2 iterators plyr]; }; @@ -2427,7 +2475,6 @@ in with self; { InjurySeverityScore = derive2 { name="InjurySeverityScore"; version="0.0.0.2"; sha256="0g52cksa774in18ykrym61l3my9zm343bgsq5mg7mki9x65xd35z"; depends=[dplyr rlang tidyr]; }; InspectChangepoint = derive2 { name="InspectChangepoint"; version="1.2"; sha256="084ji77z0dnbjrhy6z40kjbblsgk3z00z256pfknkqxd3v7sawvc"; depends=[MASS]; }; IntCal = derive2 { name="IntCal"; version="0.3.1"; sha256="0d5sd63ajmksafxfrfbd8jsgkbcxirjgd1532blylbcnwjlcws15"; depends=[]; }; - IntLIM = derive2 { name="IntLIM"; version="2.0.2"; sha256="04kjmp6akbw9yjg0lr19aripm5vjzm4bk7xqxm38hq9wn9cgli4g"; depends=[ComplexHeatmap DT ggplot2 heatmaply highcharter htmltools KernSmooth margins MASS RColorBrewer reshape2 rmarkdown shiny shinydashboard shinyFiles shinyjs testthat]; }; IntNMF = derive2 { name="IntNMF"; version="1.2.0"; sha256="09qzyvv7d4wr68qrlhcd4ivr65is3mypv1vaxpswwcjmcmyr4gzp"; depends=[cluster InterSIM MASS mclust NMF]; }; InteRD = derive2 { name="InteRD"; version="0.1.1"; sha256="18grg2pyn0p3dwqhm2251d47sd97wcjr858y64lf5chkhvcz09nk"; depends=[Biobase cowplot DescTools ggplot2 limSolve mgcv pheatmap Rcpp reshape2]; }; IntegrateBs = derive2 { name="IntegrateBs"; version="0.1.0"; sha256="1pkx4wpahd1sabzx55law3710x3vbh9yi6kii8gs2xfq3cb1llmq"; depends=[]; }; @@ -2438,7 +2485,7 @@ in with self; { InterVA5 = derive2 { name="InterVA5"; version="1.1.3"; sha256="08cnhbq1048z7qcvvj0d1br7d8jljzf48ci94aixs0y0vs8lgvvz"; depends=[curl readxl]; }; InteractionPoweR = derive2 { name="InteractionPoweR"; version="0.2.1"; sha256="1mff2kasdrkk56xqvw66m8sn6186dk0nbv8bx0izpr5qf9dz308q"; depends=[chngpt doParallel dplyr foreach ggbeeswarm ggplot2 MASS Matrix polynom rlang tidyr]; }; Interatrix = derive2 { name="Interatrix"; version="1.1.3"; sha256="1pjyfg5p6081hng9h6wcmfnlfkcs300c3x9ksdj01587b97ph9s1"; depends=[MASS]; }; - InterfaceqPCR = derive2 { name="InterfaceqPCR"; version="1.0"; sha256="12nmkv6qnzh2dnbhk1656dla6mrznh24gqblmn4xai7wg4p92fbx"; depends=[plyr reshape2 tkrplot xlsx]; }; + InterfaceqPCR = derive2 { name="InterfaceqPCR"; version="1.0.1"; sha256="0qvrazikr1i2fmxhn6wsj3ny33bwpi1fxl1mka9i139gbphdmhr1"; depends=[plyr reshape2 tkrplot xlsx]; }; InterpretMSSpectrum = derive2 { name="InterpretMSSpectrum"; version="1.3.8"; sha256="0rw2zlqa3r0f4s0nji1k7lw23a9kg3ghb9gcifyh5q6k2308g6dc"; depends=[enviPat plyr]; }; IntervalQuestionStat = derive2 { name="IntervalQuestionStat"; version="0.2.0"; sha256="0pvz5l0pvw8akmvv51c48fx1ppms9iq6s4bwscja8jk56akx2wlq"; depends=[]; }; IntervalSurgeon = derive2 { name="IntervalSurgeon"; version="1.2"; sha256="02l2r83mz4x9x40p8gxwyrqa25qk0cy22k39lv93plvcpadcs8a5"; depends=[Rcpp]; }; @@ -2457,20 +2504,21 @@ in with self; { IsoCheck = derive2 { name="IsoCheck"; version="0.1.0"; sha256="06g0srp14yiha95mbmifaqf5yr5ppjnc20nyr237ah3l776mhsif"; depends=[dplyr gtools plyr]; }; IsoCor = derive2 { name="IsoCor"; version="0.1.40"; sha256="191y51mg6kii4x99c7437888kkacml0ch53qh1gbwv10gl2c4w8z"; depends=[bsplus DT golem htmltools MALDIquant markdown plyr rmarkdown shiny shinyalert shinyjs]; }; IsoGene = derive2 { name="IsoGene"; version="1.0-24"; sha256="0flm0mszankvl3aizwsazyhvz2xkr4gfqiqywpc0r1swqj19610r"; depends=[affy Biobase ff Iso xtable]; }; + IsoMemo = derive2 { name="IsoMemo"; version="23.10.1"; sha256="0im0h5av752gy8gl48m9hclsclz7cg47k1qi9ndip66k6dinp6df"; depends=[curl jsonlite modules]; }; IsoSpecR = derive2 { name="IsoSpecR"; version="2.1.3"; sha256="0cy9y3lh20xxj9sah8s2zrwnbzk39s5xmscj4mskvn897bmlksh6"; depends=[Rcpp]; }; - IsoplotR = derive2 { name="IsoplotR"; version="5.5"; sha256="04s8yfpp5mvfpx9crgg6yadvw8jrcnkjpl4v9ac01psmkzc4yk4p"; depends=[MASS]; }; - IsoplotRgui = derive2 { name="IsoplotRgui"; version="5.5"; sha256="13kavzp938kpa6n8nz1wkrbav0hxm87zcl2hlzqppmb4pcxklqd5"; depends=[IsoplotR shinylight]; }; - IsoriX = derive2 { name="IsoriX"; version="0.9.1"; sha256="0l7d66wjq30mldqy79pwqfp607qhkc2y7hzl6kjxxvqsial6zgwq"; depends=[lattice latticeExtra numDeriv rasterVis spaMM terra viridisLite]; }; + IsoplotR = derive2 { name="IsoplotR"; version="6.0"; sha256="0mbsyifasl5x4rwfgjyxn58id25yvz5ryiannlv4drd1hjg03kz7"; depends=[MASS]; }; + IsoplotRgui = derive2 { name="IsoplotRgui"; version="6.0"; sha256="0spjw26xv33qy7zpyk5yga690wr0ibsm8m7adm1709v8l4s9vbv4"; depends=[IsoplotR shinylight]; }; + IsoriX = derive2 { name="IsoriX"; version="0.9.2"; sha256="1izpxibyz4wwpdr01z4a4zw1r1c528ydznvwrc064j9c55fiz4s2"; depends=[lattice latticeExtra numDeriv rasterVis spaMM terra viridisLite]; }; IsotopeR = derive2 { name="IsotopeR"; version="0.5.4"; sha256="0xgha5alh5y5qfz00rl73q4xlamnmrwij7kckljmy6zgrlrdnl6x"; depends=[colorspace ellipse fgui plotrix runjags]; }; IterativeHardThresholding = derive2 { name="IterativeHardThresholding"; version="1.0.2"; sha256="0vv8v61pzlykdyjivl19q8nr9p22c845y902yljgrvc9ayidczqm"; depends=[Cyclops ParallelLogger]; }; IxPopDyMod = derive2 { name="IxPopDyMod"; version="0.3.0"; sha256="1wg6m1sf8h157xi7nzml10k014dvnhcf0qyprqvasghiad7c2dc9"; depends=[checkmate magrittr]; }; JADE = derive2 { name="JADE"; version="2.0-4"; sha256="0m90rnhr5vkdv1xswr5c0j06ngzvmg73nd0kmg9m9r6a6ddddcyl"; depends=[clue]; }; JATSdecoder = derive2 { name="JATSdecoder"; version="1.2.0"; sha256="01nqj3w690gn4iqy35v215451agfx1dfgc5vbmmc5wp5r2rk2p09"; depends=[NLP openNLP]; }; - JBrowseR = derive2 { name="JBrowseR"; version="0.10.0"; sha256="0siqg09lcjdkvqlywsp9fggn574f6yn207nda3q65n0p2xprl8ry"; depends=[cli dplyr htmltools htmlwidgets httpuv ids jsonlite magrittr mime reactR readr stringr]; }; + JBrowseR = derive2 { name="JBrowseR"; version="0.10.2"; sha256="1v90lzp3md56r4mjskipq4kjvi3szv0qqcdya1hmbjklgmkygvvl"; depends=[cli dplyr htmltools htmlwidgets httpuv ids jsonlite magrittr mime reactR readr stringr]; }; JCRImpactFactor = derive2 { name="JCRImpactFactor"; version="1.0.0"; sha256="1i7853i8k03nq7ax9rypm9qcl5qgyddblgbfjp3yxi1s3a6bkwk1"; depends=[stringr]; }; JFE = derive2 { name="JFE"; version="2.5.5"; sha256="11aybw7jmvg9fnihxl7l9w9294b4841x1nqq7csw3x1pbj40a4pj"; depends=[fPortfolio tcltk2]; }; JFM = derive2 { name="JFM"; version="1.0"; sha256="08655vgfb2ll8hwjsj5lsw4849rahn3blisdqn8bwfhclrwd24xn"; depends=[MASS randomcoloR Rcpp RcppArmadillo rgl RockFab Rvcg]; }; - JGL = derive2 { name="JGL"; version="2.3.1"; sha256="02p9z32f8j60wnh1szkjr2zfa9zwyw0gqinpsvll4dymf8cjawpw"; depends=[igraph]; }; + JGL = derive2 { name="JGL"; version="2.3.2"; sha256="0zsvr20vaxhkac2mdlqzd12xqpgw4yvx4bkqwgsbvhpl34pz7dy2"; depends=[igraph]; }; JGR = derive2 { name="JGR"; version="1.9-2"; sha256="1rcmbgxwzwhzh5fa0lghjdllcfkpirdavdghvxx5fjysn7a38mjv"; depends=[JavaGD rJava]; }; JICO = derive2 { name="JICO"; version="0.0"; sha256="08ah7bjwkxm8fdk1s0vj3lpc7dvgz9llyhh4z9xsgpf4w98rwsvb"; depends=[MASS Matrix nleqslv rlist]; }; JLPM = derive2 { name="JLPM"; version="1.0.2"; sha256="0xagw84mgbqrdyz9h8d9fw2yibx7k9cp5y1pd8v835n4s10m8wx2"; depends=[lcmm marqLevAlg randtoolbox stringr survival]; }; @@ -2479,8 +2527,8 @@ in with self; { JMI = derive2 { name="JMI"; version="0.1.0"; sha256="05phkwfb9v4g9jixlvbj6br7sbi64zvrgjwfr0v87ijddkxc9si9"; depends=[Rcpp RcppArmadillo]; }; JMbayes = derive2 { name="JMbayes"; version="0.8-85"; sha256="0s11jpzflc2zg60g4ffcw23c2f4zz3mzddrc2cl5y43xl2v304lb"; depends=[doParallel foreach Hmisc jagsUI MASS nlme Rcpp RcppArmadillo rstan shiny survival xtable]; }; JMbayes2 = derive2 { name="JMbayes2"; version="0.4-5"; sha256="0qdfp3r7wfy955f956jhryvxbnnw2zrnkqq931191z2v0xmird97"; depends=[coda ggplot2 GLMMadaptive gridExtra matrixStats nlme parallelly Rcpp RcppArmadillo survival]; }; - JMdesign = derive2 { name="JMdesign"; version="1.4"; sha256="04nlxym4b339l70m0fd0r04m9lb6c7l8ajswhmy7dmix0sk99d3c"; depends=[]; }; - JNplots = derive2 { name="JNplots"; version="0.1.0"; sha256="0k46y9gi02m9z58qny1r0fa76nriw0llz9dc62x9vvy1x3qayw2j"; depends=[ape nlme scales]; }; + JMdesign = derive2 { name="JMdesign"; version="1.5"; sha256="12y9g9m38qbvibay1pm0s9zyw5hxczdysm1hxcpjqi265z9wr9wd"; depends=[]; }; + JNplots = derive2 { name="JNplots"; version="0.1.1"; sha256="0k1jdy5wdzdswzl6kz9d1r6imj3cqcmkyz7ka1d6pcbysjsj9ynn"; depends=[ape nlme scales]; }; JOPS = derive2 { name="JOPS"; version="0.1.19"; sha256="0qnycf7yd1sas0v6jclmc1y0jq9bslqlf66mqyirpxcs2lsk0327"; depends=[boot colorspace fds fields ggplot2 MASS rpart SemiPar spam SpATS]; }; JOUSBoost = derive2 { name="JOUSBoost"; version="2.1.0"; sha256="0f3rr7aw20nvmlpqrq3wzgmr55lqdqhk3wphpqq7msgvaf1zrcl7"; depends=[doParallel foreach Rcpp rpart]; }; JPEN = derive2 { name="JPEN"; version="1.0"; sha256="12rvp5bmlkwyr1gg336k655hp09gym0d2wwry70c1rz30x1sf2zs"; depends=[mvtnorm]; }; @@ -2501,10 +2549,10 @@ in with self; { JoF = derive2 { name="JoF"; version="0.1.0"; sha256="1my6fc4awrc822ibsvx3hiz4l49vp8dx0j05v56r7d27xizy8j0j"; depends=[]; }; JoSAE = derive2 { name="JoSAE"; version="0.3.0"; sha256="1vjxzbfs8a7kpmn2lb9dca67d4njmzjr3pl16s0r9ihmmxxwwili"; depends=[nlme]; }; JointAI = derive2 { name="JointAI"; version="1.0.5"; sha256="1f1dmdrm8i7la2ydlcpnl0gk1yxdgf9x7s802mgp6hjplcrgzf3q"; depends=[coda future MASS mathjaxr mcmcse rjags rlang survival]; }; - JointFPM = derive2 { name="JointFPM"; version="1.0.1"; sha256="01am0vsc1lqd9p81zlyliadghxlwjkpa11i2ksa7ymv20iyrcyja"; depends=[data_table lifecycle rlang rmutil rstpm2 survival]; }; + JointFPM = derive2 { name="JointFPM"; version="1.1.0"; sha256="19x39mw7m7a05n7yx42h9dvzgcgxx7nk27n0vvdaw0kqfyj5ng8m"; depends=[cli data_table lifecycle rlang rmutil rstpm2 survival]; }; Julia = derive2 { name="Julia"; version="1.3.5"; sha256="0ynzxflz92y38z7bl9g8nhrgvz2ay716izpya398b29h4qfb1w4r"; depends=[]; }; JuliaCall = derive2 { name="JuliaCall"; version="0.17.5"; sha256="036rxp2lygvpxpykpxx2lqyyzidzzi95lv6g30n70hzy0agjym4j"; depends=[knitr Rcpp rjson]; }; - JuliaConnectoR = derive2 { name="JuliaConnectoR"; version="1.1.1"; sha256="0chbax02l1p3qr0skvnxw1b8g7kf6s7sk2f3gj0ddl5kj6ls1p5n"; depends=[]; }; + JuliaConnectoR = derive2 { name="JuliaConnectoR"; version="1.1.3"; sha256="005l0i06whz6q7vx79pr9p6xbc01h9mngdr01gkkwrz78vi9xns9"; depends=[]; }; JustifyAlpha = derive2 { name="JustifyAlpha"; version="0.1.1"; sha256="0bd7sn4sn95kal5q2x1q78fsk1mhakr5fax3z6ny2yda2h266af9"; depends=[BayesFactor ggplot2 pwr qpdf shiny shinydashboard stringr Superpower]; }; KCSKNNShiny = derive2 { name="KCSKNNShiny"; version="0.1.0"; sha256="13gzqf3g7vj8cc0xm5902q7lad2way8d0ri1fs01dnv97wmwbxvn"; depends=[caret dplyr FNN rhandsontable shiny]; }; KCSNBShiny = derive2 { name="KCSNBShiny"; version="0.1.0"; sha256="1lv5r9qyvr3dnvcs00jyam0whv64qmv5vphhijlar1xa1g1llwqr"; depends=[caret dplyr e1071 rhandsontable shiny]; }; @@ -2514,7 +2562,8 @@ in with self; { KFPLS = derive2 { name="KFPLS"; version="1.0"; sha256="1bdba738mhsa6yw515fyaw96pycvflw596fh9dkhhns498lg7356"; depends=[fda]; }; KGode = derive2 { name="KGode"; version="1.0.4"; sha256="0q39x34rwya3pqhvly1g0n2ykzvwrwdpdnp3y3ya9cyai63l2sgn"; depends=[mvtnorm pracma pspline R6]; }; KHQ = derive2 { name="KHQ"; version="0.2.0"; sha256="1vg0p3igbw81fbp2gli9msqbvymbn0qf3g3y0nb3q51d7wfax0qd"; depends=[magrittr openxlsx]; }; - KLINK = derive2 { name="KLINK"; version="0.6.1"; sha256="0l0l9rncj0lqwmf0w7aisilqvj721gwx0lb5wh1ailxlznd6kp06"; depends=[forrel gt openxlsx pedmut pedprobr pedtools pkgload shiny shinydashboard verbalisr]; }; + KINSIMU = derive2 { name="KINSIMU"; version="0.1.2"; sha256="0chsjpg0irxk7m7hqb7fmv60cdc7fdjmii64pfadjbnmzzzbhbq1"; depends=[]; }; + KLINK = derive2 { name="KLINK"; version="0.7.2"; sha256="03aqpjwb0iqw7papvzx0vz2811rgang1p8sy7zr0qkrlcn7i3fw2"; depends=[forrel gt openxlsx pedFamilias pedmut pedprobr pedtools shiny shinydashboard verbalisr zip]; }; KLexp = derive2 { name="KLexp"; version="1.0.0"; sha256="1knnqzzywh6zcj60133a5bfzqqxmf86gn4m1kggm7gzv1k9mx90b"; depends=[glmnet]; }; KMD = derive2 { name="KMD"; version="0.1.0"; sha256="0sgcfh5b4dl1gy3dxsdsqgmyfrd6kqrzvxv9g4slskwyrjsirsp5"; depends=[boot data_table igraph mlpack proxy RANN]; }; KMsurv = derive2 { name="KMsurv"; version="0.1-5"; sha256="0hi5vvk584rl70gbrr75w9hc775xmbxnaig0dd6hlpi4071pnqjm"; depends=[]; }; @@ -2550,12 +2599,12 @@ in with self; { KinMixLite = derive2 { name="KinMixLite"; version="2.1.0"; sha256="17kjb12r35b42ghkv6mp0jk115gn2dlwc8cdf92cm9jjn4k9am9a"; depends=[DNAmixturesLite gRaven gRbase Matrix numDeriv pedtools ribd Rsolnp statnet_common]; }; KingCountyHouses = derive2 { name="KingCountyHouses"; version="0.1.0"; sha256="17l415v290lm99rsifpk6324mm1sk79ns4cvjkyh9ibj8n7l44c1"; depends=[]; }; Kira = derive2 { name="Kira"; version="1.0.1"; sha256="1hs782is31j4d19737lwdqaxdvprws9lv0x4v3wn07pcsais5wki"; depends=[MASS]; }; - Kmedians = derive2 { name="Kmedians"; version="1.2.0"; sha256="10akh0jbnk7hrgqp414p66ddlhs6rdgd1ifjx18wpnfn4c81xcnj"; depends=[capushe doParallel foreach genieclust ggplot2 Gmedian mvtnorm reshape2]; }; + Kmedians = derive2 { name="Kmedians"; version="2.2.0"; sha256="0bsbwxv0a9b6g89h7v876hm5p97viwbczz851ngjv5li5qzvlpxs"; depends=[capushe doParallel foreach genieclust ggplot2 Gmedian mvtnorm reshape2]; }; KnapsackSampling = derive2 { name="KnapsackSampling"; version="0.1.0"; sha256="17yzmd11k1n5iy54vbcvpzvkm8ypbl6n1kfi931wwrrcq9y7hg22"; depends=[lpSolve]; }; KneeArrower = derive2 { name="KneeArrower"; version="1.0.0"; sha256="1blmim4l7375psa9c3wbpksywj5nfbawly4001n6311wcv4dybl5"; depends=[signal]; }; KnockoffHybrid = derive2 { name="KnockoffHybrid"; version="1.0.0"; sha256="0fzymcyb40v3bgd39a6nfxf4wrs171k655rx779q3vxb75nlnlnb"; depends=[glmnet SPAtest]; }; KnockoffScreen = derive2 { name="KnockoffScreen"; version="0.3.0"; sha256="01r04d9ha9l5pkz3lwdcb5x5qqwk8vil9avnbnfn76wg63mdfhbk"; depends=[bigmemory CompQuadForm data_table irlba Matrix seqminer SPAtest]; }; - KnockoffTrio = derive2 { name="KnockoffTrio"; version="1.0.1"; sha256="1xm7hx6c8w305wk4qc6w3awc6pykn7b5v5lakpv9rkikn4c7rkrf"; depends=[]; }; + KnockoffTrio = derive2 { name="KnockoffTrio"; version="1.0.2"; sha256="198sy0ww4cc59yqgf66vg6r5g52wmgpn51v43cm51b3pi7g7klar"; depends=[]; }; KnowBR = derive2 { name="KnowBR"; version="2.2"; sha256="1w78rmrh4vgvgv3xf0s7w0zcw3y33l1h1gz6sma87xj8awpsp2l2"; depends=[fossil mgcv plotrix sp vegan]; }; KoboconnectR = derive2 { name="KoboconnectR"; version="1.2.1"; sha256="0mb539y80apxzzvfpgq4yj8vcjqnamkszn37p8bibr1yvfzdzy1j"; depends=[curl dplyr httr jsonlite mime openssl purrr R6 readxl rlang]; }; KoulMde = derive2 { name="KoulMde"; version="3.2.1"; sha256="0yx04my2vwjpi4l35h1i5xwqckca8b72divww39y1frcvia33g08"; depends=[expm Rcpp RcppArmadillo]; }; @@ -2564,6 +2613,7 @@ in with self; { KrigInv = derive2 { name="KrigInv"; version="1.4.2"; sha256="01i953b0xrqrwbgzv8giz4dmcbc18jni9whhkmpg8sxvhqac59ns"; depends=[anMC DiceKriging mvtnorm pbivnorm randtoolbox rgenoud]; }; Kurt = derive2 { name="Kurt"; version="1.1"; sha256="0fmd3m6pgsyf614wf11yclxl9zsac5jrffci5c2514wvs1slqw1p"; depends=[expm labstatR matrixcalc polynom]; }; L0Learn = derive2 { name="L0Learn"; version="2.1.0"; sha256="050r2rqmqgwmal53d82vi0nhnzzrm4q8mqz0pbpj77blflbqy740"; depends=[ggplot2 MASS Matrix Rcpp RcppArmadillo reshape2]; }; + L1centrality = derive2 { name="L1centrality"; version="0.0.3"; sha256="1cg80g5s4hmjk6qrhf55mw33cr91agj5shr938jigp59nc3rcr7s"; depends=[igraph Rcpp withr]; }; L1pack = derive2 { name="L1pack"; version="0.41-24"; sha256="1zbiiawvm1jfmsab7kxz2rr969xbz2nxxx4piadp5s5ln8v4jxil"; depends=[fastmatrix]; }; L2DensityGoFtest = derive2 { name="L2DensityGoFtest"; version="0.6.0"; sha256="1fzfqfq77rf4hfrh1idb2nb67mwk9lwypxhr2qc1hiidvk060lq0"; depends=[boot fGarch mvtnorm nor1mix]; }; L2E = derive2 { name="L2E"; version="2.0"; sha256="1ar8jmi7nddp6f5rfh8zvh8w8zkigdf1zjzdr5fz8zqj2ny5hy30"; depends=[cobs isotone Matrix ncvreg osqp robustbase signal]; }; @@ -2571,11 +2621,12 @@ in with self; { LA = derive2 { name="LA"; version="2.2"; sha256="12fhkrjcj5304pdpgmf8iilxgy5vnixqj3zb87csa4m22ibpkah4"; depends=[Rcpp RcppArmadillo]; }; LAD = derive2 { name="LAD"; version="0.1.0"; sha256="0qms5w9fx0hqjiq2wirckay6x9v0h99h6dhahfkba4vcfa8vxnkx"; depends=[cowplot dplyr ggplot2 magrittr purrr rlang tidyr tidyselect]; }; LAGOSNE = derive2 { name="LAGOSNE"; version="2.0.3"; sha256="03x2ghcpl1ibpic4msb1n3n8fqbxjnv357phlb2a7y5lmy4fb1ny"; depends=[curl dplyr httr lazyeval magrittr memoise progress purrr qs rappdirs rlang sf stringr tibble tidyr]; }; - LAIr = derive2 { name="LAIr"; version="0.1.0"; sha256="166j095mmqsbcxpyljp18khbrcqnjml1m2sdcjdxycih0s6wycry"; depends=[dplyr purrr stringr terra]; }; + LAIr = derive2 { name="LAIr"; version="0.2.0"; sha256="1fd4mfr3xxg6dr8qs9959mg6s97jg7k3qmg5axv1kkk8abda9l5x"; depends=[dplyr purrr stringr terra]; }; LAM = derive2 { name="LAM"; version="0.6-19"; sha256="1bns8m48rlkv1d87wvhlvkplr8kpm2rda5wb9xcvjqr7bf65nk8b"; depends=[CDM Rcpp RcppArmadillo sirt]; }; LARF = derive2 { name="LARF"; version="1.4"; sha256="1sqib7smgjacn07ishwls1nlbvcb6fpp1vhrjwf9g4xf9jk30i8h"; depends=[Formula]; }; LARisk = derive2 { name="LARisk"; version="1.0.0"; sha256="13d008v8aypqlx35bf16y7rcfcv5qnbsi8q0zpfcl03rzxmqpb8b"; depends=[dplyr Rcpp]; }; LAWBL = derive2 { name="LAWBL"; version="1.5.0"; sha256="0vqjp00nviyl6ghbjn2ayj3k0x2a7hihff0w0x7xwqv3z8x0mh8g"; depends=[coda MASS]; }; + LBI = derive2 { name="LBI"; version="0.1.0"; sha256="03s4l90ffwfg4516m1bsyyylzwv1pbaq19xvkyprkzz1mjwmkxqj"; depends=[]; }; LBPG = derive2 { name="LBPG"; version="0.1.2"; sha256="01sky2388ylx960vd5lnj48an2n82fd909cnm11v91kklyvkxxlc"; depends=[gsl]; }; LBSPR = derive2 { name="LBSPR"; version="0.1.6"; sha256="075wcjhvp90fj37ihrplnrc0vy8wpav5qivkw1rgv00fa8xj7pw0"; depends=[dplyr ggplot2 gridExtra plotrix RColorBrewer Rcpp shiny tidyr]; }; LCA = derive2 { name="LCA"; version="0.1.1"; sha256="014kih33y8b9nls0pcigw68jbz7vgnq8w1xbwm2d37g1m5y6xlyw"; depends=[]; }; @@ -2584,7 +2635,7 @@ in with self; { LCCR = derive2 { name="LCCR"; version="1.3"; sha256="07hrbras7721rb2q9c8qd9k6cn3ba16i06b30xnyjzq6my1wzpd5"; depends=[MASS]; }; LCF = derive2 { name="LCF"; version="1.7.0"; sha256="1n5gwnkj26b7w6bzapda049bd4aqb317cip05nf0vy04xjc8giyc"; depends=[quadprog]; }; LCFdata = derive2 { name="LCFdata"; version="2.0"; sha256="1x3vbr6hdviqvd6dxn1kb449g0q5zkfmjsmr5nxd2g82p69lv3xm"; depends=[]; }; - LCMCR = derive2 { name="LCMCR"; version="0.4.13"; sha256="07gw8djwm352fmcr78mpqab1w4jpwpwb75cr3ay0nhnadzd9wsfg"; depends=[]; }; + LCMCR = derive2 { name="LCMCR"; version="0.4.14"; sha256="12y12w2cdrfd1pqzlk7i7ddh2jypd0r0qm9l8gdb3jq301zi5lay"; depends=[]; }; LCMSQA = derive2 { name="LCMSQA"; version="1.0.1"; sha256="12h9gnw64q5y0b6a9n3184dj5rdmqv2qsskpazgj9pgb5v3kagsp"; depends=[bslib bsplus data_table DT ggplot2 plotly shiny shinycssloaders shinyjs shinyWidgets]; }; LDABiplots = derive2 { name="LDABiplots"; version="0.1.2"; sha256="0vcc2s0qyib9l7sdflxbfanraxw5hqjlp24v8yg3z9i65y5gzbaw"; depends=[chinese_misc dplyr DT factoextra ggplot2 ggrepel glasso highcharter htmlwidgets ldatuning Matrix qgraph quanteda rvest shiny shinyalert shinyBS shinybusy shinycssloaders shinydashboard shinyjs shinyWidgets SnowballC stringr textmineR textplot tidyr topicmodels]; }; LDAShiny = derive2 { name="LDAShiny"; version="0.9.3"; sha256="0iql2fcg7fkyggdwmb6mhn54vhki6v206mkc5km41fjiqss2b4ni"; depends=[beepr broom chinese_misc dplyr DT highcharter htmlwidgets ldatuning plotly purrr quanteda shiny shinyalert shinyBS shinycssloaders shinydashboard shinyjs shinyWidgets SnowballC stringr textmineR tidyr tidytext tm topicmodels]; }; @@ -2601,7 +2652,7 @@ in with self; { LDlinkR = derive2 { name="LDlinkR"; version="1.3.0"; sha256="0al36cdq7g14fqvxb1c26ih269704f8m0kyky526ravbgf0ydnw1"; depends=[httr]; }; LEANR = derive2 { name="LEANR"; version="1.4.9"; sha256="053xy13ys5hibafdnbkwqdk36hw7dhanp4frfacpfpn5f9nfh95r"; depends=[foreach igraph]; }; LEGIT = derive2 { name="LEGIT"; version="1.4.0"; sha256="1ynzm630c3wl8y9j058qgdkss5ngmmylhdw13032v53pss0vwlx3"; depends=[boot doSNOW foreach formula_tools glmnet Hmisc iterators lme4 pROC RColorBrewer snow]; }; - LFApp = derive2 { name="LFApp"; version="1.3.1"; sha256="1vvlf3bwxkyl9gyzswc4wd201pav1q2hfbhwmiic4j4d8azsd2r8"; depends=[DT EBImage fs ggplot2 mgcv shiny shinyFiles shinyjs shinyMobile shinythemes]; }; + LFApp = derive2 { name="LFApp"; version="1.4"; sha256="1pxblh8v63n2gcsz1wbxv66aylaz2q61zw2w3l3r9z515kgmid77"; depends=[DT EBImage fs ggplot2 mgcv shiny shinyFiles shinyjs shinyMobile shinythemes]; }; LFDR_MLE = derive2 { name="LFDR.MLE"; version="1.0.1"; sha256="0ykcd24w71zxb53nch041g7xh83gmg1ia3sysdpn0yzkhm0w7cdl"; depends=[]; }; LFDR_MME = derive2 { name="LFDR.MME"; version="1.0"; sha256="1ln0s3ki37cz1a7r96xn0zqw42im7fcanmz2vjk5zycshb423y22"; depends=[]; }; LFDREmpiricalBayes = derive2 { name="LFDREmpiricalBayes"; version="1.0"; sha256="1imw3djmbpdyplv9dmdzzirp9imk88j0kcxcyfh8yr9ywgd77x6b"; depends=[matrixStats R6]; }; @@ -2611,16 +2662,16 @@ in with self; { LHD = derive2 { name="LHD"; version="1.3.3"; sha256="0wqjf0wl0l3kq7i030qjzdavsn75jmghjvzk76b9d22fhk356yh8"; depends=[numbers]; }; LIC = derive2 { name="LIC"; version="0.0.2"; sha256="01wqx3mqq0rz4m0zp07ln6d396fz7xcwm37kn8js26ravyhiipdq"; depends=[]; }; LIM = derive2 { name="LIM"; version="1.4.7"; sha256="0d9bgyd0mnag8wds993dsvlbpkhyakydlzwc3nghxzv2n8504hjj"; depends=[diagram limSolve]; }; - LINselect = derive2 { name="LINselect"; version="1.1.4"; sha256="0av5bcg8n92abxfxyc694g5zx4i9j83bvg8p63i155rhid5k9bsp"; depends=[elasticnet gtools MASS mvtnorm pls randomForest]; }; + LINselect = derive2 { name="LINselect"; version="1.1.5"; sha256="0sd2b0wqmf51x7hxpx2mgymsgn1abzwdiaxp66708pg5nskg48ah"; depends=[elasticnet gtools MASS mvtnorm pls randomForest]; }; LIStest = derive2 { name="LIStest"; version="2.1"; sha256="1gk253v3f1jcr4z5ps8nrqf1n7isjhbynxsi9jq729w7h725806a"; depends=[]; }; - LKT = derive2 { name="LKT"; version="1.5.0"; sha256="1hpvg10kj4c8cixpvgyp9wzy7h6fv02y9zf6rbply537lyni2igb"; depends=[cluster crayon data_table glmnet glmnetUtils HDInterval LiblineaR lme4 Matrix pROC SparseM]; }; + LKT = derive2 { name="LKT"; version="1.6.0"; sha256="0a57817ddni9hl916dvs3spsvqpjfnla8dyrl2v8q5y0faqhagml"; depends=[cluster crayon data_table glmnet glmnetUtils HDInterval LiblineaR lme4 Matrix pROC SparseM]; }; LLM = derive2 { name="LLM"; version="1.1.0"; sha256="0kxppzaim7cmjawg5rjih4dsz8adq0asairgq3vx5lyjppb2cybx"; depends=[partykit reghelper RWeka scales stringr survey]; }; LLSR = derive2 { name="LLSR"; version="0.0.3.1"; sha256="0nci8p3gw35a3ifwrq7r2jih718p2iwmmh3495qnh0fk304y7kbi"; depends=[crayon digest dplyr ggplot2 minpack_lm nleqslv openxlsx rootSolve svDialogs svglite]; }; LMD = derive2 { name="LMD"; version="1.0.0"; sha256="0yizv25ssw9a2ydwlabgx6rfksi3bfz6ay4508fz21j18sq49dfy"; depends=[EMD ggplot2 patchwork]; }; LMERConvenienceFunctions = derive2 { name="LMERConvenienceFunctions"; version="3.0"; sha256="0jg889qh5a9wdi01yiw6z7kivs9dzh5dcq39f4zifdpqzglhshzb"; depends=[fields LCFdata lme4 Matrix mgcv]; }; LMMELSM = derive2 { name="LMMELSM"; version="0.2.0"; sha256="0m57hsfpgxch5lmpdxqp720jv18as12drpx1p5x3y4w0navslslz"; depends=[BH Formula loo MASS nlme Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; - LMMsolver = derive2 { name="LMMsolver"; version="1.0.5"; sha256="14ppnj23l7rh71pkw97qcb31las10ra8ydlbpm6s8q18c21lpvm5"; depends=[agridat ggplot2 maps Matrix Rcpp sp spam]; }; - LMMstar = derive2 { name="LMMstar"; version="0.9.0"; sha256="137lvwy2sm7ldi62jmhnlxa788636q35g7i68qnn9v6gnjd7q9v3"; depends=[copula emmeans ggplot2 lava Matrix multcomp nlme numDeriv pbapply rlang sandwich]; }; + LMMsolver = derive2 { name="LMMsolver"; version="1.0.6"; sha256="0507xrzsm2v8rakp9zwdzc250p92xkicy8anp72pryvj11lszqcw"; depends=[agridat ggplot2 maps Matrix Rcpp sf spam]; }; + LMMstar = derive2 { name="LMMstar"; version="1.0.0"; sha256="0r33k7jyi39a13kwly1qyjai5q67vb6kj803f9yrcxw3g15nfbgd"; depends=[copula doParallel emmeans foreach ggplot2 lava Matrix multcomp nlme numDeriv pbapply rlang sandwich scales]; }; LMN = derive2 { name="LMN"; version="1.1.3"; sha256="0qnc74m2g4fl1cb39xmanvv1hwcnk0169xn4h4phlhxgr0313m63"; depends=[Rcpp RcppEigen SuperGauss]; }; LMest = derive2 { name="LMest"; version="3.1.2"; sha256="0a9lch9bylhy5r4v865lwzzz9qqi98na8bfnr5ga8kzy7akbnza0"; depends=[diagram Formula MASS mclust mix MultiLCIRT mvtnorm scatterplot3d]; }; LMfilteR = derive2 { name="LMfilteR"; version="0.1.3.1"; sha256="1ncx8kqnh43zxffy7rba1xjb3ar3qi1rzmnwpl6vldijajmnjrv8"; depends=[MASS]; }; @@ -2630,7 +2681,7 @@ in with self; { LOCUS = derive2 { name="LOCUS"; version="1.0"; sha256="16hfgj7ilwqlywy3xhfag4fwrbbfqvlmwi55chskc8s2km997pdb"; depends=[far ica MASS]; }; LOGAN = derive2 { name="LOGAN"; version="1.0.1"; sha256="0fjcmfzmjgnks6a8x5v7lmqxpswljzrb9b881qjvyy7hi8asx7gy"; depends=[dplyr foreign ggplot2 magrittr modules pander psych rlang stringr]; }; LOGANTree = derive2 { name="LOGANTree"; version="0.1.1"; sha256="0zbll6bb9c3zrmnw8ccknfi6my4pkv0pq4hq742w393nni3dlahq"; depends=[caret caretEnsemble dplyr gbm ggplot2 ROCR rpart_plot tibble]; }; - LOMAR = derive2 { name="LOMAR"; version="0.2.1"; sha256="0i361yz5h1g9bb5xqq9fq2bb3ylwkshnmqrlhijz9fr9ypm2ywh5"; depends=[aws BH data_table dbscan doParallel EBImage ff FNN foreach pracma proxy RANN Rcpp reshape2 transport]; }; + LOMAR = derive2 { name="LOMAR"; version="0.4.0"; sha256="148n4fmz3j0i042kc6jmf839ylsgxapfx9zx8999mlg77scwmdzi"; depends=[alphashape3d aws BH data_table dbscan doParallel EBImage ff FNN foreach mclust pracma proxy RANN Rcpp reshape2 rhdf5 transport]; }; LOPART = derive2 { name="LOPART"; version="2020.6.29"; sha256="1zxaag5pj3l9rzxhlrkx8q4adlap7wsdysb4y6ijvsmxvv63j22k"; depends=[data_table Rcpp]; }; LOST = derive2 { name="LOST"; version="2.0.2"; sha256="15ggmvjy2k4j692y9h3anfzmb0hgnx66cbr76grwvcfysdx87ick"; depends=[e1071 gdata geomorph MASS miscTools pcaMethods rgl shapes]; }; LPBkg = derive2 { name="LPBkg"; version="1.2"; sha256="1pgv6cb7m2j7qnrzybnv6x67a3ry8kpvisqj86rvxzclc9q56fdn"; depends=[Hmisc orthopolynom polynom]; }; @@ -2647,12 +2698,11 @@ in with self; { LPsmooth = derive2 { name="LPsmooth"; version="0.1.3"; sha256="0fvn6vwfl37xhzzj44vadk8fr3d85zv58jjg7qfdjqvyw8khd59p"; depends=[Hmisc LPBkg LPGraph nloptr orthopolynom polynom truncnorm]; }; LREP = derive2 { name="LREP"; version="0.1.1"; sha256="1dh6f12zvm8ff7vkl118bygyly68rdw6bqf2isjd01ji7d4w70cj"; depends=[]; }; LRMF3 = derive2 { name="LRMF3"; version="0.1.0"; sha256="0j9hnin3yic118766if6gysq0g4mkqw40b0873g4ggjkgxndxrqn"; depends=[glue Matrix]; }; - LRQMM = derive2 { name="LRQMM"; version="1.2.3"; sha256="149z6wggyz9p39vanw5m2iw5v69spxdj8ciarrswj5ddvkli7940"; depends=[GeneticsPed kinship2 Matrix MCMCglmm quantreg R_matlab rsvd SparseM sparsesvd]; }; LRTesteR = derive2 { name="LRTesteR"; version="1.1.1"; sha256="00p9mnlnj2md14c7vhhfs6bq0f2dwhb7r4dxjv6d1b62vfr2v4iv"; depends=[rlang statmod]; }; LRcontrast = derive2 { name="LRcontrast"; version="1.0"; sha256="0fs06p853r42nws2camvs87py39hb1ssxhfm6d5n9kkq81snfx4q"; depends=[DoseFinding]; }; LS2W = derive2 { name="LS2W"; version="1.3.6"; sha256="0qsrf9x45z0waiv10fh0a8rw0zyr5raj6l832yhq76vd9gjfpn9i"; depends=[MASS wavethresh]; }; LS2Wstat = derive2 { name="LS2Wstat"; version="2.1-5"; sha256="194mqp5v0hm1h97f6d5zdj5526329r55pjf9a4azrv5cmcnmwgjv"; depends=[LS2W matrixStats spdep]; }; - LSAfun = derive2 { name="LSAfun"; version="0.6.3"; sha256="1jsn3la2qfnvb5z2abx567zp8wrz5122ifgfzibw6fag6s3kl9ym"; depends=[lsa rgl]; }; + LSAfun = derive2 { name="LSAfun"; version="0.7.1"; sha256="1mnma1mq199vl1japv68s1prfwpi85mlfkibrrjl6abkw80cf5bn"; depends=[lsa rgl]; }; LSAmitR = derive2 { name="LSAmitR"; version="1.0-3"; sha256="1c2i9wy72v9923ngkipwmc49nc6r3znibadgffzkhci583ib55ym"; depends=[Hmisc lme4]; }; LSD = derive2 { name="LSD"; version="4.1-0"; sha256="17pbdlcbhzf3v7l42mjikln1ga5xjp5r78gjg6a88iahk0lwwlvm"; depends=[]; }; LSDinterface = derive2 { name="LSDinterface"; version="1.2.1"; sha256="0zp7bgdbcah6hsfqbz7lq6f7g8xcqhjsr7pjpwjf9brnmy0l7xki"; depends=[abind boot TSdist]; }; @@ -2666,13 +2716,13 @@ in with self; { LSTS = derive2 { name="LSTS"; version="2.1"; sha256="0pxcw5awm6fr6v1n8gd7yap0y1mba9khwgq27qlv9h2kmrzbr3hp"; depends=[ggplot2 patchwork Rdpack scales]; }; LSVAR = derive2 { name="LSVAR"; version="1.2"; sha256="0lhx9a5l3s2c5isd3fhvxxfdazdxddpkg07hk4rckvhmxln7j1dj"; depends=[igraph mvtnorm pracma]; }; LSWPlib = derive2 { name="LSWPlib"; version="0.1.0"; sha256="1z4lcpmbm3wdzbi04flvspkimk4jfhjqi5pd0ab4pbb0ii1z26hs"; depends=[waveslim wavethresh]; }; - LSX = derive2 { name="LSX"; version="1.3.1"; sha256="043w10fm0dbafckjbb08h9zp30fm2q45ifz0b4w7jzzv6a6ngxmp"; depends=[digest ggplot2 ggrepel irlba locfit Matrix proxyC quanteda quanteda_textstats reshape2 rsparse RSpectra rsvd stringi]; }; + LSX = derive2 { name="LSX"; version="1.3.2"; sha256="149l9sbpphw89jg5sbk7szn6xrfscyql0qc5kmf91n2l18kz5w5z"; depends=[digest ggplot2 ggrepel irlba locfit Matrix proxyC quanteda quanteda_textstats reshape2 rsparse RSpectra rsvd stringi]; }; LTAR = derive2 { name="LTAR"; version="0.1.0"; sha256="0jn0fym0v6j9c7pam1samafph9fiqrdr141n3mqj9xks0vaqrqqh"; depends=[gsignal rTensor rTensor2 vars]; }; LTASR = derive2 { name="LTASR"; version="0.1.2"; sha256="1cq00w9pg4mmgsg7ydm9azr0f9hgxa7vskpfrmh90j6xixqmpn4c"; depends=[dplyr knitr lubridate magrittr purrr readr rlang stringr tidyr XML zoo]; }; LTPDvar = derive2 { name="LTPDvar"; version="1.2.1"; sha256="0sdsdx71mpian7gfw7brkzyjjr7bai7dsdifwnib3jpq9p7w7n84"; depends=[]; }; - LTRCforests = derive2 { name="LTRCforests"; version="0.6.5"; sha256="0mrl70pgkihxa62g5fldszy6hwqc4vkg3mwxqhh4cin9h0930zxd"; depends=[ipred partykit prodlim survival]; }; + LTRCforests = derive2 { name="LTRCforests"; version="0.7.0"; sha256="13ypp0fyca536bs8mlg1a3f4zp03788vg7g3yyh1xy2r0q66xb4g"; depends=[ipred partykit prodlim survival]; }; LTRCtrees = derive2 { name="LTRCtrees"; version="1.1.1"; sha256="1k16m2fpwn8m4dvm1b82srf3bgkvkwf6kcjpwjgkdappifc7p5m8"; depends=[icenReg Icens interval inum partykit rpart survival]; }; - LUCIDus = derive2 { name="LUCIDus"; version="2.2.1"; sha256="00qzx94hwkhm5yszkx1wkj592img5n504ybld272x0wps2bk6snp"; depends=[boot glasso glmnet jsonlite mclust mix networkD3 nnet progress]; }; + LUCIDus = derive2 { name="LUCIDus"; version="3.0.1"; sha256="0y8l82q5qzc9k88cc7afqnlixrnfamm58j2fxz22x37yxaad20j1"; depends=[boot glasso glmnet jsonlite mclust networkD3 nnet progress]; }; LVGP = derive2 { name="LVGP"; version="2.1.5"; sha256="03sd777s16nv04ikn9b3rj67ad6n4bwi0rycc7wqdnq0dx6xgniy"; depends=[lhs randtoolbox]; }; LW1949 = derive2 { name="LW1949"; version="1.1.0"; sha256="147ymp7j98ihp1dcz3p5v9ar6h767phjdnga5q5vf1wwa2mxawg7"; depends=[MASS mgcv plotrix]; }; LWFBrook90R = derive2 { name="LWFBrook90R"; version="0.5.3"; sha256="10fr3p6lgym5dlz92867yq1drv2ygx4nq8zkap5756khv0drf8za"; depends=[data_table doFuture foreach future iterators parallelly progressr vegperiod]; }; @@ -2681,13 +2731,13 @@ in with self; { LabApplStat = derive2 { name="LabApplStat"; version="1.4.4"; sha256="0wiyfrk5dfd2djgg461qxhk7zrpwhiagkjcr36w7fbrgibbnmm54"; depends=[emmeans ggplot2 ggraph vctrs]; }; LabRS = derive2 { name="LabRS"; version="0.1.0"; sha256="1a9qafimia83qldsif5wfqx273mvqbx22p5i0hg8n4jvj4vzpy2w"; depends=[knitr]; }; LabourMarketAreas = derive2 { name="LabourMarketAreas"; version="3.4"; sha256="0cifbfijrb80q8xsj7jc6klv78k7sf820d2g5ag2i1lk1vxahwc4"; depends=[data_table sf sp spdep tmap]; }; + LadderFuelsR = derive2 { name="LadderFuelsR"; version="0.0.1"; sha256="0glfyli1cmby4dvl28v558fscrc3ymykqzafy0rr7h10pvkfmp2f"; depends=[dplyr gdata ggplot2 magrittr segmented stringr tibble tidyr tidyselect]; }; LagSequential = derive2 { name="LagSequential"; version="0.1.1"; sha256="1i8h4acfx21r0kxbg4i0k48kvhwy2abri191wp4b22amhz4vqyyd"; depends=[]; }; Lahman = derive2 { name="Lahman"; version="11.0-0"; sha256="0jzxk9ykjm4mxwf2adqdy6gbv80569ynkqsrppfn8ag9d5a3k8bv"; depends=[dplyr]; }; LakeMetabolizer = derive2 { name="LakeMetabolizer"; version="1.5.5"; sha256="09j4k5r441jpbxv9x6j9j5mlcl7yh2ydhfy55wx614wdlv862jn9"; depends=[plyr rLakeAnalyzer]; }; - LambertW = derive2 { name="LambertW"; version="0.6.8"; sha256="10lqsz44ndm8pl8z75j35fzd1s313q09rs9bs3lkym8d43k50pha"; depends=[ggplot2 lamW MASS RColorBrewer Rcpp reshape2]; }; + LambertW = derive2 { name="LambertW"; version="0.6.9-1"; sha256="19j6vjhywyzmrf7rsrx5kf0hg8cpk1gn8al24q813jzp0vsv9ljj"; depends=[ggplot2 lamW MASS RColorBrewer Rcpp reshape2]; }; Landmarking = derive2 { name="Landmarking"; version="1.0.0"; sha256="1gkfv1xcjkbh417kv9dkflfg6agvgrd893v8ams25c2pazfmrmnz"; depends=[dplyr ggplot2 mstate nlme pec prodlim riskRegression survival]; }; Langevin = derive2 { name="Langevin"; version="1.3.1"; sha256="0sg3way9hlk875dfwbby59qm5dxwq7d763a0xjgjwaygpwqc83kz"; depends=[Rcpp RcppArmadillo]; }; - LaplaceDeconv = derive2 { name="LaplaceDeconv"; version="1.0.4"; sha256="0n56cmrb536j1vmfizzag1x8wm68c2znpclwbdl8qraqzp8rmffx"; depends=[orthopolynom polynom]; }; LaplacesDemon = derive2 { name="LaplacesDemon"; version="16.1.6"; sha256="1dsfp65cg06f25zjzd5ib4qyn1alfhbhpgyvpcw5n6bszn13idap"; depends=[]; }; LassoBacktracking = derive2 { name="LassoBacktracking"; version="1.1"; sha256="0xd9y11k1wqmmjb8jjws6ivgcr2x6n7ra27d7mpa3adbvyxzj8dl"; depends=[Matrix Rcpp]; }; LassoGEE = derive2 { name="LassoGEE"; version="1.0"; sha256="1zascnl9hihw0gx2ssmdiv8gcp2672kz9vmsp5vrc2wr9cdcdjz3"; depends=[caret MASS mvtnorm PGEE Rcpp RcppArmadillo SimCorMultRes]; }; @@ -2712,10 +2762,11 @@ in with self; { LexisNexisTools = derive2 { name="LexisNexisTools"; version="0.3.7"; sha256="1cap4q1afv8mbbjn1n5n6np7s9rjmw1647n8v5k0knwn4a4hchi1"; depends=[data_table pbapply quanteda quanteda_textstats stringdist stringi tibble]; }; LexisPlotR = derive2 { name="LexisPlotR"; version="0.4.0"; sha256="0vlm8wcaj3755cbxrfb7ybla9znd2cbklw2xwyyn6r9i4c9xsfih"; depends=[dplyr ggplot2 tidyr]; }; LibOPF = derive2 { name="LibOPF"; version="2.6.2"; sha256="0hkgx2al685353slv5yaqkls56bwci8zc1w6xdfzalfdwna2a7hm"; depends=[]; }; - LiblineaR = derive2 { name="LiblineaR"; version="2.10-22"; sha256="1gkp9q99n8cw8s0qamlpjpnlw597fn71dsr05haiyykkqi2l5h5w"; depends=[]; }; + LiblineaR = derive2 { name="LiblineaR"; version="2.10-23"; sha256="0c8sj8gyrfycqi75xxf7fpy5kbffbw3aw3xj34x90sj47vg0sr09"; depends=[]; }; Libra = derive2 { name="Libra"; version="1.7"; sha256="1fdxvjv3pwpvfw3hnff09s89b2lv13v3ds91lyg3yi7am820dyzg"; depends=[nnls]; }; LifeHist = derive2 { name="LifeHist"; version="1.0-1"; sha256="0q6l6rva5kxl8yzqa7ni4sdj6p4c61sdsjx8zhckzxb7xlwg2hh0"; depends=[BB Hmisc optimx]; }; - LifeInsuranceContracts = derive2 { name="LifeInsuranceContracts"; version="0.0.4"; sha256="02mk8n9rpnbbcgsq7j4b7arm28q1cnwwsswbf7cicahqi1gm3m4z"; depends=[abind dplyr kableExtra lubridate MortalityTables objectProperties openxlsx pander R6 rlang rmarkdown scales stringr tidyr]; }; + LifeInsuranceContracts = derive2 { name="LifeInsuranceContracts"; version="0.0.6"; sha256="1i202lzrr496s2kgpzw5zd1lzcl4ng1aymx7paj42vnxv2j5152c"; depends=[LifeInsureR]; }; + LifeInsureR = derive2 { name="LifeInsureR"; version="1.0.0"; sha256="120pf97hp9rp9ncykpk93xxkrmilz74hksjrylh9vdnmmk1dgwbv"; depends=[abind dplyr kableExtra lubridate MortalityTables objectProperties openxlsx pander R6 rlang rmarkdown scales stringr tidyr]; }; LifeTables = derive2 { name="LifeTables"; version="1.0"; sha256="1dyivvi5cjsnbhncj3arkrndadg7v81nzdf6p6mpgqwqvwn5li8x"; depends=[mclust]; }; LifemapR = derive2 { name="LifemapR"; version="1.0.4"; sha256="0mf6xgzvk5gc7n7w26drxf41h235ygkpylrf20gwifi2rz3lbs8k"; depends=[dplyr htmltools jsonlite leaflet leaflet_minicharts purrr rlang shiny]; }; LightningR = derive2 { name="LightningR"; version="1.0.2"; sha256="1va673aw2hgir8ybbjad6dhbs8izs1z4jcikwa7qp3mkv0zqd0vq"; depends=[httr R6 RCurl RJSONIO]; }; @@ -2739,10 +2790,11 @@ in with self; { LoBrA = derive2 { name="LoBrA"; version="1.0"; sha256="0rsxkli6xhjwy058skgij2cf3n1lcjsaw3pd51i55l2bpwlrmci6"; depends=[lawstat nlme qpdf RColorBrewer]; }; LobsterCatch = derive2 { name="LobsterCatch"; version="0.1.0"; sha256="186h2727ii7y2x8wmvx7favrhg4pwv4ijf7zvjg6vh7lnj365cfb"; depends=[]; }; LocKer = derive2 { name="LocKer"; version="1.1"; sha256="034r6215aigb5hdm2a7cs8qw3nikjdjqnqpn1g27p3lxwfp0n3pr"; depends=[fda Matrix psych]; }; + LocaTT = derive2 { name="LocaTT"; version="1.1.1"; sha256="0wbzyw0h6mz5kh9k5x45vffzp6wa76y9qz5s534vvnmgcic2vqnm"; depends=[taxize]; }; LocalControl = derive2 { name="LocalControl"; version="1.1.3"; sha256="0pi5z3i5hmb8nrqg6nyqrd4hx80xjgc5m3ra1z5r8rvjhw4mz0ik"; depends=[cluster gss lattice Rcpp]; }; Lock5Data = derive2 { name="Lock5Data"; version="3.0.0"; sha256="1407vkcdphy5pb4sgy2ms36vjffiwg2l2753gbszm9wv2m0wrnv4"; depends=[]; }; Lock5withR = derive2 { name="Lock5withR"; version="1.2.2"; sha256="10x3i11pb4cig4pgfmw9984na5zjbg7d41y6crakiimf53ihx0c2"; depends=[]; }; - LogConcDEAD = derive2 { name="LogConcDEAD"; version="1.6-8"; sha256="1d20shva9sqdcmij0da61f9vzaz6nnw4dylribc9lsnjm3qf2079"; depends=[MASS mclust mvtnorm]; }; + LogConcDEAD = derive2 { name="LogConcDEAD"; version="1.6-9"; sha256="0m744byjlf5wrpg5pzi4229h3gdzv88bxfr60mgpg9qy4l6r1p2p"; depends=[MASS mclust mvtnorm]; }; LogRegEquiv = derive2 { name="LogRegEquiv"; version="0.1.5"; sha256="1j23w3fmd2swk2mzbmsq7hy878cm7cs1li65srjc9m79az9vgr3h"; depends=[]; }; LogicReg = derive2 { name="LogicReg"; version="1.6.6"; sha256="18xzszw2g4sx08imjwglab0midrchg8z5lr91w0my7ld7vwaxmll"; depends=[survival]; }; LogisticCurveFitting = derive2 { name="LogisticCurveFitting"; version="0.1.0"; sha256="0b564jc3gv6lnzyxmrmbrk9pa8c6v9vbn2q68h9v0d02n58h1kbl"; depends=[]; }; @@ -2760,7 +2812,7 @@ in with self; { LowWAFOMNX = derive2 { name="LowWAFOMNX"; version="1.1.1"; sha256="0f75qsv6pisgvk39yagzfxscnyfsgh63rmhp4gpybpl0pqmjp48x"; depends=[Rcpp RSQLite]; }; LowWAFOMSobol = derive2 { name="LowWAFOMSobol"; version="1.1.1"; sha256="1ym3i2m1am356di9lcp5nfmxq0np3c4bwsv6bbmf7hg02j7dhwi4"; depends=[Rcpp RSQLite]; }; LqG = derive2 { name="LqG"; version="0.1.0"; sha256="08v6qyvg96jn096xvayivywllcja782mg4zi4gcaaq12hhwdhl1m"; depends=[]; }; - Luminescence = derive2 { name="Luminescence"; version="0.9.22"; sha256="1j7wj6mm38dfdjrqsha9qrar2jclcxa6d7mrs7kx495g1pkbgn1y"; depends=[bbmle data_table DEoptim httr lamW matrixStats mclust minpack_lm plotrix Rcpp RcppArmadillo readxl shape XML zoo]; }; + Luminescence = derive2 { name="Luminescence"; version="0.9.23"; sha256="1qjmsi2y2wa0yj0zh36hbfa2939q2865s670vnn9p2nd8iz8wyl5"; depends=[bbmle data_table DEoptim httr interp lamW matrixStats mclust minpack_lm Rcpp RcppArmadillo readxl shape XML zoo]; }; M2SMF = derive2 { name="M2SMF"; version="2.0"; sha256="160qjrb3mxybvr4z6zra6rzf6scyrb9mplw36gqlfxj418ndnmm1"; depends=[dplyr MASS]; }; M2SMJF = derive2 { name="M2SMJF"; version="1.0"; sha256="0v4sg5h3h2pjp996jspv206c8cymjpn1fg38ivaw12s7bmx8j409"; depends=[dplyr MASS]; }; M3JF = derive2 { name="M3JF"; version="0.1.0"; sha256="0sz02cis8xh11fyng44j6al2fkz6ybcabdgg25bbwb3vidf1y197"; depends=[dplyr InterSIM MASS SNFtool]; }; @@ -2769,7 +2821,7 @@ in with self; { MACER = derive2 { name="MACER"; version="0.2.1"; sha256="02qqcaccw671773lp1zva340fd6wqbsx9v0yxy62cbjnyh3k260r"; depends=[ape ggplot2 httr pbapply png rentrez]; }; MACP = derive2 { name="MACP"; version="0.1.0"; sha256="097qqqv0xmkm8cc5a2zr96lnnrkw92nzr3cj4sfnfa6whlpi72fn"; depends=[caret dplyr fmsb ggplot2 Hmisc igraph lsa pROC PRROC stringr tibble tidyr WGCNA zoo]; }; MADPop = derive2 { name="MADPop"; version="1.1.6"; sha256="136x5shddix3qzr841hx5q5qc1cnm63j4d35h3km5ydw3qki9cyd"; depends=[BH Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; - MAGEE = derive2 { name="MAGEE"; version="1.3.1"; sha256="0b7shd8yx1zzv7ry3qd71zazkzpdqjgc5q3n8ql96k64avp4628f"; depends=[CompQuadForm data_table foreach GMMAT MASS Matrix Rcpp RcppArmadillo]; }; + MAGEE = derive2 { name="MAGEE"; version="1.3.2"; sha256="0k4dgbs686rchk26d1cvprf46axc1a6klxx1cajwrdcm1l9j7van"; depends=[CompQuadForm data_table foreach GMMAT MASS Matrix Rcpp RcppArmadillo]; }; MAGNAMWAR = derive2 { name="MAGNAMWAR"; version="2.0.4"; sha256="1asr18byrgy6bkpxpmnkczgr3dam6ymf30lw6izq112krc891bg4"; depends=[ape coxme doParallel dplyr foreach iterators lme4 multcomp plyr qqman seqinr survival]; }; MAINT_Data = derive2 { name="MAINT.Data"; version="2.7.1"; sha256="0hjrz25jg4a6kcap01rjjgfvvmg1padd57wgjxihaxpsm7pb0fq9"; depends=[GGally ggplot2 MASS mclust miscTools pcaPP Rcpp RcppArmadillo robustbase rrcov sn withr]; }; MAKL = derive2 { name="MAKL"; version="1.0.1"; sha256="0xljmnwl8v3y68xmfm5vbycsa5y5yi0p0n207hg7zjvfaf6gbfhj"; depends=[AUC grplasso]; }; @@ -2780,7 +2832,7 @@ in with self; { MANCIE = derive2 { name="MANCIE"; version="1.4"; sha256="0940xl3z5bca6hcnj2bj341l79wajilxlxzmyz3dlgrz0b3bbdmm"; depends=[]; }; MANOVA_RM = derive2 { name="MANOVA.RM"; version="0.5.4"; sha256="03y6qzbh696h282pq8as2zy16y7j95d04qvn3labivd5qygfwfhp"; depends=[data_table ellipse magic MASS Matrix multcomp plotrix plyr]; }; MAP = derive2 { name="MAP"; version="0.1.3"; sha256="19d0m30jh50ibbdgvcvq1vsz5i1vf8qvl0d0nbqklvnndch61jhk"; depends=[flexmix Matrix]; }; - MAPA = derive2 { name="MAPA"; version="2.0.5"; sha256="09szm5ilxfg893smh72yhbv306lwr3cy1jq7pghg0mipha6wgdxp"; depends=[forecast RColorBrewer smooth]; }; + MAPA = derive2 { name="MAPA"; version="2.0.6"; sha256="12mk086yg8sgfc2c213sskv8kr1nyqamhagixs18b1cc99dg43hc"; depends=[forecast RColorBrewer smooth]; }; MAPITR = derive2 { name="MAPITR"; version="1.1.2"; sha256="0vmsdspja4qfs2z14p835g78zggk8h54v25cn268z1hg2p6zxish"; depends=[CompQuadForm doParallel Rcpp RcppArmadillo]; }; MARSANNhybrid = derive2 { name="MARSANNhybrid"; version="0.1.0"; sha256="1xs0gjdjl9c5i1i8ds9s3sq0764267h6gngkbwimfa8miq287idm"; depends=[earth neuralnet]; }; MARSGWR = derive2 { name="MARSGWR"; version="0.1.0"; sha256="1c64xlyy7bw4na3g0sqh9b0grkp3qhmp11cbsb7jv30gjwrkgj9b"; depends=[earth numbers qpdf]; }; @@ -2798,10 +2850,9 @@ in with self; { MAnorm2 = derive2 { name="MAnorm2"; version="1.2.2"; sha256="0bs6x09mm8ln2c7himavm6bskdkxvx7id4dxpg20k4a5hcqpj3ab"; depends=[locfit scales statmod]; }; MB = derive2 { name="MB"; version="0.1.1"; sha256="15ynrx2w5h5m18ws63syp29n8qc9dfk8q0riidskynijz3p7wz7w"; depends=[tibble]; }; MBA = derive2 { name="MBA"; version="0.1-0"; sha256="1bw3a8xcbjmhb3mfzblx8kpj3jiag8c95wm5g6xy52xrql2rj0vq"; depends=[BH]; }; - MBAnalysis = derive2 { name="MBAnalysis"; version="0.1.0"; sha256="1hgx6lgyjbiq6y5cw720mnavll6mfrarwvhsm7pbr25q1d37jmg8"; depends=[ggplot2 ggrepel]; }; + MBAnalysis = derive2 { name="MBAnalysis"; version="2.0.2"; sha256="1b1s7s1qa82y8054f3mdpq7s13lk7dks900li5k0gr7sqfqdg1fz"; depends=[ggplot2 ggrepel]; }; MBC = derive2 { name="MBC"; version="0.10-6"; sha256="1680lnzga21qk5yddrciiaifxkkb9kk744m9fbj0hg5xw6v9dxic"; depends=[energy FNN Matrix]; }; - MBCbook = derive2 { name="MBCbook"; version="0.1.1"; sha256="0jmvgyzrahnxfkwdn86k3ffk0zfbbd34ya4zmlnsmp2m9xds7lgn"; depends=[MASS mclust mvtnorm Rmixmod]; }; - MBESS = derive2 { name="MBESS"; version="4.9.2"; sha256="0cq4z7nx361rcw42jflrrdjbqs2q5973dlvhcr7i2wbkj3gzkwla"; depends=[boot lavaan MASS mnormt nlme OpenMx sem semTools]; }; + MBESS = derive2 { name="MBESS"; version="4.9.3"; sha256="05ph8dwigwn0c4qg8smqhsjijvsvfawbzvm74mqpasi8qifz8nd3"; depends=[boot lavaan MASS mnormt nlme OpenMx sem semTools]; }; MBHdesign = derive2 { name="MBHdesign"; version="2.3.15"; sha256="03v6809drwjwr9xk19pr4n5wnqy5kh3vizfk0mlml3sn40fg3kxj"; depends=[class geometry mgcv mvtnorm randtoolbox terra]; }; MBMethPred = derive2 { name="MBMethPred"; version="0.1.4.2"; sha256="0qpflcydkf2k8a7kqklvp7mskppviqkffkr98rfsklk8iqf8x9c9"; depends=[caret caTools class dplyr e1071 ggplot2 keras MASS pROC randomForest readr reshape2 reticulate rgl Rtsne SNFtool stringr tensorflow xgboost]; }; MBNMAdose = derive2 { name="MBNMAdose"; version="0.4.2"; sha256="1iar3xqj8458nh0lb2nc566zsdglvrvbxb6xz7yd1nny5aqdxdm3"; depends=[checkmate dplyr igraph magrittr R2jags Rdpack reshape2 rjags scales]; }; @@ -2812,6 +2863,7 @@ in with self; { MCARtest = derive2 { name="MCARtest"; version="1.1"; sha256="15by2cs73fpsfcd5jh39yiwbxppydjph04xmm51fd50hmcwb67mr"; depends=[Epi gtools highs lpSolve Matrix rcdd Rcpp Rdpack]; }; MCAvariants = derive2 { name="MCAvariants"; version="2.6.1"; sha256="0hsm60z1xkjda74f1ab3m5d2l9rv5r88ms7fi0bndrys6dd9fzgl"; depends=[ggplot2 ggrepel gridExtra plotly]; }; MCBackscattering = derive2 { name="MCBackscattering"; version="0.1.1"; sha256="0vvcqjrh8psl480s4q2830rzm2bwy9mmvk9kipp72lzln51qnha6"; depends=[]; }; + MCDA = derive2 { name="MCDA"; version="0.1.0"; sha256="060mqk1cyxh2v68dr8533zr4k3wkz2f4k22400xgj40rwgj9a355"; depends=[combinat ggplot2 glpkAPI plyr RColorBrewer Rglpk triangle]; }; MCI = derive2 { name="MCI"; version="1.3.3"; sha256="1wn8lcr5sq3697nsmly6syb9jv7p99ks0fy933ff5rx54x3rf9hz"; depends=[]; }; MCID = derive2 { name="MCID"; version="0.1.0"; sha256="034r4qxbqnl9hhkpv9r79p26lzj5qh0379ya43ynyvbbi8b8z3rl"; depends=[]; }; MCL = derive2 { name="MCL"; version="1.0"; sha256="1w36h4vhd525h57pz6ik3abbsrvxnkcqypl2aj1ijb6wm7nfp4ri"; depends=[expm]; }; @@ -2832,6 +2884,7 @@ in with self; { MCPtests = derive2 { name="MCPtests"; version="1.0.1"; sha256="1lzlvzw60fb0mllbl0dx8s30zigzbl9shjas629syb9yw55ypxa2"; depends=[doParallel foreach SMR writexl xtable]; }; MCS = derive2 { name="MCS"; version="0.1.3"; sha256="1kiz1jq1bm2n8f33nsybp5jfrzzl9xbsi3m9l8818ybmph99xms6"; depends=[]; }; MCSim = derive2 { name="MCSim"; version="1.0"; sha256="1nqry41qa5c02an5fxm3y1g3w1vcqjgsy1an95i3szz1w1ndaj14"; depends=[CircStats MASS]; }; + MCTrend = derive2 { name="MCTrend"; version="1.0.1"; sha256="0nfiwpd7pynl7a3cy1c8g3iwdc6bfay0726c3skz4ifmjlgp0kg2"; depends=[dplyr ggplot2 lmomco magrittr reshape2 trend]; }; MChtest = derive2 { name="MChtest"; version="1.0-3"; sha256="1b3p6ry8gkvyphakn3504ibl2x8dbhx95saild0mj0iwm3sjyspf"; depends=[]; }; MDBED = derive2 { name="MDBED"; version="1.0.0"; sha256="1r3sizb2mqd4pqjy25krwmsjfkr6cl7lkd8db5jn3hgxx3qh6sgc"; depends=[doParallel foreach ggplot2 lattice orthopolynom psych Rdpack]; }; MDEI = derive2 { name="MDEI"; version="1.0"; sha256="1bj9cp73lyj2dzcycf5a196a3d8swblhxs4qwsyc7vmy4pwpxq43"; depends=[MASS ranger Rcpp RcppArmadillo splines2]; }; @@ -2846,13 +2899,14 @@ in with self; { MDimNormn = derive2 { name="MDimNormn"; version="0.8.0"; sha256="080m0irx5v8l45fg9ig5yzcj92s3ah8a9aha288byszli1cchgpn"; depends=[]; }; MDplot = derive2 { name="MDplot"; version="1.0.1"; sha256="1xijh18hrkb807nfkdr7g642aspn5psc8nw29q387jl5hly2w8s9"; depends=[gplots gtools MASS RColorBrewer]; }; MED = derive2 { name="MED"; version="0.1.0"; sha256="0fy0qmxirkdz5kigy2r7l5czjzws0fhjxy13kv1kqh628ldrp109"; depends=[]; }; - MEDseq = derive2 { name="MEDseq"; version="1.4.0"; sha256="0wx56q99h15s4qqpp355vck03gbk9xcwshcal90w64msrr646bfn"; depends=[cluster matrixStats nnet seriation stringdist TraMineR WeightedCluster]; }; + MEDseq = derive2 { name="MEDseq"; version="1.4.1"; sha256="1w4jgy3fxwmk87r8kc4a6rx20salsk06qxxgx2jd3d22rvrj8crd"; depends=[cluster matrixStats nnet seriation stringdist TraMineR WeightedCluster]; }; MEGENA = derive2 { name="MEGENA"; version="1.3.7"; sha256="0cr10pmj1n831scz5kgaq3nkglr3imwgc62cxng2dvdxr9991g21"; depends=[BH cluster doParallel foreach fpc ggplot2 ggraph ggrepel igraph Matrix Rcpp reshape]; }; MEMSS = derive2 { name="MEMSS"; version="0.9-3"; sha256="0fq85jrajfwavq2fvsw2x9hknc57wc253zw2vw970f04khfbragd"; depends=[lme4]; }; MEPDF = derive2 { name="MEPDF"; version="3.0"; sha256="15hbp7g5dsdpvi239jm6jn11fn371ir6la31g0flqkilq6sr1sqd"; depends=[gtools mvtnorm plyr pracma]; }; MERO = derive2 { name="MERO"; version="0.1.2"; sha256="10wz6qrmi612y6whrn3dka606llijp5d1fffh00b1pprx2rcfl8w"; depends=[doParallel foreach ggpubr missForest progress]; }; MESS = derive2 { name="MESS"; version="0.5.12"; sha256="1xyw04glhpgdcc3p96yvm346l62lsq37ml6lv59ap2ksws9pkq21"; depends=[clipr geeM geepack ggformula ggplot2 glmnet kinship2 MASS Matrix mvtnorm Rcpp RcppArmadillo]; }; MEclustnet = derive2 { name="MEclustnet"; version="1.2.2"; sha256="0rs58dafxngk2lkq14cy14ayjwgnz1gmi12jmi4z74sdj0b3h0gw"; depends=[e1071 ellipse latentnet MASS mvtnorm nnet vegan]; }; + MF_beta4 = derive2 { name="MF.beta4"; version="1.0.1"; sha256="0l3qafpavjshfayvz603141ch9s9a4pl3ly1llfkrmm3rmspb261"; depends=[broom devtools dplyr ggplot2 ggpubr lme4 lmerTest patchwork purrr tidyr tidyverse]; }; MFAg = derive2 { name="MFAg"; version="1.9"; sha256="008krza4lhbv641sn0wlf9gl66n8x6c9d8404m76dsgdsr118c1a"; depends=[]; }; MFDFA = derive2 { name="MFDFA"; version="1.1"; sha256="0nr78p6y4jpg1hrl0h7b7hyvwbr61paf85y3f2dx815x5hscmdhy"; depends=[numbers]; }; MFO = derive2 { name="MFO"; version="0.1.0"; sha256="0i8zkdwmngdq21f1rmn1fmgsr525xfzyjd7nxwy8p7fns6hsq31r"; depends=[dplyr ggplot2 magrittr minpack_lm openxlsx readxl stringr tibble tidyr]; }; @@ -2886,6 +2940,7 @@ in with self; { MINTplates = derive2 { name="MINTplates"; version="1.0.1"; sha256="1jj51314p2ni3f3ncpd8gp7pgshhsp97ic123d732sc9xr0h5rnr"; depends=[]; }; MIRES = derive2 { name="MIRES"; version="0.1.0"; sha256="17k6f73qx85klhhn247nr6h7sinpabq9crlc5ag7qm6z7k6mr370"; depends=[BH cubature dirichletprocess Formula HDInterval logspline mvtnorm nlme pracma Rcpp RcppEigen rstan rstantools StanHeaders truncnorm]; }; MIXFIM = derive2 { name="MIXFIM"; version="1.1"; sha256="1xx25b7hfyzynfh3vsqrkriqnqnn173gn8j1vwqmc434c1vy4nx2"; depends=[ggplot2 mvtnorm rstan]; }; + MJMbamlss = derive2 { name="MJMbamlss"; version="0.1.0"; sha256="03alz38375lks1597646cp5xcfc9vivz3bbz7gwniljn2vznrcfq"; depends=[bamlss coda fdapace foreach funData gamm4 Matrix MFPCA mgcv mvtnorm Rcpp RcppEigen refund sparseFLMM statmod zoo]; }; MKLE = derive2 { name="MKLE"; version="1.0.1"; sha256="0149l4ycn8f1v2ndfvl167xj7zb4zyi4wzaz12d9d5q5igavyx5x"; depends=[]; }; MKMeans = derive2 { name="MKMeans"; version="2.1"; sha256="1zhas96xvjyphmrs48k3nza1ayv9nfj0c760ifb57p8yk28m0bfy"; depends=[]; }; MKclass = derive2 { name="MKclass"; version="0.5"; sha256="1f6k00552vs3fql35mxrpqq52a8jw5g253k5a81shc11j9qapg9x"; depends=[]; }; @@ -2907,6 +2962,7 @@ in with self; { MLGdata = derive2 { name="MLGdata"; version="0.1.0"; sha256="0ysvrnx8m903h99wr40zgg1c6d26m9vsh62zjxh8mvndh69ikzid"; depends=[]; }; MLID = derive2 { name="MLID"; version="1.0.1"; sha256="0ygahmcfbydzic5q3h1ppv5b2ks4lh8mcyfqq27ssmn4g1n6hdvp"; depends=[lme4 nlme]; }; MLML2R = derive2 { name="MLML2R"; version="0.3.3"; sha256="1jgk0h3chab831g5nsppgc6p0xplv11j82491iymnxixqfswb08w"; depends=[]; }; + MLMOI = derive2 { name="MLMOI"; version="0.1.2"; sha256="1j85syszcsv0v30dvsq5rsdkaz1yj71hsrk53cw5k3m89229wzk1"; depends=[openxlsx Rdpack Rmpfr]; }; MLModelSelection = derive2 { name="MLModelSelection"; version="1.0"; sha256="1qfy2rfx2nvkwisl9wwllqsq2qhqzsdmrh90z5zn5qs07d0305wn"; depends=[MASS Rcpp RcppArmadillo RcppDist]; }; MLMusingR = derive2 { name="MLMusingR"; version="0.3.0"; sha256="0d05amwsc4zg474676qma20bba8ihq8dmh1md9r3wdqwilhsb4bh"; depends=[broom dplyr generics lme4 magrittr Matrix nlme performance tibble]; }; MLPUGS = derive2 { name="MLPUGS"; version="0.2.0"; sha256="1yda37073g640g1qrkjrwa8hbyq6bjlcw3wpznx0bk5h0639bc0s"; depends=[]; }; @@ -2936,13 +2992,12 @@ in with self; { MNB = derive2 { name="MNB"; version="1.1.0"; sha256="01rq6bczqdbqj7w7aacvwb4zvfzy53pkxfawx5faxk60iwba8bj1"; depends=[flexsurv numDeriv]; }; MNLR = derive2 { name="MNLR"; version="0.1.0"; sha256="0q80232ndp7pkklzqdbga1vf51dmsxaivm4ia4wah32rc2c87fqp"; depends=[caret e1071 nnet rmarkdown shiny]; }; MNLpred = derive2 { name="MNLpred"; version="0.0.8"; sha256="0wb1a3d5s9hrv3sw8g1vyr9w9gmig4sdj3l339cv5cjfca75swns"; depends=[MASS]; }; - MNM = derive2 { name="MNM"; version="1.0-3"; sha256="16b2yrm2kn943vzrr38qhk6qq20a842xv7iiln4is02csijxw2b3"; depends=[ellipse ICS ICSNP SpatialNP]; }; + MNM = derive2 { name="MNM"; version="1.0-4"; sha256="1s5fn1h10swl003pq0sb08i38zh951n4hpw2szf8akw1lawrzxak"; depends=[ellipse ICS ICSNP SpatialNP]; }; MNP = derive2 { name="MNP"; version="3.1-4"; sha256="1mxfw9b3cxs5bjnzdwc7da8fn00iwf9brzdl938d47pdi074a4s9"; depends=[]; }; MNS = derive2 { name="MNS"; version="1.0"; sha256="0if46a6rw0f2d72wnykkaa5z5b1p2c0r43il6cbwbcnnb3zd8acb"; depends=[doParallel glmnet igraph MASS mvtnorm]; }; MOCCA = derive2 { name="MOCCA"; version="1.4"; sha256="0g70s7hnmrp4sm8gx49vsijj54y4amlcy6axc4k37k4c9g4sdics"; depends=[cclust class clue cluster]; }; - MOCHA = derive2 { name="MOCHA"; version="1.0.0"; sha256="0rwdb4a58craah2rcnaz16v4m9a3d0vlkc3vn5bjjkqppgdafcc7"; depends=[AnnotationDbi assertthat BiocGenerics biovizBase BSgenome data_table dplyr ensembldb GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 ggrepel ggridges IRanges magrittr matrixStats MultiAssayExperiment OrganismDbi pbapply plyranges purrr qvalue RaggedExperiment rlang S4Vectors scales stringr SummarizedExperiment tidyr tidyselect wCorr]; }; + MOCHA = derive2 { name="MOCHA"; version="1.0.2"; sha256="1ncl1xvrb5gy9k3z54ymb55vxfnqyix0yq316h8wd5ppl1qq3fk0"; depends=[AnnotationDbi assertthat BiocGenerics biovizBase BSgenome data_table dplyr ensembldb GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 ggrepel ggridges IRanges lifecycle magrittr matrixStats MultiAssayExperiment OrganismDbi pbapply plyranges qvalue RaggedExperiment rlang S4Vectors scales stringr SummarizedExperiment tidyr tidyselect wCorr]; }; MODISTools = derive2 { name="MODISTools"; version="1.1.5"; sha256="1qxkipbrxqfs6wmg8q9ycwzwmp5qg3g2iv55w6cy492lhri3fsqa"; depends=[httr jsonlite memoise sf sp terra]; }; - MODIStsp = derive2 { name="MODIStsp"; version="2.1.0"; sha256="1nlzfshxzbk848xj4cprb6pm4j4jqxmaa2zmb5qsxx7s68mby5ll"; depends=[assertthat bitops data_table gdalUtilities geojsonio httr jsonlite raster sf stringr xml2 xts]; }; MOEADr = derive2 { name="MOEADr"; version="1.1.3"; sha256="19x7km2bpq0srm2lyafg3jcc4khwv077kjsqhhbgkv7r4c7xl6id"; depends=[assertthat FNN]; }; MOFAT = derive2 { name="MOFAT"; version="1.0"; sha256="00b9ss777zr5ysh98yllyicqwgnzccmjf20g7w20zvn2blhs2np0"; depends=[SLHD]; }; MOLHD = derive2 { name="MOLHD"; version="0.2"; sha256="1lrl24x7iig15jwxigvqm3jdwnxkn948sxmywn6zi2b1a5hqz05k"; depends=[arrangements fields]; }; @@ -2965,7 +3020,7 @@ in with self; { MPsychoR = derive2 { name="MPsychoR"; version="0.10-8"; sha256="19gp2pjy8bllk4pbx139vcydnw04nldfqq9q7291vr5krylfjcqv"; depends=[]; }; MQMF = derive2 { name="MQMF"; version="0.1.5"; sha256="1qw5dswq9p4k5rj8dxzr8f1j3mw232jgn18idbhb4inigha3sa5c"; depends=[MASS mvtnorm]; }; MRCE = derive2 { name="MRCE"; version="2.4"; sha256="0j5dhzmn1bpplc5jird966gcg0zjwlajv93r2p0kh48msi5kbaqc"; depends=[glasso]; }; - MRFA = derive2 { name="MRFA"; version="0.4"; sha256="1ivzyp3q2nb6h5mhykina75ak7ajfw62rh23yr4pljma7gmr1hhm"; depends=[fields foreach glmnet grplasso plyr randtoolbox]; }; + MRFA = derive2 { name="MRFA"; version="0.6"; sha256="0j4ij0w0crwcbxhgsnr3pi52lpzlz9s23df5k05w8580p412s3a3"; depends=[fields foreach glmnet grplasso plyr randtoolbox]; }; MRFcov = derive2 { name="MRFcov"; version="1.0.39"; sha256="0vgmm9lwkpfahzlhcyaixh2x9d85rrpxipzsc0wy66j43vgn4jhp"; depends=[caret dplyr ggplot2 glmnet gridExtra igraph magrittr MASS Matrix mgcv pbapply plyr purrr reshape2 sfsmisc]; }; MRHawkes = derive2 { name="MRHawkes"; version="1.0"; sha256="0qhwm708jijv1w6iml18bg7fc2igdcmydwpb9dzpa4gwwads8b78"; depends=[IHSEP]; }; MRMCaov = derive2 { name="MRMCaov"; version="0.3.0"; sha256="0nq4i1ymv3ifp39liz99l51605q2iiin75a02wp9pyaxf6k7b5hd"; depends=[ggplot2 mvtnorm progress tibble trust]; }; @@ -2973,19 +3028,20 @@ in with self; { MRPC = derive2 { name="MRPC"; version="3.1.0"; sha256="1hsrcqp4yygz2psxj9m2n1z7pivdf82b3rnqc34ripyql5apmikn"; depends=[bnlearn compositions dynamicTreeCut fastcluster GGally graph gtools Hmisc mice network pcalg plyr psych Rgraphviz sna WGCNA]; }; MRQoL = derive2 { name="MRQoL"; version="1.0"; sha256="0isn4g3jpz7wm99ymrshl6zgkb7iancdzdxl2w98n8fbxsh5z6sw"; depends=[]; }; MRReg = derive2 { name="MRReg"; version="0.1.5"; sha256="0705hc85hhk7nd4ygvkswz7drdgia86v6svk85vqa5p899bsam14"; depends=[caret igraph]; }; - MRS = derive2 { name="MRS"; version="1.2.4"; sha256="1sksg70zb72ys1b7vi8amjaqarmdh8vf2l1rb0rasrlvrip3z3br"; depends=[igraph Rcpp RcppArmadillo]; }; + MRS = derive2 { name="MRS"; version="1.2.6"; sha256="0rw3gmjn35118f1v1i8wa56zmz0cz2qbjahic87ylbyamnfsxz3l"; depends=[igraph Rcpp RcppArmadillo]; }; MRTAnalysis = derive2 { name="MRTAnalysis"; version="0.1.2"; sha256="19s30k2crlnracwld0c1dhkvnwfyb32bhr06w7mbxm748lwhkwdh"; depends=[geepack rootSolve sandwich]; }; MRTSampleSize = derive2 { name="MRTSampleSize"; version="0.3.0"; sha256="03c6jkanff241rcv1yixvmlnya3sd8hqpawf9dx9mpsri4pp6mdk"; depends=[]; }; - MRTSampleSizeBinary = derive2 { name="MRTSampleSizeBinary"; version="0.1.1"; sha256="01kg6frglrhi55px2hsadjn9dbfz61hwj1q2m6jrm59b4cws0gcb"; depends=[dplyr ggplot2 Matrix]; }; + MRTSampleSizeBinary = derive2 { name="MRTSampleSizeBinary"; version="0.1.2"; sha256="1kb88sdhb8pp4mmvz8fy08drslzxj58fh1ycqaa3da6j7s9x65bn"; depends=[ggplot2 Matrix]; }; MRZero = derive2 { name="MRZero"; version="0.1.0"; sha256="1ksmhpycslkilm1ixhdi0asa5la5mrql48ycbf1camk556mcl3wa"; depends=[ggplot2 glmnet knitr plotly quantreg rmarkdown robustbase]; }; MRmediation = derive2 { name="MRmediation"; version="1.0.1"; sha256="0v0kn6x4fwj35imj1fb2f2024ifb7081z4cwlhjmdxhabcy6xbx7"; depends=[fda MASS]; }; - MSCMT = derive2 { name="MSCMT"; version="1.3.7"; sha256="1h9g6n7wjh8zx7y1lj7inkn9hz5jbf8q5lhf13m2r9qlw122rlri"; depends=[ggplot2 lpSolve lpSolveAPI Rdpack Rglpk]; }; - MSCquartets = derive2 { name="MSCquartets"; version="1.3.1"; sha256="1nma7x0qz2i2xkp2ggya6hqpdg967hcdpk6s8cjlgm5nmjz7ndcs"; depends=[ape doParallel foreach phangorn Rcpp Rdpack zipfR]; }; + MSCMT = derive2 { name="MSCMT"; version="1.3.9"; sha256="151ql3vxy6vmviv3fr6ln9p68l6sw6dx6qkwn702512z7730wh3a"; depends=[ggplot2 lpSolve lpSolveAPI Rdpack Rglpk]; }; + MSCquartets = derive2 { name="MSCquartets"; version="1.3.2"; sha256="1lgj188xxccq2nwcci2j0ih6p839v6xzwhgc5mvc7k1xz0r1d2q5"; depends=[ape doParallel foreach phangorn Rcpp Rdpack zipfR]; }; MSCsimtester = derive2 { name="MSCsimtester"; version="1.0.0"; sha256="0k04fdprwa56vm6n372lipybgq1plhmjbxvp58wqmpgzpnhcxkvd"; depends=[ape kSamples Rdpack]; }; MSEtool = derive2 { name="MSEtool"; version="3.7.0"; sha256="1zs7n6yvk6fj25w8srhn5359qk9lr7d7ms1pzzvg2i6w78wfw32c"; depends=[abind dplyr ggplot2 ggrepel gridExtra Rcpp RcppArmadillo snowfall]; }; MSG = derive2 { name="MSG"; version="0.8"; sha256="178209p30fmh3c03w8iakz306h2xswcj4ffxg1s9s8md156rbj7s"; depends=[RColorBrewer]; }; MSGARCH = derive2 { name="MSGARCH"; version="2.51"; sha256="1n8v9017p8iw9mai3yqh294v7kyj458a6vj9ma20gzd94nhyhlxh"; depends=[coda expm fanplot MASS numDeriv Rcpp RcppArmadillo zoo]; }; MSGARCHelm = derive2 { name="MSGARCHelm"; version="0.1.0"; sha256="172xpvs98b9ay44ffb8bp9k4zsjzhy92pp7bv3d1j186pqhl13ib"; depends=[forecast MSGARCH nnfor]; }; + MSML = derive2 { name="MSML"; version="1.0.0.0"; sha256="0ha0pzfcasyx5bgjcsz1gnkim6b5mh4wc874dc74q2czhcz1h44k"; depends=[r2redux R2ROC]; }; MSMwRA = derive2 { name="MSMwRA"; version="1.5"; sha256="062d37h47p3sx65k5jh8n900dfzm1mvi18ikral3ajdhy7x2cif9"; depends=[]; }; MSPRT = derive2 { name="MSPRT"; version="3.0"; sha256="0fvikvnf3fa4ski9idg8llxx33bgkrfj5sgkjn0d1dz30kgcx2w2"; depends=[doParallel foreach ggplot2 ggpubr iterators nleqslv]; }; MSQC = derive2 { name="MSQC"; version="1.1.0"; sha256="1irs750n38513si9gw2fs9xibmlw0g3yd9w3rfcj7gbbgp2l6p4f"; depends=[rgl]; }; @@ -2997,10 +3053,11 @@ in with self; { MSclust = derive2 { name="MSclust"; version="1.0.3"; sha256="0kb649sg0q7j4my7xx860pxmh6hd1f8h6sxyh49bwv9glvzq4p75"; depends=[cluster GGally ggplot2 gtools Matrix mclust mnormt mvtnorm psych]; }; MScombine = derive2 { name="MScombine"; version="1.4"; sha256="0s3gbf3s5mf00d5mkbqhd9wwnyps7qb4r3zbal8j8nsaspql9nd3"; depends=[plyr]; }; MSiP = derive2 { name="MSiP"; version="1.3.7"; sha256="1n8yl5icd3qkpmx2knxsp4g6jvkbg6hl82jxg9apxkx4nmsvkawz"; depends=[caret dplyr e1071 magrittr mice plyr pROC PRROC ranger tibble tidyr]; }; - MSigSeg = derive2 { name="MSigSeg"; version="0.1.3"; sha256="1wxjhby18sj6ixh0y4cd5v0yrbypd3jlzl069c4bzpazqq03s1jz"; depends=[MASS]; }; + MSigSeg = derive2 { name="MSigSeg"; version="0.2.0"; sha256="0675nkv5lqw3y19i6bcqhc1jc9qjmyf0x01224d098kfwl74lxiw"; depends=[ggplot2 ggpubr MASS]; }; MSoutcomes = derive2 { name="MSoutcomes"; version="0.1.0"; sha256="1xdfk55rvnyi0w52m3yzl05w9isil2xxln8w15009m8l6w3imgas"; depends=[dplyr]; }; MSwM = derive2 { name="MSwM"; version="1.5"; sha256="0ny5apvww1537qhiwb3f8x173rh7mypvgpw0i46dkvn897i0dq36"; depends=[nlme]; }; - MTA = derive2 { name="MTA"; version="0.5.0"; sha256="13h50frxgp0cznw27z797ri8sfv2xxirsw167g51gx3v7np1vc4i"; depends=[igraph sf]; }; + MTA = derive2 { name="MTA"; version="0.6.0"; sha256="0fsn3plw2hh4hbdrzgpjbb7hnfxfxcjz9wgzpn9jy3w910cxv5jj"; depends=[igraph sf]; }; + MTAFT = derive2 { name="MTAFT"; version="0.1.0"; sha256="0fpvfl19dmp4b6mn55xn42n1v5qml18bxfisa7a1xb5nxdflpxr4"; depends=[grpreg]; }; MTAR = derive2 { name="MTAR"; version="0.1.1"; sha256="17r2da1hdvs8qvgar87zdl51jy8w30vczcsi6jrq0rdyi1lld641"; depends=[CompQuadForm MASS Matrix]; }; MTDrh = derive2 { name="MTDrh"; version="0.1.0"; sha256="0ass3b90nr4i0y7v30hk8xhq3hj9bxaxcsr4f8wfi0lnvzfv6aaa"; depends=[]; }; MTE = derive2 { name="MTE"; version="1.2"; sha256="0xh9q302gklx0djkjvmp79n7y8d0sc06mm7lvmva5i6s69jq243f"; depends=[glmnet quantreg rqPen]; }; @@ -3016,11 +3073,11 @@ in with self; { MVN = derive2 { name="MVN"; version="5.9"; sha256="014s07nxq014j5hkbd6iwwqykcw8si5sah57gi3n0wb51sv8ip1k"; depends=[boot car energy MASS moments nortest plyr psych]; }; MVNBayesian = derive2 { name="MVNBayesian"; version="0.0.8-11"; sha256="1iaxyp480v91887cn4w3l74907wvbzs3ay4cjgzd8xk2dp47w8bg"; depends=[mvtnorm plyr]; }; MVNtestchar = derive2 { name="MVNtestchar"; version="1.1.3"; sha256="0w5008zknrl5r7l4dmj2fbm7vvg2f1wynzf38kabns4j7hb1nmxw"; depends=[ggplot2 Hmisc knitr]; }; - MVPBT = derive2 { name="MVPBT"; version="1.1-1"; sha256="15swmaabfrqah97qz1z971h43vi2c1klniqhc21k7by7bqwsf9sy"; depends=[mada MASS metafor mvmeta]; }; + MVPBT = derive2 { name="MVPBT"; version="1.2-1"; sha256="19i8sgmdndvxiars2za605f3lcxw7cy2ff22n2llkpl5196r3mzl"; depends=[mada MASS metafor mvmeta]; }; MVQuickGraphs = derive2 { name="MVQuickGraphs"; version="0.1.2"; sha256="1937w8y866bsn9kn6a98c91akhm9ddc5dr9wqm51lkbjyz1zm0j1"; depends=[plotrix]; }; MVR = derive2 { name="MVR"; version="1.33.0"; sha256="1ygz47a2p5r5axql5zsxvsn25pcqyxz6mpw50zfmzrcqdrfa3bg8"; depends=[statmod]; }; MVT = derive2 { name="MVT"; version="0.3-8"; sha256="0j3xjxrjy72dcdphlwdzfpnmxx0vs3f0jnk3w4vkp7rx01c1wbd3"; depends=[fastmatrix]; }; - MVTests = derive2 { name="MVTests"; version="2.1.1"; sha256="10zybrcwyq37z8pk0ck4bravbrryx705vd7v4mb4c2vavnshxfq3"; depends=[mvtnorm robustbase rrcov]; }; + MVTests = derive2 { name="MVTests"; version="2.2.2"; sha256="02rl7f249cis4jxqpszwmxr9fc483yhrni0rdyiwamv5q5j1bifz"; depends=[mvtnorm robustbase rrcov]; }; MVar = derive2 { name="MVar"; version="2.2.1"; sha256="0jmbgiw1mvdlkc41mxxk4cjknwh161ahai4gdavdcx66x87l754y"; depends=[MASS]; }; MVar_pt = derive2 { name="MVar.pt"; version="2.2.1"; sha256="00p6n91d28bibf24j3rkql1hp85dy9qag9spi98m6a2v5isp10p3"; depends=[MASS]; }; MVisAGe = derive2 { name="MVisAGe"; version="0.2.1"; sha256="1plrzzj7cr2hxk1npadvjnk7sanhilh99l5vrkjjh3l6li2ym09b"; depends=[]; }; @@ -3029,6 +3086,8 @@ in with self; { MaOEA = derive2 { name="MaOEA"; version="0.6.2"; sha256="0s8jvp7821mb6xff8xwnh78mhz4qfrbk4g7sp4dfnm2ii7ah9c6b"; depends=[e1071 gtools lhs MASS nnet nsga2R pracma randtoolbox reticulate stringr]; }; MachineShop = derive2 { name="MachineShop"; version="3.7.0"; sha256="073v778c7zkpxhhdvqc4hiqlgj5ws9490cqpz22bk659f8f63bav"; depends=[abind cli dials foreach ggplot2 kernlab magrittr Matrix nnet party polspline progress recipes rlang rsample Rsolnp survival tibble]; }; MacroZooBenthosWaterA = derive2 { name="MacroZooBenthosWaterA"; version="0.1.0"; sha256="15b90g7nw82dmpfarx5qm159jmrpp915qz26vv3ya6ky4g2kl6ic"; depends=[]; }; + MadanText = derive2 { name="MadanText"; version="0.1.0"; sha256="1sz3mwb74yvj5ijmpm7zdwsgyvhs6rs8fpy1mpw538r5jx4xbzg8"; depends=[dplyr hwordcloud lattice PersianStemmer shiny shinythemes stopwords stringi stringr textmineR tidyr tidytext tm topicmodels udpipe xlsx]; }; + MadanTextNetwork = derive2 { name="MadanTextNetwork"; version="0.1.0"; sha256="0691pwsgbmy2fmvcf6adqgasrdf70n5g0cgy6663wfavkdx5nni2"; depends=[dplyr glue hwordcloud igraph lattice ngram PersianStemmer shiny shinythemes stopwords stringi stringr textmineR tidyr tidytext tm topicmodels udpipe visNetwork xlsx]; }; Maeswrap = derive2 { name="Maeswrap"; version="1.7"; sha256="0cnnr5zq7ax1j7dx7ira7iccqppc6qpdjghjarvdb2zj0lf69yyb"; depends=[geometry lattice rgl stringr]; }; MagmaClustR = derive2 { name="MagmaClustR"; version="1.1.2"; sha256="0nmf3whngm1kz27aazq4pkgw76sw24w33n51ril0dsvsfirfk7dd"; depends=[broom dplyr ggplot2 magrittr mvtnorm plyr purrr Rcpp rlang tibble tidyr tidyselect]; }; MainExistingDatasets = derive2 { name="MainExistingDatasets"; version="1.0.2"; sha256="16g741hzckla6amhwa54bhg3l3700sp43p6mijbb5065qnviw5y9"; depends=[config dplyr DT glue golem htmltools htmlwidgets magrittr openxlsx pkgload processx rlang sf shiny spData tidyr tmap tmaptools]; }; @@ -3043,15 +3102,15 @@ in with self; { ManyTests = derive2 { name="ManyTests"; version="1.2"; sha256="1mi7wvnkcd95126f1h8vl8skn397yd2zqvcswprqar54p161wgyi"; depends=[]; }; Map2NCBI = derive2 { name="Map2NCBI"; version="1.4"; sha256="1ssqnm9g5p0nnhdyp9dqbbsz3hw8jzdwy0rv3csp8fxm0f1bi1kb"; depends=[rentrez]; }; MapGAM = derive2 { name="MapGAM"; version="1.3"; sha256="09y06fzw8ari3c06fiz8cl067c9frvfnc0zi484brb9nqlaq24rw"; depends=[colorspace gam PBSmapping sf sp survival]; }; - MapeBay = derive2 { name="MapeBay"; version="0.1.0"; sha256="1w1lpnm8fd5gmv4ggrlmkaaj45wyx3yclx3fb2mdrp7iyg4rx34c"; depends=[BH broom car dplyr DT heplots highcharter htmltools MANOVA_RM moments MultBiplotR MVN mvnormtest nortest purrr Rcpp RcppEigen RcppParallel reshape rstan rstantools shiny shinycssloaders shinydashboard shinydashboardPlus StanHeaders stringr tibble vegan waiter]; }; Mapinguari = derive2 { name="Mapinguari"; version="2.0.1"; sha256="19srflx5x33xifn56dl1xlzy4hi8gmmv6lgf2ffyyr2y5k8j2lqp"; depends=[dplyr magrittr raster rlang stringr testthat]; }; + MarZIC = derive2 { name="MarZIC"; version="1.0.0"; sha256="16f09s5f95jsafd3s8w01vc9i98nlwm3abrwfdhymaallq4kcban"; depends=[betareg dirmult doParallel foreach mathjaxr NlcOptim pracma Rcpp RcppArmadillo]; }; MareyMap = derive2 { name="MareyMap"; version="1.3.6"; sha256="0zbg72vck9p14zk1924407n5ap84qiisqhbq1vr715sw67fwdcxi"; depends=[]; }; MargCond = derive2 { name="MargCond"; version="1.0.0"; sha256="07qh1lgy8ds11cwlb4rxkl6aiph91zq29sy27b8wwxalycdgjrg8"; depends=[gee lme4 MASS Matrix]; }; MarginalMediation = derive2 { name="MarginalMediation"; version="0.7.2"; sha256="0a19ww8i04z8a4a6hia4myssfam57fdx59mc4n9dzrbyy293ckx2"; depends=[boot cli crayon furniture magrittr purrr rstudioapi stringr tibble]; }; MarketMatching = derive2 { name="MarketMatching"; version="1.2.0"; sha256="075maishssvjrx0jfmxcfiv2rlhnm0c4dnp6ija3bn5z80i6z91m"; depends=[Boom bsts CausalImpact doParallel dplyr dtw foreach ggplot2 iterators reshape2 scales tidyr utf8 zoo]; }; Markovchart = derive2 { name="Markovchart"; version="2.1.5"; sha256="0rvpj7zpcq2jv2sajnlhv36g76r3c3dlr0p1yyi96qi1q653yvjj"; depends=[doParallel foreach ggplot2 metR optimParallel]; }; MarkowitzR = derive2 { name="MarkowitzR"; version="1.0.3"; sha256="18bs6hbj8bhs1var72vd3gkzjjx80f5cyq0a6fm99fmsggw1lmqa"; depends=[gtools matrixcalc]; }; - MassWateR = derive2 { name="MassWateR"; version="2.1.2"; sha256="0r5ngshvsj2bhhpsrzrlarm3fwv2f6zlxbrx83crciqspvkird68"; depends=[curl dplyr flextable ggmap ggplot2 ggrepel ggspatial httr lubridate RColorBrewer readxl rmarkdown sf tibble tidyr units writexl]; }; + MassWateR = derive2 { name="MassWateR"; version="2.1.4"; sha256="0hfjddm19r53hig48sfxkkjqib4ip651q2asfgp3639w4akn8pzx"; depends=[curl dplyr flextable ggplot2 ggrepel ggspatial httr lubridate prettymapr raster RColorBrewer readxl rmarkdown sf tibble tidyr units writexl]; }; Massign = derive2 { name="Massign"; version="1.1.0"; sha256="09i32lsrx40rxrnb9alfipfrkipy4mza5nr4gcpn2a5h86ak9290"; depends=[]; }; MatSkew = derive2 { name="MatSkew"; version="0.1.5"; sha256="019v2b1r0bvw84xs50smjb3jdz7gd2adz5d84xd8zq43lnml96d1"; depends=[]; }; MatTransMix = derive2 { name="MatTransMix"; version="0.1.16"; sha256="1jvxwbs2914hqd5vr9kfwazh9d0vqpw7dhbpjdh3q4rgqk80gwpd"; depends=[mvtnorm]; }; @@ -3059,20 +3118,20 @@ in with self; { MatchLinReg = derive2 { name="MatchLinReg"; version="0.8.1"; sha256="1spkjpm4pviqv52nknhww1vcjc61sgsfsvp0ilpp4srh0ykc8ihh"; depends=[Hmisc Matching]; }; MatchThem = derive2 { name="MatchThem"; version="1.1.0"; sha256="0qbizfvwx5kagkmgj337lrf9s0nz2rdyb5dwag7yqdfza06mnlvi"; depends=[MatchIt mice rlang survey WeightIt]; }; Matching = derive2 { name="Matching"; version="4.10-14"; sha256="1c56yqr6zlbgjjw61c10fwbxxh4i5ng2krny9p6cz7d2bmm2id5z"; depends=[MASS]; }; - Matrix = derive2 { name="Matrix"; version="1.6-1.1"; sha256="1hlcxr38p4ybb67n25cc1ssh2q2r8cj0flc59lid8hclzvqv27ik"; depends=[lattice]; }; + Matrix = derive2 { name="Matrix"; version="1.6-4"; sha256="00dv2xv69fr3c8h5a2qvr31lffamw5kx08q5v8vli3g6xkd7pjkh"; depends=[lattice]; }; MatrixCorrelation = derive2 { name="MatrixCorrelation"; version="0.10.0"; sha256="1na3y1crlj57c1xq9ja3v94cx2dr0myrlx9bxvhhwss3q3r1lgby"; depends=[plotrix pracma progress Rcpp RcppArmadillo RSpectra]; }; MatrixEQTL = derive2 { name="MatrixEQTL"; version="2.3"; sha256="10r6h5bidj44kfbwiml9pkysbikqphfb21ig61qnx0qa12xcl6l8"; depends=[]; }; MatrixExtra = derive2 { name="MatrixExtra"; version="0.1.14"; sha256="09c6f467sbqa65ny9si9acwkwy4kfvhy532vikr4cd16r89xxr01"; depends=[float Matrix Rcpp RhpcBLASctl]; }; MatrixLDA = derive2 { name="MatrixLDA"; version="0.2"; sha256="0fixq35gp0fzmin75sfld2ln0zvnjgzrhk3b5yi7wdqzp99200yy"; depends=[glasso plyr Rcpp RcppArmadillo]; }; MatrixMixtures = derive2 { name="MatrixMixtures"; version="1.0.0"; sha256="0l9f7sicigp88rqi2bn4bmlrb130qvyikn4mlfphcpa16rvk37dq"; depends=[doSNOW foreach snow withr]; }; - MatrixModels = derive2 { name="MatrixModels"; version="0.5-2"; sha256="0ap3mfzb2psjwlksfjzs2ycl5598bllwzx5hfmf9db4yjsydn1hw"; depends=[Matrix]; }; + MatrixModels = derive2 { name="MatrixModels"; version="0.5-3"; sha256="03zjfxjk4l2dl1117slz163w0ky675d23sjfni4d7fdhqq359ny2"; depends=[Matrix]; }; MaxMC = derive2 { name="MaxMC"; version="0.1.1"; sha256="0n6m5h8n3gwmlqq563rpdx4l8ldzl6jx3ga50ygvlnamdj3wjqgm"; depends=[GA GenSA NMOF pso scales]; }; MaxPro = derive2 { name="MaxPro"; version="4.1-2"; sha256="19a2wp93kx1wkbzd5bvljbm1rr96gr14w4fb0ppbgr2y2a4g8i1v"; depends=[nloptr]; }; MaxSkew = derive2 { name="MaxSkew"; version="1.1"; sha256="0x5x0jpvhp189jnmgh6d1h3ya0dicj5qfcrgr2fhp1v8jjhl125m"; depends=[]; }; MaxentVariableSelection = derive2 { name="MaxentVariableSelection"; version="1.0-3"; sha256="1cmxfdkm5k85b4ivlfy5521hkfj0gq2pb1qlxxklh0fprw87kp9c"; depends=[ggplot2 raster]; }; MaximinInfer = derive2 { name="MaximinInfer"; version="2.0.0"; sha256="0l4sglb3f7f1na6dbb4rd73sb4kqzlz78sj09f84rbqghjrzbxl0"; depends=[CVXR glmnet intervals MASS SIHR]; }; - MazamaCoreUtils = derive2 { name="MazamaCoreUtils"; version="0.4.16"; sha256="021wrll07xrx9vk4vv0h7rmh5bll10gyywa5qyvd7sdpnvnrw3l3"; depends=[devtools digest dplyr futile_logger geohashTools lubridate magrittr purrr rlang rvest stringr tibble xml2]; }; - MazamaLocationUtils = derive2 { name="MazamaLocationUtils"; version="0.3.11"; sha256="0xd8c53avwz4dxd2p8lncn20dnq910y3ry9y74i253dl2bwpk347"; depends=[dplyr geodist httr jsonlite leaflet lubridate magrittr MazamaCoreUtils MazamaSpatialUtils readr rlang stringr tidygeocoder]; }; + MazamaCoreUtils = derive2 { name="MazamaCoreUtils"; version="0.5.1"; sha256="0c0z9wbfcr2climkap97bxwqb5qpi6svkjw42gdzq56mgqng3asl"; depends=[devtools digest dplyr futile_logger geohashTools lubridate magrittr purrr rlang rvest stringr tibble xml2]; }; + MazamaLocationUtils = derive2 { name="MazamaLocationUtils"; version="0.4.1"; sha256="0p3brfsbjlpzi2dnvd8iyg9w19hgyj4ipvm5jcabrq0wdb142bli"; depends=[cluster dplyr geodist httr jsonlite leaflet lubridate magrittr MazamaCoreUtils MazamaSpatialUtils readr rlang stringr tidygeocoder]; }; MazamaRollUtils = derive2 { name="MazamaRollUtils"; version="0.1.3"; sha256="1433xy64n3wpxg9d0jlwdfp8hlvmq0ndg3fv6kfxq3pasm600jgc"; depends=[Rcpp]; }; MazamaSpatialPlots = derive2 { name="MazamaSpatialPlots"; version="0.2.0"; sha256="1i8gqywl2w7zjl1m5qw8vmy7wn44cp8fkiw4m2iwvf4s9q43xjnc"; depends=[dplyr magrittr MazamaCoreUtils MazamaSpatialUtils rlang sf tmap]; }; MazamaSpatialUtils = derive2 { name="MazamaSpatialUtils"; version="0.8.6"; sha256="18dpnal2rkj2lkrlnr6wn4rc4n2xb7w6g6kywppc9d1qd29b0njk"; depends=[countrycode dplyr magrittr MazamaCoreUtils rlang rmapshaper sf stringr]; }; @@ -3084,11 +3143,10 @@ in with self; { MediaK = derive2 { name="MediaK"; version="1.0"; sha256="19cmxl2wksw9kvjsfn1m4nkr5gpcx6bk0sqrabj1n0dla1l32v2a"; depends=[Rcpp RcppEigen]; }; Mediana = derive2 { name="Mediana"; version="1.0.8"; sha256="0j1ikc2iaxl70134v0gijj2i2g0xgjafvn8rc108r9fhm8rpw564"; depends=[doParallel doRNG foreach MASS mvtnorm survival]; }; MedianaDesigner = derive2 { name="MedianaDesigner"; version="0.13"; sha256="07vzfm583gqk0ars4gamyn21lpcsdxx86nkp227i9yk7lyj0r6kp"; depends=[devEMF doParallel flextable foreach lme4 lmerTest MASS mvtnorm officer pbkrtest Rcpp RcppEigen RcppNumerical rootSolve shiny shinydashboard shinyMatrix]; }; - Mega2R = derive2 { name="Mega2R"; version="1.0.9"; sha256="1wpn03csv88958ppg4idwidcdvr1gf3bps4c0sf5z3ri78awb28f"; depends=[AnnotationDbi DBI famSKATRC gdsfmt GenomeInfoDb kinship2 pedgene Rcpp RSQLite SKAT]; }; + Mega2R = derive2 { name="Mega2R"; version="1.1.0"; sha256="05g0r7z6kiy0pgl7cbcc3c0wbf4wbc7fxdbha8sc77m3hqya882l"; depends=[AnnotationDbi DBI famSKATRC gdsfmt GenomeInfoDb kinship2 pedgene Rcpp RSQLite SKAT]; }; MendelianRandomization = derive2 { name="MendelianRandomization"; version="0.9.0"; sha256="103pmql4klhvqm7sydbqwqzx2ngbr8dxky8cg495ggpzbpjj131n"; depends=[ggplot2 glmnet iterpc knitr Matrix numDeriv plotly quantreg Rcpp RcppArmadillo rjson rmarkdown robustbase]; }; Mercator = derive2 { name="Mercator"; version="1.1.2"; sha256="1iixn75vp66gbhllppm8xaxxqg8qbp4m5db8qznnysm8gn5wcl7f"; depends=[ClassDiscovery cluster dendextend flexmix igraph KernSmooth kohonen Polychrome Rtsne Thresher umap]; }; Mestim = derive2 { name="Mestim"; version="0.2.1"; sha256="1dl1fx6aqdz584d79nbm4ykgn915d6mr0m48m83pbr3k6q18varg"; depends=[]; }; - MetAlyzer = derive2 { name="MetAlyzer"; version="0.1.0"; sha256="1mqc2037q71n1k7ncym52vn0cc5ndsxq4r87k492lp1b3i7h1wi3"; depends=[agricolae dplyr openxlsx rlang tibble tidyr]; }; MetBrewer = derive2 { name="MetBrewer"; version="0.2.0"; sha256="0x51g5z9cdl043rna9qh4cj16qxahb6ccj9d8rr9d43d860jigp7"; depends=[ggplot2]; }; MetChem = derive2 { name="MetChem"; version="0.4"; sha256="179634a8chsqfrq44il4dpyxrvadwdn1a7zm2h4ywim63w1dj02b"; depends=[fingerprint httr KODAMA rcdk XML]; }; MetGen = derive2 { name="MetGen"; version="0.5"; sha256="00yzaicrpwfnxi5mdzwx1ai721vczkkf2yl50q9wwpxhmfx0xbbh"; depends=[chron glmnet MASS]; }; @@ -3109,15 +3167,16 @@ in with self; { MetabolAnalyze = derive2 { name="MetabolAnalyze"; version="1.3.1"; sha256="070qws759nczjrfdlh7jpbyjz4z3zm1hzb7vcvfgfks82wwb2ny0"; depends=[ellipse gplots gtools mclust mvtnorm]; }; MetabolicSurv = derive2 { name="MetabolicSurv"; version="1.1.2"; sha256="1c8i3a3gnbvlkjh0vqmz1igzaf8q87cb55l3kijwi0z23ywrbqch"; depends=[dplyr ggplot2 glmnet matrixStats pls Rdpack rms superpc survival survminer tidyr]; }; MetabolicSyndrome = derive2 { name="MetabolicSyndrome"; version="0.1.3"; sha256="0hacywgkpsa3j96k4z24j6r3srm22i8vs53010nyakdsczzlizvn"; depends=[dplyr]; }; - MetabolomicsBasics = derive2 { name="MetabolomicsBasics"; version="1.4"; sha256="0d4hfmr6m5dnw4f2374ih5q6av0f0z6vq28cd66zpmyrdvhxp9w0"; depends=[C50 caret e1071 InterpretMSSpectrum mixOmics pcaMethods plyr Rdisop rlang rpart webchem]; }; + MetabolomicsBasics = derive2 { name="MetabolomicsBasics"; version="1.4.3"; sha256="10myw7fc4r9ly4nyi62v5qhfjbjaja6i3v124bv7h8dsd3qdsvzp"; depends=[C50 caret e1071 InterpretMSSpectrum pcaMethods plyr rlang rpart webchem]; }; MetaculR = derive2 { name="MetaculR"; version="0.4.1"; sha256="130ic9q221lmnr5wzmw7bbskqzi5gmw8ark5zpw3y8wy9zbv2m98"; depends=[assertthat clipr cowplot dplyr ggplot2 ggrepel httr jsonlite magrittr progress spatstat_geom tidyr verification]; }; MethComp = derive2 { name="MethComp"; version="1.30.0"; sha256="1vmwb4zw4gm2x0j2nzm2vjfj7x19ws8njr6dcglzjpbbha7nxjp6"; depends=[coda nlme rjags]; }; MethodCompare = derive2 { name="MethodCompare"; version="0.1.2"; sha256="1nxr2fgmfixjkdparavi156qqqchjwaxpjk9i2xgc1yhp1p01pll"; depends=[nlme]; }; - MetricGraph = derive2 { name="MetricGraph"; version="1.1.2"; sha256="05pzhvj3av8lrq77q2c34k0iz0amjzggcf2vzc7apjg5slvg02bf"; depends=[ggplot2 igraph Matrix R6 Rcpp RcppEigen rSPDE sf sp viridis]; }; + MetricGraph = derive2 { name="MetricGraph"; version="1.2.0"; sha256="0zccshl9vlaqgqmdmmicp0lnzhngiarbymf2wq8b49qr35iwgwb3"; depends=[broom dplyr ggplot2 igraph lifecycle magrittr Matrix R6 Rcpp RcppEigen rSPDE sf sp tidyr viridis zoo]; }; Metrics = derive2 { name="Metrics"; version="0.1.4"; sha256="0fh8qbjlwzagh272lgwr4bxcqcjb1qpz53mgs8rzlvncax6nk5bk"; depends=[]; }; - MetricsWeighted = derive2 { name="MetricsWeighted"; version="1.0.2"; sha256="1112j7fyqa1bvmhj8l264kwzigqr6f7s3xb7x2dviyapbhx7nv9l"; depends=[]; }; + MetricsWeighted = derive2 { name="MetricsWeighted"; version="1.0.3"; sha256="084zvfh66daz9g7cwn4bzx3cvydzwf83r2lzy6xga7qd4d89q0j6"; depends=[]; }; MexBrewer = derive2 { name="MexBrewer"; version="0.0.2"; sha256="04r1hylym4pxlxy7ldd185bczd398f8a757a9yy6f86lg4vrqyhq"; depends=[ggplot2]; }; MfUSampler = derive2 { name="MfUSampler"; version="1.1.0"; sha256="0jzql2hs335gd4kwj18yi8ygsi3190wacfs3mgrmshdjb2frkh15"; depends=[ars coda dlm]; }; + Mhorseshoe = derive2 { name="Mhorseshoe"; version="0.1.2"; sha256="0ra7mswvqjm8vma4d1r3piz0wpsm1d4qwf39h99migri4mn2080y"; depends=[Rcpp]; }; MiDA = derive2 { name="MiDA"; version="0.1.2"; sha256="144gxsxqljzskxsw5k0y69ix0pxlfvyyznxkjpf2ng4l47pg11z5"; depends=[caret gbm genefilter limma preprocessCore pROC SQN]; }; MiMIR = derive2 { name="MiMIR"; version="1.4"; sha256="0gy4mp4dc25jzks62rw1w3xwrr4zs4q4cix2mlcmhh807km0g3xf"; depends=[caret dplyr DT foreach fs ggplot2 heatmaply matrixStats plotly pROC purrr shiny shinycssloaders shinydashboard shinyFiles shinyjs shinyWidgets survival survminer]; }; MiRKAT = derive2 { name="MiRKAT"; version="1.2.3"; sha256="0y9j2dmw69a1n63mnbz8qg4pk69dzzhg42l3cq9i0s0yg8pp4pj6"; depends=[CompQuadForm GUniFrac lme4 MASS Matrix mixtools PearsonDS permute quantreg survival]; }; @@ -3125,13 +3184,14 @@ in with self; { MiRSEA = derive2 { name="MiRSEA"; version="1.1"; sha256="0jpl6ws5yx1qjzdnip9a37nmvx81az4cbsjm57x613qjpwmg6by3"; depends=[]; }; MiSPU = derive2 { name="MiSPU"; version="1.0"; sha256="1l6q0fm5z5i6gigr940h8kc5rka08psmhcprp8grmsxk3qy2kply"; depends=[ape aSPU cluster Rcpp RcppArmadillo vegan]; }; MicSim = derive2 { name="MicSim"; version="2.0.0"; sha256="1pkwhp81gi0pzs1sypk7ckhd79gz977n2ly9lwlsm5l3xs72v5cy"; depends=[rlecuyer snowfall]; }; - MicroDatosEs = derive2 { name="MicroDatosEs"; version="0.8.14"; sha256="0ialj1hp4zn0yng0hnm3r2qmcwh44r3f3anq5qq4a4shh014c94y"; depends=[readr]; }; + MicroDatosEs = derive2 { name="MicroDatosEs"; version="0.8.15"; sha256="0amclp66094g96jlr4ks85l3y88fimlh8ws6jp1p74hpfbmd9ykc"; depends=[readr]; }; MicroMacroMultilevel = derive2 { name="MicroMacroMultilevel"; version="0.4.0"; sha256="1q5cyqr4hdl1wp2isk6p4p084i83kg6hd406wdp1nj9lv5i0xvgw"; depends=[]; }; MicroMoB = derive2 { name="MicroMoB"; version="0.1.2"; sha256="0ghab143lr333v7qih30jc9n78pwcgam4nzaz7j1g4cnis5wfkbx"; depends=[abind jsonlite]; }; MicroNiche = derive2 { name="MicroNiche"; version="1.0.0"; sha256="166ci4crkwnnh05rhs5hyrljgm4cdf7gp0ff8kjxjmd60byw80mz"; depends=[ggplot2 reshape2]; }; MicrobiomeStat = derive2 { name="MicrobiomeStat"; version="1.1"; sha256="1j5sar85a1gksc83pc4ypxwb0c7whxglx069zarphrgqfazcr1m4"; depends=[foreach ggplot2 ggrepel lmerTest MASS Matrix matrixStats modeest phyloseq statmod]; }; MicrobiomeSurv = derive2 { name="MicrobiomeSurv"; version="0.1.0"; sha256="00wx8vdbkxcn6cp243vbxyzx52hpcxpvxx8hq44gykc7238qcvhv"; depends=[dplyr ggplot2 glmnet gplots lmtest microbiome pls superpc survival survminer tidyr]; }; Microsoft365R = derive2 { name="Microsoft365R"; version="2.4.0"; sha256="0vcp8nhphl9yp4rp53nvkm82zqmn1jsc9m6agxmmsqby8795p7h1"; depends=[AzureAuth AzureGraph curl httr jsonlite mime R6 vctrs]; }; + MigrationDetectR = derive2 { name="MigrationDetectR"; version="0.1.1"; sha256="0qq5xac4j8bm1705rmjvbcxhdhrq0pfqzrlb9vgbnsfm4l0iy84w"; depends=[assertthat dplyr lifecycle lubridate tibble tidyr]; }; MinEDfind = derive2 { name="MinEDfind"; version="0.1.3"; sha256="1y0iv92mp7hf14vrj54qd0yvmjrv52jv3vg25kc5q7pml63njkqa"; depends=[ggplot2 gridExtra Iso]; }; MindOnStats = derive2 { name="MindOnStats"; version="0.11"; sha256="13995v4n0hfb53w02jk81pl7nazkvqwwv87y1sr99jr9ppzc08mz"; depends=[]; }; Minirand = derive2 { name="Minirand"; version="0.1.3"; sha256="19lib0qh3xfzvpgsskl3yypmjygss0w7pimz0136av0px5b4jran"; depends=[]; }; @@ -3159,11 +3219,11 @@ in with self; { MixedPsy = derive2 { name="MixedPsy"; version="1.1.0"; sha256="1iz3cl19xlznzbqxvichbjhyhams4v9611p9094r6q5fpmf71p88"; depends=[beepr boot brglm ggplot2 lme4 Matrix mnormt]; }; MixedTS = derive2 { name="MixedTS"; version="1.0.4"; sha256="0gwcg115idbcm5llgzqsygvqgshq8dywawxkaddsmw4sbbhj4555"; depends=[MASS]; }; MixfMRI = derive2 { name="MixfMRI"; version="0.1-3"; sha256="1cpkqvjkhr3l4y522xgjx2mwsvpzivf2h9wxslhgsqwds52ij0ad"; depends=[EMCluster fftw MASS Matrix MixSim RColorBrewer]; }; - MixtureMissing = derive2 { name="MixtureMissing"; version="2.0.0"; sha256="0c01i64n53q15n97j7rfayj9h0wj4r64fvs50fid38kkk16wii2i"; depends=[Bessel cluster MASS mnormt mvtnorm numDeriv]; }; + MixtureMissing = derive2 { name="MixtureMissing"; version="3.0.0"; sha256="1chjmmbw69ab8ibhn9r4iirrmrnrc6qwddncaxzgp12ikk7pi1db"; depends=[Bessel cluster MASS mnormt mvtnorm numDeriv]; }; MixviR = derive2 { name="MixviR"; version="3.5.0"; sha256="0npwwpb96id4zkrp4qzpiv5sgw6y4aqhhwx7v8vbg54029p6jj6w"; depends=[Biostrings dplyr DT ggplot2 glue httr lubridate magrittr plotly readr shiny stringr tidyr vcfR]; }; Mmcsd = derive2 { name="Mmcsd"; version="1.0.0"; sha256="1vj9qissby967a4z21772vj49hxhjppsn4w6l6s998pll8500np5"; depends=[dplyr knitr magrittr purrr rlist tibble tidyr]; }; MoBPS = derive2 { name="MoBPS"; version="1.6.64"; sha256="12czwx362pn0crj047rqb9ambl1fw73k474i7vcxhz53kbw21wj0"; depends=[]; }; - MoEClust = derive2 { name="MoEClust"; version="1.5.1"; sha256="0kfylrq6079bp1l2pc6qlzqnm6a42xbywj0gi5zi57lh9wx7bslb"; depends=[lattice matrixStats mclust mvnfast nnet vcd]; }; + MoEClust = derive2 { name="MoEClust"; version="1.5.2"; sha256="0wixcga2f06kpp7mq1nb32ya2v2wlx5r9h74danjfbhi3nvky903"; depends=[lattice matrixStats mclust mvnfast nnet vcd]; }; MoLE = derive2 { name="MoLE"; version="1.0.1"; sha256="0bq19vwqjn5hl4mw5imkydbp39gal992vnh2dwrq8bb8cmj3qh91"; depends=[]; }; MoNAn = derive2 { name="MoNAn"; version="0.1.2"; sha256="1dl3c0x3cmraav05b9mi4h8d0mlsiykshdrf54n83p3b3glc78bc"; depends=[snowfall]; }; MoTBFs = derive2 { name="MoTBFs"; version="1.4.1"; sha256="03c1k5vvswlhbsivw6yznw1v0cdl8avs514iaa2v2994j2yk40j6"; depends=[bnlearn ggm lpSolve Matrix quadprog]; }; @@ -3177,24 +3237,26 @@ in with self; { ModelMetrics = derive2 { name="ModelMetrics"; version="1.2.2.2"; sha256="0mrlsw4c5y1vdsqynxr2dcvmhh5h37pnd71jw5a5djpbda9g21jy"; depends=[data_table Rcpp]; }; Modelcharts = derive2 { name="Modelcharts"; version="0.1.0"; sha256="1jy78kyyh4r13px2d5bm7fra5bkcpimzfji0hmydspkfi3qla37x"; depends=[dplyr plotly]; }; Modeler = derive2 { name="Modeler"; version="3.4.5"; sha256="15gbg5568qj81wp6yy31amb2b7wl1wvlmgpmdp29lvz1p33jx2y1"; depends=[class ClassComparison ClassDiscovery e1071 neuralnet nnet oompaBase randomForest rpart TailRank]; }; - MolgenisArmadillo = derive2 { name="MolgenisArmadillo"; version="2.0.0"; sha256="12pzdppkxv3x8xjizhkm8iii64jxyi3zblyghvxv7gkmgxlzsf7h"; depends=[arrow base64enc httr MolgenisAuth urltools]; }; + MolgenisArmadillo = derive2 { name="MolgenisArmadillo"; version="2.3.0"; sha256="16b1mplxhy492i1j581lrd0crk1rzcyxcxda9b5dzvzhcjg81376"; depends=[arrow base64enc dplyr httr MolgenisAuth purrr rlist stringr tibble tidyr urltools]; }; MolgenisAuth = derive2 { name="MolgenisAuth"; version="0.0.25"; sha256="1ggij166zy0z05hmpwzdx2s1j38s9zr2ldayxljmcl348ds7rk7n"; depends=[httr urltools]; }; MomTrunc = derive2 { name="MomTrunc"; version="6.0"; sha256="0nfvq6ry1c5g1xjvf2qyr5pzpnsy420m6xgj0n3aj00wi0ifdyiz"; depends=[hypergeo mvtnorm Rcpp RcppArmadillo tlrmvnmvt]; }; + Momocs = derive2 { name="Momocs"; version="1.4.1"; sha256="0g8mxk62pdif47p96pzqzfjdjarqwyk71zw9avsgy160mz8mpd81"; depends=[cluster dendextend dplyr geometry geomorph ggplot2 jpeg magrittr MASS progress RColorBrewer sf sp tibble vegan]; }; Mondrian = derive2 { name="Mondrian"; version="1.1.0"; sha256="1x40cdry6dwixwqx10kv42xr4254kj1f17va186haw9m949xn5gd"; depends=[RColorBrewer]; }; MonetDB_R = derive2 { name="MonetDB.R"; version="2.0.0"; sha256="0b5flc9l4nshy2fmwxbzcsn7pdivwy3x6kic94ppyyiqzz41h0b1"; depends=[codetools DBI digest testthat]; }; MonoInc = derive2 { name="MonoInc"; version="1.1"; sha256="14rykw3bfj0vznz0rw4vsg1k4vanfv9cy867vspw966ncl4bw70h"; depends=[compare doParallel foreach iterators sitar]; }; MonoPhy = derive2 { name="MonoPhy"; version="1.3"; sha256="184nvwmxi28awq8fj1q0mliilbd4kaag673jydr47q1acql0dnmb"; depends=[ape phangorn phytools RColorBrewer taxize]; }; MonoPoly = derive2 { name="MonoPoly"; version="0.3-10"; sha256="0ls3sjfkinp9c5002ww0xm4l2galf20w2f45nm5irkk9sbqas0jq"; depends=[quadprog]; }; + MonotoneHazardRatio = derive2 { name="MonotoneHazardRatio"; version="0.1.1"; sha256="19c3521czz7kdwcc1vg1x17y57w0qh498y93xgbxxlmidzb0p4nk"; depends=[fdrtool KernSmooth survival twostageTE]; }; Monte_Carlo_se = derive2 { name="Monte.Carlo.se"; version="0.1.1"; sha256="1bkmah8s8hm3yxs8gz1ssr15s4l9s37675g7agx3g7f9a72v9zbs"; depends=[]; }; MonteCarlo = derive2 { name="MonteCarlo"; version="1.0.6"; sha256="1jwq3by8zfy6sbzahcj5l0vicqn7yyqpb7xhfsaymfspm7xyq6pj"; depends=[abind codetools reshape rlecuyer snow snowfall]; }; MonteCarloSEM = derive2 { name="MonteCarloSEM"; version="0.0.6"; sha256="0mnva4hd02a6f4fpll6ra4nn0chlx8wjixp1jx40krg3xnikqkj1"; depends=[lavaan Matrix]; }; - Morpho = derive2 { name="Morpho"; version="2.11"; sha256="1c69n9284chygd375gkir4nk5bjglamhfyk2lz4z3kzy3z25qw50"; depends=[bezier colorRamps doParallel foreach jsonlite MASS Matrix Rcpp RcppArmadillo rgl Rvcg sf]; }; + Morpho = derive2 { name="Morpho"; version="2.12"; sha256="1hg1jr0y11v93mqg2kn8n841nbsiffhyyr2kswj7kk664vlpril0"; depends=[bezier colorRamps doParallel foreach jsonlite MASS Matrix Rcpp RcppArmadillo rgl Rvcg sf]; }; MorphoTools2 = derive2 { name="MorphoTools2"; version="1.0.1.1"; sha256="08n9l905pfls50p278sypf8xxq6bs56f5a5b5wlxwy11flccpyia"; depends=[ade4 candisc car class ellipse heplots MASS plot3D StatMatch vegan]; }; Morphoscape = derive2 { name="Morphoscape"; version="1.0.2"; sha256="1f4cj5086r1849dwmha8drf7jq56p7bp0fj2liqksppy7gxmdrs4"; depends=[alphahull automap concaveman ggplot2 scales sp spatial viridisLite]; }; MortCast = derive2 { name="MortCast"; version="2.7-0"; sha256="1hw20wb0sl8q09vv68hid90ma2ml866kglsjf38kqky1whmihfbc"; depends=[wpp2017]; }; MortalityGaps = derive2 { name="MortalityGaps"; version="1.0.0"; sha256="0nfm8xa7gnshrl8hsvmvr3za8nbppp7f7i5h4ni204w7xwvh8jxc"; depends=[crch forecast MASS pbapply]; }; MortalityLaws = derive2 { name="MortalityLaws"; version="2.0.3"; sha256="1vd9jsrh35jk851j9ap2cm3r14isw1xp2vxq2j1h7px8v0gavw40"; depends=[httr minpack_lm pbapply RCurl rvest tidyr]; }; - MortalityTables = derive2 { name="MortalityTables"; version="2.0.4"; sha256="0bf5z8bynadccf0gn61zj2rcqmskf6vhjznxnxk11303p6a11phc"; depends=[ggplot2 pracma scales]; }; + MortalityTables = derive2 { name="MortalityTables"; version="2.0.5"; sha256="1vk69smq4px796xsk4j4zfzrddndwns86jr2qi56aqqg6mix341p"; depends=[ggplot2 pracma scales]; }; MplusAutomation = derive2 { name="MplusAutomation"; version="1.1.0"; sha256="011sd6v0zd5yr842k69fc8fn12lf7vw3v0rqmjwp6b2c8drw1b51"; depends=[boot checkmate coda data_table digest fastDummies ggplot2 gsubfn lattice pander plyr rlang texreg xtable]; }; MplusTrees = derive2 { name="MplusTrees"; version="0.2.2"; sha256="0jbh3ixamj2ra1jfrzdfrxg7q3w2h82ymwxbsl8ac59bh06hzk46"; depends=[MplusAutomation nlme rpart rpart_plot]; }; Mqrcm = derive2 { name="Mqrcm"; version="1.2"; sha256="1alfv76b90frimihjcq8whzqkwvhnnw2fd92nrfpnfj5dw0b56f5"; depends=[Hmisc pch]; }; @@ -3204,13 +3266,13 @@ in with self; { MuViCP = derive2 { name="MuViCP"; version="1.3.2"; sha256="1wkiwdz4bblxf1zr57khljqkga9ks9aj1lnidvmhib94q6b8fnf4"; depends=[gtools MASS sm]; }; MullerPlot = derive2 { name="MullerPlot"; version="0.1.3"; sha256="17n3w76a1fqqirshd754pi0p302pi1bld3iv4zi0g7q9ml2q42iw"; depends=[RColorBrewer]; }; MultAlloc = derive2 { name="MultAlloc"; version="1.2"; sha256="0c3sqfaa08s8mk4yz77kh6q6v9ic5xp52g9prfw1k2kv4nw1k2qd"; depends=[Rglpk]; }; - MultBiplotR = derive2 { name="MultBiplotR"; version="1.3.30"; sha256="0cnn8m4yd2w0izbsvrlqgxif41554nq3hj7m169lxwxrb0csybcf"; depends=[car dae deldir dunn_test geometry GPArotation gplots Hmisc lattice MASS mirt mvtnorm optimr polycor rgl scales xtable]; }; + MultBiplotR = derive2 { name="MultBiplotR"; version="23.11.0"; sha256="0qcf97r9f5l572dckfvi9pjl2gvc6zw36z34pbbfwxha8bnqiyqc"; depends=[car dae deldir dunn_test geometry GPArotation gplots Hmisc knitr lattice MASS mirt mvtnorm polycor psych scales ThreeWay xtable]; }; MultEq = derive2 { name="MultEq"; version="2.4"; sha256="0x0mfmrfcjdv7v5nlakmjh2ilmgn15xgzc4qgm6djkif6565v46i"; depends=[]; }; MultIS = derive2 { name="MultIS"; version="0.6.2"; sha256="02ca1r8qfsl1b8rfawdn4xrlwhg5yab260rrsx8ckyv3v75knk8f"; depends=[cluster clv clValid dplyr foreach ggplot2 igraph ltm plyr poweRlaw RColorBrewer reshape2 rlang rmutil]; }; MultNonParam = derive2 { name="MultNonParam"; version="1.3.9"; sha256="0p66pqairn0k3ciz31ykb2kk0mr4jyzvarkf1knlh3dkvagh7pvj"; depends=[ICSNP]; }; MultOrdRS = derive2 { name="MultOrdRS"; version="0.1-2"; sha256="0bra4z37njkcgah3a1k6mxcnmxq85188jywhgx3fdb1wnv5ic549"; depends=[Rcpp RcppArmadillo statmod]; }; MultSurvTests = derive2 { name="MultSurvTests"; version="0.2"; sha256="04crh4hbfhl8cr0faawv71lyabyilhxpg6i8sr9ki80982mbzcnd"; depends=[Rcpp RcppArmadillo Rdpack]; }; - MultiATSM = derive2 { name="MultiATSM"; version="0.3.4"; sha256="0cni4926xn0kfny1w0kkjhgwrb0bjqxa8cl4bx04xlch1n5f9692"; depends=[ggplot2 hablar pracma wrapr zoo]; }; + MultiATSM = derive2 { name="MultiATSM"; version="0.3.5"; sha256="0hcmf5hy4rab0kzwzxs15bs5n0czsc68m4f8j3ib4hjf33rd4i1a"; depends=[ggplot2 hablar pracma wrapr zoo]; }; MultiBD = derive2 { name="MultiBD"; version="0.2.0"; sha256="1qjfr8hx8sr5m8370yzi09r8jnh3i6907wzj3v4h83vmjh81db71"; depends=[BH Rcpp RcppParallel]; }; MultiClassROC = derive2 { name="MultiClassROC"; version="0.1.0"; sha256="06ns1yl16yxaksiv1mjwzkixc03mzz4rlidkzan0nxi9fqfp7nvc"; depends=[ggplot2 pROC]; }; MultiFit = derive2 { name="MultiFit"; version="1.1.1"; sha256="086bnqp61mfanrhi7dqaq5j2ddg3rfiyms0f5wj34svcjal9wjvc"; depends=[data_table Rcpp RcppArmadillo]; }; @@ -3218,9 +3280,9 @@ in with self; { MultiGroupO = derive2 { name="MultiGroupO"; version="0.1.0"; sha256="18d7wfsfyqzrjicp2grfgh582pr6a1fqx7xbnqaj93x3w30pxscg"; depends=[cowplot expm ggplot2 ggrepel gplots gridExtra mgm mvtnorm plsgenomics qgraph rlist]; }; MultiGroupSequential = derive2 { name="MultiGroupSequential"; version="1.1.0"; sha256="0mx0a10260ks77njxf7yhxwhw66b7rjlqkjxmidvxbl6r0jfgr5b"; depends=[hommel OpenMx]; }; MultiJoin = derive2 { name="MultiJoin"; version="0.1.1"; sha256="0cfk6yc5jagj9y8xybw6yg0yph4zah2vzaxv0384ad6r0r3x3nm8"; depends=[]; }; - MultiKink = derive2 { name="MultiKink"; version="0.1.0"; sha256="0vi629mjmyrh03g3kx4vl47s52bggdxbq2wrdcf892g7xasbmv2b"; depends=[MASS quantreg]; }; + MultiKink = derive2 { name="MultiKink"; version="0.2.0"; sha256="14npzvidqiy25ldg2g4vyj6bbrmi9vbpswbm9ah9hc4sdjdq344h"; depends=[gam Matrix pracma quantreg]; }; MultiLCIRT = derive2 { name="MultiLCIRT"; version="2.11"; sha256="1qls0qp5fz377h50lvpzq3vkw49i3nvizli98gss50nqci8ssqm4"; depends=[limSolve MASS]; }; - MultiObjMatch = derive2 { name="MultiObjMatch"; version="0.1.2"; sha256="0bqr1yv4bmxlb8qha0saxkra0x1qch9g0kzp25qia8yz2fs41bpa"; depends=[cobalt dplyr fields gtools MASS matchMulti optmatch plyr rcbalance RCurl rlemon]; }; + MultiObjMatch = derive2 { name="MultiObjMatch"; version="0.1.3"; sha256="1a20ca8k7plgdz084hrjrlx7p1nm1cl74v3vlk3jk1dwbgq04833"; depends=[cobalt dplyr fields gtools MASS matchMulti optmatch plyr rcbalance RCurl rlemon]; }; MultiOrd = derive2 { name="MultiOrd"; version="2.4.3"; sha256="1fmp8979ibxrx43vhi6dncljpbc1388y915d4g0gnl6a7z8g1dnh"; depends=[corpcor Matrix mvtnorm psych]; }; MultiPhen = derive2 { name="MultiPhen"; version="2.0.3"; sha256="0razswg4wqsz4q0dvpxp3swmxk82ig8gkyi4vcmxh11nlhb258w3"; depends=[abind epitools HardyWeinberg MASS meta RColorBrewer]; }; MultiRNG = derive2 { name="MultiRNG"; version="1.2.4"; sha256="189b2n5fy4sl63xifhlk88kahkn0qkh9szrkmzlq40vrwsbfximn"; depends=[]; }; @@ -3247,6 +3309,7 @@ in with self; { Mychisq = derive2 { name="Mychisq"; version="0.1.3"; sha256="0667ldi1qm47cpdr0j7gv7c6f8s5wj7naqcgv9harrsmm4vsr4w6"; depends=[]; }; N2H4 = derive2 { name="N2H4"; version="0.8.2"; sha256="1bqkjfw14jlk3hr10g5djp358qj07c8x4xyjsrcs86zx6yq2gbda"; depends=[httr2 jsonlite magrittr purrr rvest tibble]; }; N2R = derive2 { name="N2R"; version="1.0.1"; sha256="12bv7xx6j6222qgpv6g61i68017fz0x6fjg9a9k5yhgw3zk05hpk"; depends=[Matrix Rcpp RcppEigen RcppSpdlog]; }; + NAC = derive2 { name="NAC"; version="0.1.0"; sha256="0mjwybnxqxcvkkjkx920n70png1p8pslg5j2v8ya9y9j5nrxjngl"; depends=[pracma]; }; NACHO = derive2 { name="NACHO"; version="2.0.5"; sha256="1w32gnpi9hna2icrv5ig1qkpdrz6n3x79hkjz5fqschicg7fx4z4"; depends=[data_table ggforce ggplot2 ggrepel knitr rmarkdown shiny shinyWidgets]; }; NADA = derive2 { name="NADA"; version="1.6-1.1"; sha256="0jp4mqr77cx7q5lff84s6wb0dwjy9mi0jyhbjc5fsx50bdczc3v7"; depends=[survival]; }; NADA2 = derive2 { name="NADA2"; version="1.1.5"; sha256="15jv7pr36l5n3anf772vz5w5aj0lxx6fswsyj59rh54ap8a77jxb"; depends=[cenGAM coin EnvStats fitdistrplus Kendall mgcv multcomp NADA perm survival survminer vegan]; }; @@ -3258,7 +3321,7 @@ in with self; { NAP = derive2 { name="NAP"; version="1.1"; sha256="19j1ngl92vqjqsk893zfsgk6fard2aswcm1553kh9fzv2idvr36s"; depends=[doParallel foreach]; }; NB_MClust = derive2 { name="NB.MClust"; version="1.1.1"; sha256="0hzmrszxgx3pylf9pjjwk2ryjhwz7naxxkhcqpnfjv337vv5dg0i"; depends=[MASS]; }; NBAloveR = derive2 { name="NBAloveR"; version="0.1.3.3"; sha256="0k1f14srzks26x5wnhj8mrfwcq7wgbywcklr804lxsh04h4d6pwp"; depends=[dplyr magrittr tidyr]; }; - NBBDesigns = derive2 { name="NBBDesigns"; version="1.0.0"; sha256="0fm7i6cvwy7b29d1ig3s7akpb2kqf5xm5nqarhwmy79c1kll9jyb"; depends=[MASS]; }; + NBBDesigns = derive2 { name="NBBDesigns"; version="1.1.0"; sha256="0vb7iglzbkk3dvh4z7ia7zjds4i2anw5y50vjg2k0sb9q0zi5hvp"; depends=[]; }; NBBttest = derive2 { name="NBBttest"; version="1.0.1"; sha256="13p6kkakg2hd27xmh6vjnn8w161qaw23xzsx99pjgvz7w0n9idv3"; depends=[gplots gtools]; }; NBDdirichlet = derive2 { name="NBDdirichlet"; version="1.4"; sha256="11iqn74k7q6g7if35237jzabknjcdaanbq83hjicb2m0l5h31vvn"; depends=[]; }; NBDesign = derive2 { name="NBDesign"; version="2.0.0"; sha256="0593rh2lf8wlxzjmwh2xx3jsb6miqx0wipqw9di10cbxbf6binb1"; depends=[MASS PWEALL]; }; @@ -3299,7 +3362,7 @@ in with self; { NLPclient = derive2 { name="NLPclient"; version="1.0"; sha256="0jhlz9mqziyk5574vl8qjjs4g75x27rlk90wvzm3q9kjrjyvad35"; depends=[curl NLP xml2]; }; NLPutils = derive2 { name="NLPutils"; version="0.0-5.1"; sha256="1ca7cqfjzrhn0idgw8viqlr2w4lkzng64bqk8hvd08qm7bgg5vjl"; depends=[NLP qdap SnowballC]; }; NLRoot = derive2 { name="NLRoot"; version="1.0"; sha256="1x8mcdgqqrhyykr12bv4hl4wbh1zw2qgpnd2yrm68kb92iy95rh4"; depends=[]; }; - NMA = derive2 { name="NMA"; version="1.3-2"; sha256="037a6m7lg1k4pjcrad4p4vcjx82v1r1j5yh1kncx95wgf441jmr4"; depends=[forestplot ggplot2 MASS metafor stringr]; }; + NMA = derive2 { name="NMA"; version="1.4-1"; sha256="0n9i1ph4pikf7nwsybn7s33h9s20qhvzggrjgj3njzadam47rvgx"; depends=[forestplot ggplot2 MASS metafor stringr]; }; NMADiagT = derive2 { name="NMADiagT"; version="0.1.2"; sha256="0fskc3ldfdl17gazpfr2hixy79n7db4c1f5yl1jalhwxiabnxjwp"; depends=[coda ggplot2 imguR ks MASS MCMCpack plotrix Rdpack reshape2 rjags]; }; NMAoutlier = derive2 { name="NMAoutlier"; version="0.1.18"; sha256="0h0pxjg6ppz9zv7wcv1dka5g0f9wxk3bnwicfpsv1advcam4vmmn"; depends=[ggplot2 gridExtra MASS meta netmeta reshape2]; }; NMF = derive2 { name="NMF"; version="0.26"; sha256="1h1fpjnj6vjvi9ygxpfxs8k5bhly0aflr54zj88khgzkylp5ci4d"; depends=[Biobase BiocManager cluster codetools colorspace digest doParallel foreach ggplot2 gridBase RColorBrewer registry reshape2 rngtools stringr]; }; @@ -3307,14 +3370,14 @@ in with self; { NMI = derive2 { name="NMI"; version="2.0"; sha256="1rxphy9rhy9zhdiz48dvl9m26x6k681lnyn39lqxs0a6jhrxg7y3"; depends=[]; }; NMMIPW = derive2 { name="NMMIPW"; version="0.1.0"; sha256="13mv6dpmlldqxkxq6kiydsfwyys5w7i8ws80a5l3377i5chdqi2c"; depends=[lava nloptr numDeriv]; }; NMOF = derive2 { name="NMOF"; version="2.8-0"; sha256="12n2dsgng39q9jn8m6q7bx2va389ham869yb5ydkwrqywjdkmibd"; depends=[]; }; - NMRphasing = derive2 { name="NMRphasing"; version="1.0.1"; sha256="007xxgpq9nw646x1vim0j2ci7r077iww7z6n1g7gm3p5928x9l99"; depends=[baseline MassSpecWavelet]; }; + NMRphasing = derive2 { name="NMRphasing"; version="1.0.3"; sha256="0c0hg4zamr33qll6la55gi97gh4ri1zy0hln3cmj221yimj6h9f4"; depends=[baseline MassSpecWavelet]; }; NMTox = derive2 { name="NMTox"; version="0.1.0"; sha256="1slz6bq57l3f2wqd2nhm3b7dag6vg7wy9zi5rpl7ld1yyqfb0wfp"; depends=[dplyr forcats ggplot2 gridExtra Iso tidyr]; }; NMVANOVA = derive2 { name="NMVANOVA"; version="1.1.0"; sha256="1jlqyg5vn7j8srvifjghd5a7820kadl8kbwib4qxalrfprq81h8p"; depends=[]; }; - NMcalc = derive2 { name="NMcalc"; version="0.0.1"; sha256="15jf38yvyiasq6bvnv23znp64njag432f1jb9zayghsny63m3dcl"; depends=[data_table]; }; - NMdata = derive2 { name="NMdata"; version="0.1.2"; sha256="0r9rzq4qi2i49b03ap8s2cqx5vbbrdsh3xmqancq62r8fiydvzbd"; depends=[data_table fst]; }; - NMsim = derive2 { name="NMsim"; version="0.0.4"; sha256="1k6ifkkjl2dzravj2l0nfhf4aycy4hwk2gpvhl4jxfapbcr083vb"; depends=[data_table MASS NMdata R_utils]; }; + NMcalc = derive2 { name="NMcalc"; version="0.0.3"; sha256="199pd9wmakrk96vqb1gwwq6pwsk00r4vn6r3ff9awylwl6vbs7bq"; depends=[data_table]; }; + NMdata = derive2 { name="NMdata"; version="0.1.4"; sha256="088wbj4i6mfrdmd0rna182izdjjl4d73npzyqgmgn1v02nfrp67d"; depends=[data_table fst]; }; + NMsim = derive2 { name="NMsim"; version="0.0.7"; sha256="0ciypdpwr694sjkvl1hq7lg22zp39ifb5f0va9vdhyss7lvx32xi"; depends=[data_table fst MASS NMdata R_utils]; }; NNMIS = derive2 { name="NNMIS"; version="1.0.1"; sha256="1w2i4xlx249p589yqdgbx1ra406ycxw729vbk1lqadbn71m6blaz"; depends=[survival]; }; - NNS = derive2 { name="NNS"; version="10.2"; sha256="0q6zgs15nm4jlg5mwd3a0g0rqh8665gqd33farxx00zzq0d8gv6c"; depends=[caret data_table doParallel foreach meboot quantmod Rcpp RcppParallel Rfast rgl stringr xts zoo]; }; + NNS = derive2 { name="NNS"; version="10.4"; sha256="14r2iyvrkmn69frkp9dmx7dznisbwn5ajspl32g8f7lb3dx7q98g"; depends=[caret data_table doParallel foreach meboot quantmod Rcpp RcppParallel Rfast rgl stringr xts zoo]; }; NNTbiomarker = derive2 { name="NNTbiomarker"; version="0.29.11"; sha256="0sqlf7vzhpmq2g98c2qlrcqn3ba4ycfxbczgcjiqqhqsvgkpacc1"; depends=[magrittr mvbutils shiny stringr xtable]; }; NNbenchmark = derive2 { name="NNbenchmark"; version="3.2.0"; sha256="086smk3xy6p6ianw41h3gx806q7h28v1dg9d3khsrwyyf9gn8xyp"; depends=[pkgload R6]; }; NO_PING_PONG = derive2 { name="NO.PING.PONG"; version="0.1.6"; sha256="1i8pwk4p43yqmk8irkmvza080sngmng0wv1yr847253a0frjg9mr"; depends=[MASS MCMCglmm metafor]; }; @@ -3322,14 +3385,15 @@ in with self; { NPBayesImputeCat = derive2 { name="NPBayesImputeCat"; version="0.5"; sha256="05zwa7hhf8p1icgdvvla0r70fgvjm7s38gp69h7wgsq8yl6vd876"; depends=[bayesplot dplyr ggplot2 Rcpp reshape2 rlang]; }; NPCD = derive2 { name="NPCD"; version="1.0-11"; sha256="107i33z4q5w2828sm0pm8234kmp1v3a2w72lmhvi0rpnjhg0x120"; depends=[BB R_methodsS3]; }; NPCirc = derive2 { name="NPCirc"; version="3.1.1"; sha256="0qcam9n9llsblrpa2w0yj0axh79qwinz4wwbf4gvyrajfv935i8i"; depends=[Bolstad2 circular misc3d movMF plotrix Rcpp RcppArmadillo rgl shape]; }; - NPCox = derive2 { name="NPCox"; version="1.1"; sha256="09cyaj2xlad8277bw5nbdi51imhw5dr78zqks0cz3513igc262sa"; depends=[]; }; + NPCox = derive2 { name="NPCox"; version="1.2"; sha256="0l3nrs7mqcpbh8qjzn6ckr6r12zzawb6jsmqb52ljhamrvskmg9j"; depends=[]; }; NPHMC = derive2 { name="NPHMC"; version="2.3"; sha256="0mi92rnpm96nc2ip10022qa7cjrlry9aibw8yx9xmn826bqipwir"; depends=[smcure survival]; }; NPHazardRate = derive2 { name="NPHazardRate"; version="0.1"; sha256="0na4iphva1dadz457ii8kxrhnki2asaxpbwr824rljyrldj9rcgg"; depends=[survival]; }; NPIstats = derive2 { name="NPIstats"; version="0.1.0"; sha256="0hbx2mzz1z2158c943dqfn0pq1aybj1xxy55mmvld4djr5zrlz9w"; depends=[dplyr]; }; NPMLEcmprsk = derive2 { name="NPMLEcmprsk"; version="3.0"; sha256="0nm88fsxgrfk0j0lmir57bhxy4p8ah503gpj6jdlvjqw862jigiq"; depends=[]; }; - NPP = derive2 { name="NPP"; version="0.5.0"; sha256="1c45gkqx27685am2qfiyq7rnlz809lmyi3jhffgf3jhqcyg9mwm7"; depends=[]; }; + NPP = derive2 { name="NPP"; version="0.6.0"; sha256="1jyxnblr8ibzlwb78k98idf856m5gnaba3b53qz0pfgxf2k8wdhv"; depends=[]; }; NPRED = derive2 { name="NPRED"; version="1.0.7"; sha256="0nkfgc9zy3gszmnay77yj7i0p8w1q8j1m9wb05hkrmhiacp4mbn4"; depends=[]; }; NPflow = derive2 { name="NPflow"; version="0.13.3"; sha256="1bgdkm82pmzjv46pkxpvh5ffffmc6q68x5jjl7k330w9vwgx2kf0"; depends=[ellipse fastcluster ggplot2 pheatmap Rcpp RcppArmadillo reshape2 truncnorm]; }; + NRAHDLTP = derive2 { name="NRAHDLTP"; version="0.1.2"; sha256="1dryd9riba3gch7z6ylszbrzw7j40b7cp1z2kyllhk4w2hzrkxm7"; depends=[expm Rcpp RcppArmadillo Rdpack readr]; }; NRejections = derive2 { name="NRejections"; version="1.2.0"; sha256="0lzj7kyn4s8l306a6xwkgkv1z4dlfsr61i902lvdxv4ln4m6a5kq"; depends=[doParallel foreach matrixcalc mvtnorm StepwiseTest]; }; NSAE = derive2 { name="NSAE"; version="0.4.0"; sha256="1pig0b2g6z1pc6is3nw7m88zwvwpg3pwvifvyc6p38kbin57m1pb"; depends=[cluster lattice MASS Matrix nlme numDeriv rlist SemiPar spgwr]; }; NSM3 = derive2 { name="NSM3"; version="1.18"; sha256="0m0ijafjlw9pili0hxfrv5blj9ysxhhwj6c4hpnp5ry97a4gkib9"; depends=[agricolae ash binom BSDA coin combinat fANCOVA gtools Hmisc km_ci MASS metafor nortest np partitions quantreg Rfit SuppDists survival waveslim]; }; @@ -3340,6 +3404,7 @@ in with self; { NTSS = derive2 { name="NTSS"; version="0.1.2"; sha256="1i3y3psr17p8p7s799sdki3pndb82pydl2g3dcz18snynjpmd31j"; depends=[geoR GET ks spatstat spatstat_explore spatstat_geom spatstat_model spatstat_random]; }; NU_Learning = derive2 { name="NU.Learning"; version="1.5"; sha256="03g6hy9x9r9ydld14qpglxh09amm65hinq8i4wbnqhvg4b3wqbjx"; depends=[cluster lattice]; }; NUCOMBog = derive2 { name="NUCOMBog"; version="1.0.4.2"; sha256="0s6gm3adc9qdh94pxzgccbxx1f1lbgqyvd4xk37xp6f3b5hwljdz"; depends=[snowfall]; }; + NUETON = derive2 { name="NUETON"; version="0.1.0"; sha256="0sqd2pcsy2c2s77aivi5s4mnb7xkzja9hnc4cgdgx4hdisdwvgdj"; depends=[]; }; NVCSSL = derive2 { name="NVCSSL"; version="2.0"; sha256="1nsdhmay2blfa07ri1kfb204di8s5i7zk7qwwlbkhdjjl0qa3vd7"; depends=[dae GIGrvg grpreg MASS Matrix MCMCpack mvtnorm plyr]; }; NameNeedle = derive2 { name="NameNeedle"; version="1.2.7"; sha256="14w8amhaar6wksnpkssdgjlmyqb4n7qxda29vy6rps2dxfvi6klc"; depends=[]; }; NasdaqDataLink = derive2 { name="NasdaqDataLink"; version="1.0.0"; sha256="1dxsp8dq0r7zvl5rlx8x068lx30v06zzyapzq2zv207shhwgd9lq"; depends=[httr jsonlite xts zoo]; }; @@ -3360,12 +3425,13 @@ in with self; { NetFACS = derive2 { name="NetFACS"; version="0.5.0"; sha256="05lqfawirdw4fh0hawm815hjdpyli7025dz3a5fsm6jh3l906z9i"; depends=[arrangements doParallel dplyr ggplot2 ggraph igraph magrittr patchwork picante Rfast rlang tibble tidygraph tidyr vctrs]; }; NetIndices = derive2 { name="NetIndices"; version="1.4.4.1"; sha256="0zi3b9i2apfdcm85k7ah6r6ad0v6rji5gysb410vc3bgrixa03lk"; depends=[MASS]; }; NetInt = derive2 { name="NetInt"; version="1.0.0"; sha256="08vmqjai1lakbb4zs895fn0hn3gw2q7zsdkx6yxidfff5qn4mq6b"; depends=[mathjaxr]; }; - NetMix = derive2 { name="NetMix"; version="0.2.0.1"; sha256="0363z06y7ildk7bifhj2lmva0hf591nyp10x9ccd6csj387n968p"; depends=[clue gtools igraph lda MASS Matrix poisbinom Rcpp RcppArmadillo]; }; + NetLogoR = derive2 { name="NetLogoR"; version="1.0.5"; sha256="003il26z4xs90772l66xh21ivkl031w81pvc5zqfr35r2xmmd4cn"; depends=[data_table quickPlot terra]; }; + NetMix = derive2 { name="NetMix"; version="0.2.0.2"; sha256="1j45zxlirlsph411k76vzawd2zg9bldfp2r9z4pi5zdk129fprb5"; depends=[clue gtools igraph lda MASS Matrix poisbinom Rcpp RcppArmadillo]; }; NetOrigin = derive2 { name="NetOrigin"; version="1.1-6"; sha256="0brjg6w79r6bkga9dpqph9l7k6wq5hvsjfhrwx7dnyr437f7z4hk"; depends=[colorspace corpcor dplyr Hmisc igraph mvtnorm plyr tibble]; }; NetPreProc = derive2 { name="NetPreProc"; version="1.2"; sha256="07drrgvgl3msbcxi113hinqss30lkzrv9hqkzwa41bpssfq8x68c"; depends=[graph]; }; NetRep = derive2 { name="NetRep"; version="1.2.7"; sha256="02ss45giv30pi31b5rysa36bn5c4fs5x58g4vb0arz9cnicznv97"; depends=[abind BH foreach RColorBrewer Rcpp RcppArmadillo RhpcBLASctl statmod]; }; NetSci = derive2 { name="NetSci"; version="1.0.0"; sha256="1fliilk5z7lldkry5kijwab0k6ysqy87fcfrnwyywxkpxxrv1578"; depends=[binr cubature dplyr igraph magrittr Rfast wTO]; }; - NetSimR = derive2 { name="NetSimR"; version="0.1.3"; sha256="10rplfz94kj0lhlzv7nl0lsiwgimfjgcwz03rwhdixxwnlyj03gp"; depends=[DBI future future_apply plotly rmarkdown RMySQL RODBC RPostgreSQL RSQLite scales shiny shinybusy shinyjs]; }; + NetSimR = derive2 { name="NetSimR"; version="0.1.5"; sha256="1ipxr7wqlxa6qk5hhhbkr274v7f0hb1zjndcjgsk4gmv7cl7w21j"; depends=[DBI fitdistrplus future future_apply MASS Pareto plotly rmarkdown RMySQL RODBC RPostgreSQL RSQLite scales shiny shinybusy shinyjs shinyWidgets]; }; NetSwan = derive2 { name="NetSwan"; version="0.1"; sha256="1mwdy3ahagiifj2bd1ajrafvnxzi74a1x1d3i2laf1hqpz3fbgld"; depends=[igraph]; }; NetWeaver = derive2 { name="NetWeaver"; version="0.0.6"; sha256="058fi3vbp11mbg69n4yp1zf48akfdl6s2p0qpa0v6ngmk2zjk0bq"; depends=[]; }; NetworkChange = derive2 { name="NetworkChange"; version="0.8"; sha256="03rzyfiwbqpr4jj3wdg3s1gnfizz39j07yk0q2fkq3a8pfx4w306"; depends=[abind GGally ggplot2 ggrepel ggvis gridExtra igraph MASS MCMCpack mvtnorm network qgraph RColorBrewer reshape rlang Rmpfr tidyr]; }; @@ -3391,30 +3457,34 @@ in with self; { NlsyLinks = derive2 { name="NlsyLinks"; version="2.2.1"; sha256="19w7jgvdz77lmwks0a4icrkarjfnwx6bcjkj4ss90zjs7nsfyafb"; depends=[lavaan]; }; Nmisc = derive2 { name="Nmisc"; version="0.3.7"; sha256="1k43cp63h96xv3f28fpvw7p2yh3lv1jbhq9bdp3yk6cg0870vya7"; depends=[dplyr magrittr purrr rappdirs rlang stringr tibble tidyselect]; }; Nmix = derive2 { name="Nmix"; version="2.0.5"; sha256="03zc2g9jlxp4nn78c7l7z9jf83l8xsw57aiz9p62dw7vxjj318xd"; depends=[]; }; - NonCompart = derive2 { name="NonCompart"; version="0.6.0"; sha256="0cda8rd45irx8q33zs9hcfhsanq09hnx3fpkpa9173pn0j6iw0zv"; depends=[]; }; + NobBS = derive2 { name="NobBS"; version="1.0.0"; sha256="0dvl97v2nzaamlr327mdm51lpzm4z3451fwivvp0ijvbac3cc29r"; depends=[coda dplyr magrittr rjags rlang]; }; + NonCompart = derive2 { name="NonCompart"; version="0.7.0"; sha256="1cisq051azpybkj4wmg9k1xb4danyhl523cmjjvlqvvyxrkmp6pf"; depends=[]; }; NonNorMvtDist = derive2 { name="NonNorMvtDist"; version="1.0.2"; sha256="11xqdrx03q3anavyxpzb0hz6mcbdy252rzzjlpa2byfdlrfvn178"; depends=[cubature]; }; NonParRolCor = derive2 { name="NonParRolCor"; version="0.8.0"; sha256="1rh345vydbg31pbkagyb2xmsy8riam9zj7sc86m6dqvl19lglvg5"; depends=[colorspace doParallel foreach gtools pracma scales]; }; NonProbEst = derive2 { name="NonProbEst"; version="0.2.4"; sha256="1w2ihnwwdnxlnphyd26261lsxaknpi51c15rmn9m183djz9gsvdv"; depends=[caret e1071 glmnet Matrix sampling]; }; + NonlinearRDD = derive2 { name="NonlinearRDD"; version="0.0.4"; sha256="0jj8s8nvv5jcp74zlid0y5j4b1vl6cg4mxaw6m45wnaxansqfcq3"; depends=[copula lpcde lpdensity quantreg rddensity rdrobust Rfast]; }; NonlinearTSA = derive2 { name="NonlinearTSA"; version="0.5.0"; sha256="1z3fqw19kksadc31f1idrj37gzajrx91pprd07xdar7j6hddf4sn"; depends=[car minpack_lm tsDyn]; }; Nonpareil = derive2 { name="Nonpareil"; version="3.4.0"; sha256="130aags0pgry0d34mj1n4lavc8q43hls7c3jhmkr8k6vyg3ij372"; depends=[]; }; NormData = derive2 { name="NormData"; version="0.1"; sha256="122l1v4kmgbamix2gdbz2zdv4ng7zba05rxh1j4z0ffficmax4nq"; depends=[car doBy dplyr lmtest MASS openxlsx sandwich]; }; NormExpression = derive2 { name="NormExpression"; version="0.1.0"; sha256="1j4q8mb70ig40acfd9kfy12vxdvq3qpf53rxh47kkw8mywnd0449"; depends=[]; }; NormPsy = derive2 { name="NormPsy"; version="1.0.8"; sha256="13w4xjdjjg9mzmfaflc0gp306kazyvxshpj4vnl6gym3vpi9qax8"; depends=[lcmm]; }; - NormalLaplace = derive2 { name="NormalLaplace"; version="0.3-0"; sha256="0njgjdx2yvvy5jb5zn6zr7jdz5hck5bbkicv15z4ai4ibmckqjmh"; depends=[DistributionUtils GeneralizedHyperbolic]; }; + NormalLaplace = derive2 { name="NormalLaplace"; version="0.3-1"; sha256="1j113pfi4fynn9jwma6j6habi1xj76sydjbymr3shsagv7jz6pfg"; depends=[DistributionUtils GeneralizedHyperbolic]; }; NormalityAssessment = derive2 { name="NormalityAssessment"; version="0.1.0"; sha256="0r9a51z614si3b45g01lfgapmgc4smjf2hylgy5kvq8w0yh0w5y6"; depends=[dplyr DT ggplot2 rio rmatio shiny shinyalert shinyBS stringi stringr]; }; NostalgiR = derive2 { name="NostalgiR"; version="1.0.2"; sha256="0rpvwi815sdhaxqpji1y6g0vy8mkn5k6wci0a4jf54pkywwkwrwp"; depends=[txtplot]; }; NovelDistns = derive2 { name="NovelDistns"; version="0.1.0"; sha256="073969vk2vg58fx5h0v92m3zb1rdzlvv809vyahy3gxrj9n13lmh"; depends=[AdequacyModel gsl rootSolve]; }; + NoviceDeveloperResources = derive2 { name="NoviceDeveloperResources"; version="1.0"; sha256="0gflyws6p868nwjq8wq523mn3k75220ihwp067ckgf805qsq6znb"; depends=[devtools]; }; Nozzle_R1 = derive2 { name="Nozzle.R1"; version="1.1-1.1"; sha256="0fanf7cl8dlb8iqw8ww03dd5s6mrpr97m2c511clqkaavbd0yzkp"; depends=[]; }; Numero = derive2 { name="Numero"; version="1.9.5"; sha256="0bii7d4hggdhid81a7scp1lwbw8pi0vh2j9cb3z8hfpp88j2g16j"; depends=[Rcpp]; }; NutrienTrackeR = derive2 { name="NutrienTrackeR"; version="1.3.0"; sha256="0s7ax1aqvlph92y0pfs5ji2b4fjig2ig2zcl5vlffcilwm4ccrpp"; depends=[ggplot2 shiny]; }; OAIHarvester = derive2 { name="OAIHarvester"; version="0.3-4"; sha256="0b5v275w0c7y073fgwiy966djrw6p1zggzqlywa2fsdn2p0aq56w"; depends=[curl xml2]; }; OBASpatial = derive2 { name="OBASpatial"; version="1.9"; sha256="13jx5f5piii9cys7xyhfwilyg87zsi632fscy8902mlhbgg7abkp"; depends=[cubature HDInterval invgamma LaplacesDemon modeest mvtnorm truncdist]; }; - OBIC = derive2 { name="OBIC"; version="3.0.0"; sha256="12153khmqp88kxrbdkhbwwxhcp3nmi64xa1rmq6b702qp4c5m534"; depends=[checkmate data_table]; }; + OBIC = derive2 { name="OBIC"; version="3.0.1"; sha256="0z2xsyd2x647zv3drzsgrc6sflqyirmd2lkivf7jszxaw49jpa5l"; depends=[checkmate data_table]; }; OBL = derive2 { name="OBL"; version="0.2.1"; sha256="06icw1dnmavgaf51fs2nfi6582cpjrnlii1j9s62nwnwfnqw00v3"; depends=[dplyr forcats foreach forecast ggplot2 tibble]; }; OBMbpkg = derive2 { name="OBMbpkg"; version="1.0.0"; sha256="01wch8wwij3fd0jambk0hpkhlnp4ryrq8qnnr2w1iad9zssjyii5"; depends=[]; }; OBRE = derive2 { name="OBRE"; version="0.2-0"; sha256="1x1s46yffjr140mwx8amnh02k6g8x2gz5hz7lypiwxh0v7a8bm8w"; depends=[pracma]; }; + OBsMD = derive2 { name="OBsMD"; version="11.1"; sha256="0gxx3ja4ii5ql1ss43g23jrbwzg3193wchqmrdm0iq7g33mmd16y"; depends=[]; }; OCA = derive2 { name="OCA"; version="0.5"; sha256="19bayggqkzzpvn7ax8m8xgvz27a03iyybsxjz2vphf03dwsr8c5h"; depends=[mathjaxr]; }; - OCNet = derive2 { name="OCNet"; version="1.2.0"; sha256="1rkvx62aigms959fx1iw0kshqlzpix20r0r3pn5csjipwjbjj7ym"; depends=[adespatial fields igraph Rcpp rgl spam spdep]; }; + OCNet = derive2 { name="OCNet"; version="1.2.1"; sha256="1jd6389g0md8rch21j5sn183mbvwmqyak8pw5p8jxxyp1x4vj87s"; depends=[adespatial fields igraph Rcpp rgl spam spdep terra]; }; OCSdata = derive2 { name="OCSdata"; version="1.0.2"; sha256="0119c2i9k63mbz40lbbf7x59nf4yyhrmaynn0m0sh1h3jjbsiazc"; depends=[httr purrr usethis]; }; ODB = derive2 { name="ODB"; version="1.2.1"; sha256="0frkbl99ilpmppm4fm97lbkqhmjgcwlz9j5vh5nzzcsxrh8qwicn"; depends=[DBI RJDBC]; }; ODEnetwork = derive2 { name="ODEnetwork"; version="1.3.2"; sha256="0wicp0xxqq3jl0kjhc26iqpk8rwa9nv2aiwf18pkgnqxbyw6lgnp"; depends=[checkmate deSolve]; }; @@ -3437,7 +3507,7 @@ in with self; { OOS = derive2 { name="OOS"; version="1.0.0"; sha256="0jnj5y26rv0i2561mywcxb7aavmpq16ippq6rblb8jiqjd05nhib"; depends=[caret dplyr forecast furrr future ggplot2 glmnet imputeTS lmtest lubridate magrittr purrr sandwich tidyr vars xts zoo]; }; OPC = derive2 { name="OPC"; version="0.0.2"; sha256="01ljrczj9ds18x40fas4rsca4phqsjaz8w8nvbr7xprf4fp8zpcj"; depends=[MASS]; }; OPDOE = derive2 { name="OPDOE"; version="1.0-10"; sha256="04z944i4f3i0cjnxh32wf7n2dfyynnvkz4lxdkn90flam2np58yv"; depends=[crossdes gmp mvtnorm nlme orthopolynom polynom]; }; - OPI = derive2 { name="OPI"; version="2.11.0"; sha256="1y0z6kcvc8v1rk6fbi3j6sknd6wkfddlby49vapkp112xqjcmjkw"; depends=[abind Rfast]; }; + OPI = derive2 { name="OPI"; version="2.11.1"; sha256="0dddfnhzd10yn6n9s1kzzlzad0bgg3jkh6mh8dvdi3c5ps1pz4p0"; depends=[abind Rfast]; }; OPTS = derive2 { name="OPTS"; version="0.1"; sha256="0h382gcjq2f4qm63xnqvhjvxyn9w01dzx8964fk6cm2izhw04bk2"; depends=[changepoint cvTools MASS]; }; OPTtesting = derive2 { name="OPTtesting"; version="1.0.0"; sha256="1d5pkvrzz5hvr764kyliyba5mgix9y340gdcvc0d0si41rz12r91"; depends=[quantreg rootSolve RSpectra]; }; ORCME = derive2 { name="ORCME"; version="2.0.2"; sha256="1pm8ajj24qqj2fir0gjzq5f4mfpl1cnj6fm2z5qg6g3sbnm57ayk"; depends=[Iso]; }; @@ -3455,11 +3525,12 @@ in with self; { OSTE = derive2 { name="OSTE"; version="1.0"; sha256="0l8whr883g3jp5ckgxr4zf9vj055jrjb7pfraacd15smnrbl0v5d"; depends=[pec prodlim ranger survival]; }; OSsurvival = derive2 { name="OSsurvival"; version="1.0"; sha256="1fbxddbhppqlh49wgh2fldixar5mk7rywjbfvbpdb6fvpgn1sc4g"; depends=[]; }; OTE = derive2 { name="OTE"; version="1.0.1"; sha256="0jvvrrfhpc5kibbxrd5r4dj97jp5m072fxnkpcyz11gi65db3z4g"; depends=[randomForest]; }; - OTRselect = derive2 { name="OTRselect"; version="1.1"; sha256="007wnad6ka3d5hx9l537m6cvk9qlf0lirrz54yy665szyprpqy27"; depends=[lars survival]; }; + OTRselect = derive2 { name="OTRselect"; version="1.2"; sha256="02aslqz8k10jglxwifn8sm1y3cg10vaq6dd5n15s4nrvcfg53180"; depends=[lars survival]; }; OTUtable = derive2 { name="OTUtable"; version="1.1.2"; sha256="1sm037ihm12xyp7ns5f0c1psflvm1aj3xnsj5nzh2rsjn35hvd6h"; depends=[]; }; OTclust = derive2 { name="OTclust"; version="1.0.6"; sha256="00609z2fp3ijqid7yjgh045xz038h5jl7i1k2kww3kfpcf40mhzs"; depends=[class ggplot2 magrittr RColorBrewer Rcpp]; }; OTrecod = derive2 { name="OTrecod"; version="0.1.2"; sha256="1w3w6vsp5v2sccpn0zzjiwcnwmgcindh7wnsnf90qprvjwlys7mw"; depends=[dplyr FactoMineR mice missMDA ompr ompr_roi party plyr proxy rdist ROI ROI_plugin_glpk StatMatch vcd]; }; OUwie = derive2 { name="OUwie"; version="2.10"; sha256="19bh0vb7azxpzrjw2829gcjcq91fnzb5ybhkp3fsvg9xccmjq9dg"; depends=[ape corpcor geiger igraph interp lhs nloptr numDeriv paleotree phangorn phylolm phytools RColorBrewer]; }; + OVL_CI = derive2 { name="OVL.CI"; version="0.1.0"; sha256="17ksnsj68snxwm5ibjq3zchmybs7a3zq9ack0blhi4cbsx7xd5ds"; depends=[ks]; }; OVtool = derive2 { name="OVtool"; version="1.0.3"; sha256="1ghfbvnfl092g0kikgjghgf0l1y7ihqykssfvvfi6q6pgzl8kz4y"; depends=[Amelia devtools dplyr EnvStats ggplot2 ggrepel glue magrittr metR progress purrr rlang survey tibble tidyselect twang varhandle]; }; OWEA = derive2 { name="OWEA"; version="0.1.2"; sha256="05h3aj074manlwnlzqp023zkql6gmsm9p1nfs6zki7ifdd83wj7m"; depends=[gtools MASS shiny]; }; Oarray = derive2 { name="Oarray"; version="1.4-9"; sha256="04jng89s19rd8lbjm76wm4p4ggkffwnsa5qa60c4lwn2rj89a8a1"; depends=[]; }; @@ -3470,7 +3541,7 @@ in with self; { OenoKPM = derive2 { name="OenoKPM"; version="2.2.1"; sha256="0ppp8ijzgv6qvgjl7cnnp1zkcqnyx4h6gyk1f1qskr9izbz84sv6"; depends=[ggplot2 minpack_lm openxlsx]; }; Ohit = derive2 { name="Ohit"; version="1.0.0"; sha256="132d4drc2phw9ppxnczb1ycdg3dv085k8p6bcaj3v866j0hfxjgb"; depends=[]; }; OkNNE = derive2 { name="OkNNE"; version="1.0.1"; sha256="10kkg6n6fsqm1kir1ay96br1m8adykarmp57bnw900fiblqqa2i0"; depends=[FNN]; }; - OlinkAnalyze = derive2 { name="OlinkAnalyze"; version="3.5.1"; sha256="0zykprc6z8z8j08yk3jxr2i4bf5zkl0aab7y0dg0g1m3cnzf40vf"; depends=[broom car dplyr emmeans forcats generics ggplot2 ggpubr ggrepel lme4 lmerTest magrittr readxl rlang rstatix stringr tibble tidyr tidyselect zip]; }; + OlinkAnalyze = derive2 { name="OlinkAnalyze"; version="3.6.0"; sha256="0nf8ni1i3qdmvwz0qalm8qsjb31s361b573n45y3qjf4g5hssg87"; depends=[broom car dplyr emmeans forcats generics ggplot2 ggpubr ggrepel lme4 lmerTest magrittr readxl rlang rstatix stringr tibble tidyr tidyselect zip]; }; OlympicRshiny = derive2 { name="OlympicRshiny"; version="1.0.0"; sha256="17caq517hqd89qvlsmirrcb7l9ny55rqyfrwhx037s30005mxq9f"; depends=[config dplyr forcats ggplot2 golem shiny shinybusy shinythemes summarytools]; }; OmegaG = derive2 { name="OmegaG"; version="1.0.1"; sha256="1aihcrgml67rvnx9vpnq2nnbc79kicw4ks1fradsa36ykkdz6b1g"; depends=[]; }; OmicKriging = derive2 { name="OmicKriging"; version="1.4.0"; sha256="08frr38yf5d0l3zwkbq9465xrbyzsn8sx9icqc3yvfnxrkhrpzig"; depends=[doParallel foreach irlba ROCR]; }; @@ -3490,14 +3561,14 @@ in with self; { OneStep = derive2 { name="OneStep"; version="0.9.2"; sha256="06gnw364p74nnb9rx3ghyfavd02xmnvzy94hzdwgxqs86z30b2gz"; depends=[fitdistrplus numDeriv]; }; OneTwoSamples = derive2 { name="OneTwoSamples"; version="1.1-0"; sha256="0qa5v3c1f5mckvgmw8zbxqkk1q8k8dig1xg9k8pfyvfxqjard1ny"; depends=[]; }; OpVaR = derive2 { name="OpVaR"; version="1.2"; sha256="1923p60yzh8fycwl1fwy01r7ml5yx0kx01ckhgii7slm4cachf5f"; depends=[actuar evmix MASS pracma ReIns tea truncnorm VineCopula]; }; - OpenCL = derive2 { name="OpenCL"; version="0.2-2"; sha256="0gxzda615f67nbljancb8kixzdzkjsy8i0345mlnmlr8kqv4qyhw"; depends=[]; }; + OpenCL = derive2 { name="OpenCL"; version="0.2-10"; sha256="0nkf1rfplzpwf722xiswvvjqla0aysaga5g6r1whx6ksy21xbhpi"; depends=[]; }; OpenImageR = derive2 { name="OpenImageR"; version="1.3.0"; sha256="0j15kwhjazr35yqs9lhw0pfqmrd9rm75gs160dn3xcyc3nw2is56"; depends=[jpeg lifecycle png R6 Rcpp RcppArmadillo shiny tiff]; }; OpenLand = derive2 { name="OpenLand"; version="1.0.2"; sha256="02d1dflcbjvm9hgvsm5gpc3s0n0njf4w3224yqk9nc0i49nw01fi"; depends=[circlize dplyr ggplot2 gridExtra networkD3 raster tidyr]; }; OpenML = derive2 { name="OpenML"; version="1.12"; sha256="0ij4mnbfkckidv9f414fclyhrbbkgmpz5zsjiqa3zlckr3pfaxg7"; depends=[backports BBmisc checkmate curl data_table digest httr jsonlite memoise stringi XML]; }; - OpenMx = derive2 { name="OpenMx"; version="2.21.8"; sha256="1vvlb9q3w6i6g7kf0r5jnrlmdxskh3rbfss90icand046rl37qdz"; depends=[BH digest lifecycle MASS Matrix Rcpp RcppEigen RcppParallel rpf StanHeaders]; }; + OpenMx = derive2 { name="OpenMx"; version="2.21.11"; sha256="1k3i82higil43w4pryg1ghpswa8vxmc28dcv60gvkmmjrnwp098m"; depends=[BH digest lifecycle MASS Matrix Rcpp RcppEigen RcppParallel rpf StanHeaders]; }; OpenRepGrid = derive2 { name="OpenRepGrid"; version="0.1.14"; sha256="1gy06cyjb50673jb9548c9v37im4hsm245r7rwhx280q9fsn17ws"; depends=[abind colorspace crayon dplyr igraph openxlsx plyr psych pvclust rgl scales stringr tidyr XML]; }; OpenRepGrid_ic = derive2 { name="OpenRepGrid.ic"; version="0.6.1"; sha256="1h6n44szm5fa04fsnq0yvqp3m8djxsh5v3y409hzjgvb90vjzmyz"; depends=[dplyr DT formattable igraph magrittr openxlsx RColorBrewer reshape2 rintrojs scales shiny shinyBS shinycssloaders shinydashboard shinydashboardPlus shinyFeedback shinyjs shinythemes shinyWidgets stringr tidyr tidyverse withr]; }; - OpenSpecy = derive2 { name="OpenSpecy"; version="1.0.4"; sha256="0hzfzmy8251im31h3l5lvd9hc5qqqx38rlg82w51nxk4z7yar043"; depends=[caTools data_table digest glmnet hyperSpec imager jsonlite osfr plotly shiny signal yaml]; }; + OpenSpecy = derive2 { name="OpenSpecy"; version="1.0.6"; sha256="0wi3rq3lq96936dw7il86wfk6554kfcp2dvx0ma3n8gbx6wz6m0i"; depends=[caTools data_table digest glmnet hyperSpec imager jsonlite osfr plotly shiny signal yaml]; }; OpenStreetMap = derive2 { name="OpenStreetMap"; version="0.4.0"; sha256="0iq3y3331rjppc8nfx9krrrfybyn1spwfp15hf3vz8mnmcg86dkf"; depends=[ggplot2 raster rJava sp]; }; OpenTreeChronograms = derive2 { name="OpenTreeChronograms"; version="2022.1.28"; sha256="0si5aaami2x705fmzp9357h1nwhdm3sb829cbvf7zfyicqyaihkg"; depends=[ape geiger knitcitations paleotree plyr rotl stringr taxize treebase usethis]; }; Opportunistic = derive2 { name="Opportunistic"; version="1.2"; sha256="0kaj11ziij1v65l972x4kbr7vzkx4dwa27ymabiip4dg57a976wr"; depends=[]; }; @@ -3516,7 +3587,7 @@ in with self; { OptimalSurrogate = derive2 { name="OptimalSurrogate"; version="1.0"; sha256="1kw87h6im3s1xzj0va22w0av67s0qz59vmf36lkh2mi5x1mi7gws"; depends=[MASS]; }; OptimalTiming = derive2 { name="OptimalTiming"; version="0.1.0"; sha256="1mchb7wdk1v56la30ivi40aq6zma64lrdb94d64d0s7x67m8315w"; depends=[mstate survival]; }; OptionPricing = derive2 { name="OptionPricing"; version="0.1.2"; sha256="0c4pq9qzbnqsfgdqq29vnkxjcb5six4xfj2djv05zw8qnyvhaljg"; depends=[]; }; - OralOpioids = derive2 { name="OralOpioids"; version="1.2.0"; sha256="1hy7wllsv72lf4jlbijq6yazp75nzml3aanby4rfp1gfmmx19sv6"; depends=[dplyr forcats ggplot2 magrittr openxlsx plyr purrr readr readxl reshape2 rlang rvest stringr tidyr xml2]; }; + OralOpioids = derive2 { name="OralOpioids"; version="2.0.1"; sha256="0rp15jdcd7k5150wq92fz3l4rgz5wqzn0fcadp5h6i8wwwxxj16b"; depends=[dplyr jsonlite magrittr openxlsx plyr purrr readr reshape2 rlang rvest stringr tidyr xml2]; }; Orcs = derive2 { name="Orcs"; version="1.2.3"; sha256="0b2h0vyvp6hnp9i03c8yxfhrlbdq0akdlw2ik0k5c09wfiq7amq6"; depends=[bookdown knitr lattice latticeExtra plotrix Rcpp remotes sf sp terra]; }; OrdCD = derive2 { name="OrdCD"; version="1.1.2"; sha256="1wg4sxirzp8r91qzzvrx4yashg1f574ayaxbviy8hdca3iydfl1j"; depends=[bnlearn gRbase igraph MASS Matrix]; }; OrdFacReg = derive2 { name="OrdFacReg"; version="1.0.6"; sha256="16mavsmp6d8rfmimmp5ynwyzir0gycpg8rhd8cwanlrndyclqlpv"; depends=[eha MASS survival]; }; @@ -3533,14 +3604,15 @@ in with self; { OxyBS = derive2 { name="OxyBS"; version="1.5"; sha256="11l3gm0jvw993jb13f6kpv77m6z0d1jswscma2v28qzkw053r3dc"; depends=[]; }; PAC = derive2 { name="PAC"; version="1.1.4"; sha256="0h7381mr3jgzl7fi6v7amgmkf5agpkgy068c6ysgh3adlwsh6gs6"; depends=[dplyr ggplot2 ggrepel igraph infotheo parmigene Rcpp Rtsne]; }; PACLasso = derive2 { name="PACLasso"; version="1.0.0"; sha256="1qzzymhfsjy8mk0r0xpd5h4wrx4wk8gq3vi6fnawkq5xkrg26rld"; depends=[lars limSolve MASS penalized quadprog]; }; - PACVr = derive2 { name="PACVr"; version="0.9.4"; sha256="0sj5ibqaw452lncxxbm6xkgmmh9ny6hx4b9hppzwglpgk6vvb5f3"; depends=[BiocGenerics Biostrings genbankr GenomicAlignments GenomicRanges IRanges optparse RCircos]; }; - PAFit = derive2 { name="PAFit"; version="1.2.5"; sha256="07n27g2yy2lskna7qa4j6am3prdcwfnx98ppvcarsxgzvywz0scv"; depends=[ggplot2 igraph knitr magicaxis mapproj MASS network networkDynamic plyr RColorBrewer Rcpp VGAM]; }; + PACVr = derive2 { name="PACVr"; version="1.0.6"; sha256="1a31byfjjfqqz47s3mj52g20an42cy0s2rdjw697plpvx2hch9fl"; depends=[Biostrings dplyr GenomicAlignments GenomicRanges IRanges logger RCircos read_gb]; }; PAGWAS = derive2 { name="PAGWAS"; version="2.0"; sha256="0bz47ivd32kx1amgqllqbxyyvj773q7wasgk924hmibabiixa8nx"; depends=[foreach lars mnormt]; }; + PAICE = derive2 { name="PAICE"; version="1.0.1"; sha256="1qnyg5p62xryifjnbc2z5yxy4s5fszxf713cgaisds96wjqvzx8a"; depends=[]; }; PAMhm = derive2 { name="PAMhm"; version="0.1.2"; sha256="0k0n3ni0ypcizri39v76x1vv7hlxlmbpfi7w81yxy9inz7zz4zfw"; depends=[cluster heatmapFlex plyr R_utils RColorBrewer readmoRe readxl robustHD]; }; PAMmisc = derive2 { name="PAMmisc"; version="1.11.6"; sha256="0x0pirzcxjkx5p3mqf3xn3a7ng5dah3z9pcrlkaj7d44y08kygj3"; depends=[dplyr geosphere ggplot2 hoardr httr lubridate magrittr ncdf4 PamBinaries purrr RcppRoll rerddap rjson RSQLite scales seewave suncalc tuneR xml2]; }; PAMpal = derive2 { name="PAMpal"; version="1.0.0"; sha256="0mr4c7ckw05mh5lmr0qhpas98122yn257gip6w2hwrcyziy5sc4v"; depends=[data_table dplyr gam geosphere ggplot2 knitr lubridate manipulate PamBinaries PAMmisc purrr reticulate rlang RSQLite seewave signal stringr tidyr tuneR xml2]; }; PAMscapes = derive2 { name="PAMscapes"; version="0.5.3"; sha256="1r3p352mb0zqgqs6xp717j7in8s883l6rq82cyc8mi63a6cp99dp"; depends=[data_table dplyr geosphere ggplot2 hoardr httr lubridate magrittr ncdf4 PAMmisc purrr readr rlang scales sf tdigest tidyr]; }; PANACEA = derive2 { name="PANACEA"; version="1.0.1"; sha256="0pq5kq0i87yrdfs6id2lc6gg4dqsa07fsas13yc8jw6bd9lcf6rh"; depends=[DBI igraph org_Hs_eg_db reshape2]; }; + PANPRSnext = derive2 { name="PANPRSnext"; version="1.2.0"; sha256="1s9kv58af7hj65qxcnrsfjrh8xfqhm5m4kpg279li5b4g4cpnqx9"; depends=[gtools Rcpp RcppArmadillo]; }; PAS = derive2 { name="PAS"; version="1.2.5"; sha256="175p3bnpnhknfsc29hri0l2ipz1x6qcxs2bq7awns8lccam466r2"; depends=[glmnet]; }; PASSED = derive2 { name="PASSED"; version="1.2-2"; sha256="000ha6q6cl79741rcri8pxirlps43vym1qwhkxwwpqz0b1dnbaws"; depends=[betareg rootSolve]; }; PASWR = derive2 { name="PASWR"; version="1.3"; sha256="1p4896r4k6c0aaag4mwds2azp41amf726c4v62zca92cpsay4nml"; depends=[e1071 lattice MASS]; }; @@ -3553,11 +3625,10 @@ in with self; { PBIR = derive2 { name="PBIR"; version="0.1-0"; sha256="1br53bxqp2bhljph2a0nvdlxf695iknymgwy2drfc7pm383w1ma1"; depends=[cmprsk survival]; }; PBImisc = derive2 { name="PBImisc"; version="1.0"; sha256="18gjp66q6l0w6vsgm6d5sjgpa906z1gyyp6yf58lq5vyg1bnfmcl"; depends=[lme4 Matrix]; }; PBNPA = derive2 { name="PBNPA"; version="0.0.3"; sha256="1wmgcmspilfv6pjy7696j2xmq8m41p27plnr1qr0fnzyz66pf37m"; depends=[metaRNASeq]; }; - PBRF = derive2 { name="PBRF"; version="1.0.0"; sha256="1ibwywgbxnxcb3z2kl2bgh7fz512nhgy2zcdym67asp76c6rkqg6"; depends=[]; }; - PBSadmb = derive2 { name="PBSadmb"; version="1.1.4"; sha256="11dxy6rdhwairymigwqxd51hxz82011sx0gzzphcs6i4gr0c54c3"; depends=[PBSmodelling]; }; - PBSddesolve = derive2 { name="PBSddesolve"; version="1.13.3"; sha256="0cjnbmvyzzz659csjrv7fx3xbxb9070223qm7cg6ns3l6sn2adc4"; depends=[]; }; - PBSmapping = derive2 { name="PBSmapping"; version="2.73.2"; sha256="0glkqcgykhcnh0si0j3f12kapb2w1fglgfll0jrnjikajwvj3fpm"; depends=[]; }; - PBSmodelling = derive2 { name="PBSmodelling"; version="2.68.8"; sha256="07qaqb6sd1idmryxlz0gxb4d3apzql9vp4b16nazba08ksx0y7wf"; depends=[XML]; }; + PBSadmb = derive2 { name="PBSadmb"; version="1.1.6"; sha256="1745j4rli5j5sml5rfb0wr93xm2hflg2bwlzch5yx2smrh0wysbb"; depends=[PBSmodelling]; }; + PBSddesolve = derive2 { name="PBSddesolve"; version="1.13.4"; sha256="0wa7h93449lr8shkrjy49h53vwzk2zy1h0c9ddkhh1axd978ms39"; depends=[]; }; + PBSmapping = derive2 { name="PBSmapping"; version="2.73.4"; sha256="1g4gnqwjq45xfrymmyn89zn2gry1l142cc084qp5pv2f400qfmnc"; depends=[]; }; + PBSmodelling = derive2 { name="PBSmodelling"; version="2.69.3"; sha256="117xsm1p6cynbax9p6mcz5y5jzzcxfrfbvkzcb7i5gdlqnw5mpp2"; depends=[XML]; }; PBtDesigns = derive2 { name="PBtDesigns"; version="1.0.0"; sha256="0kcxqca3vgn3xz451prl42d7fwh4i4bd7divmj4p5rvrmyj023ni"; depends=[MASS]; }; PCADSC = derive2 { name="PCADSC"; version="0.8.0"; sha256="0pwkmmnsw3c6ch2k5wdc8ig71994pdp79v3a5aa9n9aq55a8c2ir"; depends=[ggplot2 Matrix pander reshape2]; }; PCAmatchR = derive2 { name="PCAmatchR"; version="0.3.3"; sha256="0ycplivjiz2w3wiqnqga0ywwdbd9mxqzm92k3bjva8009jxxijax"; depends=[]; }; @@ -3577,8 +3648,8 @@ in with self; { PCRedux = derive2 { name="PCRedux"; version="1.1-2"; sha256="1x3a4pdv54ppar9fjshk0avgpxvqsar4x7fgy9w0i76fgndr7qs5"; depends=[bcp changepoint chipPCR ecp fda_usc MBmca pbapply pracma qpcR robustbase segmented shiny zoo]; }; PCS = derive2 { name="PCS"; version="1.3"; sha256="0v9vczc9hml6mzxglh106a9f5gy3x5m471lkzaw3ps8z76sgrpyr"; depends=[multtest statmod]; }; PCSinR = derive2 { name="PCSinR"; version="0.1.0"; sha256="1z8yjryw3c43vc6fxcwiindmyq6r63pc1zr3aybwmys6mv697bb4"; depends=[]; }; - PCovR = derive2 { name="PCovR"; version="2.7.1"; sha256="1lvj3kf4pnvbr7lk3kzvh72akga49zx25b3w7nq24925s129sqx1"; depends=[GPArotation MASS Matrix ThreeWay]; }; - PDE = derive2 { name="PDE"; version="1.4.3"; sha256="1xii4kc5lskgg58grp6qls01xgf5gib5yvxacm1pz6w3lp4hadwd"; depends=[tcltk2]; }; + PCovR = derive2 { name="PCovR"; version="2.7.2"; sha256="0fzs071wnrf84fah0nzzavjiqvch031xjsmlj6nj7cjrmy7p7mv1"; depends=[GPArotation MASS Matrix ThreeWay]; }; + PDE = derive2 { name="PDE"; version="1.4.7"; sha256="1nkgvcsg8yix76whcr9kn4glg0yh4n1nkp8kz0x2pzp3lra1fx2b"; depends=[tcltk2]; }; PDFEstimator = derive2 { name="PDFEstimator"; version="4.5"; sha256="1h64scfy7db8p8gyczrzhscfssk1cbzhr41z8jvs0n1d1xa2f982"; depends=[MultiRNG plot3D]; }; PDM = derive2 { name="PDM"; version="0.1"; sha256="1pbdy13ji9c6krgh2r1qgrzmf4hdmrdzylsr71n3hh5jq4n9xg8x"; depends=[jpeg]; }; PDMIF = derive2 { name="PDMIF"; version="0.1.0"; sha256="0mlc31f4z0k5xk1fil0hx5dcbm7afia74kxb7xmnx4jcblidxnd2"; depends=[diagonals ncvreg quantreg]; }; @@ -3597,14 +3668,15 @@ in with self; { PERMANOVA = derive2 { name="PERMANOVA"; version="0.2.0"; sha256="1lmnp1g1i1kqa30cvakkl8g2m2h5jl73qx8dy37kv62mv0knlg5m"; depends=[deldir MASS Matrix scales xtable]; }; PEkit = derive2 { name="PEkit"; version="1.0.0.1000"; sha256="023k4swypw8l4hglqxysd53c5f4fq9v3ibha9jm5kvyg3piw3a4p"; depends=[]; }; PEtests = derive2 { name="PEtests"; version="0.1.0"; sha256="053vnwbjyh197m3vvzgwl8xikl6dglln00r1jlpsj2w68h1kz4pi"; depends=[]; }; - PFIM = derive2 { name="PFIM"; version="5.0"; sha256="0qamdsavbz27zs3m98bpn6680wq8528r5hi1w6f4b49nfl1sbmdx"; depends=[Deriv deSolve filesstrings ggbreak ggplot2 gtable kableExtra knitr markdown Matrix pracma Rcpp rmarkdown scales]; }; + PFIM = derive2 { name="PFIM"; version="6.0.2"; sha256="0zwhm4dc8jgrzinsmdjszqq54hp56qhi1y6xdmqmjsqmf7sz1i72"; depends=[Deriv deSolve devtools ggplot2 inline kableExtra knitr Matrix pracma Rcpp rmarkdown scales stringr]; }; PGEE = derive2 { name="PGEE"; version="1.5"; sha256="1qcxbqnbpplnfjy83nm9fj9y4abzgbxnsggzx7ix3vb9qs18cdwh"; depends=[MASS mvtnorm]; }; PGM2 = derive2 { name="PGM2"; version="1.0-1"; sha256="03282pcq7gw47awc2mxjsbz6w3zpqjhqd7fzg8la4p00cd0vvmr4"; depends=[]; }; PGRdup = derive2 { name="PGRdup"; version="0.2.3.9"; sha256="0z2nnjlaazrmfnjmwhsmhp8h3ifgykmsy6znqvcl77v9565libz9"; depends=[data_table ggplot2 gridExtra igraph stringdist stringi]; }; - PH1XBAR = derive2 { name="PH1XBAR"; version="0.10.1"; sha256="0b9g2mz0vcaqmbpm0cisr6c9l2bk5y3bn0s9096dl5fq9hyma7na"; depends=[forecast mvtnorm pracma]; }; + PH1XBAR = derive2 { name="PH1XBAR"; version="0.11.1"; sha256="08dvcbzvb80zcfxlp6xdps2wg5wmjq9p14ybi1wy9fk82b6gqp0d"; depends=[forecast mvtnorm pracma]; }; PHENIX = derive2 { name="PHENIX"; version="1.3.1"; sha256="1gd9ycrwawi81al4f5v559km1112giwqnwvvk8ynj4kdb5bqpyq4"; depends=[ppcor SuppDists]; }; + PHENTHAUproc = derive2 { name="PHENTHAUproc"; version="0.9.9"; sha256="0xw4smyyx399j1d4mk45c0q1my0847jn67w0lijjy8h4fwz8v599"; depends=[lubridate rlang terra]; }; PHEindicatormethods = derive2 { name="PHEindicatormethods"; version="2.0.1"; sha256="0ypvzg7y7wh167pzblvjjah911kj29w2fr8ycqk03wf8ch9fay1c"; depends=[broom dplyr purrr rlang tibble tidyr tidyselect]; }; - PHInfiniteEstimates = derive2 { name="PHInfiniteEstimates"; version="2.9"; sha256="19w57m9jz60d5yjzchlwgi3aj8ckxp4jy790z601b6jl2a208qc6"; depends=[coxphf lpSolve nph Rdpack survival]; }; + PHInfiniteEstimates = derive2 { name="PHInfiniteEstimates"; version="2.9.5"; sha256="1j00bb0jk912bkv6yhwnx1f2nr2bw72z9c5y4xby1mphljz059b7"; depends=[coxphf lpSolve nph Rdpack survival]; }; PHSMM = derive2 { name="PHSMM"; version="1.0"; sha256="1phfdzhfdhyry11plfd8a2lcn3rg02m84brw7fp2lg3hsxjg5ch7"; depends=[Rcpp RcppArmadillo]; }; PHYLOGR = derive2 { name="PHYLOGR"; version="1.0.11"; sha256="1fq2ny093b4881nwgj6wr8qd5g4dcxb51sdx40ndyxxpq6jj16n9"; depends=[]; }; PHclust = derive2 { name="PHclust"; version="0.1.0"; sha256="18jby44hnk132l0wviqb0wi6nxkg1xisqjh8cxpss2rhwah3l4h1"; depends=[]; }; @@ -3624,21 +3696,23 @@ in with self; { PLFD = derive2 { name="PLFD"; version="0.2.0"; sha256="0w6d3sy4cnn7sj5d2fbn510gc3y6hipd006jnyvkariaqwlh3fa0"; depends=[mathjaxr Rcpp RcppArmadillo]; }; PLIS = derive2 { name="PLIS"; version="1.2"; sha256="08l16s3vncgk2vvcy3zswprcmx46qljbw9wlw2dhr3rinl62ci8x"; depends=[]; }; PLMIX = derive2 { name="PLMIX"; version="2.1.1"; sha256="05mnzsi7y71cvg50qx8hp4m31gqslldl34k41r1f8npyb6ldpdca"; depends=[abind coda foreach ggmcmc ggplot2 gridExtra gtools label_switching MCMCpack PlackettLuce pmr prefmod radarchart rankdist rcdd Rcpp reshape2 StatRank]; }; - PLNmodels = derive2 { name="PLNmodels"; version="1.0.4"; sha256="0ipx01zs3vh318hdqrvm4y59q0jdzkysr39amxmydv5ld8lx5cky"; depends=[corrplot dplyr future future_apply ggplot2 glassoFast gridExtra igraph magrittr MASS Matrix nloptr purrr R6 Rcpp RcppArmadillo rlang tidyr torch]; }; + PLNmodels = derive2 { name="PLNmodels"; version="1.1.0"; sha256="07ax6qhj9n55mrs2s4ddzzxy69xw8pvf0phvha1vncnal6314qwy"; depends=[corrplot dplyr future future_apply ggplot2 glassoFast gridExtra igraph magrittr MASS Matrix nloptr purrr R6 Rcpp RcppArmadillo rlang tidyr torch]; }; PLORN = derive2 { name="PLORN"; version="0.1.1"; sha256="0x6rvg63mqc451rw0hpz1pjafdyxwraqhnj8cgbwjknhm5k4m1bl"; depends=[ggplot2 kernlab]; }; PLRModels = derive2 { name="PLRModels"; version="1.4"; sha256="1jpnxsjj3gj72my1q4mswqxpil7vbqfv5gwd51fvx1z8vbdvkwa8"; depends=[]; }; PLSiMCpp = derive2 { name="PLSiMCpp"; version="1.0.4"; sha256="05pldxlszz4kcdqmzli31jgjd9v6sb3r89yaijc1i83c36ximarx"; depends=[crayon purrr Rcpp RcppArmadillo]; }; + PLindleyROC = derive2 { name="PLindleyROC"; version="0.1.0"; sha256="0k7vkk6c6y0larvp5bm0f8dzafjs7g1s2m7kla6h612jhkqpngwl"; depends=[]; }; PLmixed = derive2 { name="PLmixed"; version="0.1.7"; sha256="1kn9w8xr9y1lnxa5hv95q3hipr7shs8pnhr6nr88v4rskgvvhffm"; depends=[lme4 Matrix numDeriv optimx]; }; PLordprob = derive2 { name="PLordprob"; version="1.1"; sha256="1g23h3121g9csr85falm6vgzbva42wz3skhfr2rxmvlc3ca4afyp"; depends=[mnormt]; }; PLreg = derive2 { name="PLreg"; version="0.4.1"; sha256="1fa8h0igxqgdfapiz0z80ll2m3nqvxw4qjcrw4knrg7ladjdicwl"; depends=[BBmisc EnvStats Formula gamlss_dist GeneralizedHyperbolic nleqslv VGAM zipfR]; }; PMA = derive2 { name="PMA"; version="1.2-2"; sha256="1fdx6prsh9a4abqbzns9fwkpqs262736fqrcxb7r75swdcis9wil"; depends=[]; }; PMAPscore = derive2 { name="PMAPscore"; version="0.1.1"; sha256="174ll5gr2csy4r5iz92zq6jqq7yfcpiyyigzklgmzpah5v0k5854"; depends=[clusterProfiler glmnet maftools org_Hs_eg_db pROC survival survminer]; }; PMCMR = derive2 { name="PMCMR"; version="4.4"; sha256="05n13pp5yff6pzk4ry07crddfaj3jlglrd1vkcnacyd8jpaxkd77"; depends=[]; }; - PMCMRplus = derive2 { name="PMCMRplus"; version="1.9.8"; sha256="1wqx5nikhpjsqnn7lgb2zy949sxmq7n3phlaix70as0zky534scg"; depends=[BWStest gmp kSamples MASS multcompView mvtnorm Rmpfr SuppDists]; }; + PMCMRplus = derive2 { name="PMCMRplus"; version="1.9.10"; sha256="0w0zxlq80n673zlrfw46qzidwshc6rxsqka6pahbr816zabzi0yq"; depends=[BWStest gmp kSamples MASS multcompView mvtnorm Rmpfr SuppDists]; }; PMwR = derive2 { name="PMwR"; version="0.19-3"; sha256="11pmhhyk39wc9qcgy16gavyqrrh5wkzvnk85jb9mnr9g673ljgfi"; depends=[datetimeutils fastmatch NMOF orgutils textutils zoo]; }; - PNADcIBGE = derive2 { name="PNADcIBGE"; version="0.7.3"; sha256="0w166p38s1sx7d0dm83iksm7vc56lgxkqcvgg65h43nx3zdgrvvp"; depends=[dplyr httr magrittr projmgr RCurl readr readxl survey tibble timeDate]; }; + PNADcIBGE = derive2 { name="PNADcIBGE"; version="0.7.4"; sha256="0x23dffl7mjbqqddzby63lcglbh7l07igwlfjwb5lp64fw6lhmai"; depends=[dplyr httr magrittr projmgr RCurl readr readxl survey tibble timeDate]; }; PNAR = derive2 { name="PNAR"; version="1.6"; sha256="18nq5g2vsc8xy4l1km710l2v8frw3wwpn4yx23s3xczqd8hj9wfw"; depends=[doParallel foreach igraph nloptr Rfast Rfast2]; }; - PNSIBGE = derive2 { name="PNSIBGE"; version="0.1.9"; sha256="0lh5nkcyn46pgmabm22i44rhcc1b618d50b6qdawyswhcvi41hg0"; depends=[dplyr httr magrittr projmgr RCurl readr readxl survey tibble timeDate]; }; + PNDSIBGE = derive2 { name="PNDSIBGE"; version="0.1.0"; sha256="1v2mvq1ks2lwhr8wqa9sp1lxpvsaiibh01y6zc617zmgscrhwi4k"; depends=[dplyr httr magrittr projmgr RCurl readr readxl survey tibble timeDate]; }; + PNSIBGE = derive2 { name="PNSIBGE"; version="0.2.0"; sha256="1v7i9666613avz0p4ydlwizrwh11mqw7l9dg0sbg44ialr3wza4d"; depends=[dplyr httr magrittr projmgr RCurl readr readxl survey tibble timeDate]; }; PNWColors = derive2 { name="PNWColors"; version="0.1.0"; sha256="1phplnclkficfv8s6wsyrckk4ixzbayiy5iix6dddg40485l9nyj"; depends=[]; }; POCRE = derive2 { name="POCRE"; version="0.6.0"; sha256="0kni15dr7qhldn68w51mzg6pyk95dx717qy0f9230hpbg97791hz"; depends=[EbayesThresh ggplot2 pracma]; }; POD = derive2 { name="POD"; version="1.2.0"; sha256="1xg2xzfmzg2qrwd02xy4fwsfmccigw6lm5266z6w1kxzb7p7bbw0"; depends=[]; }; @@ -3648,8 +3722,8 @@ in with self; { POMS = derive2 { name="POMS"; version="1.0.1"; sha256="1ndry1csq7zsccdwd8nq9x4b9zq5j2ffykmhm38ari8n0zxxyrwy"; depends=[ape data_table MASS phangorn phylolm XNomial]; }; POMaSPU = derive2 { name="POMaSPU"; version="1.0.0"; sha256="0jz3jgzdykv0xvfw3ix0hbs32as6dp7p5v8bj5nddknx10d0siya"; depends=[MASS matrixStats Rcpp RcppArmadillo]; }; POSSA = derive2 { name="POSSA"; version="0.6.4"; sha256="02lla3q3wkiw78b5v7pf7ali7s2l6aqc1bbaqf35zyihgiz3598g"; depends=[data_table]; }; - POSTm = derive2 { name="POSTm"; version="1.2"; sha256="1fckd5c4hdviwy1b7cmwv8nqkaipfv838yjfsyacj8hxlzdlwlhj"; depends=[ape CompQuadForm]; }; - POSetR = derive2 { name="POSetR"; version="1.1.1"; sha256="1p1j6zjgpl3018ym7h8k4ih5bffz2n809h5wm073l85bcm9isznr"; depends=[igraph Rcpp Rdpack]; }; + POSTm = derive2 { name="POSTm"; version="1.3"; sha256="0hnphl0lrblhj83z1ivcn7dnx2igvvbwzfkljbjdag59yqyjx7x0"; depends=[ape CompQuadForm]; }; + POSetR = derive2 { name="POSetR"; version="1.1.4"; sha256="00qz9z9mwbgvxh7775il2avrxdn116l8v31z3bksifvy81krw95a"; depends=[igraph Rcpp Rdpack]; }; POT = derive2 { name="POT"; version="1.1-10"; sha256="1gd76xc4gs7v3gcqaidnchm60gd2w7x0p6sqrvy38sfr4wbazz1s"; depends=[]; }; POUMM = derive2 { name="POUMM"; version="2.1.7"; sha256="0pwa97sffb571nfqnbc35dj9lr8z07wjsjnwibj9dhj2dr5b2cfp"; depends=[adaptMCMC ape coda data_table foreach ggplot2 lamW Rcpp]; }; POV = derive2 { name="POV"; version="0.1.4"; sha256="0mqhi410rwpgr6x5h57wqg0f5k01vva0c280zlfpmf8php121x7j"; depends=[broom formula_tools]; }; @@ -3668,7 +3742,7 @@ in with self; { PQLseq = derive2 { name="PQLseq"; version="1.2.1"; sha256="0lyynzvv7n1igzfrw52021bnxprqcm2hjxmlrsxkx4898ca46g60"; depends=[doParallel foreach Matrix Rcpp RcppArmadillo]; }; PRANA = derive2 { name="PRANA"; version="1.0.4"; sha256="1i9gwz4dlsz9w0z3d995w6s6f10gwvwhyb77agbmmwym1fd2k2wh"; depends=[dnapath dplyr minet robustbase]; }; PRDA = derive2 { name="PRDA"; version="1.0.0"; sha256="1lklwfakd54ylm5gizq36ng6498c2izapsz9yz2a95cjf860rr23"; depends=[MASS pbapply Rcpp RcppArmadillo]; }; - PRECAST = derive2 { name="PRECAST"; version="1.6.2"; sha256="1v8qajxfk6ry40d3hq2k3xgxbibpcq1nxagjdhr7k8znpim5m5c2"; depends=[colorspace cowplot dplyr DR_SC ggplot2 ggpubr ggthemes GiRaF gtools MASS Matrix mclust patchwork pbapply purrr Rcpp RcppArmadillo scales scater Seurat]; }; + PRECAST = derive2 { name="PRECAST"; version="1.6.3"; sha256="14mvvxx2780l7sl0kwsldgvzi9xpn9vbq0kdnqr5x0b8qk8mwg8m"; depends=[colorspace cowplot dplyr DR_SC ggplot2 ggpubr ggthemes GiRaF gtools MASS Matrix mclust patchwork pbapply purrr Rcpp RcppArmadillo scales scater Seurat]; }; PREPShiny = derive2 { name="PREPShiny"; version="0.1.0"; sha256="0zsg07y6nhp2lma3pdz8xd981y3mh8k21il5jv0inma1d1xr4g3f"; depends=[dplyr psycho rmarkdown shiny]; }; PRIMAL = derive2 { name="PRIMAL"; version="1.0.2"; sha256="04fn0c10v9ai7vrrd4qr84rid3x42wq749rn5p1i6nkvmjv3dnhs"; depends=[Matrix Rcpp RcppEigen]; }; PRIMME = derive2 { name="PRIMME"; version="3.2-5"; sha256="01wdj270a6j9j2mvmvxd8rc9m70qfjmvf2w9sm7fqmiyvz555r0w"; depends=[Matrix Rcpp]; }; @@ -3677,7 +3751,7 @@ in with self; { PRISMA2020 = derive2 { name="PRISMA2020"; version="1.1.1"; sha256="0jhf1kgcc29b8gsb42b3d5hyfzsa13lz9qgs104ynrzld94kqqwf"; depends=[DiagrammeR DiagrammeRsvg DT htmltools htmlwidgets rio rsvg scales shiny shinyjs stringr webp xml2 zip]; }; PRISMAstatement = derive2 { name="PRISMAstatement"; version="1.1.1"; sha256="1vvab8h71g8c910s2h4d12qafqdncfzmsh5f1b4m79plpqi3s49z"; depends=[DiagrammeR]; }; PROBShiny = derive2 { name="PROBShiny"; version="0.1.0"; sha256="17p6pb8nwq36ha697f2lf8nwzj5cylmh8rdzyag49ks5hi9painb"; depends=[epitools LaplacesDemon rmarkdown rpivotTable shiny shinyMatrix]; }; - PROJ = derive2 { name="PROJ"; version="0.4.0"; sha256="1rqw28qqcyzla3ssif9jghvv0nyms9riabj2lxhlx1l3rbz0rsfx"; depends=[]; }; + PROJ = derive2 { name="PROJ"; version="0.4.5"; sha256="0iq33v6z0plz1q9vgsaa3lryfdc7xawny34r8bk65kx35a32zvxb"; depends=[]; }; PROMETHEE = derive2 { name="PROMETHEE"; version="1.1"; sha256="0r53mb9ndwm4yli3h50cfamsjzpq6b67g72mszm7lpbqpj58wqw6"; depends=[lpSolve]; }; PROSPER = derive2 { name="PROSPER"; version="0.3.3"; sha256="1wdrdqii7d4yfky6706n9xjmabnz99jjja1c80nbj3fp8idsbli5"; depends=[data_table]; }; PROreg = derive2 { name="PROreg"; version="1.2"; sha256="1kxadlgiknk4715rd6vfmcw03ll2n6n9c91g4y0lhynijryr04mb"; depends=[car fmsb Matrix matrixcalc numDeriv RColorBrewer rootSolve]; }; @@ -3688,7 +3762,7 @@ in with self; { PRROC = derive2 { name="PRROC"; version="1.3.1"; sha256="1m28h8pcd78049lz2qixhkcr9h5b3jik3maqzfbvq9y58z71i4a7"; depends=[]; }; PRSPGx = derive2 { name="PRSPGx"; version="0.3.0"; sha256="1vvclrp6h63l471qvgwkdhs52lrkapz0v90gwld89zwim6pnh7av"; depends=[bdsmatrix bigparallelr bigsnpr bigsparser bigstatsr gglasso GIGrvg glmnet lmtest Matrix matrixcalc MCMCpack mvtnorm propagate Rfast SGL]; }; PRSim = derive2 { name="PRSim"; version="1.4-4"; sha256="17aqydzv220q15mhn1sir5ly5wzmv7sx1ckmk9fwr97lnf0pdh09"; depends=[goftest lmomco mev splus2R wavScalogram]; }; - PReMiuM = derive2 { name="PReMiuM"; version="3.2.10"; sha256="000v6fqmh0v9747yvd8vfbfmic6jhpd5k9pj7yc0a8b0yw89xydp"; depends=[BH cluster data_table gamlss_dist ggplot2 plotrix Rcpp RcppEigen sf spdep]; }; + PReMiuM = derive2 { name="PReMiuM"; version="3.2.11"; sha256="0jxx7wcn790jvmxq3f82c28pykqvxwa6wgmvdkn7c20mmjlgh93l"; depends=[BH cluster data_table gamlss_dist ggplot2 plotrix Rcpp RcppEigen sf spdep]; }; PResiduals = derive2 { name="PResiduals"; version="1.0-1"; sha256="0mq16cs07hw5c9jj08vpgbb15xvjvz9h0npsbqphiibsb6ca5fwb"; depends=[Formula MASS rms SparseM]; }; PSAWR = derive2 { name="PSAWR"; version="0.1.0"; sha256="0qaaw6bxb4p9h1y6fykgn5g7bllr1x1zdp3p1idm3sk30zfpvp94"; depends=[dplyr httr tibble]; }; PSAboot = derive2 { name="PSAboot"; version="1.3.8"; sha256="1y0d5gglmzcnd0yvq33k1canjzhl62df9abgw1w08azm94arfh1q"; depends=[ggplot2 ggthemes Matching MatchIt modeltools party PSAgraphics psych reshape2 rpart TriMatch]; }; @@ -3704,28 +3778,29 @@ in with self; { PSS_Health = derive2 { name="PSS.Health"; version="1.0.2"; sha256="0vkg727rhh267vvcf8zkf5k6wm0k54vqysrsm4zc3sin3w1chnaf"; depends=[dplyr DT easypower EnvStats epiR ggplot2 ICC_Sample_Size kappaSize longpower plotly powerMediation powerSurvEpi presize pROC pwr pwr2 shiny shinycssloaders shinyFeedback shinyhelper writexl]; }; PSSIM = derive2 { name="PSSIM"; version="0.1.0"; sha256="144lh31b1c4ycq0wrgf9745q0c8b5sfnmrd0f7vwx95i86bzr3mj"; depends=[]; }; PSSMCOOL = derive2 { name="PSSMCOOL"; version="0.2.4"; sha256="0iyhs2sas08kjl6hd0y4n4rz4lvvvlrz3w3izl3may6mscykrciy"; depends=[dtt gtools infotheo phonTools]; }; - PST = derive2 { name="PST"; version="0.94"; sha256="0f28zrnlficbi9iil6wbh51k9mghpkz63hw05lpmlpx1yl5nd0a6"; depends=[RColorBrewer TraMineR]; }; + PST = derive2 { name="PST"; version="0.94.1"; sha256="0rd3mswcckgh5vfb1bpid9dki0yq0ph098jp2awnm21qzvx72va4"; depends=[RColorBrewer TraMineR]; }; PSW = derive2 { name="PSW"; version="1.1-3"; sha256="0ahm7rp795d7j88n15b3q0gl573p3g0krc7jd1zv87g4bsdc9b5x"; depends=[gtools Hmisc]; }; PScr = derive2 { name="PScr"; version="1.1"; sha256="0cbmb1z4iwxw82m3f3y5iyr2hd1mgqsrvn7ip4rmsqy3zakyh06s"; depends=[pracma survival VGAM]; }; PSinference = derive2 { name="PSinference"; version="0.1.0"; sha256="19y3pbb75rkgx9dlykrq6aa0pbn968d83bsl1d3qlnb06b6gncx6"; depends=[MASS]; }; - PStrata = derive2 { name="PStrata"; version="0.0.3"; sha256="05f63nqjn2140dhycq05d5hrw7d1c065lpg6js6plsx235jwmga8"; depends=[abind dplyr ggplot2 lme4 purrr rstan stringr]; }; + PStrata = derive2 { name="PStrata"; version="0.0.5"; sha256="1nzvspzihxwra0hzyc8cfnml19xz26dam23y2q09794dpg5a7pcf"; depends=[abind dplyr ggplot2 lme4 purrr rstan stringr]; }; PSweight = derive2 { name="PSweight"; version="1.1.8"; sha256="0vawkkgm72s17cjfww9175dyr100lxdv4gf35p2lz8wcnbsklnv5"; depends=[gbm ggplot2 lme4 MASS nnet numDeriv SuperLearner]; }; PTAk = derive2 { name="PTAk"; version="2.0.0"; sha256="1xnjils6i36mpzzg7lpi1bpq90mm4gwp4szk6fcg9i4dvkrznfki"; depends=[tensor]; }; PTE = derive2 { name="PTE"; version="1.7"; sha256="1azkrij4kfmvp03lnzm88gwgvz8g54jq94j0qg8ynxvyjzrppc98"; depends=[doParallel foreach survival]; }; PTERP = derive2 { name="PTERP"; version="1.0"; sha256="1mzb3lm1wrbya5lmgndrkz5arwpz5zr4gfl5bnvcbs0g74xlsa44"; depends=[MASS mvtnorm survival]; }; PTSR = derive2 { name="PTSR"; version="0.1.2"; sha256="0zwqw8zdp0p05nm64yg658iqfbj26n3v2py8r5m6g1sjispm5whf"; depends=[actuar extraDistr numDeriv SuppDists]; }; - PTXQC = derive2 { name="PTXQC"; version="1.0.17"; sha256="1d47fdsi1fzsrpz6vf6h0crlxsylcjajcscq3lqghq4lsrbypny4"; depends=[data_table ggdendro ggplot2 gridExtra gtable htmlTable knitr magrittr plyr R6 R6P RColorBrewer reshape2 rmarkdown rmzqc seqinr UpSetR xml2 yaml]; }; + PTXQC = derive2 { name="PTXQC"; version="1.1.0"; sha256="0wykb4sapnvfhwalbyhwc41058vlmsdb6bxivs3q5c1hji5cc71c"; depends=[data_table ggdendro ggplot2 gridExtra gtable htmlTable knitr magrittr plyr R6 R6P RColorBrewer reshape2 rmarkdown rmzqc seqinr UpSetR xml2 yaml]; }; PTwins = derive2 { name="PTwins"; version="0.1.1"; sha256="166mc7w52n9d3n72h5jvvhbki87prkils3yigdf57dn9pyixrd66"; depends=[]; }; PUMP = derive2 { name="PUMP"; version="1.0.2"; sha256="0q1yx46vfpdm5n5ci49aqfiiccv9g4dw6f2a8sn2m0b06r7kag0h"; depends=[dplyr future ggplot2 ggpubr glue lme4 magrittr mvtnorm purrr randomizr readr rlang stringr tibble tidyr tidyselect]; }; PUPAIM = derive2 { name="PUPAIM"; version="0.3.1"; sha256="1sypmlpjsdn2rm6pci64xv6ibixz43zhjaw0k8q9jp3cajbb11qh"; depends=[ggplot2 Metrics nls2]; }; PUPAK = derive2 { name="PUPAK"; version="0.1.1"; sha256="1274z53qclddww90qgnl9vwdnxv2p66lclmq9fixchnpgm9xc6qw"; depends=[ggplot2 Metrics nls2 segmented]; }; PUPMCR = derive2 { name="PUPMCR"; version="0.1.0"; sha256="0pbxqa1d5b5gjwqwan0rsigzv4dcgjqn8gnzgf3sjsvi0xwz956z"; depends=[colordistance readxl]; }; PUPMSI = derive2 { name="PUPMSI"; version="0.1.0"; sha256="04w2c783bbkfdqkxvwvrf3fk09hzswbkq7najcn456cz22241w9l"; depends=[ggplot2 Metrics minpack_lm nls2]; }; + PUlasso = derive2 { name="PUlasso"; version="3.2.5"; sha256="1lyf7x4sixpl74alns3kmr2iz10qmjz444gyqxgj5k4xqswgaz15"; depends=[doParallel foreach ggplot2 Matrix Rcpp RcppEigen]; }; PVAClone = derive2 { name="PVAClone"; version="0.1-6"; sha256="0fj5p3z2cwnyshrr4rq88wpij2xax5p4aq0x4p342kadx9d6x2ga"; depends=[coda dclone dcmle]; }; PVR = derive2 { name="PVR"; version="0.3"; sha256="0pcnazkiwmicr3k6k70r8skqk0pd46fcqhhxghawxjs4slgnygkj"; depends=[ape MASS splancs]; }; PVplr = derive2 { name="PVplr"; version="0.1.2"; sha256="1hrd2r3m2qy8r4wjacbhpqsmlchdjqk6iyydiy5k1ccrmv8da74a"; depends=[broom cluster dplyr forecast ggplot2 magrittr minpack_lm purrr rlang scales segmented stlplus tidyr zoo]; }; PWEALL = derive2 { name="PWEALL"; version="1.3.0.1"; sha256="1p6wq7khpzs6cw2chswp17bq383ppm6q2ia9p6y1gggrazsymdvg"; depends=[survival]; }; - PWEXP = derive2 { name="PWEXP"; version="0.4.1"; sha256="1dw3g8f105hjs2b975c4aijr7spphl3f1f9jfbfvjzh0a0hgph6f"; depends=[doSNOW fastmatch foreach segmented survival]; }; + PWEXP = derive2 { name="PWEXP"; version="0.4.3"; sha256="0nxnshm8mfd2wcgjg8dgjsnnragb3v0xy1nwfi0vnywsp408822r"; depends=[doSNOW fastmatch foreach segmented survival]; }; PWIR = derive2 { name="PWIR"; version="0.0.3"; sha256="05f4mj8id8ikfz63c8c1lkbxl7s1b2q5xri8iicn1xv2m3w89p2v"; depends=[bibliometrix igraph progressr]; }; PaLMr = derive2 { name="PaLMr"; version="0.1.4"; sha256="0aj8c2w27plcp3vj70ci742slqlkr0rirfz4hp2fb5bldwhhdcw1"; depends=[httr jsonlite]; }; PaRe = derive2 { name="PaRe"; version="0.1.12"; sha256="1axxmqnhw0aw1g3985ld5ahf6qk954g7xv1ddrdavvyh8601l7lv"; depends=[checkmate cli cyclocomp desc DiagrammeR DiagrammeRsvg dplyr git2r glue igraph lintr magrittr pak R6 rmarkdown rsvg stringr]; }; @@ -3747,6 +3822,7 @@ in with self; { PamBinaries = derive2 { name="PamBinaries"; version="1.8.0"; sha256="1l89vk9jhlfghk89945815ygwwdjmv5mkibb2cz7307vy6jl60ka"; depends=[dplyr ggplot2]; }; PanCanVarSel = derive2 { name="PanCanVarSel"; version="0.0.3"; sha256="06xkzg2kvyr6ivm1z71x2pk20j37h36sx6kf4kmc8q50cq73k9jl"; depends=[Matrix msm mvtnorm smoothmest]; }; PanJen = derive2 { name="PanJen"; version="1.6"; sha256="18cl9rls98v286kk6lyxxws3w59zpzgmqi5250gdgcf71xy2lhvm"; depends=[mgcv]; }; + Pandora = derive2 { name="Pandora"; version="23.12.0"; sha256="1my5whx937l7717qsb0xqg8q7dswjc4ph1rdpf288lmqjblwgmsn"; depends=[curl dplyr jsonlite magrittr openxlsx readODS readr readxl rlang yaml]; }; PanelCount = derive2 { name="PanelCount"; version="2.0.1"; sha256="07dn8a86q51gvy4xkqz2mfmqkc59cf4zcwcqrw366b791y5g182y"; depends=[MASS Rcpp RcppArmadillo statmod]; }; PanelMatch = derive2 { name="PanelMatch"; version="2.0.1"; sha256="07c2zghrb1ykq08qjkpc86j64b4w04kk0hxfdxr60bzsvgnb0kg3"; depends=[CBPS data_table ggplot2 igraph MASS Matrix Rcpp RcppArmadillo RcppEigen]; }; PantaRhei = derive2 { name="PantaRhei"; version="0.1.2"; sha256="0lv04aa70yd5gr0zfh2gmah4d4h3kw0lym6284akcvll8mhdi8dd"; depends=[]; }; @@ -3760,13 +3836,13 @@ in with self; { PartCensReg = derive2 { name="PartCensReg"; version="1.39"; sha256="0blzv57cbxqghkz4fc3plvrcw80g0kx17dzmajkfv598m1wm6hc8"; depends=[Matrix optimx ssym]; }; PartialNetwork = derive2 { name="PartialNetwork"; version="1.0.2"; sha256="1pn308cqwil0k674zc9bqxgxh052avjm2akhm1wm644labmi1vl3"; depends=[abind doParallel doRNG foreach Formula formula_tools Matrix Rcpp RcppArmadillo RcppEigen RcppNumerical RcppProgress]; }; Partiallyoverlapping = derive2 { name="Partiallyoverlapping"; version="2.0"; sha256="0pb0digyigqyzb0zqikgz002kqf1xprcjhxr62a7iqbzy1yycayf"; depends=[]; }; - PatientProfiles = derive2 { name="PatientProfiles"; version="0.4.0"; sha256="0ya7zk9a6v1hkai5vjdbf0jc86wxvxz8aqpzp2i1h5i0i89k6y2n"; depends=[CDMConnector checkmate cli DBI dplyr gt lubridate magrittr pillar rlang stringr tidyr]; }; + PatientProfiles = derive2 { name="PatientProfiles"; version="0.5.1"; sha256="0r1fa2i4l715qj76hl0a2b3ysmk260yh86hbk2fa1mdr8m48545w"; depends=[CDMConnector checkmate cli DBI dplyr gt lubridate magrittr pillar rlang stringr tidyr]; }; Patterns = derive2 { name="Patterns"; version="1.4"; sha256="12ci26i0ks23ff11g3pmsns5f3crnrac2hnlqc2pglhrv180m37r"; depends=[abind gplots igraph jetset lars lattice limma Mfuzz movMF nnls plotrix repmis SelectBoost tnet VGAM WGCNA]; }; PdPDB = derive2 { name="PdPDB"; version="2.0.1"; sha256="05aqg0rqrnlmvjxa32ms1vywgwhw5zlfkyf2ij0fn06rp8l2z3lv"; depends=[dendextend plyr tseries]; }; Peacock_test = derive2 { name="Peacock.test"; version="1.0"; sha256="0ypvwywipyh8lm8xkazsfjgjpvvyi2g8kid63qff11372p33m6xs"; depends=[]; }; PeakError = derive2 { name="PeakError"; version="2023.9.4"; sha256="07hidwjf0pgahdw12jlvv2cygfvizv1zjir49nmra01zm1yr5k62"; depends=[]; }; PeakSegDP = derive2 { name="PeakSegDP"; version="2017.08.15"; sha256="1ndf4d4ikcyqi0k51kil2jw777z4c1m4pda3dahrjmjyz0jhrhkw"; depends=[]; }; - PeakSegDisk = derive2 { name="PeakSegDisk"; version="2023.9.4"; sha256="164s72pmb3h3niwzbfgiyssly46p00mmjg4nv7182a476xgcznj2"; depends=[data_table]; }; + PeakSegDisk = derive2 { name="PeakSegDisk"; version="2023.11.27"; sha256="133ig07ah1hxzn3hlxhd3g1j5kizpsxf5z8h5d071gk7f9l3yy9c"; depends=[data_table]; }; PeakSegJoint = derive2 { name="PeakSegJoint"; version="2023.4.24"; sha256="0yak9dyy3a6jncgdh4p6q4xxc2pddb0zifs68ivmpq4gf38lksj3"; depends=[PeakError penaltyLearning]; }; PeakSegOptimal = derive2 { name="PeakSegOptimal"; version="2018.05.25"; sha256="0j39jzy4r0h787vs3klgbpcmb096ds3hzhvv5w3xs53kl0qkypj4"; depends=[penaltyLearning]; }; PearsonDS = derive2 { name="PearsonDS"; version="1.3.0"; sha256="1dap7f096ayp27pf6p9chc30sphd1hdivqn3yv7mgm0ar8w1qzyk"; depends=[]; }; @@ -3775,7 +3851,7 @@ in with self; { PenCoxFrail = derive2 { name="PenCoxFrail"; version="1.0.1"; sha256="0snjf8jxzyf30xj3wx9p6g073dqw592l1j1c6yxfg8y4kgzhzwq7"; depends=[Matrix Rcpp RcppArmadillo survival]; }; PenIC = derive2 { name="PenIC"; version="1.0.0"; sha256="0vcqawmbm8z6lkcxfq1b2png9viz5q669npbv0s7dn6smwhanlzz"; depends=[MASS Matrix numDeriv]; }; PepSAVIms = derive2 { name="PepSAVIms"; version="0.9.1"; sha256="0m4jrq6wcjy0k80gvrnm9f7kvi1ifx9182xfq0psyaxpj0ggvzij"; depends=[elasticnet]; }; - Peptides = derive2 { name="Peptides"; version="2.4.5"; sha256="1ld2xgrc6az2fqj4ib52z3kd6500mxyqcm5v9b5dz15pjbqgjgf1"; depends=[Rcpp]; }; + Peptides = derive2 { name="Peptides"; version="2.4.6"; sha256="199bbfcdmy8mipjchsyxwxa3jssy60n9n9j7hcsab30kwjyq22zm"; depends=[Rcpp]; }; PerFit = derive2 { name="PerFit"; version="1.4.6"; sha256="13917nvxii8pg69h1wcpmlv45sdrdldd3zxdrypr4mn456ff74k4"; depends=[fda Hmisc irtoys ltm MASS Matrix mirt]; }; Perc = derive2 { name="Perc"; version="0.1.6"; sha256="1nwbj56m7pxrg8dyv36501b0lvpq8gbhcr07vs4nps8n3rqwwg81"; depends=[]; }; PerfMeas = derive2 { name="PerfMeas"; version="1.2.5"; sha256="13yjk0kwpbsqwl056hzf0zj2br1mk4faqcn1whdfxmq348c14hjb"; depends=[graph limma RBGL]; }; @@ -3787,6 +3863,7 @@ in with self; { PersianStemmer = derive2 { name="PersianStemmer"; version="1.0"; sha256="1dpfkafijg7g7hzka93l1ymq5rcnjsfgvkvbpdx3vjnid05kh4v1"; depends=[]; }; PersomicsArray = derive2 { name="PersomicsArray"; version="1.0"; sha256="1d5gxd65b01m13rgbdhk6w3l43vqcbdk0s1pbgc8h6cnipj55z0i"; depends=[jpeg raster stringr tiff]; }; PesticideLoadIndicator = derive2 { name="PesticideLoadIndicator"; version="1.3.1"; sha256="109pasc3q0zwwp2pamx1pqz1rvhw269bnbqdh79xy77w82jpma15"; depends=[dplyr magrittr readxl rlang stringr]; }; + Petersen = derive2 { name="Petersen"; version="2023.12.1"; sha256="0wn3m34qr9nr0v3pp0yqi2z2hpnivgfn2dw5ajd4l32n136psv1h"; depends=[AICcmodavg bbmle BTSPAS formula_tools ggplot2 MASS Matrix msm numDeriv plyr reshape2 rlang SPAS stringr tidyr]; }; PetfindeR = derive2 { name="PetfindeR"; version="2.1.0"; sha256="1pb3mqv4pxl971j210m7vwhz9qqbhb7l5fpmb1vjwkc5hx11zh9l"; depends=[R6]; }; PhViD = derive2 { name="PhViD"; version="1.0.8"; sha256="038pw24sb8ja8pbbmj05rww6413i2ljybb2dxwgrpffv22aqawmc"; depends=[LBE MCMCpack]; }; PhageCocktail = derive2 { name="PhageCocktail"; version="1.0.3"; sha256="0lr1gnwpaqrf8ny5ssx2cjv8hi6q2ilmr7qif3jl9agh4w0nkp89"; depends=[bipartite factoextra readxl RJSONIO smerc stringr]; }; @@ -3799,10 +3876,11 @@ in with self; { PheVis = derive2 { name="PheVis"; version="1.0.4"; sha256="1anj079vdpfbkilbvk0b2b78qk87gc7lmivzl8syq6lb3dxkja2l"; depends=[dplyr ggplot2 glmnet knitr lme4 purrr randomForest Rcpp tidyr viridis zoo]; }; Phenotype = derive2 { name="Phenotype"; version="0.1.0"; sha256="0bfg2vk35hrfzmpjpnv3yhnsfr17505c49msbppqrrbpw5wgawy5"; depends=[lme4 tidyr]; }; PhenotypeSimulator = derive2 { name="PhenotypeSimulator"; version="0.3.4"; sha256="19c79kls6i1qpsk41lp8whva5in47m2wlr0v3ggw5bblp4fkd43m"; depends=[cowplot data_table dplyr ggplot2 Hmisc mvtnorm optparse R_utils Rcpp reshape2 snpStats zoo]; }; - Phi2rho = derive2 { name="Phi2rho"; version="1.0"; sha256="0lphg0hyzsr7mcchrv53rx8vvi0bd7hdbxk78qndjmb1mpy2f8b5"; depends=[Rmpfr]; }; + Phi2rho = derive2 { name="Phi2rho"; version="1.0.1"; sha256="14bbnpr4jpbmj914hg8782nkqr3mbp3xmywaiicb2w4wn6m6ljm0"; depends=[Rmpfr]; }; PhilipsHue = derive2 { name="PhilipsHue"; version="1.0.0"; sha256="03ghwi14jsz1ff70dl30p6w0d9v29kc70kip2bcinxm6v4l2q383"; depends=[httr pkgload purrr yaml]; }; PhitestR = derive2 { name="PhitestR"; version="0.2.0"; sha256="113f176q9kaghmqivqcg9l6zczx7dmawhybb8hwb2xpb0mhcgh4l"; depends=[fitdistrplus]; }; PhotosynQ = derive2 { name="PhotosynQ"; version="0.2.3"; sha256="10n06sfbwv5w96m3yv5ws7yddfv2n8pp1rc730870wiavl6cbn63"; depends=[getPass httr]; }; + PhyInsight = derive2 { name="PhyInsight"; version="0.1.0"; sha256="1r7y10g2vriy360f7j8agmjw5sgzm2vr2dypj8v78ssklb6apd08"; depends=[ape Biostrings bold DECIPHER]; }; PhySortR = derive2 { name="PhySortR"; version="1.0.8"; sha256="19426xjdii74qds0wmq5sa88zys81nyqb9lvf9pfihbjgrjr770a"; depends=[ape phytools]; }; PhylogeneticEM = derive2 { name="PhylogeneticEM"; version="1.6.0"; sha256="0a02m128hg55q50y6x11lw6yrmll2mzc2aa5byc8j2m492f769n5"; depends=[ape capushe foreach gglasso glmnet LINselect MASS Matrix plyr Rcpp RcppArmadillo robustbase]; }; PhysActBedRest = derive2 { name="PhysActBedRest"; version="1.1"; sha256="0ww9gcni9f0mwya1d3v45wazrss7lq8b75xcp4fb4kxwbh9s35kw"; depends=[chron lubridate stringr]; }; @@ -3822,10 +3900,10 @@ in with self; { PlotBivInvGaus = derive2 { name="PlotBivInvGaus"; version="0.1.0"; sha256="1qgrg43ry9carhn49zbm24gy77k1z7xnvgmr78xwg6b6j1v6xd8d"; depends=[plotly]; }; PlotContour = derive2 { name="PlotContour"; version="0.1.0"; sha256="0jjzrxmx1k1s8fyfs9m5a864pmvjh2bdklbhrc3nbhb0c7wd3h9z"; depends=[KernSmooth MASS]; }; PlotPrjNetworks = derive2 { name="PlotPrjNetworks"; version="1.0.0"; sha256="13kbyx2phxb3kss6l32f7krf4k5i350indlsmbhav686v0h3nsgp"; depends=[ggplot2 reshape2]; }; - PlotTools = derive2 { name="PlotTools"; version="0.2.1"; sha256="0gmi5bx2cgikk8plccpzh5miyc719afkriiqncdcbxf7aqrlvw4c"; depends=[]; }; + PlotTools = derive2 { name="PlotTools"; version="0.3.0"; sha256="1mm3cs1bgs4xscmk1k8nxq9zxddzj486fx4xnsmrc5mbr34ikgkg"; depends=[]; }; PoA = derive2 { name="PoA"; version="1.2.1"; sha256="0y8aqz1ainxdglxlfp9iqhvkmirpmc7dvwrcxz2l8lln86yrfqx6"; depends=[dplyr nloptr pracma tibble]; }; PoDBAY = derive2 { name="PoDBAY"; version="1.4.3"; sha256="1c1dmggcc8k4h56063r97gjavd44llc51j54qs1wck9zir414i8w"; depends=[dplyr ggplot2 Rcpp]; }; - PoPdesign = derive2 { name="PoPdesign"; version="1.0.3"; sha256="1xh58196p4ldgkzbs04rd2y4pv2qakik6kqsyddyy844ii2jxy69"; depends=[Iso knitr magick]; }; + PoPdesign = derive2 { name="PoPdesign"; version="1.0.4"; sha256="03nskqhc4xc40lww0q2gfd76rs8d5ypc571s9qhaibq7zslmy2h2"; depends=[Iso knitr magick]; }; PoSI = derive2 { name="PoSI"; version="1.1"; sha256="1xwlj8dibaik37z6vj9q9vawavi7d49906wvxdd4drjzxzapq4ng"; depends=[]; }; PogromcyDanych = derive2 { name="PogromcyDanych"; version="1.7.1"; sha256="0601n76nybvahd5xsghwbydc7gfcvj1qbpqhw06d4mzy97am7yl0"; depends=[dplyr SmarterPoland]; }; PoiClaClu = derive2 { name="PoiClaClu"; version="1.0.2.1"; sha256="1q89b0nypz2iivmgwg1nb1l7p285wy00s40j3qp8zc78ra1rjhyx"; depends=[]; }; @@ -3837,8 +3915,8 @@ in with self; { PoisBinOrdNor = derive2 { name="PoisBinOrdNor"; version="1.6.3"; sha256="02v9p82z85vkbhap2xn1rz8ibvvavsq8mgxxzicl749j4j9hcrmf"; depends=[corpcor GenOrd Matrix mvtnorm psych]; }; PoisNonNor = derive2 { name="PoisNonNor"; version="1.6.3"; sha256="1572ma1vk17gp2j9fvmbiaxmnmb773mw15z6mlcf1slgpayp1ldb"; depends=[BB corpcor MASS Matrix]; }; PoisNor = derive2 { name="PoisNor"; version="1.3.3"; sha256="1qi54fg2b1qc305kaihfwr2dkh3b3dd6l67yp9gi61n29kfxaqmf"; depends=[corpcor Matrix mvtnorm]; }; - PoissonBinomial = derive2 { name="PoissonBinomial"; version="1.2.5"; sha256="00cyrhi72kfbv7mdpmal1d2ws1lc3f6gfnfcxvf9hs74mcixm8jy"; depends=[Rcpp]; }; - PoissonMultinomial = derive2 { name="PoissonMultinomial"; version="1.0"; sha256="0h8486f5a74yik340ghg6mwb80sj38r02lzjsm0wvv07kb7zq9zp"; depends=[mvtnorm Rcpp RcppArmadillo]; }; + PoissonBinomial = derive2 { name="PoissonBinomial"; version="1.2.6"; sha256="1g77mkz63fl8hr3fhb71l0zywgg20djzjb88sjzpzsng73mz682h"; depends=[Rcpp]; }; + PoissonMultinomial = derive2 { name="PoissonMultinomial"; version="1.1"; sha256="0xbbs37i23f2swd15rxrw780q7cck9qz5yc4218knxgbj9p5pn8h"; depends=[mvtnorm Rcpp RcppArmadillo]; }; PoissonPCA = derive2 { name="PoissonPCA"; version="1.0.3"; sha256="0hdfnq427cywkpb34nj8kdjrc3yligzqag0729qnhh90si0ad036"; depends=[]; }; PolarCAP = derive2 { name="PolarCAP"; version="1.0.1"; sha256="1qqh3lnr8ny9rg17vv4qyx30fn1xrpqqbr4wqvqd64bqijlmn1s5"; depends=[countrycode tidyr]; }; PolicyPortfolios = derive2 { name="PolicyPortfolios"; version="0.3"; sha256="1syycldfzwymymhai0ifli93iv3p8p6xbyk25mvln6zgb43iind1"; depends=[dplyr ggplot2 ineq mgcv reshape2 vegan]; }; @@ -3849,6 +3927,7 @@ in with self; { PolycrossDesigns = derive2 { name="PolycrossDesigns"; version="1.1.0"; sha256="0qhjy4pkksg45c6i3axwcnqa5miz4ky52w9qngf1d1x62lckb29i"; depends=[]; }; PolynomF = derive2 { name="PolynomF"; version="2.0-5"; sha256="0asv2ggf5j4ihndv9fbd1y03iq1r599m4w9s42jn34wcfs67lvx8"; depends=[Rcpp]; }; Pomic = derive2 { name="Pomic"; version="1.0.4"; sha256="0xy5fgimbgqqac3n7akhwyvnrvd9fpvx9h8nk4spxrxc8x0km1w7"; depends=[]; }; + PoolBal = derive2 { name="PoolBal"; version="0.1-0"; sha256="11v615bri2ikdzrriidfzfn732465rfzjdw83rfncpaxgalchy59"; depends=[]; }; PoolDilutionR = derive2 { name="PoolDilutionR"; version="1.0.0"; sha256="0jmizwhc2f6igp6y06g08q4jbknbmcg51fq13y663jpf6fkdc8kz"; depends=[]; }; PoolTestR = derive2 { name="PoolTestR"; version="0.1.3"; sha256="0n9fihb2yc6jnxs1v0yq872pg7b1jd7lx7bwa9d1r8yv36haxzvr"; depends=[BH brms dplyr lme4 progress Rcpp RcppEigen rstan rstantools StanHeaders stringr]; }; PooledCohort = derive2 { name="PooledCohort"; version="0.0.1"; sha256="1zf8waqiw4282iyr30byd7czrdnf9rvp3mra6b7slqqs1z53lhr2"; depends=[glue]; }; @@ -3868,10 +3947,11 @@ in with self; { PottsUtils = derive2 { name="PottsUtils"; version="0.3-3"; sha256="165k4sjh3kqkb8bzi68wx00yl77yfbgs70fcbpzmsmcw4g4hdpzn"; depends=[miscF]; }; Power2Stage = derive2 { name="Power2Stage"; version="0.5-4"; sha256="1g4zrprbd5q1dn4jfq5c9ayss4p0ljhbsfr3h8h9sjbmcg62rsal"; depends=[cubature mvtnorm PowerTOST]; }; PowerNormal = derive2 { name="PowerNormal"; version="1.2.0"; sha256="1kryqcjvgwk0l4z3gqxdiz47mha3jw5583jlb9z7ml6v7cam06sm"; depends=[]; }; + PowerSDI = derive2 { name="PowerSDI"; version="0.1.3"; sha256="127pvjyflhyfpvchbwp4hcnk2grvk5xr2m588ysib07nhy37ka0p"; depends=[lmom lubridate nasapower]; }; PowerTOST = derive2 { name="PowerTOST"; version="1.5-4"; sha256="0k7vbgw0jswynwrammzzlc5radszjyqw9y5h3kh22bzpq4njvl1z"; depends=[cubature mvtnorm TeachingDemos]; }; PowerUpR = derive2 { name="PowerUpR"; version="1.1.0"; sha256="0bnkngdqhzhsbkzp4cxhgm8rzn83q4vm3fj2gkp7z4qznp37lh3j"; depends=[]; }; PrInDT = derive2 { name="PrInDT"; version="1.0.1"; sha256="0z03d87bnp2cf2k4m25il2wqglj53g5mdz7wpjzvsklnzsmxdbmy"; depends=[MASS party splitstackshape stringr]; }; - PracTools = derive2 { name="PracTools"; version="1.4"; sha256="1am672g4nqd8bpy1597hn945j36yphddscq2237np9nfv7rh8yx0"; depends=[dplyr geosphere ggplot2 usmap]; }; + PracTools = derive2 { name="PracTools"; version="1.4.2"; sha256="0swk59q6n4cbmynq5dmwzfz8rbxfhji4snn69g7xfd94c48p7q9g"; depends=[dplyr geosphere ggplot2 usmap]; }; PracticalEquiDesign = derive2 { name="PracticalEquiDesign"; version="0.0.3"; sha256="0jms5j9vg5g1llwkzjglj6k26wgj16jxdigllra4gjzk0azbgn9q"; depends=[dplyr ggplot2 numDeriv Temporal tidyr]; }; PreKnitPostHTMLRender = derive2 { name="PreKnitPostHTMLRender"; version="0.1.0"; sha256="1749cd734f4bf0n4068s2m617k6as8h9bwp44mm3la2xy3vjf5g1"; depends=[knitr rmarkdown XML]; }; PreProcess = derive2 { name="PreProcess"; version="3.1.7"; sha256="1fxzkmrj76mc94xdj7a0nq450021i1jxkigmh5jhrmamkp5581jf"; depends=[oompaBase]; }; @@ -3889,15 +3969,14 @@ in with self; { PriceIndices = derive2 { name="PriceIndices"; version="0.1.8"; sha256="1bhqbbdjmbpk9hy2mr1p3i617hp4mgvxzqvizlbdjp75ndkraqir"; depends=[caret dplyr ggplot2 lubridate reclin2 reshape strex stringr xgboost]; }; PriorGen = derive2 { name="PriorGen"; version="2.0"; sha256="0fa5f8m6sqcljfm5qla7spwvkpa2brp5l4kmrw2qa3xb4hn34l4j"; depends=[nleqslv rootSolve]; }; PrivateLR = derive2 { name="PrivateLR"; version="1.2-22"; sha256="0d142fa3wk7yadvs8jszajs6hq9m03p0j6h5r4pbw7j0d1l72hgc"; depends=[]; }; - ProAE = derive2 { name="ProAE"; version="0.2.12"; sha256="187p3i6gbcqycdl02n6nw529n8hkwd87qsy4d37bm0jgn21d2adj"; depends=[DescTools dplyr ggnewscale ggpattern ggplot2 ggtext gridExtra Hmisc magrittr]; }; + ProAE = derive2 { name="ProAE"; version="0.2.15"; sha256="02k8ndqhmqixqprj8jsc41lj4hrgjm13m6nc310057kdrpvi8lhv"; depends=[DescTools dplyr ggnewscale ggpattern ggplot2 ggtext gridExtra Hmisc magrittr]; }; ProDenICA = derive2 { name="ProDenICA"; version="1.1"; sha256="0g1ldrb6gsrgm09xjl0dynqaargkj1in8k39rnpanf4zzyrj5181"; depends=[gam]; }; ProFAST = derive2 { name="ProFAST"; version="1.2"; sha256="02a94qlxwa7499vx71vds8qlndnq6s52bmf9ac0ychdi86a0adfm"; depends=[AnnotationDbi biomaRt DR_SC gtools harmony irlba Matrix mclust nnet org_Hs_eg_db org_Mm_eg_db pbapply performance PRECAST Rcpp RcppArmadillo Seurat]; }; - ProFound = derive2 { name="ProFound"; version="1.14.1"; sha256="1p2mdy0z5p7as1x6vc572wjcl6f0acwgpvb39rmk2273kb1ldwz5"; depends=[celestial data_table FITSio foreach magicaxis RColorBrewer Rcpp]; }; ProPublicaR = derive2 { name="ProPublicaR"; version="1.1.4"; sha256="0rgfblkzx7rgv6q6k1vq47fxxdaa46hq5wv6vxal2bjj1v2qflav"; depends=[config dplyr httr lubridate stringr]; }; ProSGPV = derive2 { name="ProSGPV"; version="1.0.0"; sha256="1837p4vg1g4225rv55gaphma429j6pnfh078cxpv5ha2n0h1sfz3"; depends=[brglm2 glmnet MASS survival]; }; ProTrackR = derive2 { name="ProTrackR"; version="0.3.8"; sha256="02r8ax3wajk4fim15r6xkdzn4flw9a76a0gkd7sd7g2ym68rpcp2"; depends=[audio lattice signal tuneR XML]; }; ProbBayes = derive2 { name="ProbBayes"; version="1.1"; sha256="0bkbqyrmpy9swaxsl91w6iiw81znjf1lk4b0vqgn6wdnrir6gkmn"; depends=[ggplot2 gridExtra LearnBayes shiny]; }; - ProbBreed = derive2 { name="ProbBreed"; version="1.0.3"; sha256="1m8zlqnrszzjv2c8dpzvihjaw7wrw04xgbqg6a0nr6lzqn8wdjs0"; depends=[ggplot2 lifecycle rlang rstan]; }; + ProbBreed = derive2 { name="ProbBreed"; version="1.0.3.1"; sha256="04i46n23srds38fz3fxvdpbmf2639902a2p19ixkyk2yab82afdb"; depends=[ggplot2 lifecycle rlang rstan]; }; ProbMarg = derive2 { name="ProbMarg"; version="1.0.1"; sha256="02qc6c08vfg3inh14d3dzq28zgsgk9p7kb2ni9d14pcx5w9q6sji"; depends=[]; }; ProbSamplingI = derive2 { name="ProbSamplingI"; version="0.1.0"; sha256="1s72jvzayrscn5k43gwip28lax4k24b6piy1wmwvkmpf2xx57wiv"; depends=[]; }; ProbYX = derive2 { name="ProbYX"; version="1.1-0.1"; sha256="1arxk01c3aff7hfqjy1a398548jmz15hs70shh4a40qw2f9f995m"; depends=[rootSolve]; }; @@ -3909,7 +3988,7 @@ in with self; { ProfileLikelihood = derive2 { name="ProfileLikelihood"; version="1.3"; sha256="0yxcrxw3jb8bnwqh5f5d8bmm5jlkyxfld12zfyw3b1031zj1vh6i"; depends=[MASS nlme]; }; ProfoundData = derive2 { name="ProfoundData"; version="0.2.1"; sha256="1zqg821pv3i5nf76s7yppnmy13y14pj0l7rjhk50wlxrxdb53ibz"; depends=[DBI RNetCDF RSQLite settings sqldf zoo]; }; ProjectManagement = derive2 { name="ProjectManagement"; version="1.5.2"; sha256="04i1rz5dwgkgy6da12v3vhq3skqmnqlb3dry99hycjrfql0v4wsr"; depends=[igraph kappalab lpSolveAPI plotly triangle]; }; - ProjectTemplate = derive2 { name="ProjectTemplate"; version="0.10.3"; sha256="0h2szi0sp71s2gh104z2yknfs88b2c7z85q0zliy2qv6b5vj26mn"; depends=[digest tibble]; }; + ProjectTemplate = derive2 { name="ProjectTemplate"; version="0.10.4"; sha256="08idly6fdxhv2rx5s4309snvzpd9rhd5bq9vq4rw13hnvnbdzyya"; depends=[digest tibble]; }; ProjectionBasedClustering = derive2 { name="ProjectionBasedClustering"; version="1.2.1"; sha256="1l8j3n7d9vc7d5lb2fizq0aw8xh3ikh4ka4r3wwswk9a0mspjily"; depends=[deldir GeneralizedUmatrix geometry ggplot2 plotly Rcpp shiny shinyjs shinythemes vegan]; }; ProliferativeIndex = derive2 { name="ProliferativeIndex"; version="1.0.1"; sha256="03ipsbs8pfwr8wsx7j2y9c67ic4qcady7xpa47l8dr14ff63cfk7"; depends=[]; }; PrometheeTools = derive2 { name="PrometheeTools"; version="0.1.0"; sha256="09hrpybagl58vm22bhvpwb07s542hi4j15mqwwwyhi3dw0sn9xfy"; depends=[ggplot2]; }; @@ -3922,6 +4001,7 @@ in with self; { PsyControl = derive2 { name="PsyControl"; version="1.0.0.0"; sha256="1c5ml6s3c8kzf7p0mig84bmq40b0491ah713bm6jpy2s3nwnmafs"; depends=[irtoys ltm]; }; PsychWordVec = derive2 { name="PsychWordVec"; version="2023.9"; sha256="04dp4k0x2nmcfiqbyzirhr595lgishxh0qbymy210g96sghbrpf3"; depends=[bruceR cli corrplot data_table dplyr fastTextR ggplot2 ggrepel psych purrr qgraph reticulate rgl rsparse Rtsne stringr text text2vec vroom word2vec]; }; PtProcess = derive2 { name="PtProcess"; version="3.3-16"; sha256="1d5i847jy9i1llbfsdkqcjmiids3kjxnqscinrwqyv7mwb9ijk2z"; depends=[]; }; + PubChemR = derive2 { name="PubChemR"; version="1.1"; sha256="1bin09v18jlcdpq3jii4fk4pmh6wclrj8wr94lk1ajqnccpn304c"; depends=[dplyr httr magick magrittr png RCurl RJSONIO rsvg stringr tibble tidyr XML xml2]; }; PubMedMining = derive2 { name="PubMedMining"; version="1.0.0"; sha256="03lhml5jk69racmhlh6xa8j2rv8xb87vg6hr1caiqpd4kqg16n1q"; depends=[easyPubMed stringr]; }; PubMedWordcloud = derive2 { name="PubMedWordcloud"; version="0.3.6"; sha256="1wfp1fpr4an7psrwidx38brvhvghmvfsgjy4gdx81p1bdsdn2kw2"; depends=[RColorBrewer RCurl stringr tm wordcloud XML]; }; PublicationBias = derive2 { name="PublicationBias"; version="2.4.0"; sha256="1nwkp5czv31v57qzaahj18lkw557a48qcnwrz6lmz9hw74b52qm6"; depends=[dplyr ggplot2 glue lifecycle metabias metafor Rdpack rlang robumeta]; }; @@ -3946,7 +4026,7 @@ in with self; { QDComparison = derive2 { name="QDComparison"; version="3.0"; sha256="0y4494r3ixkyh58xr9md7c6xgcj1hgbjzfybvqqdbawjxvy5p38i"; depends=[]; }; QDiabetes = derive2 { name="QDiabetes"; version="1.0-2"; sha256="0r1rbg3azh7y4f5r9w0zj6qa658f63gyq6b007q514iivkzxib1c"; depends=[]; }; QF = derive2 { name="QF"; version="0.0.6"; sha256="0kvhvpj28293i65wh00jyz7fsbqk5q8x5i05bsk29n2rfrf627bl"; depends=[Rcpp RcppGSL]; }; - QFASA = derive2 { name="QFASA"; version="1.1.2"; sha256="1f61mm2wmpnzcr4c77gbpp41gf8lrfydar93zr9r95py9ds1p1h6"; depends=[boot bootstrap Compositional compositions dplyr futile_logger gamlss gamlss_dist MASS mvtnorm Rcpp RcppEigen Rsolnp TMB vegan]; }; + QFASA = derive2 { name="QFASA"; version="1.2.0"; sha256="1dhnfr4f5ij3irkragyllfjqisgm27phk40c9i539vm6046sc2w2"; depends=[boot bootstrap Compositional compositions dplyr futile_logger gamlss gamlss_dist MASS mvtnorm Rcpp RcppEigen Rsolnp TMB vegan]; }; QFRM = derive2 { name="QFRM"; version="1.0.1"; sha256="02fixwxc97lgdp1ajhk9z12qj1cdl79vyl6q3jy37i6k7xh9mdfl"; depends=[]; }; QGameTheory = derive2 { name="QGameTheory"; version="0.1.2"; sha256="0h3qkb0zg6km3s89bjnv9503hgcng4wfywfy1x5dsbj5azs9hs5w"; depends=[dplyr R_utils RColorBrewer]; }; QGglmm = derive2 { name="QGglmm"; version="0.7.4"; sha256="0ghvicz4ia1180byj28lmg49889hqhb94g1jrkhm6hnzgqbjnfmd"; depends=[cubature]; }; @@ -3967,7 +4047,7 @@ in with self; { QTLEMM = derive2 { name="QTLEMM"; version="1.4.1"; sha256="1d95zdqsdman9qb24p48safhdj9np9x6fzispgkv1igldb7302jc"; depends=[gtools mvtnorm]; }; QTLRel = derive2 { name="QTLRel"; version="1.14"; sha256="1brxlvqlcax0f5l0bnc9cirn2v6xwhb851cvzkwrgsxi4m7xn839"; depends=[gdata lattice]; }; QTOCen = derive2 { name="QTOCen"; version="0.1.1"; sha256="0wlbxk1rd56k02jf3pfzbx6xx5mmf6sb7gvds0067cvb7m42ghcr"; depends=[MatrixModels quantreg Rdpack rgenoud survival]; }; - QUALYPSO = derive2 { name="QUALYPSO"; version="2.2"; sha256="1836gl90021m47vs7ckb5s9sg1xzrdnwbrha8acrnwjsp17iyydv"; depends=[expm MASS Rfast]; }; + QUALYPSO = derive2 { name="QUALYPSO"; version="2.3"; sha256="1nbkbc5lcglrpp4k3jphdzqr9xl5kgdv6sg05ibdcwidn6bk3y5l"; depends=[expm MASS Rfast]; }; QWDAP = derive2 { name="QWDAP"; version="1.1.17"; sha256="1yq2xm5a1im8g65j89d6xqfbknlrpfh9lpm1ggmn5fw8wq4519ni"; depends=[CORElearn pls Rcpp RcppEigen]; }; QZ = derive2 { name="QZ"; version="0.2-3"; sha256="14szpp8yv315wjn4d35l858bzkv2pd4s720ib921wsvpgn3xfx5d"; depends=[Matrix]; }; Qapprox = derive2 { name="Qapprox"; version="0.2.0"; sha256="0mv3xfy847lqh95mpccjiw5jjbml7dwrna7i16532sdqcxaq4m02"; depends=[]; }; @@ -3976,7 +4056,7 @@ in with self; { Qindex = derive2 { name="Qindex"; version="0.1.5"; sha256="1186k9yapq6ax2y6pyk3pjhsdsnzifwv94mawgzw8fcsz7wq83q7"; depends=[matrixStats mgcv pracma rpart survival]; }; QoLMiss = derive2 { name="QoLMiss"; version="0.1.0"; sha256="00g1ykwlmc4w0bmzj0jg9ckr2bvkl8qcxd67wdc12alccqqd584v"; depends=[dplyr missMethods survival]; }; QregBB = derive2 { name="QregBB"; version="1.0.0"; sha256="0rihfd2542wpfv43115pkxh233ma1qwkwxivawqs9f4faypyi5mh"; depends=[quantreg]; }; - Qtools = derive2 { name="Qtools"; version="1.5.8"; sha256="0h5812q5w71840lrsidr5hpx11ypzwq2jq684xyr7y8g63kwzvrr"; depends=[boot conquer glmx gtools MASS Matrix np numDeriv quantdr quantreg Rcpp RcppArmadillo]; }; + Qtools = derive2 { name="Qtools"; version="1.5.9"; sha256="167c8mfj0if4j9m3rjbi1gnhwypq5ky297zyb437p42b3856qagi"; depends=[boot conquer glmx gtools MASS Matrix np numDeriv quantdr quantreg Rcpp RcppArmadillo]; }; QuClu = derive2 { name="QuClu"; version="1.0.1"; sha256="09fakiyj9kz9ac05jmis0zp9jmizvdyc8cid0js5xzm308dxnlsd"; depends=[]; }; QuESTr = derive2 { name="QuESTr"; version="0.1.1"; sha256="1vvvraqgy570dj86km4qpiax4a0zhfym94am0fn6ld43p3iixg02"; depends=[ggplot2 kernlab]; }; QuadRoot = derive2 { name="QuadRoot"; version="0.2.1"; sha256="1ixh4ikp8pqa7py4di9fgmi5rhjgsvh57j2f59g6xdcyl068c3g6"; depends=[]; }; @@ -3989,7 +4069,7 @@ in with self; { QuantileNPCI = derive2 { name="QuantileNPCI"; version="0.9.0"; sha256="043lkg1pyaja7a4f9lmcwrvdjpfly2z378s15snwnxj8vb5pgr38"; depends=[]; }; QuantumOps = derive2 { name="QuantumOps"; version="3.0.1"; sha256="0gl1myf7q444imyvsjvxiaxaahf0n0bsggwbd0z3az73l6yf1gjh"; depends=[]; }; Quartet = derive2 { name="Quartet"; version="1.2.5"; sha256="1chbn80y04hhcii1b58s7l1vak85ihdpl5q833mszrqili5zrmb1"; depends=[ape Rcpp Rdpack Ternary TreeTools viridisLite]; }; - QuickJSR = derive2 { name="QuickJSR"; version="1.0.7"; sha256="14wq7qymzrdbg3mhm4gk3vx1dr4yx8di8i2b10as4knnzr1w4q9i"; depends=[jsonlite R6 Rcpp]; }; + QuickJSR = derive2 { name="QuickJSR"; version="1.0.9"; sha256="12a0m57kwn2k9j5k6vl8hb10081rydpz9rczc9hccdj9ky9wiv0k"; depends=[jsonlite R6 Rcpp]; }; QurvE = derive2 { name="QurvE"; version="1.1"; sha256="1i1cmwndi8vkl2hs06mlad53l1q19fmrg32vciyllvv3s9r45mgz"; depends=[doParallel dplyr drc DT foreach ggh4x ggnewscale ggplot2 ggpubr kableExtra knitr labeling magrittr minpack_lm plyr RColorBrewer readxl rmarkdown scales shiny stringr tidyr]; }; R_cache = derive2 { name="R.cache"; version="0.16.0"; sha256="14cja0d78mzipb94cwgdl00k5r7awjclzxl30c77j6jpc68l0lvq"; depends=[digest R_methodsS3 R_oo R_utils]; }; R_devices = derive2 { name="R.devices"; version="2.17.1"; sha256="02cwdhb9m97gxi4pki4kasc5j3a12r7yzsychzzk9h0ijc1mfziv"; depends=[base64enc R_methodsS3 R_oo R_utils]; }; @@ -4000,7 +4080,7 @@ in with self; { R_oo = derive2 { name="R.oo"; version="1.25.0"; sha256="1vxy8yw4yblb3vgl64yh0b6zf1d51rnc2c23kmyyw629fxhr1cdq"; depends=[R_methodsS3]; }; R_rsp = derive2 { name="R.rsp"; version="0.45.0"; sha256="192x8cvna1j0sx37xh3ha8bjjyx39pn5wnxzn5gs3z5j93a4d055"; depends=[digest R_cache R_methodsS3 R_oo R_utils]; }; R_temis = derive2 { name="R.temis"; version="0.1.3"; sha256="1qa381fv1hxd1fv9d22772aibiia6m2ycm69znjy3ah2w986hjfh"; depends=[crayon explor FactoMineR igraph NLP slam SnowballC stringi testthat tm tm_plugin_alceste tm_plugin_europresse tm_plugin_factiva tm_plugin_lexisnexis wordcloud]; }; - R_utils = derive2 { name="R.utils"; version="2.12.2"; sha256="0dl8rc7s7vg4g2pkmrwwqx7dkm02096jk439x4s0cm21hsmg2g7y"; depends=[R_methodsS3 R_oo]; }; + R_utils = derive2 { name="R.utils"; version="2.12.3"; sha256="03640a1v8jk9k9s5xirdia9lngb53gh4p9gyj2j82cx2jmxfgmkl"; depends=[R_methodsS3 R_oo]; }; R0 = derive2 { name="R0"; version="1.3-1"; sha256="1bf6f3hijhpwqfpaqdbh9hzy85yjmwxfjssj1bpihl3dql1kv3ad"; depends=[MASS]; }; R1magic = derive2 { name="R1magic"; version="0.3.4"; sha256="03sx0lr3yaycvs1cklwamhdy4fbxnp3wizwvmd4szg9irlyj536p"; depends=[]; }; R2Addhaz = derive2 { name="R2Addhaz"; version="0.1.0"; sha256="1xaqbzq2chsgkg1gc163fq8qcgzq9wwn2bm4mwvc31ay0gg4f3xi"; depends=[ahaz caTools pracma Rdpack survival zoo]; }; @@ -4010,9 +4090,9 @@ in with self; { R2HTML = derive2 { name="R2HTML"; version="2.3.3"; sha256="12qg9rp1j26h2f48dfg5k9jds26ycacv3f3ymk686ks43hd1hzja"; depends=[]; }; R2MLwiN = derive2 { name="R2MLwiN"; version="0.8-8"; sha256="0gik3n95469c4cdqam3a37smcf77arxac0d8ryd2xf9nq1zw6nlk"; depends=[broom coda digest doParallel foreach foreign lattice Matrix memisc R2WinBUGS texreg tibble]; }; R2OpenBUGS = derive2 { name="R2OpenBUGS"; version="3.2-3.2.1"; sha256="0689aqa034xkbyy46m3sjanjkxrii4ma1crm5qw5kaqbx7dg153c"; depends=[boot coda]; }; - R2ROC = derive2 { name="R2ROC"; version="1.0.0"; sha256="1yb3fsnvaxbzvk5z61vblsdppkbacfh09c165pd9ryxb5d1yf539"; depends=[]; }; + R2ROC = derive2 { name="R2ROC"; version="1.0.1"; sha256="0xmzsd5rbfidypkxcp8jf9afa7l4r70h627gcz4y4j688n110piw"; depends=[]; }; R2SWF = derive2 { name="R2SWF"; version="0.9-8"; sha256="1nlb2fshc5g53yqbq92z899mv9rknwah0p0s2l5r0rzp3v2np5yd"; depends=[sysfonts]; }; - R2WinBUGS = derive2 { name="R2WinBUGS"; version="2.1-21"; sha256="0k8k214x712vjj2k1am4zzf6scccs3b98ysiz4lwxpzm818wp1ps"; depends=[boot coda]; }; + R2WinBUGS = derive2 { name="R2WinBUGS"; version="2.1-22"; sha256="0yc1s7ccz9vghpavs92mj9q759jmaprap2w277qjqmf4qybl1mxf"; depends=[boot coda]; }; R2admb = derive2 { name="R2admb"; version="0.7.16.3"; sha256="1sv20hkgz3vvqkwzj7i2xn7sb8skzhdl7jnrk85m6zza65917f32"; depends=[coda lattice]; }; R2jags = derive2 { name="R2jags"; version="0.7-1"; sha256="0si2f0lmnpjcsmy54k51kwj1fkx24dshiidv46h8j2xjq1hp429v"; depends=[abind coda R2WinBUGS rjags]; }; R2sample = derive2 { name="R2sample"; version="1.1.0"; sha256="18v7i0h4jbnyd08c24sr8fydk209fp76hc2k7yivva616m5c4s2d"; depends=[ggplot2 microbenchmark Rcpp shiny]; }; @@ -4023,13 +4103,13 @@ in with self; { R62S3 = derive2 { name="R62S3"; version="1.4.1"; sha256="0g01izg77spn79xqwva2gzrvk66i20xlb789wl5rgcz7pz7gpjd2"; depends=[data_table]; }; R6DS = derive2 { name="R6DS"; version="1.2.0"; sha256="0ai1yqfhn634vm88waxdb6j24vwcna29gdqzdrwm0nxwf7l6g0m3"; depends=[R6]; }; R6P = derive2 { name="R6P"; version="0.3.0"; sha256="18qy69zwyzp27fiqlplcjh0034d2pn9dhnfkraarh4jxnbi7masm"; depends=[collections dplyr purrr R6 stringr tibble tidyr]; }; - R6causal = derive2 { name="R6causal"; version="0.8.0"; sha256="0p6mhni9cy0ap9a701aqzdwl6bmqv646c9c2qc1n0zydnj0lg78h"; depends=[causaleffect data_table dosearch igraph MASS R6]; }; + R6causal = derive2 { name="R6causal"; version="0.8.2"; sha256="1x03pasia34jh65wqzps5zrnag8r19ih0dh02vs1pv85zyi68x0p"; depends=[causaleffect cfid data_table dosearch glue igraph MASS R6]; }; RABR = derive2 { name="RABR"; version="0.1.1"; sha256="1ckh0cw5xaqbzx8f7i6lsbspblfm0mmmadaifmln2rz3vr0hf1f4"; depends=[asd cubature data_table doParallel foreach ggplot2 multcomp multxpert survival]; }; RAC = derive2 { name="RAC"; version="1.5.5"; sha256="0ar2vbckfr26slbibbbcx409c8mw338x4apmxs7by6prnlwr6fpx"; depends=[matrixStats plotrix raster rstudioapi sp]; }; RADstackshelpR = derive2 { name="RADstackshelpR"; version="0.1.0"; sha256="0j2vazbji8xqb8xkd9jrpi10iqj30rvkdjfs4snavl9nsbra99yf"; depends=[ggplot2 ggridges gridExtra vcfR]; }; RAFS = derive2 { name="RAFS"; version="0.2.3"; sha256="00s7k5liqklri0di2yawzilxcp047x0mq9l7grqr1dshhzyv2rms"; depends=[fastcluster MDFS splitTools]; }; RAINBOWR = derive2 { name="RAINBOWR"; version="0.1.33"; sha256="1rzi0hys891qwfdfbckpk12ahg7cv9jx9p9n8hdgkwk2jva4qynq"; depends=[ape cluster expm gaston here htmlwidgets MASS Matrix MM4LMM optimx pbmcapply pegas R_utils Rcpp RcppEigen Rfast rrBLUP stringr]; }; - RALSA = derive2 { name="RALSA"; version="1.3.5"; sha256="16zq764qks8qbj5adzfdp0agg8p33q7znyn4png0qb3ighn751yg"; depends=[data_table DT foreign ggplot2 Hmisc openxlsx r_import rclipboard readr rstudioapi shiny shinydashboard shinyFiles shinyjs stringi stringr]; }; + RALSA = derive2 { name="RALSA"; version="1.3.7"; sha256="0jjvdawl6p07qc6s363pgfxjrzj565gdmws467070qylsh4rglm3"; depends=[data_table DT foreign ggplot2 Hmisc openxlsx r_import rclipboard readr rstudioapi shiny shinydashboard shinyFiles shinyjs stringi stringr]; }; RAMClustR = derive2 { name="RAMClustR"; version="1.3.1"; sha256="0mlizk0rga6mprp4n2ff12yamvfsfk9v46d94ra6ld0i2jxm84fd"; depends=[dynamicTreeCut e1071 fastcluster ggplot2 gplots httr jsonlite pcaMethods stringr webchem]; }; RAMP = derive2 { name="RAMP"; version="2.0.2"; sha256="0836fiycrsxiwdw7srz1rvsf639iqh2rk89gavx4kvn0i0sc8d2x"; depends=[]; }; RAMpath = derive2 { name="RAMpath"; version="0.5.1"; sha256="0dp5illypz3qdj2qmn47wy208mcjhkkwvw8yq2spzcsn55l8f0nx"; depends=[ellipse lavaan MASS]; }; @@ -4043,33 +4123,33 @@ in with self; { RAdwords = derive2 { name="RAdwords"; version="0.1.18"; sha256="1c3m2j2cf1s51p783rdng5ns913bv7rbjc1vpmrmsxg2kf5f6qyq"; depends=[RCurl rjson]; }; RApiDatetime = derive2 { name="RApiDatetime"; version="0.0.8"; sha256="07zp27124pavqxc7arxnhphyi3c5y7ig4ampylw84z4h532gvsv4"; depends=[]; }; RApiSerialize = derive2 { name="RApiSerialize"; version="0.1.2"; sha256="02k0l8bi849b2102ysb102xky4p84i9v2r4w6fab7bgf32wvph4w"; depends=[]; }; - RAppArmor = derive2 { name="RAppArmor"; version="3.2.3"; sha256="04hxqwi75npayd3ghghswxc51k2xb525drixxk1fvp6hrhdkap5h"; depends=[unix]; }; + RAppArmor = derive2 { name="RAppArmor"; version="3.2.4"; sha256="1dg9ykmgb2bzqyh08jhfm1wv6zniqg6p49k8mfgxb534sqv5wdn4"; depends=[unix]; }; RAthena = derive2 { name="RAthena"; version="2.6.1"; sha256="1zncmkx93c28z0xf4n5rdc7fzlrdqw3x9ab2ci07f00gjf9gwkf1"; depends=[data_table DBI reticulate uuid]; }; - RBE3 = derive2 { name="RBE3"; version="1.0"; sha256="1vkd06qzfbz3z3mq7sma05k81pz5xg2pw6s6z706b0g2jhqqnkh3"; depends=[gtools pracma]; }; + RBE3 = derive2 { name="RBE3"; version="1.1"; sha256="1spk6nxr9r5mim3lhps55zwdj22yqxmm01h19p87yravbnjq99wc"; depends=[gtools pracma]; }; RBF = derive2 { name="RBF"; version="2.1.1"; sha256="0hwf9hca2vlgkjjldmkn6xj85b9gy7ydfd3smqnkby1shdaz4dfm"; depends=[]; }; RBNZ = derive2 { name="RBNZ"; version="1.1.0"; sha256="11fdnc2pmw5nq3lswid078l307ln6853a3b9d383msvrkz6yms26"; depends=[httr lubridate readxl rvest xml2]; }; RBPcurve = derive2 { name="RBPcurve"; version="1.2"; sha256="0zkfvnhm780vid4qqdrx9mnc6jxxrmrnq47pqvk35rm3m4l96782"; depends=[BBmisc checkmate mlr shape TeachingDemos]; }; RBaseX = derive2 { name="RBaseX"; version="1.1.2"; sha256="1f7lgfsxwqjplv8kk81sw3zmwqi9kxc8g328ylb2c2hiyq4fg49k"; depends=[data_table dplyr httr magrittr openssl pingr R6 RCurl rex stringr tibble]; }; - RBesT = derive2 { name="RBesT"; version="1.7-2"; sha256="16ws9bg9a646mh6lhyfzvhgczbi5fi5a3cw4vlxh5w68by5h1s5x"; depends=[abind assertthat bayesplot BH checkmate dplyr Formula ggplot2 matrixStats mvtnorm Rcpp RcppEigen RcppParallel rlang rstan rstantools StanHeaders]; }; + RBesT = derive2 { name="RBesT"; version="1.7-3"; sha256="19bhn1j03qsmc20xndyls0ynhqbwb3kis6mxm7wh9k87zcm1lvla"; depends=[abind assertthat bayesplot BH checkmate dplyr Formula ggplot2 matrixStats mvtnorm Rcpp RcppEigen RcppParallel rlang rstan rstantools StanHeaders]; }; RBtest = derive2 { name="RBtest"; version="1.1"; sha256="09da721zfj6cw4i9gifn5f0sv3nj0qfjb96c5w9g9gzx55ihssnk"; depends=[mice nnet psych]; }; RCA = derive2 { name="RCA"; version="2.0"; sha256="0pidb5czrf0dc3ywy6cwm5akgsc62pvf94kfyxibzmd1favykx1h"; depends=[gplots igraph]; }; RCAL = derive2 { name="RCAL"; version="2.0"; sha256="1k58im8dclyaqqcqm6v9618rlh8jkp74j7ly2lvqfb9jm0wgkx8h"; depends=[trust]; }; RCALI = derive2 { name="RCALI"; version="0.3.5"; sha256="0wvpypp724rnzbs01y8md660ckj2r0xb9n96hz8rzai2f84rbjif"; depends=[splancs]; }; - RCBR = derive2 { name="RCBR"; version="0.5.9"; sha256="1nxaf485jfg1kr80bxwczf27xz5ab7yz61c5l3bg9192jdf432ql"; depends=[Formula Matrix mvtnorm orthopolynom REBayes Rmosek]; }; + RCBR = derive2 { name="RCBR"; version="0.6.2"; sha256="08rcnvdbavcww2cpl052ca93lbzkza7q6jlr4namdpzmf22z7bma"; depends=[Formula Matrix mvtnorm orthopolynom REBayes Rmosek]; }; RCCPCA = derive2 { name="RCCPCA"; version="0.1.0"; sha256="0nix6d8cxi64qfnsk00rpzq9kf07a5skc8zkvywl2y2aw6wrlvnd"; depends=[]; }; - RCDT = derive2 { name="RCDT"; version="1.2.1"; sha256="0lp8d5h25kwp66849lwk1c1wc75wx7rrrvhiw42xcwxp66z2aycd"; depends=[BH gplots randomcoloR Rcpp RcppArmadillo rgl Rvcg]; }; + RCDT = derive2 { name="RCDT"; version="1.3.0"; sha256="1k27kydqzxqdhjbygq5a8mdhwlvbc32j1hg4vr223rwwc94864w6"; depends=[BH colorsGen gplots Polychrome Rcpp RcppArmadillo rgl Rvcg]; }; RCEIM = derive2 { name="RCEIM"; version="0.3"; sha256="1kil5r88b6lf8vxmswz0wn0hhjxjm8jmlcl5kxjwl6fwjyy2z120"; depends=[]; }; RCGLS = derive2 { name="RCGLS"; version="1.0.3"; sha256="12mmfs91fmhdxdxr7q16hnjlg7bz2bbkf8chld4cyf8clnflzvsj"; depends=[ncdf4 raster RCurl sp]; }; - RCLabels = derive2 { name="RCLabels"; version="0.1.4"; sha256="13d2mr5zflcdlp7h1g05smg5aglk7kj8yr8a5gywp16zwq14i39h"; depends=[assertthat Hmisc magrittr purrr]; }; + RCLabels = derive2 { name="RCLabels"; version="0.1.9"; sha256="0g8gfq9k5xskq87x5my928pmgz98629wg6pkzvl93sq5da7gdqmp"; depends=[assertthat Hmisc magrittr purrr]; }; RCMinification = derive2 { name="RCMinification"; version="1.2"; sha256="1bdgc7rwkdkimp4k1p5ah26nbp1ic09kyyx6xily260xq7m31g1w"; depends=[KernSmooth locpol]; }; - RCPA = derive2 { name="RCPA"; version="0.1.1"; sha256="0gjrk6nysj2i9zkg4n305g7nh1y2m4cd8mjf3bsl7bxsi695l147"; depends=[AnnotationDbi Biobase BiocManager DESeq2 dplyr edgeR GEOquery ggnewscale ggpattern ggplot2 ggrepel graph httr limma rlang RobustRankAggreg scales stringr SummarizedExperiment tidyr]; }; + RCPA = derive2 { name="RCPA"; version="0.2.1"; sha256="0lb0c4zdksyhx71xs9kzcsi9l69a4g1ig4cd8wyhln86pw0qpdxz"; depends=[AnnotationDbi Biobase BiocManager DESeq2 dplyr edgeR GEOquery ggnewscale ggpattern ggplot2 ggrepel graph httr IRdisplay jsonlite limma rlang RobustRankAggreg scales stringr SummarizedExperiment tidyr]; }; RCPA3 = derive2 { name="RCPA3"; version="1.1.1"; sha256="0zq700g7gwnf3rw0zd4m4h0rhp10d4ar5fdxwzbkn708c2m4znxg"; depends=[beepr car descr haven Hmisc knitr lmtest survey weights]; }; RCRnorm = derive2 { name="RCRnorm"; version="0.0.2"; sha256="1mz1jb7mc9c47hbk9flnddny4zir6r2k5qis30iynwqny521l6ln"; depends=[truncnorm]; }; RCSF = derive2 { name="RCSF"; version="1.0.2"; sha256="1hjl7qsdgcddn3nh2likndhfhnw9gj3453xqq96gddgb1y0m3bh1"; depends=[Rcpp]; }; RCT = derive2 { name="RCT"; version="1.1.2"; sha256="1cx39nnq50xjj5f1v8jvcia3j761qbi3w5gcyrax8daz7nlqsdxm"; depends=[broom dplyr forcats ggplot2 glue lfe magrittr MASS pracma purrr rlang stringr tidyr tidyselect]; }; RCT2 = derive2 { name="RCT2"; version="0.0.1"; sha256="1iwf4vp0wll1dgn0sxc3pycidhr6n52pmfmv85kyxkaz300ghhs7"; depends=[AER quadprog sandwich]; }; RCTS = derive2 { name="RCTS"; version="0.2.4"; sha256="0wx0c9sk8y1frjwifgszzp38yx5lmwndhvixbak1kcjw5n02rkyj"; depends=[cellWise dplyr ggplot2 magrittr ncvreg purrr Rdpack rlang robustbase stringr tibble tidyr]; }; - RCTrep = derive2 { name="RCTrep"; version="1.1.0"; sha256="0wg2rn2965yljfzqyjfdap8wkhz7f55yqan8krpw4ybf5v5acfas"; depends=[BART caret copula dplyr fastDummies geex ggplot2 ggpubr glue MatchIt mvtnorm numDeriv PSweight R6 shiny shinydashboard tidyr]; }; + RCTrep = derive2 { name="RCTrep"; version="1.2.0"; sha256="1miqidpn8a3wv6pd4xqsnk9gzdsvdwdzsm656ass67jgyzzh2c9h"; depends=[BART caret copula dplyr fastDummies geex ggplot2 ggpubr glue MatchIt mvtnorm numDeriv PSweight R6 shiny shinydashboard tidyr]; }; RCarb = derive2 { name="RCarb"; version="0.1.6"; sha256="0p4g41jsyy0kq8v1pva5463cass2924j6i1l5r665pzxya1w5n8p"; depends=[interp matrixStats]; }; RChest = derive2 { name="RChest"; version="1.0.3"; sha256="112y6g1lyk3wky825g77sy49wgqs8vqdi90lrp0qza6cqjg381mq"; depends=[Rdpack reticulate]; }; RChronoModel = derive2 { name="RChronoModel"; version="0.4"; sha256="0haqxwic160pnnm90bgchzxmsdwmi6m97i9xrh8js8bp2xn76l5f"; depends=[hdrcde]; }; @@ -4082,16 +4162,15 @@ in with self; { RConics = derive2 { name="RConics"; version="1.1.1"; sha256="0r5sn5kx6r3pjnvrgz7yxpyznb1js2i58vnbsqyzpl7jhcdhpz5x"; depends=[]; }; RCreliability = derive2 { name="RCreliability"; version="0.1.0"; sha256="083n6ix9yjnv4aafp11qac891gdhk62mhxmwkx9z3i0sxddwdb6r"; depends=[mgcv sandwich]; }; RCriteo = derive2 { name="RCriteo"; version="1.0.2"; sha256="1vyhnblw9zr5h6c25lf76p9vn95k8vr0hpq1sjkccdwl9yvsyhfy"; depends=[httr plyr RCurl XML]; }; - RCurl = derive2 { name="RCurl"; version="1.98-1.12"; sha256="1ci6lsxm0f13yzw712gcbq23syl54x5llvhs2w1b8wwm9vqgx0qs"; depends=[bitops]; }; - RCytoGPS = derive2 { name="RCytoGPS"; version="1.2.1"; sha256="1ppxyrm9h09kk6lnr6yg3n3xl08l9zp4rqliz92k5h42hmgj6f02"; depends=[rjson]; }; - RCzechia = derive2 { name="RCzechia"; version="1.11.1"; sha256="0s5flqqvkp00hkhyvhw2gy44xjvimhm0bjzcq0yh40rdcpswd00z"; depends=[curl httr jsonlite magrittr sf]; }; + RCurl = derive2 { name="RCurl"; version="1.98-1.14"; sha256="1kq3ydvm7hvy8pxk9iy13pkq5mxyxqlx4mpjsadzl7a7jj32gbgf"; depends=[bitops]; }; + RCytoGPS = derive2 { name="RCytoGPS"; version="1.2.5"; sha256="0a5ap6dizxsilsrv0gyg9vjawm9b6r91a8kbmyd66lpssk4mzc1i"; depends=[rjson]; }; + RCzechia = derive2 { name="RCzechia"; version="1.12.0"; sha256="1yvwnxab3h1ai2nr8aaw5hbp13a4ayq4cq2f5sbzx1x8szq97sni"; depends=[curl httr jsonlite magrittr sf]; }; RDM = derive2 { name="RDM"; version="0.1.1"; sha256="0aqjs7dh40d24l8fhhkyf1vnpwbxm47blfi4lwwld2hyi854m80q"; depends=[Rcpp Rfast]; }; RDML = derive2 { name="RDML"; version="1.0"; sha256="13ly1p42njbcygwvkyii8sjqbsywjy5w5g1kd7m8kswi5dsk3qqv"; depends=[checkmate data_table lubridate pipeR R6 readxl rlist stringr xml2]; }; RDP = derive2 { name="RDP"; version="0.3.0"; sha256="18bdd290xy167qclv4l35bfy6iicbn6v9k3sq0xihsc83ln1h7lk"; depends=[Rcpp]; }; RDS = derive2 { name="RDS"; version="0.9-7"; sha256="0xq190as7vza2fim7b4qhk7x3kckqpca7pp8klh14vkjhix9yias"; depends=[anytime ergm ggplot2 gridExtra Hmisc igraph isotone network reshape2 scales statnet_common]; }; RDSsamplesize = derive2 { name="RDSsamplesize"; version="0.5.0"; sha256="1k6yjxjv6s9c44lpm5yimca61jp3h4hbji75vfsji7dy7q908csl"; depends=[Rcpp]; }; RDStreeboot = derive2 { name="RDStreeboot"; version="1.0"; sha256="10ry8rna450j389cplvyvgwljxa8lli7licwdin64b1kyzy2cdn7"; depends=[]; }; - RDataCanvas = derive2 { name="RDataCanvas"; version="0.1"; sha256="1aw19lmdphxwva5cs3f4fb8hllirzfkk48nqdgrarz32l11y5z5j"; depends=[jsonlite]; }; RDieHarder = derive2 { name="RDieHarder"; version="0.2.5"; sha256="1djgy6al9f92i295bzc65lny7lz8gpk5js6hmfbflwfwcl9wg05b"; depends=[]; }; RDnp = derive2 { name="RDnp"; version="1.3"; sha256="1a10afwn41c0sd35i2hywg79gyf55nd212rfq5pv5inqdrr7kxym"; depends=[cellWise MASS]; }; RDocumentation = derive2 { name="RDocumentation"; version="0.8.2"; sha256="0qdn3c5xbjyrhk56wfch50xpyyfd4f79hs0v00cqk9iwsnjlwmb5"; depends=[httr proto rjson]; }; @@ -4099,16 +4178,17 @@ in with self; { REAT = derive2 { name="REAT"; version="3.0.3"; sha256="1bnmk74xdxckni6alp5kslsb3w7jlnfwc27mi5y3lry7zrvxi6lk"; depends=[]; }; REBayes = derive2 { name="REBayes"; version="2.54"; sha256="1kg105jnc7hjxihvrjcfklz6i29kznz9aqh6303v9v6hfmy6a094"; depends=[lattice Matrix]; }; RECA = derive2 { name="RECA"; version="1.7"; sha256="1xikj20flqajpkw4wyynmqd1pafbylzwfrmc8bz9pqgggjjhrqql"; depends=[]; }; - REDCapCAST = derive2 { name="REDCapCAST"; version="23.6.2"; sha256="0gn1fyk1808qcd8cvzkxp86vyy3cq709c2lkjwaxl48zfafv1sim"; depends=[dplyr REDCapR tidyr tidyselect]; }; - REDCapDM = derive2 { name="REDCapDM"; version="0.8.0"; sha256="1i1p40yklhmv53nn59znf3v51p6xbdrlnk5kc8b540i5q7c1i2hc"; depends=[dplyr janitor labelled magrittr openxlsx purrr REDCapR rlang stringi stringr tibble tidyr tidyselect]; }; + REDCapCAST = derive2 { name="REDCapCAST"; version="23.12.1"; sha256="11ggzhiq6svcvish84gxa9mnffcg21i46kz3vk5wv3hz6k58wlvf"; depends=[dplyr keyring purrr REDCapR tidyr tidyselect]; }; + REDCapDM = derive2 { name="REDCapDM"; version="0.9.5"; sha256="17acpzv4m09am2q0cckkbwspkfjh2f5487nyf6v2nzgdvgfilrrd"; depends=[cli dplyr forcats janitor labelled magrittr openxlsx purrr REDCapR rlang stringi stringr tibble tidyr tidyselect]; }; REDCapExporter = derive2 { name="REDCapExporter"; version="0.2.2"; sha256="0w7c1y58vnkbd11ndkcn5s5c54pmvyqhflwgg2q6dc3n671yp9wx"; depends=[curl data_table keyring lubridate]; }; REDCapR = derive2 { name="REDCapR"; version="1.1.0"; sha256="02d41mbplc7fb0yf6sf62fzfzai95vjqxhz2hkz7135w17s31j8r"; depends=[checkmate dplyr httr jsonlite magrittr readr rlang tibble tidyr]; }; - REDCapTidieR = derive2 { name="REDCapTidieR"; version="0.4.1"; sha256="0c2b8ihjjzwl1g6jnrbp3c5blyqjrxpn0dkfnkk1v4vg8swrwh75"; depends=[checkmate cli dplyr formattable lobstr lubridate purrr REDCapR rlang stringi stringr tibble tidyr tidyselect]; }; + REDCapTidieR = derive2 { name="REDCapTidieR"; version="1.0.0"; sha256="0mv9llh0xgyzh1iqa57i83vq1ijglcmnymk0m4zy34b01q4yjkha"; depends=[checkmate cli dplyr formattable lobstr lubridate purrr REDCapR rlang stringi stringr tibble tidyr tidyselect]; }; REDI = derive2 { name="REDI"; version="1.0.0"; sha256="0i7gfsqyjhkwh6wxzzznai2qyfk3njim992njp0djd6lpbj96mdw"; depends=[dplyr ggplot2 lubridate magrittr rlang tibble tidyr]; }; - REEMtree = derive2 { name="REEMtree"; version="0.90.4"; sha256="11m9k6xli3gqw2f9vwa9abpwsnxawi675zmi916yq2shws49m8xn"; depends=[nlme rpart]; }; + REEMtree = derive2 { name="REEMtree"; version="0.90.5"; sha256="1iapqwhis2vz19c3mivmwpj0nlgzb8fm3j2w060ypydwzmar0qmj"; depends=[nlme rpart]; }; + REFA = derive2 { name="REFA"; version="0.1.0"; sha256="1h6p8m1nyk6a1j6ffgjrx5sn39r1jaavx1ya367k6lkxjp3skf8w"; depends=[mvtnorm]; }; REGENT = derive2 { name="REGENT"; version="1.0.6"; sha256="1f2sjqkhw3rbmwbcmx7l7imj696kblisi8y3fz77xygbcbxa6rmq"; depends=[]; }; REPLesentR = derive2 { name="REPLesentR"; version="0.4.1"; sha256="0rwd7hxk12f4f1kpj6sl424yhbxi3h9dz6km5awijazmgv95carz"; depends=[dat knitr modules]; }; - REPPlab = derive2 { name="REPPlab"; version="0.9.4"; sha256="1pf8zrjdzziyq2lw31p1ij7cn4j7pf659ygxv8wpfnmcmpaqbc45"; depends=[lattice LDRTools rJava]; }; + REPPlab = derive2 { name="REPPlab"; version="0.9.6"; sha256="1hiv6fz2s7dwjixnlqckvpa4dns8wannpinjjpxs3fcskgxmkgrz"; depends=[lattice LDRTools rJava]; }; REPPlabShiny = derive2 { name="REPPlabShiny"; version="0.4.2"; sha256="0mm815pf90xqp1fgz955cdgc9k72kpq8zlpfa18pb478c02kvwg3"; depends=[DT REPPlab shiny]; }; REPTILE = derive2 { name="REPTILE"; version="1.0"; sha256="11swy4jrmmb0xjjxm1wyxd628fxxcqnialvijdrjwjpdbvraz4gq"; depends=[doParallel flux foreach optparse randomForest]; }; REQS = derive2 { name="REQS"; version="0.8-13"; sha256="1yzd37kqkg477p501l6s8iah9pkjsnsbxmk32w0rji7jpj7r2rs5"; depends=[gtools]; }; @@ -4120,25 +4200,27 @@ in with self; { REddyProc = derive2 { name="REddyProc"; version="1.3.2"; sha256="1irclh991wp1ns2wb9dd88kqd5vg1kd8vk83a7w0kjpf20yqnkvp"; depends=[bigleaf dplyr magrittr purrr Rcpp readr rlang solartime tibble]; }; REddyProcNCDF = derive2 { name="REddyProcNCDF"; version="1.1.4"; sha256="099f4mzqj7pjlrs8rdjg44mjm0058x3pj2imrfvk892hmlk4r53p"; depends=[REddyProc]; }; REndo = derive2 { name="REndo"; version="2.4.9"; sha256="08am92h1j2zx7pannnd6z9h4xr14awdp4rzv4sdmgf3x7sfjcp5g"; depends=[AER corpcor data_table Formula lme4 lmtest Matrix mvtnorm optimx Rcpp RcppEigen]; }; - RFCCA = derive2 { name="RFCCA"; version="1.0.11"; sha256="1l0igj4wxajq2712ia5rc4l11xqpdg32nx31h1d9dpnab31914wc"; depends=[CCA PMA]; }; + RFCCA = derive2 { name="RFCCA"; version="1.0.12"; sha256="033a2dx8h469rksyjrh2fgxlrpz4n06bixla3rjg024cz10a4pfg"; depends=[CCA PMA]; }; RFLPtools = derive2 { name="RFLPtools"; version="2.0"; sha256="07hw0hyyxqy31qakkb410gb3i0g5jvpmigv5cqhxqss2cwzpch0d"; depends=[RColorBrewer]; }; RFOC = derive2 { name="RFOC"; version="3.4-10"; sha256="0011irdbvflqz9r1l6c8d801y6jx0xmwhcv2a6xjwj0bjsw1s8di"; depends=[fields GEOmap MASS RPMG RSEIS]; }; - RFPM = derive2 { name="RFPM"; version="1.0"; sha256="1rhi1nn1xxc5qvxk2vwd96325pqwz45b2bvaq994glvlxniki3c1"; depends=[dplyr lawstat reshape2]; }; + RFPM = derive2 { name="RFPM"; version="1.1"; sha256="0qj51z772v1lr1x9mb2akvzbw20fn87w10c6gmw5qv845mg360kj"; depends=[dplyr lawstat tidyr]; }; RFclust = derive2 { name="RFclust"; version="0.1.2"; sha256="04cynwsfs07j6kbpnpk4kx7p2a33y5qylpvydv29975z7p871vsm"; depends=[ConsensusClusterPlus randomForest]; }; - RFishBC = derive2 { name="RFishBC"; version="0.2.6"; sha256="1nrfznkh2k7r8kzxr4k5ncp4rk3y21snbf0fjsm8ag9bhqzhcl3f"; depends=[cli clisymbols crayon readbitmap rlang settings stringr tidyr withr]; }; + RFishBC = derive2 { name="RFishBC"; version="0.2.7"; sha256="15vdw8lg7g7v0ylh7x90lxmn37fyb31faaq1wnci2zdn177xgy70"; depends=[cli clisymbols crayon readbitmap rlang settings stringr tidyr withr]; }; + RFlocalfdr = derive2 { name="RFlocalfdr"; version="0.8.5"; sha256="0vp2zblx5419jhs1l6wg18k3wdf4kaslmrys4xml8432pkqmnja0"; depends=[fitdistrplus minpack_lm randomForest ranger RFlocalfdr_data sn vita]; }; + RFlocalfdr_data = derive2 { name="RFlocalfdr.data"; version="0.0.3"; sha256="0pc3qgs1mjvrlr7c40p0nkiyc19p9z1j8jbcbdrbsvqz16sikcgw"; depends=[]; }; RFormatter = derive2 { name="RFormatter"; version="0.1.1"; sha256="0jmzdc2cl4vvffsyfwp493fiygh9xinhv970qxp1667rw8wlap8l"; depends=[formatR]; }; - RFpredInterval = derive2 { name="RFpredInterval"; version="1.0.7"; sha256="1r26pd6dxvkbx2aqcgb4rn9bdwnac3smw4wb1qr4pzzp9nw1ji4h"; depends=[data_table data_tree DiagrammeR hdrcde ranger]; }; + RFpredInterval = derive2 { name="RFpredInterval"; version="1.0.8"; sha256="08nr4a5nzwb4wdzi87jangv4yfl8dh3bhbwksipal3dhmmiwgzbf"; depends=[data_table data_tree DiagrammeR hdrcde ranger]; }; RGAN = derive2 { name="RGAN"; version="0.1.1"; sha256="0820fvmiw853hfls7mydca9lhwxrrkj49vshp151by9mavwkx413"; depends=[cli torch viridis]; }; - RGAP = derive2 { name="RGAP"; version="0.1.0"; sha256="0mc0cwwl6nlrjsgsqpbzzry8rx00fdj26a3g3wa9cw0n8nvh0p54"; depends=[dlm ggplot2 gridExtra KFAS openxlsx zoo]; }; + RGAP = derive2 { name="RGAP"; version="0.1.1"; sha256="1gskz1zsr9v30f7w67a7d3fm66cnlafj329zq110ddgbp3agd2ll"; depends=[dlm ggplot2 gridExtra KFAS openxlsx zoo]; }; RGBM = derive2 { name="RGBM"; version="1.0-11"; sha256="12pi503n767c707f4nqfn7zzvxb25kb6pks0257bcixwm37a6r54"; depends=[doParallel foreach plyr]; }; - RGCCA = derive2 { name="RGCCA"; version="3.0.2"; sha256="10rzjnisjhryj6z8qp2wzjvmf3wg7xflskii83llr5gh0v8yjrf9"; depends=[caret Deriv ggplot2 ggrepel gridExtra MASS matrixStats pbapply rlang]; }; + RGCCA = derive2 { name="RGCCA"; version="3.0.3"; sha256="00ap665i3vg4nnrs7wasyd05rgvk1mr1gcihrc50awdfkgwjghs8"; depends=[caret Deriv ggplot2 ggrepel gridExtra MASS matrixStats pbapply rlang]; }; RGCxGC = derive2 { name="RGCxGC"; version="1.2.0"; sha256="1hz363pqlx0l3wi4di69fmrv4awl37lz8fzl4g070zchwzbffcpc"; depends=[colorRamps ptw Rdpack RNetCDF]; }; RGE = derive2 { name="RGE"; version="1.0"; sha256="1ild1if10xicfapfcmydz1cgvn5fyydrik8qclb90i95bl9bs4ia"; depends=[coda Matrix MatrixModels]; }; RGENERATE = derive2 { name="RGENERATE"; version="1.3.7"; sha256="0w6hqrf2lr6qz79skml2vjpfwfv5vxj94rghxxa3rp9dqzhi7rc0"; depends=[magrittr RMAWGEN]; }; RGENERATEPREC = derive2 { name="RGENERATEPREC"; version="1.2.9"; sha256="0bnw77vny61pkhp9pb3v3ckz6immm4pp9f7qzyhc97646fci9ysl"; depends=[blockmatrix copula Matrix RGENERATE RMAWGEN stringr]; }; RGF = derive2 { name="RGF"; version="1.1.1"; sha256="0dld7icq02mc5gdy8lpjwdfpk9l5cwmqc6f8zf083sjvp0b2rgb9"; depends=[Matrix R6 reticulate]; }; - RGIFT = derive2 { name="RGIFT"; version="0.1-5"; sha256="1745fs4bq0ss39fiwljspvrmnkgbbpc1fjvhvcrsmp2iizq12sgn"; depends=[]; }; - RGMM = derive2 { name="RGMM"; version="1.1.0"; sha256="0x5v16pzg79ria0jah8rkpyqjixkdm4n4xklniy38663d6vqj2sx"; depends=[doParallel foreach genieclust ggplot2 LaplacesDemon mclust mvtnorm Rcpp RcppArmadillo reshape2 RSpectra]; }; + RGIFT = derive2 { name="RGIFT"; version="0.1-6"; sha256="12kfm2lq5ix0bnd5zqqb30ws105nd23iipim4xlsdapighwp391m"; depends=[]; }; + RGMM = derive2 { name="RGMM"; version="2.1.0"; sha256="1b0r1scxd40d93s96xa1cc9ls1f7vs2g5g8sjnm0kd562mwj4pxp"; depends=[DescTools doParallel foreach genieclust ggplot2 LaplacesDemon mclust mvtnorm Rcpp RcppArmadillo reshape2 RSpectra]; }; RGN = derive2 { name="RGN"; version="1.0.0"; sha256="1gpn595ywc1yrmr0vgwk5fa2j062pap85rz62dnyz2cncr0kvr48"; depends=[]; }; RGenData = derive2 { name="RGenData"; version="1.0"; sha256="124h2qvp0f6cil7zf4ln3n0jlqcfzdwbihzfaklk2lxxn7gq4mbi"; depends=[]; }; RGenetics = derive2 { name="RGenetics"; version="0.1"; sha256="0x5sspd67hh08qm62whlnnd838m0np29q3bfzgwp6j85lhil3jrx"; depends=[]; }; @@ -4157,7 +4239,8 @@ in with self; { RHawkes = derive2 { name="RHawkes"; version="1.0"; sha256="1ishfdbyk9g6lh5q6apbaw7vh9cfwyykag27imrfpx3c40sbwmd4"; depends=[IHSEP]; }; RHclust = derive2 { name="RHclust"; version="2.0.0"; sha256="0hfi1p1y3kfi7kmmwvpzf7j2rlkamfl2s6sb26h2qz07fp5ha3p5"; depends=[Runuran]; }; RHybridFinder = derive2 { name="RHybridFinder"; version="0.2.0"; sha256="0g8kvzir8kfgg3ifww164lbqhsi2yw3dp80r68g36vxfzy11y230"; depends=[doParallel foreach seqinr]; }; - RIA = derive2 { name="RIA"; version="1.7.1"; sha256="0q36xaikj4c208hk48zdlpgx0hfvc5dpwckr0ksk217n0h5hfk1x"; depends=[oro_dicom oro_nifti]; }; + RI2by2 = derive2 { name="RI2by2"; version="1.4"; sha256="1kaphphc21jxizm3h6kfh0ky17pyq3ykh30v7b582d7km00hivg8"; depends=[gtools Rcpp]; }; + RIA = derive2 { name="RIA"; version="1.7.2"; sha256="0ahz8kjp3rqm3cyh1mzqsfh4iqd6jw6pb7j7rdl2qyi5j0dzsv4c"; depends=[oro_dicom oro_nifti]; }; RIFS = derive2 { name="RIFS"; version="0.1.6"; sha256="0cbz2vg8adqjkbn9r8cikqxlzhk01ba3nlnh8rqbwdcpiz90l1ip"; depends=[]; }; RISCA = derive2 { name="RISCA"; version="1.0.4"; sha256="1mhydhr6a0wywr0pml7jw0sra2iavzbkxm3gs0w9p53ssdipnw49"; depends=[caret cubature date doParallel flexsurv foreach glmnet glmnetUtils hdnom kernlab MASS mosaic mosaicCalc mvtnorm nlme nnet prodlim randomForestSRC relsurv reticulate rpart statmod SuperLearner survival survivalmodels timeROC tune]; }; RISmed = derive2 { name="RISmed"; version="2.3.0"; sha256="0vpi88gzi9r85v6nhjz9jbw671zkrmyazwna2z881346wfyr3l8b"; depends=[httr xml2]; }; @@ -4172,7 +4255,7 @@ in with self; { RJDBC = derive2 { name="RJDBC"; version="0.2-10"; sha256="06b2gw76jwmm3lw3knmn6slc6824d4gzry94n96d97ii4fm4gwrp"; depends=[DBI rJava]; }; RJDemetra = derive2 { name="RJDemetra"; version="0.2.4"; sha256="168if9s8zwmfcaj3mw7r2ksk0ri12cxqxfljs5ficcnxrm65vfn6"; depends=[rJava]; }; RJSDMX = derive2 { name="RJSDMX"; version="3.0-6"; sha256="036ixsa2vymlmq3wb9yaclwkql30jgrycmfq8k0n6gxl309x5z2y"; depends=[rJava zoo]; }; - RJSONIO = derive2 { name="RJSONIO"; version="1.3-1.8"; sha256="1xak6n15ck7rj9swxk99vpjly1naxgz9gj6zjmib2lkq7inmgw7n"; depends=[]; }; + RJSONIO = derive2 { name="RJSONIO"; version="1.3-1.9"; sha256="1kiy36hjzh5if5npqv5mdvkr5pdfg3ibj178gr0kz1r81i5h6wzi"; depends=[]; }; RJSplot = derive2 { name="RJSplot"; version="2.7"; sha256="02q5isc137nx7qil2p3903xfsjwk54507rs72dfaiy6a8scys5j9"; depends=[]; }; RJafroc = derive2 { name="RJafroc"; version="2.1.2"; sha256="1immjb2313ss7pc61m3y59h6m3i0257lhvrkkvhrprl9jsyanfca"; depends=[bbmle binom dplyr ggplot2 mvtnorm numDeriv openxlsx Rcpp readxl stringr]; }; RJcluster = derive2 { name="RJcluster"; version="3.2.4"; sha256="157dmi5gksq7s16ip4n9j5bj9s9bawl078rh13s1xxyr6f51yp09"; depends=[foreach infotheo matrixStats mclust profvis Rcpp RcppArmadillo rlang]; }; @@ -4204,23 +4287,26 @@ in with self; { RMOAjars = derive2 { name="RMOAjars"; version="1.2.0"; sha256="0rpdi22a296fzylpb97gwvv5zrq7v57bng1c52bf72pqkpa9lyqq"; depends=[rJava]; }; RMOPI = derive2 { name="RMOPI"; version="1.1"; sha256="0jjli73b1xinrkq0fndfaan1mgf6yb29skqvva4lib0zgd8p1v21"; depends=[fPortfolio ggplot2 lubridate MASS PerformanceAnalytics rugarch tibble timeDate timeSeries TTR xts]; }; RMPSH = derive2 { name="RMPSH"; version="1.1.1"; sha256="0jffp8942ydwain23kvy7q6avpxxsb77jj1mg4bq43fwgfc9nqjy"; depends=[Rcpp]; }; + RMSD = derive2 { name="RMSD"; version="0.1.0"; sha256="0n6qcy8biswjsqhhcmahbn09xmnlgaa4hjlngh3kqran91p7c3i0"; depends=[]; }; + RMSDp = derive2 { name="RMSDp"; version="0.1.0"; sha256="12yfjs66w9d1i9yir731nk7038rg7b77m05fjs9x7a5cs9001azg"; depends=[doParallel foreach]; }; RMSNumpress = derive2 { name="RMSNumpress"; version="1.0.1"; sha256="1y86dpa8kpq2bkvl90qwghxrnll5h3y9ycyvmamm4kd7ivy59sxi"; depends=[Rcpp]; }; RMSS = derive2 { name="RMSS"; version="1.1.1"; sha256="18hm626yr3xrsi9spzr42y9pf547xdx7byqq15bvh9f04qaalck3"; depends=[cellWise Rcpp RcppArmadillo robStepSplitReg robustbase srlars]; }; RMT4DS = derive2 { name="RMT4DS"; version="0.0.1"; sha256="05fwhd36lvi21gr5nz8mgxk5qzw4vxkrgw499p11aa9qhcn8xq4g"; depends=[lpSolve MASS mpoly nleqslv pracma quadprog rARPACK RMTstat rootSolve]; }; RMTL = derive2 { name="RMTL"; version="0.9.9"; sha256="1wyv9l1xgdm4s8ibjw3kwfsr77hxkxj80cgvkfv4mdir0bxm84b4"; depends=[corpcor doParallel foreach MASS psych]; }; RMThreshold = derive2 { name="RMThreshold"; version="1.1"; sha256="0wkc42vcggib002ad6ch43h6avpdgl12szrrrfd2p0wl72cwn5n1"; depends=[Matrix png]; }; RMTstat = derive2 { name="RMTstat"; version="0.3.1"; sha256="1r1a2sdqv64m9cpm2pz6r8abf7l810126ayd8iq3gx86c7bjfj5v"; depends=[]; }; - RMVL = derive2 { name="RMVL"; version="0.0.4.4"; sha256="01w649iw62kpyp4a3lyrqcfb8iqcd0v8zwz6aq1cnxhw04hz0c1w"; depends=[]; }; + RMVL = derive2 { name="RMVL"; version="1.0.0.1"; sha256="199jsf82sbbzh6nn6ykmvqc1ad8wcm36qhfav2ggp1zrdy5vwhmq"; depends=[]; }; RMaCzek = derive2 { name="RMaCzek"; version="1.5.1"; sha256="1zbpwhfa9mb55yglf4kgvch3hg7pvsfga4kpq45lz1cbs9454mzw"; depends=[e1071 ecp GA RColorBrewer seriation]; }; RMallow = derive2 { name="RMallow"; version="1.1"; sha256="1s6a3347739rfc8rrh2773b278gcbp8hf5j5psm61fz7bavy9gcj"; depends=[combinat]; }; - RMariaDB = derive2 { name="RMariaDB"; version="1.3.0"; sha256="080pxl29q9fm5a3n8jp5dmwlwcc2snrz40zjdqyfkfb0m81zprih"; depends=[bit64 blob cpp11 DBI hms lubridate plogr rlang]; }; + RMariaDB = derive2 { name="RMariaDB"; version="1.3.1"; sha256="0a39n1pgpxhq095bz689fxar68vvy5hypxym1d1ric0s8vs2l6vd"; depends=[bit64 blob cpp11 DBI hms lubridate plogr rlang]; }; RMark = derive2 { name="RMark"; version="3.0.0"; sha256="0nrh55rmfkrncpc58hranjww37dp8qrngkcazs5nmznw8r10z8h8"; depends=[coda matrixcalc msm]; }; RMediation = derive2 { name="RMediation"; version="1.2.2"; sha256="16zw8ic8h2q1qg627ddaxmr9dvj7ckdljbzfgwq557nxc2fgk1v2"; depends=[doParallel e1071 foreach iterators lavaan MASS modelr OpenMx stringr]; }; RMixpanel = derive2 { name="RMixpanel"; version="0.7-1"; sha256="1xwmmfvky49n1l0w3kwcyaf2h4rhzz4k5icjwvpc90fqk8sxib6a"; depends=[base64enc jsonlite RCurl uuid]; }; RMixtComp = derive2 { name="RMixtComp"; version="4.1.4"; sha256="1jybw5yhcahvixpyb551mzifi6kw914g80g1g4pdbgpkg4f9sfk4"; depends=[ggplot2 plotly RMixtCompIO RMixtCompUtilities scales]; }; RMixtCompIO = derive2 { name="RMixtCompIO"; version="4.0.11"; sha256="1y2m5fb8a2xc0ydrjl2l1a6vfabndvrighwz5yi288wqgih70gqz"; depends=[BH doParallel foreach Rcpp RcppEigen]; }; RMixtCompUtilities = derive2 { name="RMixtCompUtilities"; version="4.1.6"; sha256="0a9aasfd87azvf0ig7h9szf10v73696z194a21dqg7njdrx4p97b"; depends=[ggplot2 plotly scales]; }; - RMySQL = derive2 { name="RMySQL"; version="0.10.26"; sha256="0yk3xyj6fwyms4ii80m304xn0zbhayfmrhd1b0x7s7wblch5pfs5"; depends=[DBI]; }; + RMySQL = derive2 { name="RMySQL"; version="0.10.27"; sha256="1axz0pqvpqs028p2j7awmgdwpignl7m3hqd1fv3vkgfrkil5nwzi"; depends=[DBI]; }; + RNAmf = derive2 { name="RNAmf"; version="0.1.0"; sha256="07yr31wpbhp3n84cw2i8jhsxhb9sxdwqzrmdr6f8c6f42qmr0n5w"; depends=[doParallel foreach lhs plgp]; }; RNAseqNet = derive2 { name="RNAseqNet"; version="0.1.4"; sha256="16ab0p0378j4vvcazynffsgx1rq32llf1sz4h4pp5lrx820j6qvx"; depends=[ggplot2 glmnet hot_deck igraph PoiClaClu]; }; RNAseqQC = derive2 { name="RNAseqQC"; version="0.1.4"; sha256="0f9k3ba2w75sjywngmvp7g10837wx65v112inpag3rplk9ljahvp"; depends=[AnnotationFilter AnnotationHub circlize ComplexHeatmap cowplot DESeq2 dplyr ensembldb gghighlight ggplot2 ggpointdensity ggrepel ggsci magrittr matrixStats patchwork purrr RColorBrewer stringr SummarizedExperiment tibble tidyr tidyselect vsn]; }; RNAsmc = derive2 { name="RNAsmc"; version="0.8.0"; sha256="0lssw4qwcsdwcd3chkb1kslqh7yn25prl1npp1464nvmvz9yqdwm"; depends=[circlize RRNA]; }; @@ -4233,10 +4319,10 @@ in with self; { RNaviCell = derive2 { name="RNaviCell"; version="0.2"; sha256="15k8hkagn5520fy7x672fy329s2v7l0x44s44f6v7ql9mmg4b635"; depends=[RCurl RJSONIO]; }; RNeXML = derive2 { name="RNeXML"; version="2.4.11"; sha256="0ipxdhfzccpqmnfrqdy8bizm80k2chhdlzg3p0dl05p8n35i6s94"; depends=[ape dplyr httr plyr reshape2 rlang stringi stringr tidyr uuid XML xml2]; }; RNentropy = derive2 { name="RNentropy"; version="1.2.3"; sha256="1kflx1i01ddq803i0vj79zfjs9y0sl8dzra9j5x84m6wcjbn71kl"; depends=[]; }; - RNetCDF = derive2 { name="RNetCDF"; version="2.8-1"; sha256="0gjilz2nzwzb8izzcfl6sq5i2nf9gvsn9np4bla5ja17gv5lh0b6"; depends=[]; }; + RNetCDF = derive2 { name="RNetCDF"; version="2.9-1"; sha256="0hn14g75i5j5qhcb8p5mrsdkjz7w35d44r08cl3w2clnfsc2nzjw"; depends=[]; }; RNetLogo = derive2 { name="RNetLogo"; version="1.0-4"; sha256="1z7jp454k197c0zbkn64zmf25wadkiznv3w2csgiz917cbx6xcn1"; depends=[igraph rJava]; }; RNewsflow = derive2 { name="RNewsflow"; version="1.2.7"; sha256="08jyj57y20a156dhpwn83v27lgc57yv189qrlsy5qn48jzfdb77h"; depends=[data_table igraph Matrix quanteda Rcpp RcppEigen RcppProgress scales stringi wordcloud]; }; - RNifti = derive2 { name="RNifti"; version="1.5.0"; sha256="01g9ylmjirmblgcl1f8kzwfzbpyf4vy2rci1407jx4s3av9xzr1j"; depends=[Rcpp]; }; + RNifti = derive2 { name="RNifti"; version="1.5.1"; sha256="0rbym1svldahd4rlbcfb5s62rigws2w1fa1f1chp504gn340b555"; depends=[Rcpp]; }; RNiftyReg = derive2 { name="RNiftyReg"; version="2.8.1"; sha256="0k5qqkn2jnsrlb2j99lsy1v4dymrs2xjxyrhvpnxhdx7fyghhj64"; depends=[ore Rcpp RcppEigen RNifti]; }; ROAuth = derive2 { name="ROAuth"; version="0.9.6"; sha256="0vhsp8qybrl94898m2znqs7hmlnlbsh8sm0q093dwdb2lzrqww4m"; depends=[digest RCurl]; }; ROCFTP_MMS = derive2 { name="ROCFTP.MMS"; version="1.0.0"; sha256="022cz5vh79c50r31rxn5fjghl65wn1ns8xdgq3b05hjf9psjvg4x"; depends=[vctrs]; }; @@ -4247,7 +4333,7 @@ in with self; { ROCket = derive2 { name="ROCket"; version="1.0.1"; sha256="1p5b1408fdq8z64b7ihwcdxprg5rfiq4z5annxzvmizzr6qwn8qa"; depends=[data_table]; }; ROCnReg = derive2 { name="ROCnReg"; version="1.0-8"; sha256="08dklrd4ym60h3s5s88g9bv1adi8d6fxnnw2ap9870a1h0a7dk7g"; depends=[lattice MASS Matrix moments nor1mix np pbivnorm spatstat spatstat_geom]; }; ROCpsych = derive2 { name="ROCpsych"; version="1.3"; sha256="0fcrhhxmvrrchbswb94liahbgz5pfhs86fbj0vby7vnakrhngh7v"; depends=[pROC reportROC]; }; - RODBC = derive2 { name="RODBC"; version="1.3-21"; sha256="16jddw6slr75a3li0rpbfw269syplarhax71fkn32p1w0fql2w56"; depends=[]; }; + RODBC = derive2 { name="RODBC"; version="1.3-23"; sha256="0fqgbs2zanq7xjl252s1fpqivqz4ll23nnf74122kcxgq1dd3k8m"; depends=[]; }; RODBCDBI = derive2 { name="RODBCDBI"; version="0.1.1"; sha256="0jkcc1lm8drsx1pkfj5h6rlbr98cgpvbf9ndzdwr048f3s8gd26i"; depends=[DBI RODBC]; }; ROI = derive2 { name="ROI"; version="1.0-1"; sha256="05hnj9fskfm2klz7zv97lb0r60akjq4a1cay8p62whpi0hri9zyl"; depends=[checkmate registry slam]; }; ROI_models_globalOptTests = derive2 { name="ROI.models.globalOptTests"; version="1.1-1"; sha256="1zj636cmjhhqbn6hh6760bi5y8lf6y7qqkz72yijq7dj2y1za2ph"; depends=[globalOptTests ROI]; }; @@ -4263,7 +4349,7 @@ in with self; { ROI_plugin_ipop = derive2 { name="ROI.plugin.ipop"; version="1.0-0"; sha256="00xjariraga2j4zk6vyzwl5g4a65ki1jmky556hizma78ksjrikv"; depends=[kernlab ROI slam]; }; ROI_plugin_lpsolve = derive2 { name="ROI.plugin.lpsolve"; version="1.0-2"; sha256="0xgg1fzq5sba3yvvrci3iw97p31walpnhv4zwnd39gw8v5z6f9dj"; depends=[lpSolveAPI ROI]; }; ROI_plugin_msbinlp = derive2 { name="ROI.plugin.msbinlp"; version="1.0-1"; sha256="1nxjli87phi3cl101aaf8apib2crxbv1i0vlvq79difb8v7mjgya"; depends=[ROI slam]; }; - ROI_plugin_neos = derive2 { name="ROI.plugin.neos"; version="1.0-1"; sha256="1k6bq95nzispd6c9ylp4gxb1gfigpwyxkhac8z1sd3bav0zagavp"; depends=[ROI xml2 xmlrpc2]; }; + ROI_plugin_neos = derive2 { name="ROI.plugin.neos"; version="1.0-2"; sha256="15234844gnd86liw2a5a3rbfmrypdqi75xlxkjj49dfvsx7ghvd1"; depends=[ROI xml2 xmlrpc2]; }; ROI_plugin_nloptr = derive2 { name="ROI.plugin.nloptr"; version="1.0-1"; sha256="05517zgk5p548criz6211hqc11r745bbj4fxjvkbcrh03ijhxyhx"; depends=[nloptr ROI]; }; ROI_plugin_optimx = derive2 { name="ROI.plugin.optimx"; version="1.0-1"; sha256="1d2kwzgs9pf56fm90n0wxldgm3n7ybk31avklcspa40bki9lr6af"; depends=[optimx ROI]; }; ROI_plugin_osqp = derive2 { name="ROI.plugin.osqp"; version="1.0-1"; sha256="1b62jwj946mxlq7n2ilk2v7bknkjhifxy15yaqvbfxvkyk0r8jfi"; depends=[Matrix osqp ROI slam]; }; @@ -4275,7 +4361,7 @@ in with self; { ROOPSD = derive2 { name="ROOPSD"; version="0.3.9"; sha256="0xc7fgg376wld4g61k7pfi1fwkxzzl69njn6p4v8ia4mnvp1p892"; depends=[Lmoments numDeriv R6]; }; ROSE = derive2 { name="ROSE"; version="0.0-4"; sha256="0y3v9zkgaxpv4f4zn22ra1gkkqg5hdz8js47ppciqahfydjbfl3p"; depends=[]; }; ROlogit = derive2 { name="ROlogit"; version="0.1.2"; sha256="09j9c24f7plzpnnhpmzdi4gapb7w1377ksjwk6i2xpyr4bfsrr5k"; depends=[evd survival]; }; - ROpenCVLite = derive2 { name="ROpenCVLite"; version="4.80.0"; sha256="0dvvn3yh9629xih7f5ywgrrxzg3am4i79z6z76ndnh14pvwlk1kg"; depends=[pkgbuild]; }; + ROpenCVLite = derive2 { name="ROpenCVLite"; version="4.90.0"; sha256="0rfa0g6ywp0ykazckgk3axc23ip8f52abg4kpk7xy933yvdv3bcf"; depends=[pkgbuild]; }; ROpenDota = derive2 { name="ROpenDota"; version="0.1.2"; sha256="17s73yj2w5hlpy09ad83m4s2d9shg5h4zg64wvbp1ivyvpp7l308"; depends=[jsonlite RCurl]; }; ROpenFIGI = derive2 { name="ROpenFIGI"; version="0.2.8"; sha256="0fvd25vsqkgi3jv4s2lnfag5qksyzyb48d7rhfw6z8piz37n4xaj"; depends=[httr jsonlite]; }; ROpenWeatherMap = derive2 { name="ROpenWeatherMap"; version="1.1"; sha256="0h1yw93v06bx8svhghh1fsrf837qax9896klh64b06djpgg9ngb9"; depends=[httr jsonlite RCurl]; }; @@ -4300,16 +4386,16 @@ in with self; { RPhosFate = derive2 { name="RPhosFate"; version="1.0.4"; sha256="1gmnnvihxg6j83w4qgrrx61fz4p9r145qxs2qcscrs1q8bzlvw9k"; depends=[checkmate raster Rcpp RcppArmadillo spatstat_geom yaml]; }; RPostgreSQL = derive2 { name="RPostgreSQL"; version="0.7-5"; sha256="18czy93l9dg321pbvrfmlwrjahpbkiw0sll4pkkqm55xapp02m3b"; depends=[DBI]; }; RPostgres = derive2 { name="RPostgres"; version="1.4.6"; sha256="1ld03r9rzfxx6gzy3yn8jhzp9sp2qd9wydpxz955ggjxwdklpvnr"; depends=[bit64 blob cpp11 DBI hms lubridate plogr withr]; }; - RPresto = derive2 { name="RPresto"; version="1.4.5"; sha256="1yf5kbmc73ff2kl9s6jmdrpkc7i4118n0wnpdfpz1p4qkm8s4pas"; depends=[bit64 DBI dbplyr dplyr httr jsonlite lifecycle lubridate openssl progress purrr rlang stringi tibble]; }; + RPresto = derive2 { name="RPresto"; version="1.4.6"; sha256="1q8c3h328iwscnayxj8qc71s2hkqdqwnpf38kn3zz3ks66qzjf8c"; depends=[bit64 DBI dbplyr dplyr httr jsonlite lifecycle lubridate openssl progress purrr rlang stringi tibble vctrs]; }; RProbSup = derive2 { name="RProbSup"; version="3.0"; sha256="1z53zgx26fwfhb1vxad0l51v34y2lsplhwbjaf4r44rngdaw9h5n"; depends=[]; }; - RProtoBuf = derive2 { name="RProtoBuf"; version="0.4.20"; sha256="1q5wd586334472584r93whnwxy4yyycn9l891g6m6wh7v0884q76"; depends=[Rcpp]; }; + RProtoBuf = derive2 { name="RProtoBuf"; version="0.4.21"; sha256="0dskki6q5qmd2b53qgqhx4lzlji07g8q46aalkvj52pwisscm2x6"; depends=[Rcpp]; }; RPscoring = derive2 { name="RPscoring"; version="0.1.0"; sha256="063w83k9krwv3wvw2iq8bqkhjaj26as14d9g99l8jxfc02ljv1rr"; depends=[]; }; RPtests = derive2 { name="RPtests"; version="0.1.5"; sha256="04j4nqy2qxn1pa8ar0j0wgzkpd624983wwhd73l1ax7fnskx0yhh"; depends=[glmnet randomForest Rcpp]; }; RPublica = derive2 { name="RPublica"; version="0.1.3"; sha256="1w2pn1g44a00ls8kkzj53a739pq6vzp38px2k0yh10rlzimmb21l"; depends=[curl httr jsonlite]; }; RPushbullet = derive2 { name="RPushbullet"; version="0.3.4"; sha256="1mx433hvx660a63s5dzn655zmqv1c1qij0hzddl9z38032brc4ii"; depends=[curl jsonlite]; }; RPyGeo = derive2 { name="RPyGeo"; version="1.0.0"; sha256="1alqgx6blqqwxm76w05g82kc2icx8nvjw7qkdz73gf9ckgza5bb3"; depends=[magrittr purrr raster reticulate rmarkdown sf stringr]; }; RQEntangle = derive2 { name="RQEntangle"; version="0.1.3"; sha256="178haddk8nnscy2vym3k2a3ca9lf6nl7rpjja8lxqdjninvhvwb2"; depends=[iterators itertools]; }; - RQuantLib = derive2 { name="RQuantLib"; version="0.4.19"; sha256="1wbrfv061pbfkf0wv4aicwparj7ych4bpnf4gd32aj8s32jz63d4"; depends=[Rcpp zoo]; }; + RQuantLib = derive2 { name="RQuantLib"; version="0.4.20"; sha256="0pl4ggr09drzr60935j4md597fdp53p6cjd1885knm78syh5ansn"; depends=[Rcpp zoo]; }; RRBoost = derive2 { name="RRBoost"; version="0.1"; sha256="0zp3csrpi0awk88m6sq5sf5v7j32q5sd4mwv61x6bblg991k404k"; depends=[RobStatTM rpart]; }; RRF = derive2 { name="RRF"; version="1.9.4"; sha256="1kdyw0v1m3ajf88gzs70p6l6pic4g46ccwqxi9iznimayby6ygjb"; depends=[]; }; RRI = derive2 { name="RRI"; version="1.1"; sha256="0msdc5j5vx4snl8r3q5nn0mw2i80jds5pjykhmigcrx6jzg6h6i7"; depends=[Rcpp RcppArmadillo]; }; @@ -4325,31 +4411,30 @@ in with self; { RSA = derive2 { name="RSA"; version="0.10.6"; sha256="137izjrvicf02bnc6q00wn187754f25dh22swpb46vid18cf1q9h"; depends=[aplpack ggplot2 lattice lavaan plyr RColorBrewer]; }; RSADBE = derive2 { name="RSADBE"; version="1.0"; sha256="1nzpm88rrzavk0n8iflsx8r3s1xcry15n80zqdw6jijjycz10w1q"; depends=[]; }; RSAGA = derive2 { name="RSAGA"; version="1.4.0"; sha256="0mdirx7d3z4l0k54wa6rb1c5gma470ypifd3flj2287m8y2wjqq5"; depends=[gstat magrittr plyr shapefiles stringr]; }; - RSAlgaeR = derive2 { name="RSAlgaeR"; version="1.0.0"; sha256="1hp0v2vkj9ixiv541d53kyl0ph3jsdc5w98r81gv5ck5ixrp6bxp"; depends=[cvTools ggplot2 lubridate mblm plyr]; }; RSBJson = derive2 { name="RSBJson"; version="1.1.2"; sha256="1bzy0pgj6kg447xnnjj643hk8gyzzaaliiw0z98r19959bqbvgq3"; depends=[jsonlite]; }; RSC = derive2 { name="RSC"; version="2.0.4"; sha256="106pvrg10f8w0aqbnahqjdii49ijp2659l7kkj5y46pbr90lbpzs"; depends=[doParallel foreach Matrix]; }; RSCAT = derive2 { name="RSCAT"; version="1.1.3"; sha256="08p4gywh1g13mwcmvp046ybz410jyrzi505rdqr8yirjpk59bw1p"; depends=[ggplot2 gridExtra Metrics rJava shiny shinycssloaders shinyjs]; }; - RSDA = derive2 { name="RSDA"; version="3.1.0"; sha256="0xps9ivqgh64z26gbnsqr6cqr8q5ddc2dkfgl3bk6yrrlwp5fl0n"; depends=[dplyr e1071 FactoMineR forcats gbm ggplot2 ggpolypath glmnet kknn magrittr neuralnet nloptr princurve purrr randomcoloR randomForest reshape RJSONIO rlang rpart scales sqldf stringr tibble tidyselect umap vctrs XML]; }; + RSDA = derive2 { name="RSDA"; version="3.2.1"; sha256="10dx9ds7i738wydljkfw5jvggixsysbg2674hrw4z4lccgijjmrc"; depends=[dplyr e1071 FactoMineR forcats gbm ggplot2 ggpolypath ggrepel glmnet kknn magrittr neuralnet nloptr plotly princurve purrr randomcoloR randomForest reshape RJSONIO rlang rpart scales sqldf stringr tibble tidyselect umap vctrs XML xtable]; }; RSDK = derive2 { name="RSDK"; version="1.0.1"; sha256="1qsidmcb432aliwvcn3y14w538nnac1xp50z7a4vh68kqidwhrxp"; depends=[keys shiny shinyWidgets testthat]; }; RSE = derive2 { name="RSE"; version="1.3"; sha256="1dvmj1zwkbp1dj9r8kcvbd8rpknfwfdqaqc5gfl82bh823w72099"; depends=[]; }; RSEIS = derive2 { name="RSEIS"; version="4.1-6"; sha256="1vbsx09snyxsbaizqjb3m2xkk67pky3pwn8565m6fda9zdbkwjka"; depends=[RPMG Rwave]; }; RSGHB = derive2 { name="RSGHB"; version="1.2.2"; sha256="16s9iahbcdqykavm5cq8n76hlpfqlljl17xwh0vrz5ac7z4z3rdz"; depends=[MCMCpack]; }; RSKC = derive2 { name="RSKC"; version="2.4.2"; sha256="0r9gpwhzscb6rbba3dg13p78pvskahgvsd59biag0shyii3xvwpm"; depends=[flexclust]; }; - RSNNS = derive2 { name="RSNNS"; version="0.4-16"; sha256="1n1jl99n59m5zg6qbd8c679qkw3nzxnyda917kmr97m30kdmy88s"; depends=[Rcpp]; }; + RSNNS = derive2 { name="RSNNS"; version="0.4-17"; sha256="1z2slc2gxr3w7m1ybyd69axx1gi4fadjlkg066gf12b86bbmfia2"; depends=[Rcpp]; }; RSP = derive2 { name="RSP"; version="0.4"; sha256="126lag0i2k4fwlr7gnc9jfn63pyi6d6gzzmypyr6jk666pwsk5f6"; depends=[catR DT foreign ggplot2 GPArotation gt hornpa igraph lavaan ltm Metrics mirt MVN plyr polycor psych rJava rstudioapi scales semPlot shiny shinyBS shinycustomloader ShinyItemAnalysis shinyjs shinythemes shinyWidgets xlsx]; }; RSQL = derive2 { name="RSQL"; version="0.2.2"; sha256="1k0s32lcfr2ari7jrkspmzf9ygpz4h737yigz3lkwj5k2r9ls2ax"; depends=[DBI lgr R6]; }; - RSQLite = derive2 { name="RSQLite"; version="2.3.1"; sha256="1jil3wgfh1asfb9c4cr9qyr74wb9f87r7sa03kj187201hb3xlly"; depends=[bit64 blob cpp11 DBI memoise pkgconfig plogr]; }; - RSSL = derive2 { name="RSSL"; version="0.9.6"; sha256="11i6z2kmy0ddl7s8709w5q8aix8wgba4p4lmqlswnwznwaaj26mq"; depends=[cluster dplyr ggplot2 kernlab MASS Matrix quadprog Rcpp RcppArmadillo reshape2 scales tidyr]; }; + RSQLite = derive2 { name="RSQLite"; version="2.3.4"; sha256="1sy4zgacr7f7svv0a1vd7s40llk7g2989qwf19l6zkngncdwikbk"; depends=[bit64 blob cpp11 DBI memoise pkgconfig plogr rlang]; }; + RSSL = derive2 { name="RSSL"; version="0.9.7"; sha256="1am8xv0v5b2z87y8i7m1s41aq55fx30pdnhna5dj87fql5faydqx"; depends=[cluster dplyr ggplot2 kernlab MASS Matrix quadprog Rcpp RcppArmadillo reshape2 scales tidyr]; }; RSSOP = derive2 { name="RSSOP"; version="1.1"; sha256="119xrxpaf68qdb2kj2pbaja6im2nbxsgibb1bnlpnc3fcxkmqcsf"; depends=[]; }; RSSampling = derive2 { name="RSSampling"; version="1.0"; sha256="0p10l7qmksx4ysz1jb84f9nbqzig8wxhwy33yk8hq29nb5i4c9ik"; depends=[LearnBayes]; }; RSStest = derive2 { name="RSStest"; version="1.0"; sha256="1pywk326hycq9qm6hslircn8xb8irj3ava2aga20fp0n1jxnr8vi"; depends=[huxtable]; }; RSSthemes = derive2 { name="RSSthemes"; version="1.0.0"; sha256="091ch7fb3ndhjyk31igaafcsip207ycb7xkl4x114s06da0p521d"; depends=[ggplot2 purrr showtext sysfonts]; }; RSauceLabs = derive2 { name="RSauceLabs"; version="0.1.6"; sha256="1p7hw6vnlg6w5ggmfpc3q3s6n1fikjkjnxzz97jifiy0zwn5dp9i"; depends=[data_table httr jsonlite whisker xml2]; }; - RScelestial = derive2 { name="RScelestial"; version="1.0.3"; sha256="1bxp3xl90s9fblm6d2mmsnws4iv9f3kxj8cs55kmbakz5dq4nqxc"; depends=[Rcpp]; }; - RSclient = derive2 { name="RSclient"; version="0.7-9"; sha256="04xppfz2gxf21jmcz9phxpaxys06kqnw77v1sy9qqd3n0yywzihv"; depends=[]; }; + RScelestial = derive2 { name="RScelestial"; version="1.0.4"; sha256="018bw7rn0p0rg4wjci7ab6pqdmd87b0yp1ixfrjirqb2xgj332ay"; depends=[Rcpp]; }; + RSclient = derive2 { name="RSclient"; version="0.7-10"; sha256="1s6mpda9y6rhmwsc0i0x5kbafdrn056v80yj2ycvq4kf7kxf1hx5"; depends=[]; }; RSelenium = derive2 { name="RSelenium"; version="1.7.9"; sha256="18hd0gfpblg9ij99ik7ccc60q9dxha89n5rrwrrzx498c5sscjg2"; depends=[caTools httr wdman]; }; RSentiment = derive2 { name="RSentiment"; version="2.2.2"; sha256="15d1llzxg1apkwykpb7pic2d5lfj9i9a55hab067wrz2yq5jsyfa"; depends=[NLP openNLP plyr stringr]; }; - RSiena = derive2 { name="RSiena"; version="1.3.14.4"; sha256="1nl0qz3mvg8851lxh3xmq0hr4fs97yd8jv01lczvwzjzhmapv08j"; depends=[lattice MASS Matrix xtable]; }; + RSiena = derive2 { name="RSiena"; version="1.4.1"; sha256="1ysxy6kikyxklvfa95mn61wr0ny7wc849qw4wxadxg8wdx98z53x"; depends=[lattice MASS Matrix xtable]; }; RSiteCatalyst = derive2 { name="RSiteCatalyst"; version="1.4.16"; sha256="1plcmxj6sahdy3vvcmxry8cbq1j23bqzhnhn593bkwmzczka24cy"; depends=[base64enc digest httr jsonlite plyr stringr]; }; RSizeBiased = derive2 { name="RSizeBiased"; version="0.1.0"; sha256="0qh1f9998c62cph590mszbwh12mpbvcnvffmxw4mib6wd4dgl723"; depends=[pracma]; }; RSmallTelescopes = derive2 { name="RSmallTelescopes"; version="1.0.4"; sha256="16c0pfq9qp0c9b7aljp753iilk3dys14h77anwps8xg7j2lizvbh"; depends=[]; }; @@ -4366,19 +4451,18 @@ in with self; { RTDE = derive2 { name="RTDE"; version="0.2-1"; sha256="1dkv0g760384jmyypffl5kbnsancjx272j91ffpgmg3lmsy8nhqq"; depends=[]; }; RTFA = derive2 { name="RTFA"; version="0.1.0"; sha256="09vpyxqmzvkmznwgrm5d1y1rk7j5a2hnjmkczzg0bzij1c8bqkhn"; depends=[rTensor tensor]; }; RTIGER = derive2 { name="RTIGER"; version="2.1.0"; sha256="08gs26wv6jnd4rzdhb87as26aslgqs128x1ip8h9nmr3l9mwg5fq"; depends=[e1071 extraDistr GenomeInfoDb GenomicRanges ggplot2 IRanges JuliaCall qpdf reshape2 TailRank]; }; - RTL = derive2 { name="RTL"; version="1.3.4"; sha256="08wk1zd4nrp9zvmqbf9dw5s8mv2ggz4gbxz24blpaphwr045annj"; depends=[dplyr ggplot2 glue httr jsonlite lifecycle lubridate magrittr PerformanceAnalytics plotly purrr Rcpp readr rlang stringr tibble tidyr tidyselect timetk tsibble TTR xts zoo]; }; + RTL = derive2 { name="RTL"; version="1.3.5"; sha256="0ajdrwg8g68imwj21l9mh8q9n1xc00d8lxw60p6vnb39m730d8vg"; depends=[dplyr ggplot2 glue httr jsonlite lifecycle lubridate magrittr PerformanceAnalytics plotly purrr Rcpp readr rlang stringr tibble tidyr tidyselect timetk tsibble TTR xts zoo]; }; RTLknitr = derive2 { name="RTLknitr"; version="1.0.0"; sha256="125sx7gy8gnyhz15cjrmqwrh32w3nd49d8qwg0grj3q12v03i8ca"; depends=[bookdown gt knitr magrittr]; }; - RTMB = derive2 { name="RTMB"; version="1.3"; sha256="0w1pxqzp7793xm1qd1wg3q56sg13qq17njyy9lc4xcz4grm0cba4"; depends=[MASS Matrix Rcpp RcppEigen TMB]; }; - RTSA = derive2 { name="RTSA"; version="0.2.1"; sha256="19w521mww2byciw7gq9f1knyqmzwm93pmpwa1vf3hnsr65zgixw3"; depends=[ggplot2 metafor Rcpp scales]; }; + RTMB = derive2 { name="RTMB"; version="1.4"; sha256="0lbnwjh1bd9ryadsmax2gjbzh4fjjr4mm76g1xydq27b0y0411iz"; depends=[MASS Matrix Rcpp RcppEigen TMB]; }; + RTSA = derive2 { name="RTSA"; version="0.2.2"; sha256="1fkr374y7pjv99g2b0cdcr5qhfjnjwl52p39w4fvw7iv4ahvvxs1"; depends=[ggplot2 metafor Rcpp scales]; }; RTTWebClient = derive2 { name="RTTWebClient"; version="0.1.3"; sha256="1d4dmw7z90nih9bzajlyqgqvpfmpkxwyhw0w56q396kvw8k644cp"; depends=[base64enc data_table digest httr jsonlite withr]; }; RTaxometrics = derive2 { name="RTaxometrics"; version="3.2.1"; sha256="0f87r45lnygxxlwjq04q08ams7llnjlrfyavx81fbl2g26yp988l"; depends=[]; }; RTextTools = derive2 { name="RTextTools"; version="1.4.3"; sha256="0fxjviqc36k06rn8xzbi8ylzzj9zgf3zsp6xv0kssakss1a45lzz"; depends=[caTools e1071 glmnet ipred nnet randomForest SparseM tau tm tree]; }; RTransferEntropy = derive2 { name="RTransferEntropy"; version="0.2.21"; sha256="05n97mwaxjika81bwwbx6vrsshdcd8h0n28iji2q7qwkk0746imd"; depends=[future future_apply Rcpp]; }; - RTriangle = derive2 { name="RTriangle"; version="1.6-0.12"; sha256="1nvbbmvakxwi6w5f46i75yd9r70z5h24lnvkn20cqsb5jbx13mxy"; depends=[]; }; - RUVIIIC = derive2 { name="RUVIIIC"; version="1.0.19"; sha256="1px87p4nmdgkxwarsqyc91kmwr13dy16c1qqqc86qlwm2w46smf6"; depends=[progress Rcpp RcppEigen RcppProgress RSpectra]; }; + RTriangle = derive2 { name="RTriangle"; version="1.6-0.13"; sha256="1rbilz34fm8i6krvbpzhv3d0s1ix1lcc3n82jmhdddkvdh465pc6"; depends=[]; }; RUnit = derive2 { name="RUnit"; version="0.4.32"; sha256="1wc1gwb7yw7phf8b0gkig6c23klya3ax11c6i4s0f049k42r78r3"; depends=[]; }; RVA = derive2 { name="RVA"; version="0.0.5"; sha256="1a0av2vhqnkc4w76q5dhds0p12icmkkxyr1d04rsd83srwkwh4fb"; depends=[circlize clusterProfiler ComplexHeatmap data_table dplyr edgeR ggplot2 ggpubr gridExtra GSEABase GSVAdata haven msigdbr org_Hs_eg_db plotly purrr rlang rWikiPathways stringr tibble tidyr XML]; }; - RVAideMemoire = derive2 { name="RVAideMemoire"; version="0.9-83-3"; sha256="1jmfj2gql95l6ln55gbgm62z1x4g7jlfyysq0dyab1jjqsz5izip"; depends=[ade4 boot car FactoMineR lme4 MASS mixOmics nnet pls pspearman vegan]; }; + RVAideMemoire = derive2 { name="RVAideMemoire"; version="0.9-83-7"; sha256="1ix6v1m4h1wffvgmzhrzdgj5268z54bnd02wqivrjf32pi7s9vn5"; depends=[ade4 boot car FactoMineR lme4 MASS nnet pls pspearman vegan]; }; RVCompare = derive2 { name="RVCompare"; version="0.1.8"; sha256="0dqz0c3idy9nzb9mlmlnyq05zql0nca1na7qxbgk136g4spbr1n3"; depends=[ggplot2 pracma Rcpp]; }; RVIpkg = derive2 { name="RVIpkg"; version="0.3.2"; sha256="0s3fjagbd24cgymsfsjd0940kzyvla2cybsr0387q7l93lfr3rmd"; depends=[]; }; RVenn = derive2 { name="RVenn"; version="1.1.0"; sha256="016m00xv59lkwm2is32v5nr4lw5a1ymdnz34r3ffflcv9bfrc6n4"; depends=[ggforce ggplot2 magrittr pheatmap purrr rlang vegan]; }; @@ -4397,12 +4481,12 @@ in with self; { RYandexTranslate = derive2 { name="RYandexTranslate"; version="1.0"; sha256="0qrv5mnnkn5fs7vx6i74z46s0qj9f98km5bizgj00832qyrq8q1s"; depends=[httr jsonlite RCurl]; }; RZabbix = derive2 { name="RZabbix"; version="0.1.0"; sha256="0c5803chpzvp7dk9pjfx5f0nqynb76ywakz04ah2nw07ypvcyjyr"; depends=[httr jsonlite]; }; RZigZag = derive2 { name="RZigZag"; version="0.2.1"; sha256="1civ8qrk5y95775vzkd2m5arqczgan584r632ixy4q76nd5wa8zc"; depends=[Rcpp RcppEigen]; }; - RZooRoH = derive2 { name="RZooRoH"; version="0.3.2"; sha256="047j86kvhd9mama3lgyqyij6b7y4v23pycx63xnfh590drr8mnym"; depends=[data_table doParallel foreach iterators RColorBrewer]; }; + RZooRoH = derive2 { name="RZooRoH"; version="0.3.2.1"; sha256="02sz2hgddgws4qwwvqgcd470r7ffyzs88r90mnhjl3889a5ixkml"; depends=[data_table doParallel foreach iterators RColorBrewer]; }; RaJIVE = derive2 { name="RaJIVE"; version="1.0"; sha256="1r3csf3xpk6rx494bqamb9b8dhj1169cng6gdi52h62m8vchnak5"; depends=[doParallel foreach ggplot2]; }; - RaMS = derive2 { name="RaMS"; version="1.3.1"; sha256="1njlgzrsxaawic60v7yk80qrhq73cia8miiafsvfxf9gcldr5alp"; depends=[base64enc data_table xml2]; }; + RaMS = derive2 { name="RaMS"; version="1.3.4"; sha256="10r59h8dxv39gl432rs3xwasym94xbdpwdclsbzfyxm0cyi2vfmm"; depends=[base64enc data_table xml2]; }; RaSEn = derive2 { name="RaSEn"; version="3.0.0"; sha256="1a7jvyvvhzn4aifnhjldn5jr6sxh16b67x335p8wh8g24yvvglvw"; depends=[caret class doParallel e1071 FNN foreach formatR ggplot2 glmnet gridExtra KernelKnn MASS ModelMetrics nnet randomForest ranger rpart]; }; - RaceID = derive2 { name="RaceID"; version="0.3.3"; sha256="0fxganfx4zw1hb5qy3hy7d55i11s9xi5nsa8c7mzmwacdsdhr0yv"; depends=[cluster coop FateID FNN fpc ggplot2 harmony ica igraph irlba leiden locfit MASS Matrix matrixStats pheatmap princurve quadprog randomForest RColorBrewer Rcpp Rtsne runner umap vegan]; }; - Racmacs = derive2 { name="Racmacs"; version="1.2.7"; sha256="01grlw91s9pbi6b65y134b5qsv55y7j6m8fgj0gqpigxjqi7ryq5"; depends=[brotli dplyr ellipsis ggplot2 htmltools htmlwidgets igraph jsonlite ks magrittr MASS rapidjsonr Rcpp RcppArmadillo RcppEnsmallen RcppProgress rlang rmarchingcubes shape shiny shinyFiles shinyjs vctrs]; }; + RaceID = derive2 { name="RaceID"; version="0.3.4"; sha256="10hbgnd7kvs6a3w6jxs78w7b6si3nghbrzfyv3ipflpv37zs8fay"; depends=[cluster coop FateID FNN fpc ggplot2 harmony ica igraph irlba leiden locfit MASS Matrix matrixStats pheatmap princurve quadprog randomForest RColorBrewer Rcpp Rtsne runner umap vegan]; }; + Racmacs = derive2 { name="Racmacs"; version="1.2.9"; sha256="0csrbmri44ykrrx25a21hnqca74w6hvsiza43k7jix26bchysynl"; depends=[brotli dplyr ellipsis ggplot2 htmltools htmlwidgets igraph jsonlite ks magrittr MASS rapidjsonr Rcpp RcppArmadillo RcppEnsmallen RcppProgress rlang rmarchingcubes shape shiny shinyFiles shinyjs vctrs]; }; RadData = derive2 { name="RadData"; version="1.0.1"; sha256="053i6r0j58dws1qisl2701n0fwzrfn5brdx3dcab8xmpzg6s0036"; depends=[]; }; RadOnc = derive2 { name="RadOnc"; version="1.1.8"; sha256="0nc8f2f2yvfvx81xm87zr08asisyar9zdx3fwqz0lvz5xgrwkp3x"; depends=[oro_dicom ptinpoly]; }; RadialVisGadgets = derive2 { name="RadialVisGadgets"; version="0.2.0"; sha256="18a2c89jpdaln9cl5y4w161121fld08wm57m40qacsj1vlnkh6j9"; depends=[caret dplyr ggplot2 miniUI r_import rlang shiny shinyjs shinyscreenshot tidyr]; }; @@ -4439,7 +4523,7 @@ in with self; { Ravages = derive2 { name="Ravages"; version="1.1.3"; sha256="0scfxzfisqcj9zn50pvhy9xrl3k5bgglp11gqxf885yskdiwrkik"; depends=[bedr BH curl data_table dfidx Formula gaston mlogit Rcpp RcppEigen RcppParallel]; }; RavenR = derive2 { name="RavenR"; version="2.2.0"; sha256="17m6q6v3s3maj3wlic9id4bll4n3waa34sj8580l1kd5knhybmil"; depends=[colorspace cowplot crayon DiagrammeR dplyr dygraphs gdata ggplot2 igraph lubridate magrittr purrr Rcpp RCurl scales stringr tidyr visNetwork xts zoo]; }; RawHummus = derive2 { name="RawHummus"; version="0.3.3"; sha256="0m88cywxwwiyvr2i7ipi9yf5znzdjfsmgz2x0ry4d6mm5469rws4"; depends=[config data_table dplyr ggplot2 golem kableExtra markdown plotly purrr RaMS RColorBrewer rmarkdown shiny shinycustomloader shinydashboard shinydashboardPlus shinyMatrix]; }; - Rbeast = derive2 { name="Rbeast"; version="0.9.9"; sha256="1can7nlh5vg0imgid4p2zvffz507f716aa7krkyqmfpmw2wg9nc1"; depends=[]; }; + Rbeast = derive2 { name="Rbeast"; version="1.0.0"; sha256="1k36rinhm8r6czk60f51p2d895g280k6qrr6qkcqc33l60jl6khi"; depends=[]; }; Rbent = derive2 { name="Rbent"; version="0.1.0"; sha256="0xkb57dhhfd3342rv0xwbhbhn4zp5fbfch84fbh0sickm09l9vrj"; depends=[Rfit]; }; RblDataLicense = derive2 { name="RblDataLicense"; version="0.2.5"; sha256="05xwk8j8qgy89vg1dkjwslbbbb3nrqagbiwag8giyzifx7w0gfsp"; depends=[RCurl xts]; }; Rblpapi = derive2 { name="Rblpapi"; version="0.3.14"; sha256="1xrfz5f7vibsfdn0v3mg7rvbn31j9znqk902cb1fwbqfqnkxw9yx"; depends=[BH Rcpp]; }; @@ -4450,25 +4534,24 @@ in with self; { RcausalEGM = derive2 { name="RcausalEGM"; version="0.3.3"; sha256="089mgi96p4dv7ja629mz5d0ij488y6fi84x73fdq67xars6abqla"; depends=[reticulate]; }; Rcereal = derive2 { name="Rcereal"; version="1.2.1.1"; sha256="16gak1kgsnla89b6nbhfb5w9xfjhdpxza8sfc2isbhfggvl1h79j"; depends=[]; }; RcextTools = derive2 { name="RcextTools"; version="0.1.1"; sha256="1rrij4ryspff9mn1c3jlzjprnipak7nzlb488pk0ci0awaccp5ga"; depends=[data_table igraph sqldf visNetwork]; }; - Rcgmin = derive2 { name="Rcgmin"; version="2022-4.30"; sha256="04dr5w8ss004fk0w814x4hb78i7l3h1q5r00pjps43cpzgkvi116"; depends=[optextras]; }; - RchivalTag = derive2 { name="RchivalTag"; version="0.1.8"; sha256="14pv7a2qsqxp28sb59dh9s554yy55x7i9129mrgk0fxv5c64lq8m"; depends=[cleangeo dygraphs ggedit ggplot2 htmlwidgets leaflet leaflet_extras2 lubridate mapdata maps ncdf4 oceanmap plotly plyr pracma raster readr sf shiny sp stringr suntools xts]; }; + RchivalTag = derive2 { name="RchivalTag"; version="0.1.9"; sha256="0sz6hmcpsgp5am5g89q15was8im6wr2c18fjsychjxngj6ii0cy0"; depends=[cleangeo dygraphs ggedit ggplot2 htmlwidgets leaflet leaflet_extras2 lubridate mapdata maps ncdf4 oceanmap plotly plyr pracma raster readr sf shiny sp stringr suntools xts]; }; Rchoice = derive2 { name="Rchoice"; version="0.3-6"; sha256="0f9pdxymbj6fnq7368sl48pg5a2ikjkn10qm5djrqwwyhir64wf3"; depends=[Formula maxLik memisc miscTools msm numDeriv plm plotrix sandwich]; }; RclusTool = derive2 { name="RclusTool"; version="0.91.5"; sha256="1ni3ykd7klmw1cs49n22x4p6k2ghqqs7fd1hq5xjlwdwdnh9ssxm"; depends=[class cluster conclust corrplot e1071 factoextra FactoMineR ggplot2 jpeg knitr MASS mclust mda mmand nnet png randomForest reshape rlang SearchTrees sp stringi stringr tcltk2 tkrplot]; }; Rcmdr = derive2 { name="Rcmdr"; version="2.9-1"; sha256="03b7jg75sq9sv0yi5ish0pp028av9v7pnjxb8m11swacw635m0yh"; depends=[abind car effects lme4 RcmdrMisc relimp tcltk2]; }; RcmdrMisc = derive2 { name="RcmdrMisc"; version="2.9-1"; sha256="0khp8dw1b3v5jqbhnqxjcyyjz9hj9pb98niacn17cf9iln9rr7mc"; depends=[abind car colorspace e1071 foreign haven Hmisc lattice MASS nortest readstata13 readxl sandwich]; }; - RcmdrPlugin_BWS1 = derive2 { name="RcmdrPlugin.BWS1"; version="0.1-5"; sha256="1rwfmkpalyhmdfhwszk9q21l362qwq305b3jqh0nrwmmnr09v34w"; depends=[crossdes Rcmdr support_BWS support_CEs survival]; }; - RcmdrPlugin_BWS2 = derive2 { name="RcmdrPlugin.BWS2"; version="0.1-0"; sha256="0px17h5i7pgm3pvrsf5rd8cpylsis65fndk1s7341dxxy4b4z7kj"; depends=[DoE_base Rcmdr support_BWS2 support_CEs survival]; }; - RcmdrPlugin_BWS3 = derive2 { name="RcmdrPlugin.BWS3"; version="0.1-0"; sha256="0qysk8800pslkc3lf7nkxc6xwsbc0516h3rkqgdb9x7l0557vbpx"; depends=[Rcmdr support_BWS3 support_CEs survival]; }; + RcmdrPlugin_BWS1 = derive2 { name="RcmdrPlugin.BWS1"; version="0.2-0"; sha256="0x9myvv21lwrr301kz162l2ifc7s3azkkqznf4izdl9yganq8301"; depends=[crossdes Rcmdr support_BWS support_CEs survival]; }; + RcmdrPlugin_BWS2 = derive2 { name="RcmdrPlugin.BWS2"; version="0.2-0"; sha256="068ns6580wqjwj3g3hviri87wkslm4fsk4nqblz559s8g1ipikqz"; depends=[DoE_base Rcmdr support_BWS2 support_CEs survival]; }; + RcmdrPlugin_BWS3 = derive2 { name="RcmdrPlugin.BWS3"; version="0.2-1"; sha256="1hc0chajvpf0vvmwfmj8ps7wvb4bfglkx3zy845jpz9py90dbhdy"; depends=[Rcmdr support_BWS3 support_CEs survival]; }; RcmdrPlugin_BiclustGUI = derive2 { name="RcmdrPlugin.BiclustGUI"; version="1.1.3.1"; sha256="1wb1pbwghq1xxpwlihfixx42yf1f1py3hdwh8sfpqklh63ymwifk"; depends=[BcDiag BiBitR BicARE biclust fabia gplots iBBiG Rcmdr s4vd superbiclust viridis]; }; - RcmdrPlugin_DCCV = derive2 { name="RcmdrPlugin.DCCV"; version="0.1-2"; sha256="1gqjprdz842yzp3n3a4c4zrv6bk7kdqcspmljn234nrzyz08ji6a"; depends=[DCchoice Rcmdr]; }; - RcmdrPlugin_DCE = derive2 { name="RcmdrPlugin.DCE"; version="0.1-3"; sha256="0mlm3avhfvdzaxfiiy67r2p3h5409qqy1wm05263i4kmvxvbxazy"; depends=[Rcmdr support_CEs survival]; }; + RcmdrPlugin_DCCV = derive2 { name="RcmdrPlugin.DCCV"; version="0.1-3"; sha256="13dl79xkr3y2p2qigmnl7hq1lw4i99f3b03q6dc15yihb593za4i"; depends=[DCchoice Rcmdr]; }; + RcmdrPlugin_DCE = derive2 { name="RcmdrPlugin.DCE"; version="0.2-1"; sha256="033inak78bsrf3jn1z3bhmjrspsskm54s0bskm9g8vs9avzav8i1"; depends=[Rcmdr support_CEs survival]; }; RcmdrPlugin_DoE = derive2 { name="RcmdrPlugin.DoE"; version="0.12-5"; sha256="0nsaj3wis8fn73spyv90j0magcl3lq4pznfxzdr62rg8w7likqx7"; depends=[DoE_base DoE_wrapper FrF2 Rcmdr RcmdrMisc]; }; RcmdrPlugin_EACSPIR = derive2 { name="RcmdrPlugin.EACSPIR"; version="0.2-3"; sha256="0v7pw0m8cxpnkdm47b8jb3z94p1igi98s4r8i0gm7x7ad4fzccww"; depends=[abind ez nortest R2HTML Rcmdr RcmdrMisc reshape]; }; RcmdrPlugin_EBM = derive2 { name="RcmdrPlugin.EBM"; version="1.0-10"; sha256="02zips1jbfn7cshjlrm1gr632px2zxlys8i0f1nrf1gifl44v1qw"; depends=[abind epiR Rcmdr]; }; - RcmdrPlugin_EZR = derive2 { name="RcmdrPlugin.EZR"; version="1.61"; sha256="1d97lans5w14scfn4z0nxpgfdlmspbzq2c6vl02pf5z3rrqfnbrq"; depends=[Rcmdr readstata13]; }; + RcmdrPlugin_EZR = derive2 { name="RcmdrPlugin.EZR"; version="1.63"; sha256="16bh5dl2mp377kvizsh56bgj4n71wq0fbg9x14g828xfb9qfwpp6"; depends=[Rcmdr readstata13]; }; RcmdrPlugin_EcoVirtual = derive2 { name="RcmdrPlugin.EcoVirtual"; version="1.0"; sha256="0q879wnrmgbaddv883q9zdnp0i7kjcgn8cffv7lp8nrsqil6l7mc"; depends=[EcoVirtual Rcmdr]; }; RcmdrPlugin_Export = derive2 { name="RcmdrPlugin.Export"; version="0.3-1"; sha256="17fn3si6b6h20c52k1k6fv9mslw3f9v0x1kxixzcvq54scdx0sk0"; depends=[Hmisc Rcmdr xtable]; }; - RcmdrPlugin_FactoMineR = derive2 { name="RcmdrPlugin.FactoMineR"; version="1.7"; sha256="1145rpzhq219sl0j2bg5xa0ihq13lmr7ahcn3db4a8mqlz2fp8zy"; depends=[FactoMineR Rcmdr]; }; + RcmdrPlugin_FactoMineR = derive2 { name="RcmdrPlugin.FactoMineR"; version="1.8"; sha256="1fr50yfjh1iy65lkvkw992l02q0vgrw2advj707z02806p69bkn1"; depends=[FactoMineR Rcmdr]; }; RcmdrPlugin_GWRM = derive2 { name="RcmdrPlugin.GWRM"; version="1.0.2"; sha256="01q4k9s815pgd5cavm6nyxy5npmpxryari9v6wys4n5cjpn5g6xq"; depends=[GWRM Rcmdr RcmdrMisc]; }; RcmdrPlugin_HH = derive2 { name="RcmdrPlugin.HH"; version="1.1-47"; sha256="1bba11izs1jhjsyb0d45c34gcihapk231qbiabcxf8x93sdmg6ga"; depends=[HH lattice mgcv Rcmdr]; }; RcmdrPlugin_KMggplot2 = derive2 { name="RcmdrPlugin.KMggplot2"; version="0.2-6"; sha256="0xh0lfgmr5sc15f3v5avwy1zl0gk1krlw3jb1prjyk9prp8albz9"; depends=[ggplot2 ggthemes plyr Rcmdr RColorBrewer scales survival tcltk2]; }; @@ -4478,9 +4561,9 @@ in with self; { RcmdrPlugin_PcaRobust = derive2 { name="RcmdrPlugin.PcaRobust"; version="1.1.4"; sha256="17rq3sv8payazjjn5j37cgd6df5b62d2y8al3grw6hw5nfba7lvn"; depends=[Rcmdr robustbase rrcov tkrplot]; }; RcmdrPlugin_RMTCJags = derive2 { name="RcmdrPlugin.RMTCJags"; version="1.0-2"; sha256="04g5a1dpch54k5ckfkrg4vsap1nc3af1i0i559qigv3hy8n7pm80"; depends=[coda igraph Rcmdr rjags rmeta runjags]; }; RcmdrPlugin_ROC = derive2 { name="RcmdrPlugin.ROC"; version="1.0-19"; sha256="1m5k8y2xy78bpyvi2cdnvmicr5dkjxb8v65blcmgrhf7i0zhhj5p"; depends=[pROC Rcmdr ResourceSelection]; }; - RcmdrPlugin_RiskDemo = derive2 { name="RcmdrPlugin.RiskDemo"; version="3.0"; sha256="1l065hqcd84vl0147yyysyyh7k45rypzlrfrn16c9486ynjkbc45"; depends=[data_table demography dplyr forecast ftsa ggplot2 Rcmdr scales zoo]; }; + RcmdrPlugin_RiskDemo = derive2 { name="RcmdrPlugin.RiskDemo"; version="3.1"; sha256="03mqjb5jnpnbvbrliv6bk7kmlwbbhgf3fpbmb8vhncpld19lfsgp"; depends=[data_table demography dplyr forecast ftsa ggplot2 Rcmdr scales zoo]; }; RcmdrPlugin_SCDA = derive2 { name="RcmdrPlugin.SCDA"; version="1.2.0"; sha256="1yg2b5vcnf956w04phxg15a4my9hvkbc27nzyn30b2wn47ysxghj"; depends=[Rcmdr SCMA SCRT SCVA]; }; - RcmdrPlugin_TeachStat = derive2 { name="RcmdrPlugin.TeachStat"; version="1.1.2"; sha256="04b933icpf6lzzbd1z0p0qzy0w2d4p9rv6zs16gx5l89vagvg4wh"; depends=[distr distrEx Hmisc IndexNumR lme4 Rcmdr tcltk2 tseries]; }; + RcmdrPlugin_TeachStat = derive2 { name="RcmdrPlugin.TeachStat"; version="1.1.3"; sha256="1l73zpy94av30x31rskzggaf6bmj7wfx1k6mksmpjmy47hk07qlg"; depends=[distr distrEx Hmisc IndexNumR lme4 Rcmdr tcltk2 tseries]; }; RcmdrPlugin_TeachingDemos = derive2 { name="RcmdrPlugin.TeachingDemos"; version="1.2-0"; sha256="14zsqjni2w2smq99cv1pjdw90zw83g4nn7h7cn07fms9j0g12yd6"; depends=[Rcmdr TeachingDemos]; }; RcmdrPlugin_UCA = derive2 { name="RcmdrPlugin.UCA"; version="5.1-1"; sha256="15z2pyi92vznkbfqycc33b39dl2wx0kf2l5w1wv8pr85i5449dzq"; depends=[IQCC qcc qicharts2 randtests Rcmdr rmarkdown TeachingDemos tseries]; }; RcmdrPlugin_WorldFlora = derive2 { name="RcmdrPlugin.WorldFlora"; version="1.3"; sha256="1rcmn5drv3q09v9hz383010g8377lfiazhjq1vd0f90gf0nl5jfy"; depends=[Rcmdr WorldFlora]; }; @@ -4494,29 +4577,30 @@ in with self; { RcmdrPlugin_temis = derive2 { name="RcmdrPlugin.temis"; version="0.7.10"; sha256="02rs5xdj6g57frndc87fly0ans16584j4d0rfpy1h72655cz66ab"; depends=[ca lattice latticeExtra NLP R2HTML Rcmdr RColorBrewer slam stringi tcltk2 tm zoo]; }; Rcompadre = derive2 { name="Rcompadre"; version="1.3.0"; sha256="0ca82svcycz2qwk1hx808pm4d86z7i61hc427fkvknjj73vaiz5a"; depends=[popdemo tibble]; }; Rcplex = derive2 { name="Rcplex"; version="0.3-6"; sha256="01254ygn661zp0h6xf04vw77vppm54y3g8fcmcxfj4m36nk7jc01"; depends=[slam]; }; - Rcpp = derive2 { name="Rcpp"; version="1.0.11"; sha256="0pzssba79z90rax2v02r5m1a6ysljfnvq03r6q2nr72rd0q7qxfz"; depends=[]; }; + Rcpp = derive2 { name="Rcpp"; version="1.0.12"; sha256="1l1b0q2r6q2bjr4wvj98kp9844fyrsn2ppx339v05vmy8g65jwqc"; depends=[]; }; Rcpp11 = derive2 { name="Rcpp11"; version="3.1.2.0.1"; sha256="0vw41plcl7hbi0af3la0sb4x8zqnhxjpjslx8r8cllfamy9dixki"; depends=[]; }; RcppAPT = derive2 { name="RcppAPT"; version="0.0.9"; sha256="03q2i1b9lrb0sn0vq4jyqjiy2zwi2ydhzlnw1b8nj9xdfxx804mx"; depends=[Rcpp]; }; - RcppAlgos = derive2 { name="RcppAlgos"; version="2.8.2"; sha256="1h9kgr8776q7dvc0a2cylixhvk0xw3fq6lpyf15xajbbypxy9bzz"; depends=[cpp11 gmp]; }; + RcppAlgos = derive2 { name="RcppAlgos"; version="2.8.3"; sha256="0ppix426yg8rnh07z2clv634ynvvwmjlsjnsxh3srss6xa8yfrb0"; depends=[cpp11 gmp]; }; RcppAnnoy = derive2 { name="RcppAnnoy"; version="0.0.21"; sha256="1xzhax5hmn79h6kmz7inrlaya5mdpzqj6j7n5ridyzc4vcrs412q"; depends=[Rcpp]; }; - RcppArmadillo = derive2 { name="RcppArmadillo"; version="0.12.6.4.0"; sha256="1k7xq2yl4pkc7krz1bcdnx5kfj6n4zjmnm40nly2da2ji87agv49"; depends=[Rcpp]; }; - RcppArray = derive2 { name="RcppArray"; version="0.2.0"; sha256="1a8gjvzad38d234vp5a4ca5hb1cdyijlwb0l6hgwpr04h9bm539v"; depends=[Rcpp]; }; + RcppArmadillo = derive2 { name="RcppArmadillo"; version="0.12.6.6.1"; sha256="1h7z1l2zf4qv8azi9c4wj0klshhcqihpabvjhln7ra61i8lvssls"; depends=[Rcpp]; }; + RcppArray = derive2 { name="RcppArray"; version="0.3.0"; sha256="0n32nqqa2cdx0lams95yhdij837asbs6kmaahnf2hm6q0pnwbj43"; depends=[Rcpp]; }; RcppBDT = derive2 { name="RcppBDT"; version="0.2.6"; sha256="11l70rlayg2xzmg34sg3896adzpfpvplciyicjpk963bddjb2ys8"; depends=[BH Rcpp]; }; RcppBigIntAlgos = derive2 { name="RcppBigIntAlgos"; version="1.1.0"; sha256="0b83c5s6zpvf545yvpa3fa0nhgvrryg7n11l9200azi897zmlwv3"; depends=[cpp11 gmp]; }; RcppCCTZ = derive2 { name="RcppCCTZ"; version="0.2.12"; sha256="1jr4hi3zbm935q6ykkvnywlma36d3jl7fxmqhxs62jxbnyyqf81a"; depends=[Rcpp]; }; - RcppCNPy = derive2 { name="RcppCNPy"; version="0.2.11"; sha256="0m9g37hrx33mmxhhzi6qakgiqh6w0c2s624fkgbny9vcabr3dfsx"; depends=[Rcpp]; }; - RcppCWB = derive2 { name="RcppCWB"; version="0.6.2"; sha256="0038vpziiyydbymdi9krs49bwr7h574srdrvsbwvxr8cackzrmiv"; depends=[fs Rcpp]; }; + RcppCGAL = derive2 { name="RcppCGAL"; version="5.6.0"; sha256="114xwy3z7ca5xiv0dgk9n4qmynj68fdil3kp3w3yhbdqs36sismj"; depends=[Rcpp]; }; + RcppCNPy = derive2 { name="RcppCNPy"; version="0.2.12"; sha256="16n3c2pfz9i95ngalxc5wvigwd1jfi2qwqm1v605qhidgf2vqvc5"; depends=[Rcpp]; }; + RcppCWB = derive2 { name="RcppCWB"; version="0.6.3"; sha256="04r66z6xy6m9rsf0vj3yy0aijrgkcnl2r8nznc5fqwvcnx0lgx46"; depends=[fs Rcpp]; }; RcppCensSpatial = derive2 { name="RcppCensSpatial"; version="0.3.0"; sha256="0ghywbg2zrhd72y3hf99niqlw04gvfzfa02pa581lvvd67z19gjp"; depends=[ggplot2 gridExtra MomTrunc mvtnorm Rcpp RcppArmadillo RcppProgress Rdpack relliptical roptim StempCens]; }; RcppClassic = derive2 { name="RcppClassic"; version="0.9.13"; sha256="18kn9r7h5qqf6a6f28rjynrvp0yg0v82hxyv9z6cg254qnzd3bvj"; depends=[Rcpp]; }; - RcppClassicExamples = derive2 { name="RcppClassicExamples"; version="0.1.2"; sha256="0dr2104miy7psr73nicfs84652ai0d5liw6wxcwyrx7fmys3p638"; depends=[Rcpp RcppClassic]; }; + RcppClassicExamples = derive2 { name="RcppClassicExamples"; version="0.1.3"; sha256="1pri4m8vs8d0k4d2dr8jqg599b43m6hx58aip7kdmhbsvh0ak9ip"; depends=[Rcpp RcppClassic]; }; RcppClock = derive2 { name="RcppClock"; version="1.1"; sha256="0h59s6f9ib6d2n1fi94bcbqw0gcpbd5zvnc3pk4kb9lm7ih4dw7b"; depends=[ggplot2 Rcpp]; }; RcppColors = derive2 { name="RcppColors"; version="0.6.0"; sha256="0aacr00sjilh5smh3hxlmgjdf1w6vjm788kr6r1gigm7nj3w2sjy"; depends=[Rcpp]; }; RcppDE = derive2 { name="RcppDE"; version="0.1.7"; sha256="1846pl9gxikycdvwfgy1gw41z0fx4ycjp5p4295v8k2pgvlqw8sa"; depends=[Rcpp RcppArmadillo]; }; RcppDate = derive2 { name="RcppDate"; version="0.0.3"; sha256="1nwb4fdjxwn0c1ckj1fpsxl2hxk5z3sk3y5giwgdag6nfv7yfplw"; depends=[]; }; RcppDist = derive2 { name="RcppDist"; version="0.1.1"; sha256="02g57xwfipdcljv06krhm02dbqn9kfyj2km6rdg0a7vq9prwdz1x"; depends=[Rcpp RcppArmadillo]; }; RcppDynProg = derive2 { name="RcppDynProg"; version="0.2.1"; sha256="0zwm06riw0sc1qywmk8mfgay7lvzx8cmb7cijrr821j2sd0y2pyh"; depends=[Rcpp RcppArmadillo wrapr]; }; - RcppEigen = derive2 { name="RcppEigen"; version="0.3.3.9.3"; sha256="0xhwgn77166ir7qnzl25mj0byskkqr0b36hihrpr2zaqsrzs8wsq"; depends=[Matrix Rcpp]; }; - RcppEnsmallen = derive2 { name="RcppEnsmallen"; version="0.2.20.0.1"; sha256="0vraa320ymja472fijvxybgj8s1r4blfd1z06ffiw7drn5ch9zbk"; depends=[Rcpp RcppArmadillo]; }; + RcppEigen = derive2 { name="RcppEigen"; version="0.3.3.9.4"; sha256="1faz1phvg7g14bchi88vizn5mfhgiwmsjg7jzkyf1yjg0f6vpsj1"; depends=[Rcpp]; }; + RcppEnsmallen = derive2 { name="RcppEnsmallen"; version="0.2.21.0.1"; sha256="1rmvsysgvjmbasq0nc1vvm9v84yg5jsczb085z9yd9zh70g2zxnv"; depends=[Rcpp RcppArmadillo]; }; RcppExamples = derive2 { name="RcppExamples"; version="0.1.9"; sha256="0568zipgjxgmx086mlfpp5n7v8kf50gwrylvhl1bgvzb2vvr9dhj"; depends=[Rcpp]; }; RcppFarmHash = derive2 { name="RcppFarmHash"; version="0.0.3"; sha256="1gl9mnmcai8d0qclk1660z1mnzqcydxv88836vnpz9q008a1y8fk"; depends=[Rcpp RcppInt64]; }; RcppFastAD = derive2 { name="RcppFastAD"; version="0.0.2"; sha256="020hw5p3vjsi00fmrbwnkdjc4lajpfjp1j0f5wiyk2d61yypfz2i"; depends=[Rcpp RcppEigen]; }; @@ -4527,7 +4611,7 @@ in with self; { RcppHMM = derive2 { name="RcppHMM"; version="1.2.2"; sha256="0scdzmns1yw2gbarblzd6cbvndlysz54ff17qijiz17ql5cyzly6"; depends=[Rcpp RcppArmadillo]; }; RcppHNSW = derive2 { name="RcppHNSW"; version="0.5.0"; sha256="0sb9g41lk2f7fj0hpg9qvyp6gbvwlcjpi9gxs3lh3xxfzrnap5w9"; depends=[Rcpp]; }; RcppHungarian = derive2 { name="RcppHungarian"; version="0.3"; sha256="00wxi77ajnhwds1pnmhbxaykdaiyh6ayblif58sx9r5rvv055c1a"; depends=[Rcpp]; }; - RcppInt64 = derive2 { name="RcppInt64"; version="0.0.3"; sha256="0drfnsgjaac91g44cjvyrmw1fm75kdz7na8sikglx3k5vq0l1gb9"; depends=[Rcpp]; }; + RcppInt64 = derive2 { name="RcppInt64"; version="0.0.4"; sha256="1gfd4jsg5dvl2pzyqwi2vk16i06hgcskz2a9v7fw79ch80mcnf1c"; depends=[Rcpp]; }; RcppJagger = derive2 { name="RcppJagger"; version="0.0.2"; sha256="1zzc7vkwylwwgrbak2z32629gbl5jq2gdfc9qq0a8fk7c7rvk988"; depends=[cli purrr Rcpp rlang]; }; RcppML = derive2 { name="RcppML"; version="0.3.7"; sha256="1ih8i7i6m221iw227mnl3rvnaw2l53h8fpnc4f8yn9sm10anap1j"; depends=[Matrix Rcpp RcppEigen]; }; RcppMeCab = derive2 { name="RcppMeCab"; version="0.0.1.2"; sha256="0varavfbrqzma176rw0dr9v5chh7pxh5y9g0rs3v7hqnlghp22y2"; depends=[BH Rcpp RcppParallel]; }; @@ -4536,12 +4620,12 @@ in with self; { RcppNumerical = derive2 { name="RcppNumerical"; version="0.6-0"; sha256="11nph9fz1bzb0pcvh6xx4cb94090ahwpj21zmbi06m4pibb1a1rg"; depends=[Rcpp RcppEigen]; }; RcppParallel = derive2 { name="RcppParallel"; version="5.1.7"; sha256="175j0plh9gzy45sxsck0wdqfkjwdsbb17m9511czrgqsrswhxhzr"; depends=[]; }; RcppProgress = derive2 { name="RcppProgress"; version="0.4.2"; sha256="0j2b37gwjpgmrnr00srdzm751hzlpsjb54ph63xxmcdfnwhlnqmi"; depends=[]; }; - RcppQuantuccia = derive2 { name="RcppQuantuccia"; version="0.1.1"; sha256="06ahzp0rvk3wrrj46dmszkmpnybaa5hrpbs2cs5h3jn633k67zj6"; depends=[BH Rcpp]; }; + RcppQuantuccia = derive2 { name="RcppQuantuccia"; version="0.1.2"; sha256="1nih426bcd872vyx6dyinr8nr8hqgbqfzih4v82qqi9b9xlk2mv2"; depends=[BH Rcpp]; }; RcppRedis = derive2 { name="RcppRedis"; version="0.2.4"; sha256="1n705sqxxzd4p3zi1xplc6y15pnvqh998y4k9hr032g44lk9q7y9"; depends=[RApiSerialize Rcpp]; }; RcppRoll = derive2 { name="RcppRoll"; version="0.3.0"; sha256="0srzfhzkk42kzrdjnhbb37946jp1p688rgysy6k3i2is8jb21zyb"; depends=[Rcpp]; }; RcppSMC = derive2 { name="RcppSMC"; version="0.2.7"; sha256="0rp5s8j72al39rihn0q0j0ws6l1bxl1hlbx31mjllzhiq03pn2mq"; depends=[FKF Rcpp RcppArmadillo]; }; - RcppSimdJson = derive2 { name="RcppSimdJson"; version="0.1.10"; sha256="1wfhn4lm1538053hr4nk8mqbx3r9lq4p98fk6vw6b9xv84sxsicl"; depends=[Rcpp]; }; - RcppSpdlog = derive2 { name="RcppSpdlog"; version="0.0.14"; sha256="1n63mz2rr63kz3v7mg6n4cvw2lrw1ffk7xvln1j1005argvzvd4c"; depends=[Rcpp]; }; + RcppSimdJson = derive2 { name="RcppSimdJson"; version="0.1.11"; sha256="1q5gqa1pp71f952wvl1fpw9r2qm92112x5irw1splf3y6k6m4r6h"; depends=[Rcpp]; }; + RcppSpdlog = derive2 { name="RcppSpdlog"; version="0.0.15"; sha256="0s2mmzy36kndshgbp0q89a0jnx3m7jd2gd54kc2qijxpdm628d63"; depends=[Rcpp]; }; RcppStreams = derive2 { name="RcppStreams"; version="0.1.3"; sha256="06il7q3afaws57m0fxf04f2p5dvs23l1f7gl78pxwzclacdy3839"; depends=[BH Rcpp]; }; RcppTN = derive2 { name="RcppTN"; version="0.2-2"; sha256="0m2wc5n1fzxv56s4gqqnygb24dbadgrpgjm4bs4hr6qazgjapymf"; depends=[Rcpp]; }; RcppTOML = derive2 { name="RcppTOML"; version="0.2.2"; sha256="1ak3dwzdrmq9kd30i12fy582rsn5xfljw214liv1w8l2rbwr24rp"; depends=[Rcpp]; }; @@ -4555,14 +4639,14 @@ in with self; { Rcriticor = derive2 { name="Rcriticor"; version="2.0"; sha256="1cnmmcdp2g3syrlld1pm7101cbzxh02cpvqvgsj7mp6zxm2k5plv"; depends=[]; }; Rcsdp = derive2 { name="Rcsdp"; version="0.1.57.5"; sha256="1lhw7czra10bw8r7cv472wyx58gd4qhs6hsyijsgkfcb9b5qn12h"; depends=[]; }; Rcssplot = derive2 { name="Rcssplot"; version="1.0.0"; sha256="0hnzwjwk9zh4zbzy8sa0z6amikvpd9k1p1abd38khr8q8k1k8jiv"; depends=[]; }; - Rcurvep = derive2 { name="Rcurvep"; version="1.2.1"; sha256="1kad4zc0b95gd1h8kxdmqx74mmadcwzpl2vbrsqr620x2zg4lw4y"; depends=[boot dplyr ggplot2 magrittr purrr Rdpack rlang stringr tibble tidyr tidyselect]; }; + Rcurvep = derive2 { name="Rcurvep"; version="1.3.1"; sha256="1l29z50ka9n2qma1pk8gw00xhxvzxkrd07dwrd8k5b36kiql2q3y"; depends=[boot dplyr furrr ggplot2 magrittr purrr Rdpack rJava rlang stringr tibble tidyr tidyselect]; }; Rd2md = derive2 { name="Rd2md"; version="0.0.5"; sha256="1kqni87jg3avpcir1ls2kkf6qafkkdkcv51d9azsbqmji5168vlf"; depends=[knitr]; }; Rd2roxygen = derive2 { name="Rd2roxygen"; version="1.14"; sha256="1d45dn1vxx5vq53m8as4fyq7077s1vw9xxq5r7f4fajybpqiby18"; depends=[formatR roxygen2 xfun]; }; Rdiagnosislist = derive2 { name="Rdiagnosislist"; version="1.2"; sha256="0jnjqwqvaj6brgpmd9xj04ax5dbwqpbb89hhn1m2bd3v9673k1v3"; depends=[bit64 data_table]; }; Rdice = derive2 { name="Rdice"; version="1.0.0"; sha256="1xibvm690808p2g3jch7rh1825yrpgln2hjfclgxjwn822qvs4xr"; depends=[data_table]; }; Rdimtools = derive2 { name="Rdimtools"; version="1.1.2"; sha256="0bl8ffyy9jb6xp1jb350fj5pw3zvc1dnrdhl4vi25kl84pp30xl6"; depends=[ADMM CVXR maotai MASS mclustcomp RANN Rcpp RcppArmadillo RcppDE RcppDist Rdpack RSpectra]; }; Rdistance = derive2 { name="Rdistance"; version="3.0.0"; sha256="07814154yss9660js65ib5jjgyhvyawxx6af1zl1im14ynrmz0np"; depends=[crayon units]; }; - Rdpack = derive2 { name="Rdpack"; version="2.5"; sha256="0xy8w3law1dn53f1gv4jd637pwssr928pvgchpbrpsqz8ghv4kad"; depends=[rbibutils]; }; + Rdpack = derive2 { name="Rdpack"; version="2.6"; sha256="02i21i85pb5aim529byjwhmyyz9jd82mi4j26a3kay0pcn6djxba"; depends=[rbibutils]; }; Rdrw = derive2 { name="Rdrw"; version="1.0.2"; sha256="1487r8z6h1y0v6fxkp7qfbh7j96hw8gqbb0fc90m4cxwz0hrqrn2"; depends=[mvtnorm]; }; Rdsdp = derive2 { name="Rdsdp"; version="1.0.5.2.1"; sha256="0lm5c1cv6jyxkmr09khfnsab4bzjbfcg8j04zc4zqimy1541i6yn"; depends=[]; }; Rdta = derive2 { name="Rdta"; version="1.0.0"; sha256="1zmyh61wrzqwyfjbfcxg41cri7hy9r0jfwnixcvd086y0vxq7fdn"; depends=[MCMCpack mvtnorm Rdpack]; }; @@ -4571,7 +4655,7 @@ in with self; { ReAD = derive2 { name="ReAD"; version="1.0.1"; sha256="0wn8ka8mjx216py26h1fcswgv061wrcdfzdj55sryvykfxaggiir"; depends=[qvalue Rcpp RcppArmadillo]; }; ReDaMoR = derive2 { name="ReDaMoR"; version="0.7.2"; sha256="1p63kmf7442i0iw4f6hj6h6vs4kqgz6v9wj88vp63nb1w9r8l9av"; depends=[colourpicker crayon dplyr DT jsonlite magrittr markdown Matrix readr rintrojs rstudioapi shiny shinyjs visNetwork]; }; ReDirection = derive2 { name="ReDirection"; version="1.0.1"; sha256="0hcl09drgr93yjssw2mpdpvr084ifzylsi6140hafjpm9f9pmvkm"; depends=[gtools MASS pracma]; }; - ReIns = derive2 { name="ReIns"; version="1.0.13"; sha256="1fdz80wbvmhh1vs796cz69wza0cpj5xv08hn5prygnl5vgp7d737"; depends=[doParallel foreach Rcpp survival]; }; + ReIns = derive2 { name="ReIns"; version="1.0.14"; sha256="1qqgphlc7wl541nx7qrkbc66414gy0l2pi164h03ndw0s7x7k4g7"; depends=[doParallel foreach Rcpp survival]; }; ReMFPCA = derive2 { name="ReMFPCA"; version="1.0.0"; sha256="0q7jzya5is4ik8cjirnhixcpgda5s9a450pyksyzc05fmn7rw3rc"; depends=[expm fda Matrix R6]; }; ReacTran = derive2 { name="ReacTran"; version="1.4.3.1"; sha256="05c9jfvj134gy3by7m3r1fbar0m39vaydr7d2py9cakzs44fqfpj"; depends=[deSolve rootSolve shape]; }; ReadDIM = derive2 { name="ReadDIM"; version="0.2.11"; sha256="1dyf1hrqcjqramb957kj7ngd65439p7ywa0r2rdlyn4bg89myi7c"; depends=[raster stringr]; }; @@ -4619,25 +4703,25 @@ in with self; { RestRserve = derive2 { name="RestRserve"; version="1.2.1"; sha256="1xfcp0y9l31815g1jk33mnkb6z68qpjl0gb4fj7f4578kx3v1c8p"; depends=[checkmate digest jsonlite mime R6 Rcpp Rserve uuid]; }; RestoreNet = derive2 { name="RestoreNet"; version="1.0"; sha256="015j8kw0msixjxljhpj4hnj67k9z89zcsyga0jva4ig5ri24rj34"; depends=[ggplot2 Matrix RColorBrewer scales scatterpie stringr xtable]; }; RevEcoR = derive2 { name="RevEcoR"; version="0.99.3"; sha256="1nym263ynjdir5kxv35jnmki9mshlplq0sk3xnjd4ac6f1cfbfqj"; depends=[gtools igraph magrittr Matrix plyr purrr stringr XML]; }; - RevGadgets = derive2 { name="RevGadgets"; version="1.1.1"; sha256="0vs6wcapckyy2i2g1699sha963gwfy68swvd2xxphxnlsa8hfr3f"; depends=[ape deeptime dplyr ggimage gginnards ggplot2 ggplotify ggpp ggthemes ggtree phytools png reshape scales tibble tidyr tidytree treeio]; }; + RevGadgets = derive2 { name="RevGadgets"; version="1.2.1"; sha256="02f4wrm6b99s7dwqn5xlsynlfh5clpcgv6dh4d35xj7x71l2h7cv"; depends=[ape deeptime dplyr ggimage gginnards ggplot2 ggplotify ggpp ggtree phytools png reshape scales tibble tidyr tidytree treeio]; }; ReviewR = derive2 { name="ReviewR"; version="2.3.10"; sha256="1h5vgqxvx5cjcwgrj7ayc7b1xzkgyndif46pjfmaz4pw1sz8990h"; depends=[bigrquery config DBI dbplyr dplyr DT gargle glue golem httr jsonlite magrittr purrr redcapAPI REDCapR rlang RPostgres RSQLite shiny shinycssloaders shinydashboard shinydashboardPlus shinyjs shinyWidgets snakecase stringr tibble tidyr]; }; Revticulate = derive2 { name="Revticulate"; version="1.0.0"; sha256="00pz8nnbl7dcbbqw8kdbdai1i3jc941l42nppaa1kxk6i3dci7gs"; depends=[ape comprehenr jsonlite knitr rstudioapi stringr usethis]; }; Rexperigen = derive2 { name="Rexperigen"; version="0.2.1"; sha256="158ksnd1gvzq7ii0ys2v0wrfnr001hni0i8m77p1fn1arixgmqdw"; depends=[digest jsonlite RCurl]; }; RfEmpImp = derive2 { name="RfEmpImp"; version="2.1.8"; sha256="1azcjwf9l4c3ssp565qkvpqx3n28vfdwgcy53z61psgc1nlxnk19"; depends=[mice ranger]; }; Rfacebook = derive2 { name="Rfacebook"; version="0.6.15"; sha256="0hp2mbm0hnyasizszvh5x9hv7z2q633zck1a1gvk36nbxb1shx7c"; depends=[httpuv httr rjson]; }; - Rfast = derive2 { name="Rfast"; version="2.0.8"; sha256="1c64j8hg6id4ri3m32aa1r0qyn09kl3dvl865dzf43qdb3qcichv"; depends=[Rcpp RcppArmadillo RcppZiggurat]; }; + Rfast = derive2 { name="Rfast"; version="2.1.0"; sha256="1zqq4k85i0nbzndkh0iiq3k83ly0mpl3pn4wkka6qxfvk6n6rr7r"; depends=[Rcpp RcppArmadillo RcppParallel RcppZiggurat]; }; Rfast2 = derive2 { name="Rfast2"; version="0.1.5.1"; sha256="1cj0ggb49l2srycl8k832kvfx5y43yvhknn0glkkgcac838y2417"; depends=[RANN Rcpp RcppArmadillo RcppParallel Rfast]; }; Rfit = derive2 { name="Rfit"; version="0.24.6"; sha256="0b4gdy54zbbc8zr0krv34ggxnqncgj2hxzqjfg6j21apn7qsv8r2"; depends=[]; }; Rfolding = derive2 { name="Rfolding"; version="1.0"; sha256="15lf73zxr1slin9faj9k0z8qkb1g9nb7h080nfv99gsi2ks68ssg"; depends=[]; }; Rforestry = derive2 { name="Rforestry"; version="0.10.0"; sha256="1h5bnaakpig7b2041s43kfljywdbdq6kkvv3agld2953nn8kcbw3"; depends=[glmnet onehot pROC Rcpp RcppArmadillo RcppThread visNetwork]; }; Rfractran = derive2 { name="Rfractran"; version="1.0.1"; sha256="1z1wba2xyas2sa9ny0ii8yd5v5ip8ajxf5szgf3r92cfv3r1s0nj"; depends=[gmp]; }; - Rfssa = derive2 { name="Rfssa"; version="3.0.1"; sha256="0nxn0lq28vl0bnr1cmbr3pgivmxs0a23wh2bg4z2knvzw00lg2nn"; depends=[dplyr fda ftsa ggplot2 lattice markdown plotly rainbow Rcpp RcppArmadillo RcppEigen RSpectra Rssa shiny tibble]; }; + Rfssa = derive2 { name="Rfssa"; version="3.0.2"; sha256="1fa9j7rcsf5pz8l4h88l9mz4qf8vlrzg53c99176wmj5a39n2abp"; depends=[dplyr fda ftsa ggplot2 lattice markdown plotly rainbow Rcpp RcppArmadillo RcppEigen RSpectra Rssa shiny tibble]; }; Rgb = derive2 { name="Rgb"; version="1.7.5"; sha256="1hj7hxvj785qg4j52bvwgczv21fhz2fjncvxn2fahsb4hdkrvfrm"; depends=[]; }; Rgbp = derive2 { name="Rgbp"; version="1.1.4"; sha256="1y51sms321sbrl3rgzp5hq4y5mqkrjxsyrq75gkcbwfvlakjcfrg"; depends=[mnormt sn]; }; Rgff = derive2 { name="Rgff"; version="0.1.6"; sha256="1prcjnr4zvp8ksrnzrvz7zmwbsximhg3aifa1wsz6h9aa3pcl2gl"; depends=[data_tree dplyr magrittr RJSONIO rlang stringi tibble tidyr withr]; }; Rglpk = derive2 { name="Rglpk"; version="0.6-5"; sha256="18bwnpb8645vf233andr411shzp1sm3i7bn848sgxswgb80grvxa"; depends=[slam]; }; - Rgof = derive2 { name="Rgof"; version="1.2.1"; sha256="0n2ddwhx0qibczx8im39gjdmh8alng5w6f7hbvvx3p7sm6xxp0q7"; depends=[ggplot2 Rcpp]; }; - RgoogleMaps = derive2 { name="RgoogleMaps"; version="1.4.5.3"; sha256="02v8k0bw70q4qwx4lcdy8p25q7n3ql2ll46lfpqllxa1p26svmfi"; depends=[png sp]; }; + Rgof = derive2 { name="Rgof"; version="1.2.2"; sha256="0csya8lkjj3w1pwr6g0avs17na07rfnfpx5z9s01vcql92v8aii0"; depends=[ggplot2 Rcpp]; }; + RgoogleMaps = derive2 { name="RgoogleMaps"; version="1.5.1"; sha256="197q5i2sky824dwq0x4hhrpkrsd1b6f9qg06mjlwb89mv4vnrzhl"; depends=[png]; }; RhpcBLASctl = derive2 { name="RhpcBLASctl"; version="0.23-42"; sha256="05b6jhmxdr1rdpbvf5gwi9dqb57m8z2860qzkw5hcr72d5drv22w"; depends=[]; }; Ricrt = derive2 { name="Ricrt"; version="0.1.0"; sha256="12fj6q5disl5vmpcwfvf64zqxjw2srrvbvpy10gy81k5lidzznqc"; depends=[dplyr glmnet randomForest Rdpack rlang SuperLearner tidyverse]; }; RiemBase = derive2 { name="RiemBase"; version="0.2.5"; sha256="1ikv7n8hp23a5dbmnfypdkx74vxwjd9br0hvysnhhpg1ffvr5vhi"; depends=[pracma Rcpp RcppArmadillo Rdpack]; }; @@ -4651,11 +4735,12 @@ in with self; { RiskScorescvd = derive2 { name="RiskScorescvd"; version="0.1.0"; sha256="1lh0ag5k72msvj2pg3v2ajvwysjd638hxbifqklvsv5qjv7hzwfy"; depends=[dplyr PooledCohort]; }; Rita = derive2 { name="Rita"; version="1.2.0"; sha256="0qc969pjs7bn8c7alisqb2pvba22kkvd3lsfqz5wnrpy311s4jxr"; depends=[lattice]; }; Ritc = derive2 { name="Ritc"; version="1.0.2"; sha256="03smhxjhjfkc9pxhlgg54b6v2jznpmnws8373qpvn9a9ky5bcq2l"; depends=[minpack_lm]; }; + RivRetrieve = derive2 { name="RivRetrieve"; version="0.1.3"; sha256="12h7d5xgwsh4798khh6sa9a6ysqxpwy6ygymwdls4pg45g3c6621"; depends=[BBmisc dataRetrieval devtools dplyr httr jsonlite lubridate readr rlang rlist RSelenium rvest stringr tibble tidyhydat tidyr]; }; RiverBuilder = derive2 { name="RiverBuilder"; version="0.1.1"; sha256="06cd1m4liv2bsh2sxplq2zl45g9zq8gsgvh14d0zr0pqm8z4dsyw"; depends=[]; }; Rivivc = derive2 { name="Rivivc"; version="0.9.1"; sha256="0vbnkid5cp9af0m2kk3cblb3fr69llzmk6ckjy1brgyvrrmw5hz3"; depends=[signal]; }; RkMetrics = derive2 { name="RkMetrics"; version="1.3"; sha256="1k6vnr1r4h69iznib638z45gd0f8wc4g4h0ji9f0017883g77li1"; depends=[]; }; Rlab = derive2 { name="Rlab"; version="4.0"; sha256="019rmciqza5rd5z9hvh8xk20c2rjhzyzp1k5731qm1d3jz5lwx5k"; depends=[]; }; - Rlabkey = derive2 { name="Rlabkey"; version="2.12.0"; sha256="0rzm81q22brxzvqdany7xjs4782my2pbmdlp7bayn4ls2frwvv46"; depends=[httr jsonlite Rcpp]; }; + Rlabkey = derive2 { name="Rlabkey"; version="3.2.0"; sha256="0knnfz9pp4licn0j771f9fyh1y689qw0yvjdfdnr6fii71x0in6l"; depends=[httr jsonlite Rcpp]; }; Rlgt = derive2 { name="Rlgt"; version="0.2-1"; sha256="0hrqishf056d8nivm2rya2xxpdzmn69ajnxdp9w39fhdfjhzv90p"; depends=[BH forecast Rcpp RcppEigen RcppParallel rstan rstantools sn StanHeaders truncnorm]; }; Rlibeemd = derive2 { name="Rlibeemd"; version="1.4.3"; sha256="1r3yqs9pc1mllwvw8asppr59kxvmw8dd15wbvn57ngij7kq6aj1l"; depends=[Rcpp]; }; Rlibkdv = derive2 { name="Rlibkdv"; version="1.1"; sha256="1lcmnc50bfnrnw03bs3lsxdsj2n3qylfw51w6kvnz9x1qmr9p54p"; depends=[leaflet magrittr raster Rcpp sf]; }; @@ -4664,16 +4749,18 @@ in with self; { Rlof = derive2 { name="Rlof"; version="1.1.3"; sha256="068898i310ylddpndh0dsiaiimmdk8pc1rbvh4a8ikihwbc9hk55"; depends=[doParallel foreach]; }; Rmalschains = derive2 { name="Rmalschains"; version="0.2-10"; sha256="15z2jz5zv3cw18kgvpm11g2i5p397h4a34j08wbkgmnjca76sgmd"; depends=[Rcpp]; }; RmarineHeatWaves = derive2 { name="RmarineHeatWaves"; version="0.17.0"; sha256="09lrrxnkkfnbidnmag1czx2xzssdl09348nkc6pqgq6xz36a3mqc"; depends=[dplyr ggplot2 lazyeval lubridate plyr raster rlang tibble tidyr zoo]; }; - RmdConcord = derive2 { name="RmdConcord"; version="0.2.0"; sha256="08yd6g2yawxr4k5awgrvnm720w5jsq9g5q9xqlvdr9pvmv8xnv4c"; depends=[knitr rmarkdown]; }; + RmdConcord = derive2 { name="RmdConcord"; version="0.3"; sha256="0fh1pzpbqsqkh6d6s7d4294nb4kmj71brr145fgil3a8hhbzsmp8"; depends=[knitr rmarkdown]; }; RmecabKo = derive2 { name="RmecabKo"; version="0.1.6.2"; sha256="1i08wlfd14wmvwrsvjyhgzxkwzfp4jiwbzymw8m25pvyjxgi7jmy"; depends=[Rcpp stringr]; }; Rmisc = derive2 { name="Rmisc"; version="1.5.1"; sha256="1h6jb0xwkyhm9lwm7nj9bhrb5dhrsifvkpqkrd594j1lz74dar8x"; depends=[lattice plyr]; }; - Rmixmod = derive2 { name="Rmixmod"; version="2.1.9"; sha256="0lwll21gkp90m0a06ldwgwr9v0df3k8v78s12510xkhiwqfynznq"; depends=[Rcpp RcppEigen]; }; + Rmixmod = derive2 { name="Rmixmod"; version="2.1.10"; sha256="12gi18zkbzi4qb4qk12dbwm1skcyjaydp1g8nm2bfsj5db1r5mcn"; depends=[Rcpp RcppEigen]; }; Rmodule = derive2 { name="Rmodule"; version="1.0"; sha256="0vbxazms3qmkhc40fb3hbyk84vrv31pmxl756wnm40z3p7l43kzk"; depends=[Matrix Rcpp RcppArmadillo]; }; Rmolt = derive2 { name="Rmolt"; version="1.0.0"; sha256="0fmis81h4c16wpwx6g60szf9d1gyvi60md2gn2mqln9gcf7w0icy"; depends=[]; }; + Rmonize = derive2 { name="Rmonize"; version="1.0.1"; sha256="1xyk56lh6w1yiy33sga1shnf3q8zfl3qz4zycf13sddjgzkwmzby"; depends=[crayon dplyr fabR fs haven madshapR rlang stringr tidyr]; }; Rmosek = derive2 { name="Rmosek"; version="1.3.5"; sha256="18q39n2p3gms9zqrl8g15rjjk4v64365v0rm8r7zvvivh1hy5xa0"; depends=[]; }; - Rmpfr = derive2 { name="Rmpfr"; version="0.9-3"; sha256="0hgn1ib581s0q5slscakhy858yrqlx8w5gnrn2zgga98iv4vv3c2"; depends=[gmp]; }; - Rmpi = derive2 { name="Rmpi"; version="0.7-1"; sha256="1h9dvlh9mvbc4lhxbv9c8yak3yrq4p7xym92pk5al5wkx9yy5nhp"; depends=[]; }; + Rmpfr = derive2 { name="Rmpfr"; version="0.9-4"; sha256="1fx8l42bbipzlaaljp7iwdkgbmb0rcw07vh4py8fycb3dvs9iiyf"; depends=[gmp]; }; + Rmpi = derive2 { name="Rmpi"; version="0.7-2"; sha256="1vrf6bakx9i73sdgggpxzl1lxjn68b8pwvmk69d56lnya2gzm4c5"; depends=[]; }; Rmst = derive2 { name="Rmst"; version="0.0.3"; sha256="1fykpii17k460qlsjhhh5vag02lhkyk5l3zjmg8hifqp0cjhz2fl"; depends=[ggplot2 Rata reshape2 Rirt]; }; + Rnanoflann = derive2 { name="Rnanoflann"; version="0.0.2"; sha256="1h978qaag2ylcdaxm70lzqcix3wlba64vfccws9nvm3d0ymdj7jl"; depends=[Rcpp RcppArmadillo]; }; RnavGraphImageData = derive2 { name="RnavGraphImageData"; version="0.0.4"; sha256="1k1gnkghap878fck0bbz9mm0fr4cli6lh1d11r0cf47fvl6cc4gr"; depends=[]; }; Rnightly = derive2 { name="Rnightly"; version="0.1.0"; sha256="08sb4ic7my8b6xcjn9vim8wp4z3kvk0gyp604dg1az7czc7ics5r"; depends=[glue htmltools]; }; Rnmr1D = derive2 { name="Rnmr1D"; version="1.3.2"; sha256="0apkwrsxcp2frq9lmfn70dn2ajaiswnbvfjmqc7lbrimya3pwznb"; depends=[base64enc doParallel foreach ggplot2 igraph impute MASS MassSpecWavelet Matrix minqa plotly plyr ptw Rcpp scales signal XML]; }; @@ -4692,7 +4779,7 @@ in with self; { RobMixReg = derive2 { name="RobMixReg"; version="1.1.0"; sha256="13w6zvncwh561wzzqy548x0w25rnzf0pfvi5cc6mzn71x5l7cmh2"; depends=[dplyr flexmix glmnet gplots gtools lars MASS RColorBrewer rlang robust robustbase scales]; }; RobPer = derive2 { name="RobPer"; version="1.2.3"; sha256="0zhn7lwh3lb9na9h59air2idc3nibjdw2mfgg9qa5h27p9amm1l7"; depends=[BB quantreg rgenoud robustbase]; }; RobRex = derive2 { name="RobRex"; version="1.2.0"; sha256="1npgbdvdzb0p0w77fsngrwg968y621p3lx8qw69ns8qgxjkismqp"; depends=[distr RandVar RobAStBase ROptRegTS]; }; - RobStatTM = derive2 { name="RobStatTM"; version="1.0.7"; sha256="07kman12jc5qvxsamrfy46b5qq80r7jf6c5anw8nvji41viqwlm1"; depends=[pyinit robustbase rrcov]; }; + RobStatTM = derive2 { name="RobStatTM"; version="1.0.8"; sha256="1qbbh3ykba50ivka1h7b2cyw2km0dk3gl1rgjwaq5rqlmfdwl0nn"; depends=[pyinit robustbase rrcov]; }; RobinHood = derive2 { name="RobinHood"; version="1.7.0"; sha256="0h8mws0wpyxvnjffrili53daz9bvvgm6lbgwqyzc0kd12radj2d0"; depends=[dplyr httr jsonlite lubridate magrittr profvis uuid]; }; RobustAFT = derive2 { name="RobustAFT"; version="1.4-7"; sha256="1i000j6d4s0yb99dxyq610a1znkiai9xc9l16wdb7lmnrhixz5qp"; depends=[DEoptimR robustbase survival]; }; RobustANOVA = derive2 { name="RobustANOVA"; version="0.3.0"; sha256="1kpvahxipcmsqk6mv2zagcvw0glmsj0xkpf6f3gjnckin6mxnjyv"; depends=[optimbase PEIP]; }; @@ -4705,7 +4792,7 @@ in with self; { RobustRankAggreg = derive2 { name="RobustRankAggreg"; version="1.2.1"; sha256="0p2nbgxv2132gcyx7zq2gzl6ipsxndx64i7y8v9nh5awcdy8v44p"; depends=[]; }; Robyn = derive2 { name="Robyn"; version="3.10.3"; sha256="1nsicscgdp85mhvwb3i6liqhvkszj5x3z6rhm6v3vq7mfxwfn7rf"; depends=[doParallel doRNG dplyr foreach ggplot2 ggridges glmnet jsonlite lares lubridate minpack_lm nloptr patchwork prophet reticulate stringr tidyr]; }; RockFab = derive2 { name="RockFab"; version="1.2.1"; sha256="0w1xvx5andm8mq3wfqgry8nbjvz4przz3bk771xz89bq60ws0q57"; depends=[EBImage rgl]; }; - Rogue = derive2 { name="Rogue"; version="2.1.5"; sha256="0qvzpdxszbgkjvbrslizjnysbps9skn22ihvk79mvhi8kshw3pz8"; depends=[ape cli fastmatch matrixStats Rdpack Rfast TreeDist TreeTools]; }; + Rogue = derive2 { name="Rogue"; version="2.1.6"; sha256="0wbgl9dj2lr5ffn27q6q06n45vj9lm9qxx07dvd37jniqjxz71v4"; depends=[ape cli fastmatch matrixStats Rdpack Rfast TreeDist TreeTools]; }; RolWinMulCor = derive2 { name="RolWinMulCor"; version="1.2.0"; sha256="0vfsgp0qvv6pnpai8nyy0xzzlzyjwx98xrhlwlks9dbm84wg8vqr"; depends=[colorspace gtools pracma scales zoo]; }; RolWinWavCor = derive2 { name="RolWinWavCor"; version="0.4.0"; sha256="1vfxx3n0nxh2yy8gglpbkzv2ih1gxj4cangnagdrcn93qxl7a3ym"; depends=[waveslim]; }; RonFHIR = derive2 { name="RonFHIR"; version="0.4.0"; sha256="1ajpgpp300m0zzqzzwsn8sfy8x751hrr8py9n9xvzjmkgyrh4hhw"; depends=[httr jsonlite R6 stringr]; }; @@ -4725,16 +4812,16 @@ in with self; { Rpoppler = derive2 { name="Rpoppler"; version="0.1-2"; sha256="11m3vw1an91567nf72vz2cbm520vbh6h4dmfzbrxbw24qy3y58x3"; depends=[]; }; RprobitB = derive2 { name="RprobitB"; version="1.1.2"; sha256="1acxgxv4v7id7smrg9f8dfxx9y17pvqwsbfg0n8zdd99q724bpx5"; depends=[cli crayon doSNOW foreach ggplot2 gridExtra MASS mixtools mvtnorm plotROC progress Rcpp RcppArmadillo rlang viridis]; }; Rprofet = derive2 { name="Rprofet"; version="2.2.1"; sha256="150123vxdd31p96f3vsri46ryfng2xvnjgm6mdiqczg48xyfpbdp"; depends=[binr ClustOfVar ggplot2 gridExtra plyr sqldf stringr]; }; - Rquefts = derive2 { name="Rquefts"; version="1.2-1"; sha256="1v548wys8fd6xqz4hfvqkckl6szjf6zr383n1x0kc6f2pfrc6jnf"; depends=[meteor Rcpp]; }; + Rquefts = derive2 { name="Rquefts"; version="1.2-3"; sha256="14p9g0bqkaslr3164a58crhj024xphp9ig24mvs2ad8vxvf1gsf0"; depends=[meteor Rcpp]; }; Rramas = derive2 { name="Rramas"; version="0.1-6"; sha256="16aapvz9j81lvi5ryj41bvn3wf51b0gynnzs0jpvva4m3mvzw6an"; depends=[diagram]; }; Rraven = derive2 { name="Rraven"; version="1.0.13"; sha256="0nlqr1hzbzbz4rb3hjy01iw8czhaqvwmy9hh728fgl5vajwqwn8g"; depends=[NatureSounds pbapply seewave tuneR warbleR]; }; Rrdap = derive2 { name="Rrdap"; version="1.0.6"; sha256="0lwp80622xnjgfljds0fs64l3c30ijmz495v48j564za4ss4yx9q"; depends=[curl rjson stringr]; }; - Rrepest = derive2 { name="Rrepest"; version="1.0.0.8"; sha256="0w7nhdcdzrih55jlz7066fm03rp17w5dig804l75dpflan9wspin"; depends=[data_table doParallel dplyr flextable foreach labelled magrittr officer purrr stringr tibble tidyr]; }; + Rrepest = derive2 { name="Rrepest"; version="1.3.0"; sha256="0j2siwnpp8isgb82qq9s1khjgnhgfygm8487grflw8qniz22cq5f"; depends=[data_table doParallel dplyr flextable foreach labelled magrittr officer purrr stringr tibble tidyr]; }; RsSimulx = derive2 { name="RsSimulx"; version="2023.1"; sha256="0j48d94r68lzjpkak67q455q09ivp9fnkcsbqh8qziikzglf2ac5"; depends=[ggplot2 gridExtra]; }; Rsagacmd = derive2 { name="Rsagacmd"; version="0.4.2"; sha256="08xj6dinqnr9ir0ljz0ybyh3wqsbw5hdp27xfvcmc8vi48gf4rlj"; depends=[foreign generics processx rlang rvest sf stars stringr terra tibble]; }; Rsampling = derive2 { name="Rsampling"; version="0.1.1"; sha256="14rp3j7iaii4rc3jkbijmbgvlagxxqjkz3vvfwwpxix43rsi8zsk"; depends=[]; }; Rsconctdply = derive2 { name="Rsconctdply"; version="0.1.3"; sha256="12xc1laxgivv4szp8341pvhmxnzzzzc2s4jhnqsqrbx71lbd9szg"; depends=[dplyr rjson rsconnect]; }; - Rserve = derive2 { name="Rserve"; version="1.8-11"; sha256="118vmylh14avsq4ckx0933hk8j200jkbz88j5rfyx31z95l1vywx"; depends=[]; }; + Rserve = derive2 { name="Rserve"; version="1.8-13"; sha256="0k4ssrcz28xi6sq37z3xz511jmi925q9wz8fyr3dfac0r8pk2pby"; depends=[]; }; Rsfar = derive2 { name="Rsfar"; version="0.0.1"; sha256="1xskvvvavkdyjhb99qlii9qc0q1m36mxx6g0ybgwbq26lq4ypq7l"; depends=[fda]; }; Rsgf = derive2 { name="Rsgf"; version="1.0.0"; sha256="1d2bk20ixnfkzbimvsj56arf7brgkwlyrs80snfn5cnvmwic0h8i"; depends=[ggplot2 png stringi stringr]; }; RsimMosaic = derive2 { name="RsimMosaic"; version="1.0.3"; sha256="0jlzrs9xxlpazvq3iw8znk0bd00bzlry7bgxsxq7xl23akizj0ji"; depends=[fields jpeg RANN]; }; @@ -4743,6 +4830,7 @@ in with self; { Rsomoclu = derive2 { name="Rsomoclu"; version="1.7.6"; sha256="1jbi4nib0a749k7vkqzhdb5l2jipxq9k8vi5x7i06qns8sb3ajil"; depends=[kohonen Rcpp]; }; Rspc = derive2 { name="Rspc"; version="1.2.2"; sha256="1cnzqpnh009wfs51dc4id9q3giaa8b6dc75b1lhzpwcvw0cxcy4y"; depends=[]; }; Rspotify = derive2 { name="Rspotify"; version="0.1.2"; sha256="1q8ajjx5ghlgxgch9gifvhi2gmsi0ph8pygwrb9jrd3ijahlw5k4"; depends=[dplyr httr jsonlite magrittr plyr]; }; + RsqMed = derive2 { name="RsqMed"; version="1.1"; sha256="10iszj6mgpvrg1lqm4k0bk27vz0jcdkaswm4wjjq8zffra34czkj"; depends=[GMMAT SIS]; }; Rssa = derive2 { name="Rssa"; version="1.0.5"; sha256="0bajpvrj7cfch7v83dl2swa62kd59xk0lavjcx20lczvd9iijn27"; depends=[forecast lattice svd]; }; Rstg = derive2 { name="Rstg"; version="0.0.1"; sha256="1rghac9sjld03rw1sbq2r7rs2fzf3a2xikjb47cfdnk1r73ziysf"; depends=[reticulate]; }; Rsurrogate = derive2 { name="Rsurrogate"; version="3.1"; sha256="1l80xl7q6w97m80wj2639rhbqvxyl87r9lisk8cjf2bvcmf0spmb"; depends=[Matrix survival]; }; @@ -4751,16 +4839,15 @@ in with self; { Rtauchen = derive2 { name="Rtauchen"; version="1.0"; sha256="09282k6qsjxgm26682npfjymmbx5g8flcc44awmkjl2k4fa1q9ha"; depends=[]; }; Rthingsboard = derive2 { name="Rthingsboard"; version="0.2.7"; sha256="165yx215vmsx3r5zqzh0awf5jzznxsapq49c3q5qrhcircbnjfcg"; depends=[dplyr httr logger]; }; Rtnmin = derive2 { name="Rtnmin"; version="2016-7.7"; sha256="0f8ii87v29v61b93hx2yxdppp3nvgnl5imp80sbb4bjsdg0mf989"; depends=[]; }; - Rtrack = derive2 { name="Rtrack"; version="2.0.2"; sha256="0npshk2ajmzyp11rgjqy1jr3pw3lm2n384zhsimphldvwhi98v6c"; depends=[crayon Hmisc KernSmooth openxlsx pbapply randomForest RCurl readxl rjson scales stringi terra zip]; }; + Rtrack = derive2 { name="Rtrack"; version="2.0.3"; sha256="0aq4487vj0c9hcq1vgqcyjr3pzyjx4w008x8lrhimjvsqxd5vngd"; depends=[crayon Hmisc KernSmooth openxlsx pbapply randomForest RCurl readxl rjson scales stringi terra zip]; }; Rtropical = derive2 { name="Rtropical"; version="1.2.1"; sha256="1r4585z1fna9s8whaq1w0drndg9cpqmrmqylj3m2ahfppb0xr3ic"; depends=[ape caret lpSolve lpSolveAPI RcppAlgos Rfast]; }; - Rtsne = derive2 { name="Rtsne"; version="0.16"; sha256="1mgviwrqwapn8w7rq0sjxca5vi7ylgmm876ijwp22a3chbf5m82j"; depends=[Rcpp]; }; + Rtsne = derive2 { name="Rtsne"; version="0.17"; sha256="02srqmfkdj7v9gyhssaqdarg4ljn2ds77w25a5w0dm66sqa6ibis"; depends=[Rcpp]; }; Rttf2pt1 = derive2 { name="Rttf2pt1"; version="1.3.12"; sha256="10x580dnzddm9z045gya5ya01d10s9mpp0fy8ilrldlh74q7ljqb"; depends=[]; }; Rtumblr = derive2 { name="Rtumblr"; version="0.1.0"; sha256="19vl079icyh615ac8wxw810dfqlj3c1lpr0gjkkc030jpl2g0yzr"; depends=[dplyr httr tibble]; }; Rtwalk = derive2 { name="Rtwalk"; version="1.8.0"; sha256="0zxf66lsfq8by40flv34xzd5yy0wa1ah9li1d0h7f0yh9nbwhxl5"; depends=[]; }; Runuran = derive2 { name="Runuran"; version="0.38"; sha256="1fjr9pbjih6ahbsd557p3d5j8klj11wnnn7jkhjcry1spwlzdkhr"; depends=[]; }; - Rvcg = derive2 { name="Rvcg"; version="0.22.1"; sha256="16rr2kqw7lqb7m01pwn496zf2nr25gm6wcncz44kszjzzmv2xanv"; depends=[Rcpp RcppArmadillo RcppEigen]; }; + Rvcg = derive2 { name="Rvcg"; version="0.22.2"; sha256="077p4c16nqi6ayxv1i31cr6sw9fwnxpmfkmrrhzh02khpi2c2jg5"; depends=[Rcpp RcppArmadillo RcppEigen]; }; Rveg = derive2 { name="Rveg"; version="0.1.3"; sha256="0r4q5iyfi9f95kzmhjgy1jdiv85wr16m5yhgq9zz36sjs4miif2m"; depends=[dplyr]; }; - Rvmmin = derive2 { name="Rvmmin"; version="2018-4.17.1"; sha256="0kl1h4mlvb1bngb40r3dhrjkpnh3lsqddis65hbjzm2pzz20l02m"; depends=[optextras]; }; Rwave = derive2 { name="Rwave"; version="2.6-5"; sha256="1r72kcc5f9k38ks39nh9x1y7k1kxrbyv7lywqpsy7wknnddzg7kc"; depends=[]; }; Rwclust = derive2 { name="Rwclust"; version="0.1.0"; sha256="0c7q2i9n22sqj3wq9m0j49y5h14848myjbixrdkic8lvv91dm438"; depends=[checkmate Matrix]; }; RweaveExtra = derive2 { name="RweaveExtra"; version="1.0-0"; sha256="1jg4dn2x8d74z0wy9j9azvb8f1g0449ji5yl6g964lv2g3fpq6qh"; depends=[]; }; @@ -4789,7 +4876,7 @@ in with self; { SAMTx = derive2 { name="SAMTx"; version="0.3.0"; sha256="18r03w74fcra3c0xa76jnkkms9pjirdmgb2k1dnz7symqf9cvc5l"; depends=[BART]; }; SAMUR = derive2 { name="SAMUR"; version="1.1"; sha256="1ihxr455hxpk3mz113j7ai36lw9i4v60yd4x50j7npzcpq5r0mwk"; depends=[Matching]; }; SAMprior = derive2 { name="SAMprior"; version="1.1.1"; sha256="1xp3wvgjp9252l8w42fsr61bh6ggs3b21df182rw3irh2ijn1mc0"; depends=[assertthat checkmate ggplot2 Metrics RBesT]; }; - SAMtool = derive2 { name="SAMtool"; version="1.6.1"; sha256="1higcy821apya9a1c73dqc7661knjp14cax9wm3023dz8n92z0dg"; depends=[abind dplyr gplots MSEtool pbapply RcppEigen rmarkdown snowfall TMB vars]; }; + SAMtool = derive2 { name="SAMtool"; version="1.6.3"; sha256="06sq9862098mwf2inamhjf3v9qf3w790sahmcsblvlik3mh9qs8f"; depends=[abind dplyr gplots MSEtool pbapply RcppEigen rmarkdown snowfall TMB vars]; }; SANple = derive2 { name="SANple"; version="0.1.0"; sha256="1ss9p8pw5k1rp8xap98bd587xfhr006xwbf85c1az3rc1p4rji77"; depends=[RColorBrewer Rcpp RcppArmadillo RcppProgress salso scales]; }; SANvi = derive2 { name="SANvi"; version="0.1.0"; sha256="1rcg5j8gvcz1wi2qzhsblb7ml8l6hiimyzpk2bkl6hicrgjrzi66"; depends=[matrixStats RColorBrewer Rcpp RcppArmadillo scales]; }; SAP = derive2 { name="SAP"; version="1.0"; sha256="129szqkh4snlqn5q09yaqf6sd04nvai3a0ifk0b36yrqj92v6fd1"; depends=[BSDA]; }; @@ -4817,7 +4904,7 @@ in with self; { SCBmeanfd = derive2 { name="SCBmeanfd"; version="1.2.2"; sha256="045498q71zqgcg8p3665vwd99a8ybf21y0sa7y8316zw66wb1caz"; depends=[boot KernSmooth]; }; SCCI = derive2 { name="SCCI"; version="1.2"; sha256="08ibazxiqmkm3n9g8bfp0cfq26zmg6x2fxb064g3z05nczsf72db"; depends=[Rcpp]; }; SCCS = derive2 { name="SCCS"; version="1.6"; sha256="03737abfpg4bpbmgxryls9vfhhmx3kw02kw36y3rd3pnn2mcfd4v"; depends=[corpcor fda gnm R_methodsS3 survival]; }; - SCDB = derive2 { name="SCDB"; version="0.2"; sha256="0c9pfs08np4igwl0p8z8v6m0yibvylj7mrzpgp34iaibfd5lqgnr"; depends=[checkmate DBI dbplyr dplyr glue lubridate openssl purrr R6 rlang RSQLite stringr tidyr tidyselect tidyverse]; }; + SCDB = derive2 { name="SCDB"; version="0.2.1"; sha256="00fa3j22xr6c7jyrrb6g0yh1szkcxqpsk4wsk4s77h8vky52xr6f"; depends=[checkmate DBI dbplyr dplyr glue lubridate openssl purrr R6 rlang RSQLite stringr tidyr tidyselect tidyverse]; }; SCEM = derive2 { name="SCEM"; version="1.1.0"; sha256="1fxxkv965gb0wq06rclv05xxlzk8p9l8hzbnqcf0nbbymyn73fqr"; depends=[devtools mathjaxr]; }; SCEPtER = derive2 { name="SCEPtER"; version="0.2-4"; sha256="1098pvq3a7k9czxapszkakc8lr9sfvj7a643iivil5fcqfk0j50r"; depends=[MASS]; }; SCEPtERbinary = derive2 { name="SCEPtERbinary"; version="0.1-1"; sha256="0rab0widfndx94dn1nchhs06q0d57vq2n3xy79p130l9rgp9v489"; depends=[MASS SCEPtER]; }; @@ -4843,7 +4930,7 @@ in with self; { SDCNway = derive2 { name="SDCNway"; version="1.0.1"; sha256="0zmjc3xh4qvwyrq4ma2k6q08f4ny4iqnl5a640pj17jk8awzwbg0"; depends=[dplyr ggplot2 MASS plyr Rdpack]; }; SDEFSR = derive2 { name="SDEFSR"; version="0.7.22"; sha256="10rxq2y7a9rbzgl5s5fdh93jm4w5kqbyyflw5xfsdwymjj9p4b7m"; depends=[foreign ggplot2 shiny]; }; SDGdetector = derive2 { name="SDGdetector"; version="2.7.3"; sha256="0gm23f0xqw2cgig44d17qw2mfp685bz0dr8wrly4r90w44l121z9"; depends=[dplyr ggplot2 magick magrittr rnaturalearth scales stringr tidyr]; }; - SDLfilter = derive2 { name="SDLfilter"; version="2.3.2"; sha256="197y4kvjn07c3jnx3ayr496h70r87r7f4c7r0swcdkj9ir93dz4g"; depends=[data_table dplyr emmeans geosphere ggmap ggplot2 gridExtra lubridate maps pracma sf stars]; }; + SDLfilter = derive2 { name="SDLfilter"; version="2.3.3"; sha256="0f565626kbi5rigsla5843rczmfi0hwmrwn2410smfhjvhywmlqy"; depends=[data_table dplyr emmeans geosphere ggmap ggplot2 ggspatial gridExtra lubridate maps pracma sf stars]; }; SDMPlay = derive2 { name="SDMPlay"; version="2.0"; sha256="1qdvpa57p4p3949rjmvvvz41a3hm3jb34dnn8s2pi04rzrjkys0f"; depends=[dismo raster]; }; SDMtune = derive2 { name="SDMtune"; version="1.3.1"; sha256="0zzra0vig3gyz3b0h66fdlkpl2ii939d7k6p7ym5mzhz1vqdaljz"; depends=[cli dismo gbm ggplot2 jsonlite maxnet nnet randomForest Rcpp rlang rstudioapi stringr terra whisker]; }; SDPDmod = derive2 { name="SDPDmod"; version="0.0.3"; sha256="1xasqx6alza9290a97an2dqnsab7x5av8nhv2zczi670443k2pcp"; depends=[Matrix plm RSpectra sf sp spdep]; }; @@ -4858,19 +4945,22 @@ in with self; { SECFISH = derive2 { name="SECFISH"; version="0.1.7"; sha256="0yd9k6anz9g4psg5kh1bhp0lr1i4y7in1m0mxk4qp14nl1zqy4fy"; depends=[ggplot2 Hmisc optimization]; }; SECP = derive2 { name="SECP"; version="0.1.5"; sha256="01nq30ap06n2inqb59qmv4wkc9wh1hdkyfblqs0inn55842d009z"; depends=[SPSL]; }; SEERaBomb = derive2 { name="SEERaBomb"; version="2019.2"; sha256="0rlah68jbaw4qbqq5rnlrm6m9ckz7igbsay6iq1yvk4gy24p9bfh"; depends=[DBI demography dplyr forcats ggplot2 labelled LaF mgcv openxlsx plyr purrr Rcpp readr reshape2 rgl RSQLite scales stringr survival tibble tidyr WriteXLS]; }; + SEI = derive2 { name="SEI"; version="0.1.0"; sha256="0wb2r98m8h2z0pa6d8k20bjdg4y4y6zg0b0ppqf8jfm9vn8m4fdc"; depends=[fitdistrplus ggplot2 xts zoo]; }; SEIRfansy = derive2 { name="SEIRfansy"; version="1.1.1"; sha256="0xnyrsv04n22s71v1wajwpccwk78q27fgry9dhxxzw8a6yd082x8"; depends=[arm DescTools dplyr ggplot2 ggpubr knitr magrittr patchwork pbapply rlang scales]; }; - SEL = derive2 { name="SEL"; version="1.0-3"; sha256="0nkr6m4aq4i0vq19v04lfkjmmjii1dfqsj1mfwagwsw6ain1jarr"; depends=[lattice quadprog]; }; + SEL = derive2 { name="SEL"; version="1.0-4"; sha256="1inahd5hajy3cmwas5zz1nlnzzrv7rraf3xb6n0vrk1fxm7s42wj"; depends=[lattice quadprog]; }; SELF = derive2 { name="SELF"; version="0.1.1"; sha256="1yafjhxwsanr33dqy7w9x61ghldr29s8k6h68idq6nnfb77ghjyx"; depends=[bnlearn CompareCausalNetworks data_table Rcpp xgboost]; }; SEMID = derive2 { name="SEMID"; version="0.4.1"; sha256="14x2vir17fp9wm9hzsrc1sw0qgavkpfdvcsfnnklhznl0h526xrr"; depends=[igraph R_methodsS3 R_oo R_utils]; }; SEMgraph = derive2 { name="SEMgraph"; version="1.2.0"; sha256="1v106i7wzaq0656wzngj1xhh9ivs3kc7kyj78f44x6fi3brs71ab"; depends=[boot corpcor dagitty flip gdata ggm glasso glmnet graph igraph lavaan mgcv pbapply protoclust RBGL Rgraphviz]; }; SEMsens = derive2 { name="SEMsens"; version="1.5.5"; sha256="0jgc78xxjbm2b1l0b72s84y1dmg9vvw23y07p4gh66jzl07dh5gf"; depends=[lavaan]; }; + SEPaLS = derive2 { name="SEPaLS"; version="0.1.0"; sha256="13bdrbx08whjw0i0dir6nvb1brfa6rrdhpr0b9qlr3bixafhak03"; depends=[]; }; SESraster = derive2 { name="SESraster"; version="0.7.0"; sha256="08lj7prqfb7ngjh6km9q2zcmmjvivnpw3f2pvakjarl312f53kla"; depends=[rlang terra]; }; SEofM = derive2 { name="SEofM"; version="0.1.0"; sha256="0662f4ayr05h33myxbfal682fxfwpl3a94kv4bzc8hil9bcqcznf"; depends=[]; }; SEset = derive2 { name="SEset"; version="1.0.1"; sha256="127z85m95xn46s7lk3sdzrs73mi7pa2smx9r80fnl678f2kyz6lm"; depends=[combinat Matrix Rdpack]; }; SFS = derive2 { name="SFS"; version="0.1.4"; sha256="1pig64pj30yyfzyv97f74gshw4lnklrx0npp4da3absk6anb3iv7"; depends=[Rcpp RcppArmadillo]; }; - SFSI = derive2 { name="SFSI"; version="1.2.0"; sha256="0mfi0x4abivg0l398m58qzg5hrsscf36d3l7aq3zfghrf20qzd76"; depends=[float]; }; + SFSI = derive2 { name="SFSI"; version="1.3.1"; sha256="1h085bihjlbfa1ma63ngcshfw97fx0k879lpxjj82s1dbazagkdg"; depends=[ggplot2 igraph reshape2 scales tensorEVD viridis]; }; SFtools = derive2 { name="SFtools"; version="0.1.0"; sha256="08k2ywkpk1pzp0qcwm7qx9gnv9hglspl9hrsrrfblagdpkw6rm2x"; depends=[doParallel ff wordspace]; }; - SGB = derive2 { name="SGB"; version="1.0.1"; sha256="0j48fx9bf2k8k3ykp629jfi1jbs23673nz6rg54rvcrrsl6hb9v3"; depends=[alabama Formula MASS numDeriv]; }; + SGB = derive2 { name="SGB"; version="1.0.1.1"; sha256="0lhb0rqih154lxzczdk8i613my3zwym9479n3r4h9xym9bjq80lr"; depends=[alabama Formula MASS numDeriv]; }; + SGDinference = derive2 { name="SGDinference"; version="0.1.0"; sha256="13sqchniiq5d8k0rkilmn33lhl5lrqkswwny3zzk6d6alh6x7jh8"; depends=[Rcpp RcppArmadillo]; }; SGL = derive2 { name="SGL"; version="1.3"; sha256="055mx876ydg4kzvcm6rxfkxqz849zgzkzsskvrfgwj9fs1k6ja2v"; depends=[]; }; SGP = derive2 { name="SGP"; version="2.1-0.0"; sha256="1msz3ccgmmwwla70gwwichgzjhzym942wa6hw0imr5cgkm4hk0kq"; depends=[Cairo callr colorspace crayon data_table digest doParallel equate foreach gridBase gtools iterators jsonlite matrixStats plotly quantreg randomNames rngtools RSQLite sn svglite toOrdinal]; }; SGPdata = derive2 { name="SGPdata"; version="27.0-0.0"; sha256="0d6lwxqp9ajzinfg258gaqr2k537v32f1gfn7565vsdrlp9miki3"; depends=[crayon data_table]; }; @@ -4881,35 +4971,34 @@ in with self; { SIAmodules = derive2 { name="SIAmodules"; version="0.1.0"; sha256="1jd72pvkqsciql76crikn3r6nrxgwz8yxlsnla51i1hx5qb8ix73"; depends=[cli difNLR dplyr DT forcats ggplot2 glue lme4 magrittr mirt mirtCAT plotly purrr rlang scales shiny ShinyItemAnalysis shinyjs stringr tibble tidyr yaml]; }; SIBER = derive2 { name="SIBER"; version="2.1.9"; sha256="00sr2h0fry102z2jdzsf20jav04gfskdcznzfpkjr4y5h4vv62cb"; depends=[dplyr ggplot2 hdrcde magrittr mnormt purrr rjags spatstat_geom spatstat_utils tidyr]; }; SIBERG = derive2 { name="SIBERG"; version="2.0.3"; sha256="1d8kx5m86qil50d8fhwn7lwaigdnppzk0cwyh4hv54lwffpclnki"; depends=[mclust]; }; + SID = derive2 { name="SID"; version="1.1"; sha256="0wqbv9mlrcf0kjdd8n43vf7fjlhp2nialaaid5dfjsxnlzbf1sl6"; depends=[igraph Matrix pcalg RBGL]; }; SIDES = derive2 { name="SIDES"; version="1.18"; sha256="12a87kdbdhqqjjs0k99c1fv0mxi0gjhvq71rm9wvx3wkf0s5p5sv"; depends=[doParallel foreach MASS memoise multicool nnet survival]; }; SIGN = derive2 { name="SIGN"; version="0.1.0"; sha256="1ak4zv5a50iknrxpfw1iffn8gv8mc0rz2gk96nzky9zx6li5drhk"; depends=[GSVA survcomp survival]; }; SIHR = derive2 { name="SIHR"; version="2.0.1"; sha256="1pn59ydm4rr8jkqkrfrrip92pic8710qaazc3ccw6pvhvw20n46a"; depends=[CVXR glmnet]; }; SILGGM = derive2 { name="SILGGM"; version="1.0.0"; sha256="1lhmisgg2zbfksl7czz0fqag3732gkjc44n615ipxbdi2pvnc7m0"; depends=[glasso MASS Rcpp reshape]; }; SILM = derive2 { name="SILM"; version="1.0.0"; sha256="1iaivpdx18djfm5dqak0q9kfl1xfrnx3gk5x9a4y53h1d7jhl9p6"; depends=[glmnet hdi scalreg SIS]; }; - SIMEXBoost = derive2 { name="SIMEXBoost"; version="0.1.0"; sha256="0gxw8xb2hvsizawfd863c268q5wq1cdsmdsand5iys2b9gry1pmq"; depends=[MASS]; }; + SIMEXBoost = derive2 { name="SIMEXBoost"; version="0.2.0"; sha256="1w7r4rw4zbfk3ks3iinsvv0fcmc15xlq8ybb6bhfafki298kingi"; depends=[MASS]; }; SIMICO = derive2 { name="SIMICO"; version="0.2.0"; sha256="0inyiv2ccz6amdwy94liln0lfs9f12nwq6l0wcqvj42idyjas4ky"; depends=[bindata CompQuadForm fastGHQuad ICSKAT]; }; SIMMS = derive2 { name="SIMMS"; version="1.3.2"; sha256="1pdbgqndnhgyfcwgr5ijnnmn64cwlalwbanb2grkm7h80bpql3lw"; depends=[doParallel foreach glmnet MASS randomForestSRC survival]; }; SIMPLE_REGRESSION = derive2 { name="SIMPLE.REGRESSION"; version="0.1.6"; sha256="06kqmvj8pbfgnlib0d6dzg1bh41l6jgwx6b02lgvc6z3nqnpm08w"; depends=[nlme]; }; SIMle = derive2 { name="SIMle"; version="0.1.0"; sha256="1lwi9dxv93f6fnc3j0lkl7kvf806z5f5s8flxzm2km3j5fl0bp2j"; depends=[ggplot2 Matrix plotly RCurl Sie2nts stringr]; }; SIMplyBee = derive2 { name="SIMplyBee"; version="0.3.0"; sha256="0013sdgyq29w9yah1yafkd0vj9sgw5lkhi5g5fcb59w386nlfhm5"; depends=[AlphaSimR extraDistr R6]; }; - SIPDIBGE = derive2 { name="SIPDIBGE"; version="0.1.9"; sha256="0ns4id5nb64m2i32nfhrwwckrr16896xhwkjr73i5d091wgyl0f3"; depends=[cli COVIDIBGE PNADcIBGE png PNSIBGE purrr rstudioapi tibble]; }; + SIPDIBGE = derive2 { name="SIPDIBGE"; version="0.2.0"; sha256="1s7mdw00sdmyf9ji9h1ix1mrkzm9v2nxxy2b36zcp76kpxyyxs5n"; depends=[cli COVIDIBGE PNADcIBGE png PNSIBGE purrr rstudioapi tibble]; }; SIPETool = derive2 { name="SIPETool"; version="0.1.0"; sha256="1w5sidiajrckps358xr526jfb4d0845p595qhr5i9b9q506n0klk"; depends=[Convolutioner]; }; SIPmg = derive2 { name="SIPmg"; version="1.4.1"; sha256="1f3jirfnxxbrkala5kk0hkkm8gn2zciva6xy459vc80y058hr7z1"; depends=[data_table DESeq2 dplyr ggplot2 ggpubr HTSSIP lazyeval magrittr MASS phyloseq plyr purrr rlang stringr tibble tidyr]; }; SIRE = derive2 { name="SIRE"; version="1.1.0"; sha256="0f624j087k7krg73bqn2qxdgzq66jyhvzz8n024vz3h4hwagxs5n"; depends=[dplyr igraph magrittr MASS Matrix matrixcalc numDeriv psych Rsolnp stringr systemfit]; }; - SIRmcmc = derive2 { name="SIRmcmc"; version="1.1"; sha256="1dqcp0mrddw0zl3zx0z077vd1x0p3q1j5cv8hxln9blmiv1lggx1"; depends=[Rcpp]; }; SIRthresholded = derive2 { name="SIRthresholded"; version="1.0.2"; sha256="19jslr3yy4m7i7xm3769dm43qh164w48hc36rdl6lwphydixn97m"; depends=[strucchange]; }; SIS = derive2 { name="SIS"; version="0.8-8"; sha256="1f5czwcgpmmn8habm24p3xh4w7jn2faais2x2gmaiq4dpjfnv6h8"; depends=[glmnet ncvreg survival]; }; SISIR = derive2 { name="SISIR"; version="0.2.2"; sha256="0lmhwi8cm1gq761wzjmsgmqb6p62asr881yjwvyc4hxm2sybfqyz"; depends=[adjclust aricode Boruta CORElearn dendextend doParallel dplyr expm foreach ggplot2 glmnet magrittr Matrix mixOmics purrr ranger RColorBrewer reshape2 rlang RSpectra tidyr tidyselect]; }; SIT = derive2 { name="SIT"; version="0.1.0"; sha256="0s6fqw6gh96d0a194jh6qnph90zjvgjbh9fhprwncb4k2zma40rm"; depends=[Rcpp RcppArmadillo]; }; SITH = derive2 { name="SITH"; version="1.1.0"; sha256="1626nsbnz4fh49wymxm1cqb0nrfyxhmh9fmdxr62dzj5b53amknc"; depends=[Rcpp scatterplot3d]; }; - SIfEK = derive2 { name="SIfEK"; version="0.1.0"; sha256="037ps6yfy7w6i8vm0b78c8w9kdmw312dl5nc2qz86rfk8kjg7w27"; depends=[MASS numDeriv ramcmc smfsb]; }; SK4FGA = derive2 { name="SK4FGA"; version="0.1.1"; sha256="0jfs1x27ybd95qqxybwcf9bdn3yvhhp435g97yb13g6myc3c8sam"; depends=[Rcpp]; }; SKAT = derive2 { name="SKAT"; version="2.2.5"; sha256="1x2iyvzc66lmzwjdr8hy5gf3nxc7ik5vhbs40w00d2m7nr3glh8l"; depends=[Matrix RSpectra SPAtest]; }; SKNN = derive2 { name="SKNN"; version="3.1"; sha256="1qqf2l4gvwnfdi0z5bk211nax8pcc09xbc4nw09lq7fy0icd2585"; depends=[]; }; SLBDD = derive2 { name="SLBDD"; version="0.0.4"; sha256="06v2id6rqdn9gcjmnpixdfxgh7wvqx9xpna6lnciqz974k8lblsb"; depends=[cluster corpcor fGarch forecast glmnet gsarima imputeTS MASS Matrix matrixcalc MTS rnn TSclust tsoutliers]; }; SLCARE = derive2 { name="SLCARE"; version="1.0.1"; sha256="0gvvfhdf1ihgwgwx4pqqpm8nb2b914qphf3mr26lk741r5rm4ylc"; depends=[dplyr ggplot2 nnet reReg tidyr]; }; SLDAssay = derive2 { name="SLDAssay"; version="1.8"; sha256="04ykj7s9kpvg5bmf7x16154kfpdy45b7y7hhyh31sxlscv7c5bbp"; depends=[]; }; - SLEMI = derive2 { name="SLEMI"; version="1.0.1"; sha256="07bsy0v8grx1l5837jr8mdab08521kxivhwr59q3s0v6f08683yd"; depends=[caret corrplot doParallel e1071 foreach ggplot2 ggthemes gridExtra Hmisc nnet reshape2 stringr]; }; + SLEMI = derive2 { name="SLEMI"; version="1.0.2"; sha256="0fpnnzzflgahmiy1hypss215qbmq2wf35ps34r1izhvww5cj8f4r"; depends=[caret corrplot doParallel e1071 foreach ggplot2 gridExtra Hmisc nnet reshape2 stringr]; }; SLFPCA = derive2 { name="SLFPCA"; version="3.0"; sha256="1zib01240ds8q0cafp0dpz70jvjy322hnxg26f16h1lpmn55l0aj"; depends=[fda fdapace psych]; }; SLHD = derive2 { name="SLHD"; version="2.1-1"; sha256="0y3ilxd0phmks8zkmpgw7p5zrkwq4k95h976cwk58pavvhfwj9kb"; depends=[]; }; SLIDE = derive2 { name="SLIDE"; version="1.0.0"; sha256="0x4fm29r7icg33k8gw3vqvxib8n9a1xwg484x9yffybips9ka22c"; depends=[]; }; @@ -4936,6 +5025,7 @@ in with self; { SMR = derive2 { name="SMR"; version="2.1.0"; sha256="0gg3al3qpcvw3k5zm4j36kbd2ar7pqgxxx0jngcg76j1sjhz9g9m"; depends=[Rcpp]; }; SMUT = derive2 { name="SMUT"; version="1.1"; sha256="029ishj3jfq957bbkb2xw4jj0qpm4dasb8vpdik43pvd670mgq5s"; depends=[MASS Rcpp RcppEigen SKAT]; }; SMVar = derive2 { name="SMVar"; version="1.3.4"; sha256="1mh15iggzbd7ip15pkwzmiy8p712cvvns5pgdyw1pvkcvbvkxsma"; depends=[]; }; + SNBdata = derive2 { name="SNBdata"; version="0.2.1"; sha256="1066bz4pg27pfg9cl1ykgzvyvdcrqqchcnsjka9yy8wx3fvp018p"; depends=[]; }; SNFtool = derive2 { name="SNFtool"; version="2.3.1"; sha256="05hz230aq5wbzhknxzr4iqv3nqjhbpf66n6bp1rc5h2jgz2yfbwq"; depends=[alluvial ExPosition]; }; SNPannotator = derive2 { name="SNPannotator"; version="0.2.6.0"; sha256="0g2k6ijsrqnwqj6llrfvsgzk1hgf96c0pd8rg5ry633jvjngf5v2"; depends=[data_table doParallel foreach ggplot2 httr jsonlite kableExtra openxlsx progress rmarkdown xml2]; }; SNPassoc = derive2 { name="SNPassoc"; version="2.1-0"; sha256="0ffsxlvdpd77sav5jjzv6vx5vwhh5gmw55ndzvf4299nnx5l2xka"; depends=[ggplot2 haplo_stats mvtnorm plyr poisbinom survival tidyr]; }; @@ -4943,7 +5033,7 @@ in with self; { SNPknock = derive2 { name="SNPknock"; version="0.8.2"; sha256="121pdgvdffj61hw8x8m76na0cg5iw5gb586q05ikw5d959mmbzrs"; depends=[Rcpp RcppArmadillo RcppProgress Rdpack]; }; SNSFdatasets = derive2 { name="SNSFdatasets"; version="0.1.0"; sha256="0wqx2xxgz97z9vlxkqla1zsmxxdcpc9byzbd0wjgfkvq0mr0vfaf"; depends=[]; }; SNSchart = derive2 { name="SNSchart"; version="1.4.0"; sha256="18rpg2zkqa6bxnbq3s0hlsg4wizz6iw3vckf5z66q3awxqycabg9"; depends=[MASS]; }; - SNSeg = derive2 { name="SNSeg"; version="1.0.0"; sha256="00mdr1qzgy8ggdccwll1jgqh74k1ljg7r488a44yzy5069478cd3"; depends=[evd mvtnorm Rcpp truncnorm]; }; + SNSeg = derive2 { name="SNSeg"; version="1.0.1"; sha256="1l6vi8ipl4jf1dmkv8mzqs79rn2qip6xf7g9sny7rnkk1i25axcy"; depends=[evd mvtnorm Rcpp truncnorm]; }; SNSequate = derive2 { name="SNSequate"; version="1.3-4"; sha256="122x0l6lkih99n9ay3mj76ssk5h2cqh477xpizqvp3b6nkj8wkf3"; depends=[emdbook knitr magic plyr progress statmod]; }; SOAR = derive2 { name="SOAR"; version="0.99-11"; sha256="1n38gx5sxpkqfkk4y6vpp6g19b8bs5bisni9wn6311s0csizp86m"; depends=[]; }; SOAs = derive2 { name="SOAs"; version="1.4"; sha256="1a3gwqyhw9fzb06xmyapxw0xyff1arb4sfsg3id7blkgxsmahd75"; depends=[combinat conf_design DoE_base FrF2 igraph lhs partitions sfsmisc]; }; @@ -4969,8 +5059,8 @@ in with self; { SPCDAnalyze = derive2 { name="SPCDAnalyze"; version="0.1.0"; sha256="0zaxlc4dw678s0v22ghv7mc4vqsgkcnmbxh7065w6qj9vm7pg5kz"; depends=[lme4 nlme plyr]; }; SPCompute = derive2 { name="SPCompute"; version="1.0.3"; sha256="15jjx5ryxv6cjiz144gsi69pgba5dvxavdv8glqykwfz6ch42lq0"; depends=[Matrix]; }; SPECIES = derive2 { name="SPECIES"; version="1.1.4"; sha256="18x779wh9g4fskggkiz6ggvgis4wipf1nf6bygc1v5n2yvni4fsw"; depends=[]; }; - SPECK = derive2 { name="SPECK"; version="0.1.1"; sha256="0vpnm3gkw77wh2d2znwnyz1fz1lmj0n0zyb8jyzbpjm6rxwhlhh8"; depends=[Ckmeans_1d_dp magrittr rsvd Seurat]; }; - SPEDInstabR = derive2 { name="SPEDInstabR"; version="2.0"; sha256="1mzl55ji2w3l33mwdzhmlkfj4dlpqxfzad1pyqd1c5q2xxw0hhbf"; depends=[]; }; + SPECK = derive2 { name="SPECK"; version="1.0.0"; sha256="0n67gqwd01klk8x3ds5ik11nwiga0138vdw3yhnrj1pp3pnpnq7k"; depends=[Ckmeans_1d_dp magrittr Matrix rsvd Seurat]; }; + SPEDInstabR = derive2 { name="SPEDInstabR"; version="2.1"; sha256="1jzsv53yzgg3k7mbm62hxswpsirk59yajy82b87mkhvar93gpmwl"; depends=[]; }; SPEI = derive2 { name="SPEI"; version="1.8.1"; sha256="1xn7hdj5h68mvkb81pmwha665c6k57pa7k59bb84zhvxgdnczksn"; depends=[checkmate ggplot2 lmom lmomco lubridate reshape TLMoments zoo]; }; SPEV = derive2 { name="SPEV"; version="1.0.0"; sha256="0gvbxmc0y8x2wf2lfgncwjhqy8gp8lk3mwmbcbhj8by0krglwipb"; depends=[]; }; SPIGA = derive2 { name="SPIGA"; version="1.0.0"; sha256="0yd06x5rh1h1s4v9apj43c90rkz8m5kssbny7y5mnw5mr2acds9b"; depends=[GA]; }; @@ -4984,32 +5074,33 @@ in with self; { SPREDA = derive2 { name="SPREDA"; version="1.1"; sha256="0fn4p5apjq8zgd3zms2b88ga5wbsv86y59ac5x06w75rf071xglv"; depends=[nlme survival]; }; SPSL = derive2 { name="SPSL"; version="0.1-9"; sha256="0kf6mmbvavid3dw2l4fkclk669wi13wkyykhwn5272d6qnhlhhca"; depends=[]; }; SPSP = derive2 { name="SPSP"; version="0.2.0"; sha256="0gf5cw2fnssl198ccpvnma4bcqi33whl6ihc1s9i2lw6xg4qvb33"; depends=[glmnet lars Matrix ncvreg Rcpp]; }; - SPUTNIK = derive2 { name="SPUTNIK"; version="1.4.1"; sha256="0446qh43q09l7kvcgsp4gkp7p9v9448xx0xwngxgghnnmwh8fa4p"; depends=[doSNOW e1071 edgeR foreach ggplot2 imager infotheo irlba reshape spatstat_explore spatstat_geom viridis]; }; SPYvsSPY = derive2 { name="SPYvsSPY"; version="0.1.1"; sha256="1hxc73wwrzqh1r1xr9yd4hy4ma24virg4iv978lfyc9f9n56znp5"; depends=[]; }; SPlit = derive2 { name="SPlit"; version="1.2"; sha256="0n9458sj5sw4k9qd11gvmqmjf9hy1hh0bwx1jzm6r901l1wbp7xi"; depends=[Rcpp RcppArmadillo]; }; SPmlficmcm = derive2 { name="SPmlficmcm"; version="1.4"; sha256="1acs3560a7h6xx286m40abr9b7i5qihn6wni8flj0biahmsszzx6"; depends=[nleqslv]; }; SPreg = derive2 { name="SPreg"; version="1.0"; sha256="1702i86qcbnqyi7r5wc2ciyk3l46329kmnrz91jzqq85z8cwgak1"; depends=[sn ucminf]; }; SQI = derive2 { name="SQI"; version="0.1.0"; sha256="1mb1vzc8r52zr1rp4dakmsdayv47pqsbissljskl9c0nkhlah1kq"; depends=[dplyr FactoMineR matrixStats olsrr readxl]; }; SQL = derive2 { name="SQL"; version="0.1.1"; sha256="1l949crb4fz13yxbr9gag7lfqs9ak3ab3i25g20mjrz6iix99hrd"; depends=[arrow DBI duckdb stringr]; }; - SQLove = derive2 { name="SQLove"; version="0.0.2"; sha256="0r0jl56a75n6mqfaplihjrr5v4rfnc2z548phli3y2vhvzd74yb7"; depends=[DBI readr RJDBC]; }; + SQLove = derive2 { name="SQLove"; version="0.0.4"; sha256="0k746spnhi07rdw8lbblsxgabqlzr3h368svxhs7987r333wlsyh"; depends=[DBI readr RJDBC]; }; SQMtools = derive2 { name="SQMtools"; version="1.6.3"; sha256="0c725f0ksafxhgwhdb44h72gcs352afxi0gb843snnqwn5jmmsgh"; depends=[data_table ggplot2 pathview reshape2]; }; SQN = derive2 { name="SQN"; version="1.0.6"; sha256="1p7h4id8xz6dh5nn2935pj5b82mcmpmm8mj32l5i4wgwnh1amphp"; depends=[mclust nor1mix]; }; - SQRL = derive2 { name="SQRL"; version="1.0.1"; sha256="0xn4dywgaxszjinb9ypllmj7s04rx1l7rrir30vd25kj510mramm"; depends=[RODBC]; }; + SQRL = derive2 { name="SQRL"; version="1.0.2"; sha256="05qyrdvgrkv6r88pgwin8llh7qfzkivnrwz5ba1cwkbqg3pvfjhv"; depends=[RODBC]; }; SQUAREM = derive2 { name="SQUAREM"; version="2021.1"; sha256="0n1s32l9p4vdm3h5q6g43s0qbpzry08difsh0yay80wrla6f3rb6"; depends=[]; }; SRCS = derive2 { name="SRCS"; version="1.1"; sha256="13zf3cqs53w68f9zc1fkb9ql84rvzn7g1hbykqrbvss8hjaq8x1r"; depends=[]; }; SRS = derive2 { name="SRS"; version="0.2.3"; sha256="0nx1sj91xkwplcmflq9c21zndaa4m21m9iqax86v947k070q48ql"; depends=[DT shiny shinybusy shinycssloaders vegan]; }; SRTsim = derive2 { name="SRTsim"; version="0.99.6"; sha256="1436lhpjbciln8xmr9sd7d0akh5kap8a9f0az7209c1zqc46i576"; depends=[concaveman dashboardthemes dplyr FNN ggplot2 ggpubr magrittr MASS Matrix matrixStats Morpho pdist plotly S4Vectors sf shiny shinyBS shinydashboard sp spatstat_geom spatstat_random viridis]; }; SRTtools = derive2 { name="SRTtools"; version="1.2.0"; sha256="1203i6nqclx0faxyvhdaapmfxy8h95jj83svxriqh1hpava5s1dy"; depends=[magrittr]; }; - SSBtools = derive2 { name="SSBtools"; version="1.4.8"; sha256="166799mvgpjzkfcjk205p6xaxh71lngby164n4dhzggsx4gzv3wi"; depends=[MASS Matrix stringr]; }; - SSDM = derive2 { name="SSDM"; version="0.2.8"; sha256="19l78dkjk76ababkd7xsfn0fy99khfa4i502q4vllpvch4cjz51c"; depends=[dismo e1071 earth gbm ggplot2 mgcv nnet poibin randomForest raster reshape2 rpart scales shiny shinydashboard shinyFiles sp spThin]; }; - SSDforR = derive2 { name="SSDforR"; version="1.5.31"; sha256="1l66n5x7m90jw1r9cspb7i9k3wbc1xad4wc027bss40k9jwgqypw"; depends=[Kendall MAd MASS metafor psych SingleCaseES TTR]; }; + SSBtools = derive2 { name="SSBtools"; version="1.5.0"; sha256="1lsba4xilk9jdhbqp386kyg0y7p7vn97zb1v077aikkzs94qbyph"; depends=[MASS Matrix stringr]; }; + SSDM = derive2 { name="SSDM"; version="0.2.9"; sha256="03w1rkzpkhhz251pcy57fmyq0jdf4cplv3ns0h7j76fs2v9pfn3x"; depends=[dismo doParallel e1071 earth foreach gbm ggplot2 iterators itertools leaflet magrittr mgcv nnet poibin randomForest raster reshape2 rpart scales sdm sf shiny shinydashboard spThin]; }; + SSDforR = derive2 { name="SSDforR"; version="1.5.34"; sha256="12lrvh9231cix5lkc53cf4fk11sfa89011kj2qddk3lkmcyvcwfz"; depends=[Kendall MAd MASS metafor modifiedmk psych SingleCaseES TTR]; }; + SSEparser = derive2 { name="SSEparser"; version="0.1.0"; sha256="1qjvrs8cv2m4g2rjcdylwss641z4cchzsdymn0lmmdpfcnfys1vy"; depends=[magrittr purrr R6 rlang stringr]; }; SSGL = derive2 { name="SSGL"; version="1.0"; sha256="1f65sc713bzi6nq7ay9jnz92bxh7lrzj6aj77dczkafac2vgmba2"; depends=[grpreg MASS pracma]; }; SSHAARP = derive2 { name="SSHAARP"; version="1.1.0"; sha256="0x8dinhhfk4q1cck7ms78f4k23430c4wyvlh2qclq0c83acjj4y9"; depends=[BIGDAWG data_table DescTools dplyr filesstrings gmt gtools stringr]; }; SSIMmap = derive2 { name="SSIMmap"; version="0.1.1"; sha256="1ydwwxisb8wwxb2n5xvz6474n4rwl57xpi4fa0b6jggkzxx113ig"; depends=[dplyr ggplot2 knitr scales sf terra]; }; SSLASSO = derive2 { name="SSLASSO"; version="1.2-2"; sha256="0vnn9ksdf0qgjflgx1sfj6q6j9jfnarbx2222rh9kb10jy8b16jv"; depends=[]; }; SSLR = derive2 { name="SSLR"; version="0.9.3.3"; sha256="0fv1jqri3gpzcfs429pgx4hjqmjrglb4g7nfqdihd2hjmq9k4sql"; depends=[conclust dplyr foreach generics magrittr parsnip plyr proxy purrr RANN Rcpp RcppArmadillo rlang RSSL]; }; SSM = derive2 { name="SSM"; version="1.0.1"; sha256="1h8yyzh5rn5jay70kyzvwirfndi049a5w28qigrjv5rxd7ml84l7"; depends=[]; }; - SSNbayes = derive2 { name="SSNbayes"; version="0.0.2"; sha256="0y5n9c9a6kd53ijai18arpsm09jp3v3f31zgg22y0pz6i3y24hm3"; depends=[dplyr plyr rstan]; }; + SSN2 = derive2 { name="SSN2"; version="0.1.0"; sha256="1r9izkcib7a4l1sq611ily82zncl01r4yr43cr8blffldsyvpl1f"; depends=[generics Matrix RSQLite sf spmodel tibble]; }; + SSNbayes = derive2 { name="SSNbayes"; version="0.0.3"; sha256="1smfd7mas19y8n4jpywphck54crxn15lnc8dpi9s5il50icr2hls"; depends=[dplyr plyr rstan sf SSN2]; }; SSOSVM = derive2 { name="SSOSVM"; version="0.2.1"; sha256="11wlalpw6yhvv95xr8vvgxgl4jafc2ghzsk5wqyv71ahxarmrlss"; depends=[MASS mvtnorm Rcpp RcppArmadillo]; }; SSP = derive2 { name="SSP"; version="1.0.1"; sha256="0ccg81rsjki1fcqvj6lgmmmy5yw1gxy8khajl1i80qyi4v7ny9hk"; depends=[ggplot2 sampling vegan]; }; SSRA = derive2 { name="SSRA"; version="0.1-0"; sha256="1d0lg2dz8vf1d63366s5apm0ygrsfxivbrsij907r244zj6i1c37"; depends=[shape stringr]; }; @@ -5029,22 +5120,20 @@ in with self; { STEPCAM = derive2 { name="STEPCAM"; version="1.2"; sha256="03crbc7hag8w333j9c7k0q7zy7xmfid4lq773p74r55jmac5xpjf"; depends=[ade4 ape FD geometry gtools MASS vcd]; }; STFTS = derive2 { name="STFTS"; version="0.1.0"; sha256="1cv2gc9334fbsmmwhqskfssaql6kr9i680p2zkwhm5735dr1h49h"; depends=[e1071]; }; STGS = derive2 { name="STGS"; version="0.1.0"; sha256="0xfwd0jsg3glbr3c5l5yyri4is5kg77ivgr6qlzaxp6p8q7yfzqf"; depends=[brnn glmnet kernlab randomForest rrBLUP]; }; - STMr = derive2 { name="STMr"; version="0.1.5"; sha256="1wz88y1fr2z7jwmni063j4rk1smbpbmgz6aw9cgfivz7gsps879n"; depends=[dplyr ggfittext ggplot2 magrittr nlme quantreg tidyr]; }; + STMr = derive2 { name="STMr"; version="0.1.6"; sha256="0xkjlp51985pjld7ra8alcifbbmf4j7kdyg8hrcwqbc15b6m5qmg"; depends=[dplyr ggfittext ggplot2 magrittr minpack_lm nlme quantreg tidyr]; }; STOPES = derive2 { name="STOPES"; version="0.2"; sha256="0dlr9hasily74wlwb44qadql9qdii326xhdnam1anszsvijzs4dk"; depends=[changepoint cvTools glmnet MASS]; }; STPGA = derive2 { name="STPGA"; version="5.2.1"; sha256="0mwjv9r7x925ljmbwk2fl0xvf2n2hnf5n5z5p5rxr57ywvirqw1b"; depends=[AlgDesign emoa scales scatterplot3d]; }; - STREAK = derive2 { name="STREAK"; version="0.1.0"; sha256="0y6m7m2wpksymqnp4h1vangg70nz3qk1crd12g69smr02lg3amnk"; depends=[Ckmeans_1d_dp Matrix Seurat SPECK VAM]; }; + STREAK = derive2 { name="STREAK"; version="1.0.0"; sha256="1gi228y3rn187pkr74abiydlkdwaahd9b9nn5dn5433y69kwnkw5"; depends=[Ckmeans_1d_dp Matrix Seurat SPECK VAM]; }; STRMPS = derive2 { name="STRMPS"; version="0.5.8"; sha256="0vlmhrna0laqzjpbg4sgnscrli3cly2lc5d69n6iqfl213zsfz78"; depends=[Biostrings dplyr IRanges purrr ShortRead stringr tibble tidyr]; }; STV = derive2 { name="STV"; version="1.0.2"; sha256="02cd78z2k08gg5kskw1m53dc2xyl9f8qhcnhvy9n90ckakw6h19h"; depends=[]; }; STraTUS = derive2 { name="STraTUS"; version="1.1.2"; sha256="0n3i7gbycp1f10058h9xlh3yk21w2izdb3xgs793mmh1i1sjy394"; depends=[ape ggplot2 ggtree gmp igraph phangorn RcppAlgos]; }; SUMMER = derive2 { name="SUMMER"; version="1.3.0"; sha256="082ziawqkqgq18ghy46fgk7l5d1k9ls135qbzqkmb4xwiy1v2avm"; depends=[data_table ggplot2 ggridges Matrix RColorBrewer reshape2 scales shadowtext sp spdep survey survival viridis]; }; - SUNGEO = derive2 { name="SUNGEO"; version="1.1.1"; sha256="1sy9kw3nr69jf33034kcnv418lqyz6sfrd01646i7dfsm64aydp2"; depends=[automap cartogram data_table dplyr httr jsonlite measurements packcircles purrr RANN raster Rcpp RCurl rlang rmapshaper sf sp spdep stringr terra]; }; + SUNGEO = derive2 { name="SUNGEO"; version="1.2.1"; sha256="19r6xw1mxyx8n0sv6kxwvr7rp7ahyzziwizgm2la9h0j5dyk58jw"; depends=[automap cartogram data_table dplyr httr jsonlite measurements packcircles purrr RANN raster Rcpp RCurl rlang rmapshaper sf spdep stringr terra]; }; SUSY = derive2 { name="SUSY"; version="0.1.0"; sha256="0l0mxvas80d9n3vv9bqxw2dk8q1ikwg616hraprcs70aabh7717w"; depends=[]; }; SVDNF = derive2 { name="SVDNF"; version="0.1.8"; sha256="1dps1qjr3a9wwzmi6vdr515lhvqligjhm7qdh7frii1y9lc4hzc2"; depends=[Rcpp]; }; SVN = derive2 { name="SVN"; version="1.0.1"; sha256="0n93lqb1f2s2qvzc8lrcqmr0fhd57xqbi0ymrqqmll31ns679m92"; depends=[data_table igraph memoise]; }; SWIM = derive2 { name="SWIM"; version="1.0.0"; sha256="1pfrwxn4rha7a68b82lq18x6acyhjy9d8nn2hdwd9hhf576vkvhg"; depends=[ggplot2 Hmisc nleqslv plyr Rdpack reshape2]; }; SWMPr = derive2 { name="SWMPr"; version="2.5.0"; sha256="1p7gzyzdm3fiam76dwl2sb3drphifakx2mj5jz1v3gp57xyhihiz"; depends=[data_table dplyr ggplot2 gridExtra httr lattice oce openair RColorBrewer reshape2 suncalc tictoc tidyr XML zoo]; }; - SWMPrExtension = derive2 { name="SWMPrExtension"; version="2.2.4.2"; sha256="0vvmpghwrd66y92d9mb93i38siyd0jx6vlafbir1inkmpcpa62a0"; depends=[broom dplyr EnvStats flextable ggimage ggplot2 ggthemes lubridate magrittr officer purrr RColorBrewer rlang scales sf SWMPr tidyr tidyselect]; }; - SWTools = derive2 { name="SWTools"; version="1.0"; sha256="0mdkbzph4q989wi66xawkxca0zvpnnisk5wxbb91ylb05r84qpzf"; depends=[dplyr forcats ggmap ggplot2 httr jsonlite lubridate magrittr readr reshape2 rlang rmarkdown segmented sf sp stringr tibble tidyr zoo]; }; SYNCSA = derive2 { name="SYNCSA"; version="1.3.4"; sha256="0n9za302x638s666xs86zy94qch9wn0rln8xy6x9jymhhq9zn0kj"; depends=[FD permute RcppArmadillo vegan]; }; SafeVote = derive2 { name="SafeVote"; version="1.0.0"; sha256="1shv5l0grx3bsb0md5ann5dyh18w9i4q2nsar0qmd6cgl87ml4qn"; depends=[data_table dplyr fields forcats formattable ggplot2 knitr stringr]; }; SailoR = derive2 { name="SailoR"; version="1.2"; sha256="04qrnps40845ypapf37jg1c1g05nii6iwk4fv1x5xyca963hl5ii"; depends=[]; }; @@ -5055,6 +5144,7 @@ in with self; { SamplingStrata = derive2 { name="SamplingStrata"; version="1.5-4"; sha256="093x9rfilxhgf75p0rfsvglz0sg3imhdm15azxnjiblamyxbhfjm"; depends=[doParallel glue memoise pbapply SamplingBigData]; }; SanFranBeachWater = derive2 { name="SanFranBeachWater"; version="0.1.0"; sha256="18w2q3hzcrbmagnjyrn1ikwiyjh723mjb2vy0d8p1a6za0460p9w"; depends=[dplyr lubridate magrittr readr rvest tibble xml2]; }; SangerTools = derive2 { name="SangerTools"; version="1.0.2"; sha256="0ijxfa1h3mx86jk1s27qp7l4sz2d7i7llkwjvgnih9zjk0ybrdzw"; depends=[DBI dplyr ggplot2 ggtext ggthemes janitor magrittr odbc readr readxl rlang scales tibble]; }; + ScRNAIMM = derive2 { name="ScRNAIMM"; version="0.1"; sha256="0r69nbmpd42j547li34psj9kbkf5wckayzs9mz0ybjpzi92wx99y"; depends=[dplyr magrittr mclust nortest scDHA]; }; ScaleSpikeSlab = derive2 { name="ScaleSpikeSlab"; version="1.0"; sha256="11n3pi15x77by0ikiawhnvlky6hp6qzwmsmp4l2hjng1469y7gg6"; depends=[Rcpp RcppEigen TruncatedNormal]; }; Scalelink = derive2 { name="Scalelink"; version="1.0"; sha256="0likfjw5999zd0kv1ykby78bl0x3xgh0v1yjssk7fnw1ghkxgdib"; depends=[Rcpp RcppParallel]; }; ScatterDensity = derive2 { name="ScatterDensity"; version="0.0.4"; sha256="126jvjgfja6vyjadl3a7ahpb8z99hazijai4ymvnr1g1wcnx1z19"; depends=[pracma Rcpp RcppArmadillo]; }; @@ -5067,9 +5157,11 @@ in with self; { ScreenClean = derive2 { name="ScreenClean"; version="1.0.1"; sha256="0haanr05g4vwp5apncyzv8i3r61g4xf9ihm8ilcabcgpri56gpjk"; depends=[MASS Matrix quadprog]; }; ScriptMapR = derive2 { name="ScriptMapR"; version="0.0.3"; sha256="18pd23yqn3ai1yfl149081n42hbh0d57hm71s2lhm1z7a5ccjkmf"; depends=[dplyr formatR RCy3 stringr]; }; SeBR = derive2 { name="SeBR"; version="1.0.0"; sha256="0xk002y4nim5f3mcfbl3zk484cf2s5mvg1paj2jg4f5v60vr4pwp"; depends=[fields GpGp MASS quantreg spikeSlabGAM statmod]; }; + SeaVal = derive2 { name="SeaVal"; version="1.1.1"; sha256="1ghkq6vqnzzw711s309s5802hrc6q5vxa8ijlp46s579r61ifa3v"; depends=[data_table ggplot2 ggplotify lifecycle maps ncdf4 patchwork RColorBrewer scales]; }; SearchTrees = derive2 { name="SearchTrees"; version="0.5.5"; sha256="1n0y91y1l657g61klbcjz82ddj2csdpnralc3rbk1hbwr4nxk069"; depends=[]; }; SecDim = derive2 { name="SecDim"; version="3.2"; sha256="04l4qpw409dj5i494vmf7vmksis6910599gh259nbyv0pdfw5svr"; depends=[geosphere RcppArmadillo]; }; SeedCalc = derive2 { name="SeedCalc"; version="1.0.0"; sha256="1p8ncf3l2zhpbbblpjagg8cg9gf7f2izdcgc48n1aq4f7bmjbqgk"; depends=[]; }; + SeedMatchR = derive2 { name="SeedMatchR"; version="1.1.1"; sha256="138chb0z1gyhvl56g3a7zf4nash1v3v5l3qfxiqai2kxvladmz9y"; depends=[AnnotationHub Biostrings cowplot dplyr GenomeInfoDb GenomicFeatures ggmsa ggplot2 lifecycle msa stringr testit]; }; SegCorr = derive2 { name="SegCorr"; version="1.2"; sha256="1g4bwfs539jf7ckzjyindi3v1av7vd38yz16m7cb20qqa0a33kbj"; depends=[jointseg]; }; SegEnvIneq = derive2 { name="SegEnvIneq"; version="1.1"; sha256="0vkjkg2x9fziymhv3j3m0n23vm3g7jq4w12jgg5c37k6gyp1sqqj"; depends=[OasisR outliers sf spdep]; }; Sejong = derive2 { name="Sejong"; version="0.01"; sha256="0j10szvdn32b7xnvhcbj89xma64bq62936b3r18n1limjpismfws"; depends=[]; }; @@ -5086,11 +5178,11 @@ in with self; { SemiMarkov = derive2 { name="SemiMarkov"; version="1.4.6"; sha256="0nga790kcrvmbrx5asp4062711x0kjsccc246l4syiiw30b769ig"; depends=[MASS numDeriv Rsolnp]; }; SemiPar = derive2 { name="SemiPar"; version="1.0-4.2"; sha256="0pa3drpvclkw81ji5m1h5arj5c2rh03dnlff97cnnr1v5kvg1i4w"; depends=[cluster MASS nlme]; }; SenSpe = derive2 { name="SenSpe"; version="1.2"; sha256="1h7c7nxpbybi6i9ngj9r1yga5f746vbrgyb425xwbyll1s6l2dk0"; depends=[]; }; - SenSrivastava = derive2 { name="SenSrivastava"; version="2015.6.25"; sha256="0r4p6wafnfww07kq19lfcs96ncfi0qrl8n9ncp441ri9ajwj54qk"; depends=[]; }; + SenSrivastava = derive2 { name="SenSrivastava"; version="2015.6.25.1"; sha256="101qq84pii8m9naw0nnaqnbqbzjpfvvc2dql4a8hbihjhvyxbjxa"; depends=[]; }; SenTinMixt = derive2 { name="SenTinMixt"; version="1.0.0"; sha256="1yja63087nhb5c0wlql7yynjkhkrjw69amvz4w55xqvp605rh46f"; depends=[data_table doSNOW expint foreach mclust rlist snow tidyr TSdist withr zipfR]; }; SensMap = derive2 { name="SensMap"; version="0.7"; sha256="1aac3mr7jq6fl0r230igdwcmpivpd9by5sx1vbrz3rpircgy28nz"; depends=[doBy factoextra FactoMineR fields ggdendro ggplot2 glmulti lattice MCMCpack mgcv plotly reshape2 shiny]; }; SensitivityCaseControl = derive2 { name="SensitivityCaseControl"; version="2.2"; sha256="04gakb7pc88lygdixxxjwj0p6ylwq5jsy6zidyh5w37ch83m3hj6"; depends=[]; }; - SensoMineR = derive2 { name="SensoMineR"; version="1.26"; sha256="0wa6wq8jnk0h5hmx03f8h8pa1g4dw0f3lxrsi93mgz740xd559yf"; depends=[AlgDesign cluster FactoMineR ggplot2 ggrepel gtools KernSmooth reshape2]; }; + SensoMineR = derive2 { name="SensoMineR"; version="1.27"; sha256="0si7zklv94li8payg4zxcac1a7ivk90q4ckcyak536sqfinihpb3"; depends=[AlgDesign cluster FactoMineR ggplot2 ggrepel gtools KernSmooth reshape2]; }; SensusR = derive2 { name="SensusR"; version="2.3.1"; sha256="1x1a8vnpn6h7905wa4lvf7vibkl2dsa4yyg2sg4bbi719lcki2q0"; depends=[ggmap ggplot2 jsonlite lubridate openssl plyr R_utils]; }; SentimentAnalysis = derive2 { name="SentimentAnalysis"; version="1.3-5"; sha256="184nzmi17s86lvxa87ddq7vkmq6cmr7kss8bzz1ncp1nfcm2cczw"; depends=[ggplot2 glmnet moments ngramrr qdapDictionaries spikeslab stringdist tm]; }; SeqAlloc = derive2 { name="SeqAlloc"; version="1.0"; sha256="04rhr3gb2p9i35a3x4k8m0lv42ncfqlhx6sf3bq8yihppwrag8x3"; depends=[]; }; @@ -5101,18 +5193,19 @@ in with self; { SeqMADE = derive2 { name="SeqMADE"; version="1.0"; sha256="0nf1xjhk0kpmmzgcxycg3ccxvwq6gydjq7xq6n9m7k7v35v9v3qf"; depends=[MASS]; }; SeqNet = derive2 { name="SeqNet"; version="1.1.3"; sha256="1ix3c249q758si6670hqa56g1snqqwqdrwshfwajvynl7k2zqzmv"; depends=[fitdistrplus ggplot2 igraph mvtnorm purrr Rcpp Rdpack rlang tibble]; }; SequenceSpikeSlab = derive2 { name="SequenceSpikeSlab"; version="1.0.1"; sha256="0kxcz2xqf8hiz7j0hb20ikl2mwjpplbmsis5906f7lqvzg85v97x"; depends=[Rcpp RcppProgress selectiveInference]; }; - Sequential = derive2 { name="Sequential"; version="4.3"; sha256="00901m3c5jnf58p394ndbkjiagqfzcnn25k4279df7wyahfc46gl"; depends=[boot]; }; + Sequential = derive2 { name="Sequential"; version="4.3.2"; sha256="1vm9js7lsbhl4y0hwq4z2737xc4kzwf6sj95r64wc1ikan702lxq"; depends=[boot]; }; SequentialDesign = derive2 { name="SequentialDesign"; version="1.0"; sha256="1gi37pixwbpy7358id1c75rckr352hs8vjs8sk8qgsr97pkm5xdq"; depends=[Sequential]; }; SetMethods = derive2 { name="SetMethods"; version="4.0"; sha256="0pzxcqbc7jnsxhv902qw2q9rcqskib11z36d5nav9wny6bj2z658"; depends=[admisc betareg fmsb ggplot2 ggrepel QCA scatterplot3d stargazer]; }; SetTest = derive2 { name="SetTest"; version="0.2.0"; sha256="08wc6cbnannmwkncqhpcw6l0y7c1v7z3awk5j7fd853nszfmpbk0"; depends=[]; }; - Seurat = derive2 { name="Seurat"; version="4.4.0"; sha256="1pdlvjh5xs1fyj2zic98sfz9zazbb45qywfqnhfzqb34jyaxy5qg"; depends=[cluster cowplot fitdistrplus future future_apply ggplot2 ggrepel ggridges httr ica igraph irlba jsonlite KernSmooth leiden lmtest MASS Matrix matrixStats miniUI patchwork pbapply plotly png progressr purrr RANN RColorBrewer Rcpp RcppAnnoy RcppEigen RcppProgress reticulate rlang ROCR Rtsne scales scattermore sctransform SeuratObject shiny spatstat_explore spatstat_geom tibble uwot]; }; - SeuratObject = derive2 { name="SeuratObject"; version="4.1.4"; sha256="1vqhad76hnr0l47klg56fniah4cvpzbkkl0j1cn9cp3rv6d69rvl"; depends=[future future_apply Matrix progressr Rcpp RcppEigen rlang sp]; }; + Seurat = derive2 { name="Seurat"; version="5.0.1"; sha256="038mqnavn3gxxx41yzq0q7gfnnx15dizryv8l374zwavpqsb84q7"; depends=[cluster cowplot fastDummies fitdistrplus future future_apply generics ggplot2 ggrepel ggridges httr ica igraph irlba jsonlite KernSmooth leiden lifecycle lmtest MASS Matrix matrixStats miniUI patchwork pbapply plotly png progressr purrr RANN RColorBrewer Rcpp RcppAnnoy RcppEigen RcppHNSW RcppProgress reticulate rlang ROCR RSpectra Rtsne scales scattermore sctransform SeuratObject shiny spatstat_explore spatstat_geom tibble uwot]; }; + SeuratObject = derive2 { name="SeuratObject"; version="5.0.1"; sha256="0hgrymldcqja40prr23gwx1c7lvwjjwcla3dld6x8wzkzqh1gkjs"; depends=[future future_apply generics lifecycle Matrix progressr Rcpp RcppEigen rlang sp spam]; }; ShapeChange = derive2 { name="ShapeChange"; version="1.5"; sha256="0m9v5ykw8gfvyr9v149bs8sqjf9712yhvlg2rin6b5f1ww3mzl37"; depends=[coneproj quadprog]; }; ShapePattern = derive2 { name="ShapePattern"; version="3.0.1"; sha256="1vlzvfns6grxc2g0d4slsckg6lzzr0k38brncf2akb41jkczbyak"; depends=[igraph landscapemetrics raster sp terra]; }; ShapeRotator = derive2 { name="ShapeRotator"; version="0.1.0"; sha256="1pg2m1wh7fbchm8gp3mngfnf5g2rbhvzim1bpzqyvxqpx6ynicsa"; depends=[plot3D]; }; ShapeSelectForest = derive2 { name="ShapeSelectForest"; version="1.7"; sha256="096v3i0g4877zp883vi5n9cijbjdqga3dbinjlm5ws4j2zlghvb1"; depends=[coneproj raster]; }; ShapleyOutlier = derive2 { name="ShapleyOutlier"; version="0.1.1"; sha256="1qdb872cppq1dh33l75pxw4l7isp8nlsinbipygm989f1sf24xkh"; depends=[dplyr egg forcats ggplot2 gridExtra magrittr RColorBrewer Rdpack robustbase tibble tidyr]; }; ShapleyValue = derive2 { name="ShapleyValue"; version="0.2.0"; sha256="05ziyvvd81l0lx572in9snndnjdq8y4wkd8bxqs0y979l49yr6fd"; depends=[kableExtra MASS tidyverse]; }; + SharkDemography = derive2 { name="SharkDemography"; version="1.1.0"; sha256="188qzbixz44qvi1jqr76hmmamkxn43lc9sayrpsvwi3bhkj9ablw"; depends=[doFuture doParallel dplyr foreach interp iterators magrittr MASS popbio readr tidyr]; }; SharpeR = derive2 { name="SharpeR"; version="1.3.0"; sha256="1xq2m53n2gc706lyd16gccllx2wgwdrqkfpf79jwwdmipqfqnxjx"; depends=[matrixcalc]; }; SheetReader = derive2 { name="SheetReader"; version="1.1.0"; sha256="1l6agw4s7ak6cbgpidjz0rc1g34x4vv3731c8n5b5w1bj9s448kq"; depends=[Rcpp]; }; ShellChron = derive2 { name="ShellChron"; version="0.4.0"; sha256="1xb06zszwirn5l63qa9g99q9by58sdqpg8s6kiq70z5qqnlgiq5c"; depends=[dplyr ggplot2 ggpubr magrittr rtop scales tidyr zoo]; }; @@ -5123,7 +5216,7 @@ in with self; { ShinyLink = derive2 { name="ShinyLink"; version="0.2.2"; sha256="1idb95hdjllrhzm4fx1lrx3d2palbwjshm6ppjw916p7wg7y7wqn"; depends=[config DT fastLink gender ggplot2 ggvenn golem haven htmlwidgets jsonlite lubridate magrittr readxl shiny shinydashboard shinydashboardPlus shinyWidgets tidyr tidyselect vroom]; }; ShinyQuickStarter = derive2 { name="ShinyQuickStarter"; version="2.0.1"; sha256="19k46hwcab33l6dc43dp4hvvr366qh3z2jjw3b79x7f824wampnn"; depends=[colourpicker data_table dplyr fs ggplot2 miniUI plotly reshape2 shiny shinyalert shinydashboard shinyFiles shinyjs shinyWidgets stringi stringr styler]; }; ShinyTester = derive2 { name="ShinyTester"; version="0.1.0"; sha256="0wm4rl2p8ggw6v2chk9b6ygh5y8p8cwzbyra0nr0qr2ka97didp8"; depends=[dplyr purrr readr stringr tidyr visNetwork]; }; - ShortForm = derive2 { name="ShortForm"; version="0.5.2"; sha256="0qqcmdn3y1bfjrb5n9b19gi5c78avavisb1jm6wbz7y7rf9q0dbh"; depends=[doSNOW foreach ggplot2 ggrepel lavaan stringr tidyr]; }; + ShortForm = derive2 { name="ShortForm"; version="0.5.3"; sha256="1nlpn7rhk94jsdbhqa58rz07pl2gcf9rfc39h3bp4gh674wczn9g"; depends=[doSNOW foreach ggplot2 ggrepel lavaan stringr tidyr]; }; ShrinkCovMat = derive2 { name="ShrinkCovMat"; version="1.4.0"; sha256="0iyri3syjk9xv49d87fdyhnxg5c5x827vnak8vgckkkp62sdln2q"; depends=[Rcpp RcppArmadillo]; }; SiER = derive2 { name="SiER"; version="0.1.0"; sha256="1ng6vnh30z6z1nvclsdzc9gdbrsrb2kqdqvs6fwm0j1zqlk12x0y"; depends=[]; }; SiMRiv = derive2 { name="SiMRiv"; version="1.0.6"; sha256="1xwbfwhmlmgsbrg0cfgn1yp8f29vzsga8sw7fyclsf76dx9sbmc6"; depends=[mco raster]; }; @@ -5134,9 +5227,10 @@ in with self; { SigOptR = derive2 { name="SigOptR"; version="0.0.1"; sha256="1sylchhhz6kx4r8jx95cvsmjsacjh8pin7acf2fyw2a4nlx9r1a6"; depends=[httr jsonlite]; }; SigTree = derive2 { name="SigTree"; version="1.10.6"; sha256="18gh7azjr979ijc2y4yyskj24ay697rw3j7znc5p4a63s4vpxr9w"; depends=[ape MASS phyext2 phylobase phyloseq RColorBrewer vegan]; }; SightabilityModel = derive2 { name="SightabilityModel"; version="1.5.5"; sha256="1fj871q0mav3dffm3sjg4zsci0lm8z74nfgbbrv6jzab155vfrmc"; depends=[formula_tools Matrix msm mvtnorm plyr survey]; }; - Signac = derive2 { name="Signac"; version="1.11.0"; sha256="1igi690dn3lngns3z7b8w2isqkzdzxvnxh4zfx67yvfalhwwbahd"; depends=[BiocGenerics data_table dplyr fastmatch future future_apply GenomeInfoDb GenomicRanges ggplot2 IRanges irlba Matrix patchwork pbapply Rcpp RcppRoll rlang Rsamtools S4Vectors scales SeuratObject stringi tidyr tidyselect vctrs]; }; + Signac = derive2 { name="Signac"; version="1.12.0"; sha256="0dy9fhila2bi7dj7l57i1xb86ng6qkb0024f78gbmhxnpi9iwkqa"; depends=[BiocGenerics data_table dplyr fastmatch future future_apply GenomeInfoDb GenomicRanges ggplot2 IRanges irlba lifecycle Matrix patchwork pbapply Rcpp RcppRoll rlang Rsamtools S4Vectors scales SeuratObject stringi tidyr tidyselect vctrs]; }; SignacX = derive2 { name="SignacX"; version="2.2.5"; sha256="0b38k3lxca985mqwvbbdczkjnn2x79kga05yw995gb6d20cjh96v"; depends=[igraph jsonlite lme4 Matrix neuralnet pbmcapply RColorBrewer RJSONIO Seurat]; }; SignifReg = derive2 { name="SignifReg"; version="4.3"; sha256="1f57zbc7746jr2hfgri29whw5nb7w8h9nwk2p2n851b1rf7q0mgp"; depends=[car]; }; + SillyPutty = derive2 { name="SillyPutty"; version="0.3.2"; sha256="1mb35y5w5nhn9n1lgqa1nyjapn0bn8fwagc8lszkppj1lmkak7zv"; depends=[cluster oompaBase Polychrome Thresher]; }; Sim_DiffProc = derive2 { name="Sim.DiffProc"; version="4.8"; sha256="16pzcs1g5ihza9a2glnkgd5pxi77l6w34vkn0vxcb78gc6syhbrd"; depends=[Deriv MASS]; }; Sim_PLFN = derive2 { name="Sim.PLFN"; version="1.0"; sha256="1jmsydhpfv2z9cr99hfy8cairhkkxpwk4wnz1adixwxazkn7qfah"; depends=[DISTRIB FuzzyNumbers]; }; SimBIID = derive2 { name="SimBIID"; version="0.2.1"; sha256="01gkkgxx5x9pkwsmpmf1rg4i0ls7fl6yv6pcg8gscr51bnxsrwpp"; depends=[coda dplyr ggplot2 mvtnorm purrr RColorBrewer Rcpp RcppArmadillo RcppXPtrUtils tibble tidyr]; }; @@ -5144,15 +5238,15 @@ in with self; { SimCop = derive2 { name="SimCop"; version="0.7.0"; sha256="1yrdy77a9h14v92c63ng8phi2ig73wy4xjjdb75322grc0bd3jq6"; depends=[quadprog]; }; SimCorMultRes = derive2 { name="SimCorMultRes"; version="1.9.0"; sha256="061gnxvhii0hhnxd00hx9cpjmamcdvh10mcwjp43s09f5j4d564y"; depends=[evd]; }; SimCorrMix = derive2 { name="SimCorrMix"; version="0.1.1"; sha256="1mx8xkg1nbh4x4xr6m672zyg00s3lky2sy5mz7dfkw40vz2bwi53"; depends=[BB ggplot2 MASS Matrix mvtnorm nleqslv SimMultiCorrData triangle VGAM]; }; - SimDesign = derive2 { name="SimDesign"; version="2.13"; sha256="1wg6npbg1avgf948n2sw4q2q3022528rqfqzbjn67bayn7l8dfk6"; depends=[beepr dplyr foreach future future_apply pbapply progressr RPushbullet sessioninfo]; }; + SimDesign = derive2 { name="SimDesign"; version="2.14"; sha256="0jf1a5lfm0jd6k76jxq3pp8ngx10z44h6cgv4dhi59n4f95z7a82"; depends=[beepr dplyr foreach future future_apply pbapply progressr RPushbullet sessioninfo]; }; SimDissolution = derive2 { name="SimDissolution"; version="0.1.0"; sha256="1rdsxykh740h22ln635m0ysm00pdw94vp7qhgify4mcvc46c3632"; depends=[alabama dplyr mvtnorm]; }; SimEUCartelLaw = derive2 { name="SimEUCartelLaw"; version="1.0.3"; sha256="1n0dvhwqyirb6myc30ydvskb1k7hlx4nkqy15gpx87zl01vpn8fz"; depends=[plot3D]; }; - SimEngine = derive2 { name="SimEngine"; version="1.2.0"; sha256="1jga2iqdn0n9pym93addwhn3swn61dm1gh282isw2ssbqchh7arl"; depends=[data_table dplyr magrittr pbapply rlang]; }; + SimEngine = derive2 { name="SimEngine"; version="1.3.0"; sha256="0vijcdgm7lmwx4gq170965q4mrshpdwqffv1afmjrn1zrkxifnpi"; depends=[data_table dplyr magrittr pbapply rlang]; }; SimHaz = derive2 { name="SimHaz"; version="0.1"; sha256="04q4xyc1ki1zr3grm3khfg0kbykjy3j9qpg332l7pxp4j3wa3aw3"; depends=[survival]; }; - SimInf = derive2 { name="SimInf"; version="9.5.0"; sha256="07yavv1qaahxgkni5rrnhpzspkb6g185njiyh3aay4pfiyn5945l"; depends=[digest MASS Matrix]; }; - SimJoint = derive2 { name="SimJoint"; version="0.3.9"; sha256="1bv7r9mgkcr24azblpfi3fiyay7kflxhq4am46qy32pa1vsfyadf"; depends=[Rcpp RcppArmadillo RcppParallel]; }; + SimInf = derive2 { name="SimInf"; version="9.6.0"; sha256="1k89yml8z8ckk62lgpvb9r227vn39l9jkzzbxw34fm0ws09n77b2"; depends=[digest MASS Matrix]; }; + SimJoint = derive2 { name="SimJoint"; version="0.3.11"; sha256="1qs319v947ck63bcjyl9bimsj9ld2n6b9gxwq4llgdvlib5w5ryx"; depends=[Rcpp RcppArmadillo]; }; SimMultiCorrData = derive2 { name="SimMultiCorrData"; version="0.2.2"; sha256="0brszbqxf40y65xp96c5hp7hhvz3gv0xlg93r5ik8qdh0bn0y1sw"; depends=[BB GenOrd ggplot2 Matrix nleqslv psych triangle VGAM]; }; - SimRAD = derive2 { name="SimRAD"; version="0.96"; sha256="0ivvd3k04v1akbblxcjhlyc315z3ig7wjs0g3b37lvlfp54ppbrg"; depends=[Biostrings ShortRead zlibbioc]; }; + SimNPH = derive2 { name="SimNPH"; version="0.5.4"; sha256="14k5s0l1cq55mmbh4wdrg8q133qx66paqzj6vhyfdq9wl9kdwhl6"; depends=[car dplyr miniPCH nph nphRCT purrr rlang SimDesign stringr survival tibble tidyr]; }; SimRVPedigree = derive2 { name="SimRVPedigree"; version="0.4.4"; sha256="0z7wwwl814bwaijkmg9wcdj5xisiamc9yqypmk0hzj950569aj8p"; depends=[dplyr kinship2]; }; SimReg = derive2 { name="SimReg"; version="3.3"; sha256="1liwwbi3zqrcbqx5przdlzhnq7jvyjd6yhaxalhwggzf9zv7w8ci"; depends=[ontologyIndex ontologyPlot ontologySimilarity Rcpp]; }; SimSST = derive2 { name="SimSST"; version="0.0.5.2"; sha256="1c3bkcvq4767yabw7ifv3akhlavscgxwx5rp18c23icjd3pk9avx"; depends=[dplyr gamlss_dist MASS]; }; @@ -5168,12 +5262,10 @@ in with self; { SimplifyStats = derive2 { name="SimplifyStats"; version="2.0.4"; sha256="08775g6fdx09y8pkfq4k8zxbxpwah7yqq5cg30lmxl7zrpmza5hv"; depends=[assertthat broom dplyr moments tibble]; }; SimplyAgree = derive2 { name="SimplyAgree"; version="0.1.2"; sha256="0lcy2hjhni46z5m1zip77jlxl8jscq2rczfajdh1xwbpin484f9v"; depends=[boot dplyr emmeans ggplot2 insight jmvcore lme4 magrittr nlme patchwork purrr quantreg stringr tidyr tidyselect]; }; SingleCaseES = derive2 { name="SingleCaseES"; version="0.7.2"; sha256="0yp7h13g9lq9ym8jzxlzc0m2vmp63kvnmf7ysyxinjardigng6k7"; depends=[dplyr magrittr purrr rlang tidyr tidyselect]; }; - SiteAdapt = derive2 { name="SiteAdapt"; version="1.1.0"; sha256="1k79j29d92a8m578xj61iavljikksdmjr2vlzwmdvxpa6rp1i2ff"; depends=[ggplot2 ggpubr glmulti hyfo RColorBrewer solaR]; }; SitesInterest = derive2 { name="SitesInterest"; version="1.0"; sha256="06l6i6jnzwj683cvd9a9dg4nlb1wy1v3wb561y97a25bikm3mfy6"; depends=[plotrix]; }; SixSigma = derive2 { name="SixSigma"; version="0.11.1"; sha256="1gb6giq9rsgsrwrk0m8r2ay4hi1kqb009rsak33wvmvqsavka8lf"; depends=[e1071 ggplot2 lattice nortest reshape2 scales testthat xtable]; }; SizeEstimation = derive2 { name="SizeEstimation"; version="1.1.1"; sha256="1rz57y76hzp880511kzm7nhxf201n0dr7ccip6slrjz784dl7s27"; depends=[MCMCpack msm]; }; - SkewHyperbolic = derive2 { name="SkewHyperbolic"; version="0.4-0"; sha256="1blxibjrgb738q2ybavp4q3d6yn7hayhg851ysghp118wpl32nwr"; depends=[DistributionUtils GeneralizedHyperbolic]; }; - SkeweDF = derive2 { name="SkeweDF"; version="0.1.0"; sha256="11i6zbjhkcrr6g848sms21l1ixk401vd50cia74j78d4nvl8d8zc"; depends=[dplyr matrixStats optimr purrr Rcpp stringr zipfR]; }; + SkewHyperbolic = derive2 { name="SkewHyperbolic"; version="0.4-2"; sha256="0zhnw9qksm91v9cnlriaqlgr2pd855v6z75xpyqc0ms1qa5m8jp6"; depends=[DistributionUtils GeneralizedHyperbolic]; }; Skillings_Mack = derive2 { name="Skillings.Mack"; version="1.10"; sha256="0zxqiw87avw2rb2acj7mvpyfkf7iwnkshg73ib74y5ml9awmg2mw"; depends=[MASS matrixcalc]; }; SlaPMEG = derive2 { name="SlaPMEG"; version="1.0.1"; sha256="0ikhx14czcavfxppsaf0b6506l4gwhwk4p3wilr9zykw17s8ghzm"; depends=[ggplot2 globaltest lcmm lme4 magic mvtnorm reshape2]; }; SleepCycles = derive2 { name="SleepCycles"; version="1.1.4"; sha256="130r6wrsj4g725065zyxj0wzx1j10bh97288l4ckl4ka2kpawz8v"; depends=[ggplot2 plyr reshape2 stringr viridis]; }; @@ -5197,7 +5289,7 @@ in with self; { SoftClustering = derive2 { name="SoftClustering"; version="2.1.3"; sha256="0wnl3a0jnrhafkjj3yk0rij1ya0y4nxzix29mr5wpwgkhfyky8zy"; depends=[]; }; SoilHyP = derive2 { name="SoilHyP"; version="0.1.7"; sha256="0f4djzmbyz6x5av0d4ii972dw6295c4l3c7gbwp0yinpy3rgvh0q"; depends=[data_table lubridate]; }; SoilR = derive2 { name="SoilR"; version="1.2.107"; sha256="1j2p5rr8a62fsf77akksk8533ilcx8a7319wq4gjz680va8glp5h"; depends=[assertthat deSolve expm igraph purrr sets]; }; - SoilTaxonomy = derive2 { name="SoilTaxonomy"; version="0.2.3"; sha256="0gp9h32fikavxy6ds0vlc0fkb3gdrwvr1z5flpdmjqijjyr0frcc"; depends=[data_table stringr]; }; + SoilTaxonomy = derive2 { name="SoilTaxonomy"; version="0.2.4"; sha256="19rm7gmp6ya1fq1plmajjp8w8hf5q0j0va5flvpj39i2by3w3xrc"; depends=[data_table stringr]; }; SoilTesting = derive2 { name="SoilTesting"; version="0.1.0"; sha256="0l808ic9irz7m8i3rcr65mqq5x4a3mk481c7f1ihca2rca43pm2j"; depends=[]; }; Sojourn_Data = derive2 { name="Sojourn.Data"; version="0.3.0"; sha256="1flxiga9szhifndrhmf4blgms477gnnf4gd6wkxqgv3vgisc4q4i"; depends=[]; }; SolveSAPHE = derive2 { name="SolveSAPHE"; version="2.1.0"; sha256="1r42h19l186jry2wxmrp9y1jdcwr7wx4an3nmryc4l33f48idbfr"; depends=[]; }; @@ -5214,12 +5306,12 @@ in with self; { SpNMF = derive2 { name="SpNMF"; version="0.1.1"; sha256="1xybxx47i3ww5d7chwl38xc48fbsclgyxcki8h85c6dkm49dxy8i"; depends=[NMF]; }; SpPOP = derive2 { name="SpPOP"; version="0.1.0"; sha256="10s11sd8afridrkdg6q6wxqin0c214dl692sjz5f4ypv3irmwy04"; depends=[numbers qpdf]; }; SpTe2M = derive2 { name="SpTe2M"; version="1.0.3"; sha256="1xykmbgwwnvl7c9mf0aam3s55xmq2pxdy5wkkz9nzj1c74m0bxqf"; depends=[ggplot2 glmnet knitr mapproj maps MASS rmarkdown]; }; - SpaDES_core = derive2 { name="SpaDES.core"; version="2.0.2"; sha256="11symn8awz23fgzg2fnxkrznwq4arbd0zwjws0bdxbni58d8g2b7"; depends=[crayon data_table igraph lobstr qs quickPlot reproducible Require terra whisker]; }; - SpaDES_tools = derive2 { name="SpaDES.tools"; version="2.0.4"; sha256="03n6asn0f0s63aynwlwibpqnpl650l1blvcb8sfgl1ypp7gyxz3r"; depends=[backports checkmate data_table fpCompare Rcpp reproducible terra]; }; + SpaDES_core = derive2 { name="SpaDES.core"; version="2.0.3"; sha256="0lvs0jqlca4hcvn5d9f7ay4prqnk2lzddkq9gw295jm2plzk6a4l"; depends=[crayon data_table fs igraph lobstr qs quickPlot reproducible Require terra whisker]; }; + SpaDES_tools = derive2 { name="SpaDES.tools"; version="2.0.5"; sha256="0b598s3rblc3x97f7ikaf10xdy0v34h4dzv12l576ldmzpc9hjzq"; depends=[backports checkmate data_table fpCompare Rcpp reproducible terra]; }; SpaceTimeBSS = derive2 { name="SpaceTimeBSS"; version="0.3-0"; sha256="1mxaf1w4476j14dh9rd8z83y0vfysrzhvscmg93311dqv8iw22qw"; depends=[JADE Matrix Rcpp RcppArmadillo]; }; SpadeR = derive2 { name="SpadeR"; version="0.1.1"; sha256="0iy2rkq4vvps1a73kqq37zpsyl4pvl3vh07dwvpfhvp7f8nxbx99"; depends=[]; }; SparseBiplots = derive2 { name="SparseBiplots"; version="4.0.1"; sha256="0jiyafhsddqa3llrp62lf8bgcvs3wp2pxc8ppaxx4zphkifw2yhr"; depends=[ggplot2 ggrepel gtable rlang sparsepca testthat]; }; - SparseChol = derive2 { name="SparseChol"; version="0.2.1"; sha256="08ngq51rrrcdd8bd6xyf9vqhqrnqv90iasnlzcmynp7amc5s0avr"; depends=[Matrix Rcpp]; }; + SparseChol = derive2 { name="SparseChol"; version="0.3.1"; sha256="1gva9665mlr8g14l7g6z591yhz2j6xpf56bhqhm6is3dbhl2ga24"; depends=[Matrix Rcpp RcppEigen]; }; SparseDC = derive2 { name="SparseDC"; version="0.1.17"; sha256="0gsfj8631s67a0r9qjjll4rbb57nzk5fwm5bbggvf0027b9hk0pp"; depends=[]; }; SparseFactorAnalysis = derive2 { name="SparseFactorAnalysis"; version="1.0"; sha256="0lgfvydxb86r5hks1mf0p0yhgpx8s8fbkc3q6dimc728rw26qcv5"; depends=[directlabels ggplot2 MASS proto Rcpp RcppArmadillo truncnorm VGAM]; }; SparseFunClust = derive2 { name="SparseFunClust"; version="1.0.0"; sha256="1p3spmgg7plkh7ppc80gqpnl8c29wfnaa89d5z71qij02lwrcxyg"; depends=[cluster]; }; @@ -5229,18 +5321,21 @@ in with self; { SparseMDC = derive2 { name="SparseMDC"; version="0.99.5"; sha256="0d3ashk3l9fjdbiyjhaxc05ayyscissrg7lwhnh46hv3fydbixlj"; depends=[doParallel doRNG foreach]; }; SparseMSE = derive2 { name="SparseMSE"; version="2.0.1"; sha256="1alpvj0ya3r64wwfdzz2aaxgaf6512glzl65p97606c2fwrm6db7"; depends=[lpSolve Rcapture]; }; SparseTSCGM = derive2 { name="SparseTSCGM"; version="4.0"; sha256="01lfb3j907244hgapb85kba7zdmgzhw452gri208qgrjzfv2x9yh"; depends=[abind glasso huge longitudinal MASS mvtnorm network]; }; - SparseVFC = derive2 { name="SparseVFC"; version="0.1.1"; sha256="1g5i3r447f1zcrlcamfci1f96silqmm43dabm5yhhwzsj8ak6jpv"; depends=[pdist purrr]; }; - SpatEntropy = derive2 { name="SpatEntropy"; version="2.2-3"; sha256="03v322jkz41r0navlqxgdfp9v9c79cqb5rx743xa5xvlyw9wb8rv"; depends=[spatstat spatstat_geom spatstat_random]; }; + SparseVFC = derive2 { name="SparseVFC"; version="0.1.2"; sha256="0d4394jg5fk4cgpds014xl3dhf7wlx5i99bnxpj5xcbvfdqzvwvl"; depends=[pdist purrr]; }; + SpatEntropy = derive2 { name="SpatEntropy"; version="2.2-4"; sha256="0krcyymvwdcckiji1dlm9pyc2x82k5dfkvglfchv8w5kf6y2qmbh"; depends=[spatstat spatstat_geom spatstat_random]; }; + SpatGRID = derive2 { name="SpatGRID"; version="0.1.0"; sha256="10388v6fzykgxd35mvknrz92mvgby2vnsyw6jb2xi94fj21ybkp9"; depends=[qpdf raster sf sp]; }; + SpatMCA = derive2 { name="SpatMCA"; version="1.0.4"; sha256="051c6mdij04n7xc256qx0119gsg337w2xly3ykiy47nrd3svdvc3"; depends=[ggplot2 MASS Rcpp RcppArmadillo RcppParallel scales]; }; + SpatPCA = derive2 { name="SpatPCA"; version="1.3.5"; sha256="1lx429glr6273ssy1in192jx4iynqidkfmj9iibwiij3fk9y0sa5"; depends=[ggplot2 Rcpp RcppArmadillo RcppParallel]; }; SpatialAcc = derive2 { name="SpatialAcc"; version="0.1-4"; sha256="09rkzfzg6nh4n7dizkqrz651kp617l2557c9qpxacspl3ngbm82i"; depends=[sp]; }; SpatialBSS = derive2 { name="SpatialBSS"; version="0.14-0"; sha256="0z8k4wd5rlx3bmp4zmfvblkf4nrkkqqfcpv5wzncyhi2ffgnybvm"; depends=[distances JADE Rcpp RcppArmadillo robustbase sp SpatialNP]; }; - SpatialDDLS = derive2 { name="SpatialDDLS"; version="0.1.0"; sha256="00aan8pkgyay5bcqw2w2nx0jl7z7aqpja285lw34ff2gqy0bbwrh"; depends=[dplyr ggplot2 ggpubr grr gtools keras Matrix pbapply RColorBrewer reshape2 reticulate rlang S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment tensorflow tidyr zinbwave]; }; + SpatialDDLS = derive2 { name="SpatialDDLS"; version="1.0.0"; sha256="0mdkl3395hlfsqr5121l1hka089wxssa11v543idqyjhm30qjzg8"; depends=[dplyr FNN ggplot2 ggpubr grr gtools keras Matrix pbapply reshape2 reticulate rlang S4Vectors scran scuttle SingleCellExperiment SpatialExperiment SummarizedExperiment tensorflow zinbwave]; }; SpatialEpi = derive2 { name="SpatialEpi"; version="1.2.8"; sha256="0q14scafm31xansk5zkhk6hb5jqcmi519jsd4drwkfvvdk8hf93d"; depends=[MASS Rcpp RcppArmadillo sp spdep]; }; SpatialExtremes = derive2 { name="SpatialExtremes"; version="2.1-0"; sha256="0z1swxp1syz8hdskarjxx4sdd7wx835kcnb783bwqm235yh991j3"; depends=[fields maps]; }; SpatialGEV = derive2 { name="SpatialGEV"; version="1.0.0"; sha256="0g4v84a4c14a2vf7y055j9jgcki7q4182lmmmphrahiqwnjxhm1b"; depends=[evd mvtnorm TMB]; }; SpatialGraph = derive2 { name="SpatialGraph"; version="1.0-4"; sha256="1875vi3dm6jm7bfmc9ydn4aaygls0c0k5pk540qq2f3ywbfq10zd"; depends=[igraph pracma sf shape sp splancs]; }; SpatialKDE = derive2 { name="SpatialKDE"; version="0.8.2"; sha256="15s72mjz3pqny5i2c6xg5k4dzwb6d00zg8gihik91f8j06fy9w6r"; depends=[cpp11 dplyr glue magrittr progress raster rlang sf vctrs]; }; SpatialKWD = derive2 { name="SpatialKWD"; version="0.4.1"; sha256="0b5vfsmpl3zxcwsg7bj85kfbyv8a2bgfq72b3rk4r6ms7ngc5i16"; depends=[Rcpp]; }; - SpatialML = derive2 { name="SpatialML"; version="0.1.5"; sha256="13didlxl9fn5h48fyz29f2vh3vi8g2fisbnaraqlgwn5fbsg3ihd"; depends=[caret ranger]; }; + SpatialML = derive2 { name="SpatialML"; version="0.1.6"; sha256="133iwzbxy8ix2kfa1w6ic6sfip2jkrkw22h3acvh55fcwia7pk08"; depends=[caret randomForest ranger]; }; SpatialNP = derive2 { name="SpatialNP"; version="1.1-5"; sha256="0cxh1f4182mfihq6m82zh2lgafrsiqvgrfxbk66zkjrrbfn8gkcl"; depends=[]; }; SpatialPOP = derive2 { name="SpatialPOP"; version="0.1.0"; sha256="0pgd4injkimjp6pid42arhfbavx2i8crkdvqr35bjvf26p7hbvv3"; depends=[MASS numbers qpdf]; }; SpatialPack = derive2 { name="SpatialPack"; version="0.4"; sha256="138q209gyggpfa1ha1yc6czpv0lxp6acggvp4yc4nbcnkxnvqzwb"; depends=[fastmatrix]; }; @@ -5259,6 +5354,7 @@ in with self; { SpecsVerification = derive2 { name="SpecsVerification"; version="0.5-3"; sha256="1v76lilyj65f04881yw19v0qi7n08ysdnr7sc4hf5d8wnmvdh3v3"; depends=[Rcpp RcppArmadillo]; }; SpectralClMixed = derive2 { name="SpectralClMixed"; version="1.0.1"; sha256="10nx03kr35irvvink8kfx6gbv90wnlsx514r7921hrjvcjiqn82s"; depends=[cluster GGally ggplot2 RSpectra]; }; SpectralMap = derive2 { name="SpectralMap"; version="1.0"; sha256="15689023k9jzg3s7bx5m97dmn00z876amqhxsxksy8n8wf09wr57"; depends=[fields scatterplot3d]; }; + Spectran = derive2 { name="Spectran"; version="1.0.3"; sha256="1ylw4klxvklrgpanp4lz4q6kvrg0n51xrnxz0nw1s782ag1c5ndg"; depends=[chromote colorSpec cowplot dplyr gghighlight ggplot2 ggrepel ggridges ggtext gt htmltools magrittr openxlsx pagedown patchwork png purrr readr rlang scales shiny shinyalert shinydashboard shinyFeedback shinyjs shinyWidgets spacesXYZ spsComps stringr tibble tidyr tidyselect waiter webshot2 withr]; }; Spectrum = derive2 { name="Spectrum"; version="1.1"; sha256="0n38d360azkck6vvhr771zsh0gbvd9qsf9ygg5r18vhz0pb1xcfw"; depends=[ClusterR diptest ggplot2 Rfast]; }; SphereOptimize = derive2 { name="SphereOptimize"; version="0.1.1"; sha256="1b01jpj0sagi3hwfvgd346wvrcypv5b3hh0xfdd8qqnwjgkq8ixi"; depends=[]; }; SphericalCubature = derive2 { name="SphericalCubature"; version="1.5"; sha256="03j9f9v3zrykrd4lc74i19s3xyc0z3l2kg3056qg591sxw64h7vh"; depends=[abind cubature mvmesh SimplicialCubature]; }; @@ -5292,7 +5388,8 @@ in with self; { StatPerMeCo = derive2 { name="StatPerMeCo"; version="0.1.0"; sha256="1nm6brlj6h7jx8nqagrfk294ay3pfmkiizabwlb87qfnsfwchpk3"; depends=[]; }; StatRank = derive2 { name="StatRank"; version="0.0.6"; sha256="14d8v3bp8vgksi6q0mxajwd9s8zi6lns3qwi1vcr5xp9rjp4n6iy"; depends=[ggplot2 plyr truncdist]; }; StatTeacherAssistant = derive2 { name="StatTeacherAssistant"; version="0.0.1"; sha256="0n9na9mzjzcgkq97ix1v3dxhzbc6c9s8g3rm4ikwsa2j4asrfbrd"; depends=[DescTools dplyr DT ggplot2 plotly rhandsontable rio rmatio shiny shinyalert shinyBS shinyjs sortable stringi stringr teachingApps tidyr]; }; - Statamarkdown = derive2 { name="Statamarkdown"; version="0.8.0"; sha256="0rick3fp8dpnq2i72pyhln1kxr6050vxlqpiji4f3348g72c2j0b"; depends=[knitr xfun]; }; + Statamarkdown = derive2 { name="Statamarkdown"; version="0.9.2"; sha256="1ir2qh492q0rn6rwnmvj2cxqsssmsd5hm9vlyg0r7dk22grh19z0"; depends=[knitr xfun]; }; + StateLevelForest = derive2 { name="StateLevelForest"; version="0.1.0"; sha256="1y4y8idp6vq1108bs95h1xd2r8gja3ap56r31hnbi3ckyrhw46al"; depends=[]; }; Statsomat = derive2 { name="Statsomat"; version="1.1.0"; sha256="1lfgbbf1pcfbih5nfb6rbiq2h0hlxg1fzmcf4330yc48r998q4x6"; depends=[car corrplot data_table DDoutlier energy ggplot2 gridExtra kableExtra knitr readr reshape2 rmarkdown shiny shinydisconnect]; }; SteinIV = derive2 { name="SteinIV"; version="0.1-1"; sha256="1bm4lc7g9h9jkb1dpzb84289bwxcywp0a8vylv6ipvhiqbqk5d95"; depends=[]; }; SteinerNet = derive2 { name="SteinerNet"; version="3.1.0"; sha256="03wr746dkwp8vg91y986q0xvgz1y9b5q25g0kig2sx6m75li3yif"; depends=[igraph]; }; @@ -5309,6 +5406,7 @@ in with self; { StochBlock = derive2 { name="StochBlock"; version="0.1.2"; sha256="0g0l36imgw3bvqj5g45abwicswcyqprzbkas9pzgha8dsc5s12w3"; depends=[blockmodeling doParallel doRNG foreach Rcpp RcppArmadillo]; }; StockDistFit = derive2 { name="StockDistFit"; version="1.0.0"; sha256="02af493w8mhkqpwa1h2wvga19rz22b09z2j69yn8r74jfdfj08wz"; depends=[dplyr fBasics fGarch fitdistrplus ghyp magrittr quantmod xts zoo]; }; Storm = derive2 { name="Storm"; version="1.2"; sha256="1fg8y9my9yp6px1gh43mr3m2s2z262mzq03pj52mqg3n186vk8z3"; depends=[permute rjson]; }; + StormR = derive2 { name="StormR"; version="0.1.1"; sha256="02pxdalkls5qyhms0micjx3w4vvqisv4rc4h7dmyszmacki4kn49"; depends=[maps ncdf4 rworldmap sf stringr terra zoo]; }; StrainRanking = derive2 { name="StrainRanking"; version="1.2"; sha256="1r8avm9xajqmsy4x7pgh1yaffq7wl5i5kg75kdilydwmii6n19i0"; depends=[]; }; StratSel = derive2 { name="StratSel"; version="1.3"; sha256="0hd6q8s8aiymcd33kv0gd0a4wzr86xxdzwn18jgpyk9q8pmg8gvl"; depends=[Formula MASS memisc mnormt pbivnorm]; }; Strategy = derive2 { name="Strategy"; version="1.0.1"; sha256="0phja1r0qfvcswvw5w1x6ny86p84wkqb029fdqgw10djdm9xp0f2"; depends=[xts zoo]; }; @@ -5330,7 +5428,6 @@ in with self; { SubTS = derive2 { name="SubTS"; version="1.0"; sha256="0vd3pb7y341rki0yjnvmzdlq49sk481g79k82pvryavfk7485hid"; depends=[copula gsl tweedie]; }; SubTite = derive2 { name="SubTite"; version="4.0.5"; sha256="13fh24w7nvx5xqb0yvn8cackj576dspnrszdqv1gd0i3irzlyqya"; depends=[Rcpp RcppArmadillo]; }; SubVis = derive2 { name="SubVis"; version="2.0.2"; sha256="1nb3zgm6i5lwfwdrn8mk3wkg8a4ldfvs27ai8v46l4316qc1fa9p"; depends=[Biostrings shiny]; }; - SubgrPlots = derive2 { name="SubgrPlots"; version="0.1.3"; sha256="1bi5zndkpgvyk563i0jdfrw73kkpa6zi3yx922dv90w6bdb9kvl2"; depends=[alluvial circlize colorspace diagram dplyr ggplot2 ggrepel gridBase gridExtra plyr polyclip scales shape sp survival survRM2 UpSetR VennDiagram]; }; SubpathwayLNCE = derive2 { name="SubpathwayLNCE"; version="1.0"; sha256="051csjavr9549y54yirfdn266i7swsvpbcakhziyz4sl4afwx5kl"; depends=[BiasedUrn graph igraph RBGL]; }; SubtypeDrug = derive2 { name="SubtypeDrug"; version="0.1.5"; sha256="1f1kx5lw2f1pch3805p58r89mkckcwna6vihagjrdcdc9xln48vb"; depends=[BiocGenerics ChemmineR GSVA igraph pheatmap rvest xml2]; }; SuessR = derive2 { name="SuessR"; version="0.1.5"; sha256="1rh792x7dyfnhnw6g0f6hb5wqw58j6j11k9xib11ba256qrnvwgc"; depends=[]; }; @@ -5354,15 +5451,17 @@ in with self; { SurvCorr = derive2 { name="SurvCorr"; version="1.1"; sha256="0pccjc9zdvbb869wfywm23l63h1bpi5px4q5x7fq54pm0iyi1k73"; depends=[fields survival]; }; SurvDisc = derive2 { name="SurvDisc"; version="0.1.1"; sha256="0ajvnm0a4krbm0m584bg58hd7dzl0f2rz5as1zsajx8agywb5qmv"; depends=[cubature MASS mvtnorm nlme simex survival]; }; SurvHiDim = derive2 { name="SurvHiDim"; version="0.1.1"; sha256="1kix00zfrbx11pwx2dfag8vz5nvf8siw2kbxi8g4fb7xib9wh2na"; depends=[factoextra glmnet igraph Rdpack readr survival tidyverse useful]; }; - SurvLong = derive2 { name="SurvLong"; version="1.3"; sha256="07qxiym9vkv7wgmjs44jc6662yipb8ry6n9b90n4lwj5vasmn0x6"; depends=[]; }; + SurvLong = derive2 { name="SurvLong"; version="1.4"; sha256="004s62c5w4lrp55g883iz8plviaij86m5wiaxcmqxaf5709sbk9g"; depends=[]; }; SurvMI = derive2 { name="SurvMI"; version="0.1.0"; sha256="0qgsgz11vz73v83bkxrrjwk7i26rllkxk97if3nw2rgl9jnmiih0"; depends=[survival zoo]; }; SurvMetrics = derive2 { name="SurvMetrics"; version="0.5.0"; sha256="14hpvqg0k3ww5qla4s08nrqwcy27y76kfp7b0g1hzs3vv046fb7i"; depends=[MASS pec randomForestSRC survival survminer]; }; SurvRegCensCov = derive2 { name="SurvRegCensCov"; version="1.7"; sha256="02bg0iaqh98gwbzl24dy4piyxfqb3fmn2yc0pkd7y5ygchpfm4ak"; depends=[numDeriv survival]; }; + SurvSparse = derive2 { name="SurvSparse"; version="0.1"; sha256="14v0319w2k6b5cmpfrcxc2h3558lrpf101mhbpkqy0k4ahsb0sax"; depends=[dplyr foreach gaussquad MASS nleqslv nloptr purrr tibble tidyr]; }; SurvTrunc = derive2 { name="SurvTrunc"; version="0.2.0"; sha256="0zkjlndmg0rc7ycqy2v42nyzs4sd9z1y9y9kwfdci9qrc88nnfmn"; depends=[survival]; }; - SurveyCC = derive2 { name="SurveyCC"; version="0.1.0"; sha256="0k6ac7c1x4ppwrsv9icx5fw8y0vaw264f0h9ni4m5i4dix90ss79"; depends=[candisc survey]; }; + SurveyCC = derive2 { name="SurveyCC"; version="0.1.1"; sha256="1jhgc6alrpib0qhnh2l9zp9nvy8vfgi2y4dy26vh92rqhdym19ss"; depends=[candisc survey]; }; SurvivalClusteringTree = derive2 { name="SurvivalClusteringTree"; version="1.0"; sha256="1h5iwwlw1gh82laargp7pwpspc7jljzizpyv251gsgdjrms72p79"; depends=[dplyr formula_tools gridtext Rcpp RcppArmadillo survival]; }; SvyNom = derive2 { name="SvyNom"; version="1.2"; sha256="0s9gn10v6a8n6898g0gmdrw51z7y98klji59sn06dfbsxlswlv11"; depends=[Hmisc rms survey survival]; }; SwarmSVM = derive2 { name="SwarmSVM"; version="0.1-7"; sha256="03q9sv51lvf64gdzmcb8sskghqib3afy5hx9nwxba1sk2cziinpb"; depends=[BBmisc checkmate e1071 kernlab LiblineaR Matrix SparseM]; }; + SweepDiscovery = derive2 { name="SweepDiscovery"; version="0.1.1"; sha256="1302bhkbgb898jjjpmn4gvfj3qid54bbk24d41ssz55cbyaqsimm"; depends=[randomForest]; }; SwimmeR = derive2 { name="SwimmeR"; version="0.14.2"; sha256="17ri50k88absi7ijj1w478aahl9hx1ajq16gk9807m9q83pq25yg"; depends=[dplyr magrittr pdftools purrr readr rvest stringr xml2]; }; SwissAir = derive2 { name="SwissAir"; version="1.1.5"; sha256="0lh69924vhyilgn562jqn8m7z4dq3xmdj09501sbs7hbxfaiiyly"; depends=[]; }; SyScSelection = derive2 { name="SyScSelection"; version="1.0.2"; sha256="16zx507hlzhdxbh6gzndbgmzpyp6vc59h441l4gv8lx58zi9kyjd"; depends=[pracma]; }; @@ -5397,11 +5496,10 @@ in with self; { TCIU = derive2 { name="TCIU"; version="1.2.4"; sha256="0is0y0123pvwvkwzghd58chbiy1862qy8q3377j1nj1k81whj0cn"; depends=[cubature doParallel dplyr DT extraDistr fancycut fmri foreach forecast geometry ggplot2 ggpubr gridExtra ICSNP MultiwayRegression plotly pracma RColorBrewer reshape2 rrcov scales spatstat_explore spatstat_geom tidyr zoo]; }; TDA = derive2 { name="TDA"; version="1.9"; sha256="0gk058mbbywdpmjif3zl0g4a4sn3jr5bxksmqwhk3h881rsjic6h"; depends=[BH FNN igraph Rcpp RcppEigen scales]; }; TDAkit = derive2 { name="TDAkit"; version="0.1.2"; sha256="1gvcv3016kjk98qm07i972fi66bcljj1avmagyc8qxs29cq3ngg3"; depends=[energy ggplot2 maotai Rcpp RcppArmadillo Rdpack T4cluster TDAstats]; }; - TDApplied = derive2 { name="TDApplied"; version="2.0.4"; sha256="0bq06pzw7w4qp8cqvkxqqhx2qyn03vz7zxsk3f1ykjv846qxf6bb"; depends=[clue doParallel foreach iterators kernlab parallelly rdist]; }; TDAstats = derive2 { name="TDAstats"; version="0.4.1"; sha256="1zmickqk60vm9rzy67hib835v3c45aqjk441p31vpbvhbiy58nq5"; depends=[ggplot2 Rcpp]; }; TDAvec = derive2 { name="TDAvec"; version="0.1.3"; sha256="0g449p1y16sl35md9c4qnj3n7i5nx9appqx22d7ijjhr7zpv0p1s"; depends=[microbenchmark Rcpp TDA]; }; TDCor = derive2 { name="TDCor"; version="0.1-2"; sha256="18085prcwhl5w717f1f7jcqskw2jvigvjjs2l5y6106ibiam6hxx"; depends=[deSolve]; }; - TDLM = derive2 { name="TDLM"; version="0.1.0"; sha256="16xjmg7k7zqvc56l12971wz66sdzpr4gys5xp0srvs5hp8pr8a2d"; depends=[Ecume mathjaxr Rdpack readr rmarkdown sf]; }; + TDLM = derive2 { name="TDLM"; version="1.0.0"; sha256="05gjbmhnamm94facg590sd1m7l3x51crd7x21ly6gmwyq5rjlffm"; depends=[Ecume mathjaxr Rdpack readr rmarkdown sf]; }; TDPanalysis = derive2 { name="TDPanalysis"; version="1.0"; sha256="0kvbsgwl7b9a3hn4d3snajqmynbajd2d8lc1na0hri2cv8qm8x9h"; depends=[plyr]; }; TDbook = derive2 { name="TDbook"; version="0.0.6"; sha256="127bvwy65fr0nm7gw4mqcjm6dfrvlnl77z4ig2bpfxy7a0xq67gp"; depends=[]; }; TDboost = derive2 { name="TDboost"; version="1.4"; sha256="0kbmn1bddsnmh20rnkw6gizpb23srb4id3dsqqrjgj15j4zkavas"; depends=[lattice]; }; @@ -5418,15 +5516,16 @@ in with self; { TGS = derive2 { name="TGS"; version="1.0.1"; sha256="01mwdlgfjlxy0q5lxcmzk6lsb806987va7yag0zpjjd2bzmdh70k"; depends=[bnstruct doParallel foreach ggm minet rjson]; }; TGST = derive2 { name="TGST"; version="1.0"; sha256="1xnb41ksggdi57gnkjaab98c4nfdkxqx53rv9pyh3j0cg0kbkk9v"; depends=[ggplot2 knitr]; }; TH_data = derive2 { name="TH.data"; version="1.1-2"; sha256="0wyyvm6l6yvqvfnd1c4l9ff5445zaq9lr0ihz8pg9kkggfslxya7"; depends=[MASS survival]; }; + THREC = derive2 { name="THREC"; version="1.0.0"; sha256="0pdwjjsfqqbkfl21qiikcgl9psb9x2fh5qg7wi6x1kq906zzify7"; depends=[Deriv dplyr magic Matrix tidyr]; }; TIGERr = derive2 { name="TIGERr"; version="1.0.0"; sha256="04nnm0adf0sbgv7a2ikaq2a5kb9j1xmdfmssizm49q5j457rrl7d"; depends=[pbapply ppcor randomForest]; }; TIMP = derive2 { name="TIMP"; version="1.13.6"; sha256="1if2qm40nlz54pylqvdp4pk2jmicn8wkdlywrkr5hn80c0yyy879"; depends=[colorspace deSolve fields gclus gplots minpack_lm nnls]; }; - TITAN2 = derive2 { name="TITAN2"; version="2.4.2"; sha256="0g7iklmc8hlx0iv6n7z5hdhzmayndix2lr2y7n8c5dnahh19rl4c"; depends=[cowplot dplyr ggplot2 ggridges glue purrr tibble]; }; - TITEgBOIN = derive2 { name="TITEgBOIN"; version="0.2.1"; sha256="0n47lfpnbqirny0lbs3hl3sgd2l6i4wn2xfx1r8nlbnv6s140fzv"; depends=[]; }; + TITAN2 = derive2 { name="TITAN2"; version="2.4.3"; sha256="0lnkgfa3dq38ad0rpyzwq12kv4vb19wzx17sw8f1vfzpkgf5v4qa"; depends=[cli cowplot dplyr ggplot2 ggridges glue purrr tibble]; }; + TITEgBOIN = derive2 { name="TITEgBOIN"; version="0.3.0"; sha256="088gc9i5zv6bysbrsmw7y6if6kgj0gz70dmsn2zj1053mq14pnkj"; depends=[]; }; TKCat = derive2 { name="TKCat"; version="1.0.7"; sha256="0j3m10adfc3k7znaissl1w6pqg5mf2qhl4r2i89qjdmw0i1h27pa"; depends=[base64enc ClickHouseHTTP DBI dplyr DT future getPass htmltools jsonlite jsonvalidate magrittr markdown Matrix promises readr ReDaMoR rlang shiny shinydashboard tidyselect uuid visNetwork xml2]; }; TLMoments = derive2 { name="TLMoments"; version="0.7.5.3"; sha256="096sr0j4vhlfsaxc565zgw0mjk4sxkl03i7ip3hzcfph1c05yj6h"; depends=[ggplot2 hypergeo lmomco Rcpp]; }; - TMB = derive2 { name="TMB"; version="1.9.6"; sha256="1sh3arsj42gimgpva76p4dd969iwqw3n5wkzn487kl7vk5phdnh0"; depends=[Matrix RcppEigen]; }; + TMB = derive2 { name="TMB"; version="1.9.10"; sha256="1cc34zxn2x88fbh4clgbzia36800i30pdlywbkwc26zm50nsxpwi"; depends=[Matrix RcppEigen]; }; TMDb = derive2 { name="TMDb"; version="1.1"; sha256="062n9mi2f9g2xxpnymja57xnpl855d8mwyfwci7a8cq4c7w7avj7"; depends=[httr jsonlite stringi]; }; - TML = derive2 { name="TML"; version="1.1.0"; sha256="0yaqf000dgki3vb3gyr5zzmvnshspliawv8wap21y4iarrv15pl6"; depends=[ape cluster combinat gtools lpSolve lpSolveAPI magick maps MASS Matrix miscTools phangorn phytools rcdd RcppAlgos Rfast rgl ROCR stringr]; }; + TML = derive2 { name="TML"; version="1.2.0"; sha256="0krnh14mi3vi4msiz84f56kmzq12b1qc246jny37isl1b2wz2zrp"; depends=[ape cluster combinat gtools lpSolve lpSolveAPI magick maps MASS Matrix miscTools phangorn phytools rcdd RcppAlgos Rfast rgl ROCR stringr]; }; TMTI = derive2 { name="TMTI"; version="1.0.1"; sha256="080k4lmwspxi6salv4zq9lipwcah3zr6vfc0lrll1z8gynk8arq9"; depends=[Rcpp]; }; TNC = derive2 { name="TNC"; version="0.1.0"; sha256="0639wvylmk9mapvmz79ij65g1phv3ylc683awi4pgaf9yfwlmjkn"; depends=[]; }; TNRS = derive2 { name="TNRS"; version="0.3.4"; sha256="16w1jga1f6fb8fpwrgrvsghwp4fzb0n81vwnsr6x0nrm185a918a"; depends=[httr jsonlite]; }; @@ -5438,12 +5537,14 @@ in with self; { TOU = derive2 { name="TOU"; version="0.1.0"; sha256="0wia39yj7abnicx4xhaq1g69qx5fmzh6gywyl5yqfmw03azmyl55"; depends=[DEoptim ggplot2 Rdpack]; }; TOmicsVis = derive2 { name="TOmicsVis"; version="2.0.0"; sha256="0s46i8wnvvs15xwb0g62rpn864b27hbx0lrjpcv2wb1s27iz1wv3"; depends=[Biobase circlize clusterProfiler ComplexHeatmap cowplot dplyr e1071 EnhancedVolcano enrichplot factoextra GGally ggcorrplot ggforce ggnewscale ggplot2 ggplotify ggpolypath ggpubr ggrepel ggsci igraph Mfuzz pheatmap plotrix randomcoloR RColorBrewer reshape2 Rtsne shiny stringr survival survminer tidyr umap UpSetR vegan venn WGCNA]; }; TP_idm = derive2 { name="TP.idm"; version="1.5.1"; sha256="0w8sgzm5bmv9m16dryxpw51q000mfmbipxqnhb26bkzr6y46bd79"; depends=[]; }; + TPAC = derive2 { name="TPAC"; version="0.2.0"; sha256="1k3nd3yrv1kxidjwaff4q9aqf7yqqwa6946a154y2h3k21kfmwcc"; depends=[data_table MASS TPACData]; }; + TPACData = derive2 { name="TPACData"; version="0.1.0"; sha256="0csx3d2sgw350ar5ky7hdzvcn7mlfwn67khxfb6xkwxqdiva282j"; depends=[data_table]; }; TPCselect = derive2 { name="TPCselect"; version="0.8.3"; sha256="1x3db852zp3c12aihwbaak4i0dwjyl4sfv5snn7ap3gj3lydlznp"; depends=[corpcor KernSmooth MASS psych]; }; TPD = derive2 { name="TPD"; version="1.1.0"; sha256="1ppj6ppi0lhlz079ygjnwx1l5f36bsi8zax23ssr1w6h4csw748m"; depends=[ggplot2 gridExtra ks mvtnorm]; }; TPEA = derive2 { name="TPEA"; version="3.1.0"; sha256="1yyc3q4dyf4d8m7wi851dnxf3xnvvfnvj28kl8z8py4r4jsb2hfy"; depends=[foreach igraph Matrix MESS RCurl XML]; }; TPES = derive2 { name="TPES"; version="1.0.0"; sha256="00g1limcappjrly93x7xb1llrgaxivmiky3kw40w2fs0303ha3d7"; depends=[]; }; TPLSr = derive2 { name="TPLSr"; version="1.0.4"; sha256="0y5m8w82d949zsm576nbqllw2h87wa9fvk65br7w2f74h2rrwz5v"; depends=[plotly]; }; - TPmsm = derive2 { name="TPmsm"; version="1.2.7"; sha256="0xh1cmnwn7agd607ns1fdfz7gggms6jmy6ndb1r9icgbiqhy1z5d"; depends=[KernSmooth]; }; + TPmsm = derive2 { name="TPmsm"; version="1.2.12"; sha256="1s3rcz2bxngpi47ils3z5v5drv66k10mnvzhifj47b5671w1rb6k"; depends=[KernSmooth]; }; TR8 = derive2 { name="TR8"; version="0.9.22"; sha256="12miq65yl39pngpsa30qjcwp21vn93a4wvid03pmbf6x6hq0v4k7"; depends=[dplyr plyr rappdirs RCurl readxl reshape shiny taxize XML]; }; TRADER = derive2 { name="TRADER"; version="1.2-3"; sha256="1w9m2b866dyj82s118m64q8j9a1chpq2km2pnn9mfwwj8sivgdgn"; depends=[dplR]; }; TRAMPR = derive2 { name="TRAMPR"; version="1.0-10"; sha256="0nndacpj1bnj6klvf8z4hl05krlnmyc9h9f813kmypk5fqjnhh38"; depends=[]; }; @@ -5467,6 +5568,7 @@ in with self; { TSGSIS = derive2 { name="TSGSIS"; version="0.1"; sha256="0zrlin6xi6sv5qb18a0wi8lzldqlwa9lbwnra44w3jza3kakff7n"; depends=[glmnet MASS]; }; TSHRC = derive2 { name="TSHRC"; version="0.1-6"; sha256="13x5l0y0nh972p39s32dv8byds19g8265s2mphbrzz1v59aq0xk3"; depends=[]; }; TSLSTM = derive2 { name="TSLSTM"; version="0.1.0"; sha256="0q00h8hf5xdwvpw1z7f2zxsbwynby1qdzbafdlsrxi0l51mz5r76"; depends=[keras tensorflow tsutils]; }; + TSLSTMplus = derive2 { name="TSLSTMplus"; version="1.0.1"; sha256="1ap6k5zd1nh92s99k073jgmd9rxhz185m0cnz1wc2hrcpfgzqdg9"; depends=[keras tensorflow tsutils]; }; TSMN = derive2 { name="TSMN"; version="1.0.0"; sha256="12wgcc7szbcbk3d1a17wz96rlwp5l39cn0i03hjsb0sbrs7mjwg5"; depends=[]; }; TSMSN = derive2 { name="TSMSN"; version="0.0.1"; sha256="0zy9r6i1p161h1zh0vnz1npsh48q3nc2c5hcgzvf78nfznnn6wg1"; depends=[mvtnorm numDeriv progress sn]; }; TSP = derive2 { name="TSP"; version="1.2-4"; sha256="1263ay3dar2mzm89nf31gl7n8d983qjiy4qwz7sgv8vwkbz0pg9h"; depends=[foreach]; }; @@ -5487,7 +5589,7 @@ in with self; { TT = derive2 { name="TT"; version="0.98"; sha256="0vnj2lmhn8qk3p8m8kvamp1af71iw3l75ds0mm9c8vinw2z4fzg3"; depends=[data_tree dplyr DT htmlwidgets magrittr purrr]; }; TTAinterfaceTrendAnalysis = derive2 { name="TTAinterfaceTrendAnalysis"; version="1.5.9"; sha256="1gc162j8pm0qfhlwfyg8hdp8wqni9qn0jq6vh6ip7wh6h490hg4x"; depends=[data_table e1071 multcomp mvtnorm nlme pastecs relimp reshape rkt stlplus tcltk2 zoo]; }; TTCA = derive2 { name="TTCA"; version="0.1.1"; sha256="16slr4c2nwbchsg6fk5prq22p2v4cjxzk93wd3xggav2lzrf8a5h"; depends=[MASS Matrix quantreg RISmed tcltk2 VennDiagram]; }; - TTR = derive2 { name="TTR"; version="0.24.3"; sha256="11xsmbvmxq2j119j2z58bx1fkkb2xlhmzc35z5fbwr3nchrfz6jd"; depends=[curl xts zoo]; }; + TTR = derive2 { name="TTR"; version="0.24.4"; sha256="1102f4i776asqb281mq20ymhzhcp12gn9nr3rm0jzblv6nf2nww9"; depends=[curl xts zoo]; }; TTS = derive2 { name="TTS"; version="1.1"; sha256="0b9zlvsjdblc7yavpm9ni0av5z40xlwvn5v37dg3kd6ymjykir1k"; depends=[mgcv sfsmisc]; }; TUFLOWR = derive2 { name="TUFLOWR"; version="0.1.1"; sha256="0z2fr8br7afy8sn0mn0cxpw39rcm5k7zb2gci9brl6c5ss5n2qsn"; depends=[dplyr ggplot2 gstat lubridate magrittr raster readr rlang sf sp stringr tibble tidyr]; }; TULIP = derive2 { name="TULIP"; version="1.0.2"; sha256="16jf6ybwrhc4ckajdzpswilzn09agqz7mxg9a93gxkqvc2rwh5br"; depends=[glmnet MASS Matrix tensr]; }; @@ -5498,7 +5600,7 @@ in with self; { TableHC = derive2 { name="TableHC"; version="0.1.2"; sha256="1il86xjc4h1sdq3gpi4s7xbkcgzpgfqy5ivzjdkbq45d06pssk21"; depends=[]; }; TableMonster = derive2 { name="TableMonster"; version="1.7"; sha256="1xa4bkcpzhm50dwbpya346swjjfw46n2x26xm30p8gppilg5c0lb"; depends=[xtable]; }; TableToLongForm = derive2 { name="TableToLongForm"; version="1.3.2"; sha256="034vca0il7006zdkh5vdfjddyq9lg5mkl8hjria2rpks6wx0jhrd"; depends=[]; }; - TailClassifier = derive2 { name="TailClassifier"; version="0.1.0"; sha256="1m9a2x837v6s7gsv8g5ll6s2h1lk0jjfig2qvkqzg97xp7v9b8in"; depends=[readr]; }; + TailClassifier = derive2 { name="TailClassifier"; version="0.1.1"; sha256="10hf6lhc8vpx4bkyzgiyawgv0qgbkwdfgjjn3l7rx4vl24g3jlxy"; depends=[cowplot ggplot2 scales]; }; TailRank = derive2 { name="TailRank"; version="3.2.2"; sha256="02cxfdrc2pncw7pivg00414rzy27jp57pbg2ibq5a4fj8zm9bv91"; depends=[Biobase oompaBase oompaData]; }; TangPoemR = derive2 { name="TangPoemR"; version="0.1.0"; sha256="06w5gg36mx0vdagkhy7rskgjv2d3irr0d3nkjw26vxp25x1py4sf"; depends=[jiebaR]; }; TangledFeatures = derive2 { name="TangledFeatures"; version="0.1.1"; sha256="1jkhnl6y9jwxcj8njx2m8lax2z15ma6rk0bci871n4y6bp4bk4zn"; depends=[correlation data_table dplyr fastDummies ggplot2 igraph janitor Matrix purrr ranger]; }; @@ -5506,18 +5608,19 @@ in with self; { TapeS = derive2 { name="TapeS"; version="0.12.1"; sha256="1f6g8hz4bj7192kh5s7a1vc6kh4niw4pw3d259mwfklmkbc26m4f"; depends=[Rcpp RcppArmadillo TapeR]; }; Tariff = derive2 { name="Tariff"; version="1.0.5"; sha256="1mdbc6yyaddkyj617kx93d2737gijh063v8w8jqw4lwmbwyc4a4w"; depends=[]; }; TauStar = derive2 { name="TauStar"; version="1.1.4"; sha256="06bb6570mqzfbjw2qp4bjl4a1bdpwsvcr0vw2y4l1x444m670ds1"; depends=[Rcpp RcppArmadillo]; }; + TaxaNorm = derive2 { name="TaxaNorm"; version="2.4"; sha256="1qlzmq8p90igns5bcl8ll20gbaid8aavzk7rhilzq7069i349idc"; depends=[BiocGenerics future future_apply ggplot2 MASS matrixStats microbiome parallelly phyloseq pscl S4Vectors vegan]; }; TaxicabCA = derive2 { name="TaxicabCA"; version="0.1.1"; sha256="0izjf6vrdjvs9axvafr2mamr157i8w6d7m5sfjch1p5c174cpr9c"; depends=[]; }; - Taxonstand = derive2 { name="Taxonstand"; version="2.4"; sha256="0zph4618bwjfvx41ap9d2534kknbni216y90nmcvaniskw4ixm7d"; depends=[pbapply]; }; + TaylorRussell = derive2 { name="TaylorRussell"; version="1.2.1"; sha256="1shcmnlnzp0laaa0zir83iidj6m71yc7nq46frhydnjicanyi9lh"; depends=[mvtnorm shiny shinyWidgets]; }; TcGSA = derive2 { name="TcGSA"; version="0.12.10"; sha256="1bdffzq3zwvr0qsp71mp0fqf9dgx9n3f08c53adwavycwr6zg1l7"; depends=[cluster cowplot ggplot2 GSA gtools lme4 multtest reshape2 stringr]; }; Tcomp = derive2 { name="Tcomp"; version="1.0.1"; sha256="1k0gsf3yr5n9zc2yi6szxm6s7bf61lz4fx8m3v48jlp5w900prwb"; depends=[forecast Mcomp]; }; TeXCheckR = derive2 { name="TeXCheckR"; version="0.7.0"; sha256="0r85yhk3p4ibkzkbjm7j9zpryp1dhajbmaqyfwr4bv1zh29smrxa"; depends=[clisymbols crayon data_table fastmatch hunspell hutils magrittr rstudioapi zoo]; }; - TeachHist = derive2 { name="TeachHist"; version="0.2.0"; sha256="0sfs93y88c2j9nd1nbdvhs1rf20jab0akj3flxwp5fnqzdz8irg5"; depends=[dplyr ggplot2]; }; + TeachHist = derive2 { name="TeachHist"; version="0.2.1"; sha256="109gbp5anm4nh7drmyjv9nd8zmnrakgv70mw2dyxwv50j514jmwd"; depends=[dplyr ggplot2]; }; TeachNet = derive2 { name="TeachNet"; version="0.7.1"; sha256="12kkpr96mq0jr07k7ivcmwhrfgas1qrfqfhxa4gm7vv3vkjn0gs9"; depends=[]; }; TeachingDemos = derive2 { name="TeachingDemos"; version="2.12"; sha256="0i46d7269zhvr3c2a2w1lb3jnhc1cgwhcppqdmnl1ymgw5f40x9y"; depends=[]; }; TeachingSampling = derive2 { name="TeachingSampling"; version="4.1.1"; sha256="02nywwmv0r8md00kra7wxwzvm6p51l4p8la51bxh8sqq8ajsdswh"; depends=[dplyr magrittr]; }; Tejapi = derive2 { name="Tejapi"; version="1.0.1"; sha256="1v80yjbik6shqad2nvi374dpzs9bjv9ah26agy0khmwnbz6029rk"; depends=[httr jsonlite]; }; TempCont = derive2 { name="TempCont"; version="0.1.0"; sha256="1pl0czrpw74zfm5vycyl0h8hc3n5whf4g6a2759a22384gk5fq7k"; depends=[nlme]; }; - TempStable = derive2 { name="TempStable"; version="0.2.0"; sha256="1mvxl82q104899vaw44jdy5q7g76xb961zhcwvps1j9x3h27fyss"; depends=[copula doParallel foreach gsl hypergeo moments numDeriv rootSolve stabledist StableEstim VGAM]; }; + TempStable = derive2 { name="TempStable"; version="0.2.2"; sha256="0z432kpblx6v2krsxi92bpa4k19yqja09idqbka4nghcj7sgrsjr"; depends=[copula doParallel foreach gsl hypergeo moments numDeriv rootSolve stabledist StableEstim VGAM]; }; Temporal = derive2 { name="Temporal"; version="0.3.0.1"; sha256="0xsvnm4fvbyih731h6by7zva5pm11r8k0paky8kl7zdr72rpkym4"; depends=[dplyr expint numDeriv tidyr]; }; TemporalGSSA = derive2 { name="TemporalGSSA"; version="1.0.1"; sha256="0fbpgng4i46wkd38i0j5461nrmcasqpnyn58f7llpk0r6p2fizx2"; depends=[]; }; Tendril = derive2 { name="Tendril"; version="2.0.4"; sha256="1wvczfklsccs8jd081vb6d6h7i35lhf6na925fm7wq8ars0b23wd"; depends=[dplyr ggplot2 magrittr plotly plyr reshape2 scales]; }; @@ -5527,13 +5630,13 @@ in with self; { TensorTest2D = derive2 { name="TensorTest2D"; version="1.1.1"; sha256="1yx1ggsbximbsrwimyg7jblbqr0f75z278f38hg61qjxzf9m4ndk"; depends=[]; }; Ternary = derive2 { name="Ternary"; version="2.2.1"; sha256="0cjivmnyp0dpsi9qnbr59mvc0g9ljp6liiwvx856ac86cihndf8y"; depends=[PlotTools RcppHungarian shiny sp viridisLite]; }; TesiproV = derive2 { name="TesiproV"; version="0.9.2"; sha256="00igkm0y9v363djhig4ydn3bfadqf6rrrdhkai2pl1w876xk2ydw"; depends=[edfun ggplot2 gridExtra nloptr pracma]; }; - TestAnaAPP = derive2 { name="TestAnaAPP"; version="0.1.2"; sha256="0d3mas93lrqppl6padvfrssw0z36lpfnr82s33jl0d1dh66jbj5q"; depends=[bruceR cowplot dplyr DT EstCRM flextable ggplot2 golem mirt officedown officer openxlsx plotrix rmarkdown shiny shinycssloaders shinydashboard stringr tidyr tidySEM]; }; + TestAnaAPP = derive2 { name="TestAnaAPP"; version="0.1.5"; sha256="0riiypwvskpx4mzc5md8mmarknghcy64lmq3fa0rybl28qhl2mp9"; depends=[bruceR cowplot dplyr DT EstCRM flextable ggplot2 golem mirt officedown officer openxlsx plotrix rmarkdown shiny shinycssloaders shinydashboard stringr tidyr tidySEM]; }; TestCor = derive2 { name="TestCor"; version="0.0.2.2"; sha256="01ndiqi0z672ymm2bid0r0cqz8fqd9268xgmmq74z3agj81l5c5j"; depends=[MASS Rcpp RcppArmadillo]; }; TestDataImputation = derive2 { name="TestDataImputation"; version="2.3"; sha256="11acpw9vjar6g8n9cifpfs4208j1hqqp15j59mr9pnfwq747hw2z"; depends=[Amelia mice]; }; TestDesign = derive2 { name="TestDesign"; version="1.5.1"; sha256="1r59zx97g1z49x6lkiqw2kclb88jksgwj589jymwcng3h5ja68ah"; depends=[crayon foreach logitnorm lpSolve Rcpp RcppArmadillo]; }; - TestDimorph = derive2 { name="TestDimorph"; version="0.5.7"; sha256="0sim4ph2rkm450gipggdswaw2aykjgfp18i72vyjkbyqh366n125"; depends=[corrplot dplyr ggplot2 Morpho multcompView tidyr tmvtnorm truncnorm]; }; + TestDimorph = derive2 { name="TestDimorph"; version="0.5.8"; sha256="1gnjgglb2mnaidlhjhqyg4jk6cvw0n0rzzpxamq55n8yyqd2kkh3"; depends=[corrplot dplyr ggplot2 Morpho multcompView tidyr tmvtnorm truncnorm]; }; TestFunctions = derive2 { name="TestFunctions"; version="0.2.0"; sha256="018nkz8r6vqahrzq3d588i3ffb1bmd1pdk87j4ivcdsx99mq15sn"; depends=[]; }; - TestGardener = derive2 { name="TestGardener"; version="3.2.6"; sha256="1i8xrxzadgxkmxv2wcy7hw90kawm18qv9mfxm9czf08jl1bx1ydx"; depends=[dplyr fda ggplot2 ggpubr knitr plotly pracma rgl rmarkdown stringr tidyr utf8]; }; + TestGardener = derive2 { name="TestGardener"; version="3.3.0"; sha256="0rbfglfcjav32xl3mkr6pgvr3j3h8kxgp104blrncphym21ajmw8"; depends=[dplyr fda ggplot2 ggpubr knitr plotly pracma rgl rmarkdown stringr tidyr utf8]; }; TestScorer = derive2 { name="TestScorer"; version="1.7.2"; sha256="006c3g3gx55mfr93srldwvgz5vm6nkr3f57yi4qg6krn0d32865f"; depends=[]; }; TestingSimilarity = derive2 { name="TestingSimilarity"; version="1.1"; sha256="1iq0wh13rl6rby44ql4d286r1akzwmbpsvnq9p8lkl8709z0d34w"; depends=[alabama DoseFinding lattice]; }; Tex4exams = derive2 { name="Tex4exams"; version="0.1.2"; sha256="0058xn98vy40d0lfxral56avmqck7n6x2gb7j2ngnnj356di5d8m"; depends=[fractional numbers polynom pracma]; }; @@ -5553,14 +5656,14 @@ in with self; { ThreeWiseMonkeys = derive2 { name="ThreeWiseMonkeys"; version="0.1.0"; sha256="1qdb3m15q0gg8dk2znc2syy2jdqsp2893a7ilfa8rg3r2vps86yg"; depends=[stringr tuneR]; }; Thresher = derive2 { name="Thresher"; version="1.1.3"; sha256="16zf5cwc2c5j61xcrqsycwrsc162spyqgk9mac7n37mymn5agbwp"; depends=[ade4 ClassDiscovery colorspace MASS movMF oompaBase PCDimension]; }; ThresholdROC = derive2 { name="ThresholdROC"; version="2.9.2"; sha256="0r1ahhfgqq1zk9rp80i25fcxmsxsmys3xi3mf4d9fbyqlvd6dw53"; depends=[ks MASS numDeriv pROC]; }; - ThresholdROCsurvival = derive2 { name="ThresholdROCsurvival"; version="1.1.1"; sha256="10bgjs0ybd4h4hhgh7mj0sk4xwwf49dp48gvqwhvdrm11k3b52vs"; depends=[boot InformativeCensoring pROC psych survival ThresholdROC]; }; + ThresholdROCsurvival = derive2 { name="ThresholdROCsurvival"; version="1.2.0"; sha256="0zvcfysfaj45vdylsyanllfk25vwz7fs6qxbpkrr9qma0nxpnc2f"; depends=[boot InformativeCensoring pROC psych survival ThresholdROC]; }; ThurMod = derive2 { name="ThurMod"; version="1.1.11"; sha256="01ay1w3h300day5aljha93xyk0n8a98c7g5binvchgsa019mg9dd"; depends=[lavaan MASS matrixStats mvtnorm]; }; TiPS = derive2 { name="TiPS"; version="1.2.3"; sha256="061lyai1kjm5glm69wxpnqvgp1xzj8j893pa73x5fl228dqm526f"; depends=[gtools inline Rcpp stringr]; }; TideCurves = derive2 { name="TideCurves"; version="0.0.5"; sha256="1cnfnmwmlicsi243058zq3302niwk2l1agrrjy4k7rf1v7gfy6xx"; depends=[chron data_table fields]; }; TideHarmonics = derive2 { name="TideHarmonics"; version="0.1-1"; sha256="1g1v99gh6mns4l8ipmw7kpalbk07m92ybcqjq7b0wsjmdvs1y67s"; depends=[]; }; TideTables = derive2 { name="TideTables"; version="0.0.3"; sha256="0xfwikz9f58pw1j5vp45wp44lbr8b8ijlac474nzahq46d411afp"; depends=[chron data_table]; }; Tides = derive2 { name="Tides"; version="2.1"; sha256="0da3z010ali83qf8mf1znicqv8vvsa5r93mc40ax60ln2w33nlrm"; depends=[]; }; - TidyDensity = derive2 { name="TidyDensity"; version="1.2.5"; sha256="1r55yjclnf0n88scscivhixymibiz6d5mki9si04nn50bjv9qp2n"; depends=[actuar broom data_table dplyr ggplot2 magrittr nloptr patchwork plotly purrr rlang survival tidyr tidyselect]; }; + TidyDensity = derive2 { name="TidyDensity"; version="1.3.0"; sha256="1pxl4x5d4vg0y7dq0b39f4kng0x3yqdh9la7cav7ic1hijyrv6w3"; depends=[actuar broom data_table dplyr ggplot2 magrittr nloptr patchwork plotly purrr rlang survival tidyr tidyselect]; }; TidyMultiqc = derive2 { name="TidyMultiqc"; version="1.0.3"; sha256="1gnkq2ssc9lvkz1j52c2l4v1frxfcnw3j186kf3xbx8qx1aikyqr"; depends=[assertthat dplyr jsonlite magrittr purrr rlang stringr tibble]; }; TimeVTree = derive2 { name="TimeVTree"; version="0.3.1"; sha256="124kg9zcq4b2j4qvg9f6gykbmzf69qjnnw54nv213ip2h4rdkv32"; depends=[survival]; }; TimeVarConcurrentModel = derive2 { name="TimeVarConcurrentModel"; version="1.0"; sha256="0fq05yni8hasivwmv5dk5ivwkprh4fkaa7h1bv8b60savvh0zs23"; depends=[Bolstad2 fda]; }; @@ -5573,13 +5676,14 @@ in with self; { ToolsForCoDa = derive2 { name="ToolsForCoDa"; version="1.0.6"; sha256="1c37xv8h4jycnn9cnxlvby3p8hl3gfp4bdsbxm06bb323qj774pd"; depends=[calibrate HardyWeinberg MASS]; }; TopDom = derive2 { name="TopDom"; version="0.10.1"; sha256="1rryfnwvdlpdrjgs6sciy91cxfp4jykll0swclasydjvj4n642i6"; depends=[ggplot2 matrixStats reshape2 tibble]; }; TopKLists = derive2 { name="TopKLists"; version="1.0.8"; sha256="1l2fshf4w2ykhxb1bhrblcknxppy4l4w5w0pm16zcvkhrsas06cs"; depends=[gplots Hmisc]; }; + TopKSignal = derive2 { name="TopKSignal"; version="1.0"; sha256="1767v8njdi736im8fhf9yihrbxjrnyhs7xpmdzphsm55qm8rda1x"; depends=[doParallel foreach ggplot2 Matrix nloptr reshape2]; }; TopSisWM = derive2 { name="TopSisWM"; version="1.0.2"; sha256="1rhvygr07qf65qib83l061vg8j262rbgd96r1z1sm97r2b7l85z0"; depends=[]; }; TopicScore = derive2 { name="TopicScore"; version="0.0.1"; sha256="1x6s3yn25rj8mbd25yi7f2rz0nwg8n0l1vs6r250kyjb17d2javm"; depends=[combinat Matrix quadprog RSpectra slam]; }; TotalCopheneticIndex = derive2 { name="TotalCopheneticIndex"; version="2.0.1"; sha256="0i21g7zzad973802kfp8s638d3g70c4vkrm59i9frb71apvkljk2"; depends=[TreeTools]; }; ToxCrit = derive2 { name="ToxCrit"; version="1.0"; sha256="1jxi10b733k3djfykyqnpcp2fapsmaszsd7lkwcwmwq62v73rhax"; depends=[]; }; Tplyr = derive2 { name="Tplyr"; version="1.1.0"; sha256="077xhbhn00g265x6aciay75cziw2jhx2pkwgx64slhaksgyd3idm"; depends=[assertthat dplyr forcats lifecycle magrittr purrr rlang stringr tibble tidyr tidyselect]; }; - TraMineR = derive2 { name="TraMineR"; version="2.2-8"; sha256="0qp7q8hbbr57ym9q2kcypi2b6ya5z7604kwaxmqzvcbz0rf90aq5"; depends=[boot cluster colorspace RColorBrewer vegan]; }; - TraMineRextras = derive2 { name="TraMineRextras"; version="0.6.6"; sha256="172kp9pww79fjg1z5k3cfwknk0a0729nr43lb18l6cqzwmhy9bs4"; depends=[cluster colorspace doParallel foreach RColorBrewer survival TraMineR]; }; + TraMineR = derive2 { name="TraMineR"; version="2.2-9"; sha256="1gn4mpd3hkxxhdlqvpvxj2q4p03g4v1cib8048h8ar27rl5mqpvh"; depends=[boot cluster colorspace RColorBrewer vegan]; }; + TraMineRextras = derive2 { name="TraMineRextras"; version="0.6.7"; sha256="06kl8xxszwdra3dyapnk76frnz416lbkqfvxc115pnwxlf8ad8v5"; depends=[cluster colorspace doParallel foreach RColorBrewer survival TraMineR]; }; TraceAssist = derive2 { name="TraceAssist"; version="0.1.0"; sha256="03x071nsfgz1z2qp1zn1y3hfx8ydpj0z4rcfk2i588ad53z86w4c"; depends=[glmnet keras Matrix quadprog]; }; TrackReconstruction = derive2 { name="TrackReconstruction"; version="1.3"; sha256="0x2wydp9qj2r2rsv0kmwlq4y7mr391ya13rpnj3mdgl0pjdp445s"; depends=[fields RColorBrewer]; }; Trading = derive2 { name="Trading"; version="2.5"; sha256="0k048pn06qc1kvz0bj3bgfvaf3nqw6flqn4kvxj6vxhzlz3km9qs"; depends=[data_table PerformanceAnalytics reticulate]; }; @@ -5591,13 +5695,13 @@ in with self; { TransTGGM = derive2 { name="TransTGGM"; version="1.0.0"; sha256="0c815qp0nb4c8ymq9gm9yr37vkzlb6fja9j0czl6ww7rvr8fplrn"; depends=[doParallel expm glasso MASS Matrix rTensor Tlasso]; }; Transform = derive2 { name="Transform"; version="1.0"; sha256="0dynxrmpyji2dn42l4s87waz7m77ci0h7rnsc3zm6a3ya9gxgdfv"; depends=[]; }; Tratamentos_ad = derive2 { name="Tratamentos.ad"; version="0.2.4"; sha256="15xba5g5b9rxpndgmhlnnq35xjic9v7ymgpyaaj6fn0kziphip84"; depends=[crayon]; }; - TreatmentPatterns = derive2 { name="TreatmentPatterns"; version="2.5.2"; sha256="12nm3acb0ksky59mpns5hrrcqc9hcwz12k9s1wkc8xp6w1xfkhg2"; depends=[Andromeda checkmate data_table DatabaseConnector dplyr fs glue googleVis R6 rjson SqlRender stringi stringr tidyr]; }; + TreatmentPatterns = derive2 { name="TreatmentPatterns"; version="2.6.2"; sha256="0mighny8r60vg98x0fl3vchnhqx5givjnzlnqygd6slipinmgjcg"; depends=[Andromeda checkmate dplyr googleVis htmlwidgets networkD3 R6 rjson shiny shinydashboard stringi stringr sunburstR tidyr]; }; TreatmentSelection = derive2 { name="TreatmentSelection"; version="2.1.1"; sha256="1pw64hx697jg2f1r2zd8y98g3ivj2gm8fnixcjfn4drsd0xixb4p"; depends=[binom ggplot2 survival]; }; TreeBUGS = derive2 { name="TreeBUGS"; version="1.5.0"; sha256="0nxv2hh7flmyfm2pap97hwjyz29hfzybfv3b1v0ygqffgmh1j7mb"; depends=[coda hypergeo logspline MASS Rcpp RcppArmadillo rjags runjags]; }; TreeDep = derive2 { name="TreeDep"; version="0.1.3"; sha256="0ja2hp9sxzybac6dqdsns5q1rj12swl240znsnsffg9mkvzhq6rl"; depends=[ggplot2 lubridate]; }; TreeDiagram = derive2 { name="TreeDiagram"; version="0.1.1"; sha256="03kn9h37wgx300szzxmg21zc5iz3a9v8f2ydzv6dv6rhpa7yn0v5"; depends=[ape cowplot ggplot2 stringr tree]; }; TreeDimensionTest = derive2 { name="TreeDimensionTest"; version="0.0.2"; sha256="1bwvspjvc1cragbsrc05vhwk0zmfj36r9piqbj0vgahpjb4cswn9"; depends=[fitdistrplus igraph mlpack nFactors RColorBrewer Rcpp Rdpack]; }; - TreeDist = derive2 { name="TreeDist"; version="2.6.3"; sha256="165535fzmrafps9lvzdnlgxz510x34rr6aqy56hv0qhaq0h13j9j"; depends=[ape cli colorspace memoise phangorn Rcpp Rdpack shiny shinyjs TreeTools]; }; + TreeDist = derive2 { name="TreeDist"; version="2.7.0"; sha256="1x92z0ipk3rk94hxc3al76y51pzha2csry3vrflll7sgshkbr5rj"; depends=[ape cli colorspace memoise phangorn Rcpp Rdpack shiny shinyjs TreeTools]; }; TreeSearch = derive2 { name="TreeSearch"; version="1.4.0"; sha256="1nhy1bq4pkbj0c09750hzjnzgqv5k1042fjra9dw4yk24rk1dyi7"; depends=[ape cli cluster fastmatch fs future PlotTools promises protoclust Rcpp Rdpack Rogue shiny shinyjs TreeDist TreeTools]; }; TreeSim = derive2 { name="TreeSim"; version="2.4"; sha256="0nmzx2723n1f5lr951zz2ih2gnpfim5qzihlayhpf181z1qijv93"; depends=[ape geiger]; }; TreeSimGM = derive2 { name="TreeSimGM"; version="2.5"; sha256="125c9rim272h0dfyygmmijz8dcnch3g9wy1ngki77dyrmdl77yfx"; depends=[ape TreeSim]; }; @@ -5605,7 +5709,7 @@ in with self; { TrenchR = derive2 { name="TrenchR"; version="1.1.1"; sha256="0724dgm9yl906lk2vxffd465gy9kv7fdb0yymbnbq9flwxr4nfig"; depends=[deSolve msm Rdpack zoo]; }; TrendInTrend = derive2 { name="TrendInTrend"; version="1.1.3"; sha256="0ijkijyhxhjc7202qssa9wnrmwgv4miv5n8jbml4qqj80kcsbdwp"; depends=[nleqslv pracma pROC rms]; }; TrendSLR = derive2 { name="TrendSLR"; version="1.0"; sha256="1x8j2dg3m7b22gva33y4s318a41wl60sz93y868z4j65hp13jb5k"; depends=[changepoint forecast imputeTS plyr Rssa tseries zoo]; }; - TrendTM = derive2 { name="TrendTM"; version="2.0.14"; sha256="1sm2mcjwh1y3bw5gp67mlqayzy6sin6azlmycff58k6pwy88fqzf"; depends=[capushe fda softImpute]; }; + TrendTM = derive2 { name="TrendTM"; version="2.0.19"; sha256="00m8ahzfldvncn9p35f7qya890chqwizal02748nlfk4wfxjbgw7"; depends=[capushe fda softImpute]; }; Trendtwosub = derive2 { name="Trendtwosub"; version="0.0.2"; sha256="12ibxxq58h9w7hlrsxwdirh02casj495rxbfknaggwfx3w30nm56"; depends=[magrittr usethis]; }; Tri_Hierarchical_IBDs = derive2 { name="Tri.Hierarchical.IBDs"; version="1.0.0"; sha256="1wmpls4kwkgrra1pss6ddp2295ngk1ri026zf408kmfmd17vmwmj"; depends=[]; }; TriDimRegression = derive2 { name="TriDimRegression"; version="1.0.2"; sha256="1p6dncx53bk7vca193c46idsw6hvn0z5px3p3zh0qky1jan2rycl"; depends=[bayesplot BH dplyr Formula future glue loo purrr Rcpp RcppEigen RcppParallel rstan StanHeaders tidyr]; }; @@ -5620,7 +5724,7 @@ in with self; { TrtCombo_FactorialExp_SR = derive2 { name="TrtCombo.FactorialExp.SR"; version="4.0.4"; sha256="1kc5nqivsia801hdll5zcl4w6ayx7pabx7xz70l75h1f966ahnr7"; depends=[]; }; TrueSkillThroughTime = derive2 { name="TrueSkillThroughTime"; version="0.1.1"; sha256="0d5zq3aniqm06qq9pzns5q8223gp33gp0f5273z01xd43mn6ggjn"; depends=[hash]; }; TrumpetPlots = derive2 { name="TrumpetPlots"; version="0.0.1.1"; sha256="0wr4yz8qwndi7r8dw5wn1myiidvlij9sp25id7avb562hyq504pq"; depends=[data_table ggplot2 magrittr purrr]; }; - TruncExpFam = derive2 { name="TruncExpFam"; version="1.0.1"; sha256="11i28jqxy2isfqalf1b32x39d3g443kw86ci3nsb1nlzyrw6lis5"; depends=[invgamma rmutil]; }; + TruncExpFam = derive2 { name="TruncExpFam"; version="1.1.0"; sha256="1mc2ykcm3cfajln55prik6nc9r1i17klrn2arnixp56cp2y98wf3"; depends=[invgamma rmutil]; }; TruncatedNormal = derive2 { name="TruncatedNormal"; version="2.2.2"; sha256="05cfn7mdq0hgw97bbb227in9ccjz727sp67xpnpx2r1ajvl6gxdf"; depends=[alabama nleqslv randtoolbox Rcpp RcppArmadillo]; }; TukeyC = derive2 { name="TukeyC"; version="1.3-42"; sha256="1mzygb3yna1qnk0n8rvwnm32kfrjd2fqwpc4kdwadw1sl6xvp44b"; depends=[doBy xtable]; }; TukeyRegion = derive2 { name="TukeyRegion"; version="0.1.6.3"; sha256="02w84bha6niyval71a06ibk42crvv2259302ckdzmb61ik9sg44d"; depends=[bfp BH ddalpha MASS Rcpp rgl Rglpk]; }; @@ -5641,13 +5745,13 @@ in with self; { UCSCXenaTools = derive2 { name="UCSCXenaTools"; version="1.4.8"; sha256="0w0rps6jsiw67k6h8j1g0nqzwwhl1kb2by90xd4w61i71vk0fda7"; depends=[digest dplyr httr jsonlite magrittr readr rlang]; }; UComp = derive2 { name="UComp"; version="4.0.2"; sha256="0k89palrdifgrz45ar3dcnrwpxwb01nqsg9k1qkwrilhyj9c254k"; depends=[ggforce ggplot2 gridExtra Rcpp RcppArmadillo tsibble tsoutliers]; }; UKB_COVID19 = derive2 { name="UKB.COVID19"; version="0.1.3"; sha256="053hsdaa7xnzk95bdp0i1jr6pzq50zvfn1m5sm0znsrk59m5xhgm"; depends=[data_table dplyr here magrittr questionr tidyverse]; }; - UKFE = derive2 { name="UKFE"; version="0.3.0"; sha256="1yrjg99sywixriq7ibdfbz33ikwc6k2nb802prkjmiwlxhqcw10n"; depends=[xml2]; }; + UKFE = derive2 { name="UKFE"; version="0.3.2"; sha256="07g73jbamm70x3j3fgzjqbi78xqaf46sqvnrhcmq6rf0y5cdxj8c"; depends=[xml2]; }; UKgrid = derive2 { name="UKgrid"; version="0.1.3"; sha256="1x44iry2j5qbvd8ac9rv9dmg60hbhry2v4jj9hmm49bx10iwl9h2"; depends=[data_table dplyr lubridate magrittr tsibble xts zoo]; }; UNCLES = derive2 { name="UNCLES"; version="2.0"; sha256="0c61sm09dh0yfrjrjjnizg7qrf8xgc1zdldwhjh64kq8k8g5wa69"; depends=[class kohonen pdist]; }; UNCOVER = derive2 { name="UNCOVER"; version="1.1.0"; sha256="0x5ggwnzca6wz3ikpsa3aq8b715w8drkpchqp3jsg0g9imiw5y3m"; depends=[cachem crayon GGally ggnewscale ggplot2 ggpubr igraph memoise mvnfast scales]; }; UNPaC = derive2 { name="UNPaC"; version="1.1.1"; sha256="1dqli7fanh0gk2bfbcykrrswyjrl9g4rbplxjxgjri7kkmf03cd0"; depends=[huge PDSCE]; }; UPCM = derive2 { name="UPCM"; version="0.0-3"; sha256="1apah04qdgvxxf6q6xr53716pcrmds86sn8f7ykxj93ggg8k0bvl"; depends=[cubature ltm mvtnorm numDeriv Rcpp RcppArmadillo statmod]; }; - UPG = derive2 { name="UPG"; version="0.3.3"; sha256="0j27135akpkn9qsllfr871fcz7hynmxzjac35b8zm65pr6ygjcap"; depends=[coda ggplot2 knitr matrixStats mnormt pgdraw reshape2 truncnorm]; }; + UPG = derive2 { name="UPG"; version="0.3.4"; sha256="0yyyyjxrw9833w0iwnp2c3y853h8c5kj8rbkalg5rsmxk5m0fjgn"; depends=[coda ggplot2 knitr matrixStats mnormt pgdraw reshape2 truncnorm]; }; UPMASK = derive2 { name="UPMASK"; version="1.2"; sha256="160rsb0nbndf61khcs3s8xv9nj7ln8zl6l11157ywdcjqd2q5qnq"; depends=[DBI dimRed loe MASS RSQLite]; }; UPSvarApprox = derive2 { name="UPSvarApprox"; version="0.1.4"; sha256="14hj8yv366qix30x7hq1sfzrcrsx4ckfa010azi1ihzp307hfkbz"; depends=[]; }; URooTab = derive2 { name="URooTab"; version="0.1.0"; sha256="0455ssqi0byi6absaxh5xvvyw9isn2fw3rjvyhmd7h9r5w3a1yd6"; depends=[EviewsR knitr magrittr xts zoo]; }; @@ -5660,29 +5764,29 @@ in with self; { UWHAM = derive2 { name="UWHAM"; version="1.1"; sha256="162manvbmlvf8pqhcda9wx17nrdcwscb88ny2r7cvag3j04yxl54"; depends=[trust]; }; UdderQuarterInfectionData = derive2 { name="UdderQuarterInfectionData"; version="1.0.0"; sha256="084bq5ai1ccp4www64z0ipic74zkd8j1ygv0py900164a25wdr9b"; depends=[]; }; Ultimixt = derive2 { name="Ultimixt"; version="2.1"; sha256="0fh2qpm7qpv1170jzbmzqhvwsn69lblizzisgasswy2nix2jjz4y"; depends=[coda gtools]; }; - Umatrix = derive2 { name="Umatrix"; version="3.4"; sha256="1gsfk1vk19nf2bqndiiw700x8qv2cfg9k4330wbm6i31p0hr00wz"; depends=[abind AdaptGauss DataVisualizations deldir fields geometry ggplot2 pdist plyr png Rcpp reshape2 shiny shinyjs]; }; + Umatrix = derive2 { name="Umatrix"; version="3.4.1"; sha256="1nvc7zg28rwhwminn6hygvdmy0ghaivmqgn53mfdgq39mbf3xi2w"; depends=[abind AdaptGauss DataVisualizations deldir fields geometry ggplot2 pdist plyr png Rcpp reshape2 shiny shinyjs]; }; Umoments = derive2 { name="Umoments"; version="0.1.1"; sha256="089d0xmsp0419mxjp6fs0s1palvdkr0i5dzqckcn6r2kjqj7izjg"; depends=[]; }; Umpire = derive2 { name="Umpire"; version="2.0.10"; sha256="1bhz1yfvpszqz4nal2wwjgllbq0hj6y0jf2bja3nfb7amj2m10gg"; depends=[BimodalIndex mc2d]; }; UncDecomp = derive2 { name="UncDecomp"; version="1.0.1"; sha256="1m44pgk7nffay09m4gkwb0khq0qjd7bq1p72blsmib46wmnwqfsa"; depends=[dplyr ggplot2]; }; UniExactFunTest = derive2 { name="UniExactFunTest"; version="1.0.0"; sha256="03gnn36m735kycac526qrz5rkjhqcw9dp77x71z6qryy7i718qwv"; depends=[Rcpp]; }; UniIsoRegression = derive2 { name="UniIsoRegression"; version="0.0-0"; sha256="0lmrmb9sbk41ak7sbcrzhfnijb1skgb4lqg9m9imc98lcp69h7z0"; depends=[Rcpp]; }; - Unicode = derive2 { name="Unicode"; version="15.0.0-1"; sha256="071cnap6kpwhvvz1rzhh771dlm8ndqk03ca94wnxfiwrwx4da4ky"; depends=[]; }; + Unicode = derive2 { name="Unicode"; version="15.1.0-1"; sha256="1y4rdvnkmcf9kls28wbbri2mxmrqhm7jy9fb03qhn17xvrxnk12k"; depends=[]; }; UnifiedDoseFinding = derive2 { name="UnifiedDoseFinding"; version="0.1.10"; sha256="07yppm6zazqgvsv6h8kwknrbi5dfa1fivh3kb22mc2y156k7kjjz"; depends=[]; }; UniprotR = derive2 { name="UniprotR"; version="2.3.0"; sha256="0zrhfcc58vizk4rb3acibcrn2xxp6mlbyxs0pk66crfiz0qn9pd8"; depends=[alakazam curl data_tree dplyr ggplot2 ggpubr ggsci gprofiler2 gridExtra htmlwidgets httr magick magrittr networkD3 plyr progress qdapRegex scales stringr tidyverse]; }; UnitCircle = derive2 { name="UnitCircle"; version="0.1.3"; sha256="0z5ssps8l5ka4aw4984qml15scw4pfssara5dls82afhfhpkszsr"; depends=[]; }; UnitStat = derive2 { name="UnitStat"; version="1.1.0"; sha256="185ivm4kg6hzqx3srk1shvpd5vlc0akn1sbg3wqcdsk2i2x6vhhm"; depends=[lmtest]; }; UnivRNG = derive2 { name="UnivRNG"; version="1.2.3"; sha256="14z2yqv14sv16ycf7jf2kkp8pqn12d9lq4l568vmdm10qrl5x39d"; depends=[]; }; - UniversalCVI = derive2 { name="UniversalCVI"; version="1.0.1"; sha256="0havwnjbkby2v9slrwrjqxs30i5xfp9h77cdpbajrp7zmgbn15f0"; depends=[e1071 mclust]; }; + UniversalCVI = derive2 { name="UniversalCVI"; version="1.1.0"; sha256="0gyvaffqmhcqss7n4ay8rkd4s8m4k0pmblfniba3f6w5dkmvpm7p"; depends=[e1071 mclust]; }; UpDown = derive2 { name="UpDown"; version="1.2.1"; sha256="0c1mi43mkadhpalrd3wlp94ri1sp9ii5wcn44pgz35ki7nngrnaj"; depends=[dplyr ggplot2 mclust mixtools reshape2 shiny]; }; UpSetR = derive2 { name="UpSetR"; version="1.4.0"; sha256="007i0njnjjy7vbrxabwav7a1kk2n0hn2mkvqsdzzfk10ckp5y7im"; depends=[ggplot2 gridExtra plyr scales]; }; UpSetVP = derive2 { name="UpSetVP"; version="1.0.0"; sha256="1v6djfwaix978vzfjnj0vd3r0m3svfqkn9aqnf9qz2xsjk43m9zr"; depends=[ggplot2 patchwork rdacca_hp]; }; UsingR = derive2 { name="UsingR"; version="2.0-7"; sha256="17ljllslhfmi80yj1336lx9pmzy2i8zdb6byky5yay1lry7s1g30"; depends=[HistData Hmisc MASS]; }; UtilityFrailtyPH12 = derive2 { name="UtilityFrailtyPH12"; version="1.0"; sha256="06f5gmwwk1r14ab6v5jcxz0pmdph7ffi4y57mjg9byn7pjnibflk"; depends=[bindata mvtnorm Phase123 Rcpp RcppArmadillo]; }; - V8 = derive2 { name="V8"; version="4.4.0"; sha256="0ilg9ihx1mp9zj8023rh3lj875vqy253v9gbn1bw61h2p47w4nv3"; depends=[curl jsonlite Rcpp]; }; + V8 = derive2 { name="V8"; version="4.4.1"; sha256="129spn531m9arz7v8vyfsrvc69hg0w39fdnhjxrcrww37l9xcvav"; depends=[curl jsonlite Rcpp]; }; VAJointSurv = derive2 { name="VAJointSurv"; version="0.1.0"; sha256="19ib4b1kf1zg4l571f2asxkwbab44pzs954agj0wx1p6kb2v608q"; depends=[lme4 Matrix psqn Rcpp RcppArmadillo RcppEigen SimSurvNMarker survival testthat]; }; VALERIE = derive2 { name="VALERIE"; version="1.1.0"; sha256="15z8234jhh7hv3gijrvy8hap6gdgvm6qll9b00qbji7vyc3dg4pg"; depends=[GenomicAlignments GenomicRanges ggplot2 ggplotify ggpubr IRanges pheatmap plyr Rsamtools scales]; }; VALIDICLUST = derive2 { name="VALIDICLUST"; version="0.1.0"; sha256="1glcvzrbc7glxmbmas3zzb114a5cfl7gsf7xlxaifrrgvcahrvnx"; depends=[diptest dplyr]; }; - VAM = derive2 { name="VAM"; version="1.0.0"; sha256="04lq8i4zwdc9a4n4hvabdyv4a4cmmqbf534cdnnck7jc0dk5rphr"; depends=[MASS Matrix]; }; + VAM = derive2 { name="VAM"; version="1.1.0"; sha256="1nl4kzp3j424cy6m5p8n9lf742vls2aw60ywy6dig4963nl4jdkh"; depends=[MASS Matrix]; }; VAR_etp = derive2 { name="VAR.etp"; version="1.1"; sha256="03zybsn28r6jz8rshmifgqavx4kmfvj92wbqjf5fvfj4fypis8kx"; depends=[]; }; VARDetect = derive2 { name="VARDetect"; version="0.1.6"; sha256="1yrlyg4b53bdmfjcqi07l0gr3f01h8jwj6g6av3plyk96cvl4svb"; depends=[igraph lattice MTS mvtnorm pracma Rcpp RcppArmadillo sparsevar]; }; VARSELECTEXPOSURE = derive2 { name="VARSELECTEXPOSURE"; version="1.0.3"; sha256="0hfcy00zynrg2vfqym17zfs3ggm4wvsvjf2qib4pbd53qfhzabwa"; depends=[Rcpp RcppArmadillo]; }; @@ -5696,13 +5800,13 @@ in with self; { VDJgermlines = derive2 { name="VDJgermlines"; version="0.1"; sha256="1aqjhkcj3bd5hk7iz0f2cy5nfp23gvhqsmg6nzlxd9klwc6xpq2h"; depends=[ape stringdist]; }; VDSM = derive2 { name="VDSM"; version="0.1.1"; sha256="09h09av2yydq1vwd77lgfjjk87432sas60905sxkw0mjixf6hq22"; depends=[dplyr ggplot2 gridExtra knitr plyr viridis]; }; VDSPCalibration = derive2 { name="VDSPCalibration"; version="1.0"; sha256="1hrmmhvk3mhd3bdl0msnm5shcj4cjgd3pn1rkfkv8fh4llqvz7w8"; depends=[]; }; - VEwaning = derive2 { name="VEwaning"; version="1.2"; sha256="1438j8dlfmn2yacg1haa66fmmv11x49b38qyl03jvw9vcxi1gz4x"; depends=[ggplot2 survival]; }; - VEwaningVariant = derive2 { name="VEwaningVariant"; version="1.3"; sha256="1w0d7z86gg16vjg3bd9flr53q02wjz5hzs0460hx167ixi13m5jv"; depends=[ggplot2 Rcpp RcppArmadillo survival]; }; + VEwaning = derive2 { name="VEwaning"; version="1.3"; sha256="0zg5m7bx1vj9libvg8l3g8wnsnqd565jjsqvwghml62wfsdhghk4"; depends=[ggplot2 survival]; }; + VEwaningVariant = derive2 { name="VEwaningVariant"; version="1.4"; sha256="1fg44cy2i138b21y610bj64xjwwp96wilngy3rq89vsvkj40rird"; depends=[ggplot2 Rcpp RcppArmadillo survival]; }; VFP = derive2 { name="VFP"; version="1.4.1"; sha256="14idww1vy695mp9v2h0nxqi6flmm41cr30i0yd2nwjsnriwqgzak"; depends=[gnm MASS VCA]; }; VFS = derive2 { name="VFS"; version="1.0.2"; sha256="1b8sl8id2gj4iqkpjzd3giybbix2jvskwsbw1kqj3zqr77hygxwg"; depends=[e1071 nleqslv]; }; VGAM = derive2 { name="VGAM"; version="1.1-9"; sha256="1l5gn6495k8vqp2b4hj4g5ani7j4cli2p7n8fwkw7bmc42q13m6l"; depends=[]; }; VGAMdata = derive2 { name="VGAMdata"; version="1.1-9"; sha256="1bk4c22rwpcm5aa1kdg0dh8c87pb54639xhlh4dkxwx2idn6s9b5"; depends=[VGAM]; }; - VGAMextra = derive2 { name="VGAMextra"; version="0.0-5"; sha256="11s7s2dm2yf5s9qbwbyavz01l9fk86grp4mlhrh8hd6lfmxxxcxm"; depends=[VGAM]; }; + VGAMextra = derive2 { name="VGAMextra"; version="0.0-6"; sha256="061mlhiqdncgjzyflpjjhmssjp7z33k9xrz7dmcgsrw37fb97jrs"; depends=[VGAM]; }; VHDClassification = derive2 { name="VHDClassification"; version="0.3"; sha256="1ij4h3gzxb9mm9q743kc3sg2q609mnqz6mhlrbim1wcjji2b7bv4"; depends=[e1071 lattice]; }; VIC5 = derive2 { name="VIC5"; version="0.2.6"; sha256="1zkvzkras94gyc43b9j4bq4mpyg9l1idx2pdd8a728gmq1daky0k"; depends=[foreach lubridate Rcpp RcppArmadillo]; }; VIGoR = derive2 { name="VIGoR"; version="1.1.2"; sha256="0ikyfla1c4x6plm05pihaas6qz43dip20i75c4cwk1lq7fqayq92"; depends=[]; }; @@ -5730,7 +5834,7 @@ in with self; { VarSelLCM = derive2 { name="VarSelLCM"; version="2.1.3.1"; sha256="03rg7zh1cq55vfc0ak6j7crs4n7fnbsxz8nllmplklx8wm47krf5"; depends=[ggplot2 mgcv Rcpp RcppArmadillo shiny]; }; VarfromPDB = derive2 { name="VarfromPDB"; version="2.2.10"; sha256="09j8y6n0bwsj3n620nbni6b7f4pmb91q41770sfpc5v3l5i3jc7c"; depends=[curl RISmed stringi stringr XML XML2R]; }; VariableScreening = derive2 { name="VariableScreening"; version="0.2.1"; sha256="0djfpv46fhc3x4jvmjr93lyh4fxfzzvyrs3wjncx3h0z0s9n6w45"; depends=[energy expm gee MASS]; }; - VarianceGamma = derive2 { name="VarianceGamma"; version="0.4-0"; sha256="0n3vmyxfn0sid6zax4n8508li7gnfdd4gghpf3i296dm3w8wn8ip"; depends=[DistributionUtils GeneralizedHyperbolic]; }; + VarianceGamma = derive2 { name="VarianceGamma"; version="0.4-2"; sha256="1ihzwr8g7cmasicjw79fyksfm6kl9qzx04611a73ql0gp0pmq62y"; depends=[DistributionUtils GeneralizedHyperbolic]; }; Vdgraph = derive2 { name="Vdgraph"; version="2.2-7"; sha256="0kqcwlw8dsxb1jlp412m9a372kz26sampv56saxalf8rcyd3s2jp"; depends=[]; }; VectorCodeR = derive2 { name="VectorCodeR"; version="0.2.0"; sha256="005nd55syn2f2a54ilbw3mi8r51gn5qfw4rdnkygpbgfngza01f8"; depends=[dplyr ggplot2 readxl tidyr tidyverse]; }; VedicDateTime = derive2 { name="VedicDateTime"; version="0.1.9"; sha256="08kkwb5k0n4hjy9rw7bdgpls14a8xdnw3v0g56hhhxnwxf6whmly"; depends=[swephR]; }; @@ -5759,15 +5863,15 @@ in with self; { W4MRUtils = derive2 { name="W4MRUtils"; version="1.0.0"; sha256="1hzr2p3kp9k2y154a2p9qc9shyqpkh0m5ylk2f9ivm4m0f3ifqdp"; depends=[rlang]; }; WA = derive2 { name="WA"; version="1.0"; sha256="0i6hkajfalwpvxmmzfl7nhk4x6hhrf0xqpgny8b1gk1hw05yv03m"; depends=[]; }; WACS = derive2 { name="WACS"; version="1.1.0"; sha256="09fmdlpb99q9dw17lwp0bwpklgvgiqq7bfs9ryx5r54m0niklr9d"; depends=[mclust mnormt mvtnorm tmvtnorm]; }; - WALS = derive2 { name="WALS"; version="0.2.3"; sha256="1sz55yw8cmnssyjvvr3xvjks3i2gn3cgalra7hkx24v18lp47ksc"; depends=[Formula MASS Rdpack]; }; + WALS = derive2 { name="WALS"; version="0.2.4"; sha256="0pqvmdvgxrf05avkgynx2hwqp6k3a3vhhiis5vwijz9ccjgac0kz"; depends=[Formula MASS Rdpack]; }; WARN = derive2 { name="WARN"; version="1.2-4"; sha256="18gfk9vqcqarj7j5i240wqv2dclg3csng4mih5izj40xaaxaf6q5"; depends=[MASS]; }; WASP = derive2 { name="WASP"; version="1.4.3"; sha256="1w822wl8zp94a60y9jsryc1r1m025pl2100fx5i8np46mm3pmn58"; depends=[ggplot2 rlang sp tidyr waveslim]; }; WCE = derive2 { name="WCE"; version="1.0.2"; sha256="105pwpd9ikm0gwz4r12jl6cgs1riwsk9pn5qk9cn3msgwa0sdynx"; depends=[plyr survival]; }; WCM = derive2 { name="WCM"; version="0.2.2"; sha256="0w1m2vcxc64ksw3dm94wdigil2fpv3cvzyqmkhs2zrfjlgrdchcd"; depends=[pracma raster]; }; - WCluster = derive2 { name="WCluster"; version="1.1.0"; sha256="1crzhg0kldmyamxvj5wf3ik9x36sm1nw9kd6jgpnb0jdqlx2pd2s"; depends=[cluster datanugget]; }; + WCluster = derive2 { name="WCluster"; version="1.2.0"; sha256="0bv0q05gr1jw1ihamw7fqsvrcpr7qrwa9vry6v32qckacfr594rv"; depends=[cluster datanugget]; }; WDI = derive2 { name="WDI"; version="2.7.8"; sha256="1q7d74y3vi13zmpinky4ayn0n292rslg7fd112hxvjiqbmq6mxdc"; depends=[jsonlite]; }; WEGE = derive2 { name="WEGE"; version="0.1.0"; sha256="17g4cgx0ajgj7lgxzi467cjbmbc47skyarcm88vqjc3i1j55dw12"; depends=[raster sf sp]; }; - WGCNA = derive2 { name="WGCNA"; version="1.72-1"; sha256="1p3zsl5r6l5r6ylnrxmbxjpim5qgmncgdjcgn5j69rzk3rv85gqx"; depends=[AnnotationDbi doParallel dynamicTreeCut fastcluster foreach GO_db Hmisc impute matrixStats preprocessCore Rcpp survival]; }; + WGCNA = derive2 { name="WGCNA"; version="1.72-5"; sha256="17g7lan1rpy6y4nmqksrf9ddp3gs58vdczfavgq1fp13zx1r2hq3"; depends=[AnnotationDbi doParallel dynamicTreeCut fastcluster foreach GO_db Hmisc impute matrixStats preprocessCore Rcpp survival]; }; WGScan = derive2 { name="WGScan"; version="0.1"; sha256="0jma6di9hbdimswdfm58568vahcjy46hbhb78idjsdz4bl9apvq3"; depends=[data_table MASS Matrix seqminer SKAT]; }; WH = derive2 { name="WH"; version="1.1.0"; sha256="0zz7936s6yd30q1yxxwbkaczin3r2l189b27nqsfyazbav27hfsb"; depends=[]; }; WINS = derive2 { name="WINS"; version="1.3.3"; sha256="0chw2v3ba766p8bjh1vzgrx6s7gm586ylvdsal1kmfxv4lkjc8rh"; depends=[copula ggplot2 ggpubr reshape2 stringr survival viridis]; }; @@ -5778,13 +5882,13 @@ in with self; { WPKDE = derive2 { name="WPKDE"; version="0.1"; sha256="100vla11fbw16x5n4w4kbslz4n725v4x6j0hrxzrk99ryl0crmf6"; depends=[]; }; WR = derive2 { name="WR"; version="1.0"; sha256="10813dzq3pn354g5x7hczi6aq61kmfrl8y4wc005bsxj0ipz0a06"; depends=[cubature gumbel survival]; }; WRI = derive2 { name="WRI"; version="0.2.0"; sha256="1hm23p0b4k03dxrbia9kq6r3n2c57glllraglxrj2vgnvwn6sl2c"; depends=[CVXR expm fdadensity fdapace ggplot2 gridExtra locfit locpol modeest mvtnorm polynom Rcpp RcppArmadillo Rfast rlang]; }; - WRS2 = derive2 { name="WRS2"; version="1.1-4"; sha256="1838wy59cqd65s0bw6c24xcvx7zflypqcbgs35l9s2fj87vw2hdc"; depends=[MASS mc2d plyr reshape]; }; + WRS2 = derive2 { name="WRS2"; version="1.1-5"; sha256="028xs424m879siaf3rrhzl1dacp9j7wcl5fpikyx2n0cc7anq4vq"; depends=[MASS plyr reshape]; }; WRSS = derive2 { name="WRSS"; version="3.1"; sha256="0fhmdnkk94m1bqm1i69szv3ycbkzr08xy30mwpqvbij9nh2sqj0w"; depends=[GGally ggplot2 Hmisc network nloptr]; }; WRTDStidal = derive2 { name="WRTDStidal"; version="1.1.4"; sha256="1clv6gd0qlkykllki5jkmhd1znrccyg1mv6w69wz8fj65b2466zd"; depends=[caret dplyr fields foreach forecast ggplot2 gridExtra lubridate purrr quantreg RColorBrewer survival tidyr]; }; + WRestimates = derive2 { name="WRestimates"; version="0.1.0"; sha256="03anhcwq9xlzj3zh7kpqm5n6znqiwvkwnd0w1b82my9rk3gp63gw"; depends=[]; }; WSGeometry = derive2 { name="WSGeometry"; version="1.2.1"; sha256="073cvvbhzx5nllrwfyz6bxvskmkm88i7wq93m2d0q60pzwzsxwzl"; depends=[expm imager lpSolve Matrix plot3D Rcpp RcppArmadillo RSpectra transport]; }; WVPlots = derive2 { name="WVPlots"; version="1.3.7"; sha256="0zaqy1gii5ry2djqlyjqhiy4pqwng7r7lrpf1bw8g47v9vjjlq33"; depends=[cdata ggplot2 gridExtra mgcv rlang rqdatatable rquery sigr wrapr]; }; WWGbook = derive2 { name="WWGbook"; version="1.0.2"; sha256="05dzgb2b1md981882sp85dvmrsak5v7gwkww1shqfm34zmk9dbkn"; depends=[]; }; - WWR = derive2 { name="WWR"; version="1.2.2"; sha256="0ia1dd12r1l08s9nhgvk55jmqwv58jawm25gd2ni6wpa3mcmq02g"; depends=[inline]; }; WaMaSim = derive2 { name="WaMaSim"; version="1.0.0"; sha256="0sa7qd2bpn3sp06mlpissxxkfhg7j1d07nnwlnz7nyg7pivwnpan"; depends=[magrittr]; }; WallomicsData = derive2 { name="WallomicsData"; version="1.0"; sha256="1bv2v0gjb6v5p7rmm8nc00xnkdw60552siyfhz4y60wm1cygclbq"; depends=[]; }; Wats = derive2 { name="Wats"; version="1.0.1"; sha256="0xld5163srlyqd9rbmi618drkrimys7ifgzrq05ky22ns2qa4qfv"; depends=[colorspace dplyr ggplot2 lubridate RColorBrewer rlang testit tibble zoo]; }; @@ -5804,7 +5908,7 @@ in with self; { WaverR = derive2 { name="WaverR"; version="1.0"; sha256="084fhzggzm075w6wp2lqd3j0an21idhw8z5l8ynz4y96mpmn204a"; depends=[kimisc MASS]; }; WaverideR = derive2 { name="WaverideR"; version="0.3.2"; sha256="1lm7xq443vninrph21xq6dikpd42xl9ilwfb22lfba2b7j7j5z6g"; depends=[astrochron biwavelet colorednoise colorRamps DecomposeR DescTools doSNOW fANCOVA foreach Hmisc magick Matrix matrixStats RColorBrewer reshape2 rlist truncnorm viridis WaveletComp]; }; Wcompo = derive2 { name="Wcompo"; version="1.0"; sha256="1rd7y86q8qi7w9878ng0zdk3zpxnjyzpmrm2mj5lm60hkd72xyrw"; depends=[survival]; }; - WeMix = derive2 { name="WeMix"; version="4.0.0"; sha256="19f655crg6zqbrlrcj7skp1qrxkn6fjahirvniy1b3xxikg84wvg"; depends=[lme4 Matrix matrixStats minqa NPflow numDeriv Rmpfr statmod]; }; + WeMix = derive2 { name="WeMix"; version="4.0.3"; sha256="1ykg7sphnm15a3dlkkhv18ycsclaw363yldfsyc83hf01vlghf77"; depends=[lme4 Matrix matrixStats minqa numDeriv]; }; WebAnalytics = derive2 { name="WebAnalytics"; version="0.9.12"; sha256="031gyndk605841ns33pifhfwlasa39jhrmvigw84iqc2dgxqqpgl"; depends=[brew data_table digest fs ggplot2 reshape2 scales tinytex uaparserjs xtable]; }; WebGestaltR = derive2 { name="WebGestaltR"; version="0.4.6"; sha256="1xwadw9maj3n9yxm4bv63hx4x1lh6krqhfcnwn2ay6jgwh7y6zxw"; depends=[apcluster doParallel doRNG dplyr foreach httr igraph jsonlite Rcpp readr rlang svglite whisker]; }; WebPower = derive2 { name="WebPower"; version="0.9.4"; sha256="0idfm9mr4sffyzyihggy5kmsklx178g8c5ikp34kxz74jkz0rzn5"; depends=[dplyr lavaan lme4 MASS PearsonDS]; }; @@ -5815,32 +5919,33 @@ in with self; { WeibullR_plotly = derive2 { name="WeibullR.plotly"; version="0.2.0"; sha256="1ymggxqhn2bc6r25vzp4vlr18pcw9vnn24ylwspk8vq8j00pn197"; depends=[plotly WeibullR]; }; WeibullR_shiny = derive2 { name="WeibullR.shiny"; version="0.2.0"; sha256="0qzwn967p54j03h9nmzljx547iqgnyq3xzfri5k0i5lpvxsdp7hs"; depends=[shiny shinydashboard WeibullR WeibullR_plotly]; }; WeightIt = derive2 { name="WeightIt"; version="0.14.2"; sha256="13gjmywqdrbyfrjx0lmizhsg8wbrb3frwks2hw7k387yjllzbvsb"; depends=[backports chk cobalt crayon ggplot2 rlang]; }; - WeightSVM = derive2 { name="WeightSVM"; version="1.7-11"; sha256="0sbf81j579k46bg11wv987ax7ncfmp6sy61w6ydk1dr9hcfjv3s9"; depends=[]; }; + WeightSVM = derive2 { name="WeightSVM"; version="1.7-13"; sha256="19dai6v14h644dwa1054kmkhp4p24qvvkpzf45zz942ki24n2day"; depends=[]; }; Weighted_Desc_Stat = derive2 { name="Weighted.Desc.Stat"; version="1.0"; sha256="030i12mnwlj976avvk3grrccgprsckmc35dm2ajwdfc9dijhypnj"; depends=[]; }; WeightedCluster = derive2 { name="WeightedCluster"; version="1.6-4"; sha256="1ayi50wjy7grzapfnyvmbi6rz7amfhdd1nxh56h1s4anv7rf20c4"; depends=[cluster doFuture foreach future nnet progressr RColorBrewer TraMineR]; }; WeightedEnsemble = derive2 { name="WeightedEnsemble"; version="0.1.0"; sha256="0lvi8362fpmybm1icdp63ys5pdsa2qc54bsdwp7345xk7jmqzh1v"; depends=[metaheuristicOpt]; }; WeightedPortTest = derive2 { name="WeightedPortTest"; version="1.1"; sha256="0kv9ip38l659cwqkw6l831za2y2610w4cxpw1jxsph0h2qdfm8fx"; depends=[]; }; WeightedROC = derive2 { name="WeightedROC"; version="2020.1.31"; sha256="1f43hwsabciraj1qxfh5wcqnnx1vvcf4pwqs376rcfd9161k15xv"; depends=[]; }; + WeightedTreemaps = derive2 { name="WeightedTreemaps"; version="0.1.2"; sha256="1jbbf915jny6lpbhv4m0grkadgjmw7vh1izql4kdbn3w5p5j8m1x"; depends=[BH colorspace dplyr lattice Rcpp RcppCGAL scales sf sp tibble]; }; WgtEff = derive2 { name="WgtEff"; version="0.1.2"; sha256="1z8pndv43ssgmzldwaq0088lmf1g2mkmrbmzyaismcpngn9fqxsk"; depends=[]; }; WhatIf = derive2 { name="WhatIf"; version="1.5-10"; sha256="19w5qw123iahrx96379lrx8i7v3x2ck5dhklf58iw0dmj4pfy2kg"; depends=[lpSolve pbmcapply]; }; - WhatsR = derive2 { name="WhatsR"; version="1.0.1"; sha256="12pddpf84miq7693ifv00z41w555fqw110d4ldlgcb7vxyx0rh8m"; depends=[anytime checkmate data_table dplyr ggmap ggplot2 ggwordcloud lubridate mgsub qdap qdapRegex ragg readr rvest stringi tokenizers visNetwork XML xml2]; }; + WhatsR = derive2 { name="WhatsR"; version="1.0.2"; sha256="1j6nc0vlgbsgyx18iknxf2r19f8wir8w1iwxnv48w0fmxzwjpa1a"; depends=[anytime checkmate data_table dplyr ggplot2 ggwordcloud lubridate mgsub qdap qdapRegex ragg readr stringi stringr tokenizers visNetwork]; }; WhiteStripe = derive2 { name="WhiteStripe"; version="2.4.2"; sha256="1w9shk9qx365pxi2nglvjd26xggylswd83aclg7l45q0dlli3x31"; depends=[mgcv neurobase oro_nifti]; }; - WienR = derive2 { name="WienR"; version="0.3-14"; sha256="0f4djjrj929d0a1cd4nxgvbki92k462wgrj5k9ma5v2jjl7lijdj"; depends=[]; }; + WienR = derive2 { name="WienR"; version="0.3-15"; sha256="00a5d287h78j7ccfarzc2l6i76shw5akzh4ggn6mb183b67nf9k8"; depends=[]; }; WikidataQueryServiceR = derive2 { name="WikidataQueryServiceR"; version="1.0.0"; sha256="1bl1nbhbmss8cj9ni7plsjs996n4rwqv6h8bh1zj4whs8z4fw50f"; depends=[dplyr httr jsonlite purrr ratelimitr readr rex WikipediR]; }; WikidataR = derive2 { name="WikidataR"; version="2.3.3"; sha256="120833b7zyq1rhmn9c8iv0j6br60af7gbn5lc4dil55qhh2lp9rx"; depends=[crayon dplyr Hmisc httr jsonlite pbapply progress readr stringr tibble WikidataQueryServiceR WikipediR]; }; WikipediR = derive2 { name="WikipediR"; version="1.5.0"; sha256="1w4ggq42vlq7zbrz3v9ripz9yscbd8m8as60q7cplpxn9zqfdl7q"; depends=[httr jsonlite]; }; WinRatio = derive2 { name="WinRatio"; version="1.0"; sha256="0d064qq9zad9bdacldhicj3xhyrvp0fcqrxfj594yzra2qwgkx90"; depends=[dplyr magrittr Rcpp tidyselect tidyverse]; }; WindCurves = derive2 { name="WindCurves"; version="0.2"; sha256="1vvcp1g5a677g9zqssdkh3zdy646zdkzy75nqhy497bpcgw43q1b"; depends=[readbitmap]; }; - WoodSimulatR = derive2 { name="WoodSimulatR"; version="0.6.0"; sha256="1hd696wc9r65cfsfklh6gv502gx8qp75i8j26291rgc94hb11wlr"; depends=[dplyr purrr rlang tibble tidyr tidyselect]; }; + WoodSimulatR = derive2 { name="WoodSimulatR"; version="0.6.1"; sha256="170bakkny7k6j22qwal9z2sycils1a7imajzvlzjbrasjy81m2l7"; depends=[dplyr purrr rlang tibble tidyr tidyselect]; }; WoodburyMatrix = derive2 { name="WoodburyMatrix"; version="0.0.3"; sha256="0pmm032lyk31bv30dwz7ajz2ihppp13i1ibpnnc9x9ga3axxhpj7"; depends=[Matrix]; }; WordOfMouth = derive2 { name="WordOfMouth"; version="1.1.0"; sha256="199hnirbmwarn04ky1147x5c048j087rdml86qcp92kzp20679v3"; depends=[LambertW]; }; WordPools = derive2 { name="WordPools"; version="1.2.0"; sha256="0g3ws2ndl34f8z4nxqij8ifwqs5n3nwn9fjgjqgg1sn5apkc2zcf"; depends=[]; }; WordR = derive2 { name="WordR"; version="0.3.6"; sha256="096b6msnl1rmikx40j7abb9rhw1vayvf9fjq6i8hrjvv38dbaa1d"; depends=[dplyr flextable officer xml2]; }; - WorldFlora = derive2 { name="WorldFlora"; version="1.13-2"; sha256="1x2sa6a1zri8c17b88cpwdjk7jyrk8xaish8bi5nlg5m3zkmnh6c"; depends=[]; }; + WorldFlora = derive2 { name="WorldFlora"; version="1.14-1"; sha256="1z3kcdsq5x0iqbvmspfjfwh4471p2yig2l6j9y6hiidxa09nfgr6"; depends=[]; }; WormTensor = derive2 { name="WormTensor"; version="0.1.0"; sha256="0l55dbcf65cpw03b26va4ssvk3wc0i6hnchb9jyw44369y5xfniy"; depends=[aricode cluster clusterSim clValid cowplot dtwclust factoextra ggplot2 ggrepel rTensor Rtsne usedist uwot]; }; WrensBookshelf = derive2 { name="WrensBookshelf"; version="0.1.0"; sha256="1g83i9qmlidxy55cmvx0sqqrkps9fmvj0sh7jc92v89qwx73pfr0"; depends=[ggplot2]; }; WrightMap = derive2 { name="WrightMap"; version="1.3"; sha256="0c1v8wjqbr9y447h9iz9h2izrm1msdaz3mx1ry47qlcrq6ddlj9v"; depends=[RColorBrewer]; }; - WriteXLS = derive2 { name="WriteXLS"; version="6.4.0"; sha256="1dqr98kx930y6mcvb9b39xiwshhs250gkd2vw2v6iil34sl90jv4"; depends=[]; }; + WriteXLS = derive2 { name="WriteXLS"; version="6.5.0"; sha256="1rkc0r6l7cfz7h83i7gw6g0nlyy347mdh6bj73j0f8mdv3nmwwn4"; depends=[]; }; WtTopsis = derive2 { name="WtTopsis"; version="1.0"; sha256="0zwx75rgdyh7pjxjvd5xvxqkfryvhq2csn4sd0py0dgmjxb5p3ja"; depends=[]; }; WufooR = derive2 { name="WufooR"; version="1.0.1"; sha256="0iq1lc1b22zdvclkr4yivxxf8z5mdxik7lx9r3b38h2qy2rckqb2"; depends=[dplyr httr jsonlite]; }; XBRL = derive2 { name="XBRL"; version="0.99.19.1"; sha256="0mwpk84kp6r7f6fmlby0ka58fj50y592afxzp0wcrzmx65abp7md"; depends=[Rcpp]; }; @@ -5848,7 +5953,7 @@ in with self; { XKCDdata = derive2 { name="XKCDdata"; version="0.1.0"; sha256="1lx9frlbc549qrh4d3m79r3l9icfzqkgfgp8raa8x46a2havi0a5"; depends=[assertthat dplyr glue htmltools httr jsonlite magrittr tibble]; }; XLConnect = derive2 { name="XLConnect"; version="1.0.7"; sha256="0xz65nrp82cxa77bff66hhch1p75a6di29bmbr2lfc9w3hivl7c2"; depends=[rJava]; }; XLS = derive2 { name="XLS"; version="0.1.0"; sha256="0a4jbfz9x9rn4k5v7qh3r9p7pal4piqg01469237lkq00m3lijy5"; depends=[mpoly]; }; - XML = derive2 { name="XML"; version="3.99-0.14"; sha256="1ygi65ddgbsamxw2rm0p2clfak1xj44xyisgk48y72cd9ldaddic"; depends=[]; }; + XML = derive2 { name="XML"; version="3.99-0.16"; sha256="0ny93jlx0fpv0hs9qjm9cbcv4fh5rh0kkyhk6g0dm8wvp6x3f39m"; depends=[]; }; XML2R = derive2 { name="XML2R"; version="0.0.6"; sha256="0azfh950r2b7ck3n1vzk3mdll7zy844nx3mbk676jxnj8gg7nxk5"; depends=[plyr RCurl XML]; }; XNomial = derive2 { name="XNomial"; version="1.0.4"; sha256="1mwx302576rmsjllbq2clfxilm3hkyp5bw0wmwqbn0kgv5wpy8z6"; depends=[]; }; XR = derive2 { name="XR"; version="0.7.2"; sha256="0j8rkjw9y7mb0yj24nlisfd84148pnnakz8i2y35y2b8gmh5zhvz"; depends=[jsonlite]; }; @@ -5856,7 +5961,7 @@ in with self; { XRPython = derive2 { name="XRPython"; version="0.8"; sha256="0alg33spiaqf3jwg1qn543nxvbfaqv8gvf5px3grhbgrcmi5mcmj"; depends=[reticulate XR]; }; XRSCC = derive2 { name="XRSCC"; version="0.1"; sha256="0hs2whjsd02avaz79zkrd8gjw9qd7l6ysxmhx4w1r7gb1cj9rr7c"; depends=[]; }; XiMpLe = derive2 { name="XiMpLe"; version="0.11-2"; sha256="0pa06jm9g308pbh8bal7mjaiwbsjbdsxiyvm0f01405j3wkf64m3"; depends=[]; }; - Xplortext = derive2 { name="Xplortext"; version="1.5.2"; sha256="149frkkmpxhpcbjdqkjvdlqd6k95hjdydnvgfq4bhi4d8gz2sgzi"; depends=[FactoMineR flashClust flexclust ggdendro ggforce ggplot2 ggrepel gridExtra MASS plotly slam stringi stringr tm vegan]; }; + Xplortext = derive2 { name="Xplortext"; version="1.5.3"; sha256="1pmynw9zxfflzhw3iqf1gfv0c3fz2nj308hxzwjgpcds7fm2sqzm"; depends=[FactoMineR flashClust flexclust ggdendro ggforce ggplot2 ggrepel gridExtra MASS plotly slam stringi stringr tm vegan]; }; YPBP = derive2 { name="YPBP"; version="0.0.1"; sha256="1slc7glr4hb0my5zkssprngb6si98npjj33nsbsm0nbm61hnb9n8"; depends=[BH Formula MASS Rcpp RcppEigen rstan rstantools StanHeaders survival]; }; YPInterimTesting = derive2 { name="YPInterimTesting"; version="1.0.3"; sha256="0fca963rsbs9k7ivffsqk4hzap6ll7s709kqs6aby0plghrdla2w"; depends=[MASS Rcpp]; }; YPPE = derive2 { name="YPPE"; version="1.0.1"; sha256="01q0l22nwfpld2wcygk5x28c2c6cv35hxy2fm1azn8bqsv7xy5il"; depends=[BH Formula MASS Rcpp RcppEigen rstan rstantools StanHeaders survival]; }; @@ -5876,8 +5981,8 @@ in with self; { ZINARp = derive2 { name="ZINARp"; version="0.1.0"; sha256="1s5nvxcc7nw2kz90i7fqw5fi2qzzbsm5ppn92695v44q38h8jw9s"; depends=[progress]; }; ZIPBayes = derive2 { name="ZIPBayes"; version="1.0.2"; sha256="0j56smgf44fki70jc6aypksbl70pyppc6s3xv82yrq5rndym077k"; depends=[MASS Rcpp]; }; ZIPFA = derive2 { name="ZIPFA"; version="0.8.1"; sha256="134pkdn4slhiv27rdkkmh2z7xch30ns0jhzxgd7r05bky0z1iri1"; depends=[doParallel foreach Matrix optimx trustOptim]; }; - ZIPG = derive2 { name="ZIPG"; version="1.0"; sha256="00dbxywmfkbi7svpnagqy49vfff33j9kychv6x4bpsm9inh8r94a"; depends=[MASS optimr pscl]; }; ZIprop = derive2 { name="ZIprop"; version="0.1.1"; sha256="1gvf6z7mx543a0hiqcknwhkplqa3mfmw3swi8n9vma10bqmgysx7"; depends=[data_table purrr rgenoud]; }; + ZLAvian = derive2 { name="ZLAvian"; version="0.1.0"; sha256="0ay54al5gr2jxb2v2zj23d0ypnkp8k37vxvg0c0mirb0qd23gqrp"; depends=[doParallel lme4 performance]; }; ZRA = derive2 { name="ZRA"; version="0.2"; sha256="1sx1q5yf68hhlb5j1hicpj594rmgajqr25llg7ax416j0m2rnagi"; depends=[dygraphs forecast]; }; ZVCV = derive2 { name="ZVCV"; version="2.1.2"; sha256="0ws0v7i6r7skb8lv6j718k29v5qsy1b007jxidv81iv0jcz9zfpy"; depends=[abind BH dplyr glmnet magrittr mvtnorm Rcpp RcppArmadillo Rlinsolve]; }; ZeBook = derive2 { name="ZeBook"; version="1.1"; sha256="0v98kbz9njjdx60x9dn8hl8mc6x19i5knjyg2gkwfd667yy1rkl6"; depends=[deSolve triangle]; }; @@ -5898,7 +6003,6 @@ in with self; { aVirtualTwins = derive2 { name="aVirtualTwins"; version="1.0.1"; sha256="1jg19ns3mxfycc11i2c152d83n4kqz3dd6d269sijnxrw80kzjki"; depends=[party randomForest rpart]; }; abasequence = derive2 { name="abasequence"; version="0.1.0"; sha256="033mbc1ghkadvxdckz1f04p8d5ml3ifmssdd1y4qj70nx7x9hs4l"; depends=[]; }; abbreviate = derive2 { name="abbreviate"; version="0.1"; sha256="1cvjdbi17qz8gr5898zchm5fyz4n51z66lwps25v8a9mhwab8imi"; depends=[]; }; - abbyyR = derive2 { name="abbyyR"; version="0.5.5"; sha256="1vldnd3dg89aj6a73nhirirqddbfdrnzhb5m3679i60sark8nk6r"; depends=[curl httr plyr progress readr XML]; }; abc = derive2 { name="abc"; version="2.2.1"; sha256="16753lyzk2dfwgdjfyanwacqw3bvrwby52inq4709804labs6lnv"; depends=[abc_data locfit MASS nnet quantreg]; }; abc_data = derive2 { name="abc.data"; version="1.0"; sha256="1bv1n68ah714ws58cf285n2s2v5vn7382lfjca4jxph57lyg8hmj"; depends=[]; }; abclass = derive2 { name="abclass"; version="0.4.0"; sha256="1cg8xfzxya585wzk6y2kf4flgjxlspzqqqksbig8nlxmwxxj413p"; depends=[Rcpp RcppArmadillo]; }; @@ -5914,7 +6018,6 @@ in with self; { abjData = derive2 { name="abjData"; version="1.1.2"; sha256="0q7l9lxm41pjkdv98axx87wcxjxfyccfwi2k1b29g07pfjszs0hv"; depends=[]; }; abjutils = derive2 { name="abjutils"; version="0.3.2"; sha256="0lmf4va8qnzwg698i2h4fcwvd6dhsgdkqsfh41aa3wg1flimhsr7"; depends=[dplyr magrittr purrr rlang rstudioapi stringi stringr tidyr]; }; abmR = derive2 { name="abmR"; version="1.0.10"; sha256="0klfrclmwxsqm3aazs9jlw8mh5rzcsvm2wjk2r1ycx76kvkx8wii"; depends=[geosphere ggplot2 googledrive gstat gtsummary kableExtra maps purrr raster rnaturalearth sf sp swfscMisc table1 tmap]; }; - abn = derive2 { name="abn"; version="3.0.1"; sha256="03g02450l3mckjzwd0w717dbmxhrngkwlfhm5c9q5zv4g10df7nj"; depends=[doParallel foreach graph lme4 mclogit nnet Rcpp RcppArmadillo Rgraphviz rjags stringi]; }; abnormality = derive2 { name="abnormality"; version="0.1.0"; sha256="1fzfskl9akl06nliy8hkv2a0pznpj8pwcypg3gj5r2nzvr3kan9v"; depends=[MASS Matrix]; }; abodOutlier = derive2 { name="abodOutlier"; version="0.1"; sha256="1pvhgxmh23br84r0fbmv7g53z2427birdja96a67vqgz18r3fdvj"; depends=[cluster]; }; abseil = derive2 { name="abseil"; version="2023.8.2.1"; sha256="1a65zwkrxqidbcfpin9k119zip8vb0vnl87akimjn3xnynb3i5br"; depends=[]; }; @@ -5931,6 +6034,7 @@ in with self; { accept = derive2 { name="accept"; version="1.0.0"; sha256="0yjihmgi94yfwhnvgw4v235yyr8n6w1ass2qbmvk0ia1hmjis8zq"; depends=[dplyr reldist]; }; accessibility = derive2 { name="accessibility"; version="1.3.0"; sha256="1jbfzw2p6a9wqd4qs06nnnkfzpwlkhsaay3nyx8a0xqjrncwv12l"; depends=[checkmate data_table Hmisc Rdpack]; }; accessrmd = derive2 { name="accessrmd"; version="1.0.0"; sha256="1jdbbsi8nzvr8hnrpw5sr8zf55irnwwrnkwx4vd0zx84bxvw3bqy"; depends=[ggplot2 htmltools knitr RCurl rlist stringr]; }; + accrual = derive2 { name="accrual"; version="1.4"; sha256="0dygp8xar6dqx822ghjqvi8c597xjb7bqn57475fs4nw5zz709lk"; depends=[fgui SMPracticals tcltk2]; }; accrualPlot = derive2 { name="accrualPlot"; version="1.0.7"; sha256="1xd855yzr405kl6qqm68zgcj3j112xmpkx0f1z8gd9z7s3sr74h0"; depends=[dplyr ggplot2 lubridate magrittr purrr rlang]; }; accucor = derive2 { name="accucor"; version="0.3.1"; sha256="1yq64hh7w328ks02fh9q2hnl73grwd31rrm6c0jqyb0f0lclkxir"; depends=[CHNOSZ dplyr nnls readr readxl rlang stringr tibble writexl]; }; accumulate = derive2 { name="accumulate"; version="0.9.3"; sha256="0c2iiliqpyblfdz189d06ljbbp0hyadhgr7hrzm0wfcm8245njah"; depends=[]; }; @@ -5946,31 +6050,32 @@ in with self; { acnr = derive2 { name="acnr"; version="1.0.0"; sha256="087hq4i7jp67ba2finzsqjfnqbiprl33na6ryjv9zqzsdawj9cym"; depends=[]; }; acopula = derive2 { name="acopula"; version="0.9.4"; sha256="0asxfcjrsr9d7ab59pdajs0zvdjgwfswk9rdlpfdr51535wpjrfy"; depends=[]; }; acp = derive2 { name="acp"; version="2.1"; sha256="0lcwbjcyyr32m6qjmjqh25qjwrbyqj1n092xhgbhxzd8fslppnmn"; depends=[quantmod tseries]; }; + acro = derive2 { name="acro"; version="0.1.1"; sha256="1jfrv7v7mh0laiiffgcnk0sm3kkan4ycfhnb0r43dc5mrckvk7ml"; depends=[admiraldev png reticulate]; }; acroname = derive2 { name="acroname"; version="0.1.0"; sha256="0fff7z3i8h30v7bsyq240h8ws5ld04n6c5r2iizd2icp8dk9xs9x"; depends=[dplyr hunspell magrittr purrr R_utils readr stringr]; }; acs = derive2 { name="acs"; version="2.1.4"; sha256="0ajw9rf8l8akcvgqvbxjvryc6wjx74521xyxswz2b0bky3m6kah5"; depends=[httr plyr stringr XML]; }; acss = derive2 { name="acss"; version="0.2-5"; sha256="0cqa60544f58l5qd7h6xmsir40b9hqnq6pqgd5hfx2j2l5n7qhmk"; depends=[acss_data zoo]; }; acss_data = derive2 { name="acss.data"; version="1.0"; sha256="09kl4179ipr8bq19g89xcdi1xxs397zcx5cvgp6viy8gn687ilgv"; depends=[]; }; act = derive2 { name="act"; version="1.3.1"; sha256="0c5515mxw2ghdwmnqz1www84v3dn7wlvij47wankb4ak285ak30i"; depends=[openxlsx progress stringi stringr textutils XML xml2]; }; + actLifer = derive2 { name="actLifer"; version="1.0.0"; sha256="1nqlsdywrfvq94zi2xk90m9m768x18fk6p6jrds8mpv63w2y3frc"; depends=[dplyr]; }; actel = derive2 { name="actel"; version="1.3.0"; sha256="0hd1mkshywszswnllcx1lvlghnfk92438r57v6r7w8p5i9m04z9x"; depends=[circular data_table DiagrammeR DiagrammeRsvg fasttime ggplot2 knitr readr reshape2 rmarkdown rsvg scales stringi stringr svglite]; }; actilifecounts = derive2 { name="actilifecounts"; version="1.1.1"; sha256="0p65j7l8d8503nil34faz7jashv5rw327xlpphwhwa4x5wga5z01"; depends=[GGIRread gsignal pracma]; }; - activAnalyzer = derive2 { name="activAnalyzer"; version="2.0.1"; sha256="0dz6r3z8zcsiiqirr1gd97m53afswf1qg6gya6km605my33xn56b"; depends=[dbplyr dplyr flextable forcats ggplot2 golem hms lubridate magrittr modelr patchwork PhysicalActivity plyr reactable rmarkdown RSQLite shiny shinycssloaders shinydashboard shinydashboardPlus shinyFeedback shinyjs stringr tidyr zoo]; }; + activAnalyzer = derive2 { name="activAnalyzer"; version="2.0.2"; sha256="1kvpdhv8rcbxqrdh58ffh0bwwwi5w62r75chm5s7j6358lymiajh"; depends=[dbplyr dplyr flextable forcats ggplot2 golem hms lubridate magrittr modelr patchwork PhysicalActivity plyr reactable rmarkdown RSQLite shiny shinycssloaders shinydashboard shinydashboardPlus shinyFeedback shinyjs stringr tidyr zoo]; }; activPAL = derive2 { name="activPAL"; version="0.1.3"; sha256="1h6hp5z89ji73gdzxy1dgbfwjysiy5lvcqh90xagpb7sa7ahs3na"; depends=[devtools dplyr ggplot2 lubridate magrittr tidyr]; }; activatr = derive2 { name="activatr"; version="0.2.0"; sha256="0d3r9xp7nrva84az3p211f3g995g8p0lz49f6fjlmzd9pc3jzxg9"; depends=[dplyr geosphere ggmap glue httr lubridate rlang slider tibble xml2]; }; activegp = derive2 { name="activegp"; version="1.1.0"; sha256="1yfib5q649kag45ryyqsbq9lq9yd74rrjjk65a6c9rkfa4f6w8xv"; depends=[hetGP lhs MASS numDeriv Rcpp RcppArmadillo RcppProgress]; }; activity = derive2 { name="activity"; version="1.3.4"; sha256="10gp2yvqxz5ysmh5z8qvrpli8kc2kn2z3nd2llfabpyh21476in2"; depends=[pbapply]; }; - activityGCMM = derive2 { name="activityGCMM"; version="1.1.1"; sha256="0r11z61h8fs5dcm3yfr2njbrbh4pv7xlbqx5zngmrknhv407498z"; depends=[circular mclust overlap runjags]; }; actogrammr = derive2 { name="actogrammr"; version="0.2.3"; sha256="1jzvarmd41yqlrkagzlc8m19n5mn0w0b36fy50lyvgrfsafjfbqa"; depends=[dplyr ggplot2 lubridate readr tidyr]; }; actuaRE = derive2 { name="actuaRE"; version="0.1.5"; sha256="02f90vdbfz6shsw4ndhqbqjsrwiwmi1jp66bsl897cb8fnywnzs4"; depends=[cplm data_table ggplot2 knitr lme4 magrittr nlme statmod]; }; - actuar = derive2 { name="actuar"; version="3.3-2"; sha256="0ys7kqqbx9g2mhsn243z9vj7qkdd69d3jy1vin9v8bknwimgdxvb"; depends=[expint]; }; + actuar = derive2 { name="actuar"; version="3.3-4"; sha256="06693w4cwcchi0z64vgg7khc4k4209nw6m2x441nwix4x6rk1zjs"; depends=[expint]; }; actuaryr = derive2 { name="actuaryr"; version="1.1.1"; sha256="08dzn565ax2l2hrn2m32k6magjbskybywl0hsgkg11nrjvkznwnx"; depends=[crayon dplyr lubridate magrittr purrr tibble]; }; - actxps = derive2 { name="actxps"; version="1.3.0"; sha256="1cia0xk2xb09y583za6w97ch3pvx4kcdw5vbx8slvnv2r4qkb1pw"; depends=[dplyr generics ggplot2 glue gt lubridate paletteer purrr readr recipes rlang scales tibble tidyr vctrs]; }; + actxps = derive2 { name="actxps"; version="1.4.0"; sha256="0c0n93zl4ag5mkaw37y2zyg75x9ga4fb5pxz71iidlfj1xblaywa"; depends=[dplyr generics ggplot2 glue gt lubridate paletteer purrr readr recipes rlang scales tibble tidyr vctrs]; }; acumos = derive2 { name="acumos"; version="0.4-4"; sha256="15i4xbcdk5vxjrgac32zh4439v0vmabnw3jvsmxiipap5frp7rpi"; depends=[httr jsonlite RestRserve RProtoBuf Rserve yaml]; }; ada = derive2 { name="ada"; version="2.0-5"; sha256="1h3a07czp0w3hrhjcg1fz721y8vsfclzqi3rq8qfzgpfb4h1f06r"; depends=[rpart]; }; adaHuber = derive2 { name="adaHuber"; version="1.1"; sha256="0giypz04m9anssa2r3hlf95lnj74i3ir48p5j898i2z1gmf8m14w"; depends=[Rcpp RcppArmadillo]; }; - adaR = derive2 { name="adaR"; version="0.3.0"; sha256="1jfr1di0infrqlfjnr8429889pw5pqggpv30g4r910614fk1fzr0"; depends=[Rcpp triebeard]; }; + adaR = derive2 { name="adaR"; version="0.3.1"; sha256="057pynwvs921s2q74rx4cirszbpz1cl15sh07b7sx1l8dj5m88a6"; depends=[Rcpp triebeard]; }; adabag = derive2 { name="adabag"; version="5.0"; sha256="03nnqgia61pavic9l6av0hh81wilxlkrx3g244ypar1fv9ppan7c"; depends=[caret ConsRank doParallel dplyr foreach rpart tidyr]; }; adace = derive2 { name="adace"; version="1.0.2"; sha256="06hfizzaff6fsr8j8bag7avc1inqx2xs52gidacpyahxh6wvj3pz"; depends=[pracma reshape2]; }; - adagio = derive2 { name="adagio"; version="0.8.5"; sha256="0icwr3cark67jyg9zzqwyv9q4fs0j0xgb5i7nkwv9s7y5dlldl0b"; depends=[lpSolve]; }; + adagio = derive2 { name="adagio"; version="0.9.2"; sha256="100mqwlzqml154d0hk7spi4sbwx9y3gh06vkls49kca2q1kf99qz"; depends=[lpSolve]; }; adamethods = derive2 { name="adamethods"; version="1.2.1"; sha256="150awbd3skb1mqca18bqjykhyycqw8crviw66s6qrcnmcsbk77pj"; depends=[Anthropometry archetypes FNN foreach nnls tolerance univOutl]; }; adana = derive2 { name="adana"; version="1.1.0"; sha256="0zi3a17rapc1z074k3yzgjv2b6ba6c9d54b1hm0ivvgfd335981f"; depends=[optimx ROI ROI_plugin_optimx]; }; adapt4pv = derive2 { name="adapt4pv"; version="0.2-3"; sha256="05z3dwcx7pyysf0ghz8m6ij3lj53qkqll50b0gd2yi7ffp9m9601"; depends=[doParallel foreach glmnet Matrix speedglm xgboost]; }; @@ -5981,11 +6086,13 @@ in with self; { adaptTest = derive2 { name="adaptTest"; version="1.2"; sha256="0wb21mac5h683qgjdic29kpncr22ri93iwq8w4b7hywaxkv0zj2p"; depends=[lattice]; }; adaptalint = derive2 { name="adaptalint"; version="0.2.4"; sha256="15qdcvnnbgcps8j5k79354wsc9alswijv8lcafg2i3lghaw536yf"; depends=[dplyr lintr purrr]; }; adaptiveGPCA = derive2 { name="adaptiveGPCA"; version="0.1.3"; sha256="1766b3d9ysa9axfxqwy6gzj0z8hsl34pic6l63nbidqas55vnjqa"; depends=[ape ggplot2 phyloseq shiny]; }; - adaptivetau = derive2 { name="adaptivetau"; version="2.2-3"; sha256="1jficl4yidix35q8yqs3pcv813wq3pg4hpw4ah4dprvg95bl7wwx"; depends=[]; }; + adaptivetau = derive2 { name="adaptivetau"; version="2.3"; sha256="1m82nibsrkwqvc0aq9yrzakpa7k663i1gbis6ikvs7dfxf9mpijx"; depends=[]; }; adaptr = derive2 { name="adaptr"; version="1.3.2"; sha256="1kqxlqxbcvx8fy0cdihcl9sxj5y52dkjpymjbdzbrzx3dyq6kmlw"; depends=[]; }; adaptsmoFMRI = derive2 { name="adaptsmoFMRI"; version="1.2"; sha256="00npcl2js9vj5r3l66cp5d2l807klia581pig1gsyjjq4rvmfa7v"; depends=[coda Matrix MCMCpack mvtnorm spatstat spatstat_geom]; }; - adbcdrivermanager = derive2 { name="adbcdrivermanager"; version="0.7.0.1"; sha256="0qg6jjxn4jp4629xsxd47f5y6n9x5wj6jypdapl9g9dn2ackydqd"; depends=[nanoarrow]; }; - adbcsqlite = derive2 { name="adbcsqlite"; version="0.7.0.1"; sha256="0pzpx1fajp8h6pmg6bzsg4gpdmqwqh03ngf3kvq3g293z9ck7xm1"; depends=[adbcdrivermanager]; }; + adbcdrivermanager = derive2 { name="adbcdrivermanager"; version="0.8.0"; sha256="0agi2wy00ssi6p1k0gb3b7gm7cbp6qx746sysnvyglkxwjpydmb2"; depends=[nanoarrow]; }; + adbcpostgresql = derive2 { name="adbcpostgresql"; version="0.8.0.1"; sha256="1hrd385fkjdbxkvzsrbp30llcrd1ny58ykv2m4y48bshi0753sx4"; depends=[adbcdrivermanager]; }; + adbcsqlite = derive2 { name="adbcsqlite"; version="0.8.0"; sha256="1a9mpdcyz9bihkv308vf1ramw4097jyabmwh26572bl0mwjq6a63"; depends=[adbcdrivermanager]; }; + adbi = derive2 { name="adbi"; version="0.1.0"; sha256="05cgkxjcgrcvmq7h5am5zxr32s7narar7f612by246fbhxlkv2s7"; depends=[adbcdrivermanager DBI nanoarrow]; }; adc = derive2 { name="adc"; version="1.0.0"; sha256="152j863rfrmjpaambxy6hc57zcpp0wlyd6kl7miryk3z0yvngcw9"; depends=[runner]; }; add2ggplot = derive2 { name="add2ggplot"; version="0.3.0"; sha256="0c94i1cfp2pvplvxmfvvz2fyj026r1jnax05mrzrc7ppnqzy25y0"; depends=[ggplot2 magick magrittr RColorBrewer zeallot]; }; addScales = derive2 { name="addScales"; version="1.0-1"; sha256="1bw4ljyyswdhqyir9i6lj0mg9lm6ry4zpqp2h6w2bpk37rvs1w38"; depends=[lattice]; }; @@ -6000,7 +6107,7 @@ in with self; { addreg = derive2 { name="addreg"; version="3.0"; sha256="13bwmgxylwi02g60j1rr51cr5jvvkl2nvf2lnnhnq46fhvs2ma7s"; depends=[combinat glm2 turboEM]; }; ade4 = derive2 { name="ade4"; version="1.7-22"; sha256="1d4knc1c1hha4gwcakbllzmff4g0mh56y058dn6wp9m2hd7gaz80"; depends=[MASS pixmap Rcpp RcppArmadillo sp]; }; ade4TkGUI = derive2 { name="ade4TkGUI"; version="0.3-1"; sha256="1y0f62n8iv002ayd1nyl3bmszw558niwnfzjpvk0a7cbvfdyvwcg"; depends=[ade4 adegraphics lattice]; }; - adea = derive2 { name="adea"; version="1.3.1"; sha256="0jvxgqwfga4gsn5jcdklfq2qci3xyvmkdfjappjwf72swb2rkv0n"; depends=[Benchmarking combinat knitr lpSolveAPI rmarkdown]; }; + adea = derive2 { name="adea"; version="1.5.1"; sha256="0wjklmd1r5vhp32syn9dpn5j05y9nfb0c8cnrdc2xcdsi8dzdkap"; depends=[combinat knitr lpSolveAPI parallelly rmarkdown ROI ROI_plugin_glpk ROI_plugin_lpsolve ROI_plugin_symphony slam]; }; adegenet = derive2 { name="adegenet"; version="2.1.10"; sha256="0qxig2jyj1q0a8pwpv5f5v5b4x4af8s9p1p0yc0msmyxq457hqmb"; depends=[ade4 ape boot dplyr ggplot2 igraph MASS reshape2 seqinr shiny vegan]; }; adegraphics = derive2 { name="adegraphics"; version="1.0-21"; sha256="1a7bz9j06sc09kvynzss71dxffp40vsl35azj0gzs81jl2rr4ap0"; depends=[ade4 KernSmooth lattice latticeExtra RColorBrewer sp]; }; adehabitatHR = derive2 { name="adehabitatHR"; version="0.4.21"; sha256="0ji4a27z5qsi8xpzlx9z8m9hg9k81bb6mkbwzpsinsn1x1dipg0n"; depends=[ade4 adehabitatLT adehabitatMA sp]; }; @@ -6025,25 +6132,29 @@ in with self; { adjustedcranlogs = derive2 { name="adjustedcranlogs"; version="0.1.0"; sha256="08apfvpqvnnalx230p4qf5ckrwm1sgzras4zfrysgym5d4map9ci"; depends=[cranlogs dplyr lubridate rvest xml2]; }; adklakedata = derive2 { name="adklakedata"; version="0.6.1"; sha256="1lzj3ib4bgfkq5lq12n47pwc52h7k35xbbwj6brwsgx1gd4fx3x6"; depends=[httr rappdirs]; }; adlift = derive2 { name="adlift"; version="1.4-5"; sha256="0kf1akx5c4c7mdy9ysfdik2xi810jcysw9ynmvxlgw2zykqxvqdk"; depends=[EbayesThresh]; }; - admiral = derive2 { name="admiral"; version="0.12.3"; sha256="0b4sgk4h9gnrvcml264aibhkwsd9wzki6r302fi7lm9zxk6gf4q4"; depends=[admiraldev dplyr hms lifecycle lubridate magrittr purrr rlang stringr tidyr tidyselect]; }; + admiral = derive2 { name="admiral"; version="1.0.0"; sha256="0qyvp2q5x0zhb3gq5ycx635ikpmrq6chj73ikgw59cc9jlbyx097"; depends=[admiraldev dplyr hms lifecycle lubridate magrittr purrr rlang stringr tidyr tidyselect]; }; admiral_test = derive2 { name="admiral.test"; version="0.7.0"; sha256="1bmzj9r6nbyk4wd63ps6qwrj35lpj4s4jj4dvlg0p7yyssig68pb"; depends=[]; }; - admiraldev = derive2 { name="admiraldev"; version="0.5.0"; sha256="0h4qd7w5icmiw3dgcwmf8mp0lvbc06wcszc8859kv6l6zsihgnfd"; depends=[dplyr hms lifecycle lubridate magrittr purrr rlang stringr tidyr tidyselect]; }; - admiralonco = derive2 { name="admiralonco"; version="0.5.0"; sha256="1gi9dirx004iy0vs7mms9y1vrs9zjiai7jh76nv0xm3cwgdf5l15"; depends=[admiral admiraldev dplyr lifecycle lubridate magrittr rlang tidyselect]; }; - admiralophtha = derive2 { name="admiralophtha"; version="0.3.0"; sha256="09hjnhfafsnh4dpyhzk09d8v1pliy6h3bdvk7bkaf5jizrna8dix"; depends=[admiral admiraldev dplyr hms lifecycle lubridate magrittr purrr rlang stringr tidyr tidyselect]; }; - admiralvaccine = derive2 { name="admiralvaccine"; version="0.1.0"; sha256="0iwgglk0bz760898gpmw6wn745j5rk8b6zz4psdycik0vsamijp3"; depends=[admiral admiraldev assertthat dplyr hms lifecycle lubridate magrittr metatools purrr rlang stringr tidyr tidyselect]; }; - admisc = derive2 { name="admisc"; version="0.33"; sha256="1anvh581jh1mw3yhpbm2dyihs9npi9gd0isgkphw5gr64fivw49r"; depends=[]; }; + admiraldev = derive2 { name="admiraldev"; version="1.0.0"; sha256="0n944il50mlqwclb6251zck89l9fyki7j711h4pp4fba3hs96s7r"; depends=[dplyr hms lifecycle lubridate magrittr purrr rlang stringr tidyr tidyselect]; }; + admiralonco = derive2 { name="admiralonco"; version="1.0.0"; sha256="03q02l4abrcgpg17cyfq2vhzinlywm0ir6wqx2ch43d3agzyypzy"; depends=[admiral admiraldev dplyr lifecycle lubridate magrittr rlang tidyselect]; }; + admiralophtha = derive2 { name="admiralophtha"; version="1.0.0"; sha256="0ip69mishnx8yllfp2vm2qsa5917hwi974lr8qwil9xx6d2hgbkz"; depends=[admiral admiraldev dplyr hms lifecycle lubridate magrittr purrr rlang stringr tidyr tidyselect]; }; + admiralvaccine = derive2 { name="admiralvaccine"; version="0.2.0"; sha256="0asi4939k50y05f1klga4i8wyw4hxlczsz3sg3as39pdsp6zzn48"; depends=[admiral admiraldev assertthat dplyr hms lifecycle lubridate magrittr metatools purrr rlang stringr tidyr tidyselect]; }; + admisc = derive2 { name="admisc"; version="0.34"; sha256="1psvi8hb7j65abw8g4ya9r43r5kd9mcv478pg2d09za0cig8gkzx"; depends=[]; }; admix = derive2 { name="admix"; version="2.1-2"; sha256="1g6s2ll31g8klxmg6zg7scy5l84bqzc3ncjsbw8zxrbrjzyd2yzx"; depends=[cubature fdrtool Iso MASS orthopolynom pracma Rcpp]; }; admixr = derive2 { name="admixr"; version="0.9.1"; sha256="0wszpzs53cbnha13g2ldpq6z5ndw2v2xgrzadqkjm3hsp6akv4bl"; depends=[dplyr magrittr readr rlang stringr tibble]; }; admmDensestSubmatrix = derive2 { name="admmDensestSubmatrix"; version="0.1.0"; sha256="1a5lfm10aj6wdjibdnmffn75zvy6x69w8nqcx2i23gxg6v0xlqcl"; depends=[Rdpack]; }; + admtools = derive2 { name="admtools"; version="0.1.0"; sha256="0pnmzkln92dqfjyx8rvs37845anpasfzk0xkqwmpb6w4bghjgywp"; depends=[]; }; adnuts = derive2 { name="adnuts"; version="1.1.2"; sha256="0nkciv5sfj3bws6kpgrnaq4ziasibaz44w64mb86zmr8420nyc1q"; depends=[ellipse ggplot2 R2admb rlang rstan snowfall]; }; - adobeanalyticsr = derive2 { name="adobeanalyticsr"; version="0.3.3"; sha256="1x1mkprp42xyfgiyffkj9lwzfv79dfwdg9alxfcpmgcvcrnbxcwi"; depends=[assertthat dplyr ggplot2 glue httr jose jsonlite lifecycle lubridate memoise openssl progress purrr R6 rlang scales stringr tibble tidyr vctrs]; }; + adobeanalyticsr = derive2 { name="adobeanalyticsr"; version="0.4.0"; sha256="1cbr86ssnd0bl6pvqziz16nvh3gzmd170pkk8wr2rkhm0rryh2l4"; depends=[assertthat dplyr ggplot2 glue httr jose jsonlite lifecycle lubridate memoise openssl progress purrr R6 rlang scales stringr tidyr vctrs]; }; + adproclus = derive2 { name="adproclus"; version="1.0.2"; sha256="1aj9bb86fmgq6ln39pmkws0bp07wf02k3fahgsv3hq86yflgac8q"; depends=[checkmate corrplot gtools igraph NMFN qgraph withr]; }; adpss = derive2 { name="adpss"; version="0.1.2"; sha256="1nk12yn1n483scnphf8pab8w633dk64c8n17zlq851zywbncs0gk"; depends=[Rcpp]; }; - ads = derive2 { name="ads"; version="1.5-9"; sha256="1zipffv20d83aqrxn9fwavn2hf6qix20ffy8l8mgmg2sckfgfb34"; depends=[ade4 spatstat_geom]; }; + ads = derive2 { name="ads"; version="1.5-10"; sha256="0arxwjy13fijf5w5491hyr7l4cbmp83aa4hckjxx43zbrdyvvrpz"; depends=[ade4 spatstat_geom]; }; adsDataHubR = derive2 { name="adsDataHubR"; version="0.1.1"; sha256="19csivbg3f0g2r11l7jrciqq2lhg50km7qv29xfs6ba5cf678hb9"; depends=[httr jsonlite lubridate]; }; adventr = derive2 { name="adventr"; version="0.1.8"; sha256="0nja1a2xhaimz1fg2bb838x9a37sswjqjc68mp59gbdwkfpdii37"; depends=[BayesFactor boot car dplyr effects effsize forcats GGally ggplot2 Hmisc learnr lm_beta nlme readr robust sandwich sjstats tidyr WRS2]; }; adw = derive2 { name="adw"; version="0.3.1"; sha256="00f4z7h4y1gmy9smxy8jwnr4alw641i1lmx4dyjk39jzzrx9fz1d"; depends=[sf terra]; }; adwave = derive2 { name="adwave"; version="1.3"; sha256="11iy50ng0zxvwsvdsvx262j8zgqaai308lp5is47az7xzvk57mx7"; depends=[waveslim]; }; adwordsR = derive2 { name="adwordsR"; version="0.3.1"; sha256="1w5qg4psm8pj89f09pz7in8zkafaimik1n6hx29y55jpmbxbk2gn"; depends=[RCurl rjson]; }; + aeddo = derive2 { name="aeddo"; version="0.1.1"; sha256="005l1cxpk30m1krdkrr62i7d1gp8j1v5f9r8j81v6r3w3iwzr449"; depends=[checkmate dplyr ggplot2 lifecycle magrittr purrr rlang tibble tidyr]; }; + aedseo = derive2 { name="aedseo"; version="0.1.2"; sha256="1sy3j78lawa10rf22fa3wsbal2mv64hs1k5v7yqf9hx11jib26sz"; depends=[dplyr ggplot2 lifecycle magrittr purrr rlang tibble]; }; afc = derive2 { name="afc"; version="1.4.0"; sha256="1iy1wa88kf6zi6x7lbd0jdir653cvzvdraliqpxbac413wwb5gwl"; depends=[]; }; afcolours = derive2 { name="afcolours"; version="1.0.0"; sha256="04hmkcn4zmcp34mwav0wngld45a3pyrdb4cmnwg5ba7i0jk4z91y"; depends=[dplyr]; }; afdx = derive2 { name="afdx"; version="1.1.1"; sha256="1654vxakdd11b5zhwy1vcv127xk5rifan6fs1k6w1qsk74j4drqv"; depends=[dplyr magrittr maxLik tidyr]; }; @@ -6052,12 +6163,12 @@ in with self; { affinitymatrix = derive2 { name="affinitymatrix"; version="0.1.0"; sha256="10i7wzl4xiphj5f466ga7c4ha3mkyqn63x1z0jyx50m0b84sggq1"; depends=[expm ggplot2 ggrepel Hmisc MASS]; }; affluenceIndex = derive2 { name="affluenceIndex"; version="2.1"; sha256="0vcg4gphs0yxdxsgw7kj9r3hvjpfs2z8sjvllvfw9ki3y7jy5jb8"; depends=[spatstat spatstat_geom]; }; afmToolkit = derive2 { name="afmToolkit"; version="0.0.1"; sha256="1pm3xyh9vq10mmfgknlvlfr9f027xprrgy1dvbbxpi7f111hv1gl"; depends=[assertthat DBI dplyr ggplot2 gridExtra minpack_lm scales tibble]; }; - afpt = derive2 { name="afpt"; version="1.1.0.3"; sha256="18izncbr3ljckil97xx2w1y0y7qjykp06wm0ap8ismahqvia3xz3"; depends=[]; }; + afpt = derive2 { name="afpt"; version="1.1.0.4"; sha256="15pa4p78p6r478l05481lzx6z4ahswj728s1sb3xp3pvn6rv4jfj"; depends=[]; }; africamonitor = derive2 { name="africamonitor"; version="0.2.3"; sha256="13pwrbz0ap13a4di3zc1z5j4jk4q9vcpn4g8n41nyminbsg1vl5j"; depends=[collapse data_table DBI RMySQL]; }; aftR2 = derive2 { name="aftR2"; version="0.1.0"; sha256="1ff8khq9b8hjflkhfc1shx5k7sadcl0ahnsbx9c557b6sm0kqfr6"; depends=[survival]; }; aftgee = derive2 { name="aftgee"; version="1.2.0"; sha256="01mjgahs6wfd47imnw0zni57ilcy76gh5lpsihxyd3grwd9jkki7"; depends=[BB geepack MASS Rcpp RcppArmadillo survival]; }; afthd = derive2 { name="afthd"; version="1.1.0"; sha256="0gg2cp3sj28f3pi5rqh737hna3imwarwas01jacm0m2h27587k7y"; depends=[glmnet photobiology R2jags rstpm2 survival]; }; - afttest = derive2 { name="afttest"; version="4.3.1.1"; sha256="0w08xhhjnsf4xdg52nfz1ks4n7mbajrnbix9q5mkd3nvsnlank0s"; depends=[aftgee ggplot2 gridExtra Rcpp RcppArmadillo survival]; }; + afttest = derive2 { name="afttest"; version="4.3.2.1"; sha256="0ndy0hclrahrjb1rizz2z3z0mp44kr4jb6rv3m3n6nj5zrp0vmy8"; depends=[aftgee ggplot2 gridExtra Rcpp RcppArmadillo survival]; }; ag5Tools = derive2 { name="ag5Tools"; version="0.0.2"; sha256="0kqya0iaxcz7m1i69ckcm0z3g3q31x2jasxlip7jpp7czdi9rr07"; depends=[doParallel foreach fs reticulate terra]; }; agRee = derive2 { name="agRee"; version="0.5-3"; sha256="1wi8jn14kpsj5z49my6fz8j6zxysddxm8svw86cnzsmnbj6mzq7x"; depends=[coda lme4 miscF R2jags]; }; ageg = derive2 { name="ageg"; version="1.0.0"; sha256="0dcmwgznxf1jjsifpm3nn3jk25mm27l6f6f6jfi2n3crxgqfizyv"; depends=[]; }; @@ -6070,7 +6181,7 @@ in with self; { aggutils = derive2 { name="aggutils"; version="1.0.2"; sha256="0q4ly4wra1nj6zn733a0kvikcbjijailrbiyljyiz61ax4w0v5g6"; depends=[docstring]; }; aghq = derive2 { name="aghq"; version="0.4.1"; sha256="0hrgxxqzx38r2cfn3rflh8gddva9i6i89vk3jg4g27ywg5v7s41v"; depends=[Matrix mvQuad numDeriv polynom rlang]; }; aglm = derive2 { name="aglm"; version="0.4.0"; sha256="0rcyrzfi3l1k53c9qs1gfrcflnhdnri9sq6py8s6fw4wcn55kf67"; depends=[assertthat glmnet mathjaxr]; }; - agop = derive2 { name="agop"; version="0.2-3"; sha256="1z90a07wzn5z4cbafwpfh3l3v1bgq9g89qbdjm51f78zynnb27dk"; depends=[]; }; + agop = derive2 { name="agop"; version="0.2.4"; sha256="1bvmwic2xjl36i994pzc0hhl3k2ghxivrq9i96ykxmklp9drlb7j"; depends=[]; }; agriTutorial = derive2 { name="agriTutorial"; version="0.1.5"; sha256="0c0p0bqcrnx34q5brnvgq10wkzahvgyybaz2xfmcghbdvzahd2dx"; depends=[emmeans ggplot2 lattice lmerTest nlme pbkrtest]; }; agricolae = derive2 { name="agricolae"; version="1.3-7"; sha256="0zaanfhvlx7c0s9y550hqn9bsffbykchcd7940fxx69jw87fkbf5"; depends=[AlgDesign cluster MASS nlme]; }; agricolaeplotr = derive2 { name="agricolaeplotr"; version="0.3.1"; sha256="1z1p6f4xwky9mglm5bdpvzp3na4wkal6kvf2xscyrcm9slasxvay"; depends=[agricolae FielDHub ggplot2 raster sp]; }; @@ -6078,7 +6189,7 @@ in with self; { agrifeature = derive2 { name="agrifeature"; version="1.0.3"; sha256="0zbjmgwajwihgvs1c3swddx09m6954sihnpjdrqlgl5jhh7q2bgs"; depends=[]; }; agriutilities = derive2 { name="agriutilities"; version="1.1.0"; sha256="1ynd3cy9ak6ns8vzknz790q4pz63gbj4v9992p3igihw56vx9znn"; depends=[data_table dplyr emmeans ggplot2 ggpubr ggrepel lme4 lmerTest magrittr Matrix psych rlang SpATS statgenSTA tibble tidyr]; }; agriwater = derive2 { name="agriwater"; version="1.0.2"; sha256="14zwpbr9wivnafdrfihvdmbv66cxprz41xgqyifc1nsmgrbr67cz"; depends=[terra]; }; - agrmt = derive2 { name="agrmt"; version="1.42.8"; sha256="1czxcyqrmcpjh4h77p9c6gb63aj0mi1b8cdxp3q6r0k7dy8db7ad"; depends=[]; }; + agrmt = derive2 { name="agrmt"; version="1.42.12"; sha256="04bq0ya6nxz97bzcclby1rhhz7fdgkh73lmzlpzfnfnfmwjbd2hd"; depends=[]; }; agrostab = derive2 { name="agrostab"; version="0.1.0"; sha256="0mcskv3144j594wqljzn5pwbhkxh6sb76b1c2wabzjvi61zrapiv"; depends=[dplyr ggplot2 rlang]; }; ags = derive2 { name="ags"; version="1.0.1"; sha256="1g2q5cbpa0iwkwhcng15vqn8jgx5lingjfwakj320jr76x9bx6my"; depends=[dplyr rlang stringr]; }; agtboost = derive2 { name="agtboost"; version="0.9.3"; sha256="1z2ys4cn859vas3q1if50k46cryn7wwy1pjqbc8n9dhdn5zxn3sk"; depends=[Rcpp RcppEigen]; }; @@ -6093,16 +6204,17 @@ in with self; { aiRly = derive2 { name="aiRly"; version="0.1.0"; sha256="0d3w5dwk0b3pd49zw2005rili4p3l1i3x4hzp8cf6rljr86x01cy"; depends=[httr jsonlite reshape2 tibble]; }; aiRthermo = derive2 { name="aiRthermo"; version="1.2.1"; sha256="058082qdfi1pbdgf26vbfahri1kbc8b2l816q4dq89j5aj5is0a2"; depends=[]; }; aidar = derive2 { name="aidar"; version="1.0.5"; sha256="1q2iz2qzh2yl0v0sc537xq4vbx2nblym3kv419vr7jvrghdpx3vj"; depends=[XML]; }; - aides = derive2 { name="aides"; version="1.1.0"; sha256="0yqn15ddwq3mvssfkl0sac2scj3j9ghr47r1q3afvmas00p095qg"; depends=[boot meta]; }; + aides = derive2 { name="aides"; version="1.3.0"; sha256="0yvvyj64hibd9710v1fg663mmib91r75qmvbshx5q2kznlji8q2c"; depends=[boot meta]; }; aifeducation = derive2 { name="aifeducation"; version="0.3.0"; sha256="0lxnpq6ais28gmps01q41b8nhkz7kmv3wxzm3llf51490798hv83"; depends=[abind doParallel foreach iotarelr irr irrCAC Rcpp RcppArmadillo reshape2 reticulate smotefamily stringr]; }; aihuman = derive2 { name="aihuman"; version="0.1.0"; sha256="0isd6j3qfhl9dfcknzsfyipvvni7bw6cpdkk4v5azpi3mcixbq4n"; depends=[abind coda doParallel dplyr foreach ggplot2 lme4 magrittr MASS metR purrr Rcpp RcppArmadillo RcppEigen tidyr]; }; aimPlot = derive2 { name="aimPlot"; version="1.0.0"; sha256="1d52b7kccxba6j7n0gbd7pzs0p87zn32vv8gdf2f7lyr75qzgz7x"; depends=[ggplot2]; }; aimsir17 = derive2 { name="aimsir17"; version="0.0.2"; sha256="0v804maqaygqhw3y9wqap3h9vvjniqnnbsv1psjj500r2yscicxs"; depends=[tibble]; }; - aion = derive2 { name="aion"; version="1.0.1"; sha256="0m6l67nhip8ln875cxsbjghk27p890yb9xs5v18mrg5gjnjgmas7"; depends=[arkhe]; }; - airGR = derive2 { name="airGR"; version="1.7.4"; sha256="1klf064lm6iyvlmy89amf097yvcyqsz9m2h6mjxqv6n737bvlzfa"; depends=[]; }; + aion = derive2 { name="aion"; version="1.0.2"; sha256="01h7w39gz03wydxsk2ikikbhi9nw46qq2wl3nksvi91zydyls5zf"; depends=[arkhe]; }; + air = derive2 { name="air"; version="0.2.2"; sha256="0r54kq6iiad3g07sz69napw5qx6qp9sx2qp6jy7frynh8s60bss9"; depends=[httr keyring rjson]; }; + airGR = derive2 { name="airGR"; version="1.7.6"; sha256="0kxa3p659sh72x54qhbxr4ni781czj4g2k6x3zs30y2zgmljrwqa"; depends=[]; }; airGRdatasets = derive2 { name="airGRdatasets"; version="0.2.1"; sha256="05059ylizjlb90yqllkw7c0gm8nx1a42mw0334zkm9xpgzsis8cb"; depends=[]; }; airGRdatassim = derive2 { name="airGRdatassim"; version="0.1.3"; sha256="05c108rcj4rlzrbabai95abxhyjsrrrsgvds4zamvyzpjl64f9ps"; depends=[airGR]; }; - airGRiwrm = derive2 { name="airGRiwrm"; version="0.6.1"; sha256="1dr7xg8a6xfdihmf4x03wm268iz78lks15fx9hmpw6sp15xv5kdj"; depends=[airGR DiagrammeR dplyr]; }; + airGRiwrm = derive2 { name="airGRiwrm"; version="0.6.2"; sha256="09hcs5qhs3mykdarznqwiqd2vjdc5fqmp8lvfpmf4s2b3yqvydax"; depends=[airGR DiagrammeR dplyr]; }; airGRteaching = derive2 { name="airGRteaching"; version="0.3.2"; sha256="1lhzvhhrylp1c2znrz9b1vni9mqc6kkl7bjc6p3kjwph1vw9ka72"; depends=[airGR dygraphs markdown plotrix shiny shinyjs xts]; }; aire_zmvm = derive2 { name="aire.zmvm"; version="0.8.2"; sha256="0z9knqdl7ihx2vph154qi1lh4s6yvlcw6kwry8k47mhh3p7pynsd"; depends=[dplyr httr lubridate progress readr readxl rvest sp stringr tidyr xml2]; }; airnow = derive2 { name="airnow"; version="0.1.0"; sha256="0dpx2hkh0y6769pi8xzyi327lygxysckqz85z40ps50ghw02r8bh"; depends=[cli glue httr2 jsonlite lifecycle rlang tibble]; }; @@ -6119,14 +6231,14 @@ in with self; { akmbiclust = derive2 { name="akmbiclust"; version="0.1.0"; sha256="19dj12vlry6f3agzrnshx2c4rpa2h7dlx2138r49jjy9sm48pyfw"; depends=[]; }; alabama = derive2 { name="alabama"; version="2023.1.0"; sha256="075zqyarb970d4zpxsivaxhnmdg916ypfxrp0mqngnww5p3nfpwj"; depends=[numDeriv]; }; alakazam = derive2 { name="alakazam"; version="1.3.0"; sha256="01alngdynigvycmpqa71ccndw6v91hmrs3c2ah0r148rxdgbw58v"; depends=[airr ape Biostrings dplyr GenomicAlignments ggplot2 igraph IRanges Matrix progress Rcpp readr rlang scales seqinr stringi tibble tidyr]; }; - albatross = derive2 { name="albatross"; version="0.3-6"; sha256="0n4ndaa3a57k698xjrvgq091l6pvpgcmqan52g30la2qsrr109d5"; depends=[CMLS lattice Matrix multiway pracma]; }; + albatross = derive2 { name="albatross"; version="0.3-7"; sha256="0hs5i4wzm4kf7k9x4a5l18h1gx0zdq33fi21571x48bi5ic1294w"; depends=[CMLS lattice Matrix multiway pracma]; }; albopictus = derive2 { name="albopictus"; version="0.5"; sha256="0kw1agm9jqi9wl5zbx8bryngy751g3sih36rgbrx0m2170cy42d9"; depends=[]; }; ald = derive2 { name="ald"; version="1.3.1"; sha256="12nf9vakayw24clrg56fh9x85kg277iricbs8ymahkjqjnc1p3cz"; depends=[]; }; - aldvmm = derive2 { name="aldvmm"; version="0.8.7"; sha256="1v3qbk4pm8lk37bjkzcfn8rlcszxix690mjrf5k5w8kk7r6i8zpc"; depends=[checkmate Formula lmtest numDeriv optimr sandwich]; }; + aldvmm = derive2 { name="aldvmm"; version="0.8.8"; sha256="1qqfhfrhqlzlmfdf84sq9v17d6jrnn4w7yilskbrg74zvbcbc3k8"; depends=[checkmate Formula lmtest numDeriv optimx sandwich]; }; ale = derive2 { name="ale"; version="0.2.0"; sha256="0h06vr023qv4s55yvn4ffgg4g3f6d8y4yv3391lpi6y5j1cnlfmi"; depends=[assertthat broom dplyr ellipsis ggplot2 labeling purrr stringr tidyr yaImpute]; }; alfr = derive2 { name="alfr"; version="1.2.1"; sha256="1ldq8gvgqjjabn86hdqb6hxch8x4hvr6djv5ly4mx039dipc8jxi"; depends=[httr jsonlite magrittr stringr]; }; alfred = derive2 { name="alfred"; version="0.2.1"; sha256="0xgqzn750c4f13w2h8j2xj53sx0dij56164svw01nbvns4n0yvv8"; depends=[dplyr httr jsonlite lubridate magrittr rlang tibble tidyr tidyselect]; }; - algaeClassify = derive2 { name="algaeClassify"; version="1.3.2"; sha256="1ggxyj79ddc3c0q3fn1dbx5rmvq5jqrza9dzswwb9sfpfb8acdfh"; depends=[lubridate]; }; + algaeClassify = derive2 { name="algaeClassify"; version="2.0.1"; sha256="0n5ssd77gqzs9316zqshzq2k03g9q83i2z8vswk8wiiifn21d0a4"; depends=[curl jsonlite lubridate ritis taxize]; }; algo = derive2 { name="algo"; version="0.1.0"; sha256="1g18p8jyj9crkqm16y2im3r9xzqwa36javv4vi1wvsqkg31d81si"; depends=[glue htmltools jsonlite]; }; algorithmia = derive2 { name="algorithmia"; version="0.3.0"; sha256="1ccmcsyxncyv8k0fjvr5y44amygqi7qx2dy6rsy3a5pw281hllr4"; depends=[base64enc httr rjson]; }; aliases2entrez = derive2 { name="aliases2entrez"; version="0.1.2"; sha256="11myzwvmagnj35qrrxr35hklzv76c0c4h2zl64y3lzzn5rfii0n6"; depends=[AnnotationDbi doParallel foreach limma org_Hs_eg_db RCurl readr]; }; @@ -6137,12 +6249,13 @@ in with self; { alleHap = derive2 { name="alleHap"; version="0.9.9"; sha256="1fqrw645s3f5363p7jl3dzy8xphxdr1v6wdsjmqcqwpgvjqfr2zz"; depends=[abind]; }; allelematch = derive2 { name="allelematch"; version="2.5.3"; sha256="1gr0s2zfc4i61bxz1prq9p2lyq17h10vzp0mkq2z6c2rfzqfhazc"; depends=[dynamicTreeCut]; }; allestimates = derive2 { name="allestimates"; version="0.2.3"; sha256="1gjkry5v1mrb11zd3r9z9cj6aasrhj29yihpizqphbb463qima3a"; depends=[broom dplyr ggplot2 stringr survival tidyr]; }; - allometric = derive2 { name="allometric"; version="1.4.1"; sha256="04d1k0vnkc13i0d4b3id15nnxflvmfp0fdmrf16lcf0przx4nwz7"; depends=[curl dplyr gh ISOcodes magrittr openssl progress purrr RefManageR rlang stringr tibble tidyr units vctrs]; }; - allomr = derive2 { name="allomr"; version="0.2.0"; sha256="1w0b32ks8mi2n1md91bikz1qca1cck5rjc5j2yf22s69dd9rnhqv"; depends=[]; }; + allofus = derive2 { name="allofus"; version="1.0.0"; sha256="03i9naibrcwyk7735q3khabbh7rrwm7gz0ffsmd9k50hfzkbs0a0"; depends=[bigrquery cli dbplyr dplyr glue magrittr purrr rlang sessioninfo tidyr]; }; + allometric = derive2 { name="allometric"; version="2.1.0"; sha256="15g9xyyiipg602s465kc082h7mlpwjfg6p9g2ba6n9ahhvcrhma7"; depends=[curl dplyr ISOcodes jsonlite magrittr openssl progress purrr RefManageR rlang stringr tibble tidyr units vctrs]; }; + allomr = derive2 { name="allomr"; version="0.3.0"; sha256="0bsvg4n8yql7241q6dfgki2lnd5kdivjg31lzllca8xfzrfxcvn1"; depends=[]; }; alluvial = derive2 { name="alluvial"; version="0.1-2"; sha256="039frwrsxq1lb97s7vf2vbyyadimkigs628ymym06fxka53drdkp"; depends=[]; }; almanac = derive2 { name="almanac"; version="1.0.0"; sha256="03954ylzqj34kkkz74ffa3i1kbby2vy0gxmbqd4gcw6qa646fq79"; depends=[cli glue lifecycle lubridate magrittr R6 rlang V8 vctrs]; }; alone = derive2 { name="alone"; version="0.3"; sha256="15ivqnnpn96x2pg83mswagqb0qaymafphc7awzik14vbg7k9pk9j"; depends=[]; }; - alookr = derive2 { name="alookr"; version="0.3.7"; sha256="0sdwphzxjh8y4gi3pnsdddra0x085h30m520j8im25z1bhxp0sq7"; depends=[caTools cli dlookr dplyr future ggmosaic ggplot2 glmnet MASS MLmetrics parallelly party purrr randomForest ranger rlang ROCR rpart tibble tidyr tidyselect xgboost]; }; + aloom = derive2 { name="aloom"; version="0.1.1"; sha256="0n5vqp9hhdhy092yg93ldm2ii1l5pz30r7m2iwpjck0s92jjrhda"; depends=[glmnet randomForest]; }; alpaca = derive2 { name="alpaca"; version="0.3.4"; sha256="1fqw8fcahpgdkj25pd6pq4isd0yrdpiypl3q9ir79a56pvjcn8a4"; depends=[data_table Formula MASS Rcpp RcppArmadillo]; }; alpha_correction_bh = derive2 { name="alpha.correction.bh"; version="0.0.1"; sha256="1rwz90hlbiday3s9c90v13s7mprxmmibgk08jkvxfc5axgy8qgqs"; depends=[knitr]; }; alphaN = derive2 { name="alphaN"; version="0.1.0"; sha256="0asm0r1cqbqan0d5dbb7jffqgrcai2kcpw1l2p9s4qxfff9vliva"; depends=[]; }; @@ -6158,7 +6271,7 @@ in with self; { altR2 = derive2 { name="altR2"; version="1.0.0"; sha256="15nvbq3n76p2857ipyf3q6rs2mwjqsp9gr3rmzbjfm8lrj0faxsv"; depends=[gsl purrr]; }; altadata = derive2 { name="altadata"; version="0.1.1"; sha256="0wv8a0423k0gw5i0qgz5d3wqw22a9pk7r80fp33pn0mxq9b54zdv"; depends=[httr jsonlite]; }; altair = derive2 { name="altair"; version="4.2.3"; sha256="1hbwhyplvqdc06va0lahpqzg89aihjhryic48422h8mks956y0ff"; depends=[assertthat htmlwidgets magrittr repr reticulate vegawidget]; }; - altdoc = derive2 { name="altdoc"; version="0.2.1"; sha256="0icvzxkmjnssiz4cpphm69drz3mla15i54j4gqfav4jxmz7166z0"; depends=[cli desc fs here htmltools rmarkdown rstudioapi servr tinkr usethis xml2 yaml]; }; + altdoc = derive2 { name="altdoc"; version="0.2.2"; sha256="0bxb08pmpgbbqchsdmvgcvcp93ln3mly14vhwqlqfnr318iv93k3"; depends=[cli desc fs here htmltools rmarkdown rstudioapi servr tinkr usethis xml2 yaml]; }; altfuelr = derive2 { name="altfuelr"; version="0.1.0"; sha256="0k3f4wr9gbn5aig40xg817hrnz2lx8g4adyy18s59fs8dw03v87h"; depends=[dplyr httr jsonlite lubridate magrittr purrr stringr]; }; altmeta = derive2 { name="altmeta"; version="4.1"; sha256="01v308389wqzp35icrp9ssb4y4gxwjzl600qw47c6rmm6s2mxzjh"; depends=[coda lme4 Matrix metafor rjags]; }; amanida = derive2 { name="amanida"; version="0.2.3"; sha256="0vi1x43s9xbr6ggx6km342qfqn2yppinsgn50gm73vckvb8672gs"; depends=[dplyr ggplot2 ggrepel kableExtra knitr magrittr readr readxl rmarkdown tibble tidyr tidyverse webchem]; }; @@ -6169,6 +6282,7 @@ in with self; { amazonadsR = derive2 { name="amazonadsR"; version="0.1.0"; sha256="1z4c58swpm6y5h4vlxil5ic9larhnn7xkzd9sgggni4878yk0rng"; depends=[jsonlite]; }; amazons3R = derive2 { name="amazons3R"; version="0.1.0"; sha256="1h39cm0vyrr299wfpq9p1dpbgrjhkr28wm2q23lq8627i4b8bn5m"; depends=[jsonlite]; }; amazonspR = derive2 { name="amazonspR"; version="0.1.0"; sha256="0il66gb43zm6shr870yqlfn6l1srl37pdxpq3pdkil8g20nf92rn"; depends=[jsonlite]; }; + amberr = derive2 { name="amberr"; version="1.0.0"; sha256="1m9mjxah9kk5d7rw7xanqwyjlwp924f6vw7glbj26n2f8k27ja7g"; depends=[dplyr httr jsonlite]; }; ambient = derive2 { name="ambient"; version="1.0.2"; sha256="18cmn075yhcbqlrf4gsgqflqzk2d0kc3ah23k9pn47q2dvr6fqn2"; depends=[cpp11 rlang]; }; ambit = derive2 { name="ambit"; version="0.1.2"; sha256="1zjsbza5gzr0sfprfxrxrxy3f75r64bi5szk519n2wf5vr4qr7si"; depends=[fBasics Rcpp]; }; amelie = derive2 { name="amelie"; version="0.2.1"; sha256="0f4rfijskrw9nmyzbrbz6yfa9d0a5cxjw8n9c36hc6jvh377i7k7"; depends=[]; }; @@ -6195,12 +6309,13 @@ in with self; { anesrake = derive2 { name="anesrake"; version="0.80"; sha256="1p2g51w80jiadlf4asbnsw46asarzlzr5c1yfhdb31ymqxd7p76q"; depends=[Hmisc weights]; }; angstroms = derive2 { name="angstroms"; version="0.0.1"; sha256="1k8q4pkb5vcjfp2n2dga3q2ydmdxv020k5qzrb6w01ixrgf15d8l"; depends=[nabor ncdf4 proj4 raster sp spbabel]; }; aniDom = derive2 { name="aniDom"; version="0.1.5"; sha256="04gqq6ibmr7zq8p9cbpxj98afq7yz82gp7prwbq2ymbxnkywwpgq"; depends=[rptR]; }; - aniSNA = derive2 { name="aniSNA"; version="1.0"; sha256="1i5my4afh407a990crin11m9nbwjpry0ldpcb0r2bpk8sr13gcnb"; depends=[dplyr ggplot2 igraph lubridate magrittr Rcpp reshape rlang stringr]; }; + aniSNA = derive2 { name="aniSNA"; version="1.1.0"; sha256="0vmpdmqr3cwpk588y116bv2nv1xcaya0mg53zcl3yc223df134zp"; depends=[dplyr ggplot2 igraph lubridate magrittr plotrix Rcpp reshape rlang stringr]; }; anim_plots = derive2 { name="anim.plots"; version="0.2.2"; sha256="0j786k5kkc1d33q52ki6fp3hnddjv7fv3ss6zjm9hqqgkq34vwqh"; depends=[animation]; }; animalEKF = derive2 { name="animalEKF"; version="1.2"; sha256="1qhmgwmg9nw8hcsd8gkvk0h8rmk82zkqjyd94a1d79cwmryxls9b"; depends=[bezier colorspace deldir ellipse ggplot2 HDInterval MASS Matrix MCMCpack mvtnorm plyr png rlang sf shiny sp]; }; animate = derive2 { name="animate"; version="0.3.9.4"; sha256="1pzgxz3xdp7c1swd5sxzlpyvvqv3shw8dxnbjwv1cr5g406p8970"; depends=[base64enc glue httpuv jsonlite R_utils R6]; }; animation = derive2 { name="animation"; version="2.7"; sha256="0sg4sz5lkn85yzpcg22xkr7921cbnh7g74nlp9imjy7c0hdqyhc8"; depends=[magick]; }; - animint2 = derive2 { name="animint2"; version="2023.6.11"; sha256="0kx0nycxzxgl0ybd5faw7ycdajj202ibpdlgxwnh4j3z1zklpynf"; depends=[data_table digest gtable knitr MASS plyr reshape2 RJSONIO scales]; }; + animbook = derive2 { name="animbook"; version="1.0.0"; sha256="0wbzpcqmr1ysk2xcwmjl1dldz7bpaqsdyq36512lipq60hzq1v81"; depends=[dplyr gganimate ggplot2 plotly purrr RColorBrewer rlang tibble tidyr tidyselect]; }; + animint2 = derive2 { name="animint2"; version="2023.11.21"; sha256="1y7wz6v3m4kbwfqb5zghp9jal591408an1w7gcanjzp7qrb0fpv3"; depends=[data_table digest gtable knitr MASS plyr reshape2 RJSONIO scales]; }; animl = derive2 { name="animl"; version="1.1.0"; sha256="1r6vy8kc98av2xwxas59gzqiynaxvddc5dxdkbvfd5v9zsglqr0y"; depends=[av dplyr exifr imager jpeg keras magrittr pbapply reticulate tensorflow tfdatasets]; }; anipaths = derive2 { name="anipaths"; version="0.10.2"; sha256="1fip68xj7zlznxsdjvwyh959nhryp0ikym3ng9ji8gz6d7yb0jyq"; depends=[animation crawl dplyr ellipse ggmap ggplot2 igraph lubridate magrittr mgcv mvtnorm raster RColorBrewer scales sf sp stringr tidyr tidyselect]; }; aniview = derive2 { name="aniview"; version="0.1.0"; sha256="1klakkmdk4xllaxd0pllvxi4396n6rz2idz55niy91mp0fhcjhwf"; depends=[htmltools jsonlite]; }; @@ -6209,30 +6324,30 @@ in with self; { annotater = derive2 { name="annotater"; version="0.2.2"; sha256="1yzsamy4zrr7v0kjnc3x034a7ffw1zj7cc5dx11pcwyhk88yba7z"; depends=[dplyr purrr readr rlang rstudioapi stringi stringr tibble tidyr]; }; annotator = derive2 { name="annotator"; version="0.0.3.1"; sha256="17jbr414wamxczsnxldz3la4n15d0b4lbhlhk8na9hniidin4f9b"; depends=[htmlwidgets shiny xfun]; }; anocva = derive2 { name="anocva"; version="0.1.1"; sha256="1byg40jla71k1901js5h9yq89j63d00vkm60id1fxlpv95c4wdrr"; depends=[cluster]; }; - anomalize = derive2 { name="anomalize"; version="0.2.4"; sha256="0i5vlhh9m00rqgk3wvy39fpzw9jxp38h3sxjqa74i54jy8maqdm6"; depends=[dplyr ggplot2 glue purrr rlang sweep tibble tibbletime tidyr timetk]; }; - anomaly = derive2 { name="anomaly"; version="4.3.0"; sha256="1dlq82nxrvg6ydcgk74axssg71zhfilb54h244abwrzj782286cf"; depends=[assertive BH dplyr ggplot2 Rcpp Rdpack tidyr xts zoo]; }; + anomalize = derive2 { name="anomalize"; version="0.3.0"; sha256="133gibw7wwvf4g6msgnw19pnnhlf02kp8c3jzgzdw5bbl6nb2225"; depends=[dplyr ggplot2 glue purrr rlang sweep tibble tibbletime tidyr timetk]; }; + anomaly = derive2 { name="anomaly"; version="4.3.2"; sha256="1w0bc5147rqsakiz3cs37xcd27i2b5ni1dva2kxv8l17ma0519v3"; depends=[BH cowplot dplyr ggplot2 Rcpp Rdpack tidyr xts zoo]; }; anovir = derive2 { name="anovir"; version="0.1.0"; sha256="1x7lvj7xchbv6siyc9miivmf0rlxrjflal4icyvbxgdr285s2s9w"; depends=[bbmle]; }; anscombiser = derive2 { name="anscombiser"; version="1.1.0"; sha256="1hakvxgc50zshi5kplg90r0499mihhwvhhz7bshndjxxci1ashkl"; depends=[]; }; - antaresEditObject = derive2 { name="antaresEditObject"; version="0.6.0"; sha256="1bj49sgnygkriqw7i6fqkf6d3piplxa58bgllrbzk29ngp2z1zdz"; depends=[antaresRead assertthat cli data_table doFuture doParallel future httr jsonlite memuse pbapply plyr progressr whisker yaml]; }; + antaresEditObject = derive2 { name="antaresEditObject"; version="0.6.1"; sha256="0ll4vql2lnhp3dlhq1i91yzr24cpkzbnlnarqri931h53pb3sa5d"; depends=[antaresRead assertthat cli data_table doFuture doParallel future httr jsonlite memuse pbapply plyr progressr whisker yaml]; }; antaresProcessing = derive2 { name="antaresProcessing"; version="0.18.1"; sha256="1dlq850xqh9534ws88ma3vv5r79cbabn6r6a2jmicxx116s7wjrz"; depends=[antaresRead data_table]; }; antaresRead = derive2 { name="antaresRead"; version="2.6.0"; sha256="1rlgkq8nna6zs7i5czj1wbcyzng5bj9w7mijz5yy80mf5qd6x2v3"; depends=[bit64 data_table doParallel httr jsonlite lubridate memuse pbapply plyr purrr shiny stringi stringr]; }; antaresViz = derive2 { name="antaresViz"; version="0.18.0"; sha256="1lffsxv8fy3yq6rx6520rizp9f74d8bd78by5n209yr9yhw1629r"; depends=[antaresProcessing antaresRead assertthat data_table dygraphs geojsonio htmltools htmlwidgets leaflet leaflet_minicharts lubridate manipulateWidget plotly rAmCharts sf shiny sp spMaps webshot]; }; anthro = derive2 { name="anthro"; version="1.0.1"; sha256="0vp55q0f9d4gljwzfzr07f80q5ip59imvklfw8gg1rjw83yaqpxr"; depends=[survey]; }; anthroplus = derive2 { name="anthroplus"; version="0.9.0"; sha256="1wnj2idgdnh2gdw34x40adijf2sxp3k72j45pqqxg4aqc1wrvvv1"; depends=[anthro]; }; - anticlust = derive2 { name="anticlust"; version="0.8.0"; sha256="0mns6d11i3p8vbm7cfxgqvln043ii5h1lxzwvdnpz9rqy90dj85r"; depends=[Matrix RANN]; }; + anticlust = derive2 { name="anticlust"; version="0.8.1"; sha256="1dsb9bvbg78gxrpxiddnm8diym8k0fsdgykk35icf6ww6krzzymx"; depends=[Matrix RANN]; }; antitrust = derive2 { name="antitrust"; version="0.99.26"; sha256="172y87vnifxbs4n06v3qvwlxnl3fxhfp9cp1qzm4agcvqh1j7rxz"; depends=[BB numDeriv]; }; antiword = derive2 { name="antiword"; version="1.3.1"; sha256="123v8zlczwh6fr1v3x7dl3885xlmddq1bqlcxih8zh07w0hlk1k2"; depends=[sys]; }; anyLib = derive2 { name="anyLib"; version="1.0.5"; sha256="1x9x58hhkkwdskmgdjv94ynh811n9w0752hh4214adl1qpn576vm"; depends=[BiocManager curl devtools httr withr]; }; anybadger = derive2 { name="anybadger"; version="0.1.0"; sha256="1aa09v5k5nlvhlir8saa5gnrq7cb1djbdc8y85cjgb3skay94hzv"; depends=[config glue magrittr purrr R6]; }; anyflights = derive2 { name="anyflights"; version="0.3.4"; sha256="1dycpzc36n31zd21f7iniij6l70cdmgcc3sgar7m8msvhimkafkj"; depends=[curl dplyr glue httr lubridate progress purrr readr roxygen2 stringr usethis vroom]; }; anytime = derive2 { name="anytime"; version="0.3.9"; sha256="0jjpqynai5nd7mfy1smb44356f3d5bmpxhs1i9x9jw5c959c35hh"; depends=[BH Rcpp]; }; - ao = derive2 { name="ao"; version="0.2.7"; sha256="1lmvq1np3b9pg3n2xnlscrnnjnqj4aada2mkgmv3z32sbfak77lk"; depends=[checkmate optimizeR]; }; - aod = derive2 { name="aod"; version="1.3.2"; sha256="0p2i536s0aa54rah1l465g77k2ldn6jm6s25y9vc06mk29xvx1cv"; depends=[]; }; + ao = derive2 { name="ao"; version="0.3.0"; sha256="0707j2lwaiy60s5zc35irmf4dnxv7wcfvngacpri7fazd6b6sd97"; depends=[checkmate optimizeR]; }; + aod = derive2 { name="aod"; version="1.3.3"; sha256="0zh8sjzbsq3sjzayv8wa0n1vh654g47xkxklgzxcsy3xpy55w95p"; depends=[]; }; aods3 = derive2 { name="aods3"; version="0.4-1.2"; sha256="0rd4xr7nwac49m8h4pr8hv79giyv2rrlnz78r7mxa6lpgkmgqp4d"; depends=[]; }; aoos = derive2 { name="aoos"; version="0.5.0"; sha256="0y92vs27i0mkpjdclqzq4j9g1axkymhi3v8xp1v6hazh35yzjkfj"; depends=[magrittr roxygen2]; }; aopdata = derive2 { name="aopdata"; version="1.0.3"; sha256="13i8fjvqx42jslgyl271cbnpmsxqxmkrs5hiaxr5i8srrq55d60m"; depends=[checkmate curl data_table httr sf]; }; aoristic = derive2 { name="aoristic"; version="1.1.1"; sha256="1zanf21qmnjmwzzccpdm1bwnyhv9zqjirrylfwmbpkzlmvp0a4pb"; depends=[dplyr ggplot2 lubridate openxlsx plyr scales tidyr]; }; - aorsf = derive2 { name="aorsf"; version="0.1.0"; sha256="0rwxqxs2jhi8a6przsxnrx1a6zax7i25qli8a83jxxibswhx0j05"; depends=[collapse data_table Rcpp RcppArmadillo]; }; + aorsf = derive2 { name="aorsf"; version="0.1.1"; sha256="1xrhd0p2m5bhm34kkm5v5j5fxflh7rdl2brap7j6qcg67s9fibls"; depends=[collapse data_table Rcpp RcppArmadillo]; }; aos = derive2 { name="aos"; version="0.1.0"; sha256="0nkl7dkqjfp4ahwmn3vs0akx6x2brf0m5gzzzx6pf54j1qwypbhf"; depends=[htmltools jsonlite]; }; apa = derive2 { name="apa"; version="0.3.4"; sha256="0w4cqb9fviz6k4b9cj31sgizqmrkxjr9hjdb8ap32ylzr9dw6gy0"; depends=[dplyr magrittr MBESS purrr rmarkdown stringr tibble]; }; apaTables = derive2 { name="apaTables"; version="2.0.8"; sha256="0jy6x0z9ivqqkjihqhyg3fxyghqa9gs6q2bpxzjdnbcb3kq151vd"; depends=[boot broom car dplyr MBESS tibble]; }; @@ -6253,6 +6368,7 @@ in with self; { aplot = derive2 { name="aplot"; version="0.2.2"; sha256="094bzrcjybs2dk2plmxf80mbx9dz1hi5m7gp8bbs5qqh03xn7wf7"; depends=[ggfun ggplot2 ggplotify magrittr patchwork]; }; aplotExtra = derive2 { name="aplotExtra"; version="0.0.2"; sha256="0sh3c78p37kn00hkps5ai3aqz391wwpbck2rar4rdvwclg4818my"; depends=[aplot dplyr forcats ggfun ggplot2 ggstar maftools purrr rlang tibble tidyr yulab_utils]; }; aplpack = derive2 { name="aplpack"; version="1.3.5"; sha256="0kv6sbw8832hlfc6164bfvg1ga4hkfw4c7i11dlz7mbhrw2vqm24"; depends=[]; }; + apmx = derive2 { name="apmx"; version="1.1.1"; sha256="0i9296dvlzmaxhkp3rj2irxyjmlaazl6abcbgkc2izfn29l2d8nm"; depends=[arsenal dplyr flextable officer purrr this_path tidyr tidyselect]; }; apng = derive2 { name="apng"; version="1.1"; sha256="0g1rs8wdcbqhyjis2r1a4d96jf0486ncnap97yjv08nk574d42wp"; depends=[bitops]; }; apollo = derive2 { name="apollo"; version="0.3.1"; sha256="0in0d0af3pr61zfd9fvych4vakmsz66clw4zywvy4pqj8v8q3axa"; depends=[bgw cli coda Deriv matrixStats maxLik mnormt mvtnorm numDeriv randtoolbox Rcpp RcppArmadillo RcppEigen RSGHB Rsolnp stringr tibble]; }; appRiori = derive2 { name="appRiori"; version="0.0.3"; sha256="18hvrn5zdcp7q64pcbg3jgssiyi4m4cy7bkm4al1f8m4p46j7qbq"; depends=[dplyr DT hypr markdown MASS pracma rhandsontable shiny shinythemes sortable stringr]; }; @@ -6271,7 +6387,7 @@ in with self; { apsimx = derive2 { name="apsimx"; version="2.3.1"; sha256="1d1ipzf9ahdb3540zjcyzj4dwx5v8b73av790ahhbmc128vdmspj"; depends=[DBI jsonlite knitr RSQLite xml2]; }; apt = derive2 { name="apt"; version="3.0"; sha256="14njvpf6q34nffm3r9gqcszlabzbydsxqj0ln9nk4mv59izp8sqm"; depends=[car erer urca]; }; apyramid = derive2 { name="apyramid"; version="0.1.3"; sha256="0i1wkqnf1n5x7y7i116gr7y215aibklcnhb7rm76g8wm7241y3vk"; depends=[dplyr forcats ggplot2 glue rlang scales tidyselect]; }; - aqp = derive2 { name="aqp"; version="2.0.1"; sha256="1dmwrml1qsaj9x0h8a9d2znpw4rscvlcapbj19chrxszncsr2lwi"; depends=[cluster data_table farver lattice sp stringr]; }; + aqp = derive2 { name="aqp"; version="2.0.2"; sha256="103fbjb60ny5sarp9ixd2d40kp6j57hhn8f7s83jm3frl5vpb64g"; depends=[cluster data_table farver lattice sp stringr]; }; aquodom = derive2 { name="aquodom"; version="0.1.1"; sha256="11w3qf1fwa5gqbiwfq23hrw8k009xbn8rwdb5fgckykyc49lhqbk"; depends=[cachem dplyr glue httr lubridate magrittr memoise openxlsx readr rlang stringr tibble]; }; ar_matrix = derive2 { name="ar.matrix"; version="0.1.0"; sha256="1d531hkl50szfa1q0zbp8dp1a9jli63kwvxjgc9n0ar279y47qdz"; depends=[MASS Matrix sp sparseMVN]; }; arabic2kansuji = derive2 { name="arabic2kansuji"; version="0.1.3"; sha256="1f8ca7hwbn3vl44xrvpfb5n11rv4sbhv2ksg88kx7rk7hik5rbdi"; depends=[purrr stringr]; }; @@ -6285,19 +6401,20 @@ in with self; { archetyper = derive2 { name="archetyper"; version="0.1.0"; sha256="1d4vz7kj7n5j81fwfxvr47if8c7fdycci6n33wf8paac0v2paqli"; depends=[bannerCommenter config feather here knitr log4r ps readr rmarkdown skimr snakecase stringr testthat tidyverse]; }; archetypes = derive2 { name="archetypes"; version="2.2-0.1"; sha256="0ibxsr173ib77gjhid91m85s8gjii4mi2w3d52q5301igv20p7r0"; depends=[modeltools nnls]; }; archiDART = derive2 { name="archiDART"; version="3.4"; sha256="1wvjlg2rwy39czf3qqh9igk9rmk9i7pxa9yl5x9yqmsagwd1av3n"; depends=[geometry gtools sp XML]; }; - archive = derive2 { name="archive"; version="1.1.6"; sha256="0jshrkz2bvz9sq8iyij39ih6h3js3sqajzsa9ly5pqqhmmkk7q7c"; depends=[cli cpp11 glue rlang tibble]; }; + archive = derive2 { name="archive"; version="1.1.7"; sha256="0z3xw07164knwcnhvrqs83ilihydhi11lia0nx0ckyyl0a9xdvqi"; depends=[cli cpp11 glue rlang tibble]; }; archiveRetriever = derive2 { name="archiveRetriever"; version="0.3.1"; sha256="0y01am255i682iaj55aiza6arlb0whqhamd09nqjrnwy4hmkbidq"; depends=[anytime dplyr ggplot2 gridExtra httr jsonlite lubridate rvest stringr tibble tidyr xml2]; }; archivist = derive2 { name="archivist"; version="2.3.6"; sha256="0q1qysack30xzxdbvvi56rk7r85hsj4ghls9r70ki7bl3rqwr4c9"; depends=[DBI digest flock httr lubridate magrittr RCurl RSQLite]; }; archivist_github = derive2 { name="archivist.github"; version="0.2.6"; sha256="092fzi505vx9xbk41m86d0isxna42iflp7q2kjiqa6z1ccvim2yx"; depends=[archivist digest git2r httr jsonlite]; }; + arcpbf = derive2 { name="arcpbf"; version="0.1.0"; sha256="0mmr5q5j4i9qq8m7ybgjz6m40g0qq0z24cznygrsi01kas11s8qd"; depends=[rlang]; }; arcpullr = derive2 { name="arcpullr"; version="0.2.8"; sha256="1wdr18y2fld69f9rjb3jhd0dsq2q386djncpwcwypysb60rs7lpa"; depends=[dplyr DT ggplot2 httr jsonlite raster rlang sf tidyr]; }; arctools = derive2 { name="arctools"; version="1.1.6"; sha256="01a1kmkmnwm8ryv1hr0w79ghbk844w7fnv1yiq9mmwrs4jbgfrcf"; depends=[lubridate runstats]; }; ardl_nardl = derive2 { name="ardl.nardl"; version="1.2.3"; sha256="0havazgn9vblnp0sy8hc9r42sngj7lbm0ni13h148a9pcnpc8ax3"; depends=[car dplyr gets lmtest nardl rlist sandwich stringr texreg tseries]; }; ards = derive2 { name="ards"; version="0.1.1"; sha256="1dnq63klzbwvkcaxn9bng4wvh8mhggkwa69ypwf5kdn1rjways88"; depends=[]; }; - area = derive2 { name="area"; version="0.1.0"; sha256="1dyxrfs69x3dssb7ifs024m4l3b1fdap1x5lkbkpas5ngyg7ivcz"; depends=[cpp11]; }; + area = derive2 { name="area"; version="0.2.0"; sha256="0bzl5jagnpd7s8n6dp8v83z282qgfqg3fz52d909dg0fxxrpq30y"; depends=[cpp11]; }; areabiplot = derive2 { name="areabiplot"; version="1.0.0"; sha256="0izgvlg174jbr3fm3qc8zh23kfs7hn9bwd40x6vm90iivrrgdcp7"; depends=[nipals]; }; areal = derive2 { name="areal"; version="0.1.8"; sha256="14hwif59lxjdf0crq5mp2w2rhz9b7l1b33r0ssd1j60ml2fv6488"; depends=[dplyr glue purrr rlang sf]; }; arealDB = derive2 { name="arealDB"; version="0.6.3"; sha256="08mmalw9ii4i6ills6i77bfgy3ybzd4161wmag36b0q9fvkkcyhr"; depends=[checkmate dplyr magrittr ontologics progress purrr readr rlang rmapshaper sf stringr tabshiftr tibble tidyr tidyselect]; }; - areaplot = derive2 { name="areaplot"; version="2.0.0"; sha256="15lkdrk9xyhpskvr884a4c8ap6hh3n0c0wmi10vxyafi6p2pdsl0"; depends=[]; }; + areaplot = derive2 { name="areaplot"; version="2.1.1"; sha256="11g8r5qccaynbism0imybkcyxs28sz6zm59d7xlkf7y3vppj2pcn"; depends=[]; }; arena2r = derive2 { name="arena2r"; version="1.0.0"; sha256="14zjpglp389pldi436935fz6mgi4jdgfii1m035nsvihrms9gqkh"; depends=[dplyr ggplot2 magrittr purrr rlang shiny shinyBS shinydashboard shinyjs tidyr]; }; arenar = derive2 { name="arenar"; version="0.2.0"; sha256="08b865v7ringqzm5m4ib4nrmlyqywir6bjj7alzmg06dy7mrl9s7"; depends=[auditor DALEX fairmodels gistr iBreakDown ingredients jsonlite plumber]; }; arf = derive2 { name="arf"; version="0.1.3"; sha256="0x5r8b76lzd6a7dzrnr63z7zjfhg75vwjzlzafw652wh2pc37fqk"; depends=[data_table foreach matrixStats ranger truncnorm]; }; @@ -6312,9 +6429,9 @@ in with self; { argus = derive2 { name="argus"; version="0.1.1"; sha256="1qg1nphy7jn92zqx1lqg68l5dhpwa4b5407mkwwrsdy5x2r0x7s2"; depends=[Runuran]; }; ari = derive2 { name="ari"; version="0.3.5"; sha256="03w99c918jp23d0kl26vx4m7xjicpgwl5rhn9d0fsm4kvv7j87li"; depends=[hms progress purrr rmarkdown rvest text2speech tuneR webshot xml2]; }; aricode = derive2 { name="aricode"; version="1.0.3"; sha256="02nrw66jfpzf6dy0zy21sbdjxjc8c11iv9fkjqj5akzb7wskk9qh"; depends=[Matrix Rcpp]; }; - arima2 = derive2 { name="arima2"; version="3.0.1"; sha256="1q3b11dgky67c4la19hcd07w05dswz67yydgfdm09lgs54f52iwy"; depends=[ggplot2]; }; - arkdb = derive2 { name="arkdb"; version="0.0.16"; sha256="1xzp0j20z8vbzaalmxxqdcipd5fr6syw2k96fv2i6cf54xdaa1p3"; depends=[DBI]; }; - arkhe = derive2 { name="arkhe"; version="1.3.0"; sha256="1mya1c8dzpwkag0r0wrj45x0wwi296m4mmhgbhyk7cyaqyl7wka8"; depends=[]; }; + arima2 = derive2 { name="arima2"; version="3.1.0"; sha256="0sfg7h7rvvrsa2bjmipvm49cr26imnaf3h53czgkprw4knarx8z3"; depends=[ggplot2]; }; + arkdb = derive2 { name="arkdb"; version="0.0.17"; sha256="1kmbl12rz8zwbn0cxqfnzil9pnkni3z5jsyw0k3q00hhc54n0h59"; depends=[DBI]; }; + arkhe = derive2 { name="arkhe"; version="1.4.0"; sha256="05ghvcqyb5l1x718hnza60ybi3pc4jvpxf5z1hk8062vpb6cgn8x"; depends=[]; }; arm = derive2 { name="arm"; version="1.13-1"; sha256="0dz9dnsky77da2mc198dr3600kz9vk75z1iihjarnsdrq68a4bf0"; depends=[abind coda lme4 MASS Matrix nlme]; }; armada = derive2 { name="armada"; version="0.1.0"; sha256="191iwf5y1za3wssawkyi9jcingfqqxcvv88hglpw6j7y3x5f47hf"; depends=[anapuce circlize ClustOfVar ComplexHeatmap doParallel FAMT glmnet impute mvtnorm qvalue VSURF]; }; armspp = derive2 { name="armspp"; version="0.0.2"; sha256="098c59hdzr4ly8sx72xkcbjmiz5y65id1slsscwjji1yssb23lqq"; depends=[Rcpp]; }; @@ -6327,14 +6444,14 @@ in with self; { arrApply = derive2 { name="arrApply"; version="2.2"; sha256="0bp30622md9zzdgv9g1kqp5k450cd5yzpqji51wwcjp8l347fb6y"; depends=[Rcpp RcppArmadillo]; }; arrangements = derive2 { name="arrangements"; version="1.1.9"; sha256="0nrlyxgn6667l2rb1q5rvps1anld9aq88qqr3ch2i6zchnqxrdg9"; depends=[gmp R6]; }; arrayhelpers = derive2 { name="arrayhelpers"; version="1.1-0"; sha256="02rl530qxi1idiqpmzg5wr9vl5c7phizhpj64k5pn8xq9zfxbpaz"; depends=[svUnit]; }; - arrow = derive2 { name="arrow"; version="13.0.0.1"; sha256="1h08zx7hvmsib7mi8yn0pk0y2bqqn5scr804ln0g30jwvcjx7w56"; depends=[assertthat bit64 cpp11 glue purrr R6 rlang tidyselect vctrs]; }; + arrow = derive2 { name="arrow"; version="14.0.0.2"; sha256="1dwap9lap0hac0bhi8ajz06n9ccjdyfr5s153k1lxfgicqnsaf3i"; depends=[assertthat bit64 cpp11 glue purrr R6 rlang tidyselect vctrs]; }; ars = derive2 { name="ars"; version="0.6"; sha256="0zs1rk3i7pc9wcvxrvjcls194mfbvmkz7cb6pwd1cm3fzjwsyxsp"; depends=[]; }; arse = derive2 { name="arse"; version="1.0.0"; sha256="0ssaalc058m09gfcr1n0s729rx2plia3zkhlynj67drclyvhyb0i"; depends=[dplyr pracma]; }; arsenal = derive2 { name="arsenal"; version="3.6.3"; sha256="0qvs3ld28djnjnggdhqjwq8sbv8zz322qahlvf7dnx35yqf6xkms"; depends=[knitr]; }; artfima = derive2 { name="artfima"; version="1.5"; sha256="1nqsq9fsqk9kag9n7i2r9yvf578nkdfrkkv7qy8650prka0jca2p"; depends=[gsl ltsa]; }; arthistory = derive2 { name="arthistory"; version="0.1.0"; sha256="01jw0r3pmwwrs5cb31pjyf5cygnfqzyim2dw45lqd0yywkmc5y3h"; depends=[]; }; artpack = derive2 { name="artpack"; version="0.1.0"; sha256="124lybfsxy62qdwr14w8w88kn4fylfff6qd2xy07x2g3lncf6497"; depends=[cli dplyr knitr purrr rlang stringr tibble]; }; - arules = derive2 { name="arules"; version="1.7-6"; sha256="0syrbh85vzhp9plm95dhq6pfanzbxqm4wcahw3y2d26gvi2nmzwm"; depends=[generics Matrix]; }; + arules = derive2 { name="arules"; version="1.7-7"; sha256="183isw4sy5gv5fxajiy4pm5p3nfd1pffa4h8sisl2nrw2rig9na2"; depends=[generics Matrix]; }; arulesCBA = derive2 { name="arulesCBA"; version="1.2.5"; sha256="13p876k3wg84khvzf6kkjpna0l9yjxyq43nh9dnpma7sidq5ldi0"; depends=[arules discretization glmnet Matrix]; }; arulesNBMiner = derive2 { name="arulesNBMiner"; version="0.1-8"; sha256="0kqvi7dzq3mrn6cq22gwxh4p54mgfn9s1sd2cfnbw1f9zp078lsn"; depends=[arules rJava]; }; arulesSequences = derive2 { name="arulesSequences"; version="0.2-30"; sha256="1bnsgjjwrp1n5szhlyg3lhrhcz0sgdxsfdilbi5id9jbdkq9632a"; depends=[arules]; }; @@ -6362,43 +6479,34 @@ in with self; { aspect = derive2 { name="aspect"; version="1.0-6"; sha256="13pb1pslyka706v13b7hdrzzn5bxmj2l5irpd9f1pm1n8a1ivrrl"; depends=[]; }; aspi = derive2 { name="aspi"; version="0.2.0"; sha256="0rhvxw243vvdv3hxa6pi343gcjc2cbxq1jzqirl9k1l4i3897l87"; depends=[]; }; aspline = derive2 { name="aspline"; version="0.2.0"; sha256="1a68x6jvsaxviy2w361f19iqzsdsaf9kcqw5cknf4yz9fvkqhjny"; depends=[dplyr ggplot2 magrittr mgcv Rcpp rlang splines2 tidyr]; }; - asremlPlus = derive2 { name="asremlPlus"; version="4.4.15"; sha256="0yvfazsf5jh21kiippsbxfq3wv9j84wnq2659y6zhsn1svn0bs6i"; depends=[dae devtools doParallel dplyr foreach ggplot2 qqplotr RColorBrewer reshape2 rlang sticky stringr]; }; + asremlPlus = derive2 { name="asremlPlus"; version="4.4.24"; sha256="1yvy94g4pmzr9y2wq16zlw9bcyc0siz81qjgxy2yi5vcyr2li5bl"; depends=[dae devtools doParallel dplyr foreach ggplot2 nloptr qqplotr RColorBrewer reshape2 rlang sticky stringr]; }; r_assert = derive2 { name="assert"; version="1.0.1"; sha256="0n5l48yb0djl6rdj50p1dslpw3c5kbi15yz6z6rdgic575gjwzdc"; depends=[]; }; assertable = derive2 { name="assertable"; version="0.2.8"; sha256="1cciil1nzxd8gbj49w99jiv077lbpb59vx7bmb4p218aj2h5hqq4"; depends=[data_table]; }; assertions = derive2 { name="assertions"; version="0.1.0"; sha256="18926pk2g0hc4dyzm1ghp69sgj7mdx8vzi1vykyxbk0046sg53wp"; depends=[cli glue rlang]; }; - assertive = derive2 { name="assertive"; version="0.3-6"; sha256="02palil82idqhhshcdjsfsja9qkqnd0dczqzj5gbccy4hfg1c0y4"; depends=[assertive_base assertive_code assertive_data assertive_data_uk assertive_data_us assertive_datetimes assertive_files assertive_matrices assertive_models assertive_numbers assertive_properties assertive_reflection assertive_sets assertive_strings assertive_types knitr]; }; assertive_base = derive2 { name="assertive.base"; version="0.0-9"; sha256="07m0ddz092bgbl2fn1yk932h0iajdcqkri632477wl5a1q5r3w2b"; depends=[]; }; - assertive_code = derive2 { name="assertive.code"; version="0.0-4"; sha256="11qkhbjyxw0njzhcszyc2452518yrn3jr5l4n9jnzq10xms090ig"; depends=[assertive_base assertive_properties assertive_types]; }; - assertive_data = derive2 { name="assertive.data"; version="0.0-3"; sha256="00cvg2g36mdl8plrzx40m63qd55742mddqrchwy9n3c7mm4gn02s"; depends=[assertive_base assertive_strings]; }; - assertive_data_uk = derive2 { name="assertive.data.uk"; version="0.0-2"; sha256="1fzjvhwp7mwkqqix29khvs6zcrc82n6j4czvzzb473vyjyvdlj5b"; depends=[assertive_base assertive_strings]; }; - assertive_data_us = derive2 { name="assertive.data.us"; version="0.0-2"; sha256="1bgspn0sccmp9z7s7djvdvprgxlyc5vrxznp4zfjb79kwvgn83hq"; depends=[assertive_base assertive_strings]; }; - assertive_datetimes = derive2 { name="assertive.datetimes"; version="0.0-3"; sha256="151d05z8n6dpl44pqsa1jfi0ijbigr3zfc43xlw53nd8ymi22kh1"; depends=[assertive_base assertive_types]; }; assertive_files = derive2 { name="assertive.files"; version="0.0-2"; sha256="02pfz8j5vwcj5kl6zca46894li7lxwnlrr29j922f14ay6kdssmy"; depends=[assertive_base assertive_numbers]; }; assertive_matrices = derive2 { name="assertive.matrices"; version="0.0-2"; sha256="16sykzcndv6y2d43x6v9n7m95kv76364h39kh10w4z0xw6ksfqil"; depends=[assertive_base]; }; assertive_models = derive2 { name="assertive.models"; version="0.0-2"; sha256="0bn4j4v5qvb2d672cgri61p8d9v258pmz35y3lvm6b9mdxwdi9mr"; depends=[assertive_base]; }; assertive_numbers = derive2 { name="assertive.numbers"; version="0.0-2"; sha256="0jc3ss64j4m7bjydhagwwmka5n7c72vpw4kfcch0m5jvkq5qrqds"; depends=[assertive_base]; }; - assertive_properties = derive2 { name="assertive.properties"; version="0.0-5"; sha256="1pgljbwwbvbl4kc5c8mcv0qbzq3k6fzi29k88811yml263sm92dn"; depends=[assertive_base]; }; assertive_reflection = derive2 { name="assertive.reflection"; version="0.0-5"; sha256="1g9lpwzy6r2xmyi2mlbcccnfgyzhzbmx5bsicf3vkffxrlkrpjn2"; depends=[assertive_base]; }; assertive_sets = derive2 { name="assertive.sets"; version="0.0-3"; sha256="1cqvh2syvh5b6d85h601zjmsdbbf3h8q98ids4dfl4frdshpasc7"; depends=[assertive_base]; }; - assertive_strings = derive2 { name="assertive.strings"; version="0.0-3"; sha256="0n6jrk88670g4ym0r8ii40a08a90z1xadj8wcryk8h0nl04dchfm"; depends=[assertive_base assertive_types stringi]; }; - assertive_types = derive2 { name="assertive.types"; version="0.0-3"; sha256="0zxq1jfrzgw95ll7alvm0xnk7aihjdksngq4ya2whyvfjbmv4vdb"; depends=[assertive_base assertive_properties codetools]; }; - assertr = derive2 { name="assertr"; version="3.0.0"; sha256="1wi3mz968clvwqg6mbm32zhj4vyfskklk72b4028cjsfdry6bpfp"; depends=[dplyr MASS rlang]; }; + assertr = derive2 { name="assertr"; version="3.0.1"; sha256="0g7h88kkls6v1nfzbar40y56yv3lkqb7vrcy63xqgc99zcf8k4bc"; depends=[dplyr MASS rlang]; }; assertthat = derive2 { name="assertthat"; version="0.2.1"; sha256="17wy5bdfzg73sg2clisg1k3zyn1adkj59x56m5nwia2k8z67zkw5"; depends=[]; }; assignPOP = derive2 { name="assignPOP"; version="1.2.4"; sha256="1zzapgzf09l39bckwykzr8im2wxmndpmzykll2wi7njwlklpjry3"; depends=[caret doParallel e1071 foreach ggplot2 MASS randomForest reshape2 stringr tree]; }; assignR = derive2 { name="assignR"; version="2.4.0"; sha256="01lsmzqqy56i9b5yyiyd8njs8nl4qznn6h4rkyizcjalch6sy4rl"; depends=[geosphere mvnfast rlang terra]; }; assist = derive2 { name="assist"; version="3.1.9"; sha256="0n2348hld38jg1z8axaqs000qczbwbpq5yq5sshfn9k08p5b1szk"; depends=[lattice nlme]; }; assocInd = derive2 { name="assocInd"; version="1.0.1"; sha256="16yzgvlqbapjhvzm5nw8vfrhh8mp9llnhck4bpgmszyrh93z1ha5"; depends=[]; }; assortnet = derive2 { name="assortnet"; version="0.20"; sha256="15qah885jjiwxrf1bhmbjpsamgylmy8cwjbd3w0di7n8j4zv6gwr"; depends=[]; }; - ast2ast = derive2 { name="ast2ast"; version="0.3.1"; sha256="1418kvg4jvfn7c4vny87431a8lqkky9a51grkw8qc8sszcp7mlyf"; depends=[dfdr purrr R6 Rcpp RcppArmadillo rlang]; }; + ast2ast = derive2 { name="ast2ast"; version="0.3.2"; sha256="1vsnd7w0z0wr4185wg6k7xjd4xc8qsm08f4wfgcnyd79x56wczky"; depends=[dfdr purrr R6 Rcpp RcppArmadillo rlang]; }; asteRisk = derive2 { name="asteRisk"; version="1.4.3"; sha256="0rfbm5c2lgs921ncajsjyyxzfiqls40xlxqp2pwp7c0rxhiz2rd6"; depends=[deSolve nanotime onion Rcpp RcppParallel]; }; - aster = derive2 { name="aster"; version="1.1-2"; sha256="0vf1ffkn4a3bz2lgz1gn2hjgp8c2v9ch05d5r1gh2q77zijvry1m"; depends=[trust]; }; + aster = derive2 { name="aster"; version="1.1-3"; sha256="1piimmrsvhbps8ld6vjjg82kf8pm5nwl91437dglid802p51pwlm"; depends=[trust]; }; aster2 = derive2 { name="aster2"; version="0.3"; sha256="17d200sg0vn1fj6lb480dhszm70q6ipjldilb3x0jp72hiczakk9"; depends=[Matrix]; }; astroFns = derive2 { name="astroFns"; version="4.2-1"; sha256="0c81q9xddd9m2lhbv7r2aq1w262vjamcv8qg4mgrndww8n6vf8zn"; depends=[]; }; astrochron = derive2 { name="astrochron"; version="1.2"; sha256="1wkc8314iyhkdg1y9gr1wzqj9h67n3kqq8wiiq9n2xmgly9b40sz"; depends=[doParallel fields foreach IDPmisc iterators multitaper palinsol viridisLite]; }; astrodatR = derive2 { name="astrodatR"; version="0.1"; sha256="00689px4znwmlp6qbj6z2a51b7ylx1yrrjpv6zjkvrwpv6lyj9fw"; depends=[]; }; astsa = derive2 { name="astsa"; version="2.0"; sha256="0rv4fnz5bbd6f8b6fwa2ljdjq5yx0qi7hcbhrgvrbibl2pzfm7w7"; depends=[]; }; asus = derive2 { name="asus"; version="1.5.0"; sha256="05rsbakby0w3xf5zaq5flp4if31x8fnm1l0n1r51ympw4wzzqjh5"; depends=[wavethresh]; }; - asylum = derive2 { name="asylum"; version="1.1.1"; sha256="1cjmrvlhk34swrl44xxjqnka1xi2sf0ciszx1szrg7wz4c9kb6mp"; depends=[]; }; + asylum = derive2 { name="asylum"; version="1.1.2"; sha256="1gvwnlq5xxy4iiba87wm6f5j7b1gzjz1fzfwj8s6m4z3764j8inb"; depends=[]; }; asymLD = derive2 { name="asymLD"; version="0.1"; sha256="1q05pxwn6arpalspgf2m0cym4ivnwyv94i58k9kaihd37kvm5lgc"; depends=[]; }; asymmetry = derive2 { name="asymmetry"; version="2.0.4"; sha256="1zppf4gb0rz9c4ixd6fym2qyjs8ddzq09is1rlf000mcnarfl22b"; depends=[gplots smacof]; }; asymmetry_measures = derive2 { name="asymmetry.measures"; version="0.2"; sha256="039afqmdir200aijln9q0g3rkahkxqahw6yz5mnw62jsslr9xskb"; depends=[gamlss_dist skewt sn]; }; @@ -6416,7 +6524,7 @@ in with self; { atpolR = derive2 { name="atpolR"; version="0.1.1"; sha256="1mi2xghd5vxy6qx621dihx70wk3w1nqvm2h3j2drrb84b8zbvcvh"; depends=[Rdpack sf stringr terra]; }; attachment = derive2 { name="attachment"; version="0.4.0"; sha256="10icxxxg3xrq6gcb6mhd0krg2f9m4zi4smin5icgbqqf5023lyjv"; depends=[cli desc glue knitr magrittr rmarkdown roxygen2 stringr withr yaml]; }; attempt = derive2 { name="attempt"; version="0.3.1"; sha256="1ylgg7jcp8wqmxgf1mydnvh26k0mr8jyjla4hw06730r40yrs58m"; depends=[rlang]; }; - attention = derive2 { name="attention"; version="0.3.0"; sha256="0fnh0chdr9zbng6jan9hhgjqzk71cyh5nqv7325w8layqzld095k"; depends=[]; }; + attention = derive2 { name="attention"; version="0.4.0"; sha256="09c83dqdrnwxqzh3cbnyyf3y4a2qnj0lvm66iishhg58zdrz92q3"; depends=[]; }; attenuation = derive2 { name="attenuation"; version="1.0.0"; sha256="0ys4psvkvimmym4qj9cmhq8y7x10kv0x6bsvpjkrsc3l8p2g3474"; depends=[]; }; attrib = derive2 { name="attrib"; version="2021.1.2"; sha256="17s3hjp8zdl28y4h9iv854y1hli5yg1h0kqhj8v5hms1lhx7c1qq"; depends=[arm data_table dlnm ggplot2 glue lme4 lubridate magrittr mvmeta pbs progress stringr tibble tsModel]; }; auRoc = derive2 { name="auRoc"; version="0.2-1"; sha256="152jdvzigcplii5amj0mnral3g2jyy3rfsc745mx36sspw1396yx"; depends=[coda MBESS ProbYX rjags]; }; @@ -6425,14 +6533,14 @@ in with self; { audio = derive2 { name="audio"; version="0.1-11"; sha256="0z719jxmfzmh6c885m1yixjzdsl1wy17s1sw2hp4ppz4bcrzclhh"; depends=[]; }; audiometry = derive2 { name="audiometry"; version="0.3.0"; sha256="0v6lhkm298xgdny0fhpldfwj8s4ljr21w6y6sv3vvyl87qjgwx8i"; depends=[ggplot2]; }; audit = derive2 { name="audit"; version="0.1-2"; sha256="0c8b94a5am196sbvmjxya7cg4aq6fcxr8c958fxx3jmy9r4hn6s2"; depends=[]; }; - auditor = derive2 { name="auditor"; version="1.3.3"; sha256="1y6qpbc78yv2w1y9p0mczv69s661i9n2y0x09c5p3hdka7km662w"; depends=[DALEX ggplot2 ggrepel gridExtra hnp scales]; }; + auditor = derive2 { name="auditor"; version="1.3.5"; sha256="04fhgz04gl0hjw2vjymhi9pirc82pshlpv8nif8l3zclpgl795lq"; depends=[DALEX ggplot2 ggrepel gridExtra hnp scales]; }; audrex = derive2 { name="audrex"; version="2.0.1"; sha256="1ifijkbqvdjp1si14p80mbqhq7sby8qgzr181agm3da1nkmic3vp"; depends=[fANCOVA ggplot2 imputeTS lubridate Metrics modeest moments narray purrr rBayesianOptimization readr scales stringr tictoc xgboost]; }; audubon = derive2 { name="audubon"; version="0.5.1"; sha256="17x4pk2anmj5gyf6wdg9n5zyqzbmp9hvj04ngv17jxv5b047pjc9"; depends=[dplyr magrittr Matrix memoise purrr readr rlang stringi V8]; }; augSIMEX = derive2 { name="augSIMEX"; version="3.7.4"; sha256="0620yxqi160ar91shl5macn890zpc60c9nqy4w8i6m7sskv6gl3z"; depends=[Formula MASS nleqslv Rcpp]; }; augmentedRCBD = derive2 { name="augmentedRCBD"; version="0.1.7"; sha256="1gnl6i81m5w7hxi147ycr963sm661xscw0xb6wm9vcr043ddvx3p"; depends=[cli dplyr emmeans flextable ggplot2 mathjaxr moments multcomp multcompView numform officer openxlsx Rdpack reshape2 stringi]; }; - auk = derive2 { name="auk"; version="0.6.0"; sha256="1l37izfjsypq2pbbifajilhi00fpbjdkpp6ahy3nxfsc7v22ldwr"; depends=[assertthat countrycode dplyr httr magrittr readr rlang stringi stringr tidyr]; }; + auk = derive2 { name="auk"; version="0.7.0"; sha256="055blr0pbhjy0c20xh21pl1cndvxy742hmn4nlddzvd1phknfkzz"; depends=[assertthat countrycode dplyr httr magrittr readr rlang stringi stringr tidyr]; }; aum = derive2 { name="aum"; version="2023.6.14"; sha256="1y6wn8ycl4vvmzyjkyprxah7q5afa56bpj8xvgmvi6dahnfp52cq"; depends=[data_table Rcpp]; }; - ausplotsR = derive2 { name="ausplotsR"; version="2.0.3"; sha256="15bf6bxz1193q7wf729v2wg6vy3w2ml8zfznw9kgpmjqmcyhyhvk"; depends=[betapart curl ggplot2 gtools httr jose jsonlite mapdata plyr R_utils r2r stringr vegan]; }; + ausplotsR = derive2 { name="ausplotsR"; version="2.0.5"; sha256="0zxzxzhhdmzcvn2kvvmkgrizyx73h4wc7daysjsp54zv8krlh4x9"; depends=[betapart curl ggplot2 gtools httr jose jsonlite mapdata plyr progress R_utils r2r stringr vegan]; }; auth0 = derive2 { name="auth0"; version="0.2.3"; sha256="0pbnxq2f0bpj1gz8yn3wj3qn03dl08l7754k0ys7s49w2isx9y3h"; depends=[httr shiny shinyjs yaml]; }; auto_pca = derive2 { name="auto.pca"; version="0.3"; sha256="01m2ldpcxzj7fhgmr9wp4ha3gqdyh7l5bkrnw83smcbq5229hsyy"; depends=[plyr psych]; }; autoBagging = derive2 { name="autoBagging"; version="0.1.0"; sha256="01k44rgkpbbr3m2x360aq0fz2qi7nz036g5dsh2y3jy94rmddbyy"; depends=[abind caret cluster CORElearn e1071 entropy infotheo lsr MASS minerva party rpart xgboost]; }; @@ -6444,7 +6552,7 @@ in with self; { autoMFA = derive2 { name="autoMFA"; version="1.0.0"; sha256="1sbcl38cq7y7hln1qffk5s71xgg9hs7dlwyvynqf96z2z2421pw4"; depends=[abind expm MASS Matrix pracma Rdpack Rfast usethis]; }; autoMrP = derive2 { name="autoMrP"; version="1.0.3"; sha256="0fb2qsz4ibx2m21hsak87jmgrngal23y1yr4phs66vkn037pvkim"; depends=[doParallel doRNG dplyr e1071 EBMAforecast forcats foreach gbm ggplot2 glmmLasso knitr lme4 purrr rlang tibble tidyr]; }; autoRasch = derive2 { name="autoRasch"; version="0.2.2"; sha256="15vgmpvcw7hi1i5kaqj9q126qmfa54h8ay9w6wa7yxjbginp9v7c"; depends=[doParallel foreach lavaan Rcpp RcppArmadillo]; }; - autoReg = derive2 { name="autoReg"; version="0.3.2"; sha256="1isj04xphzf3r35bgzr9x1f2ra17jjw08dyjxgy8dfdmqhz2l2kh"; depends=[boot broom crayon dplyr flextable ggplot2 maxstat mice moonBook nortest officer pammtools patchwork purrr rlang scales stringr survival tidycmprsk tidyr]; }; + autoReg = derive2 { name="autoReg"; version="0.3.3"; sha256="0r26h2ik6cx21dlilpcx9a60dj1fw3zq06f2prmxw7ybk1ix19zm"; depends=[boot broom crayon dplyr flextable ggplot2 maxstat mice moonBook nortest officer pammtools patchwork purrr rlang scales stringr survival tidycmprsk tidyr]; }; autoScorecard = derive2 { name="autoScorecard"; version="0.3.0"; sha256="03zq23x7gha02zvmb5vwmv1pz54ghcfr0sk75krh59cgprx5ysl5"; depends=[corrplot discretization ggplot2 infotheo ROCR rpart]; }; autoTS = derive2 { name="autoTS"; version="0.9.11"; sha256="1mwpazynp5hdc2ccnhvddkajfcd4qam23pvjl9accq1rnxzxkiyv"; depends=[dplyr forecast ggplot2 lubridate magrittr plotly prophet RcppRoll rlang shiny shinycssloaders tidyr]; }; autocart = derive2 { name="autocart"; version="1.4.5"; sha256="1zgcmrm4dkdnr130hwwka2nwdczgvc3jc9hxrb6nfs8ijb24gl36"; depends=[fields mgcv Rcpp RcppArmadillo RcppParallel]; }; @@ -6460,8 +6568,8 @@ in with self; { autoplotly = derive2 { name="autoplotly"; version="0.1.4"; sha256="1z577jvadgiz028z7x0786d3qhlkrvv9i34xmllizvg94kxv3bl1"; depends=[ggfortify ggplot2 plotly]; }; autoshiny = derive2 { name="autoshiny"; version="0.0.3"; sha256="0hwrsc08lq6zyx869qmiyd0fc83wqfyzx65a3s2j2xnzf4wwzgbq"; depends=[shiny]; }; autostsm = derive2 { name="autostsm"; version="3.1.2"; sha256="05nsvxcybckpv4y289ddh6rkzfmbjhf49db4nkwj9il2429c9v6c"; depends=[data_table doSNOW foreach forecast ggplot2 ggrepel gridExtra kalmanfilter lmtest lubridate maxLik progress sandwich strucchange]; }; - autothresholdr = derive2 { name="autothresholdr"; version="1.4.1"; sha256="1n2rag3aqd716nxp3vnc91rfimi24bg1imsa1aarynfh7mxi5a7a"; depends=[checkmate ijtiff magrittr purrr Rcpp rlang strex stringr]; }; - av = derive2 { name="av"; version="0.8.6"; sha256="071ahvb2z4in16b98aj2gl0qrsfnqprn67zf5ilj7bj4c1b6pmrx"; depends=[]; }; + autothresholdr = derive2 { name="autothresholdr"; version="1.4.2"; sha256="1fkny4i1fpy5fkya52cw4bzpdi236smq4qq23q1zdba3srmpyzsl"; depends=[checkmate ijtiff magrittr purrr Rcpp rlang strex stringr]; }; + av = derive2 { name="av"; version="0.9.0"; sha256="0zyp6dh4kl717w68i417byya5j43h44rql11ihi88x47c9dxbirp"; depends=[]; }; available = derive2 { name="available"; version="1.1.0"; sha256="1j6z0zwd7xjk6j6wk74fjq3nhx9gk7ys09i543gakcskmdm59dw4"; depends=[cli clisymbols crayon desc glue jsonlite memoise SnowballC stringdist tibble tidytext yesno]; }; avar = derive2 { name="avar"; version="0.1.3"; sha256="0zpdgkshadzi01llqcsddzzhpywycsy5411rcvsgmm8wsi0n4khs"; depends=[Rcpp RcppArmadillo simts]; }; averisk = derive2 { name="averisk"; version="1.0.3"; sha256="02j27d4jxgy2bk5sgxp1xdfyqr321civs99qj0g8cp34gwqk0j3m"; depends=[MASS]; }; @@ -6489,17 +6597,16 @@ in with self; { azuremlsdk = derive2 { name="azuremlsdk"; version="1.10.0"; sha256="0s64kjrmcdnjdwh5mdm5vxgvrl9ghvfv6bair7qfzz32jlab99m0"; depends=[DT ggplot2 htmltools plyr reticulate rstudioapi servr shiny shinycssloaders]; }; bReeze = derive2 { name="bReeze"; version="0.4-3"; sha256="17nc6qvw9l6sq8knd1mk193md2y3z1jlcjymqzl389yxj8s0i2il"; depends=[lubridate]; }; bSims = derive2 { name="bSims"; version="0.3-0"; sha256="055hqa5w4gaqz9mms9yj85wg0pgl6xa568nbjxm4qc75rsy91qg5"; depends=[deldir intrval MASS mefa4 pbapply]; }; - bWGR = derive2 { name="bWGR"; version="2.2.3"; sha256="0cwl7vaal3mmgcwly353lpyl82avjggxrlf18sv3imfva5w63l3s"; depends=[Matrix Rcpp RcppEigen]; }; + bWGR = derive2 { name="bWGR"; version="2.2.5"; sha256="1cxypw6fdg0myk2idhl9jgx40yfrg5hh9bcciw9fg2d6p337w602"; depends=[Matrix Rcpp RcppEigen]; }; baRcodeR = derive2 { name="baRcodeR"; version="0.1.7"; sha256="199cdbwphpz6ds19841s32bm2rjd7b6v484bvaskw94z0d8bcn6w"; depends=[DT miniUI qrcode rstudioapi shiny]; }; baRulho = derive2 { name="baRulho"; version="1.0.6"; sha256="17g3xs0lxdpbbi52x27r00vfdgxdhjblyy939scm3c5z01fhxxnb"; depends=[fftw pbapply seewave tuneR warbleR]; }; babel = derive2 { name="babel"; version="0.3-0"; sha256="1iwvx69051yhlxbcl6bypvc3mcih0q8bf3i29r3i79356hp12xqa"; depends=[edgeR]; }; babelgene = derive2 { name="babelgene"; version="22.9"; sha256="1ql5r1chl5ajzy9ppcnk755ia3m2a8n08m837dnm2ll3nzf02rnf"; depends=[dplyr rlang]; }; - babelmixr2 = derive2 { name="babelmixr2"; version="0.1.1"; sha256="1iwi4z4xsa0sv334yjf5cvh88408icgpsw19rj1mp31wa2pdj36h"; depends=[checkmate cli digest lotri nlmixr2 nlmixr2est nonmem2rx qs Rcpp RcppArmadillo RcppEigen rex rxode2 rxode2parse]; }; + babelmixr2 = derive2 { name="babelmixr2"; version="0.1.2"; sha256="0b6xa7hwx9h5n7z8xw4q7shwpzjf7kf9cfrsy68qvm8mhns0j9x1"; depends=[checkmate cli digest lotri nlmixr2 nlmixr2est nonmem2rx qs Rcpp RcppArmadillo RcppEigen rex rxode2 rxode2parse]; }; babelwhale = derive2 { name="babelwhale"; version="1.2.0"; sha256="0m5q83ykz5w1fsjsk2vyrnv21cg4n075kbvfvw4k22c61p78shdl"; depends=[crayon digest dplyr dynutils fs glue processx purrr]; }; - babette = derive2 { name="babette"; version="2.3.3"; sha256="0c9v6dm3n9bnr5x4nln9a51dff557vrhxdfji9xikwnz0vv8656v"; depends=[beastier beautier mauricer phangorn remotes stringr tracerer xml2]; }; babsim_hospital = derive2 { name="babsim.hospital"; version="11.8.8"; sha256="03kd9kvqq0jy1f7qjbbmm5zn8w0nqwwdpan64ymyzmsxb59407cj"; depends=[checkmate curl data_table dplyr ggplot2 golem igraph lubridate markovchain padr plyr rvest scales simmer slider SPOT testthat xml2]; }; babynames = derive2 { name="babynames"; version="1.0.1"; sha256="1gcpd6lncqwjz05z98ra6hcc8q966l2594ylkg50avndild89n3h"; depends=[tibble]; }; - babynamesIL = derive2 { name="babynamesIL"; version="0.0.1"; sha256="0drrxpyyvqs7n3j97idz0l13cw8mxpf7p9nv3bggwxdnffrdvn04"; depends=[tibble]; }; + babynamesIL = derive2 { name="babynamesIL"; version="0.0.2"; sha256="0g8p5afhsh0piip0i8jxd1s52bk4zb1z5bf3chdkcbxr8z0d42f6"; depends=[tibble]; }; bacistool = derive2 { name="bacistool"; version="1.0.0"; sha256="1hby2bmxbc8qgjzgkp2flv89lpzzvg3vr7s98989ayjmv4vgmqaf"; depends=[rjags]; }; backShift = derive2 { name="backShift"; version="0.1.4.3"; sha256="1dhmq51w07vcqlngsb04ip0wqbgqq2xdfdm1w82r082f07ywqb16"; depends=[clue ggplot2 igraph MASS matrixcalc reshape2]; }; backbone = derive2 { name="backbone"; version="2.1.2"; sha256="0zd8v9922l1jjya04833frhd6fk66rdlfwxwl9rqhwgm9h6lq3mh"; depends=[igraph Matrix Rcpp]; }; @@ -6519,17 +6626,18 @@ in with self; { baizer = derive2 { name="baizer"; version="0.8.0"; sha256="06f7g71pzc4y2vnc3fj33s1xl6plxrkd2y73xi24pk81lm5wgf9a"; depends=[curl diffobj dplyr magrittr openxlsx purrr readr readxl rematch2 rlang rmarkdown seriation stringr tibble tidyr vctrs]; }; bakR = derive2 { name="bakR"; version="1.0.0"; sha256="19c791aa7i13iha33aa0wg1q180q4isb6bnp2mhb0y6206pmvd0g"; depends=[BH data_table dplyr ggplot2 Hmisc magrittr purrr Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders tidyr]; }; bakeoff = derive2 { name="bakeoff"; version="0.2.0"; sha256="0i40vnwgy4db8flfcx23zh5a7mmp4dhckhzayj34smqfmfm5xzkl"; depends=[]; }; + baker = derive2 { name="baker"; version="1.0.2"; sha256="07ah24n5j5xdppfmgcgn96h8f55zxzfmi9bj1n9yyhd3rh6p06s9"; depends=[abind binom coda ggplot2 ggpubr gridExtra lubridate mgcv mvbutils R2jags reshape2 rjags robCompositions shinydashboard shinyFiles]; }; baldur = derive2 { name="baldur"; version="0.0.3"; sha256="13nl5apdmb1pm32d58qq04vc2xngc35n6cv4sivf2s34yk4k0n4c"; depends=[BH dplyr ggplot2 lifecycle magrittr multidplyr purrr Rcpp RcppEigen RcppParallel Rdpack rlang rstan rstantools StanHeaders stringr tibble tidyr viridisLite]; }; bama = derive2 { name="bama"; version="1.3.0"; sha256="1ydm9p6msmgi74rhrji2j14qy7cg7fqgg4ffm9rz293k27n5ghnn"; depends=[BH Rcpp RcppArmadillo RcppDist]; }; - bambooHR = derive2 { name="bambooHR"; version="0.1.0"; sha256="1m9kzr698lgcilmr5w5zs6q9rgpcdvqiavrhh6c4ar6ii07n274s"; depends=[cli curl dplyr fs glue httr janitor jsonlite lubridate magrittr purrr rlang stringr testthat tibble tidyr withr]; }; + bambooHR = derive2 { name="bambooHR"; version="0.1.1"; sha256="0d4jw8ymrgi20il0ipszs18a7x7q7xb3jpqmp1zrb5gigvabb9x2"; depends=[cli curl dplyr glue httr janitor jsonlite lubridate magrittr purrr rlang stringr tibble tidyr withr]; }; bamdit = derive2 { name="bamdit"; version="3.4.0"; sha256="0x7dl2f8qg8df07g4k692501rqn3q5zf12npx9zbbbvv7zb23rlf"; depends=[ggExtra ggplot2 gridExtra MASS R2jags rjags]; }; - bamlss = derive2 { name="bamlss"; version="1.2-1"; sha256="1iip433vbiynw3fiys0134r9z184krc5i5y2mhb0zvz17y3zln9p"; depends=[coda colorspace distributions3 Formula Matrix MBA mgcv mvtnorm sp survival]; }; + bamlss = derive2 { name="bamlss"; version="1.2-2"; sha256="0kbv2wsyd2r1bcylqcp4apwlgcd3v7kw5f0pgiwqz7jjaqgcahzd"; depends=[coda colorspace distributions3 Formula Matrix MBA mgcv mvtnorm sp survival]; }; bamm = derive2 { name="bamm"; version="0.4.3"; sha256="1dda2inq8afcp09qwqjfkg572glkw9rpf6c477wcrslkcnlpkc9x"; depends=[animation dplyr furrr future igraph leaflet magrittr Matrix purrr raster Rcpp RcppArmadillo Rdpack RSpectra sp]; }; bamp = derive2 { name="bamp"; version="2.1.3"; sha256="0qzcndjdwbgiwyvc7ikb7jr0n7cmn78v56h5in22j24jjj740l2z"; depends=[abind coda]; }; bandit = derive2 { name="bandit"; version="0.5.1"; sha256="0zj98x4kwv8fr6j78vg0hzlsjd4w5l4nbazkpxqkn5yyd6g0v9h4"; depends=[boot gam]; }; banditpam = derive2 { name="banditpam"; version="1.0-1"; sha256="05ym5x178rgfvpvqgiv46ly6xnk44d0j74ykdxkzshil7aig1xfk"; depends=[R6 Rcpp RcppArmadillo]; }; bandsfdp = derive2 { name="bandsfdp"; version="1.1.0"; sha256="07w381i8cls1hf1mdl4qy3vxp7xx0czng3fl3bzrbk80mysjf47n"; depends=[]; }; - bang = derive2 { name="bang"; version="1.0.2"; sha256="1dyvv3hk6p9an2jpg76i2b7mxmdmf01mwdmkhhrk3m4yrp66dqph"; depends=[bayesplot rust]; }; + bang = derive2 { name="bang"; version="1.0.3"; sha256="1zgxgpiqszgnmbqb1dd1d3na11bam56fw9qlz1kfxkr0n8pxic0w"; depends=[bayesplot rust]; }; bangladesh = derive2 { name="bangladesh"; version="1.0.0"; sha256="1vjrashph4n8njm6yk8slywmfwxqrvdmb2ybgp23vdxjhk3rlrzl"; depends=[sf tmap]; }; bannerCommenter = derive2 { name="bannerCommenter"; version="1.0.0"; sha256="1i0b3v4n0xylcbrg9i3a28z037m27vjfg61xz2hl99wavn0bsl1j"; depends=[]; }; banter = derive2 { name="banter"; version="0.9.6"; sha256="07gzl06l7iw4czdx3il3p8kl83yw32fxa8cjx1j018z3468m1qyj"; depends=[dplyr ggplot2 gridExtra magrittr randomForest rfPermute rlang swfscMisc tibble tidyr]; }; @@ -6548,11 +6656,9 @@ in with self; { base64 = derive2 { name="base64"; version="2.0.1"; sha256="1w9m4n29xmj7px8fbmha04vq146bxfqi7ipj1ag09hlm05y6h8jd"; depends=[openssl]; }; base64enc = derive2 { name="base64enc"; version="0.1-3"; sha256="13b89fhg1nx7zds82a0biz847ixphg9byf5zl2cw9kab6s56v1bd"; depends=[]; }; base64url = derive2 { name="base64url"; version="1.4"; sha256="0n1c2b68vza1dh7sk38v6biiwm72c4jpl79kpdg1bsb0hq9qy18x"; depends=[backports]; }; - baseballDBR = derive2 { name="baseballDBR"; version="0.1.2"; sha256="0w54g1avcqamc12lmvjchlqbqck9jfjccm441k03nsql460mpydq"; depends=[dplyr magrittr rvest xml2]; }; - basecamb = derive2 { name="basecamb"; version="1.1.2"; sha256="01zigv4wp19vmp645dzvbr26nrvhv4jxpqssvfc480v0dj3mavva"; depends=[assertive_types assertthat dplyr Hmisc mice purrr survival]; }; basedosdados = derive2 { name="basedosdados"; version="0.2.2"; sha256="18gfk7hivp68mgbgx60qbpcy28ysj4llzwdji5a57rrczwffr6p0"; depends=[bigrquery cli DBI dbplyr dotenv dplyr fs glue httr magrittr purrr readr rlang scales stringr tibble typed writexl]; }; basefun = derive2 { name="basefun"; version="1.1-4"; sha256="1m258ycxc9m2xdpvqzjk0hz3fg3bwbj3z2yx6raf315ws4s2h47f"; depends=[Matrix orthopolynom polynom variables]; }; - baseline = derive2 { name="baseline"; version="1.3-4"; sha256="1kl68zvyi2zd73jy3axrvrymwn4y6l4pd62nz0fciwbgkjhz3yyx"; depends=[limSolve SparseM]; }; + baseline = derive2 { name="baseline"; version="1.3-5"; sha256="0l0llb3pi89ixkpvfg5vbvwwv3gzldf0g98rrd3vkm7q26rqmmd2"; depends=[limSolve SparseM]; }; basemaps = derive2 { name="basemaps"; version="0.0.5"; sha256="02rk613abn1919hm5kgj1jpl5aldiq282wwadxjrz9gdb782lwrk"; depends=[curl httr magick pbapply sf slippymath terra]; }; basemodels = derive2 { name="basemodels"; version="1.1.0"; sha256="07r61bzrpnwwfsxg9szfw6cf5aqsqa5fxz9j448rqlkqlg84r68h"; depends=[]; }; baseq = derive2 { name="baseq"; version="0.1.4"; sha256="012p6xs9dkvpwcqkm9qgnc5v6sg6qhwpcaqxfnwx30fpim99liai"; depends=[]; }; @@ -6594,9 +6700,10 @@ in with self; { bayesPop = derive2 { name="bayesPop"; version="10.0-1"; sha256="0jzxsqnrzvhz85wravjxbjwf6panwmylqgz99b0zknvgbf0vx6zh"; depends=[abind bayesLife bayesTFR data_table fields googleVis MortCast plyr reshape2 rworldmap wpp2012 wpp2019]; }; bayesQR = derive2 { name="bayesQR"; version="2.4"; sha256="1ci81pishhf9iv08gsnyfmx9kq9d4bswfvnwx3whykrkrlgifzmi"; depends=[]; }; bayesROE = derive2 { name="bayesROE"; version="0.1"; sha256="05darwx45bv6p9qscnw169jza4yd3m2d5bgpr35yil7p68dl0w2b"; depends=[colourpicker config ggplot2 golem scales shiny shinyBS]; }; - bayesRecon = derive2 { name="bayesRecon"; version="0.1.2"; sha256="04grkz5b6vwp5brgd6vazfinl1ikrvj8kimns0b7rw0blb3z9fm3"; depends=[lpSolve]; }; + bayesRecon = derive2 { name="bayesRecon"; version="0.2.0"; sha256="0nnj97j6i2hp9rldrfz207wmyn8rsyvjc5c14507yl1paayf3l85"; depends=[lpSolve]; }; + bayesSurv = derive2 { name="bayesSurv"; version="3.7"; sha256="1mqsnvqrivyl28d5fjh7alqsxr06wnhkjhhhrahmngmvgnmmnd1b"; depends=[coda smoothSurv survival]; }; bayesTFR = derive2 { name="bayesTFR"; version="7.4-2"; sha256="09fbyc4656dil6mqfzx7nlxxp0b95fmc73ibci60jbbzggafb51s"; depends=[coda data_table lifecycle MASS mvtnorm wpp2019]; }; - bayesWatch = derive2 { name="bayesWatch"; version="0.1.0"; sha256="1hivlzsrm5kxv11xfz5hni4dvs3104bz65syypksa7zss9qb1sqk"; depends=[BDgraph CholWishart ess ggplot2 gridExtra Hotelling MASS Matrix Rcpp RcppArmadillo RcppEigen]; }; + bayesWatch = derive2 { name="bayesWatch"; version="0.1.2"; sha256="0x2jmv46q7prlzbzygzr709mbfj7fz3ay2i1fx0p1vv7nf0k44h8"; depends=[BDgraph CholWishart ess ggplot2 gridExtra Hotelling MASS Matrix Rcpp RcppArmadillo RcppEigen]; }; bayesZIB = derive2 { name="bayesZIB"; version="0.0.5"; sha256="1265vnwmxxgahdccw81sirjb782z5pl3finf5gvmky3zgvj2p8kc"; depends=[BH ggplot2 Rcpp RcppEigen rstan rstantools StanHeaders]; }; bayesammi = derive2 { name="bayesammi"; version="0.1.0"; sha256="1vfcmk47x71c5akj3ppxzb74293pikspknkkv08f8p15v0chk7fs"; depends=[dplyr ggplot2 lme4 magrittr MASS mvtnorm rlang rstiefel scales tibble tidyr tmvtnorm]; }; bayesanova = derive2 { name="bayesanova"; version="1.5"; sha256="1h2z5r1ikrdi1j0cpzy3qdw28m1i6ddz6006amdnz2r3b0wivffm"; depends=[MCMCpack]; }; @@ -6605,18 +6712,18 @@ in with self; { bayesboot = derive2 { name="bayesboot"; version="0.2.2"; sha256="0976ryd0gbw3kpmxg2qxyp1m2swnrpa86vdhvqrqxp7fcrs8cs2z"; depends=[HDInterval plyr]; }; bayesbr = derive2 { name="bayesbr"; version="0.0.1.0"; sha256="0zx123xqw2qglwxsnq0jy56kwk6zczslagapij9aj9n5bsifbcmx"; depends=[BH coda dplyr fdrtool Formula ggplot2 loo magrittr Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders stringr tidyr]; }; bayescopulareg = derive2 { name="bayescopulareg"; version="0.1.3"; sha256="0jzj1iwd8g1kpypg6dl3anhay7kjvznfkyzri3sdf538s6vr88m5"; depends=[mvtnorm Rcpp RcppArmadillo RcppDist]; }; - bayescount = derive2 { name="bayescount"; version="0.9.99-8"; sha256="1aqj8n0jzayyym1akm2w70fw96i9j1nw4yn47jz75ckwrndjg33k"; depends=[coda rjags runjags]; }; + bayescount = derive2 { name="bayescount"; version="0.9.99-9"; sha256="1m9rsyxzf76079yzacgg1wqvylqgvmvwag043csaykn1m42kzdm3"; depends=[coda rjags runjags]; }; bayesdfa = derive2 { name="bayesdfa"; version="1.3.1"; sha256="1qdgq74ia0bs5jhv0fq4p3ihkjs74cp1hm6l4v4j59xy0jy1d0n8"; depends=[BH dplyr ggplot2 loo mgcv Rcpp RcppEigen RcppParallel reshape2 rlang rstan rstantools StanHeaders viridisLite]; }; bayesdistreg = derive2 { name="bayesdistreg"; version="0.1.0"; sha256="04slvxzbqdi2ak3dlw4lfx55rhw28js8yjmvjpy8vvgq39vcx3dq"; depends=[MASS sandwich]; }; bayesforecast = derive2 { name="bayesforecast"; version="1.0.1"; sha256="0wnz6qblm3ib7lpj860s4lhrs4gvmyrmk779r38rybfvxw4xssii"; depends=[astsa bayesplot BH bridgesampling forecast ggplot2 gridExtra loo lubridate MASS prophet Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders zoo]; }; bayesian = derive2 { name="bayesian"; version="0.0.9"; sha256="0s9mrzmmarjzy6943lkfnf0cjdgxkvk375kmdnxx43wbllx6k0xg"; depends=[brms dplyr parsnip purrr rlang tibble]; }; bayesianETAS = derive2 { name="bayesianETAS"; version="1.0.3"; sha256="0nbif0b6lcik2kh948zg5ska5mvkdsfr0dg8ndnfpscm2mp7y1dg"; depends=[]; }; - bayeslincom = derive2 { name="bayeslincom"; version="1.3.0"; sha256="0gk2ybp0m717kv986j91n5amfc282gdpcrjkq46gwzn0zhyxg8b8"; depends=[ggplot2]; }; bayeslm = derive2 { name="bayeslm"; version="1.0.1"; sha256="0mnzxzdz456qxfszl8vhnvb1875hxn8b57wi6dhr9g668da2zdin"; depends=[coda Rcpp RcppArmadillo RcppParallel]; }; bayeslongitudinal = derive2 { name="bayeslongitudinal"; version="0.1.0"; sha256="0g45ikpnbry1albb3asrzab5z3sy98yf74c64qn02d65xgafifwg"; depends=[LearnBayes MASS mvtnorm]; }; bayesm = derive2 { name="bayesm"; version="3.1-6"; sha256="1d9wp7yr5hadyv48f51xqa5yzfnhh01n813sivwla209vjf2pmqp"; depends=[Rcpp RcppArmadillo]; }; bayesmeta = derive2 { name="bayesmeta"; version="3.3"; sha256="004m85gsxs0hzwyn3p24r917pp9451wmfk8ggnnc4kv5bls30dm6"; depends=[forestplot metafor mvtnorm numDeriv]; }; bayesmix = derive2 { name="bayesmix"; version="0.7-6"; sha256="0gzzzgjbz4aw2zrd5grvd1r0zlycxkgyq4hj1mcbwkfs2dd00msk"; depends=[coda rjags]; }; + bayesmlogit = derive2 { name="bayesmlogit"; version="1.0.1"; sha256="1958kyagp41ji9xlwr03g6yv4jrd68kzc7g2hm0wgjdrksifmwp8"; depends=[dplyr ggplot2 magrittr]; }; bayesmove = derive2 { name="bayesmove"; version="0.2.1"; sha256="1l6i8qh7l53x0133gjc5jvri4vnnfviq9y3mcr1kfa5j84gfnmsf"; depends=[dplyr dygraphs furrr future ggplot2 leaflet lubridate magrittr MCMCpack progress progressr purrr Rcpp RcppArmadillo rlang sf shiny tictoc tidyr]; }; bayesnec = derive2 { name="bayesnec"; version="2.1.1.0"; sha256="02ahcaj72r0md6a2pj8ffz42xpv37hsvfixay57rc5sbdbics9gc"; depends=[brms chk dplyr evaluate formula_tools ggplot2 loo purrr rlang tibble tidyr tidyselect]; }; bayesplay = derive2 { name="bayesplay"; version="0.9.3"; sha256="1gc5gfyd03rir3yrjsqj6448wvbw49n6c789hzfqwignk3vjc555"; depends=[gginnards]; }; @@ -6629,19 +6736,18 @@ in with self; { bayestestR = derive2 { name="bayestestR"; version="0.13.1"; sha256="0mmnifi3j29qlsj917wbdqpgpk05x3cc7111k842gsv7y34h4ir7"; depends=[datawizard insight]; }; bayesvl = derive2 { name="bayesvl"; version="0.8.5"; sha256="1gb2in8hjiqb3daqz6phn1639i6p2w641kxrm3zh4rm3d6hg6hzr"; depends=[bayesplot bnlearn coda dplyr ggplot2 reshape2 rstan StanHeaders viridis]; }; bayfoxr = derive2 { name="bayfoxr"; version="0.0.1"; sha256="1295296mbjpmd0bg1pfxvyp0az3sry6gsq9ir3l8x64w5a4qrzd5"; depends=[]; }; - baygel = derive2 { name="baygel"; version="0.2.0"; sha256="13fbhigv8xy3fdi02d5hdbm5qfw47kssm5z0hrvmrchmdnhb6y0n"; depends=[pracma Rcpp RcppArmadillo RcppProgress statmod]; }; + baygel = derive2 { name="baygel"; version="0.3.0"; sha256="05s9wnsk4fi6pczjd4jg803dwss71m7yng3ck54n3b0pm27c37yd"; depends=[Rcpp RcppArmadillo RcppProgress]; }; baymedr = derive2 { name="baymedr"; version="0.1.1"; sha256="0lsp9g9xjwwf2znh4vld41pgdn55ncvmdsyg84ifhdqzjrsgwc6f"; depends=[rlang stringr]; }; baystability = derive2 { name="baystability"; version="0.1.0"; sha256="1zv4bf5a4p21w2qpr6lcsgsxb0xv15v8p33031rsypmnbs9i80dp"; depends=[dplyr ggfortify ggplot2 lme4 magrittr MASS matrixStats reshape2 rlang rstiefel scales tibble tidyr tidyverse]; }; baytrends = derive2 { name="baytrends"; version="2.0.9"; sha256="1xkkww2mf961wdpyyxngz51i2yyhimca48vnm7s1j58p7zv3vsyz"; depends=[dataRetrieval digest dplyr fitdistrplus knitr lubridate memoise mgcv pander plyr readxl sessioninfo survival]; }; bazar = derive2 { name="bazar"; version="1.0.11"; sha256="1q2w5pvlb51lzbb5k719sf1lrhffandkfqlcvi2prw4dmq7qjxv9"; depends=[kimisc]; }; bbdetection = derive2 { name="bbdetection"; version="1.0"; sha256="1j6xcbfsrg3wcr1rpddj7ia33szn5bs0wk4mzq42d761clsr5qq8"; depends=[ggplot2 Rcpp xtable zoo]; }; - bbknnR = derive2 { name="bbknnR"; version="1.0.2"; sha256="018szrk8xskvill181jc3xji9gapn4z6ps1rfh7fgga9334726vs"; depends=[dplyr glmnet Matrix Rcpp RcppAnnoy reticulate Rtsne Seurat SeuratObject tidytable uwot]; }; + bbknnR = derive2 { name="bbknnR"; version="1.1.0"; sha256="10piswg0206vicna7zm3xnpa890rii3x04izkg3p4y7xwip3l2mn"; depends=[future glmnet magrittr Matrix Rcpp RcppAnnoy reticulate rlang Rtsne Seurat SeuratObject tidytable uwot]; }; bbl = derive2 { name="bbl"; version="1.0.0"; sha256="135i619lliy93dvgb7ymrcdh20y2b1j7s0y6awzcs3w0hbyd8j5z"; depends=[pROC RColorBrewer Rcpp]; }; bbmix = derive2 { name="bbmix"; version="1.0.0"; sha256="088878222dvqmqrg5d4ny3rrpbvjw7npzrk0fmagvhj3z5dvd6la"; depends=[BH data_table R_utils Rcpp RcppEigen rmutil rstan StanHeaders]; }; - bbmle = derive2 { name="bbmle"; version="1.0.25"; sha256="0mdj21q7k0fp4cj7la14vmcjmp49zqm57g7r6zrwmxpv0acwda46"; depends=[bdsmatrix lattice MASS Matrix mvtnorm numDeriv]; }; - bbotk = derive2 { name="bbotk"; version="0.7.2"; sha256="1gw0rkbiv93ifl9110r9sr0p9g4vg7qc11mznmmjq0a5vzmqgpm9"; depends=[checkmate data_table lgr mlr3misc paradox R6]; }; + bbmle = derive2 { name="bbmle"; version="1.0.25.1"; sha256="02xnfmjr5ax5pc69jkxmygkwvb68flrf1x8pxfw0hk7y37w0qanr"; depends=[bdsmatrix lattice MASS Matrix mvtnorm numDeriv]; }; + bbotk = derive2 { name="bbotk"; version="0.7.3"; sha256="1ddr5w7n68d3imcrm0ipgk1waml8zj4szi566dmmiqvlpzpgdr3p"; depends=[checkmate data_table lgr mlr3misc paradox R6]; }; bbreg = derive2 { name="bbreg"; version="2.0.2"; sha256="0mi2834v4cvrhvpnzkb4lgkqq993c3c1yzsxdnmny4p6yxw1q547"; depends=[expint Formula pbapply statmod]; }; - bbsBayes = derive2 { name="bbsBayes"; version="2.5.3"; sha256="0vh7idcj89l5nlgg0kf41pvs1d1lpn5r1p254afcycn0sr06ky6f"; depends=[dplyr geofacet ggplot2 ggrepel jagsUI mgcv progress rappdirs sbtools sf stringr]; }; bbw = derive2 { name="bbw"; version="0.2.0"; sha256="0gycjqn36msa6cl4zdrjv2bpv14xm8m6nsc3rfjm8mw9zjjzrw6g"; depends=[car withr]; }; bc3net = derive2 { name="bc3net"; version="1.0.4"; sha256="15dghd0v1s71h77iw8b49v5h7wcda5mb4540lfyibsdipbashv2h"; depends=[c3net igraph infotheo lattice Matrix]; }; bcROCsurface = derive2 { name="bcROCsurface"; version="1.0-6"; sha256="0g0z4z3dw4mjp4dpa0d6bz46700jibixhlh2jj62z2l7qz5140cy"; depends=[boot nnet Rcpp RcppArmadillo rgl]; }; @@ -6668,13 +6774,13 @@ in with self; { bdl = derive2 { name="bdl"; version="1.0.5"; sha256="1d55i1pn8pfnv2wcmxxifqbxlni9npv9n3xnjcgfcfhs0ixnz314"; depends=[dplyr ggplot2 ggpubr httr jsonlite magrittr progress purrr randomcoloR sf tibble tidyr tmap tmaptools]; }; bdlp = derive2 { name="bdlp"; version="0.9-2"; sha256="14fxwgcn3g6k1cdimgfp6zmsgqi4s7sh6kapnls229qiin2nijjl"; depends=[DBI GenOrd MASS MultiOrd rgl RSQLite stringdist]; }; bdots = derive2 { name="bdots"; version="1.2.5"; sha256="18sciji8xy1s53d7d5q1g5zqdn25wd7w5vyiisigf54sbz13vqg6"; depends=[data_table ggplot2 gridExtra mvtnorm nlme]; }; - bdpar = derive2 { name="bdpar"; version="3.0.3"; sha256="17xrkizwdg1jz2glmmhlk153x75kylfv0pw7dn5x85m6sbah6zb1"; depends=[digest R6 rlist]; }; - bdpopt = derive2 { name="bdpopt"; version="1.0-1"; sha256="1z7mdqklw3frsdzyhvx8s8wvblwm28fr1gca2yrivqjng0r47lx4"; depends=[coda rjags]; }; + bdpar = derive2 { name="bdpar"; version="3.1.0"; sha256="063b4wwc476gx1gsb028b0fr5agf1n9ciagl5h28zx7ap3jnxmph"; depends=[digest R6 rlist]; }; bdpv = derive2 { name="bdpv"; version="1.3"; sha256="0wcnmamqrbqwskgv2yhnxq2kb179n63c825y9hsl20rfca0ijh6m"; depends=[]; }; bdrc = derive2 { name="bdrc"; version="1.1.0"; sha256="0xkqm04q8cvrfkddw8bfsn8mh2l0h4762g6p3jg9n2psiac05yrc"; depends=[ggplot2 gridExtra rlang scales]; }; bdribs = derive2 { name="bdribs"; version="1.0.4"; sha256="19qakmdw3l8vfxkr4p1ydkyfs4cmq37lqzw7l5zx5rdn6zlhqwh4"; depends=[rjags]; }; bdscale = derive2 { name="bdscale"; version="2.0.0"; sha256="1hkkfd69g2bg2y4hicjs6bnw9f0zw74jy0dpadchnzw17lffpms3"; depends=[ggplot2 scales]; }; bdsmatrix = derive2 { name="bdsmatrix"; version="1.3-6"; sha256="1g300x11rv56f826mbv7mbb67a5xz3dv74hpjc18jh3q8gap3j7r"; depends=[]; }; + bdvis = derive2 { name="bdvis"; version="0.2.37"; sha256="0mhvc1lbnkbawx3yj9h8h4l6bwawg1dfgyjvllhknyldxy8a7bjk"; depends=[chron ggplot2 lattice maps plotrix plyr sf sqldf taxize treemap]; }; bea_R = derive2 { name="bea.R"; version="1.0.6"; sha256="15pdbwz7av8862bl144n998qk0w9rqwip9m2brdm5hj7id5xdlif"; depends=[chron colorspace data_table DT ggplot2 googleVis gtable htmltools htmlwidgets httpuv httr jsonlite magrittr munsell plyr Rcpp scales shiny shinydashboard stringi stringr xtable yaml]; }; beadplexr = derive2 { name="beadplexr"; version="0.5.0"; sha256="0n07lxwmcqn6hx7bvrqvcy5y98c4x7wbcpjlwyq66imphj711blp"; depends=[cluster dplyr drc fpc ggplot2 mclust purrr rlang tibble tidyr yaml]; }; beakr = derive2 { name="beakr"; version="0.4.3"; sha256="0l6475l5d58g5ahz4b3vrdlvl656p2rasni17gz4y1l2rd0pvvh4"; depends=[base64enc httpuv jsonlite magrittr mime R6 stringr webutils]; }; @@ -6684,12 +6790,13 @@ in with self; { beanz = derive2 { name="beanz"; version="3.1"; sha256="1rv4pil8hfykp35impw980riijwgrqxv9v528w1mmq1gyy25wjhl"; depends=[BH loo Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders survival]; }; bearishTrader = derive2 { name="bearishTrader"; version="1.0.2"; sha256="1w9q66v46ppbic684dp3wv22cykd8fvjznd53w0xp3h0fnzhb5v0"; depends=[]; }; beast = derive2 { name="beast"; version="1.1"; sha256="0ikbnzdzp2lv1nh5mxxanra81v4dl6svg3ywqcqd6wgzri70a4ry"; depends=[RColorBrewer]; }; - beastier = derive2 { name="beastier"; version="2.4.12"; sha256="14pph5cqnpb450wl5i8nbnh2gs67y4g3snzfwm8d8s0vgcqj4k98"; depends=[ape assertive beautier devtools phangorn rappdirs readr rJava stringr tibble xml2]; }; - beautier = derive2 { name="beautier"; version="2.6.9"; sha256="1z6awfw5sz30fdgjl1g0fq2amwjw0xnb5kamhfrf4xyl6hj2h60y"; depends=[ape assertive pryr rappdirs seqinr stringr testit]; }; + beastier = derive2 { name="beastier"; version="2.5"; sha256="0inycswavvp0cpgj86j95djc58fa07kg9n8f281grncjzmj8980b"; depends=[ape beautier phangorn rappdirs readr rJava rlang sessioninfo stringr tibble xml2]; }; + beautier = derive2 { name="beautier"; version="2.6.11"; sha256="1gn6hwlk58sg9jjiqccqaqv8vs0xpk87h4l02kb9j51n3jj5sg38"; depends=[ape purrr rappdirs rlang seqinr stringr]; }; bedr = derive2 { name="bedr"; version="1.0.7"; sha256="0zpqvyjgwyqawxm8qrhcv8zq2b3yxgcqkkc87br29yrl7sjb8h6j"; depends=[data_table R_utils testthat VennDiagram yaml]; }; beepr = derive2 { name="beepr"; version="1.3"; sha256="061sfld23b516jws4llml0a4jsdk4z74rll4z58l2rvahkqsdrfp"; depends=[audio stringr]; }; beeswarm = derive2 { name="beeswarm"; version="0.4.0"; sha256="016mqcbdksialkmap56rprzna9b6cd6896ml9gl2n2h8yjdk7x2i"; depends=[]; }; beezdemand = derive2 { name="beezdemand"; version="0.1.2"; sha256="0rzs0mhl8dyflfz69c98ibk5bnsaf651k72wpx4ihl1im2scapfw"; depends=[ggplot2 nls2 nlsr nlstools optimx reshape2]; }; + beezdiscounting = derive2 { name="beezdiscounting"; version="0.3.1"; sha256="07m1mjswrjcq7573drq511vzpgcj8gp8jwzzxvnc6bl4a58wh8y0"; depends=[dplyr gtools magrittr psych stringr tidyr]; }; befproj = derive2 { name="befproj"; version="0.1.1"; sha256="194kicmfxamy061zx0ljmvrlh8gm56fcmhj1j2qfrihklpab4xhx"; depends=[dplyr]; }; behaviorchange = derive2 { name="behaviorchange"; version="0.5.5"; sha256="1nvmrl5nif10kw1risfsmvdlc4q6bkcfxpw26vwanm6ks3lamdc3"; depends=[BiasedUrn data_tree DiagrammeR DiagrammeRsvg ggplot2 googlesheets4 gridExtra gtable knitr rmdpartials ufs viridis yum]; }; behavr = derive2 { name="behavr"; version="0.3.2"; sha256="01ny099m2zmvlalwiq3nqkgynnxn1mdspch15lkawwd40q8s9s4p"; depends=[data_table]; }; @@ -6714,7 +6821,7 @@ in with self; { besthr = derive2 { name="besthr"; version="0.3.2"; sha256="0mg1nm014p82n9v5f929rcrpqclqs5kh8hga8gd7h29jqykgirc0"; depends=[dplyr ggplot2 ggridges magrittr patchwork rlang stringr tibble]; }; bestridge = derive2 { name="bestridge"; version="1.0.7"; sha256="10nlk1vrzmgxfia9b3skmg5594ab5s3d64k2awyxybkz2pzz7gb1"; depends=[MASS Matrix pheatmap Rcpp RcppEigen survival]; }; betaBayes = derive2 { name="betaBayes"; version="1.0.1"; sha256="1a7ng6ym47scgj47frrhs76r6ipq6mhgf3ivbg2npqpg7hjcz2ci"; depends=[betareg Rcpp RcppArmadillo]; }; - betaDelta = derive2 { name="betaDelta"; version="1.0.3"; sha256="05sraiyfr9pncmxgm1qirxsg3qwbmcqj4z838rii274nmqsrsx58"; depends=[]; }; + betaDelta = derive2 { name="betaDelta"; version="1.0.4"; sha256="1590lxqalqg30k9zilmbddp9snig93kjxr8zvba7hlpr2zb1jayy"; depends=[numDeriv]; }; betaMC = derive2 { name="betaMC"; version="1.3.1"; sha256="0wiccdiaqmza4fgcnyf9z833rnqzrm7shb0xvajcfa8d3vpp92z0"; depends=[]; }; betaNB = derive2 { name="betaNB"; version="1.0.3"; sha256="0smjygh6z91r798b9sx7mxj1ksm66wf356jw0pfkgwmr7nxk66a7"; depends=[]; }; betaSandwich = derive2 { name="betaSandwich"; version="1.0.6"; sha256="06jjcl4ajhd1g0n9w2p3wn6pvdwxkv4rwrzbllhr8zggdbnh2j5r"; depends=[]; }; @@ -6727,10 +6834,11 @@ in with self; { betategarch = derive2 { name="betategarch"; version="3.3"; sha256="0hqvyps3lwix2fkzk18wrkhxpqhgardvib9sq1ip8gn8sn1dsi8y"; depends=[zoo]; }; bethel = derive2 { name="bethel"; version="0.2"; sha256="1zlkw672k1c5px47bpa2vk3w2906vkhvifz20h6xm7s51gmm64i0"; depends=[]; }; bets_covid19 = derive2 { name="bets.covid19"; version="1.0.0"; sha256="1pqa6zpkkcmnm9a4m3676css0fi2lp4ik6mmhfhnsr4v4kv2pq2s"; depends=[rootSolve]; }; + bexy = derive2 { name="bexy"; version="0.1.2"; sha256="053k7b9ilvsawh6ajh2v794snsw6b5qf9s7bqfl555w5ia6cl6ri"; depends=[TeachingDemos Ternary]; }; beyondWhittle = derive2 { name="beyondWhittle"; version="1.2.0"; sha256="16k8ii45fnj7vvvgc19fzpyg3idz1979xvb2g5fpc88hskcb46g2"; depends=[BH forecast ltsa MASS Rcpp RcppArmadillo]; }; bezier = derive2 { name="bezier"; version="1.1.2"; sha256="1vw5128v8h973xwa1fdm9cw2jvrldj87nd55lddlp3qsz3ag4br6"; depends=[]; }; bfast = derive2 { name="bfast"; version="1.6.1"; sha256="1vjklk7d9b0q7j348aqvspm7rn80bh06hz66r2z1qs9436ppkx5a"; depends=[forecast Rcpp Rdpack strucchangeRcpp zoo]; }; - bfp = derive2 { name="bfp"; version="0.0-46"; sha256="129pnd3hkaan26dxjs9qp49yhbq9r7mhmp780x6yzcdn74xzwfnw"; depends=[Rcpp]; }; + bfp = derive2 { name="bfp"; version="0.0-47"; sha256="0g6hd82y5kkmiwsqvhcsa3x4j12shkraacpi81lal0ci5w9lfgxi"; depends=[Rcpp]; }; bfsMaps = derive2 { name="bfsMaps"; version="1.99.3"; sha256="1sjvlfwcp52l2bpnbbalrcr978lwmkrr9kz47jvnkgy3vg9ppd14"; depends=[DescTools sf]; }; bfsl = derive2 { name="bfsl"; version="0.2.0"; sha256="10z3w1fk4va2ajvpnqp0llgw4a047iaya6xi57if1a7jd7r1jxfh"; depends=[generics]; }; bfw = derive2 { name="bfw"; version="0.4.2"; sha256="0qgq47axa0r9653d1sjm00fvfx49v28id5sngwyrgkppcngmbg9p"; depends=[circlize coda data_table dplyr ggplot2 magrittr MASS officer plyr png runjags rvg scales]; }; @@ -6749,14 +6857,15 @@ in with self; { biClassify = derive2 { name="biClassify"; version="1.3"; sha256="14z3kmpmlvnkjwpjspajdfx5951cmck4binszzdd7nqbai5f1dwv"; depends=[DAAG expm fields MASS Matrix mvtnorm Rcpp RcppArmadillo]; }; bib2df = derive2 { name="bib2df"; version="1.1.1"; sha256="0d57883df774qqwpssmly3f1gci32yc5sgwc3x8f2rjih23s1nf6"; depends=[dplyr httr humaniformat stringr]; }; biblio = derive2 { name="biblio"; version="0.0.8"; sha256="1mp4k4gw8l2fywffkkja7bl2bbgl6bjznac4nva7643hp4pj3ags"; depends=[stringr yamlme]; }; - bibliometrix = derive2 { name="bibliometrix"; version="4.1.3"; sha256="1z6y6v2pa0py3rmd1kcmxlb105sabi1w75hszzjfn1k9hbqfq27y"; depends=[bibliometrixData dimensionsR dplyr DT FactoMineR forcats ggplot2 ggrepel igraph Matrix openxlsx plotly pubmedR readr readxl rscopus shiny SnowballC stringdist stringi tidyr tidytext]; }; + bibliometrix = derive2 { name="bibliometrix"; version="4.1.4"; sha256="1m0bmafpn4mrk8hi39gsnrvfrqm4s5dmwv453rnkrsg98a2yz0n2"; depends=[bibliometrixData dimensionsR dplyr DT FactoMineR forcats ggplot2 ggrepel igraph Matrix openalexR openxlsx plotly pubmedR readr readxl rscopus shiny SnowballC stringdist stringi tidyr tidytext]; }; bibliometrixData = derive2 { name="bibliometrixData"; version="0.3.0"; sha256="0dkg5g9il95w9glzvhjdgp8z30prydspvpz5bb403vaizykwv9kl"; depends=[]; }; biblionetwork = derive2 { name="biblionetwork"; version="0.1.0"; sha256="0nhx9bk7r5l0bvj98clnmwf53ihghf48zai4nj6pcgr2rb69fvjj"; depends=[data_table Rdpack]; }; + biblioverlap = derive2 { name="biblioverlap"; version="1.0.2"; sha256="03mpw4h7z33dnmf7ain085xnlb6wjzj8vsrlr2jhm0h6fpx9880y"; depends=[dplyr ggplot2 ggVennDiagram magrittr Matrix rlang shiny stringdist UpSetR uuid]; }; bibs = derive2 { name="bibs"; version="1.1.1"; sha256="0slxqhcm4fhdmr2dj1c31zs8sgl39267179nbc59jlpb0z77z2d6"; depends=[GIGrvg]; }; bibtex = derive2 { name="bibtex"; version="0.5.1"; sha256="1l9y945qmpla68rx6dnaxc83vmvkw26cw4zzfgfsvi36wsja1hgk"; depends=[backports]; }; biclust = derive2 { name="biclust"; version="2.0.3.1"; sha256="11fcb6z5lzz6yl8hsa8ppr53i8yn8k4m19k55ynznhkw780184c7"; depends=[additivityTests colorspace flexclust ggplot2 lattice MASS tidyr]; }; biclustermd = derive2 { name="biclustermd"; version="0.2.3"; sha256="1knhz96k5giq3d16i3akl5gbxrzx3vxm97cb3ivaw835fr9zrmr5"; depends=[biclust doParallel dplyr foreach ggplot2 magrittr nycflights13 phyclust tidyr]; }; - bidask = derive2 { name="bidask"; version="1.0.0"; sha256="1f5i95bbwb2svx2gcj559x9vydwbaqba2slzsx1w4l9sfm2j79wr"; depends=[xts zoo]; }; + bidask = derive2 { name="bidask"; version="2.0.2"; sha256="0pk1gc6wssyssjm7hp52mpmqnsk4s02kv205294qzif4qlvxwvq6"; depends=[xts zoo]; }; bife = derive2 { name="bife"; version="0.7.2"; sha256="0xikxniwzcv6jc64rgx39hddqchxk6c43h45algssbz2vaxvc4zg"; depends=[data_table Formula Rcpp RcppArmadillo]; }; bifurcatingr = derive2 { name="bifurcatingr"; version="2.0.0"; sha256="1755976gx723gqy94myvh5ng7bn1qisb3488mgix27af3cmrmjfi"; depends=[fMultivar]; }; bigBits = derive2 { name="bigBits"; version="1.1"; sha256="0vakcy5ymd4b5mhz5vjbkhp82bikdajh6wag4cgzbl3vdvx85xhf"; depends=[gmp Rmpfr]; }; @@ -6766,9 +6875,9 @@ in with self; { bigMap = derive2 { name="bigMap"; version="2.3.1"; sha256="08c9s5sk672j70d6pnva7z52i4s3knkby06lva9al9n8a3jiwsvz"; depends=[BH bigmemory colorspace RColorBrewer Rcpp RcppArmadillo]; }; bigQF = derive2 { name="bigQF"; version="1.6"; sha256="01qr1cw5v330kkddmgwk4fdlm6msnqcbx1kfzw390yfwq5pr84sy"; depends=[CompQuadForm coxme Matrix svd]; }; bigQueryR = derive2 { name="bigQueryR"; version="0.5.0"; sha256="051c8rkj77dm78237dzhf3lcdawv0xv72pwfiim9bi89z9mp6f9m"; depends=[assertthat googleAuthR googleCloudStorageR httr jsonlite]; }; - bigReg = derive2 { name="bigReg"; version="0.1.2"; sha256="1hmvh5j40zpzz6c88hmikphps8rb741yvkg60dxmkfl8gxqsrp3w"; depends=[MASS Rcpp RcppArmadillo uuid]; }; + bigReg = derive2 { name="bigReg"; version="0.1.5"; sha256="08rpkskvsnmln4583074nxlkjf2qkg61v24c0lbj27rfp2ab0wzw"; depends=[MASS Rcpp RcppArmadillo uuid]; }; bigSurvSGD = derive2 { name="bigSurvSGD"; version="0.0.1"; sha256="08i6hwfr4rpvmxfa0vx8bi2dsa63iasj049ndwfn6zgvai6qaz0s"; depends=[bigmemory doParallel foreach Rcpp survival]; }; - bigalgebra = derive2 { name="bigalgebra"; version="1.1.0"; sha256="0d2paa5zl672imn4y1xjr6sbf8w1pja1bx2mzcynm0k4g8l305g5"; depends=[BH bigmemory Rcpp]; }; + bigalgebra = derive2 { name="bigalgebra"; version="1.1.1"; sha256="07xzgddnqxn8l41p79qqsvvg4rj03qdqlr3jhfpnra6c82wlhspw"; depends=[BH bigmemory Rcpp]; }; biganalytics = derive2 { name="biganalytics"; version="1.1.21"; sha256="19drir6vclzz1ffccvnkxnmiqnwmddiqm7y64pz4j6ifxpc1igfy"; depends=[BH biglm bigmemory foreach Rcpp]; }; bigassertr = derive2 { name="bigassertr"; version="0.1.6"; sha256="0bk11jinlc1cvm6aaq9mccs9i328b8s2lbwq63a42fgf1qng103p"; depends=[]; }; bigchess = derive2 { name="bigchess"; version="1.9.1"; sha256="1vdzx185y1agh1xjf7qcfi2s6l7qzm1kx6b2kr3cbz2in88bws3n"; depends=[processx]; }; @@ -6798,12 +6907,12 @@ in with self; { bigutilsr = derive2 { name="bigutilsr"; version="0.3.4"; sha256="096h0v277n39bvipfbfd730lz3qkplfnv58zmzsyy3al9f7lajxl"; depends=[bigassertr bigparallelr nabor Rcpp robustbase RSpectra]; }; bikeshare14 = derive2 { name="bikeshare14"; version="0.1.4"; sha256="1ca8w4yfw0bfqls0g1qqh8gkyk23d0mi22kavawv9wwhydxrxxjc"; depends=[]; }; bikm1 = derive2 { name="bikm1"; version="1.1.0"; sha256="1ffw7vfl7cpj6n6c3hrnn4pjnwmw623xdj469fh61q6c2ig5sq87"; depends=[ade4 ggplot2 gtools lpSolve pracma reshape2]; }; - bild = derive2 { name="bild"; version="1.2-0"; sha256="0aygx77fn2w249q6ghpxclhm9xb2ngdzrirldr3lpidg6ivc443v"; depends=[]; }; + bild = derive2 { name="bild"; version="1.2-1"; sha256="18fcfaavqdhx0n5l4mhg5ibg9wp01amxj1qin25immsx6pwmp9gb"; depends=[]; }; billboard = derive2 { name="billboard"; version="0.1.0"; sha256="1z3y8dijhc1381y91n5zq305xzm1gpvs0g4mdpfr7zrblpa8ws39"; depends=[tibble]; }; billboarder = derive2 { name="billboarder"; version="0.4.1"; sha256="0byj1ilwnmq9n9gswsnj17r8pzhm4fp6567nbz1xfmlvl3402qkn"; depends=[ggplot2 htmltools htmlwidgets jsonlite magrittr rlang scales shiny]; }; - bimets = derive2 { name="bimets"; version="3.0.1"; sha256="03g0vkmg1lcpc6v3a4apj13920iv4lrbag3q0xih0b5d5479yr57"; depends=[xts zoo]; }; + bimets = derive2 { name="bimets"; version="3.0.2"; sha256="0cnpx2c2ik9ih5hvgl91abn9xpq1xdvv2dfxsiz77dmhwk9xrpv9"; depends=[xts zoo]; }; binGroup = derive2 { name="binGroup"; version="2.2-1"; sha256="0cb7j6b0s3y56mv1967awwri0kv0rf3sr3vwf9gc2zbjggxi9ffp"; depends=[partitions Rdpack]; }; - binGroup2 = derive2 { name="binGroup2"; version="1.2.4"; sha256="1qq04i8fji8mp763afxrqlradfdxlzd3ph5d18dabfj813yxx6kz"; depends=[ggplot2 partitions rBeta2009 Rcpp RcppArmadillo Rdpack scales]; }; + binGroup2 = derive2 { name="binGroup2"; version="1.3.1"; sha256="000a8vci2sfxgbw412i0wajmnwgpx54zalcv4xhvyckh69i1z1db"; depends=[ggplot2 partitions rBeta2009 Rcpp RcppArmadillo Rdpack scales]; }; binMto = derive2 { name="binMto"; version="0.0-7"; sha256="0rg9rsdy14jx7zjv60krcz1vh0sxqimsai0wynhx2sx0kydw4ngy"; depends=[mvtnorm]; }; binancer = derive2 { name="binancer"; version="1.2.0"; sha256="1diy0g3mvzxs0jxybpk42m3ccs5qk1ynw116aaxsn5k9ch7crj3l"; depends=[data_table digest httr jsonlite logger snakecase]; }; binaryGP = derive2 { name="binaryGP"; version="0.2"; sha256="0i4xi0gxk0lamjdygyx0azdp3kfqmva1g20nl3p65w4yx77m88d6"; depends=[GPfit lhs logitnorm nloptr Rcpp RcppArmadillo]; }; @@ -6812,7 +6921,7 @@ in with self; { binda = derive2 { name="binda"; version="1.0.4"; sha256="0fgdpdjbw95rwv7l0acfb9cf7s57q5ld2vgdvrv1pxwkyi902nh4"; depends=[entropy]; }; bindata = derive2 { name="bindata"; version="0.9-20"; sha256="0smym431w755azsawwsdk6412dfj7bz3bdc3mqzam50xard4s94l"; depends=[e1071 mvtnorm]; }; bindr = derive2 { name="bindr"; version="0.1.1"; sha256="1l05fpk2yql3jka321c0bdgx6mqq9pvfrg2844lbjfpbgjkmqy3w"; depends=[]; }; - bindrcpp = derive2 { name="bindrcpp"; version="0.2.2"; sha256="0rz4ibjdjsxl99ff3ha79z7cnjmilx4rx58fk9kk7ld9xc4hf4s8"; depends=[bindr plogr Rcpp]; }; + bindrcpp = derive2 { name="bindrcpp"; version="0.2.3"; sha256="1yn9is89r76ay314s216whr0igych4r78kjz85amhwgfb9wawbb6"; depends=[bindr plogr Rcpp]; }; binequality = derive2 { name="binequality"; version="1.0.4"; sha256="19sm4gk7pnp0aq0bil3acm2jc6w26pkj11vvxzysgs1xlmsra7vg"; depends=[gamlss gamlss_cens gamlss_dist ineq survival]; }; binford = derive2 { name="binford"; version="0.1.0"; sha256="04mpdvynlm4gddybys04k0446gc9hyq0vaxr6a525p76ls5aw4b1"; depends=[]; }; binfunest = derive2 { name="binfunest"; version="0.1.0"; sha256="0gqvk9hfsskm2h6vq80hcmy08wrricdc96np8dhx1slcyqhhwz0c"; depends=[pracma]; }; @@ -6825,6 +6934,7 @@ in with self; { binomialRF = derive2 { name="binomialRF"; version="0.1.0"; sha256="1liqhnp4j3fxy552fi4yz5vmfzh5blpmxx6fa3g62dgnhcm9sy18"; depends=[data_table randomForest rlist]; }; binomialtrend = derive2 { name="binomialtrend"; version="0.0.0.3"; sha256="1rrs8sg1dfzgb6005pm5nj3fwp5fy89pjx0af59clybj6lyqp25d"; depends=[pheatmap]; }; binovisualfields = derive2 { name="binovisualfields"; version="0.1.1"; sha256="0s2p0miqjckkj4v9l0c7zsdnnq69j08p4c5sgdxvkzlv23rnrkyd"; depends=[gtools plotrix shiny]; }; + binpackr = derive2 { name="binpackr"; version="0.1.1"; sha256="1kc5cm8apijgxwncpj3vflpm2alxlyz7nj2ifa09rh4n36c17hzm"; depends=[cpp11]; }; binr = derive2 { name="binr"; version="1.1.1"; sha256="1h1zkawhzp23diav6q4i2sysf4lh3pxc0gsmh4q3vgany1wj57wy"; depends=[]; }; binsegRcpp = derive2 { name="binsegRcpp"; version="2023.8.31"; sha256="1rx8rxgzjf4bjbx6gpf70pnma05g51lg6l1z0kdswj8m3pmqnk93"; depends=[data_table Rcpp]; }; binseqtest = derive2 { name="binseqtest"; version="1.0.4"; sha256="14na719dsz9bnvcyhlclzbaxvm4sc8g3v41jmhdzgr8bfbqahgk4"; depends=[clinfun]; }; @@ -6835,13 +6945,13 @@ in with self; { bio_infer = derive2 { name="bio.infer"; version="1.3-6"; sha256="1hs11c9qpdsl1awgk3b34mcsnr8g1xpg3zd9dlrqrz6ppdqkgxmn"; depends=[]; }; bio3d = derive2 { name="bio3d"; version="2.4-4"; sha256="1scxzmh22ca0nmpkvapsdcmq3n06j2wy74ljz1g27r1k1p0ylm2n"; depends=[Rcpp]; }; bioC_logs = derive2 { name="bioC.logs"; version="1.2.1"; sha256="092hdrfkdij3s8871z4c1lb0rf5pp07ggliaz76iyfxrbvy9hcxj"; depends=[]; }; - bioOED = derive2 { name="bioOED"; version="0.2.1"; sha256="0wx58bngpzlrbbcnx8l1lqhsg51y98wcym1238p87drf64x2mj1n"; depends=[bioinactivation corrplot dplyr FME ggplot2 MEIGOR rlang tidyr tidyselect tidyverse]; }; bioPN = derive2 { name="bioPN"; version="1.2.0"; sha256="0mvqgsfc7d4h6npgg728chyp5jcsf49xhnq8cgjxfzmdayr1fwr8"; depends=[]; }; bioRad = derive2 { name="bioRad"; version="0.7.3"; sha256="0gschmraqc76yiqdn48cg1qnd0p7b6x7h2gr54a84pb4ivbn6vyy"; depends=[assertthat curl dplyr fields frictionless ggplot2 glue jsonlite lubridate lutz raster readr rhdf5 rlang sp suntools tidyr viridis viridisLite]; }; bioSNR = derive2 { name="bioSNR"; version="1.0"; sha256="19blfbw9d0did76llgffs8dyld8yr6wf4rmxmr2fb4vp1s8m2izc"; depends=[dplyr ggplot2 pracma scales]; }; bioacoustics = derive2 { name="bioacoustics"; version="0.2.8"; sha256="08qhxx7xgswjamrgg82pkg1f7w50dx9ln67d50n1p3rvrxab4061"; depends=[htmltools moments Rcpp stringr tuneR]; }; bioassays = derive2 { name="bioassays"; version="1.0.1"; sha256="1y32wxkv14l7r0f35y4hxxxh3zpw2gd4hsjmkajhmzmnvg5jdw78"; depends=[dplyr ggplot2 magrittr nplr reshape2 rlang]; }; - bioclim = derive2 { name="bioclim"; version="0.3.0"; sha256="1qiz7bwy44xlgj52cy46bg762fg3llgzzn9a2bclyx42v12z8p6q"; depends=[berryFunctions ggplot2 reshape2 rmarkdown terra]; }; + biobricks = derive2 { name="biobricks"; version="0.2.2"; sha256="0xa6pd7c4sdq4wzn8053drr063cjll7lpg5k3k146zz0z6rczg30"; depends=[]; }; + bioclim = derive2 { name="bioclim"; version="0.4.0"; sha256="15a2v5l4ydn2zsnbwkrwpfvcj5xzhwj1diqrr9vp1i42w9ci55h2"; depends=[berryFunctions ggplot2 reshape2 rmarkdown terra]; }; biocompute = derive2 { name="biocompute"; version="1.1.1"; sha256="102n8y83z8568lwil2fb28wrjkymwmw9rzvk0a4zgsx5a3l7wl01"; depends=[cli crayon curl digest httr jsonlite jsonvalidate magrittr rmarkdown stringr uuid yaml]; }; biodosetools = derive2 { name="biodosetools"; version="3.6.1"; sha256="013nqdqrv5h3swzqss2kazsp06wrs57zri3aaidy92wrd6v24bsh"; depends=[bsplus cli config dplyr ggplot2 golem magrittr MASS maxLik mixtools msm rhandsontable rlang rmarkdown shiny shinydashboard shinyWidgets tidyr]; }; biogas = derive2 { name="biogas"; version="1.23.2"; sha256="05g6nyi872skvr34kw5c71ggnnjc3fv95imc327yjqhmqmwx3m19"; depends=[]; }; @@ -6851,7 +6961,7 @@ in with self; { bioimagetools = derive2 { name="bioimagetools"; version="1.1.8"; sha256="1b7nxjis0p1hiv3w0cr3cyc2xz6sn9qbpssvlp2d7c5gm8x2gnj7"; depends=[EBImage httr tiff]; }; bioinactivation = derive2 { name="bioinactivation"; version="1.2.3"; sha256="0gz1bbakf6b23jsbvrr8314yxajxcr1akm5srgm883lrf1p5ax13"; depends=[deSolve dplyr FME ggplot2 lazyeval MASS purrr rlang]; }; biolink = derive2 { name="biolink"; version="0.1.8"; sha256="03jsvzy6fqbx3w6gs7v1mnznkqwsad3ywdb4wxp0mbaq4vrsandm"; depends=[DBI glue memoise rentrez RMySQL xml2]; }; - biomartr = derive2 { name="biomartr"; version="1.0.5"; sha256="14nw44dkyrfw43dc4zwsnvkrmdhsl131m9w1wa80j3qkbhyaypfl"; depends=[biomaRt Biostrings curl data_table downloader dplyr fs httr jsonlite philentropy purrr R_utils RCurl readr stringr tibble withr XML]; }; + biomartr = derive2 { name="biomartr"; version="1.0.7"; sha256="0ic6qbk2xmgrcc0xhxyhjafp1xbf2c5dpbqqrbkprrhynr8mq7cx"; depends=[biomaRt Biostrings curl data_table downloader dplyr fs httr jsonlite philentropy purrr R_utils RCurl readr stringr tibble withr XML]; }; biometryassist = derive2 { name="biometryassist"; version="1.1.3"; sha256="03r14hbc3hllxz5hjraq0ry38899vml6cq71ls8kdn98gi5c6gan"; depends=[agricolae cowplot curl emmeans farver ggplot2 lattice multcompView pracma rlang scales stringi]; }; biomod2 = derive2 { name="biomod2"; version="4.2-4"; sha256="0ky6wy0gj3vy0bzdvxqzc7gfgb0bshjgzs9r37y902prbl3n70f2"; depends=[abind dplyr earth foreach gbm ggplot2 MASS maxnet mda nnet PresenceAbsence pROC randomForest reshape reshape2 rpart sp terra xgboost]; }; bionetdata = derive2 { name="bionetdata"; version="1.1"; sha256="14ll1m85pcr0xycczk1y9jxiqxfy5daiigfhqn4f6sfk2afy07yr"; depends=[]; }; @@ -6862,14 +6972,15 @@ in with self; { bioseq = derive2 { name="bioseq"; version="0.1.4"; sha256="0m93s7vrpd392w2mcv3sdf5kcmpn1671ksplx1fiz7wdakck9fxq"; depends=[ape crayon dplyr pillar readr rlang stringdist stringi stringr tibble vctrs]; }; biosignalEMG = derive2 { name="biosignalEMG"; version="2.1.0"; sha256="0bbkrfqkmks4z8c7rh0k43lvm71vn3fzrw3kpj012ym77whwkvay"; depends=[signal]; }; biospear = derive2 { name="biospear"; version="1.0.2"; sha256="10y4hbncwiqpxzqvzjrmfgp804zczdgvwpjcj0dzaa0sx1njdzja"; depends=[cobs corpcor devtools glmnet grplasso MASS Matrix mboost pkgconfig plsRcox pROC PRROC RCurl survAUC survival]; }; - biostat3 = derive2 { name="biostat3"; version="0.1.8"; sha256="19qsg42nyisqfxl5y9ayd6hj82plnnqvryqkwdd6nfascn0zw44y"; depends=[MASS muhaz survival]; }; + biostat3 = derive2 { name="biostat3"; version="0.1.9"; sha256="1pq8w7xh4l1f6z9k9k022a3szhkhsyhrkzdmqqfjhwx2cymcxalp"; depends=[MASS muhaz survival]; }; biotic = derive2 { name="biotic"; version="0.1.2"; sha256="1p18jkdd263dgk90626n9awkj6m4zn1n7897596fzrzrahksa978"; depends=[]; }; biotools = derive2 { name="biotools"; version="4.2"; sha256="1dyy9mk2afjbc8g1qygy6h1aksbhndm53c4sb5mfzriydl03ibxv"; depends=[boot MASS]; }; - bipartite = derive2 { name="bipartite"; version="2.18"; sha256="1n15vs9zpq1arays1xjicfbam0k7v71afcq64skjnh9qmycyzh4v"; depends=[fields igraph MASS permute sna vegan]; }; + bipartite = derive2 { name="bipartite"; version="2.19"; sha256="0a4z5hdsr0j38bzgm7wggn4a8m2zf4fp2f82m20wckx55nvjj64z"; depends=[fields igraph MASS permute sna vegan]; }; bipartiteD3 = derive2 { name="bipartiteD3"; version="0.3.0"; sha256="1b4nw1hqw645j8blf2b1hhnar7ffc4bw0zb07ycfjqd2prnif8pd"; depends=[downloader dplyr purrr r2d3 RColorBrewer stringr tibble tidyr]; }; bipd = derive2 { name="bipd"; version="0.3"; sha256="1d8mcanmkjki3md047widfgf2hi905w24hibqsg1r7nr8d0g03yg"; depends=[coda dplyr mvtnorm rjags]; }; - biplotEZ = derive2 { name="biplotEZ"; version="1.0"; sha256="1qnidnr4aydb18dz5igqrybbmdsih1pc750l8kwn5nqi65vpbhp3"; depends=[withr]; }; - biplotbootGUI = derive2 { name="biplotbootGUI"; version="1.2"; sha256="07lrs2n6s54h97vjriszszhksdbi14s2i234kwfhg7aq47k6l0jl"; depends=[cluster dendroextras MASS matlib rgl shapes tcltk2 tkrplot]; }; + bipl5 = derive2 { name="bipl5"; version="1.0.2"; sha256="0anir5fgvac9ka5y9wfar7pbwdqd0qwx6hynlmr6jwhna57linly"; depends=[cluster crayon htmlwidgets knitr plotly]; }; + biplotEZ = derive2 { name="biplotEZ"; version="1.2.0"; sha256="0fhafa00x1vj8lvhjm10daw8an62jsycsiq31skm547ig09fccym"; depends=[ggplot2 ggrepel withr]; }; + biplotbootGUI = derive2 { name="biplotbootGUI"; version="1.3"; sha256="1z2mlfya6c4lh970p6hpf8sqhxz7wjl16d1lx2djv4cr8sj7nhdh"; depends=[cluster dendroextras MASS matlib rgl shapes tcltk2 tkrplot]; }; birankr = derive2 { name="birankr"; version="1.0.1"; sha256="1azgrzgw5bnfac8p287ir5zl6kxc6jij20p6cfc3lbbl03f8sa1k"; depends=[data_table Matrix]; }; birdring = derive2 { name="birdring"; version="1.6"; sha256="17f6hlvz6k4ya82nai7j474k55w3is8if4vckbwqq1c4lj9zfm6r"; depends=[geosphere ks lazyData raster]; }; birdscanR = derive2 { name="birdscanR"; version="0.2.0"; sha256="0vbvf9512214sgah3jsn7cdy8abkyr9pvaqaivqjrhyfpv9fvbr1"; depends=[DBI dplyr ggplot2 magrittr modi reshape2 RODBC RPostgreSQL rstudioapi sp suntools tibble tidyr]; }; @@ -6884,7 +6995,8 @@ in with self; { bite = derive2 { name="bite"; version="0.3"; sha256="00sph3pdbb9p21s3263ni4by2ivvya1sbjm9wvwx1rwjr4f31jps"; depends=[ape coda MASS phytools sm vioplot xml2]; }; bitmexr = derive2 { name="bitmexr"; version="0.3.3"; sha256="0zxym4cyxk2p9cgm8lmqfxmgb01jcyww0mm3zmhqprgpk5r0faks"; depends=[attempt curl digest dplyr httr jsonlite lubridate magrittr progress purrr rlang stringr]; }; bitops = derive2 { name="bitops"; version="1.0-7"; sha256="1i0phmq5yynla5x0frqll1gbf5ww59p3sgz1s06a354zqf9grdg9"; depends=[]; }; - bittermelon = derive2 { name="bittermelon"; version="1.1.1"; sha256="15m56fxw0sj5jfl3fn0yvqw518j8iyc9ry63x9ycfs253mc5gam8"; depends=[findpython png rappdirs Unicode]; }; + bittermelon = derive2 { name="bittermelon"; version="1.1.2"; sha256="0v1i7pmblin55vz94i68fwih9djp40wqqyibl361dwyz345j3in5"; depends=[findpython png rappdirs Unicode]; }; + bivariatemaps = derive2 { name="bivariatemaps"; version="1.2"; sha256="0ig6zf760kz1xy8d8pr3h3ccyxh6q5w1k6vvsqj5cbqbpd6hywv2"; depends=[classInt terra]; }; bivgeom = derive2 { name="bivgeom"; version="1.0"; sha256="1cn8k7q011whr4f7zig85dsrkz04614z9ns2ky6k6i16s5n3glxy"; depends=[bbmle copula]; }; bivpois = derive2 { name="bivpois"; version="1.0"; sha256="1pajy04wy11nxzy9dvpg6zpp99fb6splfv0nn8hg76kk8j3zn844"; depends=[Rfast]; }; bivrp = derive2 { name="bivrp"; version="1.2-2"; sha256="0b38nh38vgqjllb1z9627dm86yp0s06ky1g829g8kkz7rffdp2za"; depends=[MASS]; }; @@ -6894,17 +7006,18 @@ in with self; { bizicount = derive2 { name="bizicount"; version="1.3.2"; sha256="10h99fzaa7b8wyzrpjkzqnn93f48sy1s9nhpw5l971mr2qss2zzz"; depends=[DHARMa Formula MASS numDeriv pbivnorm rlang texreg]; }; bkmr = derive2 { name="bkmr"; version="0.2.2"; sha256="1bzr39a53p1xkq2fi2fphv2rpsml2z25xb1ycs63p3y7qis9zlky"; depends=[dplyr fields magrittr MASS nlme tibble tidyr tmvtnorm truncnorm]; }; bkmrhat = derive2 { name="bkmrhat"; version="1.1.3"; sha256="0l575dav5wyia37vm5j1dyljgk0k6l1hwfwsqr2gq3sb0iim4my4"; depends=[bkmr coda data_table future rstan]; }; - blackbox = derive2 { name="blackbox"; version="1.1.43"; sha256="0q543vz4alg8i1ckh3w029gj9x8dminnq9l92d165w73r8adnalq"; depends=[foreach geometry lattice MASS matrixStats nloptr numDeriv pbapply proxy rcdd Rcpp RcppEigen spaMM]; }; - blaise = derive2 { name="blaise"; version="1.3.10"; sha256="1ki2na7a7qdzv2l62r4zkcj0wz73ks63piwcisl4xsw1mcc38rhl"; depends=[dplyr readr stringr tibble]; }; + blackbox = derive2 { name="blackbox"; version="1.1.46"; sha256="03m93v5nk5zg039axkf02drdj2q165k73xk6waaiyi0b8w0sbl8l"; depends=[foreach geometry lattice MASS matrixStats nloptr numDeriv pbapply proxy rcdd Rcpp RcppEigen spaMM]; }; + blackmarbler = derive2 { name="blackmarbler"; version="0.1.1"; sha256="17n77yynvdj0gk6mv2swnygdam80ajhdj09479ib0axl0d6f80sr"; depends=[dplyr exactextractr hdf5r httr lubridate purrr raster readr sf stringr tidyr]; }; + blaise = derive2 { name="blaise"; version="1.3.11"; sha256="1ll9yqfinc2x5bb90cvgj4mc5bl4gfsmdshi5pimnjdhzwmwa9jc"; depends=[dplyr readr stringr tibble]; }; blandr = derive2 { name="blandr"; version="0.5.1"; sha256="1rqas71hlf000b3z824d8ljshf8bx91bbrzaxxnx5n3chv19w6z6"; depends=[ggplot2 jmvcore knitr R6 rmarkdown stringr]; }; blapsr = derive2 { name="blapsr"; version="0.6.1"; sha256="1vycwglrpb0d041xj3dza25am16ac80r93si8x45b5ry0aq38c46"; depends=[coda MASS Matrix RSpectra sn survival]; }; blaster = derive2 { name="blaster"; version="1.0.7"; sha256="1p0d76dzn3kkdk6r4lp3kjh06iy3r2l4zhqwr3p888gxibzfwyb0"; depends=[Rcpp]; }; blastula = derive2 { name="blastula"; version="0.3.4"; sha256="0adflcar5vly97al072pjgb187f1kw64ddna6mm5p4rihq7ckryl"; depends=[base64enc commonmark curl digest dplyr fs getPass here htmltools httr jsonlite magrittr mime rlang rmarkdown stringr uuid]; }; - blatent = derive2 { name="blatent"; version="0.1.1"; sha256="1jnf3i7s3mn99ff8yzygxys0w8qf6vrfk16iqgxh7jbivbrczysk"; depends=[coda Matrix mnormt R6 Rcpp RcppArmadillo truncnorm]; }; + blatent = derive2 { name="blatent"; version="0.1.2"; sha256="0vmybbb5xwmlmzgzyaxiiargi4fd2f661sap2wfmjw9rav89zhmv"; depends=[coda Matrix mnormt R6 Rcpp RcppArmadillo truncnorm]; }; blavaan = derive2 { name="blavaan"; version="0.5-2"; sha256="0n07qjn76fac2fn5cqvn8shqnyd7jwrxqbf3353m5nx0haq3llpk"; depends=[bayesplot BH coda future_apply lavaan loo Matrix mnormt nonnest2 Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders tmvnsim]; }; blender = derive2 { name="blender"; version="0.1.2"; sha256="1qqkfgf7fzwcz88a43cqr8bw86qda33f18dg3rv1k77gpjqr999c"; depends=[vegan]; }; blindrecalc = derive2 { name="blindrecalc"; version="1.0.1"; sha256="126mh5p1js4mm9sq3w6hs2vlx4baa6gzm9b9jybllfi751jsgjw5"; depends=[Rcpp]; }; - blindreview = derive2 { name="blindreview"; version="1.3.0"; sha256="0cjnl16limzxvs7rg17c4kx011yxvyxqqkjzglck8r1ii0dajhnv"; depends=[Cairo forsearch ggplot2 Hmisc tibble]; }; + blindreview = derive2 { name="blindreview"; version="1.3.1"; sha256="16jyrsxdmf80vil35djdm8rl4q1k5a34fy5zxymmnmqw42kjc8db"; depends=[Cairo forsearch ggplot2 Hmisc tibble]; }; blink = derive2 { name="blink"; version="1.1.0"; sha256="053nw592sglzh6fgz7hj8ra6q7lqs83hhv14kcgs67b56q8a3crb"; depends=[plyr stringdist]; }; bliss = derive2 { name="bliss"; version="1.0.4"; sha256="02kln40z10wngydn7y4x5shd2dff74gb340nhagf49k8ql9p78xw"; depends=[MASS Rcpp RcppArmadillo]; }; blm = derive2 { name="blm"; version="2022.0.0.1"; sha256="0pmh3fw5iv9xhr08gji1q5vcaaai5s2qq40wisqdrqn5xhk9rh2h"; depends=[]; }; @@ -6933,17 +7046,18 @@ in with self; { bmass = derive2 { name="bmass"; version="1.0.3"; sha256="0dafixd996lamn5kfbqpiawblalhyw1gi394j46n2sij2r209d76"; depends=[]; }; bmem = derive2 { name="bmem"; version="2.1"; sha256="0acw1xwswf5yi1a0j8pv996qcma3br0xw7a9w9mh7bx5xavlivvl"; depends=[Amelia lavaan MASS sem snowfall]; }; bmemLavaan = derive2 { name="bmemLavaan"; version="0.5"; sha256="0axwc7y7ncvmpnmdlxjdaw2kfhqklxd0zb7n22m6aw67hkqqqcg5"; depends=[Amelia lavaan MASS rsem sem snowfall]; }; + bmet = derive2 { name="bmet"; version="0.1.0"; sha256="128mnyq4jkigirf9xkpfrk4l4d8pivrj43wbaj5hizhfd84q1qzj"; depends=[MASS MCMCpack]; }; bmgarch = derive2 { name="bmgarch"; version="2.0.0"; sha256="0a0svnb7wxm9v8mzk0ld28scp51sp4rsgspxccqpkbmj31njc4d0"; depends=[BH forecast ggplot2 loo MASS Rcpp RcppEigen RcppParallel Rdpack rstan rstantools StanHeaders]; }; bmggum = derive2 { name="bmggum"; version="0.1.0"; sha256="1r0j5gklmknyan68nc3vfn96ck414v75547486ic70v2pdr3xnpf"; depends=[BH edstan ggplot2 GGUM loo Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; bmixture = derive2 { name="bmixture"; version="1.7"; sha256="09ahs2dwrbqhk4aki9291v5lr5fa9mvi087zrqjmv2057ypyv2n5"; depends=[BDgraph]; }; bmlm = derive2 { name="bmlm"; version="1.3.15"; sha256="1iig406z8whdjpbvajks2vzp1s1ay1f99r1n6qhs9xyi1z6yff2l"; depends=[BH ggplot2 Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; bmp = derive2 { name="bmp"; version="0.3"; sha256="0jd67r11bn98hjwgyr6gas423787xy7ji2hq7ay80blkkcj91xxx"; depends=[]; }; bmscstan = derive2 { name="bmscstan"; version="1.2.1.0"; sha256="05w6pz0mwqighhdl36f2ya1b4dw0xdhpfcbq6saw73ag5hvl57i9"; depends=[bayesplot ggplot2 LaplacesDemon logspline loo rstan]; }; - bmstdr = derive2 { name="bmstdr"; version="0.4.1"; sha256="16d60sk56cfychhxfkpl0m38kl1s7lhljmvfd5j1k88k8z85pabk"; depends=[BH CARBayes CARBayesST ggplot2 ggpubr inlabru MCMCpack mnormt Rcpp RcppEigen RcppParallel Rdpack rstan rstantools spBayes spTDyn spTimer StanHeaders]; }; + bmstdr = derive2 { name="bmstdr"; version="0.7.9"; sha256="0myv2mj5kp97dzvbf4sw63fzjxzpv2d82vxwiqxaqd1pllcgrzz1"; depends=[BH CARBayes CARBayesST ggplot2 ggpubr inlabru MCMCpack mnormt Rcpp RcppEigen RcppParallel Rdpack rstan rstantools spBayes spTDyn spTimer StanHeaders]; }; bnClustOmics = derive2 { name="bnClustOmics"; version="1.1.1"; sha256="1pmg0q5jay8wkn24yv3j7xrdd8k6y8yjq6crjxg22yzfbbb0ws8g"; depends=[BiDAG clue graph gRbase mclust plotrix RBGL RColorBrewer]; }; bndesr = derive2 { name="bndesr"; version="1.0.3"; sha256="0yx5grnaginmdxdi9philz24qvncr6gva01zrasl098p49dx0zpv"; depends=[curl dplyr janitor lubridate RCurl readr readxl stringr]; }; bndovb = derive2 { name="bndovb"; version="1.1"; sha256="16mvkvwnx61jrvraagvxf56pvmf5klm8lnkqq4s5y2z92kd0clgp"; depends=[dplyr factormodel MASS nnet np pracma]; }; - bnlearn = derive2 { name="bnlearn"; version="4.9"; sha256="09wj8ha7ph12s1bvc2a1ld2f9qfqabflna160y1wx1a79c7annai"; depends=[]; }; + bnlearn = derive2 { name="bnlearn"; version="4.9.1"; sha256="027fyphnalbivyysqrkczspcmyi35vccb2qppi1ipys7r45g9qai"; depends=[]; }; bnma = derive2 { name="bnma"; version="1.5.1"; sha256="178gnbpcram9b4fsim6qgvypvzp5wsg9jzvg8nf004jkm4abb37l"; depends=[coda ggplot2 igraph rjags]; }; bnmonitor = derive2 { name="bnmonitor"; version="0.1.4"; sha256="0sbpfgm7yibh84m1zmn7b1ixzc2x1m2nlms7zpxp4c6fkv2c225r"; depends=[bnlearn dplyr ggplot2 gRain gRbase purrr qgraph RColorBrewer reshape2 rlang tidyr]; }; bnnSurvival = derive2 { name="bnnSurvival"; version="0.1.5"; sha256="1d9jmfx0id4lmw122zga7hb52vlfdfqn4amhzpsmhyck99rv92j4"; depends=[pec prodlim Rcpp]; }; @@ -6964,13 +7078,13 @@ in with self; { bonn = derive2 { name="bonn"; version="1.0.2"; sha256="1z22cdizz8sgw4fry98adcjvn23ag3qvvcinbg3kmafksdk1ivmb"; depends=[httr jsonlite]; }; bonsai = derive2 { name="bonsai"; version="0.2.1"; sha256="048nfgnzsi0zz0nsxl30nsjg63nszy44881s49g9hgs3vng2vmp2"; depends=[cli dials dplyr glue parsnip purrr rlang tibble]; }; boodist = derive2 { name="boodist"; version="1.0.0"; sha256="1haplr64f5kai1y6kdxhxiayidy1mivh85dx140fya5r6fdk0shm"; depends=[BH R6 Rcpp RcppEigen RcppNumerical]; }; - bookdown = derive2 { name="bookdown"; version="0.36"; sha256="0c4pj5sg4cnz2b2kpxgr0wk1n1pf7wkn1npm76aghy4yxj29cj4y"; depends=[htmltools jquerylib knitr rmarkdown tinytex xfun yaml]; }; + bookdown = derive2 { name="bookdown"; version="0.37"; sha256="18j8ylaq5wnw1c0lif9a002kbymv04pd0i43ahmqkskkv1b13hdk"; depends=[htmltools jquerylib knitr rmarkdown tinytex xfun yaml]; }; boostingDEA = derive2 { name="boostingDEA"; version="0.1.0"; sha256="0df19q44fsv0hvda4dwq302wsh6vlalwszyh0ir66r5ryrrmhas4"; depends=[dplyr lpSolveAPI MLmetrics Rglpk]; }; boostmtree = derive2 { name="boostmtree"; version="1.5.1"; sha256="17na38k052lzjrssvxssllm9fwpnzhr29g9wwcfkbja6rv2pw9p1"; depends=[nlme randomForestSRC]; }; boot = derive2 { name="boot"; version="1.3-28.1"; sha256="0lzz08fpn80qzm197s4806hr6skanr3r3rlx6bx7zk4cripygkfl"; depends=[]; }; boot_heterogeneity = derive2 { name="boot.heterogeneity"; version="1.1.5"; sha256="0g4zkvx8krqh54xvjh1a0ybwl3v5bg3l670ycgnps8kkw32w5p1f"; depends=[HSAUR3 knitr metafor pbmcapply rmarkdown]; }; boot_pval = derive2 { name="boot.pval"; version="0.5"; sha256="0572n82402i609q0jl6p2ar1gq5jlqqssv28xs3rxsr3nza49dxv"; depends=[boot car flextable gt lme4 Rdpack rms survival]; }; - bootCT = derive2 { name="bootCT"; version="1.1.1"; sha256="172a4a2plvhwqvippwbrshbn2n237qnadl4pwx7f5bfs25ichqn0"; depends=[aod ARDL dplyr dynamac gtools pracma Rcpp RcppArmadillo stringr usethis vars]; }; + bootCT = derive2 { name="bootCT"; version="2.0.0"; sha256="0dpr5l7hpdm06qh02wjlffc2js0k7pk9bkypml0zac8wxxc2c6g6"; depends=[aod ARDL dplyr dynamac gtools magrittr pracma Rcpp RcppArmadillo stringr urca usethis vars]; }; bootComb = derive2 { name="bootComb"; version="1.1.2"; sha256="0gg07ck2nf0ddqc5nflk5ms16m3c6dlf1a77m58q581mkavj6gyb"; depends=[MASS]; }; bootES = derive2 { name="bootES"; version="1.3.0"; sha256="05brahlh7jk9n1wv4l429vf048x51v1ivvchlxfcqvky06zjwk1z"; depends=[boot]; }; bootGOF = derive2 { name="bootGOF"; version="0.1.0"; sha256="11nn4lc9wdx1z35mfpc3zkk1xr0pvvjyvjzpjlq3z4gm0hmniifz"; depends=[checkmate R6]; }; @@ -6995,9 +7109,10 @@ in with self; { boussinesq = derive2 { name="boussinesq"; version="1.0.6"; sha256="11dwc0j88zqxqwnrinc4f990vjbyv4bs16z6id6xw7yp7i2n5nla"; depends=[]; }; boutliers = derive2 { name="boutliers"; version="1.1-2"; sha256="0j2y6ndj03shssa7pgvg9cwbm5mv7ahy9kypj9z1ahskdi4xg1m1"; depends=[MASS metafor]; }; box = derive2 { name="box"; version="1.1.3"; sha256="0nqvgbs47xlkq5gq1jdx3ikvwzvq71q44ddyz8pbh0bibayhkz52"; depends=[]; }; + boxcoxmix = derive2 { name="boxcoxmix"; version="0.42"; sha256="0z4iagli47i5jd9fi849wglwj2mbrn60wikb6n041k9yrfhgccma"; depends=[npmlreg qicharts statmod]; }; boxfilter = derive2 { name="boxfilter"; version="0.2"; sha256="03qx2bsqg7kkpf2q6xrj7ap0aczgascdrnkj5bcl3aq278fahnxi"; depends=[ggplot2 gridExtra]; }; - boxly = derive2 { name="boxly"; version="0.1.0"; sha256="09k1yvlhiabsc0g07rjnw416xiglsxasrvfzhpc3k522n5p3026c"; depends=[brew crosstalk DT ggplot2 htmltools htmlwidgets metalite plotly rlang]; }; - boxplotcluster = derive2 { name="boxplotcluster"; version="0.2"; sha256="1ppsvnkyxpjmv0l1ld73lf9lxca32qgd2hpn7qi5wcjwmsh4zad2"; depends=[cluster]; }; + boxly = derive2 { name="boxly"; version="0.1.1"; sha256="0fvk95f2nn06aaxn2qq7jxr2yvsnc40806xkamryhrnmrwiphia9"; depends=[brew crosstalk DT ggplot2 htmltools htmlwidgets metalite plotly rlang uuid]; }; + boxplotcluster = derive2 { name="boxplotcluster"; version="0.3"; sha256="1c3hy8h780c11hl98vwdn614nprxd2vb3n3rv23qdcl8fld0r16h"; depends=[cluster]; }; boxplotdbl = derive2 { name="boxplotdbl"; version="1.4.0"; sha256="0yfkkafrq329l6yxbnpwm8yqidixxh7k124xjy5xa92pbng2clbd"; depends=[]; }; boxr = derive2 { name="boxr"; version="0.3.6"; sha256="1hdm4p7zx2r566zaiyw06qg3c790gsvylrvav7g9fl4i1x6qgkyk"; depends=[assertthat bit64 digest dplyr fs glue httpuv httr jsonlite lifecycle magrittr mime purrr rio rlang stringr tibble]; }; bp = derive2 { name="bp"; version="2.1.0"; sha256="0qdpm5nfx2jhc0s77x839jdmk07c88xf739dwf2n8hqhk24y0cdr"; depends=[cowplot dplyr ggplot2 gridExtra gtable lubridate magrittr tibble tidyr tidyselect]; }; @@ -7005,9 +7120,10 @@ in with self; { bpDir = derive2 { name="bpDir"; version="0.1.2"; sha256="1wkj25srsbidpcvgm6c74584ahybjy39r86dxir1vd13kbi8l120"; depends=[circular MASS plotrix]; }; bpa = derive2 { name="bpa"; version="0.1.1"; sha256="0np7q1nasrq4j7ssaipvbjgrsi9n612p9lp96frq1dgix95mcgf0"; depends=[magrittr plyr]; }; bpbounds = derive2 { name="bpbounds"; version="0.1.5"; sha256="0qzvy6a41p4nrsw91xh0bv03v8ksfv4fag365pzlwisa1ng88sqj"; depends=[]; }; + bpca = derive2 { name="bpca"; version="1.3-6"; sha256="13rb6k50527aiaydapkvjyh3c2pk1anmz537y97mx35malfh1kmd"; depends=[rgl scatterplot3d xtable]; }; bpcp = derive2 { name="bpcp"; version="1.4.2"; sha256="1xgspmknjs7cqh0iw3qgikbxpbl2qscjx9n07ib5s3z8hi282wrn"; depends=[ggplot2 survival]; }; bpgmm = derive2 { name="bpgmm"; version="1.0.9"; sha256="0wrdh4c8yws7z5zd1yl23wbja88x57x651kqbnqj70k9a1195rwc"; depends=[fabMix gtools label_switching MASS mclust mcmcse mvtnorm pgmm Rcpp RcppArmadillo]; }; - bpmnR = derive2 { name="bpmnR"; version="0.1.0"; sha256="1nrdy8szpinzv1whp627sf8khmnr911d878rn0kmp515iixnl6zr"; depends=[assertive DiagrammeR DiagrammeRsvg dplyr DT glue htmltools htmlwidgets huxtable knitr purrr readr rlang rvest stringr tidyr uuid xml2]; }; + bpmnR = derive2 { name="bpmnR"; version="0.1.1"; sha256="0cskqfib5fw34zfqms4dp53cwb7z0cricr452a4cjfw563kjhmqf"; depends=[DiagrammeR DiagrammeRsvg dplyr DT glue htmltools htmlwidgets huxtable knitr purrr readr rlang rvest stringr tidyr uuid xml2]; }; bpmnVisualizationR = derive2 { name="bpmnVisualizationR"; version="0.5.0"; sha256="135afhq1x2aqdmn609vfk0248wsqbp66lkw7wqqzsb6czpap1q90"; depends=[htmlwidgets rlang xml2]; }; bpnreg = derive2 { name="bpnreg"; version="2.0.2"; sha256="1acf7smlcg8b29ga47wpb23zpfb90iz19fjc5v0zppc8q20lgggl"; depends=[BH haven Rcpp RcppArmadillo]; }; bpp = derive2 { name="bpp"; version="1.0.4"; sha256="07vz00y9m71n3a847jpviwyy0zb59402yyklsfmyxmggjivpjshi"; depends=[mvtnorm]; }; @@ -7026,6 +7142,7 @@ in with self; { brandwatchR = derive2 { name="brandwatchR"; version="0.3.0"; sha256="10bccsaswsq06wdrxqg71amzx5rabmgfi4n074y651r2c1pyy98w"; depends=[data_table httr jsonlite]; }; brant = derive2 { name="brant"; version="0.3-0"; sha256="0rcp0am4wjlkinvmv0n5bky84v31ds28v163p5mlp343cgma2b62"; depends=[MASS Matrix]; }; brassica = derive2 { name="brassica"; version="1.0.2"; sha256="1av52p39jsv54q02v8xa7xilwmz5vzj6zy68y9m5lgl6s86r509y"; depends=[]; }; + bratteli = derive2 { name="bratteli"; version="1.0.0"; sha256="07hl2s2vcjqx4db0gksfnwdarl59a9441d0ff13zf0vj0pbaqam2"; depends=[data_table diagram gmp kantorovich]; }; bravo = derive2 { name="bravo"; version="2.3.1"; sha256="04hgjkxcjshj5n7d6pi58p5qkm8ni9zx7vnjwjh15bh1274yqqxr"; depends=[Matrix Rcpp]; }; brclimr = derive2 { name="brclimr"; version="0.1.2"; sha256="0l2gk9zqa3lh9a4343h2n8ffm2x1arp84k44ah37krpsbxsvam6j"; depends=[arrow checkmate dplyr lobstr magrittr rlang]; }; brea = derive2 { name="brea"; version="0.2.0"; sha256="0mb043fdhxrg9gyf4g55ydjx37j20394nvd4d0fmiym98lccyi04"; depends=[]; }; @@ -7036,7 +7153,7 @@ in with self; { breakpoint = derive2 { name="breakpoint"; version="1.2"; sha256="004vi1qr7iib8ykg6sp7xzv0bb841h4vsz2x0cyrhkdp41frglx9"; depends=[doParallel foreach ggplot2 MASS msm]; }; breathtestcore = derive2 { name="breathtestcore"; version="0.8.6"; sha256="1nkimschjyf8cl8cwg0kv06wagimarag92gvnq03wppbcqm560ak"; depends=[assertthat broom dplyr ggfittext ggplot2 MASS multcomp nlme purrr readr readxl signal stringr tibble tidyr xml2]; }; breathteststan = derive2 { name="breathteststan"; version="0.8.4"; sha256="1j6dqjdd1079pyvgclayl1la0qa88irr9wx31viisjjri93n7wm9"; depends=[BH dplyr purrr Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders stringr tidyr]; }; - brew = derive2 { name="brew"; version="1.0-8"; sha256="09kq14nbaw0mmpb2vbfklz786q6lyizzkyg5bg64bmj2f1d2sr8i"; depends=[]; }; + brew = derive2 { name="brew"; version="1.0-10"; sha256="13x3vnrhfcvr479r4dya61a5vcky2gb4kv2xbivy0ah39qrzg0a1"; depends=[]; }; brglm = derive2 { name="brglm"; version="0.7.2"; sha256="08shcz0j1npdn7xkhsvlzs3z4rdwq3g4rk6a4xx8wirqw8n8s2an"; depends=[profileModel]; }; brglm2 = derive2 { name="brglm2"; version="0.9.2"; sha256="0islmx4kdy22qn2cq7lpzqq6lc6mci5qly645nfdhad9001jmhsa"; depends=[enrichwith MASS Matrix nnet numDeriv]; }; briKmeans = derive2 { name="briKmeans"; version="1.0"; sha256="158q2yb4dj4vhw8warv005s3rr8svr2vpkp2insgqv8mbvz7kzwq"; depends=[boot cluster depthTools splines2]; }; @@ -7047,7 +7164,7 @@ in with self; { bridgesampling = derive2 { name="bridgesampling"; version="1.1-2"; sha256="0sry1xwiv4y52k44hq6z8y2kysp5kxgl4dix3m94svg3ladd7v2l"; depends=[Brobdingnag coda Matrix mvtnorm scales stringr]; }; brif = derive2 { name="brif"; version="1.4.1"; sha256="0zavddjs6y37ll68s0c3ap9p79disv7v54505pv6nyxqh40s22m8"; depends=[Rcpp]; }; brinton = derive2 { name="brinton"; version="0.2.7"; sha256="1z2d7a1wq5ms5j0mn2hgqvvp9x3mfvxw4llia8d0bs0mpm0jkjvn"; depends=[forcats GGally ggplot2 glue gridExtra lubridate pander patchwork RColorBrewer rmarkdown scales sm tibble]; }; - brio = derive2 { name="brio"; version="1.1.3"; sha256="1inwzvlf6zj6gi47gd0byzqv02qajb3l475z8pjvx2b1hm0r1a7a"; depends=[]; }; + brio = derive2 { name="brio"; version="1.1.4"; sha256="1s0q1qk3w3fwf7gn4xfwhf8i8yqqb6z096x6xqsj8av8924z7fqc"; depends=[]; }; briqr = derive2 { name="briqr"; version="0.1.0"; sha256="073pdk1094ng4kggzdjvihl791r2qlja1j2w3pfmh2027kn520r8"; depends=[dplyr httr jsonlite magrittr tibble]; }; brisk = derive2 { name="brisk"; version="0.1.0"; sha256="1l6m47rj25klrjil0275bnv0m149d2kjh23r8cv7zw2vhmlza7z1"; depends=[dplyr ellipsis ggplot2 hitandrun purrr rlang tidyr]; }; brlrmr = derive2 { name="brlrmr"; version="0.1.7"; sha256="0s47qz8y416x0gz91pzdpr97pmlvddwkvll454vnlafxxk9p5lds"; depends=[boot brglm MASS profileModel Rcpp]; }; @@ -7055,16 +7172,15 @@ in with self; { brms = derive2 { name="brms"; version="2.20.4"; sha256="0bq76birbaqi2387d4qv2m8vvjcki9nkc2jychz6nkhcd7mg79h0"; depends=[abind backports bayesplot bridgesampling coda future ggplot2 glue loo Matrix matrixStats mgcv nleqslv nlme posterior Rcpp rlang rstan rstantools shinystan]; }; brms_mmrm = derive2 { name="brms.mmrm"; version="0.0.2"; sha256="1l8sy9ckcq56j9wshgs55mdpr266scz43r5zqylcgr231v5zg3z2"; depends=[brms coda dplyr emmeans ggplot2 ggridges MASS posterior purrr rlang tibble tidyr tidyselect trialr zoo]; }; brmsmargins = derive2 { name="brmsmargins"; version="0.2.0"; sha256="1qdfig1cy5cf3csky995m0jybb2hyp7yq7ka67wircrln919c1nm"; depends=[bayestestR brms data_table extraoperators posterior Rcpp RcppArmadillo]; }; - brnn = derive2 { name="brnn"; version="0.9.2"; sha256="17vsvncilisjp3sjblwg0knn8l4984p4ndql6rbq3wg8n677sy9x"; depends=[Formula truncnorm]; }; + brnn = derive2 { name="brnn"; version="0.9.3"; sha256="14gqbsrmv9r5kbp4c5swrpclympchyg4fw5f0b6g767y6mm22h7m"; depends=[Formula truncnorm]; }; brokenstick = derive2 { name="brokenstick"; version="2.5.0"; sha256="0bq470kvv9084qaaaz5yicmxpljp23gb3dqijrmdwk1agqxn09mc"; depends=[coda dplyr lme4 matrixsampling rlang tidyr]; }; broman = derive2 { name="broman"; version="0.80"; sha256="02k8bxv8kpkasxn2m1z5ccvr9gg9lc8k3hskyaf7gvr4khhf575s"; depends=[ggplot2]; }; broom = derive2 { name="broom"; version="1.0.5"; sha256="14fr17cvpy6jzdffzrf46xah70xcq2nkbjyxmkyzwbz3kvpdsxwx"; depends=[backports dplyr ellipsis generics glue lifecycle purrr rlang stringr tibble tidyr]; }; broom_helpers = derive2 { name="broom.helpers"; version="1.14.0"; sha256="14vaqxv12yrvqllp8552nx68wk2qfjcy1iy7bajkspgdpwsjzhfd"; depends=[broom cli dplyr labelled lifecycle purrr rlang stringr tibble tidyr]; }; broom_mixed = derive2 { name="broom.mixed"; version="0.2.9.4"; sha256="1ck0dk5fnacvwsvhp43m983gkmskw1a7f1bjkq5hacka64lwscbn"; depends=[broom coda dplyr forcats furrr nlme purrr stringr tibble tidyr]; }; brotli = derive2 { name="brotli"; version="1.3.0"; sha256="0zivyhyf6g7lb8r919a1cc2xvi36g6cszpl9rr200nfvvw6r6zf1"; depends=[]; }; - brpop = derive2 { name="brpop"; version="0.1.5"; sha256="12ngmyqbrqv1hwyh9y8wf9dyr816fxan8vqw0r2jgymsir9c5k6s"; depends=[dplyr future magrittr multidplyr rlang]; }; - brr = derive2 { name="brr"; version="1.0.0"; sha256="050ivnqcaxiyypd1sxfpy6ianhzzmvs6c77ga40g3440cvfigkgw"; depends=[gsl hypergeo pander stringr SuppDists TeachingDemos]; }; - brsim = derive2 { name="brsim"; version="0.2"; sha256="1r6rgfh8wcsmz0ba2bz46wpkq12aiqjbmpqy6qj6m53liyad80pk"; depends=[cluster corrplot RcmdrMisc]; }; + brpop = derive2 { name="brpop"; version="0.3.0"; sha256="0wbs0r775g185q0zrlyskj5zrdkf6dbivi7lrychj9dpidl9i61i"; depends=[dplyr future magrittr multidplyr rlang]; }; + brsim = derive2 { name="brsim"; version="0.3"; sha256="15clv6gfvvfclj9wmb6hr4ljfvs28spamq9rqj12nwzz5fihyhi9"; depends=[cluster corrplot RcmdrMisc]; }; bruceR = derive2 { name="bruceR"; version="2023.9"; sha256="09i9ss1fhb4l4mypbk1jww1nscpy6g11a9miz33hykgywjkk40r4"; depends=[afex data_table dplyr effectsize emmeans ggplot2 interactions jtools lavaan lmerTest mediation MuMIn performance plyr psych rio rstudioapi stringr texreg tidyr]; }; brulee = derive2 { name="brulee"; version="0.2.0"; sha256="136dzg00and00h94w75yc5hr4xxci59ydns203ilys08hlnmjqvh"; depends=[cli coro dplyr generics ggplot2 glue hardhat rlang tibble torch]; }; brunnermunzel = derive2 { name="brunnermunzel"; version="2.0"; sha256="1sz1nx9lgl7pwgx9a5m59svajsk4qv0ajzzkw9123vrh0wydy6j3"; depends=[]; }; @@ -7077,8 +7193,10 @@ in with self; { bsearchtools = derive2 { name="bsearchtools"; version="0.0.61"; sha256="11fqz8kdhqpc3jq34vgv3frzawgsl5y0s83rb2p54yb5yhd3p68w"; depends=[Rcpp]; }; bsgof = derive2 { name="bsgof"; version="0.23.8"; sha256="0vgf61fglzlbgdk64z826nzb9rv37kw39rlk6m8rl84m3cjsw80a"; depends=[]; }; bshazard = derive2 { name="bshazard"; version="1.1"; sha256="1kidypyqlilf794mksjvhja8bmnd9hdhz91ywy0mcddgc6wbar4h"; depends=[Epi survival]; }; - bsicons = derive2 { name="bsicons"; version="0.1.1"; sha256="138rwpklmkfgzhnj42wrjai6mykg5ncxzwk5jwvgwvpwhg4cfy19"; depends=[cli htmltools rlang]; }; - bslib = derive2 { name="bslib"; version="0.5.1"; sha256="03phbr6zax3898yvdfqmrs0sjiik4pfn34ksysf95fp348in2xdi"; depends=[base64enc cachem htmltools jquerylib jsonlite memoise mime rlang sass]; }; + bsicons = derive2 { name="bsicons"; version="0.1.2"; sha256="1ifxb6qvm5m824n924pwa3f2ck33mzzbjq77jzdl36ikx4z0x47a"; depends=[cli htmltools rlang]; }; + bsitar = derive2 { name="bsitar"; version="0.1.0"; sha256="0hmw0v1qwwlavbbalc56z29f29lx2m27s5m3byqw4rsa9i76bhn1"; depends=[brms dplyr loo magrittr Rdpack rlang rstan sitar]; }; + bskyr = derive2 { name="bskyr"; version="0.1.0"; sha256="0yf1r2379n1x4p4w498ny8pj0nbxlanvrrl7q1pbli8j8kda87qa"; depends=[cli dplyr fs httr2 lubridate mime purrr rlang stringi stringr tibble tidyr]; }; + bslib = derive2 { name="bslib"; version="0.6.1"; sha256="1nrix6i5ailhhlnnv9b2rymvy0c0w3szg9f5r0d5z2fksypka9v4"; depends=[base64enc cachem htmltools jquerylib jsonlite lifecycle memoise mime rlang sass]; }; bsnsing = derive2 { name="bsnsing"; version="1.0.1"; sha256="1a1vxh1fc5vz7wk73m093bvpz9qb52cfrxcj5yiqm56v309jckzk"; depends=[Rcpp]; }; bspec = derive2 { name="bspec"; version="1.6"; sha256="19l1sagx6kn6i8mcs3i0h6rh7rwsyhphncv55jywpv4g6616kqcv"; depends=[]; }; bspline = derive2 { name="bspline"; version="2.2"; sha256="0v7kbg7h0d0s2ywvjpahk2y2ncbv8kmacdznaixxakccqbl8piip"; depends=[arrApply nlsic Rcpp RcppArmadillo]; }; @@ -7087,23 +7205,23 @@ in with self; { bspm = derive2 { name="bspm"; version="0.5.5"; sha256="07d68b8l3vxihd8wxy50rywldhdg3lwww5vab6cgdahc7vn937fl"; depends=[]; }; bspmma = derive2 { name="bspmma"; version="0.1-2"; sha256="1a3p1h7bks5yrxv791wfa680v4a6q10p59iz6wvfifhf3ndlaw49"; depends=[]; }; bsreg = derive2 { name="bsreg"; version="0.0.2"; sha256="13701llj5k7vssmgb4fvxswcf9bsc4pxjvh67znbsvrv5cmjh5x3"; depends=[Matrix R6]; }; - bssm = derive2 { name="bssm"; version="2.0.1"; sha256="19ii7hs4plgq31yiyr0258y22xckd5dv7k5dp2cwkzrr3h544ylz"; depends=[checkmate coda diagis dplyr magrittr posterior ramcmc Rcpp RcppArmadillo rlang sitmo tidyr]; }; + bssm = derive2 { name="bssm"; version="2.0.2"; sha256="121fb12n5z3w97xpj5ga1985drv3h4g7b0xy5yk9sfqfaqf92yyn"; depends=[bayesplot checkmate coda diagis dplyr posterior ramcmc Rcpp RcppArmadillo rlang sitmo tidyr]; }; bssn = derive2 { name="bssn"; version="1.0"; sha256="1brxbvcvqy8n9xpvp5kz47x5ps8hdqgnh6s49051qaylp95qm432"; depends=[ClusterR mvtnorm sn ssmn]; }; bst = derive2 { name="bst"; version="0.3-24"; sha256="1x297sv9px7ipd7a6xprlff8rgkdr2z379xsm8rfqd8xal9nxnb4"; depends=[doParallel foreach gbm rpart]; }; bstrl = derive2 { name="bstrl"; version="1.0.2"; sha256="10ncaicda2rwwrl2ykbrdhh51fziy3ahwp8z859cr2k4v19lviv0"; depends=[BRL doParallel extraDistr foreach]; }; - bsts = derive2 { name="bsts"; version="0.9.9"; sha256="0zaic91yw214bq3285kw7wj8h1jf4g1z9lahgpmikvlqhgy5744g"; depends=[Boom BoomSpikeSlab xts zoo]; }; + bsts = derive2 { name="bsts"; version="0.9.10"; sha256="1cbiha8pgb2xmpwqbgb16d1dpjj9x41wx3dzly1xxy2fs04bq0m3"; depends=[Boom BoomSpikeSlab xts zoo]; }; bsub = derive2 { name="bsub"; version="1.1.0"; sha256="112hlvg15jlzg3drfzkslaly42vnvsycn9vif0w3iaw5fzsaa954"; depends=[clisymbols crayon digest GetoptLong GlobalOptions]; }; - bsvars = derive2 { name="bsvars"; version="1.0.0"; sha256="0d5c8fjnigm4zsfzhki1vsdgc310dba716sdiag8vqq7m1r3g2yc"; depends=[GIGrvg R6 Rcpp RcppArmadillo RcppProgress RcppTN]; }; + bsvars = derive2 { name="bsvars"; version="2.1.0"; sha256="1gnjl27ik6p8zsis8fdqhwdzp2jp0kyqnidil4jgy02fiwdww6c5"; depends=[GIGrvg R6 Rcpp RcppArmadillo RcppProgress RcppTN stochvol]; }; btb = derive2 { name="btb"; version="0.2.0"; sha256="1gm03md6ky134nzmnnp054mi2w8kl4bgcgg4k65zf2cyniz4arxq"; depends=[BH dplyr magrittr mapsf Rcpp RcppArmadillo RcppParallel sf]; }; btergm = derive2 { name="btergm"; version="1.10.11"; sha256="1xyjy5ig5hf45h8axp2ykyh3n56ls47h1bjsa85k992rk0lsc4dg"; depends=[boot coda ergm igraph Matrix network ROCR sna statnet_common]; }; bubbleHeatmap = derive2 { name="bubbleHeatmap"; version="0.1.1"; sha256="0b12bhk0c65m5izp5ayy6fl4iv0jhk7hhwbnavyggawrpz23ikxr"; depends=[reshape]; }; bubblyr = derive2 { name="bubblyr"; version="0.1.2"; sha256="04agfwk6rmbhlfblfw1irqnv3yrp00zfn4qwy2169b7ypg8r55v2"; depends=[glue htmltools]; }; bucky = derive2 { name="bucky"; version="1.0.7"; sha256="1ymlpmhgvhp7n7y9dbvi6zh73y8jvr09axq4skcliam8ks2xx1pm"; depends=[lmtest sandwich]; }; - buildmer = derive2 { name="buildmer"; version="2.10.1"; sha256="1wil9gg6n6d6lwr8q0r4z18w73s7l557c2c94mm4lxk75yz7wnbk"; depends=[lme4 mgcv nlme]; }; + buildmer = derive2 { name="buildmer"; version="2.11"; sha256="0lmgzvi2jz92nps1z7cxla28ymxp5vnagikzk6dma94hycb7x2b4"; depends=[lme4 mgcv nlme]; }; buildr = derive2 { name="buildr"; version="0.1.1"; sha256="117j4z6c22d9c5aghsmqsvyjc94kr0vpandgbikl5cc4zphl7w03"; depends=[glue magrittr readr rstudioapi stringr tibble usethis]; }; bujar = derive2 { name="bujar"; version="0.2-11"; sha256="11g25sa2adlrzvs10k907c1a4anyigqd7lkd337vf8dcwrajqxa9"; depends=[bst earth elasticnet gbm mboost mda modeltools mpath rms survival]; }; bulkAnalyseR = derive2 { name="bulkAnalyseR"; version="1.1.0"; sha256="008vnkcaa26d8620i1l49mbcr7px5x16s5x2wlq1vm0jkxya4c3z"; depends=[circlize ComplexHeatmap DESeq2 dplyr DT edgeR GENIE3 ggforce ggnewscale ggplot2 ggrastr ggrepel ggVennDiagram glue gprofiler2 magrittr matrixStats noisyr preprocessCore RColorBrewer rlang scales shiny shinyjqui shinyjs shinyLP shinyWidgets stringr tibble tidyr UpSetR visNetwork]; }; - bulkreadr = derive2 { name="bulkreadr"; version="1.0.0"; sha256="0qbh3wsyafdixvwcbff0qajmy2ss6swq5m9kjzcsjai4cxahwbci"; depends=[curl dplyr fs googlesheets4 haven inspectdf lubridate magrittr openxlsx purrr readr readxl sjlabelled stringr tibble]; }; + bulkreadr = derive2 { name="bulkreadr"; version="1.1.0"; sha256="067j95cbf22zi5rrih6i46l6kdy49ak3zal69q3r98cnhv9l2cl0"; depends=[curl dplyr fs googlesheets4 haven inspectdf labelled lubridate magrittr openxlsx purrr readr readxl sjlabelled stringr tibble]; }; bulletcp = derive2 { name="bulletcp"; version="1.0.0"; sha256="1k7lw8gflih47ncz8hgsj0sxbajnkhz1k7yb7rwbdnzcki3n3jln"; depends=[assertthat dplyr mvtnorm Rdpack]; }; bulletr = derive2 { name="bulletr"; version="0.1"; sha256="181rnrp62almf08gr41qnrnq8qnbqraqdvj4zixdh8fachsq2imp"; depends=[dplyr ggplot2 plotly plyr reshape2 robustbase smoother xml2 zoo]; }; bullishTrader = derive2 { name="bullishTrader"; version="1.0.1"; sha256="0mh6skgkayjsqww4q6rpzhj0n5l3lb9wwh29gy9y08cqd91i02rs"; depends=[]; }; @@ -7125,7 +7243,8 @@ in with self; { butcher = derive2 { name="butcher"; version="0.3.3"; sha256="14zf732rcy0f1n0l7km9jx74i0dwqdf864v2510lwpkfblgnw4s7"; depends=[cli lobstr purrr rlang tibble vctrs]; }; butterflyOptions = derive2 { name="butterflyOptions"; version="1.0.1"; sha256="0kmzrk8gqyqrpp4wfsl04cff13m6aiag7d6fbq7kbb6ln8fa6as9"; depends=[dplyr ggplot2 magrittr tibble]; }; bvarsv = derive2 { name="bvarsv"; version="1.1"; sha256="1bv4fbbi8bn7sqqpjlf8w5jpgydjr15wv5v9940wc42yk792yjrx"; depends=[Rcpp RcppArmadillo]; }; - bvartools = derive2 { name="bvartools"; version="0.2.3"; sha256="1i3jmp2pgpjwc92bkb4awfmhzrp5173nv9nkw1yn9n8n5p305w6i"; depends=[coda Rcpp RcppArmadillo]; }; + bvartools = derive2 { name="bvartools"; version="0.2.4"; sha256="0klbzxqypqm5v549k56fvl67yri7bwaazf02ypsg6xyriz2a9ck4"; depends=[coda Matrix Rcpp RcppArmadillo]; }; + bvhar = derive2 { name="bvhar"; version="1.2.0"; sha256="1i4dfmb1w539fz4mgv2ldr9pwxzry5fdiz6ryx9f3af83y9z4xgg"; depends=[bayesplot doRNG dplyr foreach ggplot2 lifecycle magrittr optimParallel posterior purrr Rcpp RcppEigen tibble tidyr]; }; bvls = derive2 { name="bvls"; version="1.4"; sha256="18aaf7kk5mks3a59wwqhm1ckpn6s704l9m5nzy0x5iw0s98ijbm2"; depends=[]; }; bvpa = derive2 { name="bvpa"; version="1.0.0"; sha256="01ymikjbk29vfqh31pd6b0rnh12l26b1mia1l34kh7v81z1b04ai"; depends=[numDeriv]; }; bwd = derive2 { name="bwd"; version="0.1.0"; sha256="1ryd5cqbpns9dsis2a9vjg6fcg23284c3dr3j3l18krdshdksfr0"; depends=[]; }; @@ -7167,6 +7286,7 @@ in with self; { calendR = derive2 { name="calendR"; version="1.2"; sha256="1fkzsibjawshb4i5q941bjjn4yxkj8wcblw5ckmig3s31sjrb1yc"; depends=[dplyr forcats gggibbous ggimage ggplot2 suncalc]; }; calendRio = derive2 { name="calendRio"; version="0.2.0"; sha256="152fb5yaazb2hh99ag1aq675gc5f8xw990w55nkhxqhg6w5p0ln9"; depends=[dplyr forcats gggibbous ggimage ggplot2 suncalc]; }; calendar = derive2 { name="calendar"; version="0.0.1"; sha256="18ha6vpx2bpk8p08hajiq2d201fbqhzcycp8ks6wrr06fy04z689"; depends=[lubridate tibble]; }; + calibmsm = derive2 { name="calibmsm"; version="1.0.0"; sha256="1ys222zm5p1spnmv43af5bqhv9nxvslzzih99n1w936nwl1gvh2i"; depends=[boot dplyr ggplot2 ggpubr Hmisc magrittr mstate rms survival tidyr VGAM]; }; calibrar = derive2 { name="calibrar"; version="0.2.0"; sha256="1544bc5rhhc6d1mky7ngza00wwh63q07dkbzlwfgyavly8m9cplb"; depends=[cmaes foreach optimx]; }; calibrate = derive2 { name="calibrate"; version="1.7.7"; sha256="19kgrnsyq67iqv1biyssqi30a6v2836ql20nabpy2m692ns0jfvi"; depends=[MASS]; }; calibrateBinary = derive2 { name="calibrateBinary"; version="0.1"; sha256="1k6sl4bg05piyczpk6wsva914gcmy8viyz4423gx9i6ddflb7xdb"; depends=[gelnet GPfit kernlab randtoolbox]; }; @@ -7184,20 +7304,20 @@ in with self; { campsis = derive2 { name="campsis"; version="1.5.0"; sha256="1ipdlp1034qlz3iyiw0fshjfqcg0rxc5vjbqxln3w8pyg862s2mf"; depends=[assertthat campsismod digest dplyr furrr future ggplot2 MASS plyr progressr purrr rlang tibble tidyr]; }; campsismod = derive2 { name="campsismod"; version="1.1.0"; sha256="0f3pw5v9mjqgf7l9hnwas3w5mh8cx6f8ayiyxwyffh833a7j43dp"; depends=[assertthat dplyr magrittr plyr purrr readr tibble]; }; camsRad = derive2 { name="camsRad"; version="0.3.0"; sha256="06gar6qan1ka01ngjvbpcv649yvfga697mplwn1x6qnfr4ngb7cs"; depends=[httr xml2]; }; - camtrapR = derive2 { name="camtrapR"; version="2.2.0"; sha256="12lhw8r1r3xlazm1w3x73fq3krwpvbv6w3rsmlmksaai4nxp2fn8"; depends=[data_table generics ggplot2 lubridate overlap secr sf sp]; }; canadamaps = derive2 { name="canadamaps"; version="0.1"; sha256="1i3yjhr5p06k6id3gws5dzdhf4jy143brbfhi2z4srq67xlz5agl"; depends=[dplyr magrittr rlang rmapshaper sf]; }; canadianmaps = derive2 { name="canadianmaps"; version="1.3.0"; sha256="1sk2jf0brlz1bq3xjniif51zlhglgw83ffznkvnqnbcvcbh5ha96"; depends=[dplyr ggplot2 ggrepel RColorBrewer sf sp]; }; canaper = derive2 { name="canaper"; version="1.0.1"; sha256="12is3x3srmdf39csf8q09n2377h9my2qwy0knwc3kfjdg6f9yzs7"; depends=[ape assertr assertthat dplyr future_apply phyloregion progressr purrr tibble vegan]; }; cancensus = derive2 { name="cancensus"; version="0.5.6"; sha256="0alvwl6jy86rqqw77j0wq0xvw9c52k7w6lxa7f79l5zc87ql6709"; depends=[digest dplyr httr jsonlite rlang]; }; cancerGI = derive2 { name="cancerGI"; version="1.0.1"; sha256="1cbpxw6l09sdnf6nyw0hvhrc97awnidi72a2jsjf3v8ml012xd5f"; depends=[igraph qvalue reshape2 survival systemfit]; }; cancerTiming = derive2 { name="cancerTiming"; version="3.1.8"; sha256="1sfi8q2f5ag7iak0sf9pmqncb89w3gnxdiwjwpivkwhr28ais4mq"; depends=[gplots LearnBayes]; }; + cancerscreening = derive2 { name="cancerscreening"; version="1.0.2"; sha256="1vmskbxgrb82477vpwlhi4asxxqpvk3bva0vaqp7pfirahjkvwmy"; depends=[cli curl dplyr gargle httr2 jsonlite lubridate magrittr rlang stringr tibble tidyr withr]; }; candisc = derive2 { name="candisc"; version="0.8-6"; sha256="17bhh3jgaq5hrlwaapwpsgk7f8a3sg2cmrjd1hgfxxx0z30a6icn"; depends=[car heplots]; }; canprot = derive2 { name="canprot"; version="1.1.2"; sha256="1lwlgzy0gxp7jrak838awmqz3w0x7qd51bkyhydb1s61073w77x8"; depends=[CHNOSZ MASS rmarkdown xtable]; }; cansim = derive2 { name="cansim"; version="0.3.15"; sha256="1311yikp636r1681vkcn0phmpx3a773i9d7yp748z8845r4jdcy3"; depends=[DBI digest dplyr httr jsonlite purrr readr rlang RSQLite rvest stringr tibble xml2]; }; - canvasXpress = derive2 { name="canvasXpress"; version="1.45.4"; sha256="1a67zz85c9k8ypyjlbzaz4p36lrb20c6vav453pka676p7ff7s5p"; depends=[htmltools htmlwidgets httr jsonlite]; }; + canvasXpress = derive2 { name="canvasXpress"; version="1.46.9-1"; sha256="0zb6cgpxzd9245jzabvw9x09ziihkfjc3gx1qclpqkvdbyq85qx6"; depends=[htmltools htmlwidgets httr jsonlite]; }; canvasXpress_data = derive2 { name="canvasXpress.data"; version="1.34.2"; sha256="10fdlb1yp5x9533jdammncfrrlxzpcz9as8i0209pwzjywvxby3s"; depends=[]; }; cap = derive2 { name="cap"; version="1.0"; sha256="1pv8hskxjbp589dn7rx80yaa1ld76x1w37bss2fyrys1p3qr78aa"; depends=[MASS multigroup]; }; - cape = derive2 { name="cape"; version="3.1.1"; sha256="0srgajj77a66pxj4kghjv4hjswv8arfmxbq25mpccc0fzalz1zlp"; depends=[abind caTools corpcor doParallel evd foreach here igraph Matrix pheatmap pracma propagate qtl qtl2 qtl2convert R6 RColorBrewer regress shape yaml]; }; + cape = derive2 { name="cape"; version="3.1.2"; sha256="01bxyhn0kk07yx4012px6cys0csqgrsf2n5abdg22vr7ky7phqja"; depends=[abind caTools corpcor doParallel evd foreach here igraph Matrix pheatmap pracma propagate qtl qtl2 qtl2convert R6 RColorBrewer regress shape yaml]; }; caper = derive2 { name="caper"; version="1.0.3"; sha256="1f1mw54gv1r40wrrsznhgffdj8ggrwihiwdd8wyqccyvqm49fxjg"; depends=[ape MASS mvtnorm]; }; capitalR = derive2 { name="capitalR"; version="1.3.0"; sha256="08lvncia9mdrnw84zydf1k7336xawiirh2swziqfwx3z1n172n52"; depends=[]; }; capl = derive2 { name="capl"; version="1.42"; sha256="0w0w8m4pcclmmk56cad3f2zdfxd5vh312aja8g0c59s9n1hkdw56"; depends=[dplyr ggplot2 lubridate magrittr readxl stringr writexl]; }; @@ -7205,17 +7325,18 @@ in with self; { capm = derive2 { name="capm"; version="0.14.0"; sha256="0c3rnc1qd9c4v0jj8ihg6bdhpqvfnpafkqyqkar6fwnlvgw48z83"; depends=[circlize deSolve dplyr FME ggplot2 magrittr sf survey tidyr]; }; capn = derive2 { name="capn"; version="1.0.0"; sha256="14vfk00xyx0az3whmxjpcv1785lf0gx81w7qc54i3wcfp3i22kcr"; depends=[]; }; captr = derive2 { name="captr"; version="0.3.0"; sha256="13j2nq9hm37g4h5fjdpz7kix0sqajdd7zssjfgil06ixfmnsijkx"; depends=[curl jsonlite]; }; - capushe = derive2 { name="capushe"; version="1.1.1"; sha256="1aa76ir1kp67hiz7dr60azyc71yzslshyc640fjh0fpw0sp5kwbc"; depends=[MASS]; }; + capushe = derive2 { name="capushe"; version="1.1.2"; sha256="1mazsfdiqmhy0ywahqw49qql899ph0l6jllriz2spyp1bs98q9b7"; depends=[MASS]; }; car = derive2 { name="car"; version="3.1-2"; sha256="1j3l8r3j05769gdfrqz0n38xviq6pww1cjrgdd0fkj3sjy8k89l9"; depends=[abind carData lme4 MASS mgcv nlme nnet pbkrtest quantreg scales]; }; carData = derive2 { name="carData"; version="3.0-5"; sha256="06j52rpbqi6fj7chfjwjbwbr6slrbb7i3aygv66gnfiyndcp3rq2"; depends=[]; }; carSurv = derive2 { name="carSurv"; version="1.0.0"; sha256="0wv7lp10i4sdfqyizg77ghblp3pcp7wzhs946sm0wl6w00krav9j"; depends=[corpcor fdrtool mboost Rcpp survival]; }; - caracas = derive2 { name="caracas"; version="2.1.0"; sha256="07dka3j34k0sdvfnga0vv2cb1qvrp5j6d48ngy6cdbnxlmh34k48"; depends=[doBy magrittr Matrix reticulate]; }; + caracas = derive2 { name="caracas"; version="2.1.1"; sha256="0q967hv6hr62sqhqk8vk313g16hg75igwb7idmd8w0zsqaqvac9v"; depends=[doBy magrittr Matrix reticulate]; }; carat = derive2 { name="carat"; version="2.2.1"; sha256="0h7l448b9vxmfdvi3zq3xgzprh0nrwvm1c2bg9d4yfbz92y2ndfc"; depends=[ggplot2 gridExtra Rcpp RcppArmadillo stringr]; }; carbonate = derive2 { name="carbonate"; version="0.1.4"; sha256="01k8c49v8ybgcwdr9ipw319lxw4p14w9bzl54j1ljbajdzgzcgwk"; depends=[clipr details httpuv httr jsonlite magick R6 RSelenium rtweet wdman yaml]; }; carcass = derive2 { name="carcass"; version="1.7"; sha256="09l9yk7knfjhrcpwfwmgla9ghnpg1b10aljmdl70j5kxdiafkfn7"; depends=[arm expm lme4 MASS survival]; }; card = derive2 { name="card"; version="0.1.0"; sha256="1api0j06fp5av5a48vnnm1wvwdcskynf0xsj9pb41njxdh9v8daf"; depends=[broom data_table dplyr generics ggplot2 ggrepel hardhat Hmisc lubridate lutz magrittr purrr readr recipes rlang sf stringr survival tibble tidyr]; }; cardidates = derive2 { name="cardidates"; version="0.4.9"; sha256="0b52cmg870s6icq53c6v6zjgz6w1pv02p83r8k4q0sksq5fy0ik4"; depends=[boot lattice pastecs]; }; care = derive2 { name="care"; version="1.1.11"; sha256="0897v6acxf1myncd507by8zp7aga77pschyix1m4fzgpc6z35vlm"; depends=[corpcor]; }; + care4cmodel = derive2 { name="care4cmodel"; version="1.0.0"; sha256="1c6giyg0d7fy0g1ny6yypgjpxlamakh30ghfk75r7nrlbw64cnx6"; depends=[deSolve dplyr ggplot2 purrr Rdpack rlang tibble tidyr tidyselect]; }; careless = derive2 { name="careless"; version="1.2.2"; sha256="1ncfcz5zznchcj4ndfhk9lb72l766yzsiicq5ry0m4djn74d9lva"; depends=[psych]; }; caresid = derive2 { name="caresid"; version="0.1"; sha256="1mrnvg6dl1344j880ngw9hxfg5rc82ljv25ahc1pqgs0ji8v5di2"; depends=[ca ggplot2 ggrepel]; }; caret = derive2 { name="caret"; version="6.0-94"; sha256="1a191n9qswvf8ri6id8picqgdqx15l6mp996v6f77fv0l8yfh597"; depends=[e1071 foreach ggplot2 lattice ModelMetrics nlme plyr pROC recipes reshape2 withr]; }; @@ -7224,17 +7345,17 @@ in with self; { carfima = derive2 { name="carfima"; version="2.0.2"; sha256="1n68jqn42m54xn7jq8qywrpnvggrcsgvgnlqg6nw0pgiplbkynih"; depends=[DEoptim invgamma mvtnorm pracma truncnorm]; }; cargo = derive2 { name="cargo"; version="0.4.9"; sha256="0r1c9cklnagan37kinblwvm3icq7krmyqwx9x6iss1br0a4580ch"; depends=[]; }; caribou = derive2 { name="caribou"; version="1.1-1"; sha256="1spz5ymqv8k48yg0rrdrs9ylasdif2jwcq2z33gagd6yrim1a3q3"; depends=[]; }; - caroline = derive2 { name="caroline"; version="0.9.0"; sha256="1j1s4jli3pjl815fhmhz063y8aimz1qr14gacf9rvs7hyandlcbj"; depends=[]; }; + caroline = derive2 { name="caroline"; version="0.9.2"; sha256="15q2cqfrfvy934cdfg886sp6lzmfp1bqddjpkv0bhqzpnmscbpq4"; depends=[]; }; carpenter = derive2 { name="carpenter"; version="0.2.2"; sha256="13ahhdc6f5ngrhb7slqbxzfs3wswixh0argyr6l46cv4fdkaa80s"; depends=[dplyr lazyeval magrittr pander tibble tidyr]; }; carrier = derive2 { name="carrier"; version="0.1.1"; sha256="155zna5bv6ybb6hr3lsv8dn67lkbbvn3dbihfw2s6ajkzvms9x13"; depends=[lobstr rlang]; }; cartograflow = derive2 { name="cartograflow"; version="1.0.5"; sha256="0bfw04wjd7bghw08ynnfc43yh80vhg9vpmd8qsx328860f1q5vw6"; depends=[dplyr ggplot2 igraph plotly reshape2 rlang sf]; }; cartogram = derive2 { name="cartogram"; version="0.3.0"; sha256="1vkcp8k9ajrnm14p2fqrcb4vk67503zd0w51h8amcljg3p21wzkl"; depends=[packcircles sf]; }; - cartogramR = derive2 { name="cartogramR"; version="1.0-9"; sha256="0j8xa11g3m9sp2vcx0z6lk6cpdd8f83r2qx1ibcz28h5s6nmvn69"; depends=[data_table sf]; }; + cartogramR = derive2 { name="cartogramR"; version="1.0-10"; sha256="1yviplg837pzlyzhalqybd3pjda6rr2947a766g4wvbpj4qf4b64"; depends=[data_table sf]; }; cartographer = derive2 { name="cartographer"; version="0.2.0"; sha256="0il0wc5mlz9qrb0lsbvcn4ha11wmm7hy40gbhvv86rfmh2jpp5nk"; depends=[cli dplyr rlang sf]; }; cartography = derive2 { name="cartography"; version="3.1.4"; sha256="1sww3n7glkzrpf1ki31z8309qr5496m1rm5gj3cprwif8fxfyjx5"; depends=[classInt curl png raster Rcpp sf sp]; }; casabourse = derive2 { name="casabourse"; version="2.0.0"; sha256="1s7zp44cmfnq4l9rzydqpnv9s2z4v7bvng8diz3bhzkg2zhpglnq"; depends=[gsheet R_utils RJSONIO rvest]; }; cascadeSelect = derive2 { name="cascadeSelect"; version="1.1.0"; sha256="1hb8h0v7c76jbhqp713wkmx278q9calpg1rwgdhbrdbq6caldhq7"; depends=[fontawesome htmltools reactR shiny]; }; - caschrono = derive2 { name="caschrono"; version="2.3"; sha256="06q327cqa0hb0q60zyyj6r7ydcw9big597nwmmhb8px9j9d4pxdr"; depends=[Hmisc zoo]; }; + caschrono = derive2 { name="caschrono"; version="2.4"; sha256="1z5hpmyqila2d1ils4jxq87s4x6xfskpd0xixk2fn1qalk5x2gh3"; depends=[Hmisc zoo]; }; cascsim = derive2 { name="cascsim"; version="0.4"; sha256="0n6frnbby1pjpx1z9lzxflmja2mg0dy99c5f7biakpaqi82x5xjb"; depends=[copula fitdistrplus moments R2HTML scatterplot3d]; }; caseMatch = derive2 { name="caseMatch"; version="1.1.0"; sha256="1lzskh04v2mc6487zd2sq2l14si0mpid91f6avn0i3zz19nqyqsz"; depends=[]; }; casebase = derive2 { name="casebase"; version="0.10.3"; sha256="0my4vsirm4n8qd3b81ml1hkllimz41l0819njc92znfyg7y6pj63"; depends=[data_table ggplot2 mgcv survival VGAM]; }; @@ -7242,7 +7363,7 @@ in with self; { casino = derive2 { name="casino"; version="0.1.0"; sha256="07fphn46718gr1zm0xr43mwv7yk697xrc40lxxin315cf3gm0cka"; depends=[crayon dplyr ggplot2 magrittr purrr R6 tibble tidyr]; }; cassandRa = derive2 { name="cassandRa"; version="0.1.0"; sha256="0rwqzxbflxn1iyggm3mq6pkbl61mhk4vdwqwzlwrhrvvr2ib236r"; depends=[bipartite boot dplyr ggplot2 magrittr purrr reshape2 tidyr vegan]; }; cassowaryr = derive2 { name="cassowaryr"; version="2.0.0"; sha256="1gk54haciy3vj7xj6cji1v90xh7g8790zq1rykyispx09jr2dpx3"; depends=[alphahull dplyr energy ggplot2 igraph interp magrittr progress splancs tibble tidyselect]; }; - castor = derive2 { name="castor"; version="1.7.11"; sha256="1cxjgwbsacjcc10qdch6pndjxqnk20hhamxqg0lckszvkyb67yn3"; depends=[Matrix naturalsort Rcpp RSpectra]; }; + castor = derive2 { name="castor"; version="1.8.0"; sha256="0caw206hndfzypj33w6npvppdc5hhq1q71wriqd0ck9f238rfi3c"; depends=[jsonlite Matrix naturalsort Rcpp RSpectra]; }; cat = derive2 { name="cat"; version="0.0-9"; sha256="1wz6mbjzx03267yrszjimcd8yi82z2nfwyvz6l1ry2l300hv2qfs"; depends=[]; }; cat2cat = derive2 { name="cat2cat"; version="0.4.6"; sha256="1hc656848fhkgdyi7jrnahyqfzlmkrbpinv89k169i46gvs6011x"; depends=[MASS]; }; catIrt = derive2 { name="catIrt"; version="0.5.1"; sha256="1wagk9f9mvf3b5yvwpas9yqjzpcp786d37wn71jj1af0khry8k62"; depends=[numDeriv]; }; @@ -7265,16 +7386,17 @@ in with self; { catseyes = derive2 { name="catseyes"; version="0.2.5"; sha256="11n2kxkqv4hqymkj6lkpcvhq6325q8f5w384xf8zb71jl8vx616l"; depends=[]; }; catsim = derive2 { name="catsim"; version="0.2.3"; sha256="1gz38xrzbray5ciiimkzdass8bhmiqxh6bcngjm5i8dvafk5gf9g"; depends=[Rcpp testthat]; }; cauchypca = derive2 { name="cauchypca"; version="1.2"; sha256="0zrxrbzdfkdjqa02ba7d3mjlfbq84464k8c5ja15xqgmgpvsd1x3"; depends=[doParallel foreach Rfast]; }; - cauphy = derive2 { name="cauphy"; version="1.0.1"; sha256="1bip2waavlk32waiz5q0f13wnzddhjj6ijhnkbk49nxvzi9m3a87"; depends=[ape doParallel foreach HDInterval nloptr phylolm pracma robustbase]; }; + cauphy = derive2 { name="cauphy"; version="1.0.2"; sha256="1jyw6pq17fzpkp6c68cbc7y5bs1y1xhnvd49j7kkypn7ziglpm9s"; depends=[ape doParallel foreach HDInterval nloptr phylolm pracma robustbase]; }; causact = derive2 { name="causact"; version="0.5.3"; sha256="1ax5nhrdkfcflqsif8r4dbyj0n68kd7yz7bfq8yk8z52vpkbh4is"; depends=[cowplot DiagrammeR dplyr forcats ggplot2 igraph lifecycle magrittr purrr reticulate rlang rstudioapi stringr tidyr]; }; causal_decomp = derive2 { name="causal.decomp"; version="0.1.0"; sha256="12iy64dnb91l47vai9qawlwvg17x5amqg0kdj8npk1mgzm2zfz4j"; depends=[CBPS MASS nnet PSweight spelling SuppDists]; }; causalCmprsk = derive2 { name="causalCmprsk"; version="2.0.0"; sha256="079wr4w30153hxvk2q9ki19h54p8vyvc1y6ka8j5vk6rcf8gmg5l"; depends=[data_table doParallel foreach inline purrr survival]; }; causalDisco = derive2 { name="causalDisco"; version="0.9.1"; sha256="1lni0y76prhvw60m0awwgmfadwlv1ciywlr85sr8ig2vaxf1smh9"; depends=[clipr gtools igraph pcalg RColorBrewer scales]; }; + causalOT = derive2 { name="causalOT"; version="1.0.1"; sha256="0mj3sisj4b2r7dlz7ckl4q91fzyd6qh75ijlavwb56hw8c09k8w0"; depends=[BH CBPS ggplot2 lbfgsb3c loo Matrix matrixStats osqp R6 Rcpp RcppEigen rlang sandwich torch]; }; causalPAF = derive2 { name="causalPAF"; version="1.2.5"; sha256="1hgixasanddxs9y1l45qmx5chhq0ri6npvzqwazjkk61byl2wj6c"; depends=[checkmate dagitty dplyr forestplot ggdag ggplot2 gridExtra magrittr MASS reshape2 rlist]; }; causaldata = derive2 { name="causaldata"; version="0.1.3"; sha256="1v5apihm9005j1kf3p1d28v6jaqx87ryc43kjhwd5mvvm10rmflc"; depends=[tibble]; }; causaldrf = derive2 { name="causaldrf"; version="0.4.2"; sha256="1dvgvzg7cyjzb8x3gxa7n6bnh34q7rps6f1xks1s0b3gjf53hvbp"; depends=[mgcv survey]; }; causaleffect = derive2 { name="causaleffect"; version="1.3.15"; sha256="1dyadjl941zback2jadsxi20a572gk1z7s6vrb432k2w65pdm2sv"; depends=[igraph]; }; - causaloptim = derive2 { name="causaloptim"; version="0.9.7"; sha256="1p6qmxlyr907w7iwqarghwzir0am7w4wk1c9i8sgzy02yqssmagj"; depends=[igraph rcdd Rcpp shiny]; }; + causaloptim = derive2 { name="causaloptim"; version="0.9.8"; sha256="0daghglhk4jngv242s1vdi8l1dwcp23gn47vacrs55in5mmpqraj"; depends=[igraph rcdd Rcpp shiny]; }; causalsens = derive2 { name="causalsens"; version="0.1.2"; sha256="1xy8nybflbw6hymc15mmz27ic6hcq89wryb8q6d4zi216lwv2nww"; depends=[]; }; causalweight = derive2 { name="causalweight"; version="1.0.4"; sha256="0pm5m9gmjzfbh9zspj2asaa7fwhflfhi9j48132lsd5h09n7iwma"; depends=[checkmate e1071 fastDummies glmnet grf hdm LARF mvtnorm np ranger SuperLearner xgboost]; }; caviarpd = derive2 { name="caviarpd"; version="0.3.9"; sha256="0dd1z7n06k578rz985hvpa9h8axik93fil1qysjx98faszxxnk2r"; depends=[]; }; @@ -7286,14 +7408,14 @@ in with self; { cbioportalR = derive2 { name="cbioportalR"; version="1.1.0"; sha256="0vr8sjp2fkz24zcws6i46kmswf30yj147y3108i6sk7ncc2mavr5"; depends=[cli dplyr glue httr jsonlite magrittr purrr rlang stringr tibble tidyr]; }; cbl = derive2 { name="cbl"; version="0.1.3"; sha256="1wgc9nsc875s2h583gigh9hyr9d15dp35rnmb1znwqy11jrswbw3"; depends=[data_table foreach glmnet lightgbm]; }; cbq = derive2 { name="cbq"; version="0.2.0.3"; sha256="12ix60mvs4rlh3376m6qcq5zslng1925hrsz5byddfdjx5wilyv7"; depends=[BH Formula Rcpp RcppEigen rstan rstantools StanHeaders]; }; - cbsodataR = derive2 { name="cbsodataR"; version="0.5.1"; sha256="02dalankaa4lfv9r7bc9cphmwb0mq6an7bs44rihipj8dsjd0v9y"; depends=[jsonlite whisker]; }; + cbsodataR = derive2 { name="cbsodataR"; version="1.0.1"; sha256="0p3bchkvib7jmr5qd3x36kcpajz6i2himk5s294z74hvc9vdkc7d"; depends=[jsonlite whisker]; }; ccRemover = derive2 { name="ccRemover"; version="1.0.4"; sha256="1npd0vx2hyg7qbwd650987i49v5cxr6i1hlj5rw6fxc0b808s596"; depends=[]; }; ccTensor = derive2 { name="ccTensor"; version="1.0.2"; sha256="1r1cqx5kn12xkczpw7f8ij16csnnfy3gjf3kcgr95f070lhd1qna"; depends=[fields igraph MASS rTensor]; }; ccaPP = derive2 { name="ccaPP"; version="0.3.3"; sha256="1p08gih67950khfkzhiksa8qw2f9mrmyqiiapsjpv6zc5g0lchhk"; depends=[pcaPP Rcpp RcppArmadillo robustbase]; }; cccd = derive2 { name="cccd"; version="1.6"; sha256="0cxh19jqappc6zq9nz3m40ybdmsp12mf7yvflsz96wks3ly2ld4y"; depends=[deldir FNN igraph proxy]; }; cccm = derive2 { name="cccm"; version="0.1.0"; sha256="1spwv5crmaysw19c2rq3cri2kmrfzqcb1wjdpri1ih6sgcg039gi"; depends=[dplyr rlang]; }; - cccp = derive2 { name="cccp"; version="0.2-9"; sha256="0nk1r2hvcizjclbd7b5wvmbm5334varaixl6hbbqg95g5kki86k2"; depends=[Rcpp RcppArmadillo]; }; - cccrm = derive2 { name="cccrm"; version="2.1.0"; sha256="0yi11jkh6a9zikm5xrzmsizv5l9qxck2rc0l3fcprnnz6prlbca1"; depends=[Deriv dplyr nlme tidyselect]; }; + cccp = derive2 { name="cccp"; version="0.3-1"; sha256="06ds1f954m2g3g85rccpvk1bhxqn544qqxg7wzs4jkb97h590dzn"; depends=[Rcpp RcppArmadillo]; }; + cccrm = derive2 { name="cccrm"; version="2.2.0"; sha256="099rpcxvz2hj9x361w7dnjvbl39hckr3b60am29jyqfv57qcikck"; depends=[Deriv dplyr nlme tidyselect]; }; ccda = derive2 { name="ccda"; version="1.1.1"; sha256="1kka4vmhpcnl4skdmijzsxrfj6dgax6hhlxvp7gkqlfaazq8pzf0"; depends=[MASS]; }; cchs = derive2 { name="cchs"; version="0.4.2"; sha256="18zk50g7rw8cb09fczpcdgzjl1b06rgf6lwy99sg7nq4scnzgzm8"; depends=[survival]; }; cchsflow = derive2 { name="cchsflow"; version="2.1.0"; sha256="1cnf1xcwz86nzzgk998m3icdvb799hnj7dzcmhv26gjvix1dqj2g"; depends=[dplyr haven magrittr sjlabelled stringr]; }; @@ -7317,10 +7439,10 @@ in with self; { cdcsis = derive2 { name="cdcsis"; version="2.0.3"; sha256="0hv52valyig3zzywm3058c5nxb2n7y3j2vfibxdbfg8414wwapd9"; depends=[ks mvtnorm Rcpp]; }; cder = derive2 { name="cder"; version="0.3-1"; sha256="0h44yifiy0fqrmfpri0had1ps5d1jj1dgwllha5ng04rjwlvxpzz"; depends=[curl dplyr glue lubridate readr stringr]; }; cdfquantreg = derive2 { name="cdfquantreg"; version="1.3.1-2"; sha256="1abbr14fqn56c4yqrz1qbzq03xl5qi6px29wljd3yzysypvh9his"; depends=[Formula MASS pracma]; }; - cdgd = derive2 { name="cdgd"; version="0.3.2"; sha256="04sx3yn4irmsadqripb4qdph6i2p4zy3gjjgvpmwny852li9h6cd"; depends=[caret]; }; + cdgd = derive2 { name="cdgd"; version="0.3.4"; sha256="1wyd3hmfgn9xkkrgl9iqqzybxmh0v7iyq2awi2w8ckz50glwd4sp"; depends=[caret]; }; cdlTools = derive2 { name="cdlTools"; version="0.15"; sha256="1p5d48v6nwlrgqqi0sg98zfhiycjcha6g12a7515xrvp6f5p28jn"; depends=[httr raster]; }; cdlei = derive2 { name="cdlei"; version="1.0"; sha256="1zsgryrwr1nqhcyizrh67lm953b87ih9l4rvc6i59s4vg2ph1ph1"; depends=[]; }; - cdmTools = derive2 { name="cdmTools"; version="1.0.3"; sha256="05h0kz939ig0dxizij07r0xbjm668sk0744ji9k16090xcgz25hh"; depends=[combinat doSNOW foreach GDINA ggplot2 GPArotation psych sirt]; }; + cdmTools = derive2 { name="cdmTools"; version="1.0.5"; sha256="0nd15lr8hdin8qnxykway70irvfi239rm4jx3ck253l7igswiz7s"; depends=[combinat doSNOW foreach fungible GDINA ggplot2 GPArotation psych sirt]; }; cdom = derive2 { name="cdom"; version="0.1.0"; sha256="00xqqqhskjlkz8ii7kqyabxk8995w7g9jiz1isyqjpwg8nsa3x28"; depends=[broom ggplot2 minpack_lm tidyr]; }; cdparcoord = derive2 { name="cdparcoord"; version="1.0.1"; sha256="0ym2ypw4bsvmx9q4vskrq4pdd92y47vs8pay8san40rgzwqr2agb"; depends=[data_table freqparcoord partools plotly]; }; cdrcR = derive2 { name="cdrcR"; version="0.1.1"; sha256="13fd936by6b47hlbwidv0jdqav6c4r2llgf3cajvivlpi98vk7c7"; depends=[dplyr httr jsonlite magrittr purrr rjson rlang rlist sf tidyr tidyselect]; }; @@ -7328,10 +7450,10 @@ in with self; { ceRtainty = derive2 { name="ceRtainty"; version="1.0.0"; sha256="01wgvjpxqwhgh6vx9vbmiv4d88bps790l6ij3gw5w69hbrrd9ixi"; depends=[dplyr RColorBrewer tidyr]; }; ceg = derive2 { name="ceg"; version="0.1.0"; sha256="01la7kv0a3inc9vy5x010ysicfiv404bqfgs8csvqixviap9rd74"; depends=[graph Rgraphviz]; }; celestial = derive2 { name="celestial"; version="1.4.6"; sha256="1gls0qvr8mxz79lsmk76v253f747g0cqys8p8wjmpijs8r0pyr4z"; depends=[NISTunits pracma RANN]; }; - cellKey = derive2 { name="cellKey"; version="1.0.1"; sha256="0dglb2a1hvbmld1pv6ysp80lql2hzvm76r748dxj93fj6i7lhmh8"; depends=[cli data_table digest ptable rlang sdcHierarchies sdcTable yaml]; }; + cellKey = derive2 { name="cellKey"; version="1.0.2"; sha256="1brl0747mr9wpk0q299d55z94zhq2783nad1lanm5ia39r0x8i22"; depends=[cli data_table digest ptable rlang sdcHierarchies sdcTable yaml]; }; cellOrigins = derive2 { name="cellOrigins"; version="0.1.3"; sha256="0nxhyz9bz0f598wpr10hm1d0zx83450xf9jkrl279v46x8sx36n4"; depends=[iterpc]; }; cellVolumeDist = derive2 { name="cellVolumeDist"; version="1.4"; sha256="1pbssq8zf1cmihs3fg5zgb3k876magxl84jld6vcfvvp76sxhr7l"; depends=[gplots minpack_lm]; }; - cellWise = derive2 { name="cellWise"; version="2.5.2"; sha256="1yi0l4fwsjvbqaka5dlk1vb88i243w83ywn5qr2xm26nipk7b5cf"; depends=[ggplot2 gridExtra matrixStats Rcpp RcppArmadillo reshape2 robustbase rrcov scales shape svd]; }; + cellWise = derive2 { name="cellWise"; version="2.5.3"; sha256="0asimy253lxm9yf47pynhxc7sfd3v5rkvnyf1sby7s4qkz06bh49"; depends=[ggplot2 gridExtra matrixStats Rcpp RcppArmadillo reshape2 robustbase rrcov scales shape svd]; }; cellpypes = derive2 { name="cellpypes"; version="0.1.3"; sha256="0wyf0p5x7dz8qy7xayp8n52cvk73fai13vzsknfk1qvs8wygnlfp"; depends=[cowplot dplyr ggplot2 Matrix rlang scales scattermore scUtils viridis]; }; cellranger = derive2 { name="cellranger"; version="1.1.0"; sha256="16fgi3annn34c3cxi0pxf62mmmmxi21hp0zzlv7bkfsjqy4g4f2x"; depends=[rematch tibble]; }; celltrackR = derive2 { name="celltrackR"; version="1.1.0"; sha256="08hbgpwcpf7v8l7qmszhjh0w4f4zjcizrdsxksihxpwdi9r4al3w"; depends=[ellipse pracma]; }; @@ -7368,10 +7490,11 @@ in with self; { cfda = derive2 { name="cfda"; version="0.11.0"; sha256="03w2vfgjf29qn40slqfpd54dmvzql53lc9j7n51ggg7bjchrg2x0"; depends=[diagram fda ggplot2 mgcv msm pbapply]; }; cfdecomp = derive2 { name="cfdecomp"; version="0.4.0"; sha256="0g61gpihk5kbbrqzn15fqjv3bawsq1vq3sdssbzs5j96afmf2aq8"; depends=[]; }; cffr = derive2 { name="cffr"; version="0.5.0"; sha256="0cx1fzhy190fbk4sk1a9c3rh2dli0b9r2q6h5wqm4dmv6ks4banx"; depends=[cli desc jsonlite jsonvalidate yaml]; }; - cfid = derive2 { name="cfid"; version="0.1.4"; sha256="1jd66vy71b5y4ng4k5ln08cm0pa1xrzd9in1l4d1qq4cnw5qa724"; depends=[]; }; + cfid = derive2 { name="cfid"; version="0.1.7"; sha256="03wfzilxgia12hacwkay2ki94mha8b42g62cx66x1rkqqxgcp6n9"; depends=[]; }; cfma = derive2 { name="cfma"; version="1.0"; sha256="006z5g3rqpg44jqdf6ivyxr47sxm5cd9cqhayfi8qk73xx5w4lv9"; depends=[]; }; cfmortality = derive2 { name="cfmortality"; version="0.3.0"; sha256="0dgwv89fzylznc6jr41ixzfs1gfs3np4gf46bk6pcd09l1kbx3lc"; depends=[]; }; cforward = derive2 { name="cforward"; version="0.1.0"; sha256="1vhac0669f20ckx7qi5v8rnbmscb87gw8rfn555xazdfbvri6m0w"; depends=[dplyr magrittr survival tibble]; }; + cfr = derive2 { name="cfr"; version="0.1.0"; sha256="1qy25jfzpsk4zfcgjlw188a40vvj478r4g7pwrwxw4ppcqrncxny"; depends=[checkmate]; }; cft = derive2 { name="cft"; version="1.0.0"; sha256="1jfp1dx15bs9c8c11ja80ga99m2d9q9j5sgdjkwvs23vjqdwi13a"; depends=[dplyr epitools furrr future magrittr osmdata pipeR plyr rlang rlist sf tidync tidyr]; }; cg = derive2 { name="cg"; version="1.0-3"; sha256="1kbyal1sicbr10yvxpwgcij710kqpi23vmndp9kyfzn3k8zfird3"; depends=[Hmisc lattice MASS multcomp nlme rms survival VGAM]; }; cgAUC = derive2 { name="cgAUC"; version="1.2.1"; sha256="172f9rkfhv4xzwpw8izsnsdbcw9p3hvxhh0fd8hzlkil7vskr3k8"; depends=[Rcpp]; }; @@ -7387,6 +7510,7 @@ in with self; { ch = derive2 { name="ch"; version="0.1.0.2"; sha256="1ryh2xr1ix4qznq1svi4gdr4qy6v6rg597z2zl6zw32s2xq6ssx6"; depends=[clipr crayon ggplot2 magrittr MASS polynom pracma Ryacas]; }; chameleon = derive2 { name="chameleon"; version="0.2-3"; sha256="0a3azp0zaakpqqx0pp94hkj3vgb2apnf8gb5ga0as4i8lrn9dz8i"; depends=[clue ggplot2 umap]; }; chandwich = derive2 { name="chandwich"; version="1.1.6"; sha256="03qcqw9xx8mw7hymjl3ym6l1adgw5ssv0pmcmdv2hk230mx2fsld"; depends=[numDeriv]; }; + changeRangeR = derive2 { name="changeRangeR"; version="1.1.0"; sha256="0y13wwz62wsh29flb7v094gb47gd6xwjq6fvmkzmlhz8x71f5g1v"; depends=[dplyr phylobase rangeModelMetadata raster sf sp]; }; changepoint = derive2 { name="changepoint"; version="2.2.4"; sha256="16v4p2c9zi2w3anwf5y9snl5dy1g5aidiqz1vn2p64qhfvg6yqxc"; depends=[zoo]; }; changepoint_geo = derive2 { name="changepoint.geo"; version="1.0.2"; sha256="0zwj4wwwh99diz0vn5f06ygs93afahnn5glvab2k7wgk2qyf5jgq"; depends=[changepoint changepoint_np ggplot2 Rdpack]; }; changepoint_influence = derive2 { name="changepoint.influence"; version="1.0.1"; sha256="03m7vyqy0qdvkrr0cgxc2g019rjkmsc0fwnzkp2gxbbhvwhs4qzd"; depends=[changepoint data_table ggplot2 gridExtra reshape]; }; @@ -7403,15 +7527,15 @@ in with self; { cheatsheet = derive2 { name="cheatsheet"; version="0.1.2"; sha256="0nhyz354hxnqbs3iwvaisssr4ciq6vary3ldkm8yanpdyw0p1k27"; depends=[cli crayon fs git2r magrittr purrr rstudioapi]; }; checkLuhn = derive2 { name="checkLuhn"; version="1.1.0"; sha256="1s1ix5n98bcbzcvrz5h19sk9pchdvrhpy3ppmw96ys8vylzm58mv"; depends=[dplyr stringr]; }; checkarg = derive2 { name="checkarg"; version="0.1.0"; sha256="0rkdjs2c4yx9laqgayxz57bwxhwgdh6ndrr4i3b1kh31lcmk1xc6"; depends=[]; }; - checkdown = derive2 { name="checkdown"; version="0.0.11"; sha256="1yg3718za5qzbya3yycwmz59w4g6a88nkhdxf7s60shh5isks8w9"; depends=[glue htmltools markdown]; }; + checkdown = derive2 { name="checkdown"; version="0.0.12"; sha256="0yn7casmsqcrc31b9g06sjdrwxjyw5cbg3pwwdn5s7gaal881rh1"; depends=[glue htmltools markdown]; }; checker = derive2 { name="checker"; version="0.1.3"; sha256="1n9gwgbkr2h6gna7nj18nv8bj2f9i2zyp407f4c4vj6f1pzj00ik"; depends=[cli rstudioapi yaml]; }; checkglobals = derive2 { name="checkglobals"; version="0.1.0"; sha256="1jcpga1bx8cx6fdf1ddjkfk7ap5dvm03g5xkni7as5bisggsp4jv"; depends=[]; }; checkhelper = derive2 { name="checkhelper"; version="0.1.0"; sha256="01sgw7cmdbjab7k501akh1ab5mr757mn2lbckc74yhrng1rxh6n1"; depends=[cli desc devtools dplyr glue lifecycle magrittr pkgbuild purrr rcmdcheck roxygen2 stringr whisker withr]; }; - checkmate = derive2 { name="checkmate"; version="2.2.0"; sha256="064i6l0n4w4jncpnk5wnj6sxak0jirdz757iirglcxg8ayq19v4n"; depends=[backports]; }; + checkmate = derive2 { name="checkmate"; version="2.3.1"; sha256="1xl4313kav3fy32ff9mdlm03za1mrwlym6d5abrkf0a0r86bmrp7"; depends=[backports]; }; checkpoint = derive2 { name="checkpoint"; version="1.0.2"; sha256="1987vn13b5j914vkzwbn7q1138b0xsjs55x5b2090kjk6kc900x8"; depends=[jsonlite pkgdepends withr yaml]; }; checkthat = derive2 { name="checkthat"; version="0.1.0"; sha256="1l88cn4q0475fizblypxjhrdrkqmc4a7ln3agz0cmsmp8z6j4gjd"; depends=[cli glue lifecycle purrr rlang]; }; cheddar = derive2 { name="cheddar"; version="0.1-638"; sha256="0y1kmm14f7fkxxyjvxiavzcy2bfflwp98yx7z98ib0v7dnn86vmx"; depends=[]; }; - cheem = derive2 { name="cheem"; version="0.3.0"; sha256="0l3arxxkg6rzkilklcmn61rl1j33yxcgbikj6mk5laqhhii3rqqp"; depends=[conflicted DT ggplot2 magrittr plotly shiny shinycssloaders shinythemes spinifex]; }; + cheem = derive2 { name="cheem"; version="0.4.0.0"; sha256="1b6gf2ax30rhpkmawvpar4cria4gkrcrzgyrvlrhcaialx40sjlz"; depends=[conflicted DT ggplot2 magrittr plotly shiny shinycssloaders shinythemes spinifex]; }; cheese = derive2 { name="cheese"; version="0.1.2"; sha256="0g935mlf2hkbhd8cif8nmvg477if8sv7ga50ddb0cvghdaqjd183"; depends=[dplyr forcats kableExtra knitr magrittr purrr rlang stringr tibble tidyr tidyselect]; }; chem_databases = derive2 { name="chem.databases"; version="1.0.0"; sha256="1xficpzs0v85irkp9hsfbng4jdvlmmynpjkqj93r1hw702vg325x"; depends=[]; }; chem16S = derive2 { name="chem16S"; version="1.0.0"; sha256="0a4r1sca2fsadaz3bmkrkylbdabwjw2ja6p9s9hgkgg4k6h3vslr"; depends=[ggplot2 phyloseq plyr reshape2 rlang]; }; @@ -7431,25 +7555,26 @@ in with self; { childesr = derive2 { name="childesr"; version="0.2.3"; sha256="1a58s0zph4mfmh9sdfbv7yaa20lx5gi0mca0ikzarfwxjl5knp39"; depends=[DBI dbplyr dplyr jsonlite magrittr purrr RMySQL]; }; childsds = derive2 { name="childsds"; version="0.8.0"; sha256="1vv02kbw17b8zva2yc1qgi750z9yhyfv5xbig29dhyzvj8k00yvb"; depends=[boot class dplyr gamlss gamlss_dist magrittr purrr purrrlyr reshape2 tibble tidyr VGAM]; }; chilemapas = derive2 { name="chilemapas"; version="0.3.0"; sha256="00v99y02fnxzn2ysbc2fbkdfirfl1276q8d7csi18kbym3vwqmq9"; depends=[dplyr magrittr rlang rmapshaper sf stringr]; }; - chillR = derive2 { name="chillR"; version="0.73.1"; sha256="1cbz13m4fa58amkkbfnysraz39fml3srhshiwbmhnnmv21nal86n"; depends=[assertthat dplyr fields GenSA ggplot2 httr jsonlite Kendall metR patchwork pls plyr progress R_utils raster Rcpp RCurl readxl reshape2 rlang RMAWGEN scales sp stringr tidyr XML]; }; + chillR = derive2 { name="chillR"; version="0.75"; sha256="0b8r8s7vqgpb6jjbqaf24yig2adagfl6rnnppx15mdhz8bmjc5aq"; depends=[assertthat dplyr ecmwfr fields GenSA ggplot2 httr jsonlite Kendall lubridate magrittr metR patchwork pls plyr progress purrr R_utils raster Rcpp RCurl readxl reshape2 rlang RMAWGEN scales stringr tidyr XML]; }; chinese_misc = derive2 { name="chinese.misc"; version="0.2.3"; sha256="0hlna52g00nh3908wgpb9ldgghff3gfjx24vmk5gikkazdqk9zrh"; depends=[jiebaR Matrix NLP purrr slam stringi tm]; }; chipPCR = derive2 { name="chipPCR"; version="1.0-2"; sha256="0q30ncnvbipvqbpxrx2yb68i2ybdfl1fbzj3f12dd2wmjjl72q1x"; depends=[lmtest MASS outliers ptw quantreg Rfit robustbase shiny signal]; }; chirps = derive2 { name="chirps"; version="0.1.4"; sha256="1yj91rvcsfsr2nmvk7qnxwfkbiblm4bdazs2p83g8ax4fwkrp39c"; depends=[httr jsonlite sf terra]; }; chisq_posthoc_test = derive2 { name="chisq.posthoc.test"; version="0.1.2"; sha256="0lvj3jqhaj1ijjpzvpq3fn3a1y3fgv69pxh91j6k958pn6vmp40i"; depends=[]; }; - chisquare = derive2 { name="chisquare"; version="0.6"; sha256="0jzn0xxmgswpfmyk25gx4cyf2xa4i68k78say1ni1qxm673rfl37"; depends=[gt]; }; + chisquare = derive2 { name="chisquare"; version="0.9"; sha256="11pypv6nmqqwrjvrzakn8x4ap0jw23dk3ij4i2kxx340j0gqk8qh"; depends=[gt]; }; chk = derive2 { name="chk"; version="0.9.1"; sha256="19q5ylkgrkdmnzg2df1lnrp2arbfzwfz4rbrr16j9ih2237kvd7r"; depends=[lifecycle rlang]; }; chkptstanr = derive2 { name="chkptstanr"; version="0.1.1"; sha256="0p0pzpzyg3sw4gnvzdx34f96yxidpykq49v5xlhnrsnpjzajjfs3"; depends=[abind brms Rdpack rstan]; }; chlorpromazineR = derive2 { name="chlorpromazineR"; version="0.2.0"; sha256="0w7v6xk3vyf9dyf9bh5v9516v78yhcdvy7h1140pg2yw8xmfyr0r"; depends=[]; }; - chngpt = derive2 { name="chngpt"; version="2023.1-30"; sha256="15n82vgqqbvxpdiq42zja352nlj39avwfzv4l0v98jnl8pjwbkzw"; depends=[boot kyotil lme4 MASS RhpcBLASctl survival]; }; + chngpt = derive2 { name="chngpt"; version="2023.11-29"; sha256="1zz0wgard6a1y36r78pfp5gqfjm12xlvh5cmdq3297m4d7jvrn34"; depends=[boot kyotil lme4 MASS RhpcBLASctl survival]; }; choiceDes = derive2 { name="choiceDes"; version="0.9-3"; sha256="1nsc8p4svfc6z7ckffl24c0acnaxi6cnpz7jq03vzn6spxvpjcmw"; depends=[AlgDesign]; }; cholera = derive2 { name="cholera"; version="0.8.0"; sha256="0qfy7xqkihn8jfxnhg0l5y0mii52lbfwmg663bqsjapylqc9bjcd"; depends=[deldir elevatr geosphere ggplot2 HistData igraph KernSmooth pracma RColorBrewer sp tanaka terra threejs TSP viridisLite]; }; + choosepc = derive2 { name="choosepc"; version="1.0"; sha256="0a8xvgpgaxxlb102ix5j98zd8wvi1xzs0cg7im8g2ly1h0mv1rxy"; depends=[Rfast2]; }; choplump = derive2 { name="choplump"; version="1.1.1"; sha256="14sssw57jfvff1s9h7pfgazg50xmblj0c2cljcmbdy19ynlkr43g"; depends=[]; }; chopthin = derive2 { name="chopthin"; version="0.2.2"; sha256="1ixmgq6igd2ji88qba7scny1j8rrizcf76dk4ymk3hah5dln97fz"; depends=[Rcpp]; }; chords = derive2 { name="chords"; version="0.95.4"; sha256="1v6zvl1mv9fyf6hx1fpbj3i7s893n4y1w4j9rw1arps006qz2jqn"; depends=[MASS Matrix]; }; choroplethr = derive2 { name="choroplethr"; version="3.7.2"; sha256="1ylwx78d4ypaciyp20wm3i7xvlf6p45yh5s9y32qf1z6n9ijnshi"; depends=[acs dplyr ggmap ggplot2 gridExtra Hmisc R6 RgoogleMaps rvest stringr tidycensus tidyr tigris WDI xml2]; }; choroplethrAdmin1 = derive2 { name="choroplethrAdmin1"; version="1.1.1"; sha256="13ljs21hdhiv6n4napmk1gjnjhpll6j5wyijzv4xnnbi1y3ns7a9"; depends=[ggplot2]; }; choroplethrMaps = derive2 { name="choroplethrMaps"; version="1.0.1"; sha256="0ghqb2d1h0qkbcsll6ck2qk5sfvdwsrlh3phlbsjbak30832j7fr"; depends=[]; }; - christmas = derive2 { name="christmas"; version="1.2.0"; sha256="0ir9fn1hdv6if263dlwam8m3gyiw59q7p26hdxav2dil8q8r4f2g"; depends=[animation]; }; + christmas = derive2 { name="christmas"; version="1.3.0"; sha256="0gqyxvhx8nvcrjxqrybvxyc3dgwvd3z9ln4fig6q3zamfpdmljb7"; depends=[animation]; }; chromConverter = derive2 { name="chromConverter"; version="0.2.1"; sha256="0mpakgcqmpw0s7vcndqfmd2n2imn35nh5nkps07aj0vgd7z9ib8w"; depends=[magrittr purrr readr readxl reticulate stringr tidyr xml2]; }; chromer = derive2 { name="chromer"; version="0.6"; sha256="1jn5dwl8i1di8hns3kjww6sqyba768j1302w3f43v9965vfr1xnp"; depends=[dplyr httr tibble]; }; chromoMap = derive2 { name="chromoMap"; version="4.1.1"; sha256="1067h5d6jdbm811n7ayikhqfbcqmxbz5jgp05vf1sbln7qgn9l43"; depends=[htmltools htmlwidgets]; }; @@ -7474,7 +7599,7 @@ in with self; { cimir = derive2 { name="cimir"; version="0.4-1"; sha256="0r8fmvqcihxsj0w1g2xm02wwqcgrwadbl5n1dzksw8zpcjfw7fkn"; depends=[curl dplyr glue jsonlite purrr rlang stringr tidyr]; }; cinaR = derive2 { name="cinaR"; version="0.2.3"; sha256="0kdf3xbhg7yhpr67fqbbwqm16fvv3dj9f7bvfqliy3xhpxpg23qi"; depends=[ChIPseeker DESeq2 dplyr edgeR fgsea GenomicRanges ggplot2 ggrepel limma pheatmap preprocessCore RColorBrewer sva TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene writexl]; }; cinaRgenesets = derive2 { name="cinaRgenesets"; version="0.1.1"; sha256="0pz3iw559d8rsxmnwd1cqcpv8qnnh9bfvc9ydzwznx8jczbldls8"; depends=[]; }; - cinterpolate = derive2 { name="cinterpolate"; version="1.0.0"; sha256="1aw6hs41xin2hhgmi4pr5510v4sn6x735lachpc5gpbxch5h3f82"; depends=[]; }; + cinterpolate = derive2 { name="cinterpolate"; version="1.0.1"; sha256="1viv904x4sbs8q2vz8a0aagamvs7n5i2xkscnxzz5csrdwr4mmai"; depends=[]; }; cipheR = derive2 { name="cipheR"; version="1.0.0"; sha256="01h8mh2xlz1kkwm3nbiw8lpjlkjc19x5x8dq1yxfwdkq5yjjkyaa"; depends=[]; }; cir = derive2 { name="cir"; version="2.3.1"; sha256="0bgza663rynx2b2p00phfz806cwf2m30yjkqzk2s23hbc47hx9qs"; depends=[]; }; circacompare = derive2 { name="circacompare"; version="0.1.1"; sha256="15vpnh20wni2wmp86xql9737kbxbi28s9a4pi3rihr1w5mcgqfaj"; depends=[ggplot2]; }; @@ -7493,6 +7618,7 @@ in with self; { citrus = derive2 { name="citrus"; version="1.0.2"; sha256="1pzzyppqfh3qvc1xi2947lnshv7z2c21r8fribhc1avj76j26q5y"; depends=[clustMixType dplyr GGally ggplot2 RColorBrewer rlang rpart rpart_plot stringr tibble treeClust]; }; ciu = derive2 { name="ciu"; version="0.6.0"; sha256="0pqs8ivbybbrjar978bl05awgaks33nqfm7l9z68iv2sj4a9hv21"; depends=[crayon ggplot2 Rcpp]; }; ciuupi2 = derive2 { name="ciuupi2"; version="1.0.1"; sha256="04x02qmqqyrc4h4z4mpl4zn5vr9y28k6j6n30fbr9q238zd543db"; depends=[functional nloptr pracma PreciseSums statmod]; }; + civ = derive2 { name="civ"; version="0.1.0"; sha256="12k8wqv33p3pvvcg5sr8bvgxgnmsyp6nfpnz00x3y43wax35s7h0"; depends=[AER kcmeans]; }; civis = derive2 { name="civis"; version="3.1.2"; sha256="0ahrav9gd0dy05vxapg5x0csadwcnm4nfcwwk752j9nksd1hl3wg"; depends=[future httr jsonlite memoise]; }; cjar = derive2 { name="cjar"; version="0.1.2"; sha256="0rq9ryhp2h3p927227chzwbjn7x22h9ckkha2kclhx0jh7swf5y7"; depends=[assertthat dplyr glue httr jose jsonlite lubridate magrittr memoise openssl progress purrr R6 rlang stringr tibble tidyr vctrs]; }; cjbart = derive2 { name="cjbart"; version="0.3.2"; sha256="1d6jg6m86i2vx1yq66flj22x061s2x8rxsasqnn688kaaqrya657"; depends=[BART ggplot2 randomForestSRC Rdpack rlang tidyr]; }; @@ -7515,7 +7641,7 @@ in with self; { clda = derive2 { name="clda"; version="0.1"; sha256="03zfanvpz1h42h2z38a63fck1p5hqig4w2svknzpw7mryji5q9b1"; depends=[MASS]; }; cleaR = derive2 { name="cleaR"; version="0.0.4"; sha256="1vvmaaqqrd65l9hm3yjf88ajmlaf1sl7iy816ypjy9ww9x7dcyf4"; depends=[]; }; clean = derive2 { name="clean"; version="2.0.0"; sha256="0zvk3a5yz54g2mn7y1d91z6ljglbyq1hkh4iip1dfyi15chrqv7y"; depends=[cleaner]; }; - cleanNLP = derive2 { name="cleanNLP"; version="3.0.4"; sha256="13qsvcgw6lyxinmb4ky5qxxbql4mzsgsylkzbyg0pljq29yv9j0x"; depends=[Matrix reticulate stringi udpipe]; }; + cleanNLP = derive2 { name="cleanNLP"; version="3.0.7"; sha256="0zkfc7m7afmljr5rflx9mfplfamv6c30qaw0ckalj14s9xdrxa44"; depends=[Matrix reticulate stringi udpipe]; }; cleanTS = derive2 { name="cleanTS"; version="0.1.2"; sha256="04k84989a0jvdd015yrd6wqnfk19yq0a4qpdnm3l0137h7s2xq8k"; depends=[data_table gganimate ggplot2 ggtext glue imputeTestbench imputeTS lubridate shiny stringr tibble transformr]; }; cleancall = derive2 { name="cleancall"; version="0.1.3"; sha256="079l5knm3lrvnfbwcvg2g62sqbg7iira5x0gxd4fk1pysnm5hwmf"; depends=[]; }; cleandata = derive2 { name="cleandata"; version="0.3.0"; sha256="1lm7k25j16p888xvd7rzzd3sb3namzjlpjn22xmmpzlzyl0h7dhk"; depends=[]; }; @@ -7526,7 +7652,7 @@ in with self; { clespr = derive2 { name="clespr"; version="1.1.2"; sha256="1993kd70w48a110im47vcpll0c6nfrm7m33r6l8rzgwnpsmcls8g"; depends=[AER clordr doParallel foreach magic MASS pbivnorm survival]; }; clevr = derive2 { name="clevr"; version="0.1.2"; sha256="0r47mq0k55v3jvkzv1nlajqmcj03gq0igrxlcwhfrhbam9vwvapx"; depends=[BH Matrix Rcpp]; }; clhs = derive2 { name="clhs"; version="0.9.0"; sha256="04hd0p51j15294fv1a9qx61p5yfmh8hcx784v3x1s0kx7km34saz"; depends=[cluster ggplot2 plyr raster Rcpp RcppArmadillo reshape2 sf sp]; }; - cli = derive2 { name="cli"; version="3.6.1"; sha256="0djyl08k7nhlbzgnfx7gq8w00s7c9f66bd11bvi9lzz6qz70cc5y"; depends=[]; }; + cli = derive2 { name="cli"; version="3.6.2"; sha256="0lg131q9l8wpnggc3jlrjl1ri3dw0d1pi4nr1zlnlaqvf7ilj1sc"; depends=[]; }; cliapp = derive2 { name="cliapp"; version="0.1.1"; sha256="0v62lbcsja0xmlpqcps370n5c7bk4j2n8pwh9xyif5s4wpf82qz1"; depends=[cli crayon fansi glue prettycode progress R6 selectr withr xml2]; }; clickR = derive2 { name="clickR"; version="0.9.39"; sha256="0kqv3kwj1dbq6d7010gdy003v11ww0bx2zr7yv93ag060viv956d"; depends=[beeswarm future future_apply stringdist]; }; clickb = derive2 { name="clickb"; version="0.1"; sha256="0cbhwvxb7xa34wf10saq65wiwlmw1cgnbiqgv6mfyd8dcdv25rwg"; depends=[DiscreteWeibull mclust MCMCpack]; }; @@ -7542,19 +7668,20 @@ in with self; { climatol = derive2 { name="climatol"; version="4.0.0"; sha256="0hz5j9wg3c2bd2v4q0mv01v7wwd6v650fbcvrl4zqxd9w55kmggs"; depends=[]; }; climatrends = derive2 { name="climatrends"; version="0.5"; sha256="0b2afsff0yl2rcvff5mi6zz5xls9k9hzpay041mv11wc7ii8bw27"; depends=[nasapower]; }; clime = derive2 { name="clime"; version="0.5.0"; sha256="15xc4cvllf6qpwa8a0lvsbivx4cricbgn0v3wc70xy69ngfa7zaj"; depends=[lpSolve]; }; + climenv = derive2 { name="climenv"; version="1.0.0"; sha256="0w1pz725b6sw854pinypgi57vb2xjis3xx53b4mggwpdghck6mk7"; depends=[climaemet dismo dplyr elevatr exactextractr geodata glue plyr randomForest sf sp Ternary terra]; }; climetrics = derive2 { name="climetrics"; version="1.0-12"; sha256="0mvs1k0fld1rrqnvjjdnhz9m1dgp8j636ij8wwnb12pz8fp6gvg1"; depends=[raster rts terra xts yaImpute zoo]; }; - climextRemes = derive2 { name="climextRemes"; version="0.3.0"; sha256="0c3zh64pipdq5266g8p6c6h0qdwfmigfh6s63ljqvr1ysv32k57g"; depends=[boot extRemes]; }; + climextRemes = derive2 { name="climextRemes"; version="0.3.1"; sha256="0dvkwdb37aqvl9qanaw4b7in6b4vjih3xjy0j16qdr5w76jcn804"; depends=[boot extRemes]; }; climwin = derive2 { name="climwin"; version="1.2.3"; sha256="1r2x5941k8l9z3517389y120sfhrskdpchc0pkibznza8aa95r85"; depends=[evd ggplot2 gridExtra lme4 lubridate Matrix MuMIn nlme numDeriv RcppRoll reshape]; }; clinDR = derive2 { name="clinDR"; version="2.4.1"; sha256="06q8ajfa0gj8ddr6vb456vra4id7la50aidx3j2bnyaysbavd108"; depends=[doParallel DoseFinding dplyr foreach ggplot2 glue mvtnorm purrr rstan shiny tibble tidyr waiter]; }; - clinDataReview = derive2 { name="clinDataReview"; version="1.4.0"; sha256="0b74ygvwv3ss76y15l9lqg8lwq8vxkdari34i0b6fl12a26ndlh6"; depends=[bookdown clinUtils crosstalk data_table ggplot2 haven htmltools htmlwidgets jsonlite jsonvalidate knitr plotly plyr rmarkdown stringr xfun xml2 yaml]; }; + clinDataReview = derive2 { name="clinDataReview"; version="1.5.0"; sha256="17ffdz410fniiybzw8rka0rgv8jqqsmsmp3b9yzlpsjcpx0z55s9"; depends=[bookdown clinUtils crosstalk data_table ggplot2 haven htmltools htmlwidgets jsonlite jsonvalidate knitr plotly plyr rmarkdown stringr xfun xml2 yaml]; }; clinPK = derive2 { name="clinPK"; version="0.11.1"; sha256="1mzws5pgczdghxl2h0zgrp44in80kplnhy3gc7g4g8wssjwywbb3"; depends=[]; }; clinUtils = derive2 { name="clinUtils"; version="0.1.4"; sha256="0iiw7786i9a878rx0ld9q7rk9szx46hdl9rg2p3032l8ksvryqm2"; depends=[crosstalk data_table DT haven htmlwidgets knitr plyr viridisLite]; }; clinfun = derive2 { name="clinfun"; version="1.1.5"; sha256="0dsbgj29s7c9pv6p2j3nvksnckym0gyb8hwqvks53mvy2pg9j1ni"; depends=[mvtnorm]; }; - clinicalsignificance = derive2 { name="clinicalsignificance"; version="1.2.0"; sha256="017myylm3hh256zqis80f3y7y44p706wzkf8klw4d0frai7mrfwv"; depends=[checkmate crayon dplyr ggplot2 insight lme4 magrittr purrr rlang tibble tidyr]; }; + clinicalsignificance = derive2 { name="clinicalsignificance"; version="2.0.0"; sha256="132zwgzrc9gf10x2ldr7mjbj8k83h87y7py9b34yv9s7jmciy62x"; depends=[BayesFactor bayestestR cli dplyr ggplot2 insight lme4 purrr rlang tibble tidyr]; }; clinmon = derive2 { name="clinmon"; version="0.6.0"; sha256="0cd5mrirfll0zbm9k8glwdqnh4qy4dlfnsypr3xhyf6ppgm35hlv"; depends=[signal]; }; clinsig = derive2 { name="clinsig"; version="1.2"; sha256="1wgfl9kks57yizrf8z6x7dhmbl3a80q8nnj3a5n2hpc9yr8l9ijf"; depends=[]; }; clinspacy = derive2 { name="clinspacy"; version="1.0.2"; sha256="134nvkircy1a1rmsg2nszk2r8bcdmikmrx6plchdz8gxyjd6jmya"; depends=[assertthat data_table magrittr rappdirs reticulate]; }; - clintools = derive2 { name="clintools"; version="0.9.9"; sha256="0yay9s8490zmn2fjv3gqh58qmk8cci50phvz0cgab52kslhf0rvq"; depends=[ggplot2 irr lme4 nlme parameters pROC scales signal stringi xml2]; }; + clintools = derive2 { name="clintools"; version="0.9.10.1"; sha256="0f8y1l3mqij6y87xf07gq7r2frigswcff5p3v119l6rldmkhp4fl"; depends=[dplyr ggplot2 irr lme4 nlme pander parameters pROC scales signal stringi survival xml2]; }; clipp = derive2 { name="clipp"; version="1.1.1"; sha256="1yddihmjg90j9id825lyanqpfm4i67mdgvdm53pz20p8fcq4mlzw"; depends=[]; }; clipr = derive2 { name="clipr"; version="0.8.0"; sha256="1s9vvv3cxnz8w11gsi8z9ddv9jzib5qf5qqxnwqrrv7vj8cr7hij"; depends=[]; }; clisymbols = derive2 { name="clisymbols"; version="1.2.0"; sha256="1q7gi2zmykhzas9v8fdnbpdq7pzdcpbhim1yxvd2062l777g4j86"; depends=[]; }; @@ -7578,7 +7705,7 @@ in with self; { clubSandwich = derive2 { name="clubSandwich"; version="0.5.10"; sha256="0qx4qq0k01q06hrs348n417pf338dyfbcy2vsi0y3ap6y1rb7w6s"; depends=[sandwich]; }; clubpro = derive2 { name="clubpro"; version="0.5.5"; sha256="1iady5hvjkiiwbjpyyv0m8pc5jbyb0ra7vsywfbl4vhvw4v4sxvz"; depends=[lattice Rcpp RcppArmadillo]; }; clue = derive2 { name="clue"; version="0.3-65"; sha256="1y1ycb5yw034ccxz15x41ah699hgjffsfvbn15fwdcdjbz9zvy5x"; depends=[cluster]; }; - clugenr = derive2 { name="clugenr"; version="1.0.1"; sha256="0bm6wblfcgw9c17g47pz5lhm456kss3dcr43qhwkvradyw7hfs7r"; depends=[mathjaxr]; }; + clugenr = derive2 { name="clugenr"; version="1.0.2"; sha256="1xjznvd89cfr43ccnsrwnwv20qghsmrj4ag6l4dksm8212drd628"; depends=[mathjaxr]; }; clusTransition = derive2 { name="clusTransition"; version="1.0"; sha256="0q5cxkb5mrygyp2zg177rwn5cgpnyqln7yjvjflb48ll3jr98342"; depends=[flexclust]; }; cluscov = derive2 { name="cluscov"; version="1.1.0"; sha256="0345v5r6b53243h5bir29v0w77pmwjqjkqfrjnk5j5r1wbh98q1w"; depends=[MASS quantreg]; }; clusrank = derive2 { name="clusrank"; version="1.0-3"; sha256="0m5yggbmp3kjh98nkmwy4k8lnd2jxp4c5gyysgvpp5zypakjc1cc"; depends=[MASS Rcpp]; }; @@ -7587,11 +7714,12 @@ in with self; { clustDRM = derive2 { name="clustDRM"; version="0.1-0"; sha256="1c5z08a15scp3nrwyh0c03pdaawvm3ivbygqpbglwxim7zf73rd2"; depends=[caret doParallel DoseFinding DT foreach IsoGene MCPMod multcomp ORCME ORIClust pheatmap RColorBrewer readr shiny]; }; clustEff = derive2 { name="clustEff"; version="0.3.0"; sha256="1j8v0qm6mqbh08kq8jahpgg6ygab6ac22lzzpcc2h72zm7r7cacr"; depends=[cluster fda ggplot2 ggpubr qrcm]; }; clustMD = derive2 { name="clustMD"; version="1.2.1"; sha256="0w4s9dab2mm5x0xibyl6s101c64if945a2cmwin9psd95p76mcny"; depends=[ggplot2 MASS mclust msm mvtnorm reshape2 truncnorm viridis]; }; - clustMixType = derive2 { name="clustMixType"; version="0.3-9"; sha256="0ijinldyb55chs2llklzk8c7pxxhhfy5cc6ar4fd1gbaasgkadx2"; depends=[RColorBrewer tibble]; }; + clustMixType = derive2 { name="clustMixType"; version="0.3-14"; sha256="0i3wlnwa075rlwgv5b2kzgnswv6r7hha7biq84jqsa61hhysjxxw"; depends=[combinat dplyr RColorBrewer rlang tibble]; }; clustNet = derive2 { name="clustNet"; version="1.1.0"; sha256="1pr2wmlwhgdw4dvgbcx977aaagpp1j5lw5v49dxq4nv2k5vw2f1p"; depends=[BiDAG clue graph igraph pcalg RBGL]; }; - cluster = derive2 { name="cluster"; version="2.1.4"; sha256="1dpmss4mdpw6la5kjf135h2jj5j5zmqvykpj6fl6n5wslbn0rwf6"; depends=[]; }; + cluster = derive2 { name="cluster"; version="2.1.6"; sha256="0r1i243mjbsx00ccg3f46c5iwnfmjxmhhdjvrj3m799mzpx0xifi"; depends=[]; }; cluster_datasets = derive2 { name="cluster.datasets"; version="1.0-1"; sha256="0i68s9305q08fhynpq24qnlw03gg4hbk4184z3q3ycbi8njpr4il"; depends=[]; }; clusterCons = derive2 { name="clusterCons"; version="1.2"; sha256="1k1y6cqpb5fyi2mbx2i4jbiwz0fni44lnq0xnv3pl0x3dpscwh6q"; depends=[apcluster cluster lattice RColorBrewer]; }; + clusterCrit = derive2 { name="clusterCrit"; version="1.3.0"; sha256="0raxlyvr3kr8c8bzjgs7hb9n76m314vzvfiz7c74v6cqpkmh6dkx"; depends=[]; }; clusterGeneration = derive2 { name="clusterGeneration"; version="1.3.8"; sha256="0w1sywv9cgl78wrsamh1zrig67r3grnyl27f036ipd1ab1b2510g"; depends=[MASS]; }; clusterHD = derive2 { name="clusterHD"; version="1.0.2"; sha256="16mk0bgvahxpjfawxkpjlfh9j1n5dldl6lhi7d1ssf5zaha35jkm"; depends=[Ckmeans_1d_dp cluster mclust Rcpp RcppArmadillo]; }; clusterRepro = derive2 { name="clusterRepro"; version="0.9"; sha256="0s7qqvaf5yxxwhw6qyzfmk65c49yz405gljarwav6aglkx9883cl"; depends=[]; }; @@ -7601,14 +7729,14 @@ in with self; { clusteredinterference = derive2 { name="clusteredinterference"; version="1.0.1"; sha256="01w7i9pmvwmrlf5q6y2d48ib0bm16j16xiw4pqnrvbndx4d6wf6n"; depends=[cubature Formula lme4 numDeriv rootSolve]; }; clusterhap = derive2 { name="clusterhap"; version="0.1"; sha256="1ic6588mqp146jsvrxlxk449zw4n81xixgrny9r29497z7hg5a1m"; depends=[]; }; clustering_sc_dp = derive2 { name="clustering.sc.dp"; version="1.1"; sha256="0l5grxvjxzc89qn0nvd79ljzjp89vgxinms291hxzvgbid6yn5sc"; depends=[]; }; - clustermole = derive2 { name="clustermole"; version="1.1.0"; sha256="15v3fspp82z7vh5f1ym89mrmajl8b7qymwr1fqa6kfi982dzhrar"; depends=[dplyr GSEABase GSVA magrittr rlang singscore tibble tidyr]; }; - clustermq = derive2 { name="clustermq"; version="0.9.0"; sha256="0xajyycwc3029yrg5yrvff9lp8rhw3sgjf6rv1alp6wv8gd8gqy1"; depends=[narray progress R6 Rcpp]; }; + clustermole = derive2 { name="clustermole"; version="1.1.1"; sha256="1wfnv93b5rrdpad64gc3sv919yis92xa03ja29lsvcmkiqpbjsq9"; depends=[dplyr GSEABase GSVA magrittr rlang singscore tibble tidyr]; }; + clustermq = derive2 { name="clustermq"; version="0.9.3"; sha256="0j0m6gx49w89w63xh0qb002z5lwc0118mz96fs3xvcqb2qbv7npv"; depends=[globals narray progress R6 Rcpp]; }; clusternomics = derive2 { name="clusternomics"; version="0.1.1"; sha256="05nkw6h2dvky07fj50myzw5xlkqyiflbn4vwqw8a1q2idv4awi7b"; depends=[magrittr MASS plyr]; }; clustertend = derive2 { name="clustertend"; version="1.7"; sha256="0zhpx8lg7cxywin9j5kglj2had20wy3mwwgjygv2gjibj7a6i3cl"; depends=[]; }; clustlearn = derive2 { name="clustlearn"; version="1.0.0"; sha256="11f82p777n5qwiqig2anyi6dxpb75kkgslkq7ii3v9h111jk303m"; depends=[cli proxy]; }; clustra = derive2 { name="clustra"; version="0.2.0"; sha256="1lgqy791l9bx7bx9jydpfsjych7yyw2sblw1qnspgmw0qs1pw5js"; depends=[data_table mgcv MixSim]; }; clustrd = derive2 { name="clustrd"; version="1.4.0"; sha256="1pgl5yb37nsm0b1iniy7hadcxcbhlp5xwg77av74f568qp1pgx2c"; depends=[ca cluster corpcor dplyr fpc GGally ggplot2 ggrepel plyr rARPACK tibble]; }; - clustree = derive2 { name="clustree"; version="0.5.0"; sha256="1haam13aifak8fladyxwa0gz56anj1zfczfjgs07gbw90kf6azx8"; depends=[checkmate dplyr ggplot2 ggraph ggrepel igraph rlang tidygraph viridis]; }; + clustree = derive2 { name="clustree"; version="0.5.1"; sha256="05yizn8hcf4nsibypxahp2mz64sy10vli776mi0d2gvfb5p4kwmm"; depends=[checkmate dplyr ggplot2 ggraph ggrepel igraph rlang tidygraph viridis]; }; clustringr = derive2 { name="clustringr"; version="1.0"; sha256="07f0ywpkf8igic7ijvvrjlngq3smjcv9nqnah41fp6wfgvh49ifq"; depends=[assertthat dplyr forcats ggplot2 ggraph igraph magrittr rlang stringdist stringi stringr tidygraph]; }; clustvarsel = derive2 { name="clustvarsel"; version="2.3.4"; sha256="0hzvfcjs1k13j695jx6m0fgmcxy284gp4d59b7zmnvqib153x89x"; depends=[BMA foreach iterators Matrix mclust]; }; clv = derive2 { name="clv"; version="0.3-2.4"; sha256="1zbi4i6z0sphkkjifr2h0pms9ysifh62iwcpmh9kmv2wl5m51vms"; depends=[class cluster]; }; @@ -7621,8 +7749,8 @@ in with self; { cmce = derive2 { name="cmce"; version="0.1.0"; sha256="0d52ci906zbd4q43qylcyw93acxh7f20jn3r0k74ynyy47131dnd"; depends=[]; }; cmdfun = derive2 { name="cmdfun"; version="1.0.2"; sha256="1pbcq7hi2lcmqnghmy3q2fsk0c9fy5m0637acyzmc096fxbx723j"; depends=[magrittr purrr R_utils rlang testthat usethis]; }; cmenet = derive2 { name="cmenet"; version="0.1.2"; sha256="0v3fassl21wdyx7s4shsib936fr41qr9hxjgcjc2f8az0ljd1p70"; depends=[glmnet hierNet MASS Rcpp RcppArmadillo sparsenet]; }; - cmfrec = derive2 { name="cmfrec"; version="3.5.1-1"; sha256="0k3axbc0p5c0rxggp00vv1h5ylnfp57xbb5j3ndgqz0wig2l424z"; depends=[]; }; - cmhc = derive2 { name="cmhc"; version="0.2.6"; sha256="0cm2p3hvingygpxh67q8xjg2c2iy8ddz3hkb3jc4yyijjhxhkima"; depends=[aws_s3 digest dplyr httr readr rlang stringr tibble]; }; + cmfrec = derive2 { name="cmfrec"; version="3.5.1-3"; sha256="0hlz10zrwdk9p0rybfqn04104bv0d9024d0ca1d6v66ymzy3gwlw"; depends=[]; }; + cmhc = derive2 { name="cmhc"; version="0.2.7"; sha256="1iy7qslr1an5q1dpdx02p9734ghnmwql1cf5jcnl2a8cjhcgyxxn"; depends=[aws_s3 digest dplyr httr readr rlang stringr tibble]; }; cml = derive2 { name="cml"; version="0.2.2"; sha256="1k1fj3j6kxpnxzykqbrcv09q8xhp749apfir0hzkp1f2apyjxymi"; depends=[vegan]; }; cmm = derive2 { name="cmm"; version="1.0"; sha256="1aardzrryg6hs5x01absvnj62qys7qjmnzrbsjh1dqvr4jgvs8ka"; depends=[]; }; cmmr = derive2 { name="cmmr"; version="0.1.2"; sha256="0nik1pzd1rckalvn7xh6s699kkdjnra3q3bn5x16c1lmpz5bp2s4"; depends=[httr progress RJSONIO]; }; @@ -7636,11 +7764,11 @@ in with self; { cms = derive2 { name="cms"; version="0.1.0"; sha256="0m3cxvw40nyr1jpdkhg5nbms16hkzj0mrx5nl39x1l42cx2hcjrl"; depends=[assertthat dplyr magrittr readr rlang rvest xml2]; }; cmsaf = derive2 { name="cmsaf"; version="3.5.0"; sha256="0a7ld5651ad3073hp2pyisbygxnd5lak11rinzgqrb5szlzih89q"; depends=[cmsafops cmsafvis colorspace colourpicker data_table FNN maps ncdf4 R_utils raster SearchTrees shiny shinyFiles shinyjs shinythemes shinyWidgets xml2]; }; cmsafops = derive2 { name="cmsafops"; version="1.3.0"; sha256="0lyjyd78d0qprx8vjxpny2jl14cgy2xy47ydsv5awgg7bb4w34pg"; depends=[assertthat fields FNN ncdf4 progress rainfarmr raster SearchTrees trend]; }; - cmsafvis = derive2 { name="cmsafvis"; version="1.2.0"; sha256="1rx8g8ssprlspfkbb5x3hrahkl90mi58camqgicd39gy12dk0d7i"; depends=[assertthat cmsafops colorspace countrycode fields gridExtra mapproj maps ncdf4 png progress raster rasterVis RColorBrewer sf terra]; }; + cmsafvis = derive2 { name="cmsafvis"; version="1.2.2"; sha256="1p2sbm7k5d7yj0hphhq0f3s567wkf0p95qqabzl3dc7f9skm4rjv"; depends=[assertthat cmsafops colorspace countrycode fields gridExtra mapproj maps ncdf4 png progress raster rasterVis RColorBrewer sf terra]; }; cmstatr = derive2 { name="cmstatr"; version="0.9.2"; sha256="08bpyr8zc3mn8rwzd3g6wl16dh4pyxnsjichcd1vd6yvail7ykii"; depends=[dplyr generics ggplot2 kSamples MASS purrr rlang tibble]; }; cmtest = derive2 { name="cmtest"; version="0.1-2"; sha256="1qff6vx0c9sw4xm7fwhck165snrahlmi91na64f7axad14qmp34d"; depends=[Rdpack]; }; cmvnorm = derive2 { name="cmvnorm"; version="1.0-7"; sha256="0zi4adh3gd8nbcnsn9fqiiqi5pc2jx782vw394gi988vyngqr7cq"; depends=[elliptic emulator]; }; - cna = derive2 { name="cna"; version="3.5.4"; sha256="1hx1jwdhhmx4f18vkhsjzzxkzqz5anyn6pq774q3yn2ca0vzshb5"; depends=[car Matrix matrixStats Rcpp]; }; + cna = derive2 { name="cna"; version="3.5.6"; sha256="1368152mlj2kv3py45bggm5dpi6hhi9rx5db7rfim6wy88qgqxz4"; depends=[car Matrix matrixStats Rcpp]; }; cnaOpt = derive2 { name="cnaOpt"; version="0.5.2"; sha256="1ciqh0d88270hizlsks7d05kggaszzl6add2n143z7cswkgfvkyr"; depends=[cna dplyr ggplot2 matrixStats Rcpp]; }; cnbdistr = derive2 { name="cnbdistr"; version="1.0.1"; sha256="05qi41jimslbngjgbwzfda0q25hb28ax79v9yckvrbpgjc8dk990"; depends=[hypergeo]; }; cncaGUI = derive2 { name="cncaGUI"; version="1.1"; sha256="0wmapwfag2grshmdrpmlinzikrsprcc8a1afq4dfkwr54rb3m6ky"; depends=[MASS plotrix rgl shapes tcltk2 tkrplot]; }; @@ -7651,7 +7779,7 @@ in with self; { coalitions = derive2 { name="coalitions"; version="0.6.24"; sha256="1ya9g2i1ds2w4hxbacmql67a3hh1grycj74g6b7xb05h478ym87n"; depends=[checkmate dplyr ggplot2 gtools jsonlite lubridate magrittr purrr RCurl rlang rvest stringr tibble tidyr xml2]; }; coarseDataTools = derive2 { name="coarseDataTools"; version="0.6-6"; sha256="1g9hxyp2vdhq1zr18qlf2aqwp9d9hr07k6grmvblj2xrwlzfvc1p"; depends=[MCMCpack]; }; coat = derive2 { name="coat"; version="0.2.0"; sha256="01sfssvb20rnjx6vpgyglj96wysr9v00n7fa8mg9l65cgv32dvgc"; depends=[ggparty ggplot2 ggtext gridExtra partykit]; }; - cobalt = derive2 { name="cobalt"; version="4.5.1"; sha256="1h175i01xii07hzqrz6qkqvv0w2n64m8d158ql02ka9ka206i6vr"; depends=[backports chk crayon ggplot2 gridExtra gtable rlang]; }; + cobalt = derive2 { name="cobalt"; version="4.5.2"; sha256="1jbff5ran26kc4w7k6b3bcqvj4g4zlda60qn06gxbv1pv09j2npi"; depends=[backports chk crayon ggplot2 gridExtra gtable rlang]; }; cobiclust = derive2 { name="cobiclust"; version="0.1.0"; sha256="068cqrhx7lxsvcjb62rgrca7y20cybz4445bl1qc6k16ca4bh0m9"; depends=[cluster]; }; cobs = derive2 { name="cobs"; version="1.3-5"; sha256="04f6a6gp11p93j2k35mbrfqgjx5qsgi3dj1085a5v5s0z6l7vbkz"; depends=[quantreg SparseM]; }; coca = derive2 { name="coca"; version="1.1.0"; sha256="1lh7q3ip1jaz5zj5zcnd5whwpjw6zcrxs6j0j8mnmjsnw2kr4m5n"; depends=[caret cluster fpc glmnet Matrix nnet pheatmap RColorBrewer sparcl]; }; @@ -7662,8 +7790,8 @@ in with self; { cocosoR = derive2 { name="cocosoR"; version="0.1.0"; sha256="0aywv3r1kcqiy3bnmvl6djhngzhyvg1f62fldwpz9plxmhphiwdp"; depends=[]; }; cocron = derive2 { name="cocron"; version="1.0-1"; sha256="0dl14y9v9kndy5gzhhbhq3f31ja724y1hra40givy6bij7h2cj30"; depends=[]; }; coda = derive2 { name="coda"; version="0.19-4"; sha256="13z5dwfpnyyhpsbpg4xr9g5c1685jhqj90f4x4qkcykr6kykqba2"; depends=[lattice]; }; - coda_base = derive2 { name="coda.base"; version="0.5.4.3"; sha256="0makfk7lzx7sbqs553zh2gv5zkhdqjcx96hryj6pmld0y2fkyzdn"; depends=[jsonlite Matrix Rcpp RcppArmadillo]; }; - coda4microbiome = derive2 { name="coda4microbiome"; version="0.1.4"; sha256="1z8bdhnslw13rmdw1jnj5ldr6jmn8grmzn5mhsy96r8x9xyzk5b5"; depends=[corrplot ggplot2 ggpubr glmnet plyr pROC]; }; + coda_base = derive2 { name="coda.base"; version="0.5.5"; sha256="1jjg0akvi9srdwnk1xibf7lr8vp776xy8ai71g7y15vrbmzyqkfb"; depends=[Matrix Rcpp RcppArmadillo]; }; + coda4microbiome = derive2 { name="coda4microbiome"; version="0.2.1"; sha256="0v7szj1hp5ld5b2yhvrir93dsd888vfr7w17lhslxrdny708q2fv"; depends=[circlize ComplexHeatmap corrplot ggplot2 ggpubr glmnet plyr pROC survival survminer]; }; codacore = derive2 { name="codacore"; version="0.0.4"; sha256="047klw705a4x0b93xvwd6839j30gg9jl1dgwdnkcqjiwn9jx8fb3"; depends=[gtools keras pROC R6 tensorflow]; }; codalm = derive2 { name="codalm"; version="0.1.2"; sha256="09q7i96wga55xl8wwkb4i2sisn97wd21zqpmasykpi1aamzysqki"; depends=[future future_apply SQUAREM]; }; codaredistlm = derive2 { name="codaredistlm"; version="0.1.0"; sha256="1i046kxf71yvgqychj6a3lqrdsgcfhgz1i02mm91ih5nrg2613rg"; depends=[broom compositions ggplot2 knitr]; }; @@ -7671,7 +7799,7 @@ in with self; { codebook = derive2 { name="codebook"; version="0.9.2"; sha256="0hxyzwpjbvfzad8h2428q94m961mmwvv28nagw2d36qxd10awh16"; depends=[dplyr forcats ggplot2 glue haven htmltools jsonlite knitr labeling labelled likert purrr rlang rmdpartials skimr stringr tibble tidyr tidyselect vctrs]; }; codebookr = derive2 { name="codebookr"; version="0.1.6"; sha256="0yrm9kv3ar1lw90ly83y2pzc9233jxyabyrni8fddijg3c3gi802"; depends=[dplyr flextable haven officer purrr rlang stringr tibble tidyr]; }; codebreaker = derive2 { name="codebreaker"; version="1.0.1"; sha256="1k2l2gpcnlg77sb05zyg64w1nzvwn3j7jv5wwsyyjrlkr60kpval"; depends=[beepr cli]; }; - codecountR = derive2 { name="codecountR"; version="0.0.3.1"; sha256="1m4909dzlsm4jz6fncwlhc6qygrszxh81qzpr9yfk9m310va965q"; depends=[]; }; + codecountR = derive2 { name="codecountR"; version="0.0.4.0"; sha256="0b8qz3lzjc8r9ddjspjhc7azwh0i1v8mx9wrk959fafyracq68fk"; depends=[]; }; codemeta = derive2 { name="codemeta"; version="0.1.1"; sha256="0pcip5ycgkva5pg20fcc3vsb09dv4j57yqvbf5x8bdsxa5vpg11a"; depends=[desc jsonlite]; }; codemetar = derive2 { name="codemetar"; version="0.3.5"; sha256="0py4qn9148xlc1ldlifpm7vd7l9dih4f7yiadvmz57b3y2vr0b02"; depends=[cli codemeta commonmark crul desc gert gh jsonlite magrittr memoise pingr purrr remotes sessioninfo urltools xml2]; }; codename = derive2 { name="codename"; version="0.5.0"; sha256="1466zby3yiggvqiwynyvirifi30y9lwms0a4mx73c8x9wfy36px0"; depends=[]; }; @@ -7691,7 +7819,7 @@ in with self; { cofad = derive2 { name="cofad"; version="0.1.1"; sha256="0c27wfdk98mq0531avlgfxf2wmxcjyg39pgl9i37im7ri2s7kpnr"; depends=[]; }; cofeatureR = derive2 { name="cofeatureR"; version="1.1.1"; sha256="1awfrlnbpw9ivfvaahznx6dx5jp8ln0154vh2pznp520q59h1mbs"; depends=[dplyr ggplot2 lazyeval tibble]; }; coffee = derive2 { name="coffee"; version="0.2.0"; sha256="12xf3v2h33pqcahz74sv3hppvzqjlg6gh75sx4qjkqdq29j8s7k4"; depends=[data_table rintcal]; }; - coga = derive2 { name="coga"; version="1.2.0"; sha256="1hrq31w00a2ix30w1xncmxrkxbwbdizsq05axn2kwcvq5miq10yk"; depends=[cubature Rcpp RcppGSL]; }; + coga = derive2 { name="coga"; version="1.2.1"; sha256="1ahpq69b46ahm3859pz5rq9r5p4778pvg4h693b7cm772giz58rf"; depends=[cubature Rcpp RcppGSL]; }; cogmapr = derive2 { name="cogmapr"; version="0.9.3"; sha256="0aqlk6248m3pad0fwarvxvxfn4qfazhdbdplg8haw3aj165szq43"; depends=[dplyr ggplot2 graph magrittr Rgraphviz tidyr]; }; cognitoR = derive2 { name="cognitoR"; version="1.0.4"; sha256="0yxhmr5969ahbhlckvf2xwpi9fmmjahpzr9r9fjw3za91d43i9gz"; depends=[base64enc config dplyr httr jsonlite paws shiny shinyjs]; }; cohortBuilder = derive2 { name="cohortBuilder"; version="0.2.0"; sha256="117gdqga61h24xa1h534837pz34ym5hnfz6731rrm3lnlzd171w6"; depends=[dplyr formatR ggplot2 glue jsonlite magrittr purrr R6 rlang tibble tidyr]; }; @@ -7704,13 +7832,14 @@ in with self; { cold = derive2 { name="cold"; version="2.0-3"; sha256="1y2l1v7s1v3m4nhlnl72n075h53vm93vxmfn4b6269n690wl9s6d"; depends=[cubature MASS]; }; colf = derive2 { name="colf"; version="0.1.3"; sha256="1av82yrp6csw7700ymipd02j73cmzn0apv7ykachjw09nzk86kvj"; depends=[nlsr]; }; collUtils = derive2 { name="collUtils"; version="1.0.5"; sha256="0gbk3lrb2lwq2ixrpcngng6qz6axjb4iyqy5606x1zmjm71c060p"; depends=[Rcpp rJava]; }; - collapse = derive2 { name="collapse"; version="2.0.3"; sha256="16y4qxqr4k04690xn8s6c9fr3igpk34pgxygxkc41gc1na0ym37v"; depends=[Rcpp]; }; - collapsibleTree = derive2 { name="collapsibleTree"; version="0.1.7"; sha256="0b65pbp1wnpsrayqi630ds4r98jvcvynnlp6wxdqrnnr9nzw5343"; depends=[data_tree htmlwidgets]; }; + collapse = derive2 { name="collapse"; version="2.0.7"; sha256="0szvpg4fnzyihcp1rpv4nd3vb1iv902w5m955a7x48k8m50lk1bc"; depends=[Rcpp]; }; + collapsibleTree = derive2 { name="collapsibleTree"; version="0.1.8"; sha256="1i5nmw5w7m8xdgxzim8z8n4w321f42isxbvvajl8ii59pg7drilq"; depends=[data_tree htmlwidgets]; }; collateral = derive2 { name="collateral"; version="0.5.2"; sha256="1wnzgpayjsqnqry0cdmkijyjkkjhbc8hxwlkx7aj9qwaiz7wiibr"; depends=[crayon pillar purrr]; }; collatz = derive2 { name="collatz"; version="1.0.0"; sha256="02dvivahpq3zyiyhx7w36bs3dw1p2r3g167sjf3k173q7rr77p0m"; depends=[gmp]; }; collections = derive2 { name="collections"; version="0.3.7"; sha256="003zlp5s2ilq3pq0imlp7p46jkfihwzg1hkkgk7378ikcbwnz17z"; depends=[]; }; collidr = derive2 { name="collidr"; version="0.1.3"; sha256="18ki8mwf5ihbgfbhdbbk9ljs44js3rqgl1g6g3ch6dynz61sr6hn"; depends=[dplyr jsonlite stringr]; }; collin = derive2 { name="collin"; version="0.0.4"; sha256="0dh3k9rh1ykrd5nvp5nh4q7zvv835hx8ydpyml88d90ksy8za90p"; depends=[dlnm MASS mgcv nlme VGAM]; }; + collinear = derive2 { name="collinear"; version="1.1.1"; sha256="1vflihmpbqhfl9y8a2s5pnj4pjdj9m20mk80lm6lvff1pjwj2sbp"; depends=[dplyr]; }; collpcm = derive2 { name="collpcm"; version="1.2"; sha256="0v7a6mjchkahmxyf68ii051s1hvarb6knkmnhq5lfw8n4bdxh39x"; depends=[gtools latentnet network]; }; colmozzie = derive2 { name="colmozzie"; version="1.1.1"; sha256="0sn7dqg7rnddnmdb10c6scws6kgi1lz4lw8nc698x63z431ah1p8"; depends=[]; }; coloc = derive2 { name="coloc"; version="5.2.3"; sha256="0l318ad8sn151fjibgfvy082ar29f8c6x3qlmmhal2fq2fbbv795"; depends=[data_table ggplot2 susieR viridis]; }; @@ -7734,6 +7863,8 @@ in with self; { colorpatch = derive2 { name="colorpatch"; version="0.1.2"; sha256="18p9hgccp37pbdf437xffkv6z500896v08fsw2jm8zcl9ladygaf"; depends=[colorspace ggplot2 gridExtra TSP]; }; colorplane = derive2 { name="colorplane"; version="0.5.0"; sha256="00jicdyrw6pl2x83qf9x22is21rmi011zziy3hvjw2vqvclxb38i"; depends=[assertthat]; }; colorr = derive2 { name="colorr"; version="1.0.0"; sha256="1wwrgb9fc9gzxxwxrdrkwwrmhqqllv29wr4q8y1shj9d3nzcpwmh"; depends=[]; }; + colors3d = derive2 { name="colors3d"; version="1.0.1"; sha256="0d78y5v329fhaqhw0a0cgkpiajmqb91vl9809fiwnvl2b4x3j51r"; depends=[combinat FNN plyr scales]; }; + colorsGen = derive2 { name="colorsGen"; version="1.0.0"; sha256="0w4qkl4fw7pjfcd2z3nhpkxh8kv3bbq19bi2cg0ivfr83kxa44fj"; depends=[colorspace]; }; colorscience = derive2 { name="colorscience"; version="1.0.8"; sha256="11fy8545g93b8dn2imihsb031lnf5g5z17km8q07q4y6g96xdbdv"; depends=[Hmisc pracma sp]; }; colorspace = derive2 { name="colorspace"; version="2.1-0"; sha256="0k31hazd2rq5lyg3y89y2v5jqadz2qlxd1bhvj89q4aldfxql1q4"; depends=[]; }; colouR = derive2 { name="colouR"; version="0.1.1"; sha256="0dchwa6nqikdm7chzavimc5cayhrbrl0hzr8xg8y15nvb8b2vqj6"; depends=[dplyr ggplot2 httr jpeg pixmap png]; }; @@ -7741,10 +7872,11 @@ in with self; { colourpicker = derive2 { name="colourpicker"; version="1.3.0"; sha256="0415238r7a8xrp3kvq8lczzxz534irj2q1zfbb0pl7xfs6663wn7"; depends=[ggplot2 htmltools htmlwidgets jsonlite miniUI shiny shinyjs]; }; colourvalues = derive2 { name="colourvalues"; version="0.3.9"; sha256="0prrvkj3xi09fbjz9sd12nvqmsm47fkpw9v9kxsrx3wgm1vi49in"; depends=[BH Rcpp]; }; colourvision = derive2 { name="colourvision"; version="2.0.4"; sha256="1abrp6x9wdl5bdbysgziznzmiaik8v4n76b4bgnlk13mwbhfn47h"; depends=[Matrix]; }; + cols = derive2 { name="cols"; version="1.0"; sha256="0ra1zi9bw8s6f1wr0alz7i972kjajlydjb22ws404nvx9g4l594l"; depends=[quadprog Rfast2]; }; cols4all = derive2 { name="cols4all"; version="0.6"; sha256="1vgwb9rpnbwadpbjw9cyvf34w69wp8ml55skdnj59bqmn94a6fq4"; depends=[abind colorspace png stringdist]; }; colt = derive2 { name="colt"; version="0.1.1"; sha256="028jqvgr14ig8jxp8h2lrf7mainzppgqh6v1479qfv4l9is3bnwy"; depends=[crayon]; }; comFuncs = derive2 { name="comFuncs"; version="0.0.6"; sha256="0li89pgvvlzv9gkzkvnpwxl04fx5djsg0w80bk2mj45h5ark5s37"; depends=[shiny]; }; - comat = derive2 { name="comat"; version="0.9.4"; sha256="0wj1j61phc6nxg25pqqf2xapvnxpk5qyigmwk6xi92wnvv5nrd00"; depends=[Rcpp RcppArmadillo]; }; + comat = derive2 { name="comat"; version="0.9.5"; sha256="05kvm4wv5m1mk7lkh69vbzb26xqjxdyvx87r9vx2hmz5wv0vhp7y"; depends=[Rcpp RcppArmadillo]; }; comato = derive2 { name="comato"; version="1.1"; sha256="0lidwr5vw10655p7q0iqzq3phq5y1i86w3bjdv87cwx3m6333bz6"; depends=[cluster clusterSim gdata igraph lattice Matrix XML]; }; combat_enigma = derive2 { name="combat.enigma"; version="1.0"; sha256="1hz1fbjfsmz5m6mzhq7pyvx2pdm0v6f3afpzjnz0xnz30ckfgshr"; depends=[]; }; combinIT = derive2 { name="combinIT"; version="2.0.0"; sha256="1l2ypnrm2qi1z10c2qyyaqqcjgk3mgsh80b3j9zrjwq9zdakrhi5"; depends=[mvtnorm Rcpp RcppArmadillo]; }; @@ -7759,7 +7891,7 @@ in with self; { cometr = derive2 { name="cometr"; version="0.4.0"; sha256="022fz7b94xl56ss1773n3g9zwfjm8mqfqds68ngvfq5498npd9z5"; depends=[callr digest httr jsonlite R_utils R6 yaml]; }; comf = derive2 { name="comf"; version="0.1.11"; sha256="17hby9qah3bd4p3rfhd1lf3yaz5qxxd4p5aaq1ql7jdixb9p51q0"; depends=[plyr reshape]; }; commafree = derive2 { name="commafree"; version="0.1.0"; sha256="0dn6ps6nvinwaxc8js5bq2kg78nzrf7ijbi77c7jan8z50d19m0p"; depends=[]; }; - common = derive2 { name="common"; version="1.0.9"; sha256="1qizisg38kmmszm0g8vj7ipkjadg6s95n56wlf63gq3plnkjnibv"; depends=[]; }; + common = derive2 { name="common"; version="1.1.1"; sha256="0mr5qi5xkbxmaz6f96n5dm5pm7cn2lrhjw0mf7bcdscb9cpm5vi3"; depends=[]; }; commonmark = derive2 { name="commonmark"; version="1.9.0"; sha256="13slfv9xpd5fhccw6xgm274d338gmpvc4sdzd943dm684rd1ml3d"; depends=[]; }; commonsMath = derive2 { name="commonsMath"; version="1.2.8"; sha256="0qbb7c5xqffq17i636qf9ppanxlmph9wym9bz6n4dhscfniw14q8"; depends=[]; }; communication = derive2 { name="communication"; version="0.1"; sha256="08fkllwwcw2llpg5ivxhqghc88qfg1vdy0ciif3xazhhymb8wavb"; depends=[abind diagram GGally ggplot2 gtable gtools igraph magrittr plyr purrr RColorBrewer Rcpp RcppArmadillo reshape2 scales signal tuneR useful wrassp]; }; @@ -7779,23 +7911,24 @@ in with self; { comperes = derive2 { name="comperes"; version="0.2.7"; sha256="1qcrm0mw90gkx0dcka2bsszrmcbl46lrbgp5i58xbws9s5i54lff"; depends=[dplyr magrittr rlang tibble tidyr]; }; competitiontoolbox = derive2 { name="competitiontoolbox"; version="0.7.1"; sha256="0s8n62hssx0qkznf0x6gw9yzlngiqgjw34k9wyhlh5iiwq4fyc3x"; depends=[antitrust ggplot2 rhandsontable shiny trade]; }; compindPCA = derive2 { name="compindPCA"; version="0.1.0"; sha256="1v7fppbb1pswd1d1bw0szmmjc51smnmal5psd98ms5cfm7yv597g"; depends=[factoextra]; }; - compindexR = derive2 { name="compindexR"; version="0.1.1"; sha256="065a5f406zbxqjy7v6r3bqnybxsnvdlds8rdm3kq62smkch7cf4x"; depends=[car dplyr NlcOptim pracma]; }; + compindexR = derive2 { name="compindexR"; version="0.1.3"; sha256="1glc1y6wa1g7zxj1xwj0fgcfsy118xhd637gi8zsz7l9vxj614cp"; depends=[car dplyr NlcOptim pracma]; }; completejourney = derive2 { name="completejourney"; version="1.1.0"; sha256="0ysbpmd7rglz3diy2cpcgvmmcnysradb4ddiwix7kbhzrhvhrdrs"; depends=[curl dplyr progress stringr tibble zeallot]; }; complexNet = derive2 { name="complexNet"; version="0.2.0"; sha256="199zxqsbasd1j598srpb10y8mjw2l4plra1121i9sdsf40bvd7aw"; depends=[]; }; complexity = derive2 { name="complexity"; version="1.1.2"; sha256="0y1rlz456mny4d0kr8rx26qg5frr3zxsbzm1cc76h475vad4ns28"; depends=[combinat shiny]; }; complexlm = derive2 { name="complexlm"; version="1.1"; sha256="0s11yv589g41947x9x457dcbch3wwqhm0v7yczlj02g5c2y63ss2"; depends=[MASS mathjaxr pracma]; }; complexplus = derive2 { name="complexplus"; version="2.1"; sha256="16w9v7d1ckavqmr86l34frr37pkvdn0iqnb17ssb8xaggns5lgqx"; depends=[expm Matrix]; }; complmrob = derive2 { name="complmrob"; version="0.7.0"; sha256="0dvkc5y53041agkjz3rl898hkq686pxzr6flf2qx1g3jbza3pk1y"; depends=[boot ggplot2 robustbase scales]; }; - compositions = derive2 { name="compositions"; version="2.0-6"; sha256="0d0wlrwfpjvz02cwrqpg5bnrf8isz359dl9qqxn9yb6czpmp9ls5"; depends=[bayesm MASS robustbase tensorA]; }; + compositions = derive2 { name="compositions"; version="2.0-7"; sha256="1j1qa0lkb7ywh0q79dklhw4gvkxgvk3qhw3rx9srrlrc7jv22hml"; depends=[bayesm MASS robustbase tensorA]; }; compound_Cox = derive2 { name="compound.Cox"; version="3.30"; sha256="0yl2c51kl6q2j50av1acyaqcj37y4qhk9mjp7niqzq9s9zj2hnp0"; depends=[MASS numDeriv survival]; }; comprehenr = derive2 { name="comprehenr"; version="0.6.10"; sha256="1wlc06swm45nxg9hgik3wj832sr074i3p0j5kxm0i2r74klfy22w"; depends=[]; }; compute_es = derive2 { name="compute.es"; version="0.2-5"; sha256="00133s3l3g70xrfnxgxhvbjr8izvaj9h0c73iaiyjmlgj84x69m8"; depends=[]; }; + comradesOO = derive2 { name="comradesOO"; version="0.1.1"; sha256="0x0y3c4ihfss6rxdd9fws506vip9rr11485icxq41rp4x8zm2rk9"; depends=[doParallel foreach GenomicRanges ggplot2 ggrepel heatmap3 igraph IRanges MASS mixtools R4RNA RColorBrewer reshape2 RRNA S4Vectors seqinr tidyverse TopDom]; }; comsimitv = derive2 { name="comsimitv"; version="0.1.5"; sha256="0g1b14bx0dgy7y24gxlj0r2sgiild14cvr1zmf37df7g3bswn112"; depends=[MASS vegan]; }; con2aqi = derive2 { name="con2aqi"; version="0.1.0"; sha256="1gdd1y6xg26fz199hvryzsnp16qbsz13chqqxyxnkgrai1l72mhf"; depends=[]; }; con2lki = derive2 { name="con2lki"; version="0.1.0"; sha256="005bk3y7il94h7zlkdjlibm1zm9yplbbzlybdjxmckh67sr6d03x"; depends=[]; }; - conStruct = derive2 { name="conStruct"; version="1.0.5"; sha256="0z4a5fj55n2wmhyynfgai4f2mnb53fmqjj2vcn8lldqzpmrk15ad"; depends=[BH caroline doParallel foreach gtools Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; + conStruct = derive2 { name="conStruct"; version="1.0.6"; sha256="00mmlmqk3wixjycmn2wybq4vkq91jmvhjab6pyvfzk1nh3nq428i"; depends=[BH caroline doParallel foreach gtools Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; conText = derive2 { name="conText"; version="1.4.3"; sha256="0ahnbmpphzi2xshmsybphkc9vkj2lr2bi1jssdx97288awwcgayb"; depends=[dplyr fastDummies ggplot2 Matrix quanteda reshape2 stringr text2vec tidyr]; }; - conTree = derive2 { name="conTree"; version="0.3"; sha256="1smbh6bbi2v6fjfyhcl1kk438qcsk98xhgyxiqx5s5zsgfwij4hc"; depends=[]; }; + conTree = derive2 { name="conTree"; version="0.3-1"; sha256="033rxc0sh4crilqqahypd1yhzcxa1m7q10yg7paj637f9syaxcdh"; depends=[]; }; concatenate = derive2 { name="concatenate"; version="1.0.0"; sha256="1kvsw7vwa3hn97ff7r6z21h5ajs74azwv2dk4pzgyaasnbp778hw"; depends=[]; }; concatipede = derive2 { name="concatipede"; version="1.0.1"; sha256="1cmc0pcy9di1bxzj4kgbnvv1avd7xd6jzk43kni7fc5fkcq2jj3x"; depends=[ape dplyr igraph magrittr qualV readxl stringdist stringr tibble writexl]; }; concaveman = derive2 { name="concaveman"; version="1.1.0"; sha256="0b3fx3y60ibb73pqx5591jq1n86242qajfxbz3vzz6rxxspddlcz"; depends=[dplyr jsonlite magrittr sf V8]; }; @@ -7804,7 +7937,6 @@ in with self; { concorR = derive2 { name="concorR"; version="0.2.1"; sha256="15pi24xka83p3hm33rfs9vnfkzywmvpz3hpncgqmc9ifwag0zgra"; depends=[igraph sna]; }; concordance = derive2 { name="concordance"; version="2.0.0"; sha256="1xlm0c91bsbij8dr23fh781c6bg8l74kma6x7nnapkpm7jim279x"; depends=[dplyr purrr rlang stringr tibble tidyr]; }; concordancer = derive2 { name="concordancer"; version="1.0.2"; sha256="1hkm0ybzaiyd2qsic11gjkq2iw7j9rw85rfgrss0qmnak506kim7"; depends=[Rcpp]; }; - concreg = derive2 { name="concreg"; version="0.7"; sha256="0g4my3ra9p797vcky5hsgcicsdbmczgd8fklxrkw2jrgwc0xrkaf"; depends=[survival]; }; concrete = derive2 { name="concrete"; version="1.0.5"; sha256="05hl3ikdh8776hgw0wqz6acir8brkszgg01169q2v1dhgcsnfyjb"; depends=[data_table MASS nleqslv origami Rcpp RcppArmadillo SuperLearner survival zoo]; }; concstats = derive2 { name="concstats"; version="0.1.6"; sha256="1gcv6lsrfdb12alaksmw40fv8p909hifjwrrgy9r12nb4ci3fg0x"; depends=[]; }; cond = derive2 { name="cond"; version="1.2-3.1"; sha256="1j0gf28mg2j6ahs83nk662bix1lb2c9184vn8sblw433zxqaa2ny"; depends=[statmod survival]; }; @@ -7847,12 +7979,13 @@ in with self; { conleyreg = derive2 { name="conleyreg"; version="0.1.7"; sha256="1mvbzqd83vd54ig4kbi1v3h4v0j6pyj8a5ja1f3w2n7k8aszy748"; depends=[data_table doParallel fixest foreach lmtest lwgeom Matrix Rcpp RcppArmadillo Rdpack s2 sf]; }; conmet = derive2 { name="conmet"; version="0.1.0"; sha256="0iwr8mmh9lk0psqxkgnd7ldhg57ivbkv0b3a18gli06983mhzjdc"; depends=[dplyr DT foreign Hmisc lavaan openxlsx purrr semTools shiny shinydashboard shinyWidgets stringr summarytools waiter]; }; connectapi = derive2 { name="connectapi"; version="0.1.3.1"; sha256="00fxy94a0nyw608b1cklh603zql027wqaarxmxwy5f1l7arnwd4s"; depends=[bit64 config dplyr fs glue httr jsonlite lifecycle magrittr progress purrr R6 rlang tibble uuid vctrs yaml]; }; + connections = derive2 { name="connections"; version="0.2.0"; sha256="1hqsp5y32n0v5rij86clk3wmghc32zh9h3s6pjn0yjjsg3v1bvf6"; depends=[DBI dbplyr dplyr pins rscontract uuid]; }; connectwidgets = derive2 { name="connectwidgets"; version="0.2.1"; sha256="0lgr36699hnjwkjx56akwwnzkl5qm587yhqamxr6a53nh1j3h11y"; depends=[bslib crosstalk digest dplyr glue htmltools htmlwidgets httr jsonlite magrittr purrr R6 reactable reactR rlang sass tibble]; }; conogive = derive2 { name="conogive"; version="1.0.0"; sha256="0a8v7v0fds0psfnbx9x45way8z1f1xn2ncgbrn5rb6fjq0a1zs4x"; depends=[assertthat checkmate mvtnorm psych]; }; conos = derive2 { name="conos"; version="1.5.0"; sha256="1wdhb3jxh4id6xaghawzip8s264g9jxp4i5xy7jfhi67yfxszx6w"; depends=[abind ComplexHeatmap cowplot dendextend dplyr ggplot2 ggrepel gridExtra igraph irlba leidenAlg magrittr Matrix N2R R6 Rcpp RcppArmadillo RcppEigen RcppProgress reshape2 rlang Rtsne sccore]; }; conover_test = derive2 { name="conover.test"; version="1.1.5"; sha256="0f1p10klidk1xic1wd48j9rjh2fb3z6pfjx4y021lglx1w3av68k"; depends=[]; }; conquer = derive2 { name="conquer"; version="1.3.3"; sha256="1fnyjym21i9hw2d1c9da0wvjzbi9abn46n0lg6if5w2asxg1bim2"; depends=[Matrix matrixStats Rcpp RcppArmadillo]; }; - conquestr = derive2 { name="conquestr"; version="1.0.7"; sha256="152qnfc9vp1iq06rkb0lyns2h86bsd9pjbq0hq51pp45wmki7yxw"; depends=[dplyr ggplot2 ggrepel kableExtra magrittr Rcpp rlang stringr tidyr tidyselect]; }; + conquestr = derive2 { name="conquestr"; version="1.1.1"; sha256="1vydlqbwdq5jj86rl4sq1inv2js0264lp57q5xiijrhsb06nxp7g"; depends=[dplyr ggplot2 ggrepel kableExtra magrittr Rcpp rlang stringr tidyr tidyselect]; }; conrad = derive2 { name="conrad"; version="1.0.0"; sha256="0n0snn7ppmr1l5y0978sl6bj614p0b5vvh4hw55pjbj9qn1fshaj"; depends=[httr2 jsonlite magrittr]; }; conserveR = derive2 { name="conserveR"; version="1.0.4"; sha256="05b1pqgbd9sh4lyg9zqjfg4019dqp8xj3k1w31qqdld8m3g5lrd6"; depends=[cowplot GGally ggplot2 ggrepel magrittr network rlang scales sna]; }; consolechoice = derive2 { name="consolechoice"; version="1.1.1"; sha256="06xlwrjc9bj8r2ii160mclg56mw9fw2wzms3q68rcb8ril0hqvd3"; depends=[]; }; @@ -7860,7 +7993,8 @@ in with self; { consortr = derive2 { name="consortr"; version="0.9.1"; sha256="1c71wvr7sckrv4k65l71l160z6d9amzyydbi6mf2b79zh9zv8g1g"; depends=[data_table DiagrammeR dplyr magrittr purrr rlang shiny shinydashboard tibble]; }; constants = derive2 { name="constants"; version="1.0.1"; sha256="11nliijwphqphik95b3xpawpjg7w4s089wdhjci5bw4va4bgd1xm"; depends=[]; }; constellation = derive2 { name="constellation"; version="0.2.0"; sha256="1d49rnyf2z3bvx158nsmgmb0x7xcgxl9f8y98pwg5wlqck7af99q"; depends=[data_table]; }; - constructive = derive2 { name="constructive"; version="0.1.0"; sha256="0rvj9c8vzw0c8yqm5v2j8bnnbwzlz43ga2gd3617q2bw455s4hx9"; depends=[cli diffobj ellipsis rlang roxygen2 styler waldo]; }; + constrainedKriging = derive2 { name="constrainedKriging"; version="0.2-7"; sha256="06hx4kj9dfvw16fw3imxkiw1cc4k7a9pky34mrvdwhb205x91dii"; depends=[sf sp spatialCovariance]; }; + constructive = derive2 { name="constructive"; version="0.2.0"; sha256="1k9mzlbjfcqs2a5cm86p6fdcflj2dv17m1rxz3jh0fqpiqy5lp8d"; depends=[cli diffobj ellipsis rlang roxygen2 waldo]; }; contFracR = derive2 { name="contFracR"; version="1.2.1"; sha256="0yigrrs36q9wl8bla65ks1ykf233j33jwcqbhdhygryfhxp5cxab"; depends=[gmp go2bigq Rmpfr]; }; contTimeCausal = derive2 { name="contTimeCausal"; version="1.1"; sha256="0r2mg0b65xk020v0im2nzfq9644nx0ns2vddiybwz3x5c7z1bpvg"; depends=[dplyr survival zoo]; }; contactdata = derive2 { name="contactdata"; version="1.0.0"; sha256="0lh3m5aln47clyc5pmz75sggqnzgkg68wyrla11zbg9isyh581nw"; depends=[]; }; @@ -7878,28 +8012,30 @@ in with self; { controlfunctionIV = derive2 { name="controlfunctionIV"; version="0.1.1"; sha256="0g0nakc1mss7837xhs8bymy4cncljjkj7k0n4dvw44gxbc2l8j15"; depends=[AER dr Formula orthoDr]; }; contsurvplot = derive2 { name="contsurvplot"; version="0.2.1"; sha256="0z0s1ym9np9l8pmgbja46w25zr415laa1w68mjz04hq9wrzjjaca"; depends=[dplyr foreach ggplot2 riskRegression rlang]; }; convdistr = derive2 { name="convdistr"; version="1.5.3"; sha256="1cp2qpyl0jxp0lwznlc94mcigfgysyq9xmi1z7ihd7jxd9mk8aw9"; depends=[dplyr extraDistr ggplot2 MASS pryr RColorBrewer SHELF shiny tidyr]; }; - convergEU = derive2 { name="convergEU"; version="0.5.4"; sha256="0sml8ill3jbf5rf8vi8m74w8q67wsdj1askfn0vmfwr4mvadxsim"; depends=[broom caTools dplyr eurostat ggplot2 ggpubr purrr rlang rmarkdown stringr tibble tidyr tidyselect]; }; + convergEU = derive2 { name="convergEU"; version="0.5.5"; sha256="1c74gmsx97rin057gimmsjjcszsaa40a0dmsbh04aygpfic4qc4l"; depends=[broom caTools dplyr eurostat ggplot2 ggpubr purrr rlang rmarkdown stringr tibble tidyr tidyselect]; }; convertbonds = derive2 { name="convertbonds"; version="0.1.0"; sha256="0xb6b5xqcgapmvrq3ivcknsbg9m4zkwff7i7l7j78nqafdm45jni"; depends=[]; }; - convertid = derive2 { name="convertid"; version="0.1.6"; sha256="1ys3yi2g3m69zwc5qca8szhawgvk1wxny4sv2z6cly0cb119fpz5"; depends=[AnnotationDbi assertthat biomaRt org_Hs_eg_db org_Mm_eg_db plyr rappdirs stringr xml2]; }; + convertid = derive2 { name="convertid"; version="0.1.8"; sha256="0mprymgh5wbh9x6kn98q4r6c6rp2l108ddmp2g7lh9m635ys6v8m"; depends=[AnnotationDbi assertthat BiocFileCache biomaRt httr org_Hs_eg_db org_Mm_eg_db plyr rappdirs stringr xml2]; }; convertr = derive2 { name="convertr"; version="0.1"; sha256="1y9aq5in2qv1323amblmq3g22flpqvpkgkrw12kahg56mqf2b3iq"; depends=[DT miniUI rstudioapi shiny]; }; convevol = derive2 { name="convevol"; version="2.0.1"; sha256="12i8hgyf2d8fgzblcnrqdpz8wlb8fvczp8aqz23pndp6l7isvgyj"; depends=[ape cluster geiger MASS phytools]; }; - convey = derive2 { name="convey"; version="0.2.5"; sha256="0vji97sip7p2xpbd3mhx2a6aw46zjky561rypa3hb8xpag16fna5"; depends=[survey]; }; + convey = derive2 { name="convey"; version="1.0.0"; sha256="1v9rd5270cwr5dygh8xdyqc093qf743j8jvy3f3hds0q9ydx14jh"; depends=[survey]; }; convoSPAT = derive2 { name="convoSPAT"; version="1.2.7"; sha256="1pmiirigjdkrb3pzqcw6qlh6418z384mvaxqw5mrcm1gxzrqp649"; depends=[ellipse fields MASS plotrix StatMatch]; }; cooccur = derive2 { name="cooccur"; version="1.3"; sha256="1wlaghhi4f3v8kzwhcgq3c6as7v3zlpkzhb232qz1amr7f0058kv"; depends=[ggplot2 gmp reshape2]; }; cookiecutter = derive2 { name="cookiecutter"; version="0.1.0"; sha256="0kpyn20xk2sfb5zh18yxl5qjf628max186v1knq4f2mik1n4lwbd"; depends=[fs jsonlite mime purrr readr rlang stringr whisker]; }; + cookiemonster = derive2 { name="cookiemonster"; version="0.0.3"; sha256="1fs8a7i2h1v4xvcjnccnvxapiprffyz49pgrdjp67k14r6nk2fha"; depends=[cli openssl rappdirs stringi tibble urltools vctrs]; }; cookies = derive2 { name="cookies"; version="0.2.3"; sha256="1dpil57grnqn34b682fakzsrh2xghc566nhqdgnrjd7ly59v0z3x"; depends=[cli clock glue htmltools httpuv jsonlite purrr rlang shiny vctrs]; }; cooltools = derive2 { name="cooltools"; version="2.1.27"; sha256="1f22qpwf9ynqf9n4hl0kz6cy8bsz47dcmvz0wawq2isw5wn3jcs5"; depends=[bit64 celestial cubature data_table FNN jpeg MASS plotrix png pracma randtoolbox raster Rcpp sp]; }; coop = derive2 { name="coop"; version="0.6-3"; sha256="0ww99ssgawsgn6rqy838wbx6iirzdrzyxirvz084ih8j50blx420"; depends=[]; }; coopProductGame = derive2 { name="coopProductGame"; version="2.0"; sha256="1348pgqfvvysdixsjibgkvwjsmqasnlmwf9kyr39lw8jb81z25h0"; depends=[dplyr GameTheory ggplot2 gtools kappalab lpSolveAPI]; }; - copBasic = derive2 { name="copBasic"; version="2.2.2"; sha256="0klqvgnrhi9lxiq57ingbp3w3mv8gvhrmlbxnydkya2vmz9rcqk0"; depends=[lmomco randtoolbox]; }; + copBasic = derive2 { name="copBasic"; version="2.2.3"; sha256="0ga6hdy2nlacjr6l2v5xslznqkc51vyblyvnqslvi12q0znb4z9f"; depends=[lmomco randtoolbox]; }; copCAR = derive2 { name="copCAR"; version="2.0-4"; sha256="1wvp7khp0f0x6skiq1d6npndb09ak6d6ijmx907gfrd6b0ydaklb"; depends=[mcmcse numDeriv Rcpp RcppArmadillo spam]; }; copcor = derive2 { name="copcor"; version="2023.8-27"; sha256="0fs6zaxjv7ww2f35hwbdgb810cb4mcqxg260fxk3pfcfq3rwdw9a"; depends=[kyotil]; }; cope = derive2 { name="cope"; version="0.2.3"; sha256="1r02nb6wy25ixhdcbqqz167s7ny3hydpxfxry5ar4136qvcamgyy"; depends=[abind fields maps MASS Matrix mvtnorm nlme]; }; copent = derive2 { name="copent"; version="0.4"; sha256="1v9kv6aw9q43y7mzsmklq0m76sykfs162hwy204k2xcpmnazgdkm"; depends=[]; }; + cophescan = derive2 { name="cophescan"; version="1.3.2"; sha256="047ariqgbpnpiaw5pnl105i62nxdw9aqvaz3a1d5d5j0sdww96ij"; depends=[coloc data_table dplyr ggplot2 ggrepel magrittr matrixStats pheatmap Rcpp RcppArmadillo viridis]; }; coppeCosenzaR = derive2 { name="coppeCosenzaR"; version="0.1.3"; sha256="1chwsfyaf5rmlsypr43n7px8b2220dfa5mzcriq1swylgbx4181l"; depends=[]; }; copre = derive2 { name="copre"; version="0.2.0"; sha256="0xb1xa134r145qaycl0ldldx521gvjlwd9c64nnwmllh01iv7ihb"; depends=[abind BH dirichletprocess pracma Rcpp RcppArmadillo]; }; cops = derive2 { name="cops"; version="1.3-1"; sha256="17lq7ag0bwg3i7jvzca4qyzg8ixhdikrcgpgskkm26i83886zid2"; depends=[cmaes cordillera crs dfoptim GenSA MASS minqa NlcOptim nloptr pso rgenoud Rsolnp scatterplot3d smacof subplex]; }; - copula = derive2 { name="copula"; version="1.1-2"; sha256="1lw72ljkfkynbs1iwfz1ymllfrlfykd5clfav19xzp744m6lbyc8"; depends=[ADGofTest colorspace gsl lattice Matrix mvtnorm numDeriv pcaPP pspline stabledist]; }; + copula = derive2 { name="copula"; version="1.1-3"; sha256="19kp6q052jp0wsn2zh6wz6m9hk04nhwlc2pqwrma9ynny6s6q6cv"; depends=[ADGofTest colorspace gsl lattice Matrix mvtnorm numDeriv pcaPP pspline stabledist]; }; copulaData = derive2 { name="copulaData"; version="0.0-1"; sha256="1s917g8wasxndg1xq4b4fjaq29nyzzigpflgqcy4rxdb7r54dl0z"; depends=[]; }; copulaSim = derive2 { name="copulaSim"; version="0.0.1"; sha256="12mnh0gpxz046kywki9jr6gj574kfwcs1gczzr7zfkvkm5qgga65"; depends=[dplyr magrittr mvtnorm rlang tibble]; }; copulaboost = derive2 { name="copulaboost"; version="0.1.0"; sha256="12mx048mxglaxdkskp9b31rkmhsyfay8m62134nh9k04iqb8zjap"; depends=[rvinecopulib]; }; @@ -7922,7 +8058,6 @@ in with self; { corels = derive2 { name="corels"; version="0.0.4"; sha256="1ygbvhnz304y4y708ygr4x6kbwv7bfpjd5hhcrcc6lma59h7arfn"; depends=[Rcpp]; }; corkscrew = derive2 { name="corkscrew"; version="1.1"; sha256="1nb81r4lsrajcj3xz3f7p6xznnb38yg3rnnh44rd3kabca4d8r1s"; depends=[ggplot2 gplots igraph RColorBrewer]; }; corlink = derive2 { name="corlink"; version="1.0.0"; sha256="06n9pcvbn8y9gy0mn9c0sw05424ss8smpaw3ly6a785cmj3d9b6m"; depends=[]; }; - corncob = derive2 { name="corncob"; version="0.3.2"; sha256="0ipcs9crwlvi1gxqj87318dxx2hv4xrvcinci262z2zq8br1s3ps"; depends=[detectseparation dplyr ggplot2 magrittr numDeriv optimr phyloseq scales trust VGAM]; }; cornet = derive2 { name="cornet"; version="0.0.9"; sha256="1gd0sbf3kqzd8zwkbwbj9d8cyz52iglh1czv5ydf7nw1z8hx33r4"; depends=[glmnet palasso]; }; coro = derive2 { name="coro"; version="1.0.3"; sha256="0wvxdpdh3xrskz5s5wfkva856x849knx1jigbf0ff6s6n6qjjxsf"; depends=[rlang]; }; coroICA = derive2 { name="coroICA"; version="1.0.2"; sha256="0pcz2256liczrn2gik8b5331rgzlxjrm7rzn1ialhifkiinifnva"; depends=[MASS]; }; @@ -7944,14 +8079,15 @@ in with self; { correlationfunnel = derive2 { name="correlationfunnel"; version="0.2.0"; sha256="0xil7cihqk7gzpy0q97sg5sw5z0gy7zqvx0f0bizcfks9gwp43cv"; depends=[cli crayon dplyr forcats ggplot2 ggrepel magrittr plotly purrr recipes rlang rstudioapi stringr tibble tidyr]; }; correlbinom = derive2 { name="correlbinom"; version="0.0.1"; sha256="1ix3ccxzr7vqblbda5awsva3h95b69v7kc6adz622bbi8r36xxcq"; depends=[Rmpfr]; }; correspondenceTables = derive2 { name="correspondenceTables"; version="0.7.4"; sha256="1078da9m8j8ph314f6bdvdcd70rfmjdk7cscchfpq5ggyr2hkrpk"; depends=[data_table]; }; + corrfuns = derive2 { name="corrfuns"; version="1.0"; sha256="07d15qyp7nbnr5qzvkhfrm0a7rl7asiqkv2s8q0wd4jwiml1v3lj"; depends=[Rfast]; }; corrgram = derive2 { name="corrgram"; version="1.14"; sha256="12dhvwaprdmzxxk52w8sb3cx99dmzb9yhcm01pri0vcz671p57v1"; depends=[]; }; corrgrapher = derive2 { name="corrgrapher"; version="1.0.4"; sha256="0s10n2av6dyjz6x4wvznpcbvpp63v6k3r9whkqsg7fiy9m3d4dr9"; depends=[ggplot2 htmltools ingredients knitr visNetwork]; }; corrplot = derive2 { name="corrplot"; version="0.92"; sha256="1g98jk6xsl08z4n6sy5vriif99m31zhbz7j3dh1kfj4w7yb9zh78"; depends=[]; }; corrr = derive2 { name="corrr"; version="0.4.4"; sha256="0hdas6pd6adv89wp8s5v4slv6i9agrbbn2jcnfij1l7hq01a30j5"; depends=[dplyr ggplot2 ggrepel glue purrr rlang seriation tibble]; }; corrsieve = derive2 { name="corrsieve"; version="1.6-9"; sha256="0v8338j2x9prf3fysp4yzd6x34zjmp4yyiaar6ck1wgcfprk2dd4"; depends=[]; }; - corrtable = derive2 { name="corrtable"; version="0.1.0"; sha256="1bkv3yb5xhqj046mdbbfccn070ln9pmdallmz3bg5lliyjm0aaf6"; depends=[Hmisc]; }; + corrtable = derive2 { name="corrtable"; version="0.1.1"; sha256="0l1kvr62lgixzn0hl5xqzpddksw6w8iwrqg4vycbl0gsgvyhm302"; depends=[Hmisc]; }; corset = derive2 { name="corset"; version="0.1-5"; sha256="0b4pa450mzig7xmzgz5q8b1492yqcvz5n4i1x74f3vf337d9c4i7"; depends=[]; }; - corto = derive2 { name="corto"; version="1.2.2"; sha256="0y76nk13si6khc5inlcyshsapw8ljv6x7s5vifh2cq0bla87471x"; depends=[dplyr gplots knitr pbapply plotrix]; }; + corto = derive2 { name="corto"; version="1.2.4"; sha256="1rlr96kdn59vbcsjwys3brlaa8fm0jkg331dnr6fcq1z798snkb3"; depends=[dplyr gplots knitr pbapply plotrix rmarkdown]; }; corx = derive2 { name="corx"; version="1.0.7.2"; sha256="0dyrxw90xrs1sqzniqxh8rnafcng38qrm5izwlgpfafihipx9ss8"; depends=[clipr crayon ggcorrplot ggplot2 ggpubr glue moments ppcor tidyselect]; }; cosa = derive2 { name="cosa"; version="2.1.0"; sha256="15ygpaqd48xqx0h08v0nf73yzif63r2nzcznlmk0ck2ydx4n85fp"; depends=[msm nloptr]; }; cosinor = derive2 { name="cosinor"; version="1.2.3"; sha256="0nyvzmqk0rhx10fki29hcrz014bv3r40adqd5d6rbcz66kc4sjy3"; depends=[ggplot2 shiny]; }; @@ -7976,14 +8112,16 @@ in with self; { countgmifs = derive2 { name="countgmifs"; version="0.0.2"; sha256="0k6fjg0v9n7vi89wd025gdjh1q3l6nnc5yn8i2bfw0i5vmv8rhi3"; depends=[MASS]; }; countland = derive2 { name="countland"; version="0.1.1"; sha256="0rphpsxfssvrrh8y2kfqzy6im9ga8isl86j0kg7418b6v260l3sh"; depends=[ggplot2 Matrix rlang]; }; countprop = derive2 { name="countprop"; version="1.0.1"; sha256="0yzrh8zr95b912p3lv0fw7vv5faylwyda0cwfvyg48j98c8hx3yf"; depends=[compositions glasso zCompositions]; }; - countries = derive2 { name="countries"; version="1.0.5"; sha256="18dbax73xq379v63vmnn64qxiil83wvzkm05kqv18jq8q2wgwm69"; depends=[dplyr fastmatch ggplot2 httr jsonlite knitr lubridate stringdist stringr tidyr viridis]; }; + countries = derive2 { name="countries"; version="1.1.1"; sha256="0swmg7vp6ma1ih66rjb84i3p4l34jn0018ria3dwvjasd1i1jva4"; depends=[dplyr fastmatch ggplot2 httr jsonlite knitr lubridate stringdist stringr tidyr viridis]; }; countrycode = derive2 { name="countrycode"; version="1.5.0"; sha256="035c8dm1ppkdvjhc78dfmhbyc2n048gkx4q6y5s0ffn3bpymsxzw"; depends=[]; }; countsplit = derive2 { name="countsplit"; version="4.0.0"; sha256="0b406mpf5gqspjj828qbqx6mc5ab97mh5w4pip8hb8j74q8szpcc"; depends=[Matrix Rcpp]; }; - coursekata = derive2 { name="coursekata"; version="0.14.0"; sha256="17ad24xipyx6dcqflrv1gbia38dsk62w8a3hjydz7aw426spqkx5"; depends=[cli dslabs ggformula ggplot2 glue Lock5withR lsr Metrics mosaic pak palmerpenguins purrr rlang supernova vctrs viridisLite yesno]; }; + countts = derive2 { name="countts"; version="0.1.0"; sha256="11pyj5s2vyw209inapiw9pvk0s1aq3r2c1xq0dnc83sz82bxx6c4"; depends=[fastDummies ggplot2 MASS matrixStats]; }; + coursekata = derive2 { name="coursekata"; version="0.15.0"; sha256="06w8ql6frbbr41q0d1y3gpjwkhlfkhyv45mjlxpg5q0k8r0ydvwi"; depends=[cli dslabs ggformula ggplot2 glue Lock5withR lsr Metrics mosaic pak palmerpenguins purrr rlang supernova vctrs viridisLite]; }; covBM = derive2 { name="covBM"; version="0.1.0"; sha256="0ky1lhr8m4hy2ss1nr2xymf6cmj1rr8px8zsxna6bsisf5bq4j4w"; depends=[nlme]; }; covKCD = derive2 { name="covKCD"; version="0.1"; sha256="0rbrhdrrb47gkm8nk8mmlgrr1fsk53fycl9zspgr9085xax2bf2r"; depends=[]; }; covRobust = derive2 { name="covRobust"; version="1.1-3"; sha256="0zcfala4l0j4w0sx5hlw40vxiypans3d7pgkxy25nj0d2m1jkvba"; depends=[]; }; covTestR = derive2 { name="covTestR"; version="0.1.4"; sha256="0j9kay8lwkhpdyg0fbfars1m58v0i58v1v5sm7m72s7kz8qh2yfs"; depends=[purrr Rcpp RcppArmadillo rlang]; }; + covadap = derive2 { name="covadap"; version="1.0.1"; sha256="14vpd2sm8wc16axfc22f0bfardn60s2l1vc715bf1pbwfi83dfgw"; depends=[]; }; covafillr = derive2 { name="covafillr"; version="0.4.4"; sha256="1vsay0qlqcw3l6xp18rxrkhwsadsv9rpxwpj9f4d3vlr8inkiv4h"; depends=[Rcpp RcppEigen]; }; covatest = derive2 { name="covatest"; version="1.2.3"; sha256="04pycgxiq3h2j70vzqac5li0iqsyg005zpqfjr9iw17y0p51jv0a"; depends=[gstat lubridate mathjaxr sp spacetime V8 zoo]; }; covdepGE = derive2 { name="covdepGE"; version="1.0.1"; sha256="0xlz01h6lnp7g9vi9s84l8cmgqvr4pql1fs0c1n51gsx4pkaz5l1"; depends=[doParallel foreach ggplot2 glmnet latex2exp MASS Rcpp RcppArmadillo reshape2]; }; @@ -8002,43 +8140,44 @@ in with self; { covid19sf = derive2 { name="covid19sf"; version="0.1.2"; sha256="0x89j94sg539qc7qd2n2vi8bi1lagqkdc2ss5ld7vj4l78r5zk4l"; depends=[devtools dplyr lubridate magrittr mapview plotly sf]; }; covid19srilanka = derive2 { name="covid19srilanka"; version="1.1.0"; sha256="08s0c33f890i6lnwxa3gw5xf8qirj7bi1hzcs5cr2dzmfs28m5yb"; depends=[]; }; covid19swiss = derive2 { name="covid19swiss"; version="0.1.0"; sha256="083j4568j7yk7l4qj6097zp0ijq70ycvwvmbfqp3dwazmibamy34"; depends=[devtools]; }; + covid19tunisia = derive2 { name="covid19tunisia"; version="0.1.0"; sha256="1qx1rrv7ak77brg80bcj8k7vn26193njda7pg93lj1x3dpfh13dm"; depends=[dplyr glue knitr lubridate magrittr readr stringr tidyr]; }; covid19us = derive2 { name="covid19us"; version="0.1.9"; sha256="1vzxvrifs49v66mc85nxfmpk82hcjrr3lpw0mwy3wj7r5vxdrwh0"; depends=[curl dplyr glue httr lubridate magrittr purrr snakecase stringr tibble tidyr]; }; covidcast = derive2 { name="covidcast"; version="0.5.2"; sha256="0d4x3cydjng0f0gzn8fly44hf2viypym6ag7mzwips7791rhcm6k"; depends=[dplyr ggplot2 httr MMWRweek purrr rlang sf tidyr xml2]; }; covidmx = derive2 { name="covidmx"; version="0.7.7"; sha256="1m73pxpn080w7sby88spz2pfjw1v479m9fa74ag25mkdymfbh02d"; depends=[cli DBI dplyr duckdb fs pins RCurl readr readxl rlang stringr tibble tidyr]; }; covidnor = derive2 { name="covidnor"; version="2023.05.18"; sha256="1aidi1bwsp1a8iym5b6chmv95cxrafhjgzn1zaajbijlgrjdqixc"; depends=[data_table]; }; covidprobability = derive2 { name="covidprobability"; version="0.1.0"; sha256="00kiwxhkbq70650azgd6ylh7w7w4h5l8l7rmr2bijlm05xn3g154"; depends=[]; }; covidsymptom = derive2 { name="covidsymptom"; version="0.9.3"; sha256="0svfc911n6cl056vn7l9khg4c6rc54qhxsgjg3jpxqvikyqmmrx7"; depends=[]; }; - covr = derive2 { name="covr"; version="3.6.3"; sha256="17m2zzgfghr7gzcdgim21vsl12nd4714867dcp9xfb6ili31ikn0"; depends=[crayon digest httr jsonlite rex withr yaml]; }; + covr = derive2 { name="covr"; version="3.6.4"; sha256="0al6n4gnnvgxk968skqnajpqpqyl6kpam3fmn782kihhcl1h8qib"; depends=[crayon digest httr jsonlite rex withr yaml]; }; covsep = derive2 { name="covsep"; version="1.1.0"; sha256="19dvwhl85yx9ddwxvnq5sdd534s6llcw61gckrav48hq49x1bqld"; depends=[mvtnorm]; }; covsim = derive2 { name="covsim"; version="1.0.0"; sha256="0kzlqdhx67hfm0f53yb438qfi4vlcf2j3cpyj2r49zgpwwgfk21p"; depends=[gsl lavaan MASS Matrix nleqslv PearsonDS Rcpp rvinecopulib tmvtnorm]; }; cowbell = derive2 { name="cowbell"; version="0.1.0"; sha256="1zz0g30zvqfk5lh09y90iq3s7x2wwbs852i3d56mfp926gxdxc2y"; depends=[ggplot2 misc3d rgl]; }; - cowplot = derive2 { name="cowplot"; version="1.1.1"; sha256="0j7d5vhzdxn1blrsfafx5z8lhq122rp8230hp9czrpsnnhjydp67"; depends=[ggplot2 gtable rlang scales]; }; - cowsay = derive2 { name="cowsay"; version="0.8.2"; sha256="1c1dawk3w9wipbbllf2408wdvasj7c49sv310nn5w3i56sind5zx"; depends=[crayon fortunes rmsfact]; }; + cowplot = derive2 { name="cowplot"; version="1.1.2"; sha256="1ppsg3rbqz9a16zq87izdj5w8ylb6jb6v13xb01k7m3n2h4mv4f6"; depends=[ggplot2 gtable rlang scales]; }; + cowsay = derive2 { name="cowsay"; version="0.9.0"; sha256="18jr8v0c4vvwvixklcl3kggwzhq1xnpi3brdjiby48zh873b2chd"; depends=[crayon fortunes rmsfact]; }; coxed = derive2 { name="coxed"; version="0.3.3"; sha256="09jnqza8wp2palayb0vsz43qmh8470gxil1l7g3b65lmxa7wpmnh"; depends=[dplyr ggplot2 gridExtra mediation mgcv PermAlgo rms survival tidyr]; }; coxerr = derive2 { name="coxerr"; version="1.1"; sha256="1lsfd2in82i2qp5l04k8d7jm3x0lii81f3xnfpxlhlzsypf96cia"; depends=[]; }; coxme = derive2 { name="coxme"; version="2.2-18.1"; sha256="1x9i0nn4bivjv7xfxa29ng7q44v405zb4skv7p29al779vbr3xmf"; depends=[bdsmatrix Matrix nlme survival]; }; - coxmeg = derive2 { name="coxmeg"; version="1.1.4"; sha256="10g4l33iwv09lm9j32kh1i003b3351v9ss3wrd6a497xgz20krhr"; depends=[MASS Matrix microbenchmark nloptr rARPACK Rcpp RcppEigen SeqArray SNPRelate]; }; coxphMIC = derive2 { name="coxphMIC"; version="0.1.0"; sha256="0lmma5wzcczr762xqa4yamvwvyviqxk8gdrps3sydg3n14hckp6d"; depends=[numDeriv survival]; }; coxphSGD = derive2 { name="coxphSGD"; version="0.2.1"; sha256="17ga33v7a89dsygk5yypkz03x7dvjhibnwlvwfvgb2p7djd8w465"; depends=[survival]; }; coxphf = derive2 { name="coxphf"; version="1.13.4"; sha256="1miljwgkrzm4xpy5vbs519pzi1aycgr1n6gdd3m5w9x0fm2i7syw"; depends=[generics survival tibble]; }; - coxphw = derive2 { name="coxphw"; version="4.0.2"; sha256="08bfl21608i5jkk993qjpnh36xbfsm2xx22rpff0v6ipalj9vmj2"; depends=[survival]; }; + coxphw = derive2 { name="coxphw"; version="4.0.3"; sha256="06fp31amdqsq35glk1028w5v67i0k9k23gxnyqivi8s4fh66lwi6"; depends=[survival]; }; coxrobust = derive2 { name="coxrobust"; version="1.0.1"; sha256="1g8z82y12b2lkw4ifxiidmwy3nrvgp2y2cwcahhdg616shwc27sb"; depends=[Rcpp RcppArmadillo survival]; }; coxrt = derive2 { name="coxrt"; version="1.0.3"; sha256="1xggczjx5psl4m4m83vh4y6swnh3pf9rngnzx3268iznfz1g43h2"; depends=[BB ggplot2 gss inline Rcpp RcppArmadillo survival]; }; coxsei = derive2 { name="coxsei"; version="0.3"; sha256="1k3xsjwv1ji8n2qry2j93svr8a114mxkdl5y2zwz7mp82dmv0ld6"; depends=[]; }; cp4p = derive2 { name="cp4p"; version="0.3.6"; sha256="1zddkkj0ynvfck3kw1682wffbxw0d3dc4flmxxp03lclq70fc8bd"; depends=[limma MESS multtest qvalue]; }; cpa = derive2 { name="cpa"; version="1.0.1"; sha256="10g2pvjz396m3mis1bp8bggx9gvbhdd5yqf3sgwkimn9wgccymbq"; depends=[]; }; cpd = derive2 { name="cpd"; version="0.3.2"; sha256="049df4ip3x7v9zviw7b4m1hp2w4gpfi6cq066mqal41frgvfmwdb"; depends=[dgof hypergeo Rdpack]; }; - cpfa = derive2 { name="cpfa"; version="1.0-8"; sha256="1rpdgy7h6kg52d8j2x99ihs44ahgdk5qd2951cizrl0h6lx1ba6s"; depends=[doParallel e1071 foreach glmnet multiway nnet randomForest rda]; }; + cpfa = derive2 { name="cpfa"; version="1.1-0"; sha256="1pjycw5l05r8nw4yczm76i1i6dribi14gb3b7k3r5n740a38x387"; depends=[doParallel e1071 foreach glmnet multiway nnet randomForest rda]; }; cpi = derive2 { name="cpi"; version="0.1.4"; sha256="1gz92jcl8wg2vp8qhnkn37l2xs8wjdbjvnga22v9n943k9zsk2kh"; depends=[foreach knockoff lgr mlr3]; }; cplm = derive2 { name="cplm"; version="0.7-11"; sha256="0pcq5ska1v6kvp8ipw9clczk4w0p10lbxw2xnkhps0wqdrspsqwm"; depends=[biglm coda ggplot2 Matrix minqa nlme reshape2 statmod tweedie]; }; cplots = derive2 { name="cplots"; version="0.5-0"; sha256="12nac8hywhsfh2fcv30w36la46hvvp5mwc2rrq34smraig0dq8f3"; depends=[circular]; }; cpm = derive2 { name="cpm"; version="2.3"; sha256="07zbvc5jkwv76lkzby6r073fxjsqgnrdl2w9lcph577knnip89jx"; depends=[]; }; cpmBigData = derive2 { name="cpmBigData"; version="0.0.1"; sha256="0fdch6hj6l620gj0pk8ffrl9j2rmd9jlin7yx7myfy46qij1cxpi"; depends=[benchmarkme doParallel foreach Hmisc iterators rms SparseM]; }; cpop = derive2 { name="cpop"; version="1.0.6"; sha256="0f7rxyh8m6w45cja02mip91p72bjlygrc0rdggbls50l63w1qczj"; depends=[crops ggplot2 mathjaxr pacman pracma Rcpp Rdpack]; }; - cpp11 = derive2 { name="cpp11"; version="0.4.6"; sha256="1csmj1cl07lsbrg8qp26cs0lx1p0zi7alanmi83rhcqxcxa6kifi"; depends=[]; }; + cpp11 = derive2 { name="cpp11"; version="0.4.7"; sha256="0i234s1g1vc6m2sqxia5r1gaca05znjv4bff5dj74fach9k147c0"; depends=[]; }; cppRouting = derive2 { name="cppRouting"; version="3.1"; sha256="1mhp6k2kwlhyrswlxi9f0f6ndvm5968ljp3k97c2m2sfbxaablxy"; depends=[data_table Rcpp RcppParallel RcppProgress]; }; cppcheckR = derive2 { name="cppcheckR"; version="1.0.0"; sha256="1f3b8gadpiyxwxp34pd3i7s715dkm23427fp86vvnqvy9schg3ga"; depends=[htmlwidgets rmarkdown rstudioapi shiny V8 xml2]; }; - cpr = derive2 { name="cpr"; version="0.2.3"; sha256="1a2lza1bw74xzrs17a9gr9mnpvnnrykhwd73yqi63wp3k4sm42rb"; depends=[dplyr ggplot2 lazyeval lme4 magrittr plot3D Rcpp RcppArmadillo rgl tibble tidyr]; }; + cppdoubles = derive2 { name="cppdoubles"; version="0.1.1"; sha256="0ggm9nah0cwzgzxb10gflpdbrgpzz5xk1ifiq0k5jk8zlg8slcpx"; depends=[cpp11]; }; + cpr = derive2 { name="cpr"; version="0.3.0"; sha256="1vs9726v1qv099sbsfhny32qhz7w6y3smlrkfm6vnyx648l1d85z"; depends=[ggplot2 lme4 plot3D Rcpp RcppArmadillo scales]; }; cprobit = derive2 { name="cprobit"; version="1.0.2"; sha256="16fnndpkd226paahmadsddakj4yhybw7lp3csr73fwv78zfl2fj9"; depends=[car ggplot2 gridExtra nortest]; }; cprr = derive2 { name="cprr"; version="0.2.0"; sha256="049xnma0rdnya7zp05iraq15nwjgmdmli9g7xxprab822047vld7"; depends=[]; }; cpsR = derive2 { name="cpsR"; version="1.0.0"; sha256="06sdsqc17cnkn9zgy62dv56am7f1jvxiw205l7hbqlab4gbdp92a"; depends=[httr jsonlite tibble]; }; @@ -8051,7 +8190,7 @@ in with self; { cquad = derive2 { name="cquad"; version="2.3"; sha256="0m8hakw0k58v3gb24vvcs7q7l98m2nmyqv712wdn9g16krq49hnr"; depends=[Formula MASS plm]; }; cragg = derive2 { name="cragg"; version="0.0.1"; sha256="1iznv72g47r2yd26p1i06a72p8n0albgb4j4l3lndi39wrkrpbwd"; depends=[expm]; }; cramer = derive2 { name="cramer"; version="0.9-3"; sha256="1kdad8nndhics4282gfy9ncllk2kpawdy8ybq71vcd7hc7kf0zq5"; depends=[boot]; }; - crandep = derive2 { name="crandep"; version="0.3.2"; sha256="16h42s875h90mra346y0cxwqwnahdrcskhb35j8dl3s8389sfai0"; depends=[dplyr igraph Rcpp RcppArmadillo rvest stringr xml2]; }; + crandep = derive2 { name="crandep"; version="0.3.4"; sha256="1nl6mdqfv2wvdmkld1aiysl16mx96l5mdmwhzh0ql9jly5j6a86v"; depends=[dplyr igraph Rcpp RcppArmadillo rvest stringr xml2]; }; crank = derive2 { name="crank"; version="1.1-2"; sha256="0wwbdh5sfi2bg13nrlkxxij4k053kjx9afm4gjpgs6iir6pml711"; depends=[]; }; cranlike = derive2 { name="cranlike"; version="1.0.2"; sha256="06xgxgwpmfrwmcd0gnr9prjjbhd1y0ky1zb8yh09v0bvsf6ixnyx"; depends=[DBI debugme desc RSQLite]; }; cranlogs = derive2 { name="cranlogs"; version="2.1.1"; sha256="02d9qrqyjj33naq3g7ykaw9dzzl1dq8qf13id6h7kfx1fvx9b7zd"; depends=[httr jsonlite]; }; @@ -8069,13 +8208,14 @@ in with self; { credsubs = derive2 { name="credsubs"; version="1.1.1"; sha256="19l3vsjxd9lvaf67l61x9l0j4y124p93dfqzw7rl1ya5sxbdzs7a"; depends=[]; }; credule = derive2 { name="credule"; version="0.1.4"; sha256="0kwjjkavch21grx845kdcansaj0g407v7z3wmhy4whra9ic12y76"; depends=[]; }; cregg = derive2 { name="cregg"; version="0.4.0"; sha256="1a34jhdk4r9ywsrc5dc8wq5am3059cli60f6n2n8j04ls13fvlkd"; depends=[ggplot2 ggstance lmtest sandwich scales survey]; }; - crew = derive2 { name="crew"; version="0.6.0"; sha256="0b19z7y1n3l968npn9ggdxh1vfzw854wbpkrw2sk0h3fj7r49hsf"; depends=[data_table getip mirai nanonext processx ps R6 rlang tibble tidyselect]; }; - crew_cluster = derive2 { name="crew.cluster"; version="0.1.3"; sha256="04v7fajfanap564lvw8izg5srhq9mf415z05rim41k1038f93pav"; depends=[crew lifecycle R6 rlang]; }; + crew = derive2 { name="crew"; version="0.8.0"; sha256="1x5jg4k2p5g82bq7nzdl9598fjs3z3wvdzs9dz87bhgqbp7v1jmf"; depends=[cli data_table getip mirai nanonext processx ps R6 rlang tibble tidyselect]; }; + crew_aws_batch = derive2 { name="crew.aws.batch"; version="0.0.1"; sha256="1wswky9wj59p1x3nzbnnfafkbp7b4aii4ycyy2z81gxah5l5kklv"; depends=[crew paws_common paws_compute paws_management R6 rlang tibble]; }; + crew_cluster = derive2 { name="crew.cluster"; version="0.2.0"; sha256="0sv73n5zm94fypncnrnz53mc23qjbr20jxdri282q0jnaq2wchaz"; depends=[crew lifecycle ps R6 rlang vctrs xml2]; }; crfsuite = derive2 { name="crfsuite"; version="0.4.2"; sha256="15ldbx8g9xa6sql6is2gcqryzqb9dad1hiarvrgmizdp5fd3gxnm"; depends=[data_table Rcpp]; }; cricketdata = derive2 { name="cricketdata"; version="0.2.3"; sha256="07sj53c2ryvcichsa9b0ywmrslisbr4hkrnrf1crw7x1ym55hsan"; depends=[cli dplyr janitor lubridate readr rvest stringr tibble tidyr xml2]; }; cricketr = derive2 { name="cricketr"; version="0.0.26"; sha256="1y1zf9f59v95knggq5nna5rp7fqpv1swwvkajwqbpicc12g2azq4"; depends=[dplyr forecast ggplot2 httr lubridate plotrix scatterplot3d XML]; }; crimCV = derive2 { name="crimCV"; version="1.0.0"; sha256="0jj1m0f65pp7w6ml4dwj73y2n9q02nizp5jqi9ph7klk8x069hzk"; depends=[]; }; - crimedata = derive2 { name="crimedata"; version="0.3.1"; sha256="16xccfh64qza617d7k9swahchij57skh8wwnj7gxlpasknx11wwf"; depends=[digest dplyr httr purrr rlang sf stringr]; }; + crimedata = derive2 { name="crimedata"; version="0.3.5"; sha256="16b413drkxccxcq269spl6rwfmy61pwl7xq237g018nih439ym7d"; depends=[digest dplyr osfr purrr rlang sf stringr]; }; crimeutils = derive2 { name="crimeutils"; version="0.5.1"; sha256="0jsh2b1kv8r9x8sx1s2x6dpc8jyfnjsinycqb5wck5jcsswswgd6"; depends=[dplyr ggplot2 gridExtra gt magrittr readr rlang scales stringr tidyr]; }; crisp = derive2 { name="crisp"; version="1.0.0"; sha256="1gs8jnd9y9pd55w6kwv9mvmg3wd8hjiw3lwx7k242pxccsxklfxq"; depends=[MASS Matrix]; }; crispRdesignR = derive2 { name="crispRdesignR"; version="1.1.7"; sha256="0z0sc0plq6x68b70pprzr7p7wpv8zsvg9ygi0gv1djh5j4wiaiz1"; depends=[BiocGenerics Biostrings DT gbm GenomeInfoDb GenomicRanges IRanges rtracklayer S4Vectors shiny stringr vtreat]; }; @@ -8093,7 +8233,7 @@ in with self; { crop = derive2 { name="crop"; version="0.0-2"; sha256="1yjpk7584wrz9hjqs21irjnrlnahjg8lajra9yfdp6r927iimg1l"; depends=[]; }; cropDemand = derive2 { name="cropDemand"; version="1.0.3"; sha256="14frz3pdb3z8w513r64k0w8p6fs0gv04dazpwvjw6ky384wcd3w6"; depends=[dplyr ggplot2 ncdf4 sf terra tidyr]; }; cropZoning = derive2 { name="cropZoning"; version="1.0.3"; sha256="0i9pglcfcrhw8i1731hhrc2v130dq7kr8w57yg9fmwdr46arnk24"; depends=[ggplot2 ncdf4 sf terra tidyr]; }; - cropcircles = derive2 { name="cropcircles"; version="0.2.3"; sha256="1ggiw0qxwv3j36dhiq7fvw4zj0lqqsfcp9756hsr0cb83srfczwb"; depends=[glue magick purrr]; }; + cropcircles = derive2 { name="cropcircles"; version="0.2.4"; sha256="16by5gqdzgkd2qycslnxfhphpcil9w31mf9p4am9pzcc1gi06a71"; depends=[glue magick purrr]; }; cropdatape = derive2 { name="cropdatape"; version="1.0.0"; sha256="19bn0apx4p8hnz388zg7sq59qv89vv8k5php317kcv7ai2k2gh34"; depends=[]; }; cropgrowdays = derive2 { name="cropgrowdays"; version="0.2.0"; sha256="1vvyknbgnz0d5f4rjl3vw4a9adzgwqkzxb2wnf2x6yqfhniw6s2p"; depends=[dplyr httr lubridate purrr purrrlyr tibble]; }; crops = derive2 { name="crops"; version="1.0.3"; sha256="0c1xvfnr4dh720x0i3f6nvmzgv8zbs7cvp8vfa341yb92pz4d6s0"; depends=[cowplot ggplot2 magrittr memoise Rdpack reshape sets tibble tidyverse]; }; @@ -8102,8 +8242,8 @@ in with self; { crossmap = derive2 { name="crossmap"; version="0.4.0"; sha256="079ibxhm6877nfdqf88fhg9fjdn3vbs44jprrbhxmmbbd30nma4v"; depends=[backports cli dplyr generics lifecycle purrr rlang vctrs]; }; crossnma = derive2 { name="crossnma"; version="1.2.0"; sha256="0ma07lvf56z1ya587lb4zv8rbhzi8crnsgvh3xsz80livx9cdvp5"; depends=[coda dplyr ggplot2 magrittr meta netmeta plyr rjags rlang tidyr]; }; crossrun = derive2 { name="crossrun"; version="0.1.1"; sha256="1v2khjb77g63ls6s15z9hy81z4hyf89g58jxjl94jrkznq1c4fa4"; depends=[Rmpfr]; }; - crosstable = derive2 { name="crosstable"; version="0.6.2"; sha256="1i8ij5vzzjrxvbnbfxkdm37yl53y154l6csfi4d7i285x8k4bp9b"; depends=[checkmate cli dplyr flextable forcats glue lifecycle officer purrr rlang stringr tibble tidyr]; }; - crosstalk = derive2 { name="crosstalk"; version="1.2.0"; sha256="180y7mhpj17axpadwhh7s0qvrpdnag7g977vk256l96d6nmvlds2"; depends=[htmltools jsonlite lazyeval R6]; }; + crosstable = derive2 { name="crosstable"; version="0.7.0"; sha256="1xghynjnrk89952sa9i6rxjqnnw2w2bdf722n91k1jgcg15gkvy9"; depends=[checkmate cli dplyr flextable forcats glue lifecycle officer purrr rlang stringr tibble tidyr]; }; + crosstalk = derive2 { name="crosstalk"; version="1.2.1"; sha256="1w8lc3hcd1nlw541880vs3agk2i6bilyapnq9lcs3mfn2s2g0338"; depends=[htmltools jsonlite lazyeval R6]; }; crosstalkr = derive2 { name="crosstalkr"; version="1.0.4"; sha256="0vb0p455s2gp0nm1hxm9iikxr4mal52mbkq6nv6zxr78wwsxcwa1"; depends=[doParallel dplyr ensembldb foreach ggplot2 igraph iterators magrittr Matrix Rcpp readr rlang STRINGdb stringr tibble tidyr withr]; }; crossurr = derive2 { name="crossurr"; version="1.0.6"; sha256="16fq6hdfc6nsdijj63fji3bn3hp40m350qjxhf8a3xs5j86vf43j"; depends=[dplyr gbm glmnet glue pbapply purrr ranger RCAL rlang SIS SuperLearner tibble tidyr]; }; crossval = derive2 { name="crossval"; version="1.0.5"; sha256="0rvfglnd75aa2ib8v6ibv8ywyh8v4m98ybhgc9h7a2qhk825a2w9"; depends=[]; }; @@ -8112,7 +8252,7 @@ in with self; { crossword_r = derive2 { name="crossword.r"; version="0.3.6"; sha256="1s31613s4qxxspka9bhgq3rq8xraf48mwfv6phvz6v06gijh64lr"; depends=[dplyr jsonlite magrittr R6 r6extended stringr]; }; crov = derive2 { name="crov"; version="0.3.0"; sha256="1vnhnw6rw8qyhahy6d67cq5m9sxr6yic21qi16vic1q5115fwx01"; depends=[gtools VGAM]; }; crplyr = derive2 { name="crplyr"; version="0.4.0"; sha256="0l0vp2h4j2i5jb9wgdaqaixi9xvhb5n35zn8mdc7hyw13hjr8wa5"; depends=[crunch dplyr ggplot2 httptest lazyeval lifecycle purrr rlang scales stringr tibble tidyselect viridisLite]; }; - crqa = derive2 { name="crqa"; version="2.0.4"; sha256="1sr185afy81c8nb8bmn56ddv9xncrjpis49xp24395i508ay740x"; depends=[gplots Matrix plot3D pracma rdist tseriesChaos]; }; + crqa = derive2 { name="crqa"; version="2.0.5"; sha256="1nnnzixkv7hxdrhwdxa2ffp139cdzm4njdprh68fl6gv92ssqr6h"; depends=[gplots Matrix plot3D pracma rdist tseriesChaos]; }; crrSC = derive2 { name="crrSC"; version="1.1.2"; sha256="0n63k1v35wvbf565msr3fczi9hjd20bqh8b4iyvzp310d8z8b3g8"; depends=[survival]; }; crrcbcv = derive2 { name="crrcbcv"; version="1.0"; sha256="1rbmhnr7n99i0277d47i62ww6896z1g20v6vr558zmx3gvrs0b6k"; depends=[abind crrSC pracma survival]; }; crrstep = derive2 { name="crrstep"; version="2023.1.1"; sha256="0x4fvsvcxb529c7vp5fh6vp7l0sj1wszpqzbrk1da7kmf5454ki6"; depends=[cmprsk]; }; @@ -8130,10 +8270,13 @@ in with self; { crwbmetareg = derive2 { name="crwbmetareg"; version="1.0"; sha256="0faksz2hp1ya4j9hlpc091b1mgwz6396fc15f4f20fixcidv1jg8"; depends=[lmtest Rfast2 sandwich]; }; cry = derive2 { name="cry"; version="0.5.1"; sha256="0n1yyjkqj0kqs53g27chl7lhk07f7aj81jwyvaxfmfkp03xzjj0d"; depends=[ggplot2 zoo]; }; crypto2 = derive2 { name="crypto2"; version="1.4.5"; sha256="0j4n13c9qcm1f6fwbvr72pqdvfvxrhnakk19dpn2hlxfdmmsk79g"; depends=[cli dplyr jsonlite lubridate plyr progress purrr tibble tidyr]; }; + cryptoQuotes = derive2 { name="cryptoQuotes"; version="1.2.1"; sha256="1150dy8qllm4qsficj9p1mzmqsgkw6m824yyykv784s8ikghlvj6"; depends=[cli curl httr2 lifecycle magrittr plotly RColorBrewer rlang TTR xts zoo]; }; cryptography = derive2 { name="cryptography"; version="1.0.0"; sha256="0dwnm37p95i1rmrc9qq7ryz1rk96n01ik3xif1f94vz5dlm4kxd7"; depends=[DescTools]; }; + cryptotrackr = derive2 { name="cryptotrackr"; version="1.1.0"; sha256="1n7af1d9c0nw3v6s38yj782y9gbbzq1d8w8mrcvhjglzgcs50abd"; depends=[digest httr jsonlite openssl stringi]; }; cryptoverse = derive2 { name="cryptoverse"; version="0.1.0"; sha256="169afkvinngwhrxi50a4r07lhgb6x9dxjbi3bj0gc7iyxa8cl9c5"; depends=[]; }; cryptowatchR = derive2 { name="cryptowatchR"; version="0.2.0"; sha256="0lf94l5klkx1j1fgaq2qjqr2y8ckm5raa3a508x72ph45v10pfyq"; depends=[httr jsonlite lubridate]; }; cryst = derive2 { name="cryst"; version="0.1.0"; sha256="04da19dy3mkngd3ma44cd8cdkb5acjy9lbhfipa9flp339j1pp57"; depends=[flux pracma]; }; + csa = derive2 { name="csa"; version="0.7.1"; sha256="1mjvyl1l80xxyj1nafjgl6jhclyahybi47zxcrkpb78ldiwsf1hl"; depends=[data_table doParallel foreach ggplot2 ggpubr Lmoments moments raster reshape2 scales]; }; csalert = derive2 { name="csalert"; version="2023.6.17"; sha256="004rsqf912f9ladp9kvx26fhmkna61cxlgjfzmlxzirm1h2iw1vs"; depends=[cstidy cstime data_table ggplot2 glm2 magrittr stringr]; }; csampling = derive2 { name="csampling"; version="1.2-2.1"; sha256="0kqx7j96yafsqi9cz551fqpwkbcabxl8zpwa2jms862z41xbgsv3"; depends=[marg statmod survival]; }; csci = derive2 { name="csci"; version="0.9.3"; sha256="00s1gx5h141w1vjw8j3k7bn71c4dy80m6wakd1c1z7rmx1jbfp6m"; depends=[exactci]; }; @@ -8145,7 +8288,7 @@ in with self; { cspec = derive2 { name="cspec"; version="0.1.2"; sha256="049vynbffxyd5zwxwyz1jv05zgq7zrx1ypzv5j62ph64gl42m13p"; depends=[]; }; cspp = derive2 { name="cspp"; version="0.3.3"; sha256="1x3swcgqffqcpw4w6dwafqh9cikd6c714lbbnzwirvqvfswnmmgw"; depends=[csppData dplyr ggcorrplot ggplot2 haven mapproj purrr readr rlang stringr tidyselect]; }; csppData = derive2 { name="csppData"; version="0.2.61"; sha256="1q9a11v512dc96lrrd03w06s8x6c1a0j4z5x8qvq48f4q7k30l1r"; depends=[]; }; - csranks = derive2 { name="csranks"; version="1.2.0"; sha256="1h6g3rn1jv5gdjcbwq7kh2l41b4rdvkb1rf84ikz6ii5r35r30w6"; depends=[cli ggplot2 MASS scales]; }; + csranks = derive2 { name="csranks"; version="1.2.1"; sha256="142kni1c0yfinwjwd9s6lfihwy9s1ss85nqgmkblm7b859l7bmls"; depends=[cli ggplot2 lifecycle MASS scales]; }; cssTools = derive2 { name="cssTools"; version="1.0"; sha256="1p8c21c1hilmd9ibqyz493fy1x95hb2pidybsyicch53gkb542br"; depends=[sna]; }; cstab = derive2 { name="cstab"; version="0.2-2"; sha256="1lr401fvi88f4jv8jh4brx95ymncfw8clripz1r6a46inj80nj4j"; depends=[cluster fastcluster Rcpp]; }; cstidy = derive2 { name="cstidy"; version="2023.5.24"; sha256="01i5b1x6xfg8fbkhaam22ap64x6bqman5b5y57f07wiy413m65j2"; depends=[crayon csdata cstime data_table digest ggplot2 magrittr stringr]; }; @@ -8153,7 +8296,7 @@ in with self; { csurvey = derive2 { name="csurvey"; version="1.9"; sha256="0g41mh332imf03xwxpa3ghmi8dmdpva8wb1z794as3gp5hjddsh5"; depends=[cgam coneproj igraph MASS Matrix purrr survey]; }; csutil = derive2 { name="csutil"; version="2023.4.25"; sha256="0yh72ddymkqi46xqjvmgqkvn2a5bl3qyrrr37w0mvdx89zr95yxn"; depends=[data_table ggplot2 magrittr]; }; csv = derive2 { name="csv"; version="0.6.2"; sha256="1mynaia16jm28qi597xg7kf4w85vsxg5p83xbcbbr9di49vxqlr8"; depends=[data_table stringi]; }; - csvread = derive2 { name="csvread"; version="1.2.1"; sha256="1r9jvf7nbkxgl6dycdnb89yh39vacrzy8z04g8qz225rklg5b288"; depends=[]; }; + csvread = derive2 { name="csvread"; version="1.2.2"; sha256="0cbsdlrbdgq039cyr42isqbg8w65dpia1rdwbfppnv2x0f6x0fwr"; depends=[]; }; csvwr = derive2 { name="csvwr"; version="0.1.7"; sha256="1yh330kh1q06f2vn8jvgirz4q7wld1ylnkjpnjh17nqq0d2lsmk2"; depends=[cli jsonlite magrittr purrr readr rlang stringr]; }; csvy = derive2 { name="csvy"; version="0.3.0"; sha256="0id015szw1c63vd1h0515jsqdhyn32sxpxm89f3sb1qkgq3yynmy"; depends=[data_table jsonlite yaml]; }; cta = derive2 { name="cta"; version="1.3.0"; sha256="1i8psw6p6f4633ad17apm6v5ikrpv1dagm0s8pggpsjbbw8d655v"; depends=[intervals limSolve numDeriv]; }; @@ -8161,9 +8304,9 @@ in with self; { ctf = derive2 { name="ctf"; version="0.1.0"; sha256="1vwqfh1y2if79rkpy6b0ay50fyis7h5rlpvhgikahnmcr2q5l14m"; depends=[iotools jsonlite]; }; ctgdist = derive2 { name="ctgdist"; version="0.1.0"; sha256="1m3ryppfvd984n5xfphjqhi9i1sigl17v897mqaichj21dzaq62f"; depends=[mirt]; }; ctgt = derive2 { name="ctgt"; version="2.0"; sha256="0g2ibk9pxay0idj55q0yh4vbdb6l6460r997fnapimn7fgyz6f66"; depends=[BH Rcpp]; }; - cthist = derive2 { name="cthist"; version="2.1.0"; sha256="12z24kw3m203vjswbq63kqx0jbpy3scyvc158kd0x4w083r466f8"; depends=[assertthat dplyr httr jsonlite magrittr readr rlang stringr tibble]; }; + cthist = derive2 { name="cthist"; version="2.1.6"; sha256="0dn1mghic22s04lg79v9kinxfpd40lsigkda9x6i2bv0wgvwsy06"; depends=[assertthat dplyr httr jsonlite magrittr readr rlang stringr tibble]; }; cthreshER = derive2 { name="cthreshER"; version="1.1.0"; sha256="18b66d08dq8pvnixmm4ir4r800b37z5yillaa88l317mdilbci9s"; depends=[Matrix]; }; - ctl = derive2 { name="ctl"; version="1.0.0-8"; sha256="0af53da5m469mm7pmy1nr3zxcjjg9wrs01scc042nr5rnysjy4l4"; depends=[MASS qtl]; }; + ctl = derive2 { name="ctl"; version="1.0.0-9"; sha256="0czkdyf9d4nwkm23sq3kw4n1q07r6zlf6pd4vp09a64lw3kx8viz"; depends=[MASS qtl]; }; ctmcd = derive2 { name="ctmcd"; version="1.4.3"; sha256="1xlhy816qcidkhpybkfmi2a59x5aajhh2407ninnnimlxk45kilh"; depends=[coda expm numDeriv Rcpp RcppArmadillo]; }; ctmcmove = derive2 { name="ctmcmove"; version="1.2.9"; sha256="1pxyxbbhfa8arqfb7qw10ya1b8hy9ylqbqqzys6d9dsixvdk98h0"; depends=[fda gdistance Matrix raster sp]; }; ctmle = derive2 { name="ctmle"; version="0.1.2"; sha256="0qc1ji8fjpr88dn6mrpijfcx1ij4zkrxsbcw405hxal7rli0gyp3"; depends=[glmnet SuperLearner tmle]; }; @@ -8171,15 +8314,15 @@ in with self; { ctmva = derive2 { name="ctmva"; version="1.3.0"; sha256="197r3rjiqchpfxip0706q8rp7dbgfni7gh19g2k54bf7k3lc7y0p"; depends=[fda polynom]; }; ctpm = derive2 { name="ctpm"; version="1.0.1"; sha256="1bycdh3mbimmfvv3yb50c8rwcmkbjj0jwnfiynsp2h56y3dmzc1r"; depends=[ape ClusterR ctmm slouch]; }; ctqr = derive2 { name="ctqr"; version="2.0"; sha256="0srrlgqxpp4a46wqr83zpb3xr49pf70b0n8bv9qp8ffak20d2hpj"; depends=[pch survival]; }; - ctrdata = derive2 { name="ctrdata"; version="1.15.2"; sha256="0rqsz9wq4w0w2q0vha3dh7rwr3mnhp2gc1xb8hi30qk85zghjzml"; depends=[clipr curl dplyr httr jqr jsonlite lubridate nodbi stringi tibble xml2]; }; + ctrdata = derive2 { name="ctrdata"; version="1.16.0"; sha256="13n5c7znlxkwqlv04vd5ynbkbq8f28dzbr3y66966971xnf7yhsm"; depends=[clipr curl dplyr httr jqr jsonlite lubridate nodbi readr stringi tibble V8 xml2 zip]; }; ctrialsgov = derive2 { name="ctrialsgov"; version="0.2.5"; sha256="0hdh1fdfaja8amf7fkvk1c6yif703132bvacq0j9pk5jr97czgpw"; depends=[DBI dplyr ggplot2 htmlwidgets lubridate Matrix plotly purrr rlang stringi tibble]; }; ctrlGene = derive2 { name="ctrlGene"; version="1.0.1"; sha256="0x7j11v7jj4k1jml6lrnjq79awhrvsm3pig1yxsd337jlfml3ra9"; depends=[psych]; }; - ctsem = derive2 { name="ctsem"; version="3.9.0"; sha256="1622b1mgf0dxp53n1957y00hdbwic3mvixb213270sh59k21bzfl"; depends=[BH cOde data_table Deriv expm ggplot2 MASS Matrix mize mvtnorm plyr Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders tibble]; }; - ctsemOMX = derive2 { name="ctsemOMX"; version="1.0.5"; sha256="0fshc00q0fyybl6kybpf57wn898c8v1d7k0x3n8avsyrkg6addhx"; depends=[ctsem Matrix OpenMx plyr]; }; - ctsfeatures = derive2 { name="ctsfeatures"; version="1.0.0"; sha256="0jplrnbgvrc1650qasp8r5r319fdwrl24p2607yl0k45xjn82rq6"; depends=[astsa Bolstad2 ggplot2 latex2exp Rdpack]; }; + ctsem = derive2 { name="ctsem"; version="3.9.1"; sha256="1npdxd4z8vafjcjhy1i16r27wqmilc7b42hml21cggl9ynvh7pn7"; depends=[BH cOde data_table Deriv expm ggplot2 MASS Matrix mize mvtnorm plyr Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders tibble]; }; + ctsemOMX = derive2 { name="ctsemOMX"; version="1.0.6"; sha256="1vr7zpxfhwzj8v54dzgk42hvjb4433y9r8al9069prkrvlv74gx8"; depends=[ctsem Matrix OpenMx plyr]; }; + ctsfeatures = derive2 { name="ctsfeatures"; version="1.1.0"; sha256="0ws1s5qssk2kgr2n6da6ix49s3p068spl4c6x8pfdqkhfbanz5z8"; depends=[astsa Bolstad2 ggplot2 latex2exp Rdpack]; }; ctv = derive2 { name="ctv"; version="0.9-5"; sha256="1mr37p7mdv2p8rswz9clwj25ipm16pc4a7flwg3a4bgyj1n5mz55"; depends=[]; }; cuRe = derive2 { name="cuRe"; version="1.1.1"; sha256="0h8vblhfydrama01yzfghcv5yw5ifs719rvq17sixkgj5iyaj910"; depends=[date numDeriv relsurv reshape2 rstpm2 statmod survival]; }; - cubar = derive2 { name="cubar"; version="0.4.0"; sha256="03hc2ajmqpxbmrfqpr5rw5pyv0rdhsabwam15260w9mq5kmadg6g"; depends=[Biostrings data_table ggplot2 IRanges rlang]; }; + cubar = derive2 { name="cubar"; version="0.5.0"; sha256="12rqg50v7f0akd5d698lmf0vg1gg84lx9wjv7wvfikbyhpqk9wq6"; depends=[Biostrings data_table ggplot2 IRanges rlang]; }; cubature = derive2 { name="cubature"; version="2.1.0"; sha256="0r9n4xpm3ssjn3vywzlgh3naynzp1cxvjsd0pvah04k115b7i0jx"; depends=[Rcpp]; }; cubble = derive2 { name="cubble"; version="0.3.0"; sha256="0jjdz7yi58h2rvwbanzq4nq9lrbx4dcb03l1qlfkbqamn4s4hz5v"; depends=[cli dplyr ggplot2 glue lubridate ncdf4 rlang sf stringr tibble tidyr tidyselect tsibble vctrs]; }; cubelyr = derive2 { name="cubelyr"; version="1.0.2"; sha256="154vwf5pj2jh66wqdh78nc0v722b4rh88hss24g5lc31wlghzc8q"; depends=[dplyr glue pillar purrr rlang tibble tidyselect]; }; @@ -8195,18 +8338,19 @@ in with self; { cumulocityr = derive2 { name="cumulocityr"; version="0.1.0"; sha256="0ybvh5args3s1f3nra58bnfwgrlrdpw40by68az84s90v88bbz2q"; depends=[httr jsonlite]; }; cuperdec = derive2 { name="cuperdec"; version="1.1.0"; sha256="1vvkbkb3dp38xzxxdm20n6vr8yifppn1clzzcvb2rhqk9d17cdiw"; depends=[dplyr ggplot2 magrittr readr rlang tidyr]; }; curephEM = derive2 { name="curephEM"; version="0.2.5"; sha256="1s0wrjzkp8wn8k0p5k9m7ljh104ay50izsyyvgb9qlb9yaggv1iz"; depends=[Matrix survival]; }; - cureplots = derive2 { name="cureplots"; version="1.0.0"; sha256="0qm0b508ywv65c52jwh7w6v57dv2pc3r2gh4ycwmmw73zkfglndp"; depends=[dplyr ggplot2 glue]; }; - curl = derive2 { name="curl"; version="5.1.0"; sha256="15xsxirb5k4pqc8v5kg0i3v1pnhy4wzcljxagp703gc59fl8s8ap"; depends=[]; }; + cureplots = derive2 { name="cureplots"; version="1.1.0"; sha256="1ikjx4bhazqba9p9sd375mrn0321cwb84d7pj7kk1my6grkd123y"; depends=[dplyr ggplot2 glue]; }; + curl = derive2 { name="curl"; version="5.2.0"; sha256="12gldddkfkdwm6h0lb1pjrcpqc9kmqwfwz18wn9brilzbw8s9nxz"; depends=[]; }; currencyapi = derive2 { name="currencyapi"; version="0.1.0"; sha256="1d21nsmnzd89j86rlhicplj6ryp9mvs2jky8p55jc33zn48sywb6"; depends=[httr jsonlite]; }; currentSurvival = derive2 { name="currentSurvival"; version="1.1"; sha256="01rlm4n3qfa71wkd6pbkdhcgll0y13zrcbjqxy0gssvrgnwwcfsx"; depends=[cmprsk survival]; }; currr = derive2 { name="currr"; version="0.1.2"; sha256="0dfcgnv71cwzsglg725qsf3vg54yar3ps4f9njwa9183k1gypvqp"; depends=[broom clisymbols crayon dplyr job pacman purrr readr rstudioapi scales stringr tibble tidyr]; }; curry = derive2 { name="curry"; version="0.1.1"; sha256="1ps9hvbnb02m0b8hlw4admwbziyjvswj08ldi2dk3ymnrpawcc29"; depends=[]; }; cursr = derive2 { name="cursr"; version="0.1.0"; sha256="08051bnxags2arn296mxwc84j55shhsfym9hd062amdvm23nxd18"; depends=[keypress]; }; curstatCI = derive2 { name="curstatCI"; version="0.1.1"; sha256="0igqdv0fzzji10gz3j3ir8qxpy7vdjfl137067rc28qzbrl2sy2c"; depends=[Rcpp]; }; - curtailment = derive2 { name="curtailment"; version="0.2.0"; sha256="1pk3vx9lbmvc1sj9n4n9vgbpx3xj71by0pl82ii10g69qwfllmph"; depends=[data_table ggplot2 ggthemes gridExtra pkgcond]; }; + curtailment = derive2 { name="curtailment"; version="0.2.6"; sha256="0fdm619c7v0rik603hf44alw5lfr7fjphm5lady4cq21vwdakyac"; depends=[data_table ggplot2 ggthemes gridExtra pkgcond]; }; curvHDR = derive2 { name="curvHDR"; version="1.2-2"; sha256="05i4q6lrzm23nvs5wkxxpa9c4ldz3khgsk5sw3cgzdzn3cm6a0xf"; depends=[feature geometry hdrcde KernSmooth ks misc3d ptinpoly rgl]; }; curveDepth = derive2 { name="curveDepth"; version="0.1.0.9"; sha256="10mhy2nyll4d1q71qnlsal0raccz3awd0j0vi5w58di9wlv1c241"; depends=[ddalpha Rcpp RcppArmadillo]; }; curvecomp = derive2 { name="curvecomp"; version="0.1.0"; sha256="0ykgbwnh32w61cjcg1nyqak42hx0jrsrpbra2wh3pgj9clg1qad2"; depends=[multcomp]; }; + curvir = derive2 { name="curvir"; version="0.1.1"; sha256="132cqsya612k8mhrhwl0133nhj30p0fa43q819s7cq0rnwhnna64"; depends=[abind cvTools mgcv pbapply pso qgam quantregForest randomForest RColorBrewer]; }; cusp = derive2 { name="cusp"; version="2.3.6"; sha256="0rpljddawrbq2q04fc426s57wbl3adp6mfkdv8bpjkfcyq2swbdh"; depends=[]; }; custom_gauss_quad = derive2 { name="custom.gauss.quad"; version="1.0.0"; sha256="1rpg3wrpvmn24a8kmm3mwyqmrcx2pxhhrf40wp31nv8jfy7cfm7c"; depends=[Rmpfr]; }; customizedTraining = derive2 { name="customizedTraining"; version="1.2"; sha256="0kjp22bzv7a3xynhm9xmabfcms21586p8caz1nk1w88qdvidqfqd"; depends=[FNN glmnet]; }; @@ -8214,6 +8358,7 @@ in with self; { cusumcharter = derive2 { name="cusumcharter"; version="0.1.0"; sha256="0ljprnn48nfl8n0zmvc547rcg4cwrfhq3zjkkimgdnf7z2d130q6"; depends=[data_table ggplot2 rlang]; }; cutoff = derive2 { name="cutoff"; version="1.3"; sha256="0anrvmlvcxah620il3fkq6ldp7hx4nwdnzcpmfc5mhlsry0lp178"; depends=[do ROCit set survival]; }; cutpointr = derive2 { name="cutpointr"; version="1.1.2"; sha256="1qxnh20hs3bh9v04ls7gwwl7lfc6bwl8c88dn8lkcdqyp3nyr01j"; depends=[dplyr foreach ggplot2 gridExtra purrr Rcpp rlang tibble tidyr tidyselect]; }; + cv = derive2 { name="cv"; version="1.0.1"; sha256="0jy7dp31j3kn053b5bcx3yha4g3rsia48ayxa6zlfgkspxh7i5fa"; depends=[car doParallel foreach insight lme4 MASS nlme]; }; cvAUC = derive2 { name="cvAUC"; version="1.1.4"; sha256="1m2y50a1yapf1c74km9a4r47ds2z2bfp4wwwkqin7swv9v1s7d28"; depends=[data_table ROCR]; }; cvCovEst = derive2 { name="cvCovEst"; version="1.2.1"; sha256="1kjv381g8g81x09cpy8dp1zxbh7q6vaxmgfb6i8cxz40nc2zq9rv"; depends=[assertthat coop dplyr ggplot2 ggpubr Matrix matrixStats origami purrr RColorBrewer Rdpack rlang RMTstat RSpectra stringr tibble]; }; cvGEE = derive2 { name="cvGEE"; version="0.3-0"; sha256="085qjm520l2441nakfxy851s6bfy5832b5fy54z5fp4xr1jn6snm"; depends=[]; }; @@ -8228,16 +8373,17 @@ in with self; { cvms = derive2 { name="cvms"; version="1.6.0"; sha256="02cxhvhf5bfxj3nmpl8911dzxrvfbbli5ix1qz31lx0h8spg83a4"; depends=[checkmate data_table dplyr ggplot2 groupdata2 lifecycle lme4 MuMIn parameters plyr pROC purrr rearrr recipes rlang stringr tibble tidyr]; }; cvsem = derive2 { name="cvsem"; version="1.0.0"; sha256="148v8axwxfr328l709b6q1fmqnzmiw9g7589zgwha4d6lrx4ak4i"; depends=[lavaan Rdpack]; }; cvwrapr = derive2 { name="cvwrapr"; version="1.0"; sha256="17h017p76y7sjcwik48ravygmyivj6kvkhqy5s9ch0nwzzcrzvj3"; depends=[foreach survival]; }; + cwbtools = derive2 { name="cwbtools"; version="0.3.9"; sha256="0hgkm90b7x8w4xn1ajq1bk5bh3jxmjvhs9zz7gsnvy06s78pl75m"; depends=[cli curl data_table fs httr jsonlite lifecycle pbapply R6 RcppCWB rstudioapi stringi xml2 zen4R]; }; cwot = derive2 { name="cwot"; version="0.1.0"; sha256="1qg9aizkz40sfm65b8sxcmj1232zb3ds8gds45lv0prf8alc7az3"; depends=[mvtnorm SPAtest]; }; - cxhull = derive2 { name="cxhull"; version="0.7.3"; sha256="0k68da3sa3bn17aj525m0axk9yqzi6i966z6h95d727phg865rld"; depends=[data_table Morpho rgl Rvcg]; }; - cxr = derive2 { name="cxr"; version="1.0.0"; sha256="12rx7hna3h84a2xb2ir43xgb3zfmh0fhn5wcdjklk2g94dmwid28"; depends=[mvtnorm optimx]; }; + cxhull = derive2 { name="cxhull"; version="0.7.4"; sha256="0jxr1fz7cyarcq50jkkc2f3f1zwmbljpdpl56hfcilb43z2rkzkj"; depends=[data_table rgl Rvcg]; }; + cxr = derive2 { name="cxr"; version="1.1.1"; sha256="197xbphvnhg05dwcs0p7iwg6j6bi223cxxqfvibx7yp2bnfsllm2"; depends=[Matrix mvtnorm optimx]; }; cxxfunplus = derive2 { name="cxxfunplus"; version="1.0.2"; sha256="125lzra4mr4cw5j18nck1faa6jf4fiw4m5pc9mp1h39268c9va6v"; depends=[inline]; }; cycleRtools = derive2 { name="cycleRtools"; version="1.1.1"; sha256="1l7w2lm4s149ndd85v41pkdrdig6l3nmhl14bdx56aw8q57fxmb0"; depends=[Rcpp xml2]; }; cyclestreets = derive2 { name="cyclestreets"; version="1.0.1"; sha256="0xrgwhlq670m109j27ln93zzq0wm8cfbkivd45v2rldxgvd50348"; depends=[checkmate curl data_table dplyr geojsonsf httr jsonlite magrittr progressr RcppSimdJson readr sf stringi stringr]; }; cyclocomp = derive2 { name="cyclocomp"; version="1.1.1"; sha256="0kdinnn6cgkfc94japyyp5qr7imjxddajds3qqxf4q5higahdzws"; depends=[callr crayon desc remotes withr]; }; cycloids = derive2 { name="cycloids"; version="1.0.2"; sha256="1smmqww84w94891p9q77f27zxkzy7a72h7y6imi9n9p84v0pakzz"; depends=[]; }; cyclomort = derive2 { name="cyclomort"; version="1.0.2"; sha256="0qmfwhrp7bq7av0yc95xnz2sd1jxfaiys9smrk1kpclnynnra9rr"; depends=[flexsurv lubridate magrittr mvtnorm plyr scales survival]; }; - cyclotomic = derive2 { name="cyclotomic"; version="1.2.0"; sha256="0n4xgfyjbnxqpy4w8x2gw8m3fg11klywlxn4v05lrhf7r4paggk0"; depends=[gmp intmap maybe memoise primes VeryLargeIntegers]; }; + cyclotomic = derive2 { name="cyclotomic"; version="1.3.0"; sha256="1r2z21d2fylifw39ascx73k4rlfa3b1zg2pdbm2j7hg7g7rsr8w5"; depends=[gmp intmap maybe memoise numbers VeryLargeIntegers]; }; cyjShiny = derive2 { name="cyjShiny"; version="1.0.42"; sha256="1p3ifmaxbw5g57pp4v8hnvq3fsy7frpny9jgp0q1b3klg3dhsjwj"; depends=[base64enc graph htmlwidgets jsonlite shiny]; }; cylcop = derive2 { name="cylcop"; version="0.2.0"; sha256="1kh1h7zmk2d2p81ih1xyf3rv1g9gpjrdwyj3j812kp0krz71km4n"; depends=[circular copula cowplot data_table dplyr ggplot2 GoFKernel infotheo MASS mixR movMF plotly purrr Rdpack rgl rlang stringr transport viridis]; }; cymruservices = derive2 { name="cymruservices"; version="0.5.0"; sha256="1xhdvijybdy7312qdbp50881yix587pmym0hchnwb3h0vhjv553v"; depends=[memoise pingr stringi]; }; @@ -8270,7 +8416,7 @@ in with self; { daarem = derive2 { name="daarem"; version="0.7"; sha256="1pm8nj4ffc18njpr87hb988j551zp0s6ysr37nk784ibk4awxf7x"; depends=[]; }; dabestr = derive2 { name="dabestr"; version="2023.9.12"; sha256="0fm6gk1q86nkls2y3zcklszqb570jcll9hfn2mpd4b4qj2vl2d4x"; depends=[boot brunnermunzel cli cowplot dplyr effsize ggbeeswarm ggplot2 ggsci magrittr rlang scales stringr tibble tidyr]; }; dabr = derive2 { name="dabr"; version="0.0.4"; sha256="14q8frsg8qk46yldawh58cjm4v10im4ar5r5f4yfdxf6jdaadfih"; depends=[knitr magrittr RMariaDB tibble]; }; - dacc = derive2 { name="dacc"; version="0.0-2"; sha256="0yybgmpi171xym36c94qlxv2m9gc0ywgcbq0l6qv7w2na7axfq6b"; depends=[Iso janitor magrittr MASS pracma]; }; + dacc = derive2 { name="dacc"; version="0.0-3"; sha256="1hd6n6411pb3r9s69b0b9b5a94cnbq6b098yj681bn737ldraj52"; depends=[Iso janitor magrittr MASS pracma]; }; dad = derive2 { name="dad"; version="4.1.2"; sha256="12jwfa1849mfjwplc57qw3lhn5zrqjrlxhisg9hykvhcpj6i0nfl"; depends=[DescTools e1071 ggplot2]; }; dadjoke = derive2 { name="dadjoke"; version="1.0"; sha256="118pacwc2qb3c5zbhr71zf4zj1ab2g4rs5h6bvrscjyd7a71jc3f"; depends=[]; }; dadjokeapi = derive2 { name="dadjokeapi"; version="1.0.2"; sha256="143xs3nkf6ynr83z5gggz318nvpnsbfmskl1ipavlzrqk785dlac"; depends=[beepr curl dplyr httr png]; }; @@ -8282,33 +8428,35 @@ in with self; { dafs = derive2 { name="dafs"; version="1.0-38"; sha256="0ljhpw2f4hbkqh6c6gwqwwdsa4kp5qvyphig5zcn6qrb9ryf3wh1"; depends=[s20x]; }; dagR = derive2 { name="dagR"; version="1.2.1"; sha256="16dx7gpbq61xwnk3769mf6nsynqb3zgjl6l0zcvh8j0cp1s35m82"; depends=[]; }; dagirlite = derive2 { name="dagirlite"; version="0.1.0"; sha256="12j5mfxcv32qgx1yklcq8yl2kx4lkxap4biywjrj0sjx6zj60f8l"; depends=[knitr Rdpack]; }; - dagitty = derive2 { name="dagitty"; version="0.3-1"; sha256="1a78g2nr8i7mzzxyb6mfsqqgjyf3s4hwngvyd9vyygzcb79bai3x"; depends=[boot jsonlite MASS V8]; }; + dagitty = derive2 { name="dagitty"; version="0.3-4"; sha256="10iw5ldra7ih3jpp1iaac6cbfgpl62bq09zl30c0z03mzhj18vvr"; depends=[boot jsonlite MASS V8]; }; dagwood = derive2 { name="dagwood"; version="0.1.4"; sha256="1lp6swfmfzv28cfybmvj7czkfljd0sldv2qqi83q0fwcb7kxgdfz"; depends=[dagitty]; }; daiR = derive2 { name="daiR"; version="0.9.9"; sha256="19rl58ns28wc3bwv8fs68zdcl59css9rwrfpfdjw4vay4dczfb6h"; depends=[base64enc beepr data_table fs gargle glue googleCloudStorageR httr jsonlite magick pdftools purrr readtext stringr xml2]; }; dail = derive2 { name="dail"; version="1.5.2"; sha256="0a82ch0l7ci9vjrwyy38qhw8zrp9d4h2bmk963llm9aqf4j7lkhf"; depends=[deflateBR dplyr janitor lubridate magrittr RCurl readr stopwords stringr tidytext]; }; daiquiri = derive2 { name="daiquiri"; version="1.1.1"; sha256="05057i8xvkzyd8h1ppw7qip1d4yjgzimmb5chbdw72mwwgbrwrfy"; depends=[cowplot data_table ggplot2 reactable readr rmarkdown scales xfun]; }; - daltoolbox = derive2 { name="daltoolbox"; version="1.0.717"; sha256="1fxkbd821pp7qriqj0c0q5njn3xyibf3b3npx8gsiv186ss17dms"; depends=[caret class cluster dbscan dplyr e1071 elmNNRcpp FNN forecast ggplot2 MLmetrics nnet randomForest reshape reticulate tree]; }; + daltoolbox = derive2 { name="daltoolbox"; version="1.0.727"; sha256="0ycbbqcdkk9yhwrrln5xh4j5xfsga4hcn0jc7fgczpjdgv07g8w8"; depends=[caret class cluster dbscan dplyr e1071 elmNNRcpp FNN forecast ggplot2 MLmetrics nnet randomForest reshape reticulate tree]; }; dam = derive2 { name="dam"; version="0.0.1"; sha256="1b0fi3l8jxgpr9fwvi03giq7wm39msbh0c82ffgkh54a3bbf5blc"; depends=[]; }; dampack = derive2 { name="dampack"; version="1.0.1"; sha256="0mh3x0xgcipbd9341x3sfapysrd9m8aaakc1f53vwjj31c8vayqc"; depends=[dplyr ellipse ggplot2 ggrepel mgcv reshape2 scales stringr triangle truncnorm]; }; damr = derive2 { name="damr"; version="0.3.7"; sha256="12vr630m2az8xb8wndk8cyh7r8mwg3lvr7i3fcgqqxcq9rsgqm4r"; depends=[behavr data_table readr]; }; dams = derive2 { name="dams"; version="0.3.0"; sha256="1jlx1b4cir1vwq75jnmk0pc6j95syfpi0hlnkx82g7pwfxwrdrib"; depends=[crul fauxpas janitor readxl]; }; - dang = derive2 { name="dang"; version="0.0.15"; sha256="0zy72rlviisjb3syvj2fq9zliwk02m33kjd7h9q7n3xq3876bi4w"; depends=[tidyCpp]; }; + dang = derive2 { name="dang"; version="0.0.16"; sha256="1h0j2pxwp8dnaw2vrclj069xmd6adwah8ld4vmmh3zm7kwflvcx8"; depends=[tidyCpp]; }; dani = derive2 { name="dani"; version="0.1-1"; sha256="0ff0hcb5r8k6m6kv1zhjrpvl7gr1al3q0zlk4yjj89qd2j5byqp8"; depends=[Epi]; }; dann = derive2 { name="dann"; version="1.0.0"; sha256="0hmmkzv3cq0yl8kgcj08557zx086ablh6ngmyxhb1chig7kmmb4x"; depends=[ellipsis fpc ggplot2 hardhat MASS purrr Rcpp RcppArmadillo rlang stringr tibble]; }; danstat = derive2 { name="danstat"; version="0.2.0"; sha256="16b0dl41g56s6iyxndpl403wgqqj1l3g9k78y3ciq5djq3a25m97"; depends=[httr jsonlite readr]; }; - dapr = derive2 { name="dapr"; version="0.0.3"; sha256="136chxijyxrl5sbiggxf56zga26zqds647z1z2igwn5mdff1wxyb"; depends=[]; }; daqapo = derive2 { name="daqapo"; version="0.3.2"; sha256="1c00ppsqzjmrw16zdifkcigi4ll2nd2hlhj17lydmin0djg5cpby"; depends=[bupaR dplyr edeaR glue lubridate magrittr miniUI purrr readr rlang shiny stringdist stringr tibble tidyr xesreadR]; }; darksky = derive2 { name="darksky"; version="1.3.0"; sha256="1740cw5qifgvqa0nafd6lmllxi32n1zm45zlify1yn3h1qdcszhb"; depends=[ggplot2 gridExtra gtable httr plyr]; }; dartR = derive2 { name="dartR"; version="2.9.7"; sha256="1wwm2gq743l90jsa1hsgxknqxqp0ga8vf3xv652m3ifpyrkp93vx"; depends=[adegenet ape crayon dartR_data data_table dplyr fields foreach ggplot2 gridExtra MASS patchwork plyr PopGenReport raster reshape2 shiny SNPRelate sp StAMPP stringr tidyr vegan]; }; - dartR_base = derive2 { name="dartR.base"; version="0.49"; sha256="1jyfwxrr4vcpac277wii11md7rpv5nxcz7g1g6ardj29a690r2vh"; depends=[adegenet ape crayon dartR_data data_table dplyr foreach ggplot2 gridExtra patchwork plyr reshape2 SNPRelate StAMPP stringr tidyr]; }; + dartR_base = derive2 { name="dartR.base"; version="0.65"; sha256="1887ksyszlp65i4z6zhh6j1pihfkkimiwrv6bqav5z7gmw2i0pi7"; depends=[adegenet ape crayon dartR_data data_table dplyr foreach ggplot2 gridExtra MASS patchwork plyr reshape2 SNPRelate StAMPP stringr tidyr]; }; + dartR_captive = derive2 { name="dartR.captive"; version="0.75"; sha256="1n6qhn87111ydznmy85lj7sbxkkak4nwiq1kyky3p43x9679b2p9"; depends=[adegenet crayon dartR_base dartR_data ggplot2 patchwork stringr]; }; dartR_data = derive2 { name="dartR.data"; version="1.0.2"; sha256="0gi6hgvfvh1hp60fvmij2r4fgv1qigs2biw2hw05rbl55xv93ni5"; depends=[adegenet]; }; - dartR_spatial = derive2 { name="dartR.spatial"; version="0.76"; sha256="0m65y04h9lljpv4g5y0vnzd70pqmzdw538qb7kwksv41lkxlqnvf"; depends=[adegenet crayon dartR_base dartR_data data_table ggplot2 MASS raster sp StAMPP tidyr vegan]; }; - dartRverse = derive2 { name="dartRverse"; version="0.49"; sha256="0s0apsz8zjrjz9lgb2xwn5zhh38iha6lif109hzwpmsddbckp3y0"; depends=[cli dartR_base dartR_data rlang]; }; + dartR_popgen = derive2 { name="dartR.popgen"; version="0.32"; sha256="1sr9dd6nyspcv0lvj42qa1wpnichjxq1nqp6rl0i6f6jz00fm5mv"; depends=[adegenet crayon dartR_base dartR_data data_table dplyr ggplot2 MASS patchwork stringr]; }; + dartR_sim = derive2 { name="dartR.sim"; version="0.70"; sha256="02l18hvdd1hr9l15frvaw7nikjmr7iyq3wvg5xz8drma4v9r9lwb"; depends=[adegenet dartR_base dartR_data data_table fields ggplot2 hierfstat Rcpp reshape2 shiny shinyBS shinyjs shinythemes shinyWidgets stringi stringr]; }; + dartR_spatial = derive2 { name="dartR.spatial"; version="0.78"; sha256="1fjajinsc2ikvhz4igjyldvfd5skdqhnay5209dzx4xjpnkik5vv"; depends=[adegenet crayon dartR_base dartR_data data_table ggplot2 MASS raster sp StAMPP tidyr vegan]; }; + dartRverse = derive2 { name="dartRverse"; version="0.51"; sha256="1j5fgr5priyh9w4ysnx8104yvhq4kysp0i07phqjn2yyj0pk8a15"; depends=[cli dartR_base dartR_data rlang]; }; dashboardthemes = derive2 { name="dashboardthemes"; version="1.1.6"; sha256="0yki4gmklrkhs6ldznabdr04smw3a112ask313z1h93dnvabr06c"; depends=[htmltools]; }; dat = derive2 { name="dat"; version="0.5.0"; sha256="1d3q4bang6pm06rfzh6h947xy3wwqn3l6ri0h4hzklg5pzwpsajd"; depends=[aoos data_table Formula magrittr progress]; }; - data_table = derive2 { name="data.table"; version="1.14.8"; sha256="1z9rf5anjvg3bmbbajb12nf65jsxdw35ad9piysrp76zcx9wxchl"; depends=[]; }; - data_tree = derive2 { name="data.tree"; version="1.0.0"; sha256="0pizmx2312zsym4m42b97q2184bg3hibvbdrblcga05xln84qrs0"; depends=[R6 stringi]; }; - data_validator = derive2 { name="data.validator"; version="0.2.0"; sha256="0v6blwkaxb87n2zdvfwa9fjil4mablch9gsdxa6sbsryx5s373yw"; depends=[assertr dplyr htmltools htmlwidgets knitr purrr R6 rlang rmarkdown shiny_semantic tibble tidyr]; }; + data_table = derive2 { name="data.table"; version="1.14.10"; sha256="0zk2g0lnjrw5wk6avwq07xw0cd7hpcpkmamf9d8avpd8f7ml2jq1"; depends=[]; }; + data_tree = derive2 { name="data.tree"; version="1.1.0"; sha256="0qxd1g159phc6f18iddjljdg96sh09w63xqawjwbwyhg4blm9ddh"; depends=[R6 stringi]; }; + data_validator = derive2 { name="data.validator"; version="0.2.1"; sha256="118crpyyp2szj0l3rsqmzi1cpcv45lwlvczp25f28z1lgcx6mgcx"; depends=[assertr dplyr htmltools htmlwidgets knitr purrr R6 rlang rmarkdown shiny_semantic tibble tidyr]; }; data360r = derive2 { name="data360r"; version="1.0.9"; sha256="15934ixmzw3iyqazhlz6s5cimmasf062fc8al0wdyij1f4cjcgny"; depends=[data_table jsonlite reshape2]; }; dataCompareR = derive2 { name="dataCompareR"; version="0.1.4"; sha256="1rapnlbi43z4sx4rq3fp8kpqhdj4g02fi3xglldbdp0c59f9vacg"; depends=[dplyr knitr markdown stringi]; }; dataMaid = derive2 { name="dataMaid"; version="1.4.1"; sha256="06jywq3llwafjnpklqimra456crdi752zxci6z1w0v7p8blf4vjw"; depends=[ggplot2 gridExtra haven htmltools magrittr pander rmarkdown robustbase stringi whoami]; }; @@ -8318,18 +8466,18 @@ in with self; { dataReporter = derive2 { name="dataReporter"; version="1.0.2"; sha256="1rjm6j1s229j1j9yb5y1sdi03x22qzrkmhc09k4xdmwmwmpi3s58"; depends=[ggplot2 gridExtra haven htmltools magrittr pander rmarkdown robustbase stringi whoami]; }; dataRetrieval = derive2 { name="dataRetrieval"; version="2.7.14"; sha256="0wk939w72ndfb9v1bkcc229hdk2l6q4yxjzxii5zdkvmwgm1rmfc"; depends=[curl httr jsonlite lubridate readr xml2]; }; dataSDA = derive2 { name="dataSDA"; version="0.1.0"; sha256="0nf7ssk8srpmq0b2bqzm6kilj3m3dhdk7fz35vhzzkj4d2wn9czr"; depends=[magrittr tidyr]; }; + databraryr = derive2 { name="databraryr"; version="0.5.1"; sha256="0jnnwzhbyy1mm5mmqdr36p4v4sd16m1g7p4nckffmai2fb70yjgf"; depends=[assertthat dplyr getPass httr jsonlite keyring lifecycle magick plyr purrr rvest stringr tibble tidyr]; }; dataclass = derive2 { name="dataclass"; version="0.3.0"; sha256="1byjxwk3jlm3jaa8q2ppr5i0y98hriky7rrff9gb8nk6yvv9jgmq"; depends=[cli dplyr glue magrittr purrr rlang tibble]; }; datacleanr = derive2 { name="datacleanr"; version="1.0.3"; sha256="0mrfqm3lgb6sl2j35sfd00gb5121j9wmlff8k0vczr3sgmqz4dg8"; depends=[bslib clipr dplyr DT formatR fs glue htmltools htmlwidgets lubridate magrittr plotly purrr RColorBrewer rlang rstudioapi shiny shinyFiles shinyWidgets summarytools]; }; datacutr = derive2 { name="datacutr"; version="0.1.0"; sha256="1qgmc2r1g5zlvfq84qrmmfp6dv3458zhv741aa5wf1nkw2sv656y"; depends=[admiraldev assertthat dplyr lubridate magrittr purrr rlang stringr tibble]; }; datadictionary = derive2 { name="datadictionary"; version="1.0.0"; sha256="102ll25mi4ac1zkvvirk7k11hqpf9q9h2if1rkz93zlfms843hp7"; depends=[chron data_table dplyr haven labelled lubridate magrittr openxlsx tibble tidyr tidyselect]; }; datadogr = derive2 { name="datadogr"; version="0.1.2"; sha256="10zbxb9gkymw78ras9y4wrifz7cxh3y630yzjcf9ds2p557vcjzp"; depends=[anytime dplyr glue httr lubridate purrr stringr tibble tidyr]; }; dataframeexplorer = derive2 { name="dataframeexplorer"; version="1.0.2"; sha256="0g5ajvd81k5pamvn204rxaiw92k20qqffnia1g6z89lp73spxs0s"; depends=[data_table dplyr magrittr openxlsx plyr stringr tibble tidyr]; }; - dataframes2xls = derive2 { name="dataframes2xls"; version="0.4.7"; sha256="10krlv0l5w021z0qd7rj93pzfjjmcjlda4xz4vq470bxbjmn1bss"; depends=[]; }; datafsm = derive2 { name="datafsm"; version="0.2.4"; sha256="0klhkbwpaqxk2mnxha8b03mpgfxk107ff9d2nx6cky59il3c1825"; depends=[caret GA Rcpp]; }; datagovsgR = derive2 { name="datagovsgR"; version="1.0.0"; sha256="1vi3pql1k563ggvqr0d673z2aspvqi1w384lslinnsq85cwcfcly"; depends=[data_table dplyr httr purrr stringr]; }; datamods = derive2 { name="datamods"; version="1.4.2"; sha256="1qzzzv1hgyj1kgpjxfpblbw4yb3d3sxicmgrijnl90k6jdakg887"; depends=[data_table htmltools htmlwidgets phosphoricons reactable readxl rio rlang shiny shinybusy shinyWidgets tibble writexl]; }; datana = derive2 { name="datana"; version="1.0.3"; sha256="0vci2nhavqrpah4n5gr0rhihlp9qa41mfgg8w2k7fdak65hdz3hq"; depends=[ggplot2 lattice]; }; - datanugget = derive2 { name="datanugget"; version="1.2.1"; sha256="1zvhbkpc1akzdfaz7jzgfmb287s88b8a5icgqkaq5zvlik6drw0q"; depends=[doSNOW foreach]; }; + datanugget = derive2 { name="datanugget"; version="1.2.4"; sha256="0r75vc6fzafv2kwq228w9iw0ryhwmly839dhcgf8bqgxyzd9gs16"; depends=[doSNOW foreach Rfast]; }; dataonderivatives = derive2 { name="dataonderivatives"; version="0.4.0"; sha256="0bp1ynarz70c2clsz60dqfd4vmgm3251jv6821db5n7fffdrr7qa"; depends=[httr2 readr tibble vetr]; }; dataone = derive2 { name="dataone"; version="2.2.2"; sha256="0509dmvf3kgk15cjbz3m9fzanbdpa5r0rz921m776a4bsjsilv4i"; depends=[base64enc datapack httr jsonlite parsedate plyr stringi stringr uuid XML]; }; datapack = derive2 { name="datapack"; version="1.4.1"; sha256="14vlcgk5sckzkc15cjvrbs113y65rqlwm1az7nsvnsqfx4x76jb1"; depends=[digest fs redland uuid XML zip]; }; @@ -8339,35 +8487,36 @@ in with self; { datardis = derive2 { name="datardis"; version="0.0.4"; sha256="0zcgl4jyz0xphliwjg8x5hqg9avflk0s5mgxd7gl52pxrki4mak3"; depends=[dplyr]; }; dataresqc = derive2 { name="dataresqc"; version="1.1.1"; sha256="1a4izp25bxvgq3l4m7njy13d3fl6xn8y7v2v18raqk5g8kl8ca2y"; depends=[]; }; datarium = derive2 { name="datarium"; version="0.1.0"; sha256="1v98yxsxhfqlalz5qy3x5axb7fy067vf3y0qg7ngixphmy9qybym"; depends=[]; }; - datarobot = derive2 { name="datarobot"; version="2.18.4"; sha256="015hb7srndwgl0wxw5601hjqyy2hy9dm5nzlwx2hdbpc4cmcgvrm"; depends=[httr jsonlite yaml]; }; + datarobot = derive2 { name="datarobot"; version="2.18.5"; sha256="0ivnx5pwz4mv4csyclf0h69hywvvqwyb1n2r8m43yvv0mlpnq7gb"; depends=[httr jsonlite yaml]; }; datasailr = derive2 { name="datasailr"; version="0.8.11"; sha256="0ym1aqrlglha36z883yf92rm0fydg1qsdgdy48z32yk41xbhp5iy"; depends=[Rcpp]; }; datasauRus = derive2 { name="datasauRus"; version="0.1.6"; sha256="0vgylf3bab0xcfg08xwvfq9yhxy6w0fxi7wp4kkxfyjb0pw15qxk"; depends=[]; }; dataseries = derive2 { name="dataseries"; version="0.2.0"; sha256="11wc2p5m8qbdmkpbd21lpwl28a1dpab88c3gqyrhsn0298lpnip4"; depends=[]; }; - dataset = derive2 { name="dataset"; version="0.2.1"; sha256="1p7f27q3z810kfgcpcz934s3x8g2dl9dhg0y3sbr4z31kdmcaf8q"; depends=[assertthat ISOcodes]; }; + dataset = derive2 { name="dataset"; version="0.3.0"; sha256="0isk6c16sli3wb2x9kf09virrn31j2r9y8mim8s8x9kyglz3r7j3"; depends=[assertthat ISOcodes]; }; datasetjson = derive2 { name="datasetjson"; version="0.1.0"; sha256="0srxp0layarikjz4nwc2hvgrjj9k019p1iaidarmrfgc9q96lxaa"; depends=[jsonlite jsonvalidate]; }; - datasets_load = derive2 { name="datasets.load"; version="2.2.0"; sha256="187a1z0ljws5fvk91ap94cxm0yw6l47v0f4nhbq71jrk285zm1qr"; depends=[DT miniUI shiny]; }; + datasets_load = derive2 { name="datasets.load"; version="2.3.0"; sha256="1gbc4pc4gq3fgkv1ib83h08s7daim3gnkna07a2yikdsi12w95xw"; depends=[DT miniUI shiny]; }; datasetsICR = derive2 { name="datasetsICR"; version="1.0"; sha256="1iw8am7y6r6j21rp6r6iw1ri4c2yrgza7aw3ams4xbx6mcz3746y"; depends=[]; }; dataspice = derive2 { name="dataspice"; version="1.1.0"; sha256="1pnmb7kdx9wdvi2873rw1a7hc7spsvx4lfvfhfcqwgll46j0f1wm"; depends=[dplyr EML fs ggplot2 jsonlite magrittr purrr readr rhandsontable shiny stringr tibble tidyr whisker]; }; datastepr = derive2 { name="datastepr"; version="0.0.2"; sha256="039yggdj8jdici7hwmkjwgix45lvwjl7rw5h2rfzsm9xaq6vw1z2"; depends=[dplyr lazyeval magrittr R6 tibble]; }; dataverifyr = derive2 { name="dataverifyr"; version="0.1.5"; sha256="14jp4pzgj022b888df1s0p44v90ghr19bsdsa9hx3dx0i7ls8lzs"; depends=[yaml]; }; dataverse = derive2 { name="dataverse"; version="0.3.13"; sha256="1fzbllznvq5mls3hm1pirlkgjlsiwvdkkcqci2jymh376l2gx35g"; depends=[checkmate httr jsonlite readr xml2]; }; - datawizard = derive2 { name="datawizard"; version="0.9.0"; sha256="1w1d18ssd6nbwg2r9gs0779wf33vpl8xivlc79ci5mi4db2m7zsd"; depends=[insight]; }; - datazoom_amazonia = derive2 { name="datazoom.amazonia"; version="1.0.0"; sha256="07b7wg71lvilb0hcimr4shaskl1rixn75nvc3mfxi85hbdkk56xn"; depends=[data_table dplyr Hmisc janitor lubridate magrittr purrr Rcpp readr readxl sf sidrar stringi stringr tibble tidyr XML]; }; + datawizard = derive2 { name="datawizard"; version="0.9.1"; sha256="0d01akddrbvdf16rvws3fh4pjl64myxn7is4qv2szm7hp6wjb4p5"; depends=[insight]; }; + datazoom_amazonia = derive2 { name="datazoom.amazonia"; version="1.1.0"; sha256="1c2l42rwj67lr2910i1wdb04sqqwkdv5ycav6bz3snw349j8mycm"; depends=[data_table dplyr Hmisc janitor magrittr purrr Rcpp readr readxl sf sidrar stringi stringr tibble tidyr XML]; }; date = derive2 { name="date"; version="1.2-42"; sha256="0x6b9dk7llvmcf2bzgdk8g1a28as0l1xxx2xn2fwyw801ab3z4as"; depends=[]; }; dateback = derive2 { name="dateback"; version="1.0.3"; sha256="0ja453w7nlb051sdl9rm2kdk40lz34zrixy3bmmmhjvcmcls9kxs"; depends=[]; }; - datefixR = derive2 { name="datefixR"; version="1.6.0"; sha256="0kl04yz0dc13vl4717qrmv1183gf3f1nq36h1pqpa73dqa4gpzg7"; depends=[lifecycle Rcpp rlang stringr]; }; + datefixR = derive2 { name="datefixR"; version="1.6.1"; sha256="1xmrx8djxc05r9yvgfgkvmp19m2pj6n2g1r4siikwkzlssh2x8fz"; depends=[lifecycle Rcpp rlang stringr]; }; datelife = derive2 { name="datelife"; version="0.6.8"; sha256="154nmpvslnizd03jaxbhkc7vjzjx7j18zlwmrpx2qidqk424k1i9"; depends=[abind ape BiocManager bold cluster compare curl data_table geiger httr ips knitcitations paleotree phangorn phylobase phylocomr phytools plyr rotl stringr taxize treebase]; }; daterangepicker = derive2 { name="daterangepicker"; version="0.2.0"; sha256="03y8r1n31ipapfbbg12myrnqd961ra3fb6r4mjxqfkppxcj9c6mi"; depends=[htmltools jsonify shiny]; }; datetime = derive2 { name="datetime"; version="0.1.4"; sha256="0nn1yxknsn3crmwbkws5kvfjhd65dw0fkfbg67gba0dyaqp1jg37"; depends=[]; }; datetimeoffset = derive2 { name="datetimeoffset"; version="0.3.1"; sha256="11xxxfv3g8jf16cwpxjycrymx9baf8gkpd98x69djhbnrn3si0vn"; depends=[clock purrr vctrs]; }; - datetimeutils = derive2 { name="datetimeutils"; version="0.6-2"; sha256="0cw6aii5lr3k4af75ijklvfwgb5h3x0xk5n2kxzpvmdmmg3x97cd"; depends=[]; }; - datetoiso = derive2 { name="datetoiso"; version="0.1.0"; sha256="1pxk229gfl2zj1arlgyyll6h4bq8d90d2a2a09r216f5vdxafj0j"; depends=[lubridate stringr]; }; + datetimeutils = derive2 { name="datetimeutils"; version="0.6-3"; sha256="0k75r9bvh8wb45mrqk9vbyig8xk623g9cnrk7s6zbcx85ymxmmk6"; depends=[]; }; + datetoiso = derive2 { name="datetoiso"; version="0.2.0"; sha256="1fg5r7ibdgbk1vbhbv6a2p4acd1mhsyyvrjr79cy37gmn1ka72i3"; depends=[lubridate stringr]; }; dateutils = derive2 { name="dateutils"; version="0.1.5"; sha256="03xch5wcvv15fy9x70smrki6374lddhf0sfp0inymdsq4g8wp4bc"; depends=[data_table Rcpp RcppArmadillo seasonal]; }; datoramar = derive2 { name="datoramar"; version="0.1.0"; sha256="0zq6vhq6dmsyagmqrmb85z6fy9qhwra3s3iasr3jgc4ryr009pml"; depends=[httr jsonlite tibble]; }; datos = derive2 { name="datos"; version="0.5.1"; sha256="0358fshhxyws5i1bblhnhf7k42mrjn76ppy2qrvhj27kkc6i5npn"; depends=[babynames dplyr forcats fueleconomy gapminder ggplot2 Lahman modeldata nasaweather nycflights13 palmerpenguins rlang tibble tidyr yaml]; }; + datplot = derive2 { name="datplot"; version="1.1.1"; sha256="1m077srzyza7yb2n8v64y2l02kr19zjy8vvpjz7dh3hmd2sq636r"; depends=[]; }; datr = derive2 { name="datr"; version="0.1.0"; sha256="0sqwhn6zdaq8i45ry207mpbda1djjaxp9mcn13hi5wkry6z0bmlr"; depends=[devtools]; }; datrProfile = derive2 { name="datrProfile"; version="0.1.0"; sha256="1bhyk3xjgwf92i765z3bkdnzkxg8fshriz9r6m371q1c75xysfil"; depends=[dplyr odbc RSQLite]; }; - dauphin = derive2 { name="dauphin"; version="0.3.0"; sha256="04r48wld84by8lwqi9pwdypval814wfshjblmm30v5igwl1xcgzc"; depends=[]; }; + dauphin = derive2 { name="dauphin"; version="0.3.1"; sha256="0p84hnvipi5pvyzwrgl7a1xv7lmq2vm96l6dfbpd2r9vb4mhbrn7"; depends=[]; }; dawai = derive2 { name="dawai"; version="1.2.5"; sha256="0g52bm66jnvga4sf5n5m18k5jx56vqpn886jk0k6lydj78nkq88q"; depends=[boot ibdreg mvtnorm]; }; daySupply = derive2 { name="daySupply"; version="0.1.0"; sha256="1317g60cmqlw1wy7n7x5ifh544lzsysif6192s2k16jmgzj6cz2s"; depends=[dplyr lme4 magrittr rlang]; }; daymetr = derive2 { name="daymetr"; version="1.7.1"; sha256="069s7wxy2yis6x7q4faac0fcr305dxmvan7wc3fzgbix0hianvng"; depends=[httr ncdf4 sf terra tibble tidyr]; }; @@ -8375,7 +8524,7 @@ in with self; { dbMC = derive2 { name="dbMC"; version="1.0.0"; sha256="0gcgn3m10sx0naim206jkw7szl0mr7vbnkn25avvv9f8iy3y9vcv"; depends=[softImpute]; }; dbWebForms = derive2 { name="dbWebForms"; version="0.1.0"; sha256="0diz5mh4fhwrwqa7jr70vzj2jks7h2n91v2hr1mvvlbc7rzd9yki"; depends=[data_table DBI html5 stringi]; }; dbacf = derive2 { name="dbacf"; version="0.2.8"; sha256="03nrd7x2sxkyah8lpi5zawap7yhg6h2gdy0jws1jysw937l1kc50"; depends=[Matrix]; }; - dbarts = derive2 { name="dbarts"; version="0.9-23"; sha256="18spfl9wkrhr9vyql0456h8g39fdip6xjxqf9xfqj8f3i7ynbb71"; depends=[]; }; + dbarts = derive2 { name="dbarts"; version="0.9-25"; sha256="0w6qh90jn1q9kkxfvh5vghma44l4i2f9apzyi2yr4z6ix8l859rr"; depends=[]; }; dbcsp = derive2 { name="dbcsp"; version="0.0.2.1"; sha256="0faq63aqj4ddlfc5dpi8g3ngqidca6czicgvkzdyg4bj87s0kism"; depends=[caret geigen ggplot2 MASS Matrix parallelDist plyr TSdist zoo]; }; dbd = derive2 { name="dbd"; version="0.0-22"; sha256="13qdm0y5dvc107xnv6663gbvmkw77150r073lp1jppf3gs8s587b"; depends=[]; }; dbflobr = derive2 { name="dbflobr"; version="0.2.2"; sha256="04gh0xfdp077f3ppf8i101q17n2r711y47qnxb9nq5ksnf37s5jp"; depends=[blob chk clisymbols crayon DBI flobr glue rlang RSQLite]; }; @@ -8383,20 +8532,20 @@ in with self; { dbhydroR = derive2 { name="dbhydroR"; version="0.2-8"; sha256="1gd3n6i47qbxp6d3y5sjvgmxc5p3afy2lhkg9020ws1xm0bk9q7d"; depends=[httr reshape2 XML]; }; dblcens = derive2 { name="dblcens"; version="1.1.9"; sha256="1m5v8hx9n5rh5f230m8f0iss6s29qjbg4wp1mjihckw8df5qf1aj"; depends=[]; }; dblr = derive2 { name="dblr"; version="0.1.0"; sha256="0wzmhmp706mw0pkh81nsb7qzclwyhm6f2mjvpvz043ng5xrxwvvw"; depends=[CatEncoders data_table Metrics xgboost]; }; - dbmss = derive2 { name="dbmss"; version="2.8-2"; sha256="1fz1hkzsqf8myii502hniw4pihj4nrj7rck3v7f7vhqm10w6zz0v"; depends=[automap cubature dplyr ggplot2 Rcpp RcppParallel reshape2 rlang sp spatstat_explore spatstat_geom spatstat_random spatstat_utils tibble tidyr tidyselect]; }; + dbmss = derive2 { name="dbmss"; version="2.9-0"; sha256="16bmaq8wd7v6vqnycr670sajcyaplkw1g5w5m2ri7ch16ccpqk6j"; depends=[cubature ggplot2 Rcpp RcppParallel reshape2 rlang spatstat_explore spatstat_geom spatstat_random spatstat_utils tibble]; }; dbnR = derive2 { name="dbnR"; version="0.7.8"; sha256="10lw8ax33l0q52pm07fi66fhm06n3yg48plgvz5cg14l98v7g7s5"; depends=[bnlearn data_table magrittr MASS R6 Rcpp]; }; dbnlearn = derive2 { name="dbnlearn"; version="0.1.0"; sha256="0kmyiad7v96mnfi24d2pn3dqmk3g82sx348m1vhhqwijfnj53brb"; depends=[bnlearn bnviewer ggplot2]; }; dbparser = derive2 { name="dbparser"; version="2.0.1"; sha256="0n8hbra1mjrlbzpxlpalx5w84w6xq38v3v3x5rsgkkyzmnk4r5jf"; depends=[dplyr progress purrr tibble XML]; }; dbplot = derive2 { name="dbplot"; version="0.3.3"; sha256="1svizj9hcd417yii8ll9s3mnvdqpa5awy9xl71kbwpfcnpdzqf1r"; depends=[dplyr ggplot2 magrittr purrr rlang]; }; - dbplyr = derive2 { name="dbplyr"; version="2.3.4"; sha256="1b6y1jhf5ix4vry165vwid5nqm0d99q61vxak6aw3vfkj379vgk9"; depends=[blob cli DBI dplyr glue lifecycle magrittr pillar purrr R6 rlang tibble tidyr tidyselect vctrs withr]; }; - dbscan = derive2 { name="dbscan"; version="1.1-11"; sha256="0bz66lvvg7290c5260ph92k4r7adgisbx3vml9096qhjwrkqwjgh"; depends=[Rcpp]; }; + dbplyr = derive2 { name="dbplyr"; version="2.4.0"; sha256="1rzi8112fi0bx2fj0j5ak9bfgqgjk5k5dv66qrb890gsf5bz6m4i"; depends=[blob cli DBI dplyr glue lifecycle magrittr pillar purrr R6 rlang tibble tidyr tidyselect vctrs withr]; }; + dbscan = derive2 { name="dbscan"; version="1.1-12"; sha256="1snfcf5jy3chh5nmvn7ashhlyv35nkajlfrlk9kzpy4jnfyv3y2n"; depends=[Rcpp]; }; dbstats = derive2 { name="dbstats"; version="2.0.1"; sha256="1sa33ir8hj0z0d2ry4w7bhilx94alhdvjc4bzaj09alv6w39gpcn"; depends=[cluster pls]; }; - dbx = derive2 { name="dbx"; version="0.2.8"; sha256="0pdf0l9h44666bmfsa43nrmi77ffzygb5mzjfrv7pk99qi7ryw46"; depends=[DBI]; }; + dbx = derive2 { name="dbx"; version="0.3.1"; sha256="15ynl3w92h2bfgf5489qi0la8dkwlmp9hf64h230bvxvip9459hg"; depends=[DBI]; }; dc3net = derive2 { name="dc3net"; version="1.2.0"; sha256="19ibsvbnq6y88vqvgkm31zrqwjhpml59d792bz0zkk50r1q5bnyr"; depends=[c3net igraph RedeR]; }; dcTensor = derive2 { name="dcTensor"; version="1.2.0"; sha256="0y2imnbgvbvbmqb1vmzyykjfzkh0ckiv5q7fp4zvi2ci0w9hf90n"; depends=[fields MASS nnTensor rTensor]; }; dccmidas = derive2 { name="dccmidas"; version="0.1.0"; sha256="0ng46i9rv4aw26af03ryhmcrb8xhhd8d72zbqiwrzhhkh18azbgx"; depends=[lubridate maxLik Rcpp RcppArmadillo Rdpack roll rugarch rumidas tseries xts zoo]; }; dccpp = derive2 { name="dccpp"; version="0.1.0"; sha256="1j17rv9wklmxbxa6ri9vhl370jzhi00h7h8hz1ajzqf6v3b2lkvc"; depends=[Rcpp RcppArmadillo]; }; - dcifer = derive2 { name="dcifer"; version="1.2.0"; sha256="0h7wir2xd2lr6h9hh8wr335lxr5w7grf7gjhqpg3a36ycd8mibbv"; depends=[]; }; + dcifer = derive2 { name="dcifer"; version="1.2.1"; sha256="1pibkybr2v1qci2vqbz1sms01y81x0i4r2sq23c5xkgwnwccfy9r"; depends=[]; }; dclone = derive2 { name="dclone"; version="2.3-2"; sha256="1x0fx24fxb7zp9g9lrdb1hbljgmi9szrsh751jidm52fin863qz0"; depends=[coda Matrix R2OpenBUGS rjags rstan]; }; dclust = derive2 { name="dclust"; version="0.1.0"; sha256="1icfx52v3g7kkkc11pw0xlrc8dlx5q3n2zbrd3fccmw17jzxqbg7"; depends=[openssl phylogram]; }; dcm2 = derive2 { name="dcm2"; version="1.0.2"; sha256="1dxymql66sy0nfxqfh106cvz5r93ajpjr1w8amn03w0ciz4v5nqs"; depends=[dplyr glue magrittr modelr purrr Rcpp RcppArmadillo rlang stringr tibble tidyr]; }; @@ -8412,7 +8561,7 @@ in with self; { dde = derive2 { name="dde"; version="1.0.4"; sha256="1qwa9vmsjq9d4z08ja687058bpx7zg16k0pwk2knkjya3clz774k"; depends=[ring]; }; ddi = derive2 { name="ddi"; version="0.1.0"; sha256="0pnkylz7l6brx6i73wys637w811psxhnr39lcmkag41s6jcgabd5"; depends=[]; }; ddiv = derive2 { name="ddiv"; version="0.1.1"; sha256="0xsn74z78znrm3rnnvdphp89sb0lik564ha3wv6n3ldrfh1van8y"; depends=[MASS qpdf segmented]; }; - ddml = derive2 { name="ddml"; version="0.1.0"; sha256="1vqlqhkns0ghn1vz5xdln263f6jlpkv4sw3bdy2r0abbbjmg63w5"; depends=[AER glmnet MASS Matrix nnls quadprog ranger xgboost]; }; + ddml = derive2 { name="ddml"; version="0.2.0"; sha256="07nbdx2qd4f7yrgq00djwfxil2qgnrgd4r5rrzyqcwbv21xz0ayw"; depends=[AER glmnet MASS Matrix nnls quadprog ranger xgboost]; }; ddp = derive2 { name="ddp"; version="0.0.3"; sha256="03gszqzh73zq04hqa2zgxn4fkiyr1fbhx3byxsdfzmmji46f8qip"; depends=[]; }; ddpca = derive2 { name="ddpca"; version="1.1"; sha256="1qsanid7sr2nc9pwzyz4cbjc1vg0rj255d3rnh1rb22agrgj2bc1"; depends=[MASS Matrix quantreg RSpectra]; }; ddpcr = derive2 { name="ddpcr"; version="1.15.2"; sha256="1as25yc23n6jj87nccp7g2jrpvz6yxa7f6ba65g6ynvkzk57531b"; depends=[dplyr DT ggplot2 lazyeval magrittr mixtools plyr readr shiny shinydisconnect shinyjs tibble]; }; @@ -8421,9 +8570,9 @@ in with self; { ddst = derive2 { name="ddst"; version="1.4"; sha256="1y0immm337adkd2bjx8c5pf02w9wysv3gj26f4qf0jiba0f2wk8n"; depends=[evd orthopolynom]; }; ddtlcm = derive2 { name="ddtlcm"; version="0.1.1"; sha256="0ml423182xgxsdfzvl5xnyxp9ijmx5bkwvwdaqmfwk86x3994cbs"; depends=[ape BayesLogit data_table extraDistr ggplot2 ggpubr ggtext ggtree label_switching Matrix matrixStats phylobase poLCA R_utils Rdpack truncnorm]; }; deBInfer = derive2 { name="deBInfer"; version="0.4.4"; sha256="1l4wim82n5q51c1f7193d3i22qrn9kfcsddyrn8izhlwsjb9q3kp"; depends=[coda deSolve MASS mvtnorm PBSddesolve plyr RColorBrewer truncdist]; }; - deBif = derive2 { name="deBif"; version="0.1.7"; sha256="1jz5kxhjbsfd2mvy6dhs7h3zx7gp6j2bg2sf9q08wx61q3b6ksq6"; depends=[deSolve rootSolve rstudioapi shiny shinydashboard shinydashboardPlus shinyjs]; }; + deBif = derive2 { name="deBif"; version="0.1.8"; sha256="0zy9pn6994bpbfjk4w52qvfckcilq5nz1v21bqc63grkz0lmlgzy"; depends=[deSolve rootSolve rstudioapi shiny shinydashboard shinydashboardPlus shinyjs]; }; deFit = derive2 { name="deFit"; version="0.2.1"; sha256="0z4lc9s3wb7gab7cg1xr9gkggd2dxy8qbqqvbz1yxvnm86n2ai79"; depends=[deSolve ggplot2 R6]; }; - deSolve = derive2 { name="deSolve"; version="1.38"; sha256="0sc933g0jx25b7fm5bl6is95mn4fn1sf8cgb6qzhlmmf8rfgxd50"; depends=[]; }; + deSolve = derive2 { name="deSolve"; version="1.40"; sha256="1vq0yli1pkk3z92x1jgm4z19zwwhnwqdxvj4k2dmcnw7nrmsw2cc"; depends=[]; }; deTS = derive2 { name="deTS"; version="1.0"; sha256="08yq7vfcd8fv8qw2w0f1rnj3rzys9kslmkqspmiz6prmzqvj1zf1"; depends=[pheatmap RColorBrewer]; }; deaR = derive2 { name="deaR"; version="1.4.1"; sha256="0rc12pr4br8kca90xcy5f8w1fyjzn6s7kyc3q3m3caxq8dlidn5v"; depends=[dplyr ggplot2 gridExtra igraph lpSolve plotly tidyr writexl]; }; deadband = derive2 { name="deadband"; version="0.1.0"; sha256="02pq3d0l0wy8bdlyfir3zf46j1ascx4qajyq5cf28yl62q6ngq5d"; depends=[TTR]; }; @@ -8435,9 +8584,10 @@ in with self; { decision = derive2 { name="decision"; version="0.1.0"; sha256="13d0yyg5zp7n3r92l0l1dsffxfph6vacrlzga9rz41l5pja72z6g"; depends=[]; }; decisionSupport = derive2 { name="decisionSupport"; version="1.113"; sha256="0gxhxjpn9nzn1s7xm9cy9g82b68g8dg6654dbj4qr4aj3cfk14w8"; depends=[assertthat chillR class dplyr fANCOVA ggplot2 ggstance magrittr msm mvtnorm nleqslv patchwork rriskDistributions stringr tidyr tidyselect]; }; deckgl = derive2 { name="deckgl"; version="0.3.0"; sha256="0cjvmdiqknrq8mlqxmhkhcib40asdyl2bpllx8v1jz3h1d62zs04"; depends=[base64enc htmltools htmlwidgets jsonlite magrittr readr tibble yaml]; }; - declared = derive2 { name="declared"; version="0.23"; sha256="0y01xa9vw6v8dw1sm2ijvxhwfx54iwggy0qicamp9ljs5bcgvz6h"; depends=[]; }; + declared = derive2 { name="declared"; version="0.24"; sha256="0zj5rvdj2jcy23nms5dhqjp9w4sd87r7cr4slh6qli15w75ryr50"; depends=[]; }; decode = derive2 { name="decode"; version="1.2"; sha256="1qp0765gl3pgfdzjwj7icf3zminxxmrlw6gx3vj51y6c2y5ws4as"; depends=[]; }; decoder = derive2 { name="decoder"; version="1.2.2"; sha256="1jxgd32bn36ldal26wivhdxgjy247l7r4ickacr1p8rrwxvhpk18"; depends=[]; }; + decompDL = derive2 { name="decompDL"; version="0.1.0"; sha256="11xbxv2j8m1w4lz933jvwy20wsazqiffnn0awgv7fz6q3ma5cqkh"; depends=[BiocGenerics keras magrittr reticulate Rlibeemd tensorflow TSdeeplearning tsutils VMDecomp]; }; decomposedPSF = derive2 { name="decomposedPSF"; version="0.2"; sha256="12sb4zzvc29hvhlay97g84pn4saqyp16wckjrdgg4qqpc0rzrfz5"; depends=[forecast PSF Rlibeemd tseries]; }; decompr = derive2 { name="decompr"; version="6.4.0"; sha256="0bsin2hlb8sacmkzsv4b2fqdh5b55b67lkm41icacqnvxrisnxqp"; depends=[matrixStats]; }; decon = derive2 { name="decon"; version="1.3-4"; sha256="036cv56wf42q2p3d5h15hbrp5rc29xxy20qwv4k1qzhkq6hmw0qs"; depends=[]; }; @@ -8447,6 +8597,7 @@ in with self; { decorators = derive2 { name="decorators"; version="0.3.0"; sha256="1y47ggfsfrbsm8z78j5ibxbm4lhp90h3qwhyh4qw5dhsd6jspsbd"; depends=[purrr]; }; deducorrect = derive2 { name="deducorrect"; version="1.3.7"; sha256="10lvhdnnc6xiy20hy6s5rpqcvilj8x0y6sn92rfjkdbfsl00sslp"; depends=[editrules]; }; deductive = derive2 { name="deductive"; version="1.0.0"; sha256="11cn6wncd438g5ar5pjw6rw50060mksjf0xjcds92s97dz5m28a4"; depends=[lintools stringdist validate]; }; + deduped = derive2 { name="deduped"; version="0.2.0"; sha256="0qb9g8fpb0ggkwhvp2l5y0lp0pgkfyxzcnmaq2ln9y2z1zgmh866"; depends=[collapse fastmatch]; }; dedupewider = derive2 { name="dedupewider"; version="0.1.0"; sha256="18s8m0nzmx8ai4gcv5rv3rvmngw1q0pxj013v433xj76z2drqdaz"; depends=[data_table]; }; deep = derive2 { name="deep"; version="0.1.0"; sha256="1764cnsax8jwp2pb6rnmlb0f5m99jss84yi9rp017hdm20izvzrq"; depends=[]; }; deepMOU = derive2 { name="deepMOU"; version="0.1.1"; sha256="1r05wg01nighmhs2r8z91w091fz2r1ryb1j0mi96knqqdjgcbh4i"; depends=[dplyr entropy extraDistr ggplot2 MASS Rfast skmeans]; }; @@ -8456,13 +8607,14 @@ in with self; { deepdive = derive2 { name="deepdive"; version="1.0.4"; sha256="0q4jjq11bd52bx0vqjxsh0fz1b72pfy4gpj5p19z7p4czf4a46c6"; depends=[data_table fastDummies plyr rpart stringr treeClust]; }; deepgmm = derive2 { name="deepgmm"; version="0.2.1"; sha256="0vwh8wgbva2a47b2yiiqjwq5qww2ckb4l66265sbp1lbis0g96li"; depends=[corpcor mclust mvtnorm]; }; deepgp = derive2 { name="deepgp"; version="1.1.1"; sha256="0w08mdr9cszmkm1382md0lklhnna95ah0kv6kzniv3ly3fvwin2f"; depends=[doParallel FNN foreach GpGp Matrix mvtnorm Rcpp RcppArmadillo]; }; - deeplr = derive2 { name="deeplr"; version="2.0.0"; sha256="189kfcsd3cr0397krbfqh56x7h0v6i27s5jbfwr5zrf3jazllall"; depends=[httr purrr tibble tokenizers utf8]; }; + deeplr = derive2 { name="deeplr"; version="2.0.1"; sha256="0xzhycw3yylq6hvaba3dv2wpmfaj9z6v6mzli8r4dbbzzaaa8214"; depends=[httr purrr tibble tokenizers utf8]; }; deepnet = derive2 { name="deepnet"; version="0.2.1"; sha256="0gnf50007sj28daaz2r1rp8mvz1xpc2901bxl4yb1v4s4rcx6rhg"; depends=[]; }; deepredeff = derive2 { name="deepredeff"; version="0.1.1"; sha256="027dsmc3wmm61qc0vybn02c5dbnz5nwf80m9sywci4nhirz978ik"; depends=[Biostrings dplyr ggplot2 ggthemes keras magrittr purrr reticulate rlang seqinr tensorflow]; }; deepregression = derive2 { name="deepregression"; version="1.0.0"; sha256="15d33dsdhmw7n172rlsg70921d3z3bkn088qj565iclzmxknyfzj"; depends=[dplyr keras magrittr Matrix mgcv R6 reticulate tensorflow tfprobability tfruns]; }; deeptime = derive2 { name="deeptime"; version="1.0.1"; sha256="049vgkjcxqh009czrzj59j8rjmlr86q22v3x8fq9242jixbs3hzg"; depends=[cli curl ggfittext ggforce ggnewscale ggplot2 gridExtra gtable lattice lifecycle phytools rlang scales]; }; deeptrafo = derive2 { name="deeptrafo"; version="0.1-1"; sha256="16lxxd75j9bwapfx716b9fmqfz6ms4x5g98wc1yykiahjpbj8156"; depends=[deepregression Formula keras mlt purrr R6 reticulate survival tensorflow tfprobability variables]; }; default = derive2 { name="default"; version="1.0.0"; sha256="0hzxgp9la9kll5cw3m4gd02rii571xsn1v53kz407k7k6rfg5mda"; depends=[]; }; + defineOptions = derive2 { name="defineOptions"; version="0.9"; sha256="1al08lqiy8x6jc1mrxm785pqqlfqlhzxbr2lwnixj6mqmkqlwp6g"; depends=[]; }; defineR = derive2 { name="defineR"; version="0.0.4"; sha256="1wm6ynicwk2dlx8m0k45kc1pa8i3z8w78xk3v40szy2ys5j80m7v"; depends=[common glue libr openxlsx readxl reporter xml2 xslt]; }; deflateBR = derive2 { name="deflateBR"; version="1.1.2"; sha256="17zsy10k12gmffbk7nagi60xj347q0bf7wr885fiylqz2xiy9fl9"; depends=[dplyr httr lubridate]; }; deflist = derive2 { name="deflist"; version="0.2.0"; sha256="0m19yz3x4gn8zad7lgf343r41bqjvd5a279ykll8cw04y74c43lm"; depends=[assertthat memoise purrr rlang]; }; @@ -8475,7 +8627,7 @@ in with self; { degross = derive2 { name="degross"; version="0.9.0"; sha256="17n389a0k4jswgs908bcdhi410wpd1ljxh5izv35cldfq7dhjb3k"; depends=[cubicBsplines]; }; dejaVu = derive2 { name="dejaVu"; version="0.3.0"; sha256="0l30m707zrp05d7hywlx443n02mflxqsampmcblj3fvcbyywc1fd"; depends=[MASS]; }; delayed = derive2 { name="delayed"; version="0.4.0"; sha256="0a00jwd4c69ba31xddl0gxjza6ydywlrgx21rm3bn8p247q5i37f"; depends=[BBmisc data_table future igraph progress R_oo R_utils R6 rlang rstackdeque uuid visNetwork]; }; - deldir = derive2 { name="deldir"; version="1.0-9"; sha256="11q6cz410q8sv0w81fk1px3vx7xmyda5cbsv3m21xr577bn28yhj"; depends=[]; }; + deldir = derive2 { name="deldir"; version="2.0-2"; sha256="1qzfq47fs3pr0946m53z6cq93pbpkgwwhqkcdgfahxsq1izpigz9"; depends=[]; }; deltaPlotR = derive2 { name="deltaPlotR"; version="1.6"; sha256="15vjg3viyfrxvvh34p8i7j8p0vpg5628g8198adhi0i2ri3ygz9a"; depends=[MASS]; }; deltaccd = derive2 { name="deltaccd"; version="1.0.2"; sha256="1iqyycjfmclr9y8gfj61naxwafjgmfwahyrc110qxzb239b501rw"; depends=[data_table doRNG foreach ggplot2 rlang scales statmod]; }; dematel = derive2 { name="dematel"; version="0.1.0"; sha256="1m84sd46cg7188wnjx09g88xvxdp7i0mdxnynwlqkgcmnwx4bdjw"; depends=[ggplot2 knitr]; }; @@ -8515,9 +8667,9 @@ in with self; { depth_plot = derive2 { name="depth.plot"; version="0.1"; sha256="0zjg9iyqmcnkvwc9w2j7lmk3k9nsg6n8m6vq5x44d1bp4g2gr6jv"; depends=[mvtnorm]; }; depthTools = derive2 { name="depthTools"; version="0.7"; sha256="00pn4ccsg1hjv83xqk4g0g24cz2a87shlbg8kd2dri4dcagzifg0"; depends=[]; }; derivmkts = derive2 { name="derivmkts"; version="0.2.5"; sha256="0zjdpjd7qa7zg0dyyq1y4rskk8bi2jpsxzrdg43lnsyrxg99q1n6"; depends=[mnormt]; }; - desc = derive2 { name="desc"; version="1.4.2"; sha256="0z1259ghccmrjylydra4bpryqasirsky7bc4gsx0k327pqacz2km"; depends=[cli R6 rprojroot]; }; + desc = derive2 { name="desc"; version="1.4.3"; sha256="09ig14bm68cps6d1mrmj6hhjr01i6gz1ri35qpkwk3yp7nkqsijl"; depends=[cli R6]; }; descomponer = derive2 { name="descomponer"; version="1.6"; sha256="1yznb6j850gap1bacvx5dkh4030x38041ll61z6an6h7j71yyc5p"; depends=[]; }; - descr = derive2 { name="descr"; version="1.1.7"; sha256="1wg508l2r14kp4vajidp2i1xg23fmlmicdgf6q4p6wagzgwpapqs"; depends=[xtable]; }; + descr = derive2 { name="descr"; version="1.1.8"; sha256="0yyxh1030pfjriwm8xfx9rp32cq7jfqlxq8mim1qvx06siah545c"; depends=[xtable]; }; describedata = derive2 { name="describedata"; version="0.1.0"; sha256="10ryy886jr2gwi6h90girl82ivwrmhz1vcwi4f6khmmpwsy95hav"; depends=[broom dplyr forcats ggplot2 haven lmtest purrr rlang stringr tibble tidyr]; }; describer = derive2 { name="describer"; version="0.2.0"; sha256="1pjyihmn4gkaamixsc3qwynsc02pwv9bgn6s7z7acmmsybhhs6xn"; depends=[]; }; descriptio = derive2 { name="descriptio"; version="1.2"; sha256="140zaj10q1cbwjc4d0vmh0vbqh8617b61ys9hdsndhafkc0d02ia"; depends=[ggplot2 MASS rlang]; }; @@ -8525,6 +8677,7 @@ in with self; { descstat = derive2 { name="descstat"; version="0.1-2"; sha256="0q463p0bq80c9lhwfv4imbhgx6f1w2jqm3022p5zvycfa9w39rin"; depends=[cli dplyr forcats magrittr purrr rlang tibble tidyr tidyselect]; }; descstatsr = derive2 { name="descstatsr"; version="0.1.0"; sha256="1pz5lww1dkkqvsq6h0vkch39bj76qffmmag3zlag5in75s4wj0wl"; depends=[moments zoo]; }; desctable = derive2 { name="desctable"; version="0.3.0"; sha256="1i0124lnmzdbx468lyqmzbd6disxjifqjy8ss10fl8cin4f868lb"; depends=[dplyr DT htmltools pander rlang tidyr]; }; + deseats = derive2 { name="deseats"; version="1.0.0"; sha256="144906bjb4hxv5m3cf8cjpp35548icnjfzxlqj17g2sc62wx6ngl"; depends=[animation furrr future future_apply ggplot2 progressr purrr Rcpp RcppArmadillo rlang shiny zoo]; }; desiR = derive2 { name="desiR"; version="1.2.2"; sha256="149wgg5mbq95wizpc24mwb8qfxjdia4qkz66bnzjgiiyfh6r46wp"; depends=[]; }; designer = derive2 { name="designer"; version="0.3.0"; sha256="0fsvlrciym2g9mp96kwb04md1jnqxwj39zd8q5dihijj0p1ib5mi"; depends=[bs4Dash bslib cicerone config fontawesome golem htmltools jsonlite rappdirs shinipsum shiny shinyscreenshot]; }; designmatch = derive2 { name="designmatch"; version="0.5.4"; sha256="1x3pcwml6pa56ij2bc9jymfp066v7fd2avjl6awgpy3503qr56q1"; depends=[highs lattice MASS slam]; }; @@ -8540,6 +8693,7 @@ in with self; { detectRUNS = derive2 { name="detectRUNS"; version="0.9.6"; sha256="0yl1x0jz66hingbl094picsiyrxzxvnz0grq63rva6nwn7pv1c0b"; depends=[data_table ggplot2 gridExtra iterators itertools plyr Rcpp reshape2]; }; detectnorm = derive2 { name="detectnorm"; version="1.0.0"; sha256="1cr5i73iigmsg0ywlm61iv1yw91vafbbf4dhvcd448qnv05cjlaw"; depends=[ggplot2 nleqslv psych Rdpack truncnorm]; }; detector = derive2 { name="detector"; version="0.1.0"; sha256="010i063b94hzx7qac8gpl67gmk7hzgqm9i1c7pbbw4la3wcd9lz7"; depends=[stringr]; }; + detectors = derive2 { name="detectors"; version="0.1.0"; sha256="0bi14jv2za3a5xanqchzs7qpm71syaw5j1lcs5q2fc5hbyfp0lvw"; depends=[]; }; detectseparation = derive2 { name="detectseparation"; version="0.3"; sha256="05z3p1z5mhmdj5qdknz1b8f6fwbghzckl88pv79v59cfwpbvgmz8"; depends=[lpSolveAPI pkgload ROI ROI_plugin_lpsolve]; }; detourr = derive2 { name="detourr"; version="0.1.0"; sha256="1kic6a5s8wm59za9zr8n2z33kfvahgfaa0izy2lp4j75am0jxlra"; depends=[htmlwidgets purrr rlang tibble tidyselect tourr viridisLite]; }; detpack = derive2 { name="detpack"; version="1.1.3"; sha256="1mk2k9akagz7knd4n5p8nxkmnm2mdv9izk4i5yl2v9nv5v39mc4h"; depends=[]; }; @@ -8551,8 +8705,8 @@ in with self; { devRate = derive2 { name="devRate"; version="0.2.4"; sha256="06060wxji3mfwq6c58gmb07mz9sk9d5ls9d152vywjnz20ndpscd"; depends=[]; }; devoid = derive2 { name="devoid"; version="0.1.2"; sha256="1hdqww5al3wv3jncfj8zqwypv487hc4pdb1d4f1c3w68fp0b1zni"; depends=[]; }; devtools = derive2 { name="devtools"; version="2.4.5"; sha256="0jwh14clyj5flygpmifk01avs7mbnj2s1686pxzfrkcshfyhw5iq"; depends=[cli desc ellipsis fs lifecycle memoise miniUI pkgbuild pkgdown pkgload profvis rcmdcheck remotes rlang roxygen2 rversions sessioninfo testthat urlchecker usethis withr]; }; - dexter = derive2 { name="dexter"; version="1.2.2"; sha256="1bvrxbg564y5wwndl92xhz628c7qpjz7vh44a0r0rc7lrc8h0hsx"; depends=[DBI dplyr MASS Rcpp RcppArmadillo rlang RSQLite tidyr]; }; - dexterMST = derive2 { name="dexterMST"; version="0.9.3"; sha256="1c30v83lx6p90l8a9kia5p0361j3ymbabyb2r6dkkak8n8zwfydl"; depends=[crayon DBI dexter dplyr igraph Rcpp RcppArmadillo rlang RSQLite tidyr]; }; + dexter = derive2 { name="dexter"; version="1.3.3"; sha256="11cn6ij402dqccjz6bv43c8b3xk25ljr8c0r6wwwxp2vd3c9fwlg"; depends=[BH DBI dplyr dqrng MASS Rcpp RcppArmadillo rlang RSQLite sitmo tidyr]; }; + dexterMST = derive2 { name="dexterMST"; version="0.9.6"; sha256="073xx30gavig6nhi6ppll7jdgf7yvci8nv6pyxcy9vl177l1k62b"; depends=[crayon DBI dexter dplyr igraph Rcpp RcppArmadillo rlang RSQLite tidyr]; }; dextergui = derive2 { name="dextergui"; version="0.2.6"; sha256="10v3djwani0zd27cjlf7lch7rfipnmb2p5wa7n2y5qxjqxli9z3x"; depends=[Cairo DBI dexter dplyr DT ggExtra ggplot2 ggridges htmltools htmlwidgets jsonlite networkD3 RCurl readODS readxl rlang shiny shinyBS shinyFiles shinyjs tibble tidyr writexl]; }; df2yaml = derive2 { name="df2yaml"; version="0.3.1"; sha256="1ni61pf7sjwvgbfvwy91n6fbs6aa5vviq0xy6jsgddbwrk9diigj"; depends=[dplyr magrittr rlang rrapply tibble yaml]; }; dfCompare = derive2 { name="dfCompare"; version="1.0.0"; sha256="1lhx69j0bkjbnp5jz23hrbxjcf04vf3big4k593ixz003xs2077f"; depends=[]; }; @@ -8567,7 +8721,7 @@ in with self; { dfmta = derive2 { name="dfmta"; version="1.7-3"; sha256="0n9056vd75vqxddagj4k23znvwv58db306xm4vv9sq044jc7kkg6"; depends=[BH Rcpp RcppArmadillo RcppProgress]; }; dfoliatR = derive2 { name="dfoliatR"; version="0.3.0"; sha256="0gl1acd5z67c2wkb806myr0ccm87waxdrnnjdq2wi8zndbc30j74"; depends=[dplR dplyr forcats ggplot2 ggpubr glue magrittr purrr rlang tibble tidyr]; }; dfoptim = derive2 { name="dfoptim"; version="2023.1.0"; sha256="0c2ws249n8ib7fx8vp32l2hswicjxsds7xm1f4gcfky9cvcacdn4"; depends=[]; }; - dformula = derive2 { name="dformula"; version="0.1"; sha256="0028qm3wsfpjbkpza5nb87pcm8cg0075jclcy6s4wfflizgfs6n4"; depends=[formula_tools]; }; + dformula = derive2 { name="dformula"; version="1.0"; sha256="1vylfnivkp4gv7wv7pjby918x3v8pnh0qds1hwmw5980na283qif"; depends=[formula_tools]; }; dfped = derive2 { name="dfped"; version="1.1"; sha256="11ffsah14igba276m9d3cla0kgb3isizm5d7j1iqcd0wq23il7hq"; depends=[ggplot2 rstan]; }; dfphase1 = derive2 { name="dfphase1"; version="1.2.0"; sha256="0a9cxdc81rib84sgg5mpf28nhcv1g83kvnr7rin3djyv60ccrq8x"; depends=[lattice Rcpp robustbase]; }; dfrr = derive2 { name="dfrr"; version="0.1.5"; sha256="0kgsi2jysv0hpdvmv1fng41ar7p3pgzgf1vv0dcm954jdrl2dz6d"; depends=[fda ggplot2 MASS plotly tmvtnorm]; }; @@ -8575,7 +8729,7 @@ in with self; { dga = derive2 { name="dga"; version="2.0.1"; sha256="1q860hzxrbkpmnphdysx4wk1b46wjll8sw7xjsy1lxcaz9hwcnjk"; depends=[chron Rcpp RcppArmadillo]; }; dggridR = derive2 { name="dggridR"; version="3.0.0"; sha256="1915lc81yw6ns02fi37xjqd2zbdzhdsvqqb6c9w4b6i0665yb9ja"; depends=[dplyr Rcpp rlang sf sp]; }; dglars = derive2 { name="dglars"; version="2.1.7"; sha256="0nr18ry5jzjm77xc3z85szx6sij7a4faa1c47bkswsjiijpljjx2"; depends=[Matrix]; }; - dglm = derive2 { name="dglm"; version="1.8.5"; sha256="087pvd3r9w4920xml3hrlwa95lknhmffyn8lqbw627y2d1zwsx1c"; depends=[statmod]; }; + dglm = derive2 { name="dglm"; version="1.8.6"; sha256="1xgvfdlsgi14mv02k71dg0g21yhzzzpaf0dlaq26w6565046m6iy"; depends=[statmod]; }; dgof = derive2 { name="dgof"; version="1.4"; sha256="0pbggby27av3nqbkp1b7xyn3zkjglanvl2d3wwmwwzdridjnaqfm"; depends=[]; }; dgpsi = derive2 { name="dgpsi"; version="2.3.0"; sha256="1zp7my510ag3i0clqwqa5hr4ara9amq55cfyqbrnm837g9lwbnkv"; depends=[benchmarkme bitops clhs ggforce ggplot2 lhs patchwork reshape2 reticulate]; }; dgumbel = derive2 { name="dgumbel"; version="1.0.1"; sha256="1qlc81rh6fcrai9ls27j83bjac26qhpfnchf9pdjz86dyclfjx43"; depends=[Rcpp RcppEigen]; }; @@ -8592,7 +8746,7 @@ in with self; { diagonals = derive2 { name="diagonals"; version="6.4.0"; sha256="1c5pf23bcq47m9n2s5m5bkcksnifz9g06xc9149163i8mqhzia7l"; depends=[]; }; diagram = derive2 { name="diagram"; version="1.6.5"; sha256="1r3lyl0h7mk9cfg8smr3jydfkjdawaphnxibkxfjqa7029vkxh79"; depends=[shape]; }; dialr = derive2 { name="dialr"; version="0.4.2"; sha256="16lpb93shwr0gw7pk3q629kgsvh9csgxyy344m9za7qx9m2vjnnb"; depends=[dialrjars rJava]; }; - dialrjars = derive2 { name="dialrjars"; version="8.13.2"; sha256="1h9b2mvjbsxyclklc8lx8mymkbq8c5p06j5dxnxgk4mkpiazgr7i"; depends=[rJava]; }; + dialrjars = derive2 { name="dialrjars"; version="8.13.25"; sha256="1dy7s4ssa1xkw6m663h0hf79jf09cd98r009cp6s3gggpylfi7bm"; depends=[rJava]; }; dials = derive2 { name="dials"; version="1.2.0"; sha256="1zj8f47jzgaydp3cff96w0kx1gm208vyq3f77p3g59nc01r0wri4"; depends=[cli DiceDesign dplyr glue hardhat lifecycle pillar purrr rlang scales tibble vctrs withr]; }; diaplt = derive2 { name="diaplt"; version="1.4.0"; sha256="103hq13ql8xs1zb90is2r1lanj5vpvz9rk315zvbd8am00fshc9n"; depends=[]; }; diathor = derive2 { name="diathor"; version="0.1.0"; sha256="0nbqjaxb2fzcg9w67nbrszwv9swr1kjmg4dximfc8qdya1kmv8z9"; depends=[data_table ggplot2 purrr stringdist stringr tibble tidyr vegan]; }; @@ -8614,7 +8768,7 @@ in with self; { difconet = derive2 { name="difconet"; version="1.0-4"; sha256="0cjadi4mnpfmy18vyp0dw55mnhs0zddf51w59gvq6gszk145z3bq"; depends=[data_table gplots mvtnorm stringr]; }; diffEnrich = derive2 { name="diffEnrich"; version="0.1.2"; sha256="0fa0v24ir8an82mx38489zavqfya3130q9z52dmm62lnf7pvkvzl"; depends=[dplyr ggnewscale ggplot2 here reshape2 rlang stringr]; }; diffIRT = derive2 { name="diffIRT"; version="1.5"; sha256="0kip6wz9l9q80qsqwf32pwz7d9vqin6dgfwf0nxlrlzf8xjsxgim"; depends=[statmod]; }; - diffcor = derive2 { name="diffcor"; version="0.8.0"; sha256="1dwr6ygh70rvmbs0pg6sqwxvzr3cvkp1rj69x7dnq753b7v2s3j6"; depends=[MASS]; }; + diffcor = derive2 { name="diffcor"; version="0.8.1"; sha256="14m19ngrxxckx4idh5954a517bn2i01mbdm3s7jff5vicd9y6q6l"; depends=[MASS]; }; diffdf = derive2 { name="diffdf"; version="1.0.4"; sha256="03cr0gvspchdj49kiggsm6i9h5d9z07aswggj4n46lnyz52ihivj"; depends=[tibble]; }; diffdfs = derive2 { name="diffdfs"; version="0.9.0"; sha256="1b61wx9fy7a4rb6jh1cvayf1w1far74pgcliqyk9pzn06nlqylfj"; depends=[arrow dplyr janitor rlang]; }; diffeR = derive2 { name="diffeR"; version="0.0-8"; sha256="0l2pm4kh6yq3h3v27a5r28c0724g89pglaxd14f14cdxk51hznqx"; depends=[ggplot2 raster rlang terra tidyr tidyselect]; }; @@ -8628,7 +8782,6 @@ in with self; { diffudist = derive2 { name="diffudist"; version="1.0.1"; sha256="0s8k949l7fvdy0c1zlrk4zr5dnxksq67spwg8mpdsyc2xchh7b5c"; depends=[expm ggdendro ggplot2 igraph Matrix RColorBrewer Rcpp RcppEigen reshape2 rlang viridis]; }; diffusion = derive2 { name="diffusion"; version="0.2.7"; sha256="1j9s9vw5sc4k956bk4yp3bf4fnp7lhhkwcvlzvsh1w4dyaj8l35h"; depends=[dfoptim nloptr systemfit]; }; diffusionMap = derive2 { name="diffusionMap"; version="1.2.0"; sha256="1rvk7069brlm1s9kqj4c31mwwr3mw4hmhay95cjjjfmw5xclff2j"; depends=[igraph Matrix scatterplot3d]; }; - diffusr = derive2 { name="diffusr"; version="0.1.4"; sha256="1f3h387kblw1xzdnxphwgfl1n7f6i07kk7kfslvbfxkalbish6ii"; depends=[igraph Rcpp RcppEigen]; }; diffval = derive2 { name="diffval"; version="1.1.0"; sha256="1qhbby9zfckkkxbpvbnym3i1pfapgrjf0m61fly9v7k50j07d4cd"; depends=[]; }; diffviewer = derive2 { name="diffviewer"; version="0.1.1"; sha256="01phkaaa0zylyi23siwam18i1ggfgq2m66d69lnz9ips1yh12yca"; depends=[htmlwidgets jsonlite]; }; digest = derive2 { name="digest"; version="0.6.33"; sha256="06bq696wpmn8ivbrpxw0qlcf835kc515m8jfv9zbwf8ndf42qw5y"; depends=[]; }; @@ -8638,7 +8791,7 @@ in with self; { digitalPCR = derive2 { name="digitalPCR"; version="1.1.0"; sha256="0hwqq84yr1hnvf4bygc5425887dhqjjjyy1ils71iavcal04s8pb"; depends=[]; }; digitize = derive2 { name="digitize"; version="0.0.4"; sha256="1qw4x4z9vrs79sd9b2daw668nc6nvjl4qhayfqmd87yxa2ydv6x0"; depends=[readbitmap]; }; dimRed = derive2 { name="dimRed"; version="0.2.6"; sha256="05zlkf6hjdqqr1sgw7ww9f17vjnsiqfaj9kvdvi146phh53v2zls"; depends=[DRR magrittr]; }; - dimensio = derive2 { name="dimensio"; version="0.4.1"; sha256="1bq4c8903pwzk3ibz4fkyf7m6advihwjnzzxmgpw64183w7qwnh2"; depends=[]; }; + dimensio = derive2 { name="dimensio"; version="0.5.0"; sha256="1plx27zvddh9amgkvi9y9w0h5mv15bn0ncg3mqbxnwch9gnampyy"; depends=[arkhe]; }; dimensionsR = derive2 { name="dimensionsR"; version="0.0.3"; sha256="1bic5ynqapz4mh3bcv58r00ip5s04mc8n58yhlkbrnbcqyqaca4f"; depends=[httr jsonlite]; }; dina = derive2 { name="dina"; version="2.0.0"; sha256="1sq7998xc5qhvd8clc8r32ch7axinh2a2dc7i1w2p148wv130yhd"; depends=[Rcpp RcppArmadillo rgen simcdm]; }; dinamic = derive2 { name="dinamic"; version="1.0"; sha256="0mx72q83bbwm10ayr3f1dzwr5wgz7gclw7rh39yyh95slg237nzr"; depends=[]; }; @@ -8648,25 +8801,27 @@ in with self; { dipm = derive2 { name="dipm"; version="1.9"; sha256="1hzcwjnjrhd1s31w8pnyhpfz519jvj820jyq1rdkq8qllny5jbrk"; depends=[ggplot2 partykit survival]; }; diproperm = derive2 { name="diproperm"; version="0.2.0"; sha256="0qh8zzpbsjfwh8q833n5pchb6dakqdza77ab7vmsidfbzndka11m"; depends=[dplyr DWDLargeR e1071 ggplot2 gridExtra lemon Matrix sampling SparseM usethis]; }; dipsaus = derive2 { name="dipsaus"; version="0.2.8"; sha256="1gmb5jlvxwhj2ryqgvw8mfq30h414cgsa9jf6psz4qrr5dssh98l"; depends=[base64enc cli digest fastmap future future_apply jsonlite progressr R6 Rcpp rlang rstudioapi shiny stringr]; }; - diptest = derive2 { name="diptest"; version="0.76-0"; sha256="10629vwn6r2949jjrmj5slbb5v0vnm3w0v8mrl7ws68m2sxmx2jh"; depends=[]; }; + diptest = derive2 { name="diptest"; version="0.77-0"; sha256="0cnaz1akl86vg5p0g4yl4r66407dxssfki130rrwxpbbbqakbj63"; depends=[]; }; dipw = derive2 { name="dipw"; version="0.1.0"; sha256="0nxjwiffi1ivafzha3c35kjk36ai7na0nbfl6x3gpsi2km7b84nd"; depends=[glmnet Matrix Rmosek]; }; - directPA = derive2 { name="directPA"; version="1.5"; sha256="0k66x64fi26zlm82v59ya7x6l7ba3hpa5v9dq2ykb20a8zl6spla"; depends=[calibrate plotly]; }; + directPA = derive2 { name="directPA"; version="1.5.1"; sha256="0q6g18rwz5bfg73f144lzfp0apc4jf2gibh8h3vci0fnmwfvs7gz"; depends=[calibrate plotly]; }; directlabels = derive2 { name="directlabels"; version="2023.8.25"; sha256="0p7as0yvvywbdqjpng70sdiy0xyczac4qbv534cwqxiqyx81vp8j"; depends=[quadprog]; }; directotree = derive2 { name="directotree"; version="1.0.0"; sha256="1yv703mb3fnvjxr2rrxvb8x869hbbjx4l94qbbsmy0ssknayq60y"; depends=[collapsibleTree data_tree]; }; dirichletprocess = derive2 { name="dirichletprocess"; version="0.4.2"; sha256="1b500cm5ljpvpa0axqnylcvk8x3vmva1jy179k97ggps58lmspcj"; depends=[ggplot2 gtools mvtnorm]; }; dirmcmc = derive2 { name="dirmcmc"; version="1.3.3"; sha256="117p3jvinmha7a2phcpzq38ig05kcranp15xbxqvv0cgh3c95fjr"; depends=[mcmcse]; }; dirmult = derive2 { name="dirmult"; version="0.1.3-5"; sha256="05whzhl81nyag7321hw98xa63r440s9bgj1764346yvm9bvzjqi4"; depends=[]; }; - dirttee = derive2 { name="dirttee"; version="1.0.1"; sha256="1cdl0jazj0inr1lca0ymqpr5m5ads154scnqfh1lbiaajamqr4xj"; depends=[expectreg formula_tools MASS Matrix mgcv nloptr provenance rlang survival]; }; + dirttee = derive2 { name="dirttee"; version="1.0.2"; sha256="1kmchjvm5x3gsvq2dqxr4di2l607j1ivsm75zwggaiwi8yjz9s4c"; depends=[expectreg formula_tools MASS Matrix mgcv nloptr provenance rlang survival]; }; disaggR = derive2 { name="disaggR"; version="1.0.5.1"; sha256="1ac25lp7kp5hf4h57g1w84byw8b3bk6x965w5iny09qkri3li859"; depends=[RColorBrewer]; }; + disaggregation = derive2 { name="disaggregation"; version="0.3.0"; sha256="052l1bky89a9cb6bh22lcksijbri9wdv3pw4wh51c7a8ah9zdqbr"; depends=[cowplot dplyr fmesher ggplot2 Matrix RcppEigen sf sparseMVN splancs terra tidyterra TMB]; }; disbayes = derive2 { name="disbayes"; version="1.1.0"; sha256="0dzgs048pwpl59fpnvqdra001xkwllxpkaxanwdbmzc8l1xmrwb2"; depends=[BH dplyr generics ggplot2 loo magrittr matrixStats mgcv Rcpp RcppEigen RcppParallel rstan SHELF StanHeaders tibble tidyr]; }; discAUC = derive2 { name="discAUC"; version="1.0.0"; sha256="1lw4ikrgb0w88k7gjyjv3qq0xy4h588rq7sgqk1w6zhv3qr8k34z"; depends=[dplyr glue rlang tibble]; }; + discFA = derive2 { name="discFA"; version="1.0.1"; sha256="0z455pymg48j5z8g4z6bpv8qrrwxj6gfw2p2135dpvl37jpgha42"; depends=[VGAM]; }; discSurv = derive2 { name="discSurv"; version="2.0.0"; sha256="0k585cyz02vqk4w7w20rhn6g9rspmmlbdpv7k837021iyhwwb838"; depends=[data_table functional geepack mgcv mvnfast mvtnorm ranger Rdpack rpart treeClust VGAM]; }; discfrail = derive2 { name="discfrail"; version="0.1"; sha256="1ll8c0fwwmz2yw8w582422r8bk9lr1570d7m7w2n1flrnqpqmk8j"; depends=[Matrix numDeriv survival]; }; discharge = derive2 { name="discharge"; version="1.0.0"; sha256="1hwsdrbajmpfdc9arb1pjhx2w45dy3zrba9ibcrnpyqhhr4i1c5m"; depends=[boot checkmate CircStats ggplot2 lmom]; }; disclap = derive2 { name="disclap"; version="1.5.1"; sha256="0qsycr04xz1h90jyzxwagfkc4rkc8mb9srasvhrp7grynjxlbb9f"; depends=[]; }; disclapmix = derive2 { name="disclapmix"; version="1.7.4"; sha256="1rc5kv4abx1hxgkp3vb3f247nv887vrh9l2y189blq0p6k258575"; depends=[cluster disclap MASS Rcpp RcppProgress]; }; disclapmix2 = derive2 { name="disclapmix2"; version="0.6.1"; sha256="0lqg4wvx7jf4an2x3lq9486m5741djkw8q506vbn8xlh4gxwmp3s"; depends=[cluster Rcpp]; }; - disclosuR = derive2 { name="disclosuR"; version="0.5.1"; sha256="1w6fyxwnbad4w172vv62v32ldlpiq7hr1c8qvc0fbwrhdx8ai4gc"; depends=[dplyr lubridate pdftools qdap rlang SentimentAnalysis SnowballC stringi stringr syuzhet tm zoo]; }; + disclosuR = derive2 { name="disclosuR"; version="0.6.0"; sha256="0s1j8j2jyvdr15wysi9y7yin5rz06hgd5rlqxpxz5zc8nyvar69r"; depends=[dplyr lubridate pdftools qdap rlang SentimentAnalysis SnowballC stringi stringr syuzhet tm zoo]; }; discnorm = derive2 { name="discnorm"; version="0.2.1"; sha256="05pzrrv2pwd3m15f8qxy0m2gsam3qw71bvapf061rbw1lzmr62b6"; depends=[arules copula cubature GoFKernel lavaan MASS mnormt pbivnorm sirt]; }; discord = derive2 { name="discord"; version="1.1.0"; sha256="0is9gwj09zj25hklsxgi3k7ypq2qp2yx0vir6wgpnd30wa11zs5h"; depends=[]; }; discourseGT = derive2 { name="discourseGT"; version="1.2.0"; sha256="00s7bcwc5mdra5wwf3wac6s0bj2n6ryqfx7bv2zji6fp0h4ya4wc"; depends=[dplyr GGally ggplot2 ggrepel igraph network]; }; @@ -8680,10 +8835,12 @@ in with self; { discrtr = derive2 { name="discrtr"; version="0.0.1"; sha256="03xafiy7fjxsincbwbz1y0xv372yd7cs8sbmqvv2s3glx6jdxk07"; depends=[magrittr rmdformats]; }; discursive = derive2 { name="discursive"; version="0.1.1"; sha256="14wn01p6vx1y1aprhz4r8y9dmvfxslif37nx854xnx6ncnihag57"; depends=[SnowballC stm stringr tm]; }; disdat = derive2 { name="disdat"; version="1.0-1"; sha256="1m22pichm603gn9h94vx0kmds28krlp9ax1yrsfwx12rqchcdhk7"; depends=[]; }; + diseasemapping = derive2 { name="diseasemapping"; version="2.0.5"; sha256="0zn6cp55szrfmkymaml55jf4zzvvzdfjcv1h309xr1vi1488q5yj"; depends=[terra]; }; + diseasystore = derive2 { name="diseasystore"; version="0.1"; sha256="1vnrrm1al3k6348qmd4znb7mfvfvdsjpz2fkr18q5vwh1cb7khbk"; depends=[checkmate DBI dbplyr dplyr glue lintr lubridate purrr R6 readr rlang SCDB stringr tidyr tidyselect zoo]; }; disk_frame = derive2 { name="disk.frame"; version="0.8.3"; sha256="0mkzvxbjr9iw2bmnw4s5s7glly1nnf4j83y6yzw5vg1gwqghynky"; depends=[arrow benchmarkme bigreadr bit64 crayon data_table dplyr fs fst future future_apply globals glue jsonlite pryr purrr Rcpp rlang stringr]; }; dismo = derive2 { name="dismo"; version="1.3-14"; sha256="1msc75xnc9lbnn8pivd5j4jvb1b9p3xgybfm2ak2mpb2aplz5837"; depends=[raster Rcpp sp terra]; }; disordR = derive2 { name="disordR"; version="0.9-8.1"; sha256="1m7cc2wa5g1v0dnf3crm8djnj3c3mz289ngc7nh8c7cf7mj7819z"; depends=[digest Matrix]; }; - dispRity = derive2 { name="dispRity"; version="1.7.0"; sha256="0qrmhlmbkg0jr9dhfmx46y8vh7nmydmm0sscnj4zrz7wf7myavrm"; depends=[ade4 ape castor Claddis ellipse geometry MASS mnormt phangorn phyclust scales vegan]; }; + dispRity = derive2 { name="dispRity"; version="1.8"; sha256="0hng3g5mq75b7rvdypnz816xahbfa4fgyi2n6drxma258qskyd68"; depends=[ade4 ape castor Claddis ellipse geometry GET MASS mnormt phangorn phyclust phylolm scales vegan zoo]; }; disparityfilter = derive2 { name="disparityfilter"; version="2.2.3"; sha256="0dkk3qws631mf0g02di5rsrvh5954cykysyri0g8aqgik0j9dg06"; depends=[igraph]; }; dispeRse = derive2 { name="dispeRse"; version="1.1"; sha256="08qs060zj58wb5y0ah20qcpm7qz7x99p7h5rblcfhcy2vf4pf239"; depends=[raster sf sp]; }; dispmod = derive2 { name="dispmod"; version="1.2"; sha256="16r6is0pchzc9mxpz0c44f72j76vsh3j9damalcxajrha06dkdq4"; depends=[]; }; @@ -8694,7 +8851,7 @@ in with self; { dissCqN = derive2 { name="dissCqN"; version="0.1.0"; sha256="142f4ggzwdhf2vm9kisayna9a5j17mmy2jckhjrvxh4k5dc3ssf6"; depends=[]; }; dissever = derive2 { name="dissever"; version="0.2-3"; sha256="1lgs5nmv3lpm4gsryxvcwiwibvvg9flv23q8maisp77x49c18qcp"; depends=[boot caret dplyr foreach magrittr plyr raster sp viridis]; }; distTails = derive2 { name="distTails"; version="0.1.2"; sha256="10p7rfqfkhcwq10lhz3cq9i4k1jdccks4y3791lajljsxz5jrca4"; depends=[ercv gsl MASS]; }; - distances = derive2 { name="distances"; version="0.1.9"; sha256="1gbwi8x2490wliks7q3gm0bz11mgjpkc7q8al77brllg70r3lmaq"; depends=[]; }; + distances = derive2 { name="distances"; version="0.1.10"; sha256="0rni8naaryvhmldk8zflwlb4kdrvjfcmfb0j5nxfm4yndqad557b"; depends=[]; }; distanceto = derive2 { name="distanceto"; version="0.0.3"; sha256="0xsqvmakys75rz11w7mkhs7674lzgz2ml9bwbkydq3lkrg14hyww"; depends=[geodist nabor sf]; }; distantia = derive2 { name="distantia"; version="1.0.2"; sha256="12d6xzhcxs3xxyj82ih6chrr638siy45gna1s22vhnqvjd5jixc6"; depends=[arrangements data_table doParallel fields foreach iterators plyr RColorBrewer viridis]; }; distcomp = derive2 { name="distcomp"; version="1.3-3"; sha256="01h8cczkb0vb6560rh4czvajwa7gbgp41pl2b5xw7a68cbjizv8n"; depends=[digest dplyr gmp homomorpheR httr jsonlite magrittr R6 rlang shiny stringr survival]; }; @@ -8716,7 +8873,7 @@ in with self; { distrSim = derive2 { name="distrSim"; version="2.8.1"; sha256="1z6x3bsxp9mrnnygx1048v4iadjs8kkqywjclsixmngb0nm69h61"; depends=[distr setRNG startupmsg]; }; distrTEst = derive2 { name="distrTEst"; version="2.8.1"; sha256="0s22g7sf2q0kj8qcl09vq8prnahmm3iqc0v66kzm6hmhc314k509"; depends=[distrSim setRNG startupmsg]; }; distrTeach = derive2 { name="distrTeach"; version="2.9.0"; sha256="0jf1v4nb900z7jcy3d34z86ykrn52xnimir1l0iv78dkh1kvwsqn"; depends=[distr distrEx startupmsg]; }; - distreg_vis = derive2 { name="distreg.vis"; version="1.7.4"; sha256="1wz1vfjcnsn1nd5hqw010is39nn2k0226hczg006jvgfr400hx4y"; depends=[bamlss betareg formatR gamlss gamlss_dist ggplot2 magrittr rhandsontable shiny]; }; + distreg_vis = derive2 { name="distreg.vis"; version="1.7.5"; sha256="1phl1nj1l69l6aj9hsv0yqllvhh6msv2ss9la8zikl3m2s0f6ymw"; depends=[bamlss betareg formatR gamlss gamlss_dist ggplot2 magrittr rhandsontable shiny]; }; distributional = derive2 { name="distributional"; version="0.3.2"; sha256="1y08s301mxz7c54lxa1j0zzbsrgphxv5hsyam3jswcw274rxd0y8"; depends=[digest farver generics ggplot2 lifecycle numDeriv rlang scales vctrs]; }; distributions3 = derive2 { name="distributions3"; version="0.2.1"; sha256="19c8s5qshqzhvl01c7nd9912vyy0nnmc7rfg8iih2jlcpqrdql86"; depends=[ellipsis ggplot2 glue]; }; distributionsrd = derive2 { name="distributionsrd"; version="0.0.6"; sha256="0ykzxcxh5l9l5z3546iqlllryw2xyixz1hiynx19k8bsn8k7dxyp"; depends=[flexmix modeltools Rdpack]; }; @@ -8731,33 +8888,33 @@ in with self; { diveR = derive2 { name="diveR"; version="0.1.2"; sha256="0n0ldc3k0ryr20794kvqxpnk8m3qc13lkl6rxw043pkwbjqj7291"; depends=[cli crayon ggmulti loon loon_data loon_ggplot loon_shiny loon_tourr rstudioapi zenplots]; }; diverge = derive2 { name="diverge"; version="2.0.6"; sha256="0rgmzcy2kk1bc6v27qcj4ckyvidzvldqx3cz1prccq5bhw2m8cdz"; depends=[truncnorm]; }; diverse = derive2 { name="diverse"; version="0.1.5"; sha256="10kmx3qv58xhqs1icsxqq0y0cm8y2hx9ysb65brd3hhg33alzvk3"; depends=[foreign proxy reshape2]; }; - diversitree = derive2 { name="diversitree"; version="0.9-20"; sha256="0lm098ysk6np4dy1cifbhd85jd1f1iz4bqhgzlcx7x8qnhh3zc1c"; depends=[ape deSolve Rcpp subplex]; }; + diversitree = derive2 { name="diversitree"; version="0.10-0"; sha256="1xl2swbmgpni2y2divl29xh702b88kxgcswa47g62ny59gh2fdn1"; depends=[ape deSolve Rcpp subplex]; }; diversityForest = derive2 { name="diversityForest"; version="0.4.0"; sha256="1yp9lwr5sj8mv1sxrrjsx00m2aq02xcs3q06v51h29g686rdij0f"; depends=[gam ggplot2 ggpubr MapGAM Matrix nnet RColorBrewer Rcpp RcppEigen rlang rms scales sgeostat survival]; }; divest = derive2 { name="divest"; version="0.10.3"; sha256="1blg70i3v7269jlgrzdqdvi3f64ly8zhzmsl2fl3jzf3nigxbkhp"; depends=[Rcpp RNifti]; }; divo = derive2 { name="divo"; version="1.0.1"; sha256="06c4kjl6llvvdr2gk480jcmj2abmqwph7x4vk5nflxm7piimvg7v"; depends=[cluster]; }; divraster = derive2 { name="divraster"; version="1.0.4"; sha256="0w603c5czvzqj0ydbmmxy9xn8p0r25c6i5m90219p6jv4nb1afrz"; depends=[BAT SESraster terra]; }; divseg = derive2 { name="divseg"; version="0.0.5"; sha256="0fbh5qpjszpmkrvb2p7f9rbbc4zj1dchhwk28zclnbxazlg116fs"; depends=[dplyr magrittr rlang sf tibble tidyselect units]; }; - dixon = derive2 { name="dixon"; version="0.0-8"; sha256="1mflg9mpcidjq1ljgzqdwp6x0g930v9y5jgma1qxi5c5l3irkvg3"; depends=[spatstat spatstat_geom splancs]; }; + divvy = derive2 { name="divvy"; version="1.0.0"; sha256="03s76pkywxcx6kkdq7dpa0l2rvhwibzp48sb9mqbbhf713a621pi"; depends=[iNEXT Rdpack sf terra units vegan]; }; + dixon = derive2 { name="dixon"; version="0.0-9"; sha256="1lgmhg3d0f59x5mfa6j9cs009yqxyzfzv7jfz5d93jrbs0p7glnk"; depends=[spatstat spatstat_geom splancs]; }; dixonTest = derive2 { name="dixonTest"; version="1.0.4"; sha256="0gz39s1z987bg56vwrpcs14wzyf7p07s7l7z9napz0i38564wsdq"; depends=[]; }; - diyar = derive2 { name="diyar"; version="0.4.3"; sha256="1c7nq3z3p282a75mgv8w2y4dyhbny26nazs0dmnj233l4mf507pz"; depends=[ggplot2 rlang]; }; + diyar = derive2 { name="diyar"; version="0.5.1"; sha256="0md7hrjcla4z3ck9kb387x4cmf8ca7sm9qw4a9mby9xj6abkd8id"; depends=[ggplot2 rlang]; }; dkDNA = derive2 { name="dkDNA"; version="0.1.1"; sha256="0ycyzn5bmhjl5idp0lndffkninpm9n23wrkrzi59ac8z8ghsnhf4"; depends=[]; }; dkanr = derive2 { name="dkanr"; version="0.1.3"; sha256="1zic7qhwq3s9w70zi1f6qyf7pzm69k5a1p5fd4n3z4nbga54njxd"; depends=[assertthat dplyr httr jsonlite purrr stringr tibble]; }; dlbayes = derive2 { name="dlbayes"; version="0.1.0"; sha256="058kkh67npai2ffrjdpjn4pzj8f233znl16nj6yx8wz8lkb17cb0"; depends=[expm GIGrvg glmnet LaplacesDemon MASS]; }; dlib = derive2 { name="dlib"; version="1.0.3.1"; sha256="1rchl4f3zj0azz8d4n139daba2gz6vnm60jq45vgc9gphk2mrnnb"; depends=[Rcpp]; }; dlm = derive2 { name="dlm"; version="1.1-6"; sha256="0mxfakryagyg2idjhw1ydp4xqk57s3z17cv69hj16lisx8q43pc9"; depends=[]; }; dlnm = derive2 { name="dlnm"; version="2.4.7"; sha256="0mbww28n95vnd6wrn1b4mfsdvnyffa8mr6ws4jqmqdc23nydl9p4"; depends=[mgcv nlme tsModel]; }; - dlookr = derive2 { name="dlookr"; version="0.6.2"; sha256="1v5wqbhpgh6fvcw68207x36fh4df007shrjwh1g4xpwxd2rhi3xs"; depends=[dplyr ggplot2 gridExtra hrbrthemes htmltools kableExtra knitr mice pagedown partykit purrr reactable rlang rmarkdown shiny showtext sysfonts tibble tidyr tidyselect]; }; dlr = derive2 { name="dlr"; version="1.0.1"; sha256="13gr8rk8igbypq9mg00pyk2pjczxr1ghkj5287gijxnxch7zdknc"; depends=[digest fs rappdirs rlang]; }; dlsem = derive2 { name="dlsem"; version="2.4.6"; sha256="1h3bwqqpfjkl41b2mbfhsj0pi9kri0h0i28wiid6arjrmm87nsf8"; depends=[graph Rgraphviz]; }; dlstats = derive2 { name="dlstats"; version="0.1.7"; sha256="1qc7gp2glkbhnblqckz3l7jmlsarf3jlsp6cqm4wm0s87z038r9a"; depends=[ggplot2 jsonlite magrittr RColorBrewer scales]; }; - dm = derive2 { name="dm"; version="1.0.6"; sha256="0d6b2ckwp7097x7fjb8337s287fm10c6mmslkvdxph4iirz04vpd"; depends=[backports cli DBI dplyr glue igraph lifecycle magrittr memoise pillar purrr rlang tibble tidyr tidyselect vctrs]; }; + dm = derive2 { name="dm"; version="1.0.9"; sha256="1xrsmdnkq52wp56f9j3506vy9xfqr8hcy6xabcdbj065kd3zpr13"; depends=[backports cli dplyr glue igraph lifecycle memoise purrr rlang tibble tidyr tidyselect vctrs]; }; dma = derive2 { name="dma"; version="1.4-0"; sha256="003snr09hazszwqnvjrbv8vyz6ihgcfcfhrlshg451dddn920615"; depends=[MASS]; }; dmai = derive2 { name="dmai"; version="0.4.0"; sha256="0ma89jl0l598sffpikvjj40f2djjcnjq29k6y1bav4dm2g51qgmq"; depends=[dplyr ggplot2 magrittr stringr tibble tidyr]; }; dmbc = derive2 { name="dmbc"; version="1.0.1"; sha256="08kw193792v20qh9c8n16jx2q4rrj5lar3zbp6q8rw57mim962lb"; depends=[abind bayesplot coda ggplot2 ggrepel MCMCpack modeltools Rcpp RcppArmadillo RcppProgress robustbase robustX]; }; dmetatools = derive2 { name="dmetatools"; version="1.1.1"; sha256="0n62lfga8br3p3vn10rs56mbrbsrr7b6m8cb15za52nm2qn9m3a5"; depends=[mada MASS]; }; dml = derive2 { name="dml"; version="1.1.0"; sha256="0z1dalgxh5nhrac49vh60d5awzjylc8b8mn5fk379c324milm59l"; depends=[lfda MASS]; }; dmlalg = derive2 { name="dmlalg"; version="1.0.2"; sha256="1ixjpalg3q0wnddrli6v66kky3pxf90sjgiia8jhk4nds0h58a72"; depends=[glmnet lme4 matrixcalc randomForest]; }; - dmm = derive2 { name="dmm"; version="2.1-8"; sha256="1iplqxm6qhjf55xzs96534p81z38ancw27s3p621labm21x9s9qr"; depends=[MASS Matrix nadiv pls robustbase]; }; + dmm = derive2 { name="dmm"; version="2.1-9"; sha256="1gca90yh3lysp4rqxa8dp7d5mni57n1cj5q99y04j9aly3b4b0gb"; depends=[MASS Matrix pls robustbase]; }; dmri_tracking = derive2 { name="dmri.tracking"; version="0.1.0"; sha256="0aij0n5p6cp75r5b3bfpmhnmz2nixbb4kwacixg66g6kilwj3sis"; depends=[rgl]; }; dmtools = derive2 { name="dmtools"; version="0.2.6"; sha256="0z77whal18sxmfqalv39w85vnc84c838yh3dp144v7w198n095fy"; depends=[dplyr httr lubridate magrittr progress purrr readxl tibble tidyr]; }; dmutate = derive2 { name="dmutate"; version="0.1.3"; sha256="1dxx4v9fg0cd2m5lwk3j6n9g6n9zqr7rs75yiz3m3q8cpw1pjqpk"; depends=[dplyr MASS]; }; @@ -8767,8 +8924,8 @@ in with self; { dng = derive2 { name="dng"; version="0.2.1"; sha256="0yi1fs4yvlsy3j128l7s5kwq8mhdd5fr74y2bzj7cjrxi7wgz2hg"; depends=[Rcpp]; }; dnr = derive2 { name="dnr"; version="0.3.5"; sha256="16s06jvwmvhxgvrmfav1xfszjrn7j2cm4jw5xyx6w5lb5434kzcq"; depends=[arm ergm glmnet igraph network sna]; }; do = derive2 { name="do"; version="2.0.0.0"; sha256="16c6ksdas678k1285vk526ga3qkfb658nq4j5z9safjkyl1d5lrp"; depends=[crayon data_table desc httr openxlsx plyr reshape2 rstudioapi rvest stringr tidyr tidyselect tmcn usethis xml2]; }; - doBy = derive2 { name="doBy"; version="4.6.19"; sha256="14hvbhf9zamqkjhr9jd8zjpm9xlc8hwqj04gy6ln32n2hzqqqr6v"; depends=[broom Deriv dplyr ggplot2 magrittr MASS Matrix microbenchmark pbkrtest tibble]; }; - doFuture = derive2 { name="doFuture"; version="1.0.0"; sha256="1pxwpfmxswbsd1f2ifj9kdq9hi9q0x2wwv2kv0xq178ymmywi2sz"; depends=[foreach future future_apply globals iterators]; }; + doBy = derive2 { name="doBy"; version="4.6.20"; sha256="08nsl9xzyi2k7xkwa9mn91fn77ji0z9z5lm388pfdmydbfmpy2ks"; depends=[broom Deriv dplyr ggplot2 magrittr MASS Matrix microbenchmark pbkrtest tibble]; }; + doFuture = derive2 { name="doFuture"; version="1.0.1"; sha256="1avv5kv1c43gmvbh5iwxlwk7yl6prndpcgy0blkwarl3nsgcq4cm"; depends=[foreach future future_apply globals iterators]; }; doMC = derive2 { name="doMC"; version="1.3.8"; sha256="18qrcvqwm4cclvk8spvyi281y8prwzivj52xmzk1l9a82j2ny65j"; depends=[foreach iterators]; }; doMPI = derive2 { name="doMPI"; version="0.2.2"; sha256="0ahwm17p3gq1yvc8v6sr6sb8z7i6zws8d1pf46qynl0gd4amg938"; depends=[foreach iterators Rmpi]; }; doParallel = derive2 { name="doParallel"; version="1.0.17"; sha256="1mxbg2qqda1775vb4s26gz27p5n91lljgjmlqxq4sras22njasmr"; depends=[foreach iterators]; }; @@ -8779,7 +8936,7 @@ in with self; { dobson = derive2 { name="dobson"; version="0.4"; sha256="0xfn7s3wzrv1md40bdjrnjfiqyxg5c6lrcpnvayjdgrhxq161hhq"; depends=[]; }; doc2concrete = derive2 { name="doc2concrete"; version="0.5.6"; sha256="11dv5vcgk5f24f5fr79js9slmwbzg6c49ax2gbmzqmkgscd60fwq"; depends=[english glmnet quanteda SnowballC stringi stringr textstem tm]; }; doc2vec = derive2 { name="doc2vec"; version="0.2.0"; sha256="0249hm0103kxxsi4gks4h20wf6p00gbrk9jf8c148mbja1l56f6v"; depends=[Rcpp]; }; - dockerfiler = derive2 { name="dockerfiler"; version="0.2.1"; sha256="0nmxm73djmrg22iyzylj9wng1hsg56pnr87vspywf8jv4q2vpjvp"; depends=[attempt cli desc fs glue jsonlite pak pkgbuild R6 remotes renv usethis]; }; + dockerfiler = derive2 { name="dockerfiler"; version="0.2.2"; sha256="0j5j93hbqgc9qscadldk8j2knx87q2l91fwsjhh792jflvwxgfzi"; depends=[attempt cli desc fs glue jsonlite memoise pak pkgbuild R6 remotes usethis]; }; docknitr = derive2 { name="docknitr"; version="1.0.1"; sha256="1mhdjv6yznzyx911f0m3m0i7jlzj7h12ikkxb9b6zj68bdplv30b"; depends=[knitr rstudioapi sys]; }; doconv = derive2 { name="doconv"; version="0.3.2"; sha256="1ppzryd1kv5v96b2dwfzfy6cj7wx5sx8insj06gf2m2f442c8aph"; depends=[locatexec magick pdftools processx]; }; docopt = derive2 { name="docopt"; version="0.7.1"; sha256="1zxhwizs916qm5by7nfslqnarl2q5202xc2azlhrnzk0wj3khiwz"; depends=[]; }; @@ -8807,11 +8964,12 @@ in with self; { doseminer = derive2 { name="doseminer"; version="0.1.2"; sha256="0y03k14adyqf0cyzqrr4rk47dabwgzzjkxbf11a5b8xlyy19mjr1"; depends=[magrittr stringr]; }; dosresmeta = derive2 { name="dosresmeta"; version="2.0.1"; sha256="0qdalzdk7q4wx3vl5f3i64m8cb7vhi4pqzghar32j0a7l6gla04z"; depends=[mvmeta]; }; dostats = derive2 { name="dostats"; version="1.3.3"; sha256="0nq5965rlpvad8wyz3yr98wxy4w7jb4v4xfbbfa6c2vnc6w7w884"; depends=[]; }; - dotCall64 = derive2 { name="dotCall64"; version="1.1-0"; sha256="1ibh2f2vcv30k1c919diw6qdmhxmvkl83k3396vy3xigbcny711l"; depends=[]; }; + dotCall64 = derive2 { name="dotCall64"; version="1.1-1"; sha256="06y9y9m5prjvqlprqpanbamgr6jkw27wj7nnha5ayyn08zbxgf11"; depends=[]; }; dotenv = derive2 { name="dotenv"; version="1.0.3"; sha256="0dclwqg2hxdly8z3cckcskcll3dfax6g14h1xzjzdfwahhrbr5wb"; depends=[]; }; dotgen = derive2 { name="dotgen"; version="0.1.0"; sha256="12dvn52ggmkj2q6whi8s2hh9fpg7jcg20bgx32jxzh4cb1zxnksz"; depends=[mvtnorm]; }; dotprofile = derive2 { name="dotprofile"; version="0.0.1"; sha256="10vm8s1sk4i2930zzswgwy1y873x8byfr7xfb8xq6cdk9ci7l741"; depends=[cli R6]; }; dots = derive2 { name="dots"; version="0.0.2"; sha256="0g4wvb6qp66dm0pfckjr9xgij58dzlji2iq45m5cz98jzivfd9gm"; depends=[dplyr ggplot2 magrittr purrr rlang rmapshaper sf sp terra]; }; + dotsViolin = derive2 { name="dotsViolin"; version="0.0.1"; sha256="0pyxs899429qsyhnm1n36n06wxwrk1i20qd9pyz62n4n6x706ajq"; depends=[dplyr ggplot2 gridExtra gtools lazyeval magrittr rlang scales stringr tidyr tidyselect]; }; dotwhisker = derive2 { name="dotwhisker"; version="0.7.4"; sha256="0awqdxb98vjafvjvx6fkmlyy6c2lp52la2b69964bawx5lgwj16b"; depends=[dplyr ggplot2 ggstance gtable margins parameters purrr rlang stringr]; }; doubcens = derive2 { name="doubcens"; version="1.1"; sha256="1hn65n67by3xqbcnaf5jja5pli0g6wpbbz2sfzd7i2nms7kiywhp"; depends=[]; }; double_truncation = derive2 { name="double.truncation"; version="1.7"; sha256="0hrb1qli7i4jhc705rb02zbq2nyk0i406bb8gpy4jrzygjjbq3g0"; depends=[]; }; @@ -8819,21 +8977,21 @@ in with self; { doudpackage = derive2 { name="doudpackage"; version="2.1.0"; sha256="02zr80ps7x5bq388px9jfpf3b5krvba63ydrsi9big2v5x73hfv9"; depends=[dplyr kableExtra purrr stringi tibble tidyr]; }; downlit = derive2 { name="downlit"; version="0.4.3"; sha256="1gdk6rj3539vnm979spd8py0rpvlaniyiy336abi39g8xjcbw3vc"; depends=[brio desc digest evaluate fansi memoise rlang vctrs withr yaml]; }; downloader = derive2 { name="downloader"; version="0.4"; sha256="1axggnsc27zzgr7snf41j3zd1vp3nfpmq4zj4d01axc709dyg40q"; depends=[digest]; }; - downloadthis = derive2 { name="downloadthis"; version="0.3.2"; sha256="121rhn6806i2067wi6indny74r11dwgv7vvm6cfpcg6bklrfx2v7"; depends=[base64enc bsplus fs ggplot2 htmltools magrittr mime readr writexl zip]; }; + downloadthis = derive2 { name="downloadthis"; version="0.3.3"; sha256="14c85cradmm187jzwf3njgshmzq53xr4dla39dkxmhnw07mgdw4l"; depends=[base64enc bsplus fs ggplot2 htmltools magrittr mime readr writexl zip]; }; downscale = derive2 { name="downscale"; version="5.0.0"; sha256="1rcmn5f30l004rp8a7pmn0w5izsy31n9lwsk3sgj01fjzk0333wc"; depends=[cubature minpack_lm Rmpfr sf terra]; }; downsize = derive2 { name="downsize"; version="0.2.3"; sha256="0yx62nx5ga835ng9gwrkwivxjhjrkygdldnd1hswc6wnvfs1qz8s"; depends=[magrittr R_utils]; }; - dowser = derive2 { name="dowser"; version="2.0.0"; sha256="1phgpfjiy10v9qd2r5qssiaqa1g4km7ii7dzpzq3rrgd1c2nac59"; depends=[alakazam ape Biostrings dplyr ggplot2 ggtree gridExtra markdown phangorn phylotate RColorBrewer rlang shazam stringr tidyr tidyselect]; }; - dparser = derive2 { name="dparser"; version="1.3.1-10"; sha256="039yjgfw7hqw56cn799fqyf60if72y9q2pmpjh126a3s47mygifx"; depends=[digest]; }; + dowser = derive2 { name="dowser"; version="2.1.0"; sha256="1wv3x2aiqdmkf2jsgnphg1nwh3643jv756qb2llaz0nd4dy0kws7"; depends=[alakazam ape Biostrings dplyr ggplot2 ggtree gridExtra markdown phangorn phylotate RColorBrewer rlang shazam stringr tidyr tidyselect]; }; + dparser = derive2 { name="dparser"; version="1.3.1-11"; sha256="1xb4gfqcb4598wry3i1mfp9a3rjy74z2wy3ga9daaam155vcdbp8"; depends=[digest]; }; dpcc = derive2 { name="dpcc"; version="1.0.0"; sha256="1f4c68bvkwg82k1zanjhqqika2bfjv83mbr2khl5lhvfjwvpi1m0"; depends=[Rcpp]; }; - dplR = derive2 { name="dplR"; version="1.7.5"; sha256="0w0ljanw4ayzmm1whga6p50iikyg7ijc02j70m9s7263vybj1n2r"; depends=[boot digest lattice Matrix matrixStats plyr png R_utils signal stringi stringr XML]; }; - dplyr = derive2 { name="dplyr"; version="1.1.3"; sha256="0hhpzv66rqz7z8vdryzjdkp4flmjvzxrx1pwpxnbmjqgvd3s4hv8"; depends=[cli generics glue lifecycle magrittr pillar R6 rlang tibble tidyselect vctrs]; }; + dplR = derive2 { name="dplR"; version="1.7.6"; sha256="0p2mld1hymxn7gij4hx62r03kchvnyfcc27ckgdgznznihbf185z"; depends=[boot digest lattice Matrix matrixStats plyr png R_utils signal stringi stringr XML]; }; + dplyr = derive2 { name="dplyr"; version="1.1.4"; sha256="1jsq8pj12bngy66xms486j8a65wxvyqs944q9rxkiaylsla08wyg"; depends=[cli generics glue lifecycle magrittr pillar R6 rlang tibble tidyselect vctrs]; }; dplyrAssist = derive2 { name="dplyrAssist"; version="0.1.0"; sha256="1lqizh70b1apyr4578917gv6s0i7p84ak96a57kvwipmh36a4ywn"; depends=[DT magrittr miniUI plyr rstudioapi shiny shinyAce shinyWidgets stringr tidyr tidyverse]; }; dpmr = derive2 { name="dpmr"; version="0.1.9"; sha256="1cnjywkvjb4fhbf4shjmsrq47f1fg2x21hcm1q5512bm0wg9i6jd"; depends=[digest httr jsonlite magrittr rio]; }; dppmix = derive2 { name="dppmix"; version="0.1.1"; sha256="1gq51kix0jln25gr6bffzdy24fhn6cd3gmyl3jlmvqvni4vwswy7"; depends=[mvtnorm]; }; dprint = derive2 { name="dprint"; version="0.0.4"; sha256="13bq6yjlp5p5rcsz684rqcigp42xnz3p5phnqmrhzm874gfzm8rj"; depends=[]; }; dprop = derive2 { name="dprop"; version="0.1.0"; sha256="0fvghjblm6giq72qqn20qwlw4ki9lrxagsy0jjbiinf51rdrhc8y"; depends=[extraDistr VaRES]; }; dpseg = derive2 { name="dpseg"; version="0.1.1"; sha256="19k7w6ln72qriwxdjx9a9cxpxbkqqja69r17zpwxz6qkw60ly4z9"; depends=[Rcpp]; }; - dqrng = derive2 { name="dqrng"; version="0.3.1"; sha256="0vmrbnix05a9h1bc4b7d999qkzkk63i1arzyblyhmvydv4m8cc72"; depends=[BH Rcpp sitmo]; }; + dqrng = derive2 { name="dqrng"; version="0.3.2"; sha256="171y7487flla0vqxmzvf9nls7vn046vplcgzvyiva3d418hwl0nd"; depends=[BH Rcpp sitmo]; }; dr = derive2 { name="dr"; version="3.0.10"; sha256="0dmz4h7biwrn480i66f6jm3c6p4pjvfv24pw1aixvab2vcdkqlnf"; depends=[MASS]; }; dr4pl = derive2 { name="dr4pl"; version="2.0.0"; sha256="1nmy8mxxrmwzw826wvnn4rrm64xal9jr160yqiqj41zmb241q4b6"; depends=[generics ggplot2 glue Matrix Rdpack rlang tensor]; }; dracor = derive2 { name="dracor"; version="0.2.6"; sha256="1zs7xfjdx3anrvslfkx483k0swac7rq8y7n7gaws6ap94qy4xrk8"; depends=[Rcpp]; }; @@ -8841,7 +8999,7 @@ in with self; { dragonking = derive2 { name="dragonking"; version="0.1.0"; sha256="01b01wd1s2b8sa9f0kfbf2pbzhaqra7xxskigqh3vlj389xqm1id"; depends=[]; }; dragracer = derive2 { name="dragracer"; version="0.1.7"; sha256="0ka3p72c3brrla7dawm4anyr073kgiy39ip5bdig9888gwiwjccq"; depends=[]; }; dragulaR = derive2 { name="dragulaR"; version="0.3.1"; sha256="1cw5v7m1b4pxsizsjb3zdzhydxj577p6q5fcjklsvpzmiixzlyav"; depends=[htmlwidgets shiny shinyjs]; }; - drake = derive2 { name="drake"; version="7.13.6"; sha256="1qn6h22l0giz6w6bsi77d5skxp0y5dgmhb7xl8a5nyjajlxm7hd2"; depends=[base64url digest igraph rlang storr tidyselect txtq vctrs]; }; + drake = derive2 { name="drake"; version="7.13.8"; sha256="0ijhr4wn06nr10l5x3d0my1wdlhcr4gbr4dq6swqjdgc8kylzanl"; depends=[base64url digest igraph rlang storr tidyselect txtq vctrs]; }; drape = derive2 { name="drape"; version="0.0.1"; sha256="0y4y6vvskizghqf78d1vr0skac0ks3yb83m9fgn8i3wmgqrhws19"; depends=[]; }; drat = derive2 { name="drat"; version="0.2.4"; sha256="13v7dj2688ix6j9nzhvf8q9ynfihwzkppfdjkis6q1r5m4nikya3"; depends=[]; }; draw = derive2 { name="draw"; version="1.0.0"; sha256="0kbz8rcgygl4fhmljzaan5jl7wjvfljcaykm7q9lw9s6m78p06gz"; depends=[]; }; @@ -8853,7 +9011,7 @@ in with self; { drcte = derive2 { name="drcte"; version="1.0.30"; sha256="0gpzpmk5v1lr03gl710kp4d4ldfskjr5s66wcl00abg3kz8jpixn"; depends=[dplyr drc lmtest MASS mclust multcomp nor1mix plyr sandwich survival tidyr]; }; drda = derive2 { name="drda"; version="2.0.3"; sha256="1s3d0hpxl47rirsig5gbs0q3i6dj2hjzza3655381fla5n0yx9ap"; depends=[]; }; dreamer = derive2 { name="dreamer"; version="3.1.0"; sha256="10yvdg5nkw4nawy9hdqyrsgh01xga8l3hn3qi1sbjzniv7903v7d"; depends=[coda dplyr ellipsis ggplot2 purrr rjags rlang rootSolve tidyr tidyselect]; }; - dreamerr = derive2 { name="dreamerr"; version="1.3.0"; sha256="1wpfc87vl8x2z1x1wr3lab0v9d0ddxhhjh8fk10baid77ypxq0gf"; depends=[Formula]; }; + dreamerr = derive2 { name="dreamerr"; version="1.4.0"; sha256="11va0bwi8r3qv7cw5zjci0i7876lh02bzf5rdfn6sfv223yllpiy"; depends=[Formula stringmagic]; }; drf = derive2 { name="drf"; version="1.1.0"; sha256="13b31rynknzirnvgygs1ar5968xdh8dhg60ibn0g359gnzadn7ad"; depends=[fastDummies Matrix Rcpp RcppEigen transport]; }; drgee = derive2 { name="drgee"; version="1.1.10"; sha256="0hy7887mvlxh73zk2yzp46bqakq924n940j21lw25jgygmzz1176"; depends=[data_table nleqslv Rcpp RcppArmadillo survival]; }; drhur = derive2 { name="drhur"; version="1.1.0"; sha256="06zy2acgmhfc1criid35ci1802zl77qcif2vrhn0w8syixsbjiq8"; depends=[learnr]; }; @@ -8867,7 +9025,7 @@ in with self; { drought = derive2 { name="drought"; version="1.1"; sha256="1i064bg7b29agnj2cq5gl61z12xx1a3lkzfg31sly3alzpvciwr9"; depends=[copula corrplot]; }; drpop = derive2 { name="drpop"; version="0.0.3"; sha256="1gh0w1a59070g9mmck4fp9591vfw23c5nlj3jrkxwarp4vfy1dqp"; depends=[dplyr gam ggplot2 janitor nnet nnls ranger reshape2 stringr SuperLearner tidyr]; }; drtmle = derive2 { name="drtmle"; version="1.1.2"; sha256="0qvdxzvpi7a66gx61v6fj31zy4y5cid18g4qgv5lir7qc74rbbx0"; depends=[future_apply np SuperLearner]; }; - drugDemand = derive2 { name="drugDemand"; version="0.1.0"; sha256="0gipkxa07l569vw3h90k571ckabw1q5c2yyj621jr1svlzv1dr09"; depends=[doParallel doRNG dplyr erify eventPred foreach icenReg mvtnorm nlme plotly pscl purrr Rcpp rlang survival tictoc]; }; + drugDemand = derive2 { name="drugDemand"; version="0.1.2"; sha256="161d0ix5sn00j4w8kg8s02yvk6gpjvailivjh873rifsiyx50r9d"; depends=[doParallel doRNG dplyr erify eventPred foreach icenReg L1pack MASS mvtnorm nlme plotly pscl purrr Rcpp rlang survival tictoc]; }; drugprepr = derive2 { name="drugprepr"; version="0.0.4"; sha256="07401dqw4krqh3rv7y13526n0xjdlaw14gcxwranksjchmqjd3ij"; depends=[DescTools doseminer dplyr purrr rlang sqldf stringr tidyr]; }; drumr = derive2 { name="drumr"; version="0.1.0"; sha256="09xi3sf424bpq10fq25j209dylfbi1lfd911r44ffadkxzvp5p1s"; depends=[audio stringr]; }; ds = derive2 { name="ds"; version="4.0"; sha256="1iic5fb27cnhsa83zg28hydrhzc01i9z0711xvk95c3gv7mbfp2p"; depends=[]; }; @@ -8878,18 +9036,22 @@ in with self; { dscore = derive2 { name="dscore"; version="1.8.0"; sha256="0dyhhrdkca0091nk0a70ckk9187g5rfzz1bqw666hv40yzq0sk97"; depends=[dplyr Rcpp RcppArmadillo stringr tidyr tidyselect]; }; dsdp = derive2 { name="dsdp"; version="0.1.1"; sha256="0n0cyqzwv97wqq8m8a3qr6bg2p07ky9dm6hmlxwd2ggxrn3kmxv8"; depends=[ggplot2 rlang]; }; dse = derive2 { name="dse"; version="2020.2-1"; sha256="170rxrniszs8h59ah4mn4mz8d7kzix4g3vlz4icd8w6bl40c6ykc"; depends=[setRNG tfplot tframe]; }; + dsem = derive2 { name="dsem"; version="1.0.0"; sha256="11ba06rj31xqppdci3114nppsbmw86f0fbm5xjndi4iys35ar0s9"; depends=[igraph Matrix RcppEigen sem TMB]; }; dsfa = derive2 { name="dsfa"; version="2.0.2"; sha256="1fsq3ydphgi9b97fr92y2d5fc34rf4raff6ki1d3aqn210h9d53z"; depends=[copula gratia mgcv Rcpp RcppArmadillo Rdpack]; }; + dsims = derive2 { name="dsims"; version="1.0.4"; sha256="0mqnpcs9bijkc0l6x6qssr527rh4j4ignlgvgrqxqgii3ikdx92j"; depends=[Distance dplyr dssd ggplot2 gridExtra mgcv mrds purrr rlang rstudioapi sf]; }; dslabs = derive2 { name="dslabs"; version="0.7.6"; sha256="0076g4z3g5wqi3gbn18959lzhgi4ym9zbbg57rkd4qq1fxd2v5dn"; depends=[ggplot2]; }; - dslice = derive2 { name="dslice"; version="1.2.0"; sha256="1k9hxpmr563p8bpd9m991lx5ig366mzk9j1lzldci9pq4jiayin1"; depends=[ggplot2 Rcpp scales]; }; + dslice = derive2 { name="dslice"; version="1.2.2"; sha256="0h34bnji7ll2zh79d1yilj908mjgf27yify2kl2gapj9k499zc2v"; depends=[ggplot2 Rcpp scales]; }; dsm = derive2 { name="dsm"; version="2.3.3"; sha256="159hlllbp4qy5dxmxgsjcl2ksflq7z7v1ra5d7piyanm9c632q8a"; depends=[ggplot2 mgcv mrds nlme numDeriv plyr statmod]; }; dsmisc = derive2 { name="dsmisc"; version="0.3.3"; sha256="19760hcb5154rayhj72r48r7glh2qyaf178zkxplywmsw338kws4"; depends=[Rcpp stringr]; }; dsmmR = derive2 { name="dsmmR"; version="1.0.2"; sha256="05hbwdycbz58mn01xl6958w03z4adjb00bgl1f9sqbhgy4x23397"; depends=[DiscreteWeibull]; }; dsos = derive2 { name="dsos"; version="0.1.2"; sha256="1qv44wj1dvng1m4lkscn9yylhxsr8ck46wv54vjy9px4g7rmjaq5"; depends=[data_table future_apply ggplot2 scales simctest]; }; dsrTest = derive2 { name="dsrTest"; version="1.0.0"; sha256="1nfwcab6p7swki8d2j2dywj93xidkjqcq84majvq90yabx353jd3"; depends=[asht exactci loglognorm]; }; - dst = derive2 { name="dst"; version="1.5.1"; sha256="08cw09hf5jx1qfmrqmhm4713gzq21p0ss3nx7qrs92mpsvprq3yc"; depends=[]; }; + dssd = derive2 { name="dssd"; version="1.0.2"; sha256="1nbr8mdva6g7p9mrbbg6g116vrvny07yvkyklgjbw79vrj7lfgy3"; depends=[ggplot2 sf]; }; + dst = derive2 { name="dst"; version="1.5.2"; sha256="1ivbc6k3ynl7ikc1yddxykqrgzz7dazf6bc71xllsh9x16fy8dqk"; depends=[]; }; dstabledist = derive2 { name="dstabledist"; version="0.1.0"; sha256="07nvsv0xb6wv0yl7ia7sgm6ysi4w2714pjyqhbzl76mp4c7cx7cd"; depends=[Rdpack stabledist]; }; dstat = derive2 { name="dstat"; version="1.0.4"; sha256="023jp0xdbg200ww1gnr3fzgjqd82acag0jps7q6j6m27q11psvgz"; depends=[]; }; dstat2x2xk = derive2 { name="dstat2x2xk"; version="0.2.0"; sha256="16qbczzjzhmsby8d2sf1xnijiczlk29xazbgl98jbfpmpfzn4q6j"; depends=[BiasedUrn]; }; + dtComb = derive2 { name="dtComb"; version="1.0.0"; sha256="1syygvgv05ah6hj2cs22ghb4aszwn0mzibb7b13a6jwjq1sv6plx"; depends=[caret epiR gam ggplot2 ggpubr glmnet OptimalCutpoints pROC]; }; dtangle = derive2 { name="dtangle"; version="2.0.9"; sha256="0yg1fbrqixqp93vdw3grvz1la5l2kidgs730qp6yihkp3260cxf3"; depends=[DEoptimR]; }; dtgiw = derive2 { name="dtgiw"; version="1.0.0"; sha256="1902rhfrnmp3550c6sqfrzs7xrrjpym0zpqhfnlffdnn42cp910r"; depends=[]; }; dti = derive2 { name="dti"; version="1.5.4"; sha256="065cmp4fcwb94ajg7p971jiw705kvmmygxzwscxgyqfhw2ad8hrj"; depends=[adimpro aws awsMethods gsl oro_dicom oro_nifti quadprog rgl]; }; @@ -8899,34 +9061,35 @@ in with self; { dtrSurv = derive2 { name="dtrSurv"; version="1.4"; sha256="1xc39rigaylrq6d6zm6szgkiwdh4xjkvcima9lkhs1qnbrj3gb5l"; depends=[survival]; }; dtrackr = derive2 { name="dtrackr"; version="0.4.4"; sha256="0biwciv8f8rd6psydiriyylklw7q954dsr3rrax5a2fc3gn9adbz"; depends=[base64enc dplyr fs glue htmltools magrittr pdftools png purrr rlang rsvg stringr tibble tidyr V8]; }; dtt = derive2 { name="dtt"; version="0.1-2"; sha256="0n8gj5iylfagdbaqirpykb01a9difsy4zl6qq55f0ghvazxqdvmn"; depends=[]; }; - dttr2 = derive2 { name="dttr2"; version="0.4.2"; sha256="1fjddr7rqvslhy9ni53jbgvsg8ffp09mna5vazbw9l3126lp55ks"; depends=[chk hms lifecycle]; }; + dttr2 = derive2 { name="dttr2"; version="0.5.0"; sha256="0fniydls6c541xhd902a6gczmhigprg0kh74cfmcx8hgknp7fm42"; depends=[chk hms lifecycle]; }; dtts = derive2 { name="dtts"; version="0.1.1"; sha256="0h1jb37zsvqz8ij4y70d5if02hpxn6r3d5dvkq3pvxhqz2l2swij"; depends=[bit64 data_table nanotime Rcpp RcppCCTZ RcppDate]; }; dtw = derive2 { name="dtw"; version="1.23-1"; sha256="0vc2is1hf1g0sw92kzl8mddck264qwiqgm5q2wkcwwz65fss7mkf"; depends=[proxy]; }; - dtwSat = derive2 { name="dtwSat"; version="1.0.0"; sha256="04bmic5qxz8ka6gn7npixcgky1vyf4jaq48i6h4cc34n9wwhzi4a"; depends=[ggplot2 mgcv proxy sf stars tidyr twdtw]; }; dtwclust = derive2 { name="dtwclust"; version="5.5.12"; sha256="19dmy9jalwp2vcfkzm58g5wf4nmp3290rrsa51prw8xrjj0hk1g3"; depends=[clue cluster dplyr dtw flexclust foreach ggplot2 ggrepel Matrix proxy Rcpp RcppArmadillo RcppParallel RcppThread reshape2 RSpectra shiny shinyjs]; }; dual = derive2 { name="dual"; version="0.0.5"; sha256="08r2qz5rvsc3pjrc8rsks6r39w52n621mfg77yfnk4lc1vqn4y8d"; depends=[]; }; dual_spls = derive2 { name="dual.spls"; version="0.1.4"; sha256="1ap4wngcakfr7q5jji63zlmbz3xw02chbqj4kwg9v9g0bq90y7k4"; depends=[pdist]; }; + dualScale = derive2 { name="dualScale"; version="1.0.0"; sha256="0dw8vknkvb9qzmxw2xmwnpa1dlrqhx70j32q6dm5j1sxjyw2zx37"; depends=[eba ff ggplot2 ggrepel glue Matrix matrixcalc RColorBrewer]; }; dualtrees = derive2 { name="dualtrees"; version="0.1.5"; sha256="02zwfvz4vb8ppyjggkn5483p7b12l3ah1swpgc7g3p94ii5hr0vy"; depends=[]; }; duawranglr = derive2 { name="duawranglr"; version="0.6.7"; sha256="0hxmvyl81xlp3vv1w7462cjfa9hdz5lki0p5pn0ik7dv5aap3wbq"; depends=[digest dplyr haven readr readxl]; }; dub = derive2 { name="dub"; version="0.2.0"; sha256="066lzyk44380mf17vx4db4a3a4rs7zl85mj5hjg172khjbqnbixw"; depends=[]; }; - duckdb = derive2 { name="duckdb"; version="0.9.1"; sha256="1a5x31xnspcxw66l35d0fyvj8bmvjc2sw3kbz4dmm00cwq3lz9zr"; depends=[DBI]; }; + duckdb = derive2 { name="duckdb"; version="0.9.2-1"; sha256="15n71fyg9krggkk1lkny96ag970f172cg8ljfb3dwiqr2kl7n724"; depends=[DBI]; }; duckdbfs = derive2 { name="duckdbfs"; version="0.0.3"; sha256="1fvcq4a1r5las5xip28f7wcqnijd6r79s4bbp5c5yxd2xgccwvsa"; depends=[DBI dbplyr dplyr duckdb]; }; duckduckr = derive2 { name="duckduckr"; version="1.0.0"; sha256="1wki8xvqp5hr27iafd9jbryl9faywfkdkpn0pa0afywbic39k2cm"; depends=[crul jsonlite]; }; - duckplyr = derive2 { name="duckplyr"; version="0.2.2"; sha256="1yzqflpijnrg7dn87iz9b4z3z8ssl55jhva1n4vn3g6d85ls4ipv"; depends=[cli collections DBI dplyr duckdb glue lifecycle purrr rlang tibble tidyselect vctrs]; }; - duke = derive2 { name="duke"; version="0.0.1"; sha256="1frnf4kxjjrxbwhc06pcjzmr5zdcdx2ssw5avc2jq54r8d7h3j23"; depends=[ggplot2 scales]; }; + duckplyr = derive2 { name="duckplyr"; version="0.3.0"; sha256="1wqw43qpgcq5zpjnwii5765jjqli89ynmj6spvrs2ra4kyhsgss2"; depends=[cli collections DBI dplyr duckdb glue lifecycle purrr rlang tibble tidyselect vctrs]; }; + duke = derive2 { name="duke"; version="0.0.3"; sha256="04z7vcgdljp47grn1ppdj4acfs3gq7xmghyzj96wq1aisnh0777b"; depends=[ggplot2 scales]; }; dumbbell = derive2 { name="dumbbell"; version="0.1"; sha256="0v0b4wbfskvcnzx10z9v4rf3mq8ccswz63pd6i1z7mggnwv38ps5"; depends=[data_table dplyr ggplot2 rlang rstatix tidyr tidyverse]; }; dummy = derive2 { name="dummy"; version="0.1.3"; sha256="081a5h33gw6ym4isy91h6mcf247c2vsdygv9ll07a3mgjcjnk79p"; depends=[]; }; dundermifflin = derive2 { name="dundermifflin"; version="0.1.1"; sha256="0rp8p4ln92kfxkczl7vi9r2jhxb1ky203s02940cjjkczsphpcc1"; depends=[crayon stringi]; }; + dunlin = derive2 { name="dunlin"; version="0.1.7"; sha256="10xfps9b2dxw4w6c5z5djsp7ssz1rnpccvnai471r1zppyv14hy7"; depends=[checkmate dplyr forcats glue magrittr rlang stringr tibble yaml]; }; dunn_test = derive2 { name="dunn.test"; version="1.3.5"; sha256="0lqwvyl3pyygfc73nf81gzw3zl3w43r7ki0yw2dgrzhkpb2iji4a"; depends=[]; }; dupree = derive2 { name="dupree"; version="0.3.0"; sha256="0q8c0z1yhym20rhfjrc8n03gk458z0n8axx013rcwk1vc2zwk670"; depends=[dplyr lintr magrittr purrr rlang stringdist tibble]; }; dvir = derive2 { name="dvir"; version="3.2.1"; sha256="09fcqhzy53bfkzlff2jpq76d9sygj6vcs85k70n06p633ldvayap"; depends=[forrel pedprobr pedtools ribd]; }; dvmisc = derive2 { name="dvmisc"; version="1.1.4"; sha256="01v6sixx0f3nrn6ymfifb3pvd2msfrwm21kmdv38laxq29vc4rsi"; depends=[cubature data_table dplyr ggplot2 MASS mvtnorm pracma rbenchmark Rcpp survey tab]; }; dvqcc = derive2 { name="dvqcc"; version="0.1.0"; sha256="011mwdwh046wninfjdy00wxn312ykzn90nz9fz3l7c5cw9gzzfkg"; depends=[ggplot2 tsDyn]; }; + dwctaxon = derive2 { name="dwctaxon"; version="2.0.3"; sha256="0ypdfqnf70ylbrd1r8kpb531cd08izmqhsz84yxzw6xfyiqa6657"; depends=[assertthat digest dplyr glue purrr rlang settings stringr tibble]; }; dwdradar = derive2 { name="dwdradar"; version="0.2.10"; sha256="0dwnyzzha8bz6pzacak909hp65jmf1l3wby9vg62gp7rwlr1gbaj"; depends=[]; }; dwlm = derive2 { name="dwlm"; version="0.1.0"; sha256="0n5dil9qvyy4gish3wnv8bzq0ci1p0dr2vmbbadl29jl7rd1v0rc"; depends=[]; }; dwp = derive2 { name="dwp"; version="1.1"; sha256="1a70lxw4ck3pbklyibn8x6qpgj16zvawi76qqc9rnc26q2n5zp6j"; depends=[boot expint GenEst gtools invgamma magrittr MASS matrixStats mvtnorm numDeriv plotrix pracma sf statmod VGAM]; }; dyads = derive2 { name="dyads"; version="1.2.1"; sha256="0nx4gx51p0qz1565yn7xg0ijrkqvn9ql9hrmp5lwl4lxvsjnwki1"; depends=[CholWishart MASS mvtnorm RcppZiggurat Rfast]; }; - dycdtools = derive2 { name="dycdtools"; version="0.4.3"; sha256="06hm00mfkkg5yxpf30xb4i21bna0hpa0g86vx9qz9vf7f7cvdwjx"; depends=[dplyr ggplot2 lubridate ncdf4 R_utils RColorBrewer tidyr]; }; dydea = derive2 { name="dydea"; version="0.1.0"; sha256="15alr3f6wkkpjd5wmcjazi58yc8gwcqr662mjwlfg15r94fzqrlg"; depends=[Chaos01]; }; dygraphs = derive2 { name="dygraphs"; version="1.1.1.6"; sha256="022j007mzfa9k2n31yg4aizcsf571vv3jip092h23rqj03rk3ly3"; depends=[htmltools htmlwidgets magrittr xts zoo]; }; dymo = derive2 { name="dymo"; version="1.1.0"; sha256="0s1gpi5qiafkf91awyx52qw15qs7m18bql51jibgh1lqnqgv1757"; depends=[fANCOVA ggplot2 greybox imputeTS lubridate MASS matlib modeest moments narray purrr readr scales tictoc]; }; @@ -8938,7 +9101,7 @@ in with self; { dynRB = derive2 { name="dynRB"; version="0.18"; sha256="0sz0a1g6z48f0s7ch86y9mvazwk4gdswjj179a13d0yjhy9rgpk0"; depends=[corrplot dplyr foreign ggplot2 RColorBrewer reshape2 vegan]; }; dynaSpec = derive2 { name="dynaSpec"; version="1.0.1"; sha256="0wzfy50602wlsh4sbfjadsr01f3az2lvk5c4px3qmcvv5gybd6w0"; depends=[ari av gganimate ggplot2 magrittr NatureSounds pbapply png scales seewave tuneR viridis]; }; dynaTree = derive2 { name="dynaTree"; version="1.2-16"; sha256="14yxs9f03bdmrf3lis7hzk04smz0dddammbd0na4gw7bq14341bm"; depends=[]; }; - dynamAedes = derive2 { name="dynamAedes"; version="2.1.2"; sha256="04d161lvd1hbr9y9cawwj50psaql8gmnskggaxbq9c0wwdgxr311"; depends=[doParallel dplyr drc fields foreach geosphere raster slam sp]; }; + dynamAedes = derive2 { name="dynamAedes"; version="2.2.8"; sha256="1pmcxdac29lwy94l1k9fn4b7chp4c6vj27aajhyf6fhxa41dq921"; depends=[abind doParallel drc foreach geosphere terra]; }; dynamac = derive2 { name="dynamac"; version="0.1.12"; sha256="0gggzhidn5z4g7pzqx1bg56prnh9krph65k3yj677qrff12abbx9"; depends=[lmtest MASS]; }; dynamic = derive2 { name="dynamic"; version="1.1.0"; sha256="15jxly44rj2x79jvps2ln0hrm1384p56yll9jk96w1vhaf3gbsxm"; depends=[dplyr ggplot2 lavaan magrittr patchwork purrr simstandard stringr tibble tidyr]; }; dynamicSDM = derive2 { name="dynamicSDM"; version="1.3.3"; sha256="08kv5bp8yqlrxxlr4fz4zzzcgh3sc6y9dg934gh97p5vxmwjravq"; depends=[dplyr googledrive lubridate magrittr readr reticulate rgee sf terra tidyr]; }; @@ -8956,19 +9119,19 @@ in with self; { dynparam = derive2 { name="dynparam"; version="1.0.2"; sha256="12cclb8r13gn407197sw5gx2vfd0qc69mp16jam9chybxbj3pvx0"; depends=[assertthat carrier dplyr dynutils magrittr purrr stringr tibble tidyr]; }; dynpred = derive2 { name="dynpred"; version="0.1.2"; sha256="111ykasaiznn3431msj4flfhmjvzq7dd1mnzn1wklc5ndix1pvf9"; depends=[survival]; }; dynprog = derive2 { name="dynprog"; version="0.1.1"; sha256="11zsx2c4hv7k22pw85aa01zk4r0qpzwnf73ynylkfxfbi87rda9s"; depends=[rlang]; }; - dynr = derive2 { name="dynr"; version="0.1.16-91"; sha256="0h2mgnqhcq420f0qqbgnkjk1wbgr9x2fk8hrk22j01mzhc4lmsm5"; depends=[car deSolve fda ggplot2 latex2exp magrittr MASS Matrix mice numDeriv plyr Rdpack reshape2 stringi tibble xtable]; }; - dynsbm = derive2 { name="dynsbm"; version="0.7"; sha256="169yk539vynjbn89q6vs3l3fx7hk8n3i1msa4jws5vypgljc2rir"; depends=[RColorBrewer Rcpp]; }; + dynr = derive2 { name="dynr"; version="0.1.16-105"; sha256="0s9n62k9cghvqgcpgingcvni3fzq2d9lrnj48i92kb25165446wm"; depends=[car deSolve fda ggplot2 latex2exp magrittr MASS Matrix mice numDeriv plyr Rdpack reshape2 stringi tibble xtable]; }; dynsim = derive2 { name="dynsim"; version="1.2.3"; sha256="1fk23cp2hvkn7msxrdc9cnm4pmcmhcdf3q6rwm507bniigrswnx4"; depends=[ggplot2 gridExtra MASS]; }; - dynsurv = derive2 { name="dynsurv"; version="0.4-5"; sha256="1cflp9q3364qhz06hy9h42q7q455ylk8k3zldppnhz5cq0n56z2n"; depends=[BH data_table ggplot2 nleqslv splines2 survival]; }; + dynsurv = derive2 { name="dynsurv"; version="0.4-6"; sha256="0nxksy8q1r82qak77sb99kpwhq011d4jh4iicc7c0iin04r5nym4"; depends=[BH data_table ggplot2 nleqslv splines2 survival]; }; dyntaper = derive2 { name="dyntaper"; version="1.1"; sha256="0i8snv70hzsywijivkxphm7xcp64r7kh8v6hiy0hh4hh624i120i"; depends=[]; }; dynutils = derive2 { name="dynutils"; version="1.0.11"; sha256="06an2bm1d131v28m240vii2wisbz3zs32wbamm2w7r8rl3yrxkh9"; depends=[assertthat crayon desc dplyr magrittr Matrix proxyC purrr Rcpp remotes stringr tibble]; }; dynwrap = derive2 { name="dynwrap"; version="1.2.4"; sha256="1jls01flvr91vyipilaqv2n3irniq678bm6f1jlxr2apr7w0rlyx"; depends=[assertthat babelwhale crayon dplyr dynparam dynutils glue igraph magrittr Matrix processx purrr readr reshape2 stringr tibble tidyr yaml]; }; - e1071 = derive2 { name="e1071"; version="1.7-13"; sha256="0bvbgcbj8a5z3rv4z4cx6dlwhk374fwd8l1jkq7slsbfmy8y356s"; depends=[class proxy]; }; + e1071 = derive2 { name="e1071"; version="1.7-14"; sha256="15aiwr1jhv3a2r9jqqy8d5rf0c8y09zzi45116whgk1s0ymrfkbm"; depends=[class proxy]; }; eAnalytics = derive2 { name="eAnalytics"; version="0.3"; sha256="0kh2mnn4piy30ya0z9hrk10x14pz4li5l0gs8c2by9vkq54cq53i"; depends=[dplyr DT energyr googleVis leaflet plotly shiny shinydashboard shinyWidgets]; }; eBsc = derive2 { name="eBsc"; version="4.17"; sha256="18k622687qvp6q8m2ycn9ppwvv2jh76dj92vfkl0b99jng2hv1zl"; depends=[Brobdingnag MASS Matrix mvtnorm nlme Rcpp RcppArmadillo]; }; eCAR = derive2 { name="eCAR"; version="0.1.2"; sha256="1ps98abmdv8xf8xsnif95yg8z8564nlysv8vncp3cl5wc03pknhl"; depends=[Matrix]; }; + eCV = derive2 { name="eCV"; version="0.0.1"; sha256="03gns9gdy4r155lq3h97da12cclfcf13davbmxpy6h6k1yg280g8"; depends=[future future_apply idr MatrixGenerics mvtnorm]; }; eChem = derive2 { name="eChem"; version="1.0.0"; sha256="0wmf204hqd4s5har5l9bkcbrbmbqbb8m11w2aivi2gs98f3hy51p"; depends=[animation plot3D]; }; - eDITH = derive2 { name="eDITH"; version="0.1.1"; sha256="04xq7s46qf4gmrj0gza021ra5yqdx9mjncp8p0qrbnalwj6xqm3y"; depends=[BayesianTools DHARMa fields LaplacesDemon OCNet Rcpp rivnet terra]; }; + eDITH = derive2 { name="eDITH"; version="0.1.2"; sha256="1kyhph768agzxii40p2fhknivhppy1cfclljid49vf3aphicj1v1"; depends=[BayesianTools DHARMa fields LaplacesDemon OCNet Rcpp rivnet terra]; }; eDMA = derive2 { name="eDMA"; version="1.5-3"; sha256="0wyp81si6lcispqng4c7lii22qbyblvijgnlxvcsnkcxj5hpm76j"; depends=[Rcpp RcppArmadillo xts zoo]; }; eFRED = derive2 { name="eFRED"; version="0.1.0"; sha256="1sqhcwxbi2gxgznz0z3iyvllalq9qwm18bc60dr6y2wvcilagsiy"; depends=[httr jsonlite]; }; eGST = derive2 { name="eGST"; version="1.0.0"; sha256="0qi4vg0pwy55js9ww1cw85ssim3x7s2p98cjijxvlrvid8sns5bq"; depends=[MASS matrixStats mvtnorm purrr]; }; @@ -8979,14 +9142,16 @@ in with self; { ePCR = derive2 { name="ePCR"; version="0.9.9-11"; sha256="0bkvjvygdnzcc23sslgkcrx11mzwgsqss37lwnbr7rq0jp1sw46s"; depends=[Bolstad2 glmnet hamlet impute pracma survival timeROC]; }; eRTG3D = derive2 { name="eRTG3D"; version="0.7.0"; sha256="1d559p1z73zqd5ym0bs7lpp1w1di7sxpryq41hvkj7azrlijy0ry"; depends=[CircStats ggplot2 pbapply plotly raster rasterVis tiff]; }; eRm = derive2 { name="eRm"; version="1.0-4"; sha256="0rp2lxkwkh09zmv101rzk7x1v1pmscp71qpf8f4chxp3idg6rpid"; depends=[colorspace lattice MASS Matrix psych]; }; - eSDM = derive2 { name="eSDM"; version="0.3.7"; sha256="0rv5hhjsdkq0837822d52xfvfbj9qx1kjmqj8wyny335gv631205"; depends=[dplyr magrittr purrr rlang ROCR sf shiny units]; }; + eSDM = derive2 { name="eSDM"; version="0.4.0"; sha256="1416pd8z9nydsh7x3w9fm66dn2d0r9r6apri6hgg4fjjil9w07np"; depends=[dplyr magrittr purrr rlang ROCR sf shiny units]; }; eSIR = derive2 { name="eSIR"; version="0.4.2"; sha256="05gpskdzjdm3kp7skqvy7dmj8sgh4jhpkm6akmxlfxn8b627zvg1"; depends=[chron coda data_table ggplot2 gtools reshape2 rjags scales]; }; eadrm = derive2 { name="eadrm"; version="0.1.4"; sha256="0s9rk5iym5crlq4pr3gbgqhswjn3a7a4nclbvzhmzrxwfszqfy70"; depends=[]; }; - eaf = derive2 { name="eaf"; version="2.4.1"; sha256="0qp6qq2fqlrpgyrwn1riwcwbjqc0bgbn6i909sclbj5blkc6kl5x"; depends=[matrixStats modeltools Rdpack]; }; + eaf = derive2 { name="eaf"; version="2.5"; sha256="0krvl6gk44yy9r30sck7mn0k37mi8j7nw90b56klww1zqh0ihs8p"; depends=[matrixStats modeltools Rdpack]; }; earlyR = derive2 { name="earlyR"; version="0.0.5"; sha256="0978vv48sj1hs61rdb3xv02s8qz03jcm1c8q1mbb3d033x1q7k22"; depends=[distcrete EpiEstim epitrix ggplot2]; }; earlygating = derive2 { name="earlygating"; version="1.1"; sha256="0wwkn30kjdg0qni05l3acbgai9j3h2mqjli49afmpd2453fpyxig"; depends=[betareg doParallel foreach]; }; earlywarnings = derive2 { name="earlywarnings"; version="1.1.29"; sha256="1xa9rijqqxa5l253dg8dn1jjhdakf8krl5rflq5v9gybfyrq1885"; depends=[fields ggplot2 Kendall KernSmooth knitr lmtest moments nortest quadprog som spam tgp tseries]; }; earth = derive2 { name="earth"; version="5.3.2"; sha256="1shbmh730fkn6zh5glzyygvarndahx1fs1dv26lhc9wsvxgdfi68"; depends=[Formula plotmo TeachingDemos]; }; + earthdatalogin = derive2 { name="earthdatalogin"; version="0.0.2"; sha256="1g044i4kjl5ica9dlg0y2xnhaiqb3xi9ha81ljcz4w8f5mkj7y46"; depends=[httr openssl purrr]; }; + earthtide = derive2 { name="earthtide"; version="0.1.2"; sha256="02l84019zpnpdb3j94dx6hq8c2is1819skmfrwa5vg9dvwzbqii4"; depends=[R6 Rcpp RcppEigen RcppThread]; }; earthtones = derive2 { name="earthtones"; version="0.1.1"; sha256="17biiw0ig8i8ihc2f8csp0bqryygg27ic2v1vrf81ax3qzhngy4l"; depends=[ggmap]; }; easy_utils = derive2 { name="easy.utils"; version="0.0.3"; sha256="14igypzhqd9fc47jhsyv86a5rgpfvikkig4vb07k00rw00h3ijbg"; depends=[dplyr fastmatch Polychrome rlang scales]; }; easyAHP = derive2 { name="easyAHP"; version="0.1.1"; sha256="161mn90j9ph1p9277mj61hch8ndcv7k9izs32q93y5wp474gzynd"; depends=[]; }; @@ -8999,32 +9164,35 @@ in with self; { easySVG = derive2 { name="easySVG"; version="0.1.0"; sha256="03gl5gl0yqgpygd4kna79wrhflbnq3zrz3iq2i8hk9xqd83mszh3"; depends=[]; }; easySdcTable = derive2 { name="easySdcTable"; version="1.0.7"; sha256="0wvnyhjq94cqjx9dw2nc5v66a11qbi972g0shvzz7q4llkgm21if"; depends=[Matrix sdcTable shiny SSBtools]; }; easyVerification = derive2 { name="easyVerification"; version="0.4.5"; sha256="1k62dfhnc0g07jf82gm1m3747z8zchmj4mi5qap4dgc7pxdp2ikc"; depends=[pbapply Rcpp SpecsVerification]; }; + easyalluvial = derive2 { name="easyalluvial"; version="0.3.2"; sha256="1jn65b4rfzw3hn6n1bmdaqfv2fb7wq0b8rgbflj230k79kravsxm"; depends=[dplyr forcats ggalluvial ggplot2 ggridges gridExtra magrittr progress progressr purrr randomForest RColorBrewer recipes rlang stringr tibble tidyr]; }; easyanova = derive2 { name="easyanova"; version="10.0"; sha256="0r8qyfhbipyj4j13g1h3p3gag3i3mmpxq2zzq0cighamqbcbmvaf"; depends=[nlme]; }; + easybgm = derive2 { name="easybgm"; version="0.1.1"; sha256="08pkr75l252k3pzbrqhfyi1f8vr66fw7mffxlfyhilgr8p7mgqnm"; depends=[BDgraph bgms dplyr ggplot2 HDInterval igraph qgraph]; }; easycensus = derive2 { name="easycensus"; version="1.1.1"; sha256="0k8cc02f7qf9g5fi9i8lsz02mkb0kcvqkh5zh7bajsfkmmksrr17"; depends=[censusapi cli dplyr pillar rlang stringr tidyr vctrs]; }; easyclimate = derive2 { name="easyclimate"; version="0.2.1"; sha256="19gfajf4bhlz0mpq70xjy87xc3qi9kqs3869zm2jy4x0i3cingk6"; depends=[R_utils RCurl terra]; }; easycsv = derive2 { name="easycsv"; version="1.0.8"; sha256="1i2k5372b6a5pypk6m0rsvvkcy0y51pvh57a60rpgqk8q0yq8pig"; depends=[data_table]; }; easydb = derive2 { name="easydb"; version="1.1.0"; sha256="1xmhg5320ilc1138x23sb8s2wr7d753h0dv9i1az3zicx0858zbd"; depends=[askpass assertthat cli DBI keyring rlang yaml]; }; - easylabel = derive2 { name="easylabel"; version="0.2.4"; sha256="1pqdaymcrqjdqj0fhb1q7i1i8p7r7iwzcn08mcq5wlwr52kcpvfy"; depends=[DT gtools plotly RColorBrewer shiny shinybusy shinycssloaders splus2R]; }; + easylabel = derive2 { name="easylabel"; version="0.2.7"; sha256="1r5s1nrydz2r07d4my6j00g01yy8cfvhzpxniscjy9kw1qs85yfw"; depends=[DT ggplot2 gtools plotly RColorBrewer rlang shiny shinybusy shinycssloaders splus2R]; }; easynls = derive2 { name="easynls"; version="5.0"; sha256="1ma2q4y5dxk6q99v880vqfsgy1fha96j7pi8ch699l0pi6bx0d6c"; depends=[]; }; easypackages = derive2 { name="easypackages"; version="0.1.0"; sha256="0r911lys38jr60pvifkdp6d7gspdrcq3g7dn2fqhacz8pqvg1b5f"; depends=[assertthat devtools]; }; easypower = derive2 { name="easypower"; version="1.0.1"; sha256="1vf0zv55yf96wjxja6ifdjvgc9nw0jl0hnc1ygyjd8pmwbgdz9bl"; depends=[pwr]; }; easyr = derive2 { name="easyr"; version="0.5-11"; sha256="1wzc21n2f7i7idd2hs5s0sh46gpgl6sf4wmrmhi0wc6jcc4sb5rk"; depends=[data_table digest dplyr foreign glue Hmisc lubridate readxl rlang rprojroot stringr XML]; }; easyreg = derive2 { name="easyreg"; version="4.0"; sha256="1w4wlhziyhdyldm0zgnm73fnxrh0fv8hwcw5j8ircxb4npx7bcgg"; depends=[nlme]; }; - easystats = derive2 { name="easystats"; version="0.6.0"; sha256="09a2gshg0h01w79g3zq66v5h0vbkrz9pgj3dijmccix28bmmqar3"; depends=[bayestestR correlation datawizard effectsize insight modelbased parameters performance report see]; }; + easystats = derive2 { name="easystats"; version="0.7.0"; sha256="1flk1x1szn8hp8yhp9dxcd8xfdnnny6acpbb2mkh5lc6ydv0ayw5"; depends=[bayestestR correlation datawizard effectsize insight modelbased parameters performance report see]; }; eat = derive2 { name="eat"; version="0.1.4"; sha256="1s286b6wx0d59n2v3hf6s1zy1f15mwf6ssrpwciard3giccnf556"; depends=[conflicted dplyr ggparty ggplot2 ggrepel lpSolveAPI partykit Rdpack reshape2]; }; - eatATA = derive2 { name="eatATA"; version="1.1.1"; sha256="1pm66hvjqcgjbdkvfwxn3myzb6a458hkwg7cd6lhkp1mmj7anigs"; depends=[lpSolve mathjaxr Matrix Rglpk]; }; + eatATA = derive2 { name="eatATA"; version="1.1.2"; sha256="0ak9722mgy9fgpk43wppgisfxj6v4fzc8qwk4cmd760sq5gw3j88"; depends=[lpSolve mathjaxr Matrix Rglpk]; }; eatDB = derive2 { name="eatDB"; version="0.5.0"; sha256="0lym1g411ykb2vzi5yr570lmyh30br667wkm5dvnvfs7bsmk05il"; depends=[DBI RSQLite]; }; eatGADS = derive2 { name="eatGADS"; version="1.1.0"; sha256="10d9np84zb5jrak03iq72imj02c55jag121hf4g0yfpplaqnc85q"; depends=[data_table eatDB eatTools haven hms plyr stringi tibble]; }; eatRep = derive2 { name="eatRep"; version="0.14.7"; sha256="11yz0g83ngzab8gqi2mq4s28j7yvl06jf4clwb8vfjqa7lwpfcgq"; depends=[BIFIEsurvey boot car combinat eatGADS eatTools EffectLiteR estimatr fmsb Hmisc janitor lavaan lme4 mice miceadds msm plyr progress reshape2 survey tidyr]; }; - eatTools = derive2 { name="eatTools"; version="0.7.4"; sha256="0qmbwwvqfkyd4z41hihza0996dvsvqshs3pqblfzdlbzyn7glh5b"; depends=[data_table]; }; + eatTools = derive2 { name="eatTools"; version="0.7.5"; sha256="1wn3m3h49j59gvzsnd12m15lwfgrbf6my8xpsij29vmni9p9w6nx"; depends=[data_table]; }; ebGenotyping = derive2 { name="ebGenotyping"; version="2.0.1"; sha256="1jllzc7kvvckrws8qhgvwy626llyb68sp1davp7swx48sf7rwcxc"; depends=[]; }; ebTobit = derive2 { name="ebTobit"; version="1.0.1"; sha256="0sx7blkv3i37qwmbjyrd5z18ya6xkashplx8rz0c38ldkfbk1r2s"; depends=[Rcpp RcppArmadillo RcppParallel]; }; eba = derive2 { name="eba"; version="1.10-0"; sha256="03jr54xq109x9bf8kcs8mi7am17l9ya3xdkdppd8imwd2paqrssk"; depends=[nlme psychotools]; }; ebal = derive2 { name="ebal"; version="0.1-8"; sha256="06hkk0fargzhzqn841c406r72y7jd53mjxgi4hzb2ahnpaiq2q1l"; depends=[]; }; ebci = derive2 { name="ebci"; version="1.0.0"; sha256="00fa2y4ha9nlbjd01qckrrn721s63ja61n5jr4wm7ac6y7xivb2i"; depends=[]; }; ebdbNet = derive2 { name="ebdbNet"; version="1.2.8"; sha256="0far2hvfvj6r4qzr47q72innxxnj0g8vxx6arn7wkcv30jmx34x7"; depends=[igraph]; }; - ebirdst = derive2 { name="ebirdst"; version="2.2021.3"; sha256="1brd9awy43cl45jv7ndkvv21zrrd0fx1llwwxy1mqncdbwbnn65j"; depends=[DBI dplyr ggplot2 gridExtra jsonlite magrittr rlang RSQLite sf stringr terra tidyr viridisLite]; }; + ebirdst = derive2 { name="ebirdst"; version="3.2022.1"; sha256="1zvx5630ka8ik350ikxcmaxqrphs71nh4f86sijxz1csvslqphpm"; depends=[arrow dplyr jsonlite magrittr RColorBrewer rlang sf stringr terra viridisLite]; }; ebmc = derive2 { name="ebmc"; version="1.0.1"; sha256="1z6s1blc2b6b13pk2sd6lcczdcldgjh65cnycjcw7d2g2hnxcifh"; depends=[C50 e1071 pROC randomForest rpart smotefamily]; }; + ebmstate = derive2 { name="ebmstate"; version="0.1.4"; sha256="1jbkzf7zn844jg10cy9kv3v569n82718iqaz7id4jfbcq31p7l8v"; depends=[HDInterval mstate Rcpp survival]; }; ebnm = derive2 { name="ebnm"; version="1.1-2"; sha256="14ql990pgwwb8aakg4ikj7p3ijbfaqjrsvrrjwlma3halqs3cy19"; depends=[ashr deconvolveR dplyr ggplot2 horseshoe magrittr mixsqp rlang truncnorm trust]; }; ebreg = derive2 { name="ebreg"; version="0.1.3"; sha256="1xrs9afjd5hkdmhglj3md5i5hm7awlcdlccz3y2lw4c73lx31ywz"; depends=[lars Rdpack]; }; ebvcube = derive2 { name="ebvcube"; version="0.1.6"; sha256="0fllc0z671g56pnym8vr60bk1fk3f60p8apwdrzplkg7mk9680bj"; depends=[checkmate curl DelayedArray ggplot2 HDF5Array jsonlite memuse ncdf4 ncmeta reshape2 rhdf5 stringr terra tidyterra withr]; }; @@ -9032,7 +9200,6 @@ in with self; { ecan = derive2 { name="ecan"; version="0.2.1"; sha256="12bkgmbm6mbqcjhmanlg7zk0nlgqf8m1b4m7f2wcxsl8nbks8ymd"; depends=[cluster dendextend dplyr ggplot2 jsonlite labdsv magrittr MASS purrr rlang stringr tibble tidyr vegan]; }; ecb = derive2 { name="ecb"; version="0.4.2"; sha256="19ir0ywbzwyx90mgxqk9byb63afic2fvhrhy174di0pmj522vnr4"; depends=[curl httr rsdmx xml2]; }; ecce = derive2 { name="ecce"; version="2.0.6"; sha256="185b6vdf5fqfm6xfg1h90gglicy3p73pk6mqfpp8n4sbywydqd31"; depends=[curl digest httr jsonlite uuid]; }; - ecd = derive2 { name="ecd"; version="0.9.2.4"; sha256="0cdfdbkjjxs78bvvy5zrax0qgcc5fzhlxl3wqapfxigf5xlxlavh"; depends=[digest ggplot2 gridExtra gsl moments optimx polynom Rmpfr RSQLite stabledist xtable xts yaml zoo]; }; ecdfHT = derive2 { name="ecdfHT"; version="0.1.1"; sha256="1n3n9n86pj8c54l3xvp7knvi0ajbnjmz9pi79p7wfq92a90fqx48"; depends=[rgl]; }; ecespa = derive2 { name="ecespa"; version="1.1-17"; sha256="1n96nxb8spyi914m21yybb2yajawz22fmjldbr9j76dl7s36ygcd"; depends=[spatstat spatstat_explore spatstat_geom spatstat_model spatstat_random]; }; ech = derive2 { name="ech"; version="0.1.3"; sha256="092djklyw9j5cjbkndb1jby2mn896y93yrysrg704dfcjd04yv2g"; depends=[assertthat curl dplyr fs geouy glue haven janitor labelled laeken rlang srvyr statar stringr survey tidyr]; }; @@ -9042,7 +9209,7 @@ in with self; { echo = derive2 { name="echo"; version="0.1.0"; sha256="1m3dzdgkl6v9z0wv3ws1yn58zi6bxgdy3p6a5jmq2rwhb8wz1lr8"; depends=[]; }; echo_find = derive2 { name="echo.find"; version="4.0.1"; sha256="1nadqqpxgx2ck16nzjp5ajm6714452qzllg5cq1jpisv1yb31db2"; depends=[boot minpack_lm]; }; echogram = derive2 { name="echogram"; version="0.1.2"; sha256="0kir7x32fk3fc63kr3b2j0hfkmivs2pwrlxyjvdg7xqc59hjp3ma"; depends=[geosphere readHAC]; }; - echoice2 = derive2 { name="echoice2"; version="0.2.3"; sha256="1rsa50xfg01a07qnjsba5awr8vi16acqgzxlaw4k03h48ya7q05x"; depends=[dplyr forcats ggplot2 magrittr purrr Rcpp RcppArmadillo rlang stringr tibble tidyr tidyselect]; }; + echoice2 = derive2 { name="echoice2"; version="0.2.4"; sha256="0dsyr2fk94nvcd1749amk8mvvli5aalapb2mlhr25mj6d2iyrc30"; depends=[dplyr forcats ggplot2 magrittr purrr Rcpp RcppArmadillo rlang stringr tibble tidyr tidyselect]; }; echor = derive2 { name="echor"; version="0.1.9"; sha256="11r62r0kq813cv8mc6qh8kkwj5apl8pc6ydw0npd38z9v21f8xyc"; depends=[curl dplyr httr plyr progress purrr readr rlang sf tibble tidyr]; }; ecic = derive2 { name="ecic"; version="0.0.3"; sha256="1b8jwxmbqs3hzjf1iy1f74way8ymi1lac38jd8zvc2np39szq2i8"; depends=[furrr future ggplot2 patchwork progress progressr]; }; ecipex = derive2 { name="ecipex"; version="1.1"; sha256="16iyi6n0pnyfmy47b0ranjbh3spvq8cgkmcamzhgjfj7qn0ix184"; depends=[CHNOSZ]; }; @@ -9053,7 +9220,7 @@ in with self; { ecocbo = derive2 { name="ecocbo"; version="0.10.2"; sha256="003fdvlzalga0s968mznaa7i32v5v4ppw9n0dknqw0xh53fcg5zf"; depends=[doParallel foreach ggplot2 ggpubr sampling vegan]; }; ecochange = derive2 { name="ecochange"; version="2.9.3.1"; sha256="1dr7a0qi6rf6vrqr4pbrkif5hvdjp5gyz5mk996mbqb939hpxbsg"; depends=[geodata getPass ggplot2 httr landscapemetrics lattice raster rasterDT rasterVis rlang sf sp tibble]; }; ecocomDP = derive2 { name="ecocomDP"; version="1.2.2"; sha256="01yml6l8fpq4vznfvmfa84pwq976q2c4346lrsxcnaqif4if3hlm"; depends=[data_table dplyr EML emld geosphere ggplot2 httr lubridate magrittr neonUtilities RColorBrewer rlang rmarkdown stringr tidyr uuid xml2]; }; - ecodist = derive2 { name="ecodist"; version="2.0.9"; sha256="1m78bgbr7xjlc01q4n921y3aq2nkdbdkv9qpppfarw0d77pqpsdf"; depends=[]; }; + ecodist = derive2 { name="ecodist"; version="2.1.3"; sha256="161xyjx004aqx1l64fd6wqz7m3fqq61ijc4k00dx2lkifanpx8p0"; depends=[igraph]; }; ecolMod = derive2 { name="ecolMod"; version="1.2.6.4"; sha256="1kbllyh986468182q28g0hhyf2y58lcqd0wc7izi0fcw3ww2xyh6"; depends=[deSolve diagram rootSolve shape]; }; ecolRxC = derive2 { name="ecolRxC"; version="0.1.1-10"; sha256="0m7c8ifmzq5s6sh8xp09ald7rd47ga66gzmsqn8028xylf8rpsbf"; depends=[]; }; ecolTest = derive2 { name="ecolTest"; version="0.0.1"; sha256="0gkhf8gdjvkys54x0qx0h5i0lz0ksba6xdy15wzblzhym43vh9wf"; depends=[]; }; @@ -9074,7 +9241,7 @@ in with self; { ecostatscale = derive2 { name="ecostatscale"; version="1.1"; sha256="040y610c1v7l5phy8lmimafjh466s1zdhk81cfcarwhf0l1hzzpr"; depends=[deSolve mvtnorm]; }; ecotox = derive2 { name="ecotox"; version="1.4.4"; sha256="01sc2lf2kca7wqqyd3gk48va39gb7ijzgs2smgb2k4xbzjqndg08"; depends=[tibble]; }; ecotoxicology = derive2 { name="ecotoxicology"; version="1.0.1"; sha256="084xkr59d7x9zxmsnsyym2x8jshz6ag6rvnmhd1i6fzar8ypwccb"; depends=[]; }; - ecotraj = derive2 { name="ecotraj"; version="0.0.3"; sha256="0mfvyh25xjhfd8k8b84d3vi9nf69g2lg82x6j3nsyhxy1kax9py8"; depends=[Kendall MASS Rcpp]; }; + ecotraj = derive2 { name="ecotraj"; version="0.1.1"; sha256="1qsp67y07xrqq0szlq8ks5i7w6aa42kmai9m5pjpfifs9hz5wnrz"; depends=[Kendall MASS Rcpp]; }; ecoval = derive2 { name="ecoval"; version="1.2.9"; sha256="05a6hyjsbdp4wwhrm5fwjr7fxx4g2nffhp885q0da2jkzd0754f1"; depends=[fs jpeg rivernet utility]; }; ecp = derive2 { name="ecp"; version="3.1.5"; sha256="17m2m3nz7kqzjw2bkkp6c1a3zhwjq2c5mw9pk5g0ma274iiqj8wy"; depends=[Rcpp]; }; ecpc = derive2 { name="ecpc"; version="3.1.1"; sha256="0vi9k3p1xicx53rmccmx1ykdidqb22hkwgr7l5hc0bjzsv7h2w38"; depends=[checkmate CVXR gglasso glmnet JOPS Matrix mgcv multiridge mvtnorm pracma pROC quadprog survival]; }; @@ -9085,7 +9252,7 @@ in with self; { eda4treeR = derive2 { name="eda4treeR"; version="0.6.0"; sha256="0dah3pamlkc6iqskj0cp645l9hrinsmh678adxprsw0yp30727ab"; depends=[car dae dplyr emmeans ggplot2 lmerTest magrittr predictmeans supernova]; }; edbuildmapr = derive2 { name="edbuildmapr"; version="0.3.1"; sha256="0hc5vfpilqxva88dzgp57j9cgsq64r75vhm3hhl8lhi2wwapwk1d"; depends=[dplyr magrittr sf spdep stringr tibble tidyselect tmap]; }; edcpR = derive2 { name="edcpR"; version="1.0.1"; sha256="02d33cd9pkcjrbl9qipcjzkhrc68j7bybg1hpnsngiz4wmf3bfik"; depends=[]; }; - eddington = derive2 { name="eddington"; version="2.1.1"; sha256="0v88v2xmvirnj661jsg2qh7n8afaw71mqks9csnmmz3c16agp7b6"; depends=[Rcpp]; }; + eddington = derive2 { name="eddington"; version="4.1.2"; sha256="0drra1rhq74r0xhd0fif9xbxaavadlnazmcph6m62yx6c1bghf9z"; depends=[R6 Rcpp XML]; }; edeaR = derive2 { name="edeaR"; version="0.9.4"; sha256="120x95a5s51rvpr6kybgs875rbghqqmsrzdpq3jr1007yaxpl710"; depends=[bupaR cli data_table dplyr ggplot2 ggthemes glue hms lifecycle lubridate miniUI purrr rlang shiny shinyTime stringr tibble tidyr zoo]; }; edecob = derive2 { name="edecob"; version="1.2.2"; sha256="1k9790xamyw8ksfgvd8gka1f5mghfma6akdj7bqmlqv3yrlpgbxr"; depends=[ggplot2 rlang]; }; edf = derive2 { name="edf"; version="1.0.0"; sha256="14ikm6j0ndxrk7c7lh5mbd2aci46d4j9a30mvcgnxy3kq6046a7b"; depends=[]; }; @@ -9094,14 +9261,14 @@ in with self; { edgar = derive2 { name="edgar"; version="2.0.7"; sha256="1lzcs78cncz4ira1nnzyip1ap1iva75kfx8ynqqv79pmj8g4nms3"; depends=[httr qdapRegex R_utils stringi stringr tm XML]; }; edgarWebR = derive2 { name="edgarWebR"; version="1.1.0"; sha256="1v9rdj2qdcvzz7g78pa9j6l8d6zjz1q06h09c4547r67bzfz1nxy"; depends=[httr jsonlite xml2]; }; edgeCorr = derive2 { name="edgeCorr"; version="1.0"; sha256="19n67yc58ksin7xydrnfsyyw7fqawm5xli67cz4lv4wb62w6r6ld"; depends=[]; }; - edgebundle = derive2 { name="edgebundle"; version="0.4.1"; sha256="196np22ibvj31f5f45gl5ni5byj1z2h4vyxxcqarny2zfk00qg9j"; depends=[igraph interp Rcpp reticulate]; }; + edgebundle = derive2 { name="edgebundle"; version="0.4.2"; sha256="138cdhk3p95vh5siwwp05kir6kkrvqjlgbz97dgi149i6jmq656k"; depends=[igraph interp Rcpp reticulate]; }; edgebundleR = derive2 { name="edgebundleR"; version="0.1.4"; sha256="0pajr95qqppk2m4l7rfi46rll32z8a7lmq0vmb3p8n0aks5ajn1n"; depends=[htmlwidgets igraph rjson shiny]; }; edgedata = derive2 { name="edgedata"; version="0.2.0"; sha256="11sc7x0m00yhn2c4601dpjv3brmf57i8barsl3p7bawcvka8z5lr"; depends=[]; }; - edibble = derive2 { name="edibble"; version="1.0.0"; sha256="11ybx488vmglnwz82lddfndafd664akwq5vg2mqmbdhb530fxj89"; depends=[AlgDesign cli dae magrittr nestr pillar R6 rlang tibble tidyselect vctrs]; }; + edibble = derive2 { name="edibble"; version="1.1.0"; sha256="01d6d5vv8i2hrx8nw7mv248v562fsr1p1jn6kqsxh7qcx5angnp6"; depends=[AlgDesign cli dae lifecycle magrittr nestr pillar R6 rlang tibble tidyselect vctrs]; }; ediblecity = derive2 { name="ediblecity"; version="0.2.1"; sha256="0ps6ing20bkaj1rjf63d1k5cc3mrymf5hf0mkdp3qq1ghn05s6la"; depends=[dplyr magrittr rlang sf stars]; }; edina = derive2 { name="edina"; version="0.1.1"; sha256="1lpmidyxi54byrsnwwadkh5rr454635xrwa4v2wz8mqr2hngxis3"; depends=[ggplot2 jjb Rcpp RcppArmadillo reshape2 rgen]; }; editData = derive2 { name="editData"; version="0.1.8"; sha256="170i8p264zj716h58bb6pvgh2lnz1w5vplnrcv8vizppi0n1js6l"; depends=[dplyr DT magrittr miniUI openxlsx rio rstudioapi shiny shinyWidgets tibble]; }; - editbl = derive2 { name="editbl"; version="1.0.1"; sha256="0lzq7whmyw0kk8bhka2rg0sg7m21sr5yzh3508cd3r3xyvzil0j0"; depends=[dplyr DT fontawesome shiny shinyjs tibble uuid]; }; + editbl = derive2 { name="editbl"; version="1.0.2"; sha256="17wdp5n3y99ik7j7k6mhgx151khw1gg7jshagbyqm2cnkbz15l5v"; depends=[dplyr DT fontawesome shiny shinyjs tibble uuid]; }; editrules = derive2 { name="editrules"; version="2.9.3"; sha256="07j8wj0fk34irqgsz70h2wad3wdjv5xl1cl702vxbr0nvmpw2ngl"; depends=[igraph lpSolveAPI]; }; edl = derive2 { name="edl"; version="1.1"; sha256="19p0qr9lm0kdinh4qnqx7bzxkbvcfpp6mbddwh0hgsgqkbw916cp"; depends=[data_table plotfunctions]; }; edlibR = derive2 { name="edlibR"; version="1.0.1"; sha256="0ibl8zcaf2p2xb3498zbin7g4ipanyxc9m9zkcj43h2r0304xgsk"; depends=[Rcpp stringr]; }; @@ -9133,9 +9300,9 @@ in with self; { egcm = derive2 { name="egcm"; version="1.0.13"; sha256="16mzhf7x19v9z600n29q4481dmsjfcn55365zbb9d0wrclc3053l"; depends=[ggplot2 MASS pracma quantmod tseries urca xts zoo]; }; egg = derive2 { name="egg"; version="0.4.5"; sha256="1fy7srpiavfn8kyrr1m84an7acgwi6ydzrg71m3b0vk7y9ybmj0m"; depends=[ggplot2 gridExtra gtable]; }; eggCounts = derive2 { name="eggCounts"; version="2.4"; sha256="089psh98w8kcy52h8vv3z8n0sigp46far0a0w4wfsyv2ijzc2l2p"; depends=[BH boot coda lattice numbers Rcpp RcppEigen RcppParallel rootSolve rstan rstantools StanHeaders]; }; - eglhmm = derive2 { name="eglhmm"; version="0.0-23"; sha256="1id1x11fwrv658f555a7jzqvq12v7jxmwpl8avi99gn17lwmwq1g"; depends=[dbd nnet]; }; + eglhmm = derive2 { name="eglhmm"; version="0.1-1"; sha256="1dwz36aq095pbhh9iklv4iizwg27pri3zh7klmnh3rxqkl9xng3h"; depends=[dbd nnet]; }; egor = derive2 { name="egor"; version="1.23.3"; sha256="05y412qlrsrbr0r6bkac72pvvxkhsgapj9l46sr2485azvbyzl7n"; depends=[dplyr pillar purrr rlang srvyr tibble tidygraph tidyr]; }; - eha = derive2 { name="eha"; version="2.11.1"; sha256="1fhs31qk5sh4f6nrxrbrv1f29rkzawjj6v8kid894ji5ifd7qv3l"; depends=[survival]; }; + eha = derive2 { name="eha"; version="2.11.2"; sha256="14gsv1ryc2vfn8yjx33dfmpxd2zp0m092n0hvsmid6ph4f7qnnd5"; depends=[survival]; }; ehaGoF = derive2 { name="ehaGoF"; version="0.1.1"; sha256="15hpzj3ridl6w3pd5z86d88cc88jw09qpqhsdwkar4dby8lgxhi0"; depends=[]; }; ehelp = derive2 { name="ehelp"; version="1.2.1"; sha256="1kqd6mzzcf2b0hslpm2zvxyi3i4vhzxsmvdmfqgrs6703n1dx62g"; depends=[]; }; ei = derive2 { name="ei"; version="1.3-3"; sha256="0i8pvpal23zwsqldhmm3iis4vw9s08mlydpshaig2dsd9549gn11"; depends=[cubature eiPack ellipse foreach MASS mnormt msm mvtnorm plotrix sp tmvtnorm ucminf]; }; @@ -9143,7 +9310,7 @@ in with self; { eiCompare = derive2 { name="eiCompare"; version="3.0.4"; sha256="15s75hy6dp7pqsp5rhh9lqyy8z8cd7gq4hxl08ah4jki82cf877d"; depends=[bayestestR coda data_table doSNOW dplyr ei eiPack foreach ggplot2 magrittr mcmcse overlapping purrr rlang sf stringr tidyr tidyselect wru]; }; eiExpand = derive2 { name="eiExpand"; version="1.0.5"; sha256="1x30np4liy33mkb31040b2mk3yqajp4v0b2n32akm07f8sn3zrxh"; depends=[dplyr ggmap ggplot2 magrittr rlang sf stringr tidyr tidyselect viridis]; }; eiPack = derive2 { name="eiPack"; version="0.2-2"; sha256="1jb7nxk71cyvrmapzwz4fgjv7ca5m17i22acyhx27krl168ss0r2"; depends=[coda MASS msm]; }; - eia = derive2 { name="eia"; version="0.3.7"; sha256="1af9m5qrchxcrhyasx0hkrzjr6z4vixxmq4q9q33bkscy263q9fg"; depends=[dplyr httr jsonlite lubridate magrittr memoise purrr readxl tibble]; }; + eia = derive2 { name="eia"; version="0.4.1"; sha256="188vprgj7lzzs7z3qa2pq8lhhsg8h389frxnq1dr295jqzwrwvis"; depends=[httr jsonlite lubridate memoise purrr readxl tibble]; }; eicm = derive2 { name="eicm"; version="1.0.3"; sha256="0439ngwr8m7inljn8303g2a9v3izw81jz1jqxgbp6xdnvlwwpsyx"; depends=[doSNOW foreach GA iterators optimParallel pso snow ucminf]; }; eigenmodel = derive2 { name="eigenmodel"; version="1.11"; sha256="1l3n0z736xf3x6cyxzmmq1jb2glxi2b75z7v39y4471knh6nbb4d"; depends=[]; }; eikosograms = derive2 { name="eikosograms"; version="0.1.1"; sha256="13s5wqcc8iwnhn3msrh9dfrvq9bwlby93p9v5wcnrm8m9iskax1s"; depends=[plyr]; }; @@ -9164,7 +9331,7 @@ in with self; { elasticnet = derive2 { name="elasticnet"; version="1.3"; sha256="0nxcw06d0cp2mbqzg2fm9yys5xm6xx7bfcfvr0avcs8afkvz29j8"; depends=[lars]; }; elec = derive2 { name="elec"; version="0.1.2.2"; sha256="1qc2hzbkmxvk4zrmdr935klhxvvdc7rmximqybb5aammd351qh2a"; depends=[]; }; elect = derive2 { name="elect"; version="1.2"; sha256="1hjqhmdklspssa75x8xdhv2narqgw80qh259hyfwfgnvva97w2ja"; depends=[msm nnet]; }; - elections = derive2 { name="elections"; version="1.0"; sha256="0ig3pd1dw978g2sg4ynzd3p15nk6hx17pxvbxfi5rm131mjdmjdm"; depends=[]; }; + elections = derive2 { name="elections"; version="1.0.1"; sha256="0gp2sadk18j518fj203qd52nwy93m85yw8ks59jr2ry2w28a6z2h"; depends=[]; }; elections_dtree = derive2 { name="elections.dtree"; version="2.0.0"; sha256="199ms891xgr8jgb5w0lrp8z1aj8faqrfsx60bcgv152v7y12mjx0"; depends=[prefio R6 Rcpp RcppThread Rdpack testthat]; }; electionsBR = derive2 { name="electionsBR"; version="0.3.2"; sha256="05wxzfgh0f3n6w8ah32q2v4f67g6w4qri4dv1linmlax77clv9fn"; depends=[data_table dplyr haven magrittr readr]; }; electivity = derive2 { name="electivity"; version="1.0.2"; sha256="0clxsn9zkpdlq9jgq029ag310ji0hd0l23wfyqh8gkkj0091ip5a"; depends=[]; }; @@ -9187,32 +9354,32 @@ in with self; { elsa = derive2 { name="elsa"; version="1.1-28"; sha256="01sj2a4yhv5m6qj6ih26zw4yzd8s27lll7yp0yysjjrwz79a0fbq"; depends=[raster sp]; }; eltr = derive2 { name="eltr"; version="0.1.0"; sha256="0f4sy2hhsbghasl5xcnqlgxqhb503pl73c5vdkgpcm73smrqbpbv"; depends=[data_table]; }; em = derive2 { name="em"; version="1.0.0"; sha256="16xmksz1zdr61gxycsbia28kj16nrrcdvjcdd3nk6n6zjiy3ca3v"; depends=[dplyr magrittr mclust nnet numDeriv plm Rcpp RcppArmadillo survival]; }; - emBayes = derive2 { name="emBayes"; version="0.1.2"; sha256="1yn21275ry9qz25dip6sii464lhk8q4i06gqqaqqqzlnp964hn6k"; depends=[glmnet Rcpp RcppArmadillo]; }; + emBayes = derive2 { name="emBayes"; version="0.1.4"; sha256="18j50i0px9wgv9w5h015k276ia9ls5fjlj9gvjp6l3b3nr5nr2xq"; depends=[glmnet Rcpp RcppArmadillo]; }; emIRT = derive2 { name="emIRT"; version="0.0.13"; sha256="1z6yd9m6vggbp42qms2sg0rbxjpg15x9m8gkdz1p3q4aqrc2ncj0"; depends=[pscl Rcpp RcppArmadillo]; }; emailjsr = derive2 { name="emailjsr"; version="0.0.2"; sha256="1pxqw0r95pgpnvhmyw46py6bnchswb9wcyl42lsg5ccz74dynmh0"; depends=[httr shiny shiny_i18n shinybrowser]; }; emailvalidation = derive2 { name="emailvalidation"; version="0.1.0"; sha256="1k2i2rnlqzgi7kn2knll86bax4pms68jddrycaqv6pkql8fja93a"; depends=[httr jsonlite]; }; emayili = derive2 { name="emayili"; version="0.7.18"; sha256="0q38lkvp2298jkwlfr6b90ikvkzf31d2v56pdfxz2xf1qmf5p7b2"; depends=[base64enc commonmark curl digest dplyr glue htmltools httr logger magrittr mime purrr rmarkdown rvest stringi stringr tidyr urltools xfun xml2]; }; - embed = derive2 { name="embed"; version="1.1.2"; sha256="093fd33fpnjqai4gicjrf2snqgayzfcgkak3a5fs6qxzgvvfp12s"; depends=[dplyr generics glue keras lifecycle purrr recipes rlang rsample tensorflow tibble tidyr uwot vctrs withr]; }; - embryogrowth = derive2 { name="embryogrowth"; version="8.7"; sha256="1fayl1wxpw9903psrjichrbf6rx38d7shnsjpxdwljw67g6pr5g7"; depends=[deSolve HelpersMG numDeriv optimx]; }; + embed = derive2 { name="embed"; version="1.1.3"; sha256="1aagf1qyvawyg4g9a8s1k73vvk5xzpgxpxm7sb1l0hm5ji8ka906"; depends=[dplyr generics glue keras lifecycle purrr recipes rlang rsample tensorflow tibble tidyr uwot vctrs withr]; }; + embryogrowth = derive2 { name="embryogrowth"; version="9.1"; sha256="0c7ggpa2i9j17zzknx9h5w6sibk5pdy81484gl6sb5s88wmn16qm"; depends=[deSolve HelpersMG numDeriv optimx]; }; emdbook = derive2 { name="emdbook"; version="1.3.13"; sha256="069w10i1590bcyzv4kfsg7wsr1yl9nlsyj6yvys088xll5z4n116"; depends=[bbmle coda lattice MASS plyr]; }; - emdi = derive2 { name="emdi"; version="2.2.0"; sha256="10ivwjs0fgf706fscn5z0ip19py25pzcw81j16hlyahc5ajcgjyr"; depends=[boot formula_tools ggplot2 gridExtra HLMdiag MASS moments MuMIn nlme openxlsx parallelMap readODS reshape2 saeRobust spdep stringr]; }; + emdi = derive2 { name="emdi"; version="2.2.1"; sha256="0wx8mrq07nl1djf7fcb0xg9vx64i9d3p6v7lyr1bb8hvqs47qc7g"; depends=[boot formula_tools ggplot2 gridExtra HLMdiag MASS moments MuMIn nlme openxlsx parallelMap readODS reshape2 rlang saeRobust spdep stringr]; }; emdist = derive2 { name="emdist"; version="0.3-3"; sha256="0jmnz612pjad3p1zk0qiljcbf0zbxfi4zcw2jqwg8ncjsifhr3mp"; depends=[]; }; emg = derive2 { name="emg"; version="1.0.9"; sha256="04sm05xnjns7wcvpk35ywkxy6g0mm84r060mkmzh64wq58c2q06l"; depends=[moments]; }; emhawkes = derive2 { name="emhawkes"; version="0.9.7"; sha256="0zhy1y80m548y9nbbjb2h795qky2637mxlqb548bakn7ps847qps"; depends=[maxLik]; }; emld = derive2 { name="emld"; version="0.5.1"; sha256="0cvnfvzskvpcqzs6fwrpjcqrc6yrfciliy9jj0c9h4iyag0g0b9b"; depends=[jsonld jsonlite xml2 yaml]; }; - emmeans = derive2 { name="emmeans"; version="1.8.9"; sha256="1ipzs88inyif52rbifqwrfv8vwxw8fwq2hb489vgws8xznhz034a"; depends=[estimability mvtnorm numDeriv]; }; + emmeans = derive2 { name="emmeans"; version="1.9.0"; sha256="18gib8ly7kfzdbi3srczrdqvjghf7swp127ksfs1fvs9dzgkkg96"; depends=[estimability mvtnorm numDeriv]; }; emoa = derive2 { name="emoa"; version="0.5-0.2"; sha256="0fr4ia3hkv8c7wkl64a51s6ynldppc812ynwldvbwy25dhlbvs6r"; depends=[]; }; emoji = derive2 { name="emoji"; version="15.0"; sha256="1xscypzz17a7nrajnl7isy2nrm9cyr97l0mi9vp0daqvzgyfajba"; depends=[glue stringr tibble]; }; emojifont = derive2 { name="emojifont"; version="0.5.5"; sha256="1hhrwilv36hd9gs1kcl2zsi6519md0h9aixjrm6lfclxvz8r6k1i"; depends=[ggplot2 proto showtext sysfonts]; }; emon = derive2 { name="emon"; version="1.3.2"; sha256="19khjjpyxvzhzihqq15w02l5v5ryyvxlklz1ch2gkmqcpnvyga32"; depends=[MASS mgcv]; }; emov = derive2 { name="emov"; version="0.1.1"; sha256="04w0bjyxvfb4ky573byp7j9b7x4gqycr5pgpnsl6rzag00zsf45a"; depends=[]; }; - empichar = derive2 { name="empichar"; version="1.0.0"; sha256="1hcl6wbf4saxxp54j2w67csv6nzfgc3f3wdd9lk9grmkxsaab4rx"; depends=[Rcpp RcppArmadillo]; }; + empichar = derive2 { name="empichar"; version="1.0.1"; sha256="0az7qxfnqrmxgd2591h49qs1w7iyzz6i490h4xn9gdzsplhpy1sw"; depends=[Rcpp RcppArmadillo]; }; emplik = derive2 { name="emplik"; version="1.3-1"; sha256="1f6v0bg9sl8kn4y8bpgjyc1b18xkmfbs86gbbmbh198v335lgcrb"; depends=[quantreg]; }; emplik2 = derive2 { name="emplik2"; version="1.32"; sha256="0d4fzyxa7kynxgx8187vqxnb25kv1m1pkawxdpng6nfaiy76w67m"; depends=[]; }; emplikAUC = derive2 { name="emplikAUC"; version="0.3"; sha256="0ifh661xknqin0k9vs92p00c4n6npkwn5cxyj970cj8l689yndrr"; depends=[emplik2 rootSolve]; }; ems = derive2 { name="ems"; version="1.3.11"; sha256="0xg4c6yhrnq5pfz94i1ys1bdqfz12h0wcs86fz4nm4pqfdbh41cc"; depends=[boot rms survival]; }; - emstreeR = derive2 { name="emstreeR"; version="3.0.0"; sha256="1rfgw9inkxg81ky31r51a8fc5nvwalrjp2nkx4p24l5k622fwmjb"; depends=[BBmisc ggplot2 mlpack scatterplot3d]; }; - emuR = derive2 { name="emuR"; version="2.4.1"; sha256="1qfdfgxfvdp9i9hyl2f461pw1bcbsz5znd6q4kqfi42m2dpz2dpv"; depends=[base64enc cli DBI dplyr httpuv httr jsonlite mime purrr readr rlang RSQLite rstudioapi shiny stringr tibble tidyr uuid V8 wrassp]; }; + emstreeR = derive2 { name="emstreeR"; version="3.1.2"; sha256="1l85pn8y463fn09cpm737kzal6k3ydiri38s90bhfw3i1gvzqggf"; depends=[ggplot2 mlpack scatterplot3d sf]; }; + emuR = derive2 { name="emuR"; version="2.4.2"; sha256="1v8zjdd3w9vplnpx1bxy7zdxpk6k297bzazz0ic9nyb449ldvl8w"; depends=[base64enc cli DBI dplyr httpuv httr jsonlite mime purrr readr rlang RSQLite rstudioapi shiny stringr tibble tidyr uuid V8 wrassp]; }; emulator = derive2 { name="emulator"; version="1.2-21"; sha256="0iikf6yinkqcgdnxx6v5kzfllhq3ppl75ym48vlcbnvkwv0v4l4v"; depends=[mvtnorm]; }; enc = derive2 { name="enc"; version="0.2.2"; sha256="16x8cckw0ah2yfczvv4j1jy4f8m23fkac38fz068964sv4l8z645"; depends=[]; }; encode = derive2 { name="encode"; version="0.3.6"; sha256="04zwclmqasbx54m77wqfr9jg4axhkkqnykaxv3if8lnr46fl3zyc"; depends=[]; }; @@ -9228,12 +9395,12 @@ in with self; { enerscape = derive2 { name="enerscape"; version="1.0.0"; sha256="103zikp56kbr64y6198xic401dc1nal34walfzwry73y0g7gmz69"; depends=[Rcpp terra]; }; enetLTS = derive2 { name="enetLTS"; version="1.1.0"; sha256="1lah9ai9skshz0rq3r1smvy69j443m22h1dihl42gy2568998q4v"; depends=[cvTools ggplot2 glmnet reshape robustbase robustHD]; }; english = derive2 { name="english"; version="1.2-6"; sha256="1g3nmy5p8wj3ix1vp1qmkmy3dyqisrw0md8cjrx4klqkp0wqlms9"; depends=[]; }; - engression = derive2 { name="engression"; version="0.1.3"; sha256="0x2mfyqpbr1bd73llm69yspw0bp1hfv7gjlwmpslnzym1ry8if1b"; depends=[torch]; }; + engression = derive2 { name="engression"; version="0.1.4"; sha256="030fcjh7cwjqiydyxjhaa7rsc2wq50ywdyp4wd2cr7glpy1fl346"; depends=[torch]; }; enmSdmX = derive2 { name="enmSdmX"; version="1.1.2"; sha256="15pdsva011dpa72ms7c6fdhadzcm603wzglfy9hg63krirvmfwkh"; depends=[boot data_table dismo doParallel DT foreach gbm ks maxnet mgcv MuMIn omnibus ranger rJava scales sf shiny statisfactory terra]; }; + enmpa = derive2 { name="enmpa"; version="0.1.5"; sha256="0r7zr3xgx1w9570965bm13rw24647y47kab313lqb01nwd9vn2vn"; depends=[doSNOW ellipse foreach mgcv Rcpp snow terra vegan]; }; enpls = derive2 { name="enpls"; version="6.1"; sha256="12088v9xnj5b3dlakqz1hbzxz4mdai7xi7s2fpx8lj3y3lx7znmb"; depends=[doParallel foreach ggplot2 plotly pls reshape2 spls]; }; enrichR = derive2 { name="enrichR"; version="3.2"; sha256="1g97q6vqwvb2l02y61343sblarqi433gjl3qmlyxjxq2lnjrnak1"; depends=[curl ggplot2 httr rjson WriteXLS]; }; enrichwith = derive2 { name="enrichwith"; version="0.3.1"; sha256="05fhx323ani86wdxbjp8dgw4d1iq4kr1887646w072a6iq93bwhm"; depends=[]; }; - ensemblQueryR = derive2 { name="ensemblQueryR"; version="0.1.0"; sha256="0yz7c8lvy9hivm60brx72iph36jrx5d11i9fbdhbl2l3gi4w0fbd"; depends=[dplyr httr jsonlite magrittr purrr rlang tibble tidyr vroom xml2]; }; ensembleBMA = derive2 { name="ensembleBMA"; version="5.1.8"; sha256="1bb2f7pkwq4dza8fkag3802yflzcsfma4cnwhfw1qgg227sfy8d9"; depends=[chron]; }; ensembleMOS = derive2 { name="ensembleMOS"; version="0.8.2"; sha256="16d8030zfdwifqrh45vz3gf5n0bix0mhsmsnydgjq1fghdklcmyx"; depends=[chron ensembleBMA evd]; }; ensembleR = derive2 { name="ensembleR"; version="0.1.0"; sha256="0xvq1jlsp7gsk46i847nfvadxwlh09gi2rgwss2wf2xmh1855ray"; depends=[caret]; }; @@ -9255,19 +9422,21 @@ in with self; { envnames = derive2 { name="envnames"; version="0.4.1"; sha256="1fkbid2x60m63dnrxrdq7im49spn8m70g1gd8nqjq3xlv642ianm"; depends=[]; }; envoutliers = derive2 { name="envoutliers"; version="1.1.0"; sha256="1wgrrkkpkmf300qb56mq6nxigwnpq551sjxlk05lk3ckawx66srf"; depends=[car changepoint ecp ismev lokern MASS robustbase]; }; envstat = derive2 { name="envstat"; version="0.0.3"; sha256="07y4bprb9mi37d8pg6xr1x4rkgjza2iq5hpr8a1iv584sgbjl4ah"; depends=[cli httr2 rstudioapi yaml]; }; + envvar = derive2 { name="envvar"; version="0.1.0"; sha256="0qj1aaxkvrjy6wyds38b956zfpp438pw0p4cw00h0i8ww9ljyrs4"; depends=[cli fs lubridate rlang]; }; eoR = derive2 { name="eoR"; version="0.4.0"; sha256="0vn4s4af94n9h6x7z14qwpz94rgsd5m3mv55wva7x3h99ryhm83s"; depends=[data_table]; }; eoa3 = derive2 { name="eoa3"; version="1.0.0.1"; sha256="1qqdkxg4jsnqn6j0pa73g3as3hv9y2xh2jg2axj0i11jr5x68ars"; depends=[actuar GenEst MASS rjags survival VGAM]; }; + eodhd = derive2 { name="eodhd"; version="1.0.3"; sha256="0rq6xn198l5a0kzygb1mdghvax73v5s815vylmak3khz02lc8i00"; depends=[httr]; }; eoffice = derive2 { name="eoffice"; version="0.2.2"; sha256="0nxyllragxn5bq28x37vkx16vi4y9af5nly1pslqrvvarl21ics4"; depends=[broom devEMF dplyr flextable ggplot2 ggplotify htmlwidgets magick magrittr officer plotly R_devices rvg]; }; epade = derive2 { name="epade"; version="0.5.1"; sha256="05g41lslw77v8r2914vpf92348hcyfx7xqbbwknfhl1xld9rk2iz"; depends=[Hmisc plotrix survival]; }; epandist = derive2 { name="epandist"; version="1.1.1"; sha256="0hxgbjns5bk82rgcmykxifnnxcnqdzmkimkkmpdif64zr5g3gjdg"; depends=[]; }; - epanet2toolkit = derive2 { name="epanet2toolkit"; version="0.7.0"; sha256="0fcr3awbbsp4ihzw0b9z27glsp0h659g4ihmcxp5qgi1xkh4cc8r"; depends=[]; }; + epanet2toolkit = derive2 { name="epanet2toolkit"; version="1.0.4"; sha256="0xmaifvj9r3q634rb9rbpvrn4klsxf14scbv8150s1s6dvvb0f5i"; depends=[]; }; epanetReader = derive2 { name="epanetReader"; version="0.7.3"; sha256="05pwa6z03qsjwr9pxpbxycsd21p7mf5j5ajyg4yaas5g100s1k8c"; depends=[]; }; epca = derive2 { name="epca"; version="1.1.0"; sha256="0ikncmrvcdixa209lrjb84rdsl78isi815a461i7lfmmln9myqk2"; depends=[clue GPArotation irlba Matrix]; }; epe4md = derive2 { name="epe4md"; version="0.1.4"; sha256="12arly1kcpcg0ym3rq8am7l4nchwl97vy3yp6vamc4sbv01w18a5"; depends=[assertthat dplyr fabletools feasts forcats furrr future ggplot2 janitor jrvFinance lubridate magrittr purrr readr readxl scales stringr tibble tidyr tsibble zoo]; }; eph = derive2 { name="eph"; version="1.0.0"; sha256="1gr0j5xxdmi10d4n742r9764134fsh0xxqdfz5jk5df1z16wh7g2"; depends=[attempt cli curl dplyr expss htmltools httr leaflet purrr readxl rlang stringr tibble tidyr tidyselect zoo]; }; epiCleanr = derive2 { name="epiCleanr"; version="0.2.0"; sha256="1m5qz7qkly9waj1w8x0hrz28cc4vzn6psqs4q39x1fhxlgip0rih"; depends=[countrycode crayon dplyr ggplot2 glue janitor purrr rio rlang stringr tibble tidyr tidyselect withr]; }; epiDisplay = derive2 { name="epiDisplay"; version="3.5.0.2"; sha256="0430mwnaa0qamdyvmwkh37ic0kp4hq8mr5nxkc97mhhl7djw0y92"; depends=[foreign MASS nnet survival]; }; - epiR = derive2 { name="epiR"; version="2.0.65"; sha256="15kfy9wyadwd0njslb7fhkmf5dmvwbqn7a2v620cl2c87kk0hja5"; depends=[BiasedUrn flextable lubridate officer pander sf survival zoo]; }; + epiR = derive2 { name="epiR"; version="2.0.67"; sha256="1386kn6b8xn8qr8ppr88i6cin49w1qs7a3ff1qprsblsmvicijd7"; depends=[BiasedUrn flextable lubridate officer pander sf survival zoo]; }; epibasix = derive2 { name="epibasix"; version="1.5"; sha256="0ivr51x37cbdryli9b4p4iq9v2c90zwmywrwdmg7ryq5vprvvbp0"; depends=[]; }; epicasting = derive2 { name="epicasting"; version="0.1.0"; sha256="191kxjrr8h44i7a7dpxziqhbcnbmhgcc5b7ddn9cnvvjqmbwmvl2"; depends=[forecast Metrics wavelets]; }; epicontacts = derive2 { name="epicontacts"; version="1.1.3"; sha256="0y97l288ncj0svk1gnxjr4q58rvhbn6wblm7jbhff4n4544yd4f7"; depends=[colorspace dplyr igraph threejs visNetwork]; }; @@ -9281,18 +9450,20 @@ in with self; { epilogi = derive2 { name="epilogi"; version="1.0"; sha256="0p5aidj9xmlw6lyb4bscb7xkjkfs4jmc4ax844bhsgl6v2y91n6b"; depends=[Rfast]; }; epimdr = derive2 { name="epimdr"; version="0.6-5"; sha256="1nxdlz7gl9vrha9iw92y0s9dmm101gkz0rsqxqg1rdxanr6hs6sh"; depends=[deSolve polspline shiny]; }; epimdr2 = derive2 { name="epimdr2"; version="1.0-9"; sha256="1lx1zibp2ziwdyj180jf9y5xczfs2xfkb5bw7q4f7i9p70jlqcrz"; depends=[deSolve ggplot2 phaseR plotly polspline shiny]; }; - epinet = derive2 { name="epinet"; version="2.1.8"; sha256="10bgq66n99kkz0nhmsz508aypxk57zk19p5l3xrb28n72k4rfgrf"; depends=[network]; }; + epinet = derive2 { name="epinet"; version="2.1.11"; sha256="0qcwmn2p6rfjzh5fhmgrk6jrs1q1409720qgwhzkl8pwcizry2xy"; depends=[network]; }; epinetr = derive2 { name="epinetr"; version="0.96"; sha256="0jg8pwbxlgrk7mqawsrifk724pi5qn0amh6x2fq54a0hmqdpdjns"; depends=[GA ggplot2 igraph Rcpp RcppAlgos reshape2 vcfR]; }; epiomics = derive2 { name="epiomics"; version="1.0.0"; sha256="06rk2ccnzanxjy0y1lrjya8w2mrnkki12s2mcp4pqn42a664clkx"; depends=[data_table ggplot2 ggrepel lme4 lmerTest qgcomp survival]; }; + epiphy = derive2 { name="epiphy"; version="0.5.0"; sha256="08jvbmj6l90102cpf00h5dzq7a700zwvy31wz7d5lxfn91x83gb9"; depends=[ggplot2 msm pbapply Rcpp transport]; }; episcan = derive2 { name="episcan"; version="0.0.1"; sha256="02687f8gpc2czn19lapvazd6mnm8902ay0lhgi3wdrzfhir42m4r"; depends=[]; }; episensr = derive2 { name="episensr"; version="1.3.0"; sha256="0jah8lwmgc7nfacw3nzlnfmrmh1hfnwpjdsvy928pvgh0rsamxvc"; depends=[actuar boot dagitty ggdag ggplot2 magrittr trapezoid triangle]; }; epitab = derive2 { name="epitab"; version="0.2.2"; sha256="0yi65bblsikwsa9i7wys1mqf6pp6j01kyc8xkyrhs5n62y1k68nc"; depends=[kableExtra knitr MASS survival xml2]; }; epitools = derive2 { name="epitools"; version="0.5-10.1"; sha256="0jqn3pas4lsans50jwakmvpyc7m7x0kxq6dzyckd3vgww56qa65l"; depends=[]; }; epitrix = derive2 { name="epitrix"; version="0.4.0"; sha256="08cz2p9xxa966a2v8kay00l3pmgfgmwzlh5pnx04s19rmar13z02"; depends=[distcrete dplyr purrr rlang sodium stringi tidyr]; }; + epitweetr = derive2 { name="epitweetr"; version="2.2.16"; sha256="0xniwd6r1jyn2ifw8y4d9c3dl4maik6p4lw0nghb9z9q9xigjlak"; depends=[bit64 crul curl dplyr DT emayili future ggplot2 htmltools httpuv httr janitor jsonlite keyring knitr lifecycle magrittr openxlsx plotly plyr processx readxl rlang rmarkdown rnaturalearthdata rtweet shiny sp stringr tibble tidytext tidyverse xml2 xtable]; }; epiworldR = derive2 { name="epiworldR"; version="0.0-3"; sha256="0x148iw1kf4jl75dm4ywdh5x8sy20pf2nm80fw5ha36vw14948a3"; depends=[cpp11]; }; eplusr = derive2 { name="eplusr"; version="0.16.2"; sha256="1b9kqrma6ayzsj146fdb2w2pwzmz1r6yy9g0abhx745gll8g9gqr"; depends=[callr checkmate cli data_table lubridate processx R6 RSQLite stringi units]; }; eply = derive2 { name="eply"; version="0.1.2"; sha256="0al44pvqf6ls3dh129vlv3g56hk1nbql09rj0qsb04d9kaz9anrp"; depends=[magrittr]; }; - epm = derive2 { name="epm"; version="1.1.1"; sha256="1n4q0gnwq4jrsy8gir1x5m0ijlk2nwinlavf05g947l1yx1kq06b"; depends=[ape pbapply Rcpp RcppProgress sf terra viridisLite]; }; + epm = derive2 { name="epm"; version="1.1.2"; sha256="1zziy07ydrxma5qhnxha5g2zm02yi6bvw2vv3w6sanrj9p4kakav"; depends=[ape pbapply Rcpp RcppProgress sf terra viridisLite]; }; epmrob = derive2 { name="epmrob"; version="0.1"; sha256="01xi5zss4pvljk92p7gjnd11i730jhwrhibqk9p0ya1kpgd9bm31"; depends=[MASS robustbase]; }; epo = derive2 { name="epo"; version="0.1.0"; sha256="1vmqgpr5f87n7qxvblp4m58z0l18sm8cc3i66cwk36rvcfxd8ik2"; depends=[assertthat dplyr rlang xts]; }; epoc = derive2 { name="epoc"; version="0.2.6-1.1"; sha256="1qlj4cl7mh5k52v2ippfs3cish5iadnix5w46p25hjqiriksclna"; depends=[elasticnet irr lassoshooting Matrix survival]; }; @@ -9305,7 +9476,7 @@ in with self; { epubr = derive2 { name="epubr"; version="0.6.4"; sha256="0cv1zkv27ab4h2lq8s4lgizvdrw0238lr042aw8rns27zbqz7is1"; depends=[dplyr magrittr tibble tidyr xml2 xslt]; }; epwshiftr = derive2 { name="epwshiftr"; version="0.1.3"; sha256="11vfs2r2fzbdd3r0s8ikafgq9ins06ym73wqxyijz60h75py4ic7"; depends=[checkmate data_table eplusr fst future_apply jsonlite progressr psychrolib rappdirs RNetCDF units]; }; epxToR = derive2 { name="epxToR"; version="0.4-1"; sha256="00m64ham9fd9dsw37ic2m62fy4pvmwfwmjx8cg6n4rwbgq9q49sg"; depends=[httr XML]; }; - eq5d = derive2 { name="eq5d"; version="0.15.0"; sha256="0v68vvka68mdq8y4mjkkpiarrkdvzgs1zli1l4nyca5h0r322x2r"; depends=[]; }; + eq5d = derive2 { name="eq5d"; version="0.15.1"; sha256="1flm66xyq5pa306zc5jpnqnq19d0npzh1a8shg201aqyg9f996jg"; depends=[]; }; equalCovs = derive2 { name="equalCovs"; version="1.0"; sha256="18w7panyd6mhdr3x1iz9fkrw7min22rishs4xhkxgxs3nnyglkrn"; depends=[]; }; equaltestMI = derive2 { name="equaltestMI"; version="0.6.1"; sha256="09wh4907vf54z3g2a1i1j4m5vkaz97jp3qyrmxbg0bbbq0c68ffg"; depends=[lavaan]; }; equatags = derive2 { name="equatags"; version="0.2.0"; sha256="039v1lj8ydw3lji8ycklbprd569f7g0lc11sb2ij262wlr0prm1m"; depends=[katex xml2 xslt]; }; @@ -9317,26 +9488,26 @@ in with self; { equivalence = derive2 { name="equivalence"; version="0.7.2"; sha256="170l5gnk0dkjkfsx7qyrw56ircwsjzz9cvhakgyrqh7bj5734i79"; depends=[boot lattice PairedData]; }; equivalenceTest = derive2 { name="equivalenceTest"; version="0.0.1.1"; sha256="1lr1qc4mv8f9hwqidj1rwhxqm1fb8cf1hnb1k32xpdqwzsxbfa47"; depends=[cubature polynom Rdpack rootSolve]; }; era = derive2 { name="era"; version="0.4.1"; sha256="10hrbdxdvfgz8namczzfwwdhzwf5gsfv6jp9ikiasmjdlyn9jpps"; depends=[pillar rlang vctrs]; }; - erah = derive2 { name="erah"; version="1.1.2"; sha256="0dyjb2ja5199z8is11in11a95l2dbhaa2qj42pikh0ydk47qhd6v"; depends=[igraph ncdf4 nnls quantreg Rcpp signal XML]; }; + erah = derive2 { name="erah"; version="2.0.1"; sha256="136wh0gaygc7mkj507bjmgzv79jcap0whngd501gg47zf7b8jzxx"; depends=[furrr future HiClimR igraph osd progress quantreg signal tibble]; }; ercv = derive2 { name="ercv"; version="1.0.1"; sha256="0rs4yhm9sjnqkrgqqy6b8wj9fgk910hxc8d7zi4qwql0v1gid27l"; depends=[]; }; erer = derive2 { name="erer"; version="3.1"; sha256="03pdq3p5c5f20959hgk5q2cx5x10bpgf0qg4z1nvsf31vc5ni77v"; depends=[lmtest systemfit tseries urca]; }; erfe = derive2 { name="erfe"; version="0.0.1"; sha256="1v6xca2zwdg494mdb97dwg2xlqsr51919plylnl04d8dgg5adhz9"; depends=[Matrix mvtnorm]; }; - ergMargins = derive2 { name="ergMargins"; version="0.1.3.1"; sha256="18axdfg7nf2dcbm2hbpjkx821nrg8c97jn5nny2110cja9vi0qgw"; depends=[btergm ergm Matrix network numDeriv]; }; - ergm = derive2 { name="ergm"; version="4.5.0"; sha256="0lb3gdjnphgi8y478l98zrjjlr99f35ia9m6cn6m2h5n6nywfwik"; depends=[coda knitr lpSolveAPI magrittr MASS Matrix memoise network purrr Rdpack rlang rle robustbase statnet_common stringr tibble trust]; }; + ergMargins = derive2 { name="ergMargins"; version="1.1"; sha256="0p5pcbl4l6z58lkqhbynyzvcbina6457i2x97vpck41mrzhji8jh"; depends=[btergm dplyr ergm Matrix network numDeriv sampling sna]; }; + ergm = derive2 { name="ergm"; version="4.6.0"; sha256="1xx767l4z38wkxlxwq62y4khjjsz10fsy36x0s74fnzb746acwdl"; depends=[coda knitr lpSolveAPI magrittr MASS Matrix memoise network purrr Rdpack rlang rle robustbase statnet_common stringr tibble trust]; }; ergm_count = derive2 { name="ergm.count"; version="4.1.1"; sha256="0cj9jdxxpkgvs658nxxndd9pbxb7l52vzhipkjiimd6q99hr6s24"; depends=[ergm network statnet_common]; }; ergm_ego = derive2 { name="ergm.ego"; version="1.1.0"; sha256="1wflvj946xkiy0xzq53x13v9iqj64hc7wcqzqazkvlngigibh5gl"; depends=[dplyr egor ergm network purrr RColorBrewer statnet_common survey tibble]; }; ergm_multi = derive2 { name="ergm.multi"; version="0.2.0"; sha256="0npvfkzba1ik5h6s5rqkkway0jhf6smcqvywng7hjzq8kfjppqhk"; depends=[ergm glue Matrix network purrr Rdpack rlang rle statnet_common tibble]; }; ergm_rank = derive2 { name="ergm.rank"; version="4.1.0"; sha256="1ivwqlyx48smm9dmam9z0x6yqhmy1ypmmhzfhs5j3pq5vfwfc87c"; depends=[ergm network statnet_common]; }; - ergmgp = derive2 { name="ergmgp"; version="0.1"; sha256="0naibi232qg8ppwmp5fc7fshdr6czp4fzpzg80n0i5sv1m6alsk9"; depends=[ergm network networkDynamic statnet_common]; }; + ergmgp = derive2 { name="ergmgp"; version="0.1-1"; sha256="0463wg1g1vd14fwgnvm8aa20vvklvpaqdv4wn6jaybmn8y7kxi16"; depends=[ergm network networkDynamic statnet_common]; }; ergmharris = derive2 { name="ergmharris"; version="1.0"; sha256="1bfijhsljlykb94wi25lbpv35zkmgqpmgzmxcq98gjvzbn5j9pdq"; depends=[]; }; ergmito = derive2 { name="ergmito"; version="0.3-1"; sha256="0djcfwxr4diwfjvim6mbz1g28bzsd94s78xw5kvn5vahiwjpdd61"; depends=[ergm MASS network Rcpp RcppArmadillo texreg]; }; erify = derive2 { name="erify"; version="0.4.0"; sha256="014q4crfa92i4fb4mrbl68ai0l8asjwwnv3l2m11gfnny41p4bks"; depends=[glue]; }; erp_easy = derive2 { name="erp.easy"; version="1.1.0"; sha256="193n45w0rq3cy0nmxvv0h6s3yr8kfjlg90nd4dnqlsq85zlsizij"; depends=[gtools plyr signal]; }; err = derive2 { name="err"; version="0.2.0"; sha256="1915b0vmqdd8whwdrqjphld1jaxawh5b7di6wf7q3sx779lblsrs"; depends=[]; }; errint = derive2 { name="errint"; version="1.0"; sha256="1ya7fsvwhmgxw87r32m4345n8pw2pbpv026xvml03s1kiam8qwbw"; depends=[rootSolve VGAM]; }; - errorist = derive2 { name="errorist"; version="0.1.1"; sha256="0rsiyqpr7nw4mz2bccymp83lbqwyigyy7pqgxc1wkmshzdqhvjgh"; depends=[searcher]; }; + errorist = derive2 { name="errorist"; version="0.1.2"; sha256="195c8bbxi22l9qyhj4ndjmwhcmk2b019vxcggsp2iaas48y4v6wi"; depends=[searcher]; }; errorlocate = derive2 { name="errorlocate"; version="1.1.1"; sha256="1qml2qd63iqswb0zvnx9m3ia0zq7q20ycllhds3bwa4fwg25pfsp"; depends=[lpSolveAPI validate]; }; - errors = derive2 { name="errors"; version="0.4.0"; sha256="15hmsyfcsjy33601a7v2r7sfk2kxbm4a8xwkgjppmf84vhpqplbx"; depends=[]; }; + errors = derive2 { name="errors"; version="0.4.1"; sha256="0pyp1adhyp5kak4x9niyj3ncmda1xydsx2sfa7gjbm2fzazyslbh"; depends=[]; }; errum = derive2 { name="errum"; version="0.0.3"; sha256="18frrfnhnmg4fjlpfwj8aklzfwafpwqvagm0aschkqc8mz6wnjbz"; depends=[Rcpp RcppArmadillo]; }; es_dif = derive2 { name="es.dif"; version="1.0.2"; sha256="1swxg8mdp9jj9f0x0cawhhbx8gmmpsgqlbifx2v04a2vkgdkigqf"; depends=[]; }; esDesign = derive2 { name="esDesign"; version="1.0.3"; sha256="0lnz40d8s9pmxccsbd9g80n0k454xgicjfdpbfrq7rnyb4pdk9l2"; depends=[]; }; @@ -9364,9 +9535,10 @@ in with self; { estatapi = derive2 { name="estatapi"; version="0.4.0"; sha256="0wp5w9w0b832fnl7kchjqmychnf5896q50grw8hwdc1km14dfzkg"; depends=[dplyr httr purrr readr rlang tibble]; }; estimability = derive2 { name="estimability"; version="1.4.1"; sha256="090i1xwdp4fwj8jr8nk13w49516lfkk5mq1w7l0lff9g8lgaynn6"; depends=[]; }; estimateW = derive2 { name="estimateW"; version="0.0.1"; sha256="0fgbyfnxxs6kp9p17ljvj72q5vd4xn7kwh4zbmzjx45cdq101bjv"; depends=[Matrix matrixcalc plot_matrix R6]; }; + estimators = derive2 { name="estimators"; version="0.7.3"; sha256="11aw3g85hivmid88fc13gh14jarmbpp717sqpsyisz4pvwv9zkqv"; depends=[distr ggh4x ggplot2 Matrix progress]; }; estimatr = derive2 { name="estimatr"; version="1.0.0"; sha256="1px9j7nlxgx5g7fi57hpx0fsjxhkwjcxbkic0lqf1m3pgxxcxj59"; depends=[Formula generics Rcpp RcppEigen rlang]; }; estimraw = derive2 { name="estimraw"; version="1.0.0"; sha256="0z591mblbzc3qv9pyv8zn0r5r3d8f1l02sxdc649gl1lb40kalz0"; depends=[dplyr]; }; - estmeansd = derive2 { name="estmeansd"; version="1.0.0"; sha256="1jmi78gmddhqpg3n7jywkbsq8amxa641s8rhzzg6jmmh4w09dg9s"; depends=[metaBLUE]; }; + estmeansd = derive2 { name="estmeansd"; version="1.0.1"; sha256="0wshkcqdajysymy765d5gg9z9bxdsy59h2rw0ls19nlf0dbj4z6s"; depends=[metaBLUE]; }; estprod = derive2 { name="estprod"; version="1.2"; sha256="0pnpg8w6i1dmkcn6afj2jsm5mzvbxka80np1bldcxgmylrp5s35p"; depends=[boot Formula gmm lazyeval minpack_lm]; }; esvis = derive2 { name="esvis"; version="0.3.1"; sha256="0bb91khnrn8v3d6hbbin72032w7w8p0jchbr0bzwyfq5f6l4hwka"; depends=[dplyr ggplot2 Hmisc magrittr purrr rlang sfsmisc tibble tidyr]; }; et_nwfva = derive2 { name="et.nwfva"; version="0.1.1"; sha256="01jhy5043axgmv51ri2k3gl1shvsh569h9xy4y1ya1qjpdlbv0ky"; depends=[]; }; @@ -9380,7 +9552,7 @@ in with self; { etree = derive2 { name="etree"; version="0.1.0"; sha256="1qnky9jqcfbq60s4h3igyq77r7f559i714i5g7ss14zcx86zkpdi"; depends=[brainGraph cluster energy fda_usc igraph NetworkDistance partykit survival TDA usedist]; }; etrm = derive2 { name="etrm"; version="1.0.1"; sha256="0jzwvz2ddh3w4y1kgqwdj7py376w6dwbvqhjmiiikr7qsgap23fk"; depends=[ggplot2 reshape2]; }; etrunct = derive2 { name="etrunct"; version="0.1"; sha256="0ayazgyqlc8jcqr03cwfmfhm4pck6xri1r6vkgqy4arqkrrnrcqr"; depends=[]; }; - etwfe = derive2 { name="etwfe"; version="0.3.4"; sha256="0a3q4q27k1rlfbcinxv9kgprxndvrb6sxfz6fc44gm983v926ych"; depends=[data_table fixest Formula marginaleffects]; }; + etwfe = derive2 { name="etwfe"; version="0.3.5"; sha256="16zd86b50fv42jxq4dd4ah08avyp62h585852qrkqcjnb82dk761"; depends=[data_table fixest Formula marginaleffects]; }; eudract = derive2 { name="eudract"; version="0.10.2"; sha256="1y5n22wbqpq1wrdhlf35mjlxcqq4nwrmivps81d6p0nnca84fhyc"; depends=[dplyr ggplot2 gridExtra httr magrittr scales tidyr xml2 xslt]; }; eufmdis_adapt = derive2 { name="eufmdis.adapt"; version="0.1.0"; sha256="0n8qj5dhc32ckbjiwvcfc904j9jilyb87x325a2vbgb35gfhf7sn"; depends=[dplyr DT ggplot2 htmltools magrittr rlang shiny shinydashboard shinyWidgets tibble tidyselect]; }; eulerian = derive2 { name="eulerian"; version="1.0"; sha256="0yhpnx9vnfly14vn1c2z009m7yipv0j59j3s826vgpczax6b48m0"; depends=[graph]; }; @@ -9393,19 +9565,20 @@ in with self; { europeanaR = derive2 { name="europeanaR"; version="0.1.0"; sha256="11cr8n64yv50zwib9wkvk1j43p9a1cmxmzznxykczv43l193kjg7"; depends=[data_table httr jsonlite magrittr Rdpack]; }; europepmc = derive2 { name="europepmc"; version="0.4.3"; sha256="160rvp4yl5myccasyzaq8qhgxwv858y1wdwyrmnrmn3va8s5b515"; depends=[dplyr httr jsonlite plyr progress purrr rlang tibble tidyr urltools xml2]; }; europop = derive2 { name="europop"; version="0.3.1"; sha256="1ym257bxr4a0dmln1j8x3pf87wrryzgqyzhvk61whc6n2bj62x1s"; depends=[]; }; - eurostat = derive2 { name="eurostat"; version="3.8.2"; sha256="1djrika4mlwqqlcj9cwkpyc24k1i8vmnm1qh5ipqwp54nbwin964"; depends=[broom classInt countrycode curl dplyr httr ISOweek jsonlite lubridate rappdirs readr RefManageR regions stringi stringr tibble tidyr]; }; + eurostat = derive2 { name="eurostat"; version="4.0.0"; sha256="13na6hdwz67f27vd3kvh6brxwxdf76sii0gf2r73ncs6db16q4pm"; depends=[classInt countrycode curl data_table digest dplyr httr2 ISOweek jsonlite lubridate rappdirs readr RefManageR regions rlang stringi stringr tibble tidyr xml2]; }; eva = derive2 { name="eva"; version="0.2.6"; sha256="1b5hrwgdbw19c63ywhkvxlz3843c0mgvsxlmab6zv6r2lrrdkf62"; depends=[EnvStats Matrix]; }; evabic = derive2 { name="evabic"; version="0.1.1"; sha256="0f34shsacf9lyb2hlp2f0nhqy2ihy1zqg52npx8ap2li0s4y0x24"; depends=[]; }; evalITR = derive2 { name="evalITR"; version="1.0.0"; sha256="0szrqcvi9x0wqxlyi1qyzpkj4y93qym8295nddip9ncl67kh2w09"; depends=[bartCause caret cli dplyr e1071 forcats gbm ggdist ggplot2 ggthemes glmnet grf haven MASS Matrix purrr quadprog rlang rpart rqPen scales SuperLearner]; }; evalR = derive2 { name="evalR"; version="0.0.1"; sha256="0gb9bi9kfpqv0asbrcz2kdf1grxbjipdq97jmlgbzr5rn9jski01"; depends=[Rcpp]; }; - evaluate = derive2 { name="evaluate"; version="0.22"; sha256="0sz4zimz4brbd9sawdazfgipkmfzzdmdq01b5m8pnrql5xrxhiwh"; depends=[]; }; - evclass = derive2 { name="evclass"; version="2.0.1"; sha256="1v5qnv5nah633s4ibpsigqbd6ydxpr6l8mqwprwjr7khrnckrli4"; depends=[FNN ibelief R_utils]; }; - evclust = derive2 { name="evclust"; version="2.0.2"; sha256="107x61vmkfmy3bmcaywz96qj35bmz4nydd0zn9amm2xnbb37lg31"; depends=[FNN limSolve Matrix mclust plyr quadprog R_utils]; }; + evaluate = derive2 { name="evaluate"; version="0.23"; sha256="0p540jl6sixpgk08cp2h9470d28p7n66pfafiskvz3rba0vrrky9"; depends=[]; }; + evapoRe = derive2 { name="evapoRe"; version="1.0.0"; sha256="1a50pi9vch15cl5c3jb43slfdb7k0aa4s4pdx75va9icg738fiby"; depends=[data_table doParallel foreach lubridate pRecipe raster]; }; + evclass = derive2 { name="evclass"; version="2.0.2"; sha256="0khiifgfag8a6nsznnjr7h1vj5v2nzidv0qrkxlg12i42bg3xqpj"; depends=[FNN ibelief R_utils]; }; + evclust = derive2 { name="evclust"; version="2.0.3"; sha256="0z707x770rp7y3sii4w0xk61is2ib79mix14x48n942vb11mc91b"; depends=[FNN limSolve Matrix mclust plyr quadprog R_utils]; }; evd = derive2 { name="evd"; version="2.3-6.1"; sha256="0wc95hfj0gwkyghipdrhwd3s6q2agh9x2wy6y7dr6mjw7wnmjb36"; depends=[]; }; evdbayes = derive2 { name="evdbayes"; version="1.1-3"; sha256="1adlwyr1csjmwcpc7jsywzggpvr3fk500hyahzy774jmgj3j09vh"; depends=[]; }; event = derive2 { name="event"; version="1.1.1"; sha256="0w3v8j61y7vr0cjl8a1rkvi4pyjlfhmzzn1n4dgkivac4iafzqjj"; depends=[rmutil]; }; eventInterval = derive2 { name="eventInterval"; version="1.3"; sha256="0nybzy2mpmazcvz06mkv7l9741mjm3i2q2sindq0777vb2k4504v"; depends=[MASS]; }; - eventPred = derive2 { name="eventPred"; version="0.2.1"; sha256="0za034b2ypf9ll11j1ykhpn64il3nzi2a276qd2ay44vr98jkhgi"; depends=[dplyr erify flexsurv Matrix mvtnorm numDeriv plotly rlang rstpm2 survival tmvtnsim]; }; + eventPred = derive2 { name="eventPred"; version="0.2.3"; sha256="1kc8szppic8igmc1sbi922fkngcgrl7mvg1mj3fvcfrk2km9qvmr"; depends=[dplyr erify flexsurv Matrix mvtnorm numDeriv plotly purrr rlang rstpm2 survival]; }; eventTrack = derive2 { name="eventTrack"; version="1.0.3"; sha256="095xmsb0q32bk52q2130766irbcggbrvcliklaar3qg8v7p3dl4g"; depends=[muhaz survival]; }; eventdataR = derive2 { name="eventdataR"; version="0.3.1"; sha256="04hji0s5vglq60mv4kf368ny749rfr3hqlm78ch1dqh0f0nknk8q"; depends=[]; }; eventglm = derive2 { name="eventglm"; version="1.2.2"; sha256="0f9vmm47g6cfvspil44zki2isd49zy6hx4cvl3vqksj57pbw8g0p"; depends=[geepack sandwich survival]; }; @@ -9423,17 +9596,17 @@ in with self; { evoTS = derive2 { name="evoTS"; version="1.0.2"; sha256="104lb598rkm17n1as1g32va5aa285b86j4ac3wg4dxp8ckzl738d"; depends=[MASS mvtnorm paleoTS plotly pracma]; }; evobiR = derive2 { name="evobiR"; version="1.1"; sha256="0502xj1gv2g943vfqyllz4sr5z4mixf5vqlqi2v96mymnv9iwsr8"; depends=[ape geiger phytools seqinr shiny]; }; evolMap = derive2 { name="evolMap"; version="1.2.33"; sha256="1wcm6d96mvp8yr6qjm3610rzdxjq6vjwz3zmbrimc1q4pwxg0rvd"; depends=[curl jsonlite sf]; }; - evolqg = derive2 { name="evolqg"; version="0.3-3"; sha256="0d0rjpyhwk81r5imbk6836a1qk2q333d0s73zjj6k6cfx31zh7l9"; depends=[ape coda expm ggplot2 igraph Matrix MCMCpack Morpho mvtnorm numDeriv plyr Rcpp RcppArmadillo reshape2 vegan]; }; + evolqg = derive2 { name="evolqg"; version="0.3-4"; sha256="1h4k2sxp67f3qn1cnmy290rgbmpvvj2zlw7gz5lbcgzbf53lb1bd"; depends=[ape coda expm ggplot2 igraph Matrix MCMCpack Morpho mvtnorm numDeriv plyr Rcpp RcppArmadillo reshape2 vegan]; }; evolvability = derive2 { name="evolvability"; version="2.0.0"; sha256="0l81d48zvvnbxlx1mj4qwga1kdzk05pzdvsp4ghi93pzzynfqn9s"; depends=[ape coda lme4 Matrix]; }; evoper = derive2 { name="evoper"; version="0.5.0"; sha256="064fcpd04ws8v6sl0bakiw34jmmfpg1w5pkq94y2gh1c576x4vwz"; depends=[boot data_table deSolve futile_logger ggplot2 plot3D plyr reshape RNetLogo rrepast]; }; - evreg = derive2 { name="evreg"; version="1.0.2"; sha256="0fbrbd60f8fvby369a2ffmg29xq2rrjfgrb3xp8b9wn13mvk0vzr"; depends=[evclust]; }; + evreg = derive2 { name="evreg"; version="1.0.3"; sha256="0abcs1r48jbiqwnw14yw6hqda4angl7cnl3gnlfj4jx09wpqassw"; depends=[evclust]; }; evt0 = derive2 { name="evt0"; version="1.1-4"; sha256="0hqsv72wswnmgirhwb671snmg65qb1j77pfvzaqw9mi8lmvqalpq"; depends=[evd]; }; evtclass = derive2 { name="evtclass"; version="1.0"; sha256="1ny43sry257cxlg56f0lj1szv9ci3ymskj6l5sn43l5a2pq62g4l"; depends=[evd fitdistrplus RANN]; }; evtree = derive2 { name="evtree"; version="1.0-8"; sha256="1dmzbsyrg8wwzzqcxzqmgm7yai37lh9lkjhizhr2h0k03s5xdv1k"; depends=[partykit]; }; ewoc = derive2 { name="ewoc"; version="0.3.0"; sha256="0r8b5vq0qzp3f0dasxmrngldqlymca90sj019rzs1a0qf28wlgbr"; depends=[coda doParallel doRNG foreach Formula ggplot2 rjags]; }; exCon = derive2 { name="exCon"; version="0.2.5"; sha256="0gqnv01dw4ncf3x3p74pc6f14a1ixq7icl2p18hsmvxdqqg7kgy7"; depends=[jsonlite]; }; exDE = derive2 { name="exDE"; version="1.0.0"; sha256="15z1gdbpnps9idlw8bw3n0wsayjpvv0f5mb8hihi0kvbys8q4sfa"; depends=[deSolve expm MASS]; }; - exact_n = derive2 { name="exact.n"; version="1.1.0"; sha256="0sjiv55455274d2gfhkkdwbpq15wka947ajn9gyypfyc4fmzbqcn"; depends=[]; }; + exact_n = derive2 { name="exact.n"; version="1.1.1"; sha256="0nj6i4djfr9khcj89mds2ks2v0jviaj9kal20havf6ncvjl7ssg2"; depends=[httr]; }; exact2x2 = derive2 { name="exact2x2"; version="1.6.8"; sha256="1wcqgfh859acw5gpcgvvkh40qrjgk07qc4d6w51b51mabcx965wp"; depends=[exactci ssanv]; }; exactLTRE = derive2 { name="exactLTRE"; version="0.1.0"; sha256="0fhzymvsmp1hcq32nwka745jhbf51iyb9hp6ix9rm88kyclcwhrl"; depends=[matrixcalc popdemo]; }; exactRankTests = derive2 { name="exactRankTests"; version="0.8-35"; sha256="1qv9i57chhz8xiv0j8r47rbigyqs72fa7ssz99inyc0s8gzskd3y"; depends=[]; }; @@ -9447,11 +9620,11 @@ in with self; { exams2sakai = derive2 { name="exams2sakai"; version="0.3"; sha256="0lgnk2g4q0vbkvcrhb815lah24rhaknnmsbhhkgbdkl0c5mx1yjg"; depends=[exams glue stringi stringr xml2]; }; exceedProb = derive2 { name="exceedProb"; version="0.0.1"; sha256="02pb8b0rxygbv6501rcr2hb0bhz1r78k5znav161kk25fb9bxs5v"; depends=[BH Rcpp]; }; excelR = derive2 { name="excelR"; version="0.4.0"; sha256="1pb4sy54zjv5vrh7gjjv7qlpab74km6mfsmfyl0yhmr0jx01hrw0"; depends=[htmlwidgets jsonlite]; }; - exceldata = derive2 { name="exceldata"; version="0.1.1.2"; sha256="00vc4bc9nxkfzrzafh3fjvkmwglvbcbzbnj5inf5y1zzan4ppf8q"; depends=[dplyr ggplot2 lubridate readxl scales]; }; + exceldata = derive2 { name="exceldata"; version="0.1.1.3"; sha256="10krwc7fq0idmlpm32n4ikjixcmp775lgsnbndpg7pgwkmkqp81k"; depends=[dplyr ggplot2 lubridate readxl scales]; }; excessmort = derive2 { name="excessmort"; version="0.6.1"; sha256="0qkj30csq96qg7r8vdl79n31dhz69vh49qz4gpb3r2fr32pn497k"; depends=[dplyr ggplot2 lubridate rlang scales tidyr]; }; excluder = derive2 { name="excluder"; version="0.5.0"; sha256="1in27qb5zv5cqscdca8nsdnz7jxglvnfi7is8ilc1791w5ld80m7"; depends=[cli curl dplyr ipaddress janitor lubridate magrittr maps rlang stringr tidyr tidyselect]; }; - excursions = derive2 { name="excursions"; version="2.5.7"; sha256="02pd02c962wzj2lks33yyq4k9knxg3p41sa7chyqj0j6nrr306xp"; depends=[fmesher Matrix sp withr]; }; - exdex = derive2 { name="exdex"; version="1.2.2"; sha256="1b5w9r2nhvl0i6ja5psx64gj7495mnl1gh4z2dz6309xznlk69nn"; depends=[chandwich Rcpp RcppArmadillo RcppRoll]; }; + excursions = derive2 { name="excursions"; version="2.5.8"; sha256="0mirg44xhrb7h30blnb4hdfl5h96k5v28ll1awajrjmnrgwssx6a"; depends=[fmesher Matrix sp withr]; }; + exdex = derive2 { name="exdex"; version="1.2.3"; sha256="1vmbk52gxay0604jqmiqgm5zffnx1x5f5x3k0dajyxn3qlvqqrp6"; depends=[chandwich Rcpp RcppArmadillo RcppRoll]; }; exdqlm = derive2 { name="exdqlm"; version="0.1.3"; sha256="1mflapsbi67jabimqbysr0rcgi8bvn05sgmf5ykr9hmvhs16pf0x"; depends=[brms coda crch dlm FNN GeneralizedHyperbolic HyperbolicDist LaplacesDemon magic tictoc truncnorm]; }; exif = derive2 { name="exif"; version="0.1.0"; sha256="12phqn5x1x0xs2xczl3064q983dalm261vqpyafhdcndm1y3gwbc"; depends=[Rcpp]; }; exifr = derive2 { name="exifr"; version="0.3.2"; sha256="0iqm513h7951q3hg8maf2hbprqmsm93cb3mbg3g91qawpx77494c"; depends=[curl jsonlite plyr rappdirs tibble]; }; @@ -9467,11 +9640,12 @@ in with self; { expertsurv = derive2 { name="expertsurv"; version="1.3.0"; sha256="0m8p902528z3ih0mzgds0jg8iv885279mmdpv0zhf2wc3hd99ri7"; depends=[abind BH dplyr flexsurv ggplot2 loo magrittr Rcpp RcppEigen RcppParallel Rdpack rlang rms rstan rstantools scales SHELF StanHeaders stringr survival tibble tidyselect]; }; expint = derive2 { name="expint"; version="0.1-8"; sha256="1cn6c84pqf8bgk109qm4znn186h6s6cpll3d11cw144h0vh4yr8j"; depends=[]; }; expirest = derive2 { name="expirest"; version="0.1.5"; sha256="08gwy1fikj7kg7h6fc7w15621jc0prdqdhzx14ad6dvdi5rd33gv"; depends=[ggplot2 rlang]; }; + explainer = derive2 { name="explainer"; version="1.0.0"; sha256="10ycixmhjyakb3di5p4v5c6vji6jypkf6za30rqh1c7mzzxbvlah"; depends=[cvms data_table dplyr egg ggplot2 ggpmisc ggpubr magrittr plotly tibble tidyr writexl]; }; explor = derive2 { name="explor"; version="0.3.10"; sha256="102rjnllk5xxsik42dd8m1rryz5y2h2dwmidy2jy3zlylgc4dhdr"; depends=[dplyr DT formatR ggplot2 highr RColorBrewer scatterD3 shiny tidyr]; }; exploratory = derive2 { name="exploratory"; version="0.3.31"; sha256="0m8visp57v2bgfbi3n6ywz2z7djd6bnd19hcz0jl2fjw9w5sw3hy"; depends=[data_table DT ggplot2 ggridges lemon lm_beta mediation remotes shiny shinydashboard weights]; }; explore = derive2 { name="explore"; version="1.1.0"; sha256="02ki798jzcnb7vg99m6fzw2wwmvy2gmsk62cdhh6gr0n2gxw4khy"; depends=[dplyr DT forcats ggplot2 gridExtra magrittr palmerpenguins rlang rmarkdown rpart rpart_plot shiny stringr tibble]; }; exploreR = derive2 { name="exploreR"; version="0.1"; sha256="154j5wiiy9vqdvh1qvdkz2fdp2phcygbbjl7nj5nkn07xwxbsc77"; depends=[ggplot2]; }; - expm = derive2 { name="expm"; version="0.999-7"; sha256="1wd03dcqxyi7kyznfq7107ix1bsp7rwzqqv6w7p37pdq2jwlkwi8"; depends=[Matrix]; }; + expm = derive2 { name="expm"; version="0.999-8"; sha256="0lh5f3pln7v9yi88rjvkq3ii32lngp0l4k8xn9hc74kks6gjmqkr"; depends=[Matrix]; }; export = derive2 { name="export"; version="0.3.0"; sha256="1b238d6aa1m2pcg7vdjbrvjj748j3fim5zvhng7lgkag2rzjqa56"; depends=[broom devEMF flextable officer openxlsx rgl rvg stargazer xml2 xtable]; }; expowo = derive2 { name="expowo"; version="1.0"; sha256="0qxwm8fxiwg8fad870fjrf5cax9bvzi2b36c6g7ffqq2cnjdk4xh"; depends=[data_table dplyr ggplot2 magrittr RColorBrewer rnaturalearth sf sp]; }; expperm = derive2 { name="expperm"; version="1.6"; sha256="0cybna0q3qn3slyc4lv5rby4pr0xkwq0h6n7hl1zhsaqv4c2zc5b"; depends=[Rcpp]; }; @@ -9479,17 +9653,18 @@ in with self; { expss = derive2 { name="expss"; version="0.11.6"; sha256="1qzgy9psxq7w61rqp16qhs02q264izk9bv1hwpa2n9k02milvldw"; depends=[data_table htmlTable maditr matrixStats]; }; expstudy = derive2 { name="expstudy"; version="1.0.3"; sha256="0xvrwhgfwddgn943shpmh8ifsa7hyandrpgp1yg9n9iqwmmddg77"; depends=[assertthat checkmate data_table dplyr dtplyr glue lifecycle magrittr pillar purrr rlang stringr tibble tidyr tidyselect]; }; exreport = derive2 { name="exreport"; version="0.4.1"; sha256="0vj60rchhrc5q6x1kv7b95fcmh2a5qynli2w54rrrw1nx54xm8c2"; depends=[ggplot2 reshape2]; }; + extBatchMarking = derive2 { name="extBatchMarking"; version="1.0"; sha256="0nskc1l4s0yf6q1q4zg5a7pa2kygs85jx65avlmxlqx9lc7w7bca"; depends=[doParallel foreach optimbase Rcpp RcppArmadillo]; }; extRC = derive2 { name="extRC"; version="1.2"; sha256="0mkvic9nr0asd0g04nlfiy81d7am9a3i65ibxyvbdwsxnf92p8ya"; depends=[MASS]; }; extRatum = derive2 { name="extRatum"; version="1.0.4"; sha256="1w4xfr7ps565xczmn6pr7g4551rj28df1j0y9vckvxdbb4dk1p11"; depends=[dplyr sf tidyr]; }; extRemes = derive2 { name="extRemes"; version="2.1-3"; sha256="0h1w177vz3z58vbqrfbiqapf9z2qsd7gcbv8fnbyn0i5akfz1k71"; depends=[distillery Lmoments]; }; - extendedFamily = derive2 { name="extendedFamily"; version="0.2.3"; sha256="1scv5y60xr7sc77yxlsqqgxccc28bmsac23850x75bw3q2hx1cfy"; depends=[assertthat]; }; + extendedFamily = derive2 { name="extendedFamily"; version="0.2.4"; sha256="07nayhnj1jm2720hgd5hkb5z6x2dslcdqw8cvfv4q7mlfm6b7r1i"; depends=[assertthat]; }; exteriorMatch = derive2 { name="exteriorMatch"; version="1.0.0"; sha256="0cdfj1n502iws1g03rk7x0c18zyazqf3vci9kjm6lrv4j2qwrvip"; depends=[]; }; extlasso = derive2 { name="extlasso"; version="0.3"; sha256="01vmnajxc52gk7kj20x8b80lh8qi932g8213mkvvixzsz3ipf689"; depends=[]; }; - extraDistr = derive2 { name="extraDistr"; version="1.9.1"; sha256="1gypnbvdzczl0mvznvy8r7hzsvc5gvdvi2mmzj21cqdw9n63944r"; depends=[Rcpp]; }; + extraDistr = derive2 { name="extraDistr"; version="1.10.0"; sha256="1ad3xp4axbbid9i9vd4q8iccs3g3917yic2mas37mfwm5in4l9pl"; depends=[Rcpp]; }; extrafont = derive2 { name="extrafont"; version="0.19"; sha256="13dbrlf54nbyfz3z2snz7x4m6rfnnhk2l8kkwpgcagzi5lar13sf"; depends=[extrafontdb Rttf2pt1]; }; extrafontdb = derive2 { name="extrafontdb"; version="1.0"; sha256="115n42hfvv5h4nn4cfkfmkmn968py4lpy8zd0d6w5yylwpzbm8gs"; depends=[]; }; extrafrail = derive2 { name="extrafrail"; version="1.8"; sha256="19rj2gykrxcbp1cv07xpfsz29mxsnfc38vrzf3ckqnbyqdp18v39"; depends=[expint msm pracma survival]; }; - extraoperators = derive2 { name="extraoperators"; version="0.1.1"; sha256="1clyp97ssmdq9ggbv3w5yskx7khnlm4ji7ym3k3b4bx1pazcw4q4"; depends=[]; }; + extraoperators = derive2 { name="extraoperators"; version="0.3.0"; sha256="1kv72s5fcaiyp4sa2r4plm6psjhh07cdkl0zd7mdl25r8ixs1k3h"; depends=[]; }; extras = derive2 { name="extras"; version="0.6.1"; sha256="1m807qay8zj4wbghajvmph87rwsjfhra5090adf8i42bif29phwb"; depends=[chk lifecycle]; }; extraterrestrial = derive2 { name="extraterrestrial"; version="0.1.0"; sha256="0clss1zwgw1497n2xif82kplr1w1ajs4xs02041ads3l8craj7y1"; depends=[]; }; extremeIndex = derive2 { name="extremeIndex"; version="0.0.3"; sha256="19zkqabk7n5v4nnwlkxbrym4rf1ljbpblggiqd9s9f6ylir417pv"; depends=[boot evd evir gmm]; }; @@ -9499,7 +9674,7 @@ in with self; { extremis = derive2 { name="extremis"; version="1.2.1"; sha256="11y3cb5z6vsrpdffdr44afz3is0ikxvpb81a8pwc7p8q63rxq4a2"; depends=[emplik evd MASS]; }; extremogram = derive2 { name="extremogram"; version="1.0.2"; sha256="13k869v6j4ik9p8w0gf1absvb45xbd3nnwghsz0ix7y0vyvry358"; depends=[boot MASS]; }; exuber = derive2 { name="exuber"; version="1.0.2"; sha256="1r3hb4nlaph1a2s0dmd1n22ax9xgmdrg75w2xlbf8v1j3ifamvl9"; depends=[cli doRNG doSNOW dplyr foreach generics ggplot2 glue lubridate progress purrr Rcpp RcppArmadillo rlang tibble tidyr]; }; - exvatools = derive2 { name="exvatools"; version="0.4.0"; sha256="1j0r048cs4icj3m19w0b2x2hd1r32qyql0cwbbkf8al0ps4pddw1"; depends=[cli data_table openxlsx reshape2]; }; + exvatools = derive2 { name="exvatools"; version="0.5.0"; sha256="0cv1ykpd9m9afd6gacp4cm8i5fc2djpgf4hrsh97wqv5nn272ncn"; depends=[cli data_table openxlsx reshape2]; }; eye = derive2 { name="eye"; version="1.2.1"; sha256="0la9hlpryqczi6v6pyjx2hdhhdgm3aijs45v1nj76a867zmf77k9"; depends=[cli dplyr english lubridate magrittr pillar purrr rlang stringr tibble tidyr tidyselect]; }; eyeRead = derive2 { name="eyeRead"; version="0.0.4"; sha256="0f6knzr4fdipbrvcsk0q9yjvkjjyc4wc252lq2s41gdvj3hv575d"; depends=[data_table tibble tidyr]; }; eyeTrackR = derive2 { name="eyeTrackR"; version="1.0.1"; sha256="14m7l8v0ry1ami1jl0xjp743m1ycklgfwi06vk5amppdp5w3w3qr"; depends=[data_table plyr stringr]; }; @@ -9515,22 +9690,22 @@ in with self; { ezec = derive2 { name="ezec"; version="1.0.1"; sha256="0lpx55a8fhy6fqdv3zvzx9mh75q34r71v5kp96hkm9jzl4yvrpd2"; depends=[dplyr drc]; }; ezknitr = derive2 { name="ezknitr"; version="0.6.3"; sha256="07cznigqndqly24lh3jdk3zq1r4xflivgdfhrh7mmhr83lqy1cha"; depends=[knitr markdown R_utils]; }; ezmmek = derive2 { name="ezmmek"; version="0.2.4"; sha256="0x62nzs1kayv95a6ldav732v79gahrri2khy1w678rxbzfx5wkqy"; depends=[assertable dplyr ggplot2 magrittr nls2 purrr rlang tidyr]; }; - ezplot = derive2 { name="ezplot"; version="0.7.10"; sha256="1qq47pbwzgyfldiwaz5avxfiplzqjia7vc99m5g5h9y96qm4vxc7"; depends=[dplyr forcats ggplot2 lubridate rlang]; }; + ezplot = derive2 { name="ezplot"; version="0.7.11"; sha256="1ga122wk6iggysbpb8x0dvzlfgdaqg1dsdaa6ksbq18441lirrqs"; depends=[dplyr forcats ggplot2 lubridate rlang]; }; ezr = derive2 { name="ezr"; version="0.1.5"; sha256="0r4zq0864xpnmczg1zpaasi348j1fllrn0rqfa5fmjh245chcpd4"; depends=[data_table DT ggplot2 ggridges moments shiny shinydashboard weights]; }; - f1dataR = derive2 { name="f1dataR"; version="1.4.0"; sha256="1azh0ij9a8szgkbsz00nyg5gijk1q1bpd9lphyv3kkg65sap7r8i"; depends=[cachem cli dplyr glue httr2 janitor jsonlite lifecycle magrittr memoise rappdirs reticulate rlang tibble tidyr withr]; }; + f1dataR = derive2 { name="f1dataR"; version="1.4.1"; sha256="0ky84g4s454inl0px9x6qr3ki0z8cwhalrhikvv77q9kgv0fnzxz"; depends=[cachem cli dplyr glue httr2 janitor jsonlite lifecycle magrittr memoise rappdirs reticulate rlang tibble tidyr withr]; }; fANCOVA = derive2 { name="fANCOVA"; version="0.6-1"; sha256="04mw0blgpwdk6wdg8llrig43psgc0vb42cbimvzbnym8v503dsn3"; depends=[]; }; fAssets = derive2 { name="fAssets"; version="4023.85"; sha256="1yrs3mfq8ym5pdmf6236xwnc8176z7j36f2bzrrwdfp7kz2gq0id"; depends=[ecodist energy fBasics fMultivar MASS mvnormtest robustbase sn timeDate timeSeries]; }; - fBasics = derive2 { name="fBasics"; version="4031.95"; sha256="1d1pbyidng68fcc6vrm98ybklz6yzrinqc2dhg8q6f1pg3kkx6bj"; depends=[gss MASS spatial stabledist timeDate timeSeries]; }; + fBasics = derive2 { name="fBasics"; version="4032.96"; sha256="14461d6ac8hcn1x3srh45a4s5imafqb0xy8bn5l6d0qwhw4njmg1"; depends=[gss MASS spatial stabledist timeDate timeSeries]; }; fBonds = derive2 { name="fBonds"; version="3042.78"; sha256="1yb5vyqj66m82xks5qi5cnsppylpprbk656z4lxzg30873hi8pcf"; depends=[fBasics timeDate timeSeries]; }; fCopulae = derive2 { name="fCopulae"; version="4022.85"; sha256="18gjlh254wm2yjyxrhrlbhjp6qvan3yway2m3fb0dqskd6dwmgq2"; depends=[fBasics fMultivar timeDate timeSeries]; }; fDMA = derive2 { name="fDMA"; version="2.2.7"; sha256="02710ynd3y13pkbypmqh7lid9g3xn282kxf59yr5p3d76384z0gg"; depends=[doParallel foreach forecast gplots iterators itertools png psych Rcpp RcppArmadillo tseries xts zoo]; }; - fExtremes = derive2 { name="fExtremes"; version="4021.83"; sha256="0i0sabk5clk50r9qk69d0rqzkx95x3x9fnwqr8kx40d7v55s1blb"; depends=[fBasics fGarch timeDate timeSeries]; }; + fExtremes = derive2 { name="fExtremes"; version="4032.84"; sha256="0cg2rbyx9704gii2mr6bwc64mjbzxh5n1i6x06yrg3gpixzl3gy0"; depends=[fBasics fGarch timeDate timeSeries]; }; fGarch = derive2 { name="fGarch"; version="4031.90"; sha256="06ilj6nkmc7d4dhbh3zd9f5nyiq4x9win9qkyvcgm5yc8qslnw5z"; depends=[cvar fastICA fBasics Matrix timeDate timeSeries]; }; - fHMM = derive2 { name="fHMM"; version="1.1.1"; sha256="141fvg32fqfn4c6d0sq90pcrynjpfpsdyvd5a1nj870dzqq3369v"; depends=[cli foreach MASS progress Rcpp RcppArmadillo]; }; + fHMM = derive2 { name="fHMM"; version="1.2.0"; sha256="1i7vmsnvpi05hn9an8babhl2b06wyp24c1l1fr2zjymqwalhwqn3"; depends=[checkmate cli foreach MASS oeli padr progress Rcpp RcppArmadillo]; }; fICA = derive2 { name="fICA"; version="1.1-2"; sha256="0dqw3qybnpdnvhfh5inkc4011bzhsxvhpv8zzmkm3q5m6hkc6rlg"; depends=[JADE Rcpp RcppArmadillo]; }; - fImport = derive2 { name="fImport"; version="4021.86"; sha256="011hrbwxf6v4abxsk4zw26awnh1nxmn3vgsx58awbx2jg6gcc9cj"; depends=[timeDate timeSeries]; }; - fMRIscrub = derive2 { name="fMRIscrub"; version="0.14.4"; sha256="039aiwigsp1gxyrqnpqxf9qhmlq4vzh40ca55hc1dpjas541w4wi"; depends=[cellWise e1071 expm fMRItools gamlss MASS pesel robustbase]; }; - fMRItools = derive2 { name="fMRItools"; version="0.3.3"; sha256="0hbl01hzp503qr2bh1hrgnc3akf0a9lw8ny56vlagb055jsprpdx"; depends=[matrixStats]; }; + fImport = derive2 { name="fImport"; version="4032.87"; sha256="1vcfzivsv88k9827dlm93radm0m33cwlhx8vqnz81ib5b65amqsx"; depends=[timeDate timeSeries]; }; + fMRIscrub = derive2 { name="fMRIscrub"; version="0.14.5"; sha256="1k0ixg82sgngmpbpl2b57lhamm19bfgcxszrwpf5qkvrh83ab3gs"; depends=[cellWise e1071 expm fMRItools gamlss MASS pesel robustbase]; }; + fMRItools = derive2 { name="fMRItools"; version="0.4.2"; sha256="0rd77bsi51pgvmp1vyrcyg77yqj9vm5fnb98i9iyngyrx4hzv5m9"; depends=[matrixStats]; }; fMultivar = derive2 { name="fMultivar"; version="4031.84"; sha256="1f54cvl7m064cxkjr0rz84xprrbr76cw12mjmi8wld4ac5a16igc"; depends=[cubature fBasics mvtnorm sn]; }; fNonlinear = derive2 { name="fNonlinear"; version="4021.81"; sha256="1dpzg880wnja357qy3r4v5qbqhx7pkknd0rph75xvvn38p4rc0ca"; depends=[fBasics timeDate timeSeries]; }; fPASS = derive2 { name="fPASS"; version="1.0.0"; sha256="0xrvkcgbzd0xkrxc5p18bhfb5hlf5kxrqyjpy4482bjhr3rr714f"; depends=[dplyr expm face gamm4 gss lifecycle magrittr MASS Matrix mgcv nlme purrr rlang stringr testthat]; }; @@ -9542,7 +9717,7 @@ in with self; { fUnitRoots = derive2 { name="fUnitRoots"; version="4021.80"; sha256="1ycsa5mw43mdrp4xb39j8n0c393qmmnyc7ncbkcjgyms2xk8fhjh"; depends=[fBasics timeSeries urca]; }; fabCI = derive2 { name="fabCI"; version="0.2"; sha256="1vga322xpqzsh40n74v8vqiq8zbzrabvg58mp50bcx2ml0dikgnm"; depends=[MASS]; }; fabMix = derive2 { name="fabMix"; version="5.0"; sha256="1gii3mdii9nw423xxn9mhv1pjbw967wdarn828w04zm9dkdcwm48"; depends=[coda corrplot doParallel foreach ggplot2 label_switching MASS mclust mvtnorm RColorBrewer Rcpp RcppArmadillo]; }; - fabR = derive2 { name="fabR"; version="2.0.0"; sha256="0m0hj5mpyhy5kqnx9vkr8gf1p5l1aji286yasg8vvczpfyw3hlvp"; depends=[bookdown digest dplyr fs haven janitor lifecycle lubridate purrr readr readxl rlang stringr tidyr usethis writexl xfun]; }; + fabR = derive2 { name="fabR"; version="2.0.1"; sha256="16qmd77g3sf55q9zd01mknic4616yjjl9l6k0nfsp00nkpi8gbb0"; depends=[bookdown digest dplyr fs haven janitor lifecycle lubridate purrr readr readxl rlang stringr tidyr usethis writexl xfun]; }; fabisearch = derive2 { name="fabisearch"; version="0.0.4.5"; sha256="0yxmw7d7j3llcfs4d0dn2vv4ajalwz0qxrg7bqgql8dvwrb9jgkh"; depends=[doParallel doRNG foreach NMF reshape2 rgl]; }; fable = derive2 { name="fable"; version="0.3.3"; sha256="0rld2lnhi2wn5skcmx9mwrb2rj1yhphy6xq0m3im252y1zc4bm7v"; depends=[distributional dplyr fabletools Rcpp rlang tibble tidyr tsibble]; }; fable_ata = derive2 { name="fable.ata"; version="0.0.6"; sha256="1i596w593xzqlfq4mxw6cafqs9a551mj58ai4l0q7xav44hm9zlq"; depends=[ATAforecasting distributional dplyr fabletools lubridate rlang tibble tsbox tsibble]; }; @@ -9556,14 +9731,16 @@ in with self; { facebookorganicR = derive2 { name="facebookorganicR"; version="0.1.0"; sha256="0j4zx4gf3k81pv5kfq3ki44rfn1411n7840m1zih3hfvpdd761a0"; depends=[jsonlite]; }; facerec = derive2 { name="facerec"; version="0.1.0"; sha256="1dipcnxjz6yd34w0jrrvj5p0pwdgz1l5m9zvri7mflnz7g34gmaj"; depends=[dplyr httr jsonlite knitr magrittr rlang snakecase stringr]; }; facmodCS = derive2 { name="facmodCS"; version="1.0"; sha256="1xav9lcjb5wd5h9cqyqn2ra3nxd60kq54g1vgmgfbvpmdj7hvrks"; depends=[data_table lattice PerformanceAnalytics RobStatTM robustbase sn tseries xts zoo]; }; + facmodTS = derive2 { name="facmodTS"; version="1.0"; sha256="1c58w3my7zxcx04h8b284999r3jkd6l0sgwdzkjrkzm42lzw0dhm"; depends=[boot corpcor data_table lars lattice leaps PerformanceAnalytics PortfolioAnalytics quadprog R_cache RobStatTM robustbase sandwich sn xts zoo]; }; factReg = derive2 { name="factReg"; version="1.0.0"; sha256="06m3ir145342lyqdp25fbcg8s4cdbg2xh4dl1291hfx2pd6zxgsz"; depends=[glmnet mathjaxr Matrix rrBLUP]; }; factiv = derive2 { name="factiv"; version="0.1.0"; sha256="1m43kg8mrlnkzs667s4a8c2jkfdgv2pjbwf45vf2w4nlp84camxx"; depends=[Formula generics]; }; factoextra = derive2 { name="factoextra"; version="1.0.7"; sha256="1allvdjhd3pq8xz30b1cymwcik5iaahghrjrlnn54cwkfhfg0kv2"; depends=[abind cluster dendextend FactoMineR ggplot2 ggpubr ggrepel reshape2 tidyr]; }; factoptd = derive2 { name="factoptd"; version="1.0.3"; sha256="1ir50im3kr1xhqk4qwrm2h5fq9gqgrwshbamvjlf8n1wnn03mcb6"; depends=[MASS partitions]; }; factor_switching = derive2 { name="factor.switching"; version="1.3"; sha256="1hd2m9yyk9vbpknm7gyhgr6ywv84a1q5w46cspxp92nal784b5x3"; depends=[coda HDInterval lpSolve MCMCpack]; }; + factor256 = derive2 { name="factor256"; version="0.1.0"; sha256="17jmyhi7qm3prgaxa8hn84769czwxhhh3n9sib3cxq9diilri3y6"; depends=[]; }; factorial2x2 = derive2 { name="factorial2x2"; version="0.2.0"; sha256="045887hwknwm92wlrp0jlvxj5aal50vpnc7ddbh7c8smawmrdwfd"; depends=[mvtnorm survival]; }; factormodel = derive2 { name="factormodel"; version="1.0"; sha256="0yvp8mk42hi1vhrw29djabndc8pbbpjbr6bwss95wsmk7zvvf6i2"; depends=[dplyr gtools nnet pracma]; }; - factorstochvol = derive2 { name="factorstochvol"; version="1.0.6"; sha256="1f22qxskk4hgsx9ic7v89rvjv1pdsijpakw0j4x2wya10dfrj9rp"; depends=[corrplot GIGrvg Rcpp RcppArmadillo stochvol]; }; + factorstochvol = derive2 { name="factorstochvol"; version="1.1.0"; sha256="15ki0kaqam97zlm0mgl8pf2swrcqw46d5816aavwmn6jw2banksm"; depends=[corrplot GIGrvg Rcpp RcppArmadillo stochvol]; }; factory = derive2 { name="factory"; version="0.1.0"; sha256="1715bx2rn8kk5qd196jnrv5f95l54n4y0aqqdzfkgrmqihcy8ahx"; depends=[purrr rlang]; }; factset_analyticsapi_engines = derive2 { name="factset.analyticsapi.engines"; version="3.0.1"; sha256="0v96z837dii1q7mbpd48zwpl2qjzqnhignb80g0xkc4iygsnrrms"; depends=[caTools httr jsonlite R6 rlang]; }; factset_protobuf_stach_v2 = derive2 { name="factset.protobuf.stach.v2"; version="1.0.6"; sha256="1w6fsamkz8g9mkjd2my5wdv52fav8ikp3jlfil8amfbclmhdbx22"; depends=[R6 RProtoBuf]; }; @@ -9591,13 +9768,14 @@ in with self; { fangs = derive2 { name="fangs"; version="0.2.13"; sha256="11jcj9mk20lmqdwl5cczki5kzx4fdrci8xjg6g401ca1m00hhb1v"; depends=[]; }; fanovaGraph = derive2 { name="fanovaGraph"; version="1.5"; sha256="1hffda52yk24slbgsfdgkpg3vsryfnhlw09r39cbyz483i7xd8d0"; depends=[DiceKriging igraph sensitivity]; }; fanplot = derive2 { name="fanplot"; version="4.0.0"; sha256="08zd2af26ah1rdkzxi1sv4c4l06jpxd6m38q3xy657k2jm90rkkc"; depends=[]; }; - fansi = derive2 { name="fansi"; version="1.0.5"; sha256="1xi35schbz42kjwjzhjqj12nd053962mgnk6qd9k5m5zgwsww5n6"; depends=[]; }; + fansi = derive2 { name="fansi"; version="1.0.6"; sha256="0qqq8gz6sfr5yib4qmvk458qa0ypaz0n7f2ygjnpy2p5vy8cd7ga"; depends=[]; }; + fanyi = derive2 { name="fanyi"; version="0.0.6"; sha256="047ag47lnw5p54zp5zwpdmnmngvssv8n55h2h6ypvfdcflybfnid"; depends=[digest ggfun httr2 jsonlite openssl rentrez rlang SSEparser uuid yulab_utils]; }; faoutlier = derive2 { name="faoutlier"; version="0.7.6"; sha256="0dd8k5s0yv047p10jisqz13nflby4y0dg97r0nbjygzcq1ryx2bs"; depends=[lattice lavaan MASS mirt mvtnorm pbapply sem]; }; faq = derive2 { name="faq"; version="0.1.1"; sha256="0knajqm9ydsjhn6xymfrcyf2b1kgfbiai8ai2zlm7p4mgfry504h"; depends=[htmlwidgets jsonlite]; }; far = derive2 { name="far"; version="0.6-6"; sha256="0p0731vg1y57z8dmbrsa5gbnpf754q8yi5mm5h9480x1f8nk38bi"; depends=[nlme]; }; faraway = derive2 { name="faraway"; version="1.0.8"; sha256="0w4mp3dpckr74js7ihkgybiim8crq3izkbxwrs0a52lhah03haz4"; depends=[lme4 nlme]; }; farff = derive2 { name="farff"; version="1.1.1"; sha256="1hniqhc4mdnaq8bmpj2fmb6iwgys0al1kvcdiq08pmgj6hhzzjr3"; depends=[BBmisc checkmate readr stringi]; }; - farr = derive2 { name="farr"; version="0.2.30"; sha256="0bzq9kbqp77m1jdb6sqd5axk783la7zs3y0i68fqydh50s0r3z2g"; depends=[DBI dbplyr dplyr lubridate magrittr readr rlang rpart stringr tibble tidyr]; }; + farr = derive2 { name="farr"; version="0.2.39"; sha256="0zs74q5a7mikkvfhz3j1m1z5pdhc3pcjlbzrn4saf05rd2w59x07"; depends=[DBI dbplyr dplyr lubridate magrittr readr rlang rpart stringr tibble tidyr]; }; farrell = derive2 { name="farrell"; version="0.2.1"; sha256="0i546w5p40j9wqiq7qvbxw0426msavbdpnh258jcg6bagc6bywh8"; depends=[Benchmarking data_table dplyr DT magrittr miniUI readr rlang shiny shinycssloaders shinyWidgets tibble]; }; farver = derive2 { name="farver"; version="2.1.1"; sha256="1klnr73fhm7n46q85in1v9gi99y6rcdzzg4h4wvnbx23lxndmkqd"; depends=[]; }; fasano_franceschini_test = derive2 { name="fasano.franceschini.test"; version="2.2.1"; sha256="1d4ai05c81sslkvxsis4pvzigx306nly120k67jlj8vn7p8wdlhy"; depends=[Rcpp RcppParallel]; }; @@ -9605,43 +9783,45 @@ in with self; { fasstr = derive2 { name="fasstr"; version="0.5.1"; sha256="1kzk759xvba66fq4zw0p0kwfgbk42bw5z2fi7f8ziy4vzkpwcy93"; depends=[dplyr e1071 fitdistrplus ggplot2 lubridate openxlsx PearsonDS plyr purrr RcppRoll scales tidyhydat tidyr zyp]; }; fastAFT = derive2 { name="fastAFT"; version="1.4"; sha256="0vyjp2dyy72d7dfjjky6aygvl6kqm30mk11n5rcj51rydbxaawnc"; depends=[]; }; fastDummies = derive2 { name="fastDummies"; version="1.7.3"; sha256="0sm02pxbabckxpi3mn36h5bz2wx5pyx7a1dhc2abc4c7fwpihsng"; depends=[data_table stringr tibble]; }; + fastFMM = derive2 { name="fastFMM"; version="0.1.0"; sha256="0yfh09v8syifa5xnyp5z6ba13y8b9v24r7f298a4kx8gzykbxpdi"; depends=[cAIC4 dplyr ggplot2 gridExtra lme4 lmeresampler lsei magrittr MASS Matrix mgcv mvtnorm progress refund Rfast stringr]; }; fastGHQuad = derive2 { name="fastGHQuad"; version="1.0.1"; sha256="1zj7nsbnx4g253m3dpz9vi3zk3jxwrixwjw1ks6n4shpb4dlkp2w"; depends=[Rcpp]; }; fastGLCM = derive2 { name="fastGLCM"; version="1.0.2"; sha256="1f7mafhsygbz1vrjvpva2zql0d6dphzr31skh9agancghh8hnm3q"; depends=[OpenImageR R6 Rcpp RcppArmadillo rlang]; }; fastGraph = derive2 { name="fastGraph"; version="2.1"; sha256="0lz199607hqpwxzhff4jzhmjq6cbakd335iyclmlscllgfzgnhql"; depends=[]; }; - fastICA = derive2 { name="fastICA"; version="1.2-3"; sha256="0l49cmxm1n4dzrv8q3q3mq4drcjgby4f1dmpwfdb8jxn9ij85vz9"; depends=[]; }; + fastICA = derive2 { name="fastICA"; version="1.2-4"; sha256="0bszvwsfal83phwsk81vwcbs8q56qp5fs9a99yzpa6hd87m8hsgd"; depends=[]; }; fastJT = derive2 { name="fastJT"; version="1.0.6"; sha256="1vw9x00gslqgjfz55a60kizz8y02jifgf3fw7dv9lxm207vd2wxq"; depends=[Rcpp]; }; fastLaplace = derive2 { name="fastLaplace"; version="0.0.2"; sha256="172irl97sxkc5m1rk2kxxl8hkb1yf0029k9szkw9qyz0ki8d657w"; depends=[bbmle fields RSpectra]; }; - fastLink = derive2 { name="fastLink"; version="0.6.0"; sha256="0xysif0v7l7iwnwpf5ydk7ns9azsgja5sm672wxybfqwrh6nx9xk"; depends=[adagio data_table doParallel dplyr FactoClass foreach gtools Matrix plotrix Rcpp RcppArmadillo RcppEigen stringdist stringi stringr]; }; + fastLink = derive2 { name="fastLink"; version="0.6.1"; sha256="1fjf47c0bpfmrg428p3qgd4m91dpf8500sp758mrp241v5n0lfx9"; depends=[adagio data_table doParallel dplyr foreach gtools Matrix plotrix Rcpp RcppArmadillo RcppEigen stringdist stringi stringr]; }; fastLogisticRegressionWrap = derive2 { name="fastLogisticRegressionWrap"; version="1.2.0"; sha256="0vyb43632xhm9g52025ic8b8fmznpidsdwnaraj9vzysrim2v1r6"; depends=[checkmate MASS Rcpp RcppEigen RcppNumerical]; }; fastM = derive2 { name="fastM"; version="0.0-4"; sha256="1n9a431w0hl4kr3pa32kcyd1d73acz4vb9vhfkckk3099mg46d9m"; depends=[Rcpp RcppArmadillo]; }; + fastMatMR = derive2 { name="fastMatMR"; version="1.2.5"; sha256="0lh2nrfj8pbhl56pg0icw0ln2bg411sjdkjb76lar3rsb67ifxvb"; depends=[cpp11]; }; fastNaiveBayes = derive2 { name="fastNaiveBayes"; version="2.2.1"; sha256="04hv4jdhan1vbsixzbifa7hpmc531gv7c2dd1fx5700c2wlkja1n"; depends=[Matrix]; }; fastOnlineCpt = derive2 { name="fastOnlineCpt"; version="1.0"; sha256="0grkgj8kwqblikgw5pg4vdp41qd9s4cd7dzih3ima31fdw8ssi3c"; depends=[Rdpack]; }; - fastR2 = derive2 { name="fastR2"; version="1.2.2"; sha256="0s0nff8j0lxby3v8wr388dgry3kais58p8dbygfy15zppcnixkh6"; depends=[dplyr ggplot2 lattice maxLik miscTools mosaic numDeriv]; }; + fastR2 = derive2 { name="fastR2"; version="1.2.4"; sha256="1bmqsjqa13i4dm2pblrwsj1wa80mpi71mpmznc1i199kd4afscgz"; depends=[dplyr ggplot2 lattice maxLik miscTools mosaic numDeriv]; }; fastRG = derive2 { name="fastRG"; version="0.3.2"; sha256="1ig6z8azl2vsl79nfs3s4f9v1f6f27vzc0kxb9zmvkpx3hfnlm7k"; depends=[dplyr ellipsis ggplot2 glue igraph Matrix RSpectra tibble tidygraph tidyr]; }; fastRhockey = derive2 { name="fastRhockey"; version="0.4.0"; sha256="1xw4ylrsf9wylym79svazrmw2c9fmqk8n0sz1vypsm29dsic879k"; depends=[cli data_table dplyr glue httr janitor jsonlite lubridate magrittr progressr purrr Rcpp RcppParallel rlang rvest stringr tibble tidyr]; }; fastSOM = derive2 { name="fastSOM"; version="1.0.1"; sha256="1fzy7lfx1fn9993h0qh6vbwq0w4gfgbdrprmzb1z3aqq6nqvmngm"; depends=[]; }; fastText = derive2 { name="fastText"; version="1.0.3"; sha256="1kb0ig17rq4iyqqlppf39ixgfqgm22wmv27xji2rknsq9df3c4kr"; depends=[data_table ggplot2 glue Rcpp]; }; - fastTextR = derive2 { name="fastTextR"; version="2.0.1"; sha256="1f1b9dsir0dxw2psp721vgpjj6pwrx1xxsd0cqxnfq8mpwswf125"; depends=[Rcpp slam]; }; + fastTextR = derive2 { name="fastTextR"; version="2.1.0"; sha256="1hj3cplh0v062q6jm0j3r4spi5aac5bfas7sda9is9glpv6h3sgw"; depends=[Rcpp slam]; }; fastTopics = derive2 { name="fastTopics"; version="0.6-142"; sha256="0fchwd54dn6abw5z8wk4wcysn9amjxmkayz8wzl3nwfr0ldjkc67"; depends=[ashr cowplot dplyr ggplot2 ggrepel htmlwidgets irlba Matrix MCMCpack pbapply plotly progress quadprog Rcpp RcppArmadillo RcppParallel Rtsne uwot]; }; fastWavelets = derive2 { name="fastWavelets"; version="1.0.1"; sha256="1kz49iw3d37kby6hdk7zvsahms735w46pky186jz0qq9vh4agxn9"; depends=[Rcpp]; }; fasta = derive2 { name="fasta"; version="0.1.0"; sha256="0wnppxn3039dj58xm0b66fsyq537bk8k8m56im11xj1iwc3zc6vw"; depends=[]; }; fastadi = derive2 { name="fastadi"; version="0.1.1"; sha256="1hvi430ws1yzw10fp4z177wc1bnj11pxmvjsbmx0p54bcbb3a32a"; depends=[ellipsis glue logger LRMF3 Matrix Rcpp RcppArmadillo RSpectra]; }; fastai = derive2 { name="fastai"; version="2.2.1"; sha256="1glq64hhwrwp29scf851nb6nl83hpvvy8cj37z2r36r89i5inp4b"; depends=[generics ggplot2 ggpubr glue png reticulate]; }; - fastbeta = derive2 { name="fastbeta"; version="0.1.0"; sha256="0jbvbdq3hdmp01wz9y1nidfzm80m3d0gdz6p8wi0wm32zxxh4c3q"; depends=[adaptivetau deSolve]; }; + fastbeta = derive2 { name="fastbeta"; version="0.2.0"; sha256="1lcs8zr25bk1gh9b7grpf1y4pkp455glh0c9vaa0gl6ygy2xd558"; depends=[adaptivetau deSolve]; }; fastcluster = derive2 { name="fastcluster"; version="1.2.3"; sha256="009amz7i5yndqw2008fgd3p11n4fsb291k2ypg3pip6dw4lr28hz"; depends=[]; }; fastcmh = derive2 { name="fastcmh"; version="0.2.7"; sha256="0hib3r3pkfdi67bdy4pf1pw6869vq4b3pg1pq1zwpyy76nbnq9vl"; depends=[bindata Rcpp]; }; fastcox = derive2 { name="fastcox"; version="1.1.3"; sha256="0jn19v6mkwgyz8x63xrfgkgnf0f2rq338r5qkhz690mdzr4c47a3"; depends=[Matrix]; }; - fastcpd = derive2 { name="fastcpd"; version="0.9.0"; sha256="0i68411h1cdh4jpz8a7fg0ns1zvwdn7zpbarciy0swldq8v43xi1"; depends=[DescTools fastglm glmnet Matrix Rcpp RcppArmadillo testthat]; }; + fastcpd = derive2 { name="fastcpd"; version="0.10.0"; sha256="0shqfpwpfwcwywp55jcrrfmrkan19lna9ld7y2biamirqjsgfb1l"; depends=[fastglm forecast glmnet Matrix progress Rcpp RcppArmadillo testthat tseries]; }; fastdigest = derive2 { name="fastdigest"; version="0.6-3"; sha256="02csl261v7nassi5119ygw6jglm8q6rssg7lgyxzj73mkyilm832"; depends=[]; }; fasterElasticNet = derive2 { name="fasterElasticNet"; version="1.1.2"; sha256="1hr0wc6s6zpq1hkfgshf0dqjxb7s2849bb8lb04nmi6p42r3628g"; depends=[Rcpp RcppArmadillo]; }; - fasterize = derive2 { name="fasterize"; version="1.0.4"; sha256="1ckxi2iyxdahhgbliblcrkzziblfagzr54srjk27yp1lcgivvvs4"; depends=[raster Rcpp RcppArmadillo sp]; }; + fasterize = derive2 { name="fasterize"; version="1.0.5"; sha256="1d63q77hfbn2ly8cwsik4gaavdhidpi7idf7qj2y5bi9xhd10kyl"; depends=[raster Rcpp RcppArmadillo wk]; }; fastglm = derive2 { name="fastglm"; version="0.0.3"; sha256="0283kgk81cxbii7ljmp1rzqg5mzkvf7cj7lflhhhkgj5ljqina2i"; depends=[BH bigmemory Rcpp RcppEigen]; }; fastkmedoids = derive2 { name="fastkmedoids"; version="1.2"; sha256="1z98ndxhq2ag870g0xqkw04b4k722994vh0pq46bw8bqc9v7bpkk"; depends=[Rcpp]; }; fastlogitME = derive2 { name="fastlogitME"; version="0.1.0"; sha256="1wpbcjb3ncxl904492alikslnqg53zgx6psxx7qllspd43s8ymv7"; depends=[]; }; fastlogranktest = derive2 { name="fastlogranktest"; version="0.2.1"; sha256="1j5mgvi3nwnlarj31cknx2cikypql370qds2h0877vmm80942z25"; depends=[BH Rcpp]; }; fastmap = derive2 { name="fastmap"; version="1.1.1"; sha256="0wvibiy16i30nzg5k80md68lpz7g6iwbl02j4fyqmbhns2fq08rn"; depends=[]; }; fastmatch = derive2 { name="fastmatch"; version="1.1-4"; sha256="0symkcmyrqvz6hkawr40ga808rb3w4hy9ssfsi5ri8hykjn4r4cs"; depends=[]; }; - fastmatrix = derive2 { name="fastmatrix"; version="0.5-7"; sha256="1c60fzk3wz4nigbws9gwzvnlip9vkg14lmazh043xbp6rjpn3dnw"; depends=[]; }; + fastmatrix = derive2 { name="fastmatrix"; version="0.5-77"; sha256="11035qsr4b1dsn73mf4zxq5w1c5p9qgyyimwfi9qs2d0aprsin0d"; depends=[]; }; fastmit = derive2 { name="fastmit"; version="0.1.1"; sha256="13hczsfbzssd272kpbq8l2l64lqrkmi2j6f3xyp9jvvxdd506kq0"; depends=[Rcpp RcppArmadillo]; }; fastnet = derive2 { name="fastnet"; version="1.0.0"; sha256="1c07msypxj8ilpa1il9jjbgylwpdxv8j8gak362xdmbm4b1bwlm6"; depends=[doParallel foreach igraph tidygraph]; }; fastpos = derive2 { name="fastpos"; version="0.5.1"; sha256="0a55fydlcn2h27vizv4w3gma26v2a32li81x09hvk519yfy8ph1k"; depends=[lifecycle MASS pbmcapply plyr Rcpp RcppArmadillo RcppProgress tibble]; }; @@ -9660,19 +9840,20 @@ in with self; { favnums = derive2 { name="favnums"; version="1.0.0"; sha256="0siax7gjr25lpf1li3hawx6nviggs68c0lap2d9i38azlhvj891w"; depends=[]; }; fbRads = derive2 { name="fbRads"; version="17.0.0"; sha256="0kfbd0dc0k72qj5vd1bm11lqi6p61z7fmr8507fsc6ggcr97vw76"; depends=[bit64 data_table digest jsonlite logger plyr RCurl]; }; fbar = derive2 { name="fbar"; version="0.6.0"; sha256="005725xiz6k868hrj12ryq3xlyin2r94n0yychimjzhfsppx2zba"; depends=[assertthat dplyr magrittr Matrix purrr rlang ROI ROI_plugin_ecos stringr tibble tidyr]; }; - fbati = derive2 { name="fbati"; version="1.0-7"; sha256="1w1yvv93yzvkqhq9w1c05bwqy3kr08b4bxzzvy0x03zdild10bly"; depends=[fgui pbatR rootSolve]; }; + fbati = derive2 { name="fbati"; version="1.0-8"; sha256="1wgcahd46h2q3ihd8hjav6qvlar7iglxg8njbnl5h7zix7h0q7c6"; depends=[fgui pbatR rootSolve]; }; fbnet = derive2 { name="fbnet"; version="1.0.3"; sha256="0jz3jbd2qna4mnas0mjs32wvlk6vzlw61qb9fql65al40401b23x"; depends=[assertthat igraph paramlink Rsolnp]; }; fbroc = derive2 { name="fbroc"; version="0.4.1"; sha256="1v73wl3yckcqx43fz1lzcsy6v08vmbmi7yi623yhgqywixxv2bx3"; depends=[ggplot2 Rcpp]; }; fbst = derive2 { name="fbst"; version="2.1"; sha256="15d73hngw8607la36cpl5z7ac18cpwkmqzp67ga2c5n94z2h8asc"; depends=[bayestestR cubature ks rstanarm viridis]; }; fc = derive2 { name="fc"; version="0.1.0"; sha256="0x41xfchy499kz0qi7fp12vpkbcddprv19mmk48lxzavv4f5avfh"; depends=[codetools]; }; fca = derive2 { name="fca"; version="0.1.0"; sha256="0jcdyylb0byz70k3kypa2mdd5sc5nq81jfbpljjg2amczq7s5wzy"; depends=[]; }; - fcaR = derive2 { name="fcaR"; version="1.2.1"; sha256="07p6jvciawx0n11q6vqibqvwp8y1336wvpbw0imisw2ksw6vhdwa"; depends=[forcats fractional glue magrittr Matrix POSetR purrr R6 Rcpp registry settings stringr tibble tikzDevice]; }; + fcaR = derive2 { name="fcaR"; version="1.2.2"; sha256="1vrysvdjqs62hx14kq31jmi2r093k5pcjjbrzvvpdmnllcv1s673"; depends=[dplyr forcats fractional ggplot2 glue magrittr Matrix POSetR purrr R6 Rcpp registry rlang settings stringr tibble tidyr tikzDevice]; }; fcci = derive2 { name="fcci"; version="1.0.1"; sha256="02q6q0q7fqdbp20fdf33jbkh0aj9nzl6dwysr0nn146ciz3vqgin"; depends=[assertthat Rcpp rlang]; }; fcfdr = derive2 { name="fcfdr"; version="1.0.0"; sha256="16mnpr64x00qwbgq9pw69k941yb0i7mx7ncsilahicprxqyfpfww"; depends=[bigsplines cowplot data_table dplyr fields ggplot2 hexbin Hmisc locfdr MASS polyCub spatstat_geom]; }; fcirt = derive2 { name="fcirt"; version="0.1.0"; sha256="1wiyiz51mkm5kd95xmpvlwng51awpp4y133dd5q88mnafrxyij1h"; depends=[BH numDeriv Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; fcl = derive2 { name="fcl"; version="0.1.0"; sha256="0rskl9q7z5k5q17m3c5w4pdc96m6fdag7nkkjmyyh43wbm4bjb0a"; depends=[xts ymd]; }; fclust = derive2 { name="fclust"; version="2.1.1.1"; sha256="1d5qa30jlx6qn6npvccl97fcmh5a4wf3nw0d7jvn3y7mcb5yqlqk"; depends=[MASS Rcpp RcppArmadillo]; }; fcm = derive2 { name="fcm"; version="0.1.3"; sha256="1mqk6szczsixdvw0inkypij4cw2syng5l5ccw0xk55kc21l1lzn0"; depends=[ggplot2 reshape2]; }; + fcp = derive2 { name="fcp"; version="0.1.0"; sha256="18sx6g8g26dqxrd009akpwrngij557nqbwaa4zj2wg7vzkvj571k"; depends=[]; }; fcr = derive2 { name="fcr"; version="1.0"; sha256="17jrz5zp1msd2khl1lwnb5sgxcigagni556rhn7qm9g0aykbh8yj"; depends=[face fields mgcv]; }; fcros = derive2 { name="fcros"; version="1.6.1"; sha256="04yr6lqs38lczsmdvdm78qn63836qj7xwspgh3h3n3gh8cssd83x"; depends=[]; }; fctbases = derive2 { name="fctbases"; version="1.1.1"; sha256="19ay3n7m9r72szzxlyd9yrpgajfl8dy75f54cfvmj130p9sv3jfq"; depends=[Rcpp RcppArmadillo]; }; @@ -9683,16 +9864,16 @@ in with self; { fdaACF = derive2 { name="fdaACF"; version="1.0.0"; sha256="0qrsj25p6h2xg25v0ayk8x31d4whyy0mpf2xdpw3hcwhb71mbfhn"; depends=[CompQuadForm fda pracma vars]; }; fdaMixed = derive2 { name="fdaMixed"; version="0.6.1"; sha256="1fv5jdz7ri9cf5wj0p0gdc60r75biifijqr1g3lz095cxsn7f9j0"; depends=[Formula Rcpp RcppArmadillo]; }; fdaMocca = derive2 { name="fdaMocca"; version="0.1-1"; sha256="0y54d8a38d5hjnh8iw2r4zl2d2xz72hjddhxbar91jk6zf3kzpsy"; depends=[doParallel fda foreach Matrix mvtnorm]; }; - fdaPDE = derive2 { name="fdaPDE"; version="1.1-16"; sha256="0z5plkig2df8scvx07wmd4f0w0pp1ddfafg70shcic6lahg2xk27"; depends=[Matrix plot3D Rcpp RcppEigen rgl]; }; + fdaPDE = derive2 { name="fdaPDE"; version="1.1-17"; sha256="1h3v36mmlycs34z4a19sfjkr5xm8lq44qgv6jb908fy66m1fcsfa"; depends=[Matrix plot3D Rcpp RcppEigen rgl]; }; fdaPOIFD = derive2 { name="fdaPOIFD"; version="1.0.3"; sha256="0c773hidrg69gs9lzdcwf4hzzmid3kwf73pw6c807y1b4lgiai20"; depends=[FastGP fdapace ggplot2 magrittr MASS patchwork reshape2 tibble]; }; fdaSP = derive2 { name="fdaSP"; version="1.1.1"; sha256="1vhnrw2shxnpd2vnqkjq8lqx344p3z488x8wzpkb8hxnxzmfp08w"; depends=[doParallel foreach ks pracma Rcpp RcppArmadillo Rdpack]; }; fdacluster = derive2 { name="fdacluster"; version="0.3.0"; sha256="0mpnhd6qp4hif1sbxv52dyg3yfff8icn8xz7sximcjn00g81p343"; depends=[cli cluster dbscan dplyr fdasrvf forcats furrr ggplot2 lpSolve nloptr progressr purrr Rcpp RcppArmadillo rlang tibble tidyr withr]; }; - fdaconcur = derive2 { name="fdaconcur"; version="0.1.1"; sha256="0i0wvaplcfl021hjh6f6qlimx0hrsxq18l8v4j2bvrnsr3allj60"; depends=[fdapace]; }; + fdaconcur = derive2 { name="fdaconcur"; version="0.1.2"; sha256="1ajmm8lrd9lnl8smkjrnnsnfjmb0dnbhrglg1gdcajvr937rhjsa"; depends=[fdapace]; }; fdadensity = derive2 { name="fdadensity"; version="0.1.2"; sha256="1i2xzchlsixgjzyfmbv547sy6mq90xrnyc2kpd11wwfgfrpj1ix3"; depends=[fdapace Rcpp]; }; fdaoutlier = derive2 { name="fdaoutlier"; version="0.2.1"; sha256="0jxq46ch0sddl08n2i71zwx2d6qdxayb012qkrc8pki2rvkcqy77"; depends=[MASS]; }; fdapace = derive2 { name="fdapace"; version="0.5.9"; sha256="16j731d7y290xk5qvld59pb78mrch5i61szcf3j79kkirmz6hh8f"; depends=[Hmisc MASS Matrix numDeriv pracma Rcpp RcppEigen]; }; fdapaceShiny = derive2 { name="fdapaceShiny"; version="1.0.5"; sha256="1cy1rcmsyr78q3wqkaw3lvqzlr07n7djrqqpwm3y8xz60fybs8p6"; depends=[bs4Dash config dplyr DT fdapace ggplot2 golem htmltools magrittr plotly purrr reshape2 shiny shinyjs shinyWidgets stringr tidyr]; }; - fdasrvf = derive2 { name="fdasrvf"; version="2.0.3"; sha256="1m9wn9lbpg7ib3clqydcnrclrjw4yany0cmhmvvkar1dk8r0qar9"; depends=[cli coda doParallel fields foreach lpSolve Matrix mvtnorm Rcpp RcppArmadillo rlang tolerance viridisLite]; }; + fdasrvf = derive2 { name="fdasrvf"; version="2.1.2"; sha256="1y078ynrby25k09wd4i6pghk7n69cmf3a184fzqp28s1xgv1vyfb"; depends=[cli coda doParallel fields foreach lpSolve Matrix mvtnorm Rcpp RcppArmadillo rlang tolerance viridisLite]; }; fdatest = derive2 { name="fdatest"; version="2.1.1"; sha256="13sd85ypx2z07qxsqhsbc5w0yasf01yw06qx91ymh0yr8538x3x3"; depends=[fda]; }; fddm = derive2 { name="fddm"; version="0.5-2"; sha256="0sh3qnsakl02wpzwhxyqdikn7xx5crh401w3d149ww2jxvagjmsf"; depends=[Rcpp]; }; fdicdata = derive2 { name="fdicdata"; version="0.1.0"; sha256="1zz8wd124bbjn2fjllq8hc00r475w96bcaphcgxbqr9hfzzjpg2f"; depends=[dplyr httr yaml]; }; @@ -9702,7 +9883,7 @@ in with self; { fdrci = derive2 { name="fdrci"; version="2.4"; sha256="0pc1iv7cari3gl5v6w62ix0y7ll4dqsm4sk5a5ipbarfx11irkgj"; depends=[ggplot2]; }; fdrtool = derive2 { name="fdrtool"; version="1.2.17"; sha256="1pf554vb902vavgqc4c0kgghywbgcvr3lkkr414bxngavcd60lil"; depends=[]; }; fds = derive2 { name="fds"; version="1.8"; sha256="1284vncixrzrz9x6b52gslrbrbia07sd0xac7nwdqhp5f5v5wfi0"; depends=[rainbow RCurl]; }; - fdth = derive2 { name="fdth"; version="1.2-6"; sha256="179qkmdr18nx5hrx78sh64r76h7n3v00rxyg2d7l0n8kzbbi9q1v"; depends=[xtable]; }; + fdth = derive2 { name="fdth"; version="1.3-0"; sha256="00jshwx460rg0p79j9w6grr8zs9lla8mhmfpysvwmxckq8zm4k2w"; depends=[xtable]; }; feasts = derive2 { name="feasts"; version="0.3.1"; sha256="1yvpfpwxk5hrcs4lq8dwjwhf1zfrbyv75sxi1wcnziykhyjz7rnw"; depends=[dplyr fabletools ggplot2 gtable lifecycle lubridate rlang scales slider tibble tidyr tsibble vctrs]; }; feather = derive2 { name="feather"; version="0.3.5"; sha256="1gxd0h2m56sjjlzn4dry6s13nddxc4l5i11gsvavaf2dwbahdzsh"; depends=[hms Rcpp tibble]; }; feature = derive2 { name="feature"; version="1.2.15"; sha256="0yzn1w1sasilcp8v0pcjnxjv9l6lspkskqi412i6h040gqmjjf6y"; depends=[ks plot3D]; }; @@ -9721,13 +9902,13 @@ in with self; { fedz1 = derive2 { name="fedz1"; version="0.1.0"; sha256="1havzbpqwlc32qmr2mpdxczjj918aig7l0iz669pkgxgqxf8dq5x"; depends=[]; }; feisr = derive2 { name="feisr"; version="1.3.0"; sha256="1i89w3n365k4fwgiifb2f68ag11f96rrxqxradrjvbmi7r80md99"; depends=[dplyr Formula plm Rdpack]; }; felp = derive2 { name="felp"; version="0.3.0"; sha256="134kv7mj3ajgcl7z8dq0vjx3yqy2awlpn3xs39q7yl7z5kz6i44g"; depends=[curl data_table dplyr htmltools magrittr matrixStats miniUI prettycode reactable rlang rstudioapi shiny stringi]; }; - feltr = derive2 { name="feltr"; version="0.0.2"; sha256="1vi0dz25pnn0im5bgp5swfdyavq75ywi6j0ivwplbvcj25nny55f"; depends=[cli curl fs geojsonsf httr2 jsonlite purrr rlang sf stringr tibble]; }; + feltr = derive2 { name="feltr"; version="0.0.4"; sha256="1cn6kwkvcy91ng5d67x2hs853k5dqhlap6yym1xfw741f11dx1zy"; depends=[cli curl fs geojsonsf httr2 jsonlite purrr rlang sf stringr tibble tidyr]; }; fence = derive2 { name="fence"; version="1.0"; sha256="18l3fliww60d9n9hbfdny5vr9mi78krwpjj5sypdsb77d6332h9q"; depends=[fields ggplot2 lme4 MASS sae snow snowfall]; }; fergm = derive2 { name="fergm"; version="1.1.4"; sha256="1d979z2m5f13i1w9d8kh9rnaafavsap169w0nycpd5j2f3dfhyn7"; depends=[ergm extrafont ggplot2 matrixStats network reshape2 rstan]; }; fermicatsR = derive2 { name="fermicatsR"; version="1.4"; sha256="1587f67fypj22rdi1319zq765lcc9z518bzl1jr4lz6c8lrzfm9i"; depends=[]; }; ferrn = derive2 { name="ferrn"; version="0.0.2"; sha256="0yxw18yzj5j2fpj4rf9flmmng4s2ldgx4yaywa2hrclbnl43c578"; depends=[dplyr geozoo gganimate ggforce ggplot2 ggrepel magrittr purrr rlang scales stringr tibble tidyr tourr]; }; fertilmodel = derive2 { name="fertilmodel"; version="1.1"; sha256="0q0mf8n3fc53bqjsv5c4mcfm4vjhyy2hw8rh1bsjsj71xmih50a4"; depends=[quadprog]; }; - fetch = derive2 { name="fetch"; version="0.1.3"; sha256="1q1rwfk4j8fvgxjhjpzdg6d0klcd39g55lcwhaznsj66ixwib84i"; depends=[crayon foreign haven readr readxl tibble]; }; + fetch = derive2 { name="fetch"; version="0.1.4"; sha256="0xkaj5a0fiq0ph3702d6nc5fwjk1phngkkrckdv3v4pshii46a4y"; depends=[crayon foreign haven readr readxl tibble]; }; fetchGoogleAnalyticsR = derive2 { name="fetchGoogleAnalyticsR"; version="0.1.0"; sha256="12s18jicx9rd5dhc8l7hm09lr71nhz6k72j3w4c1j5ds9h522krg"; depends=[jsonlite]; }; fetchSalesforceR = derive2 { name="fetchSalesforceR"; version="0.1.0"; sha256="1826i031wndasgcxxa0bh88vp1r49flzphyfk79pixvlrfjn6gi8"; depends=[jsonlite]; }; ff = derive2 { name="ff"; version="4.0.9"; sha256="0krwxq4985x3n5mzx8i9smwpkd5sifbfgy9z7ikwk84734km683j"; depends=[bit]; }; @@ -9737,7 +9918,7 @@ in with self; { ffscrapr = derive2 { name="ffscrapr"; version="1.4.8"; sha256="0dxr7w64wjw1i1bspdj641m1dmgz85bgdapf2k2wba077zkmhhv4"; depends=[cachem checkmate cli dplyr glue httr jsonlite lifecycle magrittr memoise nflreadr purrr rappdirs ratelimitr rlang stringr tibble tidyr]; }; ffsimulator = derive2 { name="ffsimulator"; version="1.2.3"; sha256="0vl8sr32l5l4v6jb59ch98fg850d6w8zqqy2v8zay7v04qwbwqiz"; depends=[checkmate cli data_table ffscrapr glue magrittr nflreadr Rglpk rlang tidytable]; }; ffstream = derive2 { name="ffstream"; version="0.1.7.2"; sha256="0xc549sp443isn3rk96m28wsrsg66qzsvz51nx9bykjzi3zy5wjk"; depends=[Rcpp]; }; - fftw = derive2 { name="fftw"; version="1.0-7"; sha256="07isxi72ppw7p3inn3pmwr2ha51p981iz3diw3rhgqc4gd3677zn"; depends=[]; }; + fftw = derive2 { name="fftw"; version="1.0-8"; sha256="0846s0ix2qj4dg8r9gpydsymbh2qyqnadgsaaph7dvd0cqb02zlc"; depends=[]; }; fftwtools = derive2 { name="fftwtools"; version="0.9-11"; sha256="0zrchp4l0jdbir2gibjf00x225y9giqk80zvqmr2yyvc12lwkw7i"; depends=[]; }; fgdr = derive2 { name="fgdr"; version="1.1.1"; sha256="12rccdh1dmh8azwid8wgkdz8d7lqrdzr5n294j2fawqf4naff2gm"; depends=[data_table jpmesh magrittr purrr raster readr rlang sf stars stringr terra tibble units xml2]; }; fgeo = derive2 { name="fgeo"; version="1.1.4"; sha256="0axglmk05li3plb79rccskhddjzq3pdx3mgxr8yqysymf1nscrq6"; depends=[cli crayon dplyr fgeo_analyze fgeo_plot fgeo_tool fgeo_x glue magrittr purrr rlang rstudioapi]; }; @@ -9761,12 +9942,13 @@ in with self; { figma = derive2 { name="figma"; version="0.2.0"; sha256="0031sz7nbnlhv9iqaandq9sscxsy29p82s3c63z89jin4dkfjq4x"; depends=[dplyr httr purrr rlang tibble tidyr]; }; figpatch = derive2 { name="figpatch"; version="0.2"; sha256="0sy63131al6z0hlhpb11aphlxdigb0pqk9bq9mxc9nbc59036jjq"; depends=[ggplot2 magick magrittr patchwork]; }; figuRes2 = derive2 { name="figuRes2"; version="1.0.0"; sha256="1s1bvhgzczkpxfmi1cyz4cfvpxvq28fm5867a4w5q0wpjcbhlma4"; depends=[ggplot2 gridExtra gtable plyr reshape2 scales stringr survival]; }; - file2meco = derive2 { name="file2meco"; version="0.6.0"; sha256="02kbpyfzr98ra55mbw7l9d1haz8p97fwbn5knglz7875b5knqx4b"; depends=[ape dplyr magrittr Matrix microeco rhdf5 tidyr yaml]; }; + file2meco = derive2 { name="file2meco"; version="0.7.0"; sha256="1m1kp0hkhyql55ac84i7mcfihpc97ypvrhvnvy3yv86kyj8b4gzn"; depends=[ape dplyr magrittr Matrix microeco rhdf5 tidyr yaml]; }; filearray = derive2 { name="filearray"; version="0.1.6"; sha256="1xf48fgf70s9h5gjls8625m553lkdbinnz89nxn05l9wakhf5qgv"; depends=[BH digest fastmap Rcpp uuid]; }; filebin = derive2 { name="filebin"; version="0.0.6"; sha256="006fj66y9sb9i58na85bpv1ilwka9vcwmqkwpc3ax95vigy36n5j"; depends=[dplyr httr janitor logger purrr stringi tibble tidyr]; }; + filecacher = derive2 { name="filecacher"; version="0.2.7"; sha256="00rxbll8gmzcyfyf3dlbahwi4x037cwx3k3dxqg5l1zgapyhddnr"; depends=[cachem glue here purrr rlang vctrs]; }; filehash = derive2 { name="filehash"; version="2.4-5"; sha256="0b52bnsqp65s3r4aw9mvfwfnjmsrqq8ndcadwig547nn9mwy47iv"; depends=[digest]; }; filehashSQLite = derive2 { name="filehashSQLite"; version="0.2-6"; sha256="1758wpzq2h7biwpdlrqhi84k35fbpfpxnji6j79zisr825fqjkpq"; depends=[DBI filehash RSQLite]; }; - filelock = derive2 { name="filelock"; version="1.0.2"; sha256="00ql5fw1hidpfnm0szaavf43ahmsnvdbi8i5lr1nrcc90yaiaadc"; depends=[]; }; + filelock = derive2 { name="filelock"; version="1.0.3"; sha256="0dqi0w92zq1f9542ma2nk5gkqzfmd4jlf34vysb4vv7mag20xk9d"; depends=[]; }; filematrix = derive2 { name="filematrix"; version="1.3"; sha256="1v3aj1ng742msb0sfdnjsbqb508mqjf8jlq2v33vxldhradw5w0b"; depends=[]; }; filenamer = derive2 { name="filenamer"; version="0.2.3"; sha256="19gavhh5q7dziv0yc000w06qp58wk2cm52cxjl33p1q4cjk6gg3m"; depends=[]; }; files = derive2 { name="files"; version="0.0.1"; sha256="1vhhawqjjbb6fadkn3l10mvz63w3vmcwvl93fk0q9mhkifzlj9kc"; depends=[]; }; @@ -9775,7 +9957,7 @@ in with self; { fillr = derive2 { name="fillr"; version="1.0.0"; sha256="1gx1ihp8j90ywmm6mmmfq4jd6apxawk9s5dfw3jq0wm1c290zqpv"; depends=[]; }; filteRjsats = derive2 { name="filteRjsats"; version="1.0"; sha256="19zi44av3f5zahinqvgz5bvgh82qrpg4r4fffwjh8a09s975q5mg"; depends=[broman dplyr lubridate rerddap stringr tidyr]; }; filterNHP = derive2 { name="filterNHP"; version="0.1.2"; sha256="0kk6548nr5786ywa83v8by4c1n7ljh9sy4fshpfqizp49fv9zv22"; depends=[data_tree rclipboard shiny shinyBS shinyjs shinyWidgets]; }; - finalfit = derive2 { name="finalfit"; version="1.0.6"; sha256="16jbmzs5hx328vvggk5g3q5rmyaf82dmxgifjv28w2lb80ryjay1"; depends=[bdsmatrix boot broom dplyr forcats GGally ggplot2 gridExtra lme4 magrittr mice pillar pROC purrr scales stringr survival tidyr tidyselect]; }; + finalfit = derive2 { name="finalfit"; version="1.0.7"; sha256="04nskvkqd999wjxy7lkanrd4iyfn8xljagyafw1ai7mfiqxgmfag"; depends=[bdsmatrix boot broom dplyr forcats GGally ggplot2 gridExtra lme4 magrittr mice pillar pROC purrr scales stringr survival tidyr tidyselect]; }; finalsize = derive2 { name="finalsize"; version="0.2.0"; sha256="18nyyl8c121kfr22vanvgbma627w98v39d4n34kr8hd8iw8jx5lx"; depends=[checkmate Rcpp RcppEigen]; }; finbif = derive2 { name="finbif"; version="0.9.3"; sha256="122jhz1xvf75y61nwjlvclcrkqb1ya8yfzb3qimi0ylz8c3xfw78"; depends=[digest httr lubridate lutz]; }; finbipartite = derive2 { name="finbipartite"; version="0.1.0"; sha256="0sws39nya8y7v78v4nlaz5g2nj4sgq5n5iwhfkyyq6h87slw2h8c"; depends=[CVXR MASS mvtnorm progress quadprog spectralGraphTopology]; }; @@ -9792,18 +9974,19 @@ in with self; { fingerprint = derive2 { name="fingerprint"; version="3.5.7"; sha256="04jcwkydjrs31pia6kq8z2n9s54im950q08hs2ay15xjxxkmb8ic"; depends=[]; }; fingraph = derive2 { name="fingraph"; version="0.1.0"; sha256="130kfhxxxf6cg7ww71nfrwhwrkp52v7zc0qarpjv84826k00cpcq"; depends=[MASS mvtnorm progress spectralGraphTopology]; }; finiteruinprob = derive2 { name="finiteruinprob"; version="0.6"; sha256="0z4l0crymh58chxniqq70fqmvi6f5jkgvz72vbc7s3l9lrrapgr3"; depends=[numDeriv sdprisk]; }; - finity = derive2 { name="finity"; version="0.1.4.1"; sha256="0xs3vx0vj165hj4dq8ivrdf6fcvj23zhp2ai79rgpyb5rr5ndkvc"; depends=[BH Rcpp RcppArmadillo stabledist]; }; + finity = derive2 { name="finity"; version="0.1.5"; sha256="0jsga609p1ja727k4bq7ffrs2h7ll3cfq27y4w6nh0qlc0gl99al"; depends=[BH Rcpp RcppArmadillo stabledist]; }; finnishgrid = derive2 { name="finnishgrid"; version="0.1.0"; sha256="0gndrllz3y7yqrg5vw6ba7dg7hn4w3085rpy7h9hdd8swxqfvlc6"; depends=[httr jsonlite]; }; - finnts = derive2 { name="finnts"; version="0.3.0"; sha256="01h027inzl56n8h6mqbmnkpy5hia70wdsh0agp7d1k0rkzwh3cia"; depends=[cli Cubist dials digest doParallel dplyr earth foreach fs generics glmnet glue gtools hts kernlab lubridate magrittr modeltime parsnip plyr purrr recipes rsample rules snakecase stringr tibble tidyr tidyselect timetk tune vroom workflows yardstick]; }; + finnts = derive2 { name="finnts"; version="0.4.0"; sha256="1cx9kl6dzkmrxb4i7vlkligx5p1q2jxinybmi1367hlpgafhv6js"; depends=[cli Cubist dials digest doParallel dplyr earth feasts foreach fs generics glmnet glue gtools hts kernlab lubridate magrittr modeltime parsnip plyr purrr recipes rsample rules snakecase stringr tibble tidyr tidyselect timetk tune vroom workflows]; }; finreportr = derive2 { name="finreportr"; version="1.0.4"; sha256="145idg2c6qmqp29afalnhxxzky08j21dmm05mp3zf63aq9mq41d4"; depends=[curl dplyr httr rvest XBRL xml2]; }; fipio = derive2 { name="fipio"; version="1.1.1"; sha256="0wvx64nazbv44hdsj3q6mz70m81asmwgxp28sapaaal36l180jfs"; depends=[]; }; fipp = derive2 { name="fipp"; version="1.0.0"; sha256="0wr3czwsqwa1bpdcjk0r1739vjanxc0fv0vnl3r5lgykrbhw9v3r"; depends=[matrixStats Rcpp RcppArmadillo]; }; firebase = derive2 { name="firebase"; version="1.0.2"; sha256="1dw7w5kg0bmqxlikqqmpij5r4js5m7dcs9qrx4gd8a61j4099sr1"; depends=[base64enc cli htmltools jose jsonlite openssl shiny]; }; firebehavioR = derive2 { name="firebehavioR"; version="0.1.2"; sha256="10krny60dkpgwjjnriap91qmrnfq1rl5ck4ynf4h6x016bv0m374"; depends=[ggplot2]; }; fishMod = derive2 { name="fishMod"; version="0.29"; sha256="0pbs4z27vwa3c42xdw3mr6l2i581bgvn2pk52kawbcnnlsff92ar"; depends=[]; }; + fishRman = derive2 { name="fishRman"; version="1.2.2"; sha256="09kzjcngycf1xvcyszqfsrn6iypn4n86cz0h2cmwv0i6hc8k0jwb"; depends=[config countrycode dplyr ggplot2 golem httr jsonlite maps sf shiny shinyBS shinyjs shinyWidgets viridis]; }; fishbc = derive2 { name="fishbc"; version="0.2.1"; sha256="15mlr113qgndjhyry8img50jfk0si81kw2cdgl896b0g4djc5la3"; depends=[]; }; fishdata = derive2 { name="fishdata"; version="1.0.1"; sha256="0hskmw93pyrm5wxn1dw8vi18v11jnf03yx375hjkk38hcfnp6n5k"; depends=[]; }; - fisheye = derive2 { name="fisheye"; version="0.1.0"; sha256="0yrgr0nhnn768q6hc2dsjz7y3n7p7ci0rdfqsickafgv2srdrh83"; depends=[sf]; }; + fisheye = derive2 { name="fisheye"; version="0.2.0"; sha256="0w07mkfdv422drrd80yjd9syicadyzl213n1xm1bkz1zlkhdw4xz"; depends=[sf]; }; fishkirkko2015 = derive2 { name="fishkirkko2015"; version="1.0.0"; sha256="1s8vsf604rc6qk0gahn61p3q8p9dhsbq14wsmrin7icq2xgl3y81"; depends=[]; }; fishmethods = derive2 { name="fishmethods"; version="1.12-1"; sha256="0ladr3rl55v10kh0556725gygiw338mj3ncpifaij80rph99y66v"; depends=[boot bootstrap data_table lme4 MASS numDeriv TMB]; }; fishtree = derive2 { name="fishtree"; version="0.3.4"; sha256="00g8p885z5xcqp2chncb177s0l6lab2f069szj861z9dyf93xx4z"; depends=[ape jsonlite memoise rlang]; }; @@ -9831,7 +10014,7 @@ in with self; { fixedincome = derive2 { name="fixedincome"; version="0.0.5"; sha256="16wxd12hid468d1rfczyrb2ffnja0vx9mnqdg9dhdp0nlj78xx99"; depends=[bizdays ggplot2 scales]; }; fixedpointproperty = derive2 { name="fixedpointproperty"; version="1.0"; sha256="125vfk92mhixachg2qp5ffvf8ggvrfc62970vzmc8fiq83lbzgs1"; depends=[BayesFactor]; }; fixerapi = derive2 { name="fixerapi"; version="0.1.6"; sha256="0ikf8dn0l9c9gshp4bph3wasl0bh6lfybinc8n1rvb202231hmgb"; depends=[jsonlite tibble tidyr]; }; - fixest = derive2 { name="fixest"; version="0.11.1"; sha256="1q771z9m7sdzq4pbx4fwcz26d4cbjkmqjrdac0wnr9pbv81y3z0k"; depends=[dreamerr nlme numDeriv Rcpp sandwich]; }; + fixest = derive2 { name="fixest"; version="0.11.2"; sha256="0r9b1shiwz4739hq953gacvmnjm9r4sisi9chkfw9rc90qx13vid"; depends=[dreamerr nlme numDeriv Rcpp sandwich]; }; fixr = derive2 { name="fixr"; version="0.1.0"; sha256="074dr1l3bw8v1lrih1mc51dmx02kambis04r9jpx64vnpajjfv8p"; depends=[httr RCurl xml2]; }; fixtuRes = derive2 { name="fixtuRes"; version="0.1.3"; sha256="1vmdbx1pfk4kcxq5q5hj4v6rz403xw66gpg6zpvrxkpcgkx2dwyz"; depends=[checkmate dplyr glue lubridate purrr R6 rlang stringi yaml]; }; fizzbuzzR = derive2 { name="fizzbuzzR"; version="0.1.1"; sha256="119gbi9y4n8r52hk9vj7zf795dv9xnk7lnngljjcd7ydnhygwd4h"; depends=[]; }; @@ -9848,9 +10031,10 @@ in with self; { flashlight = derive2 { name="flashlight"; version="0.9.0"; sha256="0nyxx7zrqw8fgy1n81n30m80z7xwkydnhmxj6c22mq83md08rd8c"; depends=[cowplot dplyr ggplot2 MetricsWeighted rlang rpart rpart_plot tibble tidyr tidyselect withr]; }; flashr = derive2 { name="flashr"; version="0.1.1"; sha256="0cvpjyjylcz61jmmar2aynvcqh7m41ljkdqmgwmiwiy26qi6clqn"; depends=[cli curl gh httr memoise revealjs rmarkdown testthat]; }; flatr = derive2 { name="flatr"; version="0.1.1"; sha256="10l98a3f57wahfpdqxj70r25zfhk4vzzd014pdnriy458yrfd7rw"; depends=[dplyr magrittr tibble]; }; - flattabler = derive2 { name="flattabler"; version="2.1.0"; sha256="10jii2xl100fjawhz9qlwnj2b3fa9pfipc8jli4qa03f1w3n7xmp"; depends=[dplyr readxl stringr tibble]; }; + flattabler = derive2 { name="flattabler"; version="2.1.1"; sha256="1yls9md276fhz46mcfn676g24mk0rhyyfhkbysfs59fs58037s9j"; depends=[dplyr readr readxl stringr tibble]; }; flatxml = derive2 { name="flatxml"; version="0.1.1"; sha256="1qsiqi8aszk9djlhysf6lcm41dq4pcw5jv6mdvb1mgxni7g3sgfv"; depends=[crayon httr RCurl xml2]; }; fledge = derive2 { name="fledge"; version="0.1.1"; sha256="1nq0180vjq7jmawd42r8w3hgrccs9k013yni0wkldkc73p6526gd"; depends=[cli desc enc gert purrr rematch2 rlang tibble usethis whoami withr]; }; + flevr = derive2 { name="flevr"; version="0.0.4"; sha256="1h1wnqd1fv6z4mfrchm5rv9x9s48vp67csf3a8gyj7gm3lppgnfm"; depends=[caret dplyr kernlab magrittr mvtnorm ranger rlang SuperLearner tibble]; }; flexCWM = derive2 { name="flexCWM"; version="1.92"; sha256="1fxwq12mki10ikf5lyh1pb58svfzs4llg68v4d9iznia8aa0grhq"; depends=[ContaminatedMixt mclust numDeriv statmod]; }; flexclust = derive2 { name="flexclust"; version="1.4-1"; sha256="13akk3w6a76jpws5v9108c3hdmb8i6gm0sc06lr2hqly0pgpfyfn"; depends=[class lattice modeltools]; }; flexdashboard = derive2 { name="flexdashboard"; version="0.6.2"; sha256="0zxyrfp1inv19palaba81pxlq0nz655hcliynvh995a58cvg6c5n"; depends=[bslib htmltools htmlwidgets jsonlite knitr rmarkdown sass scales shiny]; }; @@ -9867,26 +10051,27 @@ in with self; { flextable = derive2 { name="flextable"; version="0.9.4"; sha256="1dlsag1y3s7d5lp1dh2kxf1qax4r9xvxycpmxl64gkr50dk13bam"; depends=[data_table gdtools htmltools knitr officer ragg rlang rmarkdown uuid xml2]; }; flifo = derive2 { name="flifo"; version="0.1.5"; sha256="03x66l3ryrjvwbxxd0ncjrb5w9kc7fswmp5psb1cb7r87f395gm3"; depends=[bazar pryr]; }; flightplot = derive2 { name="flightplot"; version="0.1.0"; sha256="1276lsahr9kdsvp1ismm3b5syvhfr7ifizzd79f8w1h2rjblva8x"; depends=[dplyr geosphere ggplot2 ggrepel magrittr rlang sf tibble]; }; - flightsbr = derive2 { name="flightsbr"; version="0.3.0"; sha256="18csal1jd0998njvf6bwqjhapm5lzgb77zqh44p7cs6pgw4h7xpw"; depends=[data_table httr parzer pbapply rvest]; }; + flightsbr = derive2 { name="flightsbr"; version="0.4.0"; sha256="17i5v7v9ccp4wn9amzw0iv157q0x3nlx2qc8mr3npma4wshf7rvr"; depends=[data_table httr parzer pbapply rvest]; }; flimo = derive2 { name="flimo"; version="0.1.5"; sha256="00l0w9z1j2yy4sl1fly7lw4rrdwcwnb26va2d5vsvjldwcmsx5pd"; depends=[ggplot2 JuliaConnectoR]; }; flintyR = derive2 { name="flintyR"; version="0.1.0"; sha256="1md0p3i9lny5sn1jjh8ss6bw4w7q8ydi6kh5smjbbgbn86qlcvwy"; depends=[assertthat doParallel foreach Rcpp RcppArmadillo testthat]; }; flip = derive2 { name="flip"; version="2.5.0"; sha256="08x5hwxaxbgc745gblja7gcy0b5wbp7jf90lkha75zl5cc9iyksl"; depends=[cherry e1071 plyr someMTP]; }; flipbookr = derive2 { name="flipbookr"; version="0.1.0"; sha256="0ls51risk3qn5fagw31i2kibrxk7xk3845a1cccd83sc4c8ilgjx"; depends=[dplyr glue knitr magrittr purrr rmarkdown stringi stringr tibble tidyr]; }; flipdownWidgets = derive2 { name="flipdownWidgets"; version="0.1.0"; sha256="1qlpav9s51w9nkszfkad87cfbc7jq4n0kmgis8hrin093w0whp7a"; depends=[htmlwidgets]; }; flipdownr = derive2 { name="flipdownr"; version="0.1.1"; sha256="18z6y9anwg264gwqpxvm8mmv7xvc4m323mkg9db424vd1ji560f3"; depends=[checkmate glue htmltools jsonlite]; }; - flippant = derive2 { name="flippant"; version="1.5.3"; sha256="1d1rrmnhbbixkwscw2gqk6pm8jvvgikyrd4hzrpif4qd5xj833dj"; depends=[assertive_base assertive_files assertive_numbers assertive_properties assertive_strings assertive_types data_table ggplot2 magrittr minpack_lm plyr pracma stringi withr]; }; + flippant = derive2 { name="flippant"; version="1.5.4"; sha256="189c7mm56rhwh4d1lrfbp9gn4l4vhi6i0cn9zif6s5c7yryvf3l9"; depends=[assertive_base assertive_files assertive_numbers data_table ggplot2 magrittr minpack_lm plyr pracma stringi withr]; }; flipr = derive2 { name="flipr"; version="0.3.3"; sha256="188kdgk390rh8wpfsvqbwpwa3dmwzlzv8sdgvfxl9f0ddbxasghb"; depends=[cli dials ggplot2 magrittr optimParallel pbapply purrr R6 Rcpp rgenoud rlang tibble usethis viridisLite withr]; }; flipscores = derive2 { name="flipscores"; version="1.2.0"; sha256="17dmx7r29ngwz690x7p447pczh903swzpwmk5abvzjsqvfgikbi8"; depends=[MASS]; }; - float = derive2 { name="float"; version="0.3-1"; sha256="0fzb9warfnb7h1krrf2hrxjp3lmpff7sln0r2718iqlhwam9v1zm"; depends=[]; }; + float = derive2 { name="float"; version="0.3-2"; sha256="149affr0swb1vqnhkzm5lr4knfsh78ygswy123j1qj823zbhsfi3"; depends=[]; }; flobr = derive2 { name="flobr"; version="0.2.3"; sha256="0if7g3zz669digy0z0n8kjkz9rq9dnyq2kz9n2zvddssl5q4nnc9"; depends=[blob chk lifecycle]; }; flock = derive2 { name="flock"; version="0.7"; sha256="1zg93p74icj4bhxnmnssj2xp6vw4yaksyavq03497v33xfpdxss7"; depends=[Rcpp]; }; flood = derive2 { name="flood"; version="0.1.1"; sha256="0nlmjh2l7dij1aqd70hhj0m550knlin3am14azqkx4pacs1kir3p"; depends=[copula evd magrittr TLMoments]; }; flora = derive2 { name="flora"; version="0.3.4"; sha256="17drlfvvrndal4cf5nw20xb9viybagvb4vll1kxdrhvsvfz5yap6"; depends=[dplyr httr jsonlite stringdist]; }; + florabr = derive2 { name="florabr"; version="1.0.1"; sha256="1mc1mg7s860h4ig40lz3zpr299bq14xz10wi2pviwbbb2dpnndzr"; depends=[data_table httr terra XML]; }; flow = derive2 { name="flow"; version="0.2.0"; sha256="171csdpp445lxhh7ph59h7xxqxdpjlkf35nrjy74282m9xmqdlz9"; depends=[here htmlwidgets lifecycle nomnoml rstudioapi styler webshot]; }; flowTraceR = derive2 { name="flowTraceR"; version="0.1.0"; sha256="1nl7yfzsh3bhqdildb77wmnapich4xn6y2j8rlmrb4w7mq9jnhba"; depends=[comprehenr dplyr ggplot2 magrittr stringr tibble tidyr]; }; flowml = derive2 { name="flowml"; version="0.1.2"; sha256="1fssgx06fz4bvprghl9kf8x80jg3g8w04hhdgvml86w4vhi1vz0v"; depends=[ABCanalysis caret data_table dplyr fastshap furrr future magrittr optparse purrr R6 readr rjson rlang rsample stringr tibble tidyr vip]; }; flowr = derive2 { name="flowr"; version="0.9.11"; sha256="1cbbfrvgzqclvbhy20vjwgxbvnn3ljh0k1k54jf2si10bfw3zzi5"; depends=[diagram params readr whisker]; }; - flps = derive2 { name="flps"; version="0.1.0"; sha256="0kcxc425xg4y44j2rd1h6w5wf7dq11j9vvlf0jcs3irbr49q7y3g"; depends=[ggplot2 MASS mirt mvtnorm Rcpp rstan]; }; + flps = derive2 { name="flps"; version="1.0.0"; sha256="0l4maf51psfmf3wq86r2zpvcm29car4z7jn7xh2mp8kllb7ii59d"; depends=[ggplot2 glue MASS mirt mvtnorm Rcpp rstan]; }; flsa = derive2 { name="flsa"; version="1.5.3"; sha256="0m0zx0nizg4mrs2gg2sbxjlixx1rcmrj7xg869ia3gg36x1a28d9"; depends=[]; }; fluoSurv = derive2 { name="fluoSurv"; version="1.0.0"; sha256="1dv4lf7k28bih2qqkpy15f7d14ibxk48p3z6sj3dj5yvh25mhv81"; depends=[]; }; fluspect = derive2 { name="fluspect"; version="1.0.0"; sha256="0j80wx00s8ljqg1qaqw66rj7kxhhk438hb0syv0lr9vld03cxy2w"; depends=[pracma]; }; @@ -9899,14 +10084,14 @@ in with self; { fmdates = derive2 { name="fmdates"; version="0.1.4"; sha256="1bbcwkh65nf2gak9b81zgg32c5ihwhmai3nc43ayf6ivhqsxw8x0"; depends=[assertthat lubridate]; }; fmeffects = derive2 { name="fmeffects"; version="0.1.1"; sha256="1jqjlrqc9an8f9ij51xmi7fb6mljwsgchihnb3d63bzwc9a0iphh"; depends=[checkmate cowplot data_table ggparty ggplot2 partykit R6 testthat]; }; fmerPack = derive2 { name="fmerPack"; version="0.0-1"; sha256="0p9jfgkzs97r6ya1x8ax7bza17b03grqxa22ja13s12vj0cdkv78"; depends=[abind flexmix glmnet MASS Rcpp RcppArmadillo]; }; - fmesher = derive2 { name="fmesher"; version="0.1.3"; sha256="0kmsahgjqbsshw27mgcjx4crli8d67kkagzyc7xap95ivlcdqpgd"; depends=[dplyr lifecycle Matrix Rcpp rlang sf sp tibble withr]; }; + fmesher = derive2 { name="fmesher"; version="0.1.5"; sha256="0pzqj6br5cqzqmrdlmk3d0j025519hlabgmgh02inzg8i25azxzn"; depends=[dplyr lifecycle Matrix Rcpp rlang sf sp tibble withr]; }; fmf = derive2 { name="fmf"; version="1.1.1"; sha256="0b26040a39jys1z3h9mq9k7rjr0iyiialq442ir8vgzvmrh383cs"; depends=[C50 caret dplyr e1071 factoextra FactoMineR ggplot2 kernlab Rcpp RcppArmadillo solitude]; }; fmpcloudr = derive2 { name="fmpcloudr"; version="0.1.5"; sha256="07fvmrprv0pka1wgp5ygcvv86jvn3h30xxkx44ssin15hfmank69"; depends=[dplyr httr jsonlite lubridate magrittr tidyr]; }; fmri = derive2 { name="fmri"; version="1.9.12"; sha256="1cv5mxcdpyf05n5pcjdawl59j7f4k40386r4m38qf15vcy45zdfq"; depends=[aws metafor nlme oro_nifti]; }; fmriqa = derive2 { name="fmriqa"; version="0.3.0"; sha256="1z09nf1c305a78c129jvs21b9z91wyhazz41wrn4bimmhfhx7szv"; depends=[ggplot2 gridExtra imager optparse pracma RcppEigen reshape2 RNifti tidyr viridisLite]; }; fmsb = derive2 { name="fmsb"; version="0.7.5"; sha256="082qj08kzyzwvjacwq0sl3xxdx6iz5hgx6q24jv1mnvx7z5xn5ry"; depends=[]; }; fmt = derive2 { name="fmt"; version="2.0"; sha256="04df84979a8vaacfhxsb58zci1mmh113ir7qnkniv5qnyvdabacm"; depends=[limma]; }; - fmtr = derive2 { name="fmtr"; version="1.6.0"; sha256="1294qzarkj5v4kcjw4px763c34gywgm1q4v7py8sh7ik2c2sg86g"; depends=[common crayon Rcpp tibble]; }; + fmtr = derive2 { name="fmtr"; version="1.6.3"; sha256="0xgyg9kgak6w3p8lp0ccnkp90bnh516py0sn07nxh6pjbv2rkng0"; depends=[common crayon Rcpp tibble]; }; fnets = derive2 { name="fnets"; version="0.1.5"; sha256="0fybpicc95ql89j09s48bnfsbh3spw26vh1m2xd2y5qv4mj1ff8q"; depends=[doParallel fields foreach igraph lpSolve MASS RColorBrewer]; }; focusedMDS = derive2 { name="focusedMDS"; version="1.3.3"; sha256="18s86dbbpyajscqr9frprf2vp1zif7vh4lw5m0cjskfc6gmsdp2p"; depends=[htmlwidgets]; }; foghorn = derive2 { name="foghorn"; version="1.5.1"; sha256="0fbr38hxl2qwr1pbvbwwnkr9dk8saq13w0ld6waky70g7k7va8m4"; depends=[clisymbols crayon curl httr2 rlang rvest tibble xml2]; }; @@ -9920,7 +10105,7 @@ in with self; { fontquiver = derive2 { name="fontquiver"; version="0.2.1"; sha256="0qv3i9hch7cygl9983s3w68wfh5qvym2jkm52pp06p6mq8a1i1wm"; depends=[fontBitstreamVera fontLiberation]; }; foodingraph = derive2 { name="foodingraph"; version="0.1.0"; sha256="0v40yk7lx0zxvpd3vz48h5gzx8ds8v3l12i2r7v9safgfvip6fvn"; depends=[cowplot dplyr ggplot2 ggraph igraph labeling magrittr minerva rlang stringr tibble tidyr viridis]; }; foodquotient = derive2 { name="foodquotient"; version="0.1.1"; sha256="11api7fh3v7ym4k22xf1clbgl0wxqmklr9irjw4y3bn57vmsy3i6"; depends=[]; }; - foodwebWrapper = derive2 { name="foodwebWrapper"; version="1.0"; sha256="1dwlzvxk80vl97b24i3gjcxsbir2kxvblbhsihf2wysxyfmw1abh"; depends=[dplyr magrittr mvbutils R2HTML textshaping tibble tidyverse]; }; + foodwebWrapper = derive2 { name="foodwebWrapper"; version="1.1.0"; sha256="1gh1xs60bnm2g1d7dg67q683bzkh5ih1gz3psvv3dmygm5f1j1bc"; depends=[dplyr magrittr mvbutils R2HTML stringr textshaping tibble tidyverse]; }; foolbox = derive2 { name="foolbox"; version="0.1.1"; sha256="06lcr5v6bcqqxskrwdm16b46zq4h67x8bwqya88jxs5bgi5w0hj3"; depends=[magrittr rlang]; }; footBayes = derive2 { name="footBayes"; version="0.2.0"; sha256="0gp784ad34ygnn06r4p1y3nqdx372ypgcgm94fcm1lqslsn7akj0"; depends=[arm bayesplot dplyr extraDistr ggplot2 magrittr matrixStats metRology numDeriv reshape2 rstan tidyverse]; }; footballpenaltiesBL = derive2 { name="footballpenaltiesBL"; version="1.0.0"; sha256="1my67157frp4pxl84sb6dnb7rzp99g59mp9iwwv1s6wc391zfbsp"; depends=[]; }; @@ -9930,6 +10115,7 @@ in with self; { forams = derive2 { name="forams"; version="2.0-6"; sha256="1y8r64ckx7swx4rlmdsjp4k8ic5jmivwk4vbadx4gpp4brd2zk12"; depends=[vegan]; }; forcats = derive2 { name="forcats"; version="1.0.0"; sha256="0ki5c84n7xm4iw4aj629l51hm84f6p5wa3bw88d1wbnr15wibfy5"; depends=[cli glue lifecycle magrittr rlang tibble]; }; forceR = derive2 { name="forceR"; version="1.0.20"; sha256="1fq1zp0h4044yx5p6yj03cyzwvsrijchcnjz8z91cnfagkb5b8s0"; depends=[dplyr filesstrings magrittr purrr readr roll stringr]; }; + forceplate = derive2 { name="forceplate"; version="1.0-0"; sha256="01h8fmxnxzgc20jw3mb4kmf5ghrlj604in0kn6y97h84qwbyair4"; depends=[data_table signal stringi]; }; foreSIGHT = derive2 { name="foreSIGHT"; version="1.2.0"; sha256="1nw93xs10qfj489i9xlamjrk8rf73b7511gdsg49vvbgjp4945mr"; depends=[cmaes cowplot dfoptim directlabels fields GA ggplot2 jsonlite lattice Matrix moments mvtnorm progress rcorpora Rcpp RGN rlang scales SoilHyP viridisLite]; }; foreach = derive2 { name="foreach"; version="1.5.2"; sha256="1r5gdf9fp3rprvrhf0gzl9qmmqhgdn5gscpm5hk8zxpraf3qscsn"; depends=[codetools iterators]; }; forecTheta = derive2 { name="forecTheta"; version="2.6.2"; sha256="0xw5xl6famx0wy68a32f8vgqk02lkymvxq082yp16giidvzvqjwd"; depends=[forecast tseries]; }; @@ -9939,7 +10125,7 @@ in with self; { forecastML = derive2 { name="forecastML"; version="0.9.0"; sha256="01lqbmdmd6sk5xka19i9d466bzihxgp652v0kr13r82b591f67vq"; depends=[data_table dplyr dtplyr future_apply ggplot2 lubridate magrittr purrr rlang tibble tidyr]; }; forecastSNSTS = derive2 { name="forecastSNSTS"; version="1.3-0"; sha256="0p47x7ic2ib7znqbp8br4b2ci75f5w8x413z9g4n30m002p7irp1"; depends=[Rcpp]; }; forecasteR = derive2 { name="forecasteR"; version="2.0.2"; sha256="0pwgkkzyfzjjp9qrx4xx3b68617a18i3an3gcpprkg4mwpsvcj0x"; depends=[colourpicker config DT echarts4r forecast golem htmltools htmlwidgets keras lubridate rlang shiny shinyAce shinycustomloader shinydashboard shinydashboardPlus shinyjs stringr zoo]; }; - foreign = derive2 { name="foreign"; version="0.8-85"; sha256="1azca97fhwb1pzgrjw2xscfh2k7bfryp6wjsdcx2y4h7305d4ych"; depends=[]; }; + foreign = derive2 { name="foreign"; version="0.8-86"; sha256="1qf3x1vacc4sdcmw4mbh0251ii4xd8z1xmmd9isak75j100i4ad7"; depends=[]; }; forensIT = derive2 { name="forensIT"; version="1.0.0"; sha256="0zbkkdm3wzzqsg7m6854lisskql0v5k9sg1ly1z479w5iqknh7bl"; depends=[doParallel dplyr fbnet foreach forrel ggplot2 gtools hrbrthemes iterators magrittr mispitools paramlink pedprobr pedtools reshape2 tidyr]; }; forestControl = derive2 { name="forestControl"; version="0.2.2"; sha256="0g81ml12xhq2a868vlpsybpsqz7p4hn9jnxh3dvq6g4k1hc1292x"; depends=[dplyr magrittr purrr Rcpp tibble]; }; forestError = derive2 { name="forestError"; version="1.1.0"; sha256="1dk19sgx760ph464cya4gxb1i3rpnydnhrbqyb25jja0dryjapcm"; depends=[data_table purrr]; }; @@ -9949,26 +10135,26 @@ in with self; { forestecology = derive2 { name="forestecology"; version="0.2.0"; sha256="0pvh50sdiscgkshlmyngz7pkmpaz03c8x3gfjp5ir52f8710ngb7"; depends=[blockCV dplyr forcats ggplot2 ggridges glue magrittr mvnfast patchwork purrr rlang sf sfheaders snakecase stringr tibble tidyr yardstick]; }; forestinventory = derive2 { name="forestinventory"; version="1.0.0"; sha256="1v5gyx8i64zn1cinwvm86syq26vhfzw2maaiymy32fphzybwxivf"; depends=[ggplot2 plyr tidyr]; }; forestly = derive2 { name="forestly"; version="0.1.0"; sha256="1pbq60agq62aiqgg48r92zpk89y74x80hwidqivjrmjkpjx92sgj"; depends=[brew crosstalk glue htmltools metalite metalite_ae reactable reactR rlang]; }; - forestmangr = derive2 { name="forestmangr"; version="0.9.5"; sha256="1diywnrvzyvpi7ygqmb26gii6ac741c2v3zc7pk6i0y09j89pgrq"; depends=[broom car dplyr FinCal ggdendro ggplot2 ggpmisc ggthemes gridExtra magrittr miniUI minpack_lm plyr purrr rlang scales shiny systemfit tibble tidyr]; }; + forestmangr = derive2 { name="forestmangr"; version="0.9.6"; sha256="0l8av1vg8dyrb15m08gby13qfalwcfizfn3jc2avvga8inyag0c5"; depends=[broom car dplyr FinCal ggdendro ggplot2 ggpmisc ggthemes gridExtra magrittr miniUI minpack_lm plyr purrr rlang scales shiny systemfit tibble tidyr]; }; forestmodel = derive2 { name="forestmodel"; version="0.6.2"; sha256="0pl9r8j2qd00b9kl585b4k54kic5fvzc56i8cn3hm5yp2hrrwyws"; depends=[broom dplyr ggplot2 rlang tibble]; }; forestplot = derive2 { name="forestplot"; version="3.1.3"; sha256="0jbmhgbf167xi0lxqinf6m4gmh10r582bify1i731k9ywcc7psqk"; depends=[abind checkmate]; }; forestploter = derive2 { name="forestploter"; version="1.1.1"; sha256="0l19pw5an8d2zn32r64b8a3b95krq9r083ziry5973wdm0nya2pw"; depends=[gridExtra gtable]; }; forestr = derive2 { name="forestr"; version="2.0.2"; sha256="1kz8f3x2dmsprj2r23gz61fpwg7n14nbjxr16x4cpixvnk427p94"; depends=[dplyr ggplot2 moments plyr tibble tidyr viridis]; }; - forestry = derive2 { name="forestry"; version="0.1.0"; sha256="0q7m0mrig8z2b2z2fng58qlqa6g58xlhfzchil2dvjh6xf3qvsh8"; depends=[data_tree]; }; + forestry = derive2 { name="forestry"; version="0.1.1"; sha256="0bg41sja0aq8fdhxbla676bq1m1xjk2jaybcl0qfj2kc33pdivkx"; depends=[data_tree]; }; foretell = derive2 { name="foretell"; version="0.2.0"; sha256="18vi438n480gizfhnciw67gngvbjnmky19186b1wy75av7fgc1gp"; depends=[nloptr]; }; forge = derive2 { name="forge"; version="0.2.0"; sha256="0pjfzsc35agkh0zfw2czwajkbsyn6liys5irl5bhz5r1vim3jmwa"; depends=[magrittr rlang]; }; formatBibtex = derive2 { name="formatBibtex"; version="0.1.0"; sha256="0abqvjmpnlrxzlmqcixbds10q7ssg7x2wdx1qqpy1ix2snd23s7w"; depends=[]; }; formatR = derive2 { name="formatR"; version="1.14"; sha256="0k271w4bhlj7r9igkiyfw7d7bg30s2mn4sr4alb8f9w57wnapfjf"; depends=[]; }; formatdown = derive2 { name="formatdown"; version="0.1.2"; sha256="1k293djggyrdbd20r1avmqxsfimfglzcadq1lg56a79bj8mad636"; depends=[checkmate data_table units wrapr]; }; formattable = derive2 { name="formattable"; version="0.2.1"; sha256="1vdxi0xmg019qyzjrp8bkjxciz245jcxsrkhfzd44ynqcwi4s3ag"; depends=[htmltools htmlwidgets knitr rmarkdown]; }; - formatters = derive2 { name="formatters"; version="0.5.2"; sha256="1r6idapw5jz3g81pz4ffl7ifij94mgm0wl3ijg1gwxk8h2fs0w6b"; depends=[checkmate htmltools]; }; - formods = derive2 { name="formods"; version="0.1.1"; sha256="0xkb54ww6zksgyfd9cbjws8fg0vsg2pvlnmqp4qk2inkjqi9myv8"; depends=[cli digest dplyr ggforce ggplot2 onbrand readr readxl rhandsontable rlang shiny shinyAce shinyWidgets stringr writexl yaml zip]; }; + formatters = derive2 { name="formatters"; version="0.5.5"; sha256="0ay753n018v3idn3q07i8jv68322ia3x5smpz8gkfv7k892y8a4f"; depends=[checkmate htmltools]; }; + formods = derive2 { name="formods"; version="0.1.3"; sha256="1zvriii32s17mr1nyckbqr63g6rf90x2r6fxsbk9sa8imci272iq"; depends=[cli digest dplyr ggforce ggplot2 onbrand readr readxl rhandsontable rlang shiny shinyAce shinyWidgets stringr writexl yaml zip]; }; formula_tools = derive2 { name="formula.tools"; version="1.7.1"; sha256="15d3ikfmsh9zszfgfkrxb3jkipl41inm7n6bhs73kwlnklnygq2g"; depends=[operator_tools]; }; formulaic = derive2 { name="formulaic"; version="0.0.8"; sha256="1nx6a73vw2hjbnqaw8x17ghhljd6z2avxv4arz3c3785pyayhg9k"; depends=[data_table]; }; formulops = derive2 { name="formulops"; version="0.5.0"; sha256="1mkpv5xjykrhgknq0gh4yg2a3j4xb8q2d6dh0wv8zd9h59hvrzda"; depends=[]; }; forplo = derive2 { name="forplo"; version="0.2.5"; sha256="066hpd5jfs8nfd5fbxh049apd93pz8ibzr2kqlssx4c9fziwbg40"; depends=[]; }; - forrel = derive2 { name="forrel"; version="1.6.0"; sha256="0spak2r0i1vk29ppnq991ibck04kl4pygdpwma7yf894hmp07xks"; depends=[glue pedmut pedprobr pedtools ribd]; }; - forsearch = derive2 { name="forsearch"; version="4.1.0"; sha256="10r48all8db7s5v4q5xmcmhwz46q00hbvp2lgf9g6jsfqnplq5rb"; depends=[Cairo formula_tools ggplot2 Hmisc nlme survival tibble]; }; + forrel = derive2 { name="forrel"; version="1.6.1"; sha256="1xq94rn86nclh0935jqxvlbqjx5qi0mdj9i6b9sb2qbzjjnm1gcl"; depends=[glue pedFamilias pedprobr pedtools ribd]; }; + forsearch = derive2 { name="forsearch"; version="4.2.0"; sha256="06pbizb69hrjk32ivlkkl95c54fc4gdyyacm96lkfq4nax79zfhy"; depends=[Cairo formula_tools ggplot2 Hmisc nlme survival tibble]; }; forstringr = derive2 { name="forstringr"; version="1.0.0"; sha256="0x3nrvazzapvx8nfjyp7a0d1n2qs3mpbnfqj07rv4kxyw47p93iy"; depends=[dplyr glue rlang stringr tidyselect]; }; fortunes = derive2 { name="fortunes"; version="1.5-4"; sha256="109ly9kpfn6hy294ava8795wy5z9l1bnl98hhhv8kn9naf4camdg"; depends=[]; }; forward = derive2 { name="forward"; version="1.0.6"; sha256="12yk2l9cjmlr9089a8qw8arpdq997c9d9nx5xsy2x76ik65r6i3l"; depends=[MASS]; }; @@ -9978,10 +10164,10 @@ in with self; { foto = derive2 { name="foto"; version="1.1"; sha256="0z1r903i4hc2m7kkph8l1ncjvx20dv800n7j6zcg8vdsi3qycw13"; depends=[terra]; }; foundry = derive2 { name="foundry"; version="0.13.0"; sha256="06mmqiaakha1xw2l5zib5nmwijjv4rjbpsx52ck7xihm6w192lss"; depends=[arrow httr jsonlite R6 yaml]; }; fourPNO = derive2 { name="fourPNO"; version="1.1.0"; sha256="0a0z2403kdh3fjb0ypjjk3m6fg77bg6m7hwb5jhlymcy2rwkay7w"; depends=[Rcpp RcppArmadillo]; }; - fourierin = derive2 { name="fourierin"; version="0.2.4"; sha256="140721p4h5mjr7r25ckv8wfhbj88xw6v47b613r5bpalg8gw650l"; depends=[Rcpp RcppArmadillo]; }; + fourierin = derive2 { name="fourierin"; version="0.2.5"; sha256="1rl1h433m1kw1jnwb1fqq9vc1qixyz6zd7jzmm4h51xf8mz8r463"; depends=[Rcpp RcppArmadillo]; }; fpCompare = derive2 { name="fpCompare"; version="0.2.4"; sha256="0w15ylisx7md3nyclqbd13n23f2r36875pdiskav4rry28m892bi"; depends=[]; }; fpa = derive2 { name="fpa"; version="1.0"; sha256="0kgpl9qq0l10h0vdd2f8vnir0kdylh1jvvv5z4d9ygj1pl9qywhk"; depends=[fields reshape]; }; - fpc = derive2 { name="fpc"; version="2.2-10"; sha256="1lj7j74yx747iic1hcngzbym0sqxppja8bxw64m0j6na5s7m9d4r"; depends=[class cluster diptest flexmix kernlab MASS mclust prabclus robustbase]; }; + fpc = derive2 { name="fpc"; version="2.2-11"; sha256="06j1dzlf96qcaiqg8m5iah9rmwdppky04xjhs8k4rh0k12wr0mc2"; depends=[class cluster diptest flexmix kernlab MASS mclust prabclus robustbase]; }; fpcb = derive2 { name="fpcb"; version="0.1.0"; sha256="086060z6r79m527bb9ah6yk2z15xq8x27gyvbz23xbm6mhrxsa1y"; depends=[FNN]; }; fpeek = derive2 { name="fpeek"; version="0.1.2"; sha256="0kv46g21ndxchg3q8ynq7hjjkh6i2zlc21axn5y1jjzigrw047ii"; depends=[Rcpp]; }; fpest = derive2 { name="fpest"; version="0.1.1"; sha256="013r8295spm02j558aqvnrnbkg2g73gl5vi4lqzngbw8yr8qlkri"; depends=[]; }; @@ -9993,10 +10179,10 @@ in with self; { fpp = derive2 { name="fpp"; version="0.5"; sha256="1jqnx6bgpvnbbj2fa2b6m6aj8jd5cb9kz877r8kp7a5qj62xv1ww"; depends=[expsmooth fma forecast lmtest tseries]; }; fpp2 = derive2 { name="fpp2"; version="2.5"; sha256="1ml4jf7r1q555k7qnr3fky5axl0x66h3g1m61nmdrckgf6idkn0f"; depends=[cli crayon expsmooth fma forecast ggplot2 magrittr purrr rstudioapi]; }; fpp3 = derive2 { name="fpp3"; version="0.5"; sha256="1yg2wv1mdqrmpxbz9kdsxw84q5hg12rsmz1k3i4dq1nymqbkkfq2"; depends=[cli crayon dplyr fable fabletools feasts ggplot2 lubridate magrittr purrr rstudioapi tibble tidyr tsibble tsibbledata]; }; - fptdApprox = derive2 { name="fptdApprox"; version="2.4"; sha256="0ql52rx5wc7h5vxl567i065lmj4ygai3xpjwp7qrndl16x1j4k9l"; depends=[]; }; + fptdApprox = derive2 { name="fptdApprox"; version="2.5"; sha256="013wspkb7n3lcn5z1pfsqwfgzm0rjfswski9550indy2vv4n4qni"; depends=[]; }; fqacalc = derive2 { name="fqacalc"; version="1.1.0"; sha256="1n4vlz75d2jsl3chsarmgf5cg7zj06gxgn1mj79d85z86pn4jip3"; depends=[dplyr fqadata magrittr rlang]; }; fqadata = derive2 { name="fqadata"; version="1.1.0"; sha256="1nxqq33j396wa12n3qwfrsh9l2g2pn2f9d25vfzihh3xnsbk0cv5"; depends=[]; }; - fqar = derive2 { name="fqar"; version="0.4.3"; sha256="18llpbdjwscnbx9n94nc5x42mr3vsbf35s3br7w30s8mf48c3s3y"; depends=[dplyr ggplot2 httr jsonlite memoise rlang tidyr tidyselect]; }; + fr = derive2 { name="fr"; version="0.5.1"; sha256="0kj7qjv6jdrp8wm7ynpi4mjm4sx9b2aqnhqb0pn1xnpbsj9x7557"; depends=[cli dplyr purrr rlang S7 tibble tidyselect vroom yaml]; }; frab = derive2 { name="frab"; version="0.0-3"; sha256="08nlhshg3bz8b830vl877xyyjgngxk7sf5vp5d0np3bfhrylh0wv"; depends=[disordR mathjaxr Rcpp]; }; fracdiff = derive2 { name="fracdiff"; version="1.5-2"; sha256="0dzl011c92skf7hmx1zvdwsrashmfkxy9p2wig35nzr8609qhpxc"; depends=[]; }; fracdist = derive2 { name="fracdist"; version="0.1.1"; sha256="0ssg8h1mvkzpwq4dn9fdxjg1vzhcv6606wsy0xrm1wz9p6s5rx74"; depends=[]; }; @@ -10011,13 +10197,14 @@ in with self; { frailtyHL = derive2 { name="frailtyHL"; version="2.3"; sha256="115iv1d2c9mvviick8b24bn6kdbsvnf21nvfjm9a8dk0x07hrv5g"; depends=[cmprsk Matrix survival]; }; frailtyMMpen = derive2 { name="frailtyMMpen"; version="1.2.1"; sha256="03d3mlbwvpqjgxgw4cqy2502lx4gh8fvf7sbcq06w8yjljffn0a0"; depends=[mgcv numDeriv Rcpp RcppGSL survival]; }; frailtySurv = derive2 { name="frailtySurv"; version="1.3.8"; sha256="1k1pxn47gglkcjzix3h1vn9z631ms6icgv5df6pb90008qmilck7"; depends=[ggplot2 nleqslv numDeriv Rcpp reshape2 survival]; }; + frailtypack = derive2 { name="frailtypack"; version="3.5.1"; sha256="1q6y1g3a844kflwf6ppl7x0zlwnks8zq98bzx03vlww6n6cicrgz"; depends=[boot doBy MASS nlme rootSolve shiny statmod survC1 survival]; }; frair = derive2 { name="frair"; version="0.5.100"; sha256="1j557dqvc5xiz7xbl4h7vp55pc3hly8ci01qy36p02vlxhzf4hj3"; depends=[bbmle boot lamW]; }; framecleaner = derive2 { name="framecleaner"; version="0.2.0"; sha256="1lclxjds59i1mhc8mzmgy5f7yhqwv72ylidpfvzjgslf45sjk5lp"; depends=[bit64 dplyr fastDummies forcats fs janitor lubridate magrittr purrr readr rio rlang rlist rstudioapi stringr tibble tidyselect vroom]; }; franc = derive2 { name="franc"; version="1.1.4"; sha256="0l41m53li2pvcac7m5y5gkvmw0qy5k3v0m2ljda9gdaasg5029xr"; depends=[jsonlite]; }; frapplot = derive2 { name="frapplot"; version="0.1.3"; sha256="12924szk2p0582nv97gi8pxrbv41zqpjryc6jqgg4llhp7ydz7xf"; depends=[]; }; frbinom = derive2 { name="frbinom"; version="1.0.0"; sha256="1494fkffz0b5sggq0d3f4nzgaqf58sr9v26rzmmkabqmr983q1zp"; depends=[]; }; frbs = derive2 { name="frbs"; version="3.2-0"; sha256="0biv6j31qi0f4i063ygmbp6v6ws1nxijn5kyhg5sz1rnbr0msl28"; depends=[]; }; - frechet = derive2 { name="frechet"; version="0.2.0"; sha256="1006mgy9avwkwy0666maac59xp4j27wq5yy3pwc3h1r05myxw379"; depends=[corrplot fdadensity fdapace Matrix osqp pracma]; }; + frechet = derive2 { name="frechet"; version="0.3.0"; sha256="0lxzhkimyhnisbvfgv8l9vv4pzjj6igcy8fyx25is43g2cz35ymq"; depends=[boot corrplot e1071 fdadensity fdapace Matrix osqp pracma quadprog trust]; }; fredr = derive2 { name="fredr"; version="2.1.0"; sha256="0073qh0drf1p38hc84m54n35hyza90m8zn48ihx3alxkiq1m8ijp"; depends=[httr jsonlite rlang tibble]; }; free = derive2 { name="free"; version="1.0.1"; sha256="0r9vd1d4pi19mnvdchx95axp0hiqs8lpgp0fn40dm89h5fd6zyb0"; depends=[Rcpp RcppArmadillo]; }; freealg = derive2 { name="freealg"; version="1.1-1"; sha256="0jx9r40hql8fkpjr005snavj8fw5ykqa4ya7cy59jhxr31byma3j"; depends=[disordR mathjaxr partitions Rcpp]; }; @@ -10043,19 +10230,20 @@ in with self; { freshr = derive2 { name="freshr"; version="1.0.2"; sha256="1vzwdy5cssk9r3fvw0w1pxkn203whzycmvz9fdm08lkd538zwdnj"; depends=[]; }; frictionless = derive2 { name="frictionless"; version="1.0.2"; sha256="0821j53jnkak4nfzqyqrm07qz79laxvwsx78bbn4y1765awyxvaw"; depends=[assertthat dplyr glue httr jsonlite purrr readr yaml]; }; friends = derive2 { name="friends"; version="0.1.0"; sha256="164p9g07vq3xs2lgg250yvzca4b0mp81pqbnjfdkzcqh5hmahsan"; depends=[tibble]; }; - fritools = derive2 { name="fritools"; version="4.1.1"; sha256="1cbh3m0v8vganmsdi2q6ggrfs3rw4wpi4zzsn1vhjkq1dcrb7bsz"; depends=[]; }; + fritools = derive2 { name="fritools"; version="4.2.0"; sha256="0h0nx5jvp3mnddzl5if0dwdrlhikd70gx09r2zm264y3mnddq8y5"; depends=[]; }; fritools2 = derive2 { name="fritools2"; version="4.1.0"; sha256="1gbji1nq1jgw2h6ll4qzxv6hwvlp3zbw1n9ljnjw4zmz031c3zjd"; depends=[]; }; fromo = derive2 { name="fromo"; version="0.2.1"; sha256="0srq13j0xqbyrmm8n93b5qwc25nz921z45yf467d7gfhxsbgy3hm"; depends=[Rcpp]; }; frontier = derive2 { name="frontier"; version="1.1-8"; sha256="1qhasynm23yihmhb4d7w72msq2z1xf4xnzrkah3z8jv11yxhg1i2"; depends=[Formula lmtest micEcon miscTools moments plm]; }; - frontiles = derive2 { name="frontiles"; version="1.3"; sha256="0m4hw4bybahwmpj14ypc5f078j6zpxi5c04ys9qnhks6x4g2a646"; depends=[colorspace rgl]; }; + frontiles = derive2 { name="frontiles"; version="1.3.1"; sha256="0l9hyd5rmam5xqa717vcr4cj5fxdfxrjgfdfc6q04hnqzw09cg05"; depends=[colorspace rgl]; }; frostr = derive2 { name="frostr"; version="0.2.0"; sha256="1bsgdskdbyryq7jvhnb4z4xb1m5vadqv00qjlkgp41xh71wp2brs"; depends=[httr jsonlite tibble tidyr]; }; + froth = derive2 { name="froth"; version="1.0.0"; sha256="1wi4xphqrwrhbg03w3kp92d9d6z7pyywmb8228mqhzd0gs9anyz8"; depends=[]; }; frscore = derive2 { name="frscore"; version="0.3.1"; sha256="1nfl6jzghr3zg63l3vzkpx8fpr2mz60nxikmssngbcbv6qfyi8i8"; depends=[cna dplyr lifecycle magrittr Rfast rlang]; }; fruclimadapt = derive2 { name="fruclimadapt"; version="0.4.5"; sha256="0v9yh3q7sf0q8lwj89hr50f3s6m14c0azs0rbmykxmj18k376fwg"; depends=[data_table dplyr lubridate magrittr zoo]; }; fs = derive2 { name="fs"; version="1.6.3"; sha256="0wgrq0vgaf9czjyzlxdmpy7swxcyd4mryks0gr5xk96pa0g0d0ps"; depends=[]; }; fsMTS = derive2 { name="fsMTS"; version="0.1.7"; sha256="18sikbvl6cwsgr5vqxnx3lmpp2mlx22ca16zxddj87z7jfr1fhgn"; depends=[freqdom glasso lars mpmi randomForestSRC]; }; fsbrain = derive2 { name="fsbrain"; version="0.5.4"; sha256="0cy7f2k58lvsmp2qd24qqavq7d2bnf0r7s7j75nx9z1mp7x4cm1q"; depends=[data_table fields freesurferformats magick pkgfilecache reshape rgl squash viridis]; }; fscaret = derive2 { name="fscaret"; version="0.9.4.4"; sha256="18fhyfl3f8syyc3g937qx87dmwbv7dray6b97p1s6lnssiv61gsw"; depends=[caret gsubfn hmeasure]; }; - fsdaR = derive2 { name="fsdaR"; version="0.8-1"; sha256="1j4q92lkmijap1hwv8grdhzaqr9c739894vh9l9a7vvllqa5n6nq"; depends=[ggplot2 rJava]; }; + fsdaR = derive2 { name="fsdaR"; version="0.9-0"; sha256="1jg8m5rdafzl9xw27knrnhyyq1y7ss4v0azm1q3rgqrxvfnqn7bg"; depends=[ggplot2 rJava]; }; fsemipar = derive2 { name="fsemipar"; version="1.0"; sha256="0xvhnb5fw0q5h1d9fkhm4i9ig476gc6gvp6qzvxnmrwzdpjmhdk2"; depends=[DiceKriging grpreg gtools]; }; fsia = derive2 { name="fsia"; version="1.1.1"; sha256="0id7cnswrqylgpwjil1zfn89ryrdpl20fim8x1srl8s1hm5bg35r"; depends=[]; }; fslr = derive2 { name="fslr"; version="2.25.2"; sha256="0az215n4ra3g6v34cwv8rrjpjq8c9mx34fmjqk7icdwm2raw32vh"; depends=[neurobase oro_nifti R_utils]; }; @@ -10066,7 +10254,7 @@ in with self; { fssemR = derive2 { name="fssemR"; version="0.1.8"; sha256="1rja69b6x5vc302nksh5m6ssp2lx8drv9gjnkv6j9xr3hd2407xi"; depends=[glmnet igraph MASS Matrix mvtnorm qpdf qtl Rcpp RcppEigen stringr]; }; fst = derive2 { name="fst"; version="0.9.8"; sha256="0r96inwrr960m7wmc80603bw2vvvwab225bh9dq3lalwhy4yiis4"; depends=[fstcore Rcpp]; }; fst4pg = derive2 { name="fst4pg"; version="1.0.0"; sha256="1sa35k2134wd5i5w737rbx1clk96l36a98na9c5gj51nxba9b7vm"; depends=[dplyr fpopw furrr future ggplot2 gplots purrr rlang scales stringr tibble tidyr]; }; - fstcore = derive2 { name="fstcore"; version="0.9.14"; sha256="0mhk4l86iypg86l0jjs7szxllcy10h4rh5qy2gsmpmiv003gm3nh"; depends=[Rcpp]; }; + fstcore = derive2 { name="fstcore"; version="0.9.18"; sha256="00wzpr2i7s9pc3alvn4b8f1wgmfqplpwdif9rh9x8qqnylbixiqq"; depends=[Rcpp]; }; fsthet = derive2 { name="fsthet"; version="1.0.1"; sha256="0z6az1jcvdahgn97r6cpj1s6fn0lvr7j12gcw2r7wbpajrvyl5j6"; depends=[]; }; ftDK = derive2 { name="ftDK"; version="1.0"; sha256="1xs2rr2afjza97kpym5zkas3k78pilxjlh7lp1gc66banldr71g2"; depends=[dplyr httr pbapply purrr tibble]; }; ftExtra = derive2 { name="ftExtra"; version="0.6.1"; sha256="102afklfr6lz4vby9ify8ix19y6q4hqbl36ksal6cgx10jasn6pg"; depends=[dplyr flextable jsonlite magrittr purrr rlang rmarkdown stringr tibble tidyr tidyselect vctrs xfun yaml]; }; @@ -10097,7 +10285,7 @@ in with self; { funique = derive2 { name="funique"; version="0.0.1"; sha256="0p9k4nxjns1xid9vmslkaap0hm6yq6pbyvylgygd808if4q1z8k6"; depends=[]; }; funkycells = derive2 { name="funkycells"; version="1.1.1"; sha256="1pk0m25z4d9h7qqxj87scflbcs2sw4xngj7c0dvxd0y11zb4hs7h"; depends=[fda ggplot2 rpart spatstat_explore spatstat_geom stringr tidyr]; }; funkyheatmap = derive2 { name="funkyheatmap"; version="0.5.0"; sha256="1rgb49pzhz91qlw75zp0bi231nc9frf1wrp1xd22hpydccklvq6r"; depends=[assertthat cli cowplot dplyr ggforce ggplot2 jsonlite patchwork purrr RColorBrewer Rdpack stringr tibble tidyr]; }; - funmediation = derive2 { name="funmediation"; version="1.0.1"; sha256="1h4jic73f7ywk2g1mkg188q0bq6x8sn9sm7jhr8gvrnmh167ajw7"; depends=[boot refund tvem]; }; + funmediation = derive2 { name="funmediation"; version="1.0.2"; sha256="13sa284xmi4bjsdkmcd69sn2vw8ncfn5kpk0aznjl9gi6j33cmi8"; depends=[boot refund tvem]; }; funnelR = derive2 { name="funnelR"; version="0.1.0"; sha256="143lb048krgh8rkkz6sm8h464kdy62w29fvvyar795vqi10bb5fy"; depends=[ggplot2]; }; funneljoin = derive2 { name="funneljoin"; version="0.2.0"; sha256="03r03ja0081cn9yd1ib5crj7rsyrccnlqqazgy6jmi6qvwlikrhw"; depends=[broom dplyr forcats glue magrittr purrr rlang tidyr]; }; funpca = derive2 { name="funpca"; version="9.0"; sha256="09xdqlma9ywjj8zbj7jjjfbh0vydvni65xgdjymchl0zfhfw8ihl"; depends=[Brobdingnag fda MASS nlme]; }; @@ -10106,6 +10294,7 @@ in with self; { funrar = derive2 { name="funrar"; version="1.5.0"; sha256="1c9mjbl8g0w7bk7kkms14dyq7yi4c8id4ln29khfabim61dapmqd"; depends=[cluster Matrix]; }; funreg = derive2 { name="funreg"; version="1.2.2"; sha256="0dagzz5pl16l2jkkj11z41y68s75jxmyl46csda6vzlgjc7n4ji8"; depends=[MASS mgcv mvtnorm]; }; funspace = derive2 { name="funspace"; version="0.1.1"; sha256="10yvjx5iydpkn3pjh7f874sjcxg5fzadan7j0rdczm2l64iy6a5m"; depends=[ade4 ape ks MASS mgcv missForest paran phytools viridis]; }; + funspotr = derive2 { name="funspotr"; version="0.0.4"; sha256="0n437kkv1dnpna32rbyr0r5kl6qhmbygf2kmng7w5ni8p1xjwmh2"; depends=[callr dplyr formatR fs glue here httr knitr lifecycle purrr r_import readr stringr tibble tidyr]; }; funtimes = derive2 { name="funtimes"; version="9.1"; sha256="0gz26djl534d42wxspg9hl0ndhzzhkr9d4vp87afqqg9401qcgcz"; depends=[dbscan Kendall lmtest mlVAR Rdpack sandwich vars]; }; furniture = derive2 { name="furniture"; version="1.9.14"; sha256="07ds1vk1bvv6027g2z93161g3pkdp9vj3prbkjbwkj392sc9rg04"; depends=[dplyr knitr]; }; furrr = derive2 { name="furrr"; version="0.3.1"; sha256="12z4q0fn7asxis17hisi82bvfabl5if1338lmfqmkrwv5rg7748d"; depends=[future globals lifecycle purrr rlang vctrs]; }; @@ -10117,9 +10306,9 @@ in with self; { futile_logger = derive2 { name="futile.logger"; version="1.4.3"; sha256="1r3nayk0z9n1svbf8640vw90dal5q07nkn0gv4bnva3pbzb352sy"; depends=[futile_options lambda_r]; }; futile_options = derive2 { name="futile.options"; version="1.0.1"; sha256="0w15agpi88y3qkv6fl72zy2pzyplzgvnj41a4ixhg64mw1sck73s"; depends=[]; }; futility = derive2 { name="futility"; version="0.4"; sha256="0zjb87brz7pkx3nq3q30y69cmcxpqqsra447p60qh7005kgr9vx4"; depends=[]; }; - future = derive2 { name="future"; version="1.33.0"; sha256="0nwk8y3qv2dj41qxrciic6rkpy6lzrhpd5v886zmcjyf6ndyna22"; depends=[digest globals listenv parallelly]; }; - future_apply = derive2 { name="future.apply"; version="1.11.0"; sha256="1s019gdmmv0yr8011vm23p7apznbzfw54z9nmymkxc5mp7730yri"; depends=[future globals]; }; - future_batchtools = derive2 { name="future.batchtools"; version="0.12.0"; sha256="1fr4w4czslx1cxlpj9xq5v7093xsrsgqlcgryy3vzgjgy0hyp40a"; depends=[batchtools future parallelly]; }; + future = derive2 { name="future"; version="1.33.1"; sha256="1xvb7rhwnsi7l735jfrh7ij0l6q6hazwcb2620hvfjwl2kkpk00r"; depends=[digest globals listenv parallelly]; }; + future_apply = derive2 { name="future.apply"; version="1.11.1"; sha256="0zf22vip8w50pywc47xjghca9wkvcsvvfaa2yfaydwwzc3ss3bh2"; depends=[future globals]; }; + future_batchtools = derive2 { name="future.batchtools"; version="0.12.1"; sha256="0cfr4y6d0x1vm0qdpj2b6i9jddd6065iwbv99nix7nls4dzylwfv"; depends=[batchtools future parallelly]; }; future_callr = derive2 { name="future.callr"; version="0.8.2"; sha256="14hq53cam65ff25l6y17zv37448ls90sa0w51f13199m1kffaaqb"; depends=[callr future]; }; future_tests = derive2 { name="future.tests"; version="0.7.0"; sha256="10g1w99xqr7l0cn27642aphqcvfidgpas38f84r815yy6k1ryrlx"; depends=[cli crayon future prettyunits sessioninfo]; }; futureheatwaves = derive2 { name="futureheatwaves"; version="1.0.3"; sha256="122b2z86bzxfch67y6cpq8wj62mw0dgkzbmnpwi247kdx7w5mw1f"; depends=[data_table dplyr ggplot2 ggthemes leaflet Rcpp stringr tidyr]; }; @@ -10130,8 +10319,7 @@ in with self; { fuzzyjoin = derive2 { name="fuzzyjoin"; version="0.1.6"; sha256="0s5rhqz8vih4za3a8k1k7i3gq8hj0w7bqnakw40k6mg87jvyzsj7"; depends=[dplyr geosphere purrr stringdist stringr tibble tidyr]; }; fuzzyreg = derive2 { name="fuzzyreg"; version="0.6.2"; sha256="056ryj4w26fb4fpy43fgvqs8ijcpm6v503pnzw73d8gxahwkvwl2"; depends=[limSolve quadprog]; }; fuzzywuzzyR = derive2 { name="fuzzywuzzyR"; version="1.0.5"; sha256="1g73xivxyh5fvppccgnxhgar6jsl6zsr2djkg0bhh10i633l56ia"; depends=[R6 reticulate]; }; - fwb = derive2 { name="fwb"; version="0.1.2"; sha256="1h6ydh9rzs44xr89995bj4z91n4vc2xa1gjkh3nfhzjk6cgnja02"; depends=[chk pbapply rlang]; }; - fwi_fbp = derive2 { name="fwi.fbp"; version="1.7"; sha256="1wk9cr0kk6zkbf111bv87n7b1wwx1qrsbjxydvbjvy8bgz0nfa62"; depends=[]; }; + fwb = derive2 { name="fwb"; version="0.2.0"; sha256="02r6p2ck56lm3ip105cp0m5q05lifynpq767bl2igf7zsvhjqpak"; depends=[chk pbapply rlang]; }; fwildclusterboot = derive2 { name="fwildclusterboot"; version="0.13.0"; sha256="0slm28pgvfsrsdvz2i1h231gkf4iq6gdlspyzppn8nwhngvic5hd"; depends=[collapse dqrng dreamerr Formula generics gtools JuliaConnectoR MASS Matrix Rcpp RcppArmadillo RcppEigen rlang summclust]; }; fwlplot = derive2 { name="fwlplot"; version="0.2.0"; sha256="1fi2ijfkpxfbwxfcyc5mk2c7mpj6z7lrwm8wlilk2g04y6jmw84l"; depends=[data_table fixest ggplot2]; }; fwsim = derive2 { name="fwsim"; version="0.3.4"; sha256="0fy87c1x5hihfcppv1pvk3b0pwl6ygqpka40x55gbpkgssdigb1l"; depends=[Rcpp]; }; @@ -10140,6 +10328,7 @@ in with self; { fxregime = derive2 { name="fxregime"; version="1.0-4"; sha256="0ml1q0xp90jfng6a60pfkp6j7wajk6pz4p4wm08rfqikgsdvp0m4"; depends=[car sandwich strucchange zoo]; }; fy = derive2 { name="fy"; version="0.4.2"; sha256="1gbv2hvh3y9qdld660i250snwxn4irp41qrr3pc1nakbf5b9aqnz"; depends=[data_table fastmatch hutils]; }; g_data = derive2 { name="g.data"; version="2.4"; sha256="14a4m0v38p3j1k1kymkxwydlgm8b73hlx9m80sg1l4aj38fvflzl"; depends=[]; }; + g_ridge = derive2 { name="g.ridge"; version="1.0"; sha256="1llks14akpdpa3v80kpr8sgmdlmjsvk7hcbilnk0zqlh1xi066km"; depends=[]; }; g3viz = derive2 { name="g3viz"; version="1.1.5"; sha256="0pjn1rgqbrkbdrcnf01j9lm3257fnp7b0p5p3hyhg8srd990wp61"; depends=[cBioPortalData htmlwidgets jsonlite stringr]; }; gCat = derive2 { name="gCat"; version="0.2"; sha256="0n1x039a0pm4sz2rwsgq82n423zgp4xni69129dh3nvxfrc0hzc5"; depends=[]; }; gFormulaMI = derive2 { name="gFormulaMI"; version="1.0.0"; sha256="1zp8gn83h7bnfygi46qqhda4z5n2axbvcmqvhz60ba0daknw0jx0"; depends=[mice]; }; @@ -10147,21 +10336,21 @@ in with self; { gJLS2 = derive2 { name="gJLS2"; version="0.2.0"; sha256="112fyy76ry6g0xinhy09s5vdcd11jw7sivadlx05ali89lm5nigg"; depends=[ggplot2 MASS MCMCpack moments nlme plyr quantreg]; }; gKRLS = derive2 { name="gKRLS"; version="1.0.2"; sha256="0kkk463mgrypc5vihv9hvj7dsdwv6yvmhxp6iy6ip1k7nqi8xdvf"; depends=[Matrix mgcv mlr3 R6 Rcpp RcppEigen sandwich]; }; gLRTH = derive2 { name="gLRTH"; version="0.2.0"; sha256="1drmmr576n3pbr0q1cnnx4k7r4iz061n2cizv1kpr3wcc1g291pn"; depends=[]; }; - gMCP = derive2 { name="gMCP"; version="0.8-15"; sha256="01048j9489rrhv9syqrbw4c5i5gsll41ysm27awxw6l1rshbqsqn"; depends=[CommonJavaJars JavaGD MASS Matrix multcomp mvtnorm PolynomF rJava xlsxjars]; }; - gMCPLite = derive2 { name="gMCPLite"; version="0.1.3"; sha256="1v5nzzyxwjlrrn6qqi0jgd5z4zzyq5abjhd38cvr6rhyjjj9hlxi"; depends=[ggplot2 MASS mvtnorm]; }; + gMCP = derive2 { name="gMCP"; version="0.8-16"; sha256="0jkq538xif87asrllmdbcf9hz9z4p5j1xnvf3fp2kc9p48jqdx75"; depends=[CommonJavaJars JavaGD MASS Matrix multcomp mvtnorm PolynomF rJava xlsxjars]; }; + gMCPLite = derive2 { name="gMCPLite"; version="0.1.4"; sha256="1y9pfvrxmp3gybn1cl3hhmdvp1v2cl1gqclg6lbz0ikzja9bfwjg"; depends=[ggplot2 MASS mvtnorm]; }; gMOIP = derive2 { name="gMOIP"; version="1.5.0"; sha256="1ihbwzc2vmbzs1rvmqv386n0snmsljdv1jqbpyx21c8xkx81wc4v"; depends=[dplyr geometry ggplot2 ggrepel MASS Matrix plyr png purrr Rfast rgl rlang sp tibble tidyr tidyselect]; }; gMWT = derive2 { name="gMWT"; version="1.4"; sha256="1iv7dav6l9gx6vhghcyasdizjsz2f8yzcgkj2i50kpgw74ljg5ia"; depends=[clinfun Rcpp RcppArmadillo]; }; gProfileR = derive2 { name="gProfileR"; version="0.7.0"; sha256="1h1v0kgpsn04ald2izznh7fr2riwisj5hcgz4k7h3qc931rf0r4k"; depends=[plyr RCurl]; }; - gRain = derive2 { name="gRain"; version="1.3.14"; sha256="1w6fmbq6ik0c0aj7xv53nrg96gw1kfk8vhqp57rhmq42m8i4k0i8"; depends=[broom gRbase igraph magrittr Rcpp RcppArmadillo RcppEigen]; }; + gRain = derive2 { name="gRain"; version="1.4.1"; sha256="11b40ngfzqqx9pgfbgx7qr63ikccxh1hg9snw55anw32hym2dyfr"; depends=[broom gRbase igraph magrittr Rcpp RcppArmadillo RcppEigen]; }; gRaven = derive2 { name="gRaven"; version="1.1.8"; sha256="0nmnmn5ni4ml5r7ah7kl8n51r5bcd9r6ncg7yz4qypbdqdamqx87"; depends=[gRain gRbase rlang]; }; - gRbase = derive2 { name="gRbase"; version="2.0.0"; sha256="0hnrdza3614mgb76br0cfx49kpjg1s0563shljl6jcqhbxhw944v"; depends=[igraph magrittr Matrix Rcpp RcppArmadillo RcppEigen]; }; - gRc = derive2 { name="gRc"; version="0.4.5"; sha256="051xypj0mcrmb4xyrbpicz08dj74klrfbzi463hvbgcvxyh75m3c"; depends=[gRbase magrittr MASS Rcpp RcppArmadillo]; }; + gRbase = derive2 { name="gRbase"; version="2.0.1"; sha256="1ac1qx219g2p3wlxh57jqhifckxm8jqb3vi3pmlv8m29hm997r0y"; depends=[igraph magrittr Matrix Rcpp RcppArmadillo RcppEigen]; }; + gRc = derive2 { name="gRc"; version="0.4.6"; sha256="0jrskkp8850b3nanlz19iycwnsiyfxpwxi8vy6bvv36lbhslg86l"; depends=[gRbase magrittr MASS Rcpp RcppArmadillo]; }; gRim = derive2 { name="gRim"; version="0.3.0"; sha256="1iimjfqy2sdxxy2lvsaywxap8zik2qikjy2ib06mqjxrv711fx2a"; depends=[gRain gRbase igraph magrittr Rcpp RcppArmadillo RcppEigen]; }; gSeg = derive2 { name="gSeg"; version="1.0"; sha256="0lixlirisnxk29zlrragi3l8j1abb5cl7zh6vhx7l5hjdvh8ldq9"; depends=[]; }; gStream = derive2 { name="gStream"; version="0.2.0"; sha256="1f4xnbavm99yhjmaahazigps41mqlfvvl29kf4fs1yjqr531y36b"; depends=[]; }; gTests = derive2 { name="gTests"; version="0.2"; sha256="1h1sd8mrzcniq7rx7frdlxwpnsn8lifng1x99fqq703hs3znl1yq"; depends=[ade4]; }; gTestsMulti = derive2 { name="gTestsMulti"; version="0.1.1"; sha256="126731bb0f454x0pr378x6ri71i8nl6i6zcqx9jdv68wj8f4g0zy"; depends=[MASS Matrix]; }; - gWQS = derive2 { name="gWQS"; version="3.0.4"; sha256="1yhbcmznii3n2sbw0z2rw1sdn0zlk5v2z7ww3nl7rn005g4q04hi"; depends=[broom cowplot dplyr future future_apply ggplot2 ggrepel kableExtra knitr MASS Matrix nnet plotROC pscl reshape2 rlist]; }; + gWQS = derive2 { name="gWQS"; version="3.0.5"; sha256="11qs7vxal3br7rg379b5v2w06nvsipk7465c9l5lpifr8g0g561r"; depends=[bookdown broom car cowplot future future_apply ggplot2 ggrepel kableExtra knitr MASS Matrix nnet plotROC pscl reshape2 rlist]; }; gWidgets2 = derive2 { name="gWidgets2"; version="1.0-9"; sha256="1ifljpdazzmwf3mgkg9g76365n2cmw8dd3da161fpvw84xxyznfl"; depends=[digest]; }; gWidgets2tcltk = derive2 { name="gWidgets2tcltk"; version="1.0-8"; sha256="02ic4avpa33dnqsnm1mzg7ci1psngk1p169pqf259szf6v39qf8h"; depends=[digest gWidgets2 memoise]; }; gadget2 = derive2 { name="gadget2"; version="2.3.11"; sha256="0ka5mbr9nppgsr95l33k510h278z49j6chbbqvbba0gan9842kwg"; depends=[]; }; @@ -10170,12 +10359,12 @@ in with self; { gaiah = derive2 { name="gaiah"; version="0.0.5"; sha256="1s2chr3zjgvmmic178c1fixbvf501q7jvxdg8204jalh9iii14vb"; depends=[dplyr geosphere magrittr raster rlang sp]; }; gainML = derive2 { name="gainML"; version="0.1.0"; sha256="1mqhrdjdmc2n7dxilxkqn6xq7z0qnxpigw5bbffnjvvsmdamah0n"; depends=[fields FNN]; }; gains = derive2 { name="gains"; version="1.2"; sha256="1nmrhc7qjlyzn04r1qyjdws5fin3idmi789kbxzilax12ya8xr7k"; depends=[]; }; - galah = derive2 { name="galah"; version="1.5.4"; sha256="0x1xds6m6zn2mjw83na4dpjazsdpmlc4py3jnf04l9jk1sav6prd"; depends=[assertthat crayon crul data_tree digest dplyr glue httr jsonlite lifecycle readr rlang sf stringr tibble tidyselect]; }; + galah = derive2 { name="galah"; version="2.0.0"; sha256="1vh2w3jza5vm7w2j3zix83syrvkm8d3jy77pknsncnv5wljikh84"; depends=[cli crayon dplyr glue httr2 jsonlite lifecycle potions purrr readr rlang sf stringr tibble tidyr tidyselect]; }; galamm = derive2 { name="galamm"; version="0.1.1"; sha256="0iyszijnlg9bsh8234qm1vdrvcbnas18ylks9v4jg32mxnai6vpq"; depends=[lme4 Matrix memoise mgcv nlme Rcpp RcppEigen Rdpack]; }; galigor = derive2 { name="galigor"; version="0.2.5"; sha256="1lfw1kikf90nv9g0xrb656fbilmxdk64zrzi43wrz7y2y55sd5xv"; depends=[cli crayon dplyr gargle getProxy magrittr purrr rappsflyer rfacebookstat rgoogleads rmytarget rstudioapi rvkstat ryandexdirect rym tibble tidyr]; }; galts = derive2 { name="galts"; version="1.3.2"; sha256="0a7yhdxja4jq2rn6p8imfg7ih3i4njqsz8zmkgwckj4q2x042lj5"; depends=[DEoptim genalg]; }; galvanizer = derive2 { name="galvanizer"; version="0.5.3"; sha256="1b9431mmgpqyd49b8nlsrlxjq9j9fyj73226bi9jic1p867533kk"; depends=[dplyr httr jsonlite lubridate magrittr rlang tibble tidyjson tidyr tidyselect]; }; - gam = derive2 { name="gam"; version="1.22-2"; sha256="1yh2rahcbi2fbsi1yps1l51xxljc7lcs7h729y5vjj4l492pywzy"; depends=[foreach]; }; + gam = derive2 { name="gam"; version="1.22-3"; sha256="153ig136i3dpy87f8v9f5055x94sl74fnrf5ivpa9fc67f76ikb6"; depends=[foreach]; }; gamCopula = derive2 { name="gamCopula"; version="0.0-7"; sha256="0zi9g2vxkn1hxc2qyyr1x8p1f9w7fc1j5dmm2mmm333gixkkz9nb"; depends=[copula doParallel foreach gsl igraph MASS mgcv numDeriv VineCopula]; }; gamRR = derive2 { name="gamRR"; version="0.7.0"; sha256="0zn8921a4i1lz5wpdfbd72pqb25r12abyqw7y2w53kfhdzs57f3l"; depends=[boot mgcv]; }; gamair = derive2 { name="gamair"; version="1.0-2"; sha256="1cjrd576l9md1jb1fc1y6iay5y49i0d8by024qsc7yik6f6mdl13"; depends=[]; }; @@ -10203,12 +10392,11 @@ in with self; { gamlssbssn = derive2 { name="gamlssbssn"; version="0.1.0"; sha256="1l8d4qwmq9dklm9imb3cvlncwa6jygf8kg2j1599h1nfhyyhj2vv"; depends=[gamlss gamlss_dist MASS]; }; gamm4 = derive2 { name="gamm4"; version="0.2-6"; sha256="128c725y9s07c1m9cvd9hgi9hldrymcs5divd8pw7bdjh9jvdiap"; depends=[lme4 Matrix mgcv]; }; gammSlice = derive2 { name="gammSlice"; version="2.0-2"; sha256="1klxg1yhmfaz1zjnw1kxl1lm5plkakqh014rpkak2lj8zgf8qnyy"; depends=[KernSmooth lattice mgcv]; }; - gamma = derive2 { name="gamma"; version="1.0.4"; sha256="02qdv1kzz1pw07zksxl97ra4wd15xgdzfaq9qfwfcci67xmx88ap"; depends=[ggplot2 IsoplotR rlang rxylib]; }; gamreg = derive2 { name="gamreg"; version="0.3"; sha256="1svrgbb8qdy2hzpq1g38v2lzmlbrn7qljix827biqzwgiajy69gg"; depends=[doParallel foreach glmnet Rcpp RcppArmadillo robustHD]; }; gamsel = derive2 { name="gamsel"; version="1.8-2"; sha256="1w1z2g0njsfv1ah6w3zw4lcgnaxask5mgykb204jzp6hpnc1a6cb"; depends=[foreach mda]; }; gamselBayes = derive2 { name="gamselBayes"; version="2.0-1"; sha256="1947lpxhiyf2kf22miliikx8plzhb1l97w440fb626vvgwfa340j"; depends=[Rcpp RcppArmadillo]; }; - ganDataModel = derive2 { name="ganDataModel"; version="1.1.4"; sha256="1vpw5ijl0mr1vgzqavsmich0f0vhi94df6d92a7adi915inqvdaz"; depends=[Rcpp tensorflow]; }; - ganGenerativeData = derive2 { name="ganGenerativeData"; version="1.4.3"; sha256="0fsdzjhawkdc997f3w73da81h00a4ar8aljmfypy311nsg8nda7c"; depends=[Rcpp tensorflow]; }; + ganDataModel = derive2 { name="ganDataModel"; version="1.1.5"; sha256="0a7y76g693qc6ris8ic28a78p1r2kkz4szj1wd4p8544vwmh4vwz"; depends=[Rcpp tensorflow]; }; + ganGenerativeData = derive2 { name="ganGenerativeData"; version="1.5.6"; sha256="14q5mrj7jqn8jxy2rjd46ps89wfgqa6jrvn8k1hh2s1m0wsf3bra"; depends=[Rcpp tensorflow]; }; gap = derive2 { name="gap"; version="1.5-3"; sha256="1kjjnh0s9aicwkd7wsisi4c75y701irigsbzp7y6f2264bcgj6bf"; depends=[dplyr gap_datasets ggplot2 plotly Rdpack]; }; gap_datasets = derive2 { name="gap.datasets"; version="0.0.6"; sha256="1jwpsb66sgj2zzgrpgwxc22df66gbhi278ywbmaicc10mipv050y"; depends=[]; }; gapclosing = derive2 { name="gapclosing"; version="1.0.2"; sha256="1nq7wbl3236rg27hpfrl1f20gg0yrjmddcghmnh0yv5nzl52l798"; depends=[doParallel dplyr forcats foreach ggplot2 glmnet magrittr mgcv ranger tidyr tidyselect]; }; @@ -10220,14 +10408,15 @@ in with self; { gargoyle = derive2 { name="gargoyle"; version="0.0.1"; sha256="0lsjplfrc047lb3zjfsc8wl47kll7d85v824k7zlr0n34xbbypq7"; depends=[attempt shiny]; }; garma = derive2 { name="garma"; version="0.9.13"; sha256="0h61f29x2261vky4cwmcfwlix7x1yg8qkhgkhiw1aryqmzvwf0lc"; depends=[BB crayon dfoptim FKF forecast GA ggplot2 hypergeo ltsa lubridate nloptr pracma pso Rsolnp signal tswge zoo]; }; garray = derive2 { name="garray"; version="1.1.2"; sha256="0s2dgi556x9jnhafvzz4qkxdbq9dm12gsvsqd2g9iy3468fx9flq"; depends=[]; }; - gaselect = derive2 { name="gaselect"; version="1.0.21"; sha256="0grn08w7cy8vsn8cys7j1sp3qy4h90z20f886nva22zmkn1ha9wd"; depends=[Rcpp RcppArmadillo]; }; - gasfluxes = derive2 { name="gasfluxes"; version="0.6-1"; sha256="08lngyxr39iycp1fnyvl27qks421rx6l8x1akysnixhxy9f53apx"; depends=[data_table MASS sfsmisc]; }; + gaselect = derive2 { name="gaselect"; version="1.0.22"; sha256="0hk18dl851z9dnw9vd9836lr7j3wlg3kk31k185p2yyk7l821mqp"; depends=[Rcpp RcppArmadillo]; }; + gasfluxes = derive2 { name="gasfluxes"; version="0.6-2"; sha256="18yr3331wriddxbnxag3ms6lmx709mhrngv8sxfg0zcm271pkl1r"; depends=[data_table MASS sfsmisc]; }; gasmodel = derive2 { name="gasmodel"; version="0.5.1"; sha256="1q98hyn45k0r2zv8dd7f952jhl8xynpv9wkvijdync2hhi8hy6qi"; depends=[abind arrangements CircStats dplyr ggplot2 Matrix mvnfast nloptr numDeriv pracma tidyr]; }; - gasper = derive2 { name="gasper"; version="1.1.4"; sha256="1r0hhn7rk2a1pdq02y3ih8f77b2zna2001pb5lyrp59klmda1d09"; depends=[curl ggplot2 httr Matrix Rcpp RcppArmadillo RSpectra]; }; + gasper = derive2 { name="gasper"; version="1.1.5"; sha256="0ds0lsv3wy4mb8y3pld0dhl9k6fcn85z1ij7cswfqafm7gv72bhr"; depends=[curl ggplot2 httr Matrix Rcpp RcppArmadillo RSpectra]; }; gastempt = derive2 { name="gastempt"; version="0.5.5"; sha256="0pz580nhr9hnpzdi59l00jv34jmy5iyh5skbwslq6gzjdw3jgsf4"; depends=[assertthat BH dplyr ggplot2 nlme Rcpp RcppEigen RcppParallel rstan shiny StanHeaders stringr tibble utf8]; }; - gaston = derive2 { name="gaston"; version="1.5.9"; sha256="1f4pr5s4p4rw1smvsh2gwjxp7hh43j1fpadl286ma9i62kirpyq7"; depends=[Rcpp RcppEigen RcppParallel]; }; + gaston = derive2 { name="gaston"; version="1.6"; sha256="1knjyw2dsarljj2zsqp3hi6hk6m90sfqp2l535h3arj70l3rq9x4"; depends=[Rcpp RcppEigen RcppParallel]; }; gateR = derive2 { name="gateR"; version="0.1.13"; sha256="0arnjb5jzsc8xfqj08h352h7j0adijaj1fra08nx0jc41hfs3ljg"; depends=[fields lifecycle rlang sparr SpatialPack spatstat_geom terra tibble]; }; gatepoints = derive2 { name="gatepoints"; version="0.1.5"; sha256="0f9n32s1ssp4nmjarls4llmi91jxh4w4qwxf7awxaalqz4lrzbg2"; depends=[]; }; + gatoRs = derive2 { name="gatoRs"; version="1.0.1"; sha256="0m3hhykyn0yhnhqsyjdvmfk04zjj7g5hp925clfda145rp6khch1"; depends=[CoordinateCleaner dplyr leaflet magrittr parsedate rgbif ridigbio spatstat_geom spThin stringr terra]; }; gauseR = derive2 { name="gauseR"; version="1.2"; sha256="1rvw7dbrsxqqch2dgslabc47llb64ljakc60m47gql5n9br7akbd"; depends=[deSolve]; }; gaussDiff = derive2 { name="gaussDiff"; version="1.1"; sha256="0fqjdxp2ibbami75ba16d02dz4rz5sk8mni45di9anydx44g9d45"; depends=[]; }; gausscov = derive2 { name="gausscov"; version="1.0.3"; sha256="0j9cnj2bpmv5vma7c2ihc5fa1ly5n7ll13fi1bqlvivjm981zss0"; depends=[]; }; @@ -10259,10 +10448,11 @@ in with self; { gcmr = derive2 { name="gcmr"; version="1.0.3"; sha256="0m4px1w41226clczzmnzal3hs0qwrvlhhdnkcxj1i7qp358ksxvm"; depends=[betareg car Formula lmtest nlme sandwich sp]; }; gconsensus = derive2 { name="gconsensus"; version="0.3.2"; sha256="065i587611nh3fiaxlp88qzd12cjxpbdvxn8pvd99fmk88d809zs"; depends=[coda MASS rjags]; }; gcookbook = derive2 { name="gcookbook"; version="2.0"; sha256="11g1q187l4j31b6cdzdx5z3s14z3s09l7ynl36pzzn9j19l8cmrc"; depends=[]; }; - gcplyr = derive2 { name="gcplyr"; version="1.6.0"; sha256="01qhk9f8rjabs4vi5rfd9crmb2dwv7xflj3ci5abn04b9wykbmjf"; depends=[dplyr tidyr]; }; + gcplyr = derive2 { name="gcplyr"; version="1.7.1"; sha256="0ff07m7pddw494p7xj7d3hvvwyd3k0cqwyfmyidnv37il6ap9iir"; depends=[dplyr tidyr]; }; + gdalBindings = derive2 { name="gdalBindings"; version="0.1.10"; sha256="10za6izh1a1sbysvplgqdsb30hgd7lqi148w78wxzyzj7nd13syq"; depends=[data_table R6 Rcpp]; }; gdalUtilities = derive2 { name="gdalUtilities"; version="1.2.5"; sha256="19vi6mr5jwlb00r33hkz7d0n9dar95hwdvbqbhh2dmha128fjwia"; depends=[sf]; }; gdalcubes = derive2 { name="gdalcubes"; version="0.6.4"; sha256="1zvx6adc7i1811ri2i5c5w4rkh5wi1rmxi2xm8amf6cwqym8rnzd"; depends=[BH jsonlite ncdf4 Rcpp]; }; - gdalraster = derive2 { name="gdalraster"; version="1.5.0"; sha256="14zxvc2w0n2qbjkjikny5dpcsf0anql0fq4rqq7l9739yrazm7q7"; depends=[Rcpp]; }; + gdalraster = derive2 { name="gdalraster"; version="1.7.0"; sha256="18a1kw31hs5qa03jj6ddxvv0hpjr6c5g3nbwgrgs48kjrqwbdc6z"; depends=[Rcpp xml2]; }; gdata = derive2 { name="gdata"; version="3.0.0"; sha256="0zxi0634dkgczw7gicj8r6mhb83cpkxhsy2iivz0b9v52y9bjmm4"; depends=[gtools]; }; gde = derive2 { name="gde"; version="0.2.1"; sha256="05paf15dn2l7mfzhy3p3k7a2831fj9fwvwgljhcv7wpdj7djdccs"; depends=[data_table dplyr DT ggplot2 httr jsonlite leaflet progress R_utils readr RSQLite shiny shinycssloaders shinyWidgets stringr XML]; }; gdi = derive2 { name="gdi"; version="1.5.4"; sha256="1lsflav0wday5f6fclwwvnzj0b59hh4raw216karqshcs80c8ldf"; depends=[jpeg png]; }; @@ -10271,13 +10461,13 @@ in with self; { gdistance = derive2 { name="gdistance"; version="1.6.4"; sha256="0awrv10adi31inrgxbb83p73fq05i2xifj2xf16z6mp2lwzgvxba"; depends=[igraph Matrix raster sp terra]; }; gdldata = derive2 { name="gdldata"; version="0.1"; sha256="19zvchn55d70miqgxnbz3y1svj6gn6236l897qc0cbqmv48mjxh4"; depends=[httr2]; }; gdm = derive2 { name="gdm"; version="1.5.0-9.1"; sha256="10c4fk6pbd946is8h8cr8qblrq6cch5zhlhrxqd8ix5wknm8cqn8"; depends=[doParallel foreach pbapply raster Rcpp reshape2 vegan]; }; - gdpc = derive2 { name="gdpc"; version="1.1.3"; sha256="1ba7ma1y4pxvx7byg19fzgpp1zswcihdaifyhb7zdadizxjzyj43"; depends=[doParallel foreach Rcpp RcppArmadillo xts zoo]; }; + gdpc = derive2 { name="gdpc"; version="1.1.4"; sha256="1m54nm5ikarrmlpjnvl70v2xirk5xaqnv3i3pcwy96796ymk5ars"; depends=[doParallel foreach Rcpp RcppArmadillo xts zoo]; }; gds = derive2 { name="gds"; version="0.1.1"; sha256="0gwq0k80rnbg4ibz6dz8sk6hqaklrdbv4vzv8zyk74am3aqipn20"; depends=[]; }; - gdtools = derive2 { name="gdtools"; version="0.3.4"; sha256="00mak9js1s05j5bmkda24nl2z023jsyg8zc60nm4h2xs7w1l7mxa"; depends=[curl fontquiver gfonts htmltools Rcpp systemfonts]; }; + gdtools = derive2 { name="gdtools"; version="0.3.5"; sha256="155qa55wr9vf2j2j4qjqqlkdaqlvvlvsm2wmysnhli47bfh6vd4c"; depends=[curl fontquiver gfonts htmltools Rcpp systemfonts]; }; gdxdt = derive2 { name="gdxdt"; version="0.1.0"; sha256="1yrjixq4srmaiy5iaprix4096yhf3ldyklgjag4kxd3l5acwap4h"; depends=[data_table]; }; gear = derive2 { name="gear"; version="0.3.4"; sha256="0ibn2kr0rjj546cbcqhr6x69s25xh7si5fri59055j42g62mdnxy"; depends=[autoimage optimx Rcpp]; }; - gecko = derive2 { name="gecko"; version="0.1.2"; sha256="11zvay16kjs0i60vlfglcvd2ym3yk9wwfa76qql2j5i7y3wmjbjk"; depends=[geosphere sp terra]; }; - gee = derive2 { name="gee"; version="4.13-25"; sha256="128f810h88jxz1wdcmqjj3drb69b0rwx38l682i97rzb5wg8hh71"; depends=[]; }; + gecko = derive2 { name="gecko"; version="1.0.0"; sha256="1q0wzg3mkb6z7zs81zynj6x159w99h5an20a6m8wdqbday5sccyc"; depends=[biomod2 geosphere kernlab red sp terra]; }; + gee = derive2 { name="gee"; version="4.13-26"; sha256="1323qv2hiinixmwcb8rfvf5qmkffnnq9f1g8kj9amwsimfsm71cs"; depends=[]; }; geeCRT = derive2 { name="geeCRT"; version="1.1.2"; sha256="0gqwyf6r3cyzfr6rcl5id5x937asllyc61vrs6416j1awb6d2yn3"; depends=[MASS mvtnorm rootSolve]; }; geeM = derive2 { name="geeM"; version="0.10.1"; sha256="1r9zyjv7r7r7avdqi54dvczf971frz8pgrs1a04kan5mh4ls6xpy"; depends=[Matrix]; }; geeasy = derive2 { name="geeasy"; version="0.1.1"; sha256="1b874hacl0hhd16yfaag3kpqrc0336mmkzja0pa3gf7zj8d6n777"; depends=[geeM geepack ggplot2 lme4 Matrix MESS]; }; @@ -10295,9 +10485,10 @@ in with self; { gems = derive2 { name="gems"; version="1.1.1"; sha256="174mjnpldb0rwjvwdgpcg1acm526gs0pjf9gi5mn9d3x9yz4r5jx"; depends=[data_table MASS msm plyr]; }; gemtc = derive2 { name="gemtc"; version="1.0-2"; sha256="01sas647d3s5adkqg96z0hhr9pig275fz896ghnp313p5k3fz90l"; depends=[coda forcats igraph meta plyr Rglpk rjags truncnorm]; }; gen2stage = derive2 { name="gen2stage"; version="1.0"; sha256="16xbzgkjskzm1wik3dznvwhqddrpmcgsgd372n4a67rbb46jgx6r"; depends=[clinfun]; }; - gen3sis = derive2 { name="gen3sis"; version="1.4"; sha256="00zfxgvh204x759p2bjdi7wwxwp7c9gvl0p8v9c7zh8gkg2767pz"; depends=[BH gdistance Matrix raster Rcpp sp stringr]; }; + gen3sis = derive2 { name="gen3sis"; version="1.5.11"; sha256="07r2x0mwrs1ghsfd0a2zj7m2khwq4pg64xiv3n89zy9w9b6vcyw9"; depends=[BH gdistance Matrix raster Rcpp stringr]; }; gen5helper = derive2 { name="gen5helper"; version="1.0.1"; sha256="0z7hisn57md18vcfb6f44hy6zzp9dirrjyxi4x1id3mqa3mligb6"; depends=[dplyr ggplot2 minpack_lm naturalsort plyr pracma rlang tidyr]; }; - genBaRcode = derive2 { name="genBaRcode"; version="1.2.6"; sha256="1w73ybw63swni19vd693gpv6y9l83ifr1vv16jnyxspiwrla33qy"; depends=[ape Biostrings dplyr futile_logger future future_apply ggnetwork ggplot2 ggraph ggseqlogo ggtree igraph network phangorn RColorBrewer reshape2 S4Vectors shiny ShortRead stringdist VennDiagram visNetwork]; }; + genBaRcode = derive2 { name="genBaRcode"; version="1.2.7"; sha256="1rgx0b3bpqfc75y5x4i714m8xbrgckvg4m9gkqxq0464386s53dd"; depends=[ape Biostrings dplyr futile_logger future future_apply ggnetwork ggplot2 ggraph ggtree igraph network phangorn RColorBrewer reshape2 S4Vectors shiny ShortRead stringdist VennDiagram visNetwork]; }; + genCountR = derive2 { name="genCountR"; version="1.0.0"; sha256="0s5hbvg71vsg02c3z8g2vim431jrc2jfksh28si2ycqi6bz2aj0y"; depends=[]; }; genSEIR = derive2 { name="genSEIR"; version="0.1.1"; sha256="02lprxxpf7ll23habq05b6slgbh978k09sqr6myr2jhlax2snxvk"; depends=[ggplot2 minpack_lm nlsr pracma]; }; genSurv = derive2 { name="genSurv"; version="1.0.4"; sha256="07f6prqpc1mafzb8dyp8xgycrrd548rj9cpn3qz64lh1qjymns3m"; depends=[]; }; genTS = derive2 { name="genTS"; version="0.1.4"; sha256="172xpx8g6048z5hgy9h6j3k6j975hw1q7pmcn5k2s5iaj9x5kjzv"; depends=[shiny]; }; @@ -10339,38 +10530,38 @@ in with self; { genogeographer = derive2 { name="genogeographer"; version="0.1.19"; sha256="0q56ysv5333i27iv1gmd9ilbgn3rw8sb9yq7z76gmn1fak5aqci8"; depends=[dplyr DT forcats ggplot2 knitr leaflet magrittr maps purrr readr rio rlang rmarkdown shiny shinycssloaders shinyjs shinyWidgets tibble tidyr]; }; genomic_autocorr = derive2 { name="genomic.autocorr"; version="1.0-1"; sha256="1lidrjz1flxw4jvhqdi8y813m7ss4kkvm7bxsdpz60dxxw3204gm"; depends=[data_table magrittr reshape]; }; genomicper = derive2 { name="genomicper"; version="1.7"; sha256="1sran9gjjkrq9yxv4630cyhjhm9w9cggyx3amhcncmyiknz6pa76"; depends=[AnnotationDbi DBI reactome_db]; }; - genpathmox = derive2 { name="genpathmox"; version="1.0"; sha256="0yxxaylcqscymhydrjcxd8gi11ih2p100j6qsdxdcifwc4sr1qi0"; depends=[cSEM diagram matrixcalc]; }; + genpathmox = derive2 { name="genpathmox"; version="1.1"; sha256="1pjg3irjlw9gbp2cwqrl5d7nvfhncds3bmxp0878y5yf35sl4smk"; depends=[cSEM diagram matrixcalc]; }; genpwr = derive2 { name="genpwr"; version="1.0.4"; sha256="0cys4zmfq07g99xywqampvmn8g0a6bjjj368d62q5xki2mi9z649"; depends=[ggplot2 MASS nleqslv]; }; genridge = derive2 { name="genridge"; version="0.7.0"; sha256="1f7yvq3g1bgxkkbklklfirk4nqiyh6csvygfbp3z57zywrbp1019"; depends=[car rgl]; }; - genscore = derive2 { name="genscore"; version="1.0.2.1"; sha256="0am6x3bxqgarb47qfsnaqnjy4kl7w2j6wf1pf182mz5qjv82mlxk"; depends=[mvtnorm Rdpack stringr tmvtnorm]; }; + genscore = derive2 { name="genscore"; version="1.0.2.2"; sha256="1ffwnxh1c2wlad4wh9lkvixly0a19l8fcgpp0vxxby6iwsd2vshf"; depends=[mvtnorm Rdpack stringr tmvtnorm]; }; genset = derive2 { name="genset"; version="0.1.0"; sha256="02zldi136sfnq1i8pwb3b97zd44pjdgnfadk4bqp36wm8x95phwi"; depends=[]; }; gensphere = derive2 { name="gensphere"; version="1.3"; sha256="0cf1xmwi32x3ga9m5k7a93vdwix84ny7wxb74mddmfvb3m1v4c7g"; depends=[geometry mvmesh rgl SimplicialCubature SphericalCubature]; }; genstab = derive2 { name="genstab"; version="1.0.0"; sha256="09kg70v8qj8rbqwk0zm3xg54pmrr26l8n1s9x26s8qrsns0dgz0x"; depends=[]; }; gensvm = derive2 { name="gensvm"; version="0.1.7"; sha256="0r1n5icxs313aipl63hdbvki37h2hv1r8ii7m8pyf9h36jxk4lfg"; depends=[]; }; - geoAr = derive2 { name="geoAr"; version="0.0.1.4.2"; sha256="1wzhlccscpdzlyx6w9hh7srgrqc3dw56wd99pcrhlqsx0w6b48n0"; depends=[assertthat attempt curl dplyr glue httr leaflet magrittr sf stringr tidyr]; }; geoBayes = derive2 { name="geoBayes"; version="0.7.3"; sha256="14h3iwc0i8y205wvh81zmgz7x4qd605g7w2d3s4s4whnsmi7wf0q"; depends=[coda optimx sp]; }; geoFKF = derive2 { name="geoFKF"; version="0.1.1"; sha256="1fwzc32dq3ip0crxlmnqfxqky1jbadvdyfaprsbcxpmyrcs4f3qj"; depends=[numDeriv Rcpp RcppArmadillo]; }; geoFourierFDA = derive2 { name="geoFourierFDA"; version="0.1.0"; sha256="1a5ggjyfj5ic9h7fqvy3r7s0i6bmbwk95bf7y3vrmmmj0sxdm1mf"; depends=[magrittr orthopolynom Rcpp RcppArmadillo]; }; - geoR = derive2 { name="geoR"; version="1.9-2"; sha256="1ndrah1aj996s3pdkixai5438xsfcfxcl21an9qxxa9kd8jzbqvw"; depends=[MASS sp splancs]; }; + geoGAM = derive2 { name="geoGAM"; version="0.1-3"; sha256="080rls4rbac809hd4ddjsj2ndb2hv6fvwdnh4yl7j1hnfm1xwv64"; depends=[grpreg MASS mboost mgcv]; }; + geoR = derive2 { name="geoR"; version="1.9-3"; sha256="07p0q8q61irbxql7jxi7djklm1l9az6588sk709yjdqlg9npsglr"; depends=[MASS sp splancs]; }; geoSAE = derive2 { name="geoSAE"; version="0.1.0"; sha256="16fkai95cqwxkylpk1gddyzja80036ghfb4ps3rz1vbbqzhg01x8"; depends=[MASS nlme]; }; geoTS = derive2 { name="geoTS"; version="0.1.8"; sha256="0hjhc68pl1gq9wcgvvagn903vlhwsayf7kka88rdcb6y7rgdlp5v"; depends=[doParallel ff foreach raster robustbase sp]; }; - geobr = derive2 { name="geobr"; version="1.8.1"; sha256="16iw1p0qx57xylb7mp2qgx9fh7667hzfpw8dzakdzp8jpxmwgjwx"; depends=[curl data_table httr sf]; }; + geobr = derive2 { name="geobr"; version="1.8.2"; sha256="160mvxx4pcxiyzrwz24lqfvybb63rykwkhr4s7hsk4jvfskgdglj"; depends=[curl data_table httr sf]; }; geocacheR = derive2 { name="geocacheR"; version="0.1.0"; sha256="04ckxmird6n179xvsx50cjdz046igjxxqdnz5pfxi8pdklnky20c"; depends=[dplyr magrittr stringr threewords tibble]; }; geocausal = derive2 { name="geocausal"; version="0.2.0"; sha256="00i4prrgi02xv0h4r5xfmnl6h9b6arqnvd3vhzrgcmdqv4nl76xk"; depends=[data_table dplyr furrr ggplot2 ggpubr latex2exp mclust progressr purrr raster sf sp spatstat_explore spatstat_geom spatstat_model terra tidyr tidyselect]; }; geocmeans = derive2 { name="geocmeans"; version="0.3.4"; sha256="02h171flg295ixpgl2glav2ij0wbvy7kclazdlldw40461aar5nk"; depends=[dplyr fclust fmsb future_apply ggplot2 leaflet matrixStats plotly progressr Rcpp RcppArmadillo Rdpack reldist reshape2 sf shiny spdep terra tmap]; }; geodaData = derive2 { name="geodaData"; version="0.1.0"; sha256="003m5wff0q4fdlg64qispmhj2aw83isxg3ijxwkwhvi33bpwpq4z"; depends=[]; }; geodata = derive2 { name="geodata"; version="0.5-9"; sha256="052gwxl3b0xb93s2b8755cmyxsyk0gy8c25v0hj81cwypnfykbhs"; depends=[terra]; }; - geodimension = derive2 { name="geodimension"; version="1.0.1"; sha256="0gg6xwkbfmmlaqc08ismg9d0yhif9167x6y2zbhsim9pdp01b4q9"; depends=[dplyr generics rlang sf snakecase tibble tidyselect]; }; + geodimension = derive2 { name="geodimension"; version="2.0.0"; sha256="1bx948hwy1c2src03vwvb29plzihqvsq92mbgg396xda560kxpfd"; depends=[dplyr sf snakecase tibble tidyselect]; }; geodist = derive2 { name="geodist"; version="0.0.8"; sha256="09758v53r057rjsn844g2dc455ccndw1qlndl1xsm2gcp6ch2hr3"; depends=[]; }; geodiv = derive2 { name="geodiv"; version="1.1.0"; sha256="0580q71m71xd0kn9z8l536ypl31gx4fyw6cn1nc03sazrdilkz8r"; depends=[dplyr e1071 pracma Rcpp RcppArmadillo rlang sf spatial terra zoo]; }; geodrawr = derive2 { name="geodrawr"; version="2.0.0"; sha256="05irfyfpk5lgsh0wax8dqdyfw4prynxz1bhs9k1nrz8yn2dd0imn"; depends=[leaflet sf shiny shinydashboard]; }; geoelectrics = derive2 { name="geoelectrics"; version="0.2.2"; sha256="1zxikh4jj750grpnaazqm51q7yp5df5a77kljvmim4nazzrsyrpg"; depends=[fields lattice rgl]; }; - geofacet = derive2 { name="geofacet"; version="0.2.0"; sha256="1aylx2hwqk75y73az1zf0s5mjww77d7i9kafbkzw383f0i5qx42w"; depends=[geogrid ggplot2 ggrepel gridExtra gtable imguR rnaturalearth sf sp]; }; + geofacet = derive2 { name="geofacet"; version="0.2.1"; sha256="1bj201afh7df3smgmllglmgs7bkkc1k1arvjr7kwn1cnn67b3mzj"; depends=[geogrid ggplot2 ggrepel gridExtra gtable imguR rlang rnaturalearth sp]; }; geofd = derive2 { name="geofd"; version="2.0"; sha256="1rsgy4nxfp1gi4vwh8zfzksr6sr2ga31kmd56q5m56gw530570ra"; depends=[fda]; }; - geofi = derive2 { name="geofi"; version="1.0.9"; sha256="0z5cisrfq18arsq8n4p8xiqc8z2wn8riz8l9s5lzihc50s87kh9p"; depends=[curl dplyr httpcache httr purrr rlang sf xml2 yaml]; }; - geogenr = derive2 { name="geogenr"; version="1.0.1"; sha256="1ji542incj05602iic9wzmrw8v122zxnpvvkvm1vax2j5ryj644j"; depends=[data_table dplyr geomultistar httr sf snakecase starschemar stringr tibble tidyr tidyselect tm]; }; + geofi = derive2 { name="geofi"; version="1.0.11"; sha256="1jfqwr2gw0h7i58lwsvpmxd0kacazn1sk0jp95f9srdisvkb4l67"; depends=[curl dplyr httpcache httr purrr rlang sf xml2 yaml]; }; + geogenr = derive2 { name="geogenr"; version="2.0.1"; sha256="17jg4mvwfaayda4igx4qigk83xbvn5s05y82393abwjiakp14lvi"; depends=[dplyr geomultistar httr readr rolap sf stringr tibble tidyr tidyselect]; }; geogrid = derive2 { name="geogrid"; version="0.1.2"; sha256="0jqqv5agnw071ysrmwz5r2z76f80rzm5bfl5g23gq1mbw85x8z8m"; depends=[Rcpp RcppArmadillo sf sp]; }; - geohabnet = derive2 { name="geohabnet"; version="1.0.0"; sha256="1qd40043x64505slv6w6lcl955awi62gkg2csld0ckyzrr5ykbc4"; depends=[beepr config easycsv geodata geosphere igraph memoise rlang rnaturalearth stringr terra viridisLite yaml]; }; + geohabnet = derive2 { name="geohabnet"; version="1.0.1"; sha256="1xms1w8qlw54cgb65hnspyzvb8j4ixl67clqav1bwv18a72idgr6"; depends=[beepr config easycsv geodata geosphere igraph memoise rlang rnaturalearth stringr terra viridisLite yaml]; }; geohashTools = derive2 { name="geohashTools"; version="0.3.3"; sha256="04hvlxq5fm4mcrlbx09j079522qhlyg4jg6dymwkmqxrwdibcnqq"; depends=[]; }; geojson = derive2 { name="geojson"; version="0.3.5"; sha256="0aj00zy603w03y36r2x8gvnya9c2xl73pnvi3wy5xky9kmbwh9g4"; depends=[jqr jsonlite lazyeval magrittr protolite sp]; }; geojsonR = derive2 { name="geojsonR"; version="1.1.1"; sha256="0l4zwyf3f827jpwbsv097d0h8i7pjwpkvdr89hc6vv9pzavfymhp"; depends=[R6 Rcpp RcppArmadillo]; }; @@ -10387,11 +10578,11 @@ in with self; { geomod = derive2 { name="geomod"; version="0.1.0"; sha256="06a211cyhcicy5arpjxiglami56plkm6ybxbzbmjd0z6yn9yyd38"; depends=[arm caret Cubist e1071 kernlab nnet qrnn quantregForest randomForest ranger raster rasterVis rpart sp]; }; geomorph = derive2 { name="geomorph"; version="4.0.6"; sha256="198ah0xin7xwkjcag74rrjlmaqsz253lm1n07010ffbn01f2cg58"; depends=[ape ggplot2 jpeg Matrix rgl RRPP]; }; geomtextpath = derive2 { name="geomtextpath"; version="0.1.1"; sha256="0i5m1v8mn23krp7ha502v3kv5wpwdy8na4x3nqlg3zld293dybz4"; depends=[ggplot2 rlang scales systemfonts textshaping]; }; - geomultistar = derive2 { name="geomultistar"; version="1.1.1"; sha256="1zxh7iv4qrkyj6wqd3fd709fvycsa3bjmpyy8kqvd44blm78bx2n"; depends=[dplyr rlang RSQLite sf starschemar tibble tidyr tidyselect]; }; + geomultistar = derive2 { name="geomultistar"; version="1.2.1"; sha256="00fkrbsi4gw7jkvfwwxnxxq9fbbkl6i2n5wmpzglwiy21y74y6pn"; depends=[dplyr generics purrr rlang RSQLite sf tibble tidyr tidyselect]; }; geonames = derive2 { name="geonames"; version="0.999"; sha256="0yz1b7y3vwa4izrhpry4n3iwzb7y67s5p3kgnd7d29cl5pcbpmqx"; depends=[rjson]; }; geonapi = derive2 { name="geonapi"; version="0.7"; sha256="0d9l5xv3in016g93apql7dgxndrcygj9r7c6hmx2wqqi53rdkngd"; depends=[geometa httr keyring openssl R6 XML]; }; geonetwork = derive2 { name="geonetwork"; version="0.5.0"; sha256="0yg6pp2ya62qws6jdjxmhqjh5gdn4cfm6zbljazc35xf7d97jjnx"; depends=[geosphere igraph sf]; }; - geos = derive2 { name="geos"; version="0.2.3"; sha256="1c4g3gxri1ql3ycfvk70v7zp0hzv9yrd5qdwzb3v0vsc4hcxppq1"; depends=[libgeos wk]; }; + geos = derive2 { name="geos"; version="0.2.4"; sha256="03cxm9rby7qmk9apqk3sh373rnzqcrj23cn6q153gq93lx372b8n"; depends=[libgeos wk]; }; geosapi = derive2 { name="geosapi"; version="0.6-7"; sha256="1cxjg9zg4ayli18rx0wdr709fi67xvqg56z41r3j13235qbnrqjb"; depends=[httr keyring openssl R6 readr XML]; }; geoscale = derive2 { name="geoscale"; version="2.0.1"; sha256="1ykzxbwjdy0xi5hj5r201j3wrgahcxvxrgp40mqlw7zj80wgdgif"; depends=[]; }; geosed = derive2 { name="geosed"; version="0.1.1"; sha256="07j4q6sgrf83h2gi2j5qap5rifz8gimdacd3b7ld1p3b6ai6kv3r"; depends=[]; }; @@ -10400,18 +10591,18 @@ in with self; { geosphere = derive2 { name="geosphere"; version="1.5-18"; sha256="1h6sqvxwxv22js6hz4s8sjk50ygw0y34icbbbdb2v36ca3q6zzwr"; depends=[Rcpp sp]; }; geospt = derive2 { name="geospt"; version="1.0-3"; sha256="1ap7fcxh95si8mifcykxfk2q2bnpdr397w9gj0inm2zqzv616rib"; depends=[fields genalg gsl gstat limSolve MASS minqa plyr sgeostat sp TeachingDemos]; }; geosptdb = derive2 { name="geosptdb"; version="1.0-1"; sha256="1n1jvigavcxlbc5wki74lnhax3060i44m1cvkcr664wsjqhx3kl2"; depends=[FD fields geospt gsl limSolve minqa sp StatMatch]; }; - geostan = derive2 { name="geostan"; version="0.5.2"; sha256="12jw7v4c5amrh8f6vb7c3vv1zvr591krvz7bz55kwa7p1972zbnz"; depends=[BH ggplot2 gridExtra MASS Matrix Rcpp RcppEigen RcppParallel rstan rstantools sf signs spdep StanHeaders truncnorm]; }; + geostan = derive2 { name="geostan"; version="0.5.3"; sha256="1h2vrdx43lji2n67dx4r6qcsy0qb30z0dyivmy1bqqw41a0hcf6z"; depends=[BH ggplot2 gridExtra MASS Matrix Rcpp RcppEigen RcppParallel rstan rstantools sf signs spdep StanHeaders truncnorm]; }; geostats = derive2 { name="geostats"; version="1.6"; sha256="0fmp6883a3xqay3wcc3bz7czhyik1mki3zn5z195iag11yvc5wr6"; depends=[]; }; - geostatsp = derive2 { name="geostatsp"; version="2.0.1"; sha256="0sd24fc5896xi5wijj3zhmkzq8rspnv9xcf6yc268f4cfzdwpzkc"; depends=[abind Matrix numDeriv terra]; }; + geostatsp = derive2 { name="geostatsp"; version="2.0.3"; sha256="1xmnc33mw9dy991b4f72jbcd7bvpmw3ngfq7159lcfnbk7lgmhvv"; depends=[abind Matrix numDeriv terra]; }; geotools = derive2 { name="geotools"; version="0.1"; sha256="0d0vf9dvrrv68ivssp58qzaj8vra26ms33my097jmzmgagwy1spd"; depends=[]; }; - geotopbricks = derive2 { name="geotopbricks"; version="1.5.6.0"; sha256="0s0rdbnhj3vr4n7bp4vy87pvr1xghw62ymr5nmaypk4wv3jgxlcv"; depends=[raster sf stringr terra zoo]; }; + geotopbricks = derive2 { name="geotopbricks"; version="1.5.8.0"; sha256="1s0grxmg9sfxlys9rl0qhddmxqc2i916pdynxbib9byswzshkp5r"; depends=[raster sf stringr terra zoo]; }; geouy = derive2 { name="geouy"; version="0.2.8"; sha256="02x52fid3pmaaj22b729zvrh8giwb2a4az66xxwp0lw03pf188zi"; depends=[assertthat curl dplyr fs ggplot2 ggspatial ggthemes glue magrittr raster rjson rlang sf sp stringr tidyselect viridis]; }; geovol = derive2 { name="geovol"; version="1.0"; sha256="13ll9jyh1fadm2rpfvja0fnqnpr6haivz1vmmpi6yc95rpl4234b"; depends=[zoo]; }; geozoo = derive2 { name="geozoo"; version="0.5.1"; sha256="0g91yhg7zw1bp0lxxblr2irckjg2rl4pg1vgglccnmxkzn0ji2qi"; depends=[bitops]; }; gepaf = derive2 { name="gepaf"; version="0.1.1"; sha256="0n36w40jrq3qkgmhz9wrnhp6fczw7bm96g950sa4nq33872xhfgm"; depends=[bitops]; }; gerbil = derive2 { name="gerbil"; version="0.1.9"; sha256="1ra1piza922sigxk61v55dbpkmzha716drmb6m1qxn892vykmm8w"; depends=[DescTools lattice MASS mvtnorm openxlsx pbapply truncnorm]; }; germinationmetrics = derive2 { name="germinationmetrics"; version="0.1.8"; sha256="1lssjs9rp09l9draylrkslb74apizbanacgp00yyxhgxa39dk2g6"; depends=[broom data_table ggplot2 ggrepel gslnls mathjaxr plyr Rdpack]; }; - gert = derive2 { name="gert"; version="2.0.0"; sha256="14b3bppid65jpzxrc7ddvvyr2qafv08z75v19rvfiv7780vpq53w"; depends=[askpass credentials openssl rstudioapi sys zip]; }; + gert = derive2 { name="gert"; version="2.0.1"; sha256="14nh7j0xz1s4ngsd5n3hixr534z843a38y57grwqkkh9g21q9mqf"; depends=[askpass credentials openssl rstudioapi sys zip]; }; gesisdata = derive2 { name="gesisdata"; version="0.1.2"; sha256="1cabgmprwlwn09hd1jd9hvj50bqaarxyajz251l0vv2qb3d5l11a"; depends=[dplyr foreign magrittr netstat rio RSelenium stringr]; }; geslaR = derive2 { name="geslaR"; version="1.0-1"; sha256="05dswf8c10vwhswsgdpzkqlhbazrw8bd62ndk768lw31fj1n0cab"; depends=[arrow cli dplyr]; }; gesso = derive2 { name="gesso"; version="1.0.2"; sha256="0i7a927mbll8mlisxb0ic62fvq1wp5v0m69n7zkhcjabkxr7gbn3"; depends=[BH bigmemory dplyr Matrix Rcpp RcppEigen RcppThread]; }; @@ -10420,10 +10611,10 @@ in with self; { gesttools = derive2 { name="gesttools"; version="1.3.0"; sha256="1lrjr60vrl0j31hb12i8c78k5554vwpgj8pzzrhbdhmb6y0972fx"; depends=[DataCombine geeM magrittr nnet rsample testthat tibble tidyr tidyselect]; }; getDTeval = derive2 { name="getDTeval"; version="0.0.2"; sha256="16y24jhy9k1adlmf6yqzc8kla2vw7r0c6zd52jpfkiljxwkm4634"; depends=[data_table formulaic microbenchmark]; }; getLattes = derive2 { name="getLattes"; version="0.2.0"; sha256="1rrd9x9jmnsy0770c86lqws4a6b2zxf3384h1dcvzrmlk20hhqxw"; depends=[dplyr janitor pipeR purrr rlang tibble xml2]; }; - getPass = derive2 { name="getPass"; version="0.2-2"; sha256="03ydafhh0sk3rcnpr3paajyji64x2ddp6p814p9mvbmyrblcgzcc"; depends=[rstudioapi]; }; + getPass = derive2 { name="getPass"; version="0.2-4"; sha256="0a0q9v29z49s1iprs5di01wlflxj74sbizwsrzjfc538nkwfpnqm"; depends=[rstudioapi]; }; getProxy = derive2 { name="getProxy"; version="1.13"; sha256="0n8ja0i1v0cd2piqyx4hfc4qw18d535j3ffpz164c3r8cmppnqzd"; depends=[cli httr]; }; getable = derive2 { name="getable"; version="1.0.3"; sha256="0v45nqpx55vbj68gj4wxr0bdlrl897ayac78rxjd2lkkjx49hlyh"; depends=[knitr]; }; - getip = derive2 { name="getip"; version="0.1-3"; sha256="096cycq9w197didbq0zxmsagrlbl1vgb7rv13n32sgyw15rngh8f"; depends=[]; }; + getip = derive2 { name="getip"; version="0.1-4"; sha256="0qyld6sy1i7kmbvcyg3vdv31qdyj81n54v6gvknb7nrqwwl8bgv3"; depends=[]; }; getmstatistic = derive2 { name="getmstatistic"; version="0.2.2"; sha256="100m5cbwx9anlh1hzjv7d1h1viqsxb0bx0ksc1dsjx3gqrf77q1n"; depends=[ggplot2 gridExtra gtable metafor psych stargazer]; }; getopt = derive2 { name="getopt"; version="1.20.4"; sha256="12qy48adnibfi9rpv5qd8k3hipbc4q85514dsz0xnhdsdnz6rlw7"; depends=[]; }; gets = derive2 { name="gets"; version="0.37"; sha256="1h7hn8n08sqnygbzyiq9zg11b5i9g6islc72c0qypx4j4wba5z55"; depends=[zoo]; }; @@ -10453,15 +10644,16 @@ in with self; { ggFishPlots = derive2 { name="ggFishPlots"; version="0.2.2"; sha256="1zp4g29p15ac0g8cywhsagsxkagvah4xwfhv8j9djkbi7ijdx8fq"; depends=[broom dplyr fishmethods ggplot2 ggrepel ggridges magrittr rlang tibble tidyr tidyselect]; }; ggHoriPlot = derive2 { name="ggHoriPlot"; version="1.0.1"; sha256="1sb567qrqawks9z4zhlfgyx6pcgsvhki3rafppj969xzjh59w6b7"; depends=[dplyr ggplot2 glue magrittr stringr tidyr]; }; ggOceanMaps = derive2 { name="ggOceanMaps"; version="2.1.1"; sha256="1sshlsb91x6j4iyhbvdpps8lp4p9kxfdb79v0incnh4l8p48hqzk"; depends=[ggplot2 sf smoothr stars units]; }; - ggPMX = derive2 { name="ggPMX"; version="1.2.10"; sha256="1wlix6dr1d631qdckalzk8h6m6c8rbji0dvvr7aghq814mahw1p2"; depends=[assertthat checkmate data_table dplyr GGally ggforce ggplot2 gtable knitr magrittr purrr R6 readr rlang rmarkdown scales stringr tidyr yaml zoo]; }; + ggPMX = derive2 { name="ggPMX"; version="1.2.11"; sha256="04381iaa52ljpkbi4sy5xgyiv0vznd2k7vnwvsdyk4qkggxxyqw9"; depends=[assertthat checkmate data_table dplyr GGally ggforce ggplot2 gtable knitr magrittr purrr R6 readr rlang rmarkdown scales stringr tidyr yaml zoo]; }; ggQC = derive2 { name="ggQC"; version="0.0.31"; sha256="1j9cs97hcj5zmqvn5rjr3gl0b9748s3pv2nb7v66dsyjdwvj7wyy"; depends=[dplyr ggplot2 tidyr]; }; ggQQunif = derive2 { name="ggQQunif"; version="0.1.5"; sha256="0vrxmqxy946mwdq0mb2m1ch41r0chrw7hcn18dr3mp10bv7pl7wj"; depends=[dplyr ggplot2 scales]; }; ggRandomForests = derive2 { name="ggRandomForests"; version="2.2.1"; sha256="05w1rs0mg2nj5j1rd32s1mcj294p4zm24p2d87535rmslqmya9c7"; depends=[ggplot2 randomForest randomForestSRC survival tidyr]; }; ggResidpanel = derive2 { name="ggResidpanel"; version="0.3.0"; sha256="1vsjw229pd36100ix1sgfmk5lb9b0fx3l6pxg1irsfhm2ypbg1ig"; depends=[cowplot ggplot2 MASS plotly qqplotr stringr]; }; ggRtsy = derive2 { name="ggRtsy"; version="0.1.0"; sha256="04q9674z0wgpd5igjhggih348jd6lv6nbwz4na597pn5d3pirhvl"; depends=[dplyr ggplot2 magrittr purrr stringr tibble]; }; + ggScatRidges = derive2 { name="ggScatRidges"; version="0.1.0"; sha256="02p9pkfw3jscmc5c836qq73z9jpyxv4fp1ci5ma6mcwyzzzfnjpc"; depends=[cowplot ggplot2 ggpubr ggridges hrbrthemes viridis]; }; ggThemeAssist = derive2 { name="ggThemeAssist"; version="0.1.5"; sha256="1biw91a8p13h62v4w3yim6ghr98khmyhb3qd0h04asf91vvmpxbv"; depends=[formatR ggplot2 miniUI rstudioapi shiny]; }; ggTimeSeries = derive2 { name="ggTimeSeries"; version="1.0.2"; sha256="0sd39svwi3ai81szahd49a8qvsydi1922z4q6r2r70fpbfwi4qrq"; depends=[data_table ggplot2]; }; - ggVennDiagram = derive2 { name="ggVennDiagram"; version="1.2.3"; sha256="083qr0qd3333qmr42v9k0r0sq5842cca83p87h5gikk8v1vljv7j"; depends=[dplyr ggplot2 magrittr plotly purrr RVenn sf tibble yulab_utils]; }; + ggVennDiagram = derive2 { name="ggVennDiagram"; version="1.4.9"; sha256="1nf4prkpciy1q1ix7chy0ymk5d3dlxxb53c29pg6yjp3py0hiw2h"; depends=[aplot dplyr forcats ggplot2 tibble tidyr]; }; ggaligner = derive2 { name="ggaligner"; version="0.1"; sha256="1b2fk8bxj4y8an7higv6251fvba748j8x6j7cqqdznmk9az86g01"; depends=[ggmsa ggplot2 reshape2]; }; ggalignment = derive2 { name="ggalignment"; version="1.0.1"; sha256="1rqndv1xqz350v6a23pfrl4zkwjyh4zg633kwcxnv57v0g01mmif"; depends=[dplyr ggimage ggplot2 magrittr rlang]; }; ggallin = derive2 { name="ggallin"; version="0.1.1"; sha256="0hrxa7m07ppvnndivxcgxksdyblb6fw17aw46maqavlvcrz3fjgm"; depends=[ggplot2 scales]; }; @@ -10472,7 +10664,8 @@ in with self; { ggarchery = derive2 { name="ggarchery"; version="0.4.2"; sha256="1vbknccfr18gawia353appvj3fc3ic8wrkgg0rd2aiz48av496yz"; depends=[dplyr ggplot2 glue magrittr purrr rlang tidyr]; }; ggautomap = derive2 { name="ggautomap"; version="0.3.2"; sha256="0fy1saym15l3d76ix26kz9il3nzsypchh028vigcvan7g0yg7168"; depends=[cartographer cli dplyr ggmapinset ggplot2 packcircles rlang sf tidyr vctrs]; }; ggbeeswarm = derive2 { name="ggbeeswarm"; version="0.7.2"; sha256="1rcw54isai05np4fj19vcxx2vcxq7y2nm3az9m8xwbc9pdjs4z7x"; depends=[beeswarm cli ggplot2 lifecycle vipor]; }; - ggblanket = derive2 { name="ggblanket"; version="5.1.0"; sha256="1dj9gri6h0fy5izr8g128ghx4lsbknflfflmpv3z1a4y6g962yb1"; depends=[dplyr forcats ggplot2 hms lubridate magrittr purrr rlang scales snakecase stringr tidyr tidyselect viridis]; }; + ggbiplot = derive2 { name="ggbiplot"; version="0.6.2"; sha256="0ys4l5fhy1p1ys3q7012vxafmfrzaqlvnzmkmv32zar32j3hvmkc"; depends=[ggplot2 scales]; }; + ggblanket = derive2 { name="ggblanket"; version="5.2.0"; sha256="1rkbh5gf8wynhsn4x8jhw78ppsiyvmwim7pjpa46vd5iwhqiynyq"; depends=[dplyr forcats ggplot2 hms lubridate magrittr purrr rlang scales snakecase stringr tidyr tidyselect viridisLite]; }; ggblend = derive2 { name="ggblend"; version="0.1.0"; sha256="0wzy9lnvqxjl3511vk1y6nxpvhk9hvk1xq18bbwsv6886npls56z"; depends=[ggplot2 rlang]; }; ggborderline = derive2 { name="ggborderline"; version="0.2.0"; sha256="1acb3z2dwasmn4ngc7wqk3y4n34ah3fhdxsbdl3dmbc75nmdsn5a"; depends=[cli ggplot2 rlang vctrs]; }; ggbrain = derive2 { name="ggbrain"; version="0.8.1"; sha256="1nicqirp69k0ish7j3mr7zz82w2lj5jcvmn7cbx764r62s5pscvd"; depends=[checkmate data_table dplyr ggnewscale ggplot2 ggrepel glue imager Matrix patchwork Rcpp RcppArmadillo rlang RNifti tibble tidyr tidyselect]; }; @@ -10484,25 +10677,24 @@ in with self; { ggcleveland = derive2 { name="ggcleveland"; version="0.1.0"; sha256="1pl9qhj7p5kflx0ni59hq1k9afqchghg5wig9v1ml5pqrjz70pxa"; depends=[dplyr egg ggplot2 lattice magrittr readr rlang stringr tibble tidyr vctrs]; }; ggcorrplot = derive2 { name="ggcorrplot"; version="0.1.4.1"; sha256="0yd865lfs4144jqh9ilznqa69rj0183ashnhvmjmis87zw69a45q"; depends=[ggplot2 reshape2]; }; ggcorset = derive2 { name="ggcorset"; version="0.4.5"; sha256="18i7xj3h0v556y2m7b1cnlqhzfp9jv5gpchhz5rmm8d6y3k4czii"; depends=[dplyr gghalves ggplot2 ggstance]; }; - ggcoverage = derive2 { name="ggcoverage"; version="0.7.1"; sha256="088gyc6054d8xx3k3pg5i40cnvyryyq4k6rn214li0yslj3fphyi"; depends=[Biostrings BSgenome dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggbio ggh4x ggplot2 ggrepel IRanges magrittr patchwork RColorBrewer reshape2 rlang Rsamtools rtracklayer S4Vectors scales seqinr]; }; ggdag = derive2 { name="ggdag"; version="0.2.10"; sha256="1vn93yys6lnv0nrhxhnfjb6p12wzhkc9dx8fxn7jci1zyqkb5kb6"; depends=[dagitty dplyr forcats ggplot2 ggraph ggrepel igraph magrittr pillar purrr rlang stringr tibble tidygraph]; }; ggdark = derive2 { name="ggdark"; version="0.2.1"; sha256="1w93g2j4g45x9s841v9zi18lxzda81ipa13fajqc6p9xk8frvgrf"; depends=[ggplot2]; }; ggdemetra = derive2 { name="ggdemetra"; version="0.2.6"; sha256="0faxbb05wl3075n21nr3b6jqjyh332fy05r4vk3jy0w9qs15ih0p"; depends=[ggplot2 ggrepel gridExtra RJDemetra]; }; ggdendro = derive2 { name="ggdendro"; version="0.1.23"; sha256="1f4fz9llmbpb8gh90aid7dvriadx16xdhsl7832yw4pyqj4fjcrs"; depends=[ggplot2 MASS]; }; ggdensity = derive2 { name="ggdensity"; version="1.0.0"; sha256="01ym1af6w39zg6xh5mls8kwl4mg0lpjd94j0hm2xrgl39llpwx6r"; depends=[ggplot2 isoband MASS scales tibble vctrs]; }; - ggdist = derive2 { name="ggdist"; version="3.3.0"; sha256="0b15b972wrllsvqqn0nc2c81fd9jl618fvqsfi50hjxwwpdach8l"; depends=[cli distributional dplyr ggplot2 glue numDeriv quadprog rlang scales tibble tidyselect vctrs withr]; }; + ggdist = derive2 { name="ggdist"; version="3.3.1"; sha256="0agr1l65s7vimdb88a7n3ahr6pp9ng5zf9mypdic26vhaaifh1b7"; depends=[cli distributional dplyr ggplot2 glue numDeriv quadprog Rcpp rlang scales tibble tidyselect vctrs withr]; }; ggdmc = derive2 { name="ggdmc"; version="0.2.6.0"; sha256="1gncv7npl548k3zd41x2gwg5qywn5rp6zb4i7ga78sy77mvi3x92"; depends=[coda data_table ggplot2 matrixStats Rcpp RcppArmadillo]; }; gge = derive2 { name="gge"; version="1.8"; sha256="1c8f8g4nw245cjxpx3fjw03cgwc1q13k9ly9jx1jcc6k6hsdkx9k"; depends=[nipals reshape2]; }; ggeasy = derive2 { name="ggeasy"; version="0.1.4"; sha256="1dppcffkyr6ybpz17zkq97g0p2hs1f8iwg6vwrw124pbgr065dr0"; depends=[ggplot2 rlang]; }; ggedit = derive2 { name="ggedit"; version="0.3.1"; sha256="10fbjqq6l7wfibi65mq423w7v8gymr541if749qhsnd9b2jyhaj5"; depends=[colourpicker dplyr ggplot2 magrittr miniUI plyr purrr rlang rstudioapi scales shiny shinyAce shinyBS tidyr]; }; - ggeffects = derive2 { name="ggeffects"; version="1.3.2"; sha256="1wp9q2zqygxg2ibmrwdh614sdxqhj80rx0ixbz8kxld99b37ixl7"; depends=[insight]; }; - ggenealogy = derive2 { name="ggenealogy"; version="1.0.1"; sha256="19six9ln1yaqv268abm9qvb61nl8zdz3gghwr8hmwsa94xwhzhkq"; depends=[ggplot2 igraph plotly plyr reshape2 tibble]; }; + ggeffects = derive2 { name="ggeffects"; version="1.3.4"; sha256="0hxcal1rldi3295hy5n1nzad092gis1cxnjsbbhfrbj3z35aacbs"; depends=[insight]; }; ggetho = derive2 { name="ggetho"; version="0.3.7"; sha256="0bdqx3x42jp22bs297nhdgzvywhq4cy0lwmwprl7vmjjh8lwvkxk"; depends=[behavr cli data_table ggplot2 labeling rlang scales stringr]; }; ggfittext = derive2 { name="ggfittext"; version="0.10.1"; sha256="1z06q55igv6nibc72hll93cpp80mfg3yqfqbi967832nfj7wll7a"; depends=[ggplot2 gridtext shades stringi]; }; + ggfixest = derive2 { name="ggfixest"; version="0.1.0"; sha256="0i05lvm45kp8l2shxlznlk5yw96rzcilwmm9i9194x0zxz29q5nf"; depends=[dreamerr fixest ggh4x ggplot2 marginaleffects scales]; }; ggflowchart = derive2 { name="ggflowchart"; version="1.0.0"; sha256="0n93ydnj4q95a67ch2i3yjg7f05vi2xdb4jss620ccaj33chwqzv"; depends=[dplyr ggplot2 igraph rlang tibble tidyr]; }; ggfocus = derive2 { name="ggfocus"; version="1.0.0"; sha256="03q0rz7flm8sc8hrlkcm5fz66qiyxb8z8q4bh9dglhw0jc8q1fvb"; depends=[dplyr ggplot2 magrittr RColorBrewer rlang]; }; ggforce = derive2 { name="ggforce"; version="0.4.1"; sha256="0wqq8l7lq96k4w0vq12jcg7clvgia8s35jjbqq1s0py4cgxijhml"; depends=[cli ggplot2 gtable lifecycle MASS polyclip Rcpp RcppEigen rlang scales systemfonts tidyselect tweenr vctrs withr]; }; - ggformula = derive2 { name="ggformula"; version="0.10.4"; sha256="07d9sq0dqi0g5x9h58icfk1f4hgg1xz4mhbp2z2rxg9qgs74fvdj"; depends=[ggforce ggplot2 ggridges ggstance labelled magrittr mosaicCore rlang scales stringr tibble]; }; + ggformula = derive2 { name="ggformula"; version="0.12.0"; sha256="0vbpivyxms46px3wqkbl1wq199mqdxq94gsiplv4i7lz0lzghsfm"; depends=[ggplot2 ggridges labelled mosaicCore rlang scales stringr tibble]; }; ggfortify = derive2 { name="ggfortify"; version="0.4.16"; sha256="05h3a4ycain0y621anjpjphsjlhpayb2nnd6n70rlymrbilfw6xv"; depends=[dplyr ggplot2 gridExtra scales stringr tibble tidyr]; }; ggfun = derive2 { name="ggfun"; version="0.1.3"; sha256="1jk94qridy587dnw3j97k73wa02vs3vcfrjgrri35kvv7fkjw8w9"; depends=[cli ggplot2 rlang]; }; ggfx = derive2 { name="ggfx"; version="1.0.1"; sha256="1lys5lzlilzvd6dm7rkxv7nvnp80fajl5yzhpwcbb5az5832ik27"; depends=[ggplot2 gtable magick ragg rlang]; }; @@ -10511,13 +10703,13 @@ in with self; { ggghost = derive2 { name="ggghost"; version="0.2.1"; sha256="0kvsjadxxdf6yvzk4a6yqkg02q1ysslvf3m0a369bdim396z4hnv"; depends=[animation ggplot2]; }; gggibbous = derive2 { name="gggibbous"; version="0.1.1"; sha256="1sy9d9hl04b13yz4563bzsdznjdh3xmikdrsqg8kdv8wn481lqbd"; depends=[ggplot2 scales]; }; gggrid = derive2 { name="gggrid"; version="0.2-0"; sha256="0g8msi5qpnr2npcgjvdjncrq6p61ddpzasy5g0fxqbybbpfxsyi8"; depends=[ggplot2]; }; - ggh4x = derive2 { name="ggh4x"; version="0.2.6"; sha256="0frbkdylyz630y7rjyif0whf74r89ca5bmhk9djcwz8nqfs2jygb"; depends=[cli ggplot2 gtable lifecycle rlang scales vctrs]; }; + ggh4x = derive2 { name="ggh4x"; version="0.2.7"; sha256="114xvlpdhnsdnw1g89yls3z80dxcj9fah09kvfddhlwbqbknxjxf"; depends=[cli ggplot2 gtable lifecycle rlang scales vctrs]; }; gghalfnorm = derive2 { name="gghalfnorm"; version="1.1.2"; sha256="1sy0m6pqmnjbqv60rljyblhis0dxwkhw751jhlad5arcgrcwf4k8"; depends=[ggplot2 ggrepel]; }; gghalves = derive2 { name="gghalves"; version="0.1.4"; sha256="1qsxq2zbz4zcpqc7949apznn9f2c959jwwx010bl4gf2p6vchfx7"; depends=[ggplot2 gtable]; }; gghdr = derive2 { name="gghdr"; version="0.2.0"; sha256="1id0ky2mf656xqsmg76f627zw8iff4q1wzgih32nryk0hfvm2gfi"; depends=[digest farver ggplot2 hdrcde scales tibble]; }; gghdx = derive2 { name="gghdx"; version="0.1.1"; sha256="0f59yl8qcm5aframjjg57ikpn7ywr0pyfkzpcqa1b5yaf0831gp9"; depends=[dplyr ggplot2 ggthemes magrittr purrr rlang showtext sysfonts tibble]; }; ggheatmap = derive2 { name="ggheatmap"; version="2.2"; sha256="13cf3xk5drb6dfr3gcbgfi0hk6akk9b3g9f3c2jy6hz8rz5xnyn6"; depends=[aplot factoextra ggplot2 ggpubr patchwork tibble tidyr]; }; - gghighlight = derive2 { name="gghighlight"; version="0.4.0"; sha256="0vfcn3gg6j7g20n2z1iwr94jnpqn0zl5j9jfc8bnbsrmz49dzqpd"; depends=[dplyr ggplot2 ggrepel lifecycle purrr rlang tibble]; }; + gghighlight = derive2 { name="gghighlight"; version="0.4.1"; sha256="1lsvy9ha4d8zs927h8jbdj5r39xqcy1n6g5prw4awiihdvcv9v66"; depends=[dplyr ggplot2 ggrepel lifecycle purrr rlang tibble]; }; gghilbertstrings = derive2 { name="gghilbertstrings"; version="0.3.3"; sha256="0b3xp1w6fkkmjh7gihhfkp4npx553a75bvsal3w4j57xa34l8rap"; depends=[dplyr ggplot2 lifecycle magrittr Rcpp rlang tibble]; }; gghist = derive2 { name="gghist"; version="0.1.0"; sha256="0ncxx2ckc78gaa9dyddyli1wca7kkz33v13mplhnxd33gkk9pxmz"; depends=[ggplot2]; }; ggimage = derive2 { name="ggimage"; version="0.3.3"; sha256="0jm316dqnnnsifrwkh6q2xs07dqazaa77s713pr7h94q1r8ab1bs"; depends=[ggfun ggplot2 ggplotify jsonlite magick scales tibble withr]; }; @@ -10525,7 +10717,7 @@ in with self; { gginference = derive2 { name="gginference"; version="0.1.3"; sha256="1r960cglnkii8xih4r1r7wd857jqn53f08zi9dnj54bpqrs374zx"; depends=[ggplot2 rlang]; }; gginnards = derive2 { name="gginnards"; version="0.1.2"; sha256="1z4wbh4biywvxr29j1rll6h4yh3hlhrypa5903pmzvpgdy9n2baw"; depends=[ggplot2 magrittr rlang stringr tibble]; }; ggip = derive2 { name="ggip"; version="0.3.2"; sha256="0mg3p3lq3afw96ddk89v62jjd8ii7nhdcwlmdnmdxrw6awcmvyhk"; depends=[cli dplyr ggplot2 ipaddress Rcpp rlang tidyr vctrs]; }; - ggiraph = derive2 { name="ggiraph"; version="0.8.7"; sha256="0hg4wbgwlrib2zvrahmnsdixnyq2pi13liaz65zc8cg85mn2fr2n"; depends=[ggplot2 htmltools htmlwidgets purrr Rcpp rlang systemfonts uuid vctrs]; }; + ggiraph = derive2 { name="ggiraph"; version="0.8.8"; sha256="04waxpsqfmk21s2ibfn00n8zhj6cp6283cggz45n9cn4pwf75gw2"; depends=[ggplot2 htmltools htmlwidgets purrr Rcpp rlang systemfonts uuid vctrs]; }; ggiraphExtra = derive2 { name="ggiraphExtra"; version="0.3.0"; sha256="0q8ppixw5i1hpphmswpw6lvq7gx8rx4gfs2b8d31wbn32ziiv2rk"; depends=[dplyr ggiraph ggplot2 magrittr mgcv mycor plyr ppcor purrr RColorBrewer reshape2 scales sjlabelled sjmisc stringr tidyr]; }; ggisotonic = derive2 { name="ggisotonic"; version="0.1.2"; sha256="1jz1qhx51gzq6lbk24pjxc55nhzc6alsy9h870jn88mn9fpx4lhp"; depends=[dplyr fdrtool ggplot2]; }; ggjoy = derive2 { name="ggjoy"; version="0.4.1"; sha256="012md2m0jqfcccb933j423m3ck31v3p0pd41gjxpyg9082y7ixyj"; depends=[ggplot2 ggridges]; }; @@ -10534,14 +10726,13 @@ in with self; { gglm = derive2 { name="gglm"; version="1.0.2"; sha256="1wx1rmdms6rxhlb20623v3wr5l3w9xfk003sb1gi0418p3rhfx0v"; depends=[broom broom_mixed dplyr ggplot2 metafor nlme patchwork purrr rlang tibble tidyr vctrs]; }; gglorenz = derive2 { name="gglorenz"; version="0.0.2"; sha256="1kag8p2chd0sbn8affpxzi4aawpm71ls97dwdgx7mxxfwkdb2q0y"; depends=[ggplot2 ineq]; }; ggm = derive2 { name="ggm"; version="2.5"; sha256="11wc6k2kj2ydy0dyks5mbvbhxm1r43id87anl1jg6dn0yv4m78di"; depends=[graph igraph]; }; - ggmap = derive2 { name="ggmap"; version="3.0.2"; sha256="1bnwbk2z31xgxmvq2rawqz7dlbmc0nbhr4d4pmgimjnlbyby6pxs"; depends=[bitops cli digest dplyr ggplot2 glue httr jpeg magrittr plyr png purrr RgoogleMaps rlang scales stringr tibble tidyr]; }; + ggmap = derive2 { name="ggmap"; version="4.0.0"; sha256="1x9lqx0mizqiyxzgg8pgkbi8qmbn2a0zsq5r5riknvh6ghskkrhd"; depends=[bitops cli digest dplyr ggplot2 glue httr jpeg magrittr plyr png purrr rlang scales stringr tibble tidyr]; }; ggmapinset = derive2 { name="ggmapinset"; version="0.3.0"; sha256="1cakn2iqjk117ngb0ssc68hxx8s4mgc8z8bl6mfvwffvjsyjyxyp"; depends=[cli ggplot2 rlang sf]; }; ggmatplot = derive2 { name="ggmatplot"; version="0.1.2"; sha256="0k062kqa9hrq1iyjwjj670sdk559zx1nxpbkk0sxkda2h235lxjr"; depends=[ggplot2]; }; ggmcmc = derive2 { name="ggmcmc"; version="1.5.1.1"; sha256="1y6ya2qihm8h6ds84akhmsxn9c8jriw03wakaqzsmi21agz87n21"; depends=[dplyr GGally ggplot2 tidyr]; }; ggmice = derive2 { name="ggmice"; version="0.1.0"; sha256="14fb8889fqx3r0rky7rfnagfrrlhspj74zlp7wz7wj232y3j923h"; depends=[cli dplyr ggplot2 magrittr mice purrr rlang stringr tidyr tidyselect]; }; ggmix = derive2 { name="ggmix"; version="0.0.2"; sha256="158pzmr4vmy2qxmp3nrabjgkg11mrdvl1skzxgwida2is900f7gf"; depends=[glmnet MASS Matrix]; }; ggmosaic = derive2 { name="ggmosaic"; version="0.3.3"; sha256="1zm1zfbd0qk6icw65m9hz1hgyqj632ibq3qilidvx5jy7jh8nbpy"; depends=[dplyr ggplot2 ggrepel plotly productplots purrr rlang scales tidyr]; }; - ggmotif = derive2 { name="ggmotif"; version="0.2.1"; sha256="1pqkl5zw4v6b81nbxcrpz44sjs4j65iw23j9xiy4d7yqj1bx7604"; depends=[ape cowplot data_table dplyr ggplot2 ggsci ggseqlogo ggtree magrittr memes patchwork stringr tidyverse treeio universalmotif XML]; }; ggmr = derive2 { name="ggmr"; version="0.1.1"; sha256="0941rvh7m5knlhp0m0mhm4j8spmch0pyvwhzs3bycq3vzlvzv1w7"; depends=[MASS]; }; ggmuller = derive2 { name="ggmuller"; version="0.5.6"; sha256="069y6wf9lbkz32kmkrc61vjc0p9fpr5191103dvaz0nj6gpd686a"; depends=[ape dplyr ggplot2]; }; ggmulti = derive2 { name="ggmulti"; version="1.0.6"; sha256="0cynzl5aamm8ra6jz3j6n2frd680f35p3f38gcx12zsk1vzsl4fr"; depends=[cli dplyr ggplot2 tidyr]; }; @@ -10560,39 +10751,39 @@ in with self; { ggpattern = derive2 { name="ggpattern"; version="1.0.1"; sha256="1b9bfxlg64gr39bz58fp6jmg4nziwk8rk94rzpjsqhfhpwi2lrgr"; depends=[ggplot2 glue gridpattern rlang scales]; }; ggpcp = derive2 { name="ggpcp"; version="0.2.0"; sha256="1xkxsxnxcyy8rrazzbl38g405cxjjjz6a720cdm4bsk03q2q4rar"; depends=[assertthat dplyr ggplot2 rlang tibble tidyr tidyselect]; }; ggperiodic = derive2 { name="ggperiodic"; version="1.0.3"; sha256="03gsbdqqxi0j4slp61bzrn4m2sjhh9fvcy1a1h5vcg4ax233j270"; depends=[data_table dplyr ggplot2 sticky tidyselect]; }; - ggpicrust2 = derive2 { name="ggpicrust2"; version="1.7.2"; sha256="0yk62cc0vmv6dyfiwvvbgpsqlvp1cw61db60153xvzmcdvd077cl"; depends=[ALDEx2 aplot circlize DESeq2 dplyr edgeR GGally ggh4x ggplot2 ggprism lefser limma Maaslin2 metagenomeSeq MicrobiomeStat patchwork readr SummarizedExperiment tibble tidyr]; }; + ggpicrust2 = derive2 { name="ggpicrust2"; version="1.7.3"; sha256="0zjlsvzl2f74fvqw4ijnai23qwhlcpgd5p8z9dclnwnsgdbm6hcq"; depends=[ALDEx2 aplot circlize DESeq2 dplyr edgeR GGally ggh4x ggplot2 ggprism lefser limma Maaslin2 metagenomeSeq MicrobiomeStat patchwork readr SummarizedExperiment tibble tidyr]; }; ggpie = derive2 { name="ggpie"; version="0.2.5"; sha256="11c431ggrhyxiql1v9qajp568jri6hlp1kgl334j4f7sgyh73ng5"; depends=[dplyr ggnewscale ggplot2 ggrepel magrittr RColorBrewer rlang scales stringr tibble]; }; - ggplate = derive2 { name="ggplate"; version="0.0.1"; sha256="0jn23hmh68hfz1i2h4vz80avzdrn05w6c9ifxfj8jhgh7dj974hf"; depends=[dplyr farver forcats ggplot2 purrr rlang scales stringr tidyr]; }; + ggplate = derive2 { name="ggplate"; version="0.1.1"; sha256="1a6c0f671i5368hpc3ilmzpx2vkdmxrzzgbbxpbhkhpz8cl6z311"; depends=[dplyr farver forcats ggplot2 purrr rlang scales stringr tidyr]; }; ggplot_multistats = derive2 { name="ggplot.multistats"; version="1.0.0"; sha256="1afzfa86vc484bcwpg7m1ky03jpax584rigzgai8w06pifkmz0il"; depends=[ggplot2 hexbin rlang scales]; }; ggplot2 = derive2 { name="ggplot2"; version="3.4.4"; sha256="0iiywrzv8j0npasvzgkxwhw0zqisf4xmpx06jl0lsq1ybl3fqxid"; depends=[cli glue gtable isoband lifecycle MASS mgcv rlang scales tibble vctrs withr]; }; - ggplot2_utils = derive2 { name="ggplot2.utils"; version="0.3.0"; sha256="1bs2pmnq7b57cs05rqvpaqjpn9k7m3zaz7nw3s2n7d9cq60w06gn"; depends=[checkmate EnvStats GGally ggplot2 ggpp survival]; }; + ggplot2_utils = derive2 { name="ggplot2.utils"; version="0.3.1"; sha256="0fsardsv77rfm2idynqi5zb3wrqcjyckxxchvj894kgb1qfpa27v"; depends=[checkmate EnvStats ggplot2 ggpp ggstats survival]; }; ggplot2movies = derive2 { name="ggplot2movies"; version="0.0.1"; sha256="067ld6djxcpbliv70r2c1pp4z50rvwmn1xbvxfcqdi9s3k9a2v8q"; depends=[]; }; ggplotAssist = derive2 { name="ggplotAssist"; version="0.1.3"; sha256="1g0s1dkbrxmwqjqppagdbnx24s0nbjn09xwxix3dkfssz6drhala"; depends=[dplyr editData gcookbook ggplot2 ggthemes magrittr miniUI moonBook rstudioapi scales shiny shinyAce shinyWidgets stringr tibble tidyverse]; }; ggplotgui = derive2 { name="ggplotgui"; version="1.0.0"; sha256="1yfglg5438mwyml845isimzma5q6824x19jka509ng49bzmf1za0"; depends=[ggplot2 haven plotly RColorBrewer readr readxl shiny stringr]; }; ggplotify = derive2 { name="ggplotify"; version="0.1.2"; sha256="11qfk4pj0bb013m9964q2fsrj4x39c4kwh84vfyi3qhlkrsybfh1"; depends=[ggplot2 gridGraphics yulab_utils]; }; ggplotlyExtra = derive2 { name="ggplotlyExtra"; version="0.0.1"; sha256="1m2rhylpzj934gb50lxjp47rxz0kwl9i1p3n7w1rz4qi96pr5p1c"; depends=[ggplot2 plotly rlang]; }; - ggpmisc = derive2 { name="ggpmisc"; version="0.5.4-1"; sha256="0f6n48vnqnqqd7xhb4mdcwy4h9wz0icnynjigcbzagrrxmi2r64x"; depends=[confintr dplyr generics ggplot2 ggpp lmodel2 lubridate MASS multcomp multcompView plyr polynom quantreg rlang scales splus2R tibble]; }; + ggpmisc = derive2 { name="ggpmisc"; version="0.5.5"; sha256="1j49q1fbihxir5q5llqwyga111j3lggifzjk3cvq8lphim4c3jia"; depends=[confintr dplyr generics ggplot2 ggpp lmodel2 lubridate MASS multcomp multcompView plyr polynom quantreg rlang scales splus2R tibble]; }; ggpointdensity = derive2 { name="ggpointdensity"; version="0.1.0"; sha256="0c9a14j3b0hvamqylhzldw2hjdxmfbllwahjkf3gg2rw337ld9iy"; depends=[ggplot2]; }; ggpointless = derive2 { name="ggpointless"; version="0.0.3"; sha256="1gladyzmfipmjqzpcz0xjc5fjc8sw9nrmnzw0dcz516a1wy8wys9"; depends=[ggplot2]; }; ggpol = derive2 { name="ggpol"; version="0.0.7"; sha256="11xr26kwmkjjb51wm44ydv0vcinc6k6faqwx4s2faj4iwidlys1m"; depends=[dplyr ggplot2 glue gtable plyr rlang tibble]; }; ggpolar = derive2 { name="ggpolar"; version="0.2.2"; sha256="18m0nd74cz30gr961404wnib5v2wddpf1iv453s5dri0vxlmdl6w"; depends=[ggplot2 rlang]; }; ggpolypath = derive2 { name="ggpolypath"; version="0.3.0"; sha256="0ipn1lhmpcdxim3235kxsw6vkj7cf7smqdm534jfa75ski4q9xpy"; depends=[ggplot2]; }; - ggpp = derive2 { name="ggpp"; version="0.5.4"; sha256="05w74003jp7kprxxbni0plr7ydzyc5hzw8g39kn0qd4p7dksjpwr"; depends=[dplyr ggplot2 glue gridExtra lubridate magrittr MASS polynom rlang scales stringr tibble xts zoo]; }; + ggpp = derive2 { name="ggpp"; version="0.5.6"; sha256="0xnjbxd1lkg85c2hsx7cgxqsqb3dc0pma8jwdlqfgg7d519d60xa"; depends=[dplyr ggplot2 glue gridExtra lubridate magrittr MASS polynom rlang scales stringr tibble xts zoo]; }; ggprism = derive2 { name="ggprism"; version="1.0.4"; sha256="0ycklp7764cw65hqh9r61im8vqfd7sjayyw1gvprxzg7k217gnl3"; depends=[digest ggplot2 glue gtable rlang scales tibble]; }; ggpubr = derive2 { name="ggpubr"; version="0.6.0"; sha256="0x7p3lbh0xv5qk0shsrj1fjx382zak7mj8l3z1zd348r2pccavif"; depends=[cowplot dplyr ggplot2 ggrepel ggsci ggsignif glue gridExtra magrittr polynom purrr rlang rstatix scales tibble tidyr]; }; ggpval = derive2 { name="ggpval"; version="0.2.5"; sha256="09wjfkmsh165xiw1dab6c8qb9wrnzm1q1sbfnbzyg99wsk480bgy"; depends=[data_table ggplot2]; }; ggquickeda = derive2 { name="ggquickeda"; version="0.3.0"; sha256="0kqsyfmfsgqlca3p4f64sd5d7v7yzz02qvba31z5lj0sr267npmx"; depends=[colourpicker dplyr DT Formula GGally ggbeeswarm ggplot2 ggpmisc ggpubr ggrepel gridExtra Hmisc markdown plotly quantreg rlang RPostgres scales shiny shinyFiles shinyjqui shinyjs stringr survival survminer table1 tidyr zoo]; }; - ggquiver = derive2 { name="ggquiver"; version="0.3.2"; sha256="1nzqfm9byr0bmj0l6fdf8afymbhc6qjq5iff3wnng7gqqaa9s6dc"; depends=[ggplot2]; }; + ggquiver = derive2 { name="ggquiver"; version="0.3.3"; sha256="1ywpcbm6rg2f44iiw2j07p7zwfgjrnli6wscrfx93wsqaa55xyfi"; depends=[ggplot2]; }; ggragged = derive2 { name="ggragged"; version="0.1.0"; sha256="17hpzqslns2y7kpfjpw9lnwzilzshlkbhy69k0ql8k6xs2zaxn9m"; depends=[ggplot2 gtable rlang vctrs]; }; ggrain = derive2 { name="ggrain"; version="0.0.3"; sha256="129b9ypny134w0qqi9d86bx3x588136lxscasqdbcpda1l2nj6ni"; depends=[cli gghalves ggplot2 ggpp rlang vctrs]; }; ggraph = derive2 { name="ggraph"; version="2.1.0"; sha256="07sw4h94dzbs44dcvvj80g8v8252k4iw8pkmzdrk4qagvhidnvv8"; depends=[cli digest dplyr ggforce ggplot2 ggrepel graphlayouts gtable igraph lifecycle MASS Rcpp rlang scales tidygraph vctrs viridis withr]; }; ggraptR = derive2 { name="ggraptR"; version="1.3"; sha256="1i6jp0n1sz5b4sv3d4h5624zhlknih2qp6p2m2ri6s3gsh1pl9zz"; depends=[dplyr ggplot2 pacman purrr shiny]; }; ggrasp = derive2 { name="ggrasp"; version="1.2"; sha256="0jl4bmhsisqc7nam8r027lr1qp0yr6bvdiyycknp7bkl65cg2x1z"; depends=[ape bgmm colorspace ggplot2 mixtools]; }; ggrastr = derive2 { name="ggrastr"; version="1.0.2"; sha256="1l90mlb6bqq98ifmlbs5481vch9inmzdnvnz192adklrr9nl09yb"; depends=[Cairo ggbeeswarm ggplot2 png ragg]; }; - ggrcs = derive2 { name="ggrcs"; version="0.3.0"; sha256="1j4pqcsacsnca6aj20kppparzff4wrbfs55vq66igmhcd43ry3rd"; depends=[ggplot2 rms scales]; }; + ggrcs = derive2 { name="ggrcs"; version="0.3.5"; sha256="1p58i8a0n1pgp08mss0l4y27fwcihafhza66zssr7x9lmfkiqyhk"; depends=[cowplot ggplot2 rms scales]; }; ggredist = derive2 { name="ggredist"; version="0.0.2"; sha256="1p5bzqi4g5ri0m0nlwra6vps4sil7qc56cd8nzp0xh7k1gl598ig"; depends=[ggplot2 scales]; }; ggrepel = derive2 { name="ggrepel"; version="0.9.4"; sha256="0gngsx87rcqijdr684bgpnazdlz3vj4brzw0fic0jdsrf1rb9aw1"; depends=[ggplot2 Rcpp rlang scales withr]; }; - ggridges = derive2 { name="ggridges"; version="0.5.4"; sha256="0lfqx21g09s3fp74mld47qfx1nnav18xqj37griyqk406hh1rxrb"; depends=[ggplot2 scales withr]; }; + ggridges = derive2 { name="ggridges"; version="0.5.5"; sha256="18bmbq5pd751hnw8rpvshvapg09630i2pqpwk5a3yhgz4hwa8xvm"; depends=[ggplot2 scales withr]; }; ggrisk = derive2 { name="ggrisk"; version="1.3"; sha256="02df3gcviax747d33v30m97jsazj7zdpjnhypfy38cg70yxidwg9"; depends=[cutoff do egg ggplot2 nomogramFormula reshape2 rms set survival]; }; ggrounded = derive2 { name="ggrounded"; version="0.0.3"; sha256="124khfv4fl3xgylq4s1pc3wzld0n68iclyl0pm19jcw97bmf1cxl"; depends=[ggplot2 gridGeometry]; }; ggroups = derive2 { name="ggroups"; version="2.1.2"; sha256="0fb6awfm4vn67pgmz50fljvp9mfxx1q29pirgv04dya8751srxgi"; depends=[]; }; @@ -10601,10 +10792,9 @@ in with self; { ggsector = derive2 { name="ggsector"; version="1.6.6"; sha256="0qaf8wl1mmwl3razyif08sh329p9j1jgqc0ls5szqirq3db4315i"; depends=[dplyr ggplot2 magrittr Matrix prettydoc rlang Seurat tibble tidyr]; }; ggseg = derive2 { name="ggseg"; version="1.6.5"; sha256="0495g3l71lagrmz3s3lxy4rkfr7gin8vn1m59fvcv7hmycn39i0k"; depends=[dplyr ggplot2 sf tidyr vctrs]; }; ggseg3d = derive2 { name="ggseg3d"; version="1.6.3"; sha256="1rpq2wgyyladz5nkngkvbf3cy4pw212dj1vfh7ksh0bxi7v1k6mh"; depends=[dplyr magrittr plotly scales tidyr]; }; - ggseqlogo = derive2 { name="ggseqlogo"; version="0.1"; sha256="13q6kcpxrqxqbji889fx63p0nsi08lk5yymkchig75r5k1d18ky1"; depends=[ggplot2]; }; ggseqplot = derive2 { name="ggseqplot"; version="0.8.3"; sha256="1ml71lxkr1bnf0l0ljpnlj7rlfmgmk6zmydm899pwvgngph1rjq6"; depends=[colorspace dplyr forcats ggh4x ggplot2 ggrepel ggtext glue patchwork purrr Rdpack rlang tidyr TraMineR usethis]; }; ggshadow = derive2 { name="ggshadow"; version="0.0.5"; sha256="0cakz31hp97kdvdcyrp9p03nz81kypsn9sn6nxl7kb0n3rrrlav0"; depends=[cli ggplot2 glue rlang scales vctrs]; }; - ggside = derive2 { name="ggside"; version="0.2.2"; sha256="1z50z4xpxfpqdz26hja6xw3q403p00cr5qawjxl0qg4jixl7j65p"; depends=[ggplot2 glue gtable rlang scales tibble vctrs]; }; + ggside = derive2 { name="ggside"; version="0.2.3"; sha256="0qj564rqxw8fn5h00wwmkvk6p3x60r64gpvxw9yrb5lvcykgsj8q"; depends=[cli ggplot2 glue gtable rlang scales tibble vctrs]; }; ggsignif = derive2 { name="ggsignif"; version="0.6.4"; sha256="02mjailzyqkdnzky60dgampw2sq6mnn7s66fk0lhy32s8apm280i"; depends=[ggplot2]; }; ggsoccer = derive2 { name="ggsoccer"; version="0.1.7"; sha256="13icxd9w3dfwpjl4yaw0gp09mviwf7xrrfs30z66nga459h6gf1d"; depends=[ggplot2 rlang]; }; ggsolvencyii = derive2 { name="ggsolvencyii"; version="0.1.2"; sha256="0jzj4iglgzwp6pfs5zr7mirdiqrrmbwdvl245b1fwf42rnxbqrq6"; depends=[dplyr ggplot2 magrittr tidyr]; }; @@ -10613,17 +10803,18 @@ in with self; { ggspectra = derive2 { name="ggspectra"; version="0.3.12"; sha256="0kq029w14w3z7qscrasxv289iizcxc7lvkbn5ysiz4jgrvgyc55g"; depends=[ggplot2 ggrepel lubridate photobiology photobiologyWavebands rlang scales tibble]; }; ggstance = derive2 { name="ggstance"; version="0.3.6"; sha256="0wk3gbi5365sndi02gwd4c33vcrj5p8cfwakwjg010y5hgxx96nd"; depends=[cli ggplot2 plyr rlang withr]; }; ggstar = derive2 { name="ggstar"; version="1.0.4"; sha256="0m2knp1jf1x62nqd8ln4haw90jv69l7vjrhn4pdrywgmwhdrp8gd"; depends=[cli ggplot2 gridExtra scales]; }; - ggstats = derive2 { name="ggstats"; version="0.5.0"; sha256="1a3pbz07cbngcix450xqwfvr94r16m451d668szjsmrijqbbd1k6"; depends=[broom_helpers cli dplyr forcats ggplot2 lifecycle magrittr patchwork purrr rlang scales stringr tidyr]; }; + ggstats = derive2 { name="ggstats"; version="0.5.1"; sha256="1jcydapwarl1cxinm80rjmmli8vmlid8alnh6w484bh7nwzmcsic"; depends=[broom_helpers cli dplyr forcats ggplot2 lifecycle magrittr patchwork purrr rlang scales stringr tidyr]; }; ggstatsplot = derive2 { name="ggstatsplot"; version="0.12.1"; sha256="0w24dbz2zc60zpxp2bylj6yk8rwdrkbppkykmip1wrhsbi8663xi"; depends=[correlation datawizard dplyr ggcorrplot ggplot2 ggrepel ggside ggsignif glue insight paletteer parameters patchwork performance purrr rlang statsExpressions tidyr]; }; ggstream = derive2 { name="ggstream"; version="0.1.0"; sha256="0d6g5916mfrg2srcqjhlpm4acp4g16vq9ks4x37yzkpr34vi5x7j"; depends=[dplyr forcats ggplot2 magrittr purrr tidyr]; }; ggstudent = derive2 { name="ggstudent"; version="0.1.1-1"; sha256="0qs27b4lksaaaspavkycbzf8cfjxjli7xrfjby71sl0lca3fwm1g"; depends=[dplyr ggplot2]; }; ggsurvey = derive2 { name="ggsurvey"; version="1.0.0"; sha256="1a50ac2546pxa35k59j4ih0csiyfjdgqfqwm3fb5ny7jx1mk0hmi"; depends=[dplyr ggplot2 hexbin survey]; }; - ggsurvfit = derive2 { name="ggsurvfit"; version="0.3.1"; sha256="1krkkmbl54227i2gwl8nwg8r3aghxb6cqvxvi0z791n1vr0zn7xy"; depends=[broom cli dplyr ggplot2 glue gtable patchwork rlang survival tidyr]; }; + ggsurvfit = derive2 { name="ggsurvfit"; version="1.0.0"; sha256="1gb7plyg49zv1y2v1bwvk8afziqjr34d1ilwwiazls3pgcnm8si3"; depends=[broom cli dplyr ggplot2 glue gtable patchwork rlang survival tidyr]; }; ggswissmaps = derive2 { name="ggswissmaps"; version="0.1.1"; sha256="0is48x6k2p5dgj9q4km0dv33a9pcpfhlai9vz295y3acpyrkmnn4"; depends=[ggplot2]; }; ggtea = derive2 { name="ggtea"; version="0.1.1"; sha256="04g8g17ziw13rxjzkvgy5yd0z15ypxk0b8fq2y1vk8acsqr2dv11"; depends=[ggplot2]; }; ggtern = derive2 { name="ggtern"; version="3.4.2"; sha256="1xmh0gi81xrzkgjlbxb3jl9mrj407q7ykm4wpdbmd4gdswv20y61"; depends=[compositions ggplot2 gridExtra gtable hexbin latex2exp lattice MASS plyr proto scales]; }; ggtext = derive2 { name="ggtext"; version="0.1.2"; sha256="10vrrxviv4yp9lqsanqvwsvbj64vn66hwm1w7860x1g58hf1g0l7"; depends=[ggplot2 gridtext rlang scales]; }; - ggthemes = derive2 { name="ggthemes"; version="4.2.4"; sha256="0rw5f6axyz1pqn6qx9jwm38hjzn8bqs1nfjkvm96z3xnyn61cdbv"; depends=[ggplot2 purrr scales stringr tibble]; }; + ggthemeUL = derive2 { name="ggthemeUL"; version="0.1.3"; sha256="0nv11db6ds7xshh7dkpz1agfq0r8a9z3qvgd3m1icqcg3w60as0y"; depends=[ggplot2]; }; + ggthemes = derive2 { name="ggthemes"; version="5.0.0"; sha256="1iddxlcxbj5pq0llbhjh5gvxq8j4kzby0cahy0sgzzca074i7aan"; depends=[ggplot2 lifecycle purrr scales stringr tibble]; }; ggtikz = derive2 { name="ggtikz"; version="0.1.2"; sha256="00l91sw6h8h7wvzj6nn30q7rniw8kb0pxrvy4xah5bhb44iz7gmk"; depends=[dplyr ggplot2 stringr tikzDevice]; }; ggtrace = derive2 { name="ggtrace"; version="0.2.0"; sha256="1zzdamzxkwimzjhrjf5nijj0r94l03nabny5gjv49kqlncjicr7r"; depends=[ggplot2 rlang]; }; ggtrendline = derive2 { name="ggtrendline"; version="1.0.3"; sha256="10ml5mdijh27b1js67zwaywn81bvz6aja1bn60k3rnr964nsljsj"; depends=[ggplot2]; }; @@ -10632,17 +10823,18 @@ in with self; { ggvenn = derive2 { name="ggvenn"; version="0.1.10"; sha256="0gl7z8hrn2wmmb59fvfv2hsw40p629aj086dv0kwlv162zqidqfd"; depends=[dplyr ggplot2]; }; ggversa = derive2 { name="ggversa"; version="0.0.1"; sha256="0xqn8iznrm8q30pxwka88wi1z7lndi6lm12rq6ngcaxf294fbz01"; depends=[]; }; ggvis = derive2 { name="ggvis"; version="0.4.8"; sha256="0sm28s2zlr3rbp7qzpgin7d9axixn4kgi1apb5mw4mvsp6h80m1x"; depends=[assertthat dplyr htmltools jsonlite magrittr rlang shiny]; }; - ggwordcloud = derive2 { name="ggwordcloud"; version="0.6.0"; sha256="1plrlp4f4qdsn7512syv34ql9vb0i80dhq5zm10y9a19bhkml2yz"; depends=[colorspace ggplot2 gridtext png Rcpp scales]; }; + ggwordcloud = derive2 { name="ggwordcloud"; version="0.6.1"; sha256="1fbxpvylz0b911a4xg0ywqsgryfrshxlp18fvjg53xplxw1brfxp"; depends=[colorspace ggplot2 gridtext png Rcpp scales]; }; ggx = derive2 { name="ggx"; version="0.1.1"; sha256="13yvckny2b7b7rhgi28xm8379paskin78wm5095s1ily9a2dxgkg"; depends=[ggplot2 sets]; }; gh = derive2 { name="gh"; version="1.4.0"; sha256="0wcbnnws472v1i6q012pbdxjpsd4clj6a2cscf73g6s2336rzik8"; depends=[cli gitcreds httr2 ini jsonlite rlang]; }; ghapps = derive2 { name="ghapps"; version="1.0.0"; sha256="12z234lc7iy8svnm37ybj9ym0zd3jq5q9fng9h7dxdw2p9id7y30"; depends=[gh jose openssl]; }; ghclass = derive2 { name="ghclass"; version="0.2.1"; sha256="0jpfc2mjwi6i3bcrfjjl6k4im4m110pq2n00mij2n9czz6v2chla"; depends=[base64enc cli dplyr fs gh glue httr lubridate purrr rlang tibble whisker withr]; }; + ghcm = derive2 { name="ghcm"; version="3.0.1"; sha256="18cp82bniz1mdrkfi6y6mrrjxz5jhkz4w21939c5wsz9mlp9d2bj"; depends=[CompQuadForm Rcpp]; }; ghibli = derive2 { name="ghibli"; version="0.3.3"; sha256="0kl98vxlk86jsqqklzcqr5a65lhqyday3vax374ai6pc24pjymcg"; depends=[prismatic]; }; ghql = derive2 { name="ghql"; version="0.1.0"; sha256="19awg98r2hwwwwrwh0166y8ij1clf58vrf02i8fhhfzddx3an6bz"; depends=[crul graphql jsonlite R6]; }; ghyp = derive2 { name="ghyp"; version="1.6.4"; sha256="0964gr8hmqrbg7rwm4hplxfqz2iccpir1dchmnqidkjqj8p9yy1d"; depends=[MASS numDeriv]; }; ghypernet = derive2 { name="ghypernet"; version="1.1.0"; sha256="0k4w37vnhpanpa80la8rscgimnnzzid5v59109xfbbz1xxx1bb49"; depends=[dplyr extraDistr numbers pbmcapply plyr purrr reshape2 rlang rootSolve texreg]; }; giacR = derive2 { name="giacR"; version="1.0.0"; sha256="12a6cj93id0x1xz39bcg52v7g1d9yd7k2nz2wiiljw2xgbirjjqz"; depends=[chromote jsonlite pingr processx R6]; }; - gibasa = derive2 { name="gibasa"; version="0.9.5"; sha256="06vr2jb4z31shmz95pbjslbp600ib638s9llyz6mhc73lbiv7rdj"; depends=[dplyr Matrix purrr Rcpp RcppParallel readr rlang stringi]; }; + gibasa = derive2 { name="gibasa"; version="1.0.1"; sha256="1jmyagh0hi0d0v691v1ycgqsiz4cnqdd0x286asjqc2mjsqlgabv"; depends=[dplyr Matrix purrr Rcpp RcppParallel readr rlang stringi]; }; gibble = derive2 { name="gibble"; version="0.4.0"; sha256="19il4si7ch5jr7plr8qwv7jrc5kfkxmh5jrcdvbn688gxcnv7bs0"; depends=[dplyr rlang tibble]; }; gif = derive2 { name="gif"; version="0.1.0"; sha256="119d7q9xs6xpncv1r2w008kld9z07ckyj1kja9b8n2lnlb8532pk"; depends=[MASS Matrix Rcpp RcppEigen]; }; gifski = derive2 { name="gifski"; version="1.12.0-2"; sha256="0ybv0fm4p23zfxnyjj97bym09r4brg9z26298ibxzl58j6r624r8"; depends=[]; }; @@ -10652,11 +10844,12 @@ in with self; { gimme = derive2 { name="gimme"; version="0.7-15"; sha256="0qg6zkik72pqgkkbqd7c2zn4l6k7fs91cnawk7m2hsw1naiksjjn"; depends=[aTSA data_tree igraph imputeTS lavaan MASS MIIVsem nloptr qgraph]; }; gimmeTools = derive2 { name="gimmeTools"; version="0.1"; sha256="1g170rz3c3qx27yy67f7xab4gkm0pbbvwlwkcsczfxphad609ryl"; depends=[easycsv magrittr miniUI rhandsontable rintrojs rstudioapi shiny shinyjs shinyWidgets]; }; gimms = derive2 { name="gimms"; version="1.2.2"; sha256="0dhvi05mpwyx6cpcyk2nzvgd6c8byd7cmrd9crx83lvfa03smpng"; depends=[curl Kendall ncdf4 raster zyp]; }; + giniVarCI = derive2 { name="giniVarCI"; version="0.0.1-3"; sha256="1yv97q6l8imd7z8zqykymmsx6905wrygj5l3arwdz9irfgvw55lx"; depends=[Rcpp]; }; ginormal = derive2 { name="ginormal"; version="0.0.2"; sha256="0b37np2h03m82dhww9slnchm3dk4qwfmj6v7q13li788cw7whid1"; depends=[BAS]; }; gips = derive2 { name="gips"; version="1.2.1"; sha256="0mvjgzqy3sqa5p1263v042k20j6hmlgli9llgq89y17d47njmfw4"; depends=[numbers permutations rlang]; }; - giscoR = derive2 { name="giscoR"; version="0.3.5"; sha256="1sbdpljrznzgqakqmdrn3lxr4ipp8b70zddh0ffwql8knl9lxvdm"; depends=[countrycode geojsonsf rappdirs sf]; }; + giscoR = derive2 { name="giscoR"; version="0.4.0"; sha256="04iprw9jrab1cpw0flb8whldcyr9safm9p7k78fbaa4yaccd9051"; depends=[countrycode geojsonsf httr rappdirs sf]; }; gistr = derive2 { name="gistr"; version="0.9.0"; sha256="0ac9ikrdg6i8xvlma0gizvsdva46408lk7hvsgkqirhy2ljy02hp"; depends=[assertthat crul dplyr httr jsonlite knitr magrittr rmarkdown]; }; - git2r = derive2 { name="git2r"; version="0.32.0"; sha256="0wa6k1g7y0sx6s7map7mn579c1h07n185m163msmcjk81i62ap8v"; depends=[]; }; + git2r = derive2 { name="git2r"; version="0.33.0"; sha256="158q1rzh9j0xb6l09j6banzvx8l26bhvip2z4lf6ymi21s6vcm8q"; depends=[]; }; git2rdata = derive2 { name="git2rdata"; version="0.4.0"; sha256="05hr4ks2rdnjhbd5v865r9h6gnw149n5h6nwilw5xfx00gj86b9d"; depends=[assertthat git2r yaml]; }; git4r = derive2 { name="git4r"; version="0.1.2"; sha256="1kfx95y0kp656y8306jz75q4zmd8dswfmrb5jr0wihlhnz182g2h"; depends=[diffr git2r]; }; gitGPT = derive2 { name="gitGPT"; version="0.1.3"; sha256="1jznhl0ljcang10s4k9338fy5qsp0pxg4kv482v93milszib3vy7"; depends=[httr jsonlite]; }; @@ -10666,11 +10859,11 @@ in with self; { gitgadget = derive2 { name="gitgadget"; version="0.8.1"; sha256="1kcky3yxj4f9rgp2dliwavajwy2784ynplnmvcyizwj83l07zjql"; depends=[callr curl dplyr jsonlite markdown miniUI rstudioapi shiny shinyFiles usethis]; }; githubinstall = derive2 { name="githubinstall"; version="0.2.2"; sha256="0hqh86r2007hzdbm8rr0fwqhhsna7ji8sdgmdnrxkxraa5f2pfz3"; depends=[curl data_table devtools httr jsonlite mockery]; }; githubr = derive2 { name="githubr"; version="0.9.1"; sha256="1h3yaz2snrlibl707rnv2l5y5r879dsprcr0a0vc8aliwdsmydvi"; depends=[dplyr gh gitcreds httr magrittr]; }; - gitignore = derive2 { name="gitignore"; version="0.1.5"; sha256="1jph54ah4ajb5xakbpnbmp44ddqz5np7c60441vhfn7nxa5b9cpx"; depends=[clipr clisymbols crayon curl glue here jsonlite purrr xfun]; }; + gitignore = derive2 { name="gitignore"; version="0.1.6"; sha256="1cjfqbch614w75lxc8pw44aryxgcswbhydd48q10ch128x2gvw5a"; depends=[clipr clisymbols crayon curl glue here jsonlite purrr xfun]; }; gitlabr = derive2 { name="gitlabr"; version="2.0.1"; sha256="0h3md21ir0nw9n17y6sg8y7l4z2lk5f5bvz4q6v3cs7jn734imwb"; depends=[arpr base64enc dplyr httr magrittr purrr shiny stringr tibble]; }; gitlink = derive2 { name="gitlink"; version="0.1.3"; sha256="1g34cyx35wlpq42alsayk69x708zxqgvbdndb7j6n1q0rm4vncvd"; depends=[htmltools rlang]; }; gitr = derive2 { name="gitr"; version="0.0.1"; sha256="09l22wv2r7l1ax17y1q1xmasibyqm71jk0nyvmvlawavkw6by658"; depends=[]; }; - gittargets = derive2 { name="gittargets"; version="0.0.6"; sha256="1fk32z83qglkmnsziqn9gzv20br0lyv4gll4y4rr4bwl66x81af5"; depends=[callr cli data_table gert processx targets tibble uuid]; }; + gittargets = derive2 { name="gittargets"; version="0.0.7"; sha256="0kgr3rcy261zlsc4a5sqvar6kwb23wcfdwv2rpjcfwdvghz3afzc"; depends=[callr cli data_table gert processx targets tibble uuid]; }; givitiR = derive2 { name="givitiR"; version="1.3"; sha256="0y2slhxhj7k413kjaydin9hq3x2xgx4cgjshdplwnmg3x2nakn31"; depends=[alabama rootSolve]; }; gjam = derive2 { name="gjam"; version="2.6.2"; sha256="1jzgh5hp112gjgqyyhpd4fv1yizb56596wl3izb066rzhhyc4wim"; depends=[MASS RANN Rcpp RcppArmadillo]; }; gk = derive2 { name="gk"; version="0.6.0"; sha256="1dwv6389w9cgavwkzznbdzf92d3y0s07s74a5ccwiy1zf48jwwar"; depends=[Ecdat lubridate progress]; }; @@ -10688,7 +10881,7 @@ in with self; { gld = derive2 { name="gld"; version="2.6.6"; sha256="1i7xpyxd7r1fkjy9zkzd3rfsnb35v5c5fkafs1zd9d8729wfj8za"; depends=[e1071 lmom]; }; gldrm = derive2 { name="gldrm"; version="1.5"; sha256="1mbdxqjw6sa47kigwrjq1gn6vi36zhg9j2lck144iwa10ms0y9xp"; depends=[]; }; glinternet = derive2 { name="glinternet"; version="1.0.12"; sha256="0aphdscj0s6kqxlkgqkw2d6snrylz6hiis6307pl8ldh7q5cvm33"; depends=[]; }; - glinvci = derive2 { name="glinvci"; version="1.2.1"; sha256="18ps1cv2fyzsyplv15qaqg5k8a1hwri8sqqfm9fncifpjlgmssvk"; depends=[ape BB generics lbfgsb3c numDeriv optimx plyr rlang]; }; + glinvci = derive2 { name="glinvci"; version="1.2.2"; sha256="0h8fv30gv4807yflymrla0hiy56sxvdm1530k1ag0gbq067i1sz8"; depends=[ape BB generics lbfgsb3c numDeriv optimx plyr rlang]; }; gllm = derive2 { name="gllm"; version="0.38"; sha256="06sq7yk11rbqj8i900ss987fg9b232cirjxhdm1yl9xqz4inxvlg"; depends=[]; }; gllvm = derive2 { name="gllvm"; version="1.4.3"; sha256="1k3yw1flqzj151kqx8wyh54a7crh62ya700x5n4989ngx5071dv3"; depends=[alabama fishMod MASS Matrix mgcv mvabund nloptr RcppEigen statmod TMB]; }; glm_deploy = derive2 { name="glm.deploy"; version="1.0.4"; sha256="1akklvbhz2pp0sv1hax1jq0s9ajbfv1597z643gh5l9hwizj2h9m"; depends=[Rcpp]; }; @@ -10701,21 +10894,20 @@ in with self; { glmglrt = derive2 { name="glmglrt"; version="0.2.2"; sha256="1954ywshnqzr7h77wshf63y3zx3ra8mrfabg5dqjhkgv4rsk3h1y"; depends=[MASS parameters]; }; glmlep = derive2 { name="glmlep"; version="0.2"; sha256="0rq2vxbr732r725pn8qdvppxcrhjhyvlr550svfgy1inq985c1w4"; depends=[]; }; glmm = derive2 { name="glmm"; version="1.4.4"; sha256="0v8iill3503piyx3wjxd602hs6hgz9818ipqlvg34963hh4b4ixi"; depends=[doParallel foreach itertools Matrix mvtnorm trust]; }; - glmm_hp = derive2 { name="glmm.hp"; version="0.1-0"; sha256="1zs2aibvb4pykm80pi0rxbdf5qm05l8xhdz20rmx52101837lzjj"; depends=[ggplot2 lme4 MuMIn vegan]; }; + glmm_hp = derive2 { name="glmm.hp"; version="0.1-2"; sha256="14sp54h6lrn4bfi4n3ilp9asz442lcvy72yhcp5pjyynld2wm3c5"; depends=[ggplot2 lme4 MuMIn vegan]; }; glmmEP = derive2 { name="glmmEP"; version="1.0-3.1"; sha256="0fql85m0mxn58jh3mgrcw56bb4dx7amrz39ngqrljwi5pv5i7aj4"; depends=[lme4 matrixcalc]; }; glmmLasso = derive2 { name="glmmLasso"; version="1.6.3"; sha256="1b2wkmsmnhmkql0kin56faf64abc6hijrs6dlz8qvwcbqpgbpcig"; depends=[Matrix minqa Rcpp RcppEigen]; }; - glmmML = derive2 { name="glmmML"; version="1.1.5"; sha256="1sfxg6nv5wz40dq0j3fhn8hcrlnqrsjkwif2g93s6fzaxa83vl8p"; depends=[]; }; + glmmML = derive2 { name="glmmML"; version="1.1.6"; sha256="0n3r1cpz7rgiighykbjfw1k5s1xgr1vdli960hmaadyy61jza417"; depends=[]; }; glmmPen = derive2 { name="glmmPen"; version="1.5.3.4"; sha256="1frb5127wsvqx4z8dlh6bvykyknjwakiqjgm8xyhli3zjbgc07gy"; depends=[BH bigmemory coxme ggplot2 lme4 MASS Matrix mvtnorm ncvreg Rcpp RcppArmadillo RcppEigen RcppParallel reshape2 rstan rstantools StanHeaders stringr survival]; }; glmmSeq = derive2 { name="glmmSeq"; version="0.5.5"; sha256="182pgwqqbgpkcvapkps7ahxa4ppic44j10081q0v9lp2cjdiv4qy"; depends=[car ggplot2 ggpubr glmmTMB lme4 lmerTest MASS pbapply pbmcapply plotly qvalue]; }; glmmTMB = derive2 { name="glmmTMB"; version="1.1.8"; sha256="055xi424cd1glhbv8a8v9cm79zq9skb7230nq0xm90iggb1zcj22"; depends=[lme4 Matrix mgcv nlme numDeriv RcppEigen TMB]; }; glmmfields = derive2 { name="glmmfields"; version="0.1.8"; sha256="0nn328dn7fbh3h0wnl4kahwrbq9ddr3hyqq7930raa0abimg8ykq"; depends=[assertthat BH broom broom_mixed cluster dplyr forcats ggplot2 loo mvtnorm nlme Rcpp RcppEigen RcppParallel reshape2 rstan rstantools StanHeaders tibble]; }; - glmmrBase = derive2 { name="glmmrBase"; version="0.4.6"; sha256="1bpi2z8gf7v4g5w3vwcxbpnx47gmr56sb17m42qp2zy4acjh27c1"; depends=[BH digest Matrix R6 Rcpp RcppEigen RcppParallel rminqa SparseChol]; }; - glmmrOptim = derive2 { name="glmmrOptim"; version="0.3.2"; sha256="0rs43vv31fdch83fs7ibx1zwwpcsdyqr7ggljfa9c168sgmhxa37"; depends=[BH digest glmmrBase Matrix Rcpp RcppEigen RcppProgress rminqa SparseChol]; }; + glmmrBase = derive2 { name="glmmrBase"; version="0.5.3"; sha256="1q3pj76iac6dr3hlbjv84zd5nqcl9a8j1z2wvs0nd99bcvh6rhk5"; depends=[BH digest Matrix R6 Rcpp RcppEigen RcppParallel rminqa SparseChol]; }; glmnet = derive2 { name="glmnet"; version="4.1-8"; sha256="1znw1p1mi7nv39l7albcg6sfxj7a1jyjw85hb3ginv870z7fbnqx"; depends=[foreach Matrix Rcpp RcppEigen shape survival]; }; glmnetSE = derive2 { name="glmnetSE"; version="0.0.1"; sha256="0qj3c8qrx3vl0dr9prravfjwzqv1yfi771xfss9d44wlvjz5f4gp"; depends=[boot glmnet]; }; glmnetUtils = derive2 { name="glmnetUtils"; version="1.1.9"; sha256="0rh07i9j6bxiqcl84d8jnn7dzqdwfdzak7w8bf4j4521r24mwm01"; depends=[glmnet Matrix]; }; glmnetcr = derive2 { name="glmnetcr"; version="1.0.6"; sha256="0cs0yj2js0920iggcw2vci5y9hnsm3hd7wpd7mwnx8mszwrklawg"; depends=[glmnet]; }; - glmnetr = derive2 { name="glmnetr"; version="0.3-1"; sha256="1wf40g55qmj7n6za29kysrr642kr1yriara381ws5v5pnik8dd6q"; depends=[glmnet Matrix mlrMBO ParamHelpers rpart smoof survival torch xgboost]; }; + glmnetr = derive2 { name="glmnetr"; version="0.4-1"; sha256="16ln0zpc92kmkmksyfi6ky4s8h0fdzfjbzwm00j968fx0hxlqv79"; depends=[glmnet Matrix mlrMBO ParamHelpers randomForestSRC rpart smoof survival torch xgboost]; }; glmpath = derive2 { name="glmpath"; version="0.98"; sha256="1jbiqqd1s93i941dhyyx50zlgwavhyjfw8bx13z4gz05rdvi4gn8"; depends=[survival]; }; glmpathcr = derive2 { name="glmpathcr"; version="1.0.9"; sha256="0b796jvcvq0bbm2j8ldbn8n6am2746b62wdwv296b8032vf8zzgx"; depends=[glmpath]; }; glmpca = derive2 { name="glmpca"; version="0.2.0"; sha256="02xjf0gg52925hw9nw2j0znfmzfzfwbv0fxjl9d2fy9j63drr2h4"; depends=[MASS]; }; @@ -10727,7 +10919,7 @@ in with self; { glmvsd = derive2 { name="glmvsd"; version="1.5"; sha256="0im3143xvlsgkknsjnifx9zh7jsdm9bsmgiwrk0r2iil2ns22wgy"; depends=[brglm glmnet MASS ncvreg]; }; glmx = derive2 { name="glmx"; version="0.2-0"; sha256="07fgxyfz0jcp4ks2lpnbifjrnik2vwg1c5wl7m3a290rqsnzv5gx"; depends=[Formula lmtest MASS sandwich]; }; glmxdiag = derive2 { name="glmxdiag"; version="1.0.0"; sha256="0m077j7prjc38yshq8ahprfsai0rc20qma2njjbdi975mrwxi25c"; depends=[VGAM]; }; - globalKinhom = derive2 { name="globalKinhom"; version="0.1.6"; sha256="1c80ydhiz47nwkibk6j0vhpydbbqb341s9ys1mrx8w11s59xd4s0"; depends=[spatstat_explore spatstat_geom spatstat_random]; }; + globalKinhom = derive2 { name="globalKinhom"; version="0.1.7"; sha256="0xs1s8gp8786w1n69hbxffi7sw9hyhgb8kp3h4q85b1rlrkqsn4p"; depends=[spatstat_explore spatstat_geom spatstat_random]; }; globalOptTests = derive2 { name="globalOptTests"; version="1.1"; sha256="0yf4p82dpjh36ddpfrby7m3fnj2blf5s76lncflch917sq251h4f"; depends=[]; }; globals = derive2 { name="globals"; version="0.16.2"; sha256="02kpdlrx1bannaixz03c0f7bii9g36iy2nw779mfgi56byljcb38"; depends=[codetools]; }; globaltrends = derive2 { name="globaltrends"; version="0.0.14"; sha256="13alq7vwfa2awg7xk9plna0sygsm65yni0ffkncznfpkhk5ff63q"; depends=[DBI dbplyr dplyr forcats forecast ggplot2 gtrendsR lubridate purrr rlang RSQLite stringr tibble tidyr zoo]; }; @@ -10740,7 +10932,7 @@ in with self; { glow = derive2 { name="glow"; version="0.11.0"; sha256="1q8zci8jv71xzcxsg9b0h04mx11ykpsh4lnvkgg74zfsrf3sib0f"; depends=[ggplot2 R6 Rcpp RcppEigen RcppParallel]; }; glpkAPI = derive2 { name="glpkAPI"; version="1.3.4"; sha256="1cr40jksm27h0j1j0q1ngcf4cbrhrjz48m6z3c3jns8h17h8g8qh"; depends=[]; }; glue = derive2 { name="glue"; version="1.6.2"; sha256="1gzxk5jgdh2xq9r7z09xs306ygzf27vhg3pyfl7ck1755gqii9cx"; depends=[]; }; - gluedown = derive2 { name="gluedown"; version="1.0.6"; sha256="1rvkgfsjlp9zrpgb0kvr2n6wfja5j1yz62sc9kmbizbph6yvrins"; depends=[glue magrittr]; }; + gluedown = derive2 { name="gluedown"; version="1.0.8"; sha256="0ra7pmyxj7bvhn9rv1hhij8va79nissakaf9l1317rrcvdi4l7mw"; depends=[glue magrittr]; }; gluvarpro = derive2 { name="gluvarpro"; version="7.0"; sha256="04npfllnl0x7w8z693p4zixgkrcvvvjbp9047b231pbldfirx0hy"; depends=[ggplot2 gridExtra pracma scales tidyr zoo]; }; glvmfit = derive2 { name="glvmfit"; version="0.1.0"; sha256="1nb34dm4m0nq7cr9f9jsacnk0xjv451m419sdwbk11ykpqkh9cdk"; depends=[]; }; glycanr = derive2 { name="glycanr"; version="0.4.0"; sha256="1ic2v2dim0a8kzl38vx8an80jrbzimng0plrx62a1ps1jnczihl9"; depends=[coin dplyr ggplot2 tidyr]; }; @@ -10755,13 +10947,14 @@ in with self; { gmm = derive2 { name="gmm"; version="1.8"; sha256="1n45dls7632b11bg6pipamp2zmp8j1hp4nlrj91r4schd9fgr6bh"; depends=[sandwich]; }; gmmsslm = derive2 { name="gmmsslm"; version="1.1.5"; sha256="1cbpgl5w4zkgci77lbx2ji73z3hvzj6kyr6bi79a8l65d303fblk"; depends=[mvtnorm]; }; gmnl = derive2 { name="gmnl"; version="1.1-3.2"; sha256="01pviab3gyvjdlv5jy7wzp33909znhpn47kar55bwkm6gm3bdlg8"; depends=[Formula maxLik mlogit msm plotrix truncnorm]; }; + gmoTree = derive2 { name="gmoTree"; version="1.0.1"; sha256="11fyachzqr4nkf23l5l5f8qdmj7xvlf526p4zf5inc51xdf27dyl"; depends=[data_table dplyr openxlsx plyr rlang rlist stringr]; }; gmodels = derive2 { name="gmodels"; version="2.18.1.1"; sha256="158y7yh4maawn9vki8cq4sil48xib2bbpl6qgj5gvlkw3c14hzfs"; depends=[gdata MASS]; }; - gmp = derive2 { name="gmp"; version="0.7-2"; sha256="12rd0j3sawzipfz4xr3ikrxrjabpjp4s3y4ikvk16z8rhjs2i5bw"; depends=[]; }; + gmp = derive2 { name="gmp"; version="0.7-3"; sha256="0rf6da41y54znslwkxagdfzmwji7zh131s55rwfxc6pqpdzhyvb0"; depends=[]; }; gmpoly = derive2 { name="gmpoly"; version="1.1.0"; sha256="0rlmwlxyg9b8gqyrc7mbqv7x86v9pqj51pd847raq7x1smjnz1kg"; depends=[english gmp mvp purrr]; }; gms = derive2 { name="gms"; version="0.4.0"; sha256="1m7bhy4vsz6l09pal9ibjlskmbyjmc29hqwjim1x8yansd5bxpzv"; depends=[dplyr rlang stringr yaml]; }; gmt = derive2 { name="gmt"; version="2.0.3"; sha256="1clnhwxn1z1iyzx9ps9rkfv2xqdyqc73mcc77ysmlg5cncvm1hac"; depends=[]; }; - gmvarkit = derive2 { name="gmvarkit"; version="2.0.10"; sha256="095f35p7vvw4c3v332mjd8yzg6qrz8hx3zdq70xvv389yv7z4lsd"; depends=[Brobdingnag gsl mvnfast pbapply]; }; - gmvjoint = derive2 { name="gmvjoint"; version="0.3.0"; sha256="0f2h59k16x6ajjmdq8m43zfjj93l5h0a992wqrb6z15705f252ww"; depends=[glmmTMB MASS mvtnorm pracma Rcpp RcppArmadillo statmod survival xtable]; }; + gmvarkit = derive2 { name="gmvarkit"; version="2.1.0"; sha256="07i8arny0kvdd3j0q88v80is8jpiq6d2d3an3bp6b1hy8mz15dqi"; depends=[Brobdingnag gsl mvnfast pbapply]; }; + gmvjoint = derive2 { name="gmvjoint"; version="0.4.0"; sha256="1gycj6b51irzkv2rg6vvlanaiar8z54pqwd9qswlrw48wk2q074w"; depends=[glmmTMB MASS mvtnorm pracma Rcpp RcppArmadillo statmod survival xtable]; }; gmwmx = derive2 { name="gmwmx"; version="1.0.3"; sha256="1jp3jjg0znvqmir83ygvi1nnws6xs29cfccd79vbk8702k4i9y61"; depends=[fs longmemo ltsa Matrix Rcpp RcppArmadillo rjson stringi wv]; }; gnFit = derive2 { name="gnFit"; version="0.2.0"; sha256="0cji4zjslh18dfj0l827r6br4hx2f0akiaxrg7fhhyyyhgdcjnsm"; depends=[ismev rmutil]; }; gnlm = derive2 { name="gnlm"; version="1.1.1"; sha256="1krbz791l5qc06sh6my0bkq420b5afncw87lhyx1yiml2yg46zrk"; depends=[rmutil]; }; @@ -10774,7 +10967,7 @@ in with self; { gnumeric = derive2 { name="gnumeric"; version="0.7-10"; sha256="0x8w35wj81yx7ri2jvkafkmg8d68il6m5fl6gh97g9rg5w0xkz7n"; depends=[XML]; }; go2bigq = derive2 { name="go2bigq"; version="2.0.1"; sha256="0xz6im5gc214m11w70m83mnas09sql9i0lvbgyfy0qvizn6zhyl3"; depends=[gmp Rmpfr]; }; goalp = derive2 { name="goalp"; version="0.3.1"; sha256="1xr9bgizzsjr4nn41q1zi049wg9cw6qril60bri96x0xgc00qdpz"; depends=[lpSolve]; }; - goeveg = derive2 { name="goeveg"; version="0.6.5"; sha256="1q4p1169lz5diwzmrpab2yglvr5c08mssivfbs5h13agbwrxyj8f"; depends=[fields Hmisc mgcv vegan]; }; + goeveg = derive2 { name="goeveg"; version="0.7.1"; sha256="1dzfigsx3gx7ixqsx3yqi06jcs9k33rbz4wxjjc7sfffb7l09xby"; depends=[fields Hmisc mgcv vegan]; }; gofCopula = derive2 { name="gofCopula"; version="0.4-1"; sha256="17bdrn8xsqjz64caa5wdigkv798i18gc2f9jiin1bz840bqn1abg"; depends=[copula crayon doSNOW foreach MASS numDeriv progress R_utils SparseGrid VineCopula yarrr]; }; gofar = derive2 { name="gofar"; version="0.1"; sha256="10c1qgmkdhzxk9m2sd0xxww453y9lf5vjsrbmrbzbln91i6svy8j"; depends=[glmnet magrittr MASS Rcpp RcppArmadillo rrpack]; }; gofastr = derive2 { name="gofastr"; version="0.3.0"; sha256="02jn4xbbafl7siwvkqns1818wmw813x9cvqfcnpnmcippiqhrb0b"; depends=[data_table quanteda slam SnowballC tm]; }; @@ -10824,26 +11017,28 @@ in with self; { goxygen = derive2 { name="goxygen"; version="1.0.3"; sha256="0825zl16ap0k3jqhrjw4hfsw97ils77jmf4yqq347k3bb8i3dm79"; depends=[citation gms pander stringi yaml]; }; gp = derive2 { name="gp"; version="1.1"; sha256="0w5wcjzgjajfx29whqkn3xv3v9bn4q0almmmsb7qw79dnbv5c16s"; depends=[Rfast RNGforGPD]; }; gpairs = derive2 { name="gpairs"; version="1.3.3"; sha256="08m1ydrr239vnhjbl47mng3i2w9bqmd8fijrwsraq5ysvn826n27"; depends=[barcode colorspace lattice MASS vcd]; }; - gpbStat = derive2 { name="gpbStat"; version="0.4.1"; sha256="02sb9npwd1x8fnjl7999q4vlap23pn4692bhzp0vqwy1kbr0j7da"; depends=[dplyr magrittr purrr tibble tidyr]; }; - gpboost = derive2 { name="gpboost"; version="1.2.5"; sha256="025vx2ws8zw4mndq7sz1wgsk9yh39gk5d3nn9a9v3bb1qjzi5m9q"; depends=[data_table Matrix R6 RJSONIO]; }; + gpbStat = derive2 { name="gpbStat"; version="0.4.3"; sha256="07zjc033jazpmax7x96zd5g4z1rz9qmmfwzssl7p3d9ff7aiayvx"; depends=[dplyr magrittr purrr tibble tidyr]; }; + gpboost = derive2 { name="gpboost"; version="1.2.7"; sha256="1cfpdpbsb9h4m4z7zv9vvipxxjif5qmbx3csck5pl6i0knydp0kz"; depends=[data_table Matrix R6 RJSONIO]; }; gpg = derive2 { name="gpg"; version="1.2.9"; sha256="0k2f00l400dcxa8akhy48a34w7nhbdmpq3nz6lbwp0cqa7aj678z"; depends=[askpass curl]; }; - gpindex = derive2 { name="gpindex"; version="0.5.0"; sha256="1y8n9zn9ngbbdc0na5zrigmdvv1y4facjqnx6wlv0x0bs7nj47xr"; depends=[]; }; + gpindex = derive2 { name="gpindex"; version="0.6.0"; sha256="187h9bz9g8ca81jd00sppwckq94l1c27j5plq1hw8iirfjm1xap7"; depends=[]; }; gpk = derive2 { name="gpk"; version="1.0"; sha256="1zfhkqyypb24mhbj2zi9qy3gw0kqxvlp8j5ni3zm7k5rz1bnrygg"; depends=[]; }; + gpkg = derive2 { name="gpkg"; version="0.0.7"; sha256="0b4dg5jqp6c3bwk3zkfv2bwnnx61mr6pfx8dqb08xf23v0xpkb6i"; depends=[DBI]; }; gplite = derive2 { name="gplite"; version="0.13.0"; sha256="0nxms34dfmbi3rz6x0yz8pn9a1v6w4k2w6jz1qrbqclmlg66g8vs"; depends=[Matrix Rcpp RcppArmadillo]; }; gplm = derive2 { name="gplm"; version="0.7-4"; sha256="0apvj14nl5qbi4dhhdx5nih5lvjwfcipvr8cyk6xsz4r5gfr2iw4"; depends=[AER]; }; gplots = derive2 { name="gplots"; version="3.1.3"; sha256="05k7a8x62qs5g6mps62vb3mwjdnfjzvjb20yws3x0r2j42g3p1cz"; depends=[caTools gtools KernSmooth]; }; gplsim = derive2 { name="gplsim"; version="1.0.0"; sha256="1lqw5vk23r86cks5g6vx6m8bag7pafg2w755gx16rvm5ja9l7rkj"; depends=[mgcv minpack_lm]; }; gpmap = derive2 { name="gpmap"; version="0.1.2"; sha256="1n1r4rda9v4zw8zz4vcagmkkpgirwydhqz36pyq0assxwclnkcz0"; depends=[foreach ggplot2 isotone plyr]; }; gprofiler2 = derive2 { name="gprofiler2"; version="0.2.2"; sha256="1zbfvpb4qqj6vipz0ps4pyy14h6rc4jaqfa8q4zrbhi5vvw9805r"; depends=[crosstalk dplyr ggplot2 gridExtra jsonlite plotly RCurl tidyr viridisLite]; }; - gps = derive2 { name="gps"; version="1.1"; sha256="1n6llhl8vjy6lzw7icpizc5pcg0xm6547n57dydv8asz4hxs68jy"; depends=[Matrix]; }; + gps = derive2 { name="gps"; version="1.2"; sha256="06vz0vs95z7cbmgsf71114d2gaqx7bn4zl6m33qg22aflna4shsr"; depends=[Matrix]; }; gps_track = derive2 { name="gps.track"; version="1.0.0"; sha256="064l4pi44n3vwwz04rd6fs74lja2yvsr38nf911w7ighafp7s7ph"; depends=[nngeo raster sf sp]; }; + gptoolsStan = derive2 { name="gptoolsStan"; version="0.1.0"; sha256="1f2aigkqpmbi8hxcivrbbfrpl3qs8fi2hcbvmcdc3k7j6znv4al3"; depends=[]; }; gptstudio = derive2 { name="gptstudio"; version="0.3.0"; sha256="1530qk7189mcmv9m33r4v66mj0w429n2vj3sg5943r6f8fg3kaxz"; depends=[assertthat bslib callr cli colorspace glue htmltools htmlwidgets httr2 jsonlite magrittr purrr rlang rstudioapi shiny shiny_i18n stringr waiter yaml]; }; gptzeror = derive2 { name="gptzeror"; version="0.0.1"; sha256="1xdzg0xazim7qn54zh4wkix0xn0z49b3grrazr7xhjbqx29aca48"; depends=[cli curl dplyr httr2 lifecycle tidyr]; }; gpx = derive2 { name="gpx"; version="1.1.0"; sha256="0x9b3mnbrim690l4wnyzk47bgywvnw4h4l8qznnx7zkpqib2hn5i"; depends=[lubridate rvest xml2]; }; gqlr = derive2 { name="gqlr"; version="0.0.2"; sha256="0gzhqyrbnz3qjzkr4slryrlfhlaxm474y9fahlj0sb0hvcx68pxj"; depends=[graphql jsonlite magrittr pryr R6]; }; gquad = derive2 { name="gquad"; version="2.1-2"; sha256="09hcs2lgqnim29gpd805b5ndxi22z2xwsf25rb1zckxf9c7bn7sj"; depends=[ape seqinr]; }; grImport = derive2 { name="grImport"; version="0.9-7"; sha256="196h7i4y1gzkwlybml9iz78p5xsx7y22nk5pmzibryn5amdbdy05"; depends=[XML]; }; - grImport2 = derive2 { name="grImport2"; version="0.3-0"; sha256="04k71x2wm1wsgv5fnk8xip2q5brl9cnjp3fv2rs0kdq9jkhs6yhz"; depends=[base64enc jpeg png XML]; }; + grImport2 = derive2 { name="grImport2"; version="0.3-1"; sha256="1lj58z6yc2p6ns27fkgh11ac90bcihi65hf62gxpsylcn5dilsi1"; depends=[base64enc jpeg png XML]; }; grPipe = derive2 { name="grPipe"; version="0.1.0"; sha256="0m9zxnmg8gfzridzk4lhhp1gw3nrygarn90ppwyi67bqdpp5hkfh"; depends=[DiagrammeR DiagrammeRsvg dplyr magrittr png rsvg]; }; graDiEnt = derive2 { name="graDiEnt"; version="1.0.1"; sha256="102nf21a410rsfxqs7dv88kxxr6ya76kyyj95bkjjkn4bz8dykyc"; depends=[doParallel]; }; grabsampling = derive2 { name="grabsampling"; version="1.0.0"; sha256="031a4ak84k2mbhrmjbai3q8qnf2z3d9rp0xra67x74a99av9lzs9"; depends=[extraDistr ggplot2 ggthemes plyr reshape2]; }; @@ -10858,47 +11053,46 @@ in with self; { grandR = derive2 { name="grandR"; version="0.2.2"; sha256="1jxw2isjdgxyr9lf71zpn1bzpy1qs7v0918m846s0a71k6dlqr6f"; depends=[cowplot ggplot2 labeling lfc MASS Matrix minpack_lm numDeriv patchwork plyr RCurl reshape2 rlang scales]; }; grangers = derive2 { name="grangers"; version="0.1.0"; sha256="15q8hv7p5g5m7v6lx6nq5394fa6p05xgawnsrn1v5aslmmbbzyvl"; depends=[tseries vars]; }; granova = derive2 { name="granova"; version="2.2"; sha256="0fs8r0q5gvdyppsiil5p3dmfqyn2xygkqarnbmyhr0znbcxzkwxp"; depends=[car]; }; + granovaGG = derive2 { name="granovaGG"; version="1.4.1"; sha256="1w75d878p6izdr88j836vc7753c0mkjj5k3s04f09938gxda8a8w"; depends=[dplyr ggplot2 magrittr RColorBrewer tibble tidyr]; }; grantham = derive2 { name="grantham"; version="0.1.1"; sha256="0c7kw7yh5n6mgbplnbdcviwc3r2b321v7s334b0cljz6i3c3cr76"; depends=[dplyr magrittr rlang stringr tibble tidyr vctrs]; }; grapes = derive2 { name="grapes"; version="1.0.0"; sha256="079b7w2xhb0a481s7qihhka0l9ydkjdph0865wjjkcbpr4775p26"; depends=[magrittr]; }; grapesAgri1 = derive2 { name="grapesAgri1"; version="1.1.0"; sha256="0bsnxk7fqick6y76z6s1kwrg1y8spvg0awmdg5hk37g0f3wxgyas"; depends=[agricolae corrplot desplot dplyr ggplot2 ggpubr gridGraphics gtools Hmisc kableExtra knitr magrittr PairedData pastecs RColorBrewer Rdpack reshape2 rmarkdown shiny shinyWidgets summarytools]; }; graph3d = derive2 { name="graph3d"; version="0.2.0"; sha256="1c4pmx37nf4nm6svrn9dqr50gb2fckx8635zg0n4gnzgdca1iyv4"; depends=[htmlwidgets lazyeval]; }; graph4lg = derive2 { name="graph4lg"; version="1.8.0"; sha256="07a109jjn1s36x1hpb1zvgb2wq41f11l8cv3car1lr6lw5g3rr3x"; depends=[adegenet ecodist foreign gdistance ggplot2 hierfstat igraph MASS Matrix pegas rappdirs raster Rdpack sf sp spatstat_geom spatstat_linnet stringr tidyr vegan]; }; - graphPAF = derive2 { name="graphPAF"; version="1.0.2"; sha256="144ymjvyqlwd8na8vn503f3bj9vwa9wcz226k5bnam11xz0cjza6"; depends=[boot dplyr ggplot2 ggrepel gridExtra gtools MASS reshape2 survival]; }; + graphPAF = derive2 { name="graphPAF"; version="2.0.0"; sha256="0m6v796hwxdv7nan3157x7b8xpph605ihj6gnmlh3v1p95dygsy7"; depends=[boot dplyr ggplot2 ggrepel gridExtra gtools madness MASS reshape2 survival]; }; graphTweets = derive2 { name="graphTweets"; version="0.5.3"; sha256="0jf52lclwvqgybdj6fknzx046bh6jgwxvqs4c5g1ii8f2lsz9y07"; depends=[combinat dplyr igraph magrittr purrr rlang tidyr zeallot]; }; graphclust = derive2 { name="graphclust"; version="1.3"; sha256="1crzsc05qi4i5q78w4z6s4a2s5y8fb3msr9443bnjv121sj7zn6f"; depends=[blockmodels igraph sClust]; }; grapherator = derive2 { name="grapherator"; version="1.0.0"; sha256="071by9b8figbsf4g0f8a8mgcdksjksc57mnlgggilw7py1yjnjlh"; depends=[BBmisc checkmate deldir ggplot2 lhs reshape2 vegan]; }; graphframes = derive2 { name="graphframes"; version="0.1.2"; sha256="1bv7d0sggwab4rd486ayw9gkb5ja5p5fin5pn92xnrmz8cgwsfxq"; depends=[forge sparklyr tibble]; }; graphhopper = derive2 { name="graphhopper"; version="0.1.2"; sha256="1zrnwh86jv37z07b6l1i94dgjn8k3b3a3f76gfjsyyxvlc64i76x"; depends=[dplyr googlePolylines httr jsonlite magrittr tibble]; }; - graphicalExtremes = derive2 { name="graphicalExtremes"; version="0.2.0"; sha256="00nfm6dkmx9cv9j6462vvkd72x72r4yyibg5hh9jifnss9p7smjh"; depends=[corpcor edmcr glassoFast glmnet igraph mvtnorm osqp Rdpack]; }; + graphicalExtremes = derive2 { name="graphicalExtremes"; version="0.3.0"; sha256="17jiwiq2qang1mnsz9347cwfvg4jf732rczsjidwwr0646vihrqf"; depends=[corpcor edmcr glassoFast glmnet igraph mvtnorm osqp Rdpack]; }; graphicalVAR = derive2 { name="graphicalVAR"; version="0.3.3"; sha256="1wpw92bbjf37rps9qdkd7nklr74639493kdqb2nw335k132hrs6a"; depends=[dplyr glasso glmnet igraph Matrix mvtnorm qgraph Rcpp RcppArmadillo rlang]; }; graphkernels = derive2 { name="graphkernels"; version="1.6.1"; sha256="1fwl5a13mdmia374zas0vvd4dlfnp4in9gj42c0iq01icy1wq0la"; depends=[igraph Rcpp RcppEigen]; }; - graphlayouts = derive2 { name="graphlayouts"; version="1.0.1"; sha256="0x777ixw2vvj1z3dams0zmyk25v7cdm4sx8v6knlb2mfkkg2gcyk"; depends=[igraph Rcpp RcppArmadillo]; }; + graphlayouts = derive2 { name="graphlayouts"; version="1.0.2"; sha256="1mg0j9kcjp8dbpd8fy9vr5f35pz41v18vxc7q4pyl986pj859jam"; depends=[igraph Rcpp RcppArmadillo]; }; graphon = derive2 { name="graphon"; version="0.3.5"; sha256="1x61pdsb3s1vi1iiy9pjq0iz0m5j5b6q3rqhwvx9kvmg4r8yifpv"; depends=[Rdpack ROptSpace]; }; graphql = derive2 { name="graphql"; version="1.5.1"; sha256="10zpibqh1vsin60pl5dnk4z2kzrfc3aqrhijcn36zq7f97629wv8"; depends=[jsonlite Rcpp]; }; graphseg = derive2 { name="graphseg"; version="0.1.1"; sha256="0rgr9k0imif79prw5kkcnkpw3hx8ndzh1bvd0wxgqga8f9vr1cgk"; depends=[flsa igraph magrittr Matrix sf]; }; graphsim = derive2 { name="graphsim"; version="1.0.3"; sha256="16djk5zm2pnvfyb2783rdyi6a0gspm23br7xxgb2c8wfd9gf430n"; depends=[gplots igraph Matrix matrixcalc mvtnorm]; }; - graphx = derive2 { name="graphx"; version="1.0"; sha256="1k7vq0j58yskmaqknpkhccrc5n1hh8p2fsw7419r7k6a2c3syj8a"; depends=[cubature docore jpeg magicaxis MASS plotrix png pracma raster sp]; }; graposas = derive2 { name="graposas"; version="1.0.0"; sha256="0wyrzhmkswx7s2a78lzphqm3jz9akxc462gy0icpvxn2hff9wvki"; depends=[GA mvtnorm]; }; grateful = derive2 { name="grateful"; version="0.2.4"; sha256="0g1xn8chm4if31xfd012w6zj6gl7s19yifp1pyp6v0frpslcks4b"; depends=[knitr remotes renv rmarkdown rstudioapi]; }; grates = derive2 { name="grates"; version="1.1.0"; sha256="1b9njc07wxrfbk4l286dflj44lf154vcgymrgmh7zy6691bigbjv"; depends=[]; }; - gratia = derive2 { name="gratia"; version="0.8.1"; sha256="0k4mkkkj3kbmfj8z1nsw80xh9jmrc59sxc1n7sp3ca2cfyfszgc1"; depends=[cli dplyr ggplot2 lifecycle mgcv mvnfast nlme patchwork pillar purrr rlang stringr tibble tidyr tidyselect vctrs]; }; + gratia = derive2 { name="gratia"; version="0.8.2"; sha256="0gfilxh697laf1y20kmrzjrgd1xypf529cw9xxzy64z7rn0jraih"; depends=[cli dplyr ggplot2 lifecycle mgcv mvnfast nlme patchwork pillar purrr rlang stringr tibble tidyr tidyselect vctrs]; }; graticule = derive2 { name="graticule"; version="0.4.0"; sha256="0i2nhsrhixbwisgx8354aqsnik5sax9m63fzagmj4k3fcnpry7b0"; depends=[geosphere raster reproj sp]; }; gratis = derive2 { name="gratis"; version="1.0.5"; sha256="05ac9rxzps2mal20xqwa937ybdgl73nngswvjxwya20pbwhz6l73"; depends=[doRNG dplyr foreach forecast GA generics magrittr mvtnorm polynom purrr shiny tibble tsfeatures tsibble]; }; - grattan = derive2 { name="grattan"; version="2023.1.1"; sha256="148j0mf26rv2ads18543lvcf9izh61zr5if2djxn11zm3px3l8v5"; depends=[assertthat checkmate data_table fastmatch forecast fy grattanInflators hutils hutilscpp ineq magrittr]; }; - grattanInflators = derive2 { name="grattanInflators"; version="0.4.2"; sha256="0r3c81ld08l9fz2331jhqwrivsm78n97if76grhwn1ic2himvlh5"; depends=[data_table fy hutils]; }; + grattan = derive2 { name="grattan"; version="2024.0.0"; sha256="0wq7k7h4kgq7q5r53n53bddssywx6lb3jqi74jfd3gdgixx2sp6q"; depends=[assertthat checkmate data_table fastmatch forecast fy grattanInflators hutils hutilscpp ineq magrittr]; }; + grattanInflators = derive2 { name="grattanInflators"; version="0.5.0"; sha256="0lp000wgl1jkfhbb69kpxlpnarwwybzys6waxppacd5xlimynl12"; depends=[data_table fy hutils]; }; gravitas = derive2 { name="gravitas"; version="0.1.3"; sha256="11n85bdmigqasbq8c1amj1k7manfvs3gnax2ihsf2vp56s9c463p"; depends=[dplyr ggplot2 ggridges ineq lubridate lvplot magrittr RColorBrewer rlang shiny stringr tibble tidyr tsibble]; }; gravity = derive2 { name="gravity"; version="1.1"; sha256="05kkprv63x9m715yv9kx2k70bqnkacc72zr0aljcj0ry10nl40c6"; depends=[censReg dplyr glm2 lmtest magrittr MASS multiwayvcov purrr Rdpack rlang sandwich survival tibble tidyr]; }; gravmagsubs = derive2 { name="gravmagsubs"; version="1.0.1"; sha256="1kc3dm2wmbwbad6sdhzs6bnpmri66142rc552cd75pijzbnymqvf"; depends=[Rcpp]; }; - greatR = derive2 { name="greatR"; version="1.0.0"; sha256="03xzdx8ajngz6svjv47g0hslibm2xr1741gnqxnzs4lm1iwbhamv"; depends=[cli data_table ggplot2 neldermead optimization scales]; }; + greatR = derive2 { name="greatR"; version="1.1.0"; sha256="0mibjbzyk7fvmma596vs9mlf43spzx8qk6aj0622ajxb6lszdqmm"; depends=[cli data_table furrr future ggplot2 neldermead optimization scales]; }; grec = derive2 { name="grec"; version="1.5.0"; sha256="0k40j32l551qsnw7hry0slk0y89fiff7mgfwsk9fyz70kns64yk5"; depends=[abind imagine raster terra]; }; greed = derive2 { name="greed"; version="0.6.1"; sha256="05p24991s97h0hmvv88s3hca9b50384hm6qm771dqznqs5m4ggrq"; depends=[cba cli future ggplot2 gridExtra gtable listenv Matrix Rcpp RcppArmadillo RSpectra]; }; greekLetters = derive2 { name="greekLetters"; version="1.0.2"; sha256="0c52lfpm0awd3hc6ggnjqz5ymcbbm74qlj9iznkd5gln85q29vqc"; depends=[assertthat stringr]; }; - greeks = derive2 { name="greeks"; version="1.3"; sha256="0danj3nllcxzv9gf9b5sjcjn8qafmaas3nx54r0b447d3sqdl95f"; depends=[dqrng ggplot2 magrittr plotly Rcpp shiny tibble tidyr]; }; + greeks = derive2 { name="greeks"; version="1.3.1"; sha256="08mflxga4gkb2nhs7rqcg74jjyq1ips70bq33i8pv2bzqvi3crl2"; depends=[dqrng ggplot2 magrittr plotly Rcpp shiny tibble tidyr]; }; greenclust = derive2 { name="greenclust"; version="1.1.1"; sha256="1wdz2lrrchwsxm68mvjcx3nlnr93n0jj8d5gr0j55idn7wn73gdq"; depends=[]; }; greencrab_toolkit = derive2 { name="greencrab.toolkit"; version="0.2"; sha256="11lrbjm91m2lbgr0wdy84mal4qxs9x0bmniaijxpw9fdwrkqq0aw"; depends=[BH Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; gregRy = derive2 { name="gregRy"; version="0.1.0"; sha256="1b8c8wwp8r2v51ayy7rbav24wfz75z1pylg0p4vsasaw9p06dlbz"; depends=[dplyr magrittr purrr tidyr]; }; gremlin = derive2 { name="gremlin"; version="1.0.1"; sha256="1pi1bksxmjmzclppgbqqg93swf4d72d2mr8bsxv7ndcdjr69xd5r"; depends=[Matrix nlme]; }; - gren = derive2 { name="gren"; version="0.0.1"; sha256="1wb5wwdjxi7q36md7xzmbw5lrggcgghkz3pmxipjpxw8kfv804xp"; depends=[glmnet Iso pROC Rcpp RcppArmadillo]; }; greport = derive2 { name="greport"; version="0.7-4"; sha256="1zyvw3npqz20mlfvmlrz742xxsigs21srn2df9yyjap93g7wqzy1"; depends=[data_table Formula ggplot2 Hmisc lattice latticeExtra rms survival]; }; greta = derive2 { name="greta"; version="0.4.3"; sha256="17s90053sjr9w8rylwwf1knvsp9scv5hf7vvx2kpsgzpy45myn1v"; depends=[abind callr cli coda future glue parallelly progress R6 reticulate tensorflow yesno]; }; greta_dynamics = derive2 { name="greta.dynamics"; version="0.2.0"; sha256="143ixhi2hxxgb10lp9c8b2xdp63rpbhqbxzbbbzhigf9aflpmh62"; depends=[cli glue greta tensorflow]; }; @@ -10917,7 +11111,7 @@ in with self; { gridGraphviz = derive2 { name="gridGraphviz"; version="0.3-1"; sha256="0yzy7w4bk3rn9yjqy06gzkcs0dla3n49z3v1z0mjikg8cd97d5ni"; depends=[graph Rgraphviz]; }; gridOT = derive2 { name="gridOT"; version="1.0.1"; sha256="106h1lk2fyfl68iwmbqbm9h8ip75ibanr1dsi6nrmd54pz475ry8"; depends=[Rcpp RcppArmadillo]; }; gridSVG = derive2 { name="gridSVG"; version="1.7-5"; sha256="1p8qnx9q96bni39x44l40rgcdi9r440zbipdfvkbs2paysx6mkr5"; depends=[jsonlite XML]; }; - gridpattern = derive2 { name="gridpattern"; version="1.1.0"; sha256="19g8mnc5y68w9pybckmcvr56qkwbs5z9z6zhj0bxmlprwanq4f8x"; depends=[glue memoise png rlang sf]; }; + gridpattern = derive2 { name="gridpattern"; version="1.1.1"; sha256="1v7xfgbnrr4v3arr7nm0663aywn47xb89sd0rn9s9dcz7r50aa2i"; depends=[glue memoise png rlang sf]; }; gridsampler = derive2 { name="gridsampler"; version="0.6"; sha256="0wqpqg9c372sv8zqks6v93gawiyfghw58hn7m8q45dxpqm16ss3k"; depends=[BiasedUrn ggplot2 plyr reshape2 shiny shinyBS shinythemes]; }; gridstackeR = derive2 { name="gridstackeR"; version="0.1.0"; sha256="01yazynwprzjygkh0dwrlvbjsmxvfy1pxr0nldnbngmq10wvpp2n"; depends=[checkmate htmltools shiny shinyjs]; }; gridtext = derive2 { name="gridtext"; version="0.1.5"; sha256="0f7i2qb8fawi8agy2iz2c173kfwj7cbb5ikjix64nmzqc5j7363d"; depends=[curl jpeg markdown png Rcpp rlang stringr xml2]; }; @@ -10930,22 +11124,23 @@ in with self; { gromovlab = derive2 { name="gromovlab"; version="0.8-3"; sha256="0mm303iiaqfdvr94x765dbd1018cvvl0q4z2zppwk1aif0kb53x8"; depends=[ape cluster glpkAPI igraph quadprog]; }; groundhog = derive2 { name="groundhog"; version="3.1.2"; sha256="17zav0fdblmwp3zq4hd1dkgidmm25gjs39z106r7cvm80h5hd9iy"; depends=[]; }; groupICA = derive2 { name="groupICA"; version="0.1.1"; sha256="1wl828ligvvw55xic383gdn7aq4mbwsnkl4ym6f71jn5g3p36d0i"; depends=[MASS]; }; + groupTesting = derive2 { name="groupTesting"; version="1.1.0"; sha256="06cd6w5ysh0bi7mkvra4mzlfdpfqa40im8f5krp4cbd3nkjskdif"; depends=[pracma]; }; groupWQS = derive2 { name="groupWQS"; version="0.0.3"; sha256="1c5yrsfgkhbg1fcjbrilfmf0phjry5z34536yfizc8wbc7mmmj0c"; depends=[glm2 MASS rjags Rsolnp]; }; groupdata2 = derive2 { name="groupdata2"; version="2.0.3"; sha256="0r126mq7cyc19nizyh8xk5a0pfi1sic8lxfvnlmhhhbpn97lqyqz"; depends=[checkmate dplyr lifecycle numbers plyr purrr rearrr rlang tibble tidyr]; }; groupedSurv = derive2 { name="groupedSurv"; version="1.0.5.1"; sha256="16qyvd8k7wdg0iafs5gxljx464nd79kwdl7g7g6hvhrhr621mgyq"; depends=[BH doParallel foreach qvalue Rcpp RcppEigen]; }; groupr = derive2 { name="groupr"; version="0.1.2"; sha256="1v4k8is6dkf7cl97z14i3j791a9xfcb1icm2ll5ss6h0d5ad3hym"; depends=[dplyr pillar purrr rlang tibble tidyr vctrs]; }; groupwalk = derive2 { name="groupwalk"; version="0.1.2"; sha256="1nhz9lyh863krxqqi189zpng12y658615w372km98scn1lwl6fi9"; depends=[]; }; - grove = derive2 { name="grove"; version="1.1"; sha256="0fqsj5dx7py7cin3hvfkxglh8v3x0dwj6cxy4h5vbddjl687db5x"; depends=[Rcpp RcppArmadillo wavethresh]; }; - growR = derive2 { name="growR"; version="1.0.0"; sha256="0xk0wwfvvj7gw2pfzrila6zadmzax2gsdc3skj9r00wxcj6dsanf"; depends=[R6 Rdpack rlang]; }; - growfunctions = derive2 { name="growfunctions"; version="0.15"; sha256="0rj0kypjvqj7wlswzq4kxqizhlw56zgaydf37cbfjm5090h43fzi"; depends=[ggplot2 Rcpp RcppArmadillo reshape2 spam]; }; + grove = derive2 { name="grove"; version="1.1.1"; sha256="1flqjkmvl4wmz53hckn9j9w4lg4kjrjbx98hzlfkzc9ikkp68d7z"; depends=[Rcpp RcppArmadillo wavethresh]; }; + growR = derive2 { name="growR"; version="1.2.0"; sha256="1sw9sdv008n4xsv41yyrbq4qw9w0swg4ff2jaa41gvn35fax7blj"; depends=[R6 Rdpack rlang]; }; + growfunctions = derive2 { name="growfunctions"; version="0.16"; sha256="1v1sawv9fbb6lw4ynjdkj02z8rv5k8pkw55wmg2ws3jisy3xrcm7"; depends=[ggplot2 Rcpp RcppArmadillo reshape2 spam]; }; growth = derive2 { name="growth"; version="1.1.1"; sha256="05yxjlbv1i4ly8yp3aqbxzq1z2mp7sfx7xyqw48qsdv0acqai7jy"; depends=[rmutil]; }; - growthPheno = derive2 { name="growthPheno"; version="2.1.21"; sha256="01xsmkl9hywxz1ykghys7i6451iwq78n6pjbjsh505lqnzg5prv5"; depends=[dae GGally ggplot2 Hmisc JOPS RColorBrewer readxl reshape stringi]; }; + growthPheno = derive2 { name="growthPheno"; version="2.1.23"; sha256="12am1q374ckkz0cp31473i0zqjp7z78bywjb191hwaksrv8cpp5c"; depends=[dae GGally ggplot2 Hmisc JOPS RColorBrewer readxl reshape stringi]; }; growthcleanr = derive2 { name="growthcleanr"; version="2.1.1"; sha256="18aj6wvr26srs3cfrj7rkf2d3vxqy4kn82dmfc8mazlf4f2plrra"; depends=[data_table doParallel dplyr foreach labelled magrittr plyr R_utils tidyr]; }; growthcurver = derive2 { name="growthcurver"; version="0.3.1"; sha256="1l3dqcl395nh406s7d5554r5ynk1a7v5ba5kmnv9r7lj7h9nfdjj"; depends=[minpack_lm]; }; growthmodels = derive2 { name="growthmodels"; version="1.3.1"; sha256="1lryxdjq5ns08sqfcrsi9q2h399xr6lhxgh7kasx6pajly35vg1r"; depends=[]; }; growthrate = derive2 { name="growthrate"; version="1.3"; sha256="1ak3yqlm7dnkdjlmikwa57qnf7yd9n1ixz36gv3shr252750x9cd"; depends=[clime Matrix mvtnorm]; }; growthrates = derive2 { name="growthrates"; version="0.8.4"; sha256="04q8psz4fiibjj0pl6n7wkq83qn1aizzixww8gqdxzzsq6kay81q"; depends=[deSolve FME lattice]; }; - grpCox = derive2 { name="grpCox"; version="1.0.1"; sha256="07l0gv8yc5yqp7zwqawc71kkdab6fsfrb25mp2gynlb7vabh8isy"; depends=[colorspace MASS Matrix Rcpp RcppEigen]; }; + grpCox = derive2 { name="grpCox"; version="1.0.2"; sha256="02x98zmaa7f73qv62wzr0vyyci7kcx7mmyw7cm3inlyphlkywvlw"; depends=[colorspace MASS Matrix Rcpp RcppEigen]; }; grpSLOPE = derive2 { name="grpSLOPE"; version="0.3.3"; sha256="05417f0pnp21svi30vcbkkw16zyg1kxynfigh5w2jdjmd12cb899"; depends=[Rcpp]; }; grplasso = derive2 { name="grplasso"; version="0.4-7"; sha256="0jf48ahc6d6biwx235dlvbk1papxkqbcnvxsr93p5047pjm02y3a"; depends=[]; }; grplassocat = derive2 { name="grplassocat"; version="1.0"; sha256="0pi5vq7yqg0ha91y6296ckshxyq3135cg6zcs9x6xba5m5024k4p"; depends=[grplasso]; }; @@ -10955,8 +11150,8 @@ in with self; { grpseq = derive2 { name="grpseq"; version="1.0"; sha256="187c3y3rsls1a66phb6kvndfh0rz7h8kl6w10gi9k6r8q6isvl9i"; depends=[mvtnorm]; }; grr = derive2 { name="grr"; version="0.9.5"; sha256="0arbcgrvhkwb5xk4nry1ffg2qj0v8ivhjghdr505ib4357g0c9i9"; depends=[]; }; grt = derive2 { name="grt"; version="0.2.1"; sha256="1dw5rjs82r82l6qryyyq9cczm770v4iv60d7pi1nb4b0733ndbd5"; depends=[MASS]; }; - grwat = derive2 { name="grwat"; version="0.0.2"; sha256="1aaiv6q9aiw7j4fdmcgwbwv7wb6hw396h1k5ch0kl8arg6bn2s26"; depends=[crayon dplyr ggplot2 kableExtra knitr lubridate magrittr mblm progress Rcpp rlang rmarkdown stringr tidyr trend zoo]; }; - gsDesign = derive2 { name="gsDesign"; version="3.5.0"; sha256="06m4l1p7pwhs9lxnzjivg5xaygb3lfp0zdfvwzw7m6ngx12saglg"; depends=[dplyr ggplot2 gt magrittr rlang tibble tidyr xtable]; }; + grwat = derive2 { name="grwat"; version="0.0.4"; sha256="10sv1kzf9z1c27d99rvxvx1gmhga6rj1mcyfkvyg93gd8i1jwxg9"; depends=[cli dplyr ggplot2 lubridate magrittr mblm R_utils Rcpp rlang stringr tidyr trend zoo]; }; + gsDesign = derive2 { name="gsDesign"; version="3.6.0"; sha256="0jydax7gmhn2qx51w0d4ykyx4vl0klnz2dccl3d0cas7kkpfbj1y"; depends=[dplyr ggplot2 gt magrittr r2rtf rlang tibble tidyr xtable]; }; gsDesign2 = derive2 { name="gsDesign2"; version="1.1.0"; sha256="04n0nlkw1zab3m802a8jrwgic4g8likv7x3zba92qipppfvjzqph"; depends=[corpcor dplyr gsDesign gt mvtnorm npsurvSS Rcpp rlang tibble tidyr]; }; gsEasy = derive2 { name="gsEasy"; version="1.4"; sha256="1m3vrwcbkswr0b6rzyydxaibda6lv1m9kmxm9yh2sphk4mdwqxxj"; depends=[ontologyIndex Rcpp]; }; gsMAMS = derive2 { name="gsMAMS"; version="0.7.1"; sha256="00h6b0zxhiqpgngmwazx2lpzvy3x85mbishmmqn51v4k3568dw52"; depends=[mvtnorm survival]; }; @@ -10971,10 +11166,11 @@ in with self; { gsignal = derive2 { name="gsignal"; version="0.3-5"; sha256="0qyb8p8vg7sfx6kgib03lwidxh9my669asbjwvbpwzxd4sb51gsf"; depends=[pracma Rcpp]; }; gsisdecoder = derive2 { name="gsisdecoder"; version="0.0.1"; sha256="1h7a9j4gsdk8nasfkzfizlarx335ra0j0yz98a2000v2qzm2a5qy"; depends=[Rcpp]; }; gsl = derive2 { name="gsl"; version="2.1-8"; sha256="159d782nz7fqhgcj3fa79hlmkdrqnkd0ypgzcl71kgas92zhjdpk"; depends=[]; }; - gslnls = derive2 { name="gslnls"; version="1.1.2"; sha256="0x71rdjr39my7p6a6p9im343sdbpwqns86x4mryygxllp8zvwcgm"; depends=[Matrix]; }; + gslnls = derive2 { name="gslnls"; version="1.2.0"; sha256="1nxlxm882nbpyjnjlfbsj5wz03nv3kd0jylda7wpw51nqf1jp0mz"; depends=[Matrix]; }; gsloid = derive2 { name="gsloid"; version="0.2.0"; sha256="1z9fci21870d8z7qsc8hzj3vxlxrr7gxy1vibga3acayxz21lhvs"; depends=[]; }; gsmoothr = derive2 { name="gsmoothr"; version="0.1.7"; sha256="00z9852vn5pj04dhl3w36yk0xjawniay6iifw1i7fd8g98mgspxp"; depends=[]; }; gson = derive2 { name="gson"; version="0.1.0"; sha256="10d3v543bvsyrwg3dm04xpzxjvmba1d1fhcf2zfb3l36pvjvxp8l"; depends=[jsonlite rlang tidyr]; }; + gspcr = derive2 { name="gspcr"; version="0.9.4.1"; sha256="1ankzsqq1b662831bm3kdlzzdpl6nw05yira5yx36pm0vnhhcn7y"; depends=[dplyr FactoMineR ggplot2 MASS MLmetrics nnet PCAmixdata reshape2 rlang]; }; gsrs = derive2 { name="gsrs"; version="0.1.1"; sha256="0x5fll59l000dqszy0gmhsfqgpaljc57j1grqg5c7y1p3vji38in"; depends=[doParallel foreach MASS]; }; gsrsb = derive2 { name="gsrsb"; version="1.2.1"; sha256="0b2dzacd5axd4pfhv0q1gd7hk0fbfj738zdlabzs8dc9737bykiq"; depends=[ldbounds mvtnorm xtable]; }; gss = derive2 { name="gss"; version="2.2-7"; sha256="0siz9xmfiirkg8sb0amzyp7k1mjbgz8jmsmlc8schw65093i84rv"; depends=[]; }; @@ -10997,10 +11193,9 @@ in with self; { gtfstools = derive2 { name="gtfstools"; version="1.2.0"; sha256="03gc784dvskvg8m0fcqc966ka0slnh10in5gk7bba8h7lnfb893w"; depends=[checkmate cpp11 curl data_table gtfsio processx sf sfheaders units zip]; }; gtheory = derive2 { name="gtheory"; version="0.1.2"; sha256="1xc1jl69z5csalqk3hx83s53awcl1fjq6p0x2pczhs7dsvwd6lks"; depends=[lme4]; }; gto = derive2 { name="gto"; version="0.1.1"; sha256="111jla0acxpb749ncr77lnbxk7hmsv8syin1p2cs1d1fr2jxkzs1"; depends=[gt magrittr officer rlang xml2]; }; - gtools = derive2 { name="gtools"; version="3.9.4"; sha256="04gihp78x2caahqvf0mlv1cqy1m121l6hkdvbp01r2z99wcqpksr"; depends=[]; }; - gtop = derive2 { name="gtop"; version="0.2.0"; sha256="1nvvbf181x0miw3q0r2g0nklz29ljdsd07cazaajfls7pmhi0xw9"; depends=[hts lassoshooting quadprog]; }; + gtools = derive2 { name="gtools"; version="3.9.5"; sha256="0jqpvygxgr4m1rgaj5rzd048fwxvpcr4n1vx8bfabc9d2p0vdsfy"; depends=[]; }; gtranslate = derive2 { name="gtranslate"; version="0.0.1"; sha256="1ag0qkp5dnsj6vnwjyf4lw7kr37xzj5lkkr0b2y24pfx7alb33sv"; depends=[httr rvest]; }; - gtreg = derive2 { name="gtreg"; version="0.2.0"; sha256="0ivg1chwn4igy9df5c8dmq5r2ryjwasqvdi8q4xfysjxij97hd6s"; depends=[broom_helpers cli dplyr forcats glue gtsummary purrr rlang stringr tibble tidyr]; }; + gtreg = derive2 { name="gtreg"; version="0.3.0"; sha256="1kvzi16ziy37zyal2ibgfpzbr5qf26z94v1381qsqhiwn382xng9"; depends=[broom_helpers cli dplyr forcats glue gtsummary purrr rlang stringr tibble tidyr]; }; gtrendsR = derive2 { name="gtrendsR"; version="1.5.1"; sha256="05bfcc77bg2ndl83l0lv7rs4slxcflv9h2pfij8a3j1k9r9lwp2x"; depends=[anytime curl ggplot2 jsonlite]; }; gtsummary = derive2 { name="gtsummary"; version="1.7.2"; sha256="02jbsdv8wwncnrmqmf12pz3ld759s8ll5dl5rrxv8ad6qgqjbhnx"; depends=[broom broom_helpers cli dplyr forcats glue gt knitr lifecycle purrr rlang stringr tibble tidyr vctrs]; }; guaguas = derive2 { name="guaguas"; version="0.3.0"; sha256="0ngdwg297ndn763vx0qnvcsy5bhsr026hv8hvwgrz5w32mpw252d"; depends=[]; }; @@ -11014,20 +11209,22 @@ in with self; { gumboot = derive2 { name="gumboot"; version="1.0.1"; sha256="12lbnhgcc6l76g6s3bcj46p1s4ddqazwspmkn97ybwcydma44x7m"; depends=[dplyr ggplot2 lubridate ncdf4 reshape2 stringr]; }; gunit = derive2 { name="gunit"; version="1.0.2"; sha256="10n1mjhb3k0npcp3cmw3pm2035vda3341i0gfxni27xdhggpm0rk"; depends=[magrittr stringr tibble units]; }; gunsales = derive2 { name="gunsales"; version="0.1.2"; sha256="02vz16lhym72vvf48yai1g371wygdlmi63a6ylc147l0b69jgw31"; depends=[data_table dplyr ggplot2 seasonal x13binary zoo]; }; - gustave = derive2 { name="gustave"; version="0.4.4"; sha256="1zr9iy4977b80pn4yfdr890ka258af8khid14xjp6mjj3wczlmvp"; depends=[Matrix]; }; + gustave = derive2 { name="gustave"; version="1.0.0"; sha256="0qja3f0925hhaq19xic0x9yygckjnym0daj2fzp36p7rsb4w0ga6"; depends=[Matrix]; }; + gutenbergr = derive2 { name="gutenbergr"; version="0.2.4"; sha256="0hx9mrykkc7jqf5pl3k9y5i7pv8v9pwija8swv6s5p1gbmg56vg6"; depends=[cli dplyr glue lazyeval magrittr purrr readr stringr urltools]; }; gvc = derive2 { name="gvc"; version="6.4.0"; sha256="1wwsl0vz801324558qwzy241ws6qics8nrd6yyzkwrfz2kyfmya0"; depends=[decompr diagonals]; }; gvcR = derive2 { name="gvcR"; version="0.1.0"; sha256="0r54924b9a65k11p8y3p7jxbvmpb7s7vs87v65hhl98gxacj5hk8"; depends=[dplyr eda4treeR lme4 magrittr]; }; gvlma = derive2 { name="gvlma"; version="1.0.0.3"; sha256="16dhd407bwjs91c3p9kk43646197s7n9vbyghxb4ckrpv3fsaxp0"; depends=[]; }; gwaRs = derive2 { name="gwaRs"; version="0.3.0"; sha256="1mjwsf1sbrd88psiz6f74zddv1wvhpxk5nxbfjpdrxs74rkc36fs"; depends=[data_table dplyr ggplot2 ggrepel RColorBrewer scales tidyr]; }; gwasforest = derive2 { name="gwasforest"; version="1.0.0"; sha256="122fg4pc409lvw4yvrc8ijm6d6j29b4aacd319a16caxkkydgwlb"; depends=[colorspace data_table dplyr ggplot2 ggrepel glue]; }; - gwasrapidd = derive2 { name="gwasrapidd"; version="0.99.14"; sha256="07i71z44gkvwcx2dcbccz0sf68161drrhhd86jvq30nv20wxhmhx"; depends=[assertthat concatenate dplyr glue httr jsonlite lubridate magrittr pingr plyr progress purrr rlang stringr testthat tibble tidyr urltools]; }; + gwasrapidd = derive2 { name="gwasrapidd"; version="0.99.17"; sha256="1fmymw7vm4ana86mwf8figda20l601c7c6nr14444647x8cimlhx"; depends=[assertthat concatenate dplyr glue httr jsonlite lubridate magrittr pingr plyr progress purrr rlang stringr testthat tibble tidyr urltools writexl]; }; gwavr = derive2 { name="gwavr"; version="0.2.0"; sha256="0wlbyl3r4sxcjyfbymcrynkcaqmqivl4qhh14nxjrg8lji47lad6"; depends=[dplyr elevatr httr jsonlite leaflet leaflet_extras magrittr miniUI nhdplusTools promises purrr scales sf shiny shinyWidgets terra tidyr units whitebox]; }; gwbr = derive2 { name="gwbr"; version="1.0.5"; sha256="08yhg56i1xrkmfcyr87gz0w6mzsm0isg3fjm6kmmgsq522cj3jjb"; depends=[]; }; + gwid = derive2 { name="gwid"; version="0.1.0"; sha256="13r286v6ckp64y36x8av8rlsvwh6ynzvi378l9xxxxfzc26w3zij"; depends=[data_table gdsfmt ggplot2 Matrix piggyback plotly RcppRoll SNPRelate]; }; gwpcormapper = derive2 { name="gwpcormapper"; version="0.1.3"; sha256="0d8skx6rxas5qvhg7ykhymrzd6dawj45421vr66r4wi4hbdfjbzx"; depends=[attempt config corpcor crosstalk dplyr DT geodist glue golem htmltools leaflet pkgload plotly processx Rcpp sf shiny shinydashboard shinyjs viridis]; }; gwrpvr = derive2 { name="gwrpvr"; version="1.0"; sha256="0x15nv2pfv99c04lgs6q6hgczarld34xc4aqw9bn179m7j02v6m3"; depends=[]; }; gwrr = derive2 { name="gwrr"; version="0.2-2"; sha256="1pn84056fdrrjq8m13671hn4gvz40z0jsi6r5kv5b82fwzj4g57y"; depends=[fields lars]; }; gym = derive2 { name="gym"; version="0.1.0"; sha256="0vcwzgawqwjsf65hr1mbjkz3px8zsibfkn42jpsg39n13jpfjq8v"; depends=[httr jsonlite]; }; - gyro = derive2 { name="gyro"; version="1.3.0"; sha256="01ddkr5f7xqccl2vqwqyv4d91y0008vyzbw211zii2x2c48l4r24"; depends=[clipr cxhull Morpho plotrix purrr randomcoloR RCDT Rcpp rgl rstudioapi Rvcg]; }; + gyro = derive2 { name="gyro"; version="1.4.0"; sha256="0zgzqgfd97bxb4crijlc9byak4dl5zrhp6ynch8yda8m3rx1gz92"; depends=[clipr colorsGen cxhull Morpho plotrix Polychrome purrr RCDT Rcpp rgl rstudioapi Rvcg]; }; h0 = derive2 { name="h0"; version="1.0.1"; sha256="0nw671dgf50zqmw6j8znig6ksqf68hbshc8v87dcig70j1sqab4k"; depends=[]; }; h2o = derive2 { name="h2o"; version="3.42.0.2"; sha256="16wjcaskwkjw5bn4mj73qsywd9qcp8q906p3sfsr1vdk9qgm7bls"; depends=[jsonlite RCurl]; }; h2o4gpu = derive2 { name="h2o4gpu"; version="0.3.3"; sha256="004sskj3a1mzjfh86m0rq02z1f3kd6650bzv1d3j8pj0xdmqb86c"; depends=[magrittr reticulate]; }; @@ -11047,34 +11244,35 @@ in with self; { hacksaw = derive2 { name="hacksaw"; version="0.0.2"; sha256="1ls4l53bsaxyd6lwka9z9sb6ypa2ymbxpfxhsj9k966031jv2vk3"; depends=[dplyr magrittr purrr rlang tibble tidyselect zeallot]; }; hacksig = derive2 { name="hacksig"; version="0.1.2"; sha256="0sc35vyi00r2b3hgn1xw2zffd704adschjwhx0niv5a1l33dxbkp"; depends=[dplyr future_apply rlang tibble tidyr]; }; hagis = derive2 { name="hagis"; version="3.1.11"; sha256="1s4n08zy7agqs8a1jzzyyba93j1nnd0d3bz63j5xd3yvw36brzjf"; depends=[data_table ggplot2 pander]; }; + hahmmr = derive2 { name="hahmmr"; version="1.0.0"; sha256="19bds84pkimr71dy1365b71k7ihn7x86yalgcmagvkxgygpg3409"; depends=[data_table dplyr GenomicRanges ggplot2 glue IRanges patchwork Rcpp RcppArmadillo roptim stringr tibble zoo]; }; hakaiApi = derive2 { name="hakaiApi"; version="1.0.2"; sha256="0lxqk4cp1s1sm3nbsp74q1bpklmph620c2f1kii97h6yimnq9bi0"; depends=[dplyr httr R6 readr tibble]; }; - hal9001 = derive2 { name="hal9001"; version="0.4.3"; sha256="132qnrk6rm2qc5gw17iw61plx1ghnyzi7km8bp36vnqn19x9wj7j"; depends=[assertthat data_table glmnet Matrix origami Rcpp RcppEigen stringr]; }; + hal9001 = derive2 { name="hal9001"; version="0.4.6"; sha256="1p88rpm4alkr56w4cjl8sxj6ylq991dsny11njcdx5rzc25jh8qi"; depends=[assertthat data_table glmnet Matrix origami Rcpp RcppEigen stringr]; }; haldensify = derive2 { name="haldensify"; version="0.2.3"; sha256="071lgx6j92n40bjlrp3khmnavvkla371rkm1ssx20ig5pkay23pw"; depends=[assertthat data_table dplyr future_apply ggplot2 hal9001 matrixStats origami Rdpack rlang rsample scales tibble]; }; halfcircle = derive2 { name="halfcircle"; version="0.1.0"; sha256="1gbqbv3cn8w09i3f2ji3qq0snb4fy9243y12agw686fx46dfmhxs"; depends=[scales]; }; halfmoon = derive2 { name="halfmoon"; version="0.1.0"; sha256="19pclcrcbmmf1b1q2dhwh17a67xif992y3w6685si5bn0ripsj6h"; depends=[cli ggplot2 tidyselect tidysmd]; }; - halk = derive2 { name="halk"; version="0.0.4"; sha256="1v6b8i1m0sdqk6gfjzfz35b8y1klb97m29m11wgpnshwzqxnfij2"; depends=[dplyr magrittr purrr rlang tibble tidyr tidyselect]; }; + halk = derive2 { name="halk"; version="0.0.5"; sha256="109xrz7wm0zsl4kkr5fx0igiwcq2lgkxsws4g1m8k1nhnz1aidbn"; depends=[dplyr magrittr purrr rlang tibble tidyr tidyselect]; }; hamlet = derive2 { name="hamlet"; version="0.9.6"; sha256="076fh28grlrv38qywshi79m84jsz1ck9k4n0rg4svvr3gqkdbcn2"; depends=[]; }; - handcodeR = derive2 { name="handcodeR"; version="0.1.1"; sha256="1q9pdlkjsl2p15c3k2hhnksbc45sh4clm4zvfjs7yca6d37q1vjh"; depends=[shiny shinyWidgets]; }; + handcodeR = derive2 { name="handcodeR"; version="0.1.2"; sha256="1icr2474y2q2jnax7ps9lmh13hkrpq4z2yacffc1scm2cpg18y6a"; depends=[shiny shinyWidgets]; }; handlr = derive2 { name="handlr"; version="0.3.0"; sha256="0l0jwlslz2pyg7q447k56acfhgmx5njsriqdrwd02zzbsc3g6wm5"; depends=[crul jsonlite mime urltools xml2 yaml]; }; - handwriter = derive2 { name="handwriter"; version="2.0.2"; sha256="0l3vg76kwqwxzhn62y4sbl8nap219yppk9rak36w04hryxdahdf1"; depends=[doParallel dplyr foreach futile_logger ggplot2 igraph lpSolve magick mc2d png purrr Rcpp RcppArmadillo reshape2 Rfast rjags stringr tidyr]; }; + handwriter = derive2 { name="handwriter"; version="2.0.3"; sha256="04n773va7drfdj2wi0v95jivzhzz9cy3n8dii069wjsbx24xmsff"; depends=[doParallel dplyr foreach futile_logger ggplot2 igraph lpSolve magick mc2d png purrr Rcpp RcppArmadillo reshape2 Rfast rjags stringr tidyr]; }; handyFunctions = derive2 { name="handyFunctions"; version="0.1.0"; sha256="0y476acqdm73y19k8s9c9vy8xryyjg16pay3vikslwccv7kgsigz"; depends=[ggplot2 rlang stringr]; }; handyplots = derive2 { name="handyplots"; version="1.1.3"; sha256="0pcl0iichdw2lkv8y00mv6n6c0rvrnsk75ka5lwm2g7b64pphsvk"; depends=[]; }; hans = derive2 { name="hans"; version="0.1"; sha256="0hh2nlzxs2kj93yb7yfm873m6nymjw5qmkin3qqn3acza6dr0k6q"; depends=[Rcpp]; }; hansard = derive2 { name="hansard"; version="0.8.0"; sha256="00mcy58nhlphb0v0wchbaw1qamm0435s09nxxw6rr5z872rhyf5a"; depends=[dplyr jsonlite lubridate snakecase tibble tidyr]; }; hapassoc = derive2 { name="hapassoc"; version="1.2-9"; sha256="09ijc4sbw743z74fzklmvig11ndkycg6j86k4214wfsj1yj6j9x6"; depends=[]; }; haplo_ccs = derive2 { name="haplo.ccs"; version="1.3.2"; sha256="103i1fxk990drlsdhjrh9p6rp05g7gqzmlqfcdx9a1di1qrhw5qh"; depends=[haplo_stats survival]; }; - haplo_stats = derive2 { name="haplo.stats"; version="1.9.3"; sha256="1nwxmx3v0085bdr14sr1n4wpipyp1bdq9qhx2gxmx9h3l02glkis"; depends=[arsenal rms]; }; + haplo_stats = derive2 { name="haplo.stats"; version="1.9.5"; sha256="17h7nxpc5ggxwpc4j4cxf7n0qglc93vhwd4ljwa8ic33x3yab673"; depends=[arsenal rms]; }; haploR = derive2 { name="haploR"; version="4.0.7"; sha256="1s8f556d9x5h76gyl4wggcx01f4qrx0fp5mz46yk2x9qmwiir89v"; depends=[DT httr plyr RCurl RJSONIO RUnit tibble XML]; }; haplotyper = derive2 { name="haplotyper"; version="0.1"; sha256="0pcshlh29c4zazhkcq4371kqh9inrbx494y5a1qb1k2c92fkax31"; depends=[]; }; haplotypes = derive2 { name="haplotypes"; version="1.1.3.1"; sha256="0w61ww76fq4iqzi6w9q2649925m5agnjaqhij40dwxyzsyqv9zjd"; depends=[ape network phangorn plotrix sna]; }; - happign = derive2 { name="happign"; version="0.2.0"; sha256="1incrlf6frhrb2sb6w0x6fcgdy4vvr9qkcsq3r40pgpkkczdidl4"; depends=[archive dplyr httr2 jsonlite sf terra xml2]; }; + happign = derive2 { name="happign"; version="0.2.2"; sha256="1nzp41rnc5xjdhl9234gg646qrl86w7w8m3q46zxzdh3r5vvg43z"; depends=[archive dplyr httr2 jsonlite sf terra units xml2]; }; happytime = derive2 { name="happytime"; version="0.1.0"; sha256="03iblwb6w2dh9sibfi4nlswidck13hzsn7123838zp4sxfnrp041"; depends=[]; }; hapsim = derive2 { name="hapsim"; version="0.31"; sha256="0jw6iw89d4y8wjy58biv40szp123ql7frz1mmdjdxljmwaby963h"; depends=[MASS]; }; - harbinger = derive2 { name="harbinger"; version="1.0.707"; sha256="0ddpr6m4y09driqbbvrhdfmqfmrfbszbcf08bpk9ykxd6wrh55zz"; depends=[daltoolbox dplyr dtwclust forecast ggplot2 reticulate rugarch stringr tsmp TSPred]; }; + harbinger = derive2 { name="harbinger"; version="1.0.737"; sha256="0amqpx3pfvnx30dknxs4759b7c4qd4839zkrwf4ayg5klc06v7zd"; depends=[changepoint daltoolbox dplyr dtwclust forecast ggplot2 reticulate rugarch stringr strucchange tsmp TSPred]; }; hardhat = derive2 { name="hardhat"; version="1.3.0"; sha256="0bp83yw7j34iwir2f73ainic11cdz0q18m5v1kbx8vdsw84z17zy"; depends=[cli glue rlang tibble vctrs]; }; harmonicmeanp = derive2 { name="harmonicmeanp"; version="3.0"; sha256="17irfw8788yhh36698p9w8wab6wcin1yzfinlbs3gdg70d42zcnd"; depends=[FMStable]; }; harmonizer = derive2 { name="harmonizer"; version="0.3.2"; sha256="05iiph9zx4wllviiwr92bhiq24bmi62iq9wjn8j91dvascd6xh5i"; depends=[]; }; - harmony = derive2 { name="harmony"; version="1.1.0"; sha256="0ry1d40l3f75by58ylm3f118inyb2r9kxahimbh93rwrgv5xbkbv"; depends=[cowplot dplyr ggplot2 Matrix Rcpp RcppArmadillo RcppProgress RhpcBLASctl rlang tibble]; }; + harmony = derive2 { name="harmony"; version="1.2.0"; sha256="1df7bb9ba3m0c44fhmh8cs4hlkh4fffjwm8rz7l87lf5pdy7sg56"; depends=[cowplot dplyr ggplot2 Matrix Rcpp RcppArmadillo RcppProgress RhpcBLASctl rlang tibble]; }; harmonydata = derive2 { name="harmonydata"; version="0.1.1"; sha256="1n90zm31himxwaaan92fbar0nqvxgn41i38vshv42wa77641lr1m"; depends=[base64enc httr jsonlite uuid]; }; harrietr = derive2 { name="harrietr"; version="0.2.3"; sha256="0n6vsqysj4ijh06z6nqmj8x1z4w9711dxhbfp8p8fwi0l75pj0cj"; depends=[ape dplyr ggtree lazyeval magrittr rlang tidyr]; }; harrypotter = derive2 { name="harrypotter"; version="2.1.1"; sha256="1j3sv0rpp4lcrf09j4a3an4lkwi2x1z18iv62fk6c2kpp9b14b8r"; depends=[ggplot2 gridExtra]; }; @@ -11082,18 +11280,18 @@ in with self; { hashids = derive2 { name="hashids"; version="0.9.0"; sha256="0233qly4rb1g4znxm9h9h8gskzrjyav6nd26xkdl7990m5hcbcwh"; depends=[]; }; hashr = derive2 { name="hashr"; version="0.1.4"; sha256="10rvq4rvg7fds2ylh21lri4wlvj870bncqq7kma7rf89rg5x1jz6"; depends=[]; }; hasseDiagram = derive2 { name="hasseDiagram"; version="0.2.0"; sha256="1ni4wzj8g6qmpgz1xj62vawkcpm3jr4jqqr1xaxlh5nzbj9fn57h"; depends=[graph Rgraphviz]; }; - haven = derive2 { name="haven"; version="2.5.3"; sha256="1qxp0hp7clmd70383lsbiijq1i5037zv4haja60czw09mnprjncs"; depends=[cli cpp11 forcats hms lifecycle readr rlang tibble tidyselect vctrs]; }; + haven = derive2 { name="haven"; version="2.5.4"; sha256="0dd83v3bfs7and9ydx35m8zw0md3wgchwpnvj6yllixa6yxk25cy"; depends=[cli cpp11 forcats hms lifecycle readr rlang tibble tidyselect vctrs]; }; hawkes = derive2 { name="hawkes"; version="0.0-4"; sha256="1ghwq3icxwmrai3xn9r8cnvlh3z3j18lznhw1bm31h9mkkp2dk0a"; depends=[Rcpp RcppArmadillo]; }; hawkesbow = derive2 { name="hawkesbow"; version="1.0.2"; sha256="0abbarpwlbasgmp0cr8144x2aqkmqf2i99pqd9g9sp9bxbg66056"; depends=[BH nloptr Rcpp RcppArmadillo]; }; hazer = derive2 { name="hazer"; version="1.1.1"; sha256="1d1qj6mamgxlvxq2hjik69zfzackjz5819iss98jf5gdbdngw41x"; depends=[]; }; hbal = derive2 { name="hbal"; version="1.2.8"; sha256="15id1r3h3h5pv0yahkcgzav8qhacha4wn688p7hmxpsq84d63xky"; depends=[estimatr ggplot2 glmnet gridExtra gtable nloptr Rcpp RcppEigen stringr]; }; - hbamr = derive2 { name="hbamr"; version="1.2.0"; sha256="0c70gizc5q4dg6by6smsh21v0am3hmskcx6lmb8mscid3q1gmbm5"; depends=[BH dplyr ggplot2 loo matrixStats pbmcapply plyr RColorBrewer Rcpp RcppEigen RcppParallel rlang rstan rstantools StanHeaders tidyr]; }; + hbamr = derive2 { name="hbamr"; version="2.0.1"; sha256="1n4lz92mnk6wna7q3bln1w4lafsgfnqv03jkz0vj8kpv9d5gq03g"; depends=[BH dplyr ggplot2 loo matrixStats pbmcapply plyr RColorBrewer Rcpp RcppEigen RcppParallel rlang rstan rstantools StanHeaders tidyr]; }; hbbr = derive2 { name="hbbr"; version="1.1.2"; sha256="09sph4vliyb63pd0abq02ix5wz373r70kgldw44fm279zq4z772h"; depends=[R2jags]; }; hbim = derive2 { name="hbim"; version="1.1.2"; sha256="1wgzxmbdzigh9q6q2s4vfh58p8whmyp0jckfga1li5cibqbvpaf0"; depends=[mvtnorm]; }; hbmem = derive2 { name="hbmem"; version="0.3-4"; sha256="0qhxc784zhilxhijlsykl10cqlxk9ll8m2cz9s1cmz76hlvrn0y9"; depends=[]; }; hbsae = derive2 { name="hbsae"; version="1.2"; sha256="0fg782gxivkkwhqvxf09j1q20f2dqm7bd1y9bp99fy7mg88zp0gn"; depends=[Matrix]; }; hcandersenr = derive2 { name="hcandersenr"; version="0.2.0"; sha256="0r8z8kb9hwvgcsxbd7arbmqclhwlbcjpnf3p9mp5vgyxm84iz515"; depends=[]; }; - hce = derive2 { name="hce"; version="0.5.8"; sha256="15a7hbra5ian5bs60x675qsf2qgvaxl04nn5m6np11iswkb31dm1"; depends=[]; }; + hce = derive2 { name="hce"; version="0.5.9"; sha256="076y9ic49slxqxzv3i4rjfnmmsvna7yv86jnp7w41lnn4743jl2l"; depends=[]; }; hchinamap = derive2 { name="hchinamap"; version="0.1.0"; sha256="1pia593g50zf3286f9g51slkvrpj1iy7lws9d7a3nqgb2v3yji1y"; depends=[htmlwidgets]; }; hcidata = derive2 { name="hcidata"; version="0.1.0"; sha256="16qzll0rhfc6szi9y5hxycq5462jm78kla70fnv1sqw7n34pvpg5"; depends=[Rdpack]; }; hclust1d = derive2 { name="hclust1d"; version="0.1.1"; sha256="1cari4ms1j5x2i5m9yd50j7alf18k7z053yhqbck0hs2mck9jx86"; depends=[Rcpp]; }; @@ -11102,12 +11300,13 @@ in with self; { hda = derive2 { name="hda"; version="0.2-14"; sha256="0azfxyws7yslcqplfddmdp5ngk91j5h7llvrg77yh5z0kkd09j1b"; depends=[e1071]; }; hdbinseg = derive2 { name="hdbinseg"; version="1.0.2"; sha256="0q5lfczymrd4ln04lbdysncx6ylcsgrk69mhvm7jjk7pybrpm9wq"; depends=[doParallel foreach iterators Rcpp RcppArmadillo]; }; hdbm = derive2 { name="hdbm"; version="0.9.0"; sha256="0lvaica195chl6bb10wvvr7fbmh8b954fpxcm9r0gyp0d0i2a2w4"; depends=[Rcpp RcppArmadillo]; }; + hdbma = derive2 { name="hdbma"; version="1.0"; sha256="0dj9hh6x5096znl7naga0qrx2fwr4crgjk7fyk5vxn6v1gl3llrh"; depends=[gplots lattice MASS R2jags survival]; }; hdcate = derive2 { name="hdcate"; version="0.1.0"; sha256="1jv6y38lzvm75s44n1pjvkkf5xcvrvclil318gvx54b16hvgggcg"; depends=[caret hdm KernSmooth locpol R6]; }; hdd = derive2 { name="hdd"; version="0.1.1"; sha256="1xl5p56qrnvli2ga1p8xyvgsp17jyjm0xng5prigyngnpj327qpk"; depends=[data_table dreamerr fst readr]; }; hddplot = derive2 { name="hddplot"; version="0.59-2"; sha256="1q7mz7yxb4qvprj431kxv46cf9myckkycfbi6nzbkqw8mpwg02qy"; depends=[MASS multtest]; }; hdf5r = derive2 { name="hdf5r"; version="1.3.8"; sha256="0arhs9z3rhqkb3pkhdgf1kgyhzrgvrrfjj4phijpji2przi82cmm"; depends=[bit64 R6]; }; - hdf5r_Extra = derive2 { name="hdf5r.Extra"; version="0.0.2"; sha256="0fpkgq845k2z63i0yl160hvnv7x857k81likdgasbw1x85rlihaf"; depends=[checkmate dplyr easy_utils hdf5r Matrix MatrixExtra rlang]; }; - hdflex = derive2 { name="hdflex"; version="0.1.0"; sha256="0423grfw56pwjh3km4ib55vgrzl5kk23j3g8f9d96jyjzkkxnbmi"; depends=[checkmate dplyr Rcpp RcppArmadillo roll stringr]; }; + hdf5r_Extra = derive2 { name="hdf5r.Extra"; version="0.0.4"; sha256="1p9r577k4fakn0j3bdamq8wswga4xpasj1d3f0iq73xpwydk6vk0"; depends=[checkmate dplyr easy_utils hdf5r Matrix MatrixExtra rlang]; }; + hdflex = derive2 { name="hdflex"; version="0.2.0"; sha256="1kq11mfx5npxhakfkb3iyf9xxdr2nsa5p770fw0fz1si5bgzb5js"; depends=[checkmate dplyr Rcpp RcppArmadillo roll stringr]; }; hdfqlr = derive2 { name="hdfqlr"; version="0.6-2"; sha256="07lfr0vblahh3xhckwmzbmlja0janb73qkl4663mqgp6xk21jmi1"; depends=[]; }; hdi = derive2 { name="hdi"; version="0.1-9"; sha256="0k35zqz58lcx5p7ijhks4j7kqp553zggvrx4lh6k4s85lp601x22"; depends=[glmnet linprog MASS scalreg]; }; hdiVAR = derive2 { name="hdiVAR"; version="1.0.2"; sha256="1vvsi1irnbjnyliz9wh783kbjkyz8agfbrx10436fsf8x33d1qs8"; depends=[abind lpSolve]; }; @@ -11120,12 +11319,12 @@ in with self; { hdrcde = derive2 { name="hdrcde"; version="3.4"; sha256="16qlk44cjvn2s0vzaf915df65ksdx20dbxhy7fpdqins46hccha3"; depends=[ash ggplot2 KernSmooth ks locfit RColorBrewer]; }; hds = derive2 { name="hds"; version="0.8.1"; sha256="1smg5ixrl7f2x3wn7s5i26dyadn5sigpf4jsk236z1bhnz617ax4"; depends=[survival tensor]; }; headliner = derive2 { name="headliner"; version="0.0.3"; sha256="1llq007b032q526csfxxwrrwaxkzgq8wl4g4cr65j8biwwynpaba"; depends=[dplyr glue lubridate purrr rlang tibble tidyr]; }; - healthcare_antitrust = derive2 { name="healthcare.antitrust"; version="0.1.3"; sha256="0m839fjklx2m52ilpbxpigjl7qphgk0hbi4rvjvx9y8gsp9xfnmd"; depends=[]; }; + healthcare_antitrust = derive2 { name="healthcare.antitrust"; version="0.1.4"; sha256="1584j0ljvxp4b1ly0gxs9sdsnvvg96f91x94v5xngr4zrvsc21ga"; depends=[]; }; healthfinance = derive2 { name="healthfinance"; version="0.1.0"; sha256="163zhdd5mqp0q872dmr3xzw2ppapnwp46rr7vkkfnglz635nxvpz"; depends=[ggplot2 lubridate readr scales shiny tibble]; }; healthyR = derive2 { name="healthyR"; version="0.2.1"; sha256="0wlw6sd187sw5ar58c4a5yz9fw0bc044cik1xsq54ipp4xprlnxp"; depends=[cowplot dplyr ggplot2 lubridate magrittr plotly purrr rlang scales sqldf stringr tibble timetk writexl]; }; healthyR_ai = derive2 { name="healthyR.ai"; version="0.0.13"; sha256="0qck4118f0kg9rfnmjc14qh7kdzvxh28rdlydhz8i5j91a6731a4"; depends=[broom dials dplyr forcats ggplot2 ggrepel h2o magrittr modeltime parsnip purrr recipes rlang tibble tidyr tune workflows yardstick]; }; healthyR_data = derive2 { name="healthyR.data"; version="1.0.3"; sha256="1bbxy7x7q1jn5l48li3pfiqisxrfw87nql20v5c2f06m67mn2mq8"; depends=[dplyr janitor rlang]; }; - healthyR_ts = derive2 { name="healthyR.ts"; version="0.2.11"; sha256="1pyrrx6hy9kgiaqcy4sb7gr89zcyd586h1b12j7h32f2faaggi03"; depends=[cowplot dplyr forcats ggplot2 hardhat lubridate magrittr modeltime parsnip plotly purrr recipes rlang stringi tibble tidyr timetk workflowsets]; }; + healthyR_ts = derive2 { name="healthyR.ts"; version="0.3.0"; sha256="1h8x47k239f8mmylpiydw7yf9r0synrzjhdk12a3nnbxbajn6iab"; depends=[cowplot dplyr forcats ggplot2 hardhat lubridate magrittr modeltime parsnip plotly purrr recipes rlang stringi tibble tidyr timetk workflowsets]; }; healthyverse = derive2 { name="healthyverse"; version="1.0.4"; sha256="1h3d8wq6if1nkqc1d3n6y0g7i7xsvx9ci09z3jvhqx62f464ybgm"; depends=[cli crayon dplyr healthyR healthyR_ai healthyR_data healthyR_ts magrittr purrr rlang rstudioapi tibble tidyAML TidyDensity]; }; heapsofpapers = derive2 { name="heapsofpapers"; version="0.1.0"; sha256="1b88ff4j6rh0qif43iyb12wipkkjmp5qx33qfzgffr5m54df4kfy"; depends=[aws_s3 curl dplyr fs magrittr rlang scales]; }; heatex = derive2 { name="heatex"; version="1.0"; sha256="0c7bxblq24m80yi24gmrqqlcw8jh0lb749adsh51yr6nzpap6i9n"; depends=[]; }; @@ -11144,7 +11343,7 @@ in with self; { hellorust = derive2 { name="hellorust"; version="1.2.0"; sha256="0x2lnbrii9z4kyd810rphcip9wpx7ibqx9b4fs5c5msrqa03amk3"; depends=[]; }; helminthR = derive2 { name="helminthR"; version="1.0.10"; sha256="0ssw0smxc5zx3d189fq8c6kdg6d7db1sd5iblhz54pg41j9fvqhq"; depends=[httr magrittr plyr rvest taxize xml2]; }; helsinki = derive2 { name="helsinki"; version="1.0.6"; sha256="1hsmxnfzbi8xvqz97rmq225w9prhxc558slmfxg03y5wpjqdpq4a"; depends=[curl dplyr httr jsonlite purrr sf xml2]; }; - hemispheR = derive2 { name="hemispheR"; version="0.2.0"; sha256="1cmh166jzq6vflirvwf4mvy76x3j8x9q6r1h1p6jbkm0b2hck7ci"; depends=[autothresholdr dplyr jpeg magrittr plotrix raster rlang scales sp tidyr]; }; + hemispheR = derive2 { name="hemispheR"; version="1.1.3"; sha256="13h6x73dzz7azzw251qqnqnva7bpagq78xcv88fbys9fjfy6w7bd"; depends=[autothresholdr dismo dplyr jpeg scales sf terra tidyr]; }; heplots = derive2 { name="heplots"; version="1.6.0"; sha256="01c4f2b7ja1q5cdzndgchf0ibrysd3m4d793diz680a8w47w11dh"; depends=[broom car magrittr MASS purrr rgl tibble]; }; here = derive2 { name="here"; version="1.0.1"; sha256="0srlr8h8qmr0wrmp7gs4g2ry5dni2hx8n947bik3s3a26f091v88"; depends=[rprojroot]; }; hereR = derive2 { name="hereR"; version="1.0.0"; sha256="0la67qdsq72x8k19v27g73fh6w04fdgfj1cxbd3a6w1sfvjvvy6z"; depends=[crul curl data_table flexpolyline jsonlite sf stringr]; }; @@ -11169,11 +11368,11 @@ in with self; { hexSticker = derive2 { name="hexSticker"; version="0.4.9"; sha256="0d9sz2cshn4lq18kd9fkgvjm3v29h0k22b6228rq2q3zhxi97ra0"; depends=[ggimage ggplot2 hexbin showtext sysfonts]; }; hexView = derive2 { name="hexView"; version="0.3-4"; sha256="01hiqyibsd4as7jcklzg09pl12la341mg561vn16z4jzdarfvkfc"; depends=[]; }; hexbin = derive2 { name="hexbin"; version="1.28.3"; sha256="0pyy97bh9xf9hijg3iw1z4ri01571r1fx7xqm3fjkzx4q48kbcqf"; depends=[lattice]; }; - hexfont = derive2 { name="hexfont"; version="0.3.1"; sha256="05p279ygpwdlmx4c9vdjs25k7yrgb4xp9cc05drjwncwh97qgj6v"; depends=[bittermelon]; }; + hexfont = derive2 { name="hexfont"; version="0.4.0"; sha256="0pi64rzrzjrfpbjpgvj8fpf81550jfsy5sjsvgc4a0gv9b1dswr6"; depends=[bittermelon]; }; hextri = derive2 { name="hextri"; version="0.9.17"; sha256="04kk1a029i1rz617s9i3jvpnxillc3k3b7g3nrbsbi37ik6qk5r4"; depends=[FNN hexbin]; }; hfhub = derive2 { name="hfhub"; version="0.1.1"; sha256="0s2fm8lx680ymn8srln6dyay0lp03mxhyv7p71aw892hdq1d2sm1"; depends=[cli curl filelock fs glue httr rlang urltools withr]; }; hflights = derive2 { name="hflights"; version="0.1"; sha256="1rb6finck13i6949i6hsgfk90q4ybxh1m3is2mlw2m6087bpzfbd"; depends=[]; }; - hfr = derive2 { name="hfr"; version="0.6.1"; sha256="1l0iy0gc4j3gqqz0h7cjzg0nmf45vklsfy4x04a7y8zvidn01glr"; depends=[corpcor dendextend quadprog RColorBrewer]; }; + hfr = derive2 { name="hfr"; version="0.6.2"; sha256="151pm2w7imkqgi3417pa6x67bsjw8lhn29r99f1saj96f43ig70a"; depends=[corpcor dendextend quadprog RColorBrewer]; }; hglasso = derive2 { name="hglasso"; version="1.3"; sha256="15sq5fk7iicglpyxdkh44mg112zij05ic4x3snhqyc2lx1hvp7cy"; depends=[fields glasso igraph mvtnorm]; }; hglm = derive2 { name="hglm"; version="2.2-1"; sha256="1lyxkvqzfll1qrz5c2km9ikhq0dm63x39by4vc1nmkd24yza93nc"; depends=[hglm_data MASS Matrix]; }; hglm_data = derive2 { name="hglm.data"; version="1.0-1"; sha256="0mw1s0kahsh9jmwkxysfy5f7vbld7mpzmdnnww6im5h21jhnczx2"; depends=[MASS Matrix sp]; }; @@ -11181,11 +11380,11 @@ in with self; { hgnc = derive2 { name="hgnc"; version="0.1.4"; sha256="180092gpcs3j94904ry42crs62knzrv926bp25dapigqqfj7jjqi"; depends=[dplyr hms httr jsonlite lubridate magrittr purrr readr rlang rvest stringr tibble]; }; hgutils = derive2 { name="hgutils"; version="0.2.11"; sha256="0l288fqymh2i4dngy909gi8b4c9hdis02gqwyyvy6r8xzisk4m44"; depends=[crayon dplyr limSolve lubridate magrittr stringr usethis]; }; hgwrr = derive2 { name="hgwrr"; version="0.3-0"; sha256="0m3h5zwdnj4l7i6nh0mrjj4wprajgazninzffxpy14g7fy907ifn"; depends=[Rcpp RcppArmadillo]; }; - hhh4contacts = derive2 { name="hhh4contacts"; version="0.13.2"; sha256="171ghvnjfm1bvz75ggxpl7w1ai8nsrdi7sy2szmc8wpzc8a1wb48"; depends=[surveillance]; }; + hhh4contacts = derive2 { name="hhh4contacts"; version="0.13.3"; sha256="1hxdf8mkcaimglpq6z2gk523w7xh3ih0c2m9mlqbgrgnysb22biy"; depends=[sp surveillance]; }; hhi = derive2 { name="hhi"; version="1.2.0"; sha256="1yl52c3nqdi8v60sr01l0vv8359803dm2i4c9ifazgj3h3a4h0yp"; depends=[ggplot2]; }; hhsmm = derive2 { name="hhsmm"; version="0.3.6"; sha256="0b7bjvhyva3858dv01s6r891jkk14gm01hjqsab32m9w1b4r477p"; depends=[CMAPSS magic MASS mice mvtnorm progress Rcpp Rdpack splines2]; }; hht = derive2 { name="hht"; version="2.1.6"; sha256="13q30difb84byy62rrkxq2hjjl1526pn8j4qvhm5g3cgivvby5ci"; depends=[EMD fields]; }; - hibayes = derive2 { name="hibayes"; version="3.0.0"; sha256="1vbad1x0scqq50w3lflgssqnyrhblk2hf6jczjxs4cbb0mny959n"; depends=[BH bigmemory CMplot Matrix Rcpp RcppArmadillo RcppProgress stringr]; }; + hibayes = derive2 { name="hibayes"; version="3.0.1"; sha256="1hl3p1vhknsdawds65yx95ghpj4rwyfgwhlln8xmxkfaw0rc7ymj"; depends=[BH bigmemory CMplot Matrix Rcpp RcppArmadillo RcppProgress stringr]; }; hiddenf = derive2 { name="hiddenf"; version="2.0"; sha256="0shc1kfiq527mkc5i97zcm51hsvknnhjg7dyfvbfqyk145v6sz00"; depends=[]; }; hidecan = derive2 { name="hidecan"; version="1.1.0"; sha256="08yhjgmcmrnrm6rm0vlzvizadvywcs1p6mchw1synxvclfaxyi28"; depends=[dplyr ggnewscale ggplot2 ggrepel purrr shiny tibble tidyr viridis vroom]; }; hierBipartite = derive2 { name="hierBipartite"; version="0.0.2"; sha256="1f6agxrv363wksi33b29v42hys90351ninb4li9m52n0kzv25m1f"; depends=[irlba magrittr]; }; @@ -11222,14 +11421,14 @@ in with self; { hint = derive2 { name="hint"; version="0.1-3"; sha256="00ppz8009cp0wbkmrxdg8x9jjqqb803bl6ki13hsqz07aya0j4iy"; depends=[]; }; hiphop = derive2 { name="hiphop"; version="0.0.1"; sha256="0k071kxf04b95f3z5y2h9dhnqrvzwgyhi3q26ghn3s76c155f1k1"; depends=[]; }; hippie = derive2 { name="hippie"; version="0.1.0"; sha256="1c31l1qgjk7m1gif78wxq0wxwla5d2gkpgql48aqc8i2m9i65k67"; depends=[rstudioapi sourcetools]; }; - hipread = derive2 { name="hipread"; version="0.2.3"; sha256="02zqzy7nv5il1da9h2kf9c87yzbnww0kmywbjsbhfp4zp98xki84"; depends=[BH R6 Rcpp rlang tibble]; }; + hipread = derive2 { name="hipread"; version="0.2.4"; sha256="06z20kxswamhs8abjk6ff7xqhisaixw9ygz1831n38nl489vjpip"; depends=[BH R6 Rcpp rlang tibble]; }; hisse = derive2 { name="hisse"; version="2.1.11"; sha256="1mal9x2x882lq3cf74yjrdan3i69x2kq309b154n6lm4gbpk95vw"; depends=[ape corHMM data_table deSolve diversitree geiger GenSA igraph nloptr paleotree phangorn phytools plotrix subplex TreeSim]; }; histmdl = derive2 { name="histmdl"; version="0.7-1"; sha256="0k6l3pfjzlgpxv55vy8dg4sl8zhh0460xcfszwp2k9sbzanwaamp"; depends=[]; }; histogram = derive2 { name="histogram"; version="0.0-25"; sha256="0yymc7fw4qkbigr8jiw2nzjyrw0ikkipz62pdn3bpz1f7nb7mi93"; depends=[]; }; historicalborrow = derive2 { name="historicalborrow"; version="1.0.4"; sha256="0g7fs6qn957s3zw4ibbqszn2zpncpf6m41r68dw8g6x942mr0fhv"; depends=[dplyr ggplot2 Matrix posterior rjags rlang tibble tidyr tidyselect]; }; - historicalborrowlong = derive2 { name="historicalborrowlong"; version="0.0.7"; sha256="0ynf6sb850i01fwxj1pnha8q8n1qmmf7r0jkmz4azm5pblf12fg0"; depends=[BH clustermq dplyr ggplot2 MASS Matrix posterior Rcpp RcppEigen RcppParallel rlang rstan rstantools StanHeaders tibble tidyr tidyselect trialr withr zoo]; }; + historicalborrowlong = derive2 { name="historicalborrowlong"; version="0.0.8"; sha256="05kk4m80xvmlra9dlkcq2ww5llyg9r8bqhh8p7i8kzma6c31w4qa"; depends=[BH clustermq dplyr ggplot2 MASS Matrix posterior Rcpp RcppEigen RcppParallel rlang rstan rstantools StanHeaders tibble tidyr tidyselect trialr withr zoo]; }; historydata = derive2 { name="historydata"; version="0.1"; sha256="1h69x3iig542d43p9zm8x83p4dq48iwsw606j4fndnqhx99vzkw6"; depends=[]; }; - histoslider = derive2 { name="histoslider"; version="0.1"; sha256="1458bh7by00izx4q9idl479f08i3gk2g59mmzfvh945vbf399km0"; depends=[htmltools reactR rlang shiny]; }; + histoslider = derive2 { name="histoslider"; version="0.1.1"; sha256="1ssniz6lm5zwsqzplidsdjk92d3723kxxpvxb43hgydwbhlq7rd4"; depends=[htmltools reactR rlang shiny]; }; histry = derive2 { name="histry"; version="0.2.4"; sha256="01rdpzkfq7nyiq1gh0cm89dn3466cmhgfj9x19lhl2yvh8xsdz8x"; depends=[CodeDepends evaluate fastdigest roprov]; }; hitandrun = derive2 { name="hitandrun"; version="0.5-6"; sha256="0r0iymcmhiv3q1n7mrn3zsz2libfq3cdsq517k7kdk9m35piqrcg"; depends=[rcdd]; }; hivdata = derive2 { name="hivdata"; version="0.1.0"; sha256="1rscr91hgrbpgip0knv5wp7nv3bvzr4rrfg8fpch364g99sbbqrq"; depends=[]; }; @@ -11244,16 +11443,16 @@ in with self; { hmeasure = derive2 { name="hmeasure"; version="1.0-2"; sha256="0l4nlny532kddiaa1nmgd37971whhwzb54mb1pvbwax7fsg6hmhw"; depends=[]; }; hmer = derive2 { name="hmer"; version="1.5.6"; sha256="1rnav6vd67daf4v8x7038zvakx0hh7fgcmldsipknbkilm49vdh7"; depends=[cluster dplyr GGally ggbeeswarm ggplot2 isoband lhs MASS mvtnorm pdist purrr R6 rlang stringr tidyr viridis]; }; hmm_discnp = derive2 { name="hmm.discnp"; version="3.0-9"; sha256="1cwsgjf258hwyf12sn54iqiliikmadbknlvhclhmqrr2vvj7561f"; depends=[nnet]; }; - hmmTMB = derive2 { name="hmmTMB"; version="1.0.1"; sha256="0iy0n4hy33a4lj62xz953a80lg1pkghw32x0mk5bx8fb7z8hq4n8"; depends=[CircStats ggplot2 MASS Matrix mgcv optimx R6 RcppEigen stringr TMB tmbstan]; }; + hmmTMB = derive2 { name="hmmTMB"; version="1.0.2"; sha256="1vrjkq5vv70wjvg588w2q7sd8qhnp4iz3swx8yc3x8w7zpwkf0hn"; depends=[CircStats ggplot2 MASS Matrix mgcv optimx R6 RcppEigen stringr TMB tmbstan]; }; hmmm = derive2 { name="hmmm"; version="1.0-4"; sha256="1sbr85lcmcw3lv0ygqwfbarr91dp3br1xnlygy49145cvl93nfci"; depends=[MASS mvtnorm nleqslv quadprog]; }; hmmr = derive2 { name="hmmr"; version="1.0-0"; sha256="1m0jmw0i66hm5z5rycvpdmasq8zhgsz91km491n0n923mm480hmh"; depends=[depmixS4]; }; hms = derive2 { name="hms"; version="1.1.3"; sha256="10h2k5j97fggq3hc0qzxv1q9821y21m326v3x99zsvpl1b3g89p6"; depends=[lifecycle pkgconfig rlang vctrs]; }; - hmsr = derive2 { name="hmsr"; version="1.0.0"; sha256="171zfs27v0kznj28cbizq72i1fan5gz1s5r42kv90jylhxdv8mbc"; depends=[GA msm uuid]; }; + hmsr = derive2 { name="hmsr"; version="1.0.1"; sha256="0zznji4cxkgbww7cyxad68bxmqf18y76wkyw9y03d97871jr0sny"; depends=[GA msm uuid]; }; hmstimer = derive2 { name="hmstimer"; version="0.2.1"; sha256="178jnxhbpa5y2k2cw3w7czyapb23n6yygmymijvn3pzcgx607y3v"; depends=[hms]; }; hnp = derive2 { name="hnp"; version="1.2-6"; sha256="12cbc353ipr2rcc93skf1766g38j1pvpdkqk3cswv0cxsjl2x7pl"; depends=[MASS]; }; hoardeR = derive2 { name="hoardeR"; version="0.9.4-2"; sha256="1jdxfalmi4p7gwb7jndxbzbklv1fk0c57shnl4jz27s81lndg437"; depends=[bamsignals Biostrings data_table GenomicRanges GenomicTools_fileHandler httr IRanges KernSmooth knitr MASS R_utils RCurl rmarkdown Rsamtools S4Vectors seqinr stringr XML]; }; hoardr = derive2 { name="hoardr"; version="0.5.3"; sha256="0z34hgiwlgaljrfg0clmzx3fws1pdqq2hlg54awpvphz1qsx3r5r"; depends=[digest R6 rappdirs]; }; - hockeystick = derive2 { name="hockeystick"; version="0.8.2"; sha256="0h332wcrkxgz0c0brxqj0yz9r9k8qgk52i4vq9x5w858sdkwm19b"; depends=[dplyr ggplot2 jsonlite lubridate patchwork RColorBrewer readr rvest scales tibble tidyr treemapify]; }; + hockeystick = derive2 { name="hockeystick"; version="0.8.3"; sha256="1qli3293grlvih2i8120xsbkl6nfhdzs4ggzahbaqx5szdjinb95"; depends=[dplyr ggplot2 jsonlite lubridate patchwork RColorBrewer readr rvest scales tibble tidyr treemapify]; }; holdem = derive2 { name="holdem"; version="1.2"; sha256="0mcb4civ4p7apm7kfl88apvb4yznsmn4hggfggmjhs046g6bi2p7"; depends=[]; }; holiglm = derive2 { name="holiglm"; version="0.2.6"; sha256="0002md0kmai9nbsgab47bcfdf1cmr8kgp7qyqbqcny76l3zzjwhx"; depends=[checkmate MASS ROI ROI_plugin_ecos slam SuppDists]; }; holland = derive2 { name="holland"; version="0.1.2-1"; sha256="0f5nr17rmx1m3g4aw6c1f82xdj2ll5nr8slm8ha80cg2i6a90v10"; depends=[MplusAutomation mvtnorm]; }; @@ -11263,7 +11462,7 @@ in with self; { homnormal = derive2 { name="homnormal"; version="0.1"; sha256="1xw8j5b0w3ngqwzd458zcsmj6874dgxhrik1z3w7l188j5gr5vxa"; depends=[huxtable]; }; homologene = derive2 { name="homologene"; version="1.4.68.19.3.27"; sha256="0d7wxisk0vqk1n165v1i19bc02zv78h5r5d3jqai5y6nkmwn01sh"; depends=[dplyr magrittr purrr R_utils readr]; }; homomorpheR = derive2 { name="homomorpheR"; version="0.2-2"; sha256="1iahq16nswlc3b87598206xdp24bg9v8acyjp1jivybl3fr4k3pq"; depends=[gmp R6 sodium]; }; - hoopR = derive2 { name="hoopR"; version="1.8.0"; sha256="0rfz3gbsk7kq480bjanznxwqsgk228sj9apmwpb4cp49c4fgjhin"; depends=[cli data_table dplyr furrr future glue httr janitor jsonlite magrittr progressr purrr Rcpp RcppParallel rlang rvest stringr tidyr usethis]; }; + hoopR = derive2 { name="hoopR"; version="2.1.0"; sha256="1m6ffh7slcqzj28jn9f67n5czidal5nkv6c883sk96w13h3lhyam"; depends=[cli data_table dplyr furrr future glue httr janitor jsonlite lubridate magrittr progressr purrr Rcpp RcppParallel rlang rvest stringr tidyr usethis]; }; hopbyhop = derive2 { name="hopbyhop"; version="3.41"; sha256="1dh502mjrk9dlqikn0ak4gh2dw9nrnp3zrz8j1xwa9cjn37al2wh"; depends=[ggplot2 pastecs]; }; hopit = derive2 { name="hopit"; version="0.11.5"; sha256="0cvka7r66c8divszvjxd0p1r7xyn9r3qgsrvc3vmzj2f43wdjlhv"; depends=[MASS questionr Rcpp RcppEigen Rdpack survey]; }; hopkins = derive2 { name="hopkins"; version="1.1"; sha256="0wy4d5mmzd9qka5wpkglqy0m2pswypj64wp4hqpk94c6gj46ghwl"; depends=[donut pdist RANN]; }; @@ -11281,7 +11480,7 @@ in with self; { howler = derive2 { name="howler"; version="0.2.1"; sha256="00l1952hf2ngypg67y88rgn0xiicsjsyl6xf8r9r65ar9k0fl3yb"; depends=[htmlwidgets shiny]; }; howmany = derive2 { name="howmany"; version="0.3-1"; sha256="045ck8qahfg2swbgyf7dpl32ryq1m4sbalhr7m5qdgpm62vz8h7f"; depends=[]; }; howzatR = derive2 { name="howzatR"; version="1.0.1"; sha256="00mv9qkn4ndp74jwqkjwqmy7j8ywhpl4ycg81yw3xlabbnqb292j"; depends=[magrittr rlang]; }; - hpa = derive2 { name="hpa"; version="1.3.1"; sha256="18jjn02a34apd0iyq9h5ziqxqb0pcphprn9k8nnqyvjip8d6v3fz"; depends=[Rcpp RcppArmadillo RcppParallel]; }; + hpa = derive2 { name="hpa"; version="1.3.3"; sha256="1p3bi6syn211wp2xa90mcxsl11gk8w9rpn2axlxasnqc4c3ag64x"; depends=[Rcpp RcppArmadillo RcppParallel]; }; hpackedbubble = derive2 { name="hpackedbubble"; version="0.1.0"; sha256="1br7q4958f1zgvisglsaf41nz2ahnqi3bzazvlfnmk3nq03cb1ri"; depends=[htmlwidgets]; }; hpcwld = derive2 { name="hpcwld"; version="0.6-5"; sha256="1w7jpfnaqm9qhr52ixyihzwqklhf2pccshhpvf57pra3vc6cwv2l"; depends=[]; }; hpfilter = derive2 { name="hpfilter"; version="1.0.2"; sha256="1w1asqa4dszijwdmgdzx4ahl5bl34l0psczwvcal4kdkawy5kia2"; depends=[Matrix]; }; @@ -11301,20 +11500,19 @@ in with self; { hspm = derive2 { name="hspm"; version="1.1"; sha256="0ycdaji080xav2k87pcln7c26iy31bfjxzzccpyl57w3agcfwrcc"; depends=[Formula Matrix spdep sphet]; }; hsrecombi = derive2 { name="hsrecombi"; version="1.0.1"; sha256="1f5ks1wvpc0dn5lwyhs479zhkcbcfg2c5gxxlwr9pliv5ncgcmla"; depends=[curl data_table dplyr hsphase Matrix quadprog Rcpp rlist]; }; hsstan = derive2 { name="hsstan"; version="0.8.1"; sha256="0k7sqwx73zid68ji9l2hfihqdlk3rdpid81pp8g3fmi8dpvrzkms"; depends=[BH ggplot2 loo pROC Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; - hstats = derive2 { name="hstats"; version="1.0.0"; sha256="1izl6jab013849rm4276p04vy4b2lngs1a5lg4q3vvdhf8wmkscv"; depends=[ggplot2]; }; - htdp = derive2 { name="htdp"; version="0.1.4"; sha256="0w579qp0p544xryb5r08m1nhqf7rmgv9q0lyx6my4av62l70ka5w"; depends=[Rcpp]; }; + hstats = derive2 { name="hstats"; version="1.1.1"; sha256="08r9gdgw1z3w9gl0wrzdvw0kxr1slwi03mb9p4mrvvr6gd70w71f"; depends=[ggplot2]; }; htestClust = derive2 { name="htestClust"; version="0.2.2"; sha256="081kxhc7sn070ys94pfzjf3gi2kkqwrqx2sclbgz4ihahqkbnhhr"; depends=[bootstrap MASS]; }; - htetree = derive2 { name="htetree"; version="0.1.17"; sha256="0z7gbpzvj4w5vz8b3zs4mvr70qf8sz295cbypm5x6np0ac2gcdzm"; depends=[data_tree dplyr grf jsonlite Matching partykit Rcpp rpart rpart_plot shiny stringr]; }; + htetree = derive2 { name="htetree"; version="0.1.18"; sha256="144jn5b79xqr4h190c06wwpa5679125xa9qmnaxqh371h45263gd"; depends=[data_tree dplyr grf jsonlite Matching partykit Rcpp rpart rpart_plot shiny stringr]; }; htm2txt = derive2 { name="htm2txt"; version="2.2.2"; sha256="0f03vckq4wzd2nbzjfqgjf2pnjfdq875lhpim10k80smq32w8xx0"; depends=[]; }; html2R = derive2 { name="html2R"; version="0.1.0"; sha256="1zdnwbqlpjh8r2xcl83da9pzh9cb8h908krnrs61vqhka7zb82ng"; depends=[glue shiny shinyAce shinyjqui shinythemes]; }; html5 = derive2 { name="html5"; version="1.0.2"; sha256="1icji4y2x7bn4nrsf99n8b6g5v053bb9hpwvmp8bf5wh63d1ns8l"; depends=[]; }; - htmlTable = derive2 { name="htmlTable"; version="2.4.1"; sha256="14qg65nw0bpikqs1hb1x7apzdzrnnl3ykjnks67kkp46v1skwzrs"; depends=[checkmate htmltools htmlwidgets knitr magrittr rstudioapi stringr]; }; + htmlTable = derive2 { name="htmlTable"; version="2.4.2"; sha256="039nnxnvw5l284n7w8q0hnplm0b58nwhsrpjfi5asg61f9hxv0va"; depends=[checkmate htmltools htmlwidgets knitr magrittr rstudioapi stringr]; }; htmldf = derive2 { name="htmldf"; version="0.6.0"; sha256="19brwxqnsxzvgsqq3gsjkcyag9ag3xa3mrl5c4s7x48xx2knfh9q"; depends=[cld3 dplyr httr lubridate magrittr processx progress R_utils ranger rvest stringr tibble tidyr urltools xml2]; }; - htmltools = derive2 { name="htmltools"; version="0.5.6.1"; sha256="0km08kvg0j2h1d0v6wpxf09yjadhp2srjjnmqwcahfyh37w4xf09"; depends=[base64enc digest ellipsis fastmap rlang]; }; - htmlwidgets = derive2 { name="htmlwidgets"; version="1.6.2"; sha256="1g0h5dqzr22jyxr6fkxyf8njq3f4wxp7nrwhqw1w5yy0lir1dnkz"; depends=[htmltools jsonlite knitr rmarkdown yaml]; }; + htmltools = derive2 { name="htmltools"; version="0.5.7"; sha256="11mkk26pjck6r2w2nv6niy90c6l13g64zi01s3j4jgq634kdic7c"; depends=[base64enc digest ellipsis fastmap rlang]; }; + htmlwidgets = derive2 { name="htmlwidgets"; version="1.6.4"; sha256="1l0f7bz2icixsrgg5fg8k09mv0nq9vn5ch1fywkaqpa8605qzc3w"; depends=[htmltools jsonlite knitr rmarkdown yaml]; }; hts = derive2 { name="hts"; version="6.0.2"; sha256="06mmxdm7a2fb1r4mb2x12b00rnkaxlrmlkv5yizr3yixmn4is9wb"; depends=[forecast Matrix Rcpp RcppEigen SparseM]; }; htsr = derive2 { name="htsr"; version="2.1.2"; sha256="1pd9s54rxmgihxrrhbdz99rkpqq8hbswc96wy6kdzk400bmxrl36"; depends=[DBI dplyr fs ggplot2 lubridate purrr Rcpp readr readxl RSQLite shiny shinyFiles stringr tibble waiter WriteXLS]; }; - httk = derive2 { name="httk"; version="2.2.2"; sha256="1ziwlb4nigf0hk3ngmk309m0gmaylvmd00m553sh0qrm9k2dls9q"; depends=[data_table deSolve magrittr msm mvtnorm purrr Rdpack survey truncnorm]; }; + httk = derive2 { name="httk"; version="2.3.0"; sha256="1vlv7c1zair8y02y39hmqnnwmmvwb96qcvrhb2bwasi68i15sqm5"; depends=[data_table deSolve ggplot2 magrittr msm mvtnorm purrr Rdpack survey truncnorm]; }; httpRequest = derive2 { name="httpRequest"; version="0.0.11"; sha256="0qsi01fcrkps0h6r7l3l5ph3zlq9gscmq19b9ah2q2qlcv3hk4cf"; depends=[]; }; httpcache = derive2 { name="httpcache"; version="1.2.0"; sha256="026sl19301al3sid9hlwq8jz5b0zvh9a4n3cl4niqvc2b57h133r"; depends=[digest httr]; }; httpcode = derive2 { name="httpcode"; version="0.3.0"; sha256="0xig0rvc81hg7mw0iq9s0an1nw24fg0kfs2p2n6dzhwl9w506fjr"; depends=[]; }; @@ -11322,15 +11520,15 @@ in with self; { httping = derive2 { name="httping"; version="0.2.0"; sha256="0hdcf51yak8yagy4xj9cyck934lgmvpkd08jvlql33ir5mqvvv3i"; depends=[httpcode httr jsonlite magrittr pryr]; }; httpproblems = derive2 { name="httpproblems"; version="1.0.1"; sha256="0zd683xd9f9hz6dxm4bmic54jqjcabr23kwl6afsmdjwnrwwsn06"; depends=[]; }; httptest = derive2 { name="httptest"; version="4.2.1"; sha256="1d97n6h15vad7z96w37b9dl0q7n4j9yksn32vxnx26iik8q2jic3"; depends=[curl digest httr jsonlite testthat]; }; - httptest2 = derive2 { name="httptest2"; version="0.1.0"; sha256="18i4lzqkmhd500rjfkh24drcqvw8ric3disddcl7bm3rddwn4bvh"; depends=[digest httr2 jsonlite rlang testthat]; }; - httpuv = derive2 { name="httpuv"; version="1.6.12"; sha256="0x2y5yjj1ha99dv5c8j6pxm8fqhdcx010jl4rcw2qw20qaqp5ndi"; depends=[later promises R6 Rcpp]; }; + httptest2 = derive2 { name="httptest2"; version="1.0.0"; sha256="0qgkw93a1cv1n81jvwp8i64snaac84rbr76mg8c5b4a2f4fhysi1"; depends=[digest httr2 jsonlite rlang testthat]; }; + httpuv = derive2 { name="httpuv"; version="1.6.13"; sha256="0prvd2mv4rliqm0ldaldd6yjxy04qvxnqyhfxlk2c1lanmxzjvnb"; depends=[later promises R6 Rcpp]; }; httr = derive2 { name="httr"; version="1.4.7"; sha256="0fisvq3zydmqagn7lj6x98zxkcl7l95gfydl27zkigb7zg1fcm8m"; depends=[curl jsonlite mime openssl R6]; }; - httr2 = derive2 { name="httr2"; version="0.2.3"; sha256="0gabjyv2699p7fb4225jsr2kkbarx1w01kha8ipqzwhjjl13481m"; depends=[cli curl glue magrittr openssl R6 rappdirs rlang withr]; }; + httr2 = derive2 { name="httr2"; version="1.0.0"; sha256="0jaajfr1hr6bzb1vz2nw2csl2l09kbq619vsq5yrlchcarpjv1fb"; depends=[cli curl glue lifecycle magrittr openssl R6 rappdirs rlang vctrs withr]; }; hubeau = derive2 { name="hubeau"; version="0.4.1"; sha256="0qvvd1a4plmhm6784xda75pn6751hjabr2x6i2h5y8hh85zidldy"; depends=[dplyr httr magrittr purrr tibble urltools]; }; hudr = derive2 { name="hudr"; version="1.2.0"; sha256="1kvqbgyhyr4lvzqvfsa1597px8ydqpacphnm902hchqv5qvbxgm4"; depends=[data_table httr janitor magrittr]; }; hues = derive2 { name="hues"; version="0.2.0"; sha256="062i7yc16nmnp15c1jh4xffw2lpklp36wkn1yvagh186ahnlgffx"; depends=[colorspace]; }; huge = derive2 { name="huge"; version="1.3.5"; sha256="1sl457a1lndrx98y2j9a2smanawx2iqlhl82iand0g3p5xp8ch4j"; depends=[igraph MASS Matrix Rcpp RcppEigen]; }; - huito = derive2 { name="huito"; version="0.2.3"; sha256="1abq0jpihim04rmk4v5i24407ll1hjgmb6pwxjlz886bzbhrwhzq"; depends=[cowplot dplyr ggplot2 magick pdftools purrr qrcode showtext sysfonts tibble tidyr]; }; + huito = derive2 { name="huito"; version="0.2.4"; sha256="0i7wxgddgdk72r6a2zmfi8b84ism0551f9n0hz8jx6aj21wqkx4r"; depends=[cowplot dplyr ggplot2 magick pdftools purrr qrcode showtext sysfonts tibble tidyr]; }; humanFormat = derive2 { name="humanFormat"; version="1.2"; sha256="0yzax988qp5c8kvjnj9ggm5yl9sklqhs7b2b4w81np5kxhxy973y"; depends=[testthat]; }; humaniformat = derive2 { name="humaniformat"; version="0.6.0"; sha256="0vaynjzz57pk4y1liag9lpn9jkag2033a6bkn28zzm7ndg3344l6"; depends=[Rcpp]; }; humanize = derive2 { name="humanize"; version="0.2.0"; sha256="0hhhd640n77s8xaa2gbd9fckdk2yjg68gdb7wjy56a2khzqfssxr"; depends=[assertthat glue lubridate]; }; @@ -11340,8 +11538,8 @@ in with self; { hurdlr = derive2 { name="hurdlr"; version="0.1"; sha256="1ryrqsxa07isxv2zx156bcn36d4yjvwpirb8jqcmqm97q7rmihmq"; depends=[]; }; hurricaneexposure = derive2 { name="hurricaneexposure"; version="0.1.1"; sha256="0a8xy71dkq2bzdnc90irxmbcxhi0anh87ic22x7b22c3m5605w6s"; depends=[data_table dplyr ggmap ggplot2 lazyeval lubridate mapproj maps purrr RColorBrewer rlang stringr tidyr]; }; hutils = derive2 { name="hutils"; version="1.8.1"; sha256="0pdya5gdyab5pwpgiw9yfa95m5ynqk154sydsfg56dxq1ihzfr74"; depends=[data_table fastmatch magrittr]; }; - hutilscpp = derive2 { name="hutilscpp"; version="0.10.2"; sha256="1hh42cady784ld6d7m9axvh4lwlpb6ffpyvc8shfa7dkfhz703ra"; depends=[data_table hutils magrittr]; }; - huxtable = derive2 { name="huxtable"; version="5.5.2"; sha256="1rpyqkdck6cmh2a7f5j71ypk2v9gzl3jf2b0z9jjlfrv1d1b8x7l"; depends=[assertthat commonmark fansi generics glue htmltools memoise R6 rlang stringi stringr tidyselect xml2]; }; + hutilscpp = derive2 { name="hutilscpp"; version="0.10.4"; sha256="0gjj2808dc4c1s28d94sc1iwb88n61lsplqvhlhn2yab3qa0ljf9"; depends=[data_table hutils magrittr]; }; + huxtable = derive2 { name="huxtable"; version="5.5.3"; sha256="14ib3rbzkgv100d0p7s6688wyqg8dyn4z647m37n0nf4ncpszpji"; depends=[assertthat commonmark fansi generics glue htmltools memoise R6 rlang stringi stringr tidyselect xml2]; }; hwde = derive2 { name="hwde"; version="0.67-3"; sha256="0kj3vf4pmcvxy95hx1d0q6c626y8d0ljj3r76y5hd90a6v75b5xa"; depends=[]; }; hwep = derive2 { name="hwep"; version="2.0.2"; sha256="0cvy9s9kwc1jp4klgbjahidpk8gkvfa43vry8i0y77nvfys7x9v9"; depends=[BH bridgesampling doFuture doRNG foreach future iterators pracma Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders tensr updog]; }; hwig = derive2 { name="hwig"; version="0.0.2"; sha256="06a42a38qsjwijbbr2c8dsd7hjm751g1s4sgcmzvvfi6xy7svl3k"; depends=[asnipe data_table spatsoc]; }; @@ -11353,19 +11551,19 @@ in with self; { hybridModels = derive2 { name="hybridModels"; version="0.3.7"; sha256="0fj3dvv7s1hlicvlb077pkhbj894brzgdxhp67jck9zpy2qymzxq"; depends=[doParallel doRNG foreach ggplot2 GillespieSSA reshape2 stringr]; }; hybridogram = derive2 { name="hybridogram"; version="0.3.2"; sha256="14p2gwmgcaf84aycdc2a51frw2pccrffsjk8n83gvj2ans8phrr9"; depends=[pheatmap]; }; hybridts = derive2 { name="hybridts"; version="0.1.0"; sha256="1x96g0cjgn3vklczksxdgpd5ayl3rl63k0ig0h8vacm2nxn4c6js"; depends=[forecast Metrics nnfor WaveletArima]; }; - hydflood = derive2 { name="hydflood"; version="0.5.6"; sha256="1g74gxarn3f8q0pnwwz802jrryry0w72py7agckaqwzwybfsklsc"; depends=[raster Rdpack sf terra]; }; + hyd1d = derive2 { name="hyd1d"; version="0.5.1"; sha256="0ixklk8g3d5bayv4jwprknb1f7pzhxqd60lk8v5j1i6zcpjad0mw"; depends=[curl httr2 Rdpack]; }; + hydflood = derive2 { name="hydflood"; version="0.5.7"; sha256="18gw2jipssaid5q004gyvfk56vgvajv69kd0f6zh2fp7sgq5w33d"; depends=[hyd1d raster Rdpack sf terra]; }; hydra = derive2 { name="hydra"; version="0.1.0"; sha256="0r3r8cds4h15narawxhzkrvgnf00vlgrgqdgnmbzjyyb1dmry8wn"; depends=[]; }; hydraulics = derive2 { name="hydraulics"; version="0.6.1"; sha256="1yk1s9fnphzmkpx9pfawm72i07kdj099q6i6cry9p08bzvac80xk"; depends=[ggplot2 gtools purrr reshape2 tibble units]; }; hydroEvents = derive2 { name="hydroEvents"; version="0.11"; sha256="1w433lmzk6lr2lnqn1qcq13c980kpi0r881cdzm56n53s89zdh36"; depends=[]; }; hydroToolkit = derive2 { name="hydroToolkit"; version="0.1.0"; sha256="0bij4365hczvq17wj9hp0570v35m8ili11mp9dzfj3mvhhqrc9p4"; depends=[ggplot2 lubridate plotly readxl reshape2]; }; hydrogeo = derive2 { name="hydrogeo"; version="0.6-1"; sha256="16m6yvr9yhvb0vdh9pqd6gzf3h9km7gd89y6risjddv6g83469k8"; depends=[]; }; - hydroloom = derive2 { name="hydroloom"; version="1.0.0"; sha256="0yl1npcb52i64kihxl8nwsapkr80ix7wsxn1c66bbzmd3hwb2n34"; depends=[data_table dplyr fastmap pbapply RANN rlang sf tidyr units]; }; + hydroloom = derive2 { name="hydroloom"; version="1.0.1"; sha256="0ygplrn9frjb7rs4yrlq2xrmpqx3ikp28fv7fy1sfh3kcfxihbmk"; depends=[data_table dplyr fastmap pbapply RANN rlang sf tidyr units]; }; hydropeak = derive2 { name="hydropeak"; version="0.1.2"; sha256="06x1qahavvhaqwdsjg65ixgc6migbm188v3w3vjng5xl2g2ybhqc"; depends=[]; }; hydroroute = derive2 { name="hydroroute"; version="0.1.2"; sha256="1pvdvfmjrxplcycszaig2xbwlk1acs6smci1cwmmhdh2xpaffami"; depends=[dplyr ggplot2 ggpmisc gridExtra hydropeak lubridate reshape2 scales]; }; hydrostats = derive2 { name="hydrostats"; version="0.2.9"; sha256="11ipfp5dnl336wbsw0nrrcd68hccp8igvlrr93rc3hrvif3slkim"; depends=[]; }; hydrotoolbox = derive2 { name="hydrotoolbox"; version="1.1.2"; sha256="0m5crm8n8i3fv43am649cdyrbfcfbais8fwrg6c7zy81dbhmy9m9"; depends=[ggplot2 lubridate magrittr plotly Rcpp readxl reshape2 tibble zoo]; }; hyfo = derive2 { name="hyfo"; version="1.4.6"; sha256="03z36ddq6vpld1v876adp5xrz0hjy46vhs5sn8sgaa57fhmya6cm"; depends=[data_table ggplot2 lmom maps MASS moments ncdf4 plyr reshape2 sf sp zoo]; }; - hyper_fit = derive2 { name="hyper.fit"; version="1.1.1"; sha256="1xibiydfkhzsw0yqfc0xfzj4yz8xyxqlvnfpyxg33v5fwp9wap3v"; depends=[LaplacesDemon magicaxis MASS rgl]; }; hyper2 = derive2 { name="hyper2"; version="3.0-0"; sha256="09nq5vxih9f7731nrd5avpk6gw4wbh9rpq4bmq7373ikgc3qy3mf"; depends=[alabama calibrator cubature disordR magrittr mathjaxr partitions Rcpp Rdpack]; }; hyperSpec = derive2 { name="hyperSpec"; version="0.100.0"; sha256="0m0ws6lm5q1555n0qhixj4fqq4bbcf7i7d73pg85z74a3058gk5s"; depends=[dplyr ggplot2 lattice latticeExtra lazyeval testthat xml2]; }; hypercube = derive2 { name="hypercube"; version="0.2.1"; sha256="0m0n64rl5fnhvhfdknrza8a0h5lw8vbgakaqbyfx77ixhwqhjn1l"; depends=[dplyr plotly stringr]; }; @@ -11377,18 +11575,18 @@ in with self; { hypoRF = derive2 { name="hypoRF"; version="1.0.0"; sha256="1yyq1pjxm9p395wq4zfimvcagspl8vlk0kzpa92pr084q5f7jcyr"; depends=[ranger]; }; hypothesis = derive2 { name="hypothesis"; version="1.1.0"; sha256="0mllh8lamls0rrbr9d12xa7a56pa2zahvr243kbfmhad81nalpl7"; depends=[glue htmltools htmlwidgets httr jsonlite magrittr purrr rlang]; }; hypothesisr = derive2 { name="hypothesisr"; version="0.1.1"; sha256="0z06risagphhvqiw4lrxy52q6q2yr10w2yxsm8iz1wh9ik097pcv"; depends=[dplyr httr jsonlite]; }; - hypr = derive2 { name="hypr"; version="0.2.7"; sha256="1fqy8qcl1sq770a1m7aw5s46bvf41gm46iwm8cg01yc3lf9849hm"; depends=[cli magrittr MASS Matrix pracma]; }; + hypr = derive2 { name="hypr"; version="0.2.8"; sha256="1l5vfjifnnf711wr3n9zprf78jkq7s2pjvw3vz47jr3234glsrjx"; depends=[cli magrittr MASS Matrix pracma]; }; hypsoLoop = derive2 { name="hypsoLoop"; version="0.2.0"; sha256="0kwxzw2r406li2pmby92a3jik4k3z1vdgs54m4q45a8r8vz3y1nn"; depends=[dplyr ggplot2 PolynomF sf sjPlot stars terra]; }; hystReet = derive2 { name="hystReet"; version="0.0.3"; sha256="1vrby9lgy0nm5wa5r1y3k3l2s9fc8vdf4szy8isvnzayr464xvwi"; depends=[httr jsonlite lubridate]; }; hystar = derive2 { name="hystar"; version="1.0.0"; sha256="1gyk78nfhhglry2dwy21h9s2hqlqisd7cffwg2864spmwml4brcf"; depends=[Rcpp]; }; hysteresis = derive2 { name="hysteresis"; version="2.7"; sha256="1nnfr50nafhimj2j5xpxly3i8xvkwwddz864gklwm9jzdpmv02yh"; depends=[car MASS msm]; }; i18n = derive2 { name="i18n"; version="0.2.0"; sha256="1ksvrrpymflfbr7acnv3sh4xa0xqjp44ngdpkp500p50mwpww1wr"; depends=[magrittr]; }; - i2dash = derive2 { name="i2dash"; version="0.2.4"; sha256="0silwp4pasry7z1yjhzyw06xpa8021v9bkhinc73i7dzr720ld5v"; depends=[assertive_sets assertive_types flexdashboard glue htmltools knitr magrittr rmarkdown stringi stringr xfun ymlthis]; }; i2extras = derive2 { name="i2extras"; version="0.2.1"; sha256="14k9s5ppq3c7ldh6gqi82awmkk34ac0br0qr42gqba9lrssf4bsr"; depends=[ciTools data_table dplyr ggplot2 incidence2 MASS rlang tibble tidyr tidyselect vctrs]; }; iAR = derive2 { name="iAR"; version="1.2.0"; sha256="0svxn81a0yq3m51594zrpy99i8p9zcfjzbxsi19yyfcm6iymzv24"; depends=[ggplot2 Rcpp RcppArmadillo Rdpack]; }; iAdapt = derive2 { name="iAdapt"; version="2.0.1"; sha256="050kzacvf19m8s89layqqf0l85db1k4cd3akb16jrv9wjfi9k61v"; depends=[Matrix shiny shinydashboard]; }; + iBART = derive2 { name="iBART"; version="1.0.0"; sha256="05vwwdlm78s7qa5lv717yvw48alk7k8wapcs9b1rcrhpam0kr1y3"; depends=[bartMachine foreach glmnet]; }; iBST = derive2 { name="iBST"; version="1.2"; sha256="0z7v679s5w270dfls61hh4fab9pzzj4lsqwsx06r59s0hlsrv5nw"; depends=[Rcpp rpart survival]; }; - iBreakDown = derive2 { name="iBreakDown"; version="2.0.1"; sha256="00jzrndb3ahsv6ihp2pvs732n9cc944m83vdinrl9v1pxd82prkh"; depends=[ggplot2]; }; + iBreakDown = derive2 { name="iBreakDown"; version="2.1.2"; sha256="1qacvfzknchfm27mhl7a357fnb6lzjkj4vh8lch5aljz82sdmdaf"; depends=[ggplot2]; }; iC10 = derive2 { name="iC10"; version="1.5"; sha256="1xq6xv582wxdb0nc2nia3q38155gx8z26idiqyx7h1rjb20hhwdl"; depends=[iC10TrainingData impute pamr]; }; iC10TrainingData = derive2 { name="iC10TrainingData"; version="1.3.1"; sha256="175ymib3h359296hk36psryksisipx63ybvacz8hys21irzx58j1"; depends=[]; }; iCAMP = derive2 { name="iCAMP"; version="1.5.12"; sha256="0rx0mjkmlqf5awq387h1bzampvkwp67jbkjz29qmw85ma6vlqbpi"; depends=[ape bigmemory data_table DirichletReg Hmisc minpack_lm nortest permute vegan]; }; @@ -11396,11 +11594,11 @@ in with self; { iCellR = derive2 { name="iCellR"; version="1.6.5"; sha256="0jdm61mbjl0m4d9p6yc4b1pvbdzlk5qgably1y5ck8r9sk426vdn"; depends=[ape data_table ggdendro ggplot2 ggpubr ggrepel gridExtra hdf5r Hmisc htmlwidgets igraph jsonlite knitr Matrix NbClust pheatmap plotly plyr png progress RANN RColorBrewer Rcpp reshape Rtsne scatterplot3d shiny uwot]; }; iClick = derive2 { name="iClick"; version="1.5"; sha256="0yq0r9nz1mf9ci6l30ylqxbgl8mf1ahyqzr7m6nks0ygxabipdnd"; depends=[boot car coefplot fBasics forecast lattice lmtest lubridate openair papeR rugarch sandwich timeDate timeSeries xts zoo]; }; iDINGO = derive2 { name="iDINGO"; version="1.0.4"; sha256="00x9q73y2a1bxnbqv18sjp7nrbj1bk56rzhmllpnllwy8k9dw31j"; depends=[GGMridge glasso igraph mvtnorm scales visNetwork]; }; - iDOVE = derive2 { name="iDOVE"; version="1.4"; sha256="1ks83ha183mmda9pqhvaa9636gwjlkyr6hrdnhfjv75fks54476f"; depends=[Rcpp RcppArmadillo]; }; + iDOVE = derive2 { name="iDOVE"; version="1.5"; sha256="14issa46k141hbp8sayzgiskazknkgwjsw16c94w1pwcm69nq1i8"; depends=[Rcpp RcppArmadillo]; }; iForecast = derive2 { name="iForecast"; version="1.0.7"; sha256="03g15xps3bymx2jj6j02pr1llk3lcb5lc3s5r0i2c86qc92lprch"; depends=[caret magrittr]; }; iGSEA = derive2 { name="iGSEA"; version="1.2"; sha256="1xlz8mbxqnrwyqj7jwma7vmvjlaccajbfxf3hi4wp5qs2pch8806"; depends=[]; }; iGasso = derive2 { name="iGasso"; version="1.6"; sha256="066g27lv9i4yc6ksz2y14q8xn4k547mfvjwpjjzxm35mjywxbsqg"; depends=[CompQuadForm lattice MASS MBESS]; }; - iGraphMatch = derive2 { name="iGraphMatch"; version="2.0.2"; sha256="13rc8bi2p8gh238jxyqphah89dlpvmjwialzaha3ikdnmfgr41f4"; depends=[clue igraph irlba Matrix Rcpp]; }; + iGraphMatch = derive2 { name="iGraphMatch"; version="2.0.3"; sha256="1fp3x8xikc1992jgba5d5snjzgsczp5iy87m9qinbv7f9a94sfnq"; depends=[clue igraph irlba Matrix Rcpp]; }; iIneq = derive2 { name="iIneq"; version="1.0.2"; sha256="15487majkslabw33dgqfx0jmbzzjhiy8z07bki5540d1wf6rmmnn"; depends=[doParallel foreach]; }; iMRMC = derive2 { name="iMRMC"; version="1.2.5"; sha256="0a99arybhv5awlkrmzyv6m4cbdszw77qjw90ywwbddkccq1fq2h2"; depends=[]; }; iMediate = derive2 { name="iMediate"; version="0.5.5"; sha256="1lwhrzm4g2fcazh782g7p11v5pyx165ig1dzgkmdmjffpwk0w8b4"; depends=[MBESS mvtnorm plotly]; }; @@ -11415,7 +11613,7 @@ in with self; { iRepro = derive2 { name="iRepro"; version="1.2"; sha256="0752bxa4gb875236cjifr6zgkxv18304781qrjl1sf7r7rzmb1cl"; depends=[]; }; iRoCoDe = derive2 { name="iRoCoDe"; version="1.0.1"; sha256="1m2cin8yxpirdnkw6v1lb4w04939dy9qwkaw5w2k8rqjsflr17ay"; depends=[]; }; iSFun = derive2 { name="iSFun"; version="1.1.0"; sha256="14m9wzvs4knq80kvrdqck9f0pyk7hricdclz0f8z9nq85djl4vim"; depends=[caret irlba]; }; - iSTATS = derive2 { name="iSTATS"; version="1.6"; sha256="0fdicyycwh1d1yzrf9241d3cf03vzqyhchwsy191hiwa5fa6bm7w"; depends=[Cairo data_table ggplot2 gtools plotly readr rstudioapi shiny shinyBS shinyWidgets]; }; + iSTATS = derive2 { name="iSTATS"; version="1.7"; sha256="1iay9ncydkhbvpsjla7nqiy74n5lg8w647djp2sfap8jspkdr0gg"; depends=[Cairo data_table ggplot2 gtools plotly readr rstudioapi shiny shinyBS shinyWidgets]; }; iSubGen = derive2 { name="iSubGen"; version="1.0.1"; sha256="0kfrgh4399x71mwa5j36nfszd65ybp61fwpc7qj3j9ypmgidwbaj"; depends=[cluster ConsensusClusterPlus keras philentropy tensorflow]; }; iTOP = derive2 { name="iTOP"; version="1.0.2"; sha256="1n6nlmmx2h63nksycgzr7qsnd1j6bxa629av7cfd3ihriim7dj47"; depends=[corpcor Matrix]; }; iTensor = derive2 { name="iTensor"; version="1.0.2"; sha256="09js2kiw1prrkn03srz4xas37mwbx85zkawfb93wgl292r31j2x9"; depends=[einsum geigen groupICA jointDiag MASS mgcv mixOmics rTensor]; }; @@ -11436,8 +11634,8 @@ in with self; { ibm = derive2 { name="ibm"; version="0.1.0"; sha256="0g6wg2qpa4q142xw2vq5pca4ll6pb8hyll5g0c93kk8crddk51s7"; depends=[Rcpp]; }; ibmAcousticR = derive2 { name="ibmAcousticR"; version="0.2.1"; sha256="1hrd2273n9fgi3hgjissjn4syw914mxm4wr98ij819yahsi9aj42"; depends=[httr jsonlite XML]; }; ibmcraftr = derive2 { name="ibmcraftr"; version="1.0.0"; sha256="0zm5j0a1wjj5agibp38h73qxpq0njvrhfq3077xhhfizcb3v24sb"; depends=[Rcpp]; }; - ibmdbR = derive2 { name="ibmdbR"; version="1.50.0"; sha256="151gg05gcy5wpyvyflr4mc0jq1npxzq9pc4spjc81x2igd14c370"; depends=[arules ggplot2 MASS Matrix RODBC rpart rpart_plot]; }; - ibmsunburst = derive2 { name="ibmsunburst"; version="0.1.2"; sha256="165fgz5fhfzn2cyr2y6caf980a5r50g2p6qrj0ssxyzlqspipjhn"; depends=[htmlwidgets jsonlite]; }; + ibmdbR = derive2 { name="ibmdbR"; version="1.51.0"; sha256="13wlidv15dn1adx59zx30jnqc9wxl8c2xp1nh3g3dcafsfin9lvj"; depends=[arules MASS Matrix RODBC rpart rpart_plot]; }; + ibmsunburst = derive2 { name="ibmsunburst"; version="0.1.3"; sha256="09gdd72nvmwv65gfblv038wgfslapkkwrj5m72bjahipf3acgg51"; depends=[htmlwidgets jsonlite]; }; ibr = derive2 { name="ibr"; version="2.0-4"; sha256="1vac4484n9jsn6m5pbdpw6zjjjgnas24176hs6mr51y2bjgywdkp"; depends=[mgcv]; }; ibs = derive2 { name="ibs"; version="1.4"; sha256="06zyg6c083437nhilqfhcf6yzlvazkpxhi3dh5d3dqv2zhxixlz4"; depends=[Rcpp]; }; ic_infer = derive2 { name="ic.infer"; version="1.1-7"; sha256="0gr17nsv0kbw5278p4wccyvaiyj5dwndx3m5919apfdkivk2jlq5"; depends=[boot kappalab mvtnorm quadprog]; }; @@ -11447,7 +11645,7 @@ in with self; { icardaFIGSr = derive2 { name="icardaFIGSr"; version="1.0.2"; sha256="1yysqkyr36388i8za8jhz0m1vdn3jv8kpb24pnhbxlwsq8r5x0jr"; depends=[caret doParallel dplyr foreach ggplot2 httr leaflet magrittr plotROC plyr raster reshape2 sp]; }; icarus = derive2 { name="icarus"; version="0.3.2"; sha256="0nk4z1xw8ca7nkxvkbrblpp42b1pim3dskj9sczpdva0s8ksnq43"; depends=[]; }; iccCounts = derive2 { name="iccCounts"; version="1.1.1"; sha256="0h1bjnyl24i2y8z1pys4k89q2dy5cfd808bc7w54j1vyyap0k899"; depends=[Deriv dplyr ggplot2 glmmTMB gridExtra VGAM]; }; - iccTraj = derive2 { name="iccTraj"; version="1.0.3"; sha256="0c6ia3h7a16d8qsrkgrs2sy8xslc4qib6gq636ckbjxlja3pzln7"; depends=[doParallel dplyr foreach magic purrr sp spacetime trajectories]; }; + iccTraj = derive2 { name="iccTraj"; version="1.0.4"; sha256="0chac68jsxnmy0whm7ajnlv68xdplwzy5xa7pdybyp3zlxyj35ss"; depends=[doParallel dplyr foreach magic purrr sp spacetime trajectories]; }; iccbeta = derive2 { name="iccbeta"; version="1.2.0"; sha256="03ms1c8qpbgxabj3hh4n0gwcazw6cd0cvixck5rz8fkvj04xzjak"; depends=[lme4 Rcpp RcppArmadillo]; }; iccde = derive2 { name="iccde"; version="0.3.5"; sha256="1z7ra8s0sddjmbfb8flgp4kmz1ckgwshz8h2nnpbd3liav84b5xv"; depends=[]; }; icd_data = derive2 { name="icd.data"; version="1.0"; sha256="0cynr9327wfg88661w4hali48mb6ghyvlqgybsa38k9bbf57v8aa"; depends=[]; }; @@ -11455,6 +11653,7 @@ in with self; { icdpicr = derive2 { name="icdpicr"; version="1.0.1"; sha256="099ipcpz1cff7cr572lww34az4wwym8phpbk2ph0545k2fk0c56d"; depends=[stringr]; }; icecream = derive2 { name="icecream"; version="0.2.1"; sha256="0pd78w28x1q1faxarsb0wm9jcqvjfpahm62d4wdywv8vh57crh5w"; depends=[cli glue pillar purrr rlang]; }; icenReg = derive2 { name="icenReg"; version="2.0.15"; sha256="1cjlvj4i5bir5769a22w8bb9477h04d8rpxk9ks72jp6zjjkq5qa"; depends=[coda foreach MLEcens Rcpp RcppEigen survival]; }; + icensBKL = derive2 { name="icensBKL"; version="1.5"; sha256="1jfms9dih8r5zw9cw32qnvv5ffzqhzm9q6pvwn0nk95531xvbp0a"; depends=[gtools Icens MASS mvtnorm smoothSurv survival TeachingDemos]; }; icensmis = derive2 { name="icensmis"; version="1.5.0"; sha256="1afpn07a25j2jh89r78bvarg2kr0sk3ap8gdmvk75lc6g3dhvri9"; depends=[Rcpp]; }; icertool = derive2 { name="icertool"; version="0.0.3"; sha256="0wwkqcvjmv2z8a8j597c2fjjcka1jz932i94rmqxcy31brvbi2nl"; depends=[digest DT ggplot2 ggrepel purrr readxl shiny shinyhelper shinythemes tidyverse]; }; icesAdvice = derive2 { name="icesAdvice"; version="2.1.1"; sha256="1i47kz45m45nn23j0ydq8vahw97py2im80yxadlqbvldjcm98vdw"; depends=[]; }; @@ -11467,17 +11666,17 @@ in with self; { icesTAF = derive2 { name="icesTAF"; version="4.2.0"; sha256="0xifza8s24gy09fibqdpkh0zc723jkx09ycx44gqffrx0ch8syds"; depends=[data_tree purrr roxygen2 TAF]; }; icesVMS = derive2 { name="icesVMS"; version="1.1.4"; sha256="0ppml34s4zz3vav08fjaj71bml8amaslw22zmib0scvw8k70jlir"; depends=[glue httr icesConnect icesVocab]; }; icesVocab = derive2 { name="icesVocab"; version="1.2.0"; sha256="0cd2w0w2m176mpfd3lzvxl88bcli1qrkjrli539i764nlyh0ipl0"; depends=[xml2]; }; - ichimoku = derive2 { name="ichimoku"; version="1.4.9"; sha256="1fp8rwh6qgx4g10ia4aykc8jqnhm2agy727ad1hw0qi50armcam6"; depends=[ggplot2 nanonext RcppSimdJson shiny xts zoo]; }; + ichimoku = derive2 { name="ichimoku"; version="1.4.12"; sha256="0nv0gfff38x254x1adlbwwfrjb6ws2f2yvinybc62gghaq947hry"; depends=[ggplot2 mirai nanonext RcppSimdJson shiny xts zoo]; }; icmm = derive2 { name="icmm"; version="1.2"; sha256="179q8w60g4yrv6wqgfmg47by1zc1mbhsdjgl7jq4wirqvwnxvgym"; depends=[EbayesThresh]; }; icosa = derive2 { name="icosa"; version="0.11.0"; sha256="1z1xajdg7q5n3ijjy45klrh4q3i855afl9088f42dwidyban3w3h"; depends=[igraph Rcpp sf sp]; }; icpsrdata = derive2 { name="icpsrdata"; version="0.6.1"; sha256="0mc96yj0nld63s4bhagha9dp8c2a2c7qdnk3lfh7yk0vq9ghjfin"; depends=[httr purrr rvest]; }; - icr = derive2 { name="icr"; version="0.6.3"; sha256="1g1gx0bbx6s8pqd5y0ckdi0r2kbg3lmr8djbaa7nj15jnf519zcx"; depends=[Rcpp]; }; + icr = derive2 { name="icr"; version="0.6.4"; sha256="18avxzbnpw53vgidyjfck970k3x77366x0b73xn2b1iczmfi0qj4"; depends=[Rcpp]; }; icrf = derive2 { name="icrf"; version="2.0.2"; sha256="1apd9klng8dhd9z9nzqzpx8i84rvpwgyam9mzyh8jk6vd49cgjaf"; depends=[]; }; icsw = derive2 { name="icsw"; version="1.0.0"; sha256="0g7bcqs0rpbs1p202i9wjbl8hhy3r196zambm044xyf7kvsbzzf6"; depends=[]; }; idar = derive2 { name="idar"; version="1.5"; sha256="0433kyhwzaicb10jmb6b6b6lbfhd5g2zsdrg6v02lndb2j7dlk5c"; depends=[ape FD picante spatstat spatstat_explore spatstat_geom spatstat_random]; }; idarps = derive2 { name="idarps"; version="0.0.3"; sha256="15ckavi7j4afwyq3m0z2kpq2j93wxmjfnhn7lh6r4ymwmj7bbsvy"; depends=[]; }; idbr = derive2 { name="idbr"; version="1.0"; sha256="0silsd3ydrrg924klga8dascxjfmi2czw7sz3ap2j7gkgvxcfcpv"; depends=[countrycode dplyr httr jsonlite purrr rnaturalearthdata sf]; }; - idcnrba = derive2 { name="idcnrba"; version="1.0.0"; sha256="12i8g8cfci7aqxqv7ir1ccdlddm1fpxp0j1lh6c2jp01kcf47br1"; depends=[base64enc dplyr DT flexdashboard haven htmlwidgets markdown miniUI nrba openxlsx readr rmarkdown rstudioapi shiny shinyjs srvyr survey tibble]; }; + idcnrba = derive2 { name="idcnrba"; version="1.1.0"; sha256="0kdsvp263q28fs0qdvrjshp02n6r01zwjj7sj7r24rxppn77xa40"; depends=[base64enc dplyr DT flexdashboard haven htmlwidgets markdown miniUI nrba openxlsx readr rmarkdown rstudioapi shiny shinyjs srvyr survey tibble]; }; ideamdb = derive2 { name="ideamdb"; version="0.0.9"; sha256="1f4dcv6c8ny7pik547f4840vhll26mzfcijnfsiqx31xhn0gsizd"; depends=[dplyr ggplot2 stringr tidyr]; }; idefix = derive2 { name="idefix"; version="1.0.3"; sha256="0jqjrg0qfzij5bx8r60wpjghsxnszdxgp58ynj10n7q9hc4fhsys"; depends=[dfidx dplyr MASS Rcpp RcppArmadillo Rdpack scales shiny tmvtnorm]; }; idem = derive2 { name="idem"; version="5.2"; sha256="0vgxrw7rdhnxrrsg46x6nd2zx938j1z41fr4gp9pjmh2q6rnnaxl"; depends=[BH mice Rcpp RcppEigen RcppParallel rstan rstantools sqldf StanHeaders survival]; }; @@ -11504,10 +11703,10 @@ in with self; { ifs = derive2 { name="ifs"; version="0.1.10"; sha256="0w27z3fjv007717dsn72bm9hbpgzd6pfib6maf9ihnsjllb6k0v5"; depends=[]; }; ig_vancouver_2014_topcolour = derive2 { name="ig.vancouver.2014.topcolour"; version="0.1.2.0"; sha256="0yclvm6xppf4w1qf25nf82hg1pliah68z7h3f683svv0j62q748h"; depends=[]; }; igate = derive2 { name="igate"; version="0.3.3"; sha256="0b8dk976z0764cmxwcq6w2f3akv7iivivharinq029p90b600qza"; depends=[dplyr ggplot2 kableExtra knitr rmarkdown stringr xtable]; }; - igcop = derive2 { name="igcop"; version="1.0.1"; sha256="0jl107mdwbldi319qflqjzy8vk02sr4nihky8jl5kcgr6x55qh6z"; depends=[Rcpp rlang vctrs]; }; + igcop = derive2 { name="igcop"; version="1.0.2"; sha256="19ffvkpsg41ba41jl3nd4s41kw4f4ncwcgpsf2h9cm0y19l4dja0"; depends=[Rcpp rlang vctrs]; }; iglu = derive2 { name="iglu"; version="3.5.0"; sha256="0nxdr09c3sb3fr970nakdh0vygn0g96w3wvgd1c064zr0ylprahz"; depends=[caTools dplyr DT ggplot2 ggpubr gridExtra gtable hms lubridate magrittr patchwork pheatmap plotly scales shiny tibble tidyr zoo]; }; igoR = derive2 { name="igoR"; version="0.1.5"; sha256="1sqkxf6mp77hf15jg992krgpkw36mx9c2fqg4xzz88s47wwwg5wy"; depends=[]; }; - igraph = derive2 { name="igraph"; version="1.5.1"; sha256="0jmii8kzs7hpf3xmlbfb8d21q79z7ramc18zcjamsjmdfwg0mndd"; depends=[cli cpp11 lifecycle magrittr Matrix pkgconfig rlang]; }; + igraph = derive2 { name="igraph"; version="1.6.0"; sha256="1f1v8pv3slmjw11w6a97885114whw6ykky3jviwj1rrqzcvwq3j1"; depends=[cli cpp11 lifecycle magrittr Matrix pkgconfig rlang]; }; igraphdata = derive2 { name="igraphdata"; version="1.0.1"; sha256="19w5npa4b8c054v94xlr7nmhhg2fhq4m8jbds86skp8zvipl4rkl"; depends=[]; }; igraphinshiny = derive2 { name="igraphinshiny"; version="0.1"; sha256="1ww5s4jfihzcx4k35lbhzsf54z720xh7b2p5alzk843m6rx77986"; depends=[igraph shiny]; }; igraphtosonia = derive2 { name="igraphtosonia"; version="1.0"; sha256="0vy9jnpjp68l8s0hi1l57j9p41c543h3iqv16pwl550f38zqp8j6"; depends=[igraph]; }; @@ -11516,18 +11715,18 @@ in with self; { iheatmapr = derive2 { name="iheatmapr"; version="0.7.0"; sha256="0ym796kf6d8cwd7nmgzy3ga7r8fyywddl3rr2hbn4cfmwhggv02l"; depends=[fastcluster ggdendro htmlwidgets jsonlite knitr magrittr RColorBrewer scales]; }; iheiddown = derive2 { name="iheiddown"; version="0.9.7"; sha256="1h7cb52wk0z5na543v78vjj2xh77kj3nwgl5vgqnf5186mrknh5v"; depends=[bib2df bookdown crayon dplyr fs gender ggplot2 pagedown pdftools readr rlang rmarkdown rstudioapi servr stringr tibble tidytext usethis xaringan]; }; ihpdr = derive2 { name="ihpdr"; version="1.2.1"; sha256="1qa9ndb5aqbmlqbl0ivh10ddah2rbhsc6928dml20fjgz7lggdww"; depends=[curl dplyr httr lubridate magrittr purrr readxl rlang rvest tidyr xml2]; }; - ijtiff = derive2 { name="ijtiff"; version="2.3.3"; sha256="0iv04g2ciz38ndrx1x5n5yy94zgk7h7qn35f9drynw19w1pxd95y"; depends=[checkmate cli dplyr fs magrittr purrr readr rlang strex stringr withr zeallot]; }; + ijtiff = derive2 { name="ijtiff"; version="2.3.4"; sha256="1abidy6fvz0qzxicviggkpvcq434cpbz4rm8nbxbfmyj3ndbadv9"; depends=[checkmate cli dplyr fs magrittr purrr readr rlang strex stringr withr zeallot]; }; imabc = derive2 { name="imabc"; version="1.0.0"; sha256="1p420jlvqqcqdjqp7y4mcjkzimw3qiygph5yrvmm75znax3fkg4z"; depends=[data_table foreach lhs MASS truncnorm]; }; - image_CannyEdges = derive2 { name="image.CannyEdges"; version="0.1.0"; sha256="0c8pvk91xyys6d2i03yy88kylb3jli5jkpq2s069n7p0yl3z7rr1"; depends=[Rcpp]; }; + image_CannyEdges = derive2 { name="image.CannyEdges"; version="0.1.1"; sha256="04maxzls7rg9kqmv1r5lhg11c18z0fkskn7im7b4plq5larw122y"; depends=[Rcpp]; }; image_ContourDetector = derive2 { name="image.ContourDetector"; version="0.1.1"; sha256="0h9nq6k99rfmldw1c00k2anlpbjbpm26pp1d7jg2wz334dvlvlij"; depends=[Rcpp sp]; }; image_CornerDetectionF9 = derive2 { name="image.CornerDetectionF9"; version="0.1.0"; sha256="04qy2yvgjmgb8r3piw6v5g97abljqv1nw7vn2wvn1npkq9lzj94x"; depends=[Rcpp]; }; - image_CornerDetectionHarris = derive2 { name="image.CornerDetectionHarris"; version="0.1.1"; sha256="150qz9wfpa33914x1am2ifzm0k2bdkmgk1qypvgxy958ginlaxsg"; depends=[Rcpp]; }; + image_CornerDetectionHarris = derive2 { name="image.CornerDetectionHarris"; version="0.1.2"; sha256="02ffpabfln4fzv45fyhaq0n9w8yndlx302q8fvkh1q3zn7cbd8n0"; depends=[Rcpp]; }; image_LineSegmentDetector = derive2 { name="image.LineSegmentDetector"; version="0.1.0"; sha256="1mx6vkmm9miwqdd5vil44if0dikzn5cy3kxvb3vp0kwfm8k36ib5"; depends=[Rcpp sp]; }; image_Otsu = derive2 { name="image.Otsu"; version="0.1"; sha256="0van4w7f3rnd2p5fsfjm7pq1j7ky90z9j0sir1mszjxjkcj6s9rz"; depends=[Rcpp]; }; image_binarization = derive2 { name="image.binarization"; version="0.1.3"; sha256="03p06qmv1s5i08hw4616qf7dqyqp3hrcibz1w66bh5dzv6yl9j7c"; depends=[magick Rcpp]; }; image_dlib = derive2 { name="image.dlib"; version="0.1.1"; sha256="0wrg6cwnrqwvgs5w1wjhc8ald7fij76xr2qbv6yb217v13ahwskm"; depends=[Rcpp]; }; image_libfacedetection = derive2 { name="image.libfacedetection"; version="0.1"; sha256="0mr7zrqd73mhvs918615lwsf2bgg63x3wh16wdpwhb2zd7ybm87a"; depends=[Rcpp]; }; - image_textlinedetector = derive2 { name="image.textlinedetector"; version="0.2.2"; sha256="0zbixw0j241il357n9mljcw4lvq6f1ddadx2a0ahykdf1w0vplyx"; depends=[magick Rcpp]; }; + image_textlinedetector = derive2 { name="image.textlinedetector"; version="0.2.3"; sha256="0cymn7swlrmqlkjs3cih8l53xqgjhiimnmlnagzzwd72ijikz1ll"; depends=[magick Rcpp]; }; image2data = derive2 { name="image2data"; version="1.0.1"; sha256="03fvl7fj7kc6i6xgyrixwk0ahgmlg26ihvwvkxh6yxzhjj48syfq"; depends=[readbitmap]; }; imageData = derive2 { name="imageData"; version="0.1-62"; sha256="1q5s6zda1vvinp23afxjys3zl17xaidb11a7iibxpz6rla75183d"; depends=[dae GGally ggplot2 Hmisc RColorBrewer readxl reshape]; }; imagefluency = derive2 { name="imagefluency"; version="0.2.4"; sha256="1kssg6lj29f7c2isnzw98crygpj761q0qp38i7zs8008cwbch4cy"; depends=[magick OpenImageR pracma R_utils readbitmap]; }; @@ -11543,13 +11742,13 @@ in with self; { imbibe = derive2 { name="imbibe"; version="0.1.1"; sha256="03vaz5vippnmbgs2l4gxpmsnrkxjw7d156ng13r07zicq43g9gwp"; depends=[magrittr Rcpp RNifti]; }; imcExperiment = derive2 { name="imcExperiment"; version="0.99.0"; sha256="0fagasb94q7gxx49c7n4p2cb9j3n5qnfx86s7nvz4naicy96qbyr"; depends=[S4Vectors SingleCellExperiment spatstat_geom SummarizedExperiment]; }; imdbapi = derive2 { name="imdbapi"; version="0.1.0"; sha256="11v7c0s7qqf02b186md5lhgkgmywkn8lmmanlz3gfcxca26g047y"; depends=[dplyr httr stringr]; }; + imf_data = derive2 { name="imf.data"; version="0.1.3"; sha256="0cm7jjv3xal81h2qsh24f3y6djga47nksiyzgv8iyyb5fdp1xcpr"; depends=[curl jsonlite]; }; imgpalr = derive2 { name="imgpalr"; version="0.3.2"; sha256="0wdddswyakcgwvp75ydp8q3wmxdgrms8r2lh9jm024f8im3j5ccw"; depends=[downloader dplyr farver jpeg magrittr tibble]; }; imgrec = derive2 { name="imgrec"; version="0.1.3"; sha256="0va04b264v2ywvqdgmvigygsd5f6vdy5cj2ip2nsyi1fzh68hadx"; depends=[base64enc dplyr httr jsonlite knitr rlang]; }; imguR = derive2 { name="imguR"; version="1.0.3"; sha256="14f7ghgc8rbrpqb21rinfbrj1wh80i6ii0awwi814152v5qzj4b3"; depends=[httr jpeg png]; }; iml = derive2 { name="iml"; version="0.11.1"; sha256="0fi37lv9czaxcc123f6r57607shqhs83ks96n2n0b93dl1qs0j52"; depends=[checkmate data_table Formula future future_apply ggplot2 Metrics prediction R6]; }; immcp = derive2 { name="immcp"; version="1.0.3"; sha256="0xjk0a1dr45rnf6fzir74805winn1wppci2wk7wr2pwpmba86vzq"; depends=[arules clusterProfiler DOSE dplyr factoextra ggheatmap ggplot2 igraph magrittr Matrix openxlsx org_Hs_eg_db pbapply proxyC purrr rlang visNetwork]; }; immer = derive2 { name="immer"; version="1.4-15"; sha256="0vif1q04q847pn1hxr3mg70wwfcvvc8n8ag27s7c2bpza2vj8khc"; depends=[CDM coda psychotools Rcpp RcppArmadillo sirt TAM]; }; - immunarch = derive2 { name="immunarch"; version="0.9.0"; sha256="1yjmr7n352xnkrw9pa122kb716y02bmjr6lw6413gn77bwkxnfpy"; depends=[airr ape circlize data_table doParallel dplyr dtplyr factoextra fpc ggalluvial ggplot2 ggpubr ggraph ggrepel ggseqlogo glue igraph jsonlite magrittr MASS patchwork phangorn pheatmap plyr purrr Rcpp readr readxl reshape2 rlang rlist Rtsne scales shiny shinythemes stringdist stringi stringr tibble tidyr tidyselect UpSetR uuid]; }; immuneSIM = derive2 { name="immuneSIM"; version="0.8.7"; sha256="0brj12xnkzmn3n91vb39fq3q68wmzmwx9l38dl38yypp0l8pknjl"; depends=[Biostrings data_table ggplot2 ggthemes igraph Metrics plyr poweRlaw RColorBrewer repmis reshape2 stringdist stringr]; }; imola = derive2 { name="imola"; version="0.5.0"; sha256="087zdzn1vkyvqrdlwnackr6jyacrhg69q4b77s8z477kplickw8x"; depends=[glue htmltools magrittr shiny stringi yaml]; }; imp4p = derive2 { name="imp4p"; version="1.2"; sha256="1ld8bjjrlij9m7xns7izibag9mndrfh21xgq1w7g3bh5ag9p9fs0"; depends=[Iso missForest missMDA norm Rcpp truncnorm]; }; @@ -11587,7 +11786,7 @@ in with self; { incase = derive2 { name="incase"; version="0.3.2"; sha256="06qzzvxxwi0dp7ln864qszvk9xqbb4rgx5mbnkcvji7in6k2yj0n"; depends=[backports cli magrittr plu rlang]; }; incgraph = derive2 { name="incgraph"; version="1.0.1"; sha256="0zjvxk2krdlm5bcr0m80nxy46f69a1xadfjw5sjw249b28wdclml"; depends=[BH dplyr orca purrr Rcpp testthat tibble]; }; incidence = derive2 { name="incidence"; version="1.7.3"; sha256="1wdxh2p7scm419fqki0i7vsz45rd7557h5n3zf9fshb8x1fdf2z7"; depends=[aweek ggplot2]; }; - incidence2 = derive2 { name="incidence2"; version="2.2.1"; sha256="1wd13m46siin6fcjhsk5r836ncplpq22by5f1b1fdpp5my6381ps"; depends=[data_table grates pillar]; }; + incidence2 = derive2 { name="incidence2"; version="2.2.3"; sha256="0l8qk8wvwnnjw81gvsm3f4j0qmj7801mka03wbnkhr90ii23f9x6"; depends=[data_table grates pillar]; }; incidental = derive2 { name="incidental"; version="0.1"; sha256="012pdwrkzlbnrrkvy67l6nvs1lrjgrzhfh3v4rqzk2ypdvfm3wmx"; depends=[dlnm ggplot2 MASS matrixStats numDeriv]; }; incidentally = derive2 { name="incidentally"; version="1.0.2"; sha256="063m672ym9w5zmzvdhr17smqy1mffkl3vls7nhpsxc4bjswqls2g"; depends=[igraph Matrix xml2]; }; inctools = derive2 { name="inctools"; version="1.0.15"; sha256="0ikldiwgizs2p9vcalk5729dr6krysnyr4ni0ybg9gljw7iafdlf"; depends=[binom cubature doParallel dplyr foreach ggplot2 glm2 magrittr plyr pracma rlang tibble tmvtnorm]; }; @@ -11595,18 +11794,18 @@ in with self; { indelmiss = derive2 { name="indelmiss"; version="1.0.10"; sha256="1dqdk6glzm40y4zxc9bfjg5qsvd2i4xm55w8f7671gyjkzjzavv5"; depends=[ape numDeriv phangorn Rcpp]; }; independenceWeights = derive2 { name="independenceWeights"; version="0.0.1"; sha256="07650hc93dxfx0sl2mdjzg2r84117q7ylbb9yfm3lh7dlb014lxp"; depends=[locfit osqp]; }; index0 = derive2 { name="index0"; version="0.0.1"; sha256="1kdjc86312a9x800h0i7z0z7bwbxyrqds8wnrm15aljkvk83xwxl"; depends=[]; }; + india = derive2 { name="india"; version="0.1"; sha256="1xk617s5njwdl6sz2vgprxbikv71azx9d79rmkvbdiraj740jsz5"; depends=[fastmatrix L1pack]; }; indicspecies = derive2 { name="indicspecies"; version="1.7.14"; sha256="15cfmjwblq3fcd2mymvh9p09jfgcifs2sngwnlfz3290glfb6zzm"; depends=[permute]; }; indiedown = derive2 { name="indiedown"; version="0.1.1"; sha256="0r46r6s0asd182gs5map4wilhfb7jhgrcinnl36ib3q1xxn06457"; depends=[cli fs gfonts rlang withr]; }; indirect = derive2 { name="indirect"; version="0.2.1"; sha256="1iaks18xcxqr2afzbzgxj4jr77p6gw2zmgb1398cgqkgdwb1yj13"; depends=[gplots MASS]; }; industRial = derive2 { name="industRial"; version="0.1.0"; sha256="0zgnykbr71pi3nii178ijmzd8ijwf3g8y8yz6g3jy4c0by7w676s"; depends=[dplyr ggplot2 lattice magrittr rlang SixSigma tidyr]; }; inegiR = derive2 { name="inegiR"; version="3.0.0"; sha256="1rhkdmpz7mxi7ddyygss5rlh3c8hgxhzdk3fnvnlizc1l55cc6c0"; depends=[jsonlite lubridate plyr tibbletime XML zoo]; }; - ineptR = derive2 { name="ineptR"; version="0.2.1"; sha256="1rdw5idqaq9h2bys67lmks0dkrvr1a0272nr52ylf0cpglafs3n4"; depends=[dplyr httr httr2 lifecycle magrittr progressr purrr readr stringr tibble tidyr]; }; ineq = derive2 { name="ineq"; version="0.2-13"; sha256="09fsxyrh0j7mwmb5hkhmrzgcy7kf85jxkh7zlwpgqgcsyl1n91z0"; depends=[]; }; ineq_2d = derive2 { name="ineq.2d"; version="0.1.0"; sha256="1l1d29krk1v66v4x66py8s6p30x6xw6d969ixcqnfsdyvbz3pwly"; depends=[]; }; ineqJD = derive2 { name="ineqJD"; version="1.0"; sha256="0anv384jwzn5gkc0jqsl81bkmrjd21br99c5q30xd6ncxavj4s57"; depends=[]; }; inet = derive2 { name="inet"; version="0.1.0"; sha256="1kjy2kgi5v29yk6pv776gwdqzkscjh96p3iv1j906vh47zp8wrag"; depends=[glmnet hdi MASS]; }; infer = derive2 { name="infer"; version="1.0.5"; sha256="1zs1c22zc255m23in99cqp2chpdkski002rywmkdzwf6nd96mly7"; depends=[broom dplyr generics ggplot2 glue magrittr patchwork purrr rlang tibble tidyr vctrs]; }; - inferCSN = derive2 { name="inferCSN"; version="0.99.0"; sha256="0ij283mkqi6l1q8hdqsdbn3q3q0mzahvswq93cn3sx7ndwqcpfv5"; depends=[ComplexHeatmap data_table doParallel dplyr foreach ggnetwork ggplot2 ggraph Matrix patchwork progress purrr Rcpp RcppArmadillo]; }; + inferCSN = derive2 { name="inferCSN"; version="0.99.8"; sha256="0czi0sraxhdjwima1g4xyqv6gr8b6fhm0xjbzfzpqdghh01ss299"; depends=[ComplexHeatmap data_table doParallel dplyr foreach ggnetwork ggplot2 ggraph Matrix patchwork progress purrr Rcpp RcppArmadillo]; }; inferference = derive2 { name="inferference"; version="1.0.2"; sha256="171h9zhvaza7fklcg07wk9sm8k2fy39k3cdjkzb3vk8p8acd051v"; depends=[Formula lme4 numDeriv]; }; inferr = derive2 { name="inferr"; version="0.3.1"; sha256="1ma90f31jcd65l5v3wqbx4x61gw3iay1a2hwjsd5aln1ivbgmzsv"; depends=[data_table magrittr Rcpp]; }; infinitefactor = derive2 { name="infinitefactor"; version="1.0"; sha256="0j6f9q8z81znwakyx4h0l8ypz0y4yv11d7l3rwljmn4rgspyjl5c"; depends=[ggplot2 Rcpp RcppArmadillo reshape2]; }; @@ -11616,7 +11815,7 @@ in with self; { influence_SEM = derive2 { name="influence.SEM"; version="2.3"; sha256="0z83rvlri9g30291p0wv4s0jhiy6445lcrqrd4n1crach9672yzy"; depends=[lavaan]; }; influenceAUC = derive2 { name="influenceAUC"; version="0.1.2"; sha256="0pscwfxs2y780lzd5sxldnnkzzs2lsjdwz71z44kn7884wqmikpm"; depends=[dplyr geigen ggplot2 ggrepel ROCR]; }; influenceR = derive2 { name="influenceR"; version="0.1.5"; sha256="137m40xs9xfqcm88gi7w86b310rysf3a973wp7x3543n1y1f8r41"; depends=[igraph Matrix]; }; - influential = derive2 { name="influential"; version="2.2.7"; sha256="19ha1hcirvxpp5nfmgk86jhlq0zprb81rzghijcjb8vpz80ldcdm"; depends=[coop data_table doParallel foreach ggplot2 igraph janitor ranger]; }; + influential = derive2 { name="influential"; version="2.2.9"; sha256="0xzmc15xaw68xywsfjxzjf57ncyfvxv9qj8dzflahr5l1jnfcg7g"; depends=[BiocManager coop data_table doParallel foreach ggplot2 igraph janitor ranger]; }; influxdbclient = derive2 { name="influxdbclient"; version="0.1.2"; sha256="0zyb6ycyw03kwg8f27vhy14i0bh58j040bjbi9vm1m692hcvcqcd"; depends=[bit64 httr jsonlite nanotime plyr R6]; }; influxdbr = derive2 { name="influxdbr"; version="0.14.2"; sha256="03dzw86mvbc8w38q9skjki1z17vc04k9q8dx7sd3xg6xbr10f9d9"; depends=[dplyr httr jsonlite magrittr purrr rlang tibble tidyr xts zoo]; }; infoDecompuTE = derive2 { name="infoDecompuTE"; version="0.6.2"; sha256="0r1capiv4zr31dsy0sqly9zb00i86zq2ihbgsmb5g4cy0f04xlqz"; depends=[MASS]; }; @@ -11626,22 +11825,21 @@ in with self; { ingredients = derive2 { name="ingredients"; version="2.3.0"; sha256="0jvxkdhbc28a096hi0y6519cj4im4mnl1vz9s563dvb5g4vb7r7b"; depends=[ggplot2 gridExtra scales]; }; ini = derive2 { name="ini"; version="0.3.1"; sha256="04yqij344dwm0xqgara8xia42mlmij3i8711qbb5534w05a1l6bv"; depends=[]; }; injectoR = derive2 { name="injectoR"; version="0.2.4"; sha256="0sa32cspp6y3m04yfmd02kxx55mk7l9jxf4r9pk1a6k3sqnj6fl8"; depends=[]; }; - injurytools = derive2 { name="injurytools"; version="1.0.2"; sha256="1n8nr7mvmsrpzyirli3kmhn48z4mf4j2nj8k5nsl62jz5qsk7dlc"; depends=[checkmate dplyr forcats ggplot2 lubridate metR purrr rlang stringr tidyr tidyselect withr]; }; - inlabru = derive2 { name="inlabru"; version="2.9.0"; sha256="198amkx9s9lsdd3kwglmr62kvs8qlf3kw606dpmw83kip2v6gxwp"; depends=[dplyr fmesher lifecycle magrittr Matrix MatrixModels plyr rlang sf sp terra tibble withr]; }; + injurytools = derive2 { name="injurytools"; version="1.0.3"; sha256="0nk6rnyg8f2n7fki42xr8vradzkkmljrvd1ynh9p781849y77jz0"; depends=[checkmate dplyr forcats ggplot2 lubridate metR purrr rlang stringr tidyr tidyselect withr]; }; + inlabru = derive2 { name="inlabru"; version="2.10.1"; sha256="1sazv0jz458lvdslza1d4y53q6ws9rn2g6sfgv3hin30qk6jzizg"; depends=[dplyr fmesher lifecycle magrittr Matrix MatrixModels plyr rlang sf sp terra tibble withr]; }; inlcolor = derive2 { name="inlcolor"; version="1.0.5"; sha256="0998smgzkspij2fa5si1sk5dfpas3645crk5hqkdg9ip228cqn16"; depends=[checkmate rlang scales]; }; inline = derive2 { name="inline"; version="0.3.19"; sha256="1mcr9hgq6kkq03n7pkcccxa7vg8jma0q7lfxc5vvkc6snydk1s8f"; depends=[]; }; inlinedocs = derive2 { name="inlinedocs"; version="2023.9.4"; sha256="115mng6fmjacb2mqa85mdqz79yfpgn08rshigsqcb2h234k0wnk3"; depends=[]; }; inlpubs = derive2 { name="inlpubs"; version="1.0.6"; sha256="0al6a4lidc9hk7l2r233kyq7fcwsd7cbfcm813jqy89nn187cmis"; depends=[checkmate tm]; }; - innsight = derive2 { name="innsight"; version="0.2.0"; sha256="0ckhxicgvvrwzsm1x396xp2fj6g7v2m2ga4gzvqrw4my10w4y3di"; depends=[checkmate cli ggplot2 R6 torch]; }; - ino = derive2 { name="ino"; version="1.0.2"; sha256="18pl1scg8lxz0x1r2ksvrlpr7qvwp88bxvwiz4j4w3if5w0i0qhk"; depends=[cli crayon doSNOW dplyr forcats foreach ggplot2 glue mvtnorm optimizeR reshape2 rlang scales]; }; + innsight = derive2 { name="innsight"; version="0.3.0"; sha256="17di0a7jff4rg944h247kjbd76vai2hsg9gif1q871c7lq04fw4s"; depends=[checkmate cli ggplot2 R6 torch]; }; inops = derive2 { name="inops"; version="0.0.1"; sha256="1y402a9r542hpwd1nfdc07mbgnf9alpnykl9di1v8fy0qly8s0an"; depends=[]; }; inpdfr = derive2 { name="inpdfr"; version="0.1.12"; sha256="1pargjl2v1kxxbdzf2jjcw3yxyqmxkq30rz3y5xywigq1ab2lpsw"; depends=[cluster entropart metacom R_devices RColorBrewer SnowballC stringi tm wordcloud]; }; inplace = derive2 { name="inplace"; version="0.1.2"; sha256="06jb8xzjqywdww8j2i59c8663dfbrhnvj0lh3xm73j39sig6vh7l"; depends=[Rcpp]; }; - insane = derive2 { name="insane"; version="1.0.2"; sha256="1i8lijxa78i76dicdvcpp5c12il0341dsfjccn8m8axnsq7qg81h"; depends=[broom dplyr DT ggplot2 ggpubr ggthemes glue patchwork purrr readxl shiny tidyr]; }; + insane = derive2 { name="insane"; version="1.0.3"; sha256="14j11xmfcj5y39qmzi75payilvz5hcdj77l75pfsi8bhv5z97ykb"; depends=[broom dplyr DT ggplot2 ggpubr glue patchwork purrr readxl shiny tidyr]; }; insect = derive2 { name="insect"; version="1.4.2"; sha256="0pbac9il1jrhii0hxvvqjc3phyr2iamxwzanxx5mrkyjh2wsl3jh"; depends=[ape aphid kmer openssl phylogram RANN seqinr xml2]; }; insectDisease = derive2 { name="insectDisease"; version="1.2.2"; sha256="1ncj5fgmx19caf8m2p3ij5iamk941m9y725gs0nqpa9m6zfnzgf8"; depends=[plyr taxize]; }; insee = derive2 { name="insee"; version="1.1.5"; sha256="1f6y19dysm0mh3fkrwnqcgi5j1lzy08m3ij3wrx26q2vgwv5lkfg"; depends=[crayon dplyr httr openssl purrr rappdirs rlang stringr tibble tidyselect xml2]; }; - insight = derive2 { name="insight"; version="0.19.6"; sha256="1gnxhszwccmvjarq47p7s09jrkhvd8zkz632ysxz6dgxfpqn9zqh"; depends=[]; }; + insight = derive2 { name="insight"; version="0.19.7"; sha256="01hzwz05zz8kxf8hgmz6i4npxwv12723bkv9jk3hhhghlc9lr9a1"; depends=[]; }; inspectdf = derive2 { name="inspectdf"; version="0.0.12"; sha256="1k9dszjfpvpc10qr9nbw5r55mdwslgblhlrgnqjnwx9i89j03mlk"; depends=[dplyr ggfittext ggplot2 magrittr progress Rcpp rlang tibble tidyr]; }; inspector = derive2 { name="inspector"; version="1.0.3"; sha256="16gc98af6wmwf32fz8zml5v17g5lkiybzyzsqgphx0k19hrbc6kr"; depends=[Rdpack]; }; instaR = derive2 { name="instaR"; version="0.2.4"; sha256="0c4m471ragkpksr0h21cdgnjxcknf01xqz543dahxgzjg9ncjwhg"; depends=[httr jsonlite]; }; @@ -11655,7 +11853,8 @@ in with self; { intRinsic = derive2 { name="intRinsic"; version="1.0.1"; sha256="0kx40w1228ppvvi3g54pw7552637azix809rpijqcfnps7p7kj1p"; depends=[dplyr FNN ggplot2 knitr latex2exp MCMCpack Rcpp RcppArmadillo reshape2 rlang salso]; }; intRvals = derive2 { name="intRvals"; version="1.0.1"; sha256="013n0qp12dqnnk931rvs6lql2r13z5j4jf27s4aqfyd80mnl5w7k"; depends=[lme4 plyr]; }; intSDM = derive2 { name="intSDM"; version="2.0.2"; sha256="01gsq853vxkch69pmgypd4h5yfq1fnawa7qlamxglcxy6zmn3269"; depends=[blockCV geodata ggplot2 giscoR inlabru PointedSDMs R6 rgbif sf terra tidyterra]; }; - intamap = derive2 { name="intamap"; version="1.5-6"; sha256="1d269rg1wf431v6p9blxspnnps8lyzcc8wid5qgy6hj3wrya0a37"; depends=[automap doParallel evd foreach gstat MASS MBA mvtnorm sf sp]; }; + intamap = derive2 { name="intamap"; version="1.5-7"; sha256="1rvjqv58bfsya6sc9kbqkln3f9zw3cvqhqsdxfsksvjybnmychxq"; depends=[automap doParallel evd foreach gstat MASS MBA mvtnorm sf sp]; }; + intamapInteractive = derive2 { name="intamapInteractive"; version="1.2-6"; sha256="0mdn4fmc7skmf61pshyyc6g3xlxa2friyy0kzhn5d6q5ni3fm7rb"; depends=[automap gstat intamap sf sp spatstat_geom spcosa]; }; intccr = derive2 { name="intccr"; version="3.0.4"; sha256="1bpzsik6yypkxskp7ar8a1j0wmndsx41xn4kaffz0fni988l23hc"; depends=[alabama doParallel foreach MASS splines2]; }; intcensROC = derive2 { name="intcensROC"; version="0.1.3"; sha256="1raqjc3g9fgyd01iax7hrmkk3nzzfi34a1ywhjrkwv1n9gsc58ns"; depends=[pracma Rcpp RcppEigen]; }; integIRTy = derive2 { name="integIRTy"; version="1.0.7"; sha256="15f04p97fvqdq971adyafm3ljirfxz90lv096fdqn2vk0sq5dwyj"; depends=[abind doParallel foreach ltm MASS mclust]; }; @@ -11663,8 +11862,8 @@ in with self; { intendo = derive2 { name="intendo"; version="0.1"; sha256="1qkgb0yrlq2k9cg934v5pj8bb6kla911v3z7sadd1p7m8a10kdyw"; depends=[]; }; intensegRid = derive2 { name="intensegRid"; version="0.1.2"; sha256="1dhk14rxy7c2pawcg89bhbnx30nzi5hppywmf41aa7f40x2m7wxs"; depends=[dplyr httr jsonlite lubridate magrittr purrr rlang tibble tidyr]; }; intensitynet = derive2 { name="intensitynet"; version="1.4.0"; sha256="0rgm8rj95r269ww7snwv6czqdxabhzwxyaf3587scprhhn7pncy3"; depends=[ggplot2 igraph intergraph Matrix sna spatstat_geom spdep viridis]; }; - interactionR = derive2 { name="interactionR"; version="0.1.6"; sha256="1k6fn0y69s8dq14yqqai4qm97cdyp7sfn8ni19xs2h8hwgmxdhf9"; depends=[car flextable msm officer]; }; - interactionRCS = derive2 { name="interactionRCS"; version="0.1.0"; sha256="07yhcgp9jc0fd29drsvdcpg8hw3zafr3njkx4qa5qhp3jsn0m3pm"; depends=[boot mlbench msm pryr pspline rms survival]; }; + interactionR = derive2 { name="interactionR"; version="0.1.7"; sha256="1ydyhxpsay9w4nxf6yq77czc5cs4gnapx2sw6myfqvw82jpl6kfz"; depends=[car flextable msm officer]; }; + interactionRCS = derive2 { name="interactionRCS"; version="0.1.1"; sha256="0j9wyhbcj0w0w553k6ba27rx757f4pdxs3qzlzm97hh5xfcffya1"; depends=[boot msm pryr pspline rms stringr survival]; }; interactionTest = derive2 { name="interactionTest"; version="1.2"; sha256="0ycr839l07xahakr4r2jvlmd0fcxfm4qi3g8agnyh24c2kwl3ck2"; depends=[]; }; interactions = derive2 { name="interactions"; version="1.1.5"; sha256="16lrlj0rc9bkxgmackpvcx8wx9pbsnr55vak6zx022ss820h3ljj"; depends=[cli crayon generics ggplot2 jtools rlang tibble]; }; interca = derive2 { name="interca"; version="0.1.2"; sha256="1ddv1rphdpvxbqbmrj3bgsdpksq84yjxdgygms5pw8jdz8yjyirs"; depends=[dplyr DT factoextra FactoMineR ggplot2 ggrepel magrittr openxlsx readr readxl rmarkdown shiny shinyFeedback shinyWidgets waiter]; }; @@ -11676,8 +11875,10 @@ in with self; { interimApp = derive2 { name="interimApp"; version="0.0.1"; sha256="1g2f1plsgzqf277jy2afhchjlcamr9znm02rj4rvky7nnp63gph0"; depends=[interim shiny shinyBS]; }; interleave = derive2 { name="interleave"; version="0.1.1"; sha256="0316nzcms9hawjvslvbkpb5rg3jbmzsy1dzvmy1hi80zlyrm891v"; depends=[geometries Rcpp]; }; interlineaR = derive2 { name="interlineaR"; version="1.0"; sha256="0y1ym6iwly8sv94pdzwv2qy1g7z4hpqlrbcrpb1ds5a62a6axqj5"; depends=[reshape2 xml2]; }; - interp = derive2 { name="interp"; version="1.1-4"; sha256="01jdwcv25khnma7i0zcynkr5sw0dzb2agqimhrpdg91jh4w5sysg"; depends=[deldir Rcpp RcppEigen]; }; + interp = derive2 { name="interp"; version="1.1-5"; sha256="082b1sx7m62csqig582syki8ny9vwxk311rh8hp1cmh1l5qhjlhc"; depends=[deldir Rcpp RcppEigen]; }; interplot = derive2 { name="interplot"; version="0.2.3"; sha256="1qs0ni16rbjilkahn15yn9sil3ba4n935bxpdbpwlsjina504jqj"; depends=[abind arm dplyr ggplot2 interactionTest purrr]; }; + interpolation = derive2 { name="interpolation"; version="0.1.1"; sha256="02g8iv0qm9bw22qfszln42jxkv4ybrq5gvfw04j2v1zj9z2k3mn9"; depends=[BH Rcpp RcppCGAL]; }; + interpolators = derive2 { name="interpolators"; version="1.0.1"; sha256="17gq06lwypzbr23rp92cdlwcrkc2fwf0p1pj3g01bg4vv6i807ac"; depends=[BH Rcpp]; }; interpret = derive2 { name="interpret"; version="0.1.33"; sha256="17619lyfbvkssls5l3ymlvq72b2162w0n9r7xa5n8wjnnx8mlipz"; depends=[]; }; interpretCI = derive2 { name="interpretCI"; version="0.1.1"; sha256="1jg2dpfrhb1kij2z0gq4sw1lrb4v2sky13dpfmdnaz2k5xqnih2s"; depends=[aplot dplyr english flextable ggbeeswarm ggplot2 moonBook officer patchwork purrr RColorBrewer rlang rmarkdown rstudioapi scales tidyr]; }; interpretR = derive2 { name="interpretR"; version="0.2.5"; sha256="08vcjh0cxa070c7swg6mm4ygj58r5h8jzpz1h2wl72kxn2ka93yx"; depends=[AUC randomForest]; }; @@ -11686,13 +11887,13 @@ in with self; { intervalaverage = derive2 { name="intervalaverage"; version="0.8.0"; sha256="07p9r358q3jxm8n7nypxmvpfnh61njivcwaplgzzxrlcbway6fq9"; depends=[data_table Rcpp]; }; intervals = derive2 { name="intervals"; version="0.15.4"; sha256="13wzwg5yc1wr8ww8bhv9x5ha78yajsfmb9phq4nbgrxkmbiy3h2h"; depends=[]; }; intervcomp = derive2 { name="intervcomp"; version="0.1.2"; sha256="1l6x1fl84li6is3b92b96q3fbv0rpgqy2lvw9cbi2cq8nh9imnyx"; depends=[]; }; - inti = derive2 { name="inti"; version="0.6.2"; sha256="1lmm0v76c4ksvp9zrh163cb55c52d112wfvslyxm1vapvpcdmvk7"; depends=[agricolae dplyr DT emmeans FactoMineR ggplot2 lme4 purrr shiny stringi stringr tibble tidyr]; }; + inti = derive2 { name="inti"; version="0.6.3"; sha256="0bhayfhzlrx9rxxrg704ddvfdazj6wckf1zh7rpdr5sclj88kj31"; depends=[agricolae dplyr DT emmeans FactoMineR ggplot2 lme4 purrr shiny stringi stringr tibble tidyr]; }; intkrige = derive2 { name="intkrige"; version="1.0.1"; sha256="1p3fn5nzn1iliy025187k590qrsw3z3d47p67gzwwd6h050yrl86"; depends=[gstat raster Rcpp RcppArmadillo Rdpack sp]; }; intmap = derive2 { name="intmap"; version="1.0.0"; sha256="1fxq0jkahangv4pwsvnrr4iq2y6qp61l81b28yzwl74b0lmx6hbf"; depends=[BH maybe R6 Rcpp]; }; intmed = derive2 { name="intmed"; version="0.1.2"; sha256="0amcqzinj35yvb9nfy808bz098dqmnds13z335lgqm6sykriyjpl"; depends=[doParallel dplyr foreach MASS mice stringr tibble]; }; intradayModel = derive2 { name="intradayModel"; version="0.0.1"; sha256="1rpcm6bix06lwkj7wndy3zarbxwm24x15vwwb2gfqj0527pvk0gl"; depends=[ggplot2 magrittr patchwork reshape2 scales xts zoo]; }; intrinsicDimension = derive2 { name="intrinsicDimension"; version="1.2.0"; sha256="0cka20ifxx9njnvp18bzhrvmh3cwjnxkc0a23qzi43dahc51ijbc"; depends=[yaImpute]; }; - intrinsicFRP = derive2 { name="intrinsicFRP"; version="1.0.0"; sha256="01hg53fb0xgkmgz3vnv6mf7cqwhlxw7w9pk2i92gsdij5x3cf4xx"; depends=[Rcpp RcppArmadillo]; }; + intrinsicFRP = derive2 { name="intrinsicFRP"; version="2.0.1"; sha256="1grcbqncx2j0y71r3l7qapj4d4sgzdgqfz4336lgbndpqvlc538x"; depends=[Rcpp RcppArmadillo]; }; intrinsicKappa = derive2 { name="intrinsicKappa"; version="0.1"; sha256="13m0k1r6l2havl6qi8m6403zkdbma47i29yb6xr9xnyqij2392qz"; depends=[]; }; intrval = derive2 { name="intrval"; version="0.1-2"; sha256="1fbgl2r359aml6cfz8x7h0381kxfx1dy0hr0c7012vr66f6c2lhi"; depends=[]; }; intsurv = derive2 { name="intsurv"; version="0.2.2"; sha256="02ds4gikrgg19knylg68ziani702dyhqc37fhf9j7awa1qxy2r9l"; depends=[Rcpp RcppArmadillo]; }; @@ -11711,26 +11912,29 @@ in with self; { ioanalysis = derive2 { name="ioanalysis"; version="0.3.4"; sha256="0nprfqhwy5j11f5xgzaz8iw991cvgdcdmfca8sdvw8mci0cwkh5m"; depends=[ggplot2 lpSolve plot3D]; }; ioncopy = derive2 { name="ioncopy"; version="2.2.2"; sha256="133ay7xvdigs4q9yx5bcwdgsgrgzk2n6xn412dkq3bg95pp1angr"; depends=[shiny zip]; }; ionr = derive2 { name="ionr"; version="0.3.0"; sha256="18rv5n5gihb6pz36s45yj17sdjsbj4485k4lnggdjj1gbbjkz2ni"; depends=[gplots psych]; }; + iopspackage = derive2 { name="iopspackage"; version="2.1.0"; sha256="1l51h8ljcqdrbcn10d0x98ycnz8xd9da4r6y4wc8dbkvaafynm42"; depends=[dplyr economiccomplexity openxlsx readxl tidyr usethis]; }; iopsych = derive2 { name="iopsych"; version="0.90.1"; sha256="0adxwxnb1zdlld3icdggx7cq6cp8z4h1jf105485w322a8c6s9ik"; depends=[mco mvtnorm]; }; iosmooth = derive2 { name="iosmooth"; version="0.94"; sha256="06xgzhjgb6pznjzfli193q7kn8sh5jmqsssgymwj98bw7iwn4q3z"; depends=[]; }; - iotables = derive2 { name="iotables"; version="0.9.1"; sha256="1xs6hfr1h8mpm2ksbrx7kjqi01rvgfczsnxmv70czwpsc3lbzrdf"; depends=[assertthat dplyr eurostat forcats glue kableExtra knitr lubridate magrittr plyr readxl rlang tibble tidyr tidyselect]; }; + iotables = derive2 { name="iotables"; version="0.9.3"; sha256="15x7i2l298l1fxq2vy7p1naixmy39024y4sb542k8c3ashvp37gi"; depends=[assertthat dplyr eurostat forcats glue kableExtra knitr lubridate magrittr plyr readxl rlang tibble tidyr tidyselect]; }; iotarelr = derive2 { name="iotarelr"; version="0.1.4"; sha256="0bs2m5528cq4lsq33cs77n16hpd72bcbv64axyw95jbk71s48zrx"; depends=[ggalluvial ggplot2 gridExtra Rcpp rlang]; }; - iotools = derive2 { name="iotools"; version="0.3-2"; sha256="07q0z0kszm1xx5hfhisfliyrcsxd8dc5mx0a2bwwnv5l1xzmix17"; depends=[]; }; + iotools = derive2 { name="iotools"; version="0.3-5"; sha256="12xlf31aawj5sxanb2m63r665a9x5v87q4ig8qkvaygpdg51gycw"; depends=[]; }; ip2location = derive2 { name="ip2location"; version="8.1.3"; sha256="1nbqg4nnhxwcwi9kgbyjkikdwh8djglxkrw0lcqfvaqn4n7qf1i5"; depends=[ggplot2 jsonlite maps reticulate scales]; }; ip2proxy = derive2 { name="ip2proxy"; version="1.2.0"; sha256="0h0krm4sli400mmk8jw9jnxlp773barnyx3z66y45iqr3m23z6lx"; depends=[ggplot2 jsonlite maps reticulate scales]; }; ipADMIXTURE = derive2 { name="ipADMIXTURE"; version="0.1.0"; sha256="1fl7nyxg7gakjdggdc311wf037zaxwpqsw3ax7liq1pvw6flb9h7"; depends=[ape treemap]; }; ipa = derive2 { name="ipa"; version="0.1.0"; sha256="029vz7pb37vnqm7x6h53p0y7z0nx2s36yklyfn9sz21gknsi983j"; depends=[stringi]; }; - ipaddress = derive2 { name="ipaddress"; version="1.0.1"; sha256="1b3w2iq3zbfmnch9wi26l0jra4784ykazimxdd4gkkqf972yk4vf"; depends=[AsioHeaders cli Rcpp rlang vctrs]; }; + ipaddress = derive2 { name="ipaddress"; version="1.0.2"; sha256="0dqxyrc2bbqbsxbzdpn9xw76gnqzjqkrzlrc203v6kd4v81npk7w"; depends=[AsioHeaders cli Rcpp rlang vctrs]; }; + ipanema = derive2 { name="ipanema"; version="0.6.5"; sha256="1bvsy5078qsv0jsyfdf6mpih2jibnqp2a8gsdi9z6gvk7vq7zpjk"; depends=[base64enc DBI dplyr httr jsonlite magrittr RMySQL]; }; ipbase = derive2 { name="ipbase"; version="0.1.1"; sha256="0adddq34pvgwf535sliy455y9mlk1qfjln8w9wjjjjlg8vi166bg"; depends=[httr jsonlite]; }; ipc = derive2 { name="ipc"; version="0.1.4"; sha256="07bl1yj1y0dd56zmqip73rvbzzciwi5lafvqfhz0zxlk6pzyqfpj"; depends=[R6 shiny txtq]; }; ipcwswitch = derive2 { name="ipcwswitch"; version="1.0.4"; sha256="12z16c8sv1nhdv70kwx1a0wh588znkv5y5r0s9kcws0n3rjhzh9p"; depends=[survival]; }; ipdw = derive2 { name="ipdw"; version="2.0-0"; sha256="0lgxassvdd8vc4fyc84rbwwgdis7h4p5psqxxyb7xznm3zdzxc7h"; depends=[gdistance raster sf]; }; ipeadatar = derive2 { name="ipeadatar"; version="0.1.6"; sha256="1j600mhvy023ry9hx8ib6wqdv4mip1cjbwzs9190v8qpc9r2a460"; depends=[curl dplyr jsonlite lubridate magrittr purrr rlang sjlabelled stringr]; }; + iperform = derive2 { name="iperform"; version="0.0.2"; sha256="0h2kp652dmwbzpq7f0hpg7fkny5hh8f57hvjs2h4p5dlm338yh27"; depends=[lubridate matrixStats]; }; ipflasso = derive2 { name="ipflasso"; version="1.1"; sha256="0gf1yj35vr92qi59hffcf4hzrh2b439kfd6m745wgpxq6wic1hs3"; depends=[glmnet survival]; }; ipfp = derive2 { name="ipfp"; version="1.0.2"; sha256="00588swwr7gz7gjx0clz55fgi4rm2h715fdmhsgm171bdmakh20r"; depends=[]; }; ipfr = derive2 { name="ipfr"; version="1.0.2"; sha256="0q44zw5g76qfqrqv6w2a8p905n4ljxab9jmyqk6fv9vs8j2kyivg"; depends=[dplyr ggplot2 magrittr mlr tidyr]; }; ipft = derive2 { name="ipft"; version="0.7.2"; sha256="0jifmkwac5yfl110200ljm3pas3321j068af9xqzqs0av20m8hps"; depends=[apcluster cluster dplyr ggplot2 Rcpp]; }; - ipkg = derive2 { name="ipkg"; version="1.0.9"; sha256="0n2p63mi6qfp0mr723cdkfsnbgykjrwzn1kyinqcydw5znwblz4x"; depends=[httr remotes]; }; + ipkg = derive2 { name="ipkg"; version="1.1.1"; sha256="118k5kc3bn3h6yih1wmi1zh8cy2qn78xh12h9b8alwiag12r3486"; depends=[httr remotes]; }; iplookupapi = derive2 { name="iplookupapi"; version="0.1.0"; sha256="1lkla7jz4jhpxb9bd1nzgr4ks5r6i0ng2dxidyv3072fxlpvih5p"; depends=[httr jsonlite]; }; iplots = derive2 { name="iplots"; version="1.1-8"; sha256="01s8a43s2spxgmp6px5dpd96p8f4sfp98nxmxk763hg2868rksx3"; depends=[png rJava]; }; ipmr = derive2 { name="ipmr"; version="0.0.7"; sha256="0zpw73bqv9gblyxaprkhb8f9dva0ivv47bjriyb3265vlzyd088c"; depends=[magrittr purrr Rcpp rlang]; }; @@ -11743,10 +11947,10 @@ in with self; { ipsecr = derive2 { name="ipsecr"; version="1.4.0"; sha256="103qifpm0bgqqkx9r67h8bgd2i8nd05k90lflvxzcb8n6vfrzicv"; depends=[BH MASS nlme Rcpp RcppArmadillo secr stringr]; }; ipsfs = derive2 { name="ipsfs"; version="1.0.0"; sha256="1cpa0m19nddpp852vyiqw0azx8idyaqv225akfyrych9y8kw9n4d"; depends=[]; }; ipumsr = derive2 { name="ipumsr"; version="0.7.0"; sha256="1sdy0gvwpa4gwaj7yzn9hbk47sai8nifrhdfdaq6rrpansjgjjv3"; depends=[dplyr haven hipread httr jsonlite lifecycle purrr R6 readr rlang tibble tidyselect xml2 zeallot]; }; - ipw = derive2 { name="ipw"; version="1.2"; sha256="12acf71pc0xxpr5h1vhx8kxjlr5kymyhld97pp4bkikw5jykfl2a"; depends=[geepack MASS nnet survival]; }; + ipw = derive2 { name="ipw"; version="1.2.1"; sha256="0xgx9l5s4w71494jfs2jfs1dhch18rb8j7jn68hilh1pzc9hz05k"; depends=[geepack MASS nnet survival]; }; ipwCoxCSV = derive2 { name="ipwCoxCSV"; version="1.0"; sha256="0avnvf4pnpxnik3iwwglpwkc8h0vsx9v6fxldkbvq7l9bphdbba1"; depends=[survival]; }; ipwErrorY = derive2 { name="ipwErrorY"; version="2.1"; sha256="14p22mwc120kdlf6r1hfx4kp7nqrz2nl2vpvy45j8rbrc571b6ka"; depends=[nleqslv]; }; - iq = derive2 { name="iq"; version="1.9.10"; sha256="0nklhggsh8z8r7s39ssw22fkiy52wwgggpx2majsi6bmyj2w3arh"; depends=[Rcpp RcppEigen]; }; + iq = derive2 { name="iq"; version="1.9.12"; sha256="0ka189anzdyfbf1gyhbsq40rsf4b85ragjg84mwfcgwk324y307c"; depends=[Rcpp RcppEigen]; }; ir = derive2 { name="ir"; version="0.2.1"; sha256="1ck5247w5lxffd2x3jrslfx13jigik48xmcnkr7my2kzjmnqiyr1"; depends=[baseline ChemoSpec dplyr ggplot2 hyperSpec lifecycle magrittr purrr Rdpack rlang signal stringr tibble tidyr units]; }; irace = derive2 { name="irace"; version="3.5"; sha256="1x0b0qr1ccq3s4d6k3z6dz94z4caxsmaywwdalw4isd7lm28d4nr"; depends=[R6]; }; iraceplot = derive2 { name="iraceplot"; version="1.2"; sha256="0891wmk7m62qr0rzxxyzz7vpmzhjllj0d36vjafcf5bf12v0yzqk"; depends=[cli dplyr DT forcats ggforce ggplot2 gridExtra irace knitr matrixStats plotly rlang rmarkdown tibble tidyr truncnorm viridisLite withr]; }; @@ -11764,7 +11968,7 @@ in with self; { irtQ = derive2 { name="irtQ"; version="0.2.0"; sha256="1728699zrzpazjs7csvlzlcz7mncxspsq3lykd3i0rrpw6cixwsn"; depends=[dplyr ggplot2 gridExtra janitor Matrix mirt purrr reshape2 Rfast rlang statmod tibble]; }; irtawsi = derive2 { name="irtawsi"; version="0.3.4"; sha256="1fxz0k9pyf1h0mv64lj8p1n5yhgmrzs5q0vq8l77sg3zd8gv66pf"; depends=[bs4Dash diagram DT gt mirt psych readxl rmarkdown shiny shinycssloaders shinyWidgets]; }; irtoys = derive2 { name="irtoys"; version="0.2.2"; sha256="1qshz6czykgf53mq6xiswzv5xsjwrkrinpfkf1yavql4v08hs82b"; depends=[ltm sm]; }; - irtpwr = derive2 { name="irtpwr"; version="1.0.2"; sha256="1h4p0w29q9ksbyjsl7wqyc5id09nicv3x3dq2li20lkqvmwlmzsh"; depends=[Deriv digest ggplot2 mirt spatstat_random]; }; + irtpwr = derive2 { name="irtpwr"; version="1.0.3"; sha256="1ak73fndvk584k26cf3h826k6ly93ai90lxh9ymlpmwww3iw83h7"; depends=[Deriv digest ggplot2 mirt spatstat_random]; }; irtrees = derive2 { name="irtrees"; version="1.0.0"; sha256="003gmnv2d0xsqd54chadkbd8c8kf8fwr4lza86k6qkfs7d3ifkjm"; depends=[DiagrammeR tidyr]; }; irtreliability = derive2 { name="irtreliability"; version="0.1-1"; sha256="15qs8bvgrwajj5kfd57rd34l1p2805ilyd7w60ngrqc14d6az9d2"; depends=[fastGHQuad ltm mirt]; }; isa2 = derive2 { name="isa2"; version="0.3.6"; sha256="0rjwnvmqmzwnch8j2zdh2b0drr76bq3c4f18h2glj44svn2dlmk2"; depends=[lattice]; }; @@ -11773,7 +11977,7 @@ in with self; { isdals = derive2 { name="isdals"; version="3.0.1"; sha256="01khfxymh708r4d9ddla6mnc4qcy76xi7l7l2y4za7lblfsmr41r"; depends=[]; }; isdparser = derive2 { name="isdparser"; version="0.4.0"; sha256="05xkffmiiyhas5hzdjdylbrvh6fjc2fjh7s00iwjxkp4ba7rwq3g"; depends=[data_table lubridate tibble]; }; isingLenzMC = derive2 { name="isingLenzMC"; version="0.2.5"; sha256="1pd1s3a1rv7vlxd5db1pgwdjps8w5im4zz2h3qzal9cwbis0hb51"; depends=[]; }; - island = derive2 { name="island"; version="0.2.9"; sha256="0s76f1i22cnc5c1dzswflq43qgcpssdkb32xc2j0ajy4r8xak7kz"; depends=[]; }; + island = derive2 { name="island"; version="0.2.10"; sha256="1g28kgayvh1l4zf504i3mziq5y04xadq603py6x2vy218vdd2gf7"; depends=[]; }; islasso = derive2 { name="islasso"; version="1.5.1"; sha256="1dq8i1b7n78nl1hnx0g80gc16ryqpf7x6mv4pz4f6n5fc24c6vx3"; depends=[glmnet Matrix]; }; ismev = derive2 { name="ismev"; version="1.42"; sha256="19giigxwf62cdkf7mglsca649n2ignb9bxyg9zl7im1vm3ngnmqd"; depends=[mgcv]; }; ismtchile = derive2 { name="ismtchile"; version="2.1.5"; sha256="0b2y5r8r0vfin10qqnym80dz7vzk49hx6ic7gsnq3kn53wqrqhgk"; depends=[dplyr stringr]; }; @@ -11790,14 +11994,14 @@ in with self; { isodistrreg = derive2 { name="isodistrreg"; version="0.1.0"; sha256="0na7jipwzr16afvz2l6wxh62mv0mrq1ma1qwxnys83zhr0dca099"; depends=[Matrix osqp Rcpp]; }; isogeochem = derive2 { name="isogeochem"; version="1.1.1"; sha256="112pcgbafjkgbfdkqvgz5i5iscfkjasq88k58az50cf47bqsqg0g"; depends=[]; }; isokernel = derive2 { name="isokernel"; version="0.1.0"; sha256="04mrbq2822yhcq4q82xwm61a38zsk6w55jgjkp0xnardpv8a39pb"; depends=[Matrix RANN]; }; - isoorbi = derive2 { name="isoorbi"; version="1.1.0"; sha256="0f098y43iiwyf6gv1gaq9r22gwk9lbki86vj0pqrvgcdyk4w6azj"; depends=[dplyr lifecycle readr rlang tidyr tidyselect]; }; - isopam = derive2 { name="isopam"; version="1.2.0"; sha256="1ygvpdpn1vjkpfl32sp41kss512r051c839yki288xidqg4j3z0a"; depends=[cluster future future_apply progressr proxy vegan]; }; + isoorbi = derive2 { name="isoorbi"; version="1.3.0"; sha256="1n0mga4djak8qsfjjaaqd2wfw842qp4vqfq3n3lrimlrn8l52l0j"; depends=[dplyr ggplot2 lifecycle openxlsx purrr readr rlang scales tidyr tidyselect]; }; + isopam = derive2 { name="isopam"; version="1.3.0"; sha256="0mq4206v7bmcbms0bpijvfshi97zbsj3kjr0z88cpzhd1w4yv80p"; depends=[cluster future future_apply progressr proxy vegan]; }; isopat = derive2 { name="isopat"; version="1.0"; sha256="0fznvgycyd35dh7pbq1xhp667gsficlmycn5pcrqcbs89069xr1s"; depends=[]; }; - isopleuros = derive2 { name="isopleuros"; version="1.0.0"; sha256="19hn9ydby2wi6aim6vb7wjj93f95md0g8sy41djlhr94m5v9xw3d"; depends=[]; }; + isopleuros = derive2 { name="isopleuros"; version="1.2.0"; sha256="1vqazdpg8whpx5nw8gq8bchh93dl04xmygs9as1k5yx1sijw164j"; depends=[]; }; isotone = derive2 { name="isotone"; version="1.1-1"; sha256="0kpzcfxac3yrvw4rszzc99r1mw78pq6bsgg0h332jamwvffhasgn"; depends=[nnls]; }; isotonic_pen = derive2 { name="isotonic.pen"; version="1.0"; sha256="1lgw15df08f4dhrjjfr0jqkcvxwad92kflj2px526pcxwkj7cj3i"; depends=[coneproj Matrix]; }; isotracer = derive2 { name="isotracer"; version="1.1.5"; sha256="0qxdri6dq920d39ip1f37h1nzw90fr51bq4xc1m5bjv7vkqrqbks"; depends=[BH coda data_table dplyr latex2exp magrittr pillar purrr Rcpp RcppEigen RcppParallel rlang rstan rstantools StanHeaders tibble tidyr tidyselect]; }; - isotree = derive2 { name="isotree"; version="0.5.22"; sha256="1y274hjhxf0jhhmycjd0p4vwlxsqbwnminqdh3qb61jxlz0r74vr"; depends=[Rcpp]; }; + isotree = derive2 { name="isotree"; version="0.5.24-3"; sha256="02cnk9y8kc5zc9jzzhhxhgqi2z19yj2glvylbmydiagwli1aqvfl"; depends=[Rcpp]; }; ispd = derive2 { name="ispd"; version="0.2"; sha256="06h4z342d17rkpr2wwck4sq79kprdq6fgqf10jg8cs1f52q6pq0h"; depends=[ibd]; }; ispdata = derive2 { name="ispdata"; version="1.1.2"; sha256="16vzfwn4q1q0k1m01ibknwm37j2d4x63a3zrrqj25mq8nrg134bs"; depends=[curl dplyr janitor openxlsx readr sf]; }; istacr = derive2 { name="istacr"; version="0.2.2"; sha256="1hg94p0b5zkj50ckxrgas2a8rdwh0avspykscincxkfi0wk1cx0r"; depends=[jsonlite]; }; @@ -11814,8 +12018,8 @@ in with self; { iterpc = derive2 { name="iterpc"; version="0.4.2"; sha256="06q7l8mz8ws4nn6gb0whnlqs8my2n8z2d2g8fvv3cxd28904dg9q"; depends=[arrangements gmp iterators]; }; itertools = derive2 { name="itertools"; version="0.1-3"; sha256="1ls5biiva10pb1dj3ph4griykb9vam02hkrdmlr5a5wf660hg6xn"; depends=[iterators]; }; itertools2 = derive2 { name="itertools2"; version="0.1.1"; sha256="0yra3x9ddvn5pp3jibm69205zazv81bz0cflw4mdvxpqadaf9f96"; depends=[iterators]; }; - itol_toolkit = derive2 { name="itol.toolkit"; version="1.1.5"; sha256="0akmjzp65vsl8hnh195lhm58f0qs1c3vy8ljd6njmq2f9fvjgxpj"; depends=[ape Biostrings colourpicker data_table dplyr ggsci miniUI purrr RColorBrewer rstudioapi seqinr shiny stringr tidyr wesanderson]; }; - itp = derive2 { name="itp"; version="1.2.0"; sha256="0vh5rpl88v5b6s2vfv42ahaphlspiapx82xa74ynic4rmc2ffjis"; depends=[Rcpp]; }; + itol_toolkit = derive2 { name="itol.toolkit"; version="1.1.7"; sha256="0p29p8qk03aqcmxdskrf2mjms1isffwwxgh1kr38fxi43f3kc9q0"; depends=[ape colourpicker data_table dplyr ggsci miniUI purrr RColorBrewer rstudioapi seqinr shiny stringr tidyr wesanderson]; }; + itp = derive2 { name="itp"; version="1.2.1"; sha256="0nj497zmdgh6y5npf7727gqn9f9pm5rv9bm0xfn8419lb9n3ann3"; depends=[Rcpp]; }; itraxR = derive2 { name="itraxR"; version="1.12.1"; sha256="0s3arm3ln2p92by8lfj5fl1rh7cspj9v2q30rb4r99vncxp85alk"; depends=[broom compositions dplyr ggcorrplot ggplot2 janitor munsellinterpol readr rlang stringr tibble tidyr tiff]; }; its_analysis = derive2 { name="its.analysis"; version="1.6.0"; sha256="1ig7yq59y5xl1z182bbvgx8vsqs9sb1xscf6zxqn1qmy9f0ggf7v"; depends=[boot car forecast ggplot2 plyr]; }; itsadug = derive2 { name="itsadug"; version="2.4.1"; sha256="1sdqs279qxr3993hw08xg7b54yq03jw1597cqn6cf24sh9vpw9m1"; depends=[mgcv plotfunctions]; }; @@ -11831,9 +12035,9 @@ in with self; { ivitr = derive2 { name="ivitr"; version="0.1.0"; sha256="0fc5svmkxv0s20ipwbvkvmmh1w5gb1g6va496fa9qbf99wifnmrx"; depends=[dplyr nnet randomForest rlang]; }; ivmodel = derive2 { name="ivmodel"; version="1.9.1"; sha256="1glm4nwlzyzwbv3nbi23qslnnqf47ps7iyd3wbr1bfdln0sr2s0l"; depends=[Formula ggplot2 Matrix reshape2]; }; ivmte = derive2 { name="ivmte"; version="1.4.0"; sha256="1bwvkw04pn4mf7iyfvaiabgx0qd83si13sr9jpqim9zqqhf1c1dc"; depends=[Formula]; }; + ivo_table = derive2 { name="ivo.table"; version="0.2"; sha256="00a4n48cm98c9a7fw4lbq4iirniynpdvfn8f9y2blrgnvq48nfrg"; depends=[checkmate dplyr flextable officer openxlsx purrr stringr tidyr]; }; ivprobit = derive2 { name="ivprobit"; version="1.1"; sha256="05b5gf5gmi2yrkg61n7w12qlgpnjakd1z8hhqxy6py8hahsf84gm"; depends=[Formula]; }; ivreg = derive2 { name="ivreg"; version="0.6-2"; sha256="15iqj8rzmb1hybvnw8h6v321sj4pv7bg67nfk8g9bpzyds3zm9xl"; depends=[car Formula lmtest MASS]; }; - ivregEX = derive2 { name="ivregEX"; version="1.0"; sha256="0zh3rqvhn8ald6lxv9kywy2v1p0nr9ijv6plhpbxc6k51zzsgyl8"; depends=[AER Formula lmtest sandwich]; }; ivs = derive2 { name="ivs"; version="0.2.0"; sha256="06gjlmqqwlp86l708lk36vnxj83r082mbcccvp3x6g0apiy8ak98"; depends=[glue lifecycle rlang vctrs]; }; ivsacim = derive2 { name="ivsacim"; version="2.1.0"; sha256="0pldg086kaaqc2wab1m61anabqaf0mffv1hsb8plz1qn2f8gdcp3"; depends=[Rcpp RcppArmadillo]; }; ivtools = derive2 { name="ivtools"; version="2.3.0"; sha256="1wv0r9dy893hafbbrjcjrphb8dgql71ya4zfbkl5dfp7d4ncfxl0"; depends=[ahaz data_table nleqslv numDeriv Rcpp survival]; }; @@ -11842,21 +12046,21 @@ in with self; { izmir = derive2 { name="izmir"; version="0.1.0"; sha256="1kkzia7470gsi3yhb1rak493vz965v5v5aj3cq4ginhjd7y0glfz"; depends=[dplyr jsonlite magrittr openxlsx readr rvest stringr]; }; jSDM = derive2 { name="jSDM"; version="0.2.6"; sha256="1rqy6xh6qhvmfgjnjlbkq71dr6c0fdwddvs7cbvv1p5qvf12zhx9"; depends=[coda corrplot doParallel foreach MASS Rcpp RcppArmadillo RcppGSL stringi]; }; jScore = derive2 { name="jScore"; version="0.1.0"; sha256="0hb63l10cwvpvix155d16v35lp1v88lp69f6q1s09njc6qdsg212"; depends=[]; }; - jaatha = derive2 { name="jaatha"; version="3.2.4"; sha256="13vmmrbvr073mmhgh84dp2wwx3r71bnli90nycfliqfnmzwr8ynl"; depends=[assertthat R6]; }; + jaatha = derive2 { name="jaatha"; version="3.2.5"; sha256="0npqpb6p4ap64mn5x2y424ayz1gy9s2b1ls4f4bs9l9mhr60z4jy"; depends=[assertthat R6]; }; jab_adverse_reactions = derive2 { name="jab.adverse.reactions"; version="1.0.3"; sha256="18rfaiv2w7lvd5psj6qkyfdc363y3xfrrg5fhmcv4s4n0cj8kbsv"; depends=[]; }; jaccard = derive2 { name="jaccard"; version="0.1.0"; sha256="1dmla6qc1k8iw2d7zfjqhf13gqd2lpsrj09yh47ljf994fpab936"; depends=[dplyr magrittr qvalue Rcpp]; }; jack = derive2 { name="jack"; version="5.3.0"; sha256="0qxshhyrplq5bfgb1spjfh7iwazbjna5hv2rkn6fwbrpgvbc9jrg"; depends=[BH DescTools gmp multicool mvp partitions qspray Rcpp spray]; }; - jackalope = derive2 { name="jackalope"; version="1.1.4"; sha256="0bdv3hj7zaa3jxg1rshzgg7y93802kr1nfhh0hg1zgawn1hrpyki"; depends=[ape R6 Rcpp RcppArmadillo RcppProgress Rhtslib zlibbioc]; }; + jackalope = derive2 { name="jackalope"; version="1.1.5"; sha256="18k130d95k0zd7f88gbh0gnjmc41kyii82phslmrhyigrizhjq82"; depends=[ape R6 Rcpp RcppArmadillo RcppProgress Rhtslib zlibbioc]; }; jackknifeKME = derive2 { name="jackknifeKME"; version="1.2"; sha256="0c5shl6s46kz7a623gccqk2plrrf2g29nwr6vbny6009pq3jvzam"; depends=[imputeYn]; }; jackknifeR = derive2 { name="jackknifeR"; version="1.2.0"; sha256="0s2kf0r102gwcrjd2ggimyxw99nwcdd0pfwgyw922f2kzwf0rxq6"; depends=[doParallel foreach]; }; jackstrap = derive2 { name="jackstrap"; version="0.1.0"; sha256="09y9pgb920lnbzlgm6j188q8lw1air83kx383a2f89zz7hhgg7jr"; depends=[Benchmarking doParallel dplyr fBasics foreach ggplot2 plyr reshape rlang scales tidyr]; }; jackstraw = derive2 { name="jackstraw"; version="1.3.8"; sha256="04d0ribg8nbxazv92hmzzks2krsx024glfc90cm9dxz7if44cwc9"; depends=[cluster ClusterR corpcor irlba qvalue rsvd]; }; - jacobi = derive2 { name="jacobi"; version="3.0.0"; sha256="13a7jnfmjk1ssdawipk2gcvmr5bj8bl30miab456nhg89r52nqj5"; depends=[Carlson Rcpp rgl Rvcg]; }; + jacobi = derive2 { name="jacobi"; version="3.1.1"; sha256="1i2v5sgwlbihavrj46g4mkni2b8p6qb7alrnaab30c8lwblsc8g8"; depends=[Carlson Rcpp rgl Rvcg]; }; jacpop = derive2 { name="jacpop"; version="0.6"; sha256="0kq6rn33civ2g6i5nwfqvcgmnn5k2dwmw60lkmz4ywm0y4xxlkai"; depends=[]; }; jadeLizardOptions = derive2 { name="jadeLizardOptions"; version="1.0.1"; sha256="1919qm9b5nb6bjwbqhsnimgn5lhcrrhd90ndnsc9kj3z3khw9mkd"; depends=[dplyr ggplot2 magrittr tibble]; }; jaggR = derive2 { name="jaggR"; version="0.1.1"; sha256="0qd4kwcc8zcvg2p1njcv7z4y5ssg77zsylph5bcaqdjxq996q7rv"; depends=[formatR glue]; }; jagsUI = derive2 { name="jagsUI"; version="1.5.2"; sha256="1ig2v5k1xjggh694azr96cv80qapq8al7dhsjhvkx0dihp8kgad2"; depends=[coda rjags]; }; - jagshelper = derive2 { name="jagshelper"; version="0.1.11"; sha256="0n8jzzqy4zpzqx461dkma5sg4hvdr15hz2xg1jy7dhf6gz4yljls"; depends=[jagsUI MASS]; }; + jagshelper = derive2 { name="jagshelper"; version="0.2.0"; sha256="0xncq9hvalswra687wpm6jzf1iv4fxay7mr1935qs9gcrdy4vi8h"; depends=[jagsUI MASS]; }; jagstargets = derive2 { name="jagstargets"; version="1.1.0"; sha256="12iiqma5b114rnbcknid0qhhc1wr5hm4p2hg8d0bmxhsxnr9hfkr"; depends=[coda digest fst posterior purrr qs R2jags rjags rlang tarchetypes targets tibble withr]; }; jalcal = derive2 { name="jalcal"; version="0.1.0"; sha256="19smqrhvab8f2xb8pa8x6gmvr0r2lwvqisfahixs7aa8lxi708jw"; depends=[]; }; janeaustenr = derive2 { name="janeaustenr"; version="1.0.0"; sha256="1ap8p1lpbj2wz90mpf1vbyzhv2spzv03bi8lwzpsir2y77hjxhxl"; depends=[]; }; @@ -11874,16 +12078,15 @@ in with self; { jetset = derive2 { name="jetset"; version="3.4.0"; sha256="0c99h5npsv2gf5d59s4qhkaqmjhbwa3prcykk24wzhnpfq6y6xhp"; depends=[AnnotationDbi org_Hs_eg_db]; }; jewel = derive2 { name="jewel"; version="2.0.1"; sha256="0lj97bgqd2q3s2dcksn1nv4wwiw4ik9aimwa7kamfl0lmrlcz165"; depends=[igraph MASS Matrix matrixcalc purrr SMUT]; }; jfa = derive2 { name="jfa"; version="0.7.0"; sha256="156pg721prpy8rvahpczrfwihx1wj1qihqzhgal8kj91259ccj57"; depends=[bde BH extraDistr ggplot2 Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders truncdist]; }; - jgcricolors = derive2 { name="jgcricolors"; version="1.0.0"; sha256="1lg6yzqly5y2cf396b6rvfqplnfyz9v9ay2g4q9m110mng5ln96l"; depends=[ggplot2 knitr markdown RColorBrewer stringr]; }; - jgsbook = derive2 { name="jgsbook"; version="1.0.2"; sha256="0q2k2fff6qzn9mgf629arpc055xjhych0bj412kq9yp68kgmzr46"; depends=[curl httr jsonlite statip]; }; + jgsbook = derive2 { name="jgsbook"; version="1.0.4"; sha256="14rjs7ja2aj6rrq1xfv4r8zisnw4mkxiiwr7l8x7cai484adfqbf"; depends=[curl httr jsonlite statip]; }; jiebaR = derive2 { name="jiebaR"; version="0.11"; sha256="08v64xwr9jp4vh88x7y935khh4cmj8rwsjaxfd2c67n0445qppmd"; depends=[jiebaRD Rcpp]; }; jiebaRD = derive2 { name="jiebaRD"; version="0.1"; sha256="1wadpcdca4pm56r8q22y4axmqdbb2dazsh2vlhjy73rpymqfcph4"; depends=[]; }; - jinjar = derive2 { name="jinjar"; version="0.3.0"; sha256="10lilj98ppy3cpimn5pzsfkvm5chz4bw1rx3a3frgy56nmapnmsv"; depends=[cli cpp11 fs jsonlite rlang]; }; + jinjar = derive2 { name="jinjar"; version="0.3.1"; sha256="0d65a85pain2h642h4dd7sry58jkn2rkmaavzwiixp63j0gmixn8"; depends=[cli cpp11 fs jsonlite rlang]; }; jipApprox = derive2 { name="jipApprox"; version="0.1.5"; sha256="0pi85gl0knyi5r32bdmy2x0w805kczs41nx3r45bq0zs66g14fix"; depends=[sampling]; }; jjb = derive2 { name="jjb"; version="0.1.1"; sha256="0y9yvnzg6xngz1fvzl5jm4yb1pg6wrp3id0gysv214wcznf3gna9"; depends=[]; }; jlctree = derive2 { name="jlctree"; version="0.0.2"; sha256="0l8piz0m9iv9lbw35yx1ww0db0pv0qhbvkz4l36fwjsgnjlh8f6a"; depends=[lme4 rpart survival]; }; jlmerclusterperm = derive2 { name="jlmerclusterperm"; version="1.1.0"; sha256="0qymlx8b1038znadwam9jhcp8h94g7gyqfzmarz49hps8ssfgiqp"; depends=[backports cli generics JuliaConnectoR lme4]; }; - jmBIG = derive2 { name="jmBIG"; version="0.1.0"; sha256="129b39ax1flw9d4aar0v6640axm934myipag524vh5dfzc2dsrdr"; depends=[dplyr FastJM JMbayes2 joineRML nlme rstanarm survival]; }; + jmBIG = derive2 { name="jmBIG"; version="0.1.1"; sha256="0fijdgw5nkk1lwbjj3hq04lgi1irwk4k62qhgqznlc8byzzpzh5s"; depends=[dplyr FastJM JMbayes2 joineRML nlme rstanarm survival]; }; jmastats = derive2 { name="jmastats"; version="0.2.0"; sha256="1x9x9wpmjjaxq4rk9m6mlkydpmsxc9y68cqnp4viajghhjmabvqz"; depends=[cli crayon dplyr forcats ggplot2 lifecycle lubridate purrr rappdirs readr rlang rvest sf stringr tibble tidyr tidyselect units xml2]; }; jmatrix = derive2 { name="jmatrix"; version="1.5"; sha256="1kcz2zvi044aqp9v057x686jbmirc3p2s995vrb0cym1jvw53crh"; depends=[memuse Rcpp]; }; jmcm = derive2 { name="jmcm"; version="0.2.4"; sha256="1dpm94k2s2vx3dvd5rk7xrsq786phl0hq7xi9fjjxbr8qfmxhsck"; depends=[Formula Rcpp RcppArmadillo roptim]; }; @@ -11892,7 +12095,7 @@ in with self; { jmotif = derive2 { name="jmotif"; version="1.1.1"; sha256="0b2qllpfgs6q5fwfhxl5b4xdyzbvnja7ld766akf0xxznxvglkrg"; depends=[Rcpp RcppArmadillo]; }; jmuOutlier = derive2 { name="jmuOutlier"; version="2.2"; sha256="1vj9n1hsf780f7l0a22kmi3qm84j4dzjybjkh5zwh6bhwfjnjws3"; depends=[]; }; jmv = derive2 { name="jmv"; version="2.4.11"; sha256="02iaasl3crg924y3dipv7pjq67nj9lf2i2j53pa4ccwz22nrpsbw"; depends=[afex BayesFactor car dplyr emmeans GGally ggplot2 ggrepel ggridges GPArotation jmvcore lavaan magrittr MASS multcomp mvnormtest nnet PMCMR psych R6 ROCR vcd vcdExtra]; }; - jmvReadWrite = derive2 { name="jmvReadWrite"; version="0.4.1"; sha256="1s7ps4xam6xp161ds6l1dq37kbxha2wvydfzh7d34hrhk0zfwigd"; depends=[jsonlite zip]; }; + jmvReadWrite = derive2 { name="jmvReadWrite"; version="0.4.2"; sha256="1anvbgwwgpn0ksiywzfg5qmhq5vnb4q7drrl02awa89fs2bnzxba"; depends=[jsonlite zip]; }; jmvconnect = derive2 { name="jmvconnect"; version="2.3.13"; sha256="0b5klfn4986haw3hhy3aarf88g08s1d46b8xrpxxqnwqw8yd7l88"; depends=[BH evaluate httr jmvcore rappdirs Rcpp]; }; jmvcore = derive2 { name="jmvcore"; version="2.4.7"; sha256="1pzcv5rkkhff73cf9kfp56d5frk5vjjj6ls1cd4bskyrm0754p3a"; depends=[base64enc jsonlite R6 rlang stringi]; }; job = derive2 { name="job"; version="0.3.0"; sha256="0d7pw3q5lqlgmav1vx63y8l6gdav96656bg378wj001rx5gx052h"; depends=[digest rstudioapi]; }; @@ -11922,7 +12125,7 @@ in with self; { jpmesh = derive2 { name="jpmesh"; version="2.1.0"; sha256="0q8adf582h92qwdwgh4dk53s8rixrrh96r8vzy6bwxvizqf0i3y8"; depends=[leaflet magrittr memoise miniUI purrr rlang sf shiny tibble units vctrs]; }; jpstat = derive2 { name="jpstat"; version="0.4.0"; sha256="1vzqipxk019f9chm9nxcsifiv3i2cmqvwgyx45zrh2cxsrn8bhvk"; depends=[dplyr httr lifecycle navigatr pillar purrr rlang stickyr stringr tibble tidyr vctrs]; }; jqbr = derive2 { name="jqbr"; version="1.0.3"; sha256="1afraa18zwv3lbgxpqj4zkvlhzmv5ziajww1iccpkr7ca1rn4zk3"; depends=[htmltools jsonlite shiny]; }; - jqr = derive2 { name="jqr"; version="1.3.1"; sha256="0dlz9wwkgz06mnnmwaq4pr68x7zywp2iczfw0bjpzrgpbzkn2972"; depends=[lazyeval magrittr]; }; + jqr = derive2 { name="jqr"; version="1.3.3"; sha256="1w6806yx763xb0xaqh8ms20gz4h1y3c2s11lgsq3x8h6bahimn5s"; depends=[lazyeval magrittr]; }; jquerylib = derive2 { name="jquerylib"; version="0.1.4"; sha256="04a40v4znpj98j7y6009d74a6g9dchj5rr3p08cgz9p3rlfw3g7h"; depends=[htmltools]; }; jrSiCKLSNMF = derive2 { name="jrSiCKLSNMF"; version="1.2.1"; sha256="1ai3maxl1gmgr9bvc813xnfz5lk9kgzm6a46p8iidjpnv5p42c4v"; depends=[cluster clValid data_table factoextra foreach ggplot2 igraph irlba kknn MASS Matrix pbapply Rcpp RcppArmadillo RcppProgress Rdpack rlang scran umap]; }; jrc = derive2 { name="jrc"; version="0.6.0"; sha256="0zqif6csh4r5vbcw1dl12x2psb27r5lv0k5z0vv8bk3xk5r6vwlq"; depends=[httpuv jsonlite mime R_utils R6 stringi stringr]; }; @@ -11931,22 +12134,22 @@ in with self; { jrvFinance = derive2 { name="jrvFinance"; version="1.4.3"; sha256="0g3w65avys5chni0zlahzwqgv09z9na08yhay385ax33ddwrcrjv"; depends=[]; }; js = derive2 { name="js"; version="1.2"; sha256="0s5rj845255a4fzv4h76gcnnqyl5cg3c03r2ay3f00jxnxvvigcg"; depends=[V8]; }; jsTree = derive2 { name="jsTree"; version="1.2"; sha256="06mmz55brm6w19vnlk1w8qaz0n3czlyl4fs62nzgdlsdjn8pad1h"; depends=[data_table htmltools htmlwidgets jsonlite]; }; - jsTreeR = derive2 { name="jsTreeR"; version="2.3.3"; sha256="1xlvd3npdcg63pisrgbg65di01w1h8hksbqndj0crn3jbhy7qjyd"; depends=[base64enc fontawesome htmltools htmlwidgets jquerylib miniUI R_utils rstudioapi shiny shinyAce]; }; + jsTreeR = derive2 { name="jsTreeR"; version="2.5.0"; sha256="0qkywv3var6ash1vsl684pjhwrn7hmw3nl6i5kcqvb7xijs20cwp"; depends=[base64enc fontawesome htmltools htmlwidgets jquerylib miniUI R_utils rstudioapi shiny shinyAce]; }; jshintr = derive2 { name="jshintr"; version="0.1.0"; sha256="08j28c2ab9fh6g7qp2vl8j5hz5kkikvl2id979kv92ach9vranyd"; depends=[htmltools htmlwidgets rstudioapi]; }; jskm = derive2 { name="jskm"; version="0.5.2"; sha256="059hyagi20saqwdwhpaz8ra8yf5y4ihz974285sr15skgr7y1kv2"; depends=[ggplot2 ggpubr scales survey survival]; }; - jsmodule = derive2 { name="jsmodule"; version="1.4.3"; sha256="1wjs01dg0k47jnb5f03w2ryns9b57v73pzh4bx576qpl2fgzvzbb"; depends=[data_table DT epiDisplay geepack GGally ggplot2 ggpubr haven Hmisc jskm jstable labelled MatchIt maxstat officer pROC purrr RColorBrewer readr readxl rstudioapi rvg see shiny shinycustomloader shinyWidgets survey survIDINRI survival timeROC]; }; + jsmodule = derive2 { name="jsmodule"; version="1.4.4"; sha256="0v93667slfc84shnfzv3622xnzgz6jhh74h9kd16wnma949gqw4f"; depends=[data_table DT epiDisplay geepack GGally ggplot2 ggpubr haven Hmisc jskm jstable labelled MatchIt maxstat officer pROC purrr RColorBrewer readr readxl rstudioapi rvg see shiny shinycustomloader shinyWidgets survey survIDINRI survival timeROC]; }; json2aRgs = derive2 { name="json2aRgs"; version="0.3.0"; sha256="0n1kj1kll6x7ar00y32pf8z38z7z1bnj29nlv9dx068n4kmy89v7"; depends=[jsonlite yaml]; }; json64 = derive2 { name="json64"; version="0.1.3"; sha256="19q8qgf4wnd3np12ajy180klpjy0g2csw5micwb4sl7qfzl6wc7j"; depends=[jsonlite]; }; jsonNormalize = derive2 { name="jsonNormalize"; version="1.0.0"; sha256="1szvi8c0r75jv7y2y1jsampb783svvx04x4rvyw8v9qkiw0qpfis"; depends=[rstudioapi V8]; }; jsonStrings = derive2 { name="jsonStrings"; version="2.1.1"; sha256="0936nhm6zx4la7i6fwigz0kvgf9dirz422vhrzjr45f37pyfvkxy"; depends=[R6 Rcpp]; }; jsonify = derive2 { name="jsonify"; version="1.2.2"; sha256="0bxgyj5b1hnijq5315g050giixy4k5mjz2zdx8yil0igb5ifji9p"; depends=[rapidjsonr Rcpp]; }; jsonld = derive2 { name="jsonld"; version="2.2"; sha256="0bplz2s97wl9yp383jazykh5647iw6kbr1zanqai2s0sxp1xbwn8"; depends=[curl jsonlite V8]; }; - jsonlite = derive2 { name="jsonlite"; version="1.8.7"; sha256="07301wdpf014m8pfr7x3zwaj07pmin0rfax0irljimvj9dwbfhkx"; depends=[]; }; + jsonlite = derive2 { name="jsonlite"; version="1.8.8"; sha256="196an37f118qw43vyfaygh01dirh3hyz84ix8bbs6fsck0b17qkx"; depends=[]; }; jsonstat = derive2 { name="jsonstat"; version="0.0.2"; sha256="0p0d3snl1971p5ikrkmwqrjjh4fy0b89qk3rnd1dayfb0r80xnnj"; depends=[cli dplyr jsonlite rlang]; }; jsonvalidate = derive2 { name="jsonvalidate"; version="1.3.2"; sha256="0myvm93azl6mj60l8fp91qa3ln3nnwj4p48xli8k215sm6zhhv1b"; depends=[V8]; }; - jstable = derive2 { name="jstable"; version="1.1.2"; sha256="1ar9zp9adag6d806l79y5pnf44hqdd4wrrcx7nvglxdyn7ma9xp9"; depends=[coxme data_table dplyr geepack labelled lme4 magrittr purrr survey survival tableone tibble]; }; + jstable = derive2 { name="jstable"; version="1.1.3"; sha256="0vfm6c41xy38b212fqha7v8668q6v5964sdvh6jxs7nc279lfr6w"; depends=[coxme data_table dplyr geepack labelled lme4 magrittr purrr survey survival tableone tibble]; }; jstor = derive2 { name="jstor"; version="0.3.11"; sha256="1n5l6wz93bjhhhpikmvmjd5famxbrsk3d6z61bb7sp6xvslychlj"; depends=[cli crayon dplyr furrr magrittr pryr purrr readr rlang stringr tibble tidyr xml2]; }; - jtdm = derive2 { name="jtdm"; version="0.1-1"; sha256="11x4zm5npgcbmvrir2maf7zr54mvg0ppckb145cckmqns94nk25j"; depends=[ggforce ggplot2 gridExtra mniw mvtnorm reshape2]; }; + jtdm = derive2 { name="jtdm"; version="0.1-2"; sha256="034hajlqz7mypnia77nm1fihhc5sjwaxvrk83qj1miqd5yilygvx"; depends=[ggforce ggplot2 gridExtra mniw mvtnorm reshape2]; }; jti = derive2 { name="jti"; version="0.8.4"; sha256="0jxqv3xa9yyzizx1rhxjv65c8b253shridy57skrd5kya701n460"; depends=[igraph Rcpp RcppArmadillo sparta]; }; jtools = derive2 { name="jtools"; version="2.2.2"; sha256="1fcpsh9kdr83ngxab6y9b00ridsz764qj3rdlc3dcmqbgas6m8vr"; depends=[crayon generics ggplot2 magrittr pander pkgconfig rlang tibble]; }; jubilee = derive2 { name="jubilee"; version="0.3.3"; sha256="1j2y44pfx9z2k169lh42b4dnfrrnk8jqsjn3wz4l9iscr6r91lx7"; depends=[data_table dplyr readxl xts yaml zoo]; }; @@ -11965,7 +12168,7 @@ in with self; { kableExtra = derive2 { name="kableExtra"; version="1.3.4"; sha256="1c5vzy95cbz36jwyssr927qicrayifinv861rvnmg4nghb1gl7q9"; depends=[digest glue htmltools knitr magrittr rmarkdown rstudioapi rvest scales stringr svglite viridisLite webshot xml2]; }; kader = derive2 { name="kader"; version="0.0.8"; sha256="15f2swgngw5rdjdsh5kd55wm2nivlfs8pv4mdn0b75qihwgg1zkk"; depends=[]; }; kaigiroku = derive2 { name="kaigiroku"; version="0.5"; sha256="11f9lxk4kx3d65i2xnbpw1ixcc9qgahqdirl42aiyph4hzah1fhh"; depends=[dplyr jsonlite R_utils tidyr]; }; - kairos = derive2 { name="kairos"; version="2.0.1"; sha256="1qb5vrvn1sf4ah2krsnhw1885w90zr2xwvgzb785mhg2mhq9sncs"; depends=[aion arkhe dimensio extraDistr]; }; + kairos = derive2 { name="kairos"; version="2.0.2"; sha256="0ywn90d7bn159zvlmp70yf9gbkcb9s3gmx180zp0kc6mw43jxp6v"; depends=[aion arkhe dimensio extraDistr]; }; kalmanfilter = derive2 { name="kalmanfilter"; version="2.0.2"; sha256="0kxc9lwjdan5q1xikagfmwbbxxjqvqjcs1hq6514j8av0lrn6hpq"; depends=[Rcpp RcppArmadillo]; }; kamila = derive2 { name="kamila"; version="0.1.2"; sha256="01rwalv2qigxl3j3jyhrdbxlarwf0xdc8xa6c42sgcl6qpna5vn7"; depends=[abind gtools KernSmooth plyr Rcpp]; }; kangar00 = derive2 { name="kangar00"; version="1.4.1"; sha256="0c3wrzk7k322xj0yzladxdhh2j91qm7m0dyqqqfsshfkh8d22m48"; depends=[bigmemory biomaRt CompQuadForm data_table igraph KEGGgraph lattice sqldf]; }; @@ -11974,14 +12177,15 @@ in with self; { kaos = derive2 { name="kaos"; version="0.1.2"; sha256="0hzzb8ldydl4g3cl1579q8jv835q4cdmn8agafp6qqdhwi1xxw8k"; depends=[ggplot2 reshape2]; }; kaphom = derive2 { name="kaphom"; version="0.3"; sha256="081drgckirc0wv2viyhhnabrlfzi0nkpq6pffw2rxfjyxdsyvnwa"; depends=[]; }; kappaSize = derive2 { name="kappaSize"; version="1.2"; sha256="0lrcyj85zcl73m6bhbzl6rkprrfpfwmm4amyjkg1xsasy5zlwk67"; depends=[]; }; - kappalab = derive2 { name="kappalab"; version="0.4-10"; sha256="14yxfkagjmvg1z0vsdx64lngcr02sqpbbgpqy2ww02wvwnn9hpg9"; depends=[kernlab lpSolve quadprog]; }; + kappalab = derive2 { name="kappalab"; version="0.4-12"; sha256="130k24wzan7slgvfld3yi12x8h9ybvwddfzdcvj3xvn7ijhjj25k"; depends=[kernlab lpSolve quadprog]; }; karaoke = derive2 { name="karaoke"; version="1.0"; sha256="1kx11lijdffhhh8prjgsamshgg2v29b2i129fjqi079waa335352"; depends=[seewave tuneR]; }; karel = derive2 { name="karel"; version="0.1.1"; sha256="0nvzvd8aq0sipcvn8agjjd2k1wykpgc99nrrk2cxrlvsjbpd2w52"; depends=[dplyr gganimate ggplot2 gifski magrittr purrr tidyr]; }; karyotapR = derive2 { name="karyotapR"; version="1.0.1"; sha256="01mxsv4ky6d16xjkvi6lc2cfvrdll6whyizxf500m8ds9bdlmqha"; depends=[circlize cli ComplexHeatmap dbscan dplyr fitdistrplus GenomicRanges ggplot2 gtools IRanges magrittr purrr rhdf5 rlang S4Vectors SingleCellExperiment SummarizedExperiment tibble tidyr umap viridisLite]; }; katex = derive2 { name="katex"; version="1.4.1"; sha256="18cziglz8qy1v9gfcjiixq2d3l3na5p51zrxpy3x8asjiddq13d3"; depends=[V8]; }; kayadata = derive2 { name="kayadata"; version="1.3.0"; sha256="1fq8yaiis38avmnklq2g17sz1aphplraqgw40q5zfs1kdvhr39gp"; depends=[dplyr forcats ggplot2 magrittr purrr scales stringr tidyr]; }; kazaam = derive2 { name="kazaam"; version="0.1-0"; sha256="0j7vysnmiv9sggcxdn3nrgfvyl52pza4kkjnsa0xlb3fzq9qpwlz"; depends=[pbdMPI]; }; - kcpRS = derive2 { name="kcpRS"; version="1.1.0"; sha256="0ijhzzzqk3yxpdm4vb1h7igrpb3wli17kxbidx4kzjga54pbik41"; depends=[doParallel foreach RColorBrewer Rcpp roll]; }; + kcmeans = derive2 { name="kcmeans"; version="0.1.0"; sha256="0aqh0g9sa9jigwy6yl0ianlnky6sjs7v65wv77xb0zdifsyyq6bh"; depends=[Ckmeans_1d_dp MASS Matrix]; }; + kcpRS = derive2 { name="kcpRS"; version="1.1.1"; sha256="0drqw521bi2fnlapjd7hhir6vcy2aqz8jj35qdygnjkj1p3701c7"; depends=[doParallel foreach RColorBrewer Rcpp roll]; }; kde1d = derive2 { name="kde1d"; version="1.0.5"; sha256="0s14dw0l6869a7zasda7hkdwqky6kbrxzbqhxvg1jy2a75mbgymm"; depends=[BH randtoolbox Rcpp RcppEigen]; }; kdecopula = derive2 { name="kdecopula"; version="0.9.2"; sha256="0g5c12wm3byd4chd8i9mxv599gsf4ip4qghx83j3mmhsmn05zf4y"; depends=[lattice locfit qrng quadprog Rcpp RcppArmadillo]; }; kdensity = derive2 { name="kdensity"; version="1.1.0"; sha256="07d1p3ysdm66a9sf0gih5xjb3wfab44c3sr8aaraz22s2a9q9b55"; depends=[assertthat EQL univariateML]; }; @@ -12003,7 +12207,7 @@ in with self; { kerndwd = derive2 { name="kerndwd"; version="2.0.3"; sha256="0lvm007wzhyagyafmq47819hn66riwdcpymn56clc1sgch9i933m"; depends=[]; }; kernelFactory = derive2 { name="kernelFactory"; version="0.3.0"; sha256="001kw9k3ivd4drd4mwqapkkk3f4jgljiaprhg2630hmll064s89j"; depends=[AUC genalg kernlab randomForest]; }; kernelboot = derive2 { name="kernelboot"; version="0.1.10"; sha256="1fv00hbm4l5dxcw8hq2wlfxng49bc8k608ny70g3fy0grkh7r8vy"; depends=[future future_apply parallelly Rcpp]; }; - kernelshap = derive2 { name="kernelshap"; version="0.3.8"; sha256="0sbvgikq01275pab9zv13d65vf6fmnyssdrjvrdnbhp1xg2rscxf"; depends=[foreach]; }; + kernelshap = derive2 { name="kernelshap"; version="0.4.1"; sha256="11h5zxyxzdaw9dkxngcxpirhagd45f9n83v7db9pjcl2bjigip3n"; depends=[foreach]; }; kernhaz = derive2 { name="kernhaz"; version="0.1.0"; sha256="1cxwjnfyhxfjdbhs21airycs704jic21pdpsbxsx37wkl11cxpai"; depends=[doParallel foreach GA rgl]; }; kernlab = derive2 { name="kernlab"; version="0.9-32"; sha256="1p3gbn9qgc6yqx9irkl8c23khvkx77jl96hk9hn4vsrx6i7g6kk5"; depends=[]; }; kernplus = derive2 { name="kernplus"; version="0.1.2"; sha256="0z5zpj89nw7cdphg6frmjwqjxsl6g95xsa8zgsxmw2q75wwj1saz"; depends=[circular KernSmooth mixtools]; }; @@ -12014,8 +12218,9 @@ in with self; { keyToEnglish = derive2 { name="keyToEnglish"; version="0.2.1"; sha256="1wzn93gp1v6y8qh9kypydqadnf6fc7xzjili77b7j402hvb0a8zg"; depends=[jsonlite openssl stringr]; }; keyholder = derive2 { name="keyholder"; version="0.1.7"; sha256="19xbzpanwyfxywzki3m5jvams40ppxkplm7p1jqm6d5rviidiq1j"; depends=[dplyr rlang tibble]; }; keyperm = derive2 { name="keyperm"; version="0.1.1"; sha256="11jwh704iq134imv9p7brnjpvzbqyvd5bdw7id0ggnf7kp2w5rbj"; depends=[Rcpp slam tm]; }; - keypress = derive2 { name="keypress"; version="1.3.0"; sha256="0y9zz4q2kmya85j1dr0a3874k65r57wcwqgsbsa0l0az6lyc4v0i"; depends=[]; }; - keyring = derive2 { name="keyring"; version="1.3.1"; sha256="113rjhihqfhxdihnf6nwqbsknlnm8pqyhvnyxx624gyajl9mn3a7"; depends=[askpass assertthat filelock openssl R6 rappdirs sodium yaml]; }; + keyplayer = derive2 { name="keyplayer"; version="1.0.4"; sha256="17l45yj97d7n1lf32ck1zw84sv1gcd7i0f1j9pq7r673gb2sbvmi"; depends=[igraph matpow sna]; }; + keypress = derive2 { name="keypress"; version="1.3.1"; sha256="1jc0l3x2yd4d1q0108vj0iz8nxsrdhdfymkmadzzc0px76gwxci6"; depends=[]; }; + keyring = derive2 { name="keyring"; version="1.3.2"; sha256="0mps6q7yayx5l78vlq567pndlsjk71izd65znz3lj4dfbh0qq046"; depends=[askpass assertthat filelock openssl R6 rappdirs sodium yaml]; }; keyringr = derive2 { name="keyringr"; version="0.4.0"; sha256="04f0z6mqj75l5qhiab0zvjsvz3jz1bp6dfazkpgihjmls5k11dnh"; depends=[stringr]; }; keys = derive2 { name="keys"; version="0.1.1"; sha256="0jq7c70hyxpaxkrciy2jz4bf2mdcbcnmpjniwqffk1lkaxr0ni9b"; depends=[htmltools jsonlite shiny]; }; kfa = derive2 { name="kfa"; version="0.2.2"; sha256="0niw8b8f56cb8ppfl40mh925a5yrhg89aiac7qynh0ni42ywlw5g"; depends=[caret doParallel flextable foreach GPArotation knitr lavaan officer rmarkdown semTools simstandard]; }; @@ -12023,11 +12228,11 @@ in with self; { kfigr = derive2 { name="kfigr"; version="1.2.1"; sha256="0kys4j2n2n1v918v877798m34q431fpz0p0s6gxnfqnn26z2hy14"; depends=[knitr]; }; kfino = derive2 { name="kfino"; version="1.0.0"; sha256="14gpc72nin96g2sqzbj7z9ca2gs3kjl2k0yg1zfdrv8fgjsn9s6i"; depends=[dplyr ggplot2]; }; kgc = derive2 { name="kgc"; version="1.0.0.2"; sha256="14zbcimnglh5jj07dcaxp1dfjaz8syswy29nf8z39qmslv1hg9kk"; depends=[plyr shiny shinythemes]; }; - kgen = derive2 { name="kgen"; version="0.2.1"; sha256="02i3qki6qshq5sppn6mchfwyc6dbgchizylgkqj95jv63grja0wc"; depends=[checkmate data_table pbapply rappdirs reticulate rjson]; }; + kgen = derive2 { name="kgen"; version="0.3.1"; sha256="1rf7mic35jbaik9hw7j28sc98qjqjmzlv720lfpmgjsf6yhi2mlz"; depends=[checkmate data_table pbapply rappdirs reticulate rjson]; }; kgp = derive2 { name="kgp"; version="1.1.1"; sha256="021113hqs7ack852mksssaac1lj0k4mpf94yiws67qiygmsa693k"; depends=[]; }; kgrams = derive2 { name="kgrams"; version="0.2.0"; sha256="09py3p85ffa03m3xjvwscz4w61k1yxkxqy96im06509bx51qha0q"; depends=[Rcpp RcppProgress Rdpack rlang]; }; kgschart = derive2 { name="kgschart"; version="1.3.5"; sha256="1gdsrmnv8z99cldvig7grlq8gsbv3wpx7zdamw85lz563n4ln94d"; depends=[abind deepnet ggplot2 gridExtra magrittr matrixStats nnet png shiny stringr]; }; - khroma = derive2 { name="khroma"; version="1.11.0"; sha256="1d957wdf8z7vki3q3ciicls121p422ywpsayki82r2b79zl8swkp"; depends=[]; }; + khroma = derive2 { name="khroma"; version="1.12.0"; sha256="1w3rd98m3qk21p8zh3b13x9jbms5zd51il917qxdnxcyc4166n5s"; depends=[]; }; kibior = derive2 { name="kibior"; version="0.1.1"; sha256="1acrdlqbklhhd69i1gija8r3nsdgcnfvk5ngz7b2ndy2f58w5ynf"; depends=[Biostrings data_table dplyr elastic jsonlite magrittr purrr R6 rio Rsamtools rtracklayer stringr tibble tidyr]; }; kidney_epi = derive2 { name="kidney.epi"; version="1.2.0"; sha256="1hd6w7kxim5slmmqalf5sfjg8jcvhyzn5g4gf6h0lmaprsfszhja"; depends=[]; }; kidsides = derive2 { name="kidsides"; version="0.5.0"; sha256="0iw6mr5yqgj4sn3bvirzcdzzxdxpkyr2ci4flzyjb60p0gfwlr7b"; depends=[DBI R_utils RSQLite]; }; @@ -12047,7 +12252,7 @@ in with self; { kiwisR = derive2 { name="kiwisR"; version="0.2.0"; sha256="14fzf72swy221jcbiplss9dh7g03idrpbbyvbxp4bcqpxwr6hbsa"; depends=[dplyr httr jsonlite lubridate purrr tibble]; }; kknn = derive2 { name="kknn"; version="1.3.1"; sha256="1nzkg3dxaiqp87p56wm895qx5xn86hv5hjr73qvl1yiaxiq0x112"; depends=[igraph Matrix]; }; kko = derive2 { name="kko"; version="1.0.1"; sha256="08mgi7j1kirfnjsj3xi2wgr32cnqb88vxs15gfm6f1gq853xvhch"; depends=[doParallel ExtDist foreach grpreg knockoff]; }; - klaR = derive2 { name="klaR"; version="1.7-2"; sha256="0qdxripkwdqw5w6dvf9wj7d34z67qygi18nm98c76y95p3nw6dc0"; depends=[combinat MASS questionr]; }; + klaR = derive2 { name="klaR"; version="1.7-3"; sha256="1rg3p3y984s7k7y14agbh3kxh21rrvan3yzpvfimpnvw04f08v6k"; depends=[combinat MASS questionr]; }; klassR = derive2 { name="klassR"; version="0.2.1"; sha256="01d0gb5pascgv1h4fgcc0ndlrg7z4mv76bigmw0mixx92i9x61jk"; depends=[httr jsonlite tm]; }; klausuR = derive2 { name="klausuR"; version="0.12-14"; sha256="1nc84q5jaya4d7bi1m8zwbmyfsxzmv470nq2nj2j8xn5jv6ch4a5"; depends=[psych xtable]; }; kldtools = derive2 { name="kldtools"; version="1.2"; sha256="1r6j6ddylzxsfmymnf8hp7sm8c2ckr8xrdz75xlkgp4fgay106r2"; depends=[]; }; @@ -12061,12 +12266,12 @@ in with self; { kmed = derive2 { name="kmed"; version="0.4.2"; sha256="1pamwl28g6gc84x7sw9czqj8dpraq5pd3hdrf5m3yziwzkfxawnc"; depends=[ggplot2]; }; kmer = derive2 { name="kmer"; version="1.1.2"; sha256="0jimn9r0abglwxdl1zqz0lxa99cmj6haydkxjzqfbpx9by80wnww"; depends=[openssl phylogram Rcpp]; }; kmi = derive2 { name="kmi"; version="0.5.5"; sha256="1j6fyi004fl97l569sn05pb7bmc2jx5hi0blfd896qi309s9qkd8"; depends=[mitools survival]; }; - kml = derive2 { name="kml"; version="2.4.6"; sha256="1dmai5cvr9sfzqqrwm8bkmalaqbmjxaycxh4iar52bipih8h438j"; depends=[clv longitudinalData]; }; - kml3d = derive2 { name="kml3d"; version="2.4.6"; sha256="01ib3b56vnqyq4jabzdw5sbldp8bcn77pyc611wnwcqpgm9ym0a7"; depends=[clv kml longitudinalData misc3d rgl]; }; + kml = derive2 { name="kml"; version="2.4.6.1"; sha256="01wy3w4bczn5fa22rq5ibys44nif7260flshwsjghpk4hh6qz759"; depends=[clv longitudinalData]; }; + kml3d = derive2 { name="kml3d"; version="2.4.6.1"; sha256="1nah82m97kg6s6yh1aqdgypda6dj0cx6r2b2rdcz0mwkh55dqh74"; depends=[clv kml longitudinalData misc3d rgl]; }; kmodR = derive2 { name="kmodR"; version="0.2.0"; sha256="1khp383k5rr7nnn1fih7wfw6k202igxcj3ddwawyp895qa9w12cj"; depends=[]; }; knitLatex = derive2 { name="knitLatex"; version="0.9.0"; sha256="1igacc2sx8897wmnhh8kngd0fq6zqbi30chy5c8jw60zc38mi3wi"; depends=[knitr]; }; knitcitations = derive2 { name="knitcitations"; version="1.0.12"; sha256="1c7pl8jh61pv0brqanmyfy6s0ipxn312b2hjypcsjaph6b8mhj2q"; depends=[digest httr RefManageR]; }; - knitr = derive2 { name="knitr"; version="1.44"; sha256="015ylljvx0q2himch4k813021nvh0l7p5x3aqdkj3w0ax8x8k3ki"; depends=[evaluate highr xfun yaml]; }; + knitr = derive2 { name="knitr"; version="1.45"; sha256="1yw4fnzm8lvh6kpcdlvr1fahz7421h5mmaris58zlgn57fjxwbpf"; depends=[evaluate highr xfun yaml]; }; knitrBootstrap = derive2 { name="knitrBootstrap"; version="1.0.2"; sha256="1aj60j7f0gcs120fdrnfbnb7vk7lfn1phil0mghg6a5zldz4cqs3"; depends=[knitr markdown rmarkdown]; }; knitrProgressBar = derive2 { name="knitrProgressBar"; version="1.1.0"; sha256="18v5jrscfrin3mcs63bpj0q1drxk3zkhlbw93sqh0qrq04d4x02v"; depends=[R_oo R6]; }; knitrdata = derive2 { name="knitrdata"; version="0.6.1"; sha256="1am79r4rkrw7vjmyzc0cq4p52l2ypdw99rfhrvdsaq11yllx08mx"; depends=[knitr xfun]; }; @@ -12113,8 +12318,7 @@ in with self; { kuiper_2samp = derive2 { name="kuiper.2samp"; version="1.0"; sha256="0gcgayh7qdic9zprdvs6r8qvpqs467zrm0qzp2acb7alcp01jhpi"; depends=[]; }; kutils = derive2 { name="kutils"; version="1.73"; sha256="0xqg1s48afpn2w0mlqfwz3sj1gdjf05cpxq4z9r01k1476lvh6c9"; depends=[foreign openxlsx plyr RUnit xtable]; }; kvh = derive2 { name="kvh"; version="1.4.2"; sha256="0lx7p2rgvcjgg99chcan0qb9hafx226sqvdb1g1xpkdwvzbyxci8"; depends=[Rcpp]; }; - kwb_hantush = derive2 { name="kwb.hantush"; version="0.3.0"; sha256="1rlm7i95yw66asgkag93phig2y9lic4xl2fv3cbnr3v751f6a59m"; depends=[lattice]; }; - kyotil = derive2 { name="kyotil"; version="2023.2-2"; sha256="0sx8nw67pwy4flb01d5bhbzvxpc63h2b49ss2qz2abg46f2nnd74"; depends=[]; }; + kyotil = derive2 { name="kyotil"; version="2023.11-27"; sha256="029hac2sw58raipgwcnza9290ka3vk0f8ccclnzlix8ra4ldsqv6"; depends=[]; }; kza = derive2 { name="kza"; version="4.1.0.1"; sha256="1vx7wc8iwmr9d6ff2kcy6y3nyfj6jfzv4hxkv1fsas0rbjgfick4"; depends=[]; }; kzs = derive2 { name="kzs"; version="1.4"; sha256="1srffwfg0ps8zx0c6hs2rc2y2p01qjl5g1ypqsbhq88vkcppx1w9"; depends=[lattice]; }; l0ara = derive2 { name="l0ara"; version="0.1.6"; sha256="1cv48rbq080z7zx32hmlkpq7mi5axr09a1hyv3knl1vb9gql4qjq"; depends=[Rcpp RcppArmadillo]; }; @@ -12137,37 +12341,38 @@ in with self; { labstats = derive2 { name="labstats"; version="1.0.1"; sha256="1780slp9l1rqwr5ika6hv606jzbaa3g1ywzkjkd3ff2gb0cby3ni"; depends=[]; }; lacm = derive2 { name="lacm"; version="0.1.1"; sha256="01zd4zsas60kzxx4wsnxs6qqc72i4djwj8m7ryjyx5nrxgpjaixc"; depends=[numDeriv statmod]; }; lacrmr = derive2 { name="lacrmr"; version="1.0.5"; sha256="1lkn9hynqviz50h9k69wir4ajpymkdm1cfyg7hankjwnkypjp8rv"; depends=[dplyr httr janitor jsonlite magrittr sjmisc stringr]; }; - lactater = derive2 { name="lactater"; version="0.1.4"; sha256="1siyf2hqrxhri1gadvkg9dji7pg28l11h109frksc0lwgy6z7rhk"; depends=[broom dplyr forcats ggplot2 ggtext lubridate magrittr minpack_lm patchwork pracma rlang segmented stringr tidyr]; }; + lactater = derive2 { name="lactater"; version="0.2.0"; sha256="11wv998mapys2hgwwdgvgllcjsd4y7g7p19kg419xlx3py0c077p"; depends=[broom dplyr forcats ggplot2 ggtext lubridate magrittr minpack_lm patchwork pracma rlang segmented stringr tidyr]; }; lactcurves = derive2 { name="lactcurves"; version="1.1.0"; sha256="1ksllpgz519gzrs8gwfgg7743vj3j7ikmbwgisdjs77sdxxl7xyz"; depends=[orthopolynom polynom]; }; - lacunaritycovariance = derive2 { name="lacunaritycovariance"; version="1.1-5"; sha256="15jyn0ambpknzzh2lblsf20va5rw8vxa29gimjql069qlvaavq00"; depends=[RcppRoll spatstat spatstat_explore spatstat_geom spatstat_random]; }; + lacunaritycovariance = derive2 { name="lacunaritycovariance"; version="1.1-7"; sha256="10l5q4plnh1nnbcb3zh68mglrilcmlxsviznli8w8vzj2h5yfnhm"; depends=[RcppRoll spatstat spatstat_explore spatstat_geom spatstat_random]; }; laeken = derive2 { name="laeken"; version="0.5.2"; sha256="1p3ccbaydlr52p8qmgmm2l6kryvq6jjjx7mqn2vv0gpjaxqhyy92"; depends=[boot MASS]; }; lagged = derive2 { name="lagged"; version="0.3.2"; sha256="1ss69jdmfz2al131mvhflaa4hcg71a0balpnc8vkf0f9svhkcs52"; depends=[]; }; lagsarlmtree = derive2 { name="lagsarlmtree"; version="1.0-1"; sha256="1v3a580scxb1v5na3ab3ax9qlzbnay7nhm3ln5l8f9zgsqrg5lyh"; depends=[Formula partykit spatialreg]; }; lakemorpho = derive2 { name="lakemorpho"; version="1.3.2"; sha256="11bvrr4h9bxa01sf6qilgglhljmfpfil5yz1xrwlyaiv091gvlfp"; depends=[cluster geosphere raster sf sp]; }; laketemps = derive2 { name="laketemps"; version="0.5.1"; sha256="04742r379bzgbfr4243wwkb26cvfmnw50jzgygq7vblq00grzska"; depends=[dplyr reshape2]; }; - lamW = derive2 { name="lamW"; version="2.2.1"; sha256="1lz8iv6r07lrc9bghdmq5y8bfmlr1hdk1j02ghvmz3d7s3d9p0hz"; depends=[Rcpp RcppParallel]; }; + lamW = derive2 { name="lamW"; version="2.2.3"; sha256="0jq3xq2ll4lpj8f5aqwazqlb978nzyk7hln4iwlzrlkkcqc35qm1"; depends=[Rcpp RcppParallel]; }; lambda_r = derive2 { name="lambda.r"; version="1.2.4"; sha256="1mh1g0gsd58gng0hb29vww2yqb2jfs07kba5kxnnqck5j3izwlnj"; depends=[formatR]; }; lambdaTS = derive2 { name="lambdaTS"; version="1.1"; sha256="0fb44q5997588y6cv10kq3jv3qvwhg99q15i4cka4hsww08i9ib2"; depends=[abind bizdays car fANCOVA ggplot2 imputeTS lubridate modeest narray purrr readr scales stringr tictoc torch]; }; - lambdr = derive2 { name="lambdr"; version="1.2.4"; sha256="0fqprf5n5gc61zyj56lypgbh5hggxnldgkim1zj1h681fhkgimy5"; depends=[httr jsonlite logger]; }; + lambdr = derive2 { name="lambdr"; version="1.2.5"; sha256="1vbaxy15a925lmc9a6d0b9yxivw0gd6pw4a89acg797y84fgmyl4"; depends=[httr jsonlite logger]; }; lamle = derive2 { name="lamle"; version="0.3.1"; sha256="08fsylhqpk8hqm9kbqc4vlhmpaddr9cpgjjxvlfc9xqhnyhg7p3d"; depends=[fastGHQuad mvtnorm numDeriv Rcpp RcppArmadillo]; }; lamme = derive2 { name="lamme"; version="0.0.1"; sha256="1x9jl79iqikpjixajly1k8w2nkzskns2m0v242giknl0ikw298h1"; depends=[]; }; landest = derive2 { name="landest"; version="1.2"; sha256="1cr1qiz42j64yxpbpyll1l3lxazh1qq0ia4mh0qdyjk14kyyf9q0"; depends=[survival]; }; landform = derive2 { name="landform"; version="0.2"; sha256="0i99glylj0nz3r5i0p22ng9aygmjkh7q2ynw02z7jm3bfpw0wmv0"; depends=[terra]; }; landmix = derive2 { name="landmix"; version="1.0"; sha256="0qa5l82102r8y7sj7v5vcpqg93j2bpszp7fhlbxrzjxpisdh9vgx"; depends=[]; }; + landmulti = derive2 { name="landmulti"; version="0.5.0"; sha256="1wqkrx4pxi1zzllm802y6wfhfpam7g3nbzgwj71ragk2psxa351a"; depends=[emdbook landpred NMOF snow survival]; }; landpred = derive2 { name="landpred"; version="1.2"; sha256="0xbmr896fyl2gvh6vy7fy7aixa5n2ycvwm509z6ys5wh0r8p296k"; depends=[survival]; }; landsat = derive2 { name="landsat"; version="1.1.2"; sha256="13xjpw9hd1hhcs6d7xw9dc36808zjyqw3isn0ayafpww0wvv073n"; depends=[lmodel2 mgcv sp]; }; landscapeR = derive2 { name="landscapeR"; version="1.2"; sha256="1zm5mj861ycbc2m28yjqnkifx8grc4l718mf8r422m78jfakvcjy"; depends=[raster Rcpp]; }; - landscapemetrics = derive2 { name="landscapemetrics"; version="2.0.0"; sha256="0c7h6s9xsqf9jgwlkh4bpzmdg2hrzs16jrdpzn45n849bsv86g7n"; depends=[cli ggplot2 Rcpp RcppArmadillo terra tibble]; }; + landscapemetrics = derive2 { name="landscapemetrics"; version="2.1.1"; sha256="0l5slwq0mgkchs1pn3ns4qzgsf994xn73waqsvrwl4vb99a3d2aj"; depends=[cli ggplot2 Rcpp RcppArmadillo terra tibble]; }; landscapetools = derive2 { name="landscapetools"; version="0.5.0"; sha256="11zp6r414nkj8vhsbryzhkxmpal2bva8msaxf1v69xax70ilxyf1"; depends=[ggplot2 raster Rcpp tibble]; }; landsepi = derive2 { name="landsepi"; version="1.3.0"; sha256="0amfpdfnsl81f7sdfazajnvym8dgvcnrjiizq9ckqf0f7gyfgbfs"; depends=[DBI deSolve doParallel fields foreach Matrix mvtnorm Rcpp RSQLite sf sp splancs testthat]; }; - langevitour = derive2 { name="langevitour"; version="0.5"; sha256="0p7k159njgrfvw8adkzm6zma8b6ja2j9wwicrlywcqlbkwhbinbi"; depends=[assertthat htmlwidgets RANN]; }; + langevitour = derive2 { name="langevitour"; version="0.6"; sha256="0l63w2y0dfn98nkzf2lhc6wkvg6hrqhcl4p9492pg80kwdsyvz1a"; depends=[assertthat crosstalk htmlwidgets RANN]; }; languageR = derive2 { name="languageR"; version="1.5.0"; sha256="1iipnr2b4hd2w718prbh075j56m5xnchlcb2vg26m16qpydp6afn"; depends=[]; }; languagelayeR = derive2 { name="languagelayeR"; version="1.2.4"; sha256="1q82shdcdd84nr6bnfwgyyb81z8dycvj1i3vhwvdg710s15rgiyk"; depends=[attempt curl httr jsonlite]; }; languageserver = derive2 { name="languageserver"; version="0.3.16"; sha256="1rbjnw30fc58rk2qrhff3wx7in7spllr4kj8mfsfwvl43id54yb0"; depends=[callr collections fs jsonlite lintr R6 roxygen2 stringi styler xml2 xmlparsedata]; }; languageserversetup = derive2 { name="languageserversetup"; version="0.1.2"; sha256="05i8kcp1zpbkrqpq5vxxvxk9p7phyngxl0q6v76va0i7qnmy1v7a"; depends=[]; }; lans2r = derive2 { name="lans2r"; version="1.2.0"; sha256="0hk7rklkic4frp5w6k9kn5xi8hf3s87bgbjm58ca79sh3iyl0cnv"; depends=[dplyr ggplot2 R_matlab reshape2 rlang tidyr]; }; lar = derive2 { name="lar"; version="0.1-2"; sha256="0qda0y4ag10kg83wxs3z754kc8c1dg2rwciy64klk7an4ln43i5b"; depends=[data_table treemap xlsx]; }; - lares = derive2 { name="lares"; version="5.2.2"; sha256="0fcdwx8hgrlh7ghgvnp9i4hqr9n79sr1s9r4h7yssf1cyajc6x39"; depends=[dplyr ggplot2 h2o httr jsonlite lubridate openxlsx patchwork pROC rlang rpart rpart_plot rvest stringr tidyr yaml]; }; + lares = derive2 { name="lares"; version="5.2.4"; sha256="0qyzxg68ihsgp7sd8iyjhsa3jhlvj88hwnnq2kz97znw5gfd6rx2"; depends=[dplyr ggplot2 h2o httr jsonlite lubridate openxlsx patchwork pROC rlang rpart rpart_plot rvest stringr tidyr yaml]; }; lareshiny = derive2 { name="lareshiny"; version="0.0.3"; sha256="00pmlq3gz06p1g6xzx5y6n7ybljrhhmjnhi25chv3ii13r3nlfvf"; depends=[dplyr DT htmltools miniUI shiny shinydashboard shinyWidgets]; }; lars = derive2 { name="lars"; version="1.3"; sha256="17al1g0pvfz9frs2kxicqr8dyp7ciz3x87yx2l4lqd53ls6nm7n6"; depends=[]; }; lassopv = derive2 { name="lassopv"; version="0.2.0"; sha256="0yawnjw063jypk3riy9xab9cmliv6c9dnabi18670khd3gzb2r9z"; depends=[lars]; }; @@ -12178,24 +12383,24 @@ in with self; { latentcor = derive2 { name="latentcor"; version="2.0.1"; sha256="0c8ygjdqxb9zs6b42ncqh5va80vxamdphja18x8dazygynmcgjr0"; depends=[doFuture doRNG fMultivar foreach future geometry ggplot2 heatmaply MASS Matrix microbenchmark mnormt pcaPP plotly]; }; latentgraph = derive2 { name="latentgraph"; version="1.1"; sha256="11h7nrd81licvdikiwwfkz4x9i7drz09w5ns672b7fw0pj4qqgsr"; depends=[glmnet MASS pracma Rcpp RcppArmadillo]; }; latentnet = derive2 { name="latentnet"; version="2.10.6"; sha256="0zkh75cvsiprxfbrzyqi72wvsljxzsifcd71kyrr2m761v3sqm16"; depends=[abind coda ergm MASS mvtnorm network sna statnet_common]; }; - later = derive2 { name="later"; version="1.3.1"; sha256="1b342khxyvm3qnag36p6yr5nlrqbxqabm9f6qfxwxsmry20xdvi3"; depends=[Rcpp rlang]; }; + later = derive2 { name="later"; version="1.3.2"; sha256="07jn5gp4237va5pcq8lvqzyblgij7k2wj9k5wl93q3fd6cyhgxaj"; depends=[Rcpp rlang]; }; latex2exp = derive2 { name="latex2exp"; version="0.9.6"; sha256="1jp0l0hi5kv4yh28qg2yj2z5fj33gnfvdz2g2v4ibn516fj2d636"; depends=[magrittr stringr]; }; latexdiffr = derive2 { name="latexdiffr"; version="0.1.0"; sha256="021lhswy8nik2h1951h1affg8x5lchsa2amyx7fwrajp4bgq72yk"; depends=[fs rprojroot]; }; - latexpdf = derive2 { name="latexpdf"; version="0.1.7"; sha256="0n0hzr9jkg13kn56jcghcg4a6y8x0c3jffcvxv621azd9ldljgfl"; depends=[]; }; + latexpdf = derive2 { name="latexpdf"; version="0.1.8"; sha256="1drpb4mal389k7z3pcfkz68n3q5z1qjqdwp7q7k25awpvxjbrfbg"; depends=[]; }; latrend = derive2 { name="latrend"; version="1.5.1"; sha256="1a6dkxkrslbl99nyhwivh0wmr8axr8iqgy7cax952bzv38s30038"; depends=[assertthat data_table foreach magrittr matrixStats R_utils Rdpack rlang rmarkdown]; }; latte = derive2 { name="latte"; version="0.2.1"; sha256="1dcwxxj3yran5a3a8vvdfmx4ap69ql2jncxvmci4p4vcw4ki9j9g"; depends=[dplyr ggplot2 glue magrittr memoise mpoly stringr usethis]; }; - lattice = derive2 { name="lattice"; version="0.22-4"; sha256="1w5jgxpx9bkmj7s669aiwf8a1lc5vjqxkhb54a3yxxy1gnda7fjh"; depends=[]; }; - latticeDensity = derive2 { name="latticeDensity"; version="1.2.6"; sha256="0l9ypdpy09nnmanj2gvaxzj79s8d9iqwy6rv0rig5fwbqv1y6135"; depends=[sf sp spam spatialreg spatstat spatstat_geom spdep splancs]; }; + lattice = derive2 { name="lattice"; version="0.22-5"; sha256="1wd5dlxi0hd4l08g999y3xnxnaq06gwvflcqr9ym0cx131gbw7xs"; depends=[]; }; latticeExtra = derive2 { name="latticeExtra"; version="0.6-30"; sha256="1vcy4xr6c53nbvnxikjnlf5kd3n5hf4d8dzj5d41hj322dlsfl65"; depends=[interp jpeg lattice MASS png RColorBrewer]; }; - lava = derive2 { name="lava"; version="1.7.2.1"; sha256="0bpg75w0ri1mkf7cw9gbw1fjpy4mh9h48k019y772xjfgrf1yayl"; depends=[future_apply numDeriv progressr SQUAREM survival]; }; + lava = derive2 { name="lava"; version="1.7.3"; sha256="023av1mz4hr1lqv8cpbx0j1y3c7ljyns35rm838c618b6pqps22f"; depends=[future_apply numDeriv progressr SQUAREM survival]; }; lavaSearch2 = derive2 { name="lavaSearch2"; version="2.0.1"; sha256="04rd1r4qy1jiqmmda3h1gbihsyva88djq1apfil89v4lqr0za0b8"; depends=[abind doParallel ggplot2 lava MASS Matrix multcomp mvtnorm nlme Rcpp RcppArmadillo reshape2 sandwich]; }; - lavaan = derive2 { name="lavaan"; version="0.6-16"; sha256="150asz3k42ql6k2faldbbzvhnlq5zy94syznc451ns52jdrr5vqx"; depends=[MASS mnormt numDeriv pbivnorm quadprog]; }; + lavaan = derive2 { name="lavaan"; version="0.6-17"; sha256="1bppbv17b35h48vfci6zplix9zb5isi210za52cs9yyc68g2acwj"; depends=[MASS mnormt numDeriv pbivnorm quadprog]; }; lavaan_shiny = derive2 { name="lavaan.shiny"; version="1.2"; sha256="0qgswdpxb5af0l3v70sg0jrgsdwr88gz6zzwbk3pw5x6qnvnwb6r"; depends=[lavaan psych semPlot shiny shinyAce]; }; lavaanExtra = derive2 { name="lavaanExtra"; version="0.2.0"; sha256="0q443wx983vy2i4bn39psw2nwaqzjncdpm7lpwsj7bifjnsic5sb"; depends=[insight lavaan]; }; lavaanPlot = derive2 { name="lavaanPlot"; version="0.6.2"; sha256="03icyydr6sv4jkdfdjchsdrscr9lz9q74x5q17cx2iw3383j6lz5"; depends=[DiagrammeR lavaan magrittr stringr]; }; - lavacreg = derive2 { name="lavacreg"; version="0.2-0"; sha256="0wxf1kyga1xx9f3cys3gl9h50fivwjp44jdr4n93wmpnm9rcaljf"; depends=[fastGHQuad pracma Rcpp RcppArmadillo SparseGrid]; }; + lavacreg = derive2 { name="lavacreg"; version="0.2-1"; sha256="0hfkwsgkws1h910b3dgp7ka1mqmb5dnikrdjcsn99vfm61mq0rxk"; depends=[fastGHQuad pracma Rcpp RcppArmadillo SparseGrid]; }; lawstat = derive2 { name="lawstat"; version="3.6"; sha256="1bmv3aw4z07ypsb1z65kwdybg6c268vdy46q9nri8xsmrby3fw8b"; depends=[Kendall mvtnorm Rdpack]; }; - lax = derive2 { name="lax"; version="1.2.1"; sha256="1wlmxkgckc2sqcxxknsmpzb0d3fgc5zb97b2vksyjinz5y2vjc3a"; depends=[chandwich exdex numDeriv revdbayes sandwich]; }; + lax = derive2 { name="lax"; version="1.2.2"; sha256="0s5mzpf4g74mlpsbxrvfkqh1q6zc3ibya9lig4l2vkaar94rb8x5"; depends=[chandwich exdex numDeriv revdbayes sandwich]; }; + lay = derive2 { name="lay"; version="0.1.3"; sha256="0cg3sxbphmfyzdbqrgij5nm8xvhp5dizbjx82pl0xx1ms5p40b0r"; depends=[purrr rlang tibble vctrs]; }; lazy = derive2 { name="lazy"; version="1.2-18"; sha256="02phj1l92dh5qmcl9i8scxgj4v21knbfrwwixq74bgyzwb51ni4r"; depends=[]; }; lazyData = derive2 { name="lazyData"; version="1.1.0"; sha256="0mbmmx6dh8ph4lrx1b4gxbwz3jwxv4nqi0xvfzpzrm3bwbsjc634"; depends=[]; }; lazyWeave = derive2 { name="lazyWeave"; version="3.0.2"; sha256="1a7l0rgkp3xq2s6bikciq778fwyr282baa6jk9ip4a71s931p2ag"; depends=[Hmisc labelVector]; }; @@ -12207,9 +12412,9 @@ in with self; { lazytrade = derive2 { name="lazytrade"; version="0.5.3"; sha256="055wyaf36f5g27wly24i0sbf2k0rriga8xcgn241gszlzagrnh55"; depends=[cluster dplyr ggplot2 h2o lifecycle lubridate openssl readr ReinforcementLearning stringr tibble]; }; lba = derive2 { name="lba"; version="2.4.52"; sha256="04w275da78naxz1imbw78kpd0rns4ipmjgfs4f23h1q8zp5711fw"; depends=[alabama MASS plotrix rgl scatterplot3d]; }; lbfgs = derive2 { name="lbfgs"; version="1.2.1.2"; sha256="04fx9v1dn8rn09h98zxp71zcxidjmhmcv190h7mvbj3pqf3dh2bv"; depends=[Rcpp]; }; - lbfgsb3c = derive2 { name="lbfgsb3c"; version="2020-3.2"; sha256="07mhiaxhjjma5c65z3pz7wchgsqn4b19labzyq25ncnmj319fxrg"; depends=[numDeriv Rcpp RcppArmadillo]; }; + lbfgsb3c = derive2 { name="lbfgsb3c"; version="2020-3.3"; sha256="0wk3jk94rrdjy5jj5d4a7szyx9xa4pw42s4ycwbcg23b4vas9r30"; depends=[numDeriv Rcpp RcppArmadillo]; }; lbm = derive2 { name="lbm"; version="0.9.0.2"; sha256="0mn0k5liwrnbsl5lf4k5b8j2y79bkk689v8wrvcmj3l7q2abaxhf"; depends=[]; }; - lboxcox = derive2 { name="lboxcox"; version="1.1"; sha256="1b12zm085mshfqg2pwj0w9k6ngasdjbbw8wkhc3vyw9d2gmn5qp1"; depends=[doParallel foreach MASS maxLik survey]; }; + lboxcox = derive2 { name="lboxcox"; version="1.2"; sha256="0jklfgw7dwslafsivb9z2q1vgv367kk9gbgjabz04y0kracxaa8q"; depends=[doParallel dplyr foreach MASS maxLik R_utils survey]; }; lbreg = derive2 { name="lbreg"; version="1.3"; sha256="1z9vixf6sl0k9lizngc3859lk32srkk1d8y133sl6s37ppmqb4s2"; depends=[MASS]; }; lcars = derive2 { name="lcars"; version="0.3.8"; sha256="0c68f9l69brdjpiabpjwpfjll7hmgfn3mi6zrjpgzc8jvvlfxi44"; depends=[ggplot2 shiny trekcolors]; }; lcc = derive2 { name="lcc"; version="1.1.4"; sha256="16iaja9dgnm6rjsaliz574mds1rgz07rk0r5dgwp2mc7kx0lhvgz"; depends=[doRNG doSNOW foreach ggplot2 hnp nlme]; }; @@ -12217,7 +12422,7 @@ in with self; { lchemix = derive2 { name="lchemix"; version="0.1.0"; sha256="1g2w57fi6kvsyir14hnxh0v6xwjdnbisafvjxvn1g6a4h55dg9i0"; depends=[MCMCpack mvtnorm]; }; lcmm = derive2 { name="lcmm"; version="2.1.0"; sha256="159hdi4800b7r25fqx2b4rlr4n7837f75hpmfp1qx85wyl5198nd"; depends=[doParallel marqLevAlg mvtnorm nlme numDeriv randtoolbox survival]; }; lconnect = derive2 { name="lconnect"; version="0.1.1"; sha256="1lx0z72aiy2hbh0wxn3ni3dyr3s2v8xirkvszlxvgfzkfmjx05j5"; depends=[igraph sf]; }; - lcopula = derive2 { name="lcopula"; version="1.0.6"; sha256="03qf9skls0h2z88ykm863m0w394n24rkxgg0qdjzxyizhv2arf3l"; depends=[copula Rcpp]; }; + lcopula = derive2 { name="lcopula"; version="1.0.7"; sha256="1lzk4lvdlqvnacmak75r4fn1mn2fxfzzlyh94k5r8iqgrpq5zsss"; depends=[copula Rcpp]; }; lcpm = derive2 { name="lcpm"; version="0.1.1"; sha256="0pqmizli5rhyaxvxrjycf8d5kqrm23i3vdz00r8zmijjpiz2p9s2"; depends=[Matrix numDeriv plyr]; }; lcra = derive2 { name="lcra"; version="1.1.2"; sha256="1kyjzb5ss64pg1sdnc8h7npcf4hsfgf4hhqh2yxl50d2zf4a4iyl"; depends=[coda rjags rlang]; }; lcsm = derive2 { name="lcsm"; version="0.3.2"; sha256="13iy0d37rqlw7k6xgb2rsd2pz1rrjbc5c14gqaxgwmz9pk93dlxp"; depends=[broom cli dplyr ggplot2 lavaan magrittr purrr rlang semPlot stringr tibble tidyr]; }; @@ -12228,12 +12433,12 @@ in with self; { ldamatch = derive2 { name="ldamatch"; version="1.0.2"; sha256="1nzl9pf223z2nwpaw5721qw8p1va70avpjwj1myv9q054zaspmgb"; depends=[car data_table entropy foreach gmp iterators iterpc kSamples RUnit]; }; ldatuning = derive2 { name="ldatuning"; version="1.0.2"; sha256="0367y6k5i4sccwfcm89xyc62qblrlwnm6hsa2jf346rnrfz9hkkc"; depends=[ggplot2 reshape2 Rmpfr scales slam topicmodels]; }; ldbod = derive2 { name="ldbod"; version="0.1.2"; sha256="1ylzkswnhf4jnjx2ijasy49pj78ffx333za0bx2fnf3g85kicqiv"; depends=[mnormt RANN]; }; - ldbounds = derive2 { name="ldbounds"; version="2.0.1"; sha256="07da04z2xsbx8m3j14n8vpfvxps7val8slx3z3m1izwyc5mda8qs"; depends=[]; }; + ldbounds = derive2 { name="ldbounds"; version="2.0.2"; sha256="19xx8a4qn9lz8r9hf344xn2rhr177nzscivxgsai9n3gwjc893d9"; depends=[]; }; lddmm = derive2 { name="lddmm"; version="0.4.0"; sha256="1y8zcjdfwqknw5r1y7lypmrwkm4yf2a2riqqpmvw6immiilcb40w"; depends=[dplyr ggplot2 gtools LaplacesDemon latex2exp plyr RColorBrewer Rcpp RcppArmadillo RcppProgress reshape2 rgen tidyr]; }; - ldhmm = derive2 { name="ldhmm"; version="0.5.1"; sha256="1jwgxwzz56n6hhpp1qks1x0jsfbrjgfsl6h5sp7498l4d2f279ij"; depends=[ecd ggplot2 moments optimx scales xts zoo]; }; + ldhmm = derive2 { name="ldhmm"; version="0.6.1"; sha256="0br0zx5qiv4q1gg3q4kw8jhm4rwycajgp968fwal87mzid65q3ni"; depends=[ggplot2 gnorm moments optimx scales xts yaml zoo]; }; ldsep = derive2 { name="ldsep"; version="2.1.5"; sha256="1abjb4ybxqipq5383r82ngy19p84331sfpi817wv7jsv6q99igrb"; depends=[abind ashr corrplot doParallel foreach lpSolve matrixStats modeest Rcpp RcppArmadillo]; }; ldsr = derive2 { name="ldsr"; version="0.0.2"; sha256="0wmxpglad1mk2c1gi9kxmh149r8ad0l8i2xlfs1hdjb6a4wxsklr"; depends=[data_table foreach MASS Rcpp RcppArmadillo]; }; - ldt = derive2 { name="ldt"; version="0.4.2"; sha256="00zm1i73d9ivpgf1h7mr45dpbn3ks5lrixa3h07k94767iaini6c"; depends=[BH MASS Rcpp Rdpack tdata]; }; + ldt = derive2 { name="ldt"; version="0.5.2"; sha256="0dl9fy83a00rrslg3lp9fa64ps0d3mgll31w1n2m7bn1sq4y75s0"; depends=[BH MASS Rcpp Rdpack tdata]; }; leabRa = derive2 { name="leabRa"; version="0.1.0"; sha256="08yiwyfg9bp4i9w5yyw9p63wyvgj39kd64y3h21j2jmpw8zxncdq"; depends=[plyr R6]; }; leaderCluster = derive2 { name="leaderCluster"; version="1.5"; sha256="1alm7ar71l0ylasy0f14mdnla5vfcm604nhmk227pwcgivl588mf"; depends=[]; }; leafR = derive2 { name="leafR"; version="0.3.5"; sha256="02kimgffynf7nx164g1vw30wcv2plr7a5gf27q4x87c9c8b0cb1b"; depends=[data_table lidR raster sp]; }; @@ -12242,7 +12447,7 @@ in with self; { leafem = derive2 { name="leafem"; version="0.2.3"; sha256="1qvmygxm5957k7mnbi05vs3sjcwng9f18hbxx6143nl38fm5pzfy"; depends=[base64enc geojsonsf htmltools htmlwidgets leaflet png raster sf]; }; leafgl = derive2 { name="leafgl"; version="0.1.1"; sha256="042jps6zh4xr0xj19a7fbgrcb6q6gsw2q5f191lyskr8iajdrz1h"; depends=[geojsonsf htmltools jsonify leaflet sf]; }; leaflegend = derive2 { name="leaflegend"; version="1.1.1"; sha256="1bh1b9gfh3fhnj648wqbs3a9k967fynznpqb65qgpjsjjjc67x5c"; depends=[base64enc htmltools htmlwidgets leaflet]; }; - leaflet = derive2 { name="leaflet"; version="2.2.0"; sha256="0k0zplbhmvld6q1id17s827z1230kvnz16c4hlvp6jn9g26yy0dq"; depends=[crosstalk htmltools htmlwidgets jquerylib leaflet_providers magrittr png raster RColorBrewer scales sp viridis xfun]; }; + leaflet = derive2 { name="leaflet"; version="2.2.1"; sha256="1gfsf7bsmp418zv4gpk5i1xg5vvgqwpdkznnvj5x0mk4rcqk1i81"; depends=[crosstalk htmltools htmlwidgets jquerylib leaflet_providers magrittr png raster RColorBrewer scales sp viridis xfun]; }; leaflet_esri = derive2 { name="leaflet.esri"; version="1.0.0"; sha256="01bwzxh2rdhpvvazaxsji8axl765q1ix1fdxla6i61nvqkpw3dz1"; depends=[htmltools leaflet leaflet_extras]; }; leaflet_extras = derive2 { name="leaflet.extras"; version="1.0.0"; sha256="0li7651cwlz7sg04xdrmvhkrf0n6amaydck7gqz0wkb6wq8hcyzw"; depends=[htmltools htmlwidgets leaflet magrittr stringr]; }; leaflet_extras2 = derive2 { name="leaflet.extras2"; version="1.2.2"; sha256="0r17wj2qg85y6wcszmbq6nf49k5ddsfprqdscqg2bwdszxrvw2c9"; depends=[htmltools leaflet magrittr]; }; @@ -12264,16 +12469,17 @@ in with self; { leastcostpath = derive2 { name="leastcostpath"; version="2.0.12"; sha256="0nkahghj9vvhcsq8h39y8kvcpgglwhnb0wcdhvkqzwnsparl58kd"; depends=[doParallel foreach gstat igraph Matrix sf terra]; }; ledger = derive2 { name="ledger"; version="2.0.9"; sha256="0ynr1g7vfkabl78zjnshyxixk45g28bi9h1p4zjfl83009yhqjwx"; depends=[dplyr rlang stringr tibble tidyr tidyselect]; }; leem = derive2 { name="leem"; version="0.1.0"; sha256="1sm9v3m95fbg3apvv3jjf47qxn8v6ipdsm1103dqk4zngmsz4xia"; depends=[tkrplot]; }; - lefko3 = derive2 { name="lefko3"; version="6.1.1"; sha256="1mjrhs1nr6r7ribnzlpw4klk4zvx7x4dml07mkndw4vs9ybx5jn1"; depends=[BH glmmTMB lme4 MASS Matrix MuMIn pscl Rcpp RcppArmadillo VGAM]; }; + lefko3 = derive2 { name="lefko3"; version="6.1.3"; sha256="0mpzwn7sadfa8vscmmf34jagqnldhmhyl0mbhsri0zj4g5mjzflf"; depends=[BH glmmTMB lme4 MASS Matrix MuMIn pscl Rcpp RcppArmadillo VGAM]; }; legion = derive2 { name="legion"; version="0.1.2"; sha256="0463a743n6k21v6nyacmp2li9dngaaww9lh83150621s7pdycw3s"; depends=[generics greybox nloptr Rcpp RcppArmadillo smooth zoo]; }; legislatoR = derive2 { name="legislatoR"; version="1.1.0"; sha256="12ij2xqasc4j7gx79wzbdg3wvg8dn9azj0qj61s4c6ficyr0x0bv"; depends=[curl dplyr]; }; legocolors = derive2 { name="legocolors"; version="0.3.1"; sha256="0ds9c2x0x590yk7mrjm4hh7k72p51slssg7jlprd71mw6hry91ma"; depends=[]; }; - leiden = derive2 { name="leiden"; version="0.4.3"; sha256="0f09k3mhb0di2cz1q95y6qd3rqh7xdybn0dpnd4ifqhfhr5lnika"; depends=[igraph Matrix reticulate]; }; + lehdr = derive2 { name="lehdr"; version="1.1.3"; sha256="0jkfnda7dpkhvlam6l4r5b80yrrhnvlx61frxi56qr7mws5z2h1w"; depends=[dplyr glue httr2 magrittr readr rlang stringr]; }; + leiden = derive2 { name="leiden"; version="0.4.3.1"; sha256="1qihzjrwcb09aga27frcdrdv4dp0g295dbrk07fqykbjlb7vpv59"; depends=[igraph Matrix reticulate]; }; leidenAlg = derive2 { name="leidenAlg"; version="1.1.2"; sha256="0wqay0rf28pgaf88bsvmrwgggzbma93rv9nqbydhjf1lc96ay1lz"; depends=[igraph Matrix Rcpp RcppArmadillo RcppEigen sccore]; }; - leidenbase = derive2 { name="leidenbase"; version="0.1.25"; sha256="1lym6rq6kkd693x77j7a364s1q8p9b2dw8qpxjq2cagvjwsv7bly"; depends=[igraph]; }; + leidenbase = derive2 { name="leidenbase"; version="0.1.27"; sha256="09vvkn8czf6w4vib5jf3np2q9w3i8xdl2fbcikvzrb4ah9l8l5n3"; depends=[igraph]; }; leiv = derive2 { name="leiv"; version="2.0-7"; sha256="15ay50886xx9k298npyksfpva8pck7fhqa40h9n3d7fzvqm5h1jp"; depends=[]; }; lemna = derive2 { name="lemna"; version="1.0.1"; sha256="13ldgkzd1ggmqzipic9lw14zxq57zdzh1s83ih2mfib1n8f0pwg2"; depends=[deSolve ggplot2 gridExtra]; }; - lemon = derive2 { name="lemon"; version="0.4.6"; sha256="0v1kbyk64yzsk92h6yq03kp9alc9632qprznsws61r8firiskim5"; depends=[ggplot2 gridExtra gtable knitr lattice plyr scales]; }; + lemon = derive2 { name="lemon"; version="0.4.7"; sha256="1r33n7bkfhjpyi23j7gsi387qvyazcy9b912dsd3vg2yqir8s26p"; depends=[ggplot2 gridExtra gtable knitr lattice plyr scales]; }; lenght = derive2 { name="lenght"; version="0.1.0"; sha256="0w7r5rizif2g6dg5ldcdnd0lj1s6v2z46w9j9g0zdlidx83a8vdn"; depends=[]; }; lenses = derive2 { name="lenses"; version="0.0.3"; sha256="08akwzlc5gk2rxbh9xp67n5ahdcld60932ascczjv0accrkxizhk"; depends=[magrittr rlang tidyselect]; }; leontief = derive2 { name="leontief"; version="0.2"; sha256="1gy23047c6gci9m83yrb662d5685x1kky6m94w68swms59gdc6yp"; depends=[Rcpp RcppArmadillo]; }; @@ -12282,10 +12488,11 @@ in with self; { leri = derive2 { name="leri"; version="0.0.1"; sha256="1309v58xdw3p6y2wpnl64vgsds5kvfiary2a3fa041kz23jzbp3c"; depends=[ncdf4 raster]; }; lero_lero = derive2 { name="lero.lero"; version="0.2"; sha256="03ll7jzcay0swwpmxyf0y9k2h8mxx4p5v3ggm9dgdz4j99934l70"; depends=[]; }; less = derive2 { name="less"; version="0.1.0"; sha256="1pgixa04rjngfg0yhxyg4qhd6g0pj8zyb3q8mfa3fjxzpywdy70a"; depends=[caret e1071 FNN MLmetrics pracma R6 randomForest RANN rpart wordspace]; }; - lessR = derive2 { name="lessR"; version="4.2.9"; sha256="0xl26bbp4ksqqp769vgc591rvw9h9ivvm94cwk0nq06vy8v4fgxp"; depends=[colorspace ellipse knitr lattice latticeExtra leaps openxlsx robustbase shiny]; }; + lessR = derive2 { name="lessR"; version="4.3.0"; sha256="16nnnswv7d0dz4bw8fvys1i7zd6c56l419fyk9bv0k37vhdnrini"; depends=[colorspace ellipse knitr lattice latticeExtra leaps openxlsx robustbase shiny]; }; lessSEM = derive2 { name="lessSEM"; version="1.5.2"; sha256="0hnhr87pb8iia144br84sslbp2jp97iad9702wpv7430qfx740l0"; depends=[ggplot2 lavaan mvtnorm numDeriv Rcpp RcppArmadillo RcppParallel rlang stringr tidyr]; }; lest = derive2 { name="lest"; version="1.1.0"; sha256="1d69kvdl31crv4ik8bwylq3s3f4skzrjc4x49c79w443g64n2jp9"; depends=[]; }; lestat = derive2 { name="lestat"; version="1.9"; sha256="1skxymdf3ncmdbskh7711xxgwsmwxfxnl52gcgw06jscx6s6wrsd"; depends=[MASS]; }; + letsR = derive2 { name="letsR"; version="5.0"; sha256="1snhs3m2jzb5mzkn4a3lhgfzmy385aii73aasxbayscfa10m23vb"; depends=[geosphere sf terra]; }; lettervalue = derive2 { name="lettervalue"; version="0.2.1"; sha256="1jqzh718xzhjb88nzxzjx2y501g1srs26xqah1byksz2aj4sn3g5"; depends=[glue purrr tibble]; }; levitate = derive2 { name="levitate"; version="0.2.0"; sha256="1mrpgq5505qs31vw2wif1cz4iqbqnj6mvfk60i5sg6p9nnn328wr"; depends=[rlang stringdist]; }; lexRankr = derive2 { name="lexRankr"; version="0.5.2"; sha256="0vb4m4g88k05yhjla1gwp8ck08356r9dzwal6cq7lb6xm6pl5gvi"; depends=[igraph Rcpp SnowballC]; }; @@ -12312,23 +12519,23 @@ in with self; { liayson = derive2 { name="liayson"; version="1.0.5"; sha256="1h3xyy40zvmllqlskgnmm755m0xds66hgpgk48zc9i2i3qj6165j"; depends=[ape arules biomaRt distances e1071 gplots matlab phangorn plyr proxy RColorBrewer]; }; libbib = derive2 { name="libbib"; version="1.6.4"; sha256="1jcdsvg5xgc7yzdc00k2brsiviyzflsdgiyk77icw08bwlbxh9mk"; depends=[curl data_table pbapply stringr xml2]; }; libcoin = derive2 { name="libcoin"; version="1.0-10"; sha256="1bvysrq2s3951vr5ab1jzbz4hyx5j04yzh04vxdpd287bm4y08rh"; depends=[mvtnorm]; }; - libgeos = derive2 { name="libgeos"; version="3.11.1-1"; sha256="07zwnwmz5cvg858ykx6pwxd044ivmsvb5g8rrbi1y3qpmkrby0qp"; depends=[]; }; - libr = derive2 { name="libr"; version="1.2.8"; sha256="0kqjr327hck9p763wzzvh5skimn4larblfyhfqqyc2323z2g5d11"; depends=[common crayon data_table dplyr haven openxlsx Rcpp readr readxl tibble]; }; + libgeos = derive2 { name="libgeos"; version="3.11.1-2"; sha256="0d4gfcll0z4f57sv8vax2bbc4fvs4da4510qwisd7wf5ghjhsbb0"; depends=[]; }; + libr = derive2 { name="libr"; version="1.2.9"; sha256="1crvizk2llfr08giq5il0rpjjm5vn50sjbk35w57c5lyb611lxk1"; depends=[common crayon data_table dplyr haven openxlsx Rcpp readr readxl tibble]; }; librarian = derive2 { name="librarian"; version="1.8.1"; sha256="0bbgx9pdwcv64p6zdrw3m0893ar4bw6z90vhbgplp53l65cch548"; depends=[BiocManager remotes]; }; librarysnapshot = derive2 { name="librarysnapshot"; version="0.1.2"; sha256="0v4x564zpm58kxs5n84bi6mcjhbzjg6a2lc30vsc8kbm3qy0nq38"; depends=[]; }; libstable4u = derive2 { name="libstable4u"; version="1.0.3"; sha256="1qhq255s20h30wrbfwdda35gjiijs9vri49jq2cnhl2kwmcgg71b"; depends=[Rcpp RcppGSL]; }; lidR = derive2 { name="lidR"; version="4.0.4"; sha256="0zd5ygnv6ikgkvipyg1s7g0qf79fx58hwr7gs9lz6c7g71awm04k"; depends=[BH classInt data_table glue lazyeval raster Rcpp RcppArmadillo rgl rlas sf sp stars terra]; }; lidaRtRee = derive2 { name="lidaRtRee"; version="4.0.5"; sha256="1a3c0lmmg3my5rwaq30gcg3jhrd1dndlsa49dgav3gv9l214ri3w"; depends=[car gvlma imager leaps lidR reldist sf terra]; }; - lifeR = derive2 { name="lifeR"; version="0.9.7"; sha256="1jhywwb8h2s0wbn14p6516p2bg3b8pbjw30vqz63dmbr51y6wriz"; depends=[curl dplyr ggmap ggplot2 jsonlite knitr readr rmarkdown stringr]; }; + lifeR = derive2 { name="lifeR"; version="1.0.1"; sha256="1bgs8m2a4k4p31lw50kgv9mg0hg7afdaxg9sy6ss1n5s68920h5w"; depends=[curl dplyr ggplot2 jsonlite knitr maptiles readr rmarkdown stringr terra tidyterra]; }; lifecontingencies = derive2 { name="lifecontingencies"; version="1.3.11"; sha256="1wz0v7abl3g3kgbp613rx5rw2ryxahk1h8bk8d3p5v7wyfwqignh"; depends=[markovchain Rcpp]; }; lifecourse = derive2 { name="lifecourse"; version="2.0"; sha256="1m8ihqvzhzpq2m2pdvh37bpq9pdbj23r3y0jkl3q8farh3qj473d"; depends=[TraMineR]; }; - lifecycle = derive2 { name="lifecycle"; version="1.0.3"; sha256="1hk9mblhap429fk77qpgc4hv0j91q5wpahi0y76w118m471zsnb4"; depends=[cli glue rlang]; }; + lifecycle = derive2 { name="lifecycle"; version="1.0.4"; sha256="1k4ibf2x90xgmzaq47vf9wrsh6a2fp2lg1l8bq89632bx33x795d"; depends=[cli glue rlang]; }; lifelogr = derive2 { name="lifelogr"; version="0.1.0"; sha256="1wygvw61ygpww0kahxhmjdncwg4zc2cshs0brzw18nfqaj8vpfav"; depends=[dplyr fitbitScraper ggplot2 lazyeval lubridate modelr plyr R6 shiny stringr tibble tidyr]; }; liftLRD = derive2 { name="liftLRD"; version="1.0-9"; sha256="11xrh4pjvlqb0297a2wzngpa1m3b09axvcfd16hg393rifrisgh4"; depends=[adlift nlt]; }; liftr = derive2 { name="liftr"; version="0.9.2"; sha256="0azi831c4f0vcq27a3q86vj90zvwrzcy4plhj9hqkk4qz8xw113x"; depends=[knitr rmarkdown rstudioapi stringr yaml]; }; lifx = derive2 { name="lifx"; version="0.2.0"; sha256="0p9ljd3s3lc1rkhzpp801izy9y52f0yc1dsrsxwx5gi89cnib596"; depends=[assertthat crayon curl httr jsonlite]; }; liger = derive2 { name="liger"; version="2.0.1"; sha256="121ipwznm40x2xhhlxd20385va4nmvgni5dg24lbhyfn5sb3dsy1"; depends=[matrixStats Rcpp RcppArmadillo]; }; - lightgbm = derive2 { name="lightgbm"; version="3.3.5"; sha256="1bnzggia48jkd1ffdzhznmbk76dw3mab65i7rmg967zcflapv7rh"; depends=[data_table jsonlite Matrix R6]; }; + lightgbm = derive2 { name="lightgbm"; version="4.2.0"; sha256="0c0q597agzdaimy0q1mssdpm0pw4yvqq9w6n8syvgz1g5q0mcwqi"; depends=[data_table jsonlite Matrix R6]; }; lightr = derive2 { name="lightr"; version="1.7.0"; sha256="0jqkd5nwnlbifl65i08fflla522y5vp8s39sqx9kl2pidn6z9rp6"; depends=[future_apply progressr xml2]; }; lightsout = derive2 { name="lightsout"; version="0.3.2"; sha256="0wkpg4yvn2br0r1vb23vl4ayhg4m8zph57p67wf3a4c0xqga3kvr"; depends=[magrittr shiny shinyjs]; }; likelihood = derive2 { name="likelihood"; version="1.9"; sha256="0w9p2vzrcln6a35b8pmlli01vq67vdbp4cnc9hb256syldsj7pp4"; depends=[nlme]; }; @@ -12350,11 +12557,10 @@ in with self; { lincom = derive2 { name="lincom"; version="1.1"; sha256="1krvpk8m2bnkxm3z10sgbx4fcj54kb1sc9n63zjq33ygl4bhnm6d"; depends=[Matrix Rmosek SparseM]; }; linconGaussR = derive2 { name="linconGaussR"; version="0.1"; sha256="10l7qajqa8f8yq3zbjmjxf0va2krq1rab42ihfhz2jyv3mn24xsi"; depends=[MASS Rcpp RcppArmadillo]; }; lindia = derive2 { name="lindia"; version="0.10"; sha256="0i4mi19pcbpiqbwzj5ga9jhzi0z1qsf779kndyz9sdd9wgxdz8zg"; depends=[ggplot2 gridExtra MASS]; }; - linea = derive2 { name="linea"; version="0.1.1"; sha256="1p3wd3m239x37hd4g4gp4nbgf4jlwk9lx0a00781jx7h2gcg32s7"; depends=[car dplyr ggplot2 gtrendsR lubridate magrittr openxlsx plotly purrr RColorBrewer readr readxl reshape2 sjmisc stringr tibble tidyr tidyverse tis zoo]; }; linearModel = derive2 { name="linearModel"; version="1.0.2"; sha256="032liplyjw7n0ylvpqv038pf8sbfbcz58zka5rr76cvh2xzf87vg"; depends=[]; }; lineartestr = derive2 { name="lineartestr"; version="1.0.0"; sha256="0bzsywk97j2mmsi7pj9267za1q2601crynh9kszwj6xjbg08nvsm"; depends=[dplyr forecast ggplot2 Matrix readr sandwich tidyr viridis]; }; linelist = derive2 { name="linelist"; version="1.0.0"; sha256="0bq2j5gw2arv6v83k1mhidp52rq3wk00lx6fxn42zy09ji2fdiv9"; depends=[checkmate dplyr lifecycle tidyselect]; }; - linemap = derive2 { name="linemap"; version="0.2.0"; sha256="04nb0hmmikksp7ak4vdam9r2dpv7w3r5wkxxbjr7yk9pfq5gjncp"; depends=[sf]; }; + linemap = derive2 { name="linemap"; version="0.3.0"; sha256="1fyvab2m742klsl94k2vc5qv0ykwcj0ybm3vv0mdv94nlmcm2gk7"; depends=[terra]; }; lineup = derive2 { name="lineup"; version="0.42"; sha256="1k6l3vl9g6cz3jl1fz6r1dm3lfpmis6yylra69c3s8l8l4fz0gzy"; depends=[class qtl]; }; lineup2 = derive2 { name="lineup2"; version="0.6"; sha256="0qkxwn30g0bjm9aq9a59pb3xq844qr43ribnk607zlf8lwbibsk2"; depends=[Rcpp]; }; lineupjs = derive2 { name="lineupjs"; version="4.6.0"; sha256="198a87hhn1f77ix3mrv8mi04qxlv392aw1cg852h8s6sr2ayxqgl"; depends=[htmlwidgets]; }; @@ -12363,7 +12569,7 @@ in with self; { lingmatch = derive2 { name="lingmatch"; version="1.0.6"; sha256="01cp6sdns2bgfclcz21fhb69q39sr1zqxx2h582kp5s86ikkxbr3"; depends=[BH Matrix Rcpp RcppParallel]; }; lingtypology = derive2 { name="lingtypology"; version="1.1.15"; sha256="1bb2igk5d8sq7fw942i99xiz7vvgxd1f9d9s520jla5k5br2fgjp"; depends=[jsonlite leaflet leaflet_minicharts stringdist]; }; linguisticsdown = derive2 { name="linguisticsdown"; version="1.2.0"; sha256="1y2g8h0p4q4mjrawzyprsdw8ynqcbpnjypyhdaf03pcwqglcirkl"; depends=[DT knitr magrittr miniUI rstudioapi shiny stringr]; }; - link2GI = derive2 { name="link2GI"; version="0.5-2"; sha256="0a05ahkrg7587l9kpfky7hjvwry1xiiw9dmzqmhg31bc6js6hg61"; depends=[devtools R_utils roxygen2 sf stringr terra xml2]; }; + link2GI = derive2 { name="link2GI"; version="0.5-3"; sha256="192f3cilra1lq8wg2hn41z2a7ag4m9svkc6smw0rf7np2xv9b2a6"; depends=[devtools R_utils roxygen2 sf stringr terra xfun xml2]; }; linkcomm = derive2 { name="linkcomm"; version="1.0-14"; sha256="15xm4c7sqpid1vjra250dnvdx98qgzbzmvaycf3zqqnqcmy5bw9n"; depends=[dynamicTreeCut igraph RColorBrewer]; }; linkedInadsR = derive2 { name="linkedInadsR"; version="0.1.0"; sha256="1849n9lk3j6jryshz9vz6pxsrqarzqjfrnf91xiwws8kiv65v8p4"; depends=[jsonlite]; }; linkprediction = derive2 { name="linkprediction"; version="1.0-0"; sha256="0p2abdq6ad689236w2d0khlycpjgy6j7xrlb96ngl6csgxwm07bl"; depends=[igraph intergraph]; }; @@ -12373,7 +12579,7 @@ in with self; { linpk = derive2 { name="linpk"; version="1.1.2"; sha256="0i87sfh01dl3xqs5vy3ha2prg952zpiq8fbl2amaiamg1qwl2y34"; depends=[mvtnorm]; }; linprog = derive2 { name="linprog"; version="0.9-4"; sha256="1d34m2nyk7m6j2dci69bhy5mlw479xax1517j7f14pq7vhpsm9l1"; depends=[lpSolve]; }; lintools = derive2 { name="lintools"; version="0.1.7"; sha256="03sfx1w3kl7xk79bpw6hddk7xylh2w2fp9zsgbd50150xp49p1ah"; depends=[]; }; - lintr = derive2 { name="lintr"; version="3.1.0"; sha256="1kb3jrzh1vn1fpj6phm2ni542yjgbbjmzgkn8w7khmh1sd9mj7pp"; depends=[backports codetools cyclocomp digest glue knitr rex xml2 xmlparsedata]; }; + lintr = derive2 { name="lintr"; version="3.1.1"; sha256="07c7h30nh1529wba8xkyg2sapj6r7jjckrxyzhrg2ssfwzs4dwdw"; depends=[backports codetools cyclocomp digest glue knitr rex xml2 xmlparsedata]; }; lipidmapsR = derive2 { name="lipidmapsR"; version="1.0.4"; sha256="19yrqd28z5dvpvi0igarmz9fpv08yx78221nzrwc8yxp6m1agkgc"; depends=[httr RJSONIO]; }; lipidomeR = derive2 { name="lipidomeR"; version="0.1.2"; sha256="1a9zi821mn7w18lg7psc9bagi3c5snvwqgda2f10rw5jff60fkfd"; depends=[BiocManager dplyr ggplot2 knitr limma reshape2 shadowtext stringr tableone tidyr]; }; liqueueR = derive2 { name="liqueueR"; version="0.0.1"; sha256="0rpjib0dz39la63gy9bw9gmdfq2fcx40y4y4wcb6ky41qcjdp1nd"; depends=[itertools]; }; @@ -12397,10 +12603,10 @@ in with self; { literanger = derive2 { name="literanger"; version="0.0.2"; sha256="0n39kr8gnps5vyifbafq736s05h939p7ys31s58zz3rg64k6l1bp"; depends=[cpp11]; }; litteR = derive2 { name="litteR"; version="1.0.0"; sha256="0lb8vl13w60dci4ygxqi2ap4ay1b2ywn8zmyigkn251sz9j2f4q9"; depends=[dplyr fs ggplot2 purrr readr rlang rmarkdown stringr tidyr tidyselect yaml]; }; litterfitter = derive2 { name="litterfitter"; version="0.1.3"; sha256="095jdrf0bfc465kabxnkdii1idqfnk4q7130kby0z499a88k1zpp"; depends=[plyr]; }; - littler = derive2 { name="littler"; version="0.3.18"; sha256="1lp6a62g3yhzr4pv9kynibv7k9pd546w6hifs1aficyxbyg4dgqq"; depends=[]; }; + littler = derive2 { name="littler"; version="0.3.19"; sha256="02b5lfdhajngs2l0fgy47zn7zn68qbx6m41cs5yzzi80qdfapkz1"; depends=[]; }; liureg = derive2 { name="liureg"; version="1.1.2"; sha256="1zhc5fs47whjvvwwiivykxfchzbjbldyvdmqh9rp7ccwba2q3956"; depends=[]; }; live = derive2 { name="live"; version="1.5.13"; sha256="1s6yrbwlc4wqszl2yvy1x6d93my18ba8sm8pwfy547cd1x055vig"; depends=[breakDown data_table dplyr e1071 forestmodel ggplot2 gower MASS mlr shiny]; }; - liver = derive2 { name="liver"; version="1.14"; sha256="1rbj8cjd1ir7qzs4981g3z648a9kaaq8bz0wggrmd38gpbvc2f8p"; depends=[class ggplot2]; }; + liver = derive2 { name="liver"; version="1.15"; sha256="0b786f9r3i2cskshzqgwkb2wx33xv82kl2rxfy047jda2y938lhc"; depends=[class ggplot2]; }; ljr = derive2 { name="ljr"; version="1.4-0"; sha256="0jby94ml8w6pwnxbmv6qfjww2myvvnn9vrmlqpdh71dhgp3z35py"; depends=[]; }; llama = derive2 { name="llama"; version="0.10.1"; sha256="1rw4lbz172hwb24r424qq86bw7m3xxl66k474wx1scpcrsix2nzw"; depends=[BBmisc checkmate data_table ggplot2 mlr parallelMap plyr rJava]; }; llbayesireg = derive2 { name="llbayesireg"; version="1.0.0"; sha256="0jhkmrjkqfm1flwsbpv6060j6g7cj4ngm0drvrlvsiqpni0k96mh"; depends=[coda ggplot2 llogistic MASS MCMCpack Rcpp rstan StanHeaders]; }; @@ -12412,10 +12618,9 @@ in with self; { lmPerm = derive2 { name="lmPerm"; version="2.1.0"; sha256="1ss2hcfxqvfq4n6hypv7jp0n0apby9payxzaswaysr5368lkidn3"; depends=[]; }; lmQCM = derive2 { name="lmQCM"; version="0.2.4"; sha256="1qblf2j51zr0ajf0zp0b0xhj9jclnhj4r6nsz3b5fqwj6h2cqkxv"; depends=[Biobase genefilter progress]; }; lmSubsets = derive2 { name="lmSubsets"; version="0.5-2"; sha256="1afdpcp3qiiprzc47cbckf49jd3f8ip81441ghgx0kfx54d1m305"; depends=[]; }; - lmap = derive2 { name="lmap"; version="0.1.1"; sha256="0d9blb8hgq2b3klczml74sgpkzbg8v4kn5mzvmip50s1bkk0brfz"; depends=[dplyr ggforce ggplot2 ggrepel nnet tidyverse]; }; lmboot = derive2 { name="lmboot"; version="0.0.1"; sha256="1v7a3vlv0187mpg3y3pj7f3pbk1v5n6amw732chy10vdw5nmfkwd"; depends=[evd]; }; lmds = derive2 { name="lmds"; version="0.1.0"; sha256="130azb0nc2wwxv0qi8v5s4rd02p9lc92zwn634pv7b8awbw81i65"; depends=[assertthat dynutils irlba Matrix]; }; - lme4 = derive2 { name="lme4"; version="1.1-34"; sha256="1bbaxkrd5m3d40y6jdyrdr4vsjyzkfixbqjwj6c8inmks98f2wp8"; depends=[boot lattice MASS Matrix minqa nlme nloptr Rcpp RcppEigen]; }; + lme4 = derive2 { name="lme4"; version="1.1-35.1"; sha256="0nzv1a22pfsf2ryw91h16ic4cb8y8g6wh0gx3msr7gv8dwwi3974"; depends=[boot lattice MASS Matrix minqa nlme nloptr Rcpp RcppEigen]; }; lmeInfo = derive2 { name="lmeInfo"; version="0.3.2"; sha256="11sqfb9bj7npngli4h0mzjd2pqjjkza2zmq4b9g2fhmm9r2b0zvd"; depends=[nlme]; }; lmeSplines = derive2 { name="lmeSplines"; version="1.1-12"; sha256="140l95c6yys2rdpyh7clqx4x4qfd4w36hpz6jkb2ygbh90ikzi2r"; depends=[nlme]; }; lmerPerm = derive2 { name="lmerPerm"; version="0.1.9"; sha256="1z69qr8nz89f4qbkyjs4n171yz9g6znxkgykrn0k3qbd3d7r9jds"; depends=[lmerTest]; }; @@ -12423,6 +12628,7 @@ in with self; { lmeresampler = derive2 { name="lmeresampler"; version="0.2.4"; sha256="0y9bawakxyqxdmx74jsyrg3mgiwb22h8pskp4wzv99fl2dp3bfhs"; depends=[dplyr forcats ggdist ggplot2 HLMdiag magrittr Matrix nlmeU purrr statmod tibble tidyr]; }; lmf = derive2 { name="lmf"; version="1.2.1"; sha256="1vrwshzaxq1vxin5f2hsp1vngn891y5nvvmhag26xbczc526gmac"; depends=[]; }; lmfor = derive2 { name="lmfor"; version="1.6"; sha256="0zhahfzphyywdnwkj8c94pxm86v296bvvszzcxp37xi4gayaknm6"; depends=[magic MASS Matrix nlme spatstat spatstat_geom]; }; + lmhelprs = derive2 { name="lmhelprs"; version="0.2.0"; sha256="03fxj1kkxahc8x1mnavgvdxjhy5kq2v75kns8g3qdhqpxcagx6qb"; depends=[]; }; lmls = derive2 { name="lmls"; version="0.1.0"; sha256="0gv7mawdpcqvvf3f61aa1l0yi32z9bs41i36ggn1nwga837g33k3"; depends=[generics]; }; lmm = derive2 { name="lmm"; version="1.4"; sha256="0ic3l311y7sq6q8kb5il3k115w1gpzy9kxx8fbjnx1zl2qsg10wf"; depends=[]; }; lmmot = derive2 { name="lmmot"; version="0.1.4"; sha256="1a8msh9yvvd7cv1zxlxdv8arlfvxqghxzcxls23v6ifl5jf4d1p3"; depends=[MASS maxLik]; }; @@ -12452,7 +12658,8 @@ in with self; { localICE = derive2 { name="localICE"; version="0.1.1"; sha256="1pyq6kdahsy9qa0jzmring48r0i9h4rkp8lxpf9afksgm1qn0c5z"; depends=[checkmate ggplot2]; }; localIV = derive2 { name="localIV"; version="0.3.1"; sha256="1z3q5hk6qfc1pzqdrxwm8y3am27648lfz66lm84bf8abifw4kk60"; depends=[KernSmooth mgcv rlang sampleSelection]; }; localModel = derive2 { name="localModel"; version="0.5"; sha256="12kx3bhcdllrkmhgbpx4i8k64amm39dihd6y4a5vvyhvjpbv0ssj"; depends=[DALEX ggplot2 glmnet ingredients partykit]; }; - localScore = derive2 { name="localScore"; version="1.0.8"; sha256="0sb4azqcrn3k87wb998bgxysr5g26x8nwk269rv65567ahi9gjv5"; depends=[Rcpp]; }; + localScore = derive2 { name="localScore"; version="1.0.11"; sha256="1m3bd6vh6xcd614b6jmnijiywrjdf44i7iwl5qp09n50831s8881"; depends=[Rcpp]; }; + localboot = derive2 { name="localboot"; version="0.9.1"; sha256="00xnkskk0mr075x908hl9cygdsqsa6wdwsg2gx01flz5dzw2xz5g"; depends=[Rcpp RcppEigen viridis]; }; localgauss = derive2 { name="localgauss"; version="0.41"; sha256="0cy8xawkph364828wpivhjikmlvaxhyrr3lv8a8xn21qxjri9mdy"; depends=[foreach ggplot2 MASS matrixStats]; }; localsolver = derive2 { name="localsolver"; version="2.3"; sha256="1d18rihzqf1f5j9agfp8jysll7lqk1ai23hkdqkn6wwxj442llv4"; depends=[]; }; locateip = derive2 { name="locateip"; version="0.1.2"; sha256="00l462bjl3lj5wiqr2mx08pcnfiv2jvnnfzwgrv5sh723kjxm4r3"; depends=[httr2 lifecycle readr stringr tibble]; }; @@ -12463,6 +12670,7 @@ in with self; { locits = derive2 { name="locits"; version="1.7.7"; sha256="13y313z0wmhrqfzgr3dbcmkdg6507p0wdvyxrnz1vm0rjwqv4911"; depends=[igraph wavethresh]; }; locpol = derive2 { name="locpol"; version="0.8.0"; sha256="1bip9x45kdnwc14rvk3ckzfbs32yc2wiid1ypmbbin4mk7364zxk"; depends=[]; }; locpolExpectile = derive2 { name="locpolExpectile"; version="0.1.1"; sha256="1phwcnbk1vmdk3qmfx2nd6crplly2lb8gb57yl67ky3c4sryh358"; depends=[expectreg lestat locpol matrixcalc quantreg]; }; + locuszoomr = derive2 { name="locuszoomr"; version="0.2.0"; sha256="0ihm23z3a0nnrq9hhn4aqmv349y03lpa3xya9zdwg4xpsdbd8hr1"; depends=[AnnotationFilter BiocGenerics cowplot dplyr ensembldb GenomeInfoDb GenomicRanges gggrid ggplot2 IRanges LDlinkR memoise plotly rlang rtracklayer zoo]; }; lodGWAS = derive2 { name="lodGWAS"; version="1.0-7"; sha256="0g5b44d3wb5hnx5l2n76myb1pc9ml3a052n1a4gvgqapa5as35s2"; depends=[rms survival]; }; loder = derive2 { name="loder"; version="0.2.1"; sha256="19l3rim2k3kd15i86gdbwlma63w68n1cjqbahqbrgck2irx9f6vy"; depends=[]; }; lodi = derive2 { name="lodi"; version="0.9.2"; sha256="16xqcza87gsqi6kzx0bdv3w9zyvvppjd20rq08lc8vb75nlkx1yb"; depends=[rlang]; }; @@ -12496,23 +12704,24 @@ in with self; { loglognorm = derive2 { name="loglognorm"; version="1.0.2"; sha256="0ha1b7hl86486v38ap9rm71wwvg95szqx5rb5q097vm6dl091qcr"; depends=[]; }; logmult = derive2 { name="logmult"; version="0.7.4"; sha256="1k9izgna3bfi8gvnpks85gj3zv3lp35991ml58q7pcqqr78giii2"; depends=[gnm qvcalc]; }; lognorm = derive2 { name="lognorm"; version="0.1.10"; sha256="021g3g7hyxcrj2lzqfjxj2ypcn8c6qminr0l6sdydynvjdjjv0pc"; depends=[Matrix]; }; - logr = derive2 { name="logr"; version="1.3.4"; sha256="041byyak5glk4wmbajfqckq5mrhjny4b2vflhlq3w6jhfp5j4lls"; depends=[common withr]; }; + logr = derive2 { name="logr"; version="1.3.5"; sha256="0h7a2pp1kar2l2qpga1f31sd7x4kidfjp0y478np9ban9nrxqrlm"; depends=[common withr]; }; logrx = derive2 { name="logrx"; version="0.3.0"; sha256="1qqy4hm0l6fijkzlxrzj1i65bdi3lf1p3mwd7jwm66yi9ynwkkbz"; depends=[digest dplyr lifecycle magrittr miniUI purrr rlang rstudioapi sessioninfo shiny stringi stringr tibble tidyr waiter]; }; - logspline = derive2 { name="logspline"; version="2.1.20"; sha256="1nsrgz9sh9qg2fj0x7k48lqhpgzq1z78jfz89ckzp5xm4r8lpgcb"; depends=[]; }; - lokern = derive2 { name="lokern"; version="1.1-10"; sha256="14prvpzq4qzbbac1vqklkrm60bswwjvm90i14dylsz1pdhy85g00"; depends=[sfsmisc]; }; + logspline = derive2 { name="logspline"; version="2.1.21"; sha256="0xqbk3h28gkx3haj7hdg314616x673cmg9ia148g0q9j3zqkqflf"; depends=[]; }; + lokern = derive2 { name="lokern"; version="1.1-10.1"; sha256="0l49ib9qnifpxacifxq5m9kmp3ralz9bdwv37zzazjbkm15zng4d"; depends=[sfsmisc]; }; lolR = derive2 { name="lolR"; version="2.1"; sha256="0lrmn9lzyyfr1y0i7qp6xfpdxyisbkajwg0jkrqkiw687psnh2rc"; depends=[abind ggplot2 irlba MASS pls robust robustbase]; }; lolliplot = derive2 { name="lolliplot"; version="0.2.2"; sha256="1rr0j0y298dmmllck11jq36glxczcsz6z7kw9290k77z75fi3vzi"; depends=[GenomicRanges grImport IRanges scales]; }; - lolog = derive2 { name="lolog"; version="1.3"; sha256="0lfb3d7rxssvzd70gixpmr8r8hcmxplg5yy181hdrvjsdc8w8jn4"; depends=[BH ggplot2 intergraph Matrix network Rcpp reshape2]; }; + lolog = derive2 { name="lolog"; version="1.3.1"; sha256="0hc95ff1radpc8q0xnrvhsgbhf902fhhhkjmj51sxds4mn5wdaj3"; depends=[BH ggplot2 intergraph Matrix network Rcpp reshape2]; }; lomb = derive2 { name="lomb"; version="2.1.0"; sha256="1hgf28bs5g07v7j05qxahs0q3j683401ssqk1r256pvk8x9j445l"; depends=[ggplot2 gridExtra plotly pracma]; }; long2lstmarray = derive2 { name="long2lstmarray"; version="0.2.0"; sha256="1d0w5qqqq3jak72ci7p12rcs4hjwmvwlaf47pibc6y9lax609kxw"; depends=[abind dplyr]; }; longCatEDA = derive2 { name="longCatEDA"; version="0.31"; sha256="0dji41lsknfwmgb2fczzm37dm97wvi45rh878w7pwlzwdh9vq8va"; depends=[]; }; longROC = derive2 { name="longROC"; version="1.0"; sha256="1fs11vqi4hy99d7shzzdvd6ic5gay6rh2027w6j0qpd04n8q88m8"; depends=[survival]; }; longRPart2 = derive2 { name="longRPart2"; version="0.2.3"; sha256="1vqcsxi6c4hqrpk3ns7yhghfryin1psxl38qkz2xz8cvyn58f685"; depends=[formula_tools ggplot2 MASS nlme rpart]; }; - longclust = derive2 { name="longclust"; version="1.3"; sha256="0j7imbdz9wir3rb7lkjnqhfsq8zlr8li31p865dmb4l6kfrl4qg4"; depends=[]; }; + longclust = derive2 { name="longclust"; version="1.5"; sha256="0x44arc5c3xnrby1c8f5q3lvbipjsm3gsair99ybrzs4j31sgcky"; depends=[]; }; + longevity = derive2 { name="longevity"; version="1.0.0"; sha256="01apxwslkyk8v6zqwaf0hl391mcgqi7nmkw3wal757d8dawvdnaj"; depends=[numDeriv Rcpp RcppArmadillo rlang Rsolnp]; }; longit = derive2 { name="longit"; version="0.1.0"; sha256="08d7pfwd2anx6cdgpyzrn5na3s75z6plbxb11774zcxyzg81rz69"; depends=[AICcmodavg missForest R2jags rjags]; }; longitudinal = derive2 { name="longitudinal"; version="1.1.13"; sha256="046w3xbr535c5jyd68adv42a7limxp1mv57b5w6w673w707lmw2p"; depends=[corpcor]; }; longitudinalANAL = derive2 { name="longitudinalANAL"; version="0.2"; sha256="1mvagvjmycnmk3bp02194k7qpwgj94lxzvv30dm0c8jmrhznyh4c"; depends=[dlm dplyr MASS tibble]; }; - longitudinalData = derive2 { name="longitudinalData"; version="2.4.5"; sha256="16jfmzdi6zw2s17iiw7yw3y9h9xz3kz4z9v2qfj0drs57m9dxgp4"; depends=[class clv misc3d rgl]; }; + longitudinalData = derive2 { name="longitudinalData"; version="2.4.5.1"; sha256="1x7n2jlmils9iw0ynq1hvixvrqzpzh37xi6wx0qawab1wm9igc5m"; depends=[class clv misc3d rgl]; }; longitudinalcascade = derive2 { name="longitudinalcascade"; version="0.3.2.6"; sha256="0ifslwmn71v6725xw3fa44qb01391dq8nsa95281x0crb5zrki8d"; depends=[dplyr ggplot2 lubridate rlang scales survival tidyr zoo]; }; longke = derive2 { name="longke"; version="0.1.0"; sha256="1fc34wrc7dn6j2nlwqgil5jqyvrp5nbwsbvppmkj78w7awla1f18"; depends=[bvls dplyr fdapace mvtnorm purrr tidyr]; }; longmemo = derive2 { name="longmemo"; version="1.1-2"; sha256="01rj5x9cgscsrakbx9155mbvs35fd3j484cfz5cds9vl521fjr3r"; depends=[]; }; @@ -12529,6 +12738,7 @@ in with self; { loon_ggplot = derive2 { name="loon.ggplot"; version="1.3.3"; sha256="15by2z3iy5p3frhb1y8rg17gbdds45b01qpcya210hia52b9vdlq"; depends=[cli ggmulti ggplot2 gridExtra loon patchwork rlang scales]; }; loon_shiny = derive2 { name="loon.shiny"; version="1.0.3"; sha256="1bv8a4rrrlf80r9pidjxaaql4rrm6gz13pjz1mii97q9s3xjn0id"; depends=[base64enc colourpicker gridExtra loon loon_ggplot shiny]; }; loon_tourr = derive2 { name="loon.tourr"; version="0.1.3"; sha256="1vdxqdsr89gzvsw9gx001rw416586lqyq0rp3g55n1lh6h9cy19d"; depends=[loon loon_ggplot MASS tibble tourr]; }; + lorad = derive2 { name="lorad"; version="0.0.1.0"; sha256="1pab66bngvcmk38id42ns6imdn014g14j6inrdkj39v6djy8xg0w"; depends=[]; }; lordif = derive2 { name="lordif"; version="0.3-3"; sha256="1yby9fvzdi1dzvzp6d6h144k1p9nfacd8l5bd66dmhnc8sp2nlx5"; depends=[mirt rms]; }; lorec = derive2 { name="lorec"; version="0.6.1"; sha256="0mgypd8awixh1lzbh5559br4k7vi3pfmwniqhgh68wc06sc6bn65"; depends=[]; }; lorem = derive2 { name="lorem"; version="1.0.0"; sha256="06pi088m1j60p3ckvz0mdfjlzqfdcjmzlalhy8pipnysv90ln5rm"; depends=[htmltools knitr]; }; @@ -12538,8 +12748,8 @@ in with self; { lotri = derive2 { name="lotri"; version="0.4.3"; sha256="1r24ldi8asa2n1w4czrwl5kp6b7xq27prrsxf23f436zfc4hhjvl"; depends=[crayon]; }; lowmemtkmeans = derive2 { name="lowmemtkmeans"; version="0.1.2"; sha256="08zhdw48rzw47yzhg4s37bkliyngxs46cyb57dvng1s3m0w0dhvi"; depends=[Rcpp RcppArmadillo]; }; lowpassFilter = derive2 { name="lowpassFilter"; version="1.0-2"; sha256="1ic4xissqm7cq951yw7cf74a520mnm34yr6mlw1byhn5w4nzbk2x"; depends=[Rcpp]; }; - lpSolve = derive2 { name="lpSolve"; version="5.6.19"; sha256="06sqjj69gp2ja2hgzfxii00js6pjbmhyp07a9jya5sy6cjgb9ma9"; depends=[]; }; - lpSolveAPI = derive2 { name="lpSolveAPI"; version="5.5.2.0-17.10"; sha256="1f8hv89iw8vfnc3f5a73575aqmqcmj5qbmamjklsq79cscjyzdsc"; depends=[]; }; + lpSolve = derive2 { name="lpSolve"; version="5.6.20"; sha256="1nr1vjz6ma42kxbcay4g9j30r9srkbw79f06sdnc68sid2h0dziz"; depends=[]; }; + lpSolveAPI = derive2 { name="lpSolveAPI"; version="5.5.2.0-17.11"; sha256="191zjgyap3kcsvh8fygqqyr9p0agbzm160fzynnpaxf19yp6r3dh"; depends=[]; }; lpacf = derive2 { name="lpacf"; version="1.0.1"; sha256="0lg1r7pjg9f5msvjqaq93v43mssvq7jqgv2canhp3wybnmcw0p8v"; depends=[locits wavethresh]; }; lpc = derive2 { name="lpc"; version="1.0.2.1"; sha256="1g1dzm7pcrbrdk1dmhbdhj58j69dzar41al3i8q4gysf3adqzsvv"; depends=[]; }; lpcde = derive2 { name="lpcde"; version="0.1.1"; sha256="0jnwh677icjx781c330qmm8bz95470rvzggi5rygf0kvw9zr1biv"; depends=[combinat ggplot2 MASS Matrix mvtnorm purrr Rcpp RcppArmadillo]; }; @@ -12550,15 +12760,15 @@ in with self; { lpirfs = derive2 { name="lpirfs"; version="0.2.3"; sha256="1ncg341xv8bf6jl8m6aqhd2ds8lmi4wf0gxj9fnbi5gbxpbqk50y"; depends=[doParallel dplyr foreach ggplot2 gridExtra lmtest plm Rcpp RcppArmadillo sandwich]; }; lpl = derive2 { name="lpl"; version="0.11"; sha256="11w2cr5n72p4wds5dm039rdinhvxjfqvrmisksfpf47jddjxhm42"; depends=[MASS survival]; }; lpme = derive2 { name="lpme"; version="1.1.3"; sha256="1ch11cwjci98m7952p9wdsh9fj5y1mjya6ayq0q4wmbm824qfpzb"; depends=[decon flexmix locpol Rcpp RcppArmadillo]; }; - lpridge = derive2 { name="lpridge"; version="1.0-8"; sha256="0jk4l95z9rcdqkc8lpp4sf1mg2dqj67rhqw1iafrxy5lx4jfaqqx"; depends=[]; }; - lqmix = derive2 { name="lqmix"; version="0.1.0"; sha256="1d3ng7xyb2pf5hbilz44k5gmc91zcwzcr3bqp10c6k7s4mhc2kk5"; depends=[quantreg Rdpack]; }; + lpridge = derive2 { name="lpridge"; version="1.1-0"; sha256="1zc0jn7j15yb3qj5sxs0nnj8knrzhm8899kyps6fp10vm2wwdnd1"; depends=[]; }; + lqmix = derive2 { name="lqmix"; version="1.0"; sha256="1pk156gckprp3nvqbhxbbr77njj2gcfmkd8fh8jmzb3bhkf0nlj2"; depends=[diagram doParallel foreach quantreg Rdpack]; }; lqmm = derive2 { name="lqmm"; version="1.5.8"; sha256="1ywiyq6k8fb1ffild1r0rglwc6a5sv1kqfqam28337bbxppdxv8i"; depends=[nlme SparseGrid]; }; lqr = derive2 { name="lqr"; version="5.0"; sha256="1qhzsr6sls9f49aa6m72qhffzxqvsvzqlx47h29z8mm37bd74v8b"; depends=[MASS MomTrunc numDeriv quantreg spatstat_geom]; }; lrd = derive2 { name="lrd"; version="0.1.0"; sha256="08g7i6y2isq2vq53byxh58908na4jghka20dznk19lc5mcfpkw97"; depends=[knitr]; }; lrequire = derive2 { name="lrequire"; version="0.1.3"; sha256="03c8h9v2xhlv7bj5jv117a27gaqaly2kdxs9zyihsm9yh9rg3d79"; depends=[]; }; lrgs = derive2 { name="lrgs"; version="0.5.4"; sha256="0mf6wqlv21z68w81hvpmhgngvdsklf3x2678d9c9lxfmqmpv4a7y"; depends=[mvtnorm]; }; lrmest = derive2 { name="lrmest"; version="3.0"; sha256="1yddkgza672z9y0ipgl92pg9prhmr387zsqf0qbi9k2yzfz2vvs6"; depends=[MASS psych]; }; - lrstat = derive2 { name="lrstat"; version="0.2.0"; sha256="1pfg053w8y0ljld0c2cjjr1xrhbq1wx4khabfqjb07vayhqr3m32"; depends=[mvtnorm Rcpp]; }; + lrstat = derive2 { name="lrstat"; version="0.2.2"; sha256="0a3gfbr92nhcs9mvig1mfa6d22sarc9845mgrncym8yllv67avaj"; depends=[mvtnorm Rcpp]; }; lsa = derive2 { name="lsa"; version="0.73.3"; sha256="16k1g0kh3yaw7azg76aqf3hn3b6jgqg92xx0syai8l0my9ci2zzh"; depends=[SnowballC]; }; lsasim = derive2 { name="lsasim"; version="2.1.4"; sha256="197grlgxvilw43lyjprmik0pjgns979xksi4pv422h9x9fwwyqpn"; depends=[cli mvtnorm polycor]; }; lsbclust = derive2 { name="lsbclust"; version="1.1"; sha256="1pbai58pfvhfcrd0nj13d54vrn9wrx2xapqhgqa1pkrjwbk5amj7"; depends=[clue doParallel foreach ggplot2 gridExtra mvtnorm plyr Rcpp reshape2]; }; @@ -12583,7 +12793,7 @@ in with self; { ltmix = derive2 { name="ltmix"; version="0.2.1"; sha256="03i0gr79xiqnny57g0y9w5dfpw51gqhrkff2rh8rggsni20pzm1h"; depends=[gtools pracma]; }; ltmle = derive2 { name="ltmle"; version="1.3-0"; sha256="1bcahkykwwn67zvi5b0aw5awd48yq8ab8y9j3yw8f5mqdbfx0cgv"; depends=[Matrix matrixStats]; }; ltsa = derive2 { name="ltsa"; version="1.4.6"; sha256="10wmw9r00400ng2zlysd8jqgypjclshxj83x32002j2a9cz4f186"; depends=[]; }; - ltsk = derive2 { name="ltsk"; version="1.1.0"; sha256="1gz048yg9hm40xyxganpza48dpmi43dxm5j5myysyxzi07p58l8n"; depends=[]; }; + ltsk = derive2 { name="ltsk"; version="1.1.1"; sha256="01f0jvm4fihssgfhb062wlqqvrfdikixycxfz93dkqahjmrjz5dl"; depends=[]; }; ltsspca = derive2 { name="ltsspca"; version="0.1.0"; sha256="0hgl2zd8y01z8mhnqg1hlv1l7klpwhwk7q8b99pw9vgnh1f2gnfs"; depends=[pracma Rcpp RcppArmadillo]; }; ltxsparklines = derive2 { name="ltxsparklines"; version="1.1.3"; sha256="0f2ycgjdw9z9m730wh3k362aq71mwmxhnsxhcjxhj8c4lknr50br"; depends=[]; }; lubridate = derive2 { name="lubridate"; version="1.9.3"; sha256="1zvzycng2hsks9d7552nb93abzjrs43c975rc16s3c1is8318vib"; depends=[generics timechange]; }; @@ -12612,7 +12822,7 @@ in with self; { mBvs = derive2 { name="mBvs"; version="1.6"; sha256="14ds64mm0nrrpfr01kmx5fsvl0kqzhiq8qgmzgmyzs7c4hcs3050"; depends=[]; }; mDAG = derive2 { name="mDAG"; version="1.2.2"; sha256="0k85sl0jmpcpiz92cz6x3kd8jc6yyfv9z4wm1kyaikcf5q4qlad4"; depends=[bnlearn logistf mgm nnet pcalg Rcpp RcppArmadillo]; }; mExplorer = derive2 { name="mExplorer"; version="1.0.0"; sha256="1563d9r7f25vw5vsph21z3dwz9n40dpaiyx28ay1bbp5i1x2l3rb"; depends=[nnet qusage]; }; - mFD = derive2 { name="mFD"; version="1.0.5"; sha256="12m40ggz47bmccvpch21swrq2lddi4zvb199waw2csjlhixr60md"; depends=[ade4 ape betapart cluster dendextend FactoMineR gawdis geometry ggplot2 ggrepel Hmisc patchwork reshape2 rstatix vegan]; }; + mFD = derive2 { name="mFD"; version="1.0.6"; sha256="1n5jli7q2a6b1ncnj9ppwh5yfviq7jlhf5f53r5hgw7xhipazxr2"; depends=[ade4 ape betapart cluster dendextend FactoMineR gawdis geometry ggplot2 ggrepel Hmisc patchwork reshape2 rstatix vegan]; }; mFDP = derive2 { name="mFDP"; version="0.1.0"; sha256="0mvqg3qpv1zcj5lsk36dw4qs75i66cmv4qazpmsilhfh0v46p2dx"; depends=[]; }; mFLICA = derive2 { name="mFLICA"; version="0.1.5"; sha256="0znjp95ifwqpqwrnlcb77r1cdwpvbpql6ggnck018xddc8x40hzv"; depends=[dtw ggplot2]; }; mFilter = derive2 { name="mFilter"; version="0.1-5"; sha256="0anc93mciq8j64knd0i38sfgv10w1gd375wnfzn1fq8sj3lby7kb"; depends=[]; }; @@ -12622,7 +12832,7 @@ in with self; { mMPA = derive2 { name="mMPA"; version="1.2.0"; sha256="0g4zjknz52fpk7f436j95aw93aa8q2jwcrb1pqkm294kr276nnd9"; depends=[]; }; mRMRe = derive2 { name="mRMRe"; version="2.1.2.1"; sha256="1nbz2rq6fzzy01vhizpszw47c8yha1rvks6hf5dh0dx4h8p3jg6m"; depends=[igraph survival]; }; mRc = derive2 { name="mRc"; version="0.1.0"; sha256="0v8kyvgliss8lxbzcikd3vhmmq2ysl1fp87r37r5f8w9xsx5ba9z"; depends=[]; }; - mRpostman = derive2 { name="mRpostman"; version="1.1.0"; sha256="18q75hymx13q0vkvfanrqz88j1w482j343sncvhqfljhlyff0m0b"; depends=[assertthat base64enc curl magrittr R6 rvest stringi stringr xml2]; }; + mRpostman = derive2 { name="mRpostman"; version="1.1.2"; sha256="0ss00mxk0s3lpxrhy3hszx6hmf7qiycl8vdif1fdzxz5yglki4xa"; depends=[assertthat base64enc curl magrittr R6 rvest stringi stringr xml2]; }; mSTEM = derive2 { name="mSTEM"; version="1.0-1"; sha256="0mh09mqqpq9k8jrxs9d39009idld3b4y98ik75czdy580jmdg7mm"; depends=[doParallel foreach latex2exp]; }; mSigTools = derive2 { name="mSigTools"; version="1.0.7"; sha256="11xjrfgifh491bzrzh1vw7sawdrlj1yb1yfvj09gjggszn9wn40r"; depends=[clue philentropy quadprog sets]; }; mSimCC = derive2 { name="mSimCC"; version="0.0.3"; sha256="1dnyrc4hxdimqkk8rm57z74ihmlzmg8plx30ch7rf1z86i33hnjy"; depends=[doParallel foreach]; }; @@ -12635,7 +12845,7 @@ in with self; { macleish = derive2 { name="macleish"; version="0.3.9"; sha256="06r97fsasjj7qdm4p8yhvi2hfs1qy35xs0ay9i3bv5k09z5zfia7"; depends=[dplyr etl lubridate phenocamr readr rvest sf stringr xml2]; }; maclogp = derive2 { name="maclogp"; version="0.1.1"; sha256="1fbwv4j4mb7zkyc5vspq7k17pwr49dbvqkssda54ggcf1nbqykmb"; depends=[BMA plot_matrix rlist]; }; macrocol = derive2 { name="macrocol"; version="0.1.0"; sha256="1qz5hsxg4ga4blbrakn4bia2l4lh6h5kh4ix7vnm7rl2f7yk4r5a"; depends=[httr lubridate openxlsx R_utils readxl]; }; - macrosyntR = derive2 { name="macrosyntR"; version="0.2.19"; sha256="1lydhr7rnh8kyj0pz9bfpjczsnxpy0z8gzphi7qc0s639nw1z8ay"; depends=[dplyr ggplot2 ggthemes igraph reshape2 stringr tidyr]; }; + macrosyntR = derive2 { name="macrosyntR"; version="0.3.3"; sha256="1q9fbm36059r007cd80hlg662gwqfy17hqdakgbv6lgv9gy6ymif"; depends=[dplyr ggplot2 igraph reshape2 rlang stringr tidyr]; }; mactivate = derive2 { name="mactivate"; version="0.6.6"; sha256="0qqhniq0wdhazhfiiw7g2b0v8jkc8jl2m117k1c6gnajg8gs1ymn"; depends=[]; }; maczic = derive2 { name="maczic"; version="1.0.0"; sha256="02papbs1pw470cxzwcgvn8px5hvvg1p8zpmcrk5zqmlpzgjsdx2l"; depends=[BB emplik MASS mathjaxr mediation pscl sandwich survival]; }; mada = derive2 { name="mada"; version="0.5.11"; sha256="1cqjkk8rr8in12hms6qvm2yrgmnr9xwg0z6cc0gnzazz0rijj8n1"; depends=[ellipse metafor mvmeta mvtnorm]; }; @@ -12645,16 +12855,14 @@ in with self; { madness = derive2 { name="madness"; version="0.2.8"; sha256="1a0jcvy7xq654hcjv0nsjfhwh9fgxzhk7grjy209mgzmkivdinpq"; depends=[expm Matrix matrixcalc]; }; madr = derive2 { name="madr"; version="1.0.0"; sha256="0lzg75kphz4a0w6n0jbsq87g72jvrbkyas4j813mryq2nv4lmsl4"; depends=[]; }; madrat = derive2 { name="madrat"; version="3.6.4"; sha256="03wkzpr0nx50li0g69fn2fznfh6nbg4sdpymsilx3387v50vc9vs"; depends=[callr digest igraph magclass Matrix pkgload renv stringi withr yaml]; }; - mads = derive2 { name="mads"; version="0.1.6"; sha256="0nz1fg3gyj72k6dpkjnwqjvps0inv1qgk5vlc8ycj3k720qcsd81"; depends=[mrds]; }; - madshapR = derive2 { name="madshapR"; version="1.0.2"; sha256="04nigwlvx56fd22l6rs1jhyh270flj173w6wrspsq3gmnl9k468s"; depends=[bookdown crayon dplyr DT fabR forcats fs ggplot2 haven janitor knitr lifecycle lubridate readr rlang stringr tidyr tidytext]; }; + madshapR = derive2 { name="madshapR"; version="1.0.3"; sha256="1dnw1mpby6kmfmya2vrsrk7lx9f1dh8sp7rwp29kjnm6j6inzm60"; depends=[bookdown crayon dplyr DT fabR forcats fs ggplot2 haven janitor knitr lifecycle lubridate readr rlang stringr tidyr tidytext]; }; madsim = derive2 { name="madsim"; version="1.2.1"; sha256="11gfyimbz363p5xy1x6rsz5fcgzcr55myc5aaz5lazjkcnfn17aq"; depends=[]; }; magclass = derive2 { name="magclass"; version="6.10.0"; sha256="050nbnwv9m8ya2sbccygj8k05ry8758rxnj1r988chjycc3c21wb"; depends=[abind data_table]; }; magi = derive2 { name="magi"; version="1.2.2"; sha256="0pj45j5qy3gqcl1v95cv2bmxsiimyz87wprf6g1v5sgb90fg2yjp"; depends=[BH deSolve gridBase gridExtra Rcpp RcppArmadillo roptim]; }; magic = derive2 { name="magic"; version="1.6-1"; sha256="0xkrrg5qk62pfqx0avijdjaljzslpwd0hv2m52qnqwrbx5xfqyfa"; depends=[abind]; }; magicLamp = derive2 { name="magicLamp"; version="0.1.0"; sha256="1nfcnbqd6vawz8l3vgkbhmm462xdvaa4pn6axzmz8hl05xv2k3cv"; depends=[httr tibble]; }; - magicaxis = derive2 { name="magicaxis"; version="2.2.14"; sha256="1gqnivn6qjmf7axdi0pff6a40clklbipcr6qvm6ivzqbqhpbcb7v"; depends=[celestial mapproj MASS plotrix RANN sm]; }; magicfor = derive2 { name="magicfor"; version="0.1.0"; sha256="07l33fczr1x42sfxrsqq4q6r65sdflin6l8f5cgclnvx1858jdip"; depends=[]; }; - magick = derive2 { name="magick"; version="2.8.1"; sha256="13j55dwvcqbyqgx0c6vj9knqrz25pc2xz19f22b2gm0p307d3z6q"; depends=[curl magrittr Rcpp]; }; + magick = derive2 { name="magick"; version="2.8.2"; sha256="15ja7f46f77a67wmzqfaxvhmvvzgb9yj92p2if5di7i61vlmnid1"; depends=[curl magrittr Rcpp]; }; magickGUI = derive2 { name="magickGUI"; version="1.3.1"; sha256="14jgf4bkpk8lsv3v5843mnkd241f5gpqyg5cqw7xls30d2vs2r8p"; depends=[magick]; }; magmaR = derive2 { name="magmaR"; version="1.0.2"; sha256="19jnzggjqnlv3gnc3zjfmphkwjy1y5xp6bgc2nnr6mwfs4rfxscn"; depends=[crul jsonlite]; }; magree = derive2 { name="magree"; version="1.1"; sha256="0q0v1mx4k1hry0l21611z9jx967l89xpjddvw2v1v9c3kl11kfi6"; depends=[]; }; @@ -12669,16 +12877,16 @@ in with self; { makePalette = derive2 { name="makePalette"; version="0.1.2"; sha256="0ma8dm7x07wwm94ginsah778lkwqb3nlqpydmn7g22zvbariail7"; depends=[cluster prismatic terra]; }; makeProject = derive2 { name="makeProject"; version="1.0"; sha256="09q8xa5j4s5spgzzr3y06l3xis93lqxlx0q66s2nczrhd8nrz3ca"; depends=[]; }; makedummies = derive2 { name="makedummies"; version="1.2.1"; sha256="062rvijhy2dybpgxzp44cg46bfyb8lp9yasv3mhskhf3yg717sqp"; depends=[tibble]; }; - makeit = derive2 { name="makeit"; version="1.0.0"; sha256="11v8dd1c3gw2vrnqwxr2q90vdws46bsja9fh89pn5a3qh6p09vz7"; depends=[]; }; + makeit = derive2 { name="makeit"; version="1.0.1"; sha256="1x0dwffzz1i88h9mqcigihm52fi47439jmd1v9712sf3h7hf5iiy"; depends=[]; }; makemyprior = derive2 { name="makemyprior"; version="1.1.0"; sha256="1h5v1n6b318j36w1c225wq8rdvr3dwsy421x43z0ff9ixidhylbv"; depends=[ggplot2 MASS Matrix rlang shiny shinyBS shinyjs visNetwork]; }; makepipe = derive2 { name="makepipe"; version="0.2.1"; sha256="0mhabnmpvjamgam63nrjdimn94azn8crafr9jcwsr08lzlbv9kmv"; depends=[cli nomnoml R6 roxygen2]; }; maketools = derive2 { name="maketools"; version="1.2.5"; sha256="0168y16kn98781k54d6qbb73828lggg0l04s69sf3fgy6s6scl3q"; depends=[sys]; }; makeunique = derive2 { name="makeunique"; version="1.0.0"; sha256="0pf8cl6p3q9fzj20s4gm8amw29291xf6711v0pmp0rcnwva1zav0"; depends=[]; }; - malan = derive2 { name="malan"; version="1.0.2"; sha256="0qwf0r2gwpb93gzvyp8vaw7j6rhghr6nbrfp8xw876n5j5b9jhj3"; depends=[dplyr igraph magrittr Rcpp RcppArmadillo RcppProgress tibble tidygraph]; }; + malan = derive2 { name="malan"; version="1.0.3"; sha256="1m11rxzmvkdvpkcnhjwwgrhkmbylwjpqnn47zyy5wna66c3zzvr6"; depends=[dplyr igraph magrittr Rcpp RcppArmadillo RcppProgress tibble tidygraph]; }; malani = derive2 { name="malani"; version="1.0"; sha256="1jps28gfkiysr356ackxf1my5xz6rpx3a2bv68pziy2614hrqbs9"; depends=[e1071]; }; - malariaAtlas = derive2 { name="malariaAtlas"; version="1.5.0"; sha256="07dwmnfzx2883yxy3klwyv9gyglgjf976w34bb8x2qna2aw9hhz4"; depends=[dplyr future_apply ggplot2 gridExtra httr jsonlite lifecycle lubridate ows4R rlang sf stringr terra tidyr tidyterra xml2]; }; + malariaAtlas = derive2 { name="malariaAtlas"; version="1.5.1"; sha256="1fr1dwlv6q8fb0m0jccd2hymi4m62kgjxbkras07zmsk8sci5zmn"; depends=[dplyr future_apply ggplot2 gridExtra httr jsonlite lifecycle lubridate ows4R rlang sf stringr terra tidyr tidyterra xml2]; }; malaytextr = derive2 { name="malaytextr"; version="0.1.3"; sha256="0z5q0hl07yh528xgvzc820rdaaihgilm6ql934jh0ciswil022sm"; depends=[dplyr magrittr rlang stringr]; }; - maldipickr = derive2 { name="maldipickr"; version="1.1.1"; sha256="16ra6li4b725cpnqmm5bgmr8r38x0jnjrsc836v83h5lr8yjz3l3"; depends=[dplyr magrittr MALDIquant readBrukerFlexData rlang tibble tidyr tidyselect]; }; + maldipickr = derive2 { name="maldipickr"; version="1.3.0"; sha256="1k534c8x3ygf44r7q1nybd8b6gl3pw0h0r6ddwc35jxq1vmxx6qi"; depends=[dplyr lifecycle magrittr MALDIquant readBrukerFlexData rlang tibble tidyr tidyselect]; }; mallet = derive2 { name="mallet"; version="1.3.0"; sha256="1g54nq01qgmi25lgdpsw044nyschcj7wnaaqhj72hax8yl4s8vqi"; depends=[checkmate rJava]; }; malvinas = derive2 { name="malvinas"; version="0.1.0"; sha256="1afgyrn7cslrd4qxd9k5l3kyhdi99vx06360yhb9n005xfmd65kf"; depends=[]; }; managelocalrepo = derive2 { name="managelocalrepo"; version="0.1.5"; sha256="180b7ikas1kb7phm4l2z1d8wi45wi0qyz2c8rl8ml3f71b4mlzgc"; depends=[assertthat stringr]; }; @@ -12696,9 +12904,11 @@ in with self; { manydata = derive2 { name="manydata"; version="0.8.3"; sha256="11rmdj6wqjcq1lll8s38qya4ahjfx88jybkif1791fhw3l0nmkx3"; depends=[dplyr ggplot2 httr janitor jsonlite messydates plyr purrr remotes rlang stringr tibble tidyr usethis zoo]; }; manymodelr = derive2 { name="manymodelr"; version="0.3.7"; sha256="0kc4y9i21qkcg0pkwlas2mm06s54s70w5ybw4215qjwiy6xax268"; depends=[caret dplyr e1071 ggplot2 lme4 Metrics]; }; manymome = derive2 { name="manymome"; version="0.1.13"; sha256="1izyi7hx266f7zj4rlpm9ijwj3yajlqrvdnc9899nvzl6g2whgqc"; depends=[boot ggplot2 igraph lavaan MASS pbapply]; }; - manynet = derive2 { name="manynet"; version="0.2.3"; sha256="0kc567jc0mc4v71c0ymny5zhraja6xnrcviqgm75pvzyhs13q605"; depends=[dplyr ggplot2 ggraph igraph network tidygraph]; }; + manymome_table = derive2 { name="manymome.table"; version="0.2.0"; sha256="1rdlm95j6k490dwma6nsy7qawg03k7bfcidq2yllvn47n1bd96ya"; depends=[flextable manymome]; }; + manynet = derive2 { name="manynet"; version="0.3.0"; sha256="1mp8bmangw5bczwhj8rfa6dyky1c6i5dm1d8qnk6vgl36d1iacb8"; depends=[dplyr ggplot2 ggraph igraph network tidygraph]; }; maotai = derive2 { name="maotai"; version="0.2.5"; sha256="1axr16xs366011vkx3j8mljq98923kscz8wrl9m1zprw3pqif6jr"; depends=[cluster dbscan fastcluster labdsv Matrix pracma RANN Rcpp RcppArmadillo RcppDist Rdpack RSpectra Rtsne shapes]; }; mapSpain = derive2 { name="mapSpain"; version="0.8.0"; sha256="0nfik6a7qmwb62xq4l6z9jj12qiihk4mfqn545nw2pvkmszcyhjz"; depends=[countrycode giscoR rappdirs sf]; }; + mapStats = derive2 { name="mapStats"; version="3.1"; sha256="1jf5dgf9i9339xzk9fbipy9b2fkwdv6sy1ciif921snwj176zck9"; depends=[classInt colorspace Hmisc lattice RColorBrewer reshape2 sf sp survey ttutils]; }; mapaccuracy = derive2 { name="mapaccuracy"; version="0.1.1"; sha256="0bw69w2875z8s6ywifyx5yphzfrcv2nfbqbz1hy90x93iw6v5y0n"; depends=[assertthat]; }; mapbayr = derive2 { name="mapbayr"; version="0.10.0"; sha256="07bl6vp86c7ydwln130d2ccvizwjvd7zq1l4ifl1nspbh6p0i359"; depends=[dplyr ggplot2 magrittr mrgsolve progress purrr rlang stringr tidyr]; }; mapboxapi = derive2 { name="mapboxapi"; version="0.5.3"; sha256="0xb75j7k2pl0c726wamv15ask5xqajmwxf0b0ssy6y1xjb46frar"; depends=[aws_s3 curl dplyr geojsonsf httr jpeg jsonlite leaflet magick png protolite purrr raster rlang sf slippymath stringi tidyr units]; }; @@ -12712,40 +12922,40 @@ in with self; { mapi = derive2 { name="mapi"; version="1.0.5"; sha256="1yljvapzkb43i2sbqsmn5aqp95hm8gjkz8m41x1chwyfddrzjsbw"; depends=[data_table pbapply Rcpp sf]; }; mapiso = derive2 { name="mapiso"; version="0.3.0"; sha256="11mrvk45znna6irsd8mmkk8h63dm6wjlpsy0h8p3bldvk5mc8fi9"; depends=[isoband sf]; }; maplegend = derive2 { name="maplegend"; version="0.1.0"; sha256="1jngbampps5gn3xdy292466qq4nhx0k7c08mams84xmmb9jbq0h0"; depends=[]; }; - mapme_biodiversity = derive2 { name="mapme.biodiversity"; version="0.4.0"; sha256="026q3sjsm1yzw3iixjx3cga00f239spbss33wlxhdc4dapd434hm"; depends=[curl dplyr furrr httr magrittr progressr purrr R_utils rvest sf stringr terra tibble tidyr tidyselect]; }; - mapmisc = derive2 { name="mapmisc"; version="2.0.1"; sha256="0rj972xsl5jv7pa5q3nnqply0ivrdk7myfdxsw3hhqfsvjc8nk43"; depends=[geosphere terra]; }; - mapping = derive2 { name="mapping"; version="1.4"; sha256="1d8w6gzibbw3sqwgqcj7ww6bw95mlivpncz60fhn130qlmg1d0p4"; depends=[cartography curl dplyr geojsonio ggplot2 htmltools httr jsonlite leaflet leafpop leafsync mapview s2 sf stringi stringr tmap tmaptools viridisLite]; }; + mapme_biodiversity = derive2 { name="mapme.biodiversity"; version="0.5.0"; sha256="0md2glm5zqqsf0vqxj14ln2l7cxx5cfg3v7kkikdx1nn38l6ixaz"; depends=[curl dplyr furrr httr magrittr progressr purrr R_utils rvest sf stringr terra tibble tidyr tidyselect]; }; + mapmisc = derive2 { name="mapmisc"; version="2.0.3"; sha256="0pddmc76lb3wxyq49b7kjipyr2gpfsdix0vz9cj13aibljxy49xw"; depends=[geosphere terra]; }; + mapping = derive2 { name="mapping"; version="1.4.1"; sha256="0c1kghgzkbicy35dgwbyw6085glagdnck4dkcj7z89i3mgrjm17s"; depends=[cartography curl dplyr geojsonio ggplot2 htmltools httr jsonlite leaflet leafpop leafsync mapview s2 sf stringi stringr tmap tmaptools viridisLite]; }; mappings = derive2 { name="mappings"; version="0.1"; sha256="1f7m6nbdzdcxsk4m8rh8fzrck8pzxl2lgfz5c6wramwmp8rxczzb"; depends=[]; }; mapplots = derive2 { name="mapplots"; version="1.5.2"; sha256="064a3jc7p4wh5x8rxmjap6kqkg19zfkq8ac820d9sm35d0fia3pd"; depends=[]; }; mappoly = derive2 { name="mappoly"; version="0.3.3"; sha256="0rfp4b5flc4ip2c6z6wq4yyqj99jnl1vrwv6277vhlfpv91fxjr1"; depends=[cli crayon dendextend dplyr fields ggplot2 ggpubr ggsci magrittr plot3D plotly princurve Rcpp RcppParallel RCurl reshape2 rstudioapi smacof vcfR zoo]; }; mappp = derive2 { name="mappp"; version="1.0.0"; sha256="19c8575w9r1w32hqwdmmggh21lqahy73vw8g5qbxxna6r77zg5c7"; depends=[memoise parallelly pbmcapply progress purrr rlang]; }; mapproj = derive2 { name="mapproj"; version="1.2.11"; sha256="0z9lhv006pw4mwqlghvgvv66ga958bs6n1k6fmqjdpirr4f20bfv"; depends=[maps]; }; - maps = derive2 { name="maps"; version="3.4.1"; sha256="0034114pdakxcx480b45qy9j4vq1v5ss961ssy92w4nqiqhsb4z6"; depends=[]; }; + maps = derive2 { name="maps"; version="3.4.2"; sha256="032b8348k8vjhwj0d58v7akjkvfpvqzfva0nl7acyy8pky47prak"; depends=[]; }; mapsFinland = derive2 { name="mapsFinland"; version="0.2.2"; sha256="13kq22z0dpsq9dk6ni2rkgbkcxccr6dby3mnc3m5sj58am48zyky"; depends=[]; }; mapsPERU = derive2 { name="mapsPERU"; version="2.0.0"; sha256="09z9hjpms039m8sjpb91q1f5knnncbyzciw7g5mhw11f9xsijj4k"; depends=[tibble]; }; mapsRinteractive = derive2 { name="mapsRinteractive"; version="2.0.1"; sha256="0v2ijx54nyfgnxh77d47lsflvqfcbdzza3finfx3z1dwl6sdd056"; depends=[gstat terra]; }; mapsapi = derive2 { name="mapsapi"; version="0.5.4"; sha256="0gk5k0zf3yzq7rzw17j7ph3fzpf6q6j777ri242wmi75xzkamrsc"; depends=[bitops httr RgoogleMaps sf stars xml2]; }; mapscanner = derive2 { name="mapscanner"; version="0.0.6"; sha256="017m33v2523rjmspfbzq1xnb3clzmbn4p1qqzp480j71wy5c1dry"; depends=[cli curl fs glue magick magrittr memoise pdftools png purrr raster Rcpp reproj RNiftyReg sf slippymath tibble]; }; - mapsf = derive2 { name="mapsf"; version="0.7.1"; sha256="0lkzn1nm7rwzag0shik4hqcxvsdsj1xqkfy68l2qgdr1qxgvldc6"; depends=[classInt Rcpp sf]; }; + mapsf = derive2 { name="mapsf"; version="0.8.0"; sha256="0fj7s180i1pxk0j5ysfxm9zm3pw6j5whpxjyk9dcw8mfiby387gl"; depends=[classInt maplegend s2 sf]; }; maptiles = derive2 { name="maptiles"; version="0.6.1"; sha256="1pwmwibqazzwgn0lbljlsg29ib0zvhcf7yd8080a84gh08qwb8a3"; depends=[curl png sf slippymath terra]; }; maptpx = derive2 { name="maptpx"; version="1.9-7"; sha256="0f85i3vwr5rvz261z6j7x15gsahxrq4qqddfb0qyhypgihvwh857"; depends=[slam]; }; maptree = derive2 { name="maptree"; version="1.4-8"; sha256="1x35nk4fi2b62krcvcv187n5sbqrgvw4pbm7r19ps3jlanpi5ksm"; depends=[cluster rpart]; }; mapview = derive2 { name="mapview"; version="2.11.2"; sha256="1c18fc8r5anc9wn541dzhchys2pmxc7pp797bq065brs5drpyka1"; depends=[base64enc htmltools htmlwidgets lattice leafem leaflet leafpop png raster satellite scales servr sf sp]; }; maq = derive2 { name="maq"; version="0.3.1"; sha256="1b835hw79kkmvmpln7mszczdhhqh5q371f2jviqabjl58b6wcsyd"; depends=[Rcpp]; }; mar1s = derive2 { name="mar1s"; version="2.1.1"; sha256="1ljkvgxrramfx1rnp2rg6516mjxaa6s96amrnmqymnyjz7wlf37l"; depends=[cmrutils fda zoo]; }; - maraca = derive2 { name="maraca"; version="0.5.1"; sha256="0ibbv36nhm37w5l1jvghkkcc662w9wfpfvz6nydlwrkdqiwk4g54"; depends=[checkmate dplyr ggplot2 hce tidyr]; }; + maraca = derive2 { name="maraca"; version="0.6"; sha256="1x3v3rm2gmshnrvqs29qgay41j56qwzzbxrjflybb0l6n4a8ys6h"; depends=[checkmate dplyr ggplot2 hce tidyr]; }; marble = derive2 { name="marble"; version="0.0.2"; sha256="15m65ikk52khjrwgy2xl8pj671rf3yfqjghx2zdcs43afsyfisa0"; depends=[Rcpp RcppArmadillo]; }; march = derive2 { name="march"; version="3.3.2"; sha256="1qdjajb5mkq2r7p224kbxhf01s75hry5c5hx1cnsb48dfzd2s5xg"; depends=[]; }; marcher = derive2 { name="marcher"; version="0.0-2"; sha256="0hcxbfrwniih4kvx5sxhlffz1pc87kf52v8hvaf193rhhdykis5q"; depends=[magrittr Matrix minpack_lm mvtnorm numDeriv plyr RColorBrewer scales zoo]; }; marelac = derive2 { name="marelac"; version="2.1.11"; sha256="0wl1z4sq61qq8d3szcd772rw35mlcrf7d9g8q9dr0znwvfj9gqdh"; depends=[seacarb shape]; }; marg = derive2 { name="marg"; version="1.2-2.1"; sha256="1r6rl7dhvm8dghm7pm4hfw3924qja65hczl6d47v9ixnv4rxyzr9"; depends=[statmod survival]; }; margaret = derive2 { name="margaret"; version="0.1.4"; sha256="1hyflwfw9pphcbxnx9wf0alqi17s5k3j7wvh95ka2h9fvyrpj11r"; depends=[devtools dplyr httr igraph lubridate purrr readr rlang rvest scholar stringi stringr tibble tidyr tidytext tidyverse treemapify usethis widyr writexl]; }; - marginaleffects = derive2 { name="marginaleffects"; version="0.16.0"; sha256="0w83n68fr3igjilqp35w96pf0srcz17q5j6ii7r34y7zjgrn46md"; depends=[checkmate data_table generics insight Rcpp RcppEigen rlang]; }; + marginaleffects = derive2 { name="marginaleffects"; version="0.17.0"; sha256="1h5vdd2rqs0d261qdj79h6z1gbz5xhig25wprxvzk6z1lnhdpb2h"; depends=[checkmate data_table generics insight Rcpp RcppEigen rlang]; }; marginalizedRisk = derive2 { name="marginalizedRisk"; version="2021.2-4"; sha256="0kagl9xghq9nsh9qvx165j1a5plh08zxhb6nm8j402mnl8pq7a4z"; depends=[]; }; margins = derive2 { name="margins"; version="0.3.26"; sha256="0sx5xjbzz1rjz8bklfna3171s53xsh123x4bh0kmwp006v8rv309"; depends=[data_table MASS prediction]; }; marima = derive2 { name="marima"; version="2.2"; sha256="03nvh93r4052li84yjqzc106gwh1542q9s192s980gs6sgy8scm6"; depends=[]; }; mark = derive2 { name="mark"; version="0.7.0"; sha256="0zbzp4y7gh6bq20ymfpmfihxn0z8gl0xn5fcshikh59ikqrm0mff"; depends=[cli fs fuj magrittr rlang]; }; - markdown = derive2 { name="markdown"; version="1.11"; sha256="052zrb6bnr6k3p9pmm3vfh3g7z20g6pjvphjdiqyjb4mb9sn3z27"; depends=[commonmark xfun]; }; + markdown = derive2 { name="markdown"; version="1.12"; sha256="182b290dj0c6m4qf4azyih521ski0ssk1awzmbzfbqlcy3lf7p3x"; depends=[commonmark xfun]; }; markdownInput = derive2 { name="markdownInput"; version="0.1.2"; sha256="1qxil2liikbbn6w8niyc03fwqvwvdv6wiy98ip8j77729i7g2hln"; depends=[markdown shiny shinyAce]; }; marked = derive2 { name="marked"; version="1.2.8"; sha256="1i5vay60g6ddqnnqdj89yhsqxdcw9yzqpwq9gv7qc1psb8f77052"; depends=[bookdown coda data_table expm kableExtra knitr lme4 Matrix numDeriv optimx R2admb Rcpp TMB truncnorm]; }; markerpen = derive2 { name="markerpen"; version="0.1.1"; sha256="0i9md9vbqkxibjkn37givxzq8mq0232cvv2fyz6g8cj6flxm6vzr"; depends=[Rcpp RcppEigen RSpectra]; }; @@ -12755,17 +12965,19 @@ in with self; { markophylo = derive2 { name="markophylo"; version="1.0.9"; sha256="0w6csdvlybfx8azjsrz40mykafgqkl0w23bf2mm2ff5jh6cym66a"; depends=[ape geiger numDeriv phangorn Rcpp RcppArmadillo]; }; markovMSM = derive2 { name="markovMSM"; version="0.1.3"; sha256="1ip96xl8xzh2mhrmd1kmjih7rm2lxf9k4ndf6wcq86r3jzqp4zf0"; depends=[mstate survival]; }; markovchain = derive2 { name="markovchain"; version="0.9.5"; sha256="0z67i4j676gwvxyf1gw73x7jib7jm5jgyzqvami47mfvc3b2dygf"; depends=[expm igraph Matrix Rcpp RcppArmadillo RcppParallel]; }; - markovmix = derive2 { name="markovmix"; version="0.1.2"; sha256="1paqdghzpaxvqashr4lcrgnp7k1821cmwbwszyml8h78bf9ldj9z"; depends=[dplyr forcats pillar purrr Rcpp rlang tibble tidyr]; }; + markovmix = derive2 { name="markovmix"; version="0.1.3"; sha256="07fzyg7szs4662jww6xpdlvki5wc60g2aw16884ghd8h9ch625yi"; depends=[dplyr forcats pillar purrr Rcpp rlang tibble tidyr]; }; marmap = derive2 { name="marmap"; version="1.0.10"; sha256="0zmik6hpc44syknn7k9pbmy01jpnlp4sc9n3rhslrpnks39l0hvq"; depends=[adehabitatMA DBI gdistance geosphere ggplot2 ncdf4 plotrix raster reshape2 RSQLite shape sp]; }; marp = derive2 { name="marp"; version="0.1.0"; sha256="0vywqsvmhghldrpnh2dpkgz41r7q463whfhgrn38pg8jnyhliiwi"; depends=[gtools statmod VGAM]; }; marqLevAlg = derive2 { name="marqLevAlg"; version="2.0.8"; sha256="172zr3jg48wr631l61811vd04llm3chirdhbp2mc8zryn3bbcd6n"; depends=[doParallel foreach]; }; - mas = derive2 { name="mas"; version="0.2"; sha256="0iksx2339nwbcg7c8vfkhr3yaxm6z98w61wwv9zwmgrr18ifg4n5"; depends=[Rcpp RcppEigen truncdist]; }; - mase = derive2 { name="mase"; version="0.1.4"; sha256="0qfffkq4dvp7hrfgvbdzmk732iac4qf56ccyialyhnhjg581v5xi"; depends=[boot dplyr glmnet Rdpack rpms survey tidyr]; }; + marradistrees = derive2 { name="marradistrees"; version="1.0"; sha256="1pl7mw354wczyplylk0w6k026ngf741dn4lq7cd87hnjcfifn86i"; depends=[]; }; + mas = derive2 { name="mas"; version="0.2.1"; sha256="1c62fa1r36nymf2s6lxa6zg0j9zl527szn1gh3m0mcs1nx36lal5"; depends=[Rcpp RcppEigen truncdist]; }; + mase = derive2 { name="mase"; version="0.1.5.1"; sha256="1arsl4apsmhawi8ykqvf7y24wapimzza1irjmlbyhbinrb8hni7b"; depends=[boot dplyr ellipsis glmnet Rcpp RcppEigen Rdpack rpms survey tidyr]; }; mashr = derive2 { name="mashr"; version="0.2.79"; sha256="11pqhnzp1svhs565hm0v15ip1pgnl609ssm4d0qzl8vm4xq3d2qm"; depends=[abind ashr assertthat mvtnorm plyr Rcpp RcppArmadillo RcppGSL rmeta softImpute]; }; maskRangeR = derive2 { name="maskRangeR"; version="1.1"; sha256="1pdj0jdxrqss6hp20163fh1ywdd6wmwjl4s8gnpd3m9d1j955gr3"; depends=[dplyr e1071 lubridate magrittr raster sp]; }; masscor = derive2 { name="masscor"; version="0.0.7.1"; sha256="1153gx648csmzc2znf7l84f134qzp238hqj2s60r9najk1pczgf6"; depends=[metRology]; }; massiveGST = derive2 { name="massiveGST"; version="1.2.3"; sha256="13qhn15gr4fvri1p843zz7y1q6701qmkxq5lysydfmdaxp5hsaxd"; depends=[formattable igraph msigdbr visNetwork WriteXLS]; }; mastif = derive2 { name="mastif"; version="2.0"; sha256="1jfb46f28pkf14xj16n37hbnxg57vjlz7gjhr01bb82dhd293mxw"; depends=[corrplot RANN Rcpp RcppArmadillo repmis robustbase stringi stringr xtable]; }; + matRiks = derive2 { name="matRiks"; version="0.1.2"; sha256="1wnsg7ks5dg52xy4nfv6xsqjqc1yhj6z9wjfjc45rs8rwpg960ys"; depends=[DescTools]; }; matahari = derive2 { name="matahari"; version="0.1.3"; sha256="03mhn4qh1vcz2hr0mxp6gijwgrzvbpfb8dq7lqhchbk5gq5g3fnh"; depends=[clipr jsonlite purrr readr rlang rstudioapi tibble]; }; match2C = derive2 { name="match2C"; version="1.2.4"; sha256="05g0g471dfxrfxq9a5l5zgj16m4kh39wfihjj8fdd9b7qxji7ps8"; depends=[ggplot2 mvnfast rcbalance Rcpp]; }; matchFeat = derive2 { name="matchFeat"; version="1.0"; sha256="0jh484rr71b7887igfslbg7xbr661l9c34d650xd7ajx4gfpn540"; depends=[clue foreach]; }; @@ -12779,6 +12991,7 @@ in with self; { materialmodifier = derive2 { name="materialmodifier"; version="1.2.0"; sha256="0vawqviwh7acbi1f6jlfnwsh6axzwp1hvr697j5ws5g2hz16ib5r"; depends=[downloader imager jpeg magrittr moments png readbitmap stringr]; }; mathjaxr = derive2 { name="mathjaxr"; version="1.6-0"; sha256="0yf1sfkb2kjsplipl2v4k2gp20li9xzsynclg228sy0v243pdi7c"; depends=[]; }; mathml = derive2 { name="mathml"; version="1.2"; sha256="11mrrz0w9mzi9621d9cgnialyrhv8v91ak9slrcni5gx3i3fww84"; depends=[knitr rolog]; }; + mathpix = derive2 { name="mathpix"; version="0.6.0"; sha256="0zzzgz94cmm0gh007mb5jviqcm93ynac9gdkhikza2rp626wnj3x"; depends=[base64enc httr magick purrr rstudioapi]; }; matlab = derive2 { name="matlab"; version="1.0.4"; sha256="1shnq9z7n8yp3l457swrhm3p3nm0j2q4xb9bbxblli030wia520r"; depends=[]; }; matlab2r = derive2 { name="matlab2r"; version="1.5.0"; sha256="0fzp9l34mc0bfl3a9phq4rh9idbb22a2d4j00rvxb4b7yzj2p553"; depends=[styler]; }; matlabr = derive2 { name="matlabr"; version="1.5.2"; sha256="1ba6cajnzldb1gmn7rf0b198h6mdh58r3frm0z0cmvbinspwz3x7"; depends=[stringr]; }; @@ -12791,7 +13004,7 @@ in with self; { matrixLaplacian = derive2 { name="matrixLaplacian"; version="1.0"; sha256="1ixqdv3sz3sc79wn3vqhlq79j7x7cvl878m5hgvbcg6klfvlmmci"; depends=[scatterplot3d]; }; matrixNormal = derive2 { name="matrixNormal"; version="0.1.1"; sha256="0l89s33sjxjb7dyzfny6v7cjw8qmlps4z1bjmlzvcka4qbn6kc2z"; depends=[mvtnorm]; }; matrixProfile = derive2 { name="matrixProfile"; version="0.5.0"; sha256="0nd54k878xf7hzwxawh03c3na4jfvb68afarkwrmmffjlp3i8a9g"; depends=[fftw signal TTR zoo]; }; - matrixStats = derive2 { name="matrixStats"; version="1.0.0"; sha256="0vxd7g1fm4x0f72bs1xfik1d4yklvpjdyg1hpx86pl8fwr86i1wl"; depends=[]; }; + matrixStats = derive2 { name="matrixStats"; version="1.2.0"; sha256="0ws5lmzqm42vrn5791l21zr05l78x0xi6b89jw0gi0vjb4pc20z4"; depends=[]; }; matrixStrucTest = derive2 { name="matrixStrucTest"; version="1.0.0"; sha256="06la9xmpi1viyjml4m1akbna3lwkz5lnq95v1nnf73i9zpfwz03k"; depends=[]; }; matrixTests = derive2 { name="matrixTests"; version="0.2.3"; sha256="0d7i00cxzszfdnjm8q5b72ildic8nig6fbw7rba6acdnllpp7sza"; depends=[matrixStats]; }; matrixcalc = derive2 { name="matrixcalc"; version="1.0-6"; sha256="09pk0ym6qzribxc6v18cpb6478i4r4kzxpkljjbb3n323zqx5iqb"; depends=[]; }; @@ -12800,11 +13013,10 @@ in with self; { matrixprofiler = derive2 { name="matrixprofiler"; version="0.1.9"; sha256="1kqpxg0mvyc494nr2whrcwjaa51jm5n2mxjwhdcr87jqp5y3hma6"; depends=[checkmate Rcpp RcppParallel RcppProgress RcppThread]; }; matrixsampling = derive2 { name="matrixsampling"; version="2.0.0"; sha256="05dbn7rj07jx1hj7i6k3akf11hysxg6v32kav9fvsqmiy2zkippa"; depends=[keep]; }; matrixset = derive2 { name="matrixset"; version="0.2.0"; sha256="06fnm8l9cqciximnj1q20841c8133zkjxap2gkid5mj4mnlnwv2r"; depends=[cli crayon dplyr Matrix pillar purrr R6 Rcpp rlang stringr tibble tidyr tidyselect vctrs]; }; - matsbyname = derive2 { name="matsbyname"; version="0.6.6"; sha256="1vz5i82mif1b1640l86ly4k91k756dj30bkhxlgxvycapl9b0lg9"; depends=[assertthat dplyr lifecycle magrittr Matrix matrixcalc purrr RCLabels rlang tibble]; }; - matsindf = derive2 { name="matsindf"; version="0.4.4"; sha256="1rqhzk271y19i8mrcwcfb1ckdxx9adzs6in9xwlqic4n0yscmji9"; depends=[assertthat dplyr lifecycle magrittr matsbyname purrr rlang tibble tidyr]; }; + matsbyname = derive2 { name="matsbyname"; version="0.6.8"; sha256="0lkw6s4qpay45abawklp0hc3vwcyna0pmp98mi7l34b0ni0cmy46"; depends=[assertthat dplyr lifecycle magrittr Matrix matrixcalc purrr RCLabels rlang tibble]; }; + matsindf = derive2 { name="matsindf"; version="0.4.7"; sha256="1l3gxrc9srwlxc2grvihv7zdc9vxg6rff08xmcszyzpapnwwrpy6"; depends=[assertthat dplyr lifecycle magrittr matsbyname purrr rlang tibble tidyr]; }; matuR = derive2 { name="matuR"; version="0.0.1.0"; sha256="01nxs4czzs1kcxk63nwr2gnvffmlnx3yfllrhi8khdkj498s6sx1"; depends=[dplyr ggplot2 ggrepel lubridate magrittr tidyr]; }; mau = derive2 { name="mau"; version="0.1.2"; sha256="1wgiai8f1kbjh9hfwv4m0kavd44ib5xb33p8m16zpawnw14m7sj5"; depends=[data_table ggplot2 gtools igraph RColorBrewer Rdpack stringr]; }; - mauricer = derive2 { name="mauricer"; version="2.5.2"; sha256="1zd68dzbbcck0y7bk6dw3yp6v9rh824cp3f0vza6y7lav40q1p2v"; depends=[beastier stringr]; }; maxLik = derive2 { name="maxLik"; version="1.5-2"; sha256="0pdigfpyiqacj2ydhpn5w1h89dz1ydk0syzs25lsgdi40sz0bvkw"; depends=[generics miscTools sandwich]; }; maxcombo = derive2 { name="maxcombo"; version="1.0"; sha256="1hwv38a07ry5fv53r2vizifj83xf98znix8nx4zshqyk38vblgp5"; depends=[dplyr magrittr MCMCpack mstate mvtnorm purrr rlang survival]; }; maximin = derive2 { name="maximin"; version="1.0-4"; sha256="0pkf84313x5r7qmhfbd70rjmxffrfk6kzirw1wzrqqygbmcw8k4s"; depends=[plgp]; }; @@ -12825,7 +13037,7 @@ in with self; { mbir = derive2 { name="mbir"; version="1.3.5"; sha256="10sd5gk2k94cmi49nbpywqvh9bxj9q3psa3d00zmw1a7d6c0jjpd"; depends=[effsize psych]; }; mblm = derive2 { name="mblm"; version="0.12.1"; sha256="1fipb3bryaimr30lcxsxrn0ymv24z39swca7s4z7p9xcfg3ban1b"; depends=[]; }; mbmixture = derive2 { name="mbmixture"; version="0.4"; sha256="0g74jzhdf8grrp7pipj1m6hvyv4akycabm0ingy505a5a546ddzg"; depends=[numDeriv]; }; - mboost = derive2 { name="mboost"; version="2.9-8"; sha256="1jyigxi5lzcaa6psc8lyvw2b6ylldqlnps3jlvjrl9zr6336nk6n"; depends=[lattice Matrix nnls partykit quadprog stabs survival]; }; + mboost = derive2 { name="mboost"; version="2.9-9"; sha256="1apcd90xsr9hl5f1szhyibdx61zi4p6s9bvag8bdk2yj4kqq6fmz"; depends=[lattice Matrix nnls partykit quadprog stabs survival]; }; mbr = derive2 { name="mbr"; version="0.0.1"; sha256="08534d0ssj5zli7880a2wzl46ydf87gn5xlv6xp0iph71wlpc52y"; depends=[data_table dplR MASS Matrix Rfast]; }; mbrdr = derive2 { name="mbrdr"; version="1.1.1"; sha256="1ck0l2zp10xlg2d99glb76fxhc1r21aknk8x8452v25gpaqvir4c"; depends=[]; }; mbreaks = derive2 { name="mbreaks"; version="1.0.0"; sha256="1vnrn7f19j52jn707ps9mjz5p0rgcm7mmwbq585hf4c4mbyglrbz"; depends=[ggplot2]; }; @@ -12837,7 +13049,6 @@ in with self; { mcStats = derive2 { name="mcStats"; version="0.1.2"; sha256="1r8dxdfcvznl2968xr6fbany1rh7wq5z1p7fhdf5g4b5l28j8pf9"; depends=[dplyr ggplot2 ggthemes gridExtra magrittr rlang tidyr]; }; mcauchyd = derive2 { name="mcauchyd"; version="1.0.2"; sha256="0qlfmxcpaq8l5ix4b0mnbzgjrq47wchxvzjq6iqkbsjzz2h48bjm"; depends=[MASS rgl]; }; mcb = derive2 { name="mcb"; version="0.1.15"; sha256="0k986m2vyvfqxw3jmlyvf6r5bq68y92fymy03lffq5lmiqhypixj"; depends=[ggplot2 glmnet lars leaps MASS ncvreg reshape2 smoothmest]; }; - mcbette = derive2 { name="mcbette"; version="1.15.2"; sha256="1ckbz9i3zmm8r4y7cx0n9d2jqzx8lmf497ywqmx8bq3mprqxnb5p"; depends=[babette beastier beautier curl devtools mauricer Rmpfr testit txtplot]; }; mcbiopi = derive2 { name="mcbiopi"; version="1.1.6"; sha256="1caw2sy15hw2zw0bdynwnsa7hn4rly34hlxp06nwm5lssz8l2597"; depends=[]; }; mcboost = derive2 { name="mcboost"; version="0.4.2"; sha256="0748av1dy6fag33slhi24km17qpi7y6cydl1vmdhxz96902lcr5r"; depends=[backports checkmate data_table glmnet mlr3 mlr3misc mlr3pipelines R6 rmarkdown rpart]; }; mcca = derive2 { name="mcca"; version="0.7.0"; sha256="01nm0plgkik241qhd06v1vs84lf7agc0vkxa27cpr5qlfl4cm4zb"; depends=[caret e1071 MASS nnet pROC rgl rpart]; }; @@ -12848,31 +13059,31 @@ in with self; { mccr = derive2 { name="mccr"; version="0.4.4"; sha256="1scqds1yx317qmjappy2h1m564dcmsqqfpdm8pm3plalag16xrhj"; depends=[]; }; mcemGLM = derive2 { name="mcemGLM"; version="1.1.3"; sha256="0159zak179ziax5n1mmncidg50cjiqzfyc8j96585csah1dzx01d"; depends=[Rcpp RcppArmadillo trust]; }; mcen = derive2 { name="mcen"; version="1.2.1"; sha256="16f7860h6hbpnv1drk793mz3vwm9q4ar6xkag05z0p22p69mm4qy"; depends=[faraway flexclust glmnet Matrix]; }; - mcga = derive2 { name="mcga"; version="3.0.6"; sha256="1zj1bspw950zl2bh0dhn872f637iabk4gyrs8igrjyhm5calaj07"; depends=[GA Rcpp]; }; + mcga = derive2 { name="mcga"; version="3.0.7"; sha256="16vy5iy4k5i3mqchrrh8r229hyhwq4n2clvvp2mpz1iasvq7qz4f"; depends=[GA Rcpp]; }; + mcgf = derive2 { name="mcgf"; version="1.0.0"; sha256="1c5qvww12b8w54a48dsjygqd6chiimn7d9s18hkl2k1gm88nq2jd"; depends=[MASS sp]; }; mcgibbsit = derive2 { name="mcgibbsit"; version="1.2.2"; sha256="1ykg2g57zxaw2z9f7sgyd6kc6wx1lmad13asiy7q79ydzw8x8smw"; depends=[coda]; }; mclm = derive2 { name="mclm"; version="0.2.7"; sha256="1vpg6xsa8im60ld5mlm6yhf2prs6kmwn0sn12b9g8v27dgw3h0iq"; depends=[ca crayon dplyr Rcpp readr stringi stringr tibble tm xml2 yaml]; }; mclogit = derive2 { name="mclogit"; version="0.9.6"; sha256="0sbglgak6jhhpx65jnj59hbpvzs8qjsdjc4w02z0m5j9hrnmzp4s"; depends=[Matrix memisc]; }; - mclust = derive2 { name="mclust"; version="6.0.0"; sha256="0ahj5161lmid0gxyw6vidd4ig50l1374iisn9970zvx1rdp30z6y"; depends=[]; }; + mclust = derive2 { name="mclust"; version="6.0.1"; sha256="0zsk89r2l73zi1dy0195k84n4dqdp97yisll5kg16amxs5pxx4hf"; depends=[]; }; mclustAddons = derive2 { name="mclustAddons"; version="0.7.2"; sha256="1sj1fbw5afhf6h92riw8wk79fzchiaw6rrkfwjq4fx1n87vp4s6q"; depends=[foreach iterators mclust Rcpp RcppArmadillo]; }; mclustcomp = derive2 { name="mclustcomp"; version="0.3.3"; sha256="1kxrms77m7n9lv32771zvwg82xqh5kx8al6f0bknsj8idq8aqbh3"; depends=[Rcpp RcppArmadillo Rdpack]; }; - mcmc = derive2 { name="mcmc"; version="0.9-7"; sha256="0q42m8ab7b6bxhns494ksjdss5f3c5m2jjfdlfj6fk1nz7ax7i5p"; depends=[]; }; + mcmc = derive2 { name="mcmc"; version="0.9-8"; sha256="19vfh868lr4a491gc2x2b2xs83gldw294zbl4bqsgs2q9c6l81ka"; depends=[]; }; mcmcOutput = derive2 { name="mcmcOutput"; version="0.1.3"; sha256="1jw4wyppzlnxaa3iahbwx4gxs3zvppy980rc92dvy18y2sr5138v"; depends=[coda HDInterval MASS]; }; - mcmcabn = derive2 { name="mcmcabn"; version="0.6"; sha256="0vk5km8bk00pxi8qlcq9z3imhj1c9qys6wj8v6iimb1mkxy9ds7c"; depends=[abn coda cowplot ggplot2 ggpubr gRbase]; }; mcmcderive = derive2 { name="mcmcderive"; version="0.1.2"; sha256="0v89nyvr2d57zvjy9qq6drqb48s4n88hb65pima1gx4aqb479yfh"; depends=[abind chk extras mcmcr nlist purrr universals]; }; mcmcensemble = derive2 { name="mcmcensemble"; version="3.0.0"; sha256="1yf8mm0nmw0x89pj3is5rv3arcfbxvkfh8bip1sprcqzsrixa0s8"; depends=[future_apply progressr]; }; mcmcplots = derive2 { name="mcmcplots"; version="0.4.3"; sha256="0187z79gmvcrwqybxh3ckhcrqi0nqhvcvlczgxfkpq95y5czprdq"; depends=[coda colorspace denstrip sfsmisc]; }; mcmcr = derive2 { name="mcmcr"; version="0.6.1"; sha256="0ag8awdibrcylm7gshb60lxyv167k62zldffi7axni3z8w4s9cy5"; depends=[abind chk coda extras generics lifecycle nlist purrr term universals]; }; - mcmcsae = derive2 { name="mcmcsae"; version="0.7.5"; sha256="0zivassh708hysq43dhj1v78hglvvz308hyg7r0rm1pydzb4f0zi"; depends=[GIGrvg loo Matrix matrixStats Rcpp RcppEigen]; }; + mcmcsae = derive2 { name="mcmcsae"; version="0.7.6"; sha256="0zi99lv691f3d5n8qbpjbai3b0g40p3q566gxd5k4rd9wbnsb4i7"; depends=[GIGrvg loo Matrix matrixStats Rcpp RcppEigen]; }; mcmcse = derive2 { name="mcmcse"; version="1.5-0"; sha256="0qvlkv7j35h2lxdzhbsbsrf1cgsbgf4in7lxgwmx7vs85k10v0ja"; depends=[ellipse fftwtools Rcpp RcppArmadillo testthat]; }; mcmsupply = derive2 { name="mcmsupply"; version="0.2.2"; sha256="0mzph8grgcz62rz2z4y4dgmp9xapf2b29lck960lhqp7h2m9awg4"; depends=[abind dplyr foreach ggplot2 magrittr plyr R2jags readxl rlang runjags stringr tibble tidybayes tidyr tidyverse]; }; mco = derive2 { name="mco"; version="1.15.6"; sha256="10h5d2lw6ybyva44nn5wml6v3ljpnv9m1b2lh36vg2cwrdwy5sqp"; depends=[]; }; - mcompanion = derive2 { name="mcompanion"; version="0.5.8"; sha256="14bv7ljz45x1n2gihbhlwh3zz68bpj7mqz0702k4j9139gra3zk0"; depends=[gbutils MASS Matrix Rdpack]; }; + mcompanion = derive2 { name="mcompanion"; version="0.6"; sha256="0d4q4rc8qscjw7d9xhpc6lr9v14vy0jxzzpn68lxaxi4qr31jwrg"; depends=[gbutils MASS Matrix Rdpack]; }; mcount = derive2 { name="mcount"; version="1.0.0"; sha256="1l42d4xd2xyvgzvc8sj59qsnpfn2k8x57dqv4bx9yschm25hspdd"; depends=[bbmle]; }; mcp = derive2 { name="mcp"; version="0.3.3"; sha256="1c19y2611crvxcpz1wl2l5lf7ln9dkc56d14ri30hj44wz2liwdf"; depends=[bayesplot coda dplyr future future_apply ggplot2 loo magrittr patchwork rjags rlang stringr tibble tidybayes tidyr tidyselect]; }; mcparallelDo = derive2 { name="mcparallelDo"; version="1.1.0"; sha256="1ivh0d4f7ks6xwcjywk62h1zhr7h5bbhzpisky7973wi4g8vipbn"; depends=[checkmate R_utils R6]; }; mcprofile = derive2 { name="mcprofile"; version="1.0-1"; sha256="118n3pxzjm4j9y09d1n2hw7pm0b8b0m8mnm5v9kq76vignklh75l"; depends=[ggplot2 mvtnorm quadprog]; }; mcr = derive2 { name="mcr"; version="1.3.3"; sha256="1blaswdd1754fg6xdznkqq1igj6i6x8r3r9vdn3jpfq41qba5d40"; depends=[robslopes]; }; - mcradds = derive2 { name="mcradds"; version="1.0.1"; sha256="1cq6z8ia2dr43cgxgzpag2aydcsl8shj91sw53ysg865wncirmh6"; depends=[boot checkmate DescTools ggplot2 lifecycle magrittr pROC purrr VCA]; }; + mcradds = derive2 { name="mcradds"; version="1.1.0"; sha256="11pa8y6q20rqsflxlsnyjq79l6xbfqy1739zvnvdl024mv0jvrw7"; depends=[boot checkmate DescTools dplyr formatters ggplot2 lifecycle magrittr mcr pROC purrr rlang tibble tidyr VCA]; }; mcreplicate = derive2 { name="mcreplicate"; version="0.1.2"; sha256="12pmfp75sc00cdrkx4xniq74qqx3y67qxwdrrbp2mf562pdn2gmn"; depends=[]; }; mctest = derive2 { name="mctest"; version="1.3.1"; sha256="1d248r9ifwl1xhvka6z69l943rvbq7s7ag6vqp9lljkcybvg75f2"; depends=[]; }; mctq = derive2 { name="mctq"; version="0.3.2"; sha256="1qp9jmpi6pbzn8jqg0i35zznc1sawi1jnky5cdf26hlyi2bjxy48"; depends=[checkmate cli dplyr ggplot2 hms lifecycle lubridate]; }; @@ -12886,21 +13097,21 @@ in with self; { mdbr = derive2 { name="mdbr"; version="0.1.2"; sha256="1c33v2dqz1jjh730p486bi07h9m9clpcfrbvhbvwb8fslqxg76qd"; depends=[readr]; }; mde = derive2 { name="mde"; version="0.3.2"; sha256="121bzypndsx4abls1f7rjrvg98rqkb155vd5aiql8vi1lwgzy9jl"; depends=[dplyr tidyr]; }; mded = derive2 { name="mded"; version="0.1-2"; sha256="1j8fcz5yc70p9qd9l010xj1b625scdps8z1pqh75b45p2hiqbhlc"; depends=[]; }; - mdendro = derive2 { name="mdendro"; version="2.2.0"; sha256="19da8q31s8d8452bb3qcmrn81z663fy2wf4apbywq0dal9s63rrv"; depends=[Rcpp]; }; - mdftracks = derive2 { name="mdftracks"; version="0.2.1"; sha256="0j1j3dbl5g8zv59ppyvnxp39vpd24ygxbdhnavjwnw1v1fpippbf"; depends=[]; }; + mdendro = derive2 { name="mdendro"; version="2.2.1"; sha256="0am5kda7ydwiniqmypzmmqnaz4pkd9hp82vm0pdk3plak5b0dz6w"; depends=[Rcpp]; }; + mdftracks = derive2 { name="mdftracks"; version="0.2.2"; sha256="0v48ffs1dfbls4h0s6r9b7kklzc7v4xznprd8qczsazvw3jj3zgb"; depends=[]; }; mdgc = derive2 { name="mdgc"; version="0.1.7"; sha256="0p2dfvngyv9rwbcjfw7s3diim9k2gbjn7qsmh7ybxhd529y4w0yl"; depends=[BH psqn Rcpp RcppArmadillo testthat]; }; mdhglm = derive2 { name="mdhglm"; version="1.8"; sha256="1myky8d2ilwdliqrzd2i5qvja82iz7w6qbigl7h4znpk8pdgrjb3"; depends=[boot Matrix mvtnorm]; }; mdir_logrank = derive2 { name="mdir.logrank"; version="0.0.4"; sha256="0bhsr005dq9v85sjm2g9xlpksxwzsmsk14g0q5v3hkjvm5wk6xmv"; depends=[MASS]; }; mdmb = derive2 { name="mdmb"; version="1.8-7"; sha256="0qx1ipq8ra2c3f4hnnlj0h1viky5ld694ga6rkp53196s2yn0vhy"; depends=[CDM coda miceadds Rcpp RcppArmadillo sirt]; }; mdpeer = derive2 { name="mdpeer"; version="1.0.1"; sha256="1vsqhah8h47s8k687fwa352549mdz16mwk1g7rcmhx75c2k85w2q"; depends=[boot ggplot2 glmnet magic nlme nloptr psych reshape2 rootSolve]; }; mds = derive2 { name="mds"; version="0.3.2"; sha256="1r4cz49h1sp1kl1sjqapadhd49lpdnr48w9xbwgpfh2ghwxfcval"; depends=[lubridate parsedate]; }; - mdsOpt = derive2 { name="mdsOpt"; version="0.7-1"; sha256="1vsi3whh898djaa0an6r37va1nbdmjsmhnm17m28sgfld9s5nbzk"; depends=[animation clusterSim plotrix smacof spdep symbolicDA]; }; + mdsOpt = derive2 { name="mdsOpt"; version="0.7-6"; sha256="1przk2ganrvs2g15rzby4npy58iwlxv1lsqrzan6z65filncqifq"; depends=[animation clusterSim plotrix smacof spdep symbolicDA]; }; mdscore = derive2 { name="mdscore"; version="0.1-3"; sha256="10cl5r6kd9chdik5v0q91x40xpw2cjvvyi220z4bvngpb0989x8j"; depends=[MASS]; }; mdsr = derive2 { name="mdsr"; version="0.2.7"; sha256="0b1z1ng6zzqwrn0a5i17jcqwh5yyv7nqyghp8w9r6ik1q46hmvz1"; depends=[babynames DBI dbplyr downloader dplyr fs ggplot2 htmlwidgets kableExtra RMariaDB skimr stringr tibble webshot2]; }; mdthemes = derive2 { name="mdthemes"; version="0.1.0"; sha256="1k0fylg8jz0xdfwq85wap6lgrb9zi219vhmry4lysqssx2szkngk"; depends=[cowplot ggplot2 ggtext ggthemes hrbrthemes tvthemes]; }; mdw = derive2 { name="mdw"; version="2020.6-17"; sha256="0jjajgb1w3vx7vqn2z90xq39hvbcrrd2ky8p31g5absqwwm7lwpa"; depends=[kyotil MASS Matrix]; }; meanShiftR = derive2 { name="meanShiftR"; version="0.56"; sha256="1bn75r5mf3pr1mr8384w175yabw75cynxlz2xh1gl2nar86k4m0x"; depends=[]; }; - meanr = derive2 { name="meanr"; version="0.1-5"; sha256="0db3kjd134f2wbza7py4hpxbbwrbln8dx6rw244my6pi3jifvm5h"; depends=[]; }; + meanr = derive2 { name="meanr"; version="0.1-6"; sha256="0d8zi0c902dqs5457x2zhcp88gg8wf62wrfcnrn5h769j7zy3vk4"; depends=[]; }; meantables = derive2 { name="meantables"; version="0.1.2"; sha256="1lg1a9dccb5xhbnmmgwkncj9w3g1zndh0ddjmascxhvzp9ckdvhg"; depends=[dplyr rlang stringr tibble]; }; measr = derive2 { name="measr"; version="0.3.1"; sha256="002x784ganw4gny134ijpmssl1iq5yxfwral8q319395r6x2c90l"; depends=[BH dcm2 dplyr fs glue loo magrittr posterior psych Rcpp RcppEigen RcppParallel rlang rstan rstantools StanHeaders tibble tidyr]; }; measuRing = derive2 { name="measuRing"; version="0.5"; sha256="0yblqkv5444y75jkb6d0zs728i6vybm294h7b5622pwfjqlfhnh2"; depends=[dplR pastecs png tiff]; }; @@ -12908,13 +13119,13 @@ in with self; { measurements = derive2 { name="measurements"; version="1.5.1"; sha256="061xjwsacsk8vblva4s09xdrvd7kfgxydnpgr7imigyny01c5bh9"; depends=[]; }; measures = derive2 { name="measures"; version="0.3"; sha256="0325hhncg9fhq28cfl1hk6rhcmzzcngsmnkmbn9ri3b4hwqlafal"; depends=[]; }; meboot = derive2 { name="meboot"; version="1.4-9.4"; sha256="0akap3dl6nsfvh2f6d96ij6dvbblyrdnbqqh23ay8ah0r51zx9fs"; depends=[dynlm hdrcde nlme tdigest]; }; - meconetcomp = derive2 { name="meconetcomp"; version="0.3.0"; sha256="14gnlpskkaav9lqas6diaphssccdpaf7qmi4bd46637fmz1iy2iw"; depends=[dplyr ggpubr igraph magrittr microeco R6 reshape2]; }; + meconetcomp = derive2 { name="meconetcomp"; version="0.4.1"; sha256="1nq65cb8hzm0wvlp2sm3xbl2s79n7l6fklww20xzyyx0z5z7f1j6"; depends=[dplyr ggplot2 ggpubr igraph magrittr microeco R6 reshape2]; }; mecor = derive2 { name="mecor"; version="1.0.0"; sha256="0jcqf6d7x16hs0mrnkawlkl9idd2g5zb6l6mqdavkdx43fhk38j4"; depends=[lme4 lmerTest numDeriv]; }; mecoturn = derive2 { name="mecoturn"; version="0.3.0"; sha256="1qr7p50wplg3nwvaz595nxfrf5b1dc8l4y13jx65r8kvksqrl07g"; depends=[betareg ggplot2 ggpubr glmmTMB GUniFrac lmerTest magrittr microeco R6]; }; medExtractR = derive2 { name="medExtractR"; version="0.4.1"; sha256="0dn85yj61mz62bdxxvaxads6j9qf209sypmdvb9jx83c2sc7f4g6"; depends=[stringi stringr]; }; medScan = derive2 { name="medScan"; version="1.0.1"; sha256="19zvl50xbnf76d0ck30zrfd8cv6j250jl9y00vj1cbl6sspwz6ss"; depends=[fdrtool HDMT locfdr qqman qvalue]; }; mederrRank = derive2 { name="mederrRank"; version="0.1.0"; sha256="01dv7dabp2mvn99szaf8l44gbsy7zrllcm55zy6rbd0g9989ilnl"; depends=[BB numDeriv]; }; - medfate = derive2 { name="medfate"; version="3.1.4"; sha256="1j37b0yyr6710ib6xk1i3mvn3alwwf2959ppbqbak1njzza2fvn9"; depends=[ggplot2 meteoland Rcpp shiny]; }; + medfate = derive2 { name="medfate"; version="3.2.0"; sha256="1g8911izvcicfc7jyrz5n77ra8zsmf6qj4811v3xc0pjck71a0yq"; depends=[ggplot2 meteoland Rcpp shiny]; }; medflex = derive2 { name="medflex"; version="0.6-10"; sha256="0cybshbk2qvh38n9sc6qf9jwjhzs4zz31awx3bbyqfwzjgzai2dx"; depends=[boot car Matrix multcomp sandwich]; }; mediacloudr = derive2 { name="mediacloudr"; version="0.1.0"; sha256="1r11mpz44msla71lqw45r9s8z7rwvbnqi026l0ljx6crby183h0w"; depends=[httr jsonlite rvest xml2]; }; mediateP = derive2 { name="mediateP"; version="0.2.0"; sha256="0qmams2hdvhq7abfidblgdz44nh5ja3byn233q3k61hvz7asxmc7"; depends=[boot]; }; @@ -12932,7 +13143,7 @@ in with self; { meifly = derive2 { name="meifly"; version="0.3.1"; sha256="0pgmxa4g16zhx3jx5g56h2s1f4cr4bkz3bp7404dm2729083rvjx"; depends=[leaps MASS plyr]; }; mekko = derive2 { name="mekko"; version="0.1.0"; sha256="09y50k4r4mnx351a5zhkqg9s2xyl3d149dhmfy2z6hzm5yg2ajyi"; depends=[ggplot2]; }; melt = derive2 { name="melt"; version="1.10.0"; sha256="0rg2vm9gp65h4hgwhyrfhyh5h08dpffxhxg4hhzslai4f5yv7385"; depends=[BH dqrng Rcpp RcppEigen]; }; - meltr = derive2 { name="meltr"; version="1.0.1"; sha256="0rg6frch51ydigsas6ycfhkgd0jldi95paq6gmja6rcq6vlwnhgj"; depends=[cli cpp11 R6 rlang tibble]; }; + meltr = derive2 { name="meltr"; version="1.0.2"; sha256="1h2a09n0az9s81m9n4a0h3dckxxgb9vpj03kal29ms0zwn525xpx"; depends=[cli cpp11 R6 rlang tibble]; }; meltt = derive2 { name="meltt"; version="0.4.3"; sha256="1j2iz05xr9ddj9pk2yw7j7kjfr9rxmxkk123c6336fqdm14wvd21"; depends=[dplyr ggplot2 leaflet plyr Rcpp RcppArmadillo reticulate shiny shinyjs tibble tidyr]; }; mem = derive2 { name="mem"; version="2.18"; sha256="1jz2zadwm9gvlgfr1dvi8m6p3zm3bjz4n4apkbpj8g594ghcbrpx"; depends=[boot dplyr EnvStats ggplot2 mclust purrr RColorBrewer RcppRoll sm tidyr]; }; memapp = derive2 { name="memapp"; version="2.16"; sha256="0gjphzq2lr2qn7adjm6vvm50wqg6fhv0p28mcw2yjwiq8yrr0f3b"; depends=[dplyr DT formattable ggplot2 mem plotly RColorBrewer shiny shinyBS shinydashboard shinyjs shinyWidgets stringi stringr tidyr]; }; @@ -12940,8 +13151,8 @@ in with self; { memery = derive2 { name="memery"; version="0.5.7"; sha256="1c0gv5853klzq90w4s2bxdribak8jpczmsxvi5ij4kkqq911siz1"; depends=[Cairo colourpicker cowplot ggplot2 jpeg magrittr png purrr shiny shinyBS shinycssloaders showtext sysfonts]; }; memgene = derive2 { name="memgene"; version="1.0.2"; sha256="1f1v651vab4b3bfxn8wp5p848h6vy7ylr52zirwhnhxj37fzhkq6"; depends=[ade4 gdistance raster sp vegan]; }; memify = derive2 { name="memify"; version="0.1.1"; sha256="1dnbaz57v50mg2kxn5y7cdfrsv1h046cwqh48mpabgh6vf018w4y"; depends=[]; }; - memisc = derive2 { name="memisc"; version="0.99.31.6"; sha256="0vnrq6lkqzba76222fsw9hp0sasq65r43iyc23nw6q3fzi7nncsj"; depends=[data_table jsonlite lattice MASS yaml]; }; - memo = derive2 { name="memo"; version="1.1"; sha256="15wqadjwjrkj3vlq19x1j50nddfrm1lvipahxvmiv94lmy71pdlj"; depends=[digest]; }; + memisc = derive2 { name="memisc"; version="0.99.31.7"; sha256="0drn923y8bwwwk2csa7l9b3fd06zfrfgi3b0pn7b23aja1c1h0xl"; depends=[data_table jsonlite lattice MASS yaml]; }; + memo = derive2 { name="memo"; version="1.1.1"; sha256="1gqdb8y2khcnd1h2906kz1k7x58lw2ri48s9glfjq6whpj6bzpdk"; depends=[digest]; }; memochange = derive2 { name="memochange"; version="1.1.1"; sha256="144134kpchb7ps8b2g7pyga5add0iqphzcwygf11aybmbzmp90x7"; depends=[forecast fracdiff longmemo LongMemoryTS sandwich strucchange urca]; }; memofunc = derive2 { name="memofunc"; version="1.0.2"; sha256="02y32mnwafqnsvs3vy4g8v0jmdvnx935dqavy3q1f2n8c76p0bk9"; depends=[digest magrittr uuid]; }; memoiR = derive2 { name="memoiR"; version="1.2-4"; sha256="1c4vld3g14gcw1z5h9j3hdxibv4mccjyhq76w0dkvwy9rzpijwfr"; depends=[bookdown distill rmarkdown rmdformats usethis]; }; @@ -12952,6 +13163,7 @@ in with self; { merDeriv = derive2 { name="merDeriv"; version="0.2-4"; sha256="1piswi4l7ri3251shmanhygipmsw8zg701jqd0am1s76kj16l9cc"; depends=[lavaan lme4 Matrix nonnest2 numDeriv sandwich]; }; merTools = derive2 { name="merTools"; version="0.6.1"; sha256="09mr4gzrfxxq3ll76d90nywzp4f47rd8awaq826mc3hnjphh33md"; depends=[abind arm blme broom_mixed dplyr foreach ggplot2 lme4 Matrix mvtnorm shiny]; }; mergeTrees = derive2 { name="mergeTrees"; version="0.1.3"; sha256="17aqgfd1ky5zq6i9s1djvdqjdd8lzkblf0cdw82i9mpzfhcz1fav"; depends=[Rcpp]; }; + mergen = derive2 { name="mergen"; version="0.1.0"; sha256="0nzgqsmbgk4472c64pr1qhmbhdk69qmicb5qni744crxlar92g5x"; depends=[assertthat BiocManager httr jsonlite openai rmarkdown]; }; mergingTools = derive2 { name="mergingTools"; version="1.0.1"; sha256="04ryamfb19js6dq4iv2j0p2dlgrayl3zis2r1kic1wfvh4a46ihg"; depends=[dplyr MASS purrr rlang stringr tidyr]; }; merlin = derive2 { name="merlin"; version="0.1.0"; sha256="11in84pxgz76l2cfpd7m03fai1gwdhp2rzrn3pbwrpywgq210pmj"; depends=[MASS randtoolbox statmod survival]; }; merror = derive2 { name="merror"; version="3.0"; sha256="14mwkwz6ih4442b4vbxqr60694ka6v0salg0qa0fgw1vfxgknz44"; depends=[OpenMx]; }; @@ -12960,7 +13172,7 @@ in with self; { messi = derive2 { name="messi"; version="0.1.1"; sha256="1z3fjxfmvxc9zr98zmkd84rj27iabjmw71hwqgnbjwcw5mnw2b5h"; depends=[ggplot2 MASS patchwork progress]; }; messy_cats = derive2 { name="messy.cats"; version="1.0"; sha256="0znjp1wcrkpgm778z5iqw91bnk8vv0x04dpng8pcmh0igsmc3j68"; depends=[dplyr gt rapportools stringdist stringr varhandle]; }; messydates = derive2 { name="messydates"; version="0.3.5"; sha256="1iqh72avq8pvirzpg227iyhhd413g2d07pa8blkqx5d4wdqnlwna"; depends=[dplyr lubridate purrr stringr tibble]; }; - metR = derive2 { name="metR"; version="0.14.0"; sha256="09xyg4xx6fkq39dlkkm6g91nc8lc5p463rxpa30lrlhzybgr01vy"; depends=[checkmate data_table digest Formula formula_tools ggplot2 gtable isoband lubridate memoise plyr purrr scales sf stringr]; }; + metR = derive2 { name="metR"; version="0.14.1"; sha256="1scp7camgip7dcjvw68dch7cf3d05rhbvsrq3jr1860pb2cbwi8l"; depends=[checkmate data_table digest Formula formula_tools ggplot2 gtable isoband lubridate memoise plyr purrr scales sf stringr]; }; metRology = derive2 { name="metRology"; version="0.9-28-1"; sha256="1syjwblyd18myxrs0hx4m91fgb6zs3r4g7w701j2f2pw6j9mvz0y"; depends=[MASS numDeriv robustbase]; }; meta = derive2 { name="meta"; version="6.5-0"; sha256="1pvs4anzmpcyrzqm77pfqhwh7zkzafcqqvy8hsiv0lkn9hrn8za2"; depends=[CompQuadForm lme4 metafor xml2]; }; meta_shrinkage = derive2 { name="meta.shrinkage"; version="0.1.4"; sha256="15svx5d6bfy947kkc2na6yapxwliiwh757w8xahsdkgrxhzm8qc8"; depends=[]; }; @@ -12975,6 +13187,7 @@ in with self; { metaMA = derive2 { name="metaMA"; version="3.1.3"; sha256="13imp5d1ggw4qc7win4d2nvwvl92s9visb6bjm09h69lp18h631s"; depends=[limma SMVar]; }; metaRMST = derive2 { name="metaRMST"; version="1.0.0"; sha256="1mq9j7iczjh7d3cps9g1bh0f8k388bdn8d5lkjs2s8y9fq1kxzmx"; depends=[meta mvmeta rstpm2 survival survRM2]; }; metaRNASeq = derive2 { name="metaRNASeq"; version="1.0.7"; sha256="1c9qxac7439wxnmr1jah37pmski5wyap1vd4nb8gvq4indbdiaz2"; depends=[]; }; + metaRange = derive2 { name="metaRange"; version="1.0.1"; sha256="002vnnbvnhwy7qs3iqnw57nch342mz30rf05yxmxp6dkiqf3xiyx"; depends=[checkmate R6 Rcpp RcppArmadillo terra]; }; metaSDTreg = derive2 { name="metaSDTreg"; version="0.2.2"; sha256="00lwfx083a449yppnh3zai2hyzc0g53v8nr8r4ippdv088612iq6"; depends=[Matrix maxLik ordinal truncnorm]; }; metaSEM = derive2 { name="metaSEM"; version="1.3.1"; sha256="0m3nc5kazi6pa7aih56g2022kklf56yk4f7lv0hlmjszhc6rhpww"; depends=[ellipse lavaan MASS Matrix mvtnorm numDeriv OpenMx]; }; metaSurvival = derive2 { name="metaSurvival"; version="0.1.0"; sha256="05f103fi287y64gys73a55snw54bnph69q8dykfii10dykd44g0y"; depends=[mvtnorm survival]; }; @@ -12986,7 +13199,6 @@ in with self; { metacoder = derive2 { name="metacoder"; version="0.3.6"; sha256="15pqqnyxv82dg00skq100j2p2zkpl7kw8x3s0bvlp3xhw5srdax2"; depends=[ape cowplot crayon dplyr GA ggfittext ggplot2 igraph lazyeval magrittr R6 Rcpp RCurl readr rlang seqinr stringr taxize tibble vegan]; }; metacom = derive2 { name="metacom"; version="1.5.3"; sha256="0c0gzn28cl2sl52wx2n36jm9c18d9s3yqjyx88kgbmd9069z1nvk"; depends=[vegan]; }; metaconfoundr = derive2 { name="metaconfoundr"; version="0.1.2"; sha256="0aiz10wjb24p52hx5srmws7myncjdvhd8kxbnxyaxg31wgxl3183"; depends=[dplyr forcats ggplot2 magrittr purrr rlang shiny stringr tibble tidyr tidyselect]; }; - metacor = derive2 { name="metacor"; version="1.0-2.1"; sha256="0y3z7jbhw5c2dbn9fx9wlw1311irjc2xvnm5hnaixbbj53qz24n0"; depends=[gsl rmeta]; }; metacore = derive2 { name="metacore"; version="0.1.2"; sha256="0pc0z0i4psm00pack5rx4pmg0cq9x0yiv8xwmnkn80rl3yhagq98"; depends=[dplyr magrittr purrr R6 readxl rlang stringr tibble tidyr tidyselect xml2]; }; metadat = derive2 { name="metadat"; version="1.2-0"; sha256="1f7mb3pw5d0akr09jjva06ay223izhpzbr21bapnw99x1kiybk7h"; depends=[mathjaxr]; }; metadynminer = derive2 { name="metadynminer"; version="0.1.7"; sha256="0ch86qqs3872d28c8wrs24ryg2xahqsmndmzjc3z6qznkrq1adzh"; depends=[Rcpp]; }; @@ -13002,7 +13214,8 @@ in with self; { metajam = derive2 { name="metajam"; version="0.2.3"; sha256="0ryzsnwfhapsyz40ckjj6gn2chf37m62z3l7xv703878bghpdqwc"; depends=[dataone dplyr EML emld lubridate purrr readr rlang stringr tibble tidyr]; }; metalite = derive2 { name="metalite"; version="0.1.3"; sha256="1pai4a5mnba80cyvhpdxhk0hwzhmw2xa23px1x7154ddl6rnykvg"; depends=[glue rlang]; }; metalite_ae = derive2 { name="metalite.ae"; version="0.1.1"; sha256="0z33yj8v67mkjg47zd627mnp0p1b2gnlvj7gf0d7np1j38572j1s"; depends=[dplyr glue metalite r2rtf tidyr]; }; - metamedian = derive2 { name="metamedian"; version="1.1.0"; sha256="0zr0k1dkgqpzg7pc3g8ischh2mg2gy3vdrc7fiaa9m4hc62iqgzj"; depends=[estmeansd Hmisc metaBLUE metafor]; }; + metalite_table1 = derive2 { name="metalite.table1"; version="0.3.0"; sha256="042y400x994qhwidw5nadxf8mqd6kkrl081bzi6v1bqa17y8qw6c"; depends=[htmltools jsonlite metalite r2rtf reactable]; }; + metamedian = derive2 { name="metamedian"; version="1.1.1"; sha256="17p8npnaddsdikii9c8zhvbwhkpwgncksipzsslrs7d4pz6wlfvf"; depends=[estmeansd Hmisc metaBLUE metafor]; }; metamer = derive2 { name="metamer"; version="0.3.0"; sha256="0b427cbasy1irks9jy5kjg3ay5xa01dcalhl8g14smhkdv5054wz"; depends=[FNN progress]; }; metamicrobiomeR = derive2 { name="metamicrobiomeR"; version="1.2"; sha256="0fgdjy2s47pqmb9x79a4sf0kn4hbc49rd41jnzw0d3ll1l9kwy7f"; depends=[compositions dplyr gamlss gdata ggplot2 gridExtra lme4 lmerTest matrixStats meta plyr tidyr zCompositions]; }; metamisc = derive2 { name="metamisc"; version="0.4.0"; sha256="12ydvkpni7a7v0x8lfknsy4c6hmgjqri3l33m4fwsai3rhnq6hsa"; depends=[dplyr ggplot2 lme4 metafor mvtnorm plyr pROC]; }; @@ -13017,12 +13230,12 @@ in with self; { metapower = derive2 { name="metapower"; version="0.2.2"; sha256="1r6mmdxxi83isjjyfzblwpzfgqdmfhbqmq49zm2b4jd0zvc0lfcx"; depends=[cowplot dplyr ggplot2 knitr magrittr rlang testthat tidyr]; }; metapro = derive2 { name="metapro"; version="1.5.11"; sha256="1630fyw3mb2fv0v5nmrp9xc50ac98j135c391rr3qq5rkn89r5f2"; depends=[metap]; }; metaprotr = derive2 { name="metaprotr"; version="1.2.2"; sha256="1iz5aqd8ha0h19sa58s7xd4h26lbqp68dxy93pxnx9bj3bv615b3"; depends=[ade4 dendextend dplyr ggforce ggrepel reshape2 stringr tidyverse]; }; - metarep = derive2 { name="metarep"; version="1.1"; sha256="0430nc3bqznrbf4gr37jfpihyx6psip9mlcxrx2lwfajfijy46w4"; depends=[meta]; }; + metarep = derive2 { name="metarep"; version="1.2.0"; sha256="04xfvdn1yng0bnq91qa9hfsa2y37h6r3ffzvfip27wq2wy0q9sn9"; depends=[meta]; }; metasens = derive2 { name="metasens"; version="1.5-2"; sha256="0jd5adkyi14blbppmv6lny4pnj0ld2wkq6xpv7dhvh0xhgw5n49y"; depends=[meta]; }; metatest = derive2 { name="metatest"; version="1.0-5"; sha256="1h3dcs1m7606b3a41yw2lak3lrqmsbpnx67qv24wvq003apz1sfd"; depends=[]; }; metathis = derive2 { name="metathis"; version="1.1.4"; sha256="1hlmz9yh6nxyi24plg1z4ln003vb1ja5flgyql8wfl1pzsc1sf28"; depends=[htmltools knitr magrittr purrr]; }; metatools = derive2 { name="metatools"; version="0.1.5"; sha256="0lcpq0k73kcr7fr8i7dyi785mapvyd6slz93r4spd7z8bg71nm25"; depends=[dplyr magrittr metacore purrr rlang stringr tibble tidyr]; }; - metaumbrella = derive2 { name="metaumbrella"; version="1.0.8"; sha256="01iq2p1g3m4jlraaix7d3fkxsr558m7xzgl517ijgdsa5bvmqypa"; depends=[meta powerSurvEpi pwr readxl withr writexl xtable]; }; + metaumbrella = derive2 { name="metaumbrella"; version="1.0.9"; sha256="1sly9ivzjyrp0d2rha7ry3xlk6l5m69scyacjsx6yqfyrbf5w3kx"; depends=[meta powerSurvEpi pwr readxl withr writexl xtable]; }; metavcov = derive2 { name="metavcov"; version="2.1.5"; sha256="1md0ib23qzx9gk1xdz0382b1lcm40izkyxyb207787lnwmyivy1r"; depends=[ggplot2]; }; metaviz = derive2 { name="metaviz"; version="0.3.1"; sha256="0jvv49rw66v7saj2y1q88rp6fyzq7473af5d3k77ymvjbpqyrbyz"; depends=[dplyr ggplot2 ggpubr gridExtra metafor nullabor RColorBrewer]; }; metawho = derive2 { name="metawho"; version="0.2.0"; sha256="1mflkrlnb1wk9vbbj621cy64s78q677d8fcnsi1ybh49k7sqmw20"; depends=[dplyr forestmodel magrittr metafor purrr rlang]; }; @@ -13030,21 +13243,21 @@ in with self; { meteo = derive2 { name="meteo"; version="2.0-2"; sha256="18aiy133527cxa3qj2mjwik6d7w6kgs7qmb5zywsbvb2bc3hmn5v"; depends=[caret CAST data_table DescTools doParallel dplyr foreach gstat nabor plyr ranger raster sf sftime snowfall sp spacetime terra units]; }; meteoEVT = derive2 { name="meteoEVT"; version="0.1.0"; sha256="1i3zi1cgzv6lymmd7m92rmhmnxmdvi5nl367hnfbgxzy44van8l8"; depends=[ncdf4 purrr]; }; meteoForecast = derive2 { name="meteoForecast"; version="0.56"; sha256="0nbjl4x06ni6jk8ji6n3cgd07iszw87lwg52rp8avvsz3kh19p5c"; depends=[ncdf4 raster sp XML zoo]; }; - meteoland = derive2 { name="meteoland"; version="2.1.0"; sha256="0480g35nl0hs10z9mjq063b130fdqi67bzmclq8b1y4jdlqfzgpr"; depends=[assertthat cli cubelyr dplyr lifecycle lubridate ncdfgeom ncmeta purrr Rcpp rlang sf stars tidyr units]; }; + meteoland = derive2 { name="meteoland"; version="2.2.1"; sha256="1543ka7yd7v1yca7my1114mb5j6wmn7dsj3kcr7gj8z99v8mxadk"; depends=[assertthat cli cubelyr dplyr lifecycle lubridate ncdfgeom ncmeta purrr Rcpp rlang sf stars tidyr units]; }; meteor = derive2 { name="meteor"; version="0.4-5"; sha256="1kcgfi4r3gd0n64hb0pa3bkabh16572r9ff5vdmbgmj3hkv8v8wi"; depends=[Rcpp]; }; meteorits = derive2 { name="meteorits"; version="0.1.1"; sha256="1vk8pbhfc5mbkbpw7ml81gx9i8187xp3vx36pbyyhjbrpy6gqabx"; depends=[MASS pracma Rcpp RcppArmadillo]; }; - meteospain = derive2 { name="meteospain"; version="0.1.3"; sha256="0zfrbrij7mq44pj87frwfj0zi6bicr73nnrizyjqqbwf542lzvx4"; depends=[assertthat cachem cli curl dplyr glue httr jsonlite lubridate memoise purrr rlang sf stringr tidyr units vctrs xml2]; }; + meteospain = derive2 { name="meteospain"; version="0.1.4"; sha256="16y3ay7bfjwf5f2nl63fhfs9j040zx5w9jfv45fbqksfcdhkcid1"; depends=[assertthat cachem cli curl dplyr glue httr jsonlite lubridate memoise purrr rlang sf stringr tidyr units vctrs xml2]; }; metevalue = derive2 { name="metevalue"; version="0.2.4"; sha256="1iazpldafzq1rzg1hbp9yyqwngq00mbxmfahidlj3ybl1y459lah"; depends=[dplyr psych sqldf]; }; methcon5 = derive2 { name="methcon5"; version="0.1.0"; sha256="08xsi6j65izxqcrlh37f2d7m3pwna1v6zvdv96mqylsjqgqmbk5x"; depends=[dplyr magrittr purrr rlang]; }; metools = derive2 { name="metools"; version="1.0.0"; sha256="05l49ifx2nnlbdxh2qhdb0islf95fc67720rm5in7mrlida4khnq"; depends=[ggplot2 lubridate scales stringr tibble tidyr]; }; metrica = derive2 { name="metrica"; version="2.0.3"; sha256="10pkd29vcrm74fxf4i5bmkrj6528vfzipf53nfdpic9bavk2s2i7"; depends=[DBI dplyr energy ggplot2 ggpp minerva rlang RSQLite tidyr]; }; metricsgraphics = derive2 { name="metricsgraphics"; version="0.9.0"; sha256="1zbx82b34y0rr4w7rzvyc1nzk95w6cdkg0j1kkshbmkvplq6v9i4"; depends=[htmltools htmlwidgets magrittr]; }; metrix = derive2 { name="metrix"; version="1.1.0"; sha256="0ixp868pag05a6h4l8q4x55w0dg4xki4q6klfi9dzx82knzb7s9l"; depends=[Matrix stringr vegan]; }; - metro = derive2 { name="metro"; version="0.9.1"; sha256="0agmwvbwhpn5nzzkyz20pspbv6i80i636fhf9sqydgl1fskknrf2"; depends=[geodist hms httr jsonlite tibble]; }; + metro = derive2 { name="metro"; version="0.9.2"; sha256="0w9h7hdnkw7bv85z8cvy7pgxs96sf4nn1ri6bz7knyb6kgvhfqq1"; depends=[geodist hms httr jsonlite tibble]; }; metropolis = derive2 { name="metropolis"; version="0.1.8"; sha256="031fcy0v13bvy7gg26988fvpqdsfndx2rynkhb1jvirnrf0fngy4"; depends=[coda]; }; - mets = derive2 { name="mets"; version="1.3.2"; sha256="1n117qpwfrq9cmnda635h0845ps3zdxq16xn6w30qrcjiikx32qs"; depends=[lava mvtnorm numDeriv Rcpp RcppArmadillo survival timereg]; }; + mets = derive2 { name="mets"; version="1.3.3"; sha256="05shlwm3ay5klsnszlx2j7gyx9chnrzaadcidl0pdbnzdqgqisiz"; depends=[lava mvtnorm numDeriv Rcpp RcppArmadillo survival timereg]; }; metsyn = derive2 { name="metsyn"; version="0.1.2"; sha256="0iwp0nz07yd33qd93fjblmvik1l1xkv6rkccn3054zs2bkrzjq4f"; depends=[foreach readr stringr tibble]; }; - mev = derive2 { name="mev"; version="1.15"; sha256="0ipb61gqwivcqzqsv2p3i96bhwv7wadh50rb8cd1j0pqb5q3s76k"; depends=[alabama nleqslv Rcpp RcppArmadillo Rsolnp]; }; + mev = derive2 { name="mev"; version="1.16"; sha256="0kavj6mzzsjxkac2q0fxyhnzwy51pwld4r77fg024ggliiswjmms"; depends=[alabama nleqslv Rcpp RcppArmadillo Rsolnp]; }; mewAvg = derive2 { name="mewAvg"; version="0.3.1"; sha256="1pnjzfq4rdjjlqp1mxxlpkhkfgq1nym8pgaqrvpm76zw4xnx7p7m"; depends=[]; }; mexhaz = derive2 { name="mexhaz"; version="2.4"; sha256="1dh92gawq6hdq0594m5ayzrafxi2mz3362dx3dgvdmznwcyqvsbz"; depends=[lamW MASS numDeriv statmod survival]; }; mexicolors = derive2 { name="mexicolors"; version="0.2.0"; sha256="0vbhwaq19hqd63qjybssgqxkawjr6vnar6k0nrb583hh1q9hjyg2"; depends=[]; }; @@ -13052,13 +13265,14 @@ in with self; { mfaces = derive2 { name="mfaces"; version="0.1-4"; sha256="0svvnpka2y1p21gvdyc7csw6m0g3kziszw2ll9bq5gpcnl69qk4n"; depends=[face Matrix matrixcalc mgcv]; }; mfdb = derive2 { name="mfdb"; version="7.3-1"; sha256="1l7bvacmvh53rq91jqdb6zqjn3974sy838zfvgfb6nam54r080y4"; depends=[DBI duckdb getPass logging rlang RPostgres RSQLite]; }; mfp = derive2 { name="mfp"; version="1.5.4"; sha256="0a4gfip5y42hn0pk8y8zmvlj65nr5a2ni77z14m1xj1azb9222by"; depends=[numDeriv survival]; }; + mfp2 = derive2 { name="mfp2"; version="1.0.0"; sha256="03xv7zjdcsnyrawwpjgfw5g59h7miwh68wkmbvfkd8wxnfcdmmmv"; depends=[ggplot2 survival]; }; mfpp = derive2 { name="mfpp"; version="0.0.5"; sha256="0i8yp3rmhqy8w6xvdlkg6k8vm3hdihsqrrc94sbx1c1nsd5p2m95"; depends=[genalg ggplot2 igraph nsga2R pracma reshape2 Rfast]; }; mfx = derive2 { name="mfx"; version="1.2-2"; sha256="04pwp67i4sn4rf497pgy6qifwvrcmwyxn8x5sn96fy8qyrdzjfhj"; depends=[betareg lmtest MASS sandwich]; }; mgarchBEKK = derive2 { name="mgarchBEKK"; version="0.0.5"; sha256="0i5f8xghdch9d1cvfgiq2pscpq53ms7ik7jk16gss8i0cx2d3m94"; depends=[mvtnorm tseries]; }; mgc = derive2 { name="mgc"; version="2.0.2"; sha256="1l9qs4nz1rn56qp569nh26yz3c7i4zh3r43c209zh7kvizpagx0i"; depends=[abind boot energy MASS raster]; }; mgcViz = derive2 { name="mgcViz"; version="0.1.11"; sha256="14n9l10rcr9nar71lyw1qmk9xar2zixcx4s9rdnz5dr4jr7330y3"; depends=[gamm4 GGally ggplot2 gridExtra KernSmooth matrixStats mgcv miniUI plyr qgam shiny viridis]; }; - mgcv = derive2 { name="mgcv"; version="1.9-0"; sha256="0w1v0hdswb332xz3br1fcgacib7ddr4hb96cmlycxcpqq5w01cdj"; depends=[Matrix nlme]; }; - mgee2 = derive2 { name="mgee2"; version="0.4"; sha256="03id3g6zbw06xracwjkwfcll62nx7psppjsd3gj05hzjvalqgwks"; depends=[ggplot2 MASS]; }; + mgcv = derive2 { name="mgcv"; version="1.9-1"; sha256="0cnvbdda243as2bxfsgnnk7xjmp1msgr9i4vbd84jfnxpqvvq3vh"; depends=[Matrix nlme]; }; + mgee2 = derive2 { name="mgee2"; version="0.5"; sha256="0p4601z2dyg2yjyjdcl0ry7fda89rjl6kilk8977z8p4n7d1kynj"; depends=[ggplot2 MASS]; }; mggd = derive2 { name="mggd"; version="1.1.0"; sha256="1pr53bnijs5f8d8nj3lvr271qcp1cnw2q9682m3xr5sm0j5g3nlq"; depends=[lifecycle MASS rgl]; }; mglasso = derive2 { name="mglasso"; version="0.1.2"; sha256="1896fg1gdgah8vmikz2br6v0rslhhh2frffkjiy6fnw4qxa5zsv9"; depends=[corpcor ggplot2 ggrepel gridExtra Matrix R_utils reticulate rstudioapi]; }; mglmn = derive2 { name="mglmn"; version="0.1.0"; sha256="1g642hhs28q6x34xgrfrmmsb2jsn9zy4jxad0x5ai3px48zzdb4r"; depends=[mvabund snowfall]; }; @@ -13066,7 +13280,7 @@ in with self; { mgpStreamingSDK = derive2 { name="mgpStreamingSDK"; version="0.2.0"; sha256="1fgcca0jca0jw6gpcqjb5wrcl9x3r2hfhf1xwiwv2w1m7bhc3mkp"; depends=[R6 reticulate]; }; mgss = derive2 { name="mgss"; version="1.2"; sha256="0czzr5hc9sr8yc362q9xag3vphwk1gfahczpya2mh1l6fsa74fbn"; depends=[combinat Matrix Rcpp statmod]; }; mgsub = derive2 { name="mgsub"; version="1.7.3"; sha256="1mci6x65h94qiz9cwikx2inbrwkykv43zbs8abfbx416zrh2bbn9"; depends=[]; }; - mgwrsar = derive2 { name="mgwrsar"; version="1.0.4"; sha256="19rsw5qjcq3bjqajz83dbkjdgh1dazpw7wvkbn4gdcksgmaxm5l2"; depends=[caret doParallel dplyr foreach ggplot2 gridExtra htmltools knitr leaflet mapview Matrix mboost mgcv microbenchmark nabor qlcMatrix Rcpp RcppEigen rlang sf sp spgwr]; }; + mgwrsar = derive2 { name="mgwrsar"; version="1.0.5"; sha256="0xhxx1x625igm54n5wpl4aavcqg9dx9nmazr330538p334df3z8h"; depends=[caret doParallel dplyr foreach ggplot2 gridExtra htmltools knitr leaflet mapview Matrix mboost mgcv microbenchmark nabor Rcpp RcppEigen rlang sf sp spgwr]; }; mhazard = derive2 { name="mhazard"; version="0.2.3"; sha256="030r0l11qplmypwfk45mj31gba96xda7nxzgiyjsgrb20jmcsja5"; depends=[boot plot3D Rcpp RcppArmadillo rootSolve survival]; }; mhcnuggetsr = derive2 { name="mhcnuggetsr"; version="1.1"; sha256="0fq0niigf4lb6jqcy0w4mkfy65pxrw4brf3pg2nvmgnv3c91lgsb"; depends=[rappdirs reticulate stringr tibble]; }; mhsmm = derive2 { name="mhsmm"; version="0.4.21"; sha256="1fibgpl65bl3rwlf9dhlams3gxbjqgwcd26gb0flp4wln6pl8d99"; depends=[mvtnorm]; }; @@ -13075,6 +13289,7 @@ in with self; { mi = derive2 { name="mi"; version="1.1"; sha256="11f75ivnax6p48mp2pasprws488cm2daym87sw2mcrywvf89fyjd"; depends=[arm Matrix]; }; mi4p = derive2 { name="mi4p"; version="1.1"; sha256="1fl5vbykgw3wihv1gqbnqrfjiyng8mzfdg469x6y12mxdrgl4myj"; depends=[emmeans foreach imp4p impute limma mice stringr]; }; miCoPTCM = derive2 { name="miCoPTCM"; version="1.1"; sha256="0bmb06rb53fq8ylcvz693akmz7nkjj50c6ypxsjbfp4crllpi5v9"; depends=[distr MASS nleqslv survival]; }; + miLAG = derive2 { name="miLAG"; version="1.0.2"; sha256="03krcr0l9clafjghpnic0wds1h3zn6ighncip7c2555ql75b0g79"; depends=[dplyr ggplot2 minpack_lm nlsMicrobio testthat]; }; miLineage = derive2 { name="miLineage"; version="2.1"; sha256="0660vk44ywmj0q2cw7pa2z1r039ncw693dnz7zlgc0ipwak3b0ry"; depends=[data_table geepack MASS]; }; miRNAss = derive2 { name="miRNAss"; version="1.5"; sha256="0j4yvd0j7r98m2msllszlzkzrx67a2z4xpx00zpq90hbr5jykxc4"; depends=[CORElearn Matrix Rcpp RSpectra]; }; miRecSurv = derive2 { name="miRecSurv"; version="1.0.2"; sha256="185bkqikkq0maagzwy4y3lxzq8vy1bjz7cz4dhk3v9818dr3fx3g"; depends=[COMPoissonReg matrixStats stringi survival]; }; @@ -13092,22 +13307,23 @@ in with self; { mice = derive2 { name="mice"; version="3.16.0"; sha256="0h20lirk2257y3i1ww5y2pqp9lc21ilmf8yykmz36h55hm8jiw19"; depends=[broom cpp11 dplyr generics glmnet lattice mitml nnet Rcpp rlang rpart tidyr]; }; miceFast = derive2 { name="miceFast"; version="0.8.2"; sha256="0n4hi9f28mzc9h41g7y3nnkr5lq7npafk6ias17xsqw28agc95ir"; depends=[data_table Rcpp RcppArmadillo]; }; miceRanger = derive2 { name="miceRanger"; version="1.5.0"; sha256="0xm8fcvjf6pcfyyk1gnwfdac44q6b33i5byja9lqxy7vygbxmgxd"; depends=[corrplot crayon data_table DescTools FNN foreach ggplot2 ggpubr ranger]; }; - miceadds = derive2 { name="miceadds"; version="3.16-18"; sha256="0xfgh3i6k9c15hwqxp60x4phg3flc7ymrh98x9lsmahanb96rifv"; depends=[mice mitools Rcpp RcppArmadillo]; }; + miceadds = derive2 { name="miceadds"; version="3.17-44"; sha256="0r91rjl44sxdwfdb0z10hnjq7yfiqlcwfm6aa0a7lm1vmk8rvxkf"; depends=[mice mitools Rcpp RcppArmadillo]; }; miceafter = derive2 { name="miceafter"; version="0.5.0"; sha256="192widdnj4ahv2rp09jzzz68n0ycdplv24p50kqd3i6zqnr1cl0s"; depends=[car dplyr magrittr mice mitml mitools pROC purrr rlang rms stringr survival tibble tidyr]; }; - micemd = derive2 { name="micemd"; version="1.9.0"; sha256="00biwwdqwj5szf969x2gf7ydba8g5d3z410avxcgi2blxdh0rza1"; depends=[abind digest ggplot2 GJRM jomo lme4 MASS Matrix mgcv mice mixmeta mvmeta mvtnorm nlme pbivnorm]; }; + micemd = derive2 { name="micemd"; version="1.10.0"; sha256="1rzn4iiv9zml6c0d5j36c4z1kdn03j05m4q03wca7z0k35icsis6"; depends=[abind digest GJRM jomo lme4 MASS Matrix mgcv mice mixmeta mvmeta mvtnorm nlme pbivnorm]; }; michelRodange = derive2 { name="michelRodange"; version="1.0.0"; sha256="1pykqb9hmpvn77k0vhfh36iyhamz9h5kpswq3ql31h9nknfy3ixi"; depends=[magrittr]; }; miclust = derive2 { name="miclust"; version="1.2.8"; sha256="0qxbbybak0illkn99bsmmqlh923g0gw6znjh05wdmgqdsjh3fx1v"; depends=[combinat doBy flexclust irr matrixStats]; }; micompr = derive2 { name="micompr"; version="1.1.4"; sha256="1i50zvhdfxz0zbx5vmiz9s055j6f0j0gf6a2vxhm7cw597rfp3s5"; depends=[]; }; + microCRAN = derive2 { name="microCRAN"; version="0.9.0-1"; sha256="08aygif352awrqy1js8n09vng0f085p27nxbqkiibrrgk2nyk62l"; depends=[assertthat mime plumber rlang xtable]; }; microPop = derive2 { name="microPop"; version="1.6"; sha256="0if218csmnp5vcbcgr9zjk8d7y17al04rpfhjvp76v03xvwjizp5"; depends=[deSolve testthat visNetwork]; }; microbats = derive2 { name="microbats"; version="0.1-1"; sha256="1mahvblaiwg1xk2s34wd1ic8ddc9lh6g0azik2pd97bsf0krkyw8"; depends=[]; }; microbenchmark = derive2 { name="microbenchmark"; version="1.4.10"; sha256="10dlp4295jb5l7lhz80f4mkz3jccv02v277z666wx3bhfaz43k04"; depends=[]; }; microbial = derive2 { name="microbial"; version="0.0.20"; sha256="1y5vhh4sq22c4wxb3c9rzj53niacn97vfg0484d9wkcjb179lc79"; depends=[broom DESeq2 dplyr edgeR ggplot2 ggpubr magrittr phangorn phyloseq plyr randomForest rlang rstatix S4Vectors SummarizedExperiment testthat tidyr vegan]; }; microclass = derive2 { name="microclass"; version="1.2"; sha256="0q6mn1hbi6nk29x2x5a1wcdqp06mjggbrpglk5i8pp4gkqlzhl8q"; depends=[dplyr microcontax microseq Rcpp RcppEigen RcppParallel rlang stringr tibble]; }; microcontax = derive2 { name="microcontax"; version="1.2"; sha256="004g979hyg0asbah7hxr445fidil4ibw1b8pqpjdbgmpm1qgvw7y"; depends=[microseq]; }; - microeco = derive2 { name="microeco"; version="1.1.0"; sha256="12igd4kij7pwd0s40kyvx67bjn94gflnqn3dndn49gna4rhdjpq4"; depends=[ape data_table dplyr ggplot2 igraph magrittr R6 RColorBrewer reshape2 rlang scales tibble vegan]; }; + microeco = derive2 { name="microeco"; version="1.3.0"; sha256="16w52vyikcl971mg519jg7g4s2imml5hz904cm6kf0vz65xcls3c"; depends=[ape data_table dplyr ggplot2 igraph magrittr R6 RColorBrewer reshape2 rlang scales tibble vegan]; }; microhaplot = derive2 { name="microhaplot"; version="1.0.1"; sha256="0g15g7d19yz11nn2g0h8h2m8k1cvmpryz72pnalgv5yi58md5l5i"; depends=[dplyr DT ggiraph ggplot2 gtools magrittr scales shiny shinyBS shinyWidgets tidyr]; }; micromap = derive2 { name="micromap"; version="1.9.7"; sha256="1lkzh7bwmvabvn2qavxmfd2lcn1xv85vq0g6qpbfls4jfy9qxd7g"; depends=[ggplot2 RColorBrewer sf sp]; }; - micromapST = derive2 { name="micromapST"; version="3.0.0"; sha256="1gkjkqhribj9c512f2marv511lqn9vfwv8nziyrjmhfs1alijzzw"; depends=[labeling RColorBrewer readxl rmapshaper sf spdep stringr writexl]; }; + micromapST = derive2 { name="micromapST"; version="3.0.1"; sha256="0ap8pk8gw3lkbv8xq6ghi68abm8gj8rsalxgcf6wan8vrg7d3iw7"; depends=[labeling RColorBrewer readxl rmapshaper sf spdep stringr writexl]; }; micromodal = derive2 { name="micromodal"; version="1.0.0"; sha256="0qf5ckfcnkviilb2la8la9sjfcir7c79v4981jrpsxfy9n6y39vm"; depends=[htmltools]; }; micropan = derive2 { name="micropan"; version="2.1"; sha256="16zs6sqi2c5lwzhd5gbyddp8q4gx5r5sg0pbpk7924i8x4hh081h"; depends=[dplyr igraph microseq rlang stringr tibble]; }; microplot = derive2 { name="microplot"; version="1.0-45"; sha256="0qprvn5zv9ai30lhd8qykffc5f8va886kc5qka34940lin63v389"; depends=[cowplot flextable ggplot2 HH Hmisc htmltools lattice officer]; }; @@ -13125,31 +13341,32 @@ in with self; { midrangeMCP = derive2 { name="midrangeMCP"; version="3.1.1"; sha256="1yfwyglyxxk4i914m8n148cjydlcg7r16zl8acb1w8h963svirk9"; depends=[SMR writexl xtable]; }; miesmuschel = derive2 { name="miesmuschel"; version="0.0.3"; sha256="0gqdq1qsai0rql8l1s7qqdijxhjc48bkkx16c1k36c3skf2lam52"; depends=[bbotk checkmate data_table lgr matrixStats mlr3misc paradox R6]; }; mifa = derive2 { name="mifa"; version="0.2.0"; sha256="1rj3ba746f8759gird0vpvyb4fl0z2ihccpiv3qkr3sc64wgplln"; depends=[checkmate dplyr mice]; }; - migest = derive2 { name="migest"; version="2.0.3"; sha256="0v59yai9xs2yj17lvm7nmw7jzfgglilixwmwy9czi3z4bhb7gknl"; depends=[circlize dplyr forcats magrittr matrixStats migration_indices mipfp purrr stringr tibble tidyr]; }; - migraph = derive2 { name="migraph"; version="1.1.0"; sha256="09ldp1xk9yfm9l8x7dkr3nh845102whmqmgjib5wksgby19v8alw"; depends=[dplyr furrr future generics ggplot2 igraph manynet network pillar purrr rlang sna tidygraph tidyr]; }; + migest = derive2 { name="migest"; version="2.0.4"; sha256="0gksf8f1arpzxmcid1vskkf4s2r6k4n0ss85cag9429lmjpix5h4"; depends=[circlize dplyr forcats magrittr matrixStats migration_indices mipfp purrr stringr tibble tidyr]; }; + migraph = derive2 { name="migraph"; version="1.2.1"; sha256="13qalqdik8pqn20s9vj56p1jis8k8jy43ggz311782jn0ysya7nc"; depends=[dplyr furrr future generics ggplot2 igraph manynet network pillar purrr rlang sna tidygraph tidyr]; }; migrate = derive2 { name="migrate"; version="0.4.0"; sha256="0yf0c7gcn2q8sx0havhqaxk6z69bagfd58drpbqkkpsp62bnq875"; depends=[dplyr magrittr rlang tibble tidyr]; }; migration_indices = derive2 { name="migration.indices"; version="0.3.1"; sha256="198lxv6s1wc6j10ygbc4l2irmmv5448f9av9zsybnpijballx349"; depends=[calibrate]; }; migui = derive2 { name="migui"; version="1.3"; sha256="1y012la9vmchnlcigcciq878w9hlw8zgzp76b3h9b6fwhaa872pm"; depends=[arm gWidgets2 mi]; }; miic = derive2 { name="miic"; version="1.5.3"; sha256="1wrvgzi91jirn5n5fvvbhhpcga7l75h149sz1g1r1wbci181l3bg"; depends=[ppcor Rcpp scales]; }; mikropml = derive2 { name="mikropml"; version="1.6.1"; sha256="13dlzrwyl4sqklypva35qq5194yc95fcpsyclvisdrky040xgxsy"; depends=[caret dplyr e1071 glmnet kernlab MLmetrics randomForest rlang rpart xgboost]; }; mildsvm = derive2 { name="mildsvm"; version="0.4.0"; sha256="02n93ck8458xliqwp226v5b7691a9jx5i7b1q9n0nqc74xkm8h1i"; depends=[dplyr e1071 kernlab magrittr mvtnorm pillar pROC purrr rlang tibble tidyr]; }; - milorGWAS = derive2 { name="milorGWAS"; version="0.3"; sha256="1z44sbs3lmrx32wagk5rr3rc2k8iqq860fz0bi983llmgmhaqdxn"; depends=[gaston Rcpp RcppEigen]; }; + milorGWAS = derive2 { name="milorGWAS"; version="0.6"; sha256="1gl4lg3m11hkj47g7zqq0xavxzj5z1vjbb88pf03r7200qnb5ff8"; depends=[gaston Rcpp RcppEigen]; }; milr = derive2 { name="milr"; version="0.3.1"; sha256="03hihr1w5j0mlvi5vm9m5vb9i6nyb6lsji3xmv0chpczabd85mzy"; depends=[glmnet numDeriv pipeR Rcpp RcppArmadillo RcppParallel]; }; mime = derive2 { name="mime"; version="0.12"; sha256="0j9qbq9jfsp61h2d0xmb87pa2wi8nhb1h2wih7l5drf1sr8i0059"; depends=[]; }; mimi = derive2 { name="mimi"; version="0.2.0"; sha256="1ig34qd37my74nmlv3jcfrj7cnd55alxpf2flf2sssk2ws1y56xh"; depends=[data_table doParallel FactoMineR foreach glmnet rARPACK softImpute]; }; + mimiSBM = derive2 { name="mimiSBM"; version="0.0.1.3"; sha256="1rnpk8wxgx4pncb9axkdwjzh8cp70ykw5zixrsqj60h7drv8snhq"; depends=[blockmodels]; }; mimsy = derive2 { name="mimsy"; version="0.6.2"; sha256="01dy1fryrgq07jdfnxcnks97h0gq632dvqk7hnfs0f5fnx0k0vvf"; depends=[dplyr lubridate magrittr openxlsx]; }; minMSE = derive2 { name="minMSE"; version="0.5.1"; sha256="1fj6njqdc6zn73n2q60x01znwn6xlprjldwy5c13d8rd1n5shccm"; depends=[MASS Rcpp]; }; minSNPs = derive2 { name="minSNPs"; version="0.1.0"; sha256="1wflv7n4rzsdcimwj8carmf8lwspp36ghcb3cw9fyp75dx14pa50"; depends=[BiocParallel data_table]; }; minb = derive2 { name="minb"; version="0.1.0"; sha256="1ay1l58b0jhk27sajrvj4p7kkx4hs2va0am9c76pwbng6vg264mh"; depends=[MASS pscl]; }; mind = derive2 { name="mind"; version="1.1.0"; sha256="01ncwc1kkfa0gfmrnvl93lvzlcjl6r30a3fs65lq15b132rncgwq"; depends=[data_table dplyr JWileymisc MASS Matrix tm]; }; mineCitrus = derive2 { name="mineCitrus"; version="1.0.0"; sha256="031nfhrsc5rlqls3vyrk18lx0pd4ssdk96cmfr4ifaciz0rgv8h2"; depends=[ggplot2]; }; - mineSweepR = derive2 { name="mineSweepR"; version="0.1.0"; sha256="0cvq8cwmyszyyckf2p9p5balvkzqrmrl7br1xlf1jaa35icpchdj"; depends=[ComplexHeatmap dplyr gsignal hms InteractiveComplexHeatmap mgc mmand pals rlang]; }; + mineSweepR = derive2 { name="mineSweepR"; version="0.1.1"; sha256="0bnaa0652pspsd80v66b83np58429g8044941bsmr3apgf8660gj"; depends=[ComplexHeatmap dplyr gsignal hms InteractiveComplexHeatmap mgc mmand pals rlang]; }; mined = derive2 { name="mined"; version="1.0-3"; sha256="1ilfwm42r2mkcdxphqkz7b4szfr4m9gpfi9qid3625sq3rjk622r"; depends=[Rcpp RcppEigen]; }; minerva = derive2 { name="minerva"; version="1.5.10"; sha256="03srkii3rmx40lyr050bnrxil6w0hfv5pr64k339m66ciwyka9ig"; depends=[Rcpp RcppArmadillo]; }; miniCRAN = derive2 { name="miniCRAN"; version="0.2.16"; sha256="1rr5wrh27055ikkvpsf19q9bkfhckafgmrn174iwzjh9s42w3nbq"; depends=[assertthat httr igraph]; }; miniGUI = derive2 { name="miniGUI"; version="0.8-1"; sha256="0qb2fbkjwzn909yrk89d4951bwf8n05i0s265l8v2d4lpns9hc2i"; depends=[]; }; miniMeta = derive2 { name="miniMeta"; version="0.2"; sha256="03r6xwcgchw42irqr8jy5hsbv8brk6f77h4zi9qhhz3zmkryjbw2"; depends=[colourpicker jsonlite markdown meta metafor readxl rhandsontable shiny shinyjs shinyWidgets WriteXLS]; }; - miniPCH = derive2 { name="miniPCH"; version="0.2.0"; sha256="1nji8w5wifdhjnvlpxirj83lgh10z6xvsmb9lfk7yjadw55bcqg3"; depends=[checkmate Rcpp]; }; + miniPCH = derive2 { name="miniPCH"; version="0.3.1"; sha256="12a3yabgac4xabq518djmlrhwlz440pdh05zabxwgms9xnias557"; depends=[checkmate Rcpp RcppArmadillo]; }; miniUI = derive2 { name="miniUI"; version="0.1.1.1"; sha256="1h5h2sc57h95d6bsgs95l26911g38hvjc1v50bc31xl9689l2as5"; depends=[htmltools shiny]; }; minidown = derive2 { name="minidown"; version="0.4.0"; sha256="0h4szlw0dgxbdsw8grnzv50bq0qzzk3lm8zr1zp2pybisfvqaqkr"; depends=[htmltools katex knitr mime rmarkdown sass xfun]; }; minimalRSD = derive2 { name="minimalRSD"; version="1.0.0"; sha256="1p1jpi8lnv952k4c1wjgbgpb0hv4zg0f9qrd43cx0caibkqvhzf7"; depends=[]; }; @@ -13157,7 +13374,7 @@ in with self; { minimax = derive2 { name="minimax"; version="1.1.1"; sha256="1jx90xbxflsi1q2wm3dl4vhz246yxbvhc8zybiv5f7fafam28h6p"; depends=[]; }; minimaxApprox = derive2 { name="minimaxApprox"; version="0.2.2"; sha256="11yky5v76x690cbpi4fxpfazymi9v0h4ix18d4vcccg3pgzvjrn3"; depends=[]; }; minimaxdesign = derive2 { name="minimaxdesign"; version="0.1.5"; sha256="0mraklk79w2r4rx450pkajgh5s9pk7wa3gcbd98xkd03ns11s9v8"; depends=[conf_design DiceDesign DoE_base doParallel doSNOW foreach FrF2 geometry gmp gtools jpeg MaxPro nloptr pdist randtoolbox Rcpp RcppArmadillo]; }; - minioclient = derive2 { name="minioclient"; version="0.0.5"; sha256="02bax8ld39z3nqsqzx0nlqydxyg5mp9r22s5dlcdh5041fgbhl5r"; depends=[fs glue jsonlite processx]; }; + minioclient = derive2 { name="minioclient"; version="0.0.6"; sha256="1caqigfjlga5vv5nk7k0jmzhiakj4xrbvpf43n0byygqqfpxd6i8"; depends=[fs glue jsonlite processx]; }; minpack_lm = derive2 { name="minpack.lm"; version="1.2-4"; sha256="0cg7arnmb7x6v5x487gkc2k4i5gchgdwblrrd0k0vw1w6pza83z3"; depends=[]; }; minqa = derive2 { name="minqa"; version="1.2.6"; sha256="0421b4ysslaqmdgwlz080abis8m4xkcvjq7lx1wywbsz1s2vi9si"; depends=[Rcpp]; }; minque = derive2 { name="minque"; version="2.0.0"; sha256="0pczdg22i3if048i64chzcpnv3ay8p0anmhwjmzm29577z0jgms8"; depends=[]; }; @@ -13165,8 +13382,8 @@ in with self; { minsample2 = derive2 { name="minsample2"; version="0.1.0"; sha256="0q1rp6mdyhcp806a0m0sr4ldm5rj78wk2fljzylxfjs4c734lpbk"; depends=[]; }; mipfp = derive2 { name="mipfp"; version="3.2.1"; sha256="1gxazpg81vj5dywpb6jb29188jw28qil6pfygawa7znnjn3k5ca6"; depends=[cmm numDeriv Rsolnp]; }; mipplot = derive2 { name="mipplot"; version="0.3.1"; sha256="126arvxq6gmaiwk3n3p0slnb1mhs3qf993m4lx95nlmnv612ag66"; depends=[data_table dplyr ggplot2 readr readxl reshape reshape2 rlang shiny shiny_i18n shinyalert shinyWidgets showtext showtextdb stringr tidyr]; }; - mirai = derive2 { name="mirai"; version="0.11.0"; sha256="0d19pazgh16zcyssfha23csb98yhn9sz8xd7cbyqdf547n6yb0xn"; depends=[nanonext]; }; - mirai_promises = derive2 { name="mirai.promises"; version="0.3.1"; sha256="17jdri470qvxp88h97zgblvbrb0pj1msym96sxlg93gmq2xd0ap8"; depends=[later mirai promises]; }; + mirai = derive2 { name="mirai"; version="0.11.3"; sha256="017z5crnbfzc51gz541d0i7dz435ps41qlir43x2yyfad2ah6c8y"; depends=[nanonext]; }; + mirai_promises = derive2 { name="mirai.promises"; version="0.4.1"; sha256="0yi9ks737b3afdbpj088lh33h2hb9bx993j2ag0klbwsfz2dffmi"; depends=[nanonext promises]; }; mirt = derive2 { name="mirt"; version="1.41"; sha256="0qx8qr4zd5jliamsmpr0c321g3k9ks1ki4fvy5lia3xgihp2s6yh"; depends=[dcurver Deriv GPArotation gridExtra lattice Matrix mgcv pbapply Rcpp RcppArmadillo vegan]; }; mirtCAT = derive2 { name="mirtCAT"; version="1.13"; sha256="1vlv93wjwj3ajf0mqjz38bi9fdk1sl0wqyqr7kjhhdj4znhrprbs"; depends=[lattice lpSolve markdown mirt pbapply Rcpp RcppArmadillo shiny]; }; mirtjml = derive2 { name="mirtjml"; version="1.4.0"; sha256="1zvm8acywpzi87lz0hpxmr8c9kyqkbx0490q3vlwxd90ffcdp9ml"; depends=[GPArotation Rcpp RcppArmadillo]; }; @@ -13175,12 +13392,13 @@ in with self; { misaem = derive2 { name="misaem"; version="1.0.1"; sha256="05m7k8mgbpkv5szislvf3q45pk5f8z54ibddhi8pkhwa9w00xkjk"; depends=[MASS mvtnorm norm]; }; misc3d = derive2 { name="misc3d"; version="0.9-1"; sha256="0r9x57s63kx9f6dgam2nhbziq8nrs9wd8pk7g76hds2kw46vnyx0"; depends=[]; }; miscF = derive2 { name="miscF"; version="0.1-5"; sha256="0g6wk2zxqq6j949hnbvwmfd72y25zjfbrfrfxsj21q84w41fgjkb"; depends=[MASS MCMCpack mvtnorm R2jags]; }; - miscFuncs = derive2 { name="miscFuncs"; version="1.5-6"; sha256="0v0ipq2fshjrpkl3mfy8wyf3vq7wmcxf1kppdbm500q9jan7r85i"; depends=[mvtnorm roxygen2]; }; + miscFuncs = derive2 { name="miscFuncs"; version="1.5-7"; sha256="02kv44nyrigvr2ha3cn2bq83gpvjb3rg8b6czaf8qvzfcvi4whyp"; depends=[mvtnorm roxygen2]; }; miscIC = derive2 { name="miscIC"; version="0.1.0"; sha256="0pnwc3b318xxnmb7scrj4qkqlvqfyczspdg496kl0ixsiaafr1ad"; depends=[nnls]; }; miscTools = derive2 { name="miscTools"; version="0.6-28"; sha256="089vb57ynqzqa9ppalqfgn0n5wazfjng2kc7z4wgb2ll40hjyk5x"; depends=[digest]; }; - misclassGLM = derive2 { name="misclassGLM"; version="0.3.2"; sha256="1b344dy5fm45jkjrqcx16905n9x0iwihr73mq2m0qfq7ay87nsrh"; depends=[bigmemory foreach MASS Matrix mlogit numDeriv ucminf]; }; + misclassGLM = derive2 { name="misclassGLM"; version="0.3.5"; sha256="0iph5nz4hnfgx32xwc8z201ap18b543x8by6hcpkbk8jcbxswhjq"; depends=[foreach MASS Matrix mlogit numDeriv ucminf]; }; miscset = derive2 { name="miscset"; version="1.1.0"; sha256="1gwi7jnqdf2fa8yk8gmcc7dcv72bbdl7yj3yccj3r5jjk41vdp91"; depends=[data_table devtools ggplot2 gridExtra Rcpp xtable]; }; miselect = derive2 { name="miselect"; version="0.9.0"; sha256="0dfqni7r5zwdvwmrmvqhycmxhazivz6vnz2ccjy0hyfad29g0v7s"; depends=[]; }; + misha = derive2 { name="misha"; version="4.2.8"; sha256="0s4c3ryjg7l4r217x0xdbw2ha22h3gbcl2s70hwqzd9qmikjvzdn"; depends=[curl magrittr]; }; mispitools = derive2 { name="mispitools"; version="1.0.0"; sha256="1s54dm6c48ahib2p5firx3l0fxqxrcvfpk02smisbxna85vbfwd5"; depends=[DirichletReg dplyr forrel ggplot2 highcharter patchwork pedtools plotly purrr reshape2 shiny tidyr tidyverse]; }; mispr = derive2 { name="mispr"; version="1.0.0"; sha256="166piax3f7di8h0i07fbdx45lxz1p47j378v6yl6zdc3525adpjx"; depends=[e1071 MASS penalized]; }; misreport = derive2 { name="misreport"; version="0.1.1"; sha256="1f78zcw4cg51mjvflhwd64hip2gj8x9ng1mhh4w43yv3x8hmbd6h"; depends=[mvtnorm numDeriv VGAM]; }; @@ -13189,10 +13407,11 @@ in with self; { missDeaths = derive2 { name="missDeaths"; version="2.7"; sha256="1c8vbc7r1g4dkngmal6iqg7piw656h1vc6cmpkv16vjn4j0w2n2c"; depends=[cmprsk MASS mitools Rcpp relsurv rms survival]; }; missDiag = derive2 { name="missDiag"; version="1.0.1"; sha256="04zd3nds44sy7nz73kdq9wjis3r9zyp0kda54mfqps1sh9jnizlq"; depends=[cobalt Formula]; }; missForest = derive2 { name="missForest"; version="1.5"; sha256="13c38hpl60ca1kwyv61cxsla6ccmsj4qzp0vrxcq7b827fh5aw21"; depends=[doRNG foreach iterators itertools randomForest]; }; - missMDA = derive2 { name="missMDA"; version="1.18"; sha256="1s7ph89y0mrksdi73nnjnxl2354401ny8ziijzf036rcsiyvl8m5"; depends=[doParallel FactoMineR foreach ggplot2 mice mvtnorm]; }; + missForestPredict = derive2 { name="missForestPredict"; version="1.0"; sha256="0p9bmphv77f6xxdvnz4zzalbbv8ch3bdyqqy33r78iimg5rnmi5x"; depends=[ranger]; }; + missMDA = derive2 { name="missMDA"; version="1.19"; sha256="0p76jlzqayhwqwinaxhf69s3c5hxk4hmncvw4dsyybwvha25hrzr"; depends=[doParallel FactoMineR foreach ggplot2 mice mvtnorm]; }; missMethods = derive2 { name="missMethods"; version="0.4.0"; sha256="1vsgc315px3x44rqlsj6r6lyh9flqjibgpvbx0crd8b644ab6qh2"; depends=[mvtnorm]; }; - missRanger = derive2 { name="missRanger"; version="2.3.0"; sha256="0vnr0l019xmilv297kydpkn4f19amqc2hlrkcbaxg4wh69svmcyf"; depends=[FNN ranger]; }; - missSBM = derive2 { name="missSBM"; version="1.0.3"; sha256="16krbmi085zxrwliwz9r6x5hmkaf9w9ds384y50dnapi91232diw"; depends=[future_apply ggplot2 igraph magrittr Matrix nloptr R6 Rcpp RcppArmadillo rlang RSpectra sbm]; }; + missRanger = derive2 { name="missRanger"; version="2.4.0"; sha256="1zycbpxqc04f65nqfv0zdi0q5kp9kmaw7s868v959198a4r23lc1"; depends=[FNN ranger]; }; + missSBM = derive2 { name="missSBM"; version="1.0.4"; sha256="1gw485bn7mddj5i555clp3saxas77r9r4970ahf1y3vpk43wjj02"; depends=[future_apply ggplot2 igraph magrittr Matrix nloptr R6 Rcpp RcppArmadillo rlang RSpectra sbm]; }; missSOM = derive2 { name="missSOM"; version="1.0.1"; sha256="15cqqz6f2npsz78yhj3ialzmlx7a8jsf27gfmmj4h68r01czyhs1"; depends=[kpodclustr Rcpp]; }; missingHE = derive2 { name="missingHE"; version="1.5.0"; sha256="0my6a768w7lixh6cw453bl2nrb5aqdiri309p5kp4psp17pzllak"; depends=[bayesplot BCEA coda ggmcmc ggplot2 ggpubr ggthemes gridExtra loo mcmcplots mcmcr R2jags]; }; missoNet = derive2 { name="missoNet"; version="1.2.0"; sha256="1k7959wjxxpzgrnwil7n51zf76zyri8c2m4m5h2w9az5pil2qmf0"; depends=[circlize ComplexHeatmap glasso mvtnorm pbapply Rcpp RcppArmadillo scatterplot3d]; }; @@ -13200,13 +13419,13 @@ in with self; { mistat = derive2 { name="mistat"; version="2.0.4"; sha256="1hr1gps0w3mfphnc221c6k7h7rwk1f7g6nxkxkb9g8sdacr7ijhh"; depends=[]; }; mistr = derive2 { name="mistr"; version="0.0.6"; sha256="103gvzcyrxscpsd8kv6zj8zx3r9mlbdjwd56msy0ngzcgrb4sb9d"; depends=[bbmle]; }; mistral = derive2 { name="mistral"; version="2.2.1"; sha256="19iq9a3k7xyxafvm73ib8mj1k7ys69aznplqhidl5z8vdl92dmb7"; depends=[DiceKriging doParallel e1071 emoa foreach ggplot2 iterators Matrix mvtnorm quadprog Rcpp]; }; - misty = derive2 { name="misty"; version="0.5.3"; sha256="05rb9pvklcxqypy35iba5rdkwsh7n0892ln3ycf4qx00hm79akcx"; depends=[ggplot2 haven lavaan lme4 nlme norm readxl rstudioapi writexl]; }; + misty = derive2 { name="misty"; version="0.5.4"; sha256="0gv3ax0wj70had5q4wfh8przmv6pfzm8amlrbbaby7m6h7x8i42m"; depends=[ggplot2 haven lavaan lme4 nlme norm readxl rstudioapi writexl]; }; mitml = derive2 { name="mitml"; version="0.4-5"; sha256="1szfw993ma4qn377bab08bkvm4s0sxs5x2hdcj9kgk47661fqsh5"; depends=[haven jomo pan]; }; mitools = derive2 { name="mitools"; version="2.4"; sha256="0c2x2n1p53lcw0vx4vmy5j7m2f95i7g2iwbryl89imr99rvz617j"; depends=[DBI]; }; mitre = derive2 { name="mitre"; version="1.0.0"; sha256="0r5phzxiibwwhx3qh623grfy070c3vzm4q07rzhsp5q5ycb5jhn5"; depends=[dplyr igraph jsonlite plyr RJSONIO rlang stringr tidyr]; }; mix = derive2 { name="mix"; version="1.0-11"; sha256="1q565ymc1lh24lv0v70qwqb0p0nagg2jcz2nf7dz964bsnp20wjf"; depends=[]; }; - mixAK = derive2 { name="mixAK"; version="5.6"; sha256="183bhlp2h3x5rfxfx21gg2wrz3ns458w9ygna9v51iagi5zzc1k5"; depends=[coda colorspace fastGHQuad lme4 mnormt]; }; - mixAR = derive2 { name="mixAR"; version="0.22.7"; sha256="1r8fbmwk75h41336vfc94qf5k1wy9hkyd2vjzasv8vxqdb66cwng"; depends=[BB combinat e1071 fGarch gbutils MCMCpack mvtnorm permute Rdpack timeDate]; }; + mixAK = derive2 { name="mixAK"; version="5.7"; sha256="08n6shkibidqjmxjpjny48drxk3lmmnylh9l9ad3lrf8i2ixriqp"; depends=[coda colorspace fastGHQuad lme4 mnormt]; }; + mixAR = derive2 { name="mixAR"; version="0.22.8"; sha256="1fr3i54yvxqvh78pgn8y5hdwp1sf00gl9shg5bc7nnmmm84ki78q"; depends=[BB combinat e1071 fGarch gbutils MCMCpack mvtnorm permute Rdpack timeDate]; }; mixIndependR = derive2 { name="mixIndependR"; version="1.0.0"; sha256="0wjzs56axdjas2a9ynw3gd78h0fgcfjpx3bk7nm895lmadyzih6y"; depends=[data_table]; }; mixKernel = derive2 { name="mixKernel"; version="0.9"; sha256="1sinbq30f57ihqy57vf69hq0c6f54j7w4dbx46vz39b7kx5319nz"; depends=[corrplot ggplot2 LDRTools markdown Matrix mixOmics phyloseq psych quadprog reticulate vegan]; }; mixPHM = derive2 { name="mixPHM"; version="0.7-2"; sha256="1wvkdb9zj2j8dpppnyins05rg877zbydqsl3qaan62wznkknxcac"; depends=[lattice survival]; }; @@ -13236,14 +13455,14 @@ in with self; { mixpoissonreg = derive2 { name="mixpoissonreg"; version="1.0.0"; sha256="1pk45p96kwl3gvi5523vm824s1bb5aqpn9qqpqy8kjy2pd2a4k32"; depends=[dplyr Formula gamlss gamlss_dist generics ggplot2 ggrepel gridExtra lmtest magrittr pbapply Rfast rlang statmod tibble]; }; mixreg = derive2 { name="mixreg"; version="2.0-10"; sha256="1vmidnhb899lmprybym71w0l869msrgvlqr3099kwj05sph85pwm"; depends=[]; }; mixsmsn = derive2 { name="mixsmsn"; version="1.1-10"; sha256="1w31br65la62zw847bw4bz0shvgna680wagxnqmc71kpy4a9mv3x"; depends=[mvtnorm]; }; - mixsqp = derive2 { name="mixsqp"; version="0.3-48"; sha256="02cjg33m5iqziyy0xi11wvbm5qnlgfy51r1dbpjzyhqsrv1dfx48"; depends=[irlba Rcpp RcppArmadillo]; }; + mixsqp = derive2 { name="mixsqp"; version="0.3-54"; sha256="13pv3mmz514kl4svxqwyk5b241dy1q52khwdc6rmh712ia8xxl7p"; depends=[irlba Rcpp RcppArmadillo]; }; mixtools = derive2 { name="mixtools"; version="2.0.0"; sha256="03by64xi7yka0hzc1qyz1jdqzah6isvr3cdsc7g5v6hb4f178kl5"; depends=[kernlab MASS plotly scales segmented survival]; }; mixtox = derive2 { name="mixtox"; version="1.4.0"; sha256="1lca26s80f92c18wkpp5gs2ifylnyqyg933w7r5ir3xvsfbk0lfh"; depends=[minpack_lm]; }; mixtur = derive2 { name="mixtur"; version="1.2.1"; sha256="02hybyc647jhl3jcyv26kcg1ijq4qlami18m6xyckygw8m2fb85l"; depends=[dplyr ggplot2 rlang tidyr]; }; mixture = derive2 { name="mixture"; version="2.0.6"; sha256="08p1nziyflkz992i74br4mpc0j1npp947jwvy9hvmxir0mnzchi8"; depends=[BH lattice Rcpp RcppArmadillo RcppGSL]; }; - mixvlmc = derive2 { name="mixvlmc"; version="0.1.1"; sha256="04g56kqzbm0gjdn0jnxh6cpjpvz764ir6333szymwz3z7dlk0h6x"; depends=[assertthat butcher nnet pROC Rcpp rlang stringr VGAM withr]; }; + mixvlmc = derive2 { name="mixvlmc"; version="0.2.1"; sha256="1bx9qvdi5fq69bwa25l9sqcdyihswjhmqrsslmnqfq7wzfxy3d3q"; depends=[assertthat butcher ggplot2 nnet pROC Rcpp rlang stringr VGAM withr]; }; mize = derive2 { name="mize"; version="0.2.4"; sha256="1dfhldxsm1il9avfxvaiir9r878dp7swyc9c8ilm6llx208sd5d5"; depends=[]; }; - mizer = derive2 { name="mizer"; version="2.4.1"; sha256="1y708615jp8cm48yg6rbqjr58kppca09h2pyzqpd6j3hlz8fm9nj"; depends=[assertthat deSolve dplyr ggplot2 ggrepel lifecycle lubridate plotly plyr progress Rcpp reshape2 rlang]; }; + mizer = derive2 { name="mizer"; version="2.5.0"; sha256="0j2fyp74zkblf700zys5v4xsj4dyls2y23cbnjq97sgyfblfmbmx"; depends=[assertthat deSolve dplyr ggplot2 ggrepel lifecycle lubridate plotly plyr progress Rcpp reshape2 rlang]; }; mkde = derive2 { name="mkde"; version="0.2"; sha256="0ihf3ahlppriba9j29zs7gfjxl49nsrrinnjzcxgca1yc5fikqcf"; depends=[raster Rcpp sp]; }; mkin = derive2 { name="mkin"; version="1.2.6"; sha256="1k90z1kqk57rib0f7rm23qmcvk942b0rggbjfyc7jzrba3v65qpb"; depends=[deSolve inline lmtest nlme numDeriv pkgbuild R6 rlang saemix vctrs]; }; mknapsack = derive2 { name="mknapsack"; version="0.1.0"; sha256="1kzmx7d512681a4hjirfgcd7a8rvndb4da66p16gms5nnxzsby9c"; depends=[assertthat data_table lpSolve]; }; @@ -13263,7 +13482,7 @@ in with self; { mlexperiments = derive2 { name="mlexperiments"; version="0.0.2"; sha256="0bf515jgwm248l0cryacsr3xlh18zy3wx91v0kwwqackg74xa12q"; depends=[data_table kdry progress R6 splitTools]; }; mlf = derive2 { name="mlf"; version="1.2.1"; sha256="09ihnibpknpp26hdlbxyr99yz7z0n8qpsjs5aq3zngng0yh3wdn9"; depends=[]; }; mlfit = derive2 { name="mlfit"; version="0.5.3"; sha256="0nyk5vmy2gkpz022djacy80gibskv96z0rsmjz2rw14zhc5kizsh"; depends=[BB dplyr forcats hms kimisc lifecycle Matrix plyr rlang tibble wrswoR]; }; - mlflow = derive2 { name="mlflow"; version="2.7.1"; sha256="1ydf452xhmapshxxza5phsgn44adxivhwmv2wh6a3d30mzm9zk9f"; depends=[base64enc forge fs git2r glue httpuv httr ini jsonlite openssl processx purrr rlang swagger tibble withr yaml zeallot]; }; + mlflow = derive2 { name="mlflow"; version="2.9.2"; sha256="181r5mrb6bz2krbh435yn1i79kq9ql73m37qcsv8mqq7m8dg6v1h"; depends=[base64enc forge fs git2r glue httpuv httr ini jsonlite openssl processx purrr rlang swagger tibble withr yaml zeallot]; }; mlim = derive2 { name="mlim"; version="0.3.0"; sha256="16p3nprnxc0cghfbwcs3hf57aasqpvd4qv3wajhzrajqhmclzn0q"; depends=[curl h2o md_log memuse mice missRanger]; }; mllrnrs = derive2 { name="mllrnrs"; version="0.0.2"; sha256="14l3s3zzy152rqliqsxgk4qx0ldrp67phq9k1wkf9p1kdc6i3yfk"; depends=[data_table kdry mlexperiments R6]; }; mlmRev = derive2 { name="mlmRev"; version="1.0-8"; sha256="0ln4nazhc1prnlmvhfzhx268vx3klb0xnz1nsiwh0pwyskskyzym"; depends=[lme4]; }; @@ -13271,47 +13490,49 @@ in with self; { mlmhelpr = derive2 { name="mlmhelpr"; version="0.1.0"; sha256="1liqawmdz3a8jxnlbhxx9iz5nlybkyz7jr719y0xkqz4h741bj5s"; depends=[lme4 mathjaxr Rdpack]; }; mlmi = derive2 { name="mlmi"; version="1.1.2"; sha256="1nkg7h0r716yv9y6xnx8qcpvrqr6cxlhqrcyiihkwgwbmkgkp5sz"; depends=[cat gsl MASS Matrix mix nlme norm]; }; mlmm_gwas = derive2 { name="mlmm.gwas"; version="1.0.6"; sha256="14xp8k7sww1skyw5l2006gpaw2c6yrri5nmfx4yav4vqdlhcj2k1"; depends=[coxme Matrix multcomp multcompView sommer]; }; - mlmpower = derive2 { name="mlmpower"; version="1.0.2"; sha256="1773cbkby7ll0dpv9ymqg63sq7b2ladxlh0wlswj7ks7rrn07z05"; depends=[cli lme4 lmerTest varTestnlme]; }; + mlmpower = derive2 { name="mlmpower"; version="1.0.4"; sha256="1vh3cy8n3dlzb6wb2xkkjs3jd1gdxjbch09lhfq2sclk19h1ryy4"; depends=[cli lme4 lmerTest varTestnlme]; }; mlmtools = derive2 { name="mlmtools"; version="1.0.2"; sha256="1fwa0cwrrhzxr5zkvmf0q1w2wlrhj58lwmrvqxfn00v0v9d6bi0g"; depends=[ggplot2 lme4]; }; mlmts = derive2 { name="mlmts"; version="1.1.1"; sha256="10xy4qzdik1rjs11ql798ig7y5cm3hjc61n5dhxfzpi1w0wk3smi"; depends=[AID caret ClusterR complexplus DescTools dtw e1071 fda_usc forecast freqdom geigen ggplot2 igraph MASS Matrix MTS multiwave pracma pspline psych quantspec randomForest ranger Rdpack Rfast TSA TSclust TSdist tseries tseriesChaos tsfeatures waveslim]; }; mlogit = derive2 { name="mlogit"; version="1.1-1"; sha256="0hyi6gi03n895iydrfr1ba2ifbsd6lyjyhkq62d95ghhniysjgkg"; depends=[dfidx Formula lmtest MASS Rdpack statmod zoo]; }; mlogitBMA = derive2 { name="mlogitBMA"; version="0.1-7"; sha256="0q8c5897z8f519nf6p55ksc610a9dbpnah2rr4srij4gs9a4clx1"; depends=[abind BMA maxLik]; }; - mlpack = derive2 { name="mlpack"; version="4.2.1"; sha256="0d2b6mldv3cnc4pk27d5vcb9bcm835kydxn0n0adalm54c8my74a"; depends=[Rcpp RcppArmadillo RcppEnsmallen]; }; + mlpack = derive2 { name="mlpack"; version="4.3.0"; sha256="1v631q7n3qn7zrfj6j7dnsmr419qs2in8kx0czwh9gkkms7inwp6"; depends=[Rcpp RcppArmadillo RcppEnsmallen]; }; mlpwr = derive2 { name="mlpwr"; version="1.1.0"; sha256="18w0vklxy61v0r33xi57j3s76iwsb2cs2cjhg1gjyxzl07byj89j"; depends=[DiceKriging digest ggplot2 randtoolbox rgenoud rlist WeightSVM]; }; mlquantify = derive2 { name="mlquantify"; version="0.2.0"; sha256="1fpwvix0f4bmqb1y1b6wryndqp6j24dwsspbfx1zrnhzwj1v4i9i"; depends=[caret FNN randomForest]; }; mlr = derive2 { name="mlr"; version="2.19.1"; sha256="00jjhvaqifj6glqsyzixlp56bvlch5smck8kk3klcmwx9pasyllx"; depends=[backports BBmisc checkmate data_table ggplot2 parallelMap ParamHelpers stringi survival XML]; }; - mlr3 = derive2 { name="mlr3"; version="0.16.1"; sha256="09klavihc2j6wsd9m2ycppl2ir85z5cxlxl9h6ay9skacylk559n"; depends=[backports checkmate data_table evaluate future future_apply lgr mlbench mlr3measures mlr3misc palmerpenguins paradox parallelly R6 uuid]; }; - mlr3batchmark = derive2 { name="mlr3batchmark"; version="0.1.0"; sha256="16r8j5hzx975acs5b91wj2pk9w3hwh070cqv4swlmrj05nbid975"; depends=[batchtools checkmate data_table lgr mlr3 mlr3misc uuid]; }; + mlr3 = derive2 { name="mlr3"; version="0.17.2"; sha256="0kcny3wxc7qc2538hxxdzs9bw4pq55s4abhlnpf1r13b2gkns323"; depends=[backports checkmate data_table evaluate future future_apply lgr mlbench mlr3measures mlr3misc palmerpenguins paradox parallelly R6 RhpcBLASctl uuid]; }; + mlr3batchmark = derive2 { name="mlr3batchmark"; version="0.1.1"; sha256="1qirzjmb17y1rzq69x1lpl56qk5w63zjq30if97vfab3spsd2ilf"; depends=[batchtools checkmate data_table lgr mlr3 mlr3misc uuid]; }; mlr3benchmark = derive2 { name="mlr3benchmark"; version="0.1.6"; sha256="1bhn0lm0k9dm9mbji6cwgqkwsa1qg928fbjs8chra9s3d3bzcb0x"; depends=[checkmate data_table ggplot2 mlr3misc R6]; }; mlr3cluster = derive2 { name="mlr3cluster"; version="0.1.8"; sha256="0qxh80qfb06wdivja6cy9qwpma27ic66xis0iz7lfd09dvfmrb8w"; depends=[backports checkmate clue cluster data_table fpc mlr3 mlr3misc paradox R6]; }; mlr3data = derive2 { name="mlr3data"; version="0.7.0"; sha256="04hwmj8cdszwgd845va26pgzdw0k4cm025zjrmp3fr7ypp73mirg"; depends=[]; }; - mlr3db = derive2 { name="mlr3db"; version="0.5.1"; sha256="00zg5skc7l5i84djmq3v5f1ln0959jx24gfazx49vpyxbcs0p5dg"; depends=[backports checkmate data_table mlr3 mlr3misc R6]; }; + mlr3db = derive2 { name="mlr3db"; version="0.5.2"; sha256="1cq22h9yj27ighh4clyak1xwx2wb5v4803hd7lrhnlgzs85dmhj2"; depends=[backports checkmate data_table mlr3 mlr3misc R6]; }; mlr3fairness = derive2 { name="mlr3fairness"; version="0.3.2"; sha256="0rm6l50prwjjy55p14zs9mkdrczbyl7f63fqsmh7r5xjahcsnfi7"; depends=[checkmate data_table ggplot2 mlr3 mlr3learners mlr3measures mlr3misc mlr3pipelines paradox R6 rlang]; }; mlr3filters = derive2 { name="mlr3filters"; version="0.7.1"; sha256="07qgk26ls8wgf9k82xlnsjwi7mpnpgi7i2yplfb5hsqn8nfj6hcc"; depends=[backports checkmate data_table mlr3 mlr3misc paradox R6]; }; mlr3fselect = derive2 { name="mlr3fselect"; version="0.11.0"; sha256="0z47gygf1s4967gj9n5dsjymy9bcr7j8c7s3z7k4qmbnh71nn9w6"; depends=[bbotk checkmate data_table lgr mlr3 mlr3misc paradox R6]; }; mlr3hyperband = derive2 { name="mlr3hyperband"; version="0.4.5"; sha256="0ynfzb7y0vmrx7pr6681112nhzdfvdj5flpr6jab2ancgkg22syl"; depends=[bbotk checkmate data_table lgr mlr3 mlr3misc mlr3tuning paradox R6]; }; - mlr3learners = derive2 { name="mlr3learners"; version="0.5.6"; sha256="1m0psjqcl2pfy73wmc29vyz122v0kqmws6d0dgl7wsy1csfjsjm2"; depends=[checkmate data_table mlr3 mlr3misc paradox R6]; }; + mlr3learners = derive2 { name="mlr3learners"; version="0.5.8"; sha256="0q44qmd9zfc68jl2zz684rx9744g83vd7z40dck8cdvnnrxcff5g"; depends=[checkmate data_table mlr3 mlr3misc paradox R6]; }; mlr3mbo = derive2 { name="mlr3mbo"; version="0.2.1"; sha256="10z3595114kl3yc0kyxk9ca0ahsxmml4di7pvh4z20iv8n57xgc6"; depends=[bbotk checkmate data_table lgr mlr3 mlr3misc mlr3tuning paradox R6 spacefillr]; }; mlr3measures = derive2 { name="mlr3measures"; version="0.5.0"; sha256="0k0i1xx63lds1870p2ljy1dlp2i376gdd0sq9s4xiqljqjb8va57"; depends=[checkmate PRROC]; }; mlr3misc = derive2 { name="mlr3misc"; version="0.13.0"; sha256="0b565hy86bcgjv8k9qipkcgsag6jiiv1jx5lgi1iddcf8rg6bind"; depends=[backports checkmate data_table digest R6]; }; mlr3oml = derive2 { name="mlr3oml"; version="0.9.0"; sha256="08px4k8qrwwsay0f9h1nkpf7w30z0n4w189q2ijhb3kbrd0jhf1j"; depends=[backports bit64 checkmate curl data_table jsonlite lgr mlr3 mlr3misc paradox R6 stringi uuid withr]; }; - mlr3pipelines = derive2 { name="mlr3pipelines"; version="0.5.0-1"; sha256="1pn6zi1qy4ql7zkkzmx52b5l9agppr1rlv3pdnm1dy8y0yc7imhd"; depends=[backports checkmate data_table digest lgr mlr3 mlr3misc paradox R6 withr]; }; + mlr3pipelines = derive2 { name="mlr3pipelines"; version="0.5.0-2"; sha256="0iv09qmr1gpipcylw8mp1y7kqjljy8p5sx466l1wxfaqkf7kw15j"; depends=[backports checkmate data_table digest lgr mlr3 mlr3misc paradox R6 withr]; }; + mlr3resampling = derive2 { name="mlr3resampling"; version="2024.1.8"; sha256="0fzh0b3bpg2llqgl0bm7v72h0ffy3dgr310gw8lsgv28b9i7sc1g"; depends=[checkmate data_table mlr3 mlr3misc paradox R6]; }; mlr3shiny = derive2 { name="mlr3shiny"; version="0.3.0"; sha256="0rv5ybg6l1n7j6gq8wmvl1gd1mdmqd52vl91hkpv9k1l1w8m8mph"; depends=[data_table dplyr DT Metrics mlr3 mlr3learners mlr3measures mlr3pipelines patchwork plyr purrr shiny shinyalert shinydashboard shinyjs shinyWidgets stringr]; }; mlr3spatial = derive2 { name="mlr3spatial"; version="0.4.1"; sha256="0nwl97zirdnmhd322wxnwrscwwv5vym6nagmhj5wr80d4jwdmy45"; depends=[checkmate data_table lgr mlr3 mlr3misc R6 sf terra]; }; - mlr3spatiotempcv = derive2 { name="mlr3spatiotempcv"; version="2.1.0"; sha256="1dk8n0jw5461ngnv3iazm3dhnlsj53ymn19lnh346mwyk7g5vr06"; depends=[checkmate data_table ggplot2 mlr3 mlr3misc paradox R6]; }; - mlr3tuning = derive2 { name="mlr3tuning"; version="0.19.0"; sha256="1iz7izmkx11jma95305wq8aapi4dmqg20flgxxvdvrfy6hf98k33"; depends=[bbotk checkmate data_table lgr mlr3 mlr3misc paradox R6]; }; + mlr3spatiotempcv = derive2 { name="mlr3spatiotempcv"; version="2.2.0"; sha256="0iv8jj96csnkd4ghk1qivmkqjz0f72qlkvikqp4qv0z703962km5"; depends=[checkmate data_table ggplot2 mlr3 mlr3misc paradox R6]; }; + mlr3tuning = derive2 { name="mlr3tuning"; version="0.19.2"; sha256="1d27m6yzwr7chpf19q6mwpj2fyz9vv8k6nbg8z9615hmbp96lan5"; depends=[bbotk checkmate data_table lgr mlr3 mlr3misc paradox R6]; }; mlr3tuningspaces = derive2 { name="mlr3tuningspaces"; version="0.4.0"; sha256="1h5nz992i4bkgfg0gjnyfkiqfg09d15d6h4r6gnd7rbim73807xp"; depends=[checkmate data_table mlr3 mlr3misc mlr3tuning paradox R6]; }; mlr3verse = derive2 { name="mlr3verse"; version="0.2.8"; sha256="0ld4vch1qdq3gh8vhj38s2wz7acn5z7f8hxmnwnrq22g44gckd8s"; depends=[bbotk data_table mlr3 mlr3cluster mlr3data mlr3filters mlr3fselect mlr3hyperband mlr3learners mlr3mbo mlr3misc mlr3pipelines mlr3tuning mlr3tuningspaces mlr3viz paradox]; }; - mlr3viz = derive2 { name="mlr3viz"; version="0.6.1"; sha256="0vw220kl330ib989hhaqhdyrba90bxc2g2cgnyjhid1flk3wqw73"; depends=[checkmate data_table ggplot2 mlr3misc scales viridis]; }; + mlr3viz = derive2 { name="mlr3viz"; version="0.7.0"; sha256="08kgg6fxzvj5xfx316aj4dy1xcrsflns24sj40jj6g14dyjnh26f"; depends=[checkmate data_table ggplot2 mlr3misc scales viridis]; }; mlrCPO = derive2 { name="mlrCPO"; version="0.3.7-6"; sha256="1xvfh5b1806ycdh8brnl63cd3fzr919sdi82acq5n59pz39fz4cc"; depends=[backports BBmisc checkmate mlr ParamHelpers stringi]; }; mlrMBO = derive2 { name="mlrMBO"; version="1.1.5.1"; sha256="16fwj7m28g4km7yalqppxmh3lw2jln0z072l6awia38qkdg6xwhc"; depends=[backports BBmisc checkmate data_table lhs mlr parallelMap ParamHelpers smoof]; }; mlrintermbo = derive2 { name="mlrintermbo"; version="0.5.0"; sha256="1nyaqf6vkckdh7jb27iwv5dnvrh4bp0kkc5jzbqkyi8af11phg1l"; depends=[backports bbotk callr checkmate data_table lhs mlr3misc mlr3tuning paradox R6]; }; mlrpro = derive2 { name="mlrpro"; version="0.1.2"; sha256="1j8w8ji1n6cahcbyi1q4zq8gmhpcl15pb97f7bl1km29f4x4f272"; depends=[car dplyr MASS]; }; + mlrv = derive2 { name="mlrv"; version="0.1.1"; sha256="1r6q8wakvyz0d1fjc0xpl66yxj0c9jr721yx3h3986x6gi6s0k81"; depends=[doParallel foreach magrittr mathjaxr numDeriv Rcpp RcppArmadillo xtable]; }; mlsbm = derive2 { name="mlsbm"; version="0.99.2"; sha256="1p6fflhjbbyzx51hb77aak1kdabjrmzd7b47vdcanhb0vd263aby"; depends=[Rcpp RcppArmadillo]; }; mlsjunkgen = derive2 { name="mlsjunkgen"; version="0.1.2"; sha256="1icsssgi5xf420ajagr9nw0wgbxpfm7dsd5b7s77vyh5hsfzm1z3"; depends=[]; }; mlstrOpalr = derive2 { name="mlstrOpalr"; version="1.0.2"; sha256="0lifas5irjhyrys6ykbm1pji7rnhr4mg1f0asi26i8pk3048ri25"; depends=[dplyr fabR madshapR opalr rlang stringr tidyr]; }; mlsurvlrnrs = derive2 { name="mlsurvlrnrs"; version="0.0.2"; sha256="0xhwcx7xzzdvm6g51pr0r4ggphxarvzjj6gvndhylbf89wc9vxwk"; depends=[data_table kdry mlexperiments mllrnrs R6]; }; - mlt = derive2 { name="mlt"; version="1.4-9"; sha256="0a5nhm8pkadl26gz285klpj8m6jla2zq230g5r51hkyvm2vxcz74"; depends=[alabama basefun BB coneproj Matrix nloptr numDeriv sandwich survival variables]; }; + mlt = derive2 { name="mlt"; version="1.5-0"; sha256="0l44l3p3f6px8kamli3fq479jy99wjfy8q8hkqjlwidr261bv6mz"; depends=[alabama basefun BB coneproj Matrix nloptr numDeriv sandwich survival variables]; }; mlt_docreg = derive2 { name="mlt.docreg"; version="1.1-7"; sha256="05vrgddg4j2yc6b07dqypid9gvvpilv9ky2bgwml0az629666111"; depends=[eha flexsurv lattice mlt multcomp numDeriv survival truncreg]; }; mltest = derive2 { name="mltest"; version="1.0.1"; sha256="14gyssfph088v936mpywmd4y8z9vdv0zk8638vlg23j8cf5j4al2"; depends=[]; }; mltools = derive2 { name="mltools"; version="0.3.5"; sha256="045v28w7vz1zjxim8vfc6ncvg2mavr1q332x0hzlqpfzrk7gz4vh"; depends=[data_table Matrix]; }; @@ -13319,7 +13540,7 @@ in with self; { mma = derive2 { name="mma"; version="10.7-1"; sha256="0zqkqzi27qg4q6mirhw5gzjbsd9i06rxzr61zmmsw33wg5a6lgd3"; depends=[car gbm gplots lattice survival]; }; mmabig = derive2 { name="mmabig"; version="3.2-0"; sha256="1ji832vs9gfzpl1ij85dgmkpqr3qy4p7r6kvrk0y3q3agjxw1gky"; depends=[car glmnet gplots mma survival]; }; mmand = derive2 { name="mmand"; version="1.6.3"; sha256="18bl3s0x0rm3yg7zjamhl6rn2bknxg75ilqgi28ikzbrp2k5sdzw"; depends=[Rcpp]; }; - mmap = derive2 { name="mmap"; version="0.6-21"; sha256="0q1hmr9431fl00xqr8008jpna9rlv303dvibz2pr9ifg9vkcw7ab"; depends=[]; }; + mmap = derive2 { name="mmap"; version="0.6-22"; sha256="0v1qniz0jdp6fay93plv5j200s1pybyyxpfjhgcdjzm7rag8d1jd"; depends=[]; }; mmapcharr = derive2 { name="mmapcharr"; version="0.3.0"; sha256="175qb6ay6zlcdcxzc86lmlddfzjc8j8i1b8cvi2q0j6nbl2kl50r"; depends=[Rcpp rmio]; }; mmaqshiny = derive2 { name="mmaqshiny"; version="1.0.0"; sha256="0v44hd7h9d8hdd2avwwwwc0a8rzm5ij3yhryxkrw7bwvr12zsp17"; depends=[Cairo caTools data_table dplyr DT ggplot2 htmltools leaflet lubridate plotly shiny shinyjs stringr XML xts zoo]; }; mmb = derive2 { name="mmb"; version="0.13.3"; sha256="07nni04fb0gprma368axzz303db12hp22fz1a0xwh3bbh6n7zb9g"; depends=[doParallel foreach Rdpack]; }; @@ -13331,7 +13552,8 @@ in with self; { mme = derive2 { name="mme"; version="0.1-6"; sha256="1k60y1yrf7fv939v32kf3il7r3cws0kih4bpm0ap28fvbx3vr3yb"; depends=[MASS Matrix]; }; mmeln = derive2 { name="mmeln"; version="1.5"; sha256="06knagiyhm24rk4m2p7yz61sscxplwpwbwf1356jazxp7y0v61xp"; depends=[]; }; mmeta = derive2 { name="mmeta"; version="3.0.0"; sha256="088mynadrcwrw7g31f6p0g3ykq2q44mwsbpp056v8s19hq5pxjn1"; depends=[aod ggplot2]; }; - mmirestriktor = derive2 { name="mmirestriktor"; version="0.1.0"; sha256="0l5ncw2g5b9yzw8zdk1x07f38xxxvf5ngqz427zhnrkcc20zhy2z"; depends=[MASS mmcards restriktor shiny shinythemes]; }; + mmibain = derive2 { name="mmibain"; version="0.1.1"; sha256="0m7ivz6ms06s9zh2696jz04cb1p8xhpippygvil9f16259a8yvrw"; depends=[bain broom car e1071 igraph lavaan mmcards psych shiny shinythemes]; }; + mmirestriktor = derive2 { name="mmirestriktor"; version="0.2.1"; sha256="1qgj3rrri87dj3h3v6r7f5kjyy8b85qn0s7i62qll0lf8fnj334d"; depends=[DT MASS mmcards restriktor shiny shinythemes]; }; mmmgee = derive2 { name="mmmgee"; version="1.20"; sha256="0y3pwnc9h7y2l9cvgfl62nl1vnnkla2y8082jhdvxsb3mk88rgad"; depends=[Matrix mvtnorm]; }; mmod = derive2 { name="mmod"; version="1.3.3"; sha256="1dz6887mlqbagjj98wcabmxj9hvsz8pgsizy1fqkwjhhs44c62y4"; depends=[adegenet pegas]; }; mmodely = derive2 { name="mmodely"; version="0.2.5"; sha256="0fw2ncva8y5jxybi51bbqygkag5zaswni8bfg4gf78yjvjw3iyj5"; depends=[ape caper caroline]; }; @@ -13339,7 +13561,7 @@ in with self; { mmpf = derive2 { name="mmpf"; version="0.0.5"; sha256="1w1ll1l7yzwb1wmlrcfpgqyzni7yb20kxy422y867hx2ndxlfwpz"; depends=[checkmate data_table]; }; mmpp = derive2 { name="mmpp"; version="0.6"; sha256="16aypjf4i0ya3qgxqrrg8y0xbnq1pnqky1dpkgln5q494hphyg91"; depends=[]; }; mmr = derive2 { name="mmr"; version="0.1.0"; sha256="0by2v47b4kpjhfxzzl6kc1shw7g46nwnww4rq333r2cywvrbkk4w"; depends=[]; }; - mmrm = derive2 { name="mmrm"; version="0.2.2"; sha256="1kfrzgl942fcfc0yhjjca2pqc28w37fy1313brfwcg1b9qi60grl"; depends=[checkmate lifecycle nlme numDeriv Rcpp RcppEigen Rdpack stringr testthat TMB]; }; + mmrm = derive2 { name="mmrm"; version="0.3.7"; sha256="18ka7g55q59cwr0hmdwy9wfi9vclzghqk4r3l0vdxnpb1p78rlr0"; depends=[checkmate generics lifecycle Matrix nlme Rcpp RcppEigen Rdpack stringr testthat tibble TMB]; }; mmsample = derive2 { name="mmsample"; version="0.1"; sha256="0mdd2zryadd31a5pls5fvlxx52mr54jsi1i6mwrs4y7rl3i9v95z"; depends=[MASS Rcpp RcppArmadillo]; }; mmstat4 = derive2 { name="mmstat4"; version="0.1.6"; sha256="0glbf5s0d0l52by6iygnmr9yz6gw1mycgypfkfciixys4zii9ylj"; depends=[digest httr rappdirs rio rstudioapi shiny]; }; mmtsne = derive2 { name="mmtsne"; version="0.1.0"; sha256="1by0hrggla6idc1isnq072i1wfpw4x7id3hkg8l65gy8iycccd12"; depends=[]; }; @@ -13350,7 +13572,7 @@ in with self; { mnlfa = derive2 { name="mnlfa"; version="0.2-4"; sha256="0m3phcskg8pwxg1p8ph2g43rbd6p3v8rysys60q5kv4457hgwqpx"; depends=[CDM Rcpp RcppArmadillo]; }; mnmer = derive2 { name="mnmer"; version="0.99.1"; sha256="0smy7n016nax4wng8pikmgwmbkrhykc2hzvh60hwfbqlbfda66yj"; depends=[Biostrings cpp11]; }; mnonr = derive2 { name="mnonr"; version="1.0.0"; sha256="143qkn3bx37a6r7kgmspqh55l2r8k9f93jgxr6qpg51w411k5ilb"; depends=[]; }; - mnorm = derive2 { name="mnorm"; version="1.2.1"; sha256="1g7174hbknriwmj044zb4psc4f2np3qy308xsq2ik3n9fvxz0vyh"; depends=[hpa Rcpp RcppArmadillo]; }; + mnorm = derive2 { name="mnorm"; version="1.2.2"; sha256="1ivd40cmcp66h4yccbll90fgqmq03pgy3hgklz8wxj0j479r21z0"; depends=[hpa Rcpp RcppArmadillo]; }; mnormt = derive2 { name="mnormt"; version="2.1.1"; sha256="020ka48jsxm9l109ksvy2l17xcpm51avm0l971dgs2mgg01sgz4m"; depends=[]; }; mnt = derive2 { name="mnt"; version="1.3"; sha256="1wf2mq4zdhznv589j7snw0gpnfrlvq6lhfihi2n20qlwm3lb9naa"; depends=[MASS pracma]; }; mob = derive2 { name="mob"; version="0.4.2"; sha256="1mv0bsik3bdkmnggy2fv0482fqv2yck1ycw49wd45p2dyfzzwcsd"; depends=[gbm Rborist]; }; @@ -13364,7 +13586,7 @@ in with self; { mod09nrt = derive2 { name="mod09nrt"; version="0.14"; sha256="1wn1y33bj9r712l0f063j5gcl423anjzmvgfy0ddihcrbpz4l7a0"; depends=[]; }; mod2rm = derive2 { name="mod2rm"; version="0.2.1"; sha256="1adx8ndz299hzlljahvbv1px60dfchwh2ic6njr12k3zcm52rsby"; depends=[ggplot2 scales]; }; modACDC = derive2 { name="modACDC"; version="1.0.0"; sha256="0l7gs96wkm09yflqnzas2axdc7ca29x6g7azxsaxfi3max2ns797"; depends=[CCA CCP data_table doParallel foreach ggplot2 partition tidyr]; }; - modEvA = derive2 { name="modEvA"; version="3.9.3"; sha256="0ycq9gqj9v6j4v1b0ivhdmzpkyhjxy2bszdgk2ad9rp2030m5rnd"; depends=[terra]; }; + modEvA = derive2 { name="modEvA"; version="3.11"; sha256="0dl8a7lg03ipcjz570id8kb5fp12csy6a4f5qcfwvpb3cjpwc1gc"; depends=[terra]; }; modMax = derive2 { name="modMax"; version="1.1"; sha256="1mx4623az7vzaqf530pklx7j92qwwq93pa2416lnr24jjcxgva2h"; depends=[gtools igraph]; }; modQR = derive2 { name="modQR"; version="0.1.3"; sha256="15ks5i7s19r4s9faxn36qlcf4y150b6xji970kxgilcgxvfqkgd8"; depends=[geometry lpSolve]; }; modTurPoint = derive2 { name="modTurPoint"; version="0.1.0"; sha256="1m24vsi80ln1r7sr40pipaaanyc60yfxmjzf8l7nfy3yvyr8zqpn"; depends=[]; }; @@ -13381,7 +13603,7 @@ in with self; { modelc = derive2 { name="modelc"; version="1.0.0.0"; sha256="0xz1zgv5yyvq0yfnhm1kvb4wvlyn4ccd0lkwji55vq8hndvjvk98"; depends=[]; }; modeldata = derive2 { name="modeldata"; version="1.2.0"; sha256="15d29497bbarb3qyib4g584hscfviv0cg62195s26qg1q6l022ac"; depends=[dplyr MASS purrr rlang tibble]; }; modeldatatoo = derive2 { name="modeldatatoo"; version="0.2.1"; sha256="0qric17sxfy4w4pgp8cvmm30vq9lddk58hzqrm5f7s63ydjb4n2i"; depends=[pins]; }; - modeldb = derive2 { name="modeldb"; version="0.2.3"; sha256="1drmcs46l77ihi4j4qr7j09bnf9n1488zy5954gqahq7ab80ag3g"; depends=[dplyr ggplot2 progress purrr rlang tibble tidypredict]; }; + modeldb = derive2 { name="modeldb"; version="0.3.0"; sha256="109ggy93ikcc5mv8jx8z8kx41pzzbz96mgqzwf8z7175ir6bql6z"; depends=[cli dplyr ggplot2 progress purrr rlang tibble tidypredict]; }; modelenv = derive2 { name="modelenv"; version="0.1.1"; sha256="1pnc3bs2fzanqzjv2y8a7yy6s8hmwwsccjc8pvifff5kp557a6di"; depends=[glue rlang tibble vctrs]; }; modelfree = derive2 { name="modelfree"; version="1.2"; sha256="08kqc5a5ray0wgnd8c6d1frqzg9q990j1p78j7j7c5xll402c8ns"; depends=[PolynomF SparseM]; }; modelimpact = derive2 { name="modelimpact"; version="1.0.0"; sha256="16sy7r6bw5nzx77rd27ihgvp7bs39xchgid94ssklj6syc3kn2vq"; depends=[dplyr magrittr]; }; @@ -13394,8 +13616,8 @@ in with self; { modeltools = derive2 { name="modeltools"; version="0.2-23"; sha256="1vqh69256h344sbj5affm0kmc77dakrxp6442xfdnfd0y5d8sgkb"; depends=[]; }; modelwordcloud = derive2 { name="modelwordcloud"; version="0.1"; sha256="0ardib0h923i7jk8bgcq6pn2zazx9acf9sdggifsk46hdz8hvqnm"; depends=[]; }; moder = derive2 { name="moder"; version="0.2.1"; sha256="19lz6jl9lhzwafmxx8yp7sx5lkz2xixk2yl5ys5l82am402d1wwb"; depends=[]; }; - moderate_mediation = derive2 { name="moderate.mediation"; version="0.0.6"; sha256="1nlv2v31h7h6isyv7nv5b7mb2v8c645rhrwabjykjamhh1d9llgj"; depends=[cowplot distr doSNOW earth foreach ggplot2 mvtnorm reshape2 scales]; }; - modernVA = derive2 { name="modernVA"; version="0.1.2"; sha256="0kbk1jm39s6q2dyk5s3kn9mcjssqpkm5czr7vc2va92sg19174r9"; depends=[]; }; + moderate_mediation = derive2 { name="moderate.mediation"; version="0.0.7"; sha256="0nlsz84wd3apzsif99zq51k76vdbwflaysdllqrqbxp6vb2rs4hz"; depends=[cowplot distr doSNOW earth foreach ggplot2 mvtnorm reshape2 scales]; }; + modernVA = derive2 { name="modernVA"; version="0.1.3"; sha256="0hk98m83gpy12yffj4hl3qjl6fc75hsmw8j2577w4j073aml8x6p"; depends=[]; }; moderndive = derive2 { name="moderndive"; version="0.5.5"; sha256="0bgq6wsyyi6nsxqqh2k3zsmk64pfvb57z8pzk8ych3xih491hzlm"; depends=[broom dplyr formula_tools ggplot2 glue infer janitor knitr magrittr rlang stringr tibble]; }; modest = derive2 { name="modest"; version="0.3-1"; sha256="07rs014hdcabp2n0gg14pz2gmqgbw38vjv7a80vkzzh3601hxqws"; depends=[knitr rhandsontable shiny shinyBS]; }; modesto = derive2 { name="modesto"; version="0.1.4"; sha256="12p5azbbng1hnvs5b86g85871dn5534iv7r6fw5v1iv1h1rcypcr"; depends=[markovchain Rcpp]; }; @@ -13422,27 +13644,27 @@ in with self; { monaco = derive2 { name="monaco"; version="0.2.2"; sha256="109m9rvy39bp7j3jj8y6qdr4dran0qqvcx267mvil9c8ipxr89ms"; depends=[htmltools htmlwidgets rstudioapi shiny]; }; monashtipr = derive2 { name="monashtipr"; version="0.1.0"; sha256="050xa9ghhf5xy76vndry7rhqn3hn0lhz6wjwz9vxk6mcfy5j2wq5"; depends=[glue httr lifecycle magrittr purrr rlang rvest xml2]; }; mondate = derive2 { name="mondate"; version="0.10.02"; sha256="18nsqldj1vvv882nh2dyilqvz1jbhqkz3q69cpjq1xfcj0z88qxz"; depends=[]; }; - mongolite = derive2 { name="mongolite"; version="2.7.2"; sha256="1x05w1ln1syi0b61q9gjpjdavn3g7bidhcrb82z9icwwxmxwrhaz"; depends=[jsonlite mime openssl]; }; + mongolite = derive2 { name="mongolite"; version="2.7.3"; sha256="0ddzxqcp756yl9jn690bnzn54cb51i2vg3ciyc88sn1yms1vkfnm"; depends=[jsonlite mime openssl]; }; mongopipe = derive2 { name="mongopipe"; version="0.1.1"; sha256="081l6d1kwh30wq5kwz9dd2a9221x9139x1xbvfiqixwv0g9sjjy0"; depends=[jsonlite magrittr rlang]; }; + monitOS = derive2 { name="monitOS"; version="0.1.3"; sha256="0i88z6r166h6azgydsin8xn93mv92gbl8fx6fcnhd9n0lshl1jnj"; depends=[glue shiny shinydashboard]; }; monitoR = derive2 { name="monitoR"; version="1.0.7"; sha256="1h1g0m1j13mz37xxwck4s7a0bfqvi0nrzfw60j7bkzaah8zxcc9n"; depends=[tuneR]; }; monmlp = derive2 { name="monmlp"; version="1.1.5"; sha256="19cx60csm8mnf6ksg64vlhi8wi1c7bmv9l55y9zmaljblr0kmzxf"; depends=[optimx]; }; monoClust = derive2 { name="monoClust"; version="1.2.1"; sha256="18zb4wfb09rpzzr9bc0nr71994nhgsk74s512dxlss50isvfqjqd"; depends=[cluster doParallel dplyr foreach ggplot2 permute purrr rlang stringr tibble tidyr]; }; monobin = derive2 { name="monobin"; version="0.2.4"; sha256="1060c7g2dz4cnvlfp2dnrl5fblvifmcskrgykqbfswpyfna1lw4a"; depends=[dplyr Hmisc]; }; monobinShiny = derive2 { name="monobinShiny"; version="0.1.0"; sha256="1ix376j39fby5571irf8i5bmz8i7nnvfzbvs5cv0k42dcgq93m0g"; depends=[dplyr DT monobin shiny shinydashboard shinyjs]; }; monochromeR = derive2 { name="monochromeR"; version="0.2.0"; sha256="013mmssczx6ii810vmb0x4k7miwzh4a5yzlr4skb5yzppxdy629s"; depends=[ggplot2 magrittr]; }; - monomvn = derive2 { name="monomvn"; version="1.9-18"; sha256="16wv8ip6s720d5ksd1y0r25gd2210jwhlfvca5vyzizm768bkrha"; depends=[lars MASS mvtnorm pls quadprog]; }; + monomvn = derive2 { name="monomvn"; version="1.9-19"; sha256="1kfdczpja1z196pj3vf522ysd3k678bwsjmlr3045dm4didsyah2"; depends=[lars MASS mvtnorm pls quadprog]; }; monoreg = derive2 { name="monoreg"; version="2.1"; sha256="1ra6mnn9m3989h6pcrpfhv5bl4q5i6856w4wp6lmaxipr6swlnk2"; depends=[]; }; monotone = derive2 { name="monotone"; version="0.1.2"; sha256="0izj9p51f5g291n7zvgh9ncjjm88aacz6imy08kpwb0d9bgxl1mf"; depends=[]; }; monotonicity = derive2 { name="monotonicity"; version="1.3.1"; sha256="0bb6sl8yykry25a86qfggi36ggr1xrxcqsnzp6rb6na228hbwa2z"; depends=[lmtest MASS sandwich]; }; - monreg = derive2 { name="monreg"; version="0.1.4"; sha256="15qgfhbd8ny05rjd1nn33ynh4i7m7wcy8az53jraghlk760bymwg"; depends=[]; }; + monreg = derive2 { name="monreg"; version="0.1.4.1"; sha256="1i0dxv6azb6x2i7yd9w0254b50qgiidccrn5jn6rqvb5y3dj2rn1"; depends=[]; }; moodleR = derive2 { name="moodleR"; version="1.0.1"; sha256="0wbrnbs03i6xzyhq82d75yjryfqfl11k55sj9h0j9f7z46dq7glp"; depends=[anytime cli config DBI dplyr ggplot2 ggwordcloud glue lifecycle rlang RMariaDB RPostgres RSQLite scales stringr tidytext usethis]; }; moodlequizR = derive2 { name="moodlequizR"; version="1.0.3"; sha256="06z90ycisq9basn48gwrgrbsvmj4vcjvjkps328czzcy8xz61g06"; depends=[base64 mvtnorm shiny]; }; moonBook = derive2 { name="moonBook"; version="0.3.1"; sha256="1ml4vvm0mvrprpyi0l50aw38brx18bk2qny4gybmkvlbakalz9bx"; depends=[crayon magrittr nortest sjmisc stringr survival]; }; moose = derive2 { name="moose"; version="0.0.1"; sha256="06zjg3dbb4ascnbi3k2cpzswi2mybdbm55d3d5zj17bpa6j0j4cz"; depends=[]; }; mop = derive2 { name="mop"; version="0.1.1"; sha256="0vi9ff1mmpz1ihkmvddfwxh3x5zrdxbc3m2drnpsifil3sg2d9x8"; depends=[doSNOW foreach Rcpp snow terra]; }; mopac = derive2 { name="mopac"; version="0.1.0"; sha256="07ljy6rwicyrv20l7zyxq2lb7qqfpl5mpv834m2n5c4air7sy23m"; depends=[]; }; - moranajp = derive2 { name="moranajp"; version="0.9.6"; sha256="1w28fzwxgrmf12l40f4wl2h8qflbsii7g3wiqxxxg0v6njp49ws1"; depends=[dplyr ggplot2 ggraph igraph magrittr purrr rlang rvest stringi stringr tibble tidyr]; }; - moreparty = derive2 { name="moreparty"; version="0.3.3"; sha256="1kjj4qaj4yfqqdwqiwaac2cj7l09ksxgk8lhmi3rcv62b47cc57y"; depends=[datamods DT foreach ggplot2 iml MASS measures party partykit pdp phosphoricons plyr rclipboard rlang shiny shinyWidgets varImp vip]; }; + moreparty = derive2 { name="moreparty"; version="0.4"; sha256="0zny9bffj8dfl6i76ylrcgrbfbawk6aksdfkn4vf57zg7qfv0yqh"; depends=[datamods DT foreach ggplot2 iml MASS measures party partykit pdp phosphoricons plyr rclipboard rlang shiny shinyWidgets varImp vip]; }; morestopwords = derive2 { name="morestopwords"; version="0.2.0"; sha256="0j7icm2kim2dr9wpddg2gkc4b0pp0amg5why9rxyg74c3wj6np5g"; depends=[]; }; morph = derive2 { name="morph"; version="1.1.0"; sha256="0qx3wdcrilcp1hlsgaxbb4afcnkyx0nxwampm59ssc3zps2wh2cq"; depends=[igraph reshape2 rgl stringr]; }; morphemepiece = derive2 { name="morphemepiece"; version="1.2.3"; sha256="1xilq8sz0q35xs4wzig5x29h5lqfin2x6pvkygn5pacl6wcdp80n"; depends=[dlr fastmatch magrittr memoise morphemepiece_data piecemaker purrr readr rlang stringr]; }; @@ -13452,10 +13674,10 @@ in with self; { morse = derive2 { name="morse"; version="3.3.2"; sha256="0534k96fhfdkfr3dh6q85fmsqqld7xv1zxvikwcb6z6by3nr9cpp"; depends=[coda deSolve dplyr epitools ggplot2 gridExtra magrittr reshape2 rjags tibble tidyr zoo]; }; mort = derive2 { name="mort"; version="0.0.1"; sha256="09z5j2kknm8jk9153hxkyw5wk08bl2733jjdgy3g0iwna6fl5wrr"; depends=[lubridate rlang]; }; mortAAR = derive2 { name="mortAAR"; version="1.1.5"; sha256="13zx5ldlnc4zhvw7r9ria419dwlf0wbaa8107zvwpcynfb1z4fg7"; depends=[magrittr Rdpack reshape2 rlang tibble]; }; - mosaic = derive2 { name="mosaic"; version="1.8.4.2"; sha256="12kpkb7vm54na9hjjkvzw6gm5plx0m6i0l9kihz2r30zanfx5jca"; depends=[dplyr ggformula ggplot2 lattice MASS Matrix mosaicCore mosaicData purrr rlang tidyr]; }; + mosaic = derive2 { name="mosaic"; version="1.9.0"; sha256="1dydqawljv5l9lmhdrhmr7wh3q1c2mnc61gc99jr0jbb1bmls327"; depends=[dplyr ggformula ggplot2 lattice MASS Matrix mosaicCore mosaicData purrr rlang tibble tidyr]; }; mosaicCalc = derive2 { name="mosaicCalc"; version="0.6.0"; sha256="15i1gw0pyywm28k5cf8q2lwp4g0brxyc3xrwn3fz2w7gxhmmmjyy"; depends=[cubature Deriv dplyr ggformula ggplot2 glue MASS Matrix metR mosaic mosaicCore orthopolynom plotly rlang Ryacas sp tibble]; }; - mosaicCore = derive2 { name="mosaicCore"; version="0.9.2.1"; sha256="1yns15yxr6215xf9qsxfvl24a9zvh1chw49n31dql7fy1zr1dkmp"; depends=[dplyr MASS rlang tidyr]; }; - mosaicData = derive2 { name="mosaicData"; version="0.20.3"; sha256="1s97yq24z7yhzmx0dpspfadpd8hndyhn7aiw0nslwrhvilhwa409"; depends=[]; }; + mosaicCore = derive2 { name="mosaicCore"; version="0.9.4.0"; sha256="0v3xhv6yfk1hc6a40jjgp6vvq102qa1l4n787pfywx6jhzbhamp2"; depends=[dplyr MASS rlang tidyr]; }; + mosaicData = derive2 { name="mosaicData"; version="0.20.4"; sha256="0y6ii234paknak0p8cm5wcjia4s4wh7iixjbbvdgp0w17c05dckh"; depends=[]; }; mosaicModel = derive2 { name="mosaicModel"; version="0.3.0"; sha256="1gx4rzh0h922gyb50vz6q5vqqp5ry5hf2mq95948q2gcady91k5w"; depends=[caret dplyr ggformula ggplot2 knitr lazyeval MASS mosaicCore testthat tibble tidyr tidyverse]; }; mosqcontrol = derive2 { name="mosqcontrol"; version="0.1.0"; sha256="199rkfisagr4kfx358f8yrbls00fng0kq8siyrbfwwf8qrba9fla"; depends=[assertthat magrittr NlcOptim nloptr pracma sfsmisc]; }; mosum = derive2 { name="mosum"; version="1.2.7"; sha256="1zixjf3s381d44s63qzz4hpx4cd2d3rgzvzgg75gpzfkvxnf5f8c"; depends=[plot3D RColorBrewer Rcpp]; }; @@ -13470,7 +13692,7 @@ in with self; { mousetrap = derive2 { name="mousetrap"; version="3.2.2"; sha256="13qggxq650blx21bbdy3ljmsbmv32039zhims8nh3lk3pzxckf5p"; depends=[cstab diptest dplyr fastcluster fields ggplot2 lifecycle magrittr pracma psych RColorBrewer Rcpp rlang scales tidyr]; }; movMF = derive2 { name="movMF"; version="0.2-7"; sha256="1n2s03h9ksn0sv7k8w93ddy5q1m35nw4jywa98yk0yiq3s4dvsnx"; depends=[clue skmeans slam]; }; move = derive2 { name="move"; version="4.2.4"; sha256="1i6qyx4i8vb2g7i8c2hwjia81m2wd3pyvp6hf6f64j4lcrnafqz7"; depends=[geosphere httr memoise raster Rcpp sp terra xml2]; }; - move2 = derive2 { name="move2"; version="0.2.2"; sha256="1girhkf2d4rjcsd6rp14vcfv9c2kxwnrbjcmzhjj965yzai9gffb"; depends=[assertthat bit64 cli dplyr rlang sf tibble tidyselect units vctrs vroom]; }; + move2 = derive2 { name="move2"; version="0.2.7"; sha256="1r6xz7848g3fykm4l4iqf08ylyi9sg25y37h3iwcaj4zsdpj28l4"; depends=[assertthat bit64 cli dplyr rlang sf tibble tidyselect units vctrs vroom]; }; moveHMM = derive2 { name="moveHMM"; version="1.9"; sha256="0dq6p13rfv0dryl323zqc0ix12vzn0qaykb9qnxiipwvj0j3qmz2"; depends=[boot CircStats geosphere ggmap ggplot2 MASS numDeriv Rcpp RcppArmadillo sp]; }; moveWindSpeed = derive2 { name="moveWindSpeed"; version="0.2.4"; sha256="0gj8qivwgxh9xzyfldb5hqmd8qi2q9xcazdl9iz39fxvwdshravz"; depends=[move Rcpp]; }; movecost = derive2 { name="movecost"; version="2.0"; sha256="0ii2n6xy646h45wf8cv83qbryjipz4mx2gkx57zx8b944as9hkd8"; depends=[chron elevatr gdistance Matrix raster sf sp terra]; }; @@ -13478,7 +13700,7 @@ in with self; { mp = derive2 { name="mp"; version="0.4.1"; sha256="0awvwqwb25q47j14b450k1k5mh2yzwhn7gizjv5j7lyiamk30iwq"; depends=[Rcpp RcppArmadillo]; }; mpath = derive2 { name="mpath"; version="0.4-2.23"; sha256="16gd2z40551cn4fg0ljd09q64a4darsh72f8nw6dwvc2sxfj220n"; depends=[bst doParallel foreach glmnet MASS numDeriv pamr pscl WeightSVM]; }; mpathsenser = derive2 { name="mpathsenser"; version="1.1.3"; sha256="0hjq8ka85yxlzjlln7ravwcrrw85gw0a671v3rjzww9nx1h5gp8h"; depends=[DBI dbplyr dplyr furrr jsonlite lifecycle lubridate magrittr purrr rlang RSQLite tibble tidyr]; }; - mpindex = derive2 { name="mpindex"; version="0.2.0"; sha256="1xcv6rdj9r1yj1jh0672fq9w1q1bq580h0zkam31m871b44dvnsh"; depends=[]; }; + mpindex = derive2 { name="mpindex"; version="0.2.1"; sha256="1csza6krcjclp98b9wj424vkmq5jfg2pglqrsp72pwagpas4dsg7"; depends=[dplyr jsonlite openxlsx purrr stringr tibble tidyr]; }; mplot = derive2 { name="mplot"; version="1.0.6"; sha256="15cmwk4lphxy5p3azy9lwhij76127h9g4g1j1sv59mbqvrqid0sk"; depends=[bestglm doParallel doRNG dplyr foreach ggplot2 glmnet googleVis leaps magrittr plyr reshape2 scales shiny shinydashboard tidyr]; }; mplusParallel_automation = derive2 { name="mplusParallel.automation"; version="0.0.1.1"; sha256="012zbd09vqln1xb8lj6akiv1nyhiayiwiwbk8q70yv1mfpj5jgpm"; depends=[dplyr furrr future MplusAutomation]; }; mpm = derive2 { name="mpm"; version="1.0-23"; sha256="1jpv2ddmw7aarqbbyfys1yb840arw33319wnny3v2hk84hldmayj"; depends=[KernSmooth MASS]; }; @@ -13491,7 +13713,7 @@ in with self; { mpr = derive2 { name="mpr"; version="1.0.6"; sha256="155cjdcyvxnmqxx3zg2dvzk7av2jcn67lj2vdpd2ahbznax76ghk"; depends=[survival]; }; mpspline2 = derive2 { name="mpspline2"; version="0.1.6"; sha256="1zh53lxsy895lljxlyhas5xb9ln5q772h26yil7ydq6zlh4w8vr0"; depends=[]; }; mpt = derive2 { name="mpt"; version="0.8-0"; sha256="02m92dn9y5q4ql7ydn01nn5irm82kknd2dqc0bcnxsn7kdbglnid"; depends=[]; }; - mpwR = derive2 { name="mpwR"; version="0.1.4"; sha256="0s18dg39ff4llppjkriyz23xni22p59v7lfxpq917zsijghk4iad"; depends=[comprehenr data_table dplyr flowTraceR forcats ggplot2 magrittr plotly purrr stringr tibble tidyr UpSetR]; }; + mpwR = derive2 { name="mpwR"; version="0.1.5"; sha256="16j81a4minl8710fl32k05g4xcpii7r3jqzypkmvxyhrb1mdvc1q"; depends=[comprehenr data_table dplyr flowTraceR forcats ggplot2 magrittr plotly purrr stringr tibble tidyr UpSetR]; }; mr_pivw = derive2 { name="mr.pivw"; version="0.1.1"; sha256="1y3kfbwvy5a01527d18ca4p10nm8x4rm8zgr7h71irbjl3jlj70v"; depends=[]; }; mr_raps = derive2 { name="mr.raps"; version="0.2"; sha256="069vyvsdgc5m7n2fd0h7jrllz789zvsxka7h5wiy36dc7lagd6f8"; depends=[nortest]; }; mrMLM = derive2 { name="mrMLM"; version="5.0.1"; sha256="0z2vwvpc7yrxza3jy3x3mj7d3n10bfbq72rcsnrjrz2jkcbkwb8g"; depends=[BEDMatrix coin data_table doParallel foreach lars ncvreg Rcpp RcppEigen sampling sbl]; }; @@ -13502,16 +13724,16 @@ in with self; { mrbin = derive2 { name="mrbin"; version="1.7.4"; sha256="11k7k88ax9jpad32nbv52hkdrsh1px1aid3j54gbmvhf3kbqasmd"; depends=[]; }; mrbsizeR = derive2 { name="mrbsizeR"; version="1.2.1.1"; sha256="0v06sd5sh7ghlr8lgrv6l4glmv7chj3951pw4ssxrly4hz2rh6i0"; depends=[fields maps Rcpp]; }; mrct = derive2 { name="mrct"; version="0.0.1.0"; sha256="0sgdkkg7x3zly7s35gz7mz79wrwlvnrp8mm7rabqs2lw7lc93lza"; depends=[fda fdapace ggplot2 Rdpack reshape2 robustbase]; }; - mrds = derive2 { name="mrds"; version="2.2.9"; sha256="003hcsg079acyc2jkp1s5q2ckyr1xhpfl8gv3na3vkl7s2yzdprg"; depends=[mgcv numDeriv optimx Rsolnp]; }; - mreg = derive2 { name="mreg"; version="1.2.0"; sha256="1gz19d4l0q3xd1w72ip6mhv20w8fgaaczkkdv40bflwabpxdy420"; depends=[]; }; + mrds = derive2 { name="mrds"; version="2.3.0"; sha256="1arp1nk393wbbvasvsp3mb08lbvl3y38bw06sxyk148za3lnhkhq"; depends=[mgcv numDeriv optimx Rsolnp]; }; + mreg = derive2 { name="mreg"; version="1.2.1"; sha256="1j958jkibjlvjh0nwbwmqk7imcv3srhnzg28gs9j5p8xhyx12i0f"; depends=[]; }; mregions = derive2 { name="mregions"; version="0.1.8"; sha256="16z610j01nf9k1hamsxydk2j6qdqpbyj29b5hm9r3fi8fm3smhd6"; depends=[data_table geojson geojsonio geojsonsf httr jsonlite rappdirs sf sp tibble xml2]; }; mrf = derive2 { name="mrf"; version="0.1.6"; sha256="0jqpx0ng0l8f7y941awpi82yqbv8ir0sixiw6zdkqpj82d9a7j9m"; depends=[DEoptim forecast limSolve monmlp nnfor]; }; mrf2d = derive2 { name="mrf2d"; version="1.0"; sha256="0fmxn178bkw77iz51bnjxala9xmhs44km57m8msvlw0k69sddyif"; depends=[dplyr ggplot2 Rcpp RcppArmadillo Rdpack tidyr]; }; mrfDepth = derive2 { name="mrfDepth"; version="1.0.15"; sha256="08dc5xq3spv1zb5yfqmwldiw7sflq1nfpkn0cqapw4i4csx31qsl"; depends=[abind geometry ggplot2 matrixStats Rcpp RcppArmadillo RcppEigen reshape2]; }; mrfse = derive2 { name="mrfse"; version="0.4.1"; sha256="1kk6j7x4z4vaiwnd2mv2brzd1z7g4kyxxylxf31971i6klnsn4zb"; depends=[gtools Rcpp Rfast]; }; mrgsim_parallel = derive2 { name="mrgsim.parallel"; version="0.2.1"; sha256="074c47fkwy5n9x89dswi3ybnck1f0rlbyad6by32jyslw8bz76ln"; depends=[callr dplyr fst future future_apply mrgsolve]; }; - mrgsim_sa = derive2 { name="mrgsim.sa"; version="0.1.0"; sha256="199m6ygwnw6fbld5fqsw1j5jz9x6l1ayrpsc0r51q4fr7nmmpfj2"; depends=[assertthat dplyr ggplot2 mrgsolve patchwork purrr rlang tibble tidyr tidyselect withr]; }; - mrgsolve = derive2 { name="mrgsolve"; version="1.1.1"; sha256="1dhvrhvprra2q583ibiz3akicb5dz2f7l2aarr9z9m82261pfcz3"; depends=[BH dplyr glue lifecycle magrittr Rcpp RcppArmadillo rlang tibble tidyselect]; }; + mrgsim_sa = derive2 { name="mrgsim.sa"; version="0.2.0"; sha256="1ag6zxfyrcm1lipab6kpjbphvbamgyv3wgz8yf0qdj5dy0ra06hy"; depends=[assertthat dplyr ggplot2 glue mrgsolve patchwork purrr rlang tibble tidyr tidyselect withr]; }; + mrgsolve = derive2 { name="mrgsolve"; version="1.3.0"; sha256="1rzd6angkkmagwid41gwhh8pi6zxzs5wyrj9lq81mna3nym2m7h2"; depends=[BH dplyr glue lifecycle magrittr Rcpp RcppArmadillo rlang tibble tidyselect]; }; mri = derive2 { name="mri"; version="1.0.1"; sha256="1dssq556kid6c3djp0s6v853cranv2wjs2c9521l5ykg5g33hfmv"; depends=[]; }; mritc = derive2 { name="mritc"; version="0.5-3"; sha256="1bpnm2qzq67dgjxsa4wxn51f4a4cxal5r6abgs3m7p5a9a16jmjp"; depends=[lattice misc3d oro_nifti]; }; mro = derive2 { name="mro"; version="0.1.1"; sha256="00gc2hd8q5hb2xrswclcqqw1gxl83zmpma6bhsggg3kppsw1dpjv"; depends=[MASS matrixcalc]; }; @@ -13534,7 +13756,7 @@ in with self; { msd = derive2 { name="msd"; version="0.3.1"; sha256="0n3zg2mwbmazbkk41jv94v28glj38d7f08d3w3xrlnlr9gsqh4sd"; depends=[]; }; msda = derive2 { name="msda"; version="1.0.3"; sha256="0lq6mqhksd35qpwl6ira72mwdzlpaxiv1wzms441r2fh1j0957dp"; depends=[MASS Matrix]; }; msde = derive2 { name="msde"; version="1.0.5"; sha256="0q2jy5f8r5gfj2w8r0kmbgal3wjk37h62ahhjzbphrd8ghdf7za8"; depends=[Rcpp RcppProgress whisker]; }; - mseapca = derive2 { name="mseapca"; version="2.0.1"; sha256="1izbai3d9199a5dpyg882hnc1d7fz0x9gjd5if79i50hhc3lwqyr"; depends=[loadings XML]; }; + mseapca = derive2 { name="mseapca"; version="2.0.3"; sha256="0kmli8dmkv7dacb52dz84plhr4ncagch2kzh61amhga4chwqhwzq"; depends=[loadings XML]; }; msentropy = derive2 { name="msentropy"; version="0.1.4"; sha256="1wn71xqpzs06rnp27ci0lw86blyb25k9xkpkqwdv6656shf21iqp"; depends=[Rcpp]; }; msgl = derive2 { name="msgl"; version="2.3.9"; sha256="0793d12cd1mcnr97byhfwpnvm329w78f56n7dcs4116hlizp8l9h"; depends=[BH Matrix Rcpp RcppArmadillo RcppProgress sglOptim]; }; msgpackR = derive2 { name="msgpackR"; version="1.1"; sha256="0a6vm4q1zfy8wlvhl9wfy09ig1iag9fvjasz5w9bll7idky4ldx5"; depends=[]; }; @@ -13546,7 +13768,7 @@ in with self; { msir = derive2 { name="msir"; version="1.3.3"; sha256="1wm83m3cqd6llxb9p2jwim0wb81v84pgdmgcznygzaaq6kbn3n84"; depends=[mclust]; }; mskcc_oncotree = derive2 { name="mskcc.oncotree"; version="0.1.1"; sha256="1n79k3rp84r8j6paqshvingykszsw995fm7yxf1wl1jfp4hiyl4n"; depends=[dplyr glue httr2 magrittr memoise purrr readr rlang tibble tidyjson tidyr]; }; msltrend = derive2 { name="msltrend"; version="1.0"; sha256="1rwy77ijf3hzq2zp47cijwvqcq34rdlfxwhrd9l56bvmlmzr1dqx"; depends=[changepoint forecast plyr Rssa tseries zoo]; }; - msm = derive2 { name="msm"; version="1.7"; sha256="1c0dvmrjxx551n207fq4yjr56rdchaf1zzldxx4rx4b6g7jgi2bz"; depends=[expm mvtnorm survival]; }; + msm = derive2 { name="msm"; version="1.7.1"; sha256="0nvqgx74rwx061vgmhvc872bwq8smccm2n8r51s37vbfjqmphd6i"; depends=[expm mvtnorm survival]; }; msma = derive2 { name="msma"; version="3.0"; sha256="03aal2l3qxzg25bwav11fmlyps7fbkvr7wzgbqnixjjbmp0c70nk"; depends=[]; }; msme = derive2 { name="msme"; version="0.5.3"; sha256="0mq57zdas1s87nblnvbif9lisgahfhvmabglvp9imr1mvpwybpbh"; depends=[lattice MASS]; }; msmtools = derive2 { name="msmtools"; version="2.0.1"; sha256="09an9bpr0gnqbglb8kj4x8bb7f5dm2lc3d01wx6dh7j1d99vrrdk"; depends=[data_table ggplot2 msm patchwork scales survival]; }; @@ -13565,7 +13787,7 @@ in with self; { mtdesign = derive2 { name="mtdesign"; version="0.1.0"; sha256="0fnyw6zcls12b6mmr9pxj3b9vs8pv1ik3h671kmxfgv1k6dwn6b9"; depends=[BH dplyr ggplot2 logger magrittr Rcpp rlang tibble tidyr]; }; mthapower = derive2 { name="mthapower"; version="0.1.1"; sha256="0g6dn0qn7z6qc1gbzspy1n7b803427bc9fv5yqk7j8i1is1p8h94"; depends=[]; }; mtlgmm = derive2 { name="mtlgmm"; version="0.1.0"; sha256="0q2nl9sk03w0x8khsgwycp1c66nbgrf88hdp6gys7fmvgmaz3yj9"; depends=[caret doParallel foreach mclust]; }; - mtscr = derive2 { name="mtscr"; version="1.0.0"; sha256="17iy815kbz3d9mgscalijc4y0nlywqg5wdq62i3amci1jyirddkm"; depends=[broom_mixed cli dplyr glmmTMB glue lifecycle purrr readr rlang stringr tibble]; }; + mtscr = derive2 { name="mtscr"; version="1.0.1"; sha256="1cx2j10v89n2i4pml0m82xlx77pid5sw3737h09ak0hhr1l0p4x4"; depends=[broom_mixed cli dplyr glmmTMB glue lifecycle purrr readr rlang stringr tibble]; }; mtsdi = derive2 { name="mtsdi"; version="0.3.5"; sha256="0j4hl690n8x7zfpygw5qv0m0jyl8dnz1d3r4314w06h7c578n2kp"; depends=[gam]; }; mtsta = derive2 { name="mtsta"; version="0.0.0.1"; sha256="1k6q2lwvz39lvznqr48x03c7rdcqyxskkikv4wbvm1aiannmmqlj"; depends=[]; }; muRL = derive2 { name="muRL"; version="0.1-13"; sha256="1fx9v5z5n83q4hiwsh359ffrcr0n07hym6cz4rjb4f51h96x893v"; depends=[maps stringr]; }; @@ -13596,17 +13818,17 @@ in with self; { multiRDPG = derive2 { name="multiRDPG"; version="1.0.1"; sha256="0r6n148pakixw4caj0zwib8zirgl98lm0mxqmhvmqjh389icskxc"; depends=[]; }; multiROC = derive2 { name="multiROC"; version="1.1.1"; sha256="15ydbxpkdyvsc55di13jvwh9p6dzxc1yj93w1cwsd8jp2y10wsd3"; depends=[boot magrittr zoo]; }; multiUS = derive2 { name="multiUS"; version="1.2.3"; sha256="0wdvrkl6xvk8xpkm9n0hd5pjks3350ms09jrfqnnxyf3dsbs68dc"; depends=[gplots MASS]; }; - multibias = derive2 { name="multibias"; version="1.2.1"; sha256="0cd9hyz1jgnylklgnwppmy7kla73mmn8qi0gxh67lr0l1pjnpnlk"; depends=[dplyr magrittr rlang]; }; + multibias = derive2 { name="multibias"; version="1.3.0"; sha256="1mlc84cpphg9cwd8a1i7jrms6k89ij5szqp5w0l8yqkg7p3pgi3r"; depends=[dplyr magrittr rlang]; }; multibiasmeta = derive2 { name="multibiasmeta"; version="0.2.2"; sha256="04qnb3l2y86xy8f1j754g8fy6hc1a26rwdznaka789k3dkkckk93"; depends=[dplyr EValue metabias metafor purrr Rdpack rlang robumeta]; }; multibiplotGUI = derive2 { name="multibiplotGUI"; version="1.1"; sha256="08vmdhrn6qqq57q818cqnmsw7qaa4gnw3m5myzp4dc85njgzzi02"; depends=[cluster dendroextras MASS Matrix plotrix rgl shapes tcltk2 tkrplot]; }; - multiblock = derive2 { name="multiblock"; version="0.8.6"; sha256="1xi9xh6ypf194fdq90hcrir4m1gi4cqlz3mmyxd7prgy7ypg0wr2"; depends=[ade4 car lme4 MASS mixlm plotrix pls plsVarSel pracma progress Rcpp RcppEigen RSpectra SSBtools]; }; + multiblock = derive2 { name="multiblock"; version="0.8.7"; sha256="16p168i802w0cr39l5gqsl12kzcgxlr8jpl6sg1xdkngwcy68pfd"; depends=[ade4 car lme4 MASS mixlm plotrix pls plsVarSel pracma progress Rcpp RcppEigen RSpectra SSBtools]; }; multibreakeR = derive2 { name="multibreakeR"; version="0.1.0"; sha256="1rg5k2ldaf5ygnrjpfk28gqqs7d8cfjq9cm5zli47yavqm43mq78"; depends=[dplyr ggplot2 reshape2 rlang scales]; }; multibridge = derive2 { name="multibridge"; version="1.2.0"; sha256="0akl9i3fhgd0pqsvgp7cv2l2l84cqc3cc4lambnjmwdyh7x4qcvd"; depends=[Brobdingnag coda magrittr mvtnorm progress purrr Rcpp Rdpack stringr]; }; multicastR = derive2 { name="multicastR"; version="2.0.0"; sha256="0zxv3kxk8gh2fgllzzg7k625n3p4q5pr465ja0mhvs48m4n262l9"; depends=[]; }; - multichull = derive2 { name="multichull"; version="1.0.0"; sha256="1gc7kxxlbanc6rmmbf6h85jf7kj0a78h23m5vwwqqliv018qsv2n"; depends=[igraph plotly shiny shinythemes]; }; + multichull = derive2 { name="multichull"; version="1.0.1"; sha256="1ghkyypp7pij62iz33di6af27hkvy5rfrh6hpms21v4a43z2ljb7"; depends=[igraph plotly shiny shinythemes]; }; multiclassPairs = derive2 { name="multiclassPairs"; version="0.4.3"; sha256="0mz15dl3fiznbnfjjmnhr9z6qh43mwafnkisd7svc3cb0lrbbjci"; depends=[Boruta caret dunn_test e1071 ranger rdist]; }; multicmp = derive2 { name="multicmp"; version="1.1"; sha256="0mz7ksc5h6dy95l3kbsamm191372blhlrj573krc57bj93lmp1a5"; depends=[numDeriv]; }; - multicool = derive2 { name="multicool"; version="0.1-12"; sha256="0djacq0irfqz4nlnx238kja73yvr1n5qybbfyl6bw1n6qgcjhza8"; depends=[Rcpp]; }; + multicool = derive2 { name="multicool"; version="1.0.0"; sha256="0gcic5w3z5yibq75j7jzjv3lmy04rfmxswmw60vxba4xsnbqxc2g"; depends=[Rcpp]; }; multid = derive2 { name="multid"; version="0.8.0"; sha256="0kwbgnazg89542rjf764mn2bc50fnvcsx00pvighmdsanq5r4w5i"; depends=[dplyr emmeans glmnet lavaan lme4 pROC quantreg]; }; multidplyr = derive2 { name="multidplyr"; version="0.1.3"; sha256="18yl24s1g8wf3xi6f0k7jhs99ka4dslxf5p9ax9m5l1rbva5xdwj"; depends=[callr cli crayon dplyr magrittr qs R6 rlang tibble tidyselect vctrs]; }; multifamm = derive2 { name="multifamm"; version="0.1.1"; sha256="09s6hnyi5x48yp97499zai7b959ylkk17zbbc6d8a71ynvfas8ir"; depends=[data_table funData MFPCA mgcv sparseFLMM zoo]; }; @@ -13616,9 +13838,8 @@ in with self; { multigraph = derive2 { name="multigraph"; version="0.99"; sha256="0hya5r8ak7vk0sda7flhj69cc87b56sxqwz09x2vfg0z05gxi3il"; depends=[multiplex]; }; multigraphr = derive2 { name="multigraphr"; version="0.1.0"; sha256="018kwpphwkpm07by7pvrwp5wvrasnpaxbs67pdrbfxzc139d15q9"; depends=[]; }; multigroup = derive2 { name="multigroup"; version="0.4.5"; sha256="1d3m2c3md9iiv1gfqfyik1xj3fsas85bmf2vbkaks8ljxa42f55k"; depends=[MASS]; }; - multilateral = derive2 { name="multilateral"; version="1.0.0"; sha256="13zp2357vqaj09m6af8gzjgf74983icikbnn11z18r8c3wb5kngy"; depends=[assertive data_table fastmatch MatrixModels yaml]; }; multilaterals = derive2 { name="multilaterals"; version="1.0"; sha256="11zfdhn6qzqz0n31g23bn40wnfzkjndb753iiqvihirphzb74v5v"; depends=[ape igraph]; }; - multilevLCA = derive2 { name="multilevLCA"; version="1.3"; sha256="0isq02h0q5ggmsyv0fdrg2732s1f8vd2i8rhh6sbhqdwsin52bxm"; depends=[dplyr foreach klaR magrittr MASS Rcpp RcppArmadillo tidyr]; }; + multilevLCA = derive2 { name="multilevLCA"; version="1.4"; sha256="1x0flgzx33nf4nr9599y6y7d7gv3w291m4adbajfycms9w13ap1g"; depends=[dplyr foreach klaR magrittr MASS Rcpp RcppArmadillo tidyr]; }; multilevel = derive2 { name="multilevel"; version="2.7"; sha256="0ds7q3q2ncldb4iik24xisyxyyv1yv8l1yz7zd7cy036bna1yp5i"; depends=[MASS nlme]; }; multilevelPSA = derive2 { name="multilevelPSA"; version="1.2.5"; sha256="0926jaicdxk846vyfphb2hyg3zan3wal44x1bwamws0zf4flc4hj"; depends=[ggplot2 MASS party plyr PSAgraphics psych reshape xtable]; }; multilevelTools = derive2 { name="multilevelTools"; version="0.1.1"; sha256="01fzx7j0mkb4fr7axv34184w6w5nfsdcr51nscci1mi5b2805x1s"; depends=[cowplot data_table extraoperators ggplot2 JWileymisc lavaan lme4 lmerTest nlme zoo]; }; @@ -13637,10 +13858,11 @@ in with self; { multinomialLogitMix = derive2 { name="multinomialLogitMix"; version="1.1"; sha256="11mv9xsixcjqv3cq5ay1id3736gzdk192cw2z9khlv1j9bf1x4xh"; depends=[coda doParallel foreach ggplot2 label_switching MASS matrixStats mvtnorm RColorBrewer Rcpp RcppArmadillo]; }; multinomineq = derive2 { name="multinomineq"; version="0.2.5"; sha256="1lm5b3c8z6dqyipr9rwqsh0far4a9v9dfxdvrjlg0iyf723rr39k"; depends=[coda quadprog Rcpp RcppArmadillo RcppProgress RcppXPtrUtils Rglpk]; }; multiocc = derive2 { name="multiocc"; version="0.2.1"; sha256="1ndwky6rjyb7x0mg2xx5lsxr5yyhg7a9jrwmwryjg6jsw23965qx"; depends=[coda interp MASS tmvtnorm truncnorm]; }; - multipanelfigure = derive2 { name="multipanelfigure"; version="2.1.2"; sha256="0cm5bd7k0fx6d3gybcll6vvh14byanyk6dj4civqij7psa48iagc"; depends=[assertive_base assertive_files assertive_numbers assertive_properties assertive_types ggplot2 gridGraphics gtable magick magrittr stringi]; }; + multipanelfigure = derive2 { name="multipanelfigure"; version="2.1.5"; sha256="1jy23qp49kxn83gnrls6ci247zd430zgbyab1rn7l6ahazzcra72"; depends=[assertive_base assertive_files assertive_numbers ggplot2 gridGraphics gtable magick magrittr stringi]; }; + multipleDL = derive2 { name="multipleDL"; version="1.0.0"; sha256="0b8858w0g45xkhschg742kxicd1cp4xhfacn0q3yh17k2fcif7r3"; depends=[BH Rcpp RcppEigen RcppParallel rstan rstantools SparseM StanHeaders]; }; multipleNCC = derive2 { name="multipleNCC"; version="1.2-3"; sha256="1fzg4cc2zmysq8a3jnqspw3w2v8b7h7s884razqva4yn8rlhl36m"; depends=[mgcv survival]; }; multiplestressR = derive2 { name="multiplestressR"; version="0.1.1"; sha256="167ch16bdlk4syjbgn1149q1np90w6299ph35p9npdh1zcynm95f"; depends=[ggplot2 patchwork viridis]; }; - multiplex = derive2 { name="multiplex"; version="3.1.0"; sha256="0nr6pfb80y1jyr7mbb0jwkpl66xrmahwma2wv45bp4nqrax3gscl"; depends=[]; }; + multiplex = derive2 { name="multiplex"; version="3.1.1"; sha256="0y7bcqdma20ca4a7f20kwrhji7mc1rris31kqfb3ps7zwj9bkp3h"; depends=[]; }; multipol = derive2 { name="multipol"; version="1.0-9"; sha256="0cn6l0f1mn3n2rzsfr6ncc37aqc7ij9a8pkxbxq74j11bib0bhsf"; depends=[abind]; }; multirich = derive2 { name="multirich"; version="2.1.3"; sha256="1vv4jhhq46wp6znfv9c47q9z4smn1c560wnbp77qfhiix098wzfj"; depends=[]; }; multiridge = derive2 { name="multiridge"; version="1.11"; sha256="0nxs00bglkr234nxsxn0djvi8cxavzc2nl2nl3zmnqa9aw2aikza"; depends=[mgcv pROC snowfall survival]; }; @@ -13650,6 +13872,7 @@ in with self; { multisom = derive2 { name="multisom"; version="1.3"; sha256="0msxmrj4iawxg4vf4r7kj26zalxz4di2w4nxgxiakiig4g4ggy9z"; depends=[class kohonen]; }; multispatialCCM = derive2 { name="multispatialCCM"; version="1.3"; sha256="044spqh37yz4b40bx6h2dz8lzjz4jf505mgagxxg1bn1spxk9bi2"; depends=[]; }; multitaper = derive2 { name="multitaper"; version="1.0-17"; sha256="1wqa2whcjxwjqg9z46i48dvrga17fdj63r05kg993r1fpriclc1l"; depends=[]; }; + multitool = derive2 { name="multitool"; version="0.1.3"; sha256="15162y6dbpjgpx3y5fys3bb3c60lxzf4vfn2pw31z5rswi4b3km8"; depends=[clipr correlation DiagrammeR dplyr flextable furrr future ggdist ggplot2 glue lme4 moments parameters performance purrr rlang stringr tibble tidyr]; }; multivar = derive2 { name="multivar"; version="1.1.0"; sha256="1jyz921m16g24gjmscsz2mi78ng3c5hzhbcankdq9x1i7kdcqawi"; depends=[ggplot2 glmnet MASS Matrix Rcpp RcppArmadillo reshape2 vars]; }; multivariance = derive2 { name="multivariance"; version="2.4.1"; sha256="1jbv1rhdy6jgvyhwz25hry3xmnxfsl8pwf0j4rj9r8rg6ik8rv1w"; depends=[igraph microbenchmark Rcpp]; }; multivator = derive2 { name="multivator"; version="1.1-11"; sha256="1r9v15bg0kyhq5xqzkpj6ilz745q6k3j46zh1n68pf17zmi0k0ww"; depends=[emulator mathjaxr mvtnorm]; }; @@ -13668,6 +13891,7 @@ in with self; { musica = derive2 { name="musica"; version="0.1.3"; sha256="0cfzfar706l0xdb0n11m18mayj5rrplvf4qry36vgxsiaxcba90r"; depends=[data_table lubridate magrittr qmap]; }; mustashe = derive2 { name="mustashe"; version="0.1.4"; sha256="1rj5vh8bi88c0q4gq2lvbqcg3k63z8pgwylqli8zyq9xb3argab1"; depends=[digest formatR here qs tibble]; }; mutSignatures = derive2 { name="mutSignatures"; version="2.1.1"; sha256="0skw92633mwckkkgkncfv09wvnr910nf4wdbqz0a61cl7mxlsr25"; depends=[cluster doParallel foreach ggplot2 pracma proxy]; }; + mutationtypes = derive2 { name="mutationtypes"; version="0.0.1"; sha256="0yyhx9a1vr2kv38m6spxam39gpysi7a2manil0x1zlzw0fp9x8hw"; depends=[assertions cli data_table]; }; mutoss = derive2 { name="mutoss"; version="0.1-13"; sha256="0hgi9wpy3ai23dk6cdba6r118vvmgw210racsg3n1p24rv6ny3xn"; depends=[multcomp multtest mvtnorm plotrix]; }; mutossGUI = derive2 { name="mutossGUI"; version="0.1-11"; sha256="08pcca9gzns83az6jbjzv4xhm1wgmchhzz4f54x1aq0nmvsz3qq1"; depends=[CommonJavaJars JavaGD JGR multcomp mutoss plotrix rJava]; }; mutualinf = derive2 { name="mutualinf"; version="1.1.3"; sha256="0w6hzmvda2gipgrbglcbb11kn94i92v3p07hihlx0bsdgsh3scph"; depends=[data_table runner]; }; @@ -13677,12 +13901,13 @@ in with self; { mvLSWimpute = derive2 { name="mvLSWimpute"; version="0.1.1"; sha256="1caf843cf139f3fiy3nsq6g83xfz70c20zlfwk4pg5jv4rh0jiyg"; depends=[binhf imputeTS mvLSW wavethresh xts zoo]; }; mvMAPIT = derive2 { name="mvMAPIT"; version="2.0.3"; sha256="1ab4snxbw9p80cs7d6fnxl7cv20l1h2b243q2nj50yh6xirx2a0h"; depends=[checkmate CompQuadForm dplyr foreach harmonicmeanp logging mvtnorm Rcpp RcppArmadillo RcppParallel RcppProgress RcppSpdlog testthat tidyr]; }; mvMISE = derive2 { name="mvMISE"; version="1.0"; sha256="0lnc5g3ksl5cvwylh8p8baxyvq3z32a2i337q7lhg00j031ccy5c"; depends=[lme4 MASS]; }; - mvMORPH = derive2 { name="mvMORPH"; version="1.1.7"; sha256="0bjy8pyy47lqbixjs4qrk4mgvznnviahlkmyf3k07x381z6bl8qx"; depends=[ape corpcor glassoFast pbmcapply phytools spam subplex]; }; - mvMonitoring = derive2 { name="mvMonitoring"; version="0.2.2"; sha256="1b9xr5g4jw56d1pm5k6pfh84zzmwwhlwnri9l2b3fw1kkblykv36"; depends=[dplyr lazyeval plyr rlang robustbase xts zoo]; }; + mvMORPH = derive2 { name="mvMORPH"; version="1.1.9"; sha256="0061jzmrhgp029a22c53pyjdlc492rlvxhdxrbcd3x0ni2b1nh6x"; depends=[ape corpcor glassoFast pbmcapply phytools spam subplex]; }; + mvMonitoring = derive2 { name="mvMonitoring"; version="0.2.4"; sha256="1s8djfn89qdyph3gahh5gsf1pdyn4k07p2a1rs9ajzjqv9dznc4p"; depends=[dplyr lazyeval plyr rlang robustbase xts zoo]; }; mvPot = derive2 { name="mvPot"; version="0.1.6"; sha256="18cx02wg6nkgmh2ba2gp37z838xr70w354wbkfgl5jnyirl5g9xz"; depends=[evd gmp MASS numbers]; }; mvProbit = derive2 { name="mvProbit"; version="0.1-10"; sha256="1iy249mc5fi72l0lcvjrn40fn6q1m8hj8njcl0li2z6lzydifkd4"; depends=[abind bayesm maxLik miscTools mvtnorm]; }; mvQuad = derive2 { name="mvQuad"; version="1.0-8"; sha256="053qrqmd946y1qi1zn6kag41gxn9wdlp0zffw5ya5yyllxfzgszx"; depends=[data_table statmod]; }; - mvSLOUCH = derive2 { name="mvSLOUCH"; version="2.7.5"; sha256="0zvdacgcb42djay6g6ffmpy2ci0x8wzzmxnhnj4xzp5im7za5m2x"; depends=[abind ape Matrix matrixcalc mvtnorm ouch PCMBase]; }; + mvSLOUCH = derive2 { name="mvSLOUCH"; version="2.7.6"; sha256="1l11dza28m5l6iam90z2vvmpabp91s3rmnb7b1x78c77ss1r7gig"; depends=[abind ape Matrix matrixcalc mvtnorm ouch PCMBase]; }; + mvSUSY = derive2 { name="mvSUSY"; version="0.1.0"; sha256="1yvgx439m37ifdviaiykhpxrfw7k43dnvpxc56532w7vwxbvpcd7"; depends=[data_table ggplot2 ggsci RcppAlgos]; }; mvShapiroTest = derive2 { name="mvShapiroTest"; version="1.0"; sha256="0zcv5l28gwipkmymk12l4wcj9v047pr8k8q5avljdrs2a37f74v1"; depends=[]; }; mvabund = derive2 { name="mvabund"; version="4.2.1"; sha256="01kss9dx4an1ir5zs46jypvhj8sdc8wcs00i1223ai09av4lcsgd"; depends=[MASS Rcpp RcppGSL statmod tweedie]; }; mvbutils = derive2 { name="mvbutils"; version="2.8.232"; sha256="0awd0jy492ha321c20kmmgl20kqphdmrmswakc0rq6h8z9d55kdg"; depends=[]; }; @@ -13711,8 +13936,9 @@ in with self; { mvpd = derive2 { name="mvpd"; version="0.0.4"; sha256="10k82g2izv72k99j99mjljg2hxb66pzhgfqal2j5z3cj3gmkjabg"; depends=[cubature libstable4u Matrix matrixStats mvtnorm stabledist]; }; mvrsquared = derive2 { name="mvrsquared"; version="0.1.5"; sha256="00i86rdhmia7c8h8n9ck8yn4wr65ra4z245bsqanchj5bsza6p0i"; depends=[Matrix Rcpp RcppArmadillo RcppThread]; }; mvs = derive2 { name="mvs"; version="1.0.2"; sha256="1p0782c940chysr4sk746gl9gjxzx7rx8xyxbkdp3y6z0904ib5w"; depends=[foreach glmnet]; }; + mvst = derive2 { name="mvst"; version="1.1.1"; sha256="0zfy7lgghmx6ziybxp3w1dar49bhnpzxjmdkzdnkcicrc4yjdl7w"; depends=[MCMCpack mnormt mvtnorm]; }; mvtmeta = derive2 { name="mvtmeta"; version="1.1"; sha256="0s0s5922c5rs8cqk100nci3akqnhbvibm2n2gn8049v3qcyfajyb"; depends=[gtools]; }; - mvtnorm = derive2 { name="mvtnorm"; version="1.2-3"; sha256="1iy65fc2y0af6ma9f6lvzd5zh7zm60cqihdhr58ksc75ymfxrnia"; depends=[]; }; + mvtnorm = derive2 { name="mvtnorm"; version="1.2-4"; sha256="1zws7myh61622v46gir6bs0dpyp6siz0hx7lrsvymshn02xqg0l4"; depends=[]; }; mvtsplot = derive2 { name="mvtsplot"; version="1.0-4"; sha256="1391m4r58hbaqbq46isi15jx6vhx7frdspbs1ippbpw7rsanch9w"; depends=[RColorBrewer]; }; mwTensor = derive2 { name="mwTensor"; version="1.1.0"; sha256="113asdl3hm1kk31x29x89bz3zxccrhbh64xl2fcgds1mkw0gr3mn"; depends=[ccTensor igraph iTensor MASS nnTensor rTensor]; }; mwa = derive2 { name="mwa"; version="0.4.4"; sha256="0f994xpylqhhwwr3rv0y5y68989ssy7q4pb3hawq0ww0l3wj9lmd"; depends=[cem MASS rJava]; }; @@ -13723,7 +13949,7 @@ in with self; { mxnorm = derive2 { name="mxnorm"; version="1.0.3"; sha256="01845m5h4rd38n0fll2k2d9hw6j9dbjgs7kmwy30g9lkffvv73s8"; depends=[caret data_table dplyr e1071 fda fossil ggplot2 glue KernSmooth kSamples lme4 magrittr psych reticulate rlang stringr tidyr uwot]; }; mxsem = derive2 { name="mxsem"; version="0.0.8"; sha256="1a1fg5463vrcqgjz2yr5r26s937jdg1i3pq27kp0zwsa9fa3i5na"; depends=[dplyr OpenMx Rcpp]; }; myCRAN = derive2 { name="myCRAN"; version="1.0"; sha256="0lx0l5z3z20xfil6f3c94by334girhca7ixyix88k5jn46a2s373"; depends=[cranlogs]; }; - myClim = derive2 { name="myClim"; version="1.0.1"; sha256="0qr312ixvhp7bspwh3i9sqabcdsgjqajr07r66bpq02xs9qpv1lc"; depends=[dplyr ggforce ggplot2 lubridate plotly purrr runner stringr tibble tidyr viridis zoo]; }; + myClim = derive2 { name="myClim"; version="1.0.12"; sha256="1ygv7y2rh2jnksn7shjvz86dsjfw5bqyrsl6qnmhscrad4ld5ajr"; depends=[data_table dplyr ggforce ggplot2 lubridate plotly purrr stringr tibble tidyr viridis vroom zoo]; }; myTAI = derive2 { name="myTAI"; version="0.9.3"; sha256="0fd6srvwzqir8zif56cnyi02c952fgc67xzc17wn7xvmvljfvh4x"; depends=[cpp11 doParallel dplyr edgeR fitdistrplus foreach ggplot2 gridExtra nortest RColorBrewer Rcpp RcppArmadillo readr reshape2 scales taxize tibble]; }; mycobacrvR = derive2 { name="mycobacrvR"; version="1.1"; sha256="1hrn2v6wvw8xllqd1bhxb50hj9icinfrar6k9jgl0wjcsn024fc1"; depends=[]; }; mycor = derive2 { name="mycor"; version="0.1.1"; sha256="00hqmvga22bv43833s974s7ky7lbry3r2bb5kza7kvkn1p6773rg"; depends=[lattice]; }; @@ -13737,7 +13963,6 @@ in with self; { na_tools = derive2 { name="na.tools"; version="0.3.1"; sha256="1lbzsckfg297n85kzbin65x1l6qgg9l50hd3xi2gflxc7n2xb8bw"; depends=[]; }; naaccr = derive2 { name="naaccr"; version="2.0.2"; sha256="1j30fb7qvxzpx0y7hq8sbqvszwjfnc4r2g0j8885fmn2wxvcgzdx"; depends=[data_table stringi XML]; }; nabor = derive2 { name="nabor"; version="0.5.0"; sha256="1nj39cdfwrmhgsi3cq8imxv3n6xzc1v6dzdb2cf2hybjk368v4s7"; depends=[BH Rcpp RcppEigen]; }; - nadiv = derive2 { name="nadiv"; version="2.17.2"; sha256="0v2jw0md4bjn15g6slx2bx7ipr3r0s1zv3frjach3rd7b1bs9z7k"; depends=[Matrix]; }; naflex = derive2 { name="naflex"; version="0.1.0"; sha256="18fqfhm6p38z4h8dznac5v8yz53n86cw2x6ma29kvcbvdp4r3yd2"; depends=[]; }; naijR = derive2 { name="naijR"; version="0.6.0"; sha256="1108fz4rhckmb2d9s63rjb44dpfazhvhsqprgx82akbssr7xf9br"; depends=[cli lifecycle mapdata maps RColorBrewer rlang sf stringi]; }; naive = derive2 { name="naive"; version="1.2.3"; sha256="0ha54lc6g6yvh5g3kw5hdp2l7y2xi85b3ills3w1x092gma1q2cy"; depends=[entropy fANCOVA fastDummies ggplot2 greybox imputeTS lubridate modeest moments philentropy purrr readr Rfast scales tictoc]; }; @@ -13751,17 +13976,17 @@ in with self; { nametagger = derive2 { name="nametagger"; version="0.1.3"; sha256="1m6g8fx9fvd8zzvv4c9dh1dw63dkvl9i5mz8rqgvwqgqdvvvw1vi"; depends=[Rcpp]; }; nandb = derive2 { name="nandb"; version="2.1.0"; sha256="1rbn4nibjzvwpccpmqn84w9a167f1avyl18kjlapy5dhafvixgbz"; depends=[assertthat autothresholdr BBmisc checkmate detrendr dplyr filesstrings ggplot2 glue ijtiff magrittr purrr Rcpp reshape2 rlang stringr viridis withr]; }; naniar = derive2 { name="naniar"; version="1.0.0"; sha256="1x4ljc6yji7312g6cg1shc85jqv5kaf2zlf5q7sdmqh3wryskvf2"; depends=[cli dplyr forcats ggplot2 glue magrittr norm purrr rlang tibble tidyr UpSetR vctrs viridis visdat]; }; - nanoarrow = derive2 { name="nanoarrow"; version="0.3.0"; sha256="07cq9qhpg9fdsdaj6as1cyvwaf9x4r9c2zs4p0i2whfcvs1lxkjv"; depends=[]; }; - nanonext = derive2 { name="nanonext"; version="0.10.2"; sha256="1fcgxbin1sx9cahc6575x3b883fslqckgsli0r1dlc3bk7sx2fxk"; depends=[]; }; + nanoarrow = derive2 { name="nanoarrow"; version="0.3.0.1"; sha256="015p7nz3rz1yqdyhg4afy8waimnyj9pgzbyhgrszsdwch7nqn8c6"; depends=[]; }; + nanonext = derive2 { name="nanonext"; version="0.11.0"; sha256="0qwirm48ndmda678hk5vd9vkrkfd0f052qyxf943mzi32bsdvks7"; depends=[]; }; nanostringr = derive2 { name="nanostringr"; version="0.4.1"; sha256="1sivaycgg1j3q9iapy2nq7mp8cak316rgn475sv7pa57ig6g9b7b"; depends=[assertthat ccaPP dplyr purrr rlang tidyr]; }; nanotime = derive2 { name="nanotime"; version="0.3.7"; sha256="05fbdhbax6k1glidmgl0zjc7y7v1ppbpz4422q3jmxmfack7hwd7"; depends=[bit64 Rcpp RcppCCTZ RcppDate zoo]; }; naptanr = derive2 { name="naptanr"; version="1.0.1"; sha256="074pxm1c8k24b3gbn3ibbwpsixbmjq3wx9agxg3ljflny2s6hhqp"; depends=[data_table httr]; }; naptime = derive2 { name="naptime"; version="1.3.0"; sha256="1cadfv5sdsmz61kf96hf2gbnghf24q40g5c3h9b8prvkxslap691"; depends=[lubridate]; }; nardl = derive2 { name="nardl"; version="0.1.6"; sha256="1vf8im4zs4j0v3k617aaskq9n2fg8sn3j5bllcbz2ircrpijr21m"; depends=[car Formula gtools MASS strucchange tseries]; }; narray = derive2 { name="narray"; version="0.5.1"; sha256="0vpx1fl24ba1c5x3bw0n8bx5yp77gsqybaxgbq6mj6by29ggq73l"; depends=[progress Rcpp stringr]; }; - naryn = derive2 { name="naryn"; version="2.6.23"; sha256="0b0dgpamm86llk7vxazgzfdby2y7ks95msq3046b2kp524nihmqb"; depends=[dplyr glue lifecycle magrittr purrr stringr tidyr yaml]; }; + naryn = derive2 { name="naryn"; version="2.6.25"; sha256="0ppjiill81j6x28f35apb6pgncfvjwnn4i183drcqqsjn4ys9ghr"; depends=[dplyr glue lifecycle magrittr purrr stringr tidyr yaml]; }; nasadata = derive2 { name="nasadata"; version="0.9.0"; sha256="0y88qdy8c1y0prsajxic5vdqfixv9knjsbhw3vbfac8wv3a69bjl"; depends=[dplyr jsonlite plyr png]; }; - nasapower = derive2 { name="nasapower"; version="4.0.11"; sha256="0md4y2fpjvx56j2a9v00n86x5gwvka07j4a53h80a6rdfyf21cnb"; depends=[crul jsonlite lubridate readr tibble]; }; + nasapower = derive2 { name="nasapower"; version="4.1.0"; sha256="175ih2z83gp54lxn6459bgqj2bgh87bvqn4sjsy19i5qlr9aphqw"; depends=[cli crul jsonlite lubridate readr rlang tibble]; }; nasaweather = derive2 { name="nasaweather"; version="0.1"; sha256="05pqrsf2vmkzc7l4jvvqbi8wf9f46854y73q2gilag62s85vm9xb"; depends=[]; }; naspaclust = derive2 { name="naspaclust"; version="0.2.1"; sha256="1p4ilv2z5140h4kdix2w1v32vz1n8v33wq0fhc8n8mi7baknhd1i"; depends=[beepr rdist Rdpack stabledist]; }; nat = derive2 { name="nat"; version="1.8.23"; sha256="0wcn2dz44vfn475frir9fgj7hb45jvpkf2sxz7pd2m9a9p9idraf"; depends=[digest filehash igraph nabor nat_utils plyr rgl yaml]; }; @@ -13786,18 +14011,17 @@ in with self; { nberwp = derive2 { name="nberwp"; version="1.2.0"; sha256="0v1y51rmm0h3w0v5y97wprhdhyc14r4iprdpkmdh8q9ajj1ds1c0"; depends=[]; }; nbfar = derive2 { name="nbfar"; version="0.1"; sha256="1gr9q83ff950x2lcyv9apsnjah4kpi8805mci9m0s3gvr7llpjq4"; depends=[glmnet magrittr MASS mpath Rcpp RcppArmadillo RcppParallel rrpack]; }; nblR = derive2 { name="nblR"; version="0.0.4"; sha256="1p1m1jml7grpjfp5qibffm3dx8zz37h216bpcwybm293naprmbfr"; depends=[cli magrittr]; }; - nbody = derive2 { name="nbody"; version="1.33"; sha256="1ky07bi830z3c2fvxq0fmicsllm736b510q4zphff4rwljx1awf2"; depends=[magicaxis Rcpp]; }; nbpMatching = derive2 { name="nbpMatching"; version="1.5.4"; sha256="0f7avg06lr5a1yixrl6mhcs98ywa91qbfkc7qlz2pxzpc1v13ffb"; depends=[Hmisc MASS]; }; nc = derive2 { name="nc"; version="2023.8.24"; sha256="158vn3ivypx6gpbx1mpz1kw7lv9ifk76k1hcz4zv84jss2a1q135"; depends=[data_table]; }; ncappc = derive2 { name="ncappc"; version="0.3.0"; sha256="0bf00iskrd3x43839bwn957mi3qvm2dhcmqa7hl1ib0gp2r1cnzx"; depends=[bookdown Cairo dplyr ggplot2 gridExtra gtable knitr lazyeval magrittr PopED purrr readr reshape2 rlang rmarkdown scales tibble tidyr xtable]; }; - ncar = derive2 { name="ncar"; version="0.4.5"; sha256="1ymxb3av7vd7vljr8h3ga6v01z6nf5j9mc095z0hi31d1khwrd02"; depends=[NonCompart rtf]; }; + ncar = derive2 { name="ncar"; version="0.5.0"; sha256="1cyf06bml2dfdilvyzhal42s56a70fd88wk5zkmrgblckvfyl3cg"; depends=[NonCompart rtf]; }; ncbit = derive2 { name="ncbit"; version="2013.03.29.1"; sha256="01352byijhwhcb7jji7bf5cm6v2yfz925f8wbivrx12x0c65fzw4"; depends=[]; }; - ncdf4 = derive2 { name="ncdf4"; version="1.21"; sha256="03dk47xz6qlpky9kkpkkxc472czq542yml3fdg39bic2yggffnig"; depends=[]; }; + ncdf4 = derive2 { name="ncdf4"; version="1.22"; sha256="040jpcgsb98s6knch0z3f3f5fpmlwks1grpvb9k8s02c9w0a5adr"; depends=[]; }; ncdf4_helpers = derive2 { name="ncdf4.helpers"; version="0.3-6"; sha256="0qnm41rbxb6v7aqh1mdkjhcc2rhs4wg6wmrllldzd99mzz8slv1r"; depends=[abind ncdf4 PCICt]; }; ncdfgeom = derive2 { name="ncdfgeom"; version="1.1.5"; sha256="0v53nns8xq2w6rbn11man8kgr4dqpy2glj2rhn9817lvk9pz8x18"; depends=[dplyr ncmeta RNetCDF sf stars]; }; ncdump = derive2 { name="ncdump"; version="0.0.3"; sha256="09g98mzpky32z41jf23ahzhyv34l34y1gqq99j2hl4pqlvvhxs9i"; depends=[dplyr ncdf4]; }; ncf = derive2 { name="ncf"; version="1.3-2"; sha256="1lqswih19g76aswnf6xygficzf7ri3yayqicifj8cqx8iwvrk91y"; depends=[]; }; - ncmeta = derive2 { name="ncmeta"; version="0.3.5"; sha256="1w47dn04brqac98k5s8a88nh6d6qnkcilq3w4pfczbdff1rv2xlk"; depends=[dplyr rlang RNetCDF tibble tidyr]; }; + ncmeta = derive2 { name="ncmeta"; version="0.3.6"; sha256="0pk5wn0hmf5n1bgx96xighpmr2kkka3fgl6was9z2rsr0k981mc2"; depends=[dplyr rlang RNetCDF tibble tidyr]; }; ncodeR = derive2 { name="ncodeR"; version="0.2.0.1"; sha256="1pxiqxhq2rxs8rxxhw1hbds7z2qkf7ws26a8wsbw815yn6jm10n8"; depends=[cli R6 rhoR]; }; ncpen = derive2 { name="ncpen"; version="1.0.0"; sha256="0vl4cbrsifr5s1691gacmp0lk3aqyq0yfafafzv6g3zygi4igrsa"; depends=[Rcpp RcppArmadillo]; }; ncvreg = derive2 { name="ncvreg"; version="3.14.1"; sha256="1q6klmyf7gbzkinjhv83k8gn95jgn3vkc927wsmffqjqc3d71rd7"; depends=[]; }; @@ -13815,7 +14039,7 @@ in with self; { needmining = derive2 { name="needmining"; version="0.1.1"; sha256="0qsj0ihjchrnl4s44rpsizbcz033z00dmzvic2y1msv0bnfawl6p"; depends=[randomForest rtweet SnowballC SparseM stringr tau tm]; }; needs = derive2 { name="needs"; version="0.0.3"; sha256="16dkjpijz3rz7kd5ggxsdg55iwd42nll1vk6g5ix4xdbqrx6cp9x"; depends=[]; }; negenes = derive2 { name="negenes"; version="1.0-12"; sha256="0b82822vl86gni0pv5f6pjfzmks35i7q2rqkhgyb9z9c677g991q"; depends=[]; }; - negligible = derive2 { name="negligible"; version="0.1.3"; sha256="131bgvac2dk8alnmjymdx6l7cgmz2cncsyg62zgc6asfrh90nrqc"; depends=[DescTools dplyr fungible ggplot2 lavaan MBESS nptest rockchalk tidyr WRS2]; }; + negligible = derive2 { name="negligible"; version="0.1.6"; sha256="0igx64jfxv2dracfg220dkhds6sanjxjsnn9nmax5kr00hzrgfwx"; depends=[DescTools dplyr e1071 fungible ggplot2 lavaan MBESS nptest rockchalk tidyr WRS2]; }; neighbours = derive2 { name="neighbours"; version="0.1-3"; sha256="0q0d8504kjvsgik7pdhsgh9n1xszxa7p4mzpxajki2ym0x7hqx9k"; depends=[]; }; neighbr = derive2 { name="neighbr"; version="1.0.3"; sha256="1rmglfjmx6bfd4w1cpx4rvp7hy2vqvcamy854h5dq0l3kwk4pjcm"; depends=[]; }; neldermead = derive2 { name="neldermead"; version="1.0-12"; sha256="0ws2knrq3b3icv6fzimypzwvzvqf0sayi2ndhacn6lk4snms5pm3"; depends=[optimbase optimsimplex]; }; @@ -13826,15 +14050,15 @@ in with self; { neo4r = derive2 { name="neo4r"; version="0.1.1"; sha256="0s4rjhn2mc8ca4p8p474a83dc277vrf7l968xwxkiac0d4fgbra7"; depends=[attempt data_table glue httr igraph jsonlite magrittr purrr R6 rlang rstudioapi shiny tibble tidyr tidyselect]; }; neojags = derive2 { name="neojags"; version="0.1.4"; sha256="10z5x78a3mjy5jbxlzfzsixp6w8y0v0mkxnwf5bq3rk5dgnga0g0"; depends=[coda rjags runjags]; }; neonOS = derive2 { name="neonOS"; version="1.0.0"; sha256="11jgsf8c7rjfdbn9qljirzwvpnn4wckid4p4syx6py3dqjb4r19f"; depends=[curl data_table httr jsonlite]; }; - neonUtilities = derive2 { name="neonUtilities"; version="2.4.0"; sha256="00f7zqr0jh4g31v1c8zv5n3pwfxqrx9m93rl59fwi276ivgcx60h"; depends=[curl data_table downloader httr jsonlite pbapply R_utils stringr tidyr]; }; - neonstore = derive2 { name="neonstore"; version="0.4.4"; sha256="0fhjm6513kd4y3lry8dwcwk13ns92yk5h3san7ww2ahhdhy4hx9c"; depends=[DBI duckdb httr progress R_utils thor vroom zip]; }; + neonUtilities = derive2 { name="neonUtilities"; version="2.4.1"; sha256="1jrda57yi64lgr8c5z5lchbdin2fs47pb9q4rr6fwh5rzm6hf10x"; depends=[curl data_table downloader httr jsonlite pbapply R_utils stringr tidyr]; }; + neonstore = derive2 { name="neonstore"; version="0.5.0"; sha256="1hj45bfx4m8afnggrhq47wxhvc37pkr87ilizxx2xa1f0vrwp8i0"; depends=[cachem DBI duckdb duckdbfs glue httr memoise progress R_utils thor vroom zip]; }; neotoma2 = derive2 { name="neotoma2"; version="1.0.2"; sha256="120alfpd3k53pc0rwqz0d5z4mgsqzcfvg0z550p3sy3iagz9c02v"; depends=[assertthat dplyr geojsonsf gtools httr jsonlite leaflet lubridate magrittr mapview progress purrr rlang sf stringr tidyr uuid wk]; }; nephro = derive2 { name="nephro"; version="1.4"; sha256="12rrc46dniw09a6402ns868h9c6f0grpsk3wv29z4l92338waiwb"; depends=[]; }; neptune = derive2 { name="neptune"; version="0.2.3"; sha256="04d5rdcvnik9rj58npvs5z1r6ngs9hzc24wzix64czcynkkvkad0"; depends=[ggplot2 htmlwidgets plotly reticulate rstudioapi this_path]; }; nesRdata = derive2 { name="nesRdata"; version="0.3.1"; sha256="1lxvg11g8nizfn8sghirq2749fs9i4w1wiaz3v1djqbkzqcqfrcj"; depends=[dataone dplyr purrr rappdirs readr]; }; nestcolor = derive2 { name="nestcolor"; version="0.1.2"; sha256="1d5fajwh59raw1nxaw6ibh92qrazsgrn7kjph3sv87zq8aqy3snn"; depends=[checkmate ggplot2 lifecycle]; }; nestedLogit = derive2 { name="nestedLogit"; version="0.3.2"; sha256="0lyqqxvh85zpvbcq4qp3cywr70312lw4xgas47hzybcrzqz9r63r"; depends=[broom car dplyr effects stringr tibble]; }; - nestedcv = derive2 { name="nestedcv"; version="0.6.9"; sha256="02lm4naf3gkgj8l1ffqprq49jmxqj0y0i8f0riywcsmkrcllhlkp"; depends=[caret data_table doParallel foreach ggplot2 glmnet matrixStats matrixTests pROC Rfast rlang]; }; + nestedcv = derive2 { name="nestedcv"; version="0.7.3"; sha256="1f725r2f00ldp6pdk3ncvwxm4c2asz6rjs6g8afwh6plxwfkcjq8"; depends=[caret data_table doParallel foreach ggplot2 glmnet magrittr matrixStats matrixTests pROC Rfast rlang]; }; nestedmodels = derive2 { name="nestedmodels"; version="1.1.0"; sha256="09qdfzcm3xv3ilh7awsi5anyra7cwb4xyxs4z30yxc28ll6dh9mf"; depends=[cli dplyr foreach generics ggplot2 lifecycle magrittr parsnip purrr recipes rlang rsample stringr tibble tidyr vctrs]; }; nestedpp = derive2 { name="nestedpp"; version="0.2.0"; sha256="0maw7ik209vdmm1fdnbi7chqy8wb1j1ql8jnry1y3af1g80lpa78"; depends=[ggplot2 reshape2 xtable]; }; nestfs = derive2 { name="nestfs"; version="1.0.3"; sha256="0qaxkg8m64admpw3zpwrd6z5lxdn0i5kl7dlixrp5r7c1j40aw3l"; depends=[dgof pROC]; }; @@ -13853,15 +14077,15 @@ in with self; { netcox = derive2 { name="netcox"; version="1.0.1"; sha256="04biaynmvqrilp0kdxw55b990j7iqnvn8gr07dhzm9f7r9sr7xk6"; depends=[glmnet Rcpp survival]; }; netdiffuseR = derive2 { name="netdiffuseR"; version="1.22.6"; sha256="0f4d0x03970iqxkbr0r9jm8gf28r79rimfnfr1djcajzihxaj7l6"; depends=[boot igraph MASS MatchIt Matrix network networkDynamic Rcpp RcppArmadillo sna SparseM viridisLite]; }; netgen = derive2 { name="netgen"; version="1.3.2"; sha256="1yqi4rb6w9ipxgbl1j1s2s81cg7nzrn65irn5gs82hsq94d6vv2j"; depends=[BBmisc checkmate ggplot2 igraph lhs mvtnorm stringr]; }; - netgsa = derive2 { name="netgsa"; version="4.0.4"; sha256="02127r3vskcksrd893qrs1wqwkbw3b8p33ybgvbwd9j4lxgifmr2"; depends=[AnnotationDbi corpcor data_table dplyr genefilter glassoFast glmnet graph graphite httr igraph jsonlite magrittr Matrix msigdbr org_Hs_eg_db quadprog Rcpp RcppEigen RCy3 reshape2 rlang]; }; + netgsa = derive2 { name="netgsa"; version="4.0.5"; sha256="1m9myxsbvbljr038azxzakpbh20a21qhiy20d0ipvjc5asq3kfla"; depends=[AnnotationDbi corpcor data_table dplyr genefilter glassoFast glmnet graph graphite httr igraph magrittr Matrix msigdbr org_Hs_eg_db quadprog Rcpp RcppEigen RCy3 reshape2 rlang]; }; netgwas = derive2 { name="netgwas"; version="1.14.2"; sha256="0xa3nc7by7v360n6s8fym65fpaz0am4yym3m653nkcr545s0rc5n"; depends=[glasso huge igraph MASS Matrix qtl tmvtnorm]; }; netie = derive2 { name="netie"; version="1.0"; sha256="0ja59rfg576z8rbv073aaab32qazlrqhvyvxpssibwsvbfcrhklm"; depends=[]; }; netmap = derive2 { name="netmap"; version="0.1.2"; sha256="02b3qb0yk6hawd23x44p5d14dvxryf0c7ydlj6d75dgpsddnfj1n"; depends=[ggnetwork igraph network rlang sf sna]; }; netmediate = derive2 { name="netmediate"; version="0.1.2"; sha256="13yrc0sfq5vl6md3jwmzyrzqnkr68f6hksvlj834md1gx29rwj2q"; depends=[btergm ergm ergMargins gam intergraph lme4 MASS network plm plyr RSiena sna VGAM]; }; netmeta = derive2 { name="netmeta"; version="2.8-2"; sha256="132qkvpkami568w276qc269844z0d1l3yjbj71if4r2w8ra3p5wy"; depends=[ggplot2 magic MASS meta metafor]; }; - netmhc2pan = derive2 { name="netmhc2pan"; version="1.3.1"; sha256="0q98rar7iglwxmf1274wrjcr7kp544ayrjhd286x68jmf51cqyrg"; depends=[assertive devtools dplyr rappdirs readr seqinr stringr testit tibble]; }; + netmhc2pan = derive2 { name="netmhc2pan"; version="1.3.2"; sha256="1hjmcimnj8m4ay5km3qrk1x0sgkpg89wrgs9pqlcd12f2b2aj7vn"; depends=[devtools dplyr rappdirs readr seqinr stringr testit tibble]; }; netplot = derive2 { name="netplot"; version="0.2-0"; sha256="0l4sy8wn2fd04fpkrh853r923dajpqldc78ws4kmh6ixn1l43c21"; depends=[igraph network sna]; }; - netrankr = derive2 { name="netrankr"; version="1.2.1"; sha256="14r5xy4j7d2vkbfrlylipx17n66kk7fl1n0hipx5hn6na5slxkfi"; depends=[igraph Matrix Rcpp RcppArmadillo]; }; + netrankr = derive2 { name="netrankr"; version="1.2.3"; sha256="0amvdgj0n32c9f46k0yqkahq2dzicc0522ivh76740l9n1hzbm4v"; depends=[igraph Matrix Rcpp RcppArmadillo]; }; netregR = derive2 { name="netregR"; version="1.0.1"; sha256="0n5absjra0imddz1spy1piij5rdz76wi4g568yby3rbhkm1896rs"; depends=[Matrix]; }; netropy = derive2 { name="netropy"; version="0.1.0"; sha256="1c7gmv4lm2i2bmvhan5v0w3s3qvaxq0l7f4q76jhcc9mlz0plbh1"; depends=[ggplot2 ggraph igraph]; }; nets = derive2 { name="nets"; version="0.9.1"; sha256="00adkyd2hm8aynpnk4avzss8fxkbaai74n5cf03vpwyc306jq0d7"; depends=[igraph]; }; @@ -13869,10 +14093,10 @@ in with self; { netstat = derive2 { name="netstat"; version="0.1.2"; sha256="0d26w0xyi5645132bxybsy8zadfcfifbwp5s22r0cnd546czjvz8"; depends=[]; }; nett = derive2 { name="nett"; version="1.0.0"; sha256="1prb1zskhc50jzqmh1cdk4lljr4xqp4aaaaw1r66hmpy0d9ghhph"; depends=[foreach magrittr Matrix Rcpp RcppArmadillo]; }; nettskjemar = derive2 { name="nettskjemar"; version="0.1.4"; sha256="0cghjk9hw3m0b6xalqg0p7v60jvshcfy6z5sfl4p2z6y17pkf72b"; depends=[dplyr here httr jsonlite pbapply purrr rvest tidyr usethis xml2]; }; - network = derive2 { name="network"; version="1.18.1"; sha256="0hyj7h0z6mvf0jq0fb5z9nny4c71pwqjl7w0z864in3754sp03f8"; depends=[magrittr statnet_common tibble]; }; + network = derive2 { name="network"; version="1.18.2"; sha256="0yx20v3izm7037cx5swc19966z97w7q9xw4p2p6skfyap4nqjcxz"; depends=[magrittr statnet_common tibble]; }; networkABC = derive2 { name="networkABC"; version="0.8-1"; sha256="0754770z3db7faadh8bxk0h70frjk6v8zjklkhclxnach1vag2k6"; depends=[network RColorBrewer sna]; }; networkD3 = derive2 { name="networkD3"; version="0.4"; sha256="02wxki67drppgfka1is1ykg1f2rxf0x0657c0crj7ipfy62jbf1k"; depends=[htmlwidgets igraph magrittr]; }; - networkDynamic = derive2 { name="networkDynamic"; version="0.11.3"; sha256="0nwfcis6hxca99kbcqv90g0hrfxgwqc7mml0jh4xq32wv384yric"; depends=[network networkLite statnet_common]; }; + networkDynamic = derive2 { name="networkDynamic"; version="0.11.4"; sha256="0ija33qxka8nw6rikvcz5b6648scmq7mcaayjbzq7wa4lhbf5wvb"; depends=[network networkLite statnet_common]; }; networkDynamicData = derive2 { name="networkDynamicData"; version="0.2.1"; sha256="176al8jp0gha6yzhyn5flmyackmmdnh1h8sasqrdcmba7ha7cya6"; depends=[network networkDynamic]; }; networkGen = derive2 { name="networkGen"; version="0.1.1"; sha256="1vnh5dajiaf47kx1sxyp744mlk3yvl4sxj380i3b3ic1wlgyd2h1"; depends=[igraph mgcv]; }; networkLite = derive2 { name="networkLite"; version="1.0.5"; sha256="12vifn3vnhk0nk357759zp154v3l8hyapjqygkz31czhz3a5baxa"; depends=[dplyr network statnet_common tibble]; }; @@ -13893,13 +14117,15 @@ in with self; { neutralitytestr = derive2 { name="neutralitytestr"; version="0.0.3"; sha256="1660v7nng6dj9gwn04ynirms0g10wpsz33i26va229zdviqm5cyy"; depends=[cowplot dplyr ggplot2 ggpmisc pracma scales]; }; nevada = derive2 { name="nevada"; version="0.2.0"; sha256="0ba5wbjsgd77f20flp9zqiasmypbxsmqg2yfw0qqwzjrkp3rvfqi"; depends=[cli dplyr flipr forcats furrr ggplot2 igraph magrittr purrr Rcpp RcppArmadillo rgeomstats rlang tibble tidyr tsne umap withr]; }; neverhpfilter = derive2 { name="neverhpfilter"; version="0.4-0"; sha256="097nfz30pf4bd95l943ccsvndni0n8c6gpcdk5dv02802mcg0h81"; depends=[xts zoo]; }; + new_dist = derive2 { name="new.dist"; version="0.1.1"; sha256="1zkmwqhamrw7g4d1hffsyhcsjf0z0nmmgnixc7wny0qqpmyqlb2n"; depends=[expint pracma VGAM]; }; newFocus = derive2 { name="newFocus"; version="1.1"; sha256="0j7wl4yf4dnz4vbbnhsk39w9zqbnad2lhxwqbns1plhdd02hzsfr"; depends=[ctgt]; }; newTestSurvRec = derive2 { name="newTestSurvRec"; version="1.0.2"; sha256="06p782md33wqh5wa1735yg5i01d42p74kl7h5qhqs9cd732ls6pz"; depends=[]; }; newsanchor = derive2 { name="newsanchor"; version="0.1.1"; sha256="1s8qhq9jk5gnsimnvy7kdayya0ks0ly309l7zxm5rafj5x7k5vwn"; depends=[askpass devtools httr jsonlite lubridate tidyr xml2]; }; newscatcheR = derive2 { name="newscatcheR"; version="0.1.2"; sha256="18r9lmg9q6fj0ggnpqggqywsbycblsdc42mdcpc2abzp98dsvww9"; depends=[tidyRSS]; }; newsmap = derive2 { name="newsmap"; version="0.8.3"; sha256="08gdjszasfc62yz7q4s6a5971v0c0ddncryyfq1blpi6qqikjyhj"; depends=[Matrix quanteda quanteda_textstats stringi]; }; newsmd = derive2 { name="newsmd"; version="0.5.1"; sha256="06iq628ysfbaawhx5yxkxh8a9d3nmzq87n80l88kj84k1lg1s5ph"; depends=[R6]; }; - nextGenShinyApps = derive2 { name="nextGenShinyApps"; version="1.6"; sha256="0yvjchdxd8zxilq05x5ihjh10wzn9cz8cp6sr6jrnxgkiyrgh46q"; depends=[htmltools shiny]; }; + nextGenShinyApps = derive2 { name="nextGenShinyApps"; version="2.0"; sha256="0994y5qnhxp23c6m08mgr9pp44jcm277qwxzq4fnsdy0gndcjrcw"; depends=[htmltools quickcode shiny]; }; + nexus = derive2 { name="nexus"; version="0.1.0"; sha256="0k0q6jq768gjnc0znnw5zbg98jcvqbjla5bs56zv8z8sgirhakn0"; depends=[arkhe dimensio isopleuros MASS]; }; nfer = derive2 { name="nfer"; version="1.1.3"; sha256="0s19ks4ildxqdbm4nv40f6c0rs1a6h9vx46654k8n0q18bgia448"; depends=[]; }; nfl4th = derive2 { name="nfl4th"; version="1.0.4"; sha256="1ilvchs7g26ks6wgb8s8av0pm10s161fqiahcwbsm5xfy9bh8q78"; depends=[backports curl dplyr glue httr janitor jsonlite magrittr mgcv nflfastR nflreadr purrr rlang stringr tibble tidyr tidyselect xgboost]; }; nflfastR = derive2 { name="nflfastR"; version="4.6.0"; sha256="1zbl8khwhf9g4bw5fbcr73wa17g8jia6w23ziqq5pvsc1ygabyga"; depends=[cli curl data_table dplyr fastrmodels furrr future glue janitor mgcv nflreadr progressr rlang stringr tibble tidyr tidyselect xgboost]; }; @@ -13907,9 +14133,9 @@ in with self; { nflreadr = derive2 { name="nflreadr"; version="1.4.0"; sha256="1437nzvqj0w5p3wxb0zfwjkn34ssd4q9zbsw0lmrbs0afifaf6dd"; depends=[cachem cli curl data_table glue memoise rappdirs rlang]; }; nflseedR = derive2 { name="nflseedR"; version="1.2.0"; sha256="0nk6264alv0d8d1wj7xqk4m57rl1w185jj5qj58d9hwiy2wmzvqz"; depends=[cli data_table dplyr furrr future gsubfn magrittr nflreadr progressr purrr rlang tibble tidyr]; }; nflverse = derive2 { name="nflverse"; version="1.0.3"; sha256="1pamkg80b83gb5ab3zshh36xsr31ihv6qbh1aa42m6k4g1wk5g3r"; depends=[cli crayon magrittr nfl4th nflfastR nflplotR nflreadr nflseedR rlang rstudioapi]; }; - nftbart = derive2 { name="nftbart"; version="1.6"; sha256="193507ii4f78g81937dixk7mja23sdicb0fvi0g3ryi0xjh913q0"; depends=[nnet Rcpp survival]; }; + nftbart = derive2 { name="nftbart"; version="2.1"; sha256="1vxmjk5bbxyqmrb3mndafcnpx9n8q9rlxm3d1i6fncs78mqqjsnm"; depends=[nnet Rcpp survival]; }; ngboostForecast = derive2 { name="ngboostForecast"; version="0.1.1"; sha256="019l9w7m6lkbf0m9mlsd24agjasbzi7dmy72faq1s4xg49a5xa9a"; depends=[dplyr forecast magrittr R6 reticulate]; }; - ngram = derive2 { name="ngram"; version="3.2.2"; sha256="04cafc0i3605vlxmiwfyf91572ppg3wmm0hi50y9x7ai12bznchc"; depends=[]; }; + ngram = derive2 { name="ngram"; version="3.2.3"; sha256="0dkscnj6v3pafwpw1vabgr7zgx97jh6996ql38pq6bmiikn5pm0h"; depends=[]; }; ngramr = derive2 { name="ngramr"; version="1.9.3"; sha256="0iiaw8w3z8r45i129r78jwj4yicrp3lfzp7im6qmfn9k6v2bpsfv"; depends=[cli curl dplyr ggplot2 httr rjson rlang scales stringr textutils tibble tidyr xml2]; }; ngramrr = derive2 { name="ngramrr"; version="0.2.0"; sha256="1p8s4p3h27g647rxx9qjfad5dzbngjbmvhw4gz0jbsmfqrsf72by"; depends=[tau tm]; }; ngspatial = derive2 { name="ngspatial"; version="1.2-2"; sha256="09hdvmbna4m62zv18k5kj9718wzw7p43wnal2j6aa0m5sd2rx9rz"; depends=[batchmeans Rcpp RcppArmadillo]; }; @@ -13917,14 +14143,13 @@ in with self; { nhdR = derive2 { name="nhdR"; version="0.6.1"; sha256="1cf3lfkflwbvswdqnp74zrb7ndc2vbm9jj8dny1gqq3x9ciiy8gw"; depends=[curl digest dplyr foreign ggplot2 httr maps memoise purrr rappdirs rlang rvest sf stringr units xml2]; }; nhdplusTools = derive2 { name="nhdplusTools"; version="1.0.0"; sha256="109gipkpmszipljm19c1f9mrjpf647vk9kyz7dwcpwlra7x21ay3"; depends=[arrow dataRetrieval dplyr fst httr hydroloom jsonlite magrittr mapsf maptiles pbapply R_utils sf tidyr units xml2 zip]; }; nhlapi = derive2 { name="nhlapi"; version="0.1.4"; sha256="1c5s7fd9agzk20xi8v38dk8ih6lmn8c90mxncyr996bhipgr7vl3"; depends=[jsonlite]; }; - nhlscrape = derive2 { name="nhlscrape"; version="0.1.3"; sha256="0x6y747j6lha3jw4v2wavgd12xw5nx4m8biv9rmq9z0qy53vncjc"; depends=[DBI httr jsonlite RSQLite rvest xml2]; }; - nhm = derive2 { name="nhm"; version="0.1.0"; sha256="1yf9hnbmfb7xj8mbhnq40wvd0pd88x9qspy1jr3x0n8nb75i3jlp"; depends=[deSolve maxLik mvtnorm]; }; + nhm = derive2 { name="nhm"; version="0.1.1"; sha256="1xc2kfc4g9f9nmsgm2fk5qhvlghgcyqiz9b5vr34a1x73cs9g0b8"; depends=[deSolve maxLik mvtnorm]; }; nhs_predict = derive2 { name="nhs.predict"; version="1.4.0"; sha256="0lgyi1v940pjqfpwligw5ml6vagiz8wwsxbr9kfd1j70b5i0kjwd"; depends=[]; }; nhsnumber = derive2 { name="nhsnumber"; version="0.1.2"; sha256="10vm3591gjr13ggnagjkh0v2915yl05mwyphpckimmrrbc3zsdip"; depends=[]; }; nhstplot = derive2 { name="nhstplot"; version="1.2.0"; sha256="1m06w5mys5qwhah7hg3fwrzlbpckgvhn17jqzg36cyprpd02zx52"; depends=[ggplot2]; }; niaidMI = derive2 { name="niaidMI"; version="1.1.0"; sha256="0cg349qdlbixdyfzs5ahaf218a8gcpb2rvm0xaabsq9ray9gmq1a"; depends=[Rcpp]; }; nic = derive2 { name="nic"; version="0.0.2"; sha256="1bsmwdnkxmpp1wr7w4qmpm1x8vgllif0yqbn4n0k477bzlm9p7m4"; depends=[]; }; - nice = derive2 { name="nice"; version="0.4-1"; sha256="1p8vmimiq9sbjvbx6c2wqwwkpnzw4kkdvjry6qyadmm3frwhj5qb"; depends=[]; }; + nice = derive2 { name="nice"; version="0.4-2"; sha256="0v4vd66kcblm0mq1ri73hs9vv79h03wmh7h60bj7vj1dlf4yzqj5"; depends=[]; }; nicheROVER = derive2 { name="nicheROVER"; version="1.1.2"; sha256="03xal1bm4wfvq6943v1n3d0782yxcmlqjwxj4i0dgr3yi72759x2"; depends=[]; }; nichevol = derive2 { name="nichevol"; version="0.1.20"; sha256="18c3l9mm4dh0pxpliv2sx7nyijdhmzgcd36xkzclhhh067lxifrs"; depends=[ape castor geiger stringr terra]; }; nieve = derive2 { name="nieve"; version="0.1.3"; sha256="0r1acnb771wvxnpjzgrvxfs8fc6xibgggxk4smhq62nnyjlp0big"; depends=[]; }; @@ -13948,27 +14173,28 @@ in with self; { nlMS = derive2 { name="nlMS"; version="1.1"; sha256="01ijg1bp3r0dg8ph7qpsx3hqzrrvfhbykml20hqchxk7c5n2w9wz"; depends=[nlme]; }; nlWaldTest = derive2 { name="nlWaldTest"; version="1.1.3"; sha256="1cppdz8qvigjdz4sgr1gm2j09zi407xxmryc28zc7ps7rvgy344h"; depends=[]; }; nlcv = derive2 { name="nlcv"; version="0.3.5"; sha256="1ywnm8a13ifqa1bxnf659h1j6mg9iy02vaszyh9p966ps9c1pjab"; depends=[a4Core Biobase e1071 ipred kernlab limma MASS MLInterfaces multtest pamr randomForest RColorBrewer ROCR xtable]; }; - nleqslv = derive2 { name="nleqslv"; version="3.3.4"; sha256="1kqgjgrid0s4f5rr7kcmw2h1zkb5vfvl2nnzrvc5s5fdbd9fg0r7"; depends=[]; }; + nleqslv = derive2 { name="nleqslv"; version="3.3.5"; sha256="0fjby0qva2lp2i7x752wva0z15xqys9fgrrcfimqszg65wnig60j"; depends=[]; }; nlgm = derive2 { name="nlgm"; version="1.0"; sha256="03byqqj8ayq7hbaab4cfrk0nbxmiiq2c2i98szfydzkimhrw922a"; depends=[ggplot2 Rfast Rfast2]; }; nlist = derive2 { name="nlist"; version="0.3.3"; sha256="1wq7bp834c7cl37wbrgd9ars3mm0s5c3l3fxlrry728a27c27f9h"; depends=[abind chk coda extras generics lifecycle purrr term tibble universals]; }; - nlive = derive2 { name="nlive"; version="0.1.0"; sha256="03nxazkb0ndriafh28dfqmyrzcpxa0fqflnlpbkjaa83g4im75j3"; depends=[dplyr ggplot2 knitr lcmm nlraa Rmisc saemix sitar sqldf]; }; - nlme = derive2 { name="nlme"; version="3.1-163"; sha256="12hj7icn0xgsm67awzf8x8afhckxmb98rci9c7gsizdp9x6gyikx"; depends=[lattice]; }; + nlive = derive2 { name="nlive"; version="0.2.0"; sha256="15h55ck0xha905wjg89rf8gcz49c3kpd5sqb2xxxkg9z4mlbn1q8"; depends=[dplyr ggplot2 knitr lcmm nlraa Rmisc saemix sitar sqldf]; }; + nlme = derive2 { name="nlme"; version="3.1-164"; sha256="1s6lpp4hpjhyn7ygfngw2f60a40kbbikd0y2wqzbhdvhrqha19br"; depends=[lattice]; }; nlmeU = derive2 { name="nlmeU"; version="0.70-9"; sha256="10vk098mv8h9hv6cn8sih2fmg9cjsqmvndqzqm8bbaahla1v6n7q"; depends=[nlme]; }; nlmeVPC = derive2 { name="nlmeVPC"; version="2.6"; sha256="0ymiif377c6rjplzvs3s4bgc62ymw2l3cigx8rh779blb0w90qf8"; depends=[ggplot2 Hmisc optimx quantreg Rcpp RcppArmadillo timeDate]; }; - nlmixr2 = derive2 { name="nlmixr2"; version="2.0.9"; sha256="1mfbm053jkmqkg7hdvzczpfx35r9xc6113vxl20561pk2zxh9fq7"; depends=[cli crayon lotri magrittr nlmixr2data nlmixr2est nlmixr2extra nlmixr2plot rxode2]; }; + nlmixr2 = derive2 { name="nlmixr2"; version="2.1.0"; sha256="0hd2bqwc7p5wl1akpii86nsxz14kq8a358aqm8vm7k8a1isg3dq8"; depends=[cli crayon lotri magrittr nlmixr2data nlmixr2est nlmixr2extra nlmixr2plot rxode2]; }; nlmixr2data = derive2 { name="nlmixr2data"; version="2.0.8"; sha256="1szf14wda6gagp32qm3w7dv5yyk91vs105q69b29x6nc6zi1zkxv"; depends=[]; }; - nlmixr2est = derive2 { name="nlmixr2est"; version="2.1.8"; sha256="1lxlma1yij9mnycgsbqdz6mp5fvvjs69x198gs1qdg12g5n2wb5x"; depends=[backports BH checkmate cli knitr lbfgsb3c lotri magrittr Matrix minqa n1qn1 nlme nlmixr2data Rcpp RcppArmadillo rex rxode2 rxode2parse rxode2random symengine]; }; + nlmixr2est = derive2 { name="nlmixr2est"; version="2.2.0"; sha256="1a56h5d1914kkh6sxcbvv2rp7s6zf0k8680l02g7ncngab1yxszm"; depends=[backports BH checkmate cli knitr lbfgsb3c lotri magrittr Matrix minqa n1qn1 nlme nlmixr2data Rcpp RcppArmadillo rex rxode2 rxode2parse rxode2random symengine]; }; nlmixr2extra = derive2 { name="nlmixr2extra"; version="2.0.8"; sha256="1sxbkqwhj6lg49c3ah4kylvak1lgj2was6mqsh82klvp72fd61fd"; depends=[checkmate cli crayon data_table digest ggplot2 ggtext lotri nlme nlmixr2est Rcpp RcppArmadillo rxode2 symengine]; }; nlmixr2lib = derive2 { name="nlmixr2lib"; version="0.2.0"; sha256="1clar5nw77dc07q1l014ajc5avfdd2n82chdpbv1gcs2mfyrwr9r"; depends=[checkmate cli nlmixr2est rxode2]; }; nlmixr2plot = derive2 { name="nlmixr2plot"; version="2.0.7"; sha256="0bpb9pxdjpwg3kqldbmw8vlq2w843dgyv0q13265kbcpwqhqmnma"; depends=[ggplot2 nlmixr2est nlmixr2extra rxode2 vpc xgxr]; }; nlmixr2rpt = derive2 { name="nlmixr2rpt"; version="0.2.0"; sha256="1lc7pmh97wggfms2in37f5bdrri914ninr58ah92215p3fxcqmls"; depends=[cli dplyr flextable ggforce ggplot2 ggpubr nlmixr2 nlmixr2extra onbrand rxode2 stringr xpose xpose_nlmixr2 yaml]; }; - nlmm = derive2 { name="nlmm"; version="1.0.2"; sha256="0pmw3a8mqmdli2rx8pgmq8i5l045jvcdidx9a7pgcfyymv9sqfpv"; depends=[BH lqmm MASS Matrix mvtnorm nlme numDeriv Qtools Rcpp RcppArmadillo statmod]; }; + nlmm = derive2 { name="nlmm"; version="1.1.0"; sha256="0mi9nsdzsvaxfb3n3z3rijd8saw4l7x3g2gq8ivzxyilyav5anxb"; depends=[BH gsl lqmm MASS Matrix mvtnorm nlme numDeriv Qtools Rcpp RcppArmadillo statmod]; }; nlmrt = derive2 { name="nlmrt"; version="2016.3.2"; sha256="1g0qq0a933ay65gkp04qgn2wqk6vw79pj2a228c2ski4rcmkjxyn"; depends=[]; }; nlnet = derive2 { name="nlnet"; version="1.4"; sha256="13lv4b6chsjrhimny3wc1y9ljgbxmm1byj4j04n4vj8icn87gyfd"; depends=[coin e1071 earth fdrtool igraph randomForest ROCR TSP]; }; + nlopt = derive2 { name="nlopt"; version="0.1.1"; sha256="0vn4ml4gs04q5f26zml3kmf2f2354f7zhlp04ldxs1vdp6b72yrp"; depends=[stringr]; }; nloptr = derive2 { name="nloptr"; version="2.0.3"; sha256="1mqnjswm0dl6vqc8b2s5k3n1mhanaha3l33vh68dh6zx8q9aq9kv"; depends=[testthat]; }; nlpred = derive2 { name="nlpred"; version="1.0.1"; sha256="05jna8hzd5v36a0dwag6zr8ms1pkryas3qarwb946bkxlslffp27"; depends=[assertthat bde cvAUC data_table np Rdpack ROCR SuperLearner]; }; nlpsem = derive2 { name="nlpsem"; version="0.3"; sha256="0i6skpmnbi99dkcdam61rq5rfk6wv41q0r1q357qm66wbqyj30fr"; depends=[dplyr ggplot2 Matrix nnet OpenMx readr stringr tidyr]; }; - nlraa = derive2 { name="nlraa"; version="1.9.3"; sha256="0bwlx9hv8a2a6220lsvwlgn0jwq9r3mbn095gffk5s6g80lgmm8r"; depends=[boot knitr MASS Matrix mgcv nlme]; }; + nlraa = derive2 { name="nlraa"; version="1.9.7"; sha256="0xl2vinwj6pclmq1lcyibff0fwr3jnmi96ddgj42vvki19n9c84c"; depends=[boot knitr MASS Matrix mgcv nlme]; }; nlreg = derive2 { name="nlreg"; version="1.2-2.2"; sha256="0gkcxg5m287axhvkl00xy26vidawhhb1ii1s13rh49v0yccwvvqh"; depends=[statmod survival]; }; nlrr = derive2 { name="nlrr"; version="0.1"; sha256="09wm8s5sadkhkq9pb3fjk66cb2xn8py46w1d7yp7fjhczh31bjsq"; depends=[Hmisc rms]; }; nlrx = derive2 { name="nlrx"; version="0.4.4"; sha256="1ki8jhaa6ngqk046p61ssi0q9bskvc7vlz9j3d5ax0n118j5gx2q"; depends=[crayon dplyr EasyABC furrr genalg GenSA igraph lhs magrittr progressr purrr raster readr rstudioapi sensitivity sf stringr tibble tidyr XML]; }; @@ -13976,7 +14202,6 @@ in with self; { nls2 = derive2 { name="nls2"; version="0.3-3"; sha256="05miqxfpg29jpf1p3bi347w5565bd3cih8dpvnc3p0i0hcbzmlkl"; depends=[proto]; }; nlsMicrobio = derive2 { name="nlsMicrobio"; version="0.0-3"; sha256="0vn0yv1h8idv91g7qhx8qfyvsvw4rbx7i8r8kfv13d40j1w4cfab"; depends=[nlstools]; }; nlsem = derive2 { name="nlsem"; version="0.8-1"; sha256="0xw32bpd2snxyxl90sjdn5c0447jq9s6c58vxq40prg738mfqx06"; depends=[gaussquad lavaan mvtnorm nlme orthopolynom]; }; - nlshelper = derive2 { name="nlshelper"; version="0.2"; sha256="02xnx0j8p1im1hdwnia3n51dicscjf8s33y475i3dczvhmivvbmf"; depends=[broom dplyr magicaxis mgcv nlme]; }; nlshrink = derive2 { name="nlshrink"; version="1.0.1"; sha256="0adnr7g3n3brwlvyix8wa7h59gj036l5anv8abqy80ysmfcmsp0y"; depends=[MASS nloptr]; }; nlsic = derive2 { name="nlsic"; version="1.0.4"; sha256="02xvmzq1yv8bz6wksx4nck9ljxkprsn8xk39chjilir6jddkh6fq"; depends=[nnls]; }; nlsmsn = derive2 { name="nlsmsn"; version="0.0-6"; sha256="1wrqfmsb3l4bsdncyjl7hh3vwj9s6l43p7klww6f4k21asvh4p5s"; depends=[]; }; @@ -13984,7 +14209,7 @@ in with self; { nlstac = derive2 { name="nlstac"; version="0.2.0"; sha256="0q62bnwdnw4jjzj1gk74il4k5bc2lvaixckaqdqk9q4rkyx6p0z5"; depends=[Deriv foreach stringr]; }; nlstools = derive2 { name="nlstools"; version="2.0-1"; sha256="1pbsdmg1gaf0v0w5ij75l381f8h91dnc7vlbl8za3aws1cxhjaw5"; depends=[]; }; nlt = derive2 { name="nlt"; version="2.2-1"; sha256="10wf00qzf28dxjfvv12wsqxlfn6xz15wk8njrzgsgm9px1g6s21f"; depends=[adlift EbayesThresh]; }; - nltm = derive2 { name="nltm"; version="1.4.4"; sha256="0ps6rl0yafg8ajwfk3iqbgjngq354bfbys619p5c94i498bigwcf"; depends=[survival]; }; + nltm = derive2 { name="nltm"; version="1.4.5"; sha256="10w8nagb51wcbf5v082lgqw13f1dznhas77cmhsqp9d23iw52waq"; depends=[survival]; }; nlts = derive2 { name="nlts"; version="1.0-2"; sha256="0s49qjwavl9ns2746nn4zy4h4dh0njfcvznm3qd61qhs7np9w1db"; depends=[acepack locfit]; }; nmaINLA = derive2 { name="nmaINLA"; version="1.1.0"; sha256="1qjb5n1qr89rv2a5ay2p74cs3i6swkn8wllklgn57fnahb9pcrgi"; depends=[]; }; nmadb = derive2 { name="nmadb"; version="1.2.0"; sha256="17r5vc57ilhy6cfcqpfyp9nzzjaa5gc8qkgfn3y8sppqh1g1mi40"; depends=[devtools jsonlite RCurl readxl]; }; @@ -14002,12 +14227,12 @@ in with self; { nncc = derive2 { name="nncc"; version="1.0.1"; sha256="131mka187q7367ba0ac0ad45hfwnbfmdlxikjdqkbi7ci234yj8l"; depends=[cluster dplyr formula_tools furrr ggplot2 igraph mgcv mice rlang tidyr]; }; nndiagram = derive2 { name="nndiagram"; version="1.0.0"; sha256="0x6gv8rmvnqvvwxgqmkybmvmf4g94im0lardkmb5a043krvgh3i4"; depends=[dplyr]; }; nnet = derive2 { name="nnet"; version="7.3-19"; sha256="1rrc70shnrnn7gyq5fhnmw841a06d8y0vp5pp8xv1lvhj931y959"; depends=[]; }; - nnfor = derive2 { name="nnfor"; version="0.9.8"; sha256="0333c7h8lx1r9brw4dabyd28hyqvsr14hpsykbgx646k0xfkhrkr"; depends=[forecast generics glmnet MASS neuralnet plotrix tsutils uroot]; }; + nnfor = derive2 { name="nnfor"; version="0.9.9"; sha256="0jrp840vr5jyk76808l0d1r46hhvz0l0vimwdc82wilfh8sb5sz5"; depends=[forecast generics glmnet MASS neuralnet plotrix tsutils uroot]; }; nngeo = derive2 { name="nngeo"; version="0.4.7"; sha256="0scfclw2prjfgm1liwbbys9ds00pyb0fk8q0mw6d6nqnbrw9kfnd"; depends=[data_table nabor sf units]; }; nnlasso = derive2 { name="nnlasso"; version="0.3"; sha256="1n7karlmgq61z9ywfx9xb5wvmxx40ydpnzzazj1xr70qlv5m0qk4"; depends=[]; }; nnlib2Rcpp = derive2 { name="nnlib2Rcpp"; version="0.2.3"; sha256="02vjfidbpkd38zsikd63wkx091rm481js3a7pgryv768ddia728g"; depends=[Rcpp]; }; nnls = derive2 { name="nnls"; version="1.5"; sha256="0lilga63p7k5mkkfcf5p3swx76vwysl979jxszm6svzqhsrgww6d"; depends=[]; }; - nnspat = derive2 { name="nnspat"; version="0.1.1"; sha256="0h17p87fzsqizldgxvmis4s8wyyhc0f95amdl8j7fw2kcmrivnay"; depends=[MASS pcds Rdpack]; }; + nnspat = derive2 { name="nnspat"; version="0.1.2"; sha256="1svqdb20x5d4wsbi97lhjwkhl623ksawf4w4w1f0hwsx0f3xjzvi"; depends=[MASS pcds Rdpack]; }; nnt = derive2 { name="nnt"; version="0.1.4"; sha256="1rrqq8m3plsq13hsh53h948wbx37gl87hplj4ms2pxxf1zwqsmnj"; depends=[survival survRM2]; }; noaaoceans = derive2 { name="noaaoceans"; version="0.3.0"; sha256="0pxsddzkrprzjch173shhmd7c2h6rh5xzs3n5bbs97l51ni8m60m"; depends=[httr jsonlite rvest xml2]; }; noaastormevents = derive2 { name="noaastormevents"; version="0.2.0"; sha256="1d93h8av0bbv7a56g6m000qpsnzqpfdla0fmcj5y8fbbqkipxnfr"; depends=[choroplethr choroplethrMaps data_table dplyr forcats ggplot2 hurricaneexposure lubridate magrittr maps plyr RColorBrewer RCurl rlang stringr tibble tidyr viridis XML]; }; @@ -14015,7 +14240,7 @@ in with self; { noctua = derive2 { name="noctua"; version="2.6.2"; sha256="1j7ikcviapdddyi71zwybcjyj6f1kyszb44vmbcq7jmvm7iazvmx"; depends=[data_table DBI paws uuid]; }; nodbi = derive2 { name="nodbi"; version="0.9.8"; sha256="1ypwxy560pgn5zza1fv6ip0wh1y872lrf7a1blk2lvwf1q38dlkr"; depends=[DBI jqr jsonlite stringi uuid]; }; node2vec = derive2 { name="node2vec"; version="0.1.0"; sha256="03gfpn4xgmdwlrpwi9pdpnh6k75mwp85j6vywkj0jsxhz3rbg95g"; depends=[data_table dplyr igraph rlist vctrs vegan word2vec]; }; - nodeSub = derive2 { name="nodeSub"; version="1.2.7"; sha256="08ai25fkvnc026hif096f2389m553xqrcz08fkp2yjgavv5rrai6"; depends=[ape babette beastier beautier DDD geiger lifecycle mauricer pbapply phangorn phylobase rappdirs Rcpp Rmpfr stringr testit tibble tracerer]; }; + nodeSub = derive2 { name="nodeSub"; version="1.2.8"; sha256="1ks9bx2kswbhcw2sbnx3zx2pbx0n30b5f6awr5haviw29zv24izw"; depends=[ape beastier beautier DDD geiger lifecycle pbapply phangorn phylobase rappdirs Rcpp Rmpfr stringr testit tibble tracerer]; }; nodiv = derive2 { name="nodiv"; version="1.4.2"; sha256="1yz2ynn7cfwjim3bmwvf4v7fflghc2kfx9frwz2m85l9pcr3qlx0"; depends=[ape picante raster sp vegan]; }; nofrills = derive2 { name="nofrills"; version="0.3.2"; sha256="1sclrzn7m0r4pxmv9vs0ay0l892p6kdz3yzdqwfkzzp8z45n6yzk"; depends=[rlang]; }; noia = derive2 { name="noia"; version="0.97.3"; sha256="18n2pmjmx1xqmshfvan1s7hlaciz05xhplg8zphcjhm2hfq7svv2"; depends=[]; }; @@ -14024,12 +14249,12 @@ in with self; { noisyCE2 = derive2 { name="noisyCE2"; version="1.1.0"; sha256="02zkkyys9qknwm39gz4j4pvlvkd5qlvxqaprklzsd40dgz39cwq4"; depends=[magrittr]; }; noisySBM = derive2 { name="noisySBM"; version="0.1.4"; sha256="1zdkxr48kvpqs49figxxznq3d45nalja92lyal71m066s1blc6dg"; depends=[ggplot2 gtools RColorBrewer]; }; noisyr = derive2 { name="noisyr"; version="1.0.0"; sha256="05nvxz5qa4lsi62va74yq4m68nlacjkl8xj5nsq7dik3357y53dr"; depends=[doParallel dplyr foreach GenomicRanges ggplot2 IRanges magrittr philentropy preprocessCore Rsamtools tibble]; }; - nolock = derive2 { name="nolock"; version="1.0.4"; sha256="1n62fjnscfflvxya4j2km2vbg352gw3irlh8p2mrfil8k157vpnp"; depends=[crayon pacman rstudioapi stringr]; }; + nolock = derive2 { name="nolock"; version="1.1.0"; sha256="1d909qq6091rbsmnls2lc8l64iy7cam281s4854v4iar8l4dxh77"; depends=[crayon NCmisc rstudioapi stringr]; }; nombre = derive2 { name="nombre"; version="0.4.1"; sha256="16hpr628j8rzxg5k71qsgc9xhz1w4gpi3fry5vp1mbwvalmlish2"; depends=[fracture]; }; nomclust = derive2 { name="nomclust"; version="2.8.0"; sha256="1bl92zaf4iidm48xjxj0v812lx7gk3i3frvb59xr71y91ranwjpv"; depends=[cluster clValid Rcpp]; }; nominatimlite = derive2 { name="nominatimlite"; version="0.2.1"; sha256="1lz4bnml9vs8rc7p71kiwwr0g38lvawbhsfj62a5cy8g1fxpghjw"; depends=[dplyr jsonlite sf]; }; nomisr = derive2 { name="nomisr"; version="0.4.7"; sha256="0mf301nhsl71h79jxfkwa27j5nifsxp7y6vxbnx87rybr80b3hg1"; depends=[dplyr httr jsonlite rlang rsdmx snakecase tibble]; }; - nomnoml = derive2 { name="nomnoml"; version="0.2.7"; sha256="0dbn03agq02d28agzgwz92m2lr76c7xzpa7p5bj684fzw7zsks3w"; depends=[htmlwidgets lifecycle png rlang webshot]; }; + nomnoml = derive2 { name="nomnoml"; version="0.3.0"; sha256="0akxxc2yjpn0h7xvfpflmazihxnk9hpkn0l3353gbll388qxd620"; depends=[htmlwidgets lifecycle png rlang webshot2]; }; nomogramEx = derive2 { name="nomogramEx"; version="3.0"; sha256="16235rwblnzn8k53817llwy2pzhnpifh6ij159nxymjm8ar9qpbp"; depends=[pracma rms]; }; nomogramFormula = derive2 { name="nomogramFormula"; version="1.2.0.0"; sha256="1j6g5kndl0n2g8acwq8pn09sk0bjcsphbcd77ha1j5dnwdmy73c0"; depends=[do Hmisc rms]; }; nomordR = derive2 { name="nomordR"; version="0.1"; sha256="02d5gk5pd4vpd61ys9x81maxjrmbshx1wdv6xxsvafrnz7a7pmks"; depends=[]; }; @@ -14040,7 +14265,7 @@ in with self; { nonlinearICP = derive2 { name="nonlinearICP"; version="0.1.2.1"; sha256="1m9a1f0yrbjl0nx2l7r76pyi78b2bxj8v4jx92yga91f975mw6np"; depends=[caTools CondIndTests data_tree randomForest]; }; nonlinearTseries = derive2 { name="nonlinearTseries"; version="0.2.12"; sha256="0fdyr7a5pac40wrrn6frj0q8pn03dic5a2rls3zr85yj48mimyfs"; depends=[lifecycle Matrix Rcpp RcppArmadillo tseries zoo]; }; nonmem2R = derive2 { name="nonmem2R"; version="0.2.4"; sha256="1lnm2mniccpsk30njmi0b18aizblg5wadm3k2kdviyxi8j2735rw"; depends=[ggplot2 gridExtra lattice latticeExtra MASS mvtnorm reshape2 splines2]; }; - nonmem2rx = derive2 { name="nonmem2rx"; version="0.1.2"; sha256="0z4mx08ajnqsq6lqhkvskxsiskpm05c5095mc874774s04qzs8by"; depends=[checkmate cli crayon data_table digest dparser ggforce ggplot2 lotri magrittr qs Rcpp rxode2 rxode2parse xml2]; }; + nonmem2rx = derive2 { name="nonmem2rx"; version="0.1.3"; sha256="008lxg0n09alrv07i96crs430q6zvg5siasyqrfmaahq7cclsynn"; depends=[checkmate cli crayon data_table digest dparser ggforce ggplot2 lotri magrittr qs Rcpp rxode2 rxode2parse xml2]; }; nonmemica = derive2 { name="nonmemica"; version="1.0.8"; sha256="000pjp7zk3pw7xhg0w8363b1q52l6ikqjpvdxjd1kb61y99bi6m2"; depends=[csv dplyr encode lazyeval magrittr metaplot rlang spec tidyr xml2]; }; nonneg_cg = derive2 { name="nonneg.cg"; version="0.1.6-1"; sha256="1ppwv5yad8v7qhjr4z5p5vl51ry3sxqbmg0ynkx11j67byggn6xf"; depends=[Rcpp]; }; nonnest2 = derive2 { name="nonnest2"; version="0.5-6"; sha256="1s31a03c148azvc20ihmz8vhzgs7a3r0nxzf806zsr5j1zsl94dm"; depends=[CompQuadForm lavaan mvtnorm sandwich]; }; @@ -14049,15 +14274,15 @@ in with self; { nonparametric_bayes = derive2 { name="nonparametric.bayes"; version="0.0.1"; sha256="1acrjh0fcr15b9k2hpg0ihfav0w2lzjdpjyayz3f4hx596j32vi8"; depends=[mvtnorm progress]; }; nopaco = derive2 { name="nopaco"; version="1.0.7"; sha256="0ffcbrk3l2xprd4jiilvk6i5l39x4mi7vrx4irzqnf3m9nwsz6w5"; depends=[Matrix]; }; nopp = derive2 { name="nopp"; version="1.1.2"; sha256="1kcgwhwj02bivqqd86l9gk3gqiws9c4kjcsjmd0arcfd1bcygbj2"; depends=[MASS mlogit]; }; - nor1mix = derive2 { name="nor1mix"; version="1.3-0"; sha256="1817wcvlmxs70vs4db0jkxd7i037744zz8ay3c2a9949z29fxr4w"; depends=[]; }; + nor1mix = derive2 { name="nor1mix"; version="1.3-2"; sha256="0252kqhdsp374isc59pm1c6dmsb16jibpnsp1bpyh4k5mg73cdj6"; depends=[]; }; nord = derive2 { name="nord"; version="1.0.0"; sha256="1gisqca85vzbqq5hs5bgqjgrjyksxj176x97kv9vv6mwll8kijl9"; depends=[ggplot2]; }; nordklimdata1 = derive2 { name="nordklimdata1"; version="1.2"; sha256="0c2hbh3qy8nrs275lxpzfgqsfgwp81m4kv0layvnjj09fcybm54x"; depends=[]; }; - norgeo = derive2 { name="norgeo"; version="2.3.1"; sha256="1437b49ig7j5c3ympb8mjn0qz43szpmwqd3s8rlqmlfhycnh9maw"; depends=[data_table DBI httr2 magrittr odbc RSQLite writexl]; }; norm = derive2 { name="norm"; version="1.0-11.1"; sha256="1g33g721c0f2b275b334ir6n0h81fh567vs9vrxk60y21z1ydzy2"; depends=[]; }; + normalize = derive2 { name="normalize"; version="0.1.0"; sha256="0c0vmq54mrj0h95q7hdvi9m7c1gdbiyhik5y3gbban8k6fzav0y7"; depends=[]; }; normalizeH = derive2 { name="normalizeH"; version="1.0.0"; sha256="19lychfrv57yk245rzais4hx17csz1s6wm5vk6p7ypr6h9slf2cq"; depends=[]; }; - normalp = derive2 { name="normalp"; version="0.7.2"; sha256="0fqpz6v9v3xjmyh7mh2yvkjdn3v4d0nk93x7s0gj28kazl7137kz"; depends=[]; }; + normalp = derive2 { name="normalp"; version="0.7.2.1"; sha256="150zzv9rxbss1xliv3nd8x8103bijsrsczk17s9q6z39x8v079nc"; depends=[]; }; normalr = derive2 { name="normalr"; version="1.0.0"; sha256="1ahrg188vbhnrnwag0zi6lcb3g0y1mbz06sl3j1wyllq5l918cc7"; depends=[magrittr MASS purrr rlang shiny]; }; - normfluodbf = derive2 { name="normfluodbf"; version="1.4.3"; sha256="0slmkqpqi3c3mrjd0ybg2bij1cgrn03ixs6mizjq048r3qbxgipq"; depends=[data_table foreign tibble tidyr]; }; + normfluodbf = derive2 { name="normfluodbf"; version="1.5.2"; sha256="1xhvwrkjhdxdzh9p1wmnxmskn6q5658s0v63p9x67b30g5s2bsca"; depends=[badger data_table dplyr emojifont foreign ggplot2 ggthemes rio stringr tibble tidyr]; }; nortest = derive2 { name="nortest"; version="1.0-4"; sha256="17r0wpz72z9312c70nwi1i1kp1v9fm1h6jg7q5cx1mc1h420m1d3"; depends=[]; }; nortestARMA = derive2 { name="nortestARMA"; version="1.0.2"; sha256="11ala9z0snsbn1xmj9yzs4kyh9js1w19x0dnnmh5cbr9bi7aag50"; depends=[astsa]; }; nortsTest = derive2 { name="nortsTest"; version="1.0.3"; sha256="0wn4xljczy4z9j95mxisi7gyn2j262zzhp2skz4wj8c5kxj1pc6g"; depends=[forecast ggplot2 gridExtra MASS nortest tseries uroot zoo]; }; @@ -14078,7 +14303,8 @@ in with self; { nparMD = derive2 { name="nparMD"; version="0.2.1"; sha256="0wfmw1d4w8frbimq62749siy28bzci3h3lhsl5jx7zl7mxpl0q9a"; depends=[Formula gtools MASS matrixcalc matrixStats]; }; nparcomp = derive2 { name="nparcomp"; version="3.0"; sha256="1cs1idaylxdajb9vwpp6rkk56178i4c9nd0rxj8jbmdr56w4nrgq"; depends=[multcomp mvtnorm]; }; nparsurv = derive2 { name="nparsurv"; version="0.1.0"; sha256="1qy9qkkpqrk49vjxbyvl25i4kfk0py6v64izd8lmaw38dynybpy2"; depends=[survival TH_data]; }; - npboottprm = derive2 { name="npboottprm"; version="0.1.0"; sha256="0a2c846vhvpz8nc4f1ar91px275y9fs570v7k9pdny4dw0kq1zqh"; depends=[ggplot2 shiny shinythemes]; }; + npboottprm = derive2 { name="npboottprm"; version="0.2.0"; sha256="17ml1m91i95k87h0aijbskah2wz9lybvgp7dc0918j69cm12zp6s"; depends=[DT fGarch ggplot2 lmPerm MASS MKinfer shiny shinythemes sn]; }; + npboottprmFBar = derive2 { name="npboottprmFBar"; version="0.1.0"; sha256="0qi6jd5xpg27h6hk65xr51hvd1vdy6jhyiq1zl07jc2r2kifr74i"; depends=[fGarch lmPerm npboottprm restriktor]; }; npbr = derive2 { name="npbr"; version="1.8"; sha256="1mvl16z4s517a87ljl1ksr1ixrz3c6v22hv36s6x60f9rcs96jj8"; depends=[Benchmarking np quadprog Rglpk]; }; npclust = derive2 { name="npclust"; version="0.1.0"; sha256="0a1las0vxm4mhwvds66lvq87kb140sjrnjq5sihbrrh7wpbq31zg"; depends=[ggplot2 MASS]; }; npcopTest = derive2 { name="npcopTest"; version="1.03"; sha256="1kpa3avi95aa93y038f4zqhhdp8vdscdk0c6397qmqjg34hf1dnr"; depends=[]; }; @@ -14091,12 +14317,12 @@ in with self; { nphPower = derive2 { name="nphPower"; version="1.0.0"; sha256="0jqrbjm56nmhrmhsidz0bzyifq6kpqch8r64j8vd98b7xgcb6w4h"; depends=[MASS mvtnorm survival zoo]; }; nphRCT = derive2 { name="nphRCT"; version="0.1.0"; sha256="0b29izx3rz17g0jx72s33jj8ps0z3kq8fj2v0035hcjacnswz9ya"; depends=[ggplot2 purrr survival]; }; npi = derive2 { name="npi"; version="0.2.0"; sha256="0akf9m46iy18nqm678sga1dxq1135jj33yrxz30yhd75w6nicgri"; depends=[checkLuhn checkmate curl dplyr glue httr magrittr purrr rlang stringr tibble tidyr]; }; - nplplot = derive2 { name="nplplot"; version="4.6"; sha256="1sxmz0cl15fdc0s987nwjnl6ywxg4fqs8qnm5nkcbyj6b9jzcbwy"; depends=[]; }; + nplplot = derive2 { name="nplplot"; version="4.7"; sha256="18959kvp68h3lp1zwv726rfsj509mcdmjx0qh41qrff76cdhvrb7"; depends=[]; }; nplr = derive2 { name="nplr"; version="0.1-7"; sha256="1h3qv9dlw2gx8km3slyvrl588nif1n87df8xwmm6p75ziqhn2f56"; depends=[]; }; nplyr = derive2 { name="nplyr"; version="0.2.0"; sha256="0n9pl6igjpdvsp39d7h5xr64c1ixlhc8bcxpbl70mz95p7jrld8h"; depends=[assertthat dplyr purrr rlang tidyr]; }; npmlda = derive2 { name="npmlda"; version="1.0.0"; sha256="1dr25an7cac89jyb8zhmj3ry6lq7sh7zxci1injplnk4gzy17mc5"; depends=[]; }; npmlreg = derive2 { name="npmlreg"; version="0.46-5"; sha256="1f0bzccmral2y56aih37gmi6mjww6wmp2a8z6yxm501fgj2lgzfc"; depends=[statmod]; }; - npmr = derive2 { name="npmr"; version="1.3"; sha256="1h5cqbkmmswnmaf0b67akiybab9zpi1nvjj5wkdxiwiss7n1an7z"; depends=[]; }; + npmr = derive2 { name="npmr"; version="1.3.1"; sha256="0g6lrmsm62vkjax8jmsvlh9zhgwrjyydz79xiw0p7cw77f1c7jjf"; depends=[Matrix]; }; npmv = derive2 { name="npmv"; version="2.4.0"; sha256="04lfks2rlax59gxdnbgkpmk2vaax718z6hkgsvmyxf52iby6rvlr"; depends=[Formula]; }; npordtests = derive2 { name="npordtests"; version="1.2"; sha256="1axzcyy45h3rs67m0i3cvwbmza1mnmraxan9j4zlpxdd5x9nz4h8"; depends=[]; }; nppbib = derive2 { name="nppbib"; version="1.2-0"; sha256="1nn6wf89jhr3gy4rcd6px0cd5b1bsr7pbaxng4adba8n3yrss7vs"; depends=[]; }; @@ -14108,19 +14334,21 @@ in with self; { nproc = derive2 { name="nproc"; version="2.1.5"; sha256="1p5wjz0rafg27fsl48l9pmki3px1k0pav3ignz4swik5i1nhnc8w"; depends=[ada e1071 glmnet MASS naivebayes randomForest ROCR tree]; }; nprotreg = derive2 { name="nprotreg"; version="1.1.1"; sha256="152z2wsm4gwqw51imk80vxg9spvl9293vqsja8d8gh1rmsm6m5r2"; depends=[foreach]; }; npsf = derive2 { name="npsf"; version="0.8.0"; sha256="011y8k3sdhhgzf4yn0wdxx55yv4kdpgyhj0bbm6krjdpphnr9557"; depends=[Formula Rcpp]; }; + npsm = derive2 { name="npsm"; version="1.1.1"; sha256="0ri0nn7ahagwcgyq75z20a2xprfagwxynjim8q9ls5y7vav17486"; depends=[class plyr Rfit]; }; npsr = derive2 { name="npsr"; version="0.1.1"; sha256="1fzvilzjg9z05991sr1s1bdp17kfl6d1580qdllk8is9ac06np0v"; depends=[gmp infotheo MASS]; }; npsurv = derive2 { name="npsurv"; version="0.5-0"; sha256="1ihxhb42cga1hssj2jv4ah0f4hlwsky899ij5261fzh1wxvdp1xw"; depends=[lsei]; }; npsurvSS = derive2 { name="npsurvSS"; version="1.0.1"; sha256="0k9xvxii5527vynf7yy50j7z4jhxgk5ydhdcaaygm9ynx5yq14ip"; depends=[]; }; nptest = derive2 { name="nptest"; version="1.1"; sha256="1yfxpw3xlscv0maqgvadxj93qgs25w027lk2br1zlckll8dvdakz"; depends=[]; }; npwbs = derive2 { name="npwbs"; version="0.2.0"; sha256="029vxc6iy1p6nv0vw6097rvpkwlf0a24643gr6dbycpbail9qlqg"; depends=[]; }; - nrba = derive2 { name="nrba"; version="0.2.0"; sha256="0vlc0w2x2rpddgwxsr5zi2kgfzpvnkfskznjm2q77svigpb3lpc2"; depends=[broom dplyr magrittr survey svrep]; }; + nrba = derive2 { name="nrba"; version="0.3.1"; sha256="1d3mgz9riy14a7n7swzizjl8y5qmbk9p9c01ml968nk60ivb6ppv"; depends=[broom dplyr magrittr rlang srvyr survey svrep tidyr]; }; nricens = derive2 { name="nricens"; version="1.6"; sha256="0fpgp6k3mhb0qxbx6248k9bscnmlzwj70mqh631a1nc4cpdjvw3q"; depends=[survival]; }; + nsRFA = derive2 { name="nsRFA"; version="0.7-16"; sha256="1l6072fqpqlzpp5350mg98vsv0w58mcn8masvyivfqqw9v5h4bzn"; depends=[]; }; nsROC = derive2 { name="nsROC"; version="1.1"; sha256="1fi7k61fja98kpn528jprjdycwz01rnqm368m82anxh21k7q4s1m"; depends=[sde survival]; }; nsarfima = derive2 { name="nsarfima"; version="0.2.0.0"; sha256="0sv63anrsh0ajfvvkb44zsvc7sxws3xpsgwxqa951gy98w8h58g5"; depends=[]; }; nscancor = derive2 { name="nscancor"; version="0.7.0-6"; sha256="1fcw3qpsc7kpg2ha1qkp2277ir2kyhy71vjwypfp49y7nqiwm7kh"; depends=[]; }; nse = derive2 { name="nse"; version="1.21"; sha256="0mw2ijc6z0l8sa7z5fbcapp1rl87zhh5v32iw1mcjw4khwc93bk7"; depends=[coda mcmc mcmcse np Rcpp sandwich]; }; nser = derive2 { name="nser"; version="1.5.0"; sha256="0l03qkh6b2n2vq4piz583vb3b8jmgh1m5rm47fs2w2faqxxs2y9f"; depends=[curl dplyr googleVis lubridate magrittr purrr readr reticulate rvest stringr xml2]; }; - nseval = derive2 { name="nseval"; version="0.4.3"; sha256="07pabn4msb6q50x67z84flb8fpzf43s1dy61cnqd7rn4l7zgc181"; depends=[]; }; + nseval = derive2 { name="nseval"; version="0.5.1"; sha256="10b9kvvnlgc0jpbjnpkjmrkbl8plbkbggckwzy41kv41ha7rgda2"; depends=[]; }; nsga2R = derive2 { name="nsga2R"; version="1.1"; sha256="1b3kkd1mi6g13bl2mkzqyvz0ki296fa9pv055r8mpkdm6gk12lb4"; depends=[mco]; }; nsga3 = derive2 { name="nsga3"; version="0.0.3"; sha256="1jv3kw22jw24n7lnwhq3857mygr2yfv8c5xp3lbqqgz5840cdfa1"; depends=[mlr parallelMap rPref xgboost]; }; nsm3data = derive2 { name="nsm3data"; version="0.1"; sha256="15m3x7jmwmh3rs65v5j39672253crc379zq3k6xigi6p7qnba7sn"; depends=[]; }; @@ -14130,13 +14358,13 @@ in with self; { nswgeo = derive2 { name="nswgeo"; version="0.3.3"; sha256="0nny1dh0c3nkwglqi6rgwgri8hx1h66bzfpy388bjcyc31nkmihr"; depends=[cartographer sf]; }; nsyllable = derive2 { name="nsyllable"; version="1.0.1"; sha256="1rxzfivg5pkx8485l4bxxrdnvik31g5jps5l386x0w7mfs6498jg"; depends=[]; }; ntdr = derive2 { name="ntdr"; version="0.3.3"; sha256="1v8lwsp9c81pg0i140fc9zfng6cf4a0p0jyc2k8gdg7hsl9dwks1"; depends=[curl dplyr httr lubridate purrr readxl rvest tidyr]; }; - ntsDists = derive2 { name="ntsDists"; version="1.0.0"; sha256="1vjzqbwqdg8drgbsxazlaalmzb2phsb9261pmpkiy4k0fcan7qzj"; depends=[]; }; + ntsDists = derive2 { name="ntsDists"; version="2.0.0"; sha256="1a0yqnrryx6irvcab4iwgnv6wmsndij4ycgbq2kbv86zkw2rgw59"; depends=[]; }; nucim = derive2 { name="nucim"; version="1.0.11"; sha256="12qfs4xd8lnkjhb0gkvxym07rndrwh5idvppj16v78amrk96rj5z"; depends=[bioimagetools EBImage fields stringr]; }; nullabor = derive2 { name="nullabor"; version="0.3.9"; sha256="19nfmsnzndg9pdjg7m9w4vm4c3209ny52cpjdhmmhggvf7dxaiyg"; depends=[dplyr forecast fpc ggplot2 magrittr MASS moments purrr rlang tibble tidyr tsibble viridis]; }; numDeriv = derive2 { name="numDeriv"; version="2016.8-1.1"; sha256="0idk02pqkziik932bd8k72d1q775g1is3m4bc861pcxfz6gx3i6q"; depends=[]; }; numGen = derive2 { name="numGen"; version="0.1.1"; sha256="1y41wq31r8126dz1sj23smq2k6v9yqczq4ddgzqb73dsrx9dmmc0"; depends=[]; }; numKM = derive2 { name="numKM"; version="0.2.0"; sha256="0g5jw12fmfc6nl6a3ghpslkjd2d7pbihl70sks35r7dalmr6ihzk"; depends=[survival]; }; - numOSL = derive2 { name="numOSL"; version="2.7"; sha256="05h73s5xspccx0wr8g5a7a3m3gnhj4qvisjykl4dwmsh80gh1r95"; depends=[]; }; + numOSL = derive2 { name="numOSL"; version="2.8"; sha256="08bkwr4mx7lxlwfavxggvfn6cbn3wqhyix0wbh92ayb2y92c7fp4"; depends=[]; }; numbat = derive2 { name="numbat"; version="1.3.2-1"; sha256="1b9bykgw3z7a8bky5yv2g402gdapv8kcla2kbbyqvs77x4wba4q4"; depends=[ape caTools data_table dendextend dplyr GenomicRanges ggplot2 ggraph ggtree glue igraph IRanges logger magrittr Matrix optparse parallelDist patchwork pryr purrr R_utils Rcpp RcppArmadillo RhpcBLASctl roptim scales scistreer stringr tibble tidygraph tidyr vcfR zoo]; }; numberofalleles = derive2 { name="numberofalleles"; version="1.0.1"; sha256="0rjl21844yqp2503gy71c6vg8xywc4lcx7qr9vwvkjw5wiwxls11"; depends=[partitions pedtools Rcpp ribd]; }; numbers = derive2 { name="numbers"; version="0.8-5"; sha256="02r2mlq3jygvwi7anbrrid6693qc7iklxhc9ksmqjdlmgzdxxmbp"; depends=[]; }; @@ -14151,9 +14379,9 @@ in with self; { nzffdr = derive2 { name="nzffdr"; version="2.1.0"; sha256="14s2dfrrknaswg4l69lncsdbd7algpd9pzgrhpip0vbmyq9pa2ni"; depends=[curl httr rlang stringi tidyr xml2]; }; nzilbb_labbcat = derive2 { name="nzilbb.labbcat"; version="1.3-0"; sha256="1nrd67d78klhnbslrpqaigbv1qrvl2nr6l9qhmgm2j34qpjrv7n5"; depends=[httr jsonlite rstudioapi stringr]; }; nzpullover = derive2 { name="nzpullover"; version="0.3.0"; sha256="0b3mz5i58m48fa1x7gv4l3gqj0gvrar201ph2l1gkbcnfmazwjp8"; depends=[]; }; - o2geosocial = derive2 { name="o2geosocial"; version="1.1.0"; sha256="158nbc45h4k677lgx9n976d9kz7hy8fb7z5s2v6pmkmh521jdn2a"; depends=[data_table geosphere ggplot2 outbreaker2 Rcpp visNetwork]; }; + o2geosocial = derive2 { name="o2geosocial"; version="1.1.1"; sha256="1vsp71c06vyryrbbm44ms57fqqprxidrnwbncqfgjfc1wrii4crw"; depends=[data_table geosphere ggplot2 outbreaker2 Rcpp visNetwork]; }; o2plsda = derive2 { name="o2plsda"; version="0.0.18"; sha256="17dmb82q4g7lspvrvrz9324qinkr07vlhxsr2vd5ikj7cqxivgmv"; depends=[dplyr ggplot2 ggrepel magrittr Rcpp RcppArmadillo]; }; - oHMMed = derive2 { name="oHMMed"; version="1.0.0"; sha256="114azwvl40rbkfir9ypgnsivjymlrfn72cwnqah7plwhq22llqvf"; depends=[cvms ggmcmc ggplot2 gridExtra mistr scales vcd]; }; + oHMMed = derive2 { name="oHMMed"; version="1.0.1"; sha256="17g74kss72l2isxl5klpdx7prq5fgpbf90cq9as8v6a9pkl75wif"; depends=[cvms ggmcmc ggplot2 gridExtra mistr scales vcd]; }; oRus = derive2 { name="oRus"; version="1.0.0"; sha256="0q6hgiidcpm95pyisndihxjg78v6k1zycdqd72309aankdk0g5h4"; depends=[dplyr knitr rmarkdown stringr tibble tidytext tm topicmodels xlsx]; }; oaColors = derive2 { name="oaColors"; version="0.0.4"; sha256="040sdqrk9dciylnnrrshlj06s9qhvngii9shx1p8412ip7mk8r1m"; depends=[MASS RColorBrewer]; }; oaPlots = derive2 { name="oaPlots"; version="0.0.25"; sha256="0c5ig1ar02vg38pjjmp3gd53ij1j7pzajs0zrlfajz141qkv2ysr"; depends=[ggplot2 oaColors]; }; @@ -14173,16 +14401,16 @@ in with self; { oc = derive2 { name="oc"; version="1.2.1"; sha256="0g4ij5g2xkkd73srm21b2xc170rgwbdsdx2qjkp3pr30axb0bf91"; depends=[pscl]; }; occ = derive2 { name="occ"; version="1.1"; sha256="1aka29qqwbd494kvi15yyyqkb9hks4ky2gcvykxhx2drm2fnsn4g"; depends=[]; }; occCite = derive2 { name="occCite"; version="0.5.6"; sha256="08bc0pi2i2fmc9fcmir150b7g8jnd58q3qaakw2gk25yjy14rp7j"; depends=[bib2df BIEN curl DBI dplyr ggplot2 htmltools httr leaflet lubridate RColorBrewer rgbif rlang RPostgreSQL stringr taxize tidyr viridis waffle]; }; - occumb = derive2 { name="occumb"; version="1.0.2"; sha256="1q4vfk9i3wk9hjm297rj3xw051ny6vqdx6zl32i7c9n7gyyk1dwm"; depends=[checkmate crayon jagsUI knitr]; }; + occumb = derive2 { name="occumb"; version="1.0.3"; sha256="1gvcfhj3lhqj9y9qm3fh0f66bckv4wslpy9ri1dan96lp4qlqx2f"; depends=[checkmate crayon jagsUI knitr]; }; occupancy = derive2 { name="occupancy"; version="1.2"; sha256="0j50vg1405n1hp72xqsq1hp3gdbfx5yq9w1zdv6dzjc6vjhbx00d"; depends=[matrixStats]; }; occupationMeasurement = derive2 { name="occupationMeasurement"; version="0.3.2"; sha256="03kq8sbcbb1swnc7rl2qqzmvlhfb7n5ba8q546v657cm35h15rr9"; depends=[data_table digest shiny stringdist stringr text2vec tm]; }; ocd = derive2 { name="ocd"; version="1.1"; sha256="06pyc352pvn85k76z9797gwk0ksbb3snvh6krysp68k3lcygq872"; depends=[]; }; - oce = derive2 { name="oce"; version="1.8-1"; sha256="0ryykzrlmqipqnjizxzyq084kibpfxid9m7k287ycfmli1d0m492"; depends=[gsw Rcpp]; }; + oce = derive2 { name="oce"; version="1.8-2"; sha256="1a9zld3q009v9bvqpkn4fy0qfrsjmcz9j1f0jva75ygi8hdywpyg"; depends=[gsw Rcpp]; }; oceCens = derive2 { name="oceCens"; version="0.1.2"; sha256="1ckp89n22scmjli30x99iaxgyk41a27v1n9gxjp9n29y66lw71nb"; depends=[survival]; }; oceanexplorer = derive2 { name="oceanexplorer"; version="0.1.0"; sha256="07l2la7nrqj8bsyv0flyjs08wishlvq6v2hx5n1g9kag4bcfl6vz"; depends=[bslib dplyr DT fs ggplot2 glue maps miniUI ncmeta purrr rlang RNetCDF rstudioapi sf shiny shinyFeedback shinyjs stars thematic waiter]; }; oceanic = derive2 { name="oceanic"; version="0.1.6"; sha256="12lrn13xfrxny8nqhjh5qg61bx1y8akyqxf7slbpg9npbwp04f1n"; depends=[broom ggplot2 maps sf sp spData]; }; oceanis = derive2 { name="oceanis"; version="1.8.5"; sha256="13zdzqjlf5pihji6np9a3m2j5ycy4jvfl75knzry2ir78zr9ngj7"; depends=[classInt dplyr DT ggplot2 htmlwidgets leaflet leaflet_extras lwgeom sf shiny shinyBS shinyjs shinythemes stringr webshot zip]; }; - oceanmap = derive2 { name="oceanmap"; version="0.1.5"; sha256="1g2d1irs1dki25p33lrhlnpaf77p91m3jsmc1hwznd7f876ggfh7"; depends=[abind extrafont fields ggedit ggplot2 lubridate mapdata maps ncdf4 plotly plotrix raster reshape2 sf sp]; }; + oceanmap = derive2 { name="oceanmap"; version="0.1.6"; sha256="12ppcqk2s14p7hg0a6b3hgnz90dxn3kagfgkpykz6ks93vjy8pd7"; depends=[abind extrafont fields ggedit ggplot2 lubridate mapdata maps ncdf4 plotly plotrix raster reshape2 sf sp]; }; oceanwaves = derive2 { name="oceanwaves"; version="0.2.0"; sha256="1v4gj4ippv1l3r77z2ic19x5zi5lpsh5wihaqay3264zhpb3kv9a"; depends=[bspec ggplot2 signal]; }; ocedata = derive2 { name="ocedata"; version="0.2.2"; sha256="0yj90gaaacq6d53di2vz23za5sz9wy2j626ib3cbdhvxg731pizk"; depends=[]; }; ocf = derive2 { name="ocf"; version="1.0.0"; sha256="04d0j863a2zqj3v9s9iwlc4v7fxpp6cydpphxcfr6n22f8ciq5bd"; depends=[glmnet Matrix orf ranger Rcpp RcppEigen stringr]; }; @@ -14191,10 +14419,11 @@ in with self; { ocomposition = derive2 { name="ocomposition"; version="1.1"; sha256="0fk8ia95yjlvyvmjw7qg72piqa40kcqq9wlb3flc6a81pys1ycb5"; depends=[bayesm coda]; }; ocp = derive2 { name="ocp"; version="0.1.1"; sha256="0q52s8j3z3xwnma3sxx6019qxid66bf0a43w4g8xjagplwps57dx"; depends=[]; }; ocs4R = derive2 { name="ocs4R"; version="0.2-3"; sha256="09zl9jl1kzvyq0wccp41j32pr3as93qh250iaawhwkpcswjpyl89"; depends=[curl httr jsonlite keyring openssl R6 XML]; }; - octopus = derive2 { name="octopus"; version="0.3.0"; sha256="1b71xjnjksz21v4dp0fwq90hsv09ab1wifz4x903qbgvbiv4ig8i"; depends=[bslib DBI dplyr DT glue httr janitor rio shiny shinyAce shinyjs]; }; + octopus = derive2 { name="octopus"; version="0.4.1"; sha256="0b1cyn8pj8i5dxjdm5qz4r3zly6v6cqg7dljfynsn6f4sdcc619a"; depends=[bslib data_table DBI dplyr DT glue httr janitor rio shiny shinyAce shinyjs]; }; octopusR = derive2 { name="octopusR"; version="1.0.1"; sha256="1hah1zphwrvj1kx344s9nxq8bw4q358fz9j487hi6dkfhjvg7j21"; depends=[askpass cli glue httr2 rlang tibble]; }; - od = derive2 { name="od"; version="0.4.2"; sha256="07qfpl4nm9s1ixpi87riwq9kj1v3p1qmcfyvmw2v14v04hzg9c22"; depends=[sfheaders vctrs]; }; - odbc = derive2 { name="odbc"; version="1.3.5"; sha256="0mvqf0my25djxvpx809rbm7484f0m6bpf8bqmg0c04avfiqg2c5i"; depends=[bit64 blob DBI hms Rcpp rlang]; }; + od = derive2 { name="od"; version="0.4.3"; sha256="1aw3nb12a5wdkz1728238gsjff2l11ypcr7jpgzk3ns8yps8f1mw"; depends=[sfheaders vctrs]; }; + odbc = derive2 { name="odbc"; version="1.4.1"; sha256="1brlf16klj4r2iz5c1d2hm5ipg6swhv41y65ys3yb9n4b035fzxd"; depends=[bit64 blob DBI hms Rcpp rlang]; }; + odbr = derive2 { name="odbr"; version="0.1.0"; sha256="03bdhmya86whrzijc8h6gvd4yzmivdskm42a80n4ryqn4szfyrpd"; depends=[data_table fs haven piggyback R_utils sf usethis]; }; oddnet = derive2 { name="oddnet"; version="0.1.0"; sha256="00r6pl0s715gk7sybl725sriqdpddabxhnjjz4y51vzl5fwwfcyv"; depends=[dplyr fable fabletools igraph lookout pcaPP rlang tibble tidyr tsibble]; }; odds_converter = derive2 { name="odds.converter"; version="1.4.8"; sha256="09s8pg55gpsxmrbimzg5rsr1n07la93781sar6vab5p9zn9zxgx4"; depends=[]; }; odds_n_ends = derive2 { name="odds.n.ends"; version="0.1.4"; sha256="1md0m1z8a6jnmkjj2njngpqpasnvgngdxj57r3jc7jq356qzg707"; depends=[MASS]; }; @@ -14209,7 +14438,7 @@ in with self; { odns = derive2 { name="odns"; version="1.0.2"; sha256="0a2ifmyrsfih5a7jwc0b6l9wl7c1s5x08fq5bfm27xm9jnb8fwsn"; depends=[data_table glue httr jsonlite]; }; odpc = derive2 { name="odpc"; version="2.0.5"; sha256="0cbkq8parb8br1j386xk5mgwz8gkmwvp79f9sjvzhs7z6wlbp0pv"; depends=[doParallel foreach forecast MASS Rcpp RcppArmadillo]; }; odr = derive2 { name="odr"; version="1.4.4"; sha256="037v6523kbl0izfzyg6lp6h4r5p8w23dp8r1fpx07wyr34q2w8vn"; depends=[]; }; - oeli = derive2 { name="oeli"; version="0.1.0"; sha256="16aw16gv9i6yy3hz9kidy2wrg0pwdq99wkqcn7q9skm8dvvi9yhd"; depends=[checkmate cli ggplot2 hexSticker Rcpp RcppArmadillo showtext sysfonts testthat usethis]; }; + oeli = derive2 { name="oeli"; version="0.3.1"; sha256="1wplzkmxpf5lzbmi3gdllrcb5khx16yji58jgbb42kf2v0zfz81k"; depends=[checkmate cli ggplot2 hexSticker latex2exp Rcpp RcppArmadillo rprojroot showtext sysfonts testthat usethis]; }; oem = derive2 { name="oem"; version="2.0.11"; sha256="0p9s68zgma9mcjnz0xg6h07yp38rqj209asg18hji8528iazbv8g"; depends=[BH bigmemory foreach Matrix Rcpp RcppArmadillo RcppEigen]; }; oenb = derive2 { name="oenb"; version="0.0.2"; sha256="1jgxw7ycx2lcdzglg9nix8k08fs4r6i5jdsjzrd6w1dg6smsinl5"; depends=[dplyr XML]; }; oesr = derive2 { name="oesr"; version="0.1.0"; sha256="078jjvm9d0g8jaab0x2z4h7h8m2pznamiglhkwv07xc65cskjmpb"; depends=[broom dplyr estimatr extrafont ggplot2 rlang sandwich tibble]; }; @@ -14225,7 +14454,7 @@ in with self; { ohoegdm = derive2 { name="ohoegdm"; version="0.1.0"; sha256="1p1jica3fr4a5ilz1m2gxyzbapxjvgiw4v5rn90d5qgsmbp1hj42"; depends=[Rcpp RcppArmadillo]; }; ohsome = derive2 { name="ohsome"; version="0.2.2"; sha256="0zw4r1sv46mfxzbp620a00wsh9i1dc21lmf1iadsdm4iss8pjk44"; depends=[geojsonsf httr jsonlite readr sf]; }; ohtadstats = derive2 { name="ohtadstats"; version="2.1.1"; sha256="0hkjs322vii1dsminlkwpwi12sc9pd88jag7p4dmy6nfw2hh2d69"; depends=[lattice]; }; - ohun = derive2 { name="ohun"; version="1.0.0"; sha256="09rx31ij775si18b4pfl11djfzzrpf1j324kbldhdq94kz18mf8f"; depends=[checkmate cli fftw ggplot2 igraph rlang seewave sf tuneR warbleR]; }; + ohun = derive2 { name="ohun"; version="1.0.1"; sha256="103s9sv70p9hw6q55j98wri5bxqazfn9hxpk1mm39x7navx3qzvp"; depends=[checkmate cli fftw ggplot2 igraph rlang seewave sf tuneR warbleR]; }; oii = derive2 { name="oii"; version="1.0.2.1"; sha256="1n41hikn53ikyynsravg127cw5csa8s0s1l63w5hym7c6j625ya5"; depends=[Deducer gmodels rapportools]; }; ojsr = derive2 { name="ojsr"; version="0.1.2"; sha256="0nwdws9kqnya9qjc939b7ksrf7ri6d25zzcdxhyhabirhnrqdg7m"; depends=[dplyr magrittr purrr rlang rvest tidyr urltools xml2]; }; okxAPI = derive2 { name="okxAPI"; version="0.1.1"; sha256="0wysfpkij9l265clw6qi4zpr1c860idxfp82xz2nmy1l5b2n8ri0"; depends=[base64enc data_table digest httr jsonlite R6 websocket]; }; @@ -14238,14 +14467,14 @@ in with self; { omics = derive2 { name="omics"; version="0.1-5"; sha256="1y2x33mfgq98nglhvpr1wq1v6nfiq4njy2yac47x72rpwxsj9vb1"; depends=[lme4 pheatmap]; }; omicsTools = derive2 { name="omicsTools"; version="1.0.5"; sha256="0k6cpdxafz6x5360m97x8mvvi09mb36yx42slkq6nr4axpm089pf"; depends=[bs4Dash config dplyr DT golem magrittr readr shiny tibble]; }; omicwas = derive2 { name="omicwas"; version="0.8.0"; sha256="03l53vbsard0hpaffcaa9l1aa3nh3w16j00k2jz2jqrrg02z0d7h"; depends=[broom data_table dplyr ff glmnet magrittr MASS matrixStats purrr rlang tidyr]; }; - omnibus = derive2 { name="omnibus"; version="1.2.7"; sha256="1wqhizr19w6kx1gb1p34arr23m2272chfyaf5bpb8rqjb9zkswdz"; depends=[]; }; + omnibus = derive2 { name="omnibus"; version="1.2.9"; sha256="1shd5a519vac8m80869hssjfhl3i5k9ia0z2a0dgfbqsdd591nsv"; depends=[]; }; ompr = derive2 { name="ompr"; version="1.0.4"; sha256="02glc09yrdvwls0i8ik1wh6fp3qa9ry55xd3yy3xk0rav8r3hcj3"; depends=[data_table fastmap lazyeval listcomp Matrix rlang]; }; ompr_roi = derive2 { name="ompr.roi"; version="1.0.2"; sha256="1w0cyw5ixkri8523vdcfrlaf49farhgdf1bxiizwk5gppb3w5ibl"; depends=[Matrix ompr ROI slam]; }; omsvg = derive2 { name="omsvg"; version="0.1.0"; sha256="018sphpmmgpq5alag0il83q51f3r3jx3pnnzjrvg4gn6691nkwvz"; depends=[dplyr gt htmltools magrittr rlang sass xml2]; }; omu = derive2 { name="omu"; version="1.1.1"; sha256="0hkm6m6jbzbbh0ksnzkwjf6fvyzx64mixwq4rjbj0n2a1rl3mc4d"; depends=[broom caret dplyr FSA ggfortify ggplot2 httr magrittr plyr randomForest rstatix stringr tidyr]; }; onadata = derive2 { name="onadata"; version="0.1"; sha256="0l7fqskgqm421mcijmbbb1xgi99y1j673qil5r9whwfdxk78xgqc"; depends=[]; }; onbabynames = derive2 { name="onbabynames"; version="0.0.1"; sha256="13sp9gnqnsx2b8dq13qnkin813clnanh6hzv3vi7bxy514pvmisj"; depends=[tibble]; }; - onbrand = derive2 { name="onbrand"; version="1.0.3"; sha256="1kqi84b91vqgsx5h3k690qn6hfxssj8fh72bvsqbk1x819sdk77w"; depends=[dplyr flextable ggplot2 magrittr officer rlang stringr yaml]; }; + onbrand = derive2 { name="onbrand"; version="1.0.4"; sha256="01wvv7dzjdpwyj4rfks2z442f4nh3y9jl6v9ykcl4jqzj4d0agvv"; depends=[digest dplyr flextable ggplot2 magrittr officer rlang stringr yaml]; }; onc_api = derive2 { name="onc.api"; version="2.0.1.0"; sha256="10scbhg6aniqzrbkblhfhz9ni710xzppbzfrr4wrhsy1z5y2nfwc"; depends=[anytime crayon httr humanize lubridate stringi testthat tictoc]; }; once = derive2 { name="once"; version="0.4.1"; sha256="0yshpww3rq68m0qx7kid3zlcxi1nf81vmziclyvpg61aikj8fhx5"; depends=[magrittr]; }; oncoPredict = derive2 { name="oncoPredict"; version="0.2"; sha256="1slq5vp78n5hcq24vlg35r6xansdgriyjw8y9iyb0lj3cdaq38c3"; depends=[BiocGenerics car gdata genefilter GenomicFeatures GenomicRanges glmnet IRanges maftools org_Hs_eg_db pls preprocessCore readxl ridge S4Vectors sva tidyverse TxDb_Hsapiens_UCSC_hg19_knownGene]; }; @@ -14262,20 +14491,21 @@ in with self; { onion = derive2 { name="onion"; version="1.5-0"; sha256="07q5wwphb6jsk7ya7hgsf5782yalvhyc7h43hsd9rg4rhpmy8in9"; depends=[emulator]; }; onlineBcp = derive2 { name="onlineBcp"; version="0.1.8"; sha256="1pwpnmpgh3hl8mv1pbn577dn832nxbsfaxn3hqghvs4dn06lwngf"; depends=[VIM]; }; onlineCOV = derive2 { name="onlineCOV"; version="1.3"; sha256="04ikvsd76f6xhja7djyv433m88lfj2vf0y9qi6x1s4i9kh8xkbz9"; depends=[]; }; - onlinePCA = derive2 { name="onlinePCA"; version="1.3.1"; sha256="08qivsfnwz5vp089lv9czsaz3nfi42kn9yhgzf27dji18y2xscic"; depends=[Rcpp RcppArmadillo RSpectra]; }; + onlinePCA = derive2 { name="onlinePCA"; version="1.3.2"; sha256="1xc9kjqvpspymywzaykw4nw14y43fi4ydwj4jfhvx5ws51f7y9i8"; depends=[Rcpp RcppArmadillo RSpectra]; }; onlineforecast = derive2 { name="onlineforecast"; version="1.0.2"; sha256="0qj9943hmcf584b7czf877zg5rxz8byg97dkk3gnb57q5ar60f3z"; depends=[digest pbs R6 Rcpp RcppArmadillo]; }; onlineretail = derive2 { name="onlineretail"; version="0.1.2"; sha256="0lid3g4v51c664304cxgjm209qxv88hqglv89frmj4afc0y6k7sc"; depends=[]; }; onls = derive2 { name="onls"; version="0.1-2"; sha256="19pgrhr7xzas4s592l4sgv1dfynf3s3d227zwcdv6z6wrxh40hyj"; depends=[minpack_lm]; }; onmaRg = derive2 { name="onmaRg"; version="1.0.3"; sha256="0n4gf8fx6c4abwxcajz8bpsfvgl42dflb99wfn4632csag1a50rl"; depends=[dplyr httr readxl sf stringr]; }; onnx = derive2 { name="onnx"; version="0.0.3"; sha256="1s0swrcff9v9ffbjkraahmb398gh2jrca2wf5k6gs8037frnl8wd"; depends=[reticulate]; }; onpoint = derive2 { name="onpoint"; version="1.0.4"; sha256="06zdgxcizw66l9ll8g1wsbrj0c4zl8zp2z7l2cn4sz45kr3qkvfg"; depends=[ggplot2 spatstat_explore spatstat_geom spatstat_random]; }; - onsr = derive2 { name="onsr"; version="1.0.1"; sha256="0qazwqdbbinsrimn7rf7xcjz5l5zp372i5j54rp87xy098q7c0l3"; depends=[httr jsonlite readr tibble]; }; + onsr = derive2 { name="onsr"; version="1.0.2"; sha256="07aa0rq41vw4xy76fwwjwcvl2bv15phh5bsk4xb3j7gahy6g9xxi"; depends=[httr jsonlite readr tibble]; }; onsvplot = derive2 { name="onsvplot"; version="0.3.2"; sha256="06jkq25ivi8qn3c46616a7z47g2qfjpvnfwlzjx8shw4c36j5737"; depends=[ggplot2]; }; ontoFAST = derive2 { name="ontoFAST"; version="1.0.0"; sha256="0l3d8bp86849rp0qrs1dfv7bjmrfdqvahb1x656vk69fi20722ma"; depends=[dplyr ontologyIndex pbapply plyr shiny shinydashboard stringr sunburstR usethis visNetwork]; }; ontologics = derive2 { name="ontologics"; version="0.7.0"; sha256="1ggdnydxl5xdh8vjjxna778d3c3wvw1rcvvjdcnrllms8i30cvga"; depends=[beepr checkmate dplyr fuzzyjoin httr magrittr purrr rdflib readr rlang stringr tibble tidyr tidyselect]; }; ontologyIndex = derive2 { name="ontologyIndex"; version="2.11"; sha256="17ndvqvb74b980gpb3hpg9bd68bb5f52k9s1i2kd1f9cdrdjvw97"; depends=[]; }; ontologyPlot = derive2 { name="ontologyPlot"; version="1.6"; sha256="0n51x2im134wq3a54wrv02j1pgkpm1qcgb9hd0y6fchz43i039j1"; depends=[ontologyIndex paintmap Rgraphviz]; }; ontologySimilarity = derive2 { name="ontologySimilarity"; version="2.5"; sha256="035z572lbsfcnr9c0hl8gir1kgk0dw8dxzr3v8dqd93k6jr6kaxb"; depends=[ontologyIndex Rcpp]; }; + ontophylo = derive2 { name="ontophylo"; version="1.1.2"; sha256="0xdib7jfb6s2vkq58x7kywhw7pn8laddc6rrf83dmq0wv9pihdfx"; depends=[ape dplyr fANCOVA ggplot2 grImport magrittr ontologyIndex phytools purrr RColorBrewer stringdist tibble tidyr truncnorm]; }; oolong = derive2 { name="oolong"; version="0.5.0"; sha256="1if27qswf17614pn94vx5pcmg1j55wvjkmrf63zdyfw4a7sapsc8"; depends=[cli cowplot digest ggplot2 irr keyATM purrr quanteda R6 shiny tibble]; }; oompaBase = derive2 { name="oompaBase"; version="3.2.9"; sha256="1cmw2s5dznmv675484jgvkzgvi6vhg0zbxsq6zhpqsisf672pjhl"; depends=[cluster]; }; oompaData = derive2 { name="oompaData"; version="3.1.3"; sha256="0gdp7bghgpz3q0h06w8r926x7wkpcvkpyf0v5qfi1qixbpvk5fdf"; depends=[]; }; @@ -14285,8 +14515,8 @@ in with self; { opGMMassessment = derive2 { name="opGMMassessment"; version="0.3.5"; sha256="09ii297524q2bgw2iqvd4s5bhnmm6gm5dh4lxskq1yxynfqdl77r"; depends=[AdaptGauss caTools cluster ClusterR DataVisualizations DistributionOptimization doParallel dplyr foreach ggplot2 mclust mixAK mixtools multimode NbClust rlang]; }; opa = derive2 { name="opa"; version="0.8.1"; sha256="1dh7lzprcaz0j24npvmx7rr8yn8nlr5dp77zr4mmhwgv6912mv24"; depends=[Rcpp RcppArmadillo]; }; opalr = derive2 { name="opalr"; version="3.4.0"; sha256="0gc677px1kwvwhkgqpwgg18nwi4hl76c98a2das404966x320dk3"; depends=[httr jsonlite labelled mime progress readr tibble]; }; - opdisDownsampling = derive2 { name="opdisDownsampling"; version="0.8.2"; sha256="0laf24x2h6xwhd5wwcwi1iqg5gni29bmlfr86yrvpdrdgr7f4cha"; depends=[benchmarkme caTools doParallel foreach memuse pracma twosamples]; }; - openCR = derive2 { name="openCR"; version="2.2.5"; sha256="003xhwskxjh0m9mvp8sdkbjmcb0i0wya1s8d8frnzgsbim2ymi22"; depends=[abind BH MASS nlme plyr Rcpp RcppParallel secr stringr]; }; + opdisDownsampling = derive2 { name="opdisDownsampling"; version="0.8.3"; sha256="0aq7ghy5syiic0nplnp74qhyw1yxih9bsfc0jgvz45zvcsp4gdwx"; depends=[benchmarkme caTools doParallel foreach memuse pracma twosamples]; }; + openCR = derive2 { name="openCR"; version="2.2.6"; sha256="08cqv6xxv35hzllab0glb42h54racgqk0x3dvam6lk7c561kbas4"; depends=[abind BH MASS nlme plyr Rcpp RcppParallel secr stringr]; }; openEBGM = derive2 { name="openEBGM"; version="0.9.1"; sha256="19q5xlvgc91mcr6sjzppgkmvdlfb6cr7rs952i2yys3w7ylwk3bj"; depends=[data_table ggplot2]; }; openMSE = derive2 { name="openMSE"; version="1.0.0"; sha256="15jp9hybnkwmnkcqawhpd3y3imq6wfxxzxzh90yx4cvzky36hf89"; depends=[crayon DLMtool MSEtool SAMtool]; }; openNLP = derive2 { name="openNLP"; version="0.2-7"; sha256="15yl74wv6w1d2wwpn1xlkkpam3c62977gnqal651fv623v29gg35"; depends=[NLP openNLPdata rJava]; }; @@ -14295,24 +14525,25 @@ in with self; { openVA = derive2 { name="openVA"; version="1.1.1"; sha256="1qnp9p25xlphf4ns6p27l0ylk169zi831l5ww2pw4ilw1dvmhk21"; depends=[cli crayon ggplot2 InSilicoVA InterVA4 InterVA5 Tariff]; }; openai = derive2 { name="openai"; version="0.4.1"; sha256="1fi1nc9c7kfnig6b5ifpb1v9r3gxszk984rwyq7i1lb6s5jv0b9z"; depends=[assertthat glue httr jsonlite lifecycle magrittr]; }; openair = derive2 { name="openair"; version="2.18-0"; sha256="1hvwb6p5skwpi1i5gvag3kxzvzxi9f4mph53y3gr6r0s8azfnvz0"; depends=[cli cluster dplyr hexbin lattice latticeExtra lubridate mapproj MASS mgcv purrr Rcpp readr rlang tibble tidyr]; }; - openairmaps = derive2 { name="openairmaps"; version="0.8.0"; sha256="18acrnb57cmq7z4sxnyjaa1nc8l52wa9fijgcb30garz8lhlldab"; depends=[cli dplyr forcats ggmap ggplot2 ggtext leaflet lifecycle lubridate magrittr mgcv openair purrr rlang sf stringr tibble tidyr tidyselect]; }; - openalexR = derive2 { name="openalexR"; version="1.2.2"; sha256="0f8kdw25428rw6rgcng0vy4paw08mqzlnk11p8c5gi9f7bx40vw6"; depends=[httr jsonlite progress tibble]; }; + openairmaps = derive2 { name="openairmaps"; version="0.8.1"; sha256="14jb8a3i5ywzfqlqgy6smcfrj7lrq4fzamvcwdp9za5cxk9yi8cj"; depends=[cli dplyr forcats ggmap ggplot2 ggtext leaflet lifecycle lubridate magrittr mgcv openair purrr rlang sf stringr tibble tidyr]; }; + openaistream = derive2 { name="openaistream"; version="0.1.9"; sha256="16g7l9z2473wwaai7ynl4d6b3cdwizida4kmjnbya3np8chw10kh"; depends=[curl httr2 iterators jsonlite R6]; }; + openalexR = derive2 { name="openalexR"; version="1.2.3"; sha256="1ww45blq54lq55ypassmanabnfs8lv2p72gh6qlmha45mnhkwh51"; depends=[httr jsonlite progress tibble]; }; openbankeR = derive2 { name="openbankeR"; version="0.1.1"; sha256="04jh3nnp53dzbk96dcz0xi67jqmp66mzbj81cy8mhhd2rl5ry9cj"; depends=[dplyr glue httpcode httr jsonlite magrittr tidyr]; }; openblender = derive2 { name="openblender"; version="0.5.81"; sha256="01akixxj04kgrxhv04icrivfpnipnpg9j62i3y19q3jkl9846lh1"; depends=[httr jsonlite]; }; opencage = derive2 { name="opencage"; version="0.2.2"; sha256="1sjkpp6cj6ivd68p6ql6vwgdvy0fwfkjv84wgwgb4i7f4mnxgnff"; depends=[crul dplyr jsonlite lifecycle memoise progress purrr ratelimitr rlang tibble tidyr withr]; }; opencpu = derive2 { name="opencpu"; version="2.2.11"; sha256="1hdvfbzc8xmv8hrmchad590f91s4vq1nq83wi2ffh4n7q6ixr03s"; depends=[brew curl evaluate httpuv jsonlite knitr mime openssl protolite rappdirs remotes rlang sys vctrs webutils zip]; }; - opencv = derive2 { name="opencv"; version="0.3.1"; sha256="1za5smc5c9zaqi5xwlpj53f990szhw9mqhh6qcmfnr1yddp43cgi"; depends=[magrittr Rcpp]; }; + opencv = derive2 { name="opencv"; version="0.4.0"; sha256="0bplljn5qpgb3yp3jlmr99vrffqr53q8hlznbzpmj78kn5f1j71y"; depends=[magrittr Rcpp]; }; opendatatoronto = derive2 { name="opendatatoronto"; version="0.1.5"; sha256="1fiviazs0ydxvmsqaayhwnxf4wl4sx1psn8i5mpis7218d9ihagy"; depends=[ckanr curl magrittr readxl sf tibble xml2]; }; opendotaR = derive2 { name="opendotaR"; version="0.1.4"; sha256="17cygsw3nkg6zincfrcdh1509rlz3n5zrv9wvv7mjngm61sn79nf"; depends=[dplyr jsonlite lubridate]; }; openeo = derive2 { name="openeo"; version="1.3.0"; sha256="002zrvrm417ix80vrqnl2wygqh0vjymfi5hl88v6ajfspp9r73qn"; depends=[base64enc htmltools httr2 IRdisplay jsonlite lubridate R6 rlang sf]; }; openintro = derive2 { name="openintro"; version="2.4.0"; sha256="1svvlhdnv8dvqwphsn83asfd5xzvvar2bz334aqndqx76dv9j88j"; depends=[airports cherryblossom ggplot2 readr rmarkdown tibble usdata]; }; - openmeteo = derive2 { name="openmeteo"; version="0.2.3"; sha256="0fzl1cb5pzdg5gs2fz60i04mkinrgvjclybgfyjz5zf8i86z9fgl"; depends=[dplyr httr testthat tibble tibblify tidyr yaml]; }; + openmeteo = derive2 { name="openmeteo"; version="0.2.4"; sha256="147zc2mn9ma6rkdz5czkmq8pp9slkvz44vf00mi64jkq2gp9kfpx"; depends=[dplyr httr testthat tibble tibblify tidyr yaml]; }; openmetrics = derive2 { name="openmetrics"; version="0.3.0"; sha256="0bcljsirlkxn0h87j2g2jb6spcik84h7nms06mcj40ckx188yr82"; depends=[R6]; }; opensensmapr = derive2 { name="opensensmapr"; version="0.6.0"; sha256="0inq86zrkax281wh5rj3pxjp3lgrhsqvma0p6kvizb5c7cwws5in"; depends=[digest dplyr httr lazyeval magrittr purrr readr]; }; openssl = derive2 { name="openssl"; version="2.1.1"; sha256="1p2bnr4z4vx3yqq5isqb3z4d9vg2isiz8i0h3vxdb5ramzwjd9zs"; depends=[askpass]; }; opentripplanner = derive2 { name="opentripplanner"; version="0.5.1"; sha256="04qf01jy675glwnxjf430z43c9hi5dxjv6g2h85ny778hzvhq087"; depends=[checkmate curl data_table geodist googlePolylines progressr purrr RcppSimdJson rjson sf sfheaders]; }; openxlsx = derive2 { name="openxlsx"; version="4.2.5.2"; sha256="0rwvzhk2brhbf1cdpg5jmwiwx5jhr9ybzvnhw0pg4bl3wpkqjw7f"; depends=[Rcpp stringi zip]; }; - openxlsx2 = derive2 { name="openxlsx2"; version="1.1"; sha256="07hlilx98ma0hms84pwcmz9hzga8kx5488lmizhzvlg6ldh7xfnl"; depends=[magrittr R6 Rcpp stringi zip]; }; + openxlsx2 = derive2 { name="openxlsx2"; version="1.2"; sha256="1hrrp4c2j3m6a5f97agfp4gv6675nd6mjrvxhj86hbw8jrqs4zb7"; depends=[magrittr R6 Rcpp stringi zip]; }; opera = derive2 { name="opera"; version="1.2.0"; sha256="09gh0c74y3n25f9p1rya8ybql5mfaqkcnr8i8wwwzfm67vqdfrnh"; depends=[alabama htmltools htmlwidgets pipeR rAmCharts Rcpp RcppEigen Rdpack]; }; operator_tools = derive2 { name="operator.tools"; version="1.6.3"; sha256="1v4dg7xhz24dnp0zxn815x1405ig64ibii6y40la1gvmzcc41dz5"; depends=[]; }; operators = derive2 { name="operators"; version="0.1-8"; sha256="0zgcv2q46qyqv4dhbd33s4044zjw38w8dqfpzs0c1lxjpkil3dnx"; depends=[]; }; @@ -14323,10 +14554,9 @@ in with self; { optR = derive2 { name="optR"; version="1.2.5"; sha256="0q7jf4m0gzm11izl5lff17pvr855smqmc6zzi1bc7m6h3z865l32"; depends=[]; }; optband = derive2 { name="optband"; version="0.2.2"; sha256="0mg6awg1vgnbqrbkf9vnyj5jfbakna0jsclhi0w3v1rh0rsd5jlp"; depends=[LambertW]; }; optbdmaeAT = derive2 { name="optbdmaeAT"; version="1.0.1"; sha256="1y1mvcyjihpj1wgjmifhmd10717wr1srp7h87azs4gfypgsiqchn"; depends=[igraph MASS Matrix]; }; - optbin = derive2 { name="optbin"; version="1.2"; sha256="08v8dn3jn75p1f04lc963gasyszjf57j7kajwpqv4w20lwjsw17w"; depends=[]; }; + optbin = derive2 { name="optbin"; version="1.3"; sha256="09pdmbvhwj7g13bqcql70x1c6l1islyasbhxcbqdf1cr7r6ylysz"; depends=[]; }; optedr = derive2 { name="optedr"; version="2.0.0"; sha256="17r0axfh7yjv5xj9060vi5vysnmi38pz5dsvm0fazfcpzzlxnld7"; depends=[cli crayon dplyr ggplot2 nleqslv purrr rlang shiny]; }; optextras = derive2 { name="optextras"; version="2019-12.4"; sha256="1sqkid6h13h8i8wzri26s828ycwlxlwpwxd85r8bw9h8hs1n602r"; depends=[numDeriv]; }; - optiSel = derive2 { name="optiSel"; version="2.0.7"; sha256="0rqwwc33rb4bp8j3m0lqrv8l539h6bbfhlj4gwa07xsdpvkyq4b5"; depends=[data_table doParallel ECOSolveR foreach kinship2 magic MASS Matrix nadiv optiSolve pedigree plyr pspline purrr quadprog Rcpp RcppArmadillo reshape2 stringr]; }; optiSolve = derive2 { name="optiSolve"; version="1.0"; sha256="0mhl5gdz3y3cs3p6v7z4n50na3sqj0w739gixcf4qgb1ppx0h1xa"; depends=[alabama cccp MASS Matrix nloptr plyr Rcpp shapes stringr]; }; optic = derive2 { name="optic"; version="1.0.1"; sha256="166ngas1zp1ln951n26kmyfj9jcpi2fm2g2yxs9vs4as6fl1yf2n"; depends=[did dplyr future_apply lmtest magrittr MASS purrr R6 rlang sandwich tidyr]; }; optical = derive2 { name="optical"; version="1.7.1"; sha256="1g400s4xbf9c8ss02qhm6q31sv7mrki4a9x1fdjjsyrgmclv9q2s"; depends=[]; }; @@ -14344,19 +14574,18 @@ in with self; { optimbase = derive2 { name="optimbase"; version="1.0-10"; sha256="0hdzbqr03jwy1vz3q9iw0kvii5p9g1vm4c3hs3jxszcj1rgrfm12"; depends=[Matrix]; }; optimg = derive2 { name="optimg"; version="0.1.2"; sha256="0fc7d3g5nxjjcbwh6v5m0ryhanw80v250j8m7j2gv4c9ql4g650d"; depends=[ucminf]; }; optimization = derive2 { name="optimization"; version="1.0-9"; sha256="1pg9a78hhm0h4pfagj13r1dmynv714knhw2dxhzhcvlgk9inpam8"; depends=[colorspace Rcpp]; }; - optimizeR = derive2 { name="optimizeR"; version="0.3.3"; sha256="10f5qncn4ngwcvwcw1p81spj9y0zi2w9alvh267v1l28m2pa68q4"; depends=[cli TestFunctions]; }; + optimizeR = derive2 { name="optimizeR"; version="1.0.1"; sha256="06ad7hcsmhhvv2w0yd8w1vqjg6ns95f81spixx2nw8gkwj6lfq1g"; depends=[checkmate cli oeli R6 TestFunctions]; }; optimos_prime = derive2 { name="optimos.prime"; version="0.1.2"; sha256="1a76gfzpd2s4gq15cd3frndak7wc6q3xqh9sllkk665031fx6z1h"; depends=[ggplot2 plotly tidyverse]; }; - optimr = derive2 { name="optimr"; version="2019-12.16"; sha256="003wz9r3xdi47ad22l4dkhp0dalknb2s9fp82yamjx7x1xbfvcbk"; depends=[numDeriv optextras Rcgmin Rvmmin setRNG]; }; optimsimplex = derive2 { name="optimsimplex"; version="1.0-8"; sha256="1q5hfbiq265q5im6wg78spaqsfj421hpzh8bz51zmi188h6xwnwr"; depends=[optimbase]; }; optimus = derive2 { name="optimus"; version="0.2.0"; sha256="01njyjfrm6kjwx2qq41c0hsgxzydnrmr3538cpbfdn5i0z5blgyx"; depends=[mvabund ordinal]; }; - optimx = derive2 { name="optimx"; version="2023-8.13"; sha256="00w8h450gs8vf0raghjg2818xzj4gz5jr3hwk9m9zc5k3rwmcf8n"; depends=[nloptr numDeriv pracma]; }; + optimx = derive2 { name="optimx"; version="2023-10.21"; sha256="1da4daxgk4kbq1n2mn72482c3j96wba0xf4mzffgasn20ib2swqd"; depends=[nloptr numDeriv pracma]; }; optinterv = derive2 { name="optinterv"; version="0.1.0"; sha256="1yvjb9fyqj3pfglfdwdq4kpw9i5g5i3klgpqb05xdnacbnpdxvmp"; depends=[boot distances Hmisc lattice pbapply rootSolve weights]; }; optional = derive2 { name="optional"; version="2.0.1"; sha256="1q7k9rsa7m3ag7mwx88101ksy0c01gk0xl0425jfkwm0d4g5pyy0"; depends=[magrittr]; }; options = derive2 { name="options"; version="0.0.2"; sha256="11x18vicg7g3hpjiyhn4hb20g7zccn1bj74q39sh5il3v0wpkbg9"; depends=[]; }; optionstrat = derive2 { name="optionstrat"; version="1.4.1"; sha256="0vidaf888zdls5yxy7637fqg6r39l3rxw9bhn16s4xmag7kawljv"; depends=[]; }; optiscale = derive2 { name="optiscale"; version="1.2.2"; sha256="1ay2lfk4isv0gir5diwxlx4ml5bv5qyqbwm34py85fp6bh92987r"; depends=[lattice]; }; optistock = derive2 { name="optistock"; version="0.0.2"; sha256="1wl637hgdhiyk56xv39bb8m4v6nnlqyy6vgkradf90k084m9q52p"; depends=[]; }; - optmatch = derive2 { name="optmatch"; version="0.10.6"; sha256="0d8xrq6b2dkr78dk25rikmsypfd2vsvv8y9pmsfv7gfzgxb62xib"; depends=[dplyr Rcpp rlemon tibble]; }; + optmatch = derive2 { name="optmatch"; version="0.10.7"; sha256="07bx6bs5kk9pv0a2nsvq5y4bq4z17sa5f54kpxpim476xd8w43rk"; depends=[dplyr Rcpp rlemon tibble]; }; optparse = derive2 { name="optparse"; version="1.7.3"; sha256="1v87db7fm494dwxvdsnl1m2kj84nplq7pkh0g41najhx0npy31v2"; depends=[getopt]; }; optpart = derive2 { name="optpart"; version="3.0-3"; sha256="18h659gbgzflq81lcchc058xjgljkmhpsjkh51ylygwrv1qjrz2i"; depends=[cluster labdsv MASS plotrix]; }; optrcdmaeAT = derive2 { name="optrcdmaeAT"; version="1.0.0"; sha256="16g4612mwyfsckn6l71fbrjnnjv4yvnac1cccbrn3k8jh07qgb1h"; depends=[igraph MASS Matrix]; }; @@ -14364,7 +14593,8 @@ in with self; { optweight = derive2 { name="optweight"; version="0.2.5"; sha256="1mfk9sp47flqq7i762wip5191j8m0q9kbyxs4a7f0pd76qwf67q2"; depends=[ggplot2 Matrix osqp]; }; opusminer = derive2 { name="opusminer"; version="0.1-1"; sha256="1vw6pbk1iiaxmfws95wmwf56p3afk10s5c3x9f0lliamckpyzkck"; depends=[arules Matrix Rcpp]; }; ora = derive2 { name="ora"; version="2.0-1"; sha256="0albxqma220rnrpfdq3z9cawr83q1a0zzczbbcy4nijjm4mswphy"; depends=[DBI ROracle]; }; - orca = derive2 { name="orca"; version="1.1-1"; sha256="1wd5nh2vh6j1rp78hbw17qipi67f0wimrbkiarak8f7k5pfiy1zn"; depends=[]; }; + orbweaver = derive2 { name="orbweaver"; version="0.0.3"; sha256="0lmxcjh621nsq5qrhg76h034dnzsybxs7r3sbqr91lifl2mpdnsd"; depends=[]; }; + orca = derive2 { name="orca"; version="1.1-2"; sha256="0nzm0i0ms2l4n10pgs1jg7mb9pd1k3pg7nvyd0w3ivq490g2py79"; depends=[]; }; orclus = derive2 { name="orclus"; version="0.2-6"; sha256="0d78mn2vl2yxlvdswyxkxp9zg59b8cvfksz9m56kddn79aps1ikl"; depends=[]; }; orcutt = derive2 { name="orcutt"; version="2.3"; sha256="0pj7pqzbcg4gp35nsz3avyawmx69dgj0l2w0x8ypw5qwl4zhmnyk"; depends=[lmtest]; }; ordDisp = derive2 { name="ordDisp"; version="2.1.1"; sha256="0906y98ydiadyqhz9ad2ssw1282a10c418k20vkbwzad2xip7grg"; depends=[VGAM]; }; @@ -14373,11 +14603,11 @@ in with self; { ordcrm = derive2 { name="ordcrm"; version="1.0.0"; sha256="1hy24s23l099b21w5j3p2f0748s8xmhxhslfp65fg7ycwda5qsyw"; depends=[rms]; }; ordering = derive2 { name="ordering"; version="0.7.0"; sha256="0sgwgcjg6sazmi11c9qvxfrzg671kcp18i2q20xbmbj4v3yqhwbh"; depends=[]; }; orderly = derive2 { name="orderly"; version="1.4.3"; sha256="0k7xk64schhw9jdbg50hlnf6gfhlgnv1n20rz3fga02z38441xkn"; depends=[crayon DBI digest docopt fs gert ids R6 RSQLite withr yaml zip]; }; - orders = derive2 { name="orders"; version="0.1.7"; sha256="1rn5pjfshinv4nqja9aw8cl3y33vgdd3xgn20q72h8gii5isrfps"; depends=[actuar gamlss_dist Newdistns VGAM]; }; + orders = derive2 { name="orders"; version="0.1.8"; sha256="05fq8mvqjvm4dir7zc7dxri3n6ar08afvrg49x8hbf920yqxkmq1"; depends=[actuar gamlss_dist Newdistns VGAM]; }; orderstats = derive2 { name="orderstats"; version="0.1.0"; sha256="0a3ga0cjryvbininspsx5wzc96s3fza06s3d5fhbllbixz0rap4a"; depends=[]; }; ordgam = derive2 { name="ordgam"; version="0.9.1"; sha256="0flldxv53qyiprq44670b4b98i791si3nmi983pgkzd8s39aa68l"; depends=[cubicBsplines marqLevAlg MASS Matrix mgcv numDeriv sn ucminf]; }; ordiBreadth = derive2 { name="ordiBreadth"; version="1.0"; sha256="04faqhas1p9lxhghd4xq07yq1nxv7ns18avhvkql7sy5a9g7bfs1"; depends=[vegan]; }; - ordinal = derive2 { name="ordinal"; version="2022.11-16"; sha256="14yld28vjmvxbwz6mapfri4vrj3nsf9p73fn2z80j6jkz8fsv22l"; depends=[MASS Matrix nlme numDeriv ucminf]; }; + ordinal = derive2 { name="ordinal"; version="2023.12-4"; sha256="18lzpmf36vvc3krk7jqz7naikhrcdyplj2z9y6xgzlnzhgcjln7m"; depends=[MASS Matrix nlme numDeriv ucminf]; }; ordinalClust = derive2 { name="ordinalClust"; version="1.3.5"; sha256="0hmqvhrmijgzanh08z5v82a07zl7xm69wl8zzj99fksahyrgxjdc"; depends=[BH Rcpp RcppArmadillo RcppProgress]; }; ordinalCont = derive2 { name="ordinalCont"; version="2.0.2"; sha256="1azwcr1si3b8dxf2y59d3rxw4msfq79khzg7zgqd0kbzyka4ygl8"; depends=[boot Deriv]; }; ordinalForest = derive2 { name="ordinalForest"; version="2.4-3"; sha256="06blmwmn42dv6sri3j3473arrql5rihdlp7kgh56b2w1j2wdqq7s"; depends=[combinat nnet Rcpp verification]; }; @@ -14388,7 +14618,7 @@ in with self; { ordinalgmifs = derive2 { name="ordinalgmifs"; version="1.0.8"; sha256="0c97c3zss34x9n8szr95z51qx8ix55mlrbqvg8dz128xpd3684rj"; depends=[survival]; }; ordinalpattern = derive2 { name="ordinalpattern"; version="0.2.3"; sha256="1xxii1lxbkip778wj92kicj4xlpriqa47b258bvmng2s4djkmg0y"; depends=[gtools mvtnorm]; }; ordr = derive2 { name="ordr"; version="0.1.1"; sha256="07nsl6mdm4dmyl8vsqzcpd2mihcxsm68gjx3v1dfqgjqmz477nvf"; depends=[dplyr generics ggplot2 ggrepel labeling magrittr purrr rlang scales stringr tibble tidyr tidyselect]; }; - ore = derive2 { name="ore"; version="1.7.3.1"; sha256="0hlmr4p0ldizdv46myyhlki10qkjdgs44jxp9y61zqcdw360dz95"; depends=[]; }; + ore = derive2 { name="ore"; version="1.7.4.1"; sha256="01ayvjyjbarmi7l2jwp7bp4m0k42zy8bvf9rbwynfwmm8mv6vx0j"; depends=[]; }; oreo = derive2 { name="oreo"; version="1.0"; sha256="1qzv6fjana5fx45msqasqfniiancsch6j8r1llh1xyg2wjhqdj23"; depends=[fftwtools ggplot2 gridExtra openxlsx pracma scales spectral]; }; ores = derive2 { name="ores"; version="0.3.2"; sha256="0xzc0d38z7h5ghab3kqsv0r2cl3888j7vn94p51xlwcbhnq10kip"; depends=[httr]; }; orf = derive2 { name="orf"; version="0.1.4"; sha256="1njcnya5f2wx50l7gyf53js16xj1y6pwgbghxq4nm4grf2ck3mz1"; depends=[ggplot2 ranger Rcpp xtable]; }; @@ -14415,6 +14645,7 @@ in with self; { osc = derive2 { name="osc"; version="1.0.5"; sha256="00a0ys5ni0hg5zxi0sr5ak3n4c252vhvd6gynnx1b0lqna7bz9qi"; depends=[raster]; }; oscar = derive2 { name="oscar"; version="1.2.1"; sha256="1khyl3y8rpyn0skn45wcl1saa713fh48fv6vh3hfgyf46j8ibgra"; depends=[hamlet Matrix pROC survival]; }; osd = derive2 { name="osd"; version="0.1"; sha256="1py9p15nrcydr8w9ilxkxabiz9zlqnls8xn9avjkxd8x6602jx6p"; depends=[JADE nnls]; }; + osdatahub = derive2 { name="osdatahub"; version="0.2.0"; sha256="00pk0c9v3r0kdgin4gg4hk3hhf0274pw283919pr9kg926nddc3r"; depends=[geojsonsf geos httr jsonlite]; }; osfr = derive2 { name="osfr"; version="0.2.9"; sha256="0gbkg6hlip2bkwifsgvnaimrmi1pamaxf8xv7g0yxw5wdf8zyy5c"; depends=[crul fs httr jsonlite memoise purrr rlang stringi tibble]; }; oshka = derive2 { name="oshka"; version="0.1.2"; sha256="02hglpq5lknq93zbcf219lhnhppzgygkhxqixb15f89rxf9fczgs"; depends=[]; }; oskeyring = derive2 { name="oskeyring"; version="0.1.6"; sha256="1fsgz4jln3nk53bxpmjpc7dcapc9j1wdqlrab169ymvrlzypgvqc"; depends=[]; }; @@ -14424,7 +14655,7 @@ in with self; { osqp = derive2 { name="osqp"; version="0.6.3.2"; sha256="0i1jh3fr8d45b7inq9s6iyqszhh18hps8jpzkm0hzgj2k8r3nm0q"; depends=[Matrix R6 Rcpp]; }; osrm = derive2 { name="osrm"; version="4.1.1"; sha256="05zvsmgrfg8143cma3xr2c758a7lbabsb53sxzw5xkc7z19amfyb"; depends=[curl googlePolylines mapiso RcppSimdJson sf]; }; osrmr = derive2 { name="osrmr"; version="0.1.36"; sha256="1vnf6g1d9fjckz9ay910nb9gr1km2adwk3b0k460mxvpr36izkh7"; depends=[assertthat bitops R_utils rjson stringr]; }; - otargen = derive2 { name="otargen"; version="1.0.0"; sha256="05h7nsgnb742rix6l4wnlyp87bs6baii6j69phdba5cjss5d6m8c"; depends=[cli dplyr ggiraphExtra ggplot2 ggrepel ghql janitor jsonlite magrittr rlang stringr tibble tidyr]; }; + otargen = derive2 { name="otargen"; version="1.1.0"; sha256="0sikcvg1v3sac72fxkd1vxx2rhqi20skw28nll4s8p44k4kpva2j"; depends=[cli dplyr ggiraphExtra ggplot2 ggrepel ghql janitor jsonlite magrittr rlang stringr tibble tidyr]; }; otinference = derive2 { name="otinference"; version="0.1.0"; sha256="1l75jjnkyk8yzaw9zyk45jq9ys304i6pzm2xd5apxrb1jk75a3li"; depends=[MASS Rglpk sm transport]; }; otp = derive2 { name="otp"; version="0.1.0"; sha256="0l0r56kn8jmjxhzz646fimi91blpgpynrrgfd03rh3dbifd5xhdz"; depends=[base64url openssl R6]; }; otpr = derive2 { name="otpr"; version="0.5.1"; sha256="1wh5rmwwwdf1wkb18ayx6zcnhwf80zziznk64jg1974g8crgdxsb"; depends=[checkmate dplyr geojsonsf httr janitor jsonlite rlang rrapply sf urltools]; }; @@ -14443,16 +14674,16 @@ in with self; { outerbase = derive2 { name="outerbase"; version="0.1.0"; sha256="18c73vp0fjcgg4vhf9bfxm21j8s85cmicqi5j76q0wm800qaqvm9"; depends=[Rcpp RcppArmadillo]; }; outlierensembles = derive2 { name="outlierensembles"; version="0.1.0"; sha256="0m2iaf3rbpwvyrjz6qglbrinmz676hnbqqm6vc38zb3k3cjcllaq"; depends=[airt apcluster EstCRM psych]; }; outliers = derive2 { name="outliers"; version="0.15"; sha256="1yrmwvjjb0a6sbx940k9svf23cykcxz8rrwcgyic7lpgzbrdfcfc"; depends=[]; }; - outliertree = derive2 { name="outliertree"; version="1.8.1-1"; sha256="0hhhnhnz2avl4i2jv509yfi55xp69lannyfkadn9ipknyb1bbz1y"; depends=[Rcereal Rcpp]; }; + outliertree = derive2 { name="outliertree"; version="1.8.2"; sha256="020vb9j9layf8ml1mvnzzsjz6sjsj5wc4hn976ksch83yrv0mc0j"; depends=[Rcereal Rcpp]; }; outreg = derive2 { name="outreg"; version="0.2.2"; sha256="04f1x7mxq4swbd7bfwjjgx4838jm6qj4piaighmhcscwrdkxa1cp"; depends=[magrittr reshape2 sandwich stringr tidyr]; }; overdisp = derive2 { name="overdisp"; version="0.1.2"; sha256="155zkxpv0jqy21winp3r17vnrd6xh2a92glha4d9i2vi541d9kix"; depends=[]; }; - overlap = derive2 { name="overlap"; version="0.3.4"; sha256="1arxprhz035ab78ks88n6scwnlwmnb97mlac5gsx90ipb6gkgcyk"; depends=[]; }; overlapping = derive2 { name="overlapping"; version="2.1"; sha256="1dq2xsinl5rh8sf2bayv6xs7x8i0d54c405p8l82ji3xrkz49clf"; depends=[ggplot2 testthat]; }; overlapptest = derive2 { name="overlapptest"; version="1.3"; sha256="0qvsiwh76isiz3rcrizahp6p35lscrjijidnjwwwpmc0r9pm7xzd"; depends=[spatstat_geom]; }; overture = derive2 { name="overture"; version="0.4-0"; sha256="1s16x5kn0apb0w1f7hqzcsqvw3x621y5n6yr1qn7yb7431pdw3cz"; depends=[bigmemory]; }; overviewR = derive2 { name="overviewR"; version="0.0.13"; sha256="13g2qjd9421nfmabhs2xx8h393id9c9x1h547r953q7aabjmkr89"; depends=[data_table dplyr ggplot2 ggrepel ggvenn rlang tibble tidyr]; }; owd = derive2 { name="owd"; version="1.0.6"; sha256="08f1zzlnkfdzm5rlw14qm6yvn68j2yas21zjsy31pc59rh3lzkyh"; depends=[]; }; owdbr = derive2 { name="owdbr"; version="1.0.1.1"; sha256="0q4654zr5aw04sssy7127vafry72b7p3d8i44fqvqg3055awin0i"; depends=[data_table dplyr httr jsonlite magrittr tibble]; }; + owidR = derive2 { name="owidR"; version="1.4.2"; sha256="07l2398xlm2w8pi2az11wvahiq2sy7wpidmvcwplxb10c8pj29gy"; depends=[curl data_table httr jsonlite magrittr purrr rvest xml2]; }; owmr = derive2 { name="owmr"; version="0.8.2"; sha256="0qlb5aw6n06yf8y2gd2fjp8kp3w0xgqh3fka7rxqndgvaqmin1a6"; depends=[httr jsonlite magrittr plyr tibble tidyr]; }; ows4R = derive2 { name="ows4R"; version="0.3-6"; sha256="1nzvvkixgcqpz0hxzb4fyby5c3rlh0ac3i5q00wz3w3bhhdzrdcb"; depends=[geometa httr keyring openssl R6 sf terra XML]; }; ox = derive2 { name="ox"; version="0.1.0"; sha256="0j0va301bmppvmk6paqaqqaw85h8yf92i3pz7i59f2j8q9im82rx"; depends=[]; }; @@ -14470,9 +14701,9 @@ in with self; { pGRN = derive2 { name="pGRN"; version="0.3.5"; sha256="1sy5nhwcn516q4pjlg96qqaqvs1ig7ixz4r54n9njkf5z92wnhfw"; depends=[bigmemory doParallel dtw foreach future ggplot2 ggraph igraph lmtest proxy tidygraph visNetwork]; }; pKSEA = derive2 { name="pKSEA"; version="0.0.1"; sha256="1k9javxbhx28hf5k3i66ggqwlws2w9qwp01g8f7jmyp92pxr3qqd"; depends=[]; }; pRF = derive2 { name="pRF"; version="1.2"; sha256="17srabk7mam16rdzc5g9ggdrhjjk8wibny40gxvgzkv7qgq7m80x"; depends=[dplyr ggplot2 multtest permute randomForest reshape2]; }; - pROC = derive2 { name="pROC"; version="1.18.4"; sha256="0lqar1lbm461in4jb9rkdnpccl8lshrhig2qxr892m91mdxym46m"; depends=[plyr Rcpp]; }; + pROC = derive2 { name="pROC"; version="1.18.5"; sha256="129cnh3kh9sr42nc7n9f14kr9svi3501834x40njynnzlr0wi4sm"; depends=[plyr Rcpp]; }; pRSR = derive2 { name="pRSR"; version="3.1.1"; sha256="1irx95b7cwvx3gpn9brjjn4k947m8frz542r18nilc9f1159mb3s"; depends=[]; }; - pRecipe = derive2 { name="pRecipe"; version="3.0.1-1"; sha256="066rkdzrkh9s714x1fg5rmjikkwmna2d42fzlzgk1xjnn4ypsngh"; depends=[data_table doParallel foreach ggplot2 ggpubr lubridate magrittr ncdf4 openair raster scales sf sp]; }; + pRecipe = derive2 { name="pRecipe"; version="3.0.1-2"; sha256="13i8mk7d5zxmym13hbgx60085jcx4rnp9qk2yypbra587p66mdg2"; depends=[data_table doParallel foreach ggplot2 ggpubr lubridate magrittr ncdf4 openair raster scales sf sp]; }; pRepDesigns = derive2 { name="pRepDesigns"; version="1.1.0"; sha256="1bsdgd6zaywr5bh96khjinp5qrv72ibv9y60v63rqzpkdixdzp5z"; depends=[]; }; pTITAN2 = derive2 { name="pTITAN2"; version="1.0.2"; sha256="1mwx7k8ql4l572xvwb5gns9n4kqk779wwm4sg7nbgzz8xvcdh665"; depends=[data_table]; }; pa = derive2 { name="pa"; version="1.2-4"; sha256="0rjq0b68qh5ayn5nd174bw6h7d707fy4kli1zi74vj4yc51z0las"; depends=[ggplot2]; }; @@ -14481,7 +14712,7 @@ in with self; { packHV = derive2 { name="packHV"; version="2.2"; sha256="0bj7zhlz2283y1hfdqdn7xil4wscwri1f5hszarwjwczx4n5sv81"; depends=[survival WriteXLS]; }; packMBPLSDA = derive2 { name="packMBPLSDA"; version="0.9.0"; sha256="1d9plb88d4hic6881ibij888ic3p65d0ijlsyxcghi93ag3wsfj3"; depends=[ade4 doParallel FactoMineR foreach MASS pROC]; }; packageDiff = derive2 { name="packageDiff"; version="0.1"; sha256="0qxgx2ac0x7p9j9clj7hgjahf7xwzcjkcw0d2n6w0r9c4g0mw9w2"; depends=[diffr htmlwidgets]; }; - packageRank = derive2 { name="packageRank"; version="0.8.2"; sha256="1gg2qv9g5lr6sfc2ds4mnr95mw39idvsjhf8afsv2k2r73hb2aya"; depends=[cranlogs curl data_table ggplot2 ISOcodes memoise pkgsearch R_utils RCurl rversions sugrrants]; }; + packageRank = derive2 { name="packageRank"; version="0.8.3"; sha256="04hr4ygpb4wxairlsr4z4knqs5797jspj2mpisd2ci233b6k4y0s"; depends=[cranlogs curl data_table ggplot2 ISOcodes memoise pkgsearch R_utils RCurl rversions sugrrants]; }; packagefinder = derive2 { name="packagefinder"; version="0.3.5"; sha256="1fxv6q6pla3yfr32z6j5g4f0c0f1f9gsyn4w8bp23692lfpip721"; depends=[clipr crayon formattable htmlTable httr jsonlite lubridate pander reactable shiny shinybusy shinyjs stringr textutils tidyr]; }; packagepal = derive2 { name="packagepal"; version="0.1.0"; sha256="0l49qfxdf54m07dpbj3gb3safh4nbc5hz1vgh4dyqxnkrvmh49xl"; depends=[available cli usethis]; }; packager = derive2 { name="packager"; version="1.15.2"; sha256="0kvlc0cn3v1wpffh4hn29q8jgfxxg4pcxnfnnhykbx13wilrvrph"; depends=[callr checkmate codetools crayon cyclocomp desc fakemake fritools fs gert httr pkgbuild pkgload rcmdcheck remotes rhub rprojroot tinytest whisker whoami]; }; @@ -14500,7 +14731,6 @@ in with self; { pagedown = derive2 { name="pagedown"; version="0.20"; sha256="1900694r5l289y9yn176hbngiyk26jrslshqf5saq8zdxa67ad0x"; depends=[bookdown htmltools httpuv jsonlite later processx rmarkdown servr websocket xfun]; }; pagemap = derive2 { name="pagemap"; version="0.1.3"; sha256="1rwspbk7xmp27iadrd1471a7z71qyzlb0vnkw4ssjk7wi8q48fnj"; depends=[htmlwidgets]; }; pagenum = derive2 { name="pagenum"; version="1.2"; sha256="0nid26wmrm76ifxqpqqry232q4alf80i7df1rg237qil8asx06k1"; depends=[]; }; - pageviews = derive2 { name="pageviews"; version="0.5.0"; sha256="1fhlm2y288wx625y0glxybjb0xv9sqvvln35jqlwqq38h3grcpqd"; depends=[curl httr jsonlite]; }; pagoda2 = derive2 { name="pagoda2"; version="1.0.11"; sha256="13x2l7hcvd6975921c5hba8hm2qijkslviszfizah8wxynhbayy1"; depends=[dendsort drat fastcluster igraph irlba magrittr MASS Matrix mgcv N2R plyr R_utils R6 Rcpp RcppArmadillo RcppEigen RcppProgress rjson rlang RMTstat Rook Rtsne sccore urltools]; }; pagoo = derive2 { name="pagoo"; version="0.3.17"; sha256="0scf40vyw7lh5jh4p28894fa05nfl8n71g55w9bs9gbkszmn792k"; depends=[BiocGenerics Biostrings dendextend DT GenomicRanges ggfortify ggplot2 heatmaply magrittr plotly R6 reshape2 S4Vectors shiny shinydashboard shinyWidgets vegan]; }; painbow = derive2 { name="painbow"; version="1.0.1"; sha256="10c8spknh7sqa4vl0q4bjdwd03nl4qk28hj2qa9sbyb1ryc7p4j9"; depends=[ggplot2]; }; @@ -14510,7 +14740,7 @@ in with self; { pairsD3 = derive2 { name="pairsD3"; version="0.1.3"; sha256="1w1i9d5pls07zs95ikfzmdm3dr6yw3dy6k1rbkhfqb5g2y9g82zr"; depends=[htmlwidgets shiny]; }; pairwise = derive2 { name="pairwise"; version="0.6.1-0"; sha256="03dvpyr0hdz5a4wdim791m69825q762pwahlv3vwlnqas7niw3mf"; depends=[]; }; pairwiseCI = derive2 { name="pairwiseCI"; version="0.1-27"; sha256="0yp9nibdrsddjqq6vdlfbpvmfgm209h99b6qqqd6wgfzng327822"; depends=[boot coin MASS MCPAN mcprofile]; }; - pak = derive2 { name="pak"; version="0.6.0"; sha256="0syp0ci3ip9wq3wrlcwxj5vj2madhazgvv6q362flvk28djml1zd"; depends=[]; }; + pak = derive2 { name="pak"; version="0.7.1"; sha256="0r8rf4a6m3zx880s3brn7mygz42cl6pc040fbfhnwwxdrq2hdrz7"; depends=[]; }; palaeoSig = derive2 { name="palaeoSig"; version="2.1-3"; sha256="121akb42lqzp2vvfj6kjlaxsivxd71r7vnwyg6pcymkin94r8c3k"; depends=[assertr dplyr forcats ggplot2 ggrepel magrittr MASS mgcv purrr rioja rlang TeachingDemos tibble tidyr vegan]; }; palaeoverse = derive2 { name="palaeoverse"; version="1.2.1"; sha256="0jvc6gamlzvam3r2iwgjz02hpj47ya7vacvq2mpqbgc6sbnjmi7k"; depends=[ape curl geosphere h3jsr httr pbapply sf stringdist]; }; palasso = derive2 { name="palasso"; version="0.0.8"; sha256="0cgxfzhp394c8xprc2k0qx9c274bbp0cpazk7xilfrgcgk08156i"; depends=[glmnet Matrix survival]; }; @@ -14518,7 +14748,6 @@ in with self; { paleoTS = derive2 { name="paleoTS"; version="0.5.3"; sha256="1hpgyjnviw9gzy21rsa4vqkiyfpim5y70yrbjyq5z3ifanszggi5"; depends=[doParallel foreach mnormt]; }; paleobuddy = derive2 { name="paleobuddy"; version="1.0.0"; sha256="0kaq6vvzw5h0fpvggmvf6v2zg6a06kxcyajv1krzx0p9482nwyzi"; depends=[]; }; paleomorph = derive2 { name="paleomorph"; version="0.1.4"; sha256="05l55miahkmj8ikq8qz20y6kgxvxmdf04kji898i7fp8qyj4vfpa"; depends=[]; }; - paleopop = derive2 { name="paleopop"; version="2.1.5"; sha256="1mq7skw5k3b9gc2jkjsdq96ih3qwywwdsq1948101cl0ryh3aadn"; depends=[poems R6 sf trend]; }; paleotree = derive2 { name="paleotree"; version="3.4.5"; sha256="09fi0fq0xpxa4d3k7fhl6rvfc302gzmjrxm979j30ixpa8rypp64"; depends=[ape jsonlite phangorn phytools png RCurl]; }; paletteer = derive2 { name="paletteer"; version="1.5.0"; sha256="1mm0k651356cjasv7wibscw82m1k8mwpp4xafpv66dsq24h28ikl"; depends=[prismatic rematch2 rlang rstudioapi]; }; paletteknife = derive2 { name="paletteknife"; version="0.4.2"; sha256="1m86xzx4qa3hlcp9pqmzd7n9js4nq2xap3lpsjxjqm0w3xsvb65s"; depends=[]; }; @@ -14529,7 +14758,7 @@ in with self; { palm = derive2 { name="palm"; version="1.1.5"; sha256="108w8vsb41j1kwvymjcf5123xi8qiprcpiqynlvvfk1bp24jaz45"; depends=[gsl minqa mvtnorm R6 Rcpp]; }; palmerpenguins = derive2 { name="palmerpenguins"; version="0.1.1"; sha256="1d1h3bfx750is4qqj4w00rcigk9rrdy69bvd5bgqz5y7ls5x8h1a"; depends=[]; }; palmtree = derive2 { name="palmtree"; version="0.9-1"; sha256="06438wla5zm2s8vgip15lfy5gmhwh3wkiak8hsylc8zzkvn698cn"; depends=[Formula partykit]; }; - palr = derive2 { name="palr"; version="0.3.0"; sha256="0xb2k4vhlczg4ys1haybrlcpmwhpbfivqg8cfj6mbiir452mb507"; depends=[]; }; + palr = derive2 { name="palr"; version="0.4.0"; sha256="1day74mapad08x95vpdd56qg74yizfna6rdap3y7rwbk3yk3spf6"; depends=[]; }; pals = derive2 { name="pals"; version="1.8"; sha256="0z6lkvkq7b3wsxvizljf08sjqrdcj33p5kdx6074pc5jv36dylhb"; depends=[colorspace dichromat mapproj maps]; }; pamm = derive2 { name="pamm"; version="1.122"; sha256="0jd0v3vlq1hrhlyhw008h1jlx9f2nd72ngpyn6km0ay04pnbhkvs"; depends=[lattice lme4 lmerTest mvtnorm]; }; pammtools = derive2 { name="pammtools"; version="0.5.92"; sha256="00g4ffzwj4rc2nl507yzh5zj6pqjksw0igw23m26vxqsa8qdkyfc"; depends=[checkmate dplyr Formula ggplot2 lazyeval magrittr mgcv mvtnorm pec purrr rlang survival tibble tidyr vctrs]; }; @@ -14548,7 +14777,7 @@ in with self; { panelsummary = derive2 { name="panelsummary"; version="0.1.2.1"; sha256="00rscxkblqkhyx2kdnl78hy82y9bjwdzhiia7bdx9qbjf0g2qjkl"; depends=[dplyr fixest kableExtra modelsummary rlang stringr tidyselect]; }; panelvar = derive2 { name="panelvar"; version="0.5.5"; sha256="15bks8aqy29rslgbjp4w8xw7w2mcpgcc77bya7a9jcs5715j9xdb"; depends=[ggplot2 knitr MASS Matrix matrixcalc progress reshape2 texreg]; }; pangaear = derive2 { name="pangaear"; version="1.1.0"; sha256="1x1dbf7jahzc5s4gs0hn6xpw35xxbgp61aym50k384pavsdm9xgw"; depends=[crul hoardr jsonlite oai png tibble xml2]; }; - panstarrs = derive2 { name="panstarrs"; version="0.2.0"; sha256="0pnzbw1m1vgy40f7m2wbym9rgdvaa2i9fqkadfnpj4z428b50627"; depends=[bit64 checkmate curl data_table httr jsonlite]; }; + panstarrs = derive2 { name="panstarrs"; version="0.2.1"; sha256="07i7v8rjvzw3qxidvjdh73q8v8rfl8xs9zg1nzphz663flqhl6sd"; depends=[bit64 checkmate curl data_table httr jsonlite]; }; papaja = derive2 { name="papaja"; version="0.1.2"; sha256="08ydk9fws5x37q120cdjdx1dsib0y2g9bp826vxzxcaymlwx3dl7"; depends=[bookdown broom glue knitr rmarkdown rmdfiltr tinylabels yaml zip]; }; papci = derive2 { name="papci"; version="0.1.0"; sha256="0ma1pfwgmj6qcg23yzhbnqip4qnxhsmfnvrgrr3ln65q5plmvh58"; depends=[binom dplyr DT Hmisc PropCIs ratesci readxl shiny shinythemes tidyverse]; }; papeR = derive2 { name="papeR"; version="1.0-5"; sha256="095qfgv6h3sl5p69gm1v0qh9axap8gq2a9a3v95688fia2ppym4x"; depends=[car gmodels xtable]; }; @@ -14564,7 +14793,7 @@ in with self; { parallelly = derive2 { name="parallelly"; version="1.36.0"; sha256="123w89hmd7fn7lmdsl044npidvf7472h1ascvf7swjllan8s5h5r"; depends=[]; }; parallelpam = derive2 { name="parallelpam"; version="1.4"; sha256="0iv11jqr9040rnw7hkfdj4vq4s7lhzz6as7f0zcy6jm36b3hllh2"; depends=[memuse Rcpp]; }; paramGUI = derive2 { name="paramGUI"; version="2.2.0"; sha256="16z7fbrykyfysiqfrj00ks567wwrz2mpcwx75crbg45spdw0dck6"; depends=[fields shiny shinydashboard TIMP]; }; - parameters = derive2 { name="parameters"; version="0.21.2"; sha256="05ryyyibnm69hq1xa84r9n2gr1s1ifds70z4awmib2ch62098m43"; depends=[bayestestR datawizard insight]; }; + parameters = derive2 { name="parameters"; version="0.21.3"; sha256="091zpyq37v7xjicj4h4r4fqhrrc7d3hicgbdznsjn85sw4d7q595"; depends=[bayestestR datawizard insight]; }; paramhetero = derive2 { name="paramhetero"; version="1.0.0"; sha256="1zkwzmh3igkwfq87v3rmp3axfspl20qn4qmpyqql6ain564yyabw"; depends=[ggplot2 MASS]; }; paramlink = derive2 { name="paramlink"; version="1.1-5"; sha256="0a21cy8q3zv96zdq5q2hfkb2ga1fham00in7wfyyd9wpck9gp009"; depends=[assertthat kinship2 maxLik]; }; paramlink2 = derive2 { name="paramlink2"; version="1.0.4"; sha256="1dw6z49yd7g89hmnzpb5m0w8fz56iwwf7zr01kji0ss9p9vnr9pg"; depends=[pedprobr pedtools]; }; @@ -14572,6 +14801,7 @@ in with self; { paramsim = derive2 { name="paramsim"; version="0.1.0"; sha256="1a227s1xglcc1skpsmwmmwr04mql73plc557sp8bl8444fhjz228"; depends=[doParallel foreach forecast future tibble]; }; paramtest = derive2 { name="paramtest"; version="0.1.0"; sha256="0yn1s1qkgby8x0qn7cy1zhxzc0wyi7bm30pkvijhn5h5afjpylsy"; depends=[boot]; }; paran = derive2 { name="paran"; version="1.5.2"; sha256="0d9la83mxfpfgdfrqa40ck5fcp3j2b70d8c8nl9wmdsgvgqrl23s"; depends=[MASS]; }; + parcats = derive2 { name="parcats"; version="0.0.5"; sha256="1imlifi6zdyv1wnvasw8n7cxwq06hj6rr1g2xc1d8j2ic3dbk4ig"; depends=[dplyr easyalluvial forcats htmlwidgets magrittr purrr stringr tibble tidyr]; }; parfm = derive2 { name="parfm"; version="2.7.7"; sha256="12kcvdpmp99lqgr1775xqjkcn3s5agng1hwhjq2sa3bgrjgmhsh5"; depends=[msm optimx sn survival]; }; parglm = derive2 { name="parglm"; version="0.1.7"; sha256="11knspjg0s7x8c5dqrkdkr33af39rhyggs0s0dxv726zfmg1ldy3"; depends=[Matrix Rcpp RcppArmadillo]; }; parlitools = derive2 { name="parlitools"; version="0.4.1"; sha256="05xii25acmbdbhrkwgw812352vhxqpp5m8qbl346bp6v74ixi8aj"; depends=[dplyr hansard mnis readr sf snakecase stringi]; }; @@ -14581,7 +14811,7 @@ in with self; { paropt = derive2 { name="paropt"; version="0.3.2"; sha256="0awy0v98s1v0rx7k96zq1prgfvn9jmwnha4082fjx626g7zakwj6"; depends=[ast2ast dfdr Rcpp RcppArmadillo RcppThread rlang]; }; parqr = derive2 { name="parqr"; version="0.1.0"; sha256="11956dvv46sgpmbv429c24wxdhfqvc07jxc1i4yymyz1l8wgr3yb"; depends=[arrow magrittr purrr]; }; parquetize = derive2 { name="parquetize"; version="0.5.6.1"; sha256="0wnq5naq50g159ii7s33v5yiaykmgcvbc6d6f8fgng4kbpkmc569"; depends=[arrow cli curl DBI dplyr fst glue haven jsonlite lifecycle readr RSQLite tidyselect]; }; - parseRPDR = derive2 { name="parseRPDR"; version="1.0.1"; sha256="14h56y7x38ll63rq4x6grws5ddcbf3rgksfpv95dxgbh25bx5rqr"; depends=[data_table doParallel foreach readr stringr]; }; + parseRPDR = derive2 { name="parseRPDR"; version="1.1.0"; sha256="0jbph3sjhp0qa0gk9vixr2bswcmkjbwz142nplzlsym9x9j02626"; depends=[data_table doFuture doParallel foreach future parallelly progressr readr stringr]; }; parsec = derive2 { name="parsec"; version="1.2.7"; sha256="0k6w4nd37yz9jlzwv0bkv90v72y5bjz7rhk8gjpbl6ym63brxps6"; depends=[igraph netrankr]; }; parsedate = derive2 { name="parsedate"; version="1.3.1"; sha256="1cfinqlbchmkhkgmdwiy3mnxb17lp02jfk2gpw56hq9vh6wimhqz"; depends=[]; }; parsel = derive2 { name="parsel"; version="0.3.0"; sha256="0d2sviaq94v5szd2qq1kdpirp3zyrx6r3kyins9xyfma9026770x"; depends=[lubridate purrr rlang RSelenium]; }; @@ -14600,7 +14830,7 @@ in with self; { partools = derive2 { name="partools"; version="1.1.6"; sha256="0w7p88y4ab4v14k16k95cyb5f3yl2g6ban11775rmi2h9xqkfxk8"; depends=[data_table pdist regtools]; }; partsm = derive2 { name="partsm"; version="1.1-3"; sha256="17md3j41knscllckiqnvkqvf2v0fgsig101vgg6z5ic1yzvzfxgs"; depends=[]; }; parttime = derive2 { name="parttime"; version="0.1.1"; sha256="0xmxbvar4xazhnzmq9fdpyczsywjjc9dif350h9y77ydrj5i5xcz"; depends=[crayon lubridate pillar vctrs]; }; - party = derive2 { name="party"; version="1.3-13"; sha256="0yvyi4djhwa3mln2jlmg39lw5s2syz7jjfdby3nb3war1izmxw6y"; depends=[coin modeltools mvtnorm sandwich strucchange survival zoo]; }; + party = derive2 { name="party"; version="1.3-14"; sha256="0rq88zd8bqqqavlnmijf2j53livpr4pkmxlxhf5acsl2jxf9fc5w"; depends=[coin modeltools mvtnorm sandwich strucchange survival zoo]; }; partykit = derive2 { name="partykit"; version="1.2-20"; sha256="1np0sa7fx7wvwxbpk5lpgbdpz0xwcvppq0sc52nifx1dxnirll33"; depends=[Formula inum libcoin mvtnorm rpart survival]; }; parzer = derive2 { name="parzer"; version="0.4.1"; sha256="0v97cfjkggkdhv8gc0ffgbijgwxzpz7n44z7gsmkvggjj3wsxvpr"; depends=[Rcpp withr]; }; pasadr = derive2 { name="pasadr"; version="1.0"; sha256="0gc44jbqn96bn7f6xjmszz5lgsby24sxziixvhbkh5lgs4zap8i2"; depends=[pracma scales]; }; @@ -14608,25 +14838,25 @@ in with self; { passport = derive2 { name="passport"; version="0.3.0"; sha256="176pkc7x76339bawdwywdcmiynzzlrwr91fgf5q0rq7asd9nc7d1"; depends=[]; }; passt = derive2 { name="passt"; version="0.1.3"; sha256="0yphnw38wwv303lkbfj2y3fwfjnd8l7gyi60c7xaj6qwy4y5ww8k"; depends=[dplyr magrittr rlang tidyr]; }; password = derive2 { name="password"; version="1.0-0"; sha256="1ijzqdw54l8wvpy6ys28njvhplzjxzzi5i9y41vjnrr88n13977v"; depends=[]; }; - pastclim = derive2 { name="pastclim"; version="1.2.4"; sha256="0izfnafqxn874xbb6phybb8l5hpcpzhnrhp0dvmmfqhmf68z5r7d"; depends=[curl ncdf4 terra]; }; + pastclim = derive2 { name="pastclim"; version="2.0.0"; sha256="00zkf6flv4f5ljn0difpa8j3n221gvflsjnfdhfjbxnnw80qbyrp"; depends=[curl lubridate ncdf4 terra]; }; pasteAsComment = derive2 { name="pasteAsComment"; version="0.2.1"; sha256="165wsvgnrsbx9lh6bmffzyhdfhviap4vl556sbgr8f45lqcgsh69"; depends=[clipr rstudioapi]; }; pastecs = derive2 { name="pastecs"; version="1.3.21"; sha256="0z4dic94ar646w7zc2ggi5hgvf2qnznsani94c5pyql8zspz47lc"; depends=[boot]; }; patchDVI = derive2 { name="patchDVI"; version="1.11.0"; sha256="1cxgbrwb2qz39b9q1afz2i1pbnqyyi0hz8zc6j1i0llayyd6pgxk"; depends=[RmdConcord]; }; patchSynctex = derive2 { name="patchSynctex"; version="0.1-4"; sha256="1li3kw7a77sx6dss8pnxzb0p0sdy1kfm1zdnmhhj043zihrryd5p"; depends=[stringr]; }; - patchwork = derive2 { name="patchwork"; version="1.1.3"; sha256="07npkbalfl2d9aix02m2srxgmd8ymar6v0x65ighg3nq9d7l4xp9"; depends=[cli ggplot2 gtable rlang]; }; + patchwork = derive2 { name="patchwork"; version="1.2.0"; sha256="18b83gsv8idi5d062m9dvb46r7kxda97sa72pzllshhcaq9ylcfc"; depends=[cli ggplot2 gtable rlang]; }; patentr = derive2 { name="patentr"; version="0.1.4"; sha256="14jxqaq306mpppzz14f0qw1d0brrrkcs121h5fdiskvly3vjvs1j"; depends=[dplyr lubridate magrittr progress Rcpp rlang xml2]; }; patentsview = derive2 { name="patentsview"; version="0.3.0"; sha256="1ysqarmqqbw7zy1c3nfa08i6byima31pmcvv60qz9qjpyd2np0fn"; depends=[httr jsonlite]; }; path_chain = derive2 { name="path.chain"; version="0.2.0"; sha256="1p28mcar4krgvkgn02xrlwcpzchnppn2l2k2iwh511c3qrfpy653"; depends=[logger rlang stringi]; }; pathdiagram = derive2 { name="pathdiagram"; version="0.1.9.1"; sha256="018frv1n3x0bf1682jibnm5k2dlkg85xa9mps28l22a0z8bplbv5"; depends=[shape]; }; pathfindR = derive2 { name="pathfindR"; version="2.3.0"; sha256="06r8cxgp1bypvls5g7q56kr18in6z878givwn5daz44qhl84zz77"; depends=[AnnotationDbi DBI doParallel foreach fpc ggplot2 ggraph ggupset igraph KEGGgraph KEGGREST knitr magick msigdbr org_Hs_eg_db pathfindR_data R_utils rmarkdown]; }; pathfindR_data = derive2 { name="pathfindR.data"; version="2.0.0"; sha256="17gq9na4d6ls0dkvy4v1gjg29v7jm7ms9k83c2p6q2q1273ahxpb"; depends=[]; }; + pathling = derive2 { name="pathling"; version="6.4.2"; sha256="1i60b3caa1fn36gb04wwmr043pmxr234xhfy5m07z891andx90jj"; depends=[rlang sparklyr]; }; pathlit = derive2 { name="pathlit"; version="0.1.0"; sha256="0harvldkhq2c1wb9i4n72w1s3frhjzyn4cjpwk1n350zg12kh9gz"; depends=[httr jsonlite testthat timeSeries usethis]; }; - pathmapping = derive2 { name="pathmapping"; version="1.0.2"; sha256="0kx4wxf6lhi58sif8fzr5w4wa0i5253fq4v0ynp721fv1hkvmhvz"; depends=[]; }; pathmodelfit = derive2 { name="pathmodelfit"; version="1.0.5"; sha256="1nxcnmz9r99znqmwibvvix7h3acp22cs6wp1jmp21p862ncabll8"; depends=[lavaan]; }; paths = derive2 { name="paths"; version="0.1.1"; sha256="19fl54r2myb9ky8ffnx71xw23a8dlg15sj9v36xcpv79z61ryws9"; depends=[BART boot gbm ggplot2 metR pryr tidyr twang]; }; pathviewr = derive2 { name="pathviewr"; version="1.1.7"; sha256="0n3jv5zzwb7579ymv8s6vr7nzrc3gz5bi30yf6qvqixr8j0k4ggr"; depends=[cowplot data_table dplyr fANCOVA ggplot2 lubridate magrittr purrr R_matlab stringr tibble tidyr tidyselect]; }; pathwayTMB = derive2 { name="pathwayTMB"; version="0.1.3"; sha256="1zrs7l9vifrsixk20p0nxs6s8kadc3l3mj933s7ribaby2fb0r8m"; depends=[BiocGenerics caret clusterProfiler data_table glmnet maftools pROC purrr randomForest RColorBrewer survival survminer]; }; - patientProfilesVis = derive2 { name="patientProfilesVis"; version="2.0.5"; sha256="0kb84jpcmnyakggbb8m96qbbc3a7yj1025k13nhirx4i459d0913"; depends=[clinUtils cowplot ggplot2 gridExtra knitr plyr reshape2 scales stringr]; }; + patientProfilesVis = derive2 { name="patientProfilesVis"; version="2.0.6"; sha256="10bx1g0s6ahx7gb1306izs0cq626b5ql5bvcf9598fb9h18zbqv7"; depends=[clinUtils cowplot ggplot2 gridExtra knitr plyr reshape2 scales stringr]; }; patrick = derive2 { name="patrick"; version="0.2.0"; sha256="1ghjvm82hgal091hfjfyz3ndg32xsggip5pp4y0g7rmrzpfjmpjs"; depends=[dplyr purrr rlang testthat tibble]; }; patternator = derive2 { name="patternator"; version="0.1.0"; sha256="0s4vrhdfblllnhpz2awhhrkwm8d4170xg7fpsp7kvvqy8z8biwvi"; depends=[data_table]; }; patternize = derive2 { name="patternize"; version="0.0.5"; sha256="1d0x27fy41sdxhmyj4cy01xxxcbyp4hvxjcybbmgg1r4ivi1sp08"; depends=[abind ClusterR dplyr geomorph imager magrittr Morpho purrr raster RNiftyReg sf sp vegan]; }; @@ -14636,7 +14866,7 @@ in with self; { paws = derive2 { name="paws"; version="0.4.0"; sha256="1l9pjmfnhqgzxghxz22fbqc43x9am6d21f982p2sykxv271yclhf"; depends=[paws_analytics paws_application_integration paws_common paws_compute paws_cost_management paws_customer_engagement paws_database paws_developer_tools paws_end_user_computing paws_machine_learning paws_management paws_networking paws_security_identity paws_storage]; }; paws_analytics = derive2 { name="paws.analytics"; version="0.4.0"; sha256="1x7ix8x0ks357b7gf2skixsd0najjbn8hnq7p6a354p5h7bz39b4"; depends=[paws_common]; }; paws_application_integration = derive2 { name="paws.application.integration"; version="0.4.0"; sha256="0hilnczvamdv3bi1v6hdki05h8qqh0wlgvh5ilh09113005fpz98"; depends=[paws_common]; }; - paws_common = derive2 { name="paws.common"; version="0.6.2"; sha256="1jgls5fks9s8m616qs6b7hvv0wf7nhzajyds15hnlasqwg387h3d"; depends=[base64enc curl digest httr jsonlite Rcpp xml2]; }; + paws_common = derive2 { name="paws.common"; version="0.7.0"; sha256="05rld34brjc32p9f9cbqyyh208rh9idnyih33cpw7bz7bfyicnqm"; depends=[base64enc curl digest httr jsonlite Rcpp xml2]; }; paws_compute = derive2 { name="paws.compute"; version="0.4.0"; sha256="0q0xikrq7095l8fhii2jyjxfbihhnlm7nzzbspfqdh8xbr7g4kld"; depends=[paws_common]; }; paws_cost_management = derive2 { name="paws.cost.management"; version="0.4.0"; sha256="1j9zi73y9ng5m6wlws4crfv4j6b8qxk1m9g1hd286g4gg852g80y"; depends=[paws_common]; }; paws_customer_engagement = derive2 { name="paws.customer.engagement"; version="0.4.0"; sha256="0skfya3m9i36dd0jqvnnc72k1h3lb4s3fjkvg7na6aq6xgpjh4jv"; depends=[paws_common]; }; @@ -14654,7 +14884,7 @@ in with self; { pbatR = derive2 { name="pbatR"; version="2.2-16"; sha256="1sgglw357igphrfrsqbwfk44b31p2vz0d3nr1qivrjp8rqia8b7n"; depends=[rootSolve survival]; }; pbbd = derive2 { name="pbbd"; version="1.0.0"; sha256="07g029qw5949500c879iv86zwg2fldqrz8wzfz335jmcinqimgj6"; depends=[ibd]; }; pbcc = derive2 { name="pbcc"; version="0.0.4"; sha256="1bmb9zn9ryis1fnhr6gz24y1mxbi876hkss0kpyl359pbgiq46p3"; depends=[ggplot2 ggpubr qcc rgenoud]; }; - pbdMPI = derive2 { name="pbdMPI"; version="0.5-0"; sha256="0wfx33jhdrwp97chsp9v8z2yf49shycvky8dwl9pgwqd9l69aw7x"; depends=[float]; }; + pbdMPI = derive2 { name="pbdMPI"; version="0.5-1"; sha256="047pxra6n3pacyqg5qdg8dbz32s8bq8z9dyi5rvs0ax76vr1v8v4"; depends=[float]; }; pbdSLAP = derive2 { name="pbdSLAP"; version="0.3-4"; sha256="11rdsxkvrvm8rbfh5n3y48kzkilc9941hnwxk9a3fmgrbvnlzxfc"; depends=[pbdMPI rlecuyer]; }; pbdZMQ = derive2 { name="pbdZMQ"; version="0.3-10"; sha256="14fi1bcvc77k5qjh0vb5r44p9rzlzrbzbw2c99psnzq2wic018ir"; depends=[]; }; pbivnorm = derive2 { name="pbivnorm"; version="0.6.0"; sha256="05jzrjqxzbcf6z245hlk7sjxiszv9paadaaimvcx5y5qgi87vhq7"; depends=[]; }; @@ -14664,13 +14894,13 @@ in with self; { pbo = derive2 { name="pbo"; version="1.3.5"; sha256="0grj5h06kz8w2p7rzdibg95zpy30r056w14hmy7ij3bpi98sm79z"; depends=[foreach lattice latticeExtra]; }; pbr = derive2 { name="pbr"; version="0.0.2"; sha256="1y984v487hqn22cnhn3cghbvn5bxpvpqsrsizjd06vjwnflpazg2"; depends=[htmltools httr jsonlite leaflet]; }; pbs = derive2 { name="pbs"; version="1.1"; sha256="0cpgs6k5h8y2cia01zs1p4ri8r7ljg2z4x8xcbx73s680dvnxa2w"; depends=[]; }; - pbv = derive2 { name="pbv"; version="0.4-22"; sha256="0658k8ql78y756l15wx0i6gpicgkbczwc6g7dg15i81xy1hg49qb"; depends=[Rcpp RcppArmadillo]; }; + pbv = derive2 { name="pbv"; version="0.5-47"; sha256="14n7szbhasw0qly3cbzh4jw8plinbxarzdbj46vilq3am7ph8yp1"; depends=[Rcpp RcppArmadillo]; }; pcFactorStan = derive2 { name="pcFactorStan"; version="1.5.4"; sha256="09mjvgvdlc85246jgi4x99jr2x2j6c5vn3y3gwjxw61cmmyybqzf"; depends=[BH igraph lifecycle loo mvtnorm Rcpp RcppEigen RcppParallel reshape2 rstan rstantools StanHeaders]; }; pcIRT = derive2 { name="pcIRT"; version="0.2.4"; sha256="0crll51s14nisnaxjln7bc3b1a181v358nfkh1p5iiyn98clacl6"; depends=[combinat Rcpp]; }; pcLasso = derive2 { name="pcLasso"; version="1.2"; sha256="1gkr1kvm4lrd63jcarv9b7gjjcyyny6z49gvy2rcqg17zfqdxysv"; depends=[svd]; }; pcSteiner = derive2 { name="pcSteiner"; version="1.0.0.1"; sha256="021r5c0rw962ywraq75scb2gqv3dxxq4vnaqpia83ljj5ab11qa0"; depends=[igraph]; }; pcaL1 = derive2 { name="pcaL1"; version="1.5.7"; sha256="0k4kq4j45wsplag3nklyhyycpw65jin4i1l6ayci971y1pr3n113"; depends=[]; }; - pcaPP = derive2 { name="pcaPP"; version="2.0-3"; sha256="00ynanxpngzsvq5fsyalyzqz6axqcryy94300afvylwp0d7mbb0s"; depends=[mvtnorm]; }; + pcaPP = derive2 { name="pcaPP"; version="2.0-4"; sha256="0cw18pcbpsr5rc8fxbwnzfag5g76j4hscij7j08zlbyr2436gifn"; depends=[mvtnorm]; }; pcadapt = derive2 { name="pcadapt"; version="4.3.5"; sha256="106h6xvqixi1lgrx1280f7jmdyc5k6da6j9vy49iq2gyma6v2q9v"; depends=[bigutilsr data_table ggplot2 magrittr mmapcharr Rcpp rmio RSpectra]; }; pcal = derive2 { name="pcal"; version="1.0.0"; sha256="07119k5f4h9jc48bicl4q5i7bdrkha3rz22r6g44c8ilnkvjhw6j"; depends=[Rdpack]; }; pcalg = derive2 { name="pcalg"; version="2.7-9"; sha256="05hi5j42x63l2py9iyrrdiladi8xkvwk1dwms6av96wswy9d5cdq"; depends=[abind bdsmatrix BH clue corpcor fastICA ggm graph igraph RBGL Rcpp RcppArmadillo robustbase sfsmisc vcd]; }; @@ -14679,8 +14909,8 @@ in with self; { pcatsAPIclientR = derive2 { name="pcatsAPIclientR"; version="1.1.0"; sha256="13d7cvpjjhxzln4lg7s17wl1apz83b4y4l361j2m4f8wyqwc6b6a"; depends=[httr jsonlite]; }; pccc = derive2 { name="pccc"; version="1.0.5"; sha256="0jh8yadks76ip9jmgvld9nycdm74f5gllkyhfmnrir8vi6xwvbad"; depends=[dplyr Rcpp]; }; pcdpca = derive2 { name="pcdpca"; version="0.4"; sha256="0ys4hrin0w3f87d1d986wvrfkfwapzj9hz7d7v92r60ns74g7r5m"; depends=[fda freqdom]; }; - pcds = derive2 { name="pcds"; version="0.1.7"; sha256="0qwsb4gdbmz6dwq6635nqx4sssvfqcxwmn87sk2d4sdb2afvahx3"; depends=[combinat gMOIP interp plot3D plotrix Rdpack]; }; - pcds_ugraph = derive2 { name="pcds.ugraph"; version="0.1.0"; sha256="0yyqsxn3nfylcwbji9p0laqr9670ppa4widif2zj03w2ghdzanf4"; depends=[interp pcds Rdpack]; }; + pcds = derive2 { name="pcds"; version="0.1.8"; sha256="0cgi54lhgx0lc84nsj91qh8dy8a3f6r7zpkiqwwsx2vn4lm3lsp1"; depends=[combinat gMOIP interp plot3D plotrix Rdpack]; }; + pcds_ugraph = derive2 { name="pcds.ugraph"; version="0.1.1"; sha256="1mfqrc25ppqa88yqymrzlncpw8rviqgsrq50isa2v79hncijlj5v"; depends=[interp pcds Rdpack]; }; pcensmix = derive2 { name="pcensmix"; version="1.2-1"; sha256="1yrz4hdj52in8z65qyl18kh7frv75rb8ss5ljv3vbm6yhxi32jnd"; depends=[]; }; pcev = derive2 { name="pcev"; version="2.2.2"; sha256="1l0afcdzkxzkhkc8ln2fzi50hc7nfq46lg6hhx6rrzkb41w82iqw"; depends=[corpcor RMTstat]; }; pcg = derive2 { name="pcg"; version="1.1"; sha256="194j72hcp7ywq1q3dd493pwkn1fmdg647gmhxcd1jm6xgijhvv87"; depends=[]; }; @@ -14695,8 +14925,8 @@ in with self; { pcse = derive2 { name="pcse"; version="1.9.1.1"; sha256="1rb9146vjkf36vc5v3frykmsff7kp6qp1hhmj8pak583in4rz8f8"; depends=[]; }; pcsstools = derive2 { name="pcsstools"; version="0.1.2"; sha256="0pqc6qpl95dxphi77wcgi0v22a1q455iqaplsrvg32cf0mn3gikg"; depends=[gtools Rdpack]; }; pct = derive2 { name="pct"; version="0.9.9"; sha256="15rshwdrfkr0ahnywss0qqbcyfxakknv9ffvb58nzc960c97zmy8"; depends=[boot crul readr sf stplanr]; }; - pcts = derive2 { name="pcts"; version="0.15.5"; sha256="03iammgirj3vnrwh0fxvy3r08z3da23jbjkb2fzpya1pxfb2rnjq"; depends=[BB gbutils lagged lubridate Matrix mcompanion PolynomF Rdpack sarima xts zoo]; }; - pcutils = derive2 { name="pcutils"; version="0.1.0"; sha256="0g96a4ibfyl8r6955mqjnj94lk1bhdj9hzp3ccm84bynn2xihdz8"; depends=[agricolae dplyr ggplot2 magrittr reshape2 scales]; }; + pcts = derive2 { name="pcts"; version="0.15.7"; sha256="1cr44w561sh05qpi0jyf2ypj4dadwyqkbaqn347v533bywasip2h"; depends=[BB gbutils lagged lubridate Matrix mcompanion PolynomF Rdpack sarima xts zoo]; }; + pcutils = derive2 { name="pcutils"; version="0.2.1"; sha256="1vxni0ysih1v6w8mdk5s2ikpznzx36797zdsgfxj1mv2yhjyaymy"; depends=[agricolae dplyr ggplot2 magrittr reshape2 scales]; }; pcv = derive2 { name="pcv"; version="1.1.0"; sha256="03rpfxdpinr1a6964gch0j852h96jfk4sccs4bv1pzkvv2qsnzlr"; depends=[]; }; pdR = derive2 { name="pdR"; version="1.9.1"; sha256="1vkgzkk5l2wjxldriqxjrkkvyyg6n3bhb69hx90ficnyy5q3z7s7"; depends=[]; }; pdSpecEst = derive2 { name="pdSpecEst"; version="1.2.4"; sha256="1sf2d7vh7a1qc0cq230an8pzg9qi9g640z0ql8x2pp9wfawfzn1f"; depends=[ddalpha multitaper Rcpp RcppArmadillo Rdpack]; }; @@ -14716,7 +14946,7 @@ in with self; { pdqr = derive2 { name="pdqr"; version="0.3.1"; sha256="0yvdvibr5a8bbz6zyvfjv4lzl0fjg7kz8jh67pw4nc1zk1kd8imh"; depends=[]; }; pdt = derive2 { name="pdt"; version="0.0.2"; sha256="1a6h1877vpl0giwjkz7q7p1mzjp9ngkhijhn6l57a1q4sbl84way"; depends=[]; }; pdxTrees = derive2 { name="pdxTrees"; version="0.4.0"; sha256="0cw1zrkawc2wnbd2pif8732kl92qvklxvx6hnikx3siz22psvbl8"; depends=[dplyr magrittr rlang]; }; - pdynmc = derive2 { name="pdynmc"; version="0.9.9"; sha256="00wn8v5z5ksy5xvrrnm38cwrzyds20dw0i29d24z7vpvrsj4b0ad"; depends=[data_table MASS Matrix optimx qlcMatrix Rdpack]; }; + pdynmc = derive2 { name="pdynmc"; version="0.9.10"; sha256="1zz0q3s7cj3ypqz2hp3x2hy7d0m10130qdlk501l8w9z22f7raxq"; depends=[data_table MASS Matrix optimx Rdpack]; }; peRiodiCS = derive2 { name="peRiodiCS"; version="0.5.0"; sha256="1366gmn6qfciwcjsfnbl3hfa16ffn11g00fm0kv74ilvm3nnawk3"; depends=[Hmisc rms]; }; peRspective = derive2 { name="peRspective"; version="0.1.1"; sha256="1dca7592h9yp8lfj866hjzg0d48c84v2kd9l5bsvkw935wwxwg2w"; depends=[crayon dplyr glue httr jsonlite magrittr purrr rlang rlist stringr tibble]; }; peacesciencer = derive2 { name="peacesciencer"; version="1.1.0"; sha256="06mlz2yjihm4xbdipv167ldf8z7r0ldwfn9day5c3lphg73fym5b"; depends=[dplyr geosphere lifecycle magrittr rlang stevemisc stringr tidyr]; }; @@ -14724,23 +14954,24 @@ in with self; { pearson7 = derive2 { name="pearson7"; version="1.0-3"; sha256="0vdhhds1lngaff7dkx4b1az3syqw8b22w2jskcrw0m49wp1dbbha"; depends=[]; }; pec = derive2 { name="pec"; version="2023.04.12"; sha256="15ggf3fa1p5r0dl7k2j99cc920jvmk0p1ny0jzyrpddh8fcgwlk5"; depends=[foreach lava prodlim riskRegression rms survival timereg]; }; pecora = derive2 { name="pecora"; version="0.1.1"; sha256="0l66brd5d24hn279ck785jy4qnxiv9lc3d1czh4f3l25d0hj99xi"; depends=[matrixStats Rcpp RcppArmadillo]; }; + pedFamilias = derive2 { name="pedFamilias"; version="0.2.0"; sha256="1zlnm6pj1x9wb5cjl5dzyzlqyxh5k82s86b1mg7kg5q7qhhmpj9s"; depends=[pedmut pedtools]; }; pedSimulate = derive2 { name="pedSimulate"; version="1.4.3"; sha256="11p7gkxzd9ajyivxnpw4mzdn4c812gihl8q0x5w6h3s9ixsk8qrl"; depends=[]; }; - pedalfast_data = derive2 { name="pedalfast.data"; version="1.0.0"; sha256="02s6igrybcfs8nyxr50iiwclhrwnq3x2x5w886imrlp2wbkf13m4"; depends=[]; }; + pedalfast_data = derive2 { name="pedalfast.data"; version="1.0.1"; sha256="027npj067r4cv0mdgd26x6ilrfz9a0hd0yagkkl3b06nx292pba5"; depends=[]; }; pedbp = derive2 { name="pedbp"; version="1.0.2"; sha256="0yc6185i3jzpwkpmkm38vggyfba0pvz6hvzqfkl6ch591dvkldch"; depends=[ggplot2 scales]; }; pedbuildr = derive2 { name="pedbuildr"; version="0.3.0"; sha256="1yq5ag62yf6qjkxvr4g0xggag0ic5gyby4y5vnhlakwn0h78yirv"; depends=[forrel glue pedmut pedprobr pedtools ribd]; }; pedgene = derive2 { name="pedgene"; version="3.6"; sha256="0h66yshna10fannpdvi0m83s53b1hmnjym2mvc7ypcgr1glq6j13"; depends=[CompQuadForm kinship2 Matrix survey]; }; pedigree = derive2 { name="pedigree"; version="1.4.2"; sha256="1b3zhjn6sl1pnkfqim6xzk6qdak6acdpim585xhjl1rbc41540qx"; depends=[HaploSim Matrix reshape]; }; pedigreeTools = derive2 { name="pedigreeTools"; version="0.2"; sha256="048lpzg0mmbzdc5cd52ssvzlji5293xz7bpqy3cjjszwcfjppc6c"; depends=[Matrix]; }; - pedigreemm = derive2 { name="pedigreemm"; version="0.3-3"; sha256="1bpkba9nxbaxnivrjarf1p2p9dcz6smf9k2djawis1wq9dhylvsb"; depends=[lme4 Matrix]; }; + pedigreemm = derive2 { name="pedigreemm"; version="0.3-4"; sha256="1fy9fq5g94p7v2s0yih1kj4in5gqmip8dd96pls0k9ixbgcqj95v"; depends=[lme4 Matrix]; }; pedmod = derive2 { name="pedmod"; version="0.2.4"; sha256="1xr98vp2s3s2cw4bjdw6156zas15jxvp9fbyz9rxd68i3zrblplx"; depends=[alabama BH psqn Rcpp RcppArmadillo testthat]; }; - pedmut = derive2 { name="pedmut"; version="0.6.0"; sha256="0zgkgmzzw8kmiacvfjdfqc04gwiv04g5p71b4rkndgb8d68v0f6m"; depends=[]; }; + pedmut = derive2 { name="pedmut"; version="0.7.1"; sha256="1wjz0mqwwvxn44lyrdnns0zsadglfs50np8sy6b0w07bpr6izlii"; depends=[]; }; pedometrics = derive2 { name="pedometrics"; version="0.12.1"; sha256="06s1iyv2nldqqkh1n3cgl3a7ribk17kyadgfx76lpgy016fi7vz5"; depends=[lattice latticeExtra Rcpp]; }; pedprobr = derive2 { name="pedprobr"; version="0.8.0"; sha256="0fkr1lsw1aj6010xnjkqd514gpkz88xjw52i6ic47f6pyl0m6irz"; depends=[pedmut pedtools]; }; pedquant = derive2 { name="pedquant"; version="0.2.3"; sha256="1dqzc4w76xfmvis2qkv3s3si9hvrwz58xkn1pmm17hwi5r1jk9pl"; depends=[curl data_table echarts4r httr jsonlite lubridate PerformanceAnalytics readr readxl rvest stringi TTR xefun zoo]; }; pedsuite = derive2 { name="pedsuite"; version="1.2.0"; sha256="1l7yyn8w1lsqlnd79vp2yaxyh6wrkxn4rm1kcbcv5bd9ivxc9k8b"; depends=[dvir forrel ibdsim2 paramlink2 pedbuildr pedmut pedprobr pedtools ribd segregatr verbalisr]; }; - pedtools = derive2 { name="pedtools"; version="2.4.0"; sha256="0hd993g377i0hxsy5abklm6ajcpizfps9lp9qb8bcslzclh06h5v"; depends=[kinship2 pedmut]; }; + pedtools = derive2 { name="pedtools"; version="2.5.0"; sha256="0nlabc5q90qzm506a9ys0nfpr89w42p50w3vxvp8s2sxin9xfngl"; depends=[kinship2 pedmut]; }; peermodels = derive2 { name="peermodels"; version="0.10.3"; sha256="116xn5w7rwm9q0m7bj4z29l4hspj2nqdcxzir9dqpdqmf7z58v67"; depends=[curl httr httr2 jsonlite stringr]; }; - pegas = derive2 { name="pegas"; version="1.2"; sha256="0mdd6wwbgln7272am9pk3p5garmkkf3j76lli4hnxsh9gj9z6fcx"; depends=[ape]; }; + pegas = derive2 { name="pegas"; version="1.3"; sha256="1j1xrnwi80ycwziwcsb48sfdm2ifdzgsn8clh0ai7rvhknrb4ghh"; depends=[ape]; }; pell = derive2 { name="pell"; version="0.1.0"; sha256="1621lnv6sii072did3kj6wapgh9iiqajayvkrmz7q86bp89405sm"; depends=[]; }; pema = derive2 { name="pema"; version="0.1.3"; sha256="0ymzq5s86z97sac1gq8qdh37p2aa39j4pz1n29ga3l0kmv5cxjky"; depends=[BH ggplot2 Rcpp RcppEigen RcppParallel rstan rstantools shiny sn StanHeaders]; }; pempi = derive2 { name="pempi"; version="1.0.0"; sha256="1hvqszfnqwbya73fs36d8mqz277nfbgrwga5z9jfxdnkalxw5bxq"; depends=[]; }; @@ -14755,7 +14986,7 @@ in with self; { penalizedcdf = derive2 { name="penalizedcdf"; version="0.1.0"; sha256="17r9f7n6icn2yhfy5ibr8zccr10yq5k4vgyh59fgdzzf5qk407n3"; depends=[plot_matrix]; }; penalizedclr = derive2 { name="penalizedclr"; version="2.0.0"; sha256="1dg54h6mgy8s3bq3s4xmj4lj0z6wvf0nj5np81mfzzp6fhjqyxhm"; depends=[clogitL1 penalized survival]; }; penaltyLearning = derive2 { name="penaltyLearning"; version="2023.8.31"; sha256="1akajydxzq03pvhmgr3zr69wz6skfgf893dc8krm2aqcdn5b4i9a"; depends=[data_table ggplot2]; }; - pencal = derive2 { name="pencal"; version="2.1.0"; sha256="03mvrrwzpxrxwfd3sh0h7sb2b5kjrddl6wqcvq3kijqm6hs2rv4k"; depends=[doParallel dplyr foreach glmnet lcmm magic MASS Matrix nlme purrr riskRegression survcomp survival survivalROC]; }; + pencal = derive2 { name="pencal"; version="2.1.1"; sha256="1ddiyygd6mv6qbr4z7i445hp8j0x0slxy56xz54vvdbv8l1gxlvg"; depends=[doParallel dplyr foreach glmnet lcmm magic MASS Matrix nlme purrr riskRegression survcomp survival survivalROC]; }; pencopulaCond = derive2 { name="pencopulaCond"; version="0.2"; sha256="18hjjxnd0l2ms20ddqkghfbd4as5kq2rgwqzpz4y38k6nw76x511"; depends=[doParallel fda foreach igraph lattice latticeExtra pacotest quadprog TSP]; }; pendensity = derive2 { name="pendensity"; version="0.2.13"; sha256="1wcsib7m2161nqqrmgdvrj7lr8zq6njc9xr935hwfh3qbbgkmfjb"; depends=[fda lattice]; }; penfa = derive2 { name="penfa"; version="0.1.1"; sha256="1r8lq4kvlwlk7q0mdzkrdm9sx7lqq4l27jfxa1zcfh50sk1qlam2"; depends=[GJRM MASS mgcv trust]; }; @@ -14767,24 +14998,25 @@ in with self; { pepe = derive2 { name="pepe"; version="1.2.0"; sha256="1ihms63crxq0k7hd2yjyxmfw0yfy668srw012vi8mf8p31jdcr3j"; depends=[dplyr ggplot2 psych tidyr]; }; peperr = derive2 { name="peperr"; version="1.5"; sha256="0045bc206y13467kw5xh3awkwcz24sb5xmdcgh5x1w6q1cab7ygp"; depends=[snowfall survival]; }; peppm = derive2 { name="peppm"; version="0.0.1"; sha256="1lvk1rjsx39mb93s9pclriw4fmf1sx05s59qqx5m3aqb4q8ffxkg"; depends=[Rcpp]; }; + pepr = derive2 { name="pepr"; version="0.5.0"; sha256="0q2pfsch6g3zhaj6cffg6rzmlrmzwpvny84nls6x5jjljhan4nzz"; depends=[data_table pryr RCurl stringr yaml]; }; peptider = derive2 { name="peptider"; version="0.2.2"; sha256="109z81x6jcsx2651lclff7ak55zb1i89pyi58rxri40aamx4b1x2"; depends=[discreteRV dplyr plyr]; }; peptoolkit = derive2 { name="peptoolkit"; version="0.0.1"; sha256="067x3v8m3ph2mqcglbd2h4y7xsslcvdr5iailiqxzfqg77mcqxx6"; depends=[caret dplyr Peptides stringr]; }; pequod = derive2 { name="pequod"; version="0.0-5"; sha256="0mwrgyrxgiifpnpy15qxpdrdmd7dxqihccrnj5nh8fq9fvwymamg"; depends=[car ggplot2]; }; + perARMA = derive2 { name="perARMA"; version="1.7"; sha256="1d3gg5yb2gj3mfmk72lps40hkiaf65wv7zhhgxf918kqyqi5zhs2"; depends=[corpcor gnm matlab Matrix signal]; }; peramo = derive2 { name="peramo"; version="0.1.3"; sha256="0ngzf6piglr00r4i1m3r9mvlw67hs96lbfxv832vwisf631fdvlf"; depends=[dplyr emmeans lme4 magrittr parameters]; }; perccalc = derive2 { name="perccalc"; version="1.0.5"; sha256="14557k7khc3l5m0vlam0fvbsb6p78v9gfcnx5ksxcvrab28xj7p3"; depends=[multcomp tibble]; }; - percentiles = derive2 { name="percentiles"; version="0.2.2"; sha256="08gzl2qq0856nj20bdxl3r0a7p5f4cjmvxkaqkjvq4n275ghvskq"; depends=[assertive_types assertthat dplyr R6]; }; perfectphyloR = derive2 { name="perfectphyloR"; version="0.2.1"; sha256="1i1h5k2aqaqygd8gzq2bmz266mjzdi2mfikkz6hzmhi2il8708w9"; depends=[ape phytools Rcpp RcppArmadillo]; }; - performance = derive2 { name="performance"; version="0.10.5"; sha256="1bwcdz2iah6ya1p9ykbj5ybvzwlq9spv6mq3fn68cckymg0hs76r"; depends=[bayestestR datawizard insight]; }; + performance = derive2 { name="performance"; version="0.10.8"; sha256="0zvj0bzbqcy35jcg1s6b1wqbz7rbajzvjm74aks4j6iq4grh4d2j"; depends=[bayestestR datawizard insight]; }; performanceEstimation = derive2 { name="performanceEstimation"; version="1.1.0"; sha256="08jx2zl6xh0rp54xa70gb717wbfdzfrx9b47i3b3ly41qaf85vrc"; depends=[dplyr ggplot2 parallelMap tidyr]; }; pergola = derive2 { name="pergola"; version="1.0"; sha256="1650ipp2b455xdkznwm7bnxvimad7nbyr9i1lg2vdh64j1qfh7gl"; depends=[seriation]; }; - periscope = derive2 { name="periscope"; version="1.0.3"; sha256="1llni5xs5fpnls3zysx0wrp4hc40qc6ll9vdpmffs6v2irnz43bz"; depends=[DT fresh ggplot2 lubridate shiny shinyBS shinydashboard writexl yaml]; }; - periscope2 = derive2 { name="periscope2"; version="0.1.3"; sha256="16w730jy6viqvzvn1lvbjxfy4jqlf6wmpz957lf98kpy0g94hjg0"; depends=[bs4Dash DT fresh lubridate shiny shinyWidgets writexl yaml]; }; + periscope = derive2 { name="periscope"; version="1.0.4"; sha256="0w7p8clpaa605jcyvlkj86w8l92pgvilifwnagqj3x1nqaxgyhw3"; depends=[DT fresh ggplot2 lubridate shiny shinyBS shinydashboard writexl yaml]; }; + periscope2 = derive2 { name="periscope2"; version="0.2.2"; sha256="0nxzz314gpm9z92y6ajf0fdfja923ay7f7866mp4ri5h78plf0yx"; depends=[bs4Dash DT fresh lubridate shiny shinyFeedback shinyWidgets writexl yaml]; }; perm = derive2 { name="perm"; version="1.0-0.4"; sha256="1sbvc9pd8j4wigblncd5jsgfnphp4kz1jy3acyivcclh79wh27jn"; depends=[]; }; - permChacko = derive2 { name="permChacko"; version="0.1.0"; sha256="0in292c8yclmhbzkdcv4abqh1gh2xwjlbd7k54mqhjj1m51y1l6p"; depends=[]; }; + permChacko = derive2 { name="permChacko"; version="0.2.0"; sha256="1jcgg0v7a70sw02qw6kxyc58kn4rczcrvgwsjpg9sj4ybgax42s9"; depends=[]; }; permGS = derive2 { name="permGS"; version="0.2.5"; sha256="0d2kp3c1fmnjjmsvc2qwh6m66yqvy2vrrxgv1fj2i4clsbavfa0y"; depends=[coin survival]; }; permPATH = derive2 { name="permPATH"; version="1.3"; sha256="1xjhpndlqdafv7g5yrps2rby8by76sh6y7kg2jhwbh6bv7x0d975"; depends=[R2HTML xtable]; }; permimp = derive2 { name="permimp"; version="1.0-2"; sha256="1zq513bkallkkqghjilvgc5iw0pcglrdyc0r2sns4ck07a3q378j"; depends=[ipred party randomForest survival]; }; - perms = derive2 { name="perms"; version="1.11"; sha256="027npxl4213nfzkpaigb015djbqsssfvb5lwfs17qrzvp5qqw53m"; depends=[doParallel foreach MASS mclust Rdpack]; }; + perms = derive2 { name="perms"; version="1.13"; sha256="0zi7a8pai7j2i9ckfn87f2g5nm3r54631cib0lz0xdzczad2j2nr"; depends=[doParallel foreach MASS mclust Rdpack]; }; permubiome = derive2 { name="permubiome"; version="1.3.2"; sha256="102xmz27c97nc6wlllqq1k3nkvv28a0j7vx1msl0c7m6w2z6395b"; depends=[dabestr dplyr ggplot2 gridExtra Matrix rlang]; }; permuco = derive2 { name="permuco"; version="1.1.2"; sha256="0lh7n94hchq7wcp8j27c1m2v0xa5mq1dzpdvzkv2cwagy45v4383"; depends=[Matrix permute Rcpp]; }; permutations = derive2 { name="permutations"; version="1.1-2"; sha256="0ilwf5d3cl6vv7dgdcdw4crlrxa6h5q4d3z17la71k3cz6ib3hvk"; depends=[freealg magic mathjaxr numbers partitions]; }; @@ -14807,10 +15039,11 @@ in with self; { petitr = derive2 { name="petitr"; version="1.0"; sha256="0i13zhdrdka0ij0khdzj6ylvvcn4wxvplb8a368i1s64cpgak30c"; depends=[]; }; petrinetR = derive2 { name="petrinetR"; version="0.3.0"; sha256="0s67clfpphwxx8lyb2559sk6i6a5zmxdds0pzfj23blbacnlk16c"; depends=[DiagrammeR dplyr lifecycle purrr visNetwork xml2]; }; pewdata = derive2 { name="pewdata"; version="0.3.2"; sha256="1a4ci8hzpmwxs48lsppswcwkxv72yn44w486m9izwvx8wr1nlh2d"; depends=[foreign magrittr purrr rio RSelenium stringr]; }; + pexm = derive2 { name="pexm"; version="1.1.3"; sha256="17wc0qxcs1p282lrv2ji8lj3c8d656b4dl2mjbsywgyq29lzl1lz"; depends=[coda msm rjags]; }; pez = derive2 { name="pez"; version="1.2-4"; sha256="1z3lpbijivr32r9y0lh2yxsww7sz9kqmsvnril1gzn09d498xz3b"; depends=[ade4 animation ape caper FD Matrix mvtnorm phytools picante quantreg vegan]; }; pfa = derive2 { name="pfa"; version="1.1"; sha256="0ikdd7ps8wnjp9nm66w447m06hqxnnk553jglxikl2w5d9vk6b31"; depends=[lars POET quantreg]; }; pfica = derive2 { name="pfica"; version="0.1.3"; sha256="10njqflljcp8rxm5l7aqg6x93wbivdzvkjh7q6z01syblgb9755l"; depends=[expm fda whitening]; }; - pfr = derive2 { name="pfr"; version="1.0.0"; sha256="00fq3d2np5vvvyj6m2zc4hyjaz79j2fdhyxg7rqg71ibaq02r9cn"; depends=[inline rstudioapi]; }; + pfr = derive2 { name="pfr"; version="1.0.1"; sha256="09x8b3qa3bfg4sh0qavzsw72xh64a0qhic7pm3gn03znavg7pzlz"; depends=[inline rstudioapi]; }; pg = derive2 { name="pg"; version="0.2.4"; sha256="0dbviqi7v1jyxj8nav0w25mghgbv077mgcnznr0pfh85lwzpkawr"; depends=[Rcpp RcppArmadillo]; }; pgTools = derive2 { name="pgTools"; version="1.0.2"; sha256="1262q30ci6h10sk54s9wbadz6v22y4k6m32sclxw93kkvgvlkj6b"; depends=[data_table DBI odbc stringi toolbox]; }; pgam = derive2 { name="pgam"; version="0.4.17"; sha256="03sln908xwg909m3pxi6ihpq3vzb0v0mj6yac7bx29x5rxcd6psy"; depends=[]; }; @@ -14823,7 +15056,6 @@ in with self; { pgnorm = derive2 { name="pgnorm"; version="2.0"; sha256="1k9z7pvmranr8m62v7amc0pj6lwzh3wqi79gg3mflifn1mr6c057"; depends=[]; }; pgraph = derive2 { name="pgraph"; version="1.6"; sha256="1mfpyj4ahs5szkzzv5fs9g26651vcnign3mkfgp23g8nlrs50cqa"; depends=[energy glasso glmnet SAM]; }; pgsc = derive2 { name="pgsc"; version="1.0.0"; sha256="1y4szqn1jhp3yn8q738dpbhnqcqk45vgbmczamai154w3wb0qai7"; depends=[nloptr Rcpp RcppArmadillo reshape2]; }; - pguIMP = derive2 { name="pguIMP"; version="0.0.0.3"; sha256="1kdwpykyxxd1zy531smijdd1n74a12pkxc9ld4pa3jcxih71xl0y"; depends=[bbmle DataVisualizations dbscan dplyr DT e1071 finalfit ggplot2 ggthemes gridExtra Hmisc magrittr MASS mice nortest outliers plotly psych purrr R6 rcompanion readr readxl rJava rlang rmarkdown robust RWeka shiny shinydashboard shinyjs shinyWidgets stringr tibble tidyr tidyselect VIM writexl]; }; ph2bayes = derive2 { name="ph2bayes"; version="0.0.2"; sha256="1xm7930gycxrz308dnfnp023yidqik52sbrli35f3773mnfcid2g"; depends=[Rcpp]; }; ph2bye = derive2 { name="ph2bye"; version="0.1.4"; sha256="0h5d8d4bagkp6g0nb67cb225ki5p1amnclnfj6afgdcsli5clr67"; depends=[animation nleqslv Rcpp VGAM]; }; ph2mult = derive2 { name="ph2mult"; version="0.1.1"; sha256="0w3w18fkr9xzv6mpb00cz5id33zgsnl6s8zgjpchzvrhmpjpp437"; depends=[clinfun]; }; @@ -14832,8 +15064,8 @@ in with self; { phantSEM = derive2 { name="phantSEM"; version="1.0.0.0"; sha256="099kflbj66wfkl7b6f1l68763b7qkpjihp4r1xih5lvjwc8ap0b9"; depends=[corpcor dplyr lavaan tidyr]; }; pharmaRTF = derive2 { name="pharmaRTF"; version="0.1.4"; sha256="1h16r4yhlm6mbwq3k24ssm70bsrg2hvykqh8dayigz5wi2nq5c1f"; depends=[assertthat huxtable purrr stringr]; }; pharmaverse = derive2 { name="pharmaverse"; version="0.0.2"; sha256="0wvil5fswdzfvmqii5j7y81ik2bwjznywb8c9nj3yd99az96qxg4"; depends=[httr]; }; - pharmaverseadam = derive2 { name="pharmaverseadam"; version="0.1.1"; sha256="1cz8jpn29krhnsx6gvp4kdaajr75kf4rskcg5y5q4ljarq892qzc"; depends=[]; }; - pharmaversesdtm = derive2 { name="pharmaversesdtm"; version="0.1.1"; sha256="1gbf6b29nls47i0kw4b5xhd4bgqhyza18k93k58rwn7xjy6rfhcy"; depends=[]; }; + pharmaverseadam = derive2 { name="pharmaverseadam"; version="0.2.0"; sha256="18pmbvjy4v7182kriffp733snb84inqjii6gj1g0l5ahh24k7xim"; depends=[]; }; + pharmaversesdtm = derive2 { name="pharmaversesdtm"; version="0.2.0"; sha256="1xbpvf3xf4n94q52makvrmfjgsqg8syx0rza0g93srqnsmrka7i1"; depends=[]; }; pharmr = derive2 { name="pharmr"; version="0.96.0"; sha256="0kwa3jvchayx7jkfp896h0dkq2h2nw5wj0fpnqvspfj0r94pg8m1"; depends=[altair reticulate]; }; phase = derive2 { name="phase"; version="1.2.9"; sha256="12v453jn99jzvicr5xipzkgb1yqmrkv9gbpw7ykl19kakw7qnqs3"; depends=[behavr circular lubridate plotly pracma shiny shinycssloaders shinydashboard shinyFiles shinythemes signal wesanderson zeitgebr zoo]; }; phase1PRMD = derive2 { name="phase1PRMD"; version="1.0.2"; sha256="0gr73nsp0an0ci6l86h9fw6l791jdw0b1497qi58w25zypggdyac"; depends=[arrayhelpers coda dplyr ggplot2 gridExtra kableExtra knitr MASS plyr RColorBrewer reshape2 rjags]; }; @@ -14841,6 +15073,7 @@ in with self; { phaseR = derive2 { name="phaseR"; version="2.2.1"; sha256="1gq882r4jkq8f0xm3qmjh4zx540sgpdhlj8894dhf5g6vhgaa1kd"; depends=[deSolve]; }; phateR = derive2 { name="phateR"; version="1.0.7"; sha256="16xb6fy0aa024054jwfbavjbzhwj6g4p6yrzy1lnzvpn8kb23hn5"; depends=[ggplot2 Matrix memoise reticulate]; }; phd = derive2 { name="phd"; version="0.2"; sha256="14ck98h8ivaw88ybl5pwv70s5jwhkhdgmxg7q0b5bphj8hyf616r"; depends=[glmnet]; }; + phdcocktail = derive2 { name="phdcocktail"; version="0.1.0"; sha256="02gsyjqmafl5aw18lzd54ldfy521r9r9iwqlc44yqn70pi0i8rrs"; depends=[ggplot2 here RColorBrewer rstudioapi scales]; }; pheatmap = derive2 { name="pheatmap"; version="1.0.12"; sha256="1hdh74az3vyzz6dqa311rhxdm74n46lyr03p862kn80p0kp9d7ap"; depends=[gtable RColorBrewer scales]; }; pheble = derive2 { name="pheble"; version="0.1.0"; sha256="14q66ldpksxsh5q7mpgp4d9p43kbx1v4yqd35p3gqi6qxrlb5q1z"; depends=[adabag C50 caret caTools data_table doParallel dplyr e1071 earth evtree frbs glmnet gmodels hda HDclassif ipred kernlab kknn klaR magrittr MASS Matrix mda MLmetrics nnet party pls randomForest rpartScore sparseLDA themis]; }; phecodemap = derive2 { name="phecodemap"; version="0.1.0"; sha256="12dhyzazdsf938zp7i4ckbh2h5fvxg209mb4mq319akp34746h50"; depends=[collapsibleTree config dplyr DT golem plotly purrr readr rintrojs shiny shinyBS shinycssloaders shinydashboard shinydashboardPlus]; }; @@ -14858,27 +15091,27 @@ in with self; { phenopix = derive2 { name="phenopix"; version="2.4.3"; sha256="1vhv2adv9k5gczcdqsbizdl58mzz47w60zwnv6hx650yirddgx3b"; depends=[bcp doParallel foreach gtools iterators jpeg plyr raster sp stringr strucchange zoo]; }; phers = derive2 { name="phers"; version="1.0.2"; sha256="00w84l5p9rwq3hgjx792fk2yhrnal143ph29ybcqrha40hglbbas"; depends=[BEDMatrix checkmate data_table foreach iterators survival]; }; phiDelta = derive2 { name="phiDelta"; version="1.0.1"; sha256="0g1g5516p8i1gfpvsy75rdirib8sx1ki2mbf1cvgsnzh70h72gbv"; depends=[]; }; - phia = derive2 { name="phia"; version="0.2-1"; sha256="0rv2akl5a488vax4sd9wnx765mch4vvcmg3iyxyljzl5kpqh5r00"; depends=[car Matrix]; }; - philentropy = derive2 { name="philentropy"; version="0.7.0"; sha256="1dw46p2bk68hqbc44629lywg5r1mdaz37ahccgmsx07fg8rf4wnf"; depends=[KernSmooth poorman Rcpp]; }; + phia = derive2 { name="phia"; version="0.3-1"; sha256="1lsprm49njwp0gfn4knvwdq7d5lpq4irhysl8f26glcz9x929sff"; depends=[car Matrix]; }; + philentropy = derive2 { name="philentropy"; version="0.8.0"; sha256="0gmycszk86mc9clmxfdrspqh5z0g3cw2cgzaaqngxx38h68x99is"; depends=[KernSmooth poorman Rcpp]; }; phm = derive2 { name="phm"; version="1.1.0"; sha256="12g3pppy5hq5lwwbv511fx523cwn7gqg9fr861p8kmbvjwgpw1pp"; depends=[data_table Matrix NLP shiny smallstuff tm]; }; phonR = derive2 { name="phonR"; version="1.0-7"; sha256="0al2cbynnbvmd90lk1w1g1ppslqq0ng8vbb6bl7m4kqwd2lgv056"; depends=[deldir plotrix splancs]; }; - phonTools = derive2 { name="phonTools"; version="0.2-2.1"; sha256="01i481mhswsys3gpasw9gn6nxkfmi7bz46g5c84m13pg0cv8hxc7"; depends=[]; }; + phonTools = derive2 { name="phonTools"; version="0.2-2.2"; sha256="0r5ylbxvzpa23yys4rxdlglfc5jq997ziw6yf8v9jyavy4p1ppkx"; depends=[]; }; phonenumber = derive2 { name="phonenumber"; version="0.2.3"; sha256="1gwh7cg1zyy197sj16wcxqyz2rx5z83cd4rwmf22ycpgvz2dwzw9"; depends=[]; }; - phonfieldwork = derive2 { name="phonfieldwork"; version="0.0.11"; sha256="0a5qnl1r8g0h1nsp22awp6hy0lkdi6adc729grpz8mbniz4vdlkc"; depends=[phonTools rmarkdown tuneR uchardet xml2]; }; phonics = derive2 { name="phonics"; version="1.3.10"; sha256="1g4gmfz190xaj800gawl79fzhmgimssa31kqzw8a70scp5psz3fw"; depends=[BH data_table Rcpp]; }; phosphoricons = derive2 { name="phosphoricons"; version="0.2.0"; sha256="0g9qqgxnzi773mjrrzvlykmvqb7dpi2gxc999arbxkdnbp1lv463"; depends=[htmltools]; }; photobiology = derive2 { name="photobiology"; version="0.11.0"; sha256="15x6nzl2pgs1bz37z5zn9gphi93c1gibps7gjf10v9rw0ll4gj8q"; depends=[dplyr lubridate plyr polynom rlang splus2R stringr tibble tidyr zoo]; }; photobiologyFilters = derive2 { name="photobiologyFilters"; version="0.5.2"; sha256="0n987klwyj06xikmvg9cvsjzrxll1d7p358jw4ls0j46byki98s5"; depends=[photobiology]; }; photobiologyInOut = derive2 { name="photobiologyInOut"; version="0.4.27"; sha256="1z5vyh44mp4nfp3b2piv6fs8b6k963yw0zb2dgiz8qfgzsyfhnzr"; depends=[anytime colorSpec dplyr lubridate photobiology readr readxl stringr tibble tidyr tidyselect]; }; - photobiologyLEDs = derive2 { name="photobiologyLEDs"; version="0.5.1"; sha256="1wlf8n7g9scnnz3gimbpfn1klqd88ff5yddvcsas6qb8bn7ia3aa"; depends=[photobiology]; }; - photobiologyLamps = derive2 { name="photobiologyLamps"; version="0.5.1"; sha256="0np62vs5ad0h9mdbcia22gxndy20nrs377hs2hd80f3pqqppbmxa"; depends=[photobiology]; }; + photobiologyLEDs = derive2 { name="photobiologyLEDs"; version="0.5.2"; sha256="0868ja97wy0cj3nia31xp646yni0q56na87rz63pb33spkw36r6p"; depends=[photobiology]; }; + photobiologyLamps = derive2 { name="photobiologyLamps"; version="0.5.2"; sha256="1sl6340zblq6j3djdygqydf9x0bh5jm0mir8j1jjw2snbppy6dfl"; depends=[photobiology]; }; photobiologyPlants = derive2 { name="photobiologyPlants"; version="0.4.3"; sha256="0s3c3x7l3q8a8zaf9nww7w551mdracp6ljy08959p3sgmrjic4kw"; depends=[photobiology photobiologyWavebands]; }; - photobiologySensors = derive2 { name="photobiologySensors"; version="0.5.0"; sha256="122cfy6nsxngd8hnbq5frkgnzrb9fxw83l7mfwk0wy6gx7zsfx5s"; depends=[photobiology]; }; + photobiologySensors = derive2 { name="photobiologySensors"; version="0.5.1"; sha256="0jc801c8fm5fdbs67nc8d5cga9c2cfdfrjh6i6qf60g7kxddsnsf"; depends=[photobiology]; }; photobiologySun = derive2 { name="photobiologySun"; version="0.4.1"; sha256="15wp8q29m5c4qplind9098ikxmm1r60lw8cm0pa48lmh33638ia3"; depends=[photobiology]; }; - photobiologyWavebands = derive2 { name="photobiologyWavebands"; version="0.5.1"; sha256="0ckfs0kc14478fab35ayilmmvq72ph5bpdhbbb1kmwv3lf40lnc8"; depends=[photobiology]; }; + photobiologyWavebands = derive2 { name="photobiologyWavebands"; version="0.5.2"; sha256="0p4as2kpcjy0mc38pmjjlpngbf4568zn5rpz9rhrlc0ynarrgnzj"; depends=[photobiology]; }; photosynthesis = derive2 { name="photosynthesis"; version="2.1.4"; sha256="1bilhqzhwxanlxvn98piysv45bpw7zh7f5w56rvllxgrpmra68pq"; depends=[checkmate crayon dplyr furrr ggplot2 glue gunit lifecycle magrittr minpack_lm nlme progress purrr readr rlang stringr tealeaves units]; }; phrases = derive2 { name="phrases"; version="0.1"; sha256="1am90fgi8bqf4mmw797knczj7pv7py2in4rm0m6l1xz4zfjihqw3"; depends=[tidyverse usethis]; }; - phreeqc = derive2 { name="phreeqc"; version="3.7.5"; sha256="13z1pl2hqv26bm6k3zj9hh69xw0jf1swjimmib82r8n0xjs5dy8m"; depends=[]; }; + phreeqc = derive2 { name="phreeqc"; version="3.7.6"; sha256="086c8lpg6sq57j4q1nazl9gx51mfc5yz22yrw9qz115v8hbmq7w3"; depends=[]; }; + phsmethods = derive2 { name="phsmethods"; version="1.0.2"; sha256="05z1l7jppg5mfrwbgkx59ybjc4321cihrh5j6bsvx72waapswic9"; depends=[cli dplyr lifecycle lubridate magrittr readr rlang scales stringr tibble]; }; phuassess = derive2 { name="phuassess"; version="1.1"; sha256="0jplj9gih32dllx2hw5aqvc9b94sbrbv66s3a5r8mdbpjh93rhng"; depends=[]; }; phyclust = derive2 { name="phyclust"; version="0.1-34"; sha256="1wzmd02ng7zphn97xdra3hgivrxqpizqcy5kpg45sk7jx4q7016j"; depends=[ape]; }; phyext2 = derive2 { name="phyext2"; version="0.0.4"; sha256="0j871kgqm9fll0vdgh071z77ib51y8pxxm0ssjszljvvpx1mb8rb"; depends=[ape phylobase]; }; @@ -14892,9 +15125,10 @@ in with self; { phylolm = derive2 { name="phylolm"; version="2.6.2"; sha256="04pz7i44s8w6py4nk2zilzjlkrf1c5dbb6jij7zfkk49hvslbynn"; depends=[ape future_apply]; }; phylometrics = derive2 { name="phylometrics"; version="0.0.1"; sha256="1pmr6l3wmaf91wdlsc5m63l07fibngnly2qzkma0rdi463ii03il"; depends=[mvtnorm]; }; phylopath = derive2 { name="phylopath"; version="1.2.0"; sha256="1bmsnxkr9cd7v84rkdxy5f9bwh4siwggkq0g23y8pcpl8v9vs8ph"; depends=[ape future_apply ggm ggplot2 ggraph igraph MuMIn phylolm purrr tibble]; }; + phyloraster = derive2 { name="phyloraster"; version="2.0.1"; sha256="1ac41ik17b2zdrcf5n9v3mg7k99r5m50s9lbb05ggjhpqmx8s5bh"; depends=[ape phylobase SESraster terra]; }; phyloregion = derive2 { name="phyloregion"; version="1.0.8"; sha256="10i5s3dv71nr0m3wmph2rynzg9zj8xqzb6a25r5kj66r8v91jz3d"; depends=[ape betapart clustMixType colorspace igraph maptpx Matrix phangorn predicts smoothr terra vegan]; }; phylosamp = derive2 { name="phylosamp"; version="1.0.1"; sha256="1y48c4qjcxcxia2ggp2dfi051z8zpp0a0ks3a7h69gsw34vh9kd7"; depends=[cli lifecycle rlang]; }; - phylosem = derive2 { name="phylosem"; version="1.1.0"; sha256="1j9cpfaylnsmrzxq43sqh94zvwd2ppd9w7yq52hkikxgldrsvi8q"; depends=[ape phylobase phylopath RcppEigen sem TMB]; }; + phylosem = derive2 { name="phylosem"; version="1.1.2"; sha256="1cpnq6jdf03ssb3yslb4jk29h0s0yi2wqzgrw9sinm9rr1n7x5zi"; depends=[ape phylobase phylopath RcppEigen sem TMB]; }; phyloseqGraphTest = derive2 { name="phyloseqGraphTest"; version="0.1.0"; sha256="0y1hxj68dcic4i7ihnw9hgf28qp6s6kpq4c08dy7gv19gq7sllgd"; depends=[ggnetwork ggplot2 igraph intergraph phyloseq]; }; phylosignal = derive2 { name="phylosignal"; version="1.3.1"; sha256="13gahqnxvqzvyr4x1aq3cq08832ljizsa5c71hf44175dfmdz5cd"; depends=[adephylo ape boot DBI igraph phylobase Rcpp RcppArmadillo]; }; phylotate = derive2 { name="phylotate"; version="1.3"; sha256="092kvn32j06vm8ilwjkgidcz11r3qhsmi0cb0g0nnykw0a0vii4p"; depends=[]; }; @@ -14904,29 +15138,29 @@ in with self; { phyreg = derive2 { name="phyreg"; version="1.0.2"; sha256="0m1psq79zl7h8791pl8g6i0ybda7vgddza8r9mwqhg4sw1q4bzcp"; depends=[]; }; physiology = derive2 { name="physiology"; version="1.2.1"; sha256="1z7xymwgj7bqn0yvcz3q8pvwhpr5vx5qd0x8sayal1vgpqc0nccb"; depends=[Rcpp]; }; phytoclass = derive2 { name="phytoclass"; version="1.0.0"; sha256="0ci2xzhxzg8fmdjr1ij8r551mm5gzwcxbq328qnzkx8hyph7fbgf"; depends=[bestNormalize dplyr dynamicTreeCut ggplot2 Metrics RcppML tidyr]; }; - phytools = derive2 { name="phytools"; version="1.9-16"; sha256="175jg56g6ag1q5p4isjprlgzc9ximlkanh7zxyc9jrqp59r0p00v"; depends=[ape clusterGeneration coda combinat doParallel expm foreach maps MASS mnormt nlme numDeriv optimParallel phangorn plotrix scatterplot3d]; }; + phytools = derive2 { name="phytools"; version="2.1-1"; sha256="05035zv9605hr4ig42k3krijaqkbbh9fvv4w5384fz1wlgqap0c6"; depends=[ape clusterGeneration coda combinat doParallel expm foreach maps MASS mnormt nlme numDeriv optimParallel phangorn scatterplot3d]; }; piRF = derive2 { name="piRF"; version="0.1.0"; sha256="04k09ylc6hqw57dlv7sfnisn1167dr550y1j9xl7prvlf3jksg06"; depends=[Rdpack]; }; - piar = derive2 { name="piar"; version="0.5.0"; sha256="1fh35cs73q24fwaxakysbm9jvv9vlmvz7ir2pqd9d1qgkv5a5n48"; depends=[gpindex]; }; + piar = derive2 { name="piar"; version="0.6.0"; sha256="1wlz3gk88jnllrai7yjq4kl062q80w835kcs6m824an6g0hjv2k4"; depends=[gpindex Matrix]; }; + picClip = derive2 { name="picClip"; version="0.1.0"; sha256="1gxl9v39zm2hx04rdfnnbrg6q5rnpzj7aybva6zxh3skfi0dbidr"; depends=[base64enc htmltools shiny stringr testthat]; }; picR = derive2 { name="picR"; version="1.0.0"; sha256="0x5a9qgn66w06sl2c448ricby1bqiw3cpli1mnpslanym7m60nsb"; depends=[]; }; picante = derive2 { name="picante"; version="1.8.2"; sha256="19savjzj44b7ifdxcp02ynj22z4n4ikq2aipc74ljzy3yykmqmjn"; depends=[ape nlme vegan]; }; picasso = derive2 { name="picasso"; version="1.3.1"; sha256="1z7zm88wjp7fia7054l7i55f152iddrjj9wbcpcskhc8s6kfg53c"; depends=[MASS Matrix]; }; picker = derive2 { name="picker"; version="0.2.6"; sha256="1n7h1lvrivy7czzhisd9p3g187ivcyhzyjj7ahkimyb296gy8z1b"; depends=[htmlwidgets]; }; pid = derive2 { name="pid"; version="0.50"; sha256="05s3xqf95d4avh7gkr49jsm8jzacbv694c3wgppkkc40zip6vkc7"; depends=[DoE_base FrF2 FrF2_catlg128 ggplot2 png]; }; piecemaker = derive2 { name="piecemaker"; version="1.0.2"; sha256="15zk36cpip49286djl45qqdfbj4w3yc6if1vk4bqphrascrg2val"; depends=[cli glue rlang stringi stringr]; }; - piecepackr = derive2 { name="piecepackr"; version="1.13.8"; sha256="1cj623bwagjpj2ih7g8b5aqibq803jn5nam54gfpyw9lccphgp35"; depends=[gridGeometry grImport2 jpeg png purrr R6 rlang stringr tibble]; }; + piecepackr = derive2 { name="piecepackr"; version="1.13.10"; sha256="1pplmwgi0wyp4qx6arlh96qiqxhlwb77g57bx70r10p99pfmjhyn"; depends=[gridGeometry grImport2 jpeg png purrr R6 rlang stringr tibble]; }; piecewiseSEM = derive2 { name="piecewiseSEM"; version="2.3.0"; sha256="0f1ya6p85iai52cdm510zm6qvkpsfkn48948q8lz9v6ykz59v5h2"; depends=[car DiagrammeR emmeans igraph lme4 MASS multcomp MuMIn nlme performance]; }; piggyback = derive2 { name="piggyback"; version="0.1.5"; sha256="1vkawf3jk8ddzapgvbixzq2kswnprfpjkvinby4z5x9gg535lfwq"; depends=[cli fs gh glue httr jsonlite lubridate memoise]; }; - piglet = derive2 { name="piglet"; version="1.0.1"; sha256="09l2qj8naalk8ywkmx0wmk82jllyd60g373jvy619kz7ad9dc1xp"; depends=[alakazam Biostrings circlize ComplexHeatmap data_table DECIPHER dendextend dplyr ggmsa ggplot2 jsonlite magrittr R6 RColorBrewer rlang splitstackshape tigger zen4R]; }; pillar = derive2 { name="pillar"; version="1.9.0"; sha256="1k3sp37dpn46d2xbq621alpvzgnm06x5qb87nk169y47q23b8gpj"; depends=[cli fansi glue lifecycle rlang utf8 vctrs]; }; pim = derive2 { name="pim"; version="2.0.2"; sha256="0kwlm6n23ccs0jz4plsqprg6inj3qv74zhvg9gpxyj3ksvdxp58i"; depends=[BB nleqslv]; }; pimeta = derive2 { name="pimeta"; version="1.1.3"; sha256="1mx0m438db4n041bns6sm8sr8vrj6w8b2kvpmrkkp0bly2vpv40q"; depends=[ggplot2 Rcpp RcppEigen scales]; }; - pinfsc50 = derive2 { name="pinfsc50"; version="1.2.0"; sha256="1547xyxmfb7zi8h9bsm6k67dcw4hpp129xzvmgwfw7r6p4af47zd"; depends=[]; }; + pinfsc50 = derive2 { name="pinfsc50"; version="1.3.0"; sha256="1gs9x328qqvqwx3k4z9jgzq5zb6g8kdz4430n96v7zb78p7jf5lp"; depends=[]; }; pingers = derive2 { name="pingers"; version="0.1.1"; sha256="09np6aph6rhvdh6mwky8a57i38bi2amwi7x91p9kfb2mzkql8k8w"; depends=[data_table dplyr lubridate plotly reshape2 stringr tibble tictoc tidyselect]; }; - pingr = derive2 { name="pingr"; version="2.0.2"; sha256="05crkb3fxz0g2vqlydma8jk85adhgb4xmah1zv2kg4fli6phg71c"; depends=[processx]; }; + pingr = derive2 { name="pingr"; version="2.0.3"; sha256="0qyqmv3anrdh9416rnq1l0mnhdwfl3x603rcg8kfwgwcb2zc0a9w"; depends=[processx]; }; pinnacle_data = derive2 { name="pinnacle.data"; version="0.1.4"; sha256="1sl36i2857b3xwx7iwgy8mkgjvz7nfa74ch1n8kcxbj59ib7mp8p"; depends=[tibble]; }; pinochet = derive2 { name="pinochet"; version="0.1.0"; sha256="0qy18mlw34cv9p7b3qb5bidxyq44k0hzj91hm5vp6wkjhik4knvi"; depends=[]; }; pinp = derive2 { name="pinp"; version="0.0.10"; sha256="1qah1b9chn237pfxisjsn6rr4h9h9zdqrk323c0k1qds7vm0xpra"; depends=[knitr rmarkdown]; }; - pins = derive2 { name="pins"; version="1.2.2"; sha256="0pmik7ixnyvjdc0r91hnmkhm5xh1ckw7s32x1p75cpyapb3bbarz"; depends=[cli digest ellipsis fs generics glue httr jsonlite lifecycle magrittr purrr rappdirs rlang tibble whisker withr yaml]; }; + pins = derive2 { name="pins"; version="1.3.0"; sha256="1jbry96ac19i2g61pdb2r997b450bgi98szi3dgwgvnhfq4sidjp"; depends=[cli digest ellipsis fs generics glue httr jsonlite lifecycle magrittr purrr rappdirs rlang tibble whisker withr yaml]; }; pinterestadsR = derive2 { name="pinterestadsR"; version="0.1.0"; sha256="0fjnb9kp3s3v7xp8cwrdljms6vwldq3n37lz5ly0j6wsw4p4ssx5"; depends=[jsonlite]; }; pinyin = derive2 { name="pinyin"; version="1.1.6"; sha256="0rw9qd5hbcmpi30vdqs31ijy37d8jlpqv0xif2nndb8cwj8x5bw2"; depends=[data_table splitstackshape]; }; pipe_design = derive2 { name="pipe.design"; version="0.5.1"; sha256="0r0szkdzifxmnnbr6675w8ij4zwqgxj3gwahc7a74mxr51f7qh8j"; depends=[ggplot2 gtools xtable]; }; @@ -14937,9 +15171,7 @@ in with self; { pipeliner = derive2 { name="pipeliner"; version="0.1.1"; sha256="1cyyd1bin89dh0zrhic3i541bj8nnaphg6jq2jqkhnxn2nvax11g"; depends=[]; }; piqp = derive2 { name="piqp"; version="0.2.2"; sha256="0cipmcbxfyply01kccv0bycip4lcg46s15g97fms8qijhpwi2n3c"; depends=[Matrix R6 Rcpp RcppEigen]; }; piratings = derive2 { name="piratings"; version="0.1.9"; sha256="0krrcf2bwicdf9fn657vkcjg5zliwi82hw3xmaqi46mdix8896gh"; depends=[ggplot2]; }; - pirouette = derive2 { name="pirouette"; version="1.6.9"; sha256="1khcfic386pyhxxyzv3c28krc6rpy334cdk1adawx7c87pyvsp16"; depends=[ape babette beastier beautier DDD forcats magrittr mauricer mcbette nodeSub phangorn phytools plyr pryr readr stringr TESS tibble tidyr tracerer xtable]; }; pisaRT = derive2 { name="pisaRT"; version="2.0.2"; sha256="1dpskdi4kd9zajj2pl7n686sd2w8kai7zilrwsrcfgl1dkfr1m82"; depends=[]; }; - pitchRx = derive2 { name="pitchRx"; version="1.8.2"; sha256="0lg0xab40r8wzrww986l5q9jkg1m83g4bhsbh0kr7f2rv90av662"; depends=[ggplot2 hexbin MASS mgcv plyr XML2R]; }; piton = derive2 { name="piton"; version="1.0.0"; sha256="1krf6zi238m275nxjlpyayv8y2drbgs2kg19dpkqm0lmlz5y5ar8"; depends=[Rcpp]; }; pivmet = derive2 { name="pivmet"; version="0.5.0"; sha256="15fq48grdsmgr3ximar8g45jhlbix6745965rfwl9sjwvwk1bb9q"; depends=[bayesmix bayesplot cluster corpcor MASS mclust mvtnorm rjags rstan runjags scales]; }; pivotaltrackR = derive2 { name="pivotaltrackR"; version="0.2.0"; sha256="141aaanb00qc3z4mdws42zhg7j6bcd2i1gp6nf6h6h7ikkmr0v0y"; depends=[curl httr]; }; @@ -14955,12 +15187,12 @@ in with self; { pk4adi = derive2 { name="pk4adi"; version="0.1.3.2"; sha256="0iq34byjg5hvmg282z6ppjag5df0y0adij1d1zn32966c1mq9ad2"; depends=[data_table]; }; pkdata = derive2 { name="pkdata"; version="0.1.0"; sha256="1kmcalidw2zidd6i8ds0k057b3187by2k8z6764va43d5garbbcv"; depends=[lubridate]; }; pkgKitten = derive2 { name="pkgKitten"; version="0.2.3"; sha256="10q0sa6l4phi04d7a2pdiy5pykg9y4c8sp3hhg6g19jbldvyhx2w"; depends=[]; }; - pkgbuild = derive2 { name="pkgbuild"; version="1.4.2"; sha256="1ic2zjcz29jbfwmsqsja4jjalzsz9ayac5zjz6nv482lsx2s4d13"; depends=[callr cli crayon desc prettyunits processx R6 rprojroot]; }; - pkgcache = derive2 { name="pkgcache"; version="2.2.0.1"; sha256="11zxq7d90x15hl6ri3z162qd1d5krjjanyzbfb9lcr645hix4c1k"; depends=[callr cli curl filelock jsonlite prettyunits processx R6 rappdirs]; }; + pkgbuild = derive2 { name="pkgbuild"; version="1.4.3"; sha256="0rci20gj2x0bgjy51jp8i4gld6arsigj7lhdkpwvdyhadjsyv0qm"; depends=[callr cli desc processx R6]; }; + pkgcache = derive2 { name="pkgcache"; version="2.2.1"; sha256="04g74p50dd2108jc7xll3glk0y4p3ciib8qa11956zfkj4h1bj9x"; depends=[callr cli curl filelock jsonlite processx R6]; }; pkgcond = derive2 { name="pkgcond"; version="0.1.1"; sha256="03a4blq3niw1mljzylamvmr3l43czqlww4i6n7zb0dlym9x8gs1w"; depends=[assertthat]; }; pkgconfig = derive2 { name="pkgconfig"; version="2.0.3"; sha256="0l1qph8zyi2sic3k2qcd7vlfl7rzfh1q7z7zvjkl5f7y1x2fy3rk"; depends=[]; }; pkgdepR = derive2 { name="pkgdepR"; version="1.0.0"; sha256="098fcj1s5rcjxmn57449f4zk9z2w4mqwxkvxxjazd1nj7wa45z8p"; depends=[dplyr magrittr scales viridisLite visNetwork]; }; - pkgdepends = derive2 { name="pkgdepends"; version="0.6.0"; sha256="196a15mx7gkzw3sqax8zplvscdjwal1ss03xpw95v86ijvvfgmpv"; depends=[callr cli curl desc filelock glue jsonlite lpSolve pkgbuild pkgcache prettyunits processx ps R6 rprojroot zip]; }; + pkgdepends = derive2 { name="pkgdepends"; version="0.7.1"; sha256="1a40gw1njb74hvij08a2dzq7sbnw5pslaxy5h7yfqh418pk0rixx"; depends=[callr cli curl desc filelock jsonlite lpSolve pkgbuild pkgcache processx ps R6 zip]; }; pkgdown = derive2 { name="pkgdown"; version="2.0.7"; sha256="0sim3fwayf4mpxqi8y9v7clnkzs56amhxsc75lc1k0zskn374f7k"; depends=[bslib callr cli desc digest downlit fs httr jsonlite magrittr memoise purrr ragg rlang rmarkdown tibble whisker withr xml2 yaml]; }; pkgfilecache = derive2 { name="pkgfilecache"; version="0.1.4"; sha256="1fr650yb4wjz6flq4f8p2p5bck5q4kkrhlhlwjn832payq9p4zsp"; depends=[downloader rappdirs]; }; pkggraph = derive2 { name="pkggraph"; version="0.2.3"; sha256="1isiywgm20rypc5qr03p0k7lis76zzd96x5ncbvia644d2n13brm"; depends=[curl data_table dplyr ggnetwork ggplot2 htmltools igraph intergraph Matrix network networkD3 plyr RColorBrewer tibble]; }; @@ -14970,8 +15202,7 @@ in with self; { pkgndep = derive2 { name="pkgndep"; version="1.99.3"; sha256="1llpizr2wkhfgygr9fd79qxym0xcrxfvz8w5n0kwvkvlq3iqid44"; depends=[BiocManager BiocVersion brew ComplexHeatmap GetoptLong GlobalOptions hash]; }; pkgnet = derive2 { name="pkgnet"; version="0.4.2"; sha256="0y1b5psn680agsnyiy8yr5m5pzb1y6wsa7gms43nwgj6jjmmvgvv"; depends=[assertthat covr data_table DT futile_logger glue igraph knitr magrittr R6 rlang rmarkdown visNetwork]; }; pkgnews = derive2 { name="pkgnews"; version="0.0.2"; sha256="0kqyy1fchpcyclxh6gly23pkfcf5b3hpsq1bhj4ykzbl4bc002h2"; depends=[]; }; - pkgsearch = derive2 { name="pkgsearch"; version="3.1.2"; sha256="0j0rckhv1lcwlc05ng637n1jv9yyxb6iws91i3mz9qnl5wis8061"; depends=[curl jsonlite parsedate prettyunits]; }; - pkgstats = derive2 { name="pkgstats"; version="0.1.1"; sha256="0cmpr27pfkykwp2dwflixwlz3pf16hajvf3ppwx73k2l492cp75c"; depends=[brio checkmate cpp11 dplyr fs igraph readr sys withr]; }; + pkgsearch = derive2 { name="pkgsearch"; version="3.1.3"; sha256="0b4w6sk65r77sfkvnyirxk0mpikqladi14pmc9sqhfcjbwvqgjx7"; depends=[curl jsonlite]; }; pkgverse = derive2 { name="pkgverse"; version="0.0.1"; sha256="0lsv7s9vsjvfpy19nxbdlbm363j01wwqqnrp0nlrik590hfq4w83"; depends=[devtools usethis]; }; pkmon = derive2 { name="pkmon"; version="1.1"; sha256="0na3z7v67gjpz15fkbf4yfwk4kiz7y79z2f7ccay8x855jzlbklx"; depends=[]; }; pkr = derive2 { name="pkr"; version="0.1.3"; sha256="1wi29nnljc096bazicrzvmdqachrwhgwcyq930jrbs6kk7hihrqz"; depends=[binr foreign forestplot rtf]; }; @@ -14989,7 +15220,7 @@ in with self; { plantecowrap = derive2 { name="plantecowrap"; version="1.0.4"; sha256="0syxf63xy5whzw03ys5cxyw7689mr7ihgmqddv53jb8rlbwm84p8"; depends=[ggplot2 minpack_lm plantecophys tidyr]; }; plaqr = derive2 { name="plaqr"; version="2.0"; sha256="15pdb57123m3cahvcsyrrvxjwxvs2f389yxip91gjxn68jf6cx1l"; depends=[quantreg]; }; plasma = derive2 { name="plasma"; version="1.0.0"; sha256="0vxgs0vicpd39ynlnc1xpvimb4327njqlasm9xc5ccffbxnywg36"; depends=[beanplot oompaBase pls plsRcox Polychrome survival viridisLite]; }; - plasso = derive2 { name="plasso"; version="0.1.1"; sha256="0ilfgc8yd4rgbh4g3536c7pfy6yjf7hl894cnjddqp9g0xk0annn"; depends=[doParallel foreach glmnet iterators Matrix]; }; + plasso = derive2 { name="plasso"; version="0.1.2"; sha256="09pc210wb98xnhm9wxsqvf217gysj9c2piwwhzxdp3lxb3my533x"; depends=[doParallel foreach glmnet iterators Matrix]; }; plater = derive2 { name="plater"; version="1.0.4"; sha256="0k2ha44ydcf180y44cgxd1haq55k96df39lahs6fji04imh75fii"; depends=[dplyr rlang]; }; platetools = derive2 { name="platetools"; version="0.1.5"; sha256="0qzq7r8ff27cwmxw649jvk9irm6ny2mz4ylmrpzdkahkskfb5arj"; depends=[ggplot2 RColorBrewer]; }; platowork = derive2 { name="platowork"; version="0.0.1"; sha256="09ps20lqli50nhhd3368fwf8cjsbshn428fbbbckbxnynxk5cwsy"; depends=[]; }; @@ -14997,7 +15228,7 @@ in with self; { play = derive2 { name="play"; version="0.1.3"; sha256="0ys8z84ap4v37ifz84q18dms5b0rqin6dvb6av0vl5rjpbgpvbhd"; depends=[dplyr forcats ggplot2 purrr stringr tibble tidyr worldfootballR]; }; plde = derive2 { name="plde"; version="0.1.2"; sha256="1g1b1sgyfxgfkjcr3sdkan8jd6r7yyi0izc83vyj11bdk08jx22h"; depends=[]; }; pleLMA = derive2 { name="pleLMA"; version="0.2.1"; sha256="1n6q4x8qv00j0hikzzr600xgikhr462zm73zllb9n0valhmzy18z"; depends=[dfidx mlogit]; }; - pleio = derive2 { name="pleio"; version="1.6"; sha256="0av1sl0fdn2ia7ddalbvidhcnsvs36iq618s1bknjw29y5yyq020"; depends=[Matrix rms]; }; + pleio = derive2 { name="pleio"; version="1.9"; sha256="1p2fksf026wv8cr6scdg9pclzrbamjf9nl1s0bpr7wrggjw67n0q"; depends=[Matrix rms]; }; pleiotest = derive2 { name="pleiotest"; version="1.0.0"; sha256="05mgz42wn1y7q8ffgvak22r3k40q9rv1qvpal8yycp83p7hdzg7v"; depends=[RColorBrewer Rcpp RcppArmadillo]; }; plfMA = derive2 { name="plfMA"; version="2.0"; sha256="14v3q4sv3inax3b1sp0i4scrz70ca9yphzikhx0z9dh2w5mggq0k"; depends=[gWidgets2 gWidgets2tcltk limma RColorBrewer tkrplot]; }; plfm = derive2 { name="plfm"; version="2.2.5"; sha256="0vcr1abzslsds0w4y2gyrrlbmqmxi5007km5fbj1xq2mrwjmngpp"; depends=[abind sfsmisc]; }; @@ -15005,7 +15236,7 @@ in with self; { plgraphics = derive2 { name="plgraphics"; version="1.2"; sha256="04i79hrsqqygiq64n7bqzfvrhl1c3k2j3y58zzbqq79v9vshjy7p"; depends=[chron lme4 MASS survival]; }; pliman = derive2 { name="pliman"; version="2.1.0"; sha256="0pgv7ayb78k481yd071hjvympikhdw6q8wqb9d5fazp9avmjlfz7"; depends=[doParallel foreach Rcpp RcppArmadillo sf stars terra]; }; plink = derive2 { name="plink"; version="1.5-1"; sha256="0rn2i9i8af9aq0xgxhpcdchs2952lq2d2sg8x3js0zi3vcml76k0"; depends=[lattice MASS statmod]; }; - plinkFile = derive2 { name="plinkFile"; version="0.1.0"; sha256="0803hp822v9rqh4h437q2nmab19yamc4dbyi6iimm67ykp0d5xss"; depends=[]; }; + plinkFile = derive2 { name="plinkFile"; version="0.2.1"; sha256="1vbhgwb08bbq4pmagrrn6zl1aw5cqcnfvicajj5c4y5qjm6y7s0m"; depends=[]; }; plinkQC = derive2 { name="plinkQC"; version="0.3.4"; sha256="0l5gf7wf33fhzby0n2qzph02v7an2gj2dji1i129hxsxqnynx7dy"; depends=[cowplot data_table dplyr ggforce ggplot2 ggrepel igraph optparse R_utils sys UpSetR]; }; plm = derive2 { name="plm"; version="2.6-3"; sha256="00scwxk8aw9s85ls3igspd7rk2jz3lk4irrgmy2crhpcbf3hpays"; depends=[bdsmatrix collapse Formula lattice lmtest MASS maxLik nlme Rdpack sandwich zoo]; }; pln = derive2 { name="pln"; version="0.2-2"; sha256="03jjmfr1dwz6p652y917g9rv2alyam9ws6xh9ig02d3w78b0rsv9"; depends=[]; }; @@ -15014,13 +15245,13 @@ in with self; { plot_matrix = derive2 { name="plot.matrix"; version="1.6.2"; sha256="1fsgzjcllrdlf55ww7dhyx1iaa59y2a6f1b1591j8m8in1fh7n6n"; depends=[]; }; plot3D = derive2 { name="plot3D"; version="1.4"; sha256="1h59zlsyzbjylaziwavppl9bjmnba4iiq34772y3dys6fqclajnh"; depends=[misc3d]; }; plot3Drgl = derive2 { name="plot3Drgl"; version="1.0.4"; sha256="1p8vypid2v1n255hlpxxlbnf1lyv2jywls0jfm7scfms5aisk1vd"; depends=[plot3D rgl]; }; + plot3logit = derive2 { name="plot3logit"; version="3.1.4"; sha256="176rzqxc5p7688a9dk54zhj6y0494s6p8cybxfsc042j168fbg8k"; depends=[dplyr ellipse forcats generics ggplot2 ggtern lifecycle magrittr purrr Rdpack stringr Ternary tibble tidyr tidyselect]; }; plotBart = derive2 { name="plotBart"; version="0.1.7"; sha256="10lkdrmc1f22m544w36ihpivicj1mw0x8cx1750ldyhphrd99za5"; depends=[bartCause dplyr ggdendro ggplot2 rpart tidyr]; }; plotDK = derive2 { name="plotDK"; version="0.1.0"; sha256="0lyhhc8yjxj3jhw72pn7i565z64mifi5iyc375yavs7axlcsl2nr"; depends=[dplyr ggplot2 mapproj plotly purrr rlang]; }; plotGMM = derive2 { name="plotGMM"; version="0.2.2"; sha256="1cgjajw3dprdlq9ri0gllbxcy33x311mbp9xdds8fgq6cs42ggyb"; depends=[amerika ggplot2 wesanderson]; }; plotHMM = derive2 { name="plotHMM"; version="2023.8.28"; sha256="12mxkd1m3ivk25sr5sg97q2l2v5m95pmfhbrhrp9jmmpqfr1l983"; depends=[Rcpp RcppArmadillo]; }; plotMCMC = derive2 { name="plotMCMC"; version="2.0.1"; sha256="0vxw6kbs1xvzi3sklxac9q1j4cbr8alr9c8fwifwyvpzpdk48ihf"; depends=[coda gplots lattice]; }; plotMElm = derive2 { name="plotMElm"; version="0.1.5"; sha256="0wwqzrpkmq9gzazdzlk62qig6vz43niada6fxh1wcsjqjwkcccgp"; depends=[ggplot2 interactionTest]; }; - plotRCS = derive2 { name="plotRCS"; version="0.1.4"; sha256="1n5xsbm97i8hfyslv1cfvp3hvkr23yvxfq8rxkryzxyfyklv86is"; depends=[ggplot2 rms]; }; plotROC = derive2 { name="plotROC"; version="2.3.1"; sha256="15jvn1dlx8qh5ghnkhqyc49frw6rp58ikpjs3ga8mjxrqyz7wb1g"; depends=[ggplot2 gridSVG plyr rlang shiny]; }; plotSEMM = derive2 { name="plotSEMM"; version="2.4"; sha256="0fircrayhz92zvkigkyb1zpn07bvssqs1ip15p926zj3rl77fqgy"; depends=[MplusAutomation plotrix plyr Rcpp shiny]; }; plotbb = derive2 { name="plotbb"; version="0.0.6"; sha256="0vyp558i0gvr9r3xldkd4ldkd6wx95w7xkkas8cyw0s7i13qqq60"; depends=[magrittr rlang scales]; }; @@ -15034,48 +15265,50 @@ in with self; { plotmo = derive2 { name="plotmo"; version="3.6.2"; sha256="0g1mznijbi1ggn4pk6sqxqjqlrznfcg57l6p2672vcaqqn73mqyd"; depends=[Formula plotrix TeachingDemos]; }; plotpc = derive2 { name="plotpc"; version="1.0.4"; sha256="1sf7n7mfyaijldm24bc8r8pfm8pp9cyaja7am14z2wpj2j9f9vyq"; depends=[]; }; plotprotein = derive2 { name="plotprotein"; version="1.0"; sha256="14kfb4xxpfp8klz31kb7cpc39636ax2cx2483vqqkciccb28f0ks"; depends=[ade4 plotrix plyr seqinr XML]; }; - plotrix = derive2 { name="plotrix"; version="3.8-2"; sha256="07xwq3505qb2yak7pfda22yqwifj6m78f8b5rm0ym74808qrawmv"; depends=[]; }; - plotrr = derive2 { name="plotrr"; version="1.0.0"; sha256="07ilqpa3ypqb2gpnq23r9v4kkfxz06mcak9si9adr9sf6c7gqwxz"; depends=[dplyr ggplot2]; }; + plotrix = derive2 { name="plotrix"; version="3.8-4"; sha256="1mp8mb79prgf5fzlaix4fvslr4q67hrzxqdv3kr7mik1mf9jv8p6"; depends=[]; }; plotscale = derive2 { name="plotscale"; version="0.1.6"; sha256="0h2g0rv1lh70nqmqydgg5swwnwmy08wbjajxyb1c2a716rad765j"; depends=[]; }; plotwidgets = derive2 { name="plotwidgets"; version="0.5.1"; sha256="1n2hls9qzr3z1xamggj4l48ksz5m51qn5x63flyk34bh0cyhadi1"; depends=[]; }; plpoisson = derive2 { name="plpoisson"; version="0.3.0"; sha256="15g5z07m0rf4hm6nynrb3bmsiakg7j790lsy30ksxswxrzwb9a1k"; depends=[]; }; - pls = derive2 { name="pls"; version="2.8-2"; sha256="1f7j47vyh26mp08730z21ssvia4df7rc8iiy5v3yclndc4wlqhi4"; depends=[]; }; + pls = derive2 { name="pls"; version="2.8-3"; sha256="1qvbwr567vxywpfsl7cb15lpwxpd04kf01nzk1v8dm4csf6p5sz6"; depends=[]; }; plsRbeta = derive2 { name="plsRbeta"; version="0.3.0"; sha256="0xikaxg1n298j8mm4vzzn7bfma1lmhak39aawfhp3ny3j1d8llr4"; depends=[betareg boot Formula MASS mvtnorm plsRglm]; }; plsRcox = derive2 { name="plsRcox"; version="1.7.7"; sha256="1fkbynjlwi070yshnqcmw2f331yzr61f1mvm5dbw3iwg9ldhcbwr"; depends=[kernlab lars mixOmics pls plsRglm risksetROC rms survAUC survcomp survival]; }; plsRglm = derive2 { name="plsRglm"; version="1.5.1"; sha256="1xpf4rz4midrl62yn39bq4ax5yl8h18kcyv2ckxis888yv5b1bqr"; depends=[bipartite boot car MASS mvtnorm]; }; plsVarSel = derive2 { name="plsVarSel"; version="0.9.10"; sha256="0aqg4vw16s80ajss8pjlmm9n2650srqi1v8rr7hz1mjpvzc9626g"; depends=[bdsmatrix genalg MASS MSQC mvtnorm pls praznik progress]; }; plsdepot = derive2 { name="plsdepot"; version="0.2.0"; sha256="0n2idfkgisbr6b04dcv47yy5f7j1ndxs53p5hinpghg8ikncbvwf"; depends=[]; }; plsdof = derive2 { name="plsdof"; version="0.3-2"; sha256="1bqk98f9zyi4hvna1sfx4fwiivndlwanjaphlqa03bg6bghcj60p"; depends=[MASS]; }; - plsgenomics = derive2 { name="plsgenomics"; version="1.5-2"; sha256="1pvb50nv6jc99bm2hsxpzazg26y49yi24wwwim5xcjj6j1szbip4"; depends=[boot fields MASS plyr reshape2 RhpcBLASctl]; }; + plsgenomics = derive2 { name="plsgenomics"; version="1.5-2.1"; sha256="1cn7ljq3nmvcm5g0ifhghm52sl25fyfalp7v7r8bl4iq9vblj2wa"; depends=[boot fields MASS plyr reshape2 RhpcBLASctl]; }; plsmod = derive2 { name="plsmod"; version="1.0.0"; sha256="1fyv2v3jmf1hdii9z477ijy5d9gvpc3jg9cyl9lbplgc18l2pd2b"; depends=[dplyr generics magrittr mixOmics parsnip purrr rlang tibble tidyr]; }; plsmselect = derive2 { name="plsmselect"; version="0.2.0"; sha256="044mwdqv5vw0apmx3yhn6xkdmw6baalvb8c6hhmawcs279kwi1m9"; depends=[dplyr glmnet mgcv survival]; }; plspm = derive2 { name="plspm"; version="0.5.0"; sha256="0r8c7pl54nj60176nbrzm6gmqjqk7jqi8r0d8kx4548xgniwc33s"; depends=[amap diagram shape tester turner]; }; pltesim = derive2 { name="pltesim"; version="1.0"; sha256="0mvqp8di2gwhd9wc9kvnnpxd3hkr9b9lj6g5qlkqcbrgkq6fjahs"; depends=[coreSim ggplot2]; }; plu = derive2 { name="plu"; version="0.3.0"; sha256="0s4k5vqgwbw7ayjhs2j8w9az7pn8km5hykkic1ii4jpdiy03c23g"; depends=[lifecycle]; }; - plugdensity = derive2 { name="plugdensity"; version="0.8-4"; sha256="0kj7vixfyg4nxq05xgmrhsjd56myz2s1jplhbkmq25kf2r9pb89y"; depends=[]; }; + plugdensity = derive2 { name="plugdensity"; version="0.8-5"; sha256="1gxjr6984p4awps5syzknzjyhpnjzqshv9c3cdx4xbkp1ax3xrw9"; depends=[]; }; plumber = derive2 { name="plumber"; version="1.2.1"; sha256="1k0y7ylc8bld16imn86g0i0dmxmr3kmh9ax4ys0yrxqzrvji7z3g"; depends=[crayon ellipsis httpuv jsonlite lifecycle magrittr mime promises R6 rlang sodium stringi swagger webutils]; }; plumberDeploy = derive2 { name="plumberDeploy"; version="0.2.1"; sha256="0icl35wck94scjyqw6di2sl6fq7zlvd8hm13fw79iqr0wyrich0r"; depends=[analogsea jsonlite lifecycle ssh]; }; - plumbertableau = derive2 { name="plumbertableau"; version="0.1.0"; sha256="1wkd15l5s7fs1nzyl83s41wbrx87yhklpw1fb6f3llrgbjn8rd77"; depends=[curl debugme glue htmltools httpuv httr jsonlite knitr later magrittr markdown plumber promises rlang stringi urltools]; }; + plumbertableau = derive2 { name="plumbertableau"; version="0.1.1"; sha256="1r4a7c5zagqm2qiyj2k8ywal0dg5kfx17ckkv1ks8wqzkpgr3c07"; depends=[curl debugme htmltools httpuv httr jsonlite knitr later magrittr markdown plumber promises rlang stringi urltools]; }; plumbr = derive2 { name="plumbr"; version="0.6.10"; sha256="1ncrqg8j4baqrjkd95fkdanaylwl1ygdr7xzc891gig3rknx0n1i"; depends=[objectSignals]; }; - plume = derive2 { name="plume"; version="0.1.0"; sha256="02fqwjppjah0pqfvgv02kmsbf2lcwwxp9k9v74l28nybnx9pmmwp"; depends=[dplyr glue jsonlite knitr purrr R6 readr rlang stringr tibble tidyr tidyselect vctrs yaml]; }; + plume = derive2 { name="plume"; version="0.2.1"; sha256="1nrv5gmhwm5fxd81d0smwdi9x35y2l54jlkparmi5hwh87lq2ld9"; depends=[dplyr glue jsonlite knitr lifecycle purrr R6 readr rlang stringr tibble tidyr tidyselect vctrs yaml]; }; pluralize = derive2 { name="pluralize"; version="0.2.0"; sha256="1s3jp41j8c03qb5zisj6m12ky7cz3n71d6p5apz0r0yn35inrhah"; depends=[V8]; }; pluscode = derive2 { name="pluscode"; version="0.1.0"; sha256="1j9yr5j6mb346a5dn7v9bsppgnxdj1ryimlla4a08rv7bjyq5i6q"; depends=[httr jsonlite]; }; + plutor = derive2 { name="plutor"; version="0.1.0"; sha256="09wwv47rigjl61q2c7bhq5qa2gghklzia5pqm4vwp66v3j7nb1pn"; depends=[baizer cli dplyr ggh4x ggplot2 ggsci magrittr purrr RColorBrewer repr rlang scales stringr tibble tidyr]; }; plyr = derive2 { name="plyr"; version="1.8.9"; sha256="00z1mvqisnzbbwcwax1gm9ilahpgp21kk4l7hqdz8fym27vygd8m"; depends=[Rcpp]; }; pm3 = derive2 { name="pm3"; version="0.1.9"; sha256="03q36qmq9hvkws5v79c39z698fjgfpyfxz5nx7g8diy6sj834mw6"; depends=[tableone]; }; + pmartR = derive2 { name="pmartR"; version="2.4.2"; sha256="13ss0j5ml8p3i79lz90ysgj3h6fk1cv5rlpzm5y6ddlp9af0i823"; depends=[BH data_table doParallel dplyr e1071 foreach ggplot2 glmpca magrittr mvtnorm parallelly patchwork pcaMethods plotly purrr RColorBrewer Rcpp RcppArmadillo rrcov stringr tidyr]; }; pmc = derive2 { name="pmc"; version="1.0.6"; sha256="1j2qiabq2qd4i8y28s87k0jxbbvv2yhjxmxsvvh9i8gzar17p5g7"; depends=[dplyr geiger ggplot2 ouch phytools tidyr]; }; pmcalibration = derive2 { name="pmcalibration"; version="0.1.0"; sha256="1zhg55jdf8jd92216waa2g18mvni8qh6j2idgf77k6mcwb63m9zw"; depends=[checkmate chk Hmisc MASS mgcv pbapply survival]; }; pmclust = derive2 { name="pmclust"; version="0.2-1"; sha256="0wldf0bj406qxmlc7hsbamiak7qcwf8ixng9dfkswh511m3p05jd"; depends=[MASS pbdMPI]; }; pmd = derive2 { name="pmd"; version="0.2.1"; sha256="14xra1d6qx6gxnpiwfsxz200qhmm7s4zy2j8h5kwbvbpnykdyr5c"; depends=[data_table enviGCMS igraph RColorBrewer]; }; - pmetar = derive2 { name="pmetar"; version="0.4.1"; sha256="03jh7x1nj3fgr9rl9f886sml2a14m7jlwad7vm1sw0pc7dqd04cd"; depends=[curl dplyr httr lubridate magrittr RCurl stringr tidyr]; }; + pmetar = derive2 { name="pmetar"; version="0.5.0"; sha256="14vz227mq1kjrmhb0gknx4alk0krl6aaj7rss3mm2hf832kr5724"; depends=[curl dplyr httr lubridate magrittr RCurl stringr tidyr]; }; pmhtutorial = derive2 { name="pmhtutorial"; version="1.5"; sha256="1hcw8hwpsivbhz86lnzy08q9n8vahnq8f7rmi4xkmg6b44582cqx"; depends=[mvtnorm Quandl]; }; pmlbr = derive2 { name="pmlbr"; version="0.2.1"; sha256="06kac7h4skccs48ixyjnxxry38dci9cgkckfvkpzaqhzzlbvmn0g"; depends=[FNN]; }; pmledecon = derive2 { name="pmledecon"; version="0.2.1"; sha256="10yry425y2ghcnp3mrjharf4blcqvwnxsm7kz90mzfq91qg4q5lv"; depends=[rmutil splitstackshape]; }; pmml = derive2 { name="pmml"; version="2.5.2"; sha256="1faad5yqyh6dx40056w74vlyw4wxjgh41jv8b2vf2gh26laf22kk"; depends=[stringr XML]; }; pmmlTransformations = derive2 { name="pmmlTransformations"; version="1.3.3"; sha256="0315kb5x04pidpzr04yaxyynp0mz4ilzp7vkspq4agjkds5hyc88"; depends=[]; }; - pmparser = derive2 { name="pmparser"; version="1.0.17"; sha256="0yilwy72c4qfk0xs9wjmpggmsm5ng551sdw4531ycw5qb226z7mg"; depends=[curl data_table DBI foreach glue iterators jsonlite R_utils RCurl withr xml2]; }; + pmparser = derive2 { name="pmparser"; version="1.0.19"; sha256="1aqcjl081b5v8gkd2i171vf69f549v2s91rhnyxn3lx1qlb4j8da"; depends=[curl data_table DBI foreach glue iterators jsonlite R_utils RCurl withr xml2]; }; pmr = derive2 { name="pmr"; version="1.2.5.1"; sha256="14m3y1sywnd77gyifz2nv5q7h85f81wl5c8glvc100zgljvbgwvc"; depends=[]; }; - pmsampsize = derive2 { name="pmsampsize"; version="1.1.2"; sha256="0msbkjpzssgkc4ndx9s1rb8mgg07bx7fdlq48j5s8ak8n1gwdkyk"; depends=[]; }; + pmsampsize = derive2 { name="pmsampsize"; version="1.1.3"; sha256="0sch7inlg9lvb9y8cf3gqwmgxwn2zi3xw3fp7rnz05978f8fa088"; depends=[]; }; pmultinom = derive2 { name="pmultinom"; version="1.0.0"; sha256="0p2amb3y4jl24r21fii1qpmdbn5pfgywrx8k7x1jxpg49rk7k0rp"; depends=[fftw]; }; + pmvalsampsize = derive2 { name="pmvalsampsize"; version="0.1.0"; sha256="1wrdid3rcl7h7sdgm2gxkmcb4vdzg0krkmb09bh50y7nnrq70i22"; depends=[pROC]; }; pmwg = derive2 { name="pmwg"; version="0.2.0"; sha256="1f1r66ml24ys7nx5558c189a4gcaqkr16y87dmi4ravick9l5yfi"; depends=[checkmate coda condMVNorm MASS MCMCpack mvtnorm]; }; pmxTools = derive2 { name="pmxTools"; version="1.3"; sha256="1is56is0xg9syfwma90wqp7rxbgcv36qcpmcxnz0dlf7ypnvqsak"; depends=[chron data_tree dplyr ggdist gghalves ggplot2 magrittr MASS patchwork PKNCA scales stringr tibble xml2]; }; pmxcode = derive2 { name="pmxcode"; version="0.1.1"; sha256="0gzx142xi03mydlrzjzvl378jcqpp7a69p0j6zd8dggc4zva8c2q"; depends=[bslib config dplyr glue golem htmltools htmlwidgets jsonlite magrittr markdown pillar rclipboard readr rhandsontable rlang shiny shinyAce shinyBS shinyFiles tidyr xfun]; }; @@ -15085,7 +15318,6 @@ in with self; { pocketapi = derive2 { name="pocketapi"; version="0.1"; sha256="0n4fyx4ldm14zy3pz7gygwhahi3p25misvxlmy8l9kqqr51fg26a"; depends=[dplyr glue httr jsonlite magrittr purrr tibble usethis]; }; pocrm = derive2 { name="pocrm"; version="0.13"; sha256="0d4iggxjbl95fz872q9v1wr30nga39sdd5dvwa2zrrm73ak81cz3"; depends=[dfcrm nnet]; }; podcleaner = derive2 { name="podcleaner"; version="0.1.2"; sha256="1r8mvf8bw329n3ifi2dyy4220nbij2rgkvq1xlqzynxf8qadxbrl"; depends=[dplyr fuzzyjoin magrittr progress purrr readr rlang stringi stringr tibble tidyr]; }; - poems = derive2 { name="poems"; version="1.1.0"; sha256="123sq2ixm8qzj6jc95skwl6rr4hiy7dcf34x4mrhqv5sf7k41yzs"; depends=[abc doParallel foreach gdistance geosphere lhs metRology R6 raster trend]; }; pogit = derive2 { name="pogit"; version="1.3.0"; sha256="02h8j7bfayigq9az46mvi7n918p99533mnijnz1nkzrdi2v0x824"; depends=[ggplot2 logistf plyr]; }; poibin = derive2 { name="poibin"; version="1.5"; sha256="1sxryvwwz6ldsnkzdy56p8c895s5yvpcai9ndyjv1x5q3l05wf9v"; depends=[]; }; poilog = derive2 { name="poilog"; version="0.4.2"; sha256="0dk2c65b7aac2ak3ajgh3wa2jhqyfv1qp90flw8xcx3f5w5gyv7s"; depends=[]; }; @@ -15093,7 +15325,6 @@ in with self; { pointblank = derive2 { name="pointblank"; version="0.11.4"; sha256="08ljvbwzykj48hnslw3haqn1ibs6fdfh40i5vypblzvwa32j7zvj"; depends=[base64enc blastula cli DBI dbplyr digest dplyr fs glue gt htmltools knitr magrittr rlang scales testthat tibble tidyr tidyselect yaml]; }; pointdensityP = derive2 { name="pointdensityP"; version="0.3.5"; sha256="0n7p3b77m47avbr7n85knf31m9rlp43mdl3748ysj6wvxvhnivx4"; depends=[data_table]; }; pointr = derive2 { name="pointr"; version="0.2.0"; sha256="1qfxcyzi2sa49x00hidz054njj9mm7gkhv99faafb9x4gp3pcq0v"; depends=[stringr]; }; - poio = derive2 { name="poio"; version="0.0-4"; sha256="12d47hn9rsx2n0fl107dpswfklnh8nkm0kspcxf7yfljayvxr474"; depends=[assertive_base assertive_files assertive_properties assertive_sets assertive_strings assertive_types devtools digest dplyr magrittr purrr R6 stringi tibble whoami]; }; poisDoubleSamp = derive2 { name="poisDoubleSamp"; version="1.1.1"; sha256="0s0x3x3f620752ggai0jlkgrg1mh53giyh92q2lpwyvawyg8nyav"; depends=[Rcpp]; }; poisFErobust = derive2 { name="poisFErobust"; version="2.0.0"; sha256="1i6y3745i385y3r45i0xk7ciw1k6brmn709k5qhx8xphq0k4an5n"; depends=[data_table glmmML]; }; poisbinom = derive2 { name="poisbinom"; version="1.0.1"; sha256="0mjxg0s3nck7qrmq4bbrhwxfwr6fqml54s9k8q1mkfzlifa7qyf7"; depends=[Rcpp]; }; @@ -15101,24 +15332,23 @@ in with self; { poisson_glm_mix = derive2 { name="poisson.glm.mix"; version="1.4"; sha256="02mnrrynlmcbcywmgm829kajlixwr91aj49d43pkfc3yxcnj815w"; depends=[]; }; poissonMT = derive2 { name="poissonMT"; version="0.3-5"; sha256="14qkc8qz3423b13gp6gsp8cbb1nv9wwjjfa4i9zc15qy5i99ha26"; depends=[checkmate MASS robcbi robustbase]; }; poissonreg = derive2 { name="poissonreg"; version="1.0.1"; sha256="1hlp6lvag9a3yv1iapcs3r14w6y5pqdb0zwlhjw88g72amwp7g43"; depends=[dplyr generics glue parsnip purrr rlang tibble tidyr]; }; - poistweedie = derive2 { name="poistweedie"; version="1.0.1"; sha256="0236cz8fn3la7df8mk1la8hmr0zzjc1majnq8p0c8grma833j6kp"; depends=[]; }; + poistweedie = derive2 { name="poistweedie"; version="1.0.2"; sha256="0afr2rzn1bdbfk2ayzrxp62zwghlpml4lvhv7kixkk8a4raxv4h3"; depends=[]; }; pokemon = derive2 { name="pokemon"; version="0.1.3"; sha256="13j0a893w803brmwsa98x04mmz35l2vmlj1i86m0qxbjb4ysnkbb"; depends=[]; }; - poker = derive2 { name="poker"; version="0.8.8"; sha256="14ik77440z22k4kwq0p1fn7adzi0p8mh8j8hd7ayinvrab4b5r85"; depends=[]; }; - polaroid = derive2 { name="polaroid"; version="0.0.1"; sha256="0m3jbiz4n7mgbbdkd28m6dqsclyjcgshpxd6ws8df7zchx7fch07"; depends=[argonDash argonR colourpicker ggplot2 hexSticker png shiny shinyWidgets]; }; + polaroid = derive2 { name="polaroid"; version="0.1.0"; sha256="11i1xxvj3ik8kjpm8q1ind3qkwrgyhv0sdcynwj4wld2n6i1v2v5"; depends=[shiny]; }; policytree = derive2 { name="policytree"; version="1.2.2"; sha256="1xkki4x9s5h4261rdjnafaxwz7baa8pv8gzysbb3cy1gjm52sq4r"; depends=[BH grf Rcpp]; }; polimetrics = derive2 { name="polimetrics"; version="1.2.1.14"; sha256="0zzqzcfmvb6a9lav5sdgzhx4637r068q3kyjqk1ykdjg2d7s7lrv"; depends=[car dplyr formula_tools ggplot2 gplots MASS purrr rlang rstatix stringr tidyverse]; }; poliscidata = derive2 { name="poliscidata"; version="2.3.0"; sha256="1ywfhksc6gcc2xk5lp6s8nn4wib92sv7p3wq92dzabf75q6mscix"; depends=[abind car descr gplots Hmisc plotrix plyr survey weights xtable]; }; polished = derive2 { name="polished"; version="0.8.1"; sha256="0qn7zlxw7jr0apvn23a6x00xn5fbg2c2hg6713biwsi7iqhb0amc"; depends=[automagic desc digest dplyr DT htmltools httr jose jsonlite lubridate otp purrr rlang rmarkdown shiny shinycssloaders shinydashboard shinyFeedback shinyjs shinyWidgets stringr tibble tidyr uuid yaml]; }; polite = derive2 { name="polite"; version="0.1.3"; sha256="0k0zqmm1zd0kgmqns41gxfa8pak1k11c3zbvsr0xbqc6x1bc5xyj"; depends=[httr magrittr memoise ratelimitr robotstxt rvest usethis]; }; - politeness = derive2 { name="politeness"; version="0.9.2"; sha256="0lj5jgw9ldnidkbbg8k9ma2xxg3hcaaiq6dcmp8rc2mqp204irff"; depends=[data_table ggplot2 glmnet quanteda spacyr stringi stringr textir tm]; }; + politeness = derive2 { name="politeness"; version="0.9.3"; sha256="1p3d7xyyx79cq3w5qg49fc25i7v2qhfqsr938jmrnvrx5ds42i40"; depends=[data_table ggplot2 glmnet quanteda spacyr stringi stringr textir tm]; }; politicsR = derive2 { name="politicsR"; version="0.1.0"; sha256="1msf394i70g9k2lcfmp0drq8qm138wdhbf9qaa5342z4wcasmvdv"; depends=[ineq]; }; polle = derive2 { name="polle"; version="1.3"; sha256="1b8hbps8nmvvb8hbcd8y6zs5wc18p9rw878s4nf9q31zi3k33h56"; depends=[data_table DynTxRegime future_apply lava policytree progressr SuperLearner survival targeted]; }; pollen = derive2 { name="pollen"; version="0.82.0"; sha256="0vmggbvacpbdz4zvn3cinip1b0ac44vgbydmsk6698hwgx9iwmfp"; depends=[dplyr lubridate purrr]; }; pollimetry = derive2 { name="pollimetry"; version="1.0.1"; sha256="09zmcwlgzl4fnkdg2m424ibv3izzrm595c7pi4mc3bd1g8sa2ypn"; depends=[brms repmis]; }; pollster = derive2 { name="pollster"; version="0.1.6"; sha256="0zjyy36mapg1c3fj8cav43f1x1aqg3ysf74fgsiiwqwjhdm08hpx"; depends=[dplyr forcats labelled rlang stringr tidyr]; }; - polmineR = derive2 { name="polmineR"; version="0.8.8"; sha256="1ih1llbj7grr8rxzrjbkyx1sxncy94gvsjnblzs7waaqdn44nsm2"; depends=[cli data_table DT fs jsonlite knitr lifecycle magrittr Matrix pbapply RcppCWB rlang slam stringi tm xml2]; }; - polspline = derive2 { name="polspline"; version="1.1.23"; sha256="1qa9j7s09yzi65fav27zxc1w1wxwsmgjz8a8ghy7hhi5f3gvsqw3"; depends=[]; }; - polyCub = derive2 { name="polyCub"; version="0.8.1"; sha256="09a4n69f9m5y57wkxlhwn5xfhzpqrcyzfc6n5zywn5jkj5h7wijl"; depends=[sp]; }; + polmineR = derive2 { name="polmineR"; version="0.8.9"; sha256="0cxjy3w4k52kdjf66yysvd1yd96rv5xrzqjrkdvl4wrhxvla3202"; depends=[cli data_table DT fs jsonlite knitr lifecycle magrittr Matrix pbapply RcppCWB rlang slam stringi tm xml2]; }; + polspline = derive2 { name="polspline"; version="1.1.24"; sha256="0mal78f79jl6cj02xabv9vqf88m4iiadmgiv3qliv117cxkc6hb6"; depends=[]; }; + polyCub = derive2 { name="polyCub"; version="0.9.0"; sha256="0rdcb0jdfjxj09vrhsgf7jy65fffldi2dp32gh04c0mhbi38bhx9"; depends=[sp]; }; polyMatrix = derive2 { name="polyMatrix"; version="0.9.16"; sha256="13amrjl0nsyz6d9c9xxgnlkhdiicy8rx27ds5k47r8x48386vz14"; depends=[Matrix polynom]; }; polyRAD = derive2 { name="polyRAD"; version="2.0.0"; sha256="12qlws0d6s94rand1a7azd7yv22qzij1aqmhrvw4az0y7jy2wka4"; depends=[fastmatch pcaMethods Rcpp stringi]; }; polySegratio = derive2 { name="polySegratio"; version="0.2-5"; sha256="0djw49mbhd7x6jr0f5qkb9akw3fw3ax4w9xv8iwa5f65q5gbxpdf"; depends=[gdata]; }; @@ -15127,21 +15357,22 @@ in with self; { polyapost = derive2 { name="polyapost"; version="1.7"; sha256="1inq3b8qq17w5zx2lrkrxjzb7drfajsp4qgy0194971m6x2j4cfx"; depends=[boot rcdd]; }; polyclip = derive2 { name="polyclip"; version="1.10-6"; sha256="0qwb5w1ishbhg1nhdp8985ddvcs7ljdyrbv059hx576xmgni6brw"; depends=[]; }; polycor = derive2 { name="polycor"; version="0.8-1"; sha256="0285rvx8238qp8dix0jq0cqq7ks8h6cjwsscbc7dx4n9nph56pzh"; depends=[admisc Matrix mvtnorm]; }; - polyglotr = derive2 { name="polyglotr"; version="1.2.1"; sha256="0r4n8y7wqfgxnq8jyyidrdslmffwyap671wrxqbnpm5jn7m6m07q"; depends=[dplyr httr magrittr purrr rlang rvest stringr urltools]; }; + polyglotr = derive2 { name="polyglotr"; version="1.3.1"; sha256="0nmkrb7hhldn35jmh12pikba9xjpz0afjh0irqdgck9z495pyhbp"; depends=[dplyr httr magrittr purrr RCurl rlang rvest stringr tibble urltools]; }; + polyhedralCubature = derive2 { name="polyhedralCubature"; version="1.1.0"; sha256="1la8cj261c4vshr4yd3vgplzv1ykrkgvlwrjm49fgzh142rk59gc"; depends=[gmp magrittr Matrix ompr qspray rcdd SimplicialCubature spray tessellation]; }; polylabelr = derive2 { name="polylabelr"; version="0.2.0"; sha256="01b2v0l5g8nxwbd6nwqv8ahypgh6gfhd4qabg75brlj7z1iyfzf2"; depends=[Rcpp]; }; - polymapR = derive2 { name="polymapR"; version="1.1.3"; sha256="0j7f5rdkkwc0y15jjgik9bhkrwypafmm34h7kjkwa806dzgq8xsv"; depends=[doParallel foreach igraph knitr MDSMap]; }; + polymapR = derive2 { name="polymapR"; version="1.1.5"; sha256="0mc4gblzznd0md740bzrd3cpk5ikf3dms72iqq18g76yc2y8iy2r"; depends=[doParallel foreach igraph knitr MDSMap]; }; polynom = derive2 { name="polynom"; version="1.4-1"; sha256="0y4j07syjwpnq5w6a1d90z6h1hjzijmm42pq0f8jk2vcn5xxn7mw"; depends=[]; }; polypharmacy = derive2 { name="polypharmacy"; version="1.0.0"; sha256="1rimhy7z5xglkxfp3yh4vqm5g075n8g09nl4a8nxxf6cyl504gcv"; depends=[data_table doParallel foreach itertools lubridate stringr]; }; polypoly = derive2 { name="polypoly"; version="0.0.3"; sha256="1xd5s2gj3x47dvq02lkjih6rbvmjh3hwybzwsvnq3dxvcj9jjkyw"; depends=[ggplot2 reshape2 rlang tibble]; }; - polyqtlR = derive2 { name="polyqtlR"; version="0.0.9"; sha256="0j879bvks6ldx53yfmac94p5n4p79pyq29ljdzbvajmxq5b57vf8"; depends=[abind doParallel foreach Hmisc knitr nlme RColorBrewer Rcpp RcppArmadillo reshape2]; }; + polyqtlR = derive2 { name="polyqtlR"; version="0.1.1"; sha256="0yz27785cfw50sw6nniiqmdggji502wh84zcvqf31wzznjryy9v5"; depends=[abind doParallel foreach Hmisc knitr nlme RColorBrewer Rcpp RcppArmadillo reshape2]; }; polyreg = derive2 { name="polyreg"; version="0.8.0"; sha256="0fh4yp9b35ag6snz6l85xmn0pc18qn0jggzsyk12g05dfb6r6qvw"; depends=[nnet]; }; polysat = derive2 { name="polysat"; version="1.7-7"; sha256="0fpdy2yya91hz1n24j4mqiggrjjihddaia5p24phgbkw8rxqqp40"; depends=[Rcpp]; }; polywog = derive2 { name="polywog"; version="0.4-1"; sha256="02qk1cyvkd77mwlvhj1zzzi0bmy7qxz29j2v730wp7rz4w7h5x5n"; depends=[foreach Formula glmnet iterators Matrix miscTools ncvreg Rcpp stringr]; }; pomcheckr = derive2 { name="pomcheckr"; version="0.1.1"; sha256="0fm2v388ya7v4vrb5rvilghlf49d15jlwz0isf95ldr81a55m9ij"; depends=[assertthat dplyr ggplot2 magrittr rlang stringr tidyr]; }; - pomdp = derive2 { name="pomdp"; version="1.1.2"; sha256="0v4vj5xiivh1z1jc93zwijhdfjs7lnb81szlgsmn9byc31ydg3br"; depends=[foreach igraph Matrix pomdpSolve processx Rcpp]; }; + pomdp = derive2 { name="pomdp"; version="1.1.3"; sha256="0fw8phi09c7i301v5dankplnhx0i099npsdc9b2hfqif5ykhh7f2"; depends=[foreach igraph Matrix pomdpSolve processx Rcpp]; }; pomdpSolve = derive2 { name="pomdpSolve"; version="1.0.4"; sha256="0ywiqry0df1cjy3k8r3rzpd42rmnn578ih03qvp8qydq66bdrh3b"; depends=[]; }; pomodoro = derive2 { name="pomodoro"; version="3.8.0"; sha256="1y7a6097jlrrgqkxhb43n5nahf4m814inhmkm1495w0k5q1zmraf"; depends=[caret gbm ipred pROC randomForest tibble]; }; - pomp = derive2 { name="pomp"; version="5.4"; sha256="1qk540101qs007klwjssddvfcpckbhd4ic2rpial9fb4r4v578z7"; depends=[coda data_table deSolve digest mvtnorm]; }; + pomp = derive2 { name="pomp"; version="5.5"; sha256="0l7q4xpccnfl2gnxbsnygwig31432y5lal54n8hsx69n1byv96r9"; depends=[coda data_table deSolve digest mvtnorm]; }; pompom = derive2 { name="pompom"; version="0.2.1"; sha256="09jy4lrb2p71yk604ndfhqfz6znlc3bq72k42f0d1i1a8g3by8h6"; depends=[ggplot2 lavaan qgraph reshape2]; }; pompp = derive2 { name="pompp"; version="0.1.3"; sha256="0svlzhsm1kfwgjpx2cas63jm8v5b9cxlksipv758vxlnc3jiarvk"; depends=[coda geoR Rcpp RcppEigen RcppProgress]; }; pooh = derive2 { name="pooh"; version="0.3-2"; sha256="0qwa5j91aypasvsf4xcfbl6lz7llawdr38jiflzmfak2ad72rv7j"; depends=[]; }; @@ -15152,7 +15383,7 @@ in with self; { poolfstat = derive2 { name="poolfstat"; version="2.2.0"; sha256="17wama4lxl7q2i9j2v15kn33i2lszrsyim9qj8dihhx9r6p9vdls"; depends=[ape data_table DiagrammeR doParallel foreach Matrix nnls progress Rcpp RcppProgress Ryacas zoo]; }; pooling = derive2 { name="pooling"; version="1.1.2"; sha256="19mrzax3k35fhgjpnlrigf0nscsdl3xb7k82s5q472k4bcz7ya5b"; depends=[cubature data_table dplyr dvmisc ggplot2 ggrepel mvtnorm numDeriv]; }; poolr = derive2 { name="poolr"; version="1.1-1"; sha256="1y8bish2s96b42xsld0x1nrjz9dzqhdr2w95vdpfymq7mg05d1ry"; depends=[mathjaxr]; }; - poorman = derive2 { name="poorman"; version="0.2.6"; sha256="0x1pk00ca7wjxnqfh1jphgsxcrq37s0c1nawv52yh5qgc4z0m3ij"; depends=[]; }; + poorman = derive2 { name="poorman"; version="0.2.7"; sha256="1amlcbgfnm6yh7lmlzhs7aalv4mdm2ir3s2kpx33ppnz7hlii508"; depends=[]; }; pop = derive2 { name="pop"; version="0.1"; sha256="0hbxdrkasb69x7ipddvyrzl5vvc7dd6rzj1vy7v3chg3rzgq89cj"; depends=[igraph MASS]; }; pop_lion = derive2 { name="pop.lion"; version="1.0.1"; sha256="1rj95wwcxvsfd1smd21717y9c0672a8vnpnbdsa63pxbzdxc4kaj"; depends=[abind testthat]; }; pop_wolf = derive2 { name="pop.wolf"; version="1.0"; sha256="113l9skpggjxjpwxibfp611z2gnjikfqh6kmj6in52sn9q4yqv83"; depends=[abind]; }; @@ -15167,7 +15398,7 @@ in with self; { popkin = derive2 { name="popkin"; version="1.3.23"; sha256="07wlja7c96az0d82c3b0m1kmc04sbgp73asbaks26jwvjw4vmby5"; depends=[ape RColorBrewer]; }; poppr = derive2 { name="poppr"; version="2.9.4"; sha256="14a756dx82l19bswrjq8v64v9py4mqf039y9gw5xrkr13p9jiy56"; depends=[ade4 adegenet ape boot dplyr ggplot2 igraph magrittr pegas polysat progressr rlang shiny vegan]; }; popstudy = derive2 { name="popstudy"; version="1.0.1"; sha256="09lavka4hr4f8m2j8wqvd4pqxbxhclac1p2f2vq15xk7n4xfbhw3"; depends=[correlation corrplot corrr demography DescTools dplyr forecast ggplot2 ggpubr here Hmisc lubridate magrittr moments rainbow rcompanion Rdpack scales stringr tidyr]; }; - poptrend = derive2 { name="poptrend"; version="0.1.0"; sha256="0hypxpb18azg6q1mqrphbx3x262h9ybwhlkb8fyd6vr7jjb5wn3h"; depends=[mgcv]; }; + poptrend = derive2 { name="poptrend"; version="0.2.0"; sha256="1vwz6j318x6p92mksnn19jbx8667pqdc7nxgm6qa87kprsrymz6s"; depends=[mgcv]; }; populR = derive2 { name="populR"; version="0.2.1"; sha256="1j0ip93pd5sq2rcqd0pw5c0nmi1pjjaxi5k4xk97kgwnqcq5ib7n"; depends=[dplyr Metrics osmdata rlang sf units usethis]; }; population = derive2 { name="population"; version="0.3"; sha256="00kagbz4pr4c5z6cb5w4y9nlbjzaa2awc45z2cvrivng76376br3"; depends=[abind]; }; populationPDXdesign = derive2 { name="populationPDXdesign"; version="1.0.3"; sha256="0p73ddv3j1s1vs4j3axnsf39n626qjv0w1qlq9p7km4s6729bhgv"; depends=[devtools ggplot2 plyr roxygen2 shiny shinycssloaders]; }; @@ -15178,6 +15409,7 @@ in with self; { portfolio = derive2 { name="portfolio"; version="0.5-2"; sha256="13w8gyaphg0qspjl6d0jh0jf3wvz4agy8vzkriba0k59qhdbi52f"; depends=[lattice nlme]; }; portfolio_optimization = derive2 { name="portfolio.optimization"; version="1.0-0"; sha256="1rdhwffsjc1pa1qq7rqy6dwk8yrcblkmijz94p2w7sf2v4jmwxxr"; depends=[magrittr MASS modopt_matlab xts]; }; portfolioBacktest = derive2 { name="portfolioBacktest"; version="0.4.1"; sha256="1qf7bbf3frivp0q55h3fj9ki2igaa6djpg3zv1x6hh53nl25dvbb"; depends=[digest evaluate ggplot2 pbapply PerformanceAnalytics quadprog quantmod R_utils rlang xts zoo]; }; + portion = derive2 { name="portion"; version="0.1.0"; sha256="0sqmv5f0jsbm4p9l02cm2zf8jbjxxyb9hb0cmry65jlnhy4axbm3"; depends=[]; }; portn = derive2 { name="portn"; version="1.0.0"; sha256="1n759fwk2lwz8nqrc04r3720pffyhinmz2x83g5553ywxs0ds4da"; depends=[Rsolnp]; }; portsort = derive2 { name="portsort"; version="0.1.0"; sha256="0swl39dn7lzwvps18bva4l64a441gkf6lbwcwrhlf93f1ardvxji"; depends=[xts zoo]; }; portvine = derive2 { name="portvine"; version="1.0.2"; sha256="1lhr4nxlr47sr77gk1q790rl7lwxs58gsaacl9rq7lyw24h8w7rs"; depends=[BH checkmate data_table dplyr dtplyr future_apply kde1d ppcor Rcpp RcppEigen RcppThread rlang rugarch rvinecopulib tidyr wdm]; }; @@ -15187,17 +15419,16 @@ in with self; { postcards = derive2 { name="postcards"; version="0.2.3"; sha256="0kc8nbrqw5h14qw47rxl20yz9q0s8gk2g3lg7kcgsx7f1q514qsw"; depends=[rmarkdown rstudioapi]; }; postdoc = derive2 { name="postdoc"; version="1.2.2"; sha256="1d9d82z72jh2g777pzxfnav7nq14c4q93jiwcsp3plvgfkj0sfl8"; depends=[curl jsonlite katex prismjs xml2]; }; posterdown = derive2 { name="posterdown"; version="1.0"; sha256="13plrrnylw3yldm0md1gr5drccfjk9f2wwlhz6lrmb3px7w5nqs0"; depends=[pagedown rmarkdown yaml]; }; - posterior = derive2 { name="posterior"; version="1.4.1"; sha256="1lsqpczf8ll8m1a99kwmxdjm8wpavlqw88qha82s3438ipx5729b"; depends=[abind checkmate distributional matrixStats pillar rlang tensorA tibble vctrs]; }; + posterior = derive2 { name="posterior"; version="1.5.0"; sha256="1pp233ddrs116w1rmp3khhmibjf6l021b1x79k6z48g3r9zk042a"; depends=[abind checkmate distributional matrixStats pillar rlang tensorA tibble vctrs]; }; postinfectious = derive2 { name="postinfectious"; version="0.1.0"; sha256="1v327zxxiwc1cdksk6s39lkkgck5dxg169pp3jiqmm7xs35dcl6y"; depends=[]; }; postlightmercury = derive2 { name="postlightmercury"; version="1.2"; sha256="1345ckp50jplcdqp3a250c6mhapqh9322jzpxj5dyqmbg2nmgp9i"; depends=[crul jsonlite purrr rvest tibble xml2]; }; postlogic = derive2 { name="postlogic"; version="0.1.0.1"; sha256="11bpmfn375zpyg90dh44h86cvppzri1smmkn26jyydqjz74f4q9w"; depends=[]; }; postpack = derive2 { name="postpack"; version="0.5.4"; sha256="01h2la7ih7s9110162apbqjjn2i6il5m4300ga0r44r0fyw340a5"; depends=[abind coda mcmcse stringr]; }; potential = derive2 { name="potential"; version="0.2.0"; sha256="1zq82jlqxmz1cjg0wi1r7cqxq32f3dk6gzx11fnf5mfy44613vl2"; depends=[doParallel foreach mapiso sf]; }; potions = derive2 { name="potions"; version="0.2.0"; sha256="01dzgcapd21x88kp16pj0sqkx9r6xyfa9c6kxlna4vfpkwk99sh7"; depends=[jsonlite lobstr purrr rlang rrapply stringi yaml]; }; - potools = derive2 { name="potools"; version="0.2.2"; sha256="1vn99kh9cpicljs3caz3pw12azm19sx8q9nybk0xfffrldmz6r2q"; depends=[data_table]; }; + potools = derive2 { name="potools"; version="0.2.4"; sha256="0bfjqkl387s262m1xxq3li2s894mz8nfa3m9v8dcrf20gq40as6q"; depends=[data_table glue]; }; potts = derive2 { name="potts"; version="0.5-11"; sha256="1sm2y2nv3hpqmcshza74yy9awg7ygp6fna6pkzvqv4cakwvvxnck"; depends=[]; }; pould = derive2 { name="pould"; version="1.0.1"; sha256="0hr6j08whbc1jydz20rg0cphfiwx4pyrav49w9qs9dkcaqrpid7l"; depends=[BIGDAWG gap ggplot2 haplo_stats reshape2]; }; - povmap = derive2 { name="povmap"; version="1.0.0"; sha256="0nqb3ispvljpdb05ps7jwds33n4db2hw4ym5b4ipc20rhdj3g4mr"; depends=[bestNormalize boot formula_tools ggplot2 gridExtra HLMdiag MASS moments MuMIn nlme openxlsx parallelMap readODS reshape2 saeRobust spdep stringr survey]; }; pow_int = derive2 { name="pow.int"; version="1.3"; sha256="0rpv14ni7ikhy7rd8z04xy5mvmnagj1ji5a31l56jyldwjrkqa9v"; depends=[]; }; powRICLPM = derive2 { name="powRICLPM"; version="0.1.1"; sha256="01mccy1s0sl3haz4q26vv1dfrgzdrkds8b1c38iv6zy5am68s9iy"; depends=[dplyr furrr future ggplot2 lavaan progressr purrr rlang]; }; powdR = derive2 { name="powdR"; version="1.3.0"; sha256="1bkx43xd46gzgiphknqyz2nyvviia0xkn4h8z4k2dwcfq92iwsbw"; depends=[baseline DT factoextra FactoMineR ggplot2 ggpubr nnls plotly plyr reshape rxylib shiny shinyWidgets tidyr]; }; @@ -15215,17 +15446,15 @@ in with self; { powerjoin = derive2 { name="powerjoin"; version="0.1.0"; sha256="19b7y7aqf5159x2fi5nrx179nc673qqzkv9c8kgw85hmmjzjgnb3"; depends=[cli dplyr glue purrr rlang tibble tidyr tidyselect vctrs]; }; powerly = derive2 { name="powerly"; version="1.8.6"; sha256="0vc2wpx2b4i9vx9jvvlywq5w4dx22bn4r9fcwz123h1m09252ng8"; depends=[bootnet ggplot2 mvtnorm osqp patchwork progress qgraph quadprog R6 rlang splines2]; }; powerpkg = derive2 { name="powerpkg"; version="1.6"; sha256="18cq3zsdvzmqjp0niq0libjk4riarmiar3h6lifq54spqgrvvxh2"; depends=[]; }; - powerplus = derive2 { name="powerplus"; version="3.1"; sha256="0ayp6x34hkzgris4j3zbbs0r23n81bhww3wgfyy630ri4sk6brrn"; depends=[complexplus expm MASS Matrix phonTools]; }; ppRep = derive2 { name="ppRep"; version="0.42.3"; sha256="1s4izrqw2rmipdr385nivg8av711q3q1ri59qnqw774iwwni8cwb"; depends=[hypergeo]; }; ppcSpatial = derive2 { name="ppcSpatial"; version="0.3.0"; sha256="0dxl5vv41462vhhdvbjczcghp0rv2f2101qygn4cldfihja397y9"; depends=[dplyr ggplot2 htmltools htmlwidgets leaflet magrittr PakPC2017 scales shiny tidyr tmap]; }; ppcc = derive2 { name="ppcc"; version="1.2"; sha256="17kf97rh0b1zxh7r12rxc2qd1zlrcvlljk69k8w2jchdxiw398sb"; depends=[]; }; - ppclust = derive2 { name="ppclust"; version="1.1.0"; sha256="0vmgjjy7gin88qailzfcwapndl5s8fm6i8kw9gv6aykg9mr75xlv"; depends=[inaparc MASS]; }; - ppcong = derive2 { name="ppcong"; version="0.0.2"; sha256="0k34ibzyxak2a8xhsf4jdp50w8k8dsd1nn3gcdcakx8s2rgymq7v"; depends=[curl jsonlite tfse tibble]; }; + ppclust = derive2 { name="ppclust"; version="1.1.0.1"; sha256="1lrha08i5cp8f6670d6207jp6ad4vnmwq0lxfrlr9vhaxbs5akgi"; depends=[inaparc MASS]; }; ppcor = derive2 { name="ppcor"; version="1.1"; sha256="1x9b2kb8s0bp92b17gby0jwzzr3i4cf3ap9c4nq7m8fav72g0y3a"; depends=[MASS]; }; ppdiag = derive2 { name="ppdiag"; version="0.1.1"; sha256="1p2nbkv2jsqdwwipyp3mz9cpy9lkia2cmigbcpjsa2d2i655hvs5"; depends=[]; }; ppendemic = derive2 { name="ppendemic"; version="0.1.7"; sha256="0f9gqhkgg1vd3di1xfx0ix4is30v3abcyldpkbnj81kv60zmzcfr"; depends=[]; }; ppgam = derive2 { name="ppgam"; version="1.0.1"; sha256="0w2jci5k0y8m7rapj8w6xq849y59m7y4fp9n3f5l6q954mbc6bv0"; depends=[evgam MASS mgcv]; }; - ppgmmga = derive2 { name="ppgmmga"; version="1.2"; sha256="1dq0p3xna5r1kiyhiziz3wc78dfqh362qhna5hmkjzhljawr9jg0"; depends=[cli crayon GA ggplot2 ggthemes mclust Rcpp RcppArmadillo]; }; + ppgmmga = derive2 { name="ppgmmga"; version="1.3"; sha256="0ms6pqhdvws6dp27mgvwdm039h6z3psgbdmy2k6wq1wqr5jbsiz1"; depends=[cli crayon GA ggplot2 mclust Rcpp RcppArmadillo]; }; ppitables = derive2 { name="ppitables"; version="0.5.4"; sha256="0hssk8yf8f15x7m03x71v9yrshrzgkww8xfacbbsw5mpqcghc9zl"; depends=[tibble tidyr]; }; ppmHR = derive2 { name="ppmHR"; version="1.0"; sha256="1fc9rrk3ir3dq5d518ih67dvknhz1ln6668wy2mzsdndaysgm12g"; depends=[nleqslv]; }; ppmSuite = derive2 { name="ppmSuite"; version="0.3.4"; sha256="1n83v59v5b68d0xw3yh6xrpy480857rkkwfxclbnwnh7cj14cybm"; depends=[Matrix]; }; @@ -15239,10 +15468,10 @@ in with self; { pqrBayes = derive2 { name="pqrBayes"; version="1.0.2"; sha256="0mbhkha99qyk5hkpk13ysb0686lcn6q9vq34838fz1l7xy47mzw3"; depends=[glmnet Rcpp RcppArmadillo]; }; pqrfe = derive2 { name="pqrfe"; version="1.1"; sha256="0apsrlgricjmv202yg1h3iz2715nmf05wcvyznnha0nil7cqg0qi"; depends=[MASS Rcpp RcppArmadillo]; }; prWarp = derive2 { name="prWarp"; version="1.0.0"; sha256="1rx9yby7xwa2bgqa6a1zllan6qfchgfrg2waadmwfmjhcp8qb1mj"; depends=[Morpho]; }; - prabclus = derive2 { name="prabclus"; version="2.3-2"; sha256="0hg4d7y1w18jpgvw10z8833bbbcnlkwiasx0wh6iwa2pnnybq8gl"; depends=[MASS mclust]; }; - pracma = derive2 { name="pracma"; version="2.4.2"; sha256="05lwx2yx7f45cr5amzbjv3b2p6ibspjxl0aglq2dga6rvxzk6l0x"; depends=[]; }; + prabclus = derive2 { name="prabclus"; version="2.3-3"; sha256="1haq8dvvi21fdnzl7ykm28sif5nv9pybir96vrqfcmy3k8500p80"; depends=[MASS mclust]; }; + pracma = derive2 { name="pracma"; version="2.4.4"; sha256="0zxsqr7f4pcr1nmbbzliihyldv091ykzajv1mbdrkycp46pz6khs"; depends=[]; }; pracpac = derive2 { name="pracpac"; version="0.2.0"; sha256="0c9vr6lxw6yslfv8vap78mxdf10jz8rswas50ld0dnx1qrfpgliy"; depends=[fs glue magrittr pkgbuild renv rprojroot]; }; - practicalSigni = derive2 { name="practicalSigni"; version="0.1.1"; sha256="0hqr0b7yn7l0isr7nmx65fq46pzzix0zfwcap9w4bar9984k7f4b"; depends=[generalCorr NNS np randomForest xtable]; }; + practicalSigni = derive2 { name="practicalSigni"; version="0.1.2"; sha256="1ymq5mkp0y0zjgjvfdq3wx5qig9fiibnff4irgwkrckvp58xc9fn"; depends=[generalCorr hypergeo NNS np randomForest ShapleyValue xtable]; }; prais = derive2 { name="prais"; version="1.1.2"; sha256="16h3771lr6vn0g92bfpdq7r3wpdkspbhmrl5948p4isc5qxy2cgx"; depends=[lmtest pcse sandwich]; }; praise = derive2 { name="praise"; version="1.0.0"; sha256="1gfyypnvmih97p2r0php9qa39grzqpsdbq5g0fdsbpq5zms5w0sw"; depends=[]; }; praznik = derive2 { name="praznik"; version="11.0.0"; sha256="18b5n5s5kra6fcgafxji8kznpp8gvlslrkrdshjvqzf3s25gzmn6"; depends=[]; }; @@ -15258,7 +15487,7 @@ in with self; { precondition = derive2 { name="precondition"; version="0.1.0"; sha256="0srmr33q56dimkn0m7aad19ddrp28a0dzrpnyh4hglwy9zxfqz9j"; depends=[rlang]; }; precrec = derive2 { name="precrec"; version="0.14.4"; sha256="03hvp5h7fz4v2aswxim0mqgj9rdrhnk5xqz212161kpcrw6m67z8"; depends=[assertthat data_table ggplot2 gridExtra Rcpp rlang withr]; }; predReliability = derive2 { name="predReliability"; version="0.1.0"; sha256="18s9ijg3fcg6qb0y6pnwngmv69ajm93z0xjdzkq3fp5bxk1qylyb"; depends=[cluster rpart]; }; - predRupdate = derive2 { name="predRupdate"; version="0.1.0"; sha256="0166q1lriqnl74xmawxf4fpl826dc2j8l72k6rrakwjfbdznhgjy"; depends=[ggExtra ggplot2 pROC rlang survival]; }; + predRupdate = derive2 { name="predRupdate"; version="0.1.1"; sha256="087jkaw27lssh7400gjbjd9d583aiz7fm6a70cjhxwf5f8s8qpp8"; depends=[ggplot2 ggpubr pROC rlang survival]; }; predfairness = derive2 { name="predfairness"; version="0.1.0"; sha256="0b9d6a2rk6vw4y5hnh721gmirnm419yynbfg7arjb96558l282kd"; depends=[]; }; predhy = derive2 { name="predhy"; version="1.2.1"; sha256="1m0c35r3h63vdimixskqviyqfblj8cxaf5b1085wb72fasanak5n"; depends=[BGLR doParallel foreach glmnet pls randomForest xgboost]; }; predhy_GUI = derive2 { name="predhy.GUI"; version="1.0"; sha256="0jxx6mqw0rll4idn92hgwqpj48kd155xl49iw3xwy33gqabg9gn7"; depends=[BGLR data_table doParallel DT foreach glmnet htmltools pls predhy randomForest shiny xgboost]; }; @@ -15317,7 +15546,7 @@ in with self; { primefactr = derive2 { name="primefactr"; version="0.1.1"; sha256="11hi75jwjxrl9p5m8yjwjb20pc9y9vkhi8sjrnisdq2hm53m483w"; depends=[]; }; primer = derive2 { name="primer"; version="1.2.0"; sha256="0qs4bzh80a6058v3s25z0w64wqpscgcciqbyqdifixl51z2qadf4"; depends=[deSolve ggplot2 tidyr]; }; primerTree = derive2 { name="primerTree"; version="1.0.6"; sha256="1w2xmmpqsp8plwsacfknkjkgs4x1fksrks614jwlg6fll4zxh42n"; depends=[ape directlabels foreach ggplot2 gridExtra httr lubridate plyr reshape2 scales stringr XML]; }; - primes = derive2 { name="primes"; version="1.5.0"; sha256="0wgisbialsv24gchwzm1nx1r1186lb36v80qk9gac3xmq45z6vdv"; depends=[Rcpp]; }; + primes = derive2 { name="primes"; version="1.6.0"; sha256="1jpj7hq2hsv6x3qp409whim7480hswvmhd327b2yml8f734nv45d"; depends=[Rcpp]; }; princurve = derive2 { name="princurve"; version="2.1.6"; sha256="0wzk329bxljkzz57y220lsfckpsn45w348m6dcxh29zbj0ik65h2"; depends=[Rcpp]; }; printr = derive2 { name="printr"; version="0.3"; sha256="1xqykwfpv78pg630vw4s8idbayrl52pfp9j4ddhwr33nmvxnkiix"; depends=[knitr]; }; prinvars = derive2 { name="prinvars"; version="1.0.0"; sha256="10cxp5dqjmi0kbx8g2qvpvwv2lcdg4sd2njg81l9g8dphx0c662f"; depends=[elasticnet PMA Rdpack]; }; @@ -15336,6 +15565,7 @@ in with self; { pro = derive2 { name="pro"; version="0.1.1"; sha256="0f0iliq7bhf313hi0jbwavljic4laxfc0n3gac5y6hzm39gvvgag"; depends=[]; }; proPubBills = derive2 { name="proPubBills"; version="0.1"; sha256="1fpn9x31jjahdyk0f30mbb3ijj4dsghrq9q94r04pjsgr2jw23zx"; depends=[dplyr httr stringr]; }; probably = derive2 { name="probably"; version="1.0.2"; sha256="0bckm3gbavy6wq7f2m4cp34dkdpd3mfcikglrdci9dpmk8fx0s5p"; depends=[butcher cli dplyr furrr generics ggplot2 hardhat pillar purrr rlang tidyr tidyselect tune vctrs withr workflows yardstick]; }; + probe = derive2 { name="probe"; version="1.1"; sha256="1bgkbsx8aa0r5dpnr1nv2q9p6af40dfzl3g333wmdg1dd6d2zp4n"; depends=[glmnet Rcpp RcppArmadillo]; }; probout = derive2 { name="probout"; version="1.1.2"; sha256="1x7q878xzw1b1c6jfx856akxzcxrwanv67jji2ifkcdx2hgmgvpx"; depends=[FNN MASS mclust]; }; proccalibrad = derive2 { name="proccalibrad"; version="0.14"; sha256="0vr55rpcqh9wvy3bklssrimp42x85w3sanjgshfij657v68vmx46"; depends=[]; }; proceduralnames = derive2 { name="proceduralnames"; version="0.2.2"; sha256="1jdaizvsmw1ipbjm2qbgfvnkaz68zga7i8lp7yjf5rfzjvfi1hwq"; depends=[]; }; @@ -15344,9 +15574,9 @@ in with self; { processmapR = derive2 { name="processmapR"; version="0.5.3"; sha256="1q3zppi2hmvqaydwyjyann1zajvk19rww0mj4ra7kj20icg8520h"; depends=[BH bupaR cli data_table DiagrammeR dplyr edeaR forcats ggplot2 glue hms htmltools lifecycle miniUI plotly purrr Rcpp rlang scales shiny stringr tidyr]; }; processmonitR = derive2 { name="processmonitR"; version="0.1.0"; sha256="1ckr438yifpsh095j6bb65dq3rdm7cfm8k7qsjmcqwjkww4j74z8"; depends=[bupaR dplyr edeaR ggplot2 magrittr miniUI shiny]; }; processpredictR = derive2 { name="processpredictR"; version="0.1.0"; sha256="161gbyq21j5yip5p8p235mvcffchm7c8ksks1z7q5cwbrilcx380"; depends=[bupaR cli data_table dplyr edeaR forcats ggplot2 glue keras magrittr mltools plotly progress purrr reticulate rlang stringr tensorflow tidyr tidyselect]; }; - processx = derive2 { name="processx"; version="3.8.2"; sha256="1kbyhpzcfiqqx9csn0869zbiza6w97vq1j1y01qlph93bfpqf6z9"; depends=[ps R6]; }; + processx = derive2 { name="processx"; version="3.8.3"; sha256="0cfq6pq8rg0vhjfgvf48hfvngbn1g6hv28b6pgxh55xqh8acbn0s"; depends=[ps R6]; }; procmaps = derive2 { name="procmaps"; version="0.0.5"; sha256="0c5cby1942s9vdl0a6nyiih6x7kxii02w2l4fp8n9z07h7j5jb69"; depends=[]; }; - procs = derive2 { name="procs"; version="1.0.3"; sha256="0k2v2l843c92raa3d2gdv3ns7bxr5ja48vf7lzqkig5qdixxfafc"; depends=[common fmtr reporter tibble]; }; + procs = derive2 { name="procs"; version="1.0.4"; sha256="0pzp6mnh0b8h9n3mfqn5a9dqylfdxx0r5cxkrvmkw7f6iy92w4d2"; depends=[common fmtr reporter sasLM tibble]; }; prodest = derive2 { name="prodest"; version="1.0.1"; sha256="16nqgd9wrjfxymwbxrnlak54cagbv3fxgbql0w5bxnmyrbbqy509"; depends=[AER DEoptim dplyr Matrix Rsolnp]; }; prodigenr = derive2 { name="prodigenr"; version="0.6.2"; sha256="07r6xiqany2qzarfqphs90pcwx7zbki0z7mp329l7szfz01wxiqr"; depends=[cli fs rlang rmarkdown rprojroot whisker withr]; }; prodlim = derive2 { name="prodlim"; version="2023.08.28"; sha256="1s2xalxfq2q6a9ssz01vzpldpa98q3cl5icap0k2xr5v72gj40l0"; depends=[data_table diagram KernSmooth lava Rcpp survival]; }; @@ -15357,19 +15587,21 @@ in with self; { profile = derive2 { name="profile"; version="1.0.3"; sha256="1pzgmsn961aq6nxyi7f884hazxvf0d9szqiyv7945ap7kc9knyqd"; depends=[rlang tibble vctrs withr]; }; profileModel = derive2 { name="profileModel"; version="0.6.1"; sha256="01m5nb8cmq0aq555pxk2a99182si65hhmn68yn9nal2j3zl2bp4i"; depends=[]; }; profileR = derive2 { name="profileR"; version="0.3-5"; sha256="0fgc7585a7194c67irafjnx8g2j6mn3qhcfn76c6dh28clp20qp9"; depends=[ggplot2 lavaan RColorBrewer reshape]; }; + profiplots = derive2 { name="profiplots"; version="0.2.3"; sha256="0b2i1m9x7aqhlizv059q1gv8m15myim4q0s81gaskqf9rid83apz"; depends=[ggplot2]; }; profmem = derive2 { name="profmem"; version="0.6.0"; sha256="0gg6ja0ifwn9jj42rw1gnyil55sl9r2y5rjb6yjcvqwd5arajp3l"; depends=[]; }; profoc = derive2 { name="profoc"; version="1.2.1"; sha256="0s1fyckmfdjr5madwzrmpxkr34z940r43qny8g5aljz4qsbzlcip"; depends=[abind generics ggplot2 lifecycle Matrix Rcpp RcppArmadillo RcppProgress splines2 tibble]; }; profr = derive2 { name="profr"; version="0.3.3"; sha256="00bv1q0qn46nz4zjfs0l2yfh3hk71rajlp2rrlwg442z11k79ap9"; depends=[plyr stringr]; }; + profrep = derive2 { name="profrep"; version="1.0.0"; sha256="0p2sd95w8n4l2mxyzjxppynfdqbg6znd69360mgyci3r61za2z6z"; depends=[]; }; proftools = derive2 { name="proftools"; version="0.99-3"; sha256="095pxyyv6k818qwcjygbz1h24k0xkqi1agns8cqh2m5g64aynd70"; depends=[]; }; profvis = derive2 { name="profvis"; version="0.3.8"; sha256="1cmlcp91q8v0550iay9vsw5wllb6w2ldy6k99rb76ylhr5dwf0pc"; depends=[htmlwidgets purrr rlang stringr vctrs]; }; progenyClust = derive2 { name="progenyClust"; version="1.2"; sha256="0azp5pvk316s8xbawcqwqfd80fxb4xn8hc6aq87xwksc6fhwp94l"; depends=[Hmisc]; }; - progress = derive2 { name="progress"; version="1.2.2"; sha256="0dgzb362641aqm8xd88iqa8jmpdm43xs0aba0d5kk6fvapnxi95l"; depends=[crayon hms prettyunits R6]; }; + progress = derive2 { name="progress"; version="1.2.3"; sha256="0xljky4ad2jbbcfrcyh48li461pc5b2wk210n4x5rs2di6dhfaza"; depends=[crayon hms prettyunits R6]; }; progressr = derive2 { name="progressr"; version="0.14.0"; sha256="1bsqcarh38z86klcm5iaqmf6akgy5gaii7797c27ymx5g7w9ja4s"; depends=[digest]; }; proj4 = derive2 { name="proj4"; version="1.0-13"; sha256="1wvp17x58i614mnrjp0idzfi7s3g7pz41x8cxv05ryi9iz5l0m5c"; depends=[]; }; projections = derive2 { name="projections"; version="0.6.0"; sha256="0wpqklw5aif9vgcp6hyc7j5k8ifxwx5bhhd50llwgrh5xiy9yxyq"; depends=[ggplot2 incidence]; }; projects = derive2 { name="projects"; version="2.1.3"; sha256="0ljrhswr5sfq051x0aicl9yvwakw9d9drgrmcz9d8qhgw1if0mky"; depends=[dplyr fs lubridate magrittr purrr readr rlang rstudioapi sessioninfo stringr tibble vctrs zip]; }; projmgr = derive2 { name="projmgr"; version="0.1.0"; sha256="1iysxcl6awvp7zbm04zyq4d9659fcz3sy711jnycsxhsk8hsvmc2"; depends=[gh magrittr]; }; - projpred = derive2 { name="projpred"; version="2.7.0"; sha256="0dydkvb0znqli4lbncihk8yimsiakvdyra5cx1cakvm73mn37s5r"; depends=[abind gamm4 ggplot2 gtools lme4 loo MASS mclogit mgcv mvtnorm nnet ordinal Rcpp RcppArmadillo rstantools scales]; }; + projpred = derive2 { name="projpred"; version="2.8.0"; sha256="1xm1444qv0pkxdf2nacxnb2apx5lar1f3qz4jrxp6xd2xk2xv0xk"; depends=[abind gamm4 ggplot2 gtools lme4 loo MASS mclogit mgcv mvtnorm nnet ordinal Rcpp RcppArmadillo rstantools scales]; }; prolific_api = derive2 { name="prolific.api"; version="0.5.2"; sha256="1xg1xgkj53zls6zh5nil5njb783ymks9hgfpsxcdnvhnhgsb50k2"; depends=[data_table jsonlite]; }; prolsirm = derive2 { name="prolsirm"; version="0.1.0"; sha256="1nx4bal130r3c7hb0x5j22rh7988p62qll3rm0j8wkiqdnqkyhay"; depends=[MCMCpack]; }; prome = derive2 { name="prome"; version="1.9.1.0"; sha256="134nc90av9js4qdq7dxy7z93h621i6w1vbgly38minprfam0wwm0"; depends=[BH Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; @@ -15388,7 +15620,7 @@ in with self; { prophet = derive2 { name="prophet"; version="1.0"; sha256="06mryavky9xj54ig4scqjgpx7i56nwhs53g0zqsbs9f6qxja7gll"; depends=[BH dplyr dygraphs extraDistr ggplot2 lubridate Rcpp RcppEigen RcppParallel rlang rstan rstantools scales StanHeaders tidyr xts]; }; prospectr = derive2 { name="prospectr"; version="0.2.6"; sha256="1p53hcgcs2p09zhc2n7byjzrgvcgz6w7q00mlsn4kmnz7l4p7rrm"; depends=[foreach iterators lifecycle mathjaxr Rcpp RcppArmadillo]; }; protHMM = derive2 { name="protHMM"; version="0.1.1"; sha256="0j4n24dfvg6qqmyf5qljx34jr9p073hqflmzj57gyb8vwfzq6psr"; depends=[gtools phonTools]; }; - protViz = derive2 { name="protViz"; version="0.7.7"; sha256="18l4aw0fx47w9czw73lxh68aj4ljbfr3z39vakbbx6xp2llyw8b1"; depends=[Rcpp]; }; + protViz = derive2 { name="protViz"; version="0.7.9"; sha256="1wsjr4asjsknv8fkfv15xqnl67zfv8d2xmvw1i2l0wflxbps3af7"; depends=[Rcpp]; }; protag = derive2 { name="protag"; version="1.0.0"; sha256="1iaw2w1d7hdvlg5vplpqc49wq08dgmm0ifvp2v0ggqb8invvdnw8"; depends=[dplyr ggplot2 RColorBrewer]; }; protein8k = derive2 { name="protein8k"; version="0.0.1"; sha256="11qj4sadhcsp1kk5kjmvzj2jnd3srsm5mp0q9h9khp1ps6dk35yw"; depends=[dplyr ggplot2 gridExtra lattice magick pryr rjson rlang shiny]; }; proteus = derive2 { name="proteus"; version="1.1.4"; sha256="1i8h07k5pdsywpw5g8d06xgl5gk06g5q93jimfwkbry9ykagh1cw"; depends=[abind actuar dplyr fANCOVA furrr future ggplot2 ggthemes greybox imputeTS lubridate modeest moments narray purrr readr scales sn stringr tictoc torch VGAM]; }; @@ -15398,7 +15630,7 @@ in with self; { proton = derive2 { name="proton"; version="1.0"; sha256="1mgaw54is8l6ac1rf8s70rj7kv9xgsfdrlvjz01ggfwg7c6pyr3s"; depends=[digest]; }; protoshiny = derive2 { name="protoshiny"; version="0.1.0"; sha256="0ms8sy8p5cd8vg82m7pny6jcg5mis1l7548m2g392gjcf3hf1sf7"; depends=[DT dynamicTreeCut protoclust rare shiny shinycssloaders shinythemes]; }; prototest = derive2 { name="prototest"; version="1.2"; sha256="07g58hq2qdpczqhjsv6dq1bya9rs958r103n91icw5yc19bvyhi2"; depends=[glmnet intervals MASS Rcpp RcppArmadillo]; }; - protr = derive2 { name="protr"; version="1.6-3"; sha256="0jdx868dprp3yv66zprni6k2zj3zx7qy2qjmrbzgj1z9647x7vnk"; depends=[]; }; + protr = derive2 { name="protr"; version="1.7-0"; sha256="0hb7pixd2qa48bsv86ygdxs6v8sd0hksq99xpzr9d50nprzjmhj4"; depends=[]; }; protti = derive2 { name="protti"; version="0.6.0"; sha256="175r4ifhmh7djdr9kwyvmfaf21x89qzr758pjkcyiza42a6fvyzf"; depends=[curl data_table dplyr forcats ggplot2 ggrepel httr janitor lifecycle magrittr plotly progress purrr R_utils readr rlang stringr tibble tidyr]; }; proustr = derive2 { name="proustr"; version="0.4.0"; sha256="1qp4v4vb1qh137qn7zi1d2g999z17kq6kpyxy9355mj8c49iy8pn"; depends=[attempt rlang SnowballC stringr tidyr tokenizers]; }; provDebugR = derive2 { name="provDebugR"; version="1.0.1"; sha256="0ynz5m1gkaj1wks5l71r3iz7npf3mz0r04jsa8zwg670zsv2x7rf"; depends=[httr jsonlite provGraphR provParseR textutils]; }; @@ -15409,12 +15641,12 @@ in with self; { provTraceR = derive2 { name="provTraceR"; version="1.0"; sha256="19iillyh5zw64mmr6ik4ci1n2p651xqzxa4iq5bwa70imbzyy5ip"; depends=[provParseR]; }; provViz = derive2 { name="provViz"; version="1.0.9"; sha256="0hwd9x02xcldrmmnpknsycqlb78ngdsphs7n141rcxsv167gbmcq"; depends=[]; }; provenance = derive2 { name="provenance"; version="4.2"; sha256="1ghdvc6h25zx1hn1x2wqbc1zc1jdxv77lg0l6msymy9ap5ndcdrn"; depends=[IsoplotR MASS]; }; - proverbs = derive2 { name="proverbs"; version="0.3.0"; sha256="05pqjz83awa7l971vclg3c3f7hj3nfq0dlrzbxmr2zhysnqjnd62"; depends=[cli crayon httr lubridate magrittr purrr stringr]; }; + proverbs = derive2 { name="proverbs"; version="0.4.0"; sha256="1ilfzkpw3m8q4cr1ndygzjz363ghv0f1j5n7sw4whrzafhnlbdvg"; depends=[checkmate cli crayon glue httr2 lubridate purrr rvest stringr]; }; proxirr = derive2 { name="proxirr"; version="0.2"; sha256="0ffnzmd9zy43vzp0mc0ncjwfj5d7p2gzwk8gcwhk1f9yvgiw4wc1"; depends=[]; }; proxy = derive2 { name="proxy"; version="0.4-27"; sha256="0gsng2aggnljl4z82la9hpnd26hngzhj8fizx4wx22npqjj93694"; depends=[]; }; - proxyC = derive2 { name="proxyC"; version="0.3.3"; sha256="00p3604ny6qax5rr1865c27hfp90v2vga0xcrp3bb81xcfadl99y"; depends=[Matrix Rcpp RcppArmadillo RcppParallel]; }; + proxyC = derive2 { name="proxyC"; version="0.3.4"; sha256="1skq5cxd0kh2pccfg4h9bis4wbqb6zm04q4iwfa6dqml6hyiv7gk"; depends=[Matrix Rcpp RcppArmadillo RcppParallel]; }; prozor = derive2 { name="prozor"; version="0.3.1"; sha256="0gcjfjsvj2pjp9ih7nxvs9gfj5b94g8d3ziaz16wfbnjqm4a38lp"; depends=[AhoCorasickTrie docopt dplyr Matrix purrr readr rlang seqinr stringr]; }; - prqlr = derive2 { name="prqlr"; version="0.5.4"; sha256="123dyjq7gbwj15s47dbqcgicx9a2wrbqqzailhr3l828j5zi7679"; depends=[]; }; + prqlr = derive2 { name="prqlr"; version="0.7.0"; sha256="17z0ax3vjyghsb0byd5hjcrbcn5irnqq2q9dc6l4nnm3hpk3b2j2"; depends=[]; }; prrd = derive2 { name="prrd"; version="0.0.5"; sha256="0ig3k1l2md6hzb5asv277ylg0k9a1rkcrbs8d8h4f07pxykhmivf"; depends=[config crayon data_table DBI liteq RSQLite]; }; prt = derive2 { name="prt"; version="0.2.0"; sha256="02f75a9ici0a7fm08r0dhykf73jpixg5cm8ym2z18dhghas4zly4"; depends=[assertthat backports cli crayon data_table fst pillar rlang tibble vctrs]; }; pryr = derive2 { name="pryr"; version="0.1.6"; sha256="013p2xxd51kr9ddx051cvn45mzgj44fm47nkchdb13l0885a7hb8"; depends=[codetools lobstr Rcpp stringr]; }; @@ -15422,7 +15654,7 @@ in with self; { psData = derive2 { name="psData"; version="0.2.2"; sha256="013hb6lk9rm2w08m5jbw90ndrcd4wyy2h125jx07c9bs60wh4mp4"; depends=[countrycode DataCombine reshape2 rio xlsx]; }; psSubpathway = derive2 { name="psSubpathway"; version="0.1.2"; sha256="1vznsf2xpchzh3ybj3d2dz8611q4681540wmw11y8g4bhl1lfp0w"; depends=[GSVA igraph mpmi pheatmap]; }; psbcGroup = derive2 { name="psbcGroup"; version="1.5"; sha256="01q02lsjjj14b8si9pj12a5cvyq74lb9444vpwpxkbnsznx10bsy"; depends=[LearnBayes mvtnorm SuppDists survival]; }; - psbcSpeedUp = derive2 { name="psbcSpeedUp"; version="2.0.4"; sha256="170jgsy4wbfr98hcml4dxd4al8q2c0dk9d5k40vcfpab377pnllg"; depends=[GGally ggplot2 MASS Rcpp RcppArmadillo xml2]; }; + psbcSpeedUp = derive2 { name="psbcSpeedUp"; version="2.0.5"; sha256="090zmx0jz5npl5yw43ipz7b3yz95dz0kl5gwc505102l2gn14ibl"; depends=[GGally ggplot2 MASS Rcpp RcppArmadillo riskRegression survival xml2]; }; psborrow = derive2 { name="psborrow"; version="0.2.1"; sha256="0m2jcf5awlwkzscsps0fczpaflxzi0w6m9qxlzm7abip277lhgpd"; depends=[data_table doParallel dplyr foreach futile_logger ggplot2 MatchIt mvtnorm rjags survival]; }; pscl = derive2 { name="pscl"; version="1.5.5.1"; sha256="0nwdwyxmy4baiwjjvrypdclzhpbsipik1rkrvgag4y2csg1nf4v1"; depends=[MASS]; }; pscore = derive2 { name="pscore"; version="0.4.0"; sha256="0flzqr9x0z2mjnbm5cjm8hqndkbv2yp11agkx89mbaafsg0hmjn1"; depends=[ggplot2 JWileymisc lavaan reshape2]; }; @@ -15433,7 +15665,7 @@ in with self; { pseudorank = derive2 { name="pseudorank"; version="1.0.1"; sha256="1hjcvl38di1digkqg7nysd7bkljz1v7y54z2rz10fyk9lyp9mpmy"; depends=[doBy Rcpp]; }; pseval = derive2 { name="pseval"; version="1.3.1"; sha256="1jgnv1l9adhwrmkmp6wkzz7jf7w1hyqy47ajr29l21p4g037py45"; depends=[survival]; }; psfmi = derive2 { name="psfmi"; version="1.4.0"; sha256="1nda2vzmq7cz04g9irl186vkvi3dxpmcsm9dxhjiql3mrax82r8c"; depends=[car cvAUC dplyr ggplot2 lme4 magrittr mice mitml mitools norm pROC purrr rms rsample stringr survival tibble tidyr]; }; - psgp = derive2 { name="psgp"; version="0.3-20"; sha256="058jfjbggf9b3qbg7452zwk51k00y56k3a11zk119620jah518l5"; depends=[automap doParallel foreach gstat intamap Rcpp RcppArmadillo sp]; }; + psgp = derive2 { name="psgp"; version="0.3-21"; sha256="1pcg6q1g5ipial8kyk20n15zzls4ig0m0sxcc7d3ngryir89cyzs"; depends=[automap doParallel foreach gstat intamap Rcpp RcppArmadillo sp]; }; psica = derive2 { name="psica"; version="1.0.2"; sha256="1cnrd1p8ikv0hl97jwypw8np1ypa0d8k2mizwd1clkv7inbb264g"; depends=[BayesTree gridBase party partykit randomForest Rdpack rpart]; }; psidR = derive2 { name="psidR"; version="2.1"; sha256="06rsi6ai58yggf73hjaidjhlgc09jjk76a4drvvgfs3v0qm296mm"; depends=[data_table foreign futile_logger openxlsx RCurl SAScii]; }; psmineR = derive2 { name="psmineR"; version="0.1.0"; sha256="0fc30hsqkbfjj7wz2s7yn1w3hrr80k8bmj6ah8diswrq1ms12k3i"; depends=[bupaR cli data_table dplyr forcats ggplot2 glue rlang stringi tidyr]; }; @@ -15448,13 +15680,14 @@ in with self; { pssmooth = derive2 { name="pssmooth"; version="1.0.3"; sha256="08syh52gjaf72kq01v6b5dljmwi29nvmjmkkgmjb97zsi15z1wd3"; depends=[chngpt MASS np osDesign]; }; pstest = derive2 { name="pstest"; version="0.1.3.900"; sha256="1rhd4vgqpr9yq0pc3xql3nfgl30v20ldywapp9n967ky2dja4k0z"; depends=[glmx MASS]; }; psy = derive2 { name="psy"; version="1.2"; sha256="1cps0lc31l2zchlmrmbwhyz9zjxkl4rcjja838cnqci7plcav28l"; depends=[]; }; - psycModel = derive2 { name="psycModel"; version="0.4.1"; sha256="0b6kamy2c6a6krs4i1mzzmiacxybyqvyl9kajc9l0ykj1hilixp8"; depends=[dplyr ggplot2 glue insight lavaan lifecycle lme4 lmerTest parameters patchwork performance psych rlang stringr tibble tidyr]; }; - psych = derive2 { name="psych"; version="2.3.9"; sha256="1c8r42yv7x1vjxz8j2hvkii6jxapffiib2s5vvlsm4hp2qffihh4"; depends=[lattice mnormt nlme]; }; + psycCleaning = derive2 { name="psycCleaning"; version="0.1.1"; sha256="1xpywbf77ayx56mvcgxjch1fm6cw0al1sr7vqn3di5c56gmxn7p3"; depends=[data_table dplyr rlang tibble tidyr]; }; + psycModel = derive2 { name="psycModel"; version="0.5.0"; sha256="08n2vc5mjzv28qxayzw7b20y5ci4vgh0ppks4mpyx0a97hnnz24r"; depends=[dplyr ggplot2 glue insight lavaan lifecycle lme4 lmerTest parameters patchwork performance psych rlang stringr tibble tidyr tidyselect]; }; + psych = derive2 { name="psych"; version="2.3.12"; sha256="0q8qms180gxk7wlm8li3j5r8rwniqj01xfm00gkvkc8q9djcsm8p"; depends=[lattice mnormt nlme]; }; psychReport = derive2 { name="psychReport"; version="3.0.2"; sha256="193y07hmx630wn83ss47i2rssl1pswgc87z2ygpkaw8y8vv46wk9"; depends=[broom cli dplyr ez xtable]; }; - psychTools = derive2 { name="psychTools"; version="2.3.9"; sha256="06jw5nhb9vbdfb74y5fqnl9974p0bddymwgiyvm8mmfn2083vp1s"; depends=[foreign psych]; }; + psychTools = derive2 { name="psychTools"; version="2.3.12"; sha256="18yxmy3j2qipdynrbyc76r1q3nm9f15jvk5aakqkq79w6rflp8br"; depends=[foreign psych]; }; psychmeta = derive2 { name="psychmeta"; version="2.6.5"; sha256="0rdbi432kr433rqy5y8rjh11cq66zcc8zr4nckjqw88hsz4qhin4"; depends=[boot curl dplyr ggplot2 metafor progress purrr rlang tibble tidyr]; }; psycho = derive2 { name="psycho"; version="0.6.1"; sha256="1a3qccr9jwrbwkfbrvckkhhk9qygrc5n4mq80kpzx0zy5bylxi0a"; depends=[bayestestR dplyr effectsize ggplot2 insight parameters scales stringr]; }; - psychometric = derive2 { name="psychometric"; version="2.3"; sha256="0yn1k1z9mf3bmlgygwiwb6y04c52rpx47n2v2x8lac5zds5yb4xl"; depends=[dplyr multilevel nlme purrr]; }; + psychometric = derive2 { name="psychometric"; version="2.4"; sha256="1mlggzw80pb7kfykva1s4ic726l8dckrgik2519njh32ycvk9x1s"; depends=[dplyr multilevel nlme purrr]; }; psychomix = derive2 { name="psychomix"; version="1.1-8"; sha256="0lfhfcmrk65gkr1yp317b515vmadbcf0vjcnc76d07yp6yfkz5qw"; depends=[flexmix Formula lattice modeltools psychotools]; }; psychonetrics = derive2 { name="psychonetrics"; version="0.11.5"; sha256="0syfnjmkwlzfjpl6wpqrbrww1wmddj0l9vwjll1mg0v3as69m28b"; depends=[abind combinat corpcor dplyr GA glasso IsingSampler lavaan magrittr Matrix mgcv numDeriv optimx pbapply pbv psych qgraph Rcpp RcppArmadillo rlang roptim tidyr VCA]; }; psychotools = derive2 { name="psychotools"; version="0.7-3"; sha256="1yl5b3ws95c80gwjxdrcqj5pv7k3vf6ixb390xc758hz0b4gawqx"; depends=[]; }; @@ -15472,16 +15705,18 @@ in with self; { ptmixed = derive2 { name="ptmixed"; version="1.1.3"; sha256="1wdasnmddb2k8n7vzsjqw6kjg6hgh8bjn6m8fgrhxdrpp2pgrqx4"; depends=[GLMMadaptive lme4 matrixcalc moments mvtnorm numDeriv tweeDEseq]; }; ptools = derive2 { name="ptools"; version="2.0.0"; sha256="12k47f2nwf5r0d4r1n3qksdsd1gk3ax519hqz6803hynwlcqx2a3"; depends=[igraph partitions RANN raster sf sp spatstat_geom spatstat_utils]; }; ptspotter = derive2 { name="ptspotter"; version="1.0.2"; sha256="0mw9s2h6bhyjrcw9f0ayzcwg30inwyr7dqfk43qc24ppkclh85wh"; depends=[beepr log4r pryr stringr this_path]; }; - pttstability = derive2 { name="pttstability"; version="1.2"; sha256="12a1pj8zrf6ir6szh51mlg6mlpqkqdb8p5656wg27lxf90nwvgj7"; depends=[rEDM]; }; + pttstability = derive2 { name="pttstability"; version="1.3"; sha256="1wx8j5pap6nr4h1a3dprvl9dm81kl0k8yz1lmnb43bd6irm3m0mi"; depends=[rEDM]; }; ptvapi = derive2 { name="ptvapi"; version="2.0.3"; sha256="0qz1ras2xbmph9hkxy9hpzw1abf2lrfs38jfw2yfxhhdv0frdcga"; depends=[assertthat digest glue httr jsonlite purrr tibble]; }; ptw = derive2 { name="ptw"; version="1.9-16"; sha256="0rma3h9ksc5qigdvk5vappb4ipd4rpk64wckzcxvxspakr5w71vy"; depends=[RcppDE]; }; ptwikiwords = derive2 { name="ptwikiwords"; version="0.0.3"; sha256="129dad1vy52sf97dqrkwa49vjhv2kvs4pmd5zvq8pxd51hqm6wy9"; depends=[]; }; ptycho = derive2 { name="ptycho"; version="1.1-4"; sha256="1llk3rpk0lf80vwvs23d6dqhgyic3a6sfjc393csj69hh01nrdvc"; depends=[coda plyr reshape2]; }; - pubh = derive2 { name="pubh"; version="1.2.7"; sha256="0l87x8mnjssvbcwsm48gsn2mmidkhk7gzy5x2v6qrcxcxw32pm68"; depends=[car dplyr emmeans Epi epiR epitools ggformula ggplot2 gtsummary Hmisc huxtable lmtest magrittr moonBook sandwich sjlabelled sjmisc sjPlot survival tibble tidyselect]; }; + pubh = derive2 { name="pubh"; version="1.3.1"; sha256="0gz34r77vbvc7jvp0q6i3b0i0apz2cm1wsklcx4m9rn0rn08j51s"; depends=[car dplyr emmeans Epi epiR epitools ggformula ggplot2 gtsummary huxtable lmtest magrittr moonBook sandwich sjlabelled sjmisc survival tibble tidyselect]; }; public_ctn0094data = derive2 { name="public.ctn0094data"; version="1.0.6"; sha256="105v4if9fqbqfrgkvcc6ws2cggn67fp3nh9y41absd7jvmzsb49h"; depends=[]; }; + public_ctn0094extra = derive2 { name="public.ctn0094extra"; version="1.0.4"; sha256="0zmf0nx6skzpbdy8niqm2d7an1q4wy6y30wim53i18mzpm84wys4"; depends=[dplyr magrittr public_ctn0094data purrr tibble tidyr]; }; publipha = derive2 { name="publipha"; version="0.1.2"; sha256="03fpwxh5fyiq84wvmp5yyvsvqnznxyc4ncffn0nfhdnj5giymqvh"; depends=[BH loo Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders truncnorm]; }; pubmed_mineR = derive2 { name="pubmed.mineR"; version="1.0.19"; sha256="0yh4gjhh7nw5vh3ksay2z5pgskmasbagzbgb3bfxch9b6arv6kgc"; depends=[boot R2HTML RCurl RJSONIO XML]; }; pubmedR = derive2 { name="pubmedR"; version="0.0.3"; sha256="153br94iqayrvvgzrzx0r3ilcrmnznfdnzk8yaii01s8i1g1wxcd"; depends=[rentrez XML]; }; + pubmedtk = derive2 { name="pubmedtk"; version="1.0.2"; sha256="01jxqki4gnigcssqqprjfsxr8bsb5c1ag7ivvr07x5i169kwqgvc"; depends=[assertthat dplyr httr jsonlite magrittr rlang stringr xml2]; }; pubtatordb = derive2 { name="pubtatordb"; version="0.1.4"; sha256="0i5azbf75bwxxzpsr5fc2hh22pbwix00hz9dcdpn5jgp2957f7wx"; depends=[assertthat DBI dplyr R_utils readr RSQLite]; }; pullword = derive2 { name="pullword"; version="0.3"; sha256="125d091ba9h8h61y0m1bnflklmz898sp9w6ibca50vwz3d2qy5rz"; depends=[RCurl]; }; puls = derive2 { name="puls"; version="0.1.2"; sha256="0cdgcm4fvakk2mdjmlsnin3d0bf56wrm23p9f4bhh5j1ib68lsh5"; depends=[cluster dplyr fda fda_usc ggplot2 monoClust purrr rlang tibble tidyr]; }; @@ -15491,7 +15726,7 @@ in with self; { puniform = derive2 { name="puniform"; version="0.2.7"; sha256="15q5wlcps7387rjz7p1f5kifg1fl5yxxy7gjx6fvspvqwjkjbs4z"; depends=[ADGofTest metafor numDeriv Rcpp RcppArmadillo]; }; pureseqtmr = derive2 { name="pureseqtmr"; version="1.4"; sha256="105v0ydl458xzgkdas7m8llf0672s9klv816sjl27dy0a3k8163f"; depends=[data_table devtools dplyr ggplot2 Peptides plyr rappdirs Rcpp readr stringr tibble]; }; purge = derive2 { name="purge"; version="0.2.1"; sha256="1faf8mkaxsnj63wnig5rs50hd3j6vzaj0xkdz8kn0j7y2vvshp9p"; depends=[]; }; - purgeR = derive2 { name="purgeR"; version="1.8"; sha256="00dg6hxv5ld13daph77whzarfwm0ryrwnrs7yc0hqd77k36v336d"; depends=[doSNOW foreach progress Rcpp RcppProgress]; }; + purgeR = derive2 { name="purgeR"; version="1.8.2"; sha256="0w3mcij7q5aqbs5phiyqprgr3hvs77fnjmbayp2rwn9qm1sx160a"; depends=[doSNOW foreach progress Rcpp RcppProgress]; }; purging = derive2 { name="purging"; version="1.0.0"; sha256="1b8f87jn6wyh4fp6b1660bd484wcf7xiajdg9dz2594aj1r94qsr"; depends=[MASS]; }; purrr = derive2 { name="purrr"; version="1.0.2"; sha256="0qxvifs5gakjbivs8dgz6nrp6df2ypr3c4dlj84gyga3i2xwc6rc"; depends=[cli lifecycle magrittr rlang vctrs]; }; purrrlyr = derive2 { name="purrrlyr"; version="0.0.8"; sha256="0ql08dka07wi1cxjcn12pxj00j0cm112074l7byj9vmi3rlqynh8"; depends=[dplyr magrittr purrr Rcpp]; }; @@ -15525,13 +15760,13 @@ in with self; { pylintR = derive2 { name="pylintR"; version="0.1.0"; sha256="00k9p3igdxhyx353gq8j9mnhrs9fh0j4q2iqa2ljfjdsdw1r2asr"; depends=[fansi htmlwidgets rstudioapi]; }; pyramid = derive2 { name="pyramid"; version="1.5"; sha256="0lakn9knmhqvhrp98sc3hhwd4bilpplxbr5j9bv8w6li0qd3d04a"; depends=[]; }; pysd2r = derive2 { name="pysd2r"; version="0.1.0"; sha256="1dqvgdxj6m683wkjyjhv685xnhl9328bm921zphm1i9p70fahs0n"; depends=[knitr reticulate tibble]; }; - pysparklyr = derive2 { name="pysparklyr"; version="0.1.0"; sha256="0gs0v8a0niqvd120m31vbgp62abvygs73150pdds9lnal16wy2ip"; depends=[cli DBI dbplyr dplyr fs glue httr2 magrittr processx purrr reticulate rlang sparklyr tidyr tidyselect vctrs]; }; + pysparklyr = derive2 { name="pysparklyr"; version="0.1.2"; sha256="0bsng2m9sw2iicd35db82r8xlinr600d8s8rzkx83picmcbj02bi"; depends=[cli DBI dbplyr dplyr fs glue httr2 magrittr processx purrr reticulate rlang rstudioapi sparklyr tidyr tidyselect vctrs]; }; pzfx = derive2 { name="pzfx"; version="0.3.0"; sha256="0f8bvwnk44wq8j58rw80b9bclknrh4a3iqdl3p4y26q100cpisgr"; depends=[xml2]; }; qCBA = derive2 { name="qCBA"; version="0.5.1"; sha256="1r9khpmdxjcnlbx4ccg26vsyp3wdc06bvlx9yl9zm4kwfi68aj9y"; depends=[arc arules rJava]; }; qGaussian = derive2 { name="qGaussian"; version="0.1.8"; sha256="02xy35xg4swr1ldnsbywnz2h0ga1pbsivnj0aqmpll7kvwl9qz4c"; depends=[Rcpp robustbase zipfR]; }; qMRI = derive2 { name="qMRI"; version="1.2.7"; sha256="0jiwvnhmm4zwqydqkzsygwkm23nc0zzjz5w7yckwdfc5zafch4hk"; depends=[adimpro aws awsMethods oro_nifti stringr]; }; qPCRhelper = derive2 { name="qPCRhelper"; version="0.1.0"; sha256="0v1d4k2v2sgcy0xh2vq21yv9sw71bj44rc273g9ggg214zqdprxd"; depends=[dplyr ggplot2 ggpubr magrittr rstatix]; }; - qPCRtools = derive2 { name="qPCRtools"; version="0.2.1"; sha256="1z5yha37w4zgf0yzkrrap34s4f2ngblvh698d7m0dfdchgai63qp"; depends=[broom data_table dplyr ggplot2 ggpmisc ggthemes kableExtra magrittr multcomp readxl reshape2 rstatix sjmisc stringr tibble tidyr xlsx]; }; + qPCRtools = derive2 { name="qPCRtools"; version="1.0.1"; sha256="1m9niwqva1b7spkk8xn4n6f7xnfv9zmh1ardahaq10wr7c0x11sy"; depends=[broom dplyr ggplot2 ggpmisc ggthemes kableExtra magrittr multcomp rstatix tibble tidyr]; }; qacBase = derive2 { name="qacBase"; version="1.0.3"; sha256="0rmxmaaa162w1qrbkcm2fd2rnrp2kqjjh6mpszpv1lpfdaq7p4yq"; depends=[crayon dplyr ggcorrplot ggExtra ggplot2 haven multcompView patchwork PMCMRplus purrr rlang tidyr]; }; qad = derive2 { name="qad"; version="1.0.4"; sha256="1pvdm6h5zilvrpggvy5qq5lhxxblslkjvjjfdj1f5zaick2hmf3s"; depends=[copula cowplot data_table dplyr ggExtra ggplot2 Rcpp viridis]; }; qap = derive2 { name="qap"; version="0.1-2"; sha256="19adb1bw46pcnmmhqz2jklr0vmma3llxajqp0j9mqfksmsisv927"; depends=[]; }; @@ -15553,6 +15788,7 @@ in with self; { qdapRegex = derive2 { name="qdapRegex"; version="0.7.8"; sha256="1pf1cz03i6sn83d1aaj4cv4jfavs6k81nn5sy7b0aw4i1hpkyiwz"; depends=[stringi]; }; qdapTools = derive2 { name="qdapTools"; version="1.3.7"; sha256="1cf42lxzqha2ah0yjl144pch50imfr5rf6g0b59xr5jf9x96dsjp"; depends=[chron data_table RCurl XML]; }; qdm = derive2 { name="qdm"; version="0.1-0"; sha256="0cfxyy8s5zfb7867f9xv9scq9blq2qnw68x66m7y7nqlrrff5xdr"; depends=[]; }; + qeML = derive2 { name="qeML"; version="1.1"; sha256="1pgrzahn1wlk5c8zy1zvfg07xqmmn5ky4y1ksgj48gvilzgjqjwk"; depends=[FOCI gbm grf gtools partools regtools rmarkdown rpart rpart_plot tm toweranNA tufte]; }; qfa = derive2 { name="qfa"; version="2.1"; sha256="1cawddpspdwrnc7ysp0v109j3k1lqpl9gyhp0jg5ribfiipyszww"; depends=[colorRamps doParallel fields foreach MASS mgcv nlme quantreg RhpcBLASctl]; }; qfasar = derive2 { name="qfasar"; version="1.2.1"; sha256="14370bmq4qx5j02va13wz52m2lgl4vb992p9587z9v2sxl1v4jjg"; depends=[Rsolnp]; }; qfratio = derive2 { name="qfratio"; version="1.1.0"; sha256="1rdvdx6j1s2fq9frrghw1d2jhjr3m9nzzqhik293ix332wvwpy45"; depends=[MASS Rcpp RcppEigen]; }; @@ -15560,18 +15796,16 @@ in with self; { qgcomp = derive2 { name="qgcomp"; version="2.15.2"; sha256="0qllrh5zmmd63kwjn7j3f5z56zr27q7czf6shdzcrf6ajy99risp"; depends=[arm future future_apply generics ggplot2 gridExtra nnet pscl survival tibble]; }; qgcompint = derive2 { name="qgcompint"; version="0.7.0"; sha256="0v2b7rr6m5mx3wyclbryxlcdly1a2vj8z0ywsyq4vvj66g2aa0yk"; depends=[arm future future_apply ggplot2 gridExtra qgcomp survival]; }; qgg = derive2 { name="qgg"; version="1.1.2"; sha256="0195fzcr0xy2dns4jl5kn3nigy989l47syn8iavfdpqb76zsh0a3"; depends=[coda corpcor data_table MASS MCMCpack Rcpp RcppArmadillo statmod]; }; - qgisprocess = derive2 { name="qgisprocess"; version="0.1.0"; sha256="075fanz6s4qfinx1yc503xl9viap639ricp9mdm314hq2d94lfjr"; depends=[assertthat glue jsonlite processx rappdirs rlang stringr tibble vctrs withr]; }; - qgraph = derive2 { name="qgraph"; version="1.9.5"; sha256="1mi19bjx83zb42wmgb716a3l4gvwch3rmybdqmm8k3dl8xr2qnjc"; depends=[abind colorspace corpcor fdrtool ggplot2 glasso gtools Hmisc igraph jpeg lavaan Matrix pbapply plyr png psych Rcpp reshape2]; }; + qgisprocess = derive2 { name="qgisprocess"; version="0.2.0"; sha256="0f3aidzvib91sisv483wgxk3zxk3zhw0gdybjf5y0a76cskifd0b"; depends=[assertthat glue jsonlite processx rappdirs rlang stringr tibble vctrs withr]; }; + qgraph = derive2 { name="qgraph"; version="1.9.8"; sha256="1m019j5nxc0184p0r2zgdn457g555nxsp2s08maa053nydj1va0l"; depends=[abind colorspace corpcor fdrtool ggplot2 glasso gtools Hmisc igraph jpeg lavaan Matrix pbapply plyr png psych Rcpp reshape2]; }; qgshiny = derive2 { name="qgshiny"; version="0.1.0"; sha256="0ydhwg4abn8n9pwnjnwf1n1k854zw31z8f2splzdm5j279lsjg3r"; depends=[rmarkdown shiny]; }; qgtools = derive2 { name="qgtools"; version="2.0"; sha256="1gj7vbam53yr2rnxzfxng1p107bjcyjmyj47cxyzaiv19pznkbmw"; depends=[]; }; - qha = derive2 { name="qha"; version="0.0.8"; sha256="0sdf6g6884wn73i237xkwszg2mq8xddhvyy225qzpplh5za4pnhl"; depends=[ade4 FactoClass FactoMineR]; }; qicharts = derive2 { name="qicharts"; version="0.5.8"; sha256="1n8jvb9dfb2k60zi9z99sncpwqbbj0h8zngmqq2k795zpa79gf1d"; depends=[ggplot2 lattice latticeExtra scales]; }; qicharts2 = derive2 { name="qicharts2"; version="0.7.4"; sha256="147wzp1n55nrmrjzkzflrz1g2r4iif5nyncjlmcp9zk22qx1kl05"; depends=[ggplot2 scales]; }; qif = derive2 { name="qif"; version="1.5"; sha256="12azs7c0anpd71d5663y1jrhirry6cr78wislp4fk64hmsbx7sx4"; depends=[MASS]; }; qiitr = derive2 { name="qiitr"; version="0.1.1"; sha256="0qbqx7g4np2ygyxiqmq5cww1az6ijjx6na6b1mp4ywmyxkjg3k29"; depends=[httr jsonlite purrr rstudioapi]; }; qkerntool = derive2 { name="qkerntool"; version="1.19"; sha256="14inry2hqvkmy0y2y3cl75ri4vri0hirv98gw2rymny69lia5x0s"; depends=[class]; }; - qlcMatrix = derive2 { name="qlcMatrix"; version="0.9.7"; sha256="0iqkcvvy8rxlk0s83sjq57dd6fadb18p5z31lzy0gnzv1hsy1x8y"; depends=[docopt Matrix slam sparsesvd]; }; - qlcal = derive2 { name="qlcal"; version="0.0.8"; sha256="04bs9kgcdm5s6i62gadb70mrw5x96yq31i6004fxspp41p7flb07"; depends=[BH Rcpp]; }; + qlcal = derive2 { name="qlcal"; version="0.0.9"; sha256="1pl7bs0v9qh89j0r9nqygfr2g3hq9c285nbvfsmxncxqwvpgcxv3"; depends=[BH Rcpp]; }; qlifetable = derive2 { name="qlifetable"; version="0.0.1-15"; sha256="0mqwlvkrd3sfnjx3vwc1pr6wzjwk7gz6mgmakxhh6gbh0v3swf0d"; depends=[]; }; qmap = derive2 { name="qmap"; version="1.0-4"; sha256="02xvq1mw83gln7phacbi3vhkvb100crggbldv13mhwq3wjnmg5k2"; depends=[fitdistrplus]; }; qmd = derive2 { name="qmd"; version="1.1.2"; sha256="15y1bivli3jy09l4j37zp327x1nchkg6qm8hs46srcxznh9zb99d"; depends=[cowplot dplyr ggplot2 qad Rcpp]; }; @@ -15594,18 +15828,18 @@ in with self; { qra = derive2 { name="qra"; version="0.2.7"; sha256="0wx0lz8a7qc1fdpvgyfhpbryy7wk7yi90ii2yirh57dvpyfq54m0"; depends=[ggplot2 knitr lattice latticeExtra lme4 rmarkdown]; }; qrcm = derive2 { name="qrcm"; version="3.0"; sha256="0y1na936vk5qsir5plzjrbv39jpnq01qplza32z31x6y28is2fz9"; depends=[pch survival]; }; qrcmNP = derive2 { name="qrcmNP"; version="0.2.0"; sha256="0hxg9w4k4k14fan6hb476wnnnpf4y6xywc2vbjka7cmpl1ydw1p4"; depends=[qrcm survival]; }; - qrcode = derive2 { name="qrcode"; version="0.2.1"; sha256="1sxaqyp35k8cj5ilrrkifnf4icsm306arsfk2xq2vbx4qzxv96hq"; depends=[assertthat]; }; + qrcode = derive2 { name="qrcode"; version="0.2.2"; sha256="07dkvga60532ngqg77icdfzv1wmx1qdn02js7pwyjf55xgim3fvn"; depends=[assertthat]; }; qrencoder = derive2 { name="qrencoder"; version="0.1.0"; sha256="1lg60lg2fiqdw0m228i8pln2p0kqp9f21qmrx6r6rwxifvwlfhv8"; depends=[base64enc png raster Rcpp]; }; qreport = derive2 { name="qreport"; version="1.0-0"; sha256="06ycxcs9kkx3m9f74bjvlj84jjp60wd0hjd40mgpir2559hqmqnb"; depends=[data_table Formula ggplot2 Hmisc htmltools knitr rms viridis]; }; qris = derive2 { name="qris"; version="1.0.0"; sha256="0rdfpxip37wxim9ini4vgjjpk5b9jqdlaygqkbid2jgjzzya98h0"; depends=[ggplot2 nleqslv quantreg Rcpp RcppArmadillo stringr survival]; }; qrjoint = derive2 { name="qrjoint"; version="2.0-9"; sha256="0dvz5adawy143r0ddgrblzac76igwmngnblr6vq57sxlvj1nsm7h"; depends=[coda kernlab Matrix quantreg]; }; - qrlabelr = derive2 { name="qrlabelr"; version="0.1.0"; sha256="128h5jg9hizagh9qa33nb4hjl0ypxpli65p3hwbs9qgxxgwymj17"; depends=[argonDash argonR assertthat bslib desplot dplyr ggplot2 purrr qrencoder raster reactable readxl shiny shinyBS shinycssloaders shinyjs shinyWidgets uuid]; }; + qrlabelr = derive2 { name="qrlabelr"; version="0.2.0"; sha256="1bv76d3fkficcaqg4kzkkxjq1p24c6hxd25jyfia96nkmxyds44m"; depends=[argonDash argonR assertthat bslib desplot dplyr ggplot2 purrr QBMS qrencoder raster reactable readxl shiny shinyBS shinycssloaders shinyjs shinyWidgets uuid]; }; qrmdata = derive2 { name="qrmdata"; version="2022-05-31-1"; sha256="1wp92qjmhy12l4l80kbq7rxc8vnwinfi5qbp74a5zkpwrbdrhi2h"; depends=[xts]; }; qrmix = derive2 { name="qrmix"; version="0.9.0"; sha256="1r695d9bmmngvblh9jj0rnjymdaln9w0jywz51wla0bdssssf845"; depends=[MASS quantreg]; }; qrmtools = derive2 { name="qrmtools"; version="0.0-16"; sha256="14396xnh4m1kkrhngpai3s4a94csqqbpi1nlqalq0l53iyvj8bcz"; depends=[ADGofTest lattice Quandl quantmod rugarch xts zoo]; }; qrng = derive2 { name="qrng"; version="0.0-9"; sha256="1qkfaqj0bmfvray5cdv83ic967wf2lsvnr37z008vi7kwm2glpig"; depends=[]; }; qrnn = derive2 { name="qrnn"; version="2.1"; sha256="19lavs7r7xhwxgbaw6i6makfrbym7aiz8ar3vcb8ff1p2jdpqnag"; depends=[]; }; - qs = derive2 { name="qs"; version="0.25.5"; sha256="0k0688fz95xwb4s9fjgnnif3kzbisxgfgbfad07gpzd0123ki1rz"; depends=[RApiSerialize Rcpp stringfish]; }; + qs = derive2 { name="qs"; version="0.25.7"; sha256="0a0jay9p2k0ahf08s94dr1w66qhbgzs87vkaanwkd4j6lvijncz7"; depends=[RApiSerialize Rcpp stringfish]; }; qsimulatR = derive2 { name="qsimulatR"; version="1.1.1"; sha256="00022yyfwpv7f28isbnqy8001nm6xvxnfb2sbjckl8vbv0sjvs9n"; depends=[]; }; qsort = derive2 { name="qsort"; version="0.2.3"; sha256="1xvp29dijfa2207wyw3z09rmffn61fngfy0f00qjk284n1jnnvrg"; depends=[cowplot ggplot2 gridExtra purrr]; }; qsplines = derive2 { name="qsplines"; version="1.0.1"; sha256="0zln3w2qx8ck9631hkq8ig5bc2l55wg5mdp3i0fm9amg8mhzq37i"; depends=[BH onion Rcpp shiny]; }; @@ -15613,8 +15847,8 @@ in with self; { qst = derive2 { name="qst"; version="0.1.2"; sha256="0f5c4088y9c5fxyy2dyfkp049lnzvys3zyizazxsa82xwkwsbc8a"; depends=[DBI dbplyr dplyr magrittr RSQLite tibble]; }; qsub = derive2 { name="qsub"; version="1.1.3"; sha256="0ygys183pj420jr9bz13x009qis3qr1aqxgw3l2d4xx3xv90iy3g"; depends=[dplyr glue pbapply processx purrr random readr ssh stringr tidyr]; }; qte = derive2 { name="qte"; version="1.3.1"; sha256="1hz3rwsi3w2b1xjigf5s3866djcxdkjz7jwcz0rin22v5h6sql80"; depends=[BMisc data_table formula_tools ggplot2 Hmisc pbapply quantreg texreg]; }; - qtl = derive2 { name="qtl"; version="1.60"; sha256="1bfqb5rz1qxrq8876d13m8zfsn88xn9xsymjkzvd8xka5kz5v7lf"; depends=[]; }; - qtl2 = derive2 { name="qtl2"; version="0.32"; sha256="1sbkflnb6s8k8fwkhs7pg1s9jw13jd3y5a15xrqmy391bm5s26rn"; depends=[data_table jsonlite Rcpp RcppEigen RSQLite yaml]; }; + qtl = derive2 { name="qtl"; version="1.66"; sha256="10fnc3ms97rdqsqxz5jpvg2cmrwmz69wjxxs3h65r1yhy94pssnl"; depends=[]; }; + qtl2 = derive2 { name="qtl2"; version="0.34"; sha256="1h3wim850b2xk09z9vgnyfp20k7vg94zf7szcrlw5nf1w9gn4wzy"; depends=[data_table jsonlite Rcpp RcppEigen RSQLite yaml]; }; qtl2convert = derive2 { name="qtl2convert"; version="0.28"; sha256="06703m9mkpc77agkmikr9bhr4ag1z161k8pq8l1i562mkd0qlgs8"; depends=[qtl qtl2 Rcpp]; }; qtl2fst = derive2 { name="qtl2fst"; version="0.26"; sha256="0wpqpmj752pwjgghv7b30r69nc950h5fnsszsj142p7vws7ss8j9"; depends=[fst qtl2]; }; qtl2ggplot = derive2 { name="qtl2ggplot"; version="1.2.2"; sha256="0w3xlyxcg0v111fp7z998m5qk0rfyk4k1dl7bpbww9v2ppizzr36"; depends=[assertthat dplyr ggplot2 ggrepel purrr qtl2 RColorBrewer Rcpp rlang stringr tidyr]; }; @@ -15635,11 +15869,11 @@ in with self; { quadprog = derive2 { name="quadprog"; version="1.5-8"; sha256="1ka9g8zak8sg4y2xbz93dfrldznlk9qpd4pq9z21cdcdn3b8s4i2"; depends=[]; }; quadprogXT = derive2 { name="quadprogXT"; version="0.0.5"; sha256="1yna2kx9pr58vyy6f4mwx4a6avjz84wwhcary88v1k0ihhv9swcz"; depends=[quadprog]; }; quadraticSD = derive2 { name="quadraticSD"; version="0.1.0"; sha256="07v71anh0kz898x6j677bxx5lyarc4r0z1j0vx501ffi38icc1f0"; depends=[ggplot2 shiny]; }; - quadrupen = derive2 { name="quadrupen"; version="0.2-10"; sha256="1vlpx0yf7b4vka4lrdqsfyjnajbcv25kdp8y27di3ww6h0759h9l"; depends=[ggplot2 Matrix Rcpp RcppArmadillo reshape2 scales]; }; + quadrupen = derive2 { name="quadrupen"; version="0.2-11"; sha256="1gmq6wqf4qaamz33qk1y7003lbbfg34rcr48a3jp7fd3aww0yp9c"; depends=[ggplot2 Matrix Rcpp RcppArmadillo reshape2 scales]; }; quadtree = derive2 { name="quadtree"; version="0.1.14"; sha256="15i68ykbr0ld8cfcha1ywf4lmsf7zpgi7qsn2rpf44k92fp6hzc7"; depends=[Rcpp terra]; }; qualV = derive2 { name="qualV"; version="0.3-5"; sha256="09qqfx94f46x585iipr9wii8ji6ih31xymbw4p5v3qixmfpja276"; depends=[KernSmooth]; }; qualitycontrol = derive2 { name="qualitycontrol"; version="0.1.0"; sha256="134dksflv43bixqa5lhcjgwqnahzpb2fnzl4dhc81wdb9pcqsg7v"; depends=[dplyr janitor openxlsx readxl stringr]; }; - qualmap = derive2 { name="qualmap"; version="0.2.1"; sha256="0r8v7r2mh1dsvr9lvdcmddp5agbx5djg7850zf6ixlv8zak6cxz5"; depends=[dplyr glue leaflet purrr rlang sf]; }; + qualmap = derive2 { name="qualmap"; version="0.2.2"; sha256="1ych61nb3jxvd23d13dlw5y47n94gs0k6ncq7i4rbk01594bk5al"; depends=[dplyr glue leaflet purrr rlang sf]; }; qualpalr = derive2 { name="qualpalr"; version="0.4.4"; sha256="13mahl7v1sldy35ssmr9k0anhx569g1rv44kgvdw5w5s8dm28512"; depends=[assertthat randtoolbox Rcpp RcppArmadillo]; }; qualtRics = derive2 { name="qualtRics"; version="3.1.7"; sha256="0jfzghqj8qz5wz13j4v0h58l7mflmz7jm324j2agr109q2kl2vma"; depends=[cli dplyr glue httr jsonlite lifecycle lubridate purrr readr rlang sjlabelled stringr tibble tidyr]; }; qualvar = derive2 { name="qualvar"; version="0.2.0"; sha256="1c7b7lcyq2l46sslk185r6xfh5fb35z9qihrhnh294sw1k52bffa"; depends=[]; }; @@ -15649,7 +15883,7 @@ in with self; { quanteda = derive2 { name="quanteda"; version="3.3.1"; sha256="0rj13m0fmk0h9akmqwwp7nkwrvym7sj97jgvjr4mvi3sglq451b2"; depends=[fastmatch jsonlite magrittr Matrix Rcpp RcppArmadillo RcppParallel SnowballC stopwords stringi xml2 yaml]; }; quanteda_textmodels = derive2 { name="quanteda.textmodels"; version="0.9.6"; sha256="1shsyz8nz8cabmsgrimxym4b0fd3zbjp3vx5si41rp9gr9c94sx1"; depends=[glmnet LiblineaR Matrix quanteda Rcpp RcppArmadillo RcppParallel RSpectra SparseM stringi]; }; quanteda_textplots = derive2 { name="quanteda.textplots"; version="0.94.3"; sha256="05dz3llp79i1giz0b7lm6kb14qf2rp26xz33skb71iiks290zp19"; depends=[extrafont ggplot2 ggrepel igraph Matrix network quanteda RColorBrewer Rcpp sna stringi]; }; - quanteda_textstats = derive2 { name="quanteda.textstats"; version="0.96.3"; sha256="1nx716fvdpwac67m8ld0nhqvv34a2hfk2c7kf1b2l1n60x285cr2"; depends=[Matrix nsyllable proxyC quanteda Rcpp RcppArmadillo RcppParallel stringi]; }; + quanteda_textstats = derive2 { name="quanteda.textstats"; version="0.96.4"; sha256="0x0b3zk1lmy0mxjpfnw7nshc9vp1i45gkd53g838ks207sdr8q4l"; depends=[Matrix nsyllable proxyC quanteda Rcpp RcppArmadillo RcppParallel stringi]; }; quantification = derive2 { name="quantification"; version="0.2.0"; sha256="116cp88q9cmizxc2a8lsysa1vwyp1y86457fx5qkq5dcm4g721g8"; depends=[car]; }; quantileDA = derive2 { name="quantileDA"; version="1.1"; sha256="0jbklxsy33j7clcw97qq4ijwkrb94v2m11gjcfa38vplfxm9913q"; depends=[]; }; quantilogram = derive2 { name="quantilogram"; version="2.2.1"; sha256="0gvr93d6jjixcrislym0mna2l3plqhl8adaqiagdvxg4y0adfmf0"; depends=[np quantreg SparseM]; }; @@ -15669,7 +15903,7 @@ in with self; { quarto = derive2 { name="quarto"; version="1.3"; sha256="1hbj762hgjk7047nycj7rrngsf8f6g2s06r7jjg78ilrjb429c1w"; depends=[jsonlite later processx rmarkdown rsconnect rstudioapi yaml]; }; queryparser = derive2 { name="queryparser"; version="0.3.2"; sha256="0va2h1midvf8adymqwg79flpqq7ciznk285kmyqdskkn87argjd2"; depends=[]; }; queryup = derive2 { name="queryup"; version="1.0.5"; sha256="0rl31vs1m7qjbix1qgmvnxrvjf2k2ikd8p9frz1yia7xxaq1m286"; depends=[httr jsonlite]; }; - quest = derive2 { name="quest"; version="0.1.0"; sha256="15al3j850v7i59zr9yybxjrb3lnpd14369rp5vnpzwxy80jpy7d9"; depends=[car plyr psych psychTools str2str]; }; + quest = derive2 { name="quest"; version="0.2.0"; sha256="0a3slzskacp0pj0whnnqysqiclf6fby5x81i4mjdvckidgdyjprf"; depends=[abind boot car checkmate lavaan lme4 MBESS multilevel nlme plyr psych str2str]; }; questionr = derive2 { name="questionr"; version="0.7.8"; sha256="1abbnxnmljnn6ak55l4yrihr6fwrhzsb1rd7h8r0dijjwsgyawmg"; depends=[classInt highr htmltools labelled miniUI rlang rstudioapi shiny styler]; }; queuecomputer = derive2 { name="queuecomputer"; version="1.2.0"; sha256="0qlcj4rqfkp8qanzwi1p2s7r89x5w6aa8zwkcl7rqapbd4nwayhc"; depends=[dplyr Rcpp RcppArmadillo tidyr]; }; queueing = derive2 { name="queueing"; version="0.2.12"; sha256="0hw1ykm24cjpfwh7ac7fjf7mhc59mq8wy2g07aacpy5ibwi8bbsf"; depends=[]; }; @@ -15677,10 +15911,10 @@ in with self; { quickNmix = derive2 { name="quickNmix"; version="1.1.1"; sha256="01gnvnpfxry354qf772m187mfvjigqngjpi1k9y1g5nvlv7a4d62"; depends=[doParallel foreach optimParallel]; }; quickPlot = derive2 { name="quickPlot"; version="1.0.2"; sha256="0228mcv6cz74whzxmgcdb79w0k8mibszw4kwnjjs6pljz41rxcbq"; depends=[data_table fpCompare terra]; }; quickReg = derive2 { name="quickReg"; version="1.5.0"; sha256="1l1v3k8albxlaz18l2b2x2ryifq4pbdq6n4q7555hnfcik9rqmw5"; depends=[dplyr ggplot2 nortest psych rlang survival]; }; - quickblock = derive2 { name="quickblock"; version="0.2.0"; sha256="0ij4ivpnkjzdixbq7pg4g1xkb031qawadr22qhzp0q210qhmhc0m"; depends=[distances scclust]; }; + quickblock = derive2 { name="quickblock"; version="0.2.1"; sha256="1pl3cwb4byz3b4s08rahk20ckkwrl977qr4a7cw0pd09qm0qgcq3"; depends=[distances scclust]; }; quickcheck = derive2 { name="quickcheck"; version="0.1.3"; sha256="0rm3pvhyqg1px8fp31cmbmv0zk9mvqhzl8qx9gm51kih2zfrksqy"; depends=[data_table hedgehog hms magrittr purrr testthat tibble]; }; - quickcode = derive2 { name="quickcode"; version="0.5"; sha256="0m4x315k431wjb4nv2z615nwcp4np1ad68kwrxfk6acpa6ynr5ah"; depends=[Polychrome rstudioapi]; }; - quickmatch = derive2 { name="quickmatch"; version="0.2.1"; sha256="1qfslhjlbjpzigz8n6b7w41g8pwdiwri091ivd5igp1xy5pv8a3w"; depends=[distances sandwich scclust]; }; + quickcode = derive2 { name="quickcode"; version="0.6"; sha256="0vkpqlf1y5sczjpq539s3rwpqy3wv824nc2lh82rrfcpv7kxgn5m"; depends=[Polychrome rstudioapi]; }; + quickmatch = derive2 { name="quickmatch"; version="0.2.2"; sha256="0y1yss83q4mpdb5ipldg2080vrnc5725452zrs89gxnsykx1qv6j"; depends=[distances sandwich scclust]; }; quickpsy = derive2 { name="quickpsy"; version="0.1.5.1"; sha256="0dfqlpghnw79idw3ir03cxx9n88sqs5p14jz7jgpkdwvjpw1y4q9"; depends=[DEoptim dplyr ggplot2 MPDiR]; }; quickregression = derive2 { name="quickregression"; version="0.2"; sha256="1z0sspi8q7dvgxqbj5na56v458pv6jhxrssnm6j23156dchgw39h"; depends=[car]; }; quid = derive2 { name="quid"; version="0.0.1"; sha256="10qfby1w3q3z0vwqk3nnxxlf62cr5v60ipagx0wb79vanl318pp0"; depends=[BayesFactor checkmate dplyr ellipsis ggplot2 janitor magrittr Matrix MCMCpack purrr rlang stringr tibble tidyr tidyselect]; }; @@ -15694,7 +15928,7 @@ in with self; { qut = derive2 { name="qut"; version="2.2"; sha256="1jsp3sv1631ar1sad8fy4l60ar2pbi20g50yz9mhs83427n3l63b"; depends=[flare glmnet lars Matrix]; }; qvcalc = derive2 { name="qvcalc"; version="1.0.3"; sha256="17sr4100ciy5jp0b8sxvqjxf4m176ayzd5yyaw40ri4xf6h0z7la"; depends=[]; }; qwalkr = derive2 { name="qwalkr"; version="0.1.0"; sha256="0mxzx782lvdrm0hx0v6xgzvw3r9zlfp9bz1vss2l59fgdqlhavn4"; depends=[lifecycle]; }; - qwraps2 = derive2 { name="qwraps2"; version="0.5.2"; sha256="1ars25aa50fn6m4v423pzs4rkplxhpi26qi3aq7f39bgmqpnpy83"; depends=[dplyr ggplot2 knitr Rcpp RcppArmadillo rlang xfun]; }; + qwraps2 = derive2 { name="qwraps2"; version="0.6.0"; sha256="06i3h6ydjfvy7qrhzznsb272r843fgvykfsgaviq83gi8k5c5i00"; depends=[ggplot2 knitr Rcpp RcppArmadillo xfun]; }; r_blip = derive2 { name="r.blip"; version="1.1"; sha256="1p33g6i6fq9c27d5ix9nd8prv90i4hrf91x34bldlw8041sjqxm0"; depends=[bnlearn foreign]; }; r_jive = derive2 { name="r.jive"; version="2.4"; sha256="12zjzjjy1dwhr1gxb5029p5l3wjhwaysja4zf6insdnx1fd0ybxd"; depends=[abind gplots]; }; r_proxy = derive2 { name="r.proxy"; version="0.1.3"; sha256="1v7x23lk5zzzilv6lpmajh2wa1ana330v2607rm816kir8k6ywa0"; depends=[curl httr jsonlite]; }; @@ -15704,21 +15938,21 @@ in with self; { r2d3 = derive2 { name="r2d3"; version="0.2.6"; sha256="15mphywsr0603ipbgzac65n1nj7m77fmw3ypc33p9ng4fllg035r"; depends=[htmltools htmlwidgets jsonlite rstudioapi]; }; r2dictionary = derive2 { name="r2dictionary"; version="0.2"; sha256="09xsmgb1vpqafn9z4yh64qc3gwpd1rpiyj4vpagck8779rxdkqph"; depends=[rstudioapi stringr]; }; r2dii_analysis = derive2 { name="r2dii.analysis"; version="0.3.0"; sha256="11bhhwigybrcr8nbrdwbv6a9rk944la5apnn5y3ahvr457jqdjsv"; depends=[dplyr glue lifecycle magrittr r2dii_data rlang tidyr tidyselect zoo]; }; - r2dii_data = derive2 { name="r2dii.data"; version="0.4.0"; sha256="1jsrdrymdcb4hxi35dn6mpvhikbjzbgm9ycqdh3cfq75c22q600b"; depends=[lifecycle]; }; + r2dii_data = derive2 { name="r2dii.data"; version="0.4.1"; sha256="1sf8jyzn9ly8hn1fdph440pl666hcgpjds51h8apprqivn3ky9cv"; depends=[lifecycle]; }; r2dii_match = derive2 { name="r2dii.match"; version="0.1.4"; sha256="1nb0yik39wdcc22c0clszg9j3xk5sm5i9rzzcyj7zij55pcak7np"; depends=[data_table dplyr glue lifecycle magrittr purrr r2dii_data rlang stringdist stringi tibble tidyr tidyselect]; }; r2dii_plot = derive2 { name="r2dii.plot"; version="0.3.1"; sha256="090nb09dypsh13mridxiib32vm3fc49r1237rws5wzj4w3icyy6n"; depends=[dplyr forcats ggplot2 ggrepel glue lifecycle magrittr r2dii_data rlang scales stringr]; }; r2glmm = derive2 { name="r2glmm"; version="0.1.2"; sha256="0iim92blpa59vgz97c2pi05yhbjjmaffdbkbmk5kplfb2vmazgiy"; depends=[afex data_table dplyr ggplot2 gridExtra lmerTest MASS Matrix mgcv pbkrtest]; }; - r2mlm = derive2 { name="r2mlm"; version="0.3.5"; sha256="1zr30jzls7yypf221m4w6g507j9f9s2hwb68a7qpmwxngibbc6d6"; depends=[dplyr lme4 magrittr nlme rlang rockchalk stringr tidyselect]; }; + r2mlm = derive2 { name="r2mlm"; version="0.3.7"; sha256="1gsmmwgm50cfmzqpm6khlfkgr65x9q7qnm821x46cw9yi64ip5an"; depends=[dplyr lme4 magrittr nlme rlang rockchalk stringr tidyselect]; }; r2pmml = derive2 { name="r2pmml"; version="0.27.1"; sha256="1liixrwrr23k96rkl3ijfcvxmfh43ffj8y7qr2zr50c1ampipnkr"; depends=[]; }; r2pptx = derive2 { name="r2pptx"; version="0.1.0"; sha256="12p3018b514kk1yxm1xyc0835j34zvpr1fz8k5rpiz30fbxjip58"; depends=[glue officer]; }; r2r = derive2 { name="r2r"; version="0.1.1"; sha256="0vp0ak88m3ssca8b8kxf9w6qkxsdy0qs6cngrr9gqvbrnx0gh9j6"; depends=[digest rlang]; }; - r2redux = derive2 { name="r2redux"; version="1.0.16"; sha256="013g3zp7h53yfw0lasnp8c6dp3n9mrsapmwb071x2cnlb385sm6v"; depends=[]; }; + r2redux = derive2 { name="r2redux"; version="1.0.17"; sha256="07666saxzxy48i2dd0gi0m1x912dn5s78m9rqriwnavnx76ca20i"; depends=[]; }; r2resize = derive2 { name="r2resize"; version="1.8"; sha256="0cc6bwk5gahik787z7xbcdr2mbrxvkywsrgc34s9mlxz8x4n1qym"; depends=[DT nextGenShinyApps shiny]; }; - r2rtf = derive2 { name="r2rtf"; version="1.1.0"; sha256="0a9lx311qb4yrs68271di8dmy8dgjqd1mv4pibwavkb2x86jxsrp"; depends=[]; }; + r2rtf = derive2 { name="r2rtf"; version="1.1.1"; sha256="0lhz6ay2f250hqalz96h4x8pshg8v8zljzz3x9lvrdsygcc8hjyn"; depends=[]; }; r2shortcode = derive2 { name="r2shortcode"; version="0.1"; sha256="03djy8m146k31xgvwcbrd1nzwj4wdlvvwzgviv80kskgr6ld9jrj"; depends=[magrittr stringr]; }; r2social = derive2 { name="r2social"; version="1.0"; sha256="1jmhq2qfh3wn47ysl8lairhj7zibiq0dw5nfx0ki1d3vi6f7bv5r"; depends=[htmltools shiny]; }; r2spss = derive2 { name="r2spss"; version="0.3.2"; sha256="1d0znbw0bmgl8k9xwz78lmidh8338n3vq4f9qyqmb87nvjmiilhl"; depends=[car ggplot2 scales]; }; - r2sundials = derive2 { name="r2sundials"; version="6.5.0-3"; sha256="15l9a8lhyjrv3ch9c46zlhj6hkx0bnxvq3l1cjny98plwmz2ark6"; depends=[Rcpp RcppArmadillo rmumps]; }; + r2sundials = derive2 { name="r2sundials"; version="6.5.0-4"; sha256="03ibv93yh7idjrrrkjdbpsi4pnb3rjd48qdlqa89w0wn99lf5qqd"; depends=[Rcpp RcppArmadillo rmumps]; }; r2symbols = derive2 { name="r2symbols"; version="1.4"; sha256="18q4jlc6agbpryv34bjjx49srq57m3731g13rcfdidk32kfgj7l7"; depends=[htmltools jsonlite]; }; r3PG = derive2 { name="r3PG"; version="0.1.6"; sha256="0sr5mxqd1pck4fcn3sh66qdn4kzyibzxmr422c77j7hlqcmqm27n"; depends=[]; }; r3dmol = derive2 { name="r3dmol"; version="0.1.2"; sha256="06wzszqcy50gks1bss81j1l2a4adi271pnz6310w57g681q1ng19"; depends=[bio3d htmlwidgets magrittr]; }; @@ -15736,7 +15970,7 @@ in with self; { rAmCharts = derive2 { name="rAmCharts"; version="2.1.15"; sha256="0fcspbmzyyk6hinpjp29dv2banm0gssn9vy2zjf2p498hmysy3db"; depends=[data_table htmltools htmlwidgets knitr pipeR yaml zoo]; }; rAmCharts4 = derive2 { name="rAmCharts4"; version="1.6.0"; sha256="0lpy2mpflhryxg96miz64nqrf5f97c4h78cs0bpf5qn33jci66wh"; depends=[base64enc htmltools htmlwidgets jsonlite lubridate minpack_lm reactR shiny stringr xml2]; }; rAverage = derive2 { name="rAverage"; version="0.5-8"; sha256="09yap3qv02k5nidi6a4png9xa5yy7cb8hg8s2dq99wnc88s42d26"; depends=[]; }; - rBDAT = derive2 { name="rBDAT"; version="0.10.0"; sha256="1vndnip3rpvlgmnmi91r23nyr59v6dmm8m5i2yxi7pim1l35323r"; depends=[]; }; + rBDAT = derive2 { name="rBDAT"; version="1.0.0"; sha256="02s91p6nvxbm3wflvs75aln3zw0g6535sxrmzkhywcc9k3x63926"; depends=[]; }; rBMF = derive2 { name="rBMF"; version="1.1"; sha256="16yg1k7vv88q421nk1a70626c7c54bwnb3x7kiyxv2c0ha00f3g8"; depends=[Matrix Rcpp]; }; rBahadur = derive2 { name="rBahadur"; version="1.0.0"; sha256="1gqr70v5xklzncqrn72879yg10hjz059r4wsvq5hq9jf4gfaqsgz"; depends=[]; }; rBayesianOptimization = derive2 { name="rBayesianOptimization"; version="1.2.0"; sha256="0gwdzv4wl4n940ph23yhjh0s192k9visvivww5k1kmy2b1j88cva"; depends=[data_table foreach GPfit magrittr]; }; @@ -15752,7 +15986,7 @@ in with self; { rDNAse = derive2 { name="rDNAse"; version="1.1-1"; sha256="0cl51q61kwvdsm5f49cjjbzggqam1fnr6gp15cmy6m2yahyxg1lk"; depends=[]; }; rDataPipeline = derive2 { name="rDataPipeline"; version="0.54.1"; sha256="0i0vb7gsjshh1wn0lksdma51xdyn6qw54j02cb0xmzcg896gl2p9"; depends=[assertthat cli configr dplyr git2r httr jsonlite openssl R6 rhdf5 semver usethis yaml]; }; rDecode = derive2 { name="rDecode"; version="0.1.0"; sha256="1d0rrhycw9anhvx6czz7axkzhzqprdgi9sqfglmc962zf1x3hmn2"; depends=[]; }; - rEDM = derive2 { name="rEDM"; version="1.15.0"; sha256="1mbnawfqlinj5djkgr1hmaas0qjiiywxx15p4qlw7wxk36kjf4lf"; depends=[Rcpp RcppThread]; }; + rEDM = derive2 { name="rEDM"; version="1.15.1"; sha256="01j4pjxjj5g13hnnvfgkja68qy1cwdiaghziz5i963i8gvw19sil"; depends=[Rcpp RcppThread]; }; rEMM = derive2 { name="rEMM"; version="1.2.0"; sha256="1qicpxxbm8gc5nb2j2n8sa5i342dw8pjgmbw01963vsybhkwzsim"; depends=[cluster clusterGeneration igraph MASS proxy stream]; }; rENA = derive2 { name="rENA"; version="0.2.4"; sha256="0yfmdfw45azyzcy7rf5xsannrlranbxpgfsb52rl6vvd681p4r4x"; depends=[concatenate data_table doParallel foreach magrittr plotly R6 Rcpp RcppArmadillo scales]; }; rFSA = derive2 { name="rFSA"; version="0.9.6"; sha256="1fxd194iq8jnlsnj76mjq2f6db7ln641qwfsf5v63kx3qqhn8x5s"; depends=[hash rPref tibble tidyr]; }; @@ -15762,7 +15996,7 @@ in with self; { rGroovy = derive2 { name="rGroovy"; version="1.3"; sha256="172vm4diygzi4ipmw8bl03k0x3aps0h1vkvwvw539kamy7xb5w98"; depends=[rJava]; }; rIntervalTree = derive2 { name="rIntervalTree"; version="0.1.0"; sha256="0xd6wcra4zvphfgnz1rnnslx96p840zlgms367370xm4hyg6d37x"; depends=[]; }; rIsing = derive2 { name="rIsing"; version="0.1.0"; sha256="1208lwfk9j8gghj8xf6i8v6s18h89ydqsd4jq3r88n403yzbzzck"; depends=[data_table Rcpp RcppEigen]; }; - rJava = derive2 { name="rJava"; version="1.0-6"; sha256="1ijqhvnb8ab38cp9pwdf7zq7xqqlm6x94gkrab2dd98p6d4x1472"; depends=[]; }; + rJava = derive2 { name="rJava"; version="1.0-10"; sha256="0srrjfqrcp7b6k62qv3d18r97k6kbcz0g4pn2y0rv0f5wlc6i0mm"; depends=[]; }; rKIN = derive2 { name="rKIN"; version="1.0.2"; sha256="0dp8m7x5a9glz7yvbv207j3l0226xjxmgf0k2x6rv7zwg9v6y5qk"; depends=[dplyr ggplot2 ks MASS randomcoloR RColorBrewer sf shades]; }; rKOMICS = derive2 { name="rKOMICS"; version="1.3"; sha256="0v04f9kjdwxdggk3cv29hrnbykz3yq523gxh1kh7vls9xpm6c5wr"; depends=[ape circlize ComplexHeatmap dplyr factoextra FactoMineR ggplot2 ggpubr magrittr reshape2 stringr]; }; rKenyaForex = derive2 { name="rKenyaForex"; version="0.1.0"; sha256="1y5hdc1n8kan42vzg6kpfgz68s1bpd93pavcisxh03c76zkf9ap9"; depends=[]; }; @@ -15772,16 +16006,16 @@ in with self; { rLakeAnalyzer = derive2 { name="rLakeAnalyzer"; version="1.11.4.1"; sha256="1bwg8mzddsc39km85b41bxp2hwqmb4g5a3010f6yp1qlgcb9rmj1"; depends=[plyr]; }; rMEA = derive2 { name="rMEA"; version="1.2.2"; sha256="18manb926yd6a3b6im7g2vf1cbvvdkg15i6zl223npckhna2nbx0"; depends=[]; }; rMIDAS = derive2 { name="rMIDAS"; version="1.0.0"; sha256="18z9fkbvyz290qcv0nmsrk8hchr5niwmhaj7gx3gh7m1ldw53asw"; depends=[data_table mltools rappdirs Rdpack reticulate]; }; - rMOST = derive2 { name="rMOST"; version="1.0.0"; sha256="1g8g7hl937884l96cyz9wj486qgfm7lla47q8lmzn20fx1izjddr"; depends=[nloptr]; }; + rMOST = derive2 { name="rMOST"; version="1.0.1"; sha256="0lhf7cnnasnhainxh6s73379c7bwcsiqqv5vwgy9r3l2dyn97a2h"; depends=[nloptr]; }; rMR = derive2 { name="rMR"; version="1.1.0"; sha256="0da1hclfnnlkp9by6zf2p079643p8nimplr9p3ipbjdy739j344z"; depends=[biglm]; }; - rMVP = derive2 { name="rMVP"; version="1.0.7"; sha256="0n4nffwxllcc81346h57yccqcc535skpnx9girlmskpzbaj14fmb"; depends=[BH bigmemory MASS Rcpp RcppArmadillo RcppEigen RcppProgress]; }; + rMVP = derive2 { name="rMVP"; version="1.0.8"; sha256="1k7n8hmwybbp41iqgckkvzqa75kl0ikl5mpq2c5ynmlfkr244by8"; depends=[BH bigmemory MASS Rcpp RcppArmadillo RcppEigen RcppProgress]; }; rMultiNet = derive2 { name="rMultiNet"; version="0.1"; sha256="0r4zdh91f87xzjr85i8iafghpi60hlmjp763nm025n4h33qvvrfl"; depends=[dbscan geigen glmnet Matrix plotly rTensor]; }; rNOMADS = derive2 { name="rNOMADS"; version="2.5.1"; sha256="0zv0b8v67g71c8c9212zsj4bwld173s930p3qxdp23ax3l7l3igi"; depends=[fields GEOmap httr MBA rvest stringr uuid XML]; }; rNeighborGWAS = derive2 { name="rNeighborGWAS"; version="1.2.4"; sha256="1j2rafli0ns34ms5s8zjxwyvlxhl88r5krw0qqzc3igd9sc0mjvn"; depends=[gaston Matrix RcppParallel]; }; rNeighborQTL = derive2 { name="rNeighborQTL"; version="1.1.2"; sha256="1balbky8jyvyn2v56dvx7b80gpys40pfslqrsv25sywmp0cqy68p"; depends=[gaston Matrix qtl]; }; rODE = derive2 { name="rODE"; version="0.99.6"; sha256="0l518ghfw6283kckqcbh45a35vd73njy05v3dwghhhjdj7v3km8b"; depends=[data_table]; }; rPACI = derive2 { name="rPACI"; version="0.2.2"; sha256="10i9lx8h67x3ldysjqgfi6dqbclj7pwfg15wxzr2vw3qzsjyb9cz"; depends=[bnlearn ggplot2 ggpubr rlang tidyr]; }; - rPAex = derive2 { name="rPAex"; version="1.0.4"; sha256="08r3j1m4dcmxdzsxjalbvi7nvca91ma0v06vy2pki6pp8f91pbdg"; depends=[agricolae terra]; }; + rPAex = derive2 { name="rPAex"; version="1.0.5"; sha256="1gx0hgyizhkv6wkdi4wrfc5vl2j548x418gff0ysq2nmifm5lpcy"; depends=[agricolae terra]; }; rPBK = derive2 { name="rPBK"; version="0.2.2"; sha256="1g63gz7zhwx5icabcm15n2hpnp3v932b63k0jgl8623dwdybw15d"; depends=[BH ggplot2 Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; rPackedBar = derive2 { name="rPackedBar"; version="0.2.2"; sha256="1nh0kvj4bqkinczj8llcgy63ibsnk9vgsvm0vqg8g526x0vffdma"; depends=[data_table plotly scales shiny]; }; rPanglaoDB = derive2 { name="rPanglaoDB"; version="0.2.1"; sha256="1ykzih3idgp2yhbw4039hhhzv0nmrmn3wx2c4dxmgp5qzhrg42nf"; depends=[Matrix pbapply Seurat XML xml2]; }; @@ -15795,7 +16029,8 @@ in with self; { rSEA = derive2 { name="rSEA"; version="2.1.1"; sha256="18108ds65ykxygbw1s4i5rb1ngzwymv1x3dhcv1lcwkmqplnaar9"; depends=[ggplot2 hommel]; }; rSFA = derive2 { name="rSFA"; version="1.5"; sha256="17jabv64rgaxs5kx579vjrhcw2k08c6ah6a11cswl8v9h0vjjz8i"; depends=[MASS]; }; rSHAPE = derive2 { name="rSHAPE"; version="0.3.2"; sha256="0z6dizsxlkmaymbd24b1m1i8kmndcf21nxxnyfzq6gvdii7bal4h"; depends=[abind DBI doParallel evd foreach RSQLite sn VGAM]; }; - rSPDE = derive2 { name="rSPDE"; version="2.3.2"; sha256="1f0q2qykhdawbdldp1kvjqlxyrnq4zxa6vmizdy1l6jk1xcawgds"; depends=[Matrix]; }; + rSPARCS = derive2 { name="rSPARCS"; version="0.1.1"; sha256="1693i1jnk2py46d1cngi8gqv8bq3i0fc7invliyv6lfpshwbi388"; depends=[data_table dplyr geosphere plyr raster sf sp tigris]; }; + rSPDE = derive2 { name="rSPDE"; version="2.3.3"; sha256="1l03rd8knh9mws1fbagspvpyli1sdgijslc0axwwbfjqxcpqg6yq"; depends=[broom fmesher lifecycle Matrix]; }; rSRD = derive2 { name="rSRD"; version="0.1.7"; sha256="1srvv49xxkq2nx7fvbn3d2hr4v6ypkxgz6ms1l89zgd0ypdgmypa"; depends=[dplyr ggplot2 ggrepel gplots janitor Rcpp rlang stringr tibble]; }; rSpectral = derive2 { name="rSpectral"; version="1.0.0.10"; sha256="12fgyjlk4a6gm2ccjw4mh47ccln2i7iklqammmk8y20i3hd3mh6x"; depends=[graph igraph Rcpp RcppArmadillo Rdpack]; }; rStrava = derive2 { name="rStrava"; version="1.3.0"; sha256="0k2nz17s4rlb86gmr0c4r56abw4j7dqshjk599kqy28jqmf2nkyy"; depends=[dplyr geosphere ggplot2 ggspatial googleway httr magrittr plyr prettymapr purrr RCurl rvest tibble tidyr XML xml2]; }; @@ -15825,9 +16060,9 @@ in with self; { radar = derive2 { name="radar"; version="1.0.0"; sha256="1wh5j3cfbj01jx2kbm9ca5cqhbb0vw7ifjn426bllm4lbbd8l273"; depends=[]; }; radarBoxplot = derive2 { name="radarBoxplot"; version="1.0.5"; sha256="1lmgh8j3c6jiiwpdz9l5zd07xcv87laxnj789bpqnmxa0szsfngl"; depends=[]; }; radarchart = derive2 { name="radarchart"; version="0.3.1"; sha256="0gcxnbgj8ja1m4wzhbjy67m6zphf0c5ni9yx7sr7f0abm03ry753"; depends=[htmltools htmlwidgets]; }; - radiant = derive2 { name="radiant"; version="1.6.0"; sha256="1nn17yq530mb0ayx25dv5dn9fr1qvbll7ih1hnyww7gix6rgji9p"; depends=[r_import radiant_basics radiant_data radiant_design radiant_model radiant_multivariate shiny]; }; + radiant = derive2 { name="radiant"; version="1.6.1"; sha256="19h0l41n5qjqy0g3ga09a44anj1c429n4fakpxh3glhwv5xy4314"; depends=[r_import radiant_basics radiant_data radiant_design radiant_model radiant_multivariate shiny]; }; radiant_basics = derive2 { name="radiant.basics"; version="1.6.0"; sha256="1dr53n39a7g4dar6zxmdkrzqqksc124s8whj6idy97jg9vj3qjsf"; depends=[dplyr ggplot2 lubridate magrittr patchwork polycor psych r_import radiant_data rlang scales shiny tidyr]; }; - radiant_data = derive2 { name="radiant.data"; version="1.6.2"; sha256="0227ry366v9kmksa4vyjmhix0jbl894gdc6gckg209wna35fn20p"; depends=[arrow base64enc broom bslib car curl dplyr DT ggplot2 glue jsonlite knitr lubridate magrittr markdown MASS patchwork plotly png psych r_import randomizr readr readxl rlang rmarkdown rstudioapi scales shiny shinyAce shinyFiles stringi tibble tidyr writexl]; }; + radiant_data = derive2 { name="radiant.data"; version="1.6.3"; sha256="1nwiw5dps0030f893gs0fixis6xigfr8y8rqhi3l505yx2bsrjbj"; depends=[arrow base64enc broom bslib car curl dplyr DT ggplot2 glue jsonlite knitr lubridate magrittr markdown MASS patchwork plotly png psych r_import randomizr readr readxl rlang rmarkdown rstudioapi scales shiny shinyAce shinyFiles stringi tibble tidyr writexl]; }; radiant_design = derive2 { name="radiant.design"; version="1.6.1"; sha256="0rv9cpw80rhc47fza44z6a9jkij07ajpivr2ky0y2hixzf5c8h5a"; depends=[AlgDesign dplyr magrittr mvtnorm polycor pwr r_import radiant_data randomizr shiny]; }; radiant_model = derive2 { name="radiant.model"; version="1.6.3"; sha256="182w8wj3zh2ynhxscy9d4wrfc3n3yj89569w7102l1rxyrssi755"; depends=[broom car data_tree DiagrammeR dplyr e1071 ggplot2 ggrepel lubridate magrittr NeuralNetTools nnet patchwork pdp psych r_import radiant_basics radiant_data ranger rlang rpart sandwich scales shiny stringi stringr tidyr tidyselect vip xgboost yaml]; }; radiant_multivariate = derive2 { name="radiant.multivariate"; version="1.6.1"; sha256="0xqn7j8r2v5j8ajkj8ghdrnkhfi10m2351kr926b3qg4898ywfwn"; depends=[car clustMixType dplyr ggplot2 ggrepel gower GPArotation lubridate magrittr MASS patchwork polycor psych r_import radiant_data radiant_model rlang scales shiny]; }; @@ -15836,9 +16071,8 @@ in with self; { radous = derive2 { name="radous"; version="0.1.3"; sha256="1pip3givlkzb8i65nz6w724818jjr8j8nizpc3g35r9bvpmn7c2y"; depends=[checkmate curl glue httr readr]; }; radsafer = derive2 { name="radsafer"; version="2.3.0"; sha256="0zw0dn8pi1yn786fcmm414dap77wdni43dma2pyjbxb15zagpmli"; depends=[dplyr ggplot2 ggthemes lifecycle magrittr RadData readr rlang scatterplot3d stringr]; }; rafalib = derive2 { name="rafalib"; version="1.0.0"; sha256="1dmxjl66bfdgrybhwyaa8d4i460liqcdw8b29a6w7shgksh29m0k"; depends=[RColorBrewer]; }; - ragg = derive2 { name="ragg"; version="1.2.6"; sha256="1izpw02b8kq6pm37kvxp9pbd9srvfp5bzfjg27j9hbmm794xq50h"; depends=[systemfonts textshaping]; }; + ragg = derive2 { name="ragg"; version="1.2.7"; sha256="17qc53scxf02f8hlpyirsjdav4wjh3mk6q04npf82y0j5mk1hynp"; depends=[systemfonts textshaping]; }; rags2ridges = derive2 { name="rags2ridges"; version="2.2.7"; sha256="09dp04y8wl7cws5y94k9j2rlrmm2ci1lk8y77cb17lxr0i1yv6gb"; depends=[expm fdrtool ggplot2 graph gRbase Hmisc igraph RBGL Rcpp RcppArmadillo reshape RSpectra sfsmisc snowfall]; }; - ragt2ridges = derive2 { name="ragt2ridges"; version="0.3.4"; sha256="17i3z0p3a4dqa0bch5l1r830w5nlxhdg71y82jipp6cfiwli588z"; depends=[abind Biobase CGHbase expm fdrtool igraph MASS Matrix mvtnorm rags2ridges Rcpp RcppArmadillo]; }; ragtop = derive2 { name="ragtop"; version="1.1.1"; sha256="0vgc2q71g8ysccq19kbk9a4swxgd5qj91xm4bshfgdg5chxqnb50"; depends=[futile_logger limSolve]; }; rai = derive2 { name="rai"; version="1.0.0"; sha256="0qimfzchbrarkwmv3mxxbdgvqzk16sc8m1h140zm0cnfgr2pvi5p"; depends=[dplyr ggplot2 readr rlang]; }; rainbow = derive2 { name="rainbow"; version="3.7"; sha256="1cldipi3cb55d434wv03ymwygbisfwgq2b84gwwkgqpfal2xk78m"; depends=[cluster colorspace hdrcde ks MASS pcaPP]; }; @@ -15864,10 +16098,11 @@ in with self; { random_polychor_pa = derive2 { name="random.polychor.pa"; version="1.1.4-5"; sha256="1a8mnggdmyklxzqid81a88sx6v5jvhfnx5khvy21idsd8pp7pav2"; depends=[boot MASS mvtnorm nFactors psych sfsmisc]; }; randomForest = derive2 { name="randomForest"; version="4.7-1.1"; sha256="1micz9794j7xmj755ln2692rzip8azndflxgdg6xn3j86issi7pm"; depends=[]; }; randomForestExplainer = derive2 { name="randomForestExplainer"; version="0.10.1"; sha256="1ny8c3vn2zvdx12avwvlm4lp648jigkrkcvnhf5qmj8rh0w069v0"; depends=[data_table dplyr DT GGally ggplot2 ggrepel randomForest ranger reshape2 rmarkdown]; }; - randomForestSRC = derive2 { name="randomForestSRC"; version="3.2.2"; sha256="1jsph7rzllnvh5pzsv520c836la0l8693cq7ww1bjsm8nn0fsf8b"; depends=[data_tree DiagrammeR]; }; + randomForestSRC = derive2 { name="randomForestSRC"; version="3.2.3"; sha256="0vsgdpacqfhwd958vn3wmf8lnh3wb74bgq37qzb3c02fbwilz8lc"; depends=[data_tree DiagrammeR]; }; randomForestVIP = derive2 { name="randomForestVIP"; version="0.1.3"; sha256="1blfgkgxgzda1rprsm6pdclyhfll238b7jb8sxhgdwcf9s80bnqv"; depends=[car dplyr ggplot2 gridExtra minerva randomForest tidyr]; }; randomGLM = derive2 { name="randomGLM"; version="1.10-1"; sha256="0557dpca39nj1451l28x4xxfr92cf48gy7crlfhnv4k91kglwcnz"; depends=[doParallel foreach geometry Hmisc MASS matrixStats survival]; }; randomLCA = derive2 { name="randomLCA"; version="1.1-3"; sha256="1hjkglqdr9czjr91iwshcdb0acrlk461x896rca4bzc9jv8in9cy"; depends=[boot doParallel doRNG fastGHQuad foreach lattice Matrix Rfast]; }; + randomMachines = derive2 { name="randomMachines"; version="0.1.0"; sha256="1b34jwvs2x67kbjmxa5rpxlrqsvghgnyddz250nwpchj2s4lgc17"; depends=[kernlab]; }; randomNames = derive2 { name="randomNames"; version="1.5-0.0"; sha256="1lv1vqb4wgs0j1gqy84dpa30qsvbp6928zpshczpw87yf32k71vh"; depends=[crayon data_table toOrdinal]; }; randomUniformForest = derive2 { name="randomUniformForest"; version="1.1.6"; sha256="1qr7c0pkqn2a9knpbc2ch6chwwrvfw1sr5949mkgml36xyv1syv7"; depends=[cluster doParallel foreach ggplot2 iterators MASS pROC Rcpp]; }; randomcoloR = derive2 { name="randomcoloR"; version="1.1.0.1"; sha256="0rqh1zrdza12qq7475f77yvryhh4hj0pg25lb8ywrcljgaj53bnb"; depends=[cluster colorspace Rtsne scales stringr V8]; }; @@ -15882,10 +16117,10 @@ in with self; { rangeBuilder = derive2 { name="rangeBuilder"; version="2.1"; sha256="1r82rmmfwbfl2lxcsnl9xwyr2932jv43cjlvlihi5172irpfgvpw"; depends=[alphahull pbapply Rcpp rnaturalearth sf stringi terra units]; }; rangeMapper = derive2 { name="rangeMapper"; version="2.0.3"; sha256="1wasvd3k2c6crl2q27d9q88x21pv66b6h9x3msfdcw0k0h719dzc"; depends=[data_table DBI exactextractr future future_apply glue magrittr progressr raster RSQLite sf]; }; rangeModelMetadata = derive2 { name="rangeModelMetadata"; version="0.1.5"; sha256="0yv4w8vy7yjmkg8gkmgy05khmvw2h7v8ag5hzfm8km120m8215i8"; depends=[BIEN shiny spocc terra]; }; - ranger = derive2 { name="ranger"; version="0.15.1"; sha256="0bibv9xf6w8k8nsc13f2yd4kx99aq0i758h3wfh089szgkpdjrad"; depends=[Matrix Rcpp RcppEigen]; }; + ranger = derive2 { name="ranger"; version="0.16.0"; sha256="12c52gqqwaaid5b062gad18ir1vala1z3a0z5j4af1xqzlxgk583"; depends=[Matrix Rcpp RcppEigen]; }; + rankCorr = derive2 { name="rankCorr"; version="1.0.1"; sha256="0if7kp3f4dz164kw4lj7s4fq9qfjxgm6vz2i9p93hnipc8cg3azb"; depends=[rankICC rms]; }; rankFD = derive2 { name="rankFD"; version="0.1.1"; sha256="0p8kkscjnfssz58gp2kvpvw206vhqi6m1rknzs35l5ajck3gqzrm"; depends=[coin lattice MASS multcomp mvtnorm]; }; - rankICC = derive2 { name="rankICC"; version="1.0.1"; sha256="0rr9vncd6168nijxg8i8xcwsx94vc687ayksqbq6lp4vnz4kflmw"; depends=[]; }; - rankUncertainty = derive2 { name="rankUncertainty"; version="1.0.2.0"; sha256="0w9b3vdlx2kjviz4790lrmbzb8i1lrckiy1jxzl9kxycp1kjqkwa"; depends=[cpp11 magrittr Rcpp]; }; + rankICC = derive2 { name="rankICC"; version="1.0.2"; sha256="1qky7g1g0zjpjwpmh6c5qaki2c6r5vzgl63klmc4myz9d3fh6sb3"; depends=[]; }; rankdifferencetest = derive2 { name="rankdifferencetest"; version="2021-11-25"; sha256="11isc6fjaicyibnbc315036wp7m670ja6kg4xq5s2x72k076v55f"; depends=[coin modeltools Rdpack]; }; rankdist = derive2 { name="rankdist"; version="1.1.4"; sha256="1xqrkss8d5vv3blqpvrvdczsygphbx259hy9j7w9b2ahssw8cjr5"; depends=[hash optimx permute Rcpp]; }; rankhazard = derive2 { name="rankhazard"; version="1.1.0"; sha256="0kljn9b74alrd22b5pwfnamdbaqi2wa2z6yzpmgpfs3x0hv72fw7"; depends=[survival]; }; @@ -15895,7 +16130,7 @@ in with self; { ranktreeEnsemble = derive2 { name="ranktreeEnsemble"; version="0.22"; sha256="1hn66622p3jbm1s0pf438lmws27pwab1qv1zwnsph8zg9qprb2nm"; depends=[data_tree gbm randomForestSRC Rcpp]; }; rapiclient = derive2 { name="rapiclient"; version="0.1.3"; sha256="1pm4kdga2nz1cpmchdb0ad8gr3bqfm84b1kl32cyc0x3x5rr2syz"; depends=[httr jsonlite yaml]; }; rapidjsonr = derive2 { name="rapidjsonr"; version="1.2.0"; sha256="07zdirhbzmvq3cp4xn8ngk1lgxbbabzays315zxbs3sxrz6lzjb2"; depends=[]; }; - rapidoc = derive2 { name="rapidoc"; version="8.4.3"; sha256="1i7f122iigbaah1c3g5vfmnypwilcgc1i3d0l3985s5fjj44dnhn"; depends=[jsonlite]; }; + rapidoc = derive2 { name="rapidoc"; version="9.3.4"; sha256="1nzwf4wx8syl9xpvmqn3mz72nhj80ssnm6wbfwnasg003ccfi43c"; depends=[]; }; rapidphylo = derive2 { name="rapidphylo"; version="0.1.2"; sha256="1q0p43ikfpmza8prjcgf12471d0z0bmid33zyhkngykagrg5j2aa"; depends=[ape phangorn]; }; rapidraker = derive2 { name="rapidraker"; version="0.1.3"; sha256="1dhjsv22rdsv668d8dzdd6pm5xy549iiycv6isjmc5cwj3dp5fyz"; depends=[openNLPdata rJava slowraker]; }; rapidxmlr = derive2 { name="rapidxmlr"; version="0.1.0"; sha256="14pa08yp8xmbqk8wwinz1xsphx75xq6vg8zgzcxc5zgmcf0ja5if"; depends=[]; }; @@ -15905,7 +16140,7 @@ in with self; { rappsflyer = derive2 { name="rappsflyer"; version="0.2.0"; sha256="1n0h4iqnzb5xr531b6nvqsjx4mpsg1gp85av2b9gqg0wrbzzizm7"; depends=[dplyr httr lgr retry stringr tidyr]; }; rapsimng = derive2 { name="rapsimng"; version="0.3.0"; sha256="1zykznmb6qipkj8yxkf33vrvyqhsp0ajk34hnz7js1zvy5n8rd5l"; depends=[dplyr jsonlite magrittr rlang tibble tidyr]; }; raptr = derive2 { name="raptr"; version="1.0.0"; sha256="07p1z8qi991aqy4nx142b4kblx15j1bc22yx1hf3s3cnbcrdfnzl"; depends=[adehabitatHR assertthat BH boot ggplot2 hypervolume ks Matrix mvtnorm PBSmapping RColorBrewer Rcpp RcppEigen scales sf shape sp terra withr]; }; - raqs = derive2 { name="raqs"; version="1.0.1"; sha256="1fa5rdqk6ffjyifijw742l1wmywr3wgrdm3aimvazn9i7bfj4z8m"; depends=[cli httr2]; }; + raqs = derive2 { name="raqs"; version="1.0.2"; sha256="05q6xldr2q59mfn3v4hx20j8ybpkn3zpnz36rrdv1dq8jimfxfj7"; depends=[cli httr2]; }; rare = derive2 { name="rare"; version="0.1.1"; sha256="0j78ilswiaxdp9107psiw8ibxncd7i81z2njhfqf0n7532pbvjss"; depends=[glmnet Matrix Rcpp RcppArmadillo]; }; rareNMtests = derive2 { name="rareNMtests"; version="1.2"; sha256="0nx4ddbbz01dmbkg3ww2dsqwvqn1m04bln0bk1sphq935c548zpb"; depends=[vegan]; }; rarestR = derive2 { name="rarestR"; version="0.1.0"; sha256="1f604bghyp3zkd60yp0vrjmyjf548rmika67bn3zf1b0c53rfq8z"; depends=[]; }; @@ -15918,13 +16153,13 @@ in with self; { rasterImage = derive2 { name="rasterImage"; version="0.4.0"; sha256="191m5k1rbbwziznmxbsq4g55afkw8gb5011i70f3wx3dscr3phxz"; depends=[plotrix]; }; rasterKernelEstimates = derive2 { name="rasterKernelEstimates"; version="1.0.2"; sha256="0az96k8l7yjya5mg5ckda43qy9h8iad5gyyxi1ycld3kzcwiinhj"; depends=[raster]; }; rasterList = derive2 { name="rasterList"; version="0.5.20"; sha256="09w91kjya5bmdi1z6i5m82yaihnzxqh9b3cyadfzd1c68bpsplii"; depends=[raster]; }; - rasterVis = derive2 { name="rasterVis"; version="0.51.5"; sha256="18bsrw629p4pkyhrpjmiyhq73w882bhgpwmkih0gjnw3ywwgx7rs"; depends=[hexbin lattice latticeExtra raster RColorBrewer sp terra viridisLite zoo]; }; - rasterbc = derive2 { name="rasterbc"; version="1.0.1"; sha256="17knrhvy2qkdz5bvhnllfkv8w4cm5gjjninwh66pk1xfrqkd4skg"; depends=[sf terra]; }; + rasterVis = derive2 { name="rasterVis"; version="0.51.6"; sha256="12cl201gwah0bn14ji4nbygayd77w5fck9zkcikhrda5s0chvgb1"; depends=[hexbin lattice latticeExtra raster RColorBrewer sp terra viridisLite zoo]; }; + rasterbc = derive2 { name="rasterbc"; version="1.0.2"; sha256="1fdaakn8d68s3wnqwv2lj89q8lg5p7fgqcl51qrhgxihzz21fl99"; depends=[sf terra]; }; rasterdiv = derive2 { name="rasterdiv"; version="0.3.1"; sha256="01fxi3i1p280n38aaffnnj68w2ri8s5qrapvc44viqv3133n837l"; depends=[foreach progress proxy raster svMisc terra]; }; rasterize = derive2 { name="rasterize"; version="0.1"; sha256="18nrhmq1qmi05rkyr86xsyc8nz0fbdpf2d45h62bbfzbfynqd4qy"; depends=[png]; }; rasterpdf = derive2 { name="rasterpdf"; version="0.1.1"; sha256="0zi54nifbb4dzb29i8rskynblw3z42vzaykwbq30ia5zs9q1bvm5"; depends=[png]; }; rasterpic = derive2 { name="rasterpic"; version="0.2.3"; sha256="05ziry3vxk4blsykvqj73kgfdbvdpi771xfz2xv2873bxkna12xf"; depends=[png sf terra]; }; - ratdat = derive2 { name="ratdat"; version="1.0.0"; sha256="1d4ivllasg1yd3i95rsxl3hkyij5r9a3j83scv3ghx6bx7w79aj4"; depends=[]; }; + ratdat = derive2 { name="ratdat"; version="1.1.0"; sha256="14p8dnc6a3yj98xqa8i90jb8nbwhr4g9drl3djdyswjwiiz30jlg"; depends=[]; }; ratelimitr = derive2 { name="ratelimitr"; version="0.4.1"; sha256="06x759jxr5zcnvg9q120n5bpipkb16piw15kxrpk7i918mby889b"; depends=[assertthat]; }; ratematrix = derive2 { name="ratematrix"; version="1.2.4"; sha256="0azn52d88m1xxckv4g02vraa9gdr5jmsxqwxwaim90p2s8jy33np"; depends=[ape coda corpcor ellipse geiger MASS mvMORPH phylolm Rcpp RcppArmadillo readr]; }; rater = derive2 { name="rater"; version="1.3.1"; sha256="0ipgjhxn8d9g6yv369hckvq84v8rrw5b230zz24h72dy9s2nyr44"; depends=[BH ggplot2 loo Rcpp RcppEigen RcppParallel rlang rstan rstantools StanHeaders]; }; @@ -15938,29 +16173,28 @@ in with self; { raveio = derive2 { name="raveio"; version="0.9.0"; sha256="13nzhhlwv1wmhgbgsdpznhcvj6k289dsmcirx7a803w9yqk9ssnd"; depends=[callr data_table dipsaus edfReader filearray fst globals glue hdf5r jsonlite promises R_matlab R6 ravetools remotes rpymat stringr targets threeBrain yaml]; }; ravelRy = derive2 { name="ravelRy"; version="0.1.0"; sha256="07mywv57rw2b309i2qisbpx1x3sb3z6n2b5gia9bdmb2m4hhpdai"; depends=[dplyr httr jsonlite purrr tibble tidyr]; }; raven_rdf = derive2 { name="raven.rdf"; version="0.2.0"; sha256="12jy3md6d1qwzkks5iljn4h0iv5lj3n39ll7r3fvrxjwh7afvw7r"; depends=[]; }; - ravetools = derive2 { name="ravetools"; version="0.1.2"; sha256="0pvvgiygdkkbvqinwjv6apbm76676ai20nxhg1pdzzhhkkc5c83z"; depends=[digest filearray pracma Rcpp RNiftyReg Rvcg signal waveslim]; }; + ravetools = derive2 { name="ravetools"; version="0.1.3"; sha256="145f86yzd492l6q3nqqjvgykr3riw6v86h80wd84ca1xian5lhd3"; depends=[digest filearray pracma R6 Rcpp RNiftyReg Rvcg signal waveslim]; }; raw = derive2 { name="raw"; version="0.1.8"; sha256="1y2vhpgigzkd2xyj3986wlzm1g3pp99w6fspmhlff5czd73g16is"; depends=[]; }; rawKS = derive2 { name="rawKS"; version="0.1.0"; sha256="1yiw9imhgij49qbm9hk6psb73zngqmxxwnaxq144ydwb7fbk6j0z"; depends=[dplyr ggplot2 magrittr ROCR tidyr]; }; raws_profile = derive2 { name="raws.profile"; version="0.1.0"; sha256="04f7wk7x9j3rb6nn3zqss9vw0h9a4vpcjyilc2vqy0fm2by41xkg"; depends=[stringr tibble withr]; }; - rayimage = derive2 { name="rayimage"; version="0.9.1"; sha256="1vs47zbdmh8ky5zdw7qvs6fbycp7kypzg6mfli2i0z39pcffz3xl"; depends=[gridExtra jpeg png progress Rcpp RcppArmadillo]; }; + rayimage = derive2 { name="rayimage"; version="0.10.0"; sha256="1ss1l8cbm0p7d413s81ncqhd7dqhyd22v5z1z48s9a56pxm2lw5l"; depends=[jpeg png progress Rcpp RcppArmadillo]; }; raymolecule = derive2 { name="raymolecule"; version="0.5.0"; sha256="1dykcm72pqskwfvmvnp0cccg2hlpjcqxhidfq993l1kf2cc0i747"; depends=[httr magrittr PeriodicTable rayrender rayvertex]; }; - rayrender = derive2 { name="rayrender"; version="0.29.6"; sha256="19hhi5a9lq0xrwd7j0fvhff36n437n93awhivk8jk7sdddmqnb9c"; depends=[decido magrittr png progress purrr raster rayimage Rcpp RcppThread spacefillr]; }; + rayrender = derive2 { name="rayrender"; version="0.31.2"; sha256="1h75skbk9vymiq685cljg6k5xx0nlwr458ncm2az4m1aq128735l"; depends=[decido magrittr png progress purrr raster rayimage rayvertex Rcpp RcppThread spacefillr]; }; rayshader = derive2 { name="rayshader"; version="0.35.7"; sha256="14k3604m6b2v2g3n2l442cvb54ag1rmlhvlalmzbpwbjdim86dnv"; depends=[doParallel foreach jpeg magrittr png progress raster rayimage rayrender rayvertex Rcpp RcppArmadillo rgl scales terrainmeshr]; }; raytracing = derive2 { name="raytracing"; version="0.6.0"; sha256="16iwfgh53kj1k3vdb1d0gk80v3qwyk2dxvssry3k43dg9cvmznq3"; depends=[ncdf4 sf units]; }; - rayvertex = derive2 { name="rayvertex"; version="0.7.9"; sha256="1pmbx8xfpwk44qz8hbrrxrhy6c3jpda9hvgbsp6yclag49f12xja"; depends=[digest png rayimage Rcpp RcppThread spacefillr]; }; + rayvertex = derive2 { name="rayvertex"; version="0.10.4"; sha256="16rkin3dq648x1gwi9kdpaamb4zsvp326y84pnbwrivny2g9j7q3"; depends=[digest png rayimage Rcpp RcppThread spacefillr]; }; rb3 = derive2 { name="rb3"; version="0.0.10"; sha256="1gf4i5fbpx238af5f5bzcfmb763mlyk97aq8335slyc8828b9a9c"; depends=[ascii base64enc bizdays cli digest dplyr httr jsonlite proto purrr readr readxl rlang rvest stringr tidyr XML yaml]; }; - rbacon = derive2 { name="rbacon"; version="3.1.1"; sha256="03c1d6p43h585kklwsp8x4w4vj1lrdm65i69p5gqb6cv35kvphjp"; depends=[coda data_table Rcpp rintcal]; }; + rbacon = derive2 { name="rbacon"; version="3.2.0"; sha256="18d0mcfmslycbsi9sgqkxw1xwm9cgq4rxkwrvlbm67g0ryad86l3"; depends=[coda data_table Rcpp rintcal]; }; rbart = derive2 { name="rbart"; version="1.0"; sha256="1byfm1ycw9nfhdblqklyn8pxn6b9q5fa3inbgfpynqpsid97ig35"; depends=[Rcpp]; }; rbcb = derive2 { name="rbcb"; version="0.1.13"; sha256="1a2afcghpf7qy79azrisxi6rq4b2lw6sbl1g65sn256zk68w0gr3"; depends=[digest httr jsonlite purrr tibble xml2 xts]; }; rbcc = derive2 { name="rbcc"; version="0.1.0"; sha256="0mfwkbgcnahrk19n14icf26rxf93nqm1r0kr2gi02gmpqrycl0br"; depends=[ggplot2 PearsonDS pracma qcc reshape2]; }; rbch = derive2 { name="rbch"; version="0.1-1"; sha256="0n2s5qfgjvg7vv65myz6dcmmaf37z883z1sw4hryngz2z6w4zz5q"; depends=[gmp httr openssl rjson]; }; - rbedrock = derive2 { name="rbedrock"; version="0.3.1"; sha256="019w0rkq0ys7r1dqx9v6izypqrxk5mymfjpz6hny7bp653c3nhwx"; depends=[bit64 digest dplyr fs magrittr purrr R6 rappdirs readr rlang stringr tibble tidyr vctrs]; }; + rbedrock = derive2 { name="rbedrock"; version="0.3.2"; sha256="0jyc7cikr86927ax3qhniv8injqwndzhr4bhd4yphh2sliv6ci8c"; depends=[bit64 digest dplyr fs magrittr purrr R6 rappdirs readr rlang stringr tibble tidyr vctrs]; }; rbenchmark = derive2 { name="rbenchmark"; version="1.0.0"; sha256="010fn3qwnk2k411cbqyvra1d12c3bhhl3spzm8kxffmirj4p2al9"; depends=[]; }; - rbenvo = derive2 { name="rbenvo"; version="1.0.5"; sha256="0clg2cxyi60yz2mdp95v0hd5gqhk8h2xgmx68852jcpbjf76xasa"; depends=[dplyr forcats ggplot2 lme4 lubridate magrittr Matrix purrr rlang sf stringr tidyr]; }; rbgm = derive2 { name="rbgm"; version="0.1.0"; sha256="0jw7p6l0il0fz5rq7ra731xzj06aqqvm9s1r0hwa4rd74lkg198n"; depends=[dplyr geosphere raster reproj rlang sfheaders sp]; }; rbi = derive2 { name="rbi"; version="1.0.0"; sha256="19gmxwblj1lvdspxiwmyxcl6mp7b1xpabwgy69n9vndfzkwq2bmc"; depends=[data_table ncdf4 processx reshape2]; }; rbi_helpers = derive2 { name="rbi.helpers"; version="0.4.0"; sha256="1qj5b9wwh40ni549l9xiarp7w5x9q5n22k413azjhnssm7799hbv"; depends=[data_table lubridate Matrix rbi reshape2]; }; - rbibutils = derive2 { name="rbibutils"; version="2.2.15"; sha256="1kjk953xqakbxb2z8rcfcni8b9vi1m27n0ksdddil6x7q03flxb5"; depends=[]; }; + rbibutils = derive2 { name="rbibutils"; version="2.2.16"; sha256="1brab8vzzf44d9rpp9k3r2ajvrs09cbwf4ak014iffzn8yx0yz4w"; depends=[]; }; rbin = derive2 { name="rbin"; version="0.2.0"; sha256="18g6s4m0yc1bzrymk8km553kcwi4vj16b6mxw2lmv48z7243iq87"; depends=[data_table ggplot2]; }; rbioacc = derive2 { name="rbioacc"; version="1.2-0"; sha256="0a2kbkmj0bv1b4bgqrc4kcvffh7a5bhbqpa8xd9r2ws3kzhgr2lh"; depends=[BH GGally ggmcmc ggplot2 loo Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders stringr zoo]; }; rbioapi = derive2 { name="rbioapi"; version="0.8.0"; sha256="0dxd58y0a5pd5zw3agd405xb6325z629n7lg9ps7hqc66jy59pba"; depends=[httr jsonlite]; }; @@ -15968,9 +16202,8 @@ in with self; { rbiouml = derive2 { name="rbiouml"; version="1.11"; sha256="1g1q6xc8x8y71ji75c5fl35sxxss964xmhcqlriybb5zc38m1dh0"; depends=[RCurl RJSONIO]; }; rbit = derive2 { name="rbit"; version="1.0.0"; sha256="09ywr711gv0vgfims2vfcxk3rnd0iadzlksil0q9159yarapfc59"; depends=[R6]; }; rblt = derive2 { name="rblt"; version="0.2.4.6"; sha256="066clmmlmczafzfgh6hbiz9grlfr613bfbr0j79kfdh8b0ga1v1s"; depends=[data_table dygraphs hdf5r shiny xts]; }; - rbmi = derive2 { name="rbmi"; version="1.2.5"; sha256="17r54595yjqbm5800rmq467pp2b26h2az3hq409iq6ka6an9f1mg"; depends=[assertthat BH Matrix mmrm pkgload R6 Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; + rbmi = derive2 { name="rbmi"; version="1.2.6"; sha256="0yy5yz9ld74wvljvpfz4gh7xzq9b60nf9lc97s1zvmwjgrzp77v4"; depends=[assertthat BH Matrix mmrm pkgload R6 Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; rbmn = derive2 { name="rbmn"; version="0.9-6"; sha256="0z043fxvh8zzggi70dyqvybd55mcsnv15miiayhb8440vldiy8w6"; depends=[MASS]; }; - rbokeh = derive2 { name="rbokeh"; version="0.5.2"; sha256="1h2fpzqf17pw9d09r1g1iyxsj5qma4fsk8vnar7f1z4fjyypvi6q"; depends=[digest gistr hexbin htmlwidgets jsonlite lazyeval magrittr maps pryr scales]; }; rbooster = derive2 { name="rbooster"; version="1.1.0"; sha256="0v524hjp3im94hbf6kbmi4xhqnak135mmpmq1sni1c97dqal2hqy"; depends=[earth Hmisc rpart]; }; rbounds = derive2 { name="rbounds"; version="2.2"; sha256="0rp24s80fvf62il7prpyb90j8i8x1xy6k8jzn5prb88nnvspr2fi"; depends=[]; }; rbridge = derive2 { name="rbridge"; version="1.0.2"; sha256="0m4c61rdrhq1jw3rwq2ld29g5dchbk4sfpnq0wmwbvzhdjq76plc"; depends=[dplyr Matrix Rcpp RcppArmadillo]; }; @@ -15979,7 +16212,7 @@ in with self; { rbtt = derive2 { name="rbtt"; version="0.1.0"; sha256="1gbsb0vmqxcl28c5nn0rz95bxrvl7i0b17lq90cj5ahbk6x9jblz"; depends=[data_table]; }; rbw = derive2 { name="rbw"; version="0.3.2"; sha256="12kldcx858gigd9sfki73rgg61smk7qcb43lx7z2r5y9dr0mwaa7"; depends=[dplyr rlang]; }; rcDEA = derive2 { name="rcDEA"; version="1.0"; sha256="012l9l61p3mw38fk3y3rcfjjjj9ds5kb1v2cwfvad2il5w6s9smv"; depends=[Benchmarking np]; }; - rcaiman = derive2 { name="rcaiman"; version="1.1.2"; sha256="0qjbkfp571qv2i4z50vk48wrc9k0gayil88a3z85aa9k033y6kk8"; depends=[colorspace filenamer lidR magrittr pracma Rdpack spatial terra testthat]; }; + rcaiman = derive2 { name="rcaiman"; version="1.2.2"; sha256="1zhs56my1229826ilxfdm5vdgw2n8vql3flmj64604fsyjsnv833"; depends=[colorspace filenamer lidR magrittr pracma Rdpack spatial terra testthat]; }; rcarbon = derive2 { name="rcarbon"; version="1.5.1"; sha256="0wgf0jia5iwa7v1aln80521rj1q7rhx3l9rpf3df3za73kn4z7gm"; depends=[doSNOW foreach iterators knitr sf snow spatstat spatstat_explore spatstat_geom spatstat_linnet spatstat_model]; }; rcartocolor = derive2 { name="rcartocolor"; version="2.1.1"; sha256="0lqipmrcvgjlh7ya4r3vf7qiypc2pwgqcxzmg4xmb5h5p5l37cq0"; depends=[ggplot2 scales]; }; rcbalance = derive2 { name="rcbalance"; version="1.8.8"; sha256="1kxy3nv9f3qk5azp8d6khd7skk9m4704mdimgzabrndrlb5ihyw8"; depends=[MASS plyr rlemon]; }; @@ -15988,22 +16221,21 @@ in with self; { rcc = derive2 { name="rcc"; version="1.0.0"; sha256="0a77d54c9qahhsjzpa0436ddsj4j44013r7rbxm0fjz04c0d2921"; depends=[]; }; rcccd = derive2 { name="rcccd"; version="0.3.2"; sha256="0wyh4ijiy0mm7alfkz06hnkgya87npxgz33zpaarb3phkkzjhcs2"; depends=[proxy RANN Rcpp RcppArmadillo Rfast]; }; rccola = derive2 { name="rccola"; version="1.0.2"; sha256="0i846y9l3il2y38g32cifwysca06iakqd6vs15fcwqnzm8g0sg5j"; depends=[getPass keyring redcapAPI yaml]; }; - rcdd = derive2 { name="rcdd"; version="1.5-2"; sha256="15dk0805yq2fgla2nafxswwvq2lakvb6kpgwzrag5l0xbrwcvv6q"; depends=[]; }; + rcdd = derive2 { name="rcdd"; version="1.6"; sha256="0xfvfcjd9gpp6qaalkfkx2f11lyj4sm6n6b763lnk0rrmn6cv2lz"; depends=[]; }; rcdk = derive2 { name="rcdk"; version="3.8.1"; sha256="15dwjrnw0zdkck56gs2282gw5fvzqimhhjyrryh1rdnvvqsbj9i7"; depends=[fingerprint iterators itertools png rcdklibs rJava]; }; rcdklibs = derive2 { name="rcdklibs"; version="2.8"; sha256="0j8r0aqvdmajglyc3zld1d2g2cggg6i3qms1ghalxxdgph555jzw"; depends=[rJava]; }; rchallenge = derive2 { name="rchallenge"; version="1.3.4"; sha256="0i402p6ccjn10ix5nln30pab5nd78hg5q4ivvgc4i99nx7aq0xpx"; depends=[knitr rmarkdown]; }; rchemo = derive2 { name="rchemo"; version="0.1-1"; sha256="18jcx4f4vs6qjhv2ypy4wgqdcprjpbi738lyr28f0ih7185fipm0"; depends=[data_table e1071 FNN signal]; }; - rcheology = derive2 { name="rcheology"; version="4.3.1.0"; sha256="0hsv11ynqfphzyvkqxs207l6k0x4f61z1cqg6xf1iw22p4b24v9x"; depends=[]; }; - rchess = derive2 { name="rchess"; version="0.1"; sha256="0qnvvvwcl02rmqra9m7qnhy40cbavswbq6i0jm47x6njmr1gpfhy"; depends=[assertthat dplyr ggplot2 htmlwidgets plyr R6 V8]; }; + rcheology = derive2 { name="rcheology"; version="4.3.2.0"; sha256="1h51mwigl6jvz4mgn2vf5c9gb2cr94l1li2arpws3020q84yrvhm"; depends=[]; }; rciplot = derive2 { name="rciplot"; version="0.1.1"; sha256="0pz5lvrm9ifhypq490cnqawr87wlh4m0812612s079b9ljsw6dr0"; depends=[dplyr ggplot2 tibble]; }; rcites = derive2 { name="rcites"; version="1.3.0"; sha256="192cdkd4pybpsdab8dzchx96385bdjsm30p8qrlw9wzmij03rx2x"; depends=[cli curl httr jsonlite]; }; - rclipboard = derive2 { name="rclipboard"; version="0.2.0"; sha256="1sm3x134brhi0qxa1bp20z4k0dlpa044qg8zsbgjr00w8yc3rr47"; depends=[bslib shiny]; }; + rclipboard = derive2 { name="rclipboard"; version="0.2.1"; sha256="18dj35vi5xdg0yhdm58vdgklwyl2zsjkvz01jcvwy7nvhkqm6c82"; depends=[bslib shiny]; }; rcmdcheck = derive2 { name="rcmdcheck"; version="1.4.0"; sha256="1l696byn3kjq2xvz4wxybzaj6ink85h4lz3a35v2132ba5yyzm5v"; depends=[callr cli curl desc digest pkgbuild prettyunits R6 rprojroot sessioninfo withr xopen]; }; rco = derive2 { name="rco"; version="1.0.2"; sha256="1ch7ak802ri4jr10jqvhvdi6q9fhyhql15ja395xfv6j81d5cmia"; depends=[]; }; rcoder = derive2 { name="rcoder"; version="0.3.0"; sha256="09l1gvcf453j058rls4y2r342y3p4ywvf1g0qzq4kwavxxcl5rn2"; depends=[dplyr glue rlang]; }; rcolors = derive2 { name="rcolors"; version="0.1.0"; sha256="19lkwd1wdwq9if957qjgrz9mq6s8x49dig8snivhw9ksffcfy4xp"; depends=[magrittr]; }; rcompanion = derive2 { name="rcompanion"; version="2.4.34"; sha256="0idv0gy1b2qfa0ayzf53mnv0mmk2nq7ykc5n8g7f2zrmfpwb9hcb"; depends=[boot coin DescTools lmtest multcompView nortest plyr]; }; - rcompendium = derive2 { name="rcompendium"; version="1.1"; sha256="1fjdm26x01qla660mprs2pi8slbhvmw9m2smhprg66lxvs44g71l"; depends=[clisymbols crayon devtools gert gh gtools renv rmarkdown rstudioapi stringr usethis xfun]; }; + rcompendium = derive2 { name="rcompendium"; version="1.3"; sha256="10df6lr776qr2lhc4phpkl53par60f35c694knzfx4s81mprd842"; depends=[cffr clisymbols crayon devtools gert gh gtools renv rmarkdown rstudioapi stringr usethis xfun]; }; rconfig = derive2 { name="rconfig"; version="0.3.0"; sha256="1qxm9l0yd4xir6wr31r1v87g7flbpgggy7lh9lbvg307k8li1j2h"; depends=[jsonlite yaml]; }; rcontroll = derive2 { name="rcontroll"; version="0.1.1"; sha256="14xh5hhb96qk0f3kvvvjbkyswcq17g6y70v5prazldq7i4bzpv8q"; depends=[doParallel doSNOW dplyr foreach gganimate ggplot2 iterators lidR lubridate magrittr Rcpp RcppGSL readr reshape2 sys terra tibble tidyr viridis vroom]; }; rcorpora = derive2 { name="rcorpora"; version="2.0.0"; sha256="1b8xa81mn3afadz77576vda9b0d99f1k096drxrpqd989g993aqy"; depends=[jsonlite]; }; @@ -16025,9 +16257,9 @@ in with self; { rddtools = derive2 { name="rddtools"; version="1.6.0"; sha256="12lxdpazfhwn5kkzs91qhs0xcky30dj01yp0v5708ahr1ywqdxmd"; depends=[AER Formula ggplot2 KernSmooth lmtest locpol np rdd rdrobust rmarkdown sandwich]; }; rde = derive2 { name="rde"; version="0.1.0"; sha256="1zw9gdh90hl0wc5c0xwl5x7566r611wk73sbqdmpzpswjyyl9aqm"; depends=[clipr]; }; rdecision = derive2 { name="rdecision"; version="1.1.3"; sha256="134d3990zzym6jng33nfi6kp9b7pwyppn76vn3ms4lhpjw7dbcl3"; depends=[R6 rlang]; }; - rdflib = derive2 { name="rdflib"; version="0.2.7"; sha256="10nnb3hqf1dbqxr9zn4d4jmwz4zkklw3vxfhc1vnn7ffhlm84d3f"; depends=[dplyr readr redland stringi tidyr]; }; + rdflib = derive2 { name="rdflib"; version="0.2.8"; sha256="0massic915hyw2752jkaa3rx9nf2v7a87gp3c5qpyn4fnqjai4dn"; depends=[dplyr readr redland stringi tidyr]; }; rdfp = derive2 { name="rdfp"; version="0.1.4"; sha256="1490227hhfjjscfmd8p897v1ijs61pk5sc0a2vr9yjnfmsnxpqrl"; depends=[curl data_table dplyr httr lubridate plyr purrr readr XML xml2]; }; - rdhs = derive2 { name="rdhs"; version="0.8.0"; sha256="0zp5h7m7rd4d622rv4xqk4q4ycgzwlw7cwjsl4rvimqfvr69m8zv"; depends=[brio cli digest foreign getPass haven httr iotools jsonlite magrittr qdapRegex R6 rappdirs rlang sf storr xml2]; }; + rdhs = derive2 { name="rdhs"; version="0.8.1"; sha256="0i25lbfbi3ikipk7k53bi1b57v2348ab08sh7rh2pqdlxpfkp7b7"; depends=[brio cli digest foreign getPass haven httr iotools jsonlite magrittr qdapRegex R6 rappdirs rlang sf storr xml2]; }; rdi = derive2 { name="rdi"; version="1.0.0"; sha256="1c49mkxfyxhqz8fc155kgy1k5by0y2c1ahy8k6pn9k8l1j4m4m2q"; depends=[beanplot gplots pdist stringr]; }; rdian = derive2 { name="rdian"; version="0.1.1"; sha256="0i4ljcqhmrwrqbhi321iffypxj4kndx47ssljnixr3fx2lmqh0q1"; depends=[curl httr]; }; rdist = derive2 { name="rdist"; version="0.0.5"; sha256="1jb6dgp1f3307h96v20pjxpkxfz08ij98w0yj5cdx1g2kwfl0h0w"; depends=[Rcpp RcppArmadillo]; }; @@ -16040,48 +16272,47 @@ in with self; { rdoxygen = derive2 { name="rdoxygen"; version="1.0.0"; sha256="16907969w66xvy62k45rw10qfv4x8z6jkkc6i97vppkgnlvf4d4b"; depends=[devtools]; }; rdpower = derive2 { name="rdpower"; version="2.2"; sha256="0v598jqka5skffbzb4knfmm5hfbg6gmwjgbclv774wrxxn62sj4z"; depends=[rdrobust]; }; rdracor = derive2 { name="rdracor"; version="0.7.6"; sha256="1zjd5w2kmpqbnm4j4w72r8bdy3hnvbvvckv3azdjsarbhnpqyfvw"; depends=[data_table httr igraph jsonlite purrr Rdpack stringr tibble tidyr xml2]; }; - rdrobust = derive2 { name="rdrobust"; version="2.1.1"; sha256="18345w89w3phkfp4s59k10iha2ywgnrgdm61f8a9ixvhd3vv2qr0"; depends=[ggplot2 MASS]; }; - rdrop2 = derive2 { name="rdrop2"; version="0.8.2.1"; sha256="02rhcq1vn349ddjkqamxb0wjb3z3m4wzkvin1mprcz4fzrjxgbdr"; depends=[assertive digest dplyr httr jsonlite magrittr purrr]; }; + rdrobust = derive2 { name="rdrobust"; version="2.2"; sha256="1p9k8gd39090r5ml1sk30k3hvfns2v6laysbaswsn9i2ka70zj42"; depends=[ggplot2 MASS]; }; rdryad = derive2 { name="rdryad"; version="1.0.0"; sha256="00f1qwsbwg5jggm5b83nhk1lxyw272rv2kg77bcwqvlf3074c3mz"; depends=[crul curl hoardr jsonlite mime tibble zip]; }; rdss = derive2 { name="rdss"; version="1.0.4"; sha256="05sm8ha7rb0wxl0wmvjsckr0gyar8jyah2vpy8s9rqrjkayzcdd5"; depends=[broom dataverse dplyr estimatr generics ggplot2 prediction purrr randomizr readr rlang tibble tidyr]; }; rdtLite = derive2 { name="rdtLite"; version="1.4"; sha256="0m2fxwz0h4rriw62g2hp20iw6ddbq5l8n80z9xgxk49n6pfm1ywj"; depends=[curl digest gtools jsonlite knitr provViz rlang rmarkdown sessioninfo stringi XML]; }; rdwd = derive2 { name="rdwd"; version="1.8.0"; sha256="0lb9r2wcdyix3im460wvv2q7yni3yixl7z8py4nbzp7ah0dc7g1z"; depends=[berryFunctions pbapply]; }; rdwplus = derive2 { name="rdwplus"; version="1.0.0"; sha256="0bcdpza4rbvfzn69zws5s2l32rs7m39a5h3zxyz4gszff3yn37fx"; depends=[rgrass sf stars stringr]; }; - re2 = derive2 { name="re2"; version="0.1.2"; sha256="13cxq6zw66b0wqwv19kkgn8z9kx1p9x1z1fv9cgn1iq7v1br8gm4"; depends=[Rcpp]; }; + re2 = derive2 { name="re2"; version="0.1.3"; sha256="116fnvvg2mm9a7bpi6flh132yffhqbgz2mp0kpq2g84ic51qnwxf"; depends=[Rcpp]; }; reReg = derive2 { name="reReg"; version="1.4.6"; sha256="1p1rbj88bc5qz909w2q6mnzkscz2djdm8w3lcfj1pzka6699jz8z"; depends=[BB dfoptim directlabels ggplot2 MASS nleqslv optimx Rcpp RcppArmadillo reda rootSolve scam SQUAREM survival]; }; reactCheckbox = derive2 { name="reactCheckbox"; version="1.0.0"; sha256="1ph4kzq6i91d0aaf6jfd0klnlwipadnii648sky85dybpa78wy6a"; depends=[htmltools reactR]; }; reactR = derive2 { name="reactR"; version="0.5.0"; sha256="14pi2wc25qa9q0hp8jby07798l53phyj1zifj46fg2pjq8vkz7p7"; depends=[htmltools]; }; reactable = derive2 { name="reactable"; version="0.4.4"; sha256="1wkamzyyl3k3772n5g4rjklkkhdb07jiax064r9alnnq5nzfdaml"; depends=[digest htmltools htmlwidgets jsonlite reactR]; }; + reactable_extras = derive2 { name="reactable.extras"; version="0.2.0"; sha256="16cfldbfcz34jp0kfxiaz8l49ri2s9fr1r9kissqzs0xzjrp78in"; depends=[checkmate dplyr htmltools purrr reactable rjson rlang shiny]; }; reactablefmtr = derive2 { name="reactablefmtr"; version="2.0.0"; sha256="1r864j8ma1sas2fglw5hdkhf3lxrkri7mf2k5j8cpq7398kgzp94"; depends=[dplyr htmltools htmlwidgets magrittr purrr reactable sass shiny stringr tippy webshot]; }; reactlog = derive2 { name="reactlog"; version="1.1.1"; sha256="1njihrnq1x162nc2wk16kj1l0vpvk8xcdgjvj36arw4z8nv8wpah"; depends=[jsonlite]; }; - read_dbc = derive2 { name="read.dbc"; version="1.0.6"; sha256="0v10fnia615hj6kw3504v455f6k4syy2pilbmvcspk5r6lfs1pcg"; depends=[foreign]; }; read_gb = derive2 { name="read.gb"; version="2.2"; sha256="1ym285y6ii71lz3c68imvcdpw24jdxbdxzq9ia533dy5himclrg7"; depends=[rentrez]; }; read_gt3x = derive2 { name="read.gt3x"; version="1.2.0"; sha256="0xnl9vg3jvrz4zk721d1mhqpaflrgbs2vbbvfhhr3j394zlcf55b"; depends=[R_utils Rcpp]; }; readABF = derive2 { name="readABF"; version="1.0.2"; sha256="1lyjl3j62nrsml9vmgwbach9qm8mh2d2pxjj8sfbkkw79krvdnsd"; depends=[]; }; readBrukerFlexData = derive2 { name="readBrukerFlexData"; version="1.9.1"; sha256="0bhqrsxaq9s39m763a79pvi1qq2c0qa1yp03p9caqlmcm58dnlk7"; depends=[]; }; readHAC = derive2 { name="readHAC"; version="1.0"; sha256="0z80ai6xfswwgdfh83l9sq279c97n0wz25bk2l7xfb6w0sndzq53"; depends=[]; }; - readJDX = derive2 { name="readJDX"; version="0.6.1"; sha256="19aw7jafgg6d6q5xmsphpkyakad6m1x1062h3nxkmfma9xcy4ns4"; depends=[stringr]; }; + readJDX = derive2 { name="readJDX"; version="0.6.4"; sha256="16ixrwnmpmq3x358gdyrf3fm1vr8dxjbz3cql3zldz1sfl3f4z76"; depends=[stringr]; }; readMLData = derive2 { name="readMLData"; version="0.9-7"; sha256="0l752j1jq37j9pdcsbmcb23b5l8fkfsbisfr3yjy3q4rxsphc7k6"; depends=[XML]; }; readMzXmlData = derive2 { name="readMzXmlData"; version="2.8.3"; sha256="1mh6rgy8s0rkvycv99p3zgw831pgzi5cacsj4awb7h4dl11sf8sf"; depends=[base64enc digest XML]; }; readNSx = derive2 { name="readNSx"; version="0.0.2"; sha256="1zi9s9v9q7scfgx4c0kq9f4shvfcxvl4499d853x9hyn3aby1x04"; depends=[cpp11 data_table fastmap hdf5r jsonlite R6]; }; readODS = derive2 { name="readODS"; version="2.1.0"; sha256="1znp039wfbq8bbjj9pdkl8hwnhm9x5n8c7y5b53xmpnaqxx5agiz"; depends=[cellranger cpp11 readr stringi tibble vctrs zip]; }; readOffice = derive2 { name="readOffice"; version="0.2.2"; sha256="0dg7fwxdl41nrjqnxvh9rpz0la99iid0wy51gncjwrh3s85fj2ks"; depends=[magrittr purrr rvest xml2]; }; - readSX = derive2 { name="readSX"; version="0.8.4"; sha256="0g8nwm1vk8spiffnb93a63vq14q6xm2b9wy708qfkriijrn8n52i"; depends=[cli readxl rlang]; }; readabs = derive2 { name="readabs"; version="0.4.14"; sha256="1m6n8w2hi2r0rrnmy9cnb5a0c37wlq23j6w49lx1zspsfqk6iqiv"; depends=[dplyr fst glue httr hutils labelled purrr readxl rlang rvest stringi tidyr xml2]; }; readbitmap = derive2 { name="readbitmap"; version="0.1.5"; sha256="14825906l326w59g6apy00j55jg3h5kx2r6s031f4gdkbrc7szbk"; depends=[bmp jpeg png tiff]; }; - readbulk = derive2 { name="readbulk"; version="1.1.3"; sha256="0rqz0r5ygwgfqkzv2130sciz3j2p888c2005wsk1m5403syi78an"; depends=[jsonlite plyr]; }; + readbulk = derive2 { name="readbulk"; version="1.1.4"; sha256="1i9wax1dkl6xn37zmmlg2g4cxfzj88fyynrn3gv60sbw6s1a4r30"; depends=[plyr]; }; reader = derive2 { name="reader"; version="1.0.6"; sha256="1x489q3ljap4zpny68mx83mgxaqiwlkglcy57whwhnh33dd7qp4h"; depends=[NCmisc]; }; readit = derive2 { name="readit"; version="1.0.0"; sha256="1sq2spjgdc9rq8cr5i9qjmqd4vcf7cknpx5dndwjdqrv112y8bk9"; depends=[crayon haven jsonlite readr readxl]; }; readmet = derive2 { name="readmet"; version="1.6.9"; sha256="17l1ran8ckaqqf9dm7bgny5qjaq5yllmy7pjakxvjzgdxhqkpadm"; depends=[]; }; + readmission = derive2 { name="readmission"; version="0.1.0"; sha256="14jdy4w49g7v843hn3hiqgr33nns6hq62a62b0cyainbkvrgrgwk"; depends=[]; }; readmnist = derive2 { name="readmnist"; version="1.0.6"; sha256="0f2kp5r04k47gpvbj8x13c47zsis3bw3y8f5f37sh6jggblqr004"; depends=[]; }; readmoRe = derive2 { name="readmoRe"; version="0.2-12"; sha256="18zxhnh8nzh3l5j94mrqf9l94bxvc82nzhl8sx5k9h08gj4f1zfw"; depends=[plyr R_utils readxl xml2]; }; readobj = derive2 { name="readobj"; version="0.4.1"; sha256="0ga0kk6n98zy8w9wc2fahn15bgsv73n4ncqgqb5ldyr4vjqxr2sr"; depends=[Rcpp]; }; readr = derive2 { name="readr"; version="2.1.4"; sha256="03gbzf29kdvf4rdqgdq2jm7c9ifjla3qzpiyqzw1x9jgijj4y54q"; depends=[cli clipr cpp11 crayon hms lifecycle R6 rlang tibble tzdb vroom]; }; - readrba = derive2 { name="readrba"; version="0.1.5"; sha256="0nb185mmbcc796l9xy5v9p1y9hssd00wypxsm3s2212mczcbpail"; depends=[dplyr httr lubridate purrr readxl rlang rvest stringr tidyr xml2]; }; + readrba = derive2 { name="readrba"; version="0.1.7"; sha256="0m2bxnn3ac8qb7860268d2krxvdj4aw9v3ckd3ccqza0cspihhf1"; depends=[dplyr httr lubridate purrr readxl rlang rvest stringr tidyr xml2]; }; readroper = derive2 { name="readroper"; version="0.9.3"; sha256="00l731hryx0igj0x7knljs9xq4gaczmsgw2hh05ngrl9y5s528dc"; depends=[readr]; }; readsdmx = derive2 { name="readsdmx"; version="0.3.1"; sha256="0rqi9kfhis2il0jw08rsbpk9ca0hm3i7vh9l3d0rvx5acck7z4z2"; depends=[Rcpp]; }; readsdr = derive2 { name="readsdr"; version="0.2.0"; sha256="0s16m1cam69c83k6cdpysdfyqzh0ihyjdwdzv3hqxa9054iv5ifx"; depends=[deSolve dplyr magrittr purrr rlang stringi stringr xml2]; }; - readsparse = derive2 { name="readsparse"; version="0.1.5-3"; sha256="1xqagkpapi1pqv30baa2dcglrywr69vajfp4y29smbmk26b1sas6"; depends=[Matrix Rcpp]; }; + readsparse = derive2 { name="readsparse"; version="0.1.5-6"; sha256="0njvk51057bi6chd6vqcfwif5b18943k67biyk4gk80rj01ggscc"; depends=[Matrix Rcpp]; }; readstata13 = derive2 { name="readstata13"; version="0.10.1"; sha256="18yr7nsz80dsxxsdgyi68k7506digjawk6khnzpvk5y80yz7hyqi"; depends=[Rcpp]; }; readtext = derive2 { name="readtext"; version="0.90"; sha256="01hscqmjb3fz4iqqgi0l2s1z48a53a25jnsxb0cdd631c97alqrh"; depends=[antiword data_table digest httr jsonlite pdftools pillar readODS readxl streamR stringi striprtf xml2]; }; readtextgrid = derive2 { name="readtextgrid"; version="0.1.1"; sha256="03qrbmlpbjwx4ia0ydv6m9lwzalsas9pdhds82mg5f8ir0cd0qi6"; depends=[magrittr plyr purrr readr stringr tibble]; }; @@ -16103,10 +16334,10 @@ in with self; { rebus_numbers = derive2 { name="rebus.numbers"; version="0.0-1"; sha256="0drgszz0824j49c6jk9ry0cfjky7g843ldlxrx3g2vjp0v7hznj3"; depends=[rebus_base]; }; rebus_unicode = derive2 { name="rebus.unicode"; version="0.0-2"; sha256="185313wh4zpp6addfdr78pjhxzazlfwgsddwk02zrzblf4iwzjdm"; depends=[rebus_base]; }; recapr = derive2 { name="recapr"; version="0.4.4"; sha256="1grp8aczn3qjm8ihn2466v5yay60vwyf1x7jsmihgxlvgwki6dh7"; depends=[MASS]; }; - receptiviti = derive2 { name="receptiviti"; version="0.1.5"; sha256="0j4ypma8kp37q3kjnh9pxlw24mb8vmj0pis56a9gk6slzqivbbfi"; depends=[arrow curl digest dplyr future_apply jsonlite progressr]; }; + receptiviti = derive2 { name="receptiviti"; version="0.1.6"; sha256="03n9pdr3lsm0yypirlwwf9p9gylm3127jqqbyqfp3mmjjbmfa3dw"; depends=[arrow curl digest dplyr future_apply jsonlite progressr stringi]; }; recexcavAAR = derive2 { name="recexcavAAR"; version="0.3.0"; sha256="0b91jbgqzkgzvk658ckk639yyz1daa0xql3qgl0kzgqg68d53x20"; depends=[kriging Rcpp]; }; rechonest = derive2 { name="rechonest"; version="1.2"; sha256="0vpff8q5p6in7vjyl62bx3wmksravcg4mpx20qlgy5ia47vyhqp2"; depends=[httr jsonlite RCurl]; }; - recipes = derive2 { name="recipes"; version="1.0.8"; sha256="03d0g36svzc64fa2w2kcylsw654px0xjqqrb0znra4bfncj0ilnk"; depends=[cli clock dplyr ellipsis generics glue gower hardhat ipred lifecycle lubridate magrittr Matrix purrr rlang tibble tidyr tidyselect timeDate vctrs withr]; }; + recipes = derive2 { name="recipes"; version="1.0.9"; sha256="146p9ij2i4rmzaa5v76lm7z8iaw5wqb47i9cqf4a0q7xsgqvf6hi"; depends=[cli clock dplyr ellipsis generics glue gower hardhat ipred lifecycle lubridate magrittr Matrix purrr rlang tibble tidyr tidyselect timeDate vctrs withr]; }; reclin2 = derive2 { name="reclin2"; version="0.3.4"; sha256="1amwglzn2hpc8xzkpsavc98jd7yq6j02b2d5mynidpy3h3rikgzy"; depends=[data_table lpSolve Rcpp stringdist]; }; recluster = derive2 { name="recluster"; version="2.9"; sha256="1nz5w4v5hhb3qjwxixc526gqsmr1imw582l9gj2acwar4z9mixjp"; depends=[ape cluster phangorn phytools picante plotrix vegan]; }; recmap = derive2 { name="recmap"; version="1.0.17"; sha256="1q59fw72g6nkc9gzx06mnhwavplxybc0srjb10h5h8l1wwf1s67i"; depends=[GA Rcpp sp]; }; @@ -16124,7 +16355,7 @@ in with self; { recorder = derive2 { name="recorder"; version="0.8.2"; sha256="1j3fqqp5vi8z3hxqgb887v9r8x0cl5jikiyx3c7arwna7k89215a"; depends=[crayon data_table]; }; recosystem = derive2 { name="recosystem"; version="0.5.1"; sha256="01d8r1pwvd606cbs9bq2rq3ahq7jnfgak9p58ch4fs4ki5nxf1sj"; depends=[float Rcpp RcppProgress]; }; recurrentpseudo = derive2 { name="recurrentpseudo"; version="1.0.0"; sha256="1vnljzn933k4wcc751r6s67dfjz1mrwvcb37yziv6qn8zimn8xrz"; depends=[dplyr geepack magrittr prodlim stringr survival]; }; - recurse = derive2 { name="recurse"; version="1.1.2"; sha256="0bdm2nd8cq64dwz9b2hnbjv6c3fwpy7gnmbfi6p49nf285p8y632"; depends=[Rcpp]; }; + recurse = derive2 { name="recurse"; version="1.2.0"; sha256="01l30ypwaj7i2cwb0dy2sapp7mvvkm1k99sib5bdxpyww4zkpiqm"; depends=[Rcpp]; }; red = derive2 { name="red"; version="1.6.1"; sha256="1xij1wshb5bv5zd9svhgprdjpn3snxb7wjqjdrqkbgs8y49cixx6"; depends=[BAT dismo gdistance geosphere jsonlite predicts sp terra]; }; redR = derive2 { name="redR"; version="1.0.1"; sha256="0bd1jzjip6p449m9ysi4kybxqljh2wj8z9mrgyk1cy08bjivd1cd"; depends=[imager]; }; reda = derive2 { name="reda"; version="0.5.4"; sha256="1lrfbcvxgbbpi7l3vls3rdj8y3w30gg5f1fjcfscmykvp0i01j3d"; depends=[ggplot2 Rcpp RcppArmadillo splines2]; }; @@ -16133,29 +16364,30 @@ in with self; { reddPrec = derive2 { name="reddPrec"; version="0.4.0"; sha256="0zmkaiivvjq8mcaz310zgjjc7y0wgsqv29bf8nhli5qawaczvb9a"; depends=[fields snowfall]; }; redditadsR = derive2 { name="redditadsR"; version="0.1.0"; sha256="00kn34d8277f8m4xigr28lpq4s55lvli4xw70g4cbsir7m6ibklv"; depends=[jsonlite]; }; redist = derive2 { name="redist"; version="4.1.1"; sha256="0gvcsbb169apkyg0h35y67js48q995n5dzr4krhv0ihp2qba91ky"; depends=[cli doParallel doRNG dplyr foreach ggplot2 patchwork Rcpp RcppArmadillo RcppThread redistmetrics rlang servr sf stringr sys tidyselect vctrs]; }; - redistmetrics = derive2 { name="redistmetrics"; version="1.0.2"; sha256="1jq4qz43j7qjzx2pac3i1p2h331pgj8z9zfg4s1dhn56rwscn8f5"; depends=[cli doParallel dplyr foreach geos magrittr Rcpp RcppArmadillo rlang sf wk]; }; + redistmetrics = derive2 { name="redistmetrics"; version="1.0.7"; sha256="0r9fa0p65bpklgcb5nbbsm2s3vhrcbbp4glciglmw185vfjqg7s2"; depends=[cli doParallel dplyr foreach geos magrittr Rcpp RcppArmadillo RcppThread rlang sf vctrs wk]; }; redland = derive2 { name="redland"; version="1.0.17-17"; sha256="135cfxn81dsafrnlcf7plp0d5hhdrw6w7kyjbrp65svky1fb0zsy"; depends=[roxygen2]; }; redlistr = derive2 { name="redlistr"; version="1.0.4"; sha256="1m5dphcqcqy52l4r0pqiq80vl8nkh6vgv46qnjc02qjl7i1aipn5"; depends=[plyr raster sf sp terra]; }; - redoc = derive2 { name="redoc"; version="2.0.0.49"; sha256="06nfqw6xs0ij21mjbqk9sdvhhh0pqf6fwankvagsbyrv742g7qkx"; depends=[jsonlite]; }; - redux = derive2 { name="redux"; version="1.1.3"; sha256="1bbn2aznhfh78gbqq0g2n5lbg1q9aa7v8py3xv9gk97rg27jz49x"; depends=[R6 storr]; }; + redoc = derive2 { name="redoc"; version="2.0.0.75"; sha256="1k54hsh7xrlfs0a06yi73fml86ivcfcdxn5k8gx86mnq8mqmfsqh"; depends=[jsonlite]; }; + redux = derive2 { name="redux"; version="1.1.4"; sha256="1cbgc39avvjx1lqfrrwyq6fjm751i10gxhsfx67njg8ghj4pq790"; depends=[R6 storr]; }; ref_ICAR = derive2 { name="ref.ICAR"; version="2.0.1"; sha256="1mix12qxap6rqs6dg4nlbm9vlkzxgr1ivkjjkzap3k0km0agldx9"; depends=[classInt coda dplyr ggplot2 gtools MCMCglmm mvtnorm pracma Rdpack sf sp spdep]; }; refdb = derive2 { name="refdb"; version="0.1.1"; sha256="1g30n7jvn532nhbn4mrfkfym40vw1ha0q8yi3d3d3v86gyr5ga4n"; depends=[ape bioseq bold dplyr ggplot2 ggraph igraph leaflet readr rentrez rlang rmarkdown stringr taxize tibble tidyr xml2 yaml]; }; refer = derive2 { name="refer"; version="0.1.0"; sha256="1y0n4xzhn96d25mwjr0735w990rz2kbxhcpsc5k5vwbwq64q6wsd"; depends=[eList matchr]; }; referenceIntervals = derive2 { name="referenceIntervals"; version="1.3.0"; sha256="0q6rpz8llfsk86y8i1sdlqi97gcfx9k7q510pnz9nr7ag0w6w5mc"; depends=[boot extremevalues MASS outliers]; }; - refineR = derive2 { name="refineR"; version="1.6.0"; sha256="0fcpbhwfk5qp7jyqifdrmbqsf7yrapix2nqg8pb0biiwl1bi7v59"; depends=[ash future future_apply]; }; - refinr = derive2 { name="refinr"; version="0.3.2"; sha256="05jz3hgwghkbdi7r4977scifzcy5vrqmasjayq2mavada6dzj45l"; depends=[Rcpp stringdist stringi]; }; + refineR = derive2 { name="refineR"; version="1.6.1"; sha256="1bwafqcvsvmb6svdcr4ri31wvyzws33xfxrf42g4dzx03q0wwkin"; depends=[ash future future_apply]; }; + refinr = derive2 { name="refinr"; version="0.3.3"; sha256="05shfsif1s2pyyxxrrjg8qlr1bdp3yxviw2jjll3p5r65nn3gnh1"; depends=[Rcpp stringdist stringi]; }; refitME = derive2 { name="refitME"; version="1.2.2"; sha256="125hxp24vlwg3g0v1rlhi3zbvnnzyj95a6d9f52f98hf6bp05yhb"; depends=[caret dplyr expm MASS mgcv mvtnorm sandwich scales SemiPar VGAM VGAMdata]; }; refreg = derive2 { name="refreg"; version="0.1.1"; sha256="0dqlqh3ndpqjab2cz3aikb9srhmyj3j133lwcnajgycwr5334mri"; depends=[doParallel foreach ggplot2 gridExtra KernSmooth ks matrixcalc mbend mgcv misc3d pracma RColorBrewer rgl sp stringr]; }; refreshr = derive2 { name="refreshr"; version="0.1.0"; sha256="0p240a7f2yajrd5qqjv0la49vm2cs6i32zyxxjcs6rd2a1z9xwfs"; depends=[crayon dplyr lubridate stringr]; }; refset = derive2 { name="refset"; version="0.1.1"; sha256="1xbwvm9066g3f7pd34z5jh04vph4ddy2lkcgmf4kiwa1k5czpwg1"; depends=[]; }; refuge = derive2 { name="refuge"; version="0.3.3"; sha256="0cq62rgawlam4j4h4sz4zvkgi0x21k4syy4vh7i40bxrq0z9ysyz"; depends=[dplyr httr jsonlite tibble]; }; - refugees = derive2 { name="refugees"; version="2022.12.1"; sha256="1fkdrm2ryjsdwsn0x0j3kly2yn5v3gq4g3hn4wdvps1kwrl31vng"; depends=[tibble]; }; - refund = derive2 { name="refund"; version="0.1-32"; sha256="0c1y1l1jf2swjbjm02ivvxm1y8rklfbwbaacqcbs5bykmmajpjka"; depends=[boot fda gamm4 ggplot2 grpreg lattice lme4 magic MASS Matrix mgcv nlme pbs RLRsim]; }; + refugees = derive2 { name="refugees"; version="2023.6.0"; sha256="1sy93zg4vjv02ga96vzhdjvgnwmv3gmd3m7w2fplah7d49i3z85v"; depends=[tibble]; }; + refund = derive2 { name="refund"; version="0.1-34"; sha256="1210zxd0wsrhlhwv2jypgnskm2y01x021yrjknvmsqc26p6kqrfw"; depends=[boot fda gamm4 ggplot2 grpreg lattice lme4 magic MASS Matrix mgcv nlme pbs RLRsim]; }; refund_shiny = derive2 { name="refund.shiny"; version="1.0"; sha256="1qzz9q6bxl9hdr7mqhmva96x12g62m9h9mb6yqhq6003w7cz186g"; depends=[dplyr ggplot2 gridExtra lme4 plotly refund reshape2 shiny tidyr]; }; regDIF = derive2 { name="regDIF"; version="1.1.0"; sha256="125gw2dk1a43sij0gg98zwp15kc1a3411svf822q5k3d05r1a2wf"; depends=[foreach statmod]; }; regRSM = derive2 { name="regRSM"; version="0.5"; sha256="0nbp3yjk9r7qvwm7wla39155rmqnvpdb720iq3b0hcy1bbsxbk9s"; depends=[doParallel foreach Rmpi]; }; regcensus = derive2 { name="regcensus"; version="1.0.1"; sha256="0sab5pwbnc06vds23nzcargk8igfngsyqhvnh0q40g95b55fm0c8"; depends=[dplyr httr jsonlite stringr tidyverse]; }; regclass = derive2 { name="regclass"; version="1.6"; sha256="0m974k3yhf0dgv5f1qjs8c53mam0cll3cjn35ywfrmlfla0wlhf5"; depends=[bestglm leaps randomForest rpart rpart_plot VGAM]; }; + regda = derive2 { name="regda"; version="1.0"; sha256="0zdipzkf8yil1cf142g66cls9d2yabzag9k4nm9nab0nyfidkdcw"; depends=[doParallel foreach Rfast Rfast2]; }; regexPipes = derive2 { name="regexPipes"; version="0.0.1"; sha256="1hk0rhvmgzcyf5cyl8hjznl3ll25kpasqikfr6nxd6ian2slvmmb"; depends=[]; }; regexSelect = derive2 { name="regexSelect"; version="1.0.0"; sha256="0xnb9qa8l63ang4r40ky4qhlrs5mbzvmj98dgij26j3mq1ys1pa7"; depends=[shiny shinyjs]; }; regfilter = derive2 { name="regfilter"; version="1.1.1"; sha256="0s5gijp6pgqh9r57mz0kykkbrdvkc3wxbpz9wh15539rgkplynb6"; depends=[arules e1071 entropy FNN gbm ggplot2 infotheo modelr nnet randomForest rpart sf UBL]; }; @@ -16168,6 +16400,7 @@ in with self; { reglogit = derive2 { name="reglogit"; version="1.2-7"; sha256="0mknx71h24kbh4agarkhrfp2wz1kjvd34kv0c6qy0f1jwvr3kzr6"; depends=[boot Matrix mvtnorm]; }; regmed = derive2 { name="regmed"; version="2.1.0"; sha256="1m74865y2pahk50a149nv8aqkiilg23hbyijwmdcpqgi94ys40h3"; depends=[glasso gtools igraph knitr lavaan Rcpp RcppArmadillo]; }; regmedint = derive2 { name="regmedint"; version="1.0.0"; sha256="1rysxdci13r08y79fyd5h5idl2ip4i7b8v4x6n2rlc0vwi5wc61a"; depends=[assertthat Deriv MASS Matrix sandwich survival]; }; + regmhmm = derive2 { name="regmhmm"; version="1.0.0"; sha256="19w4r94n67wab3jswh0pdyj7237aijfxhz18s6cr9h4m9bldkvji"; depends=[glmnet glmnetUtils MASS Rcpp RcppArmadillo]; }; regnet = derive2 { name="regnet"; version="1.0.0"; sha256="0qb24idmdgk54rwziq6hqip584i4hvai6pj26zva2383gargxa3d"; depends=[glmnet igraph Rcpp RcppArmadillo]; }; rego = derive2 { name="rego"; version="1.6.1"; sha256="1givsz2myip3q7q0y8gmmv1n28f6d3haky5l43s1rz0v24x1s1hz"; depends=[Rcpp]; }; regplot = derive2 { name="regplot"; version="1.1"; sha256="048w0hnd2y8k27msjhw2g4ygck6i09698qk24sz7563z82gvj52w"; depends=[beanplot lme4 sm survival vioplot]; }; @@ -16188,7 +16421,7 @@ in with self; { rehydratoR = derive2 { name="rehydratoR"; version="0.5.2"; sha256="1d94m9hv1l72l9lph2vzbq4qqbfcgyhv2qk82p9vb8l2ckavjzvv"; depends=[dplyr jsonlite rtweet tibble]; }; reinstallr = derive2 { name="reinstallr"; version="0.1.5"; sha256="0yr1fzfahxqffjh5vm6y6b0iay8p0cirlzq2z4hlz7nci57fx5yr"; depends=[]; }; reinsureR = derive2 { name="reinsureR"; version="0.1.0"; sha256="19ayikzcq6z4i7xrlby76yy2nwvrsv6xdfrmvzyr7rz934flh8kd"; depends=[data_table dplyr ggplot2 viridis viridisLite]; }; - relSim = derive2 { name="relSim"; version="0.3.5"; sha256="1wgi1h764cfzfdakmajdhqcz5nldw2arllawsfy6n506ndi4l916"; depends=[multicool Rcpp rvest stringr xml2 xtable]; }; + relSim = derive2 { name="relSim"; version="1.0.0"; sha256="1f2dz25hkh2ak7cypn3zj9rabj3z7d59q4yhrrq4f6mzdki80d15"; depends=[multicool Rcpp rvest stringr xml2 xtable]; }; relaimpo = derive2 { name="relaimpo"; version="2.2-7"; sha256="1430p6kxh582k0saagns6mxz7qp6myf6n66hp1p02isl61w3w6sa"; depends=[boot corpcor MASS mitools survey]; }; relatable = derive2 { name="relatable"; version="1.0.0"; sha256="0147gin6dn76gg7gassar64f0w2gny1sh0k60v7914qhb4sj4s7i"; depends=[compare]; }; relations = derive2 { name="relations"; version="0.6-13"; sha256="1nnr0kcr3whbwzi36sg7wn46jp7r0hfkvcwlybvjsjhczcvc6ngq"; depends=[cluster sets slam]; }; @@ -16207,6 +16440,7 @@ in with self; { rematch = derive2 { name="rematch"; version="2.0.0"; sha256="09jwg3glp32q4ml4khhzi8j7bzg9zhqqdg1m6r8gibh756zzgnhm"; depends=[]; }; rematch2 = derive2 { name="rematch2"; version="2.1.2"; sha256="1fzpz8vhghw8ygwg6rsvfy3783pqk7ch029i5851lwypkplvz77y"; depends=[tibble]; }; remedy = derive2 { name="remedy"; version="0.1.0"; sha256="1lsa5az9jwy4ngjmfzcb7qj4wm8phsgajlnp5kwa4nav0g1dhb4s"; depends=[knitr rematch2 rstudioapi]; }; + remify = derive2 { name="remify"; version="3.2.4"; sha256="1dzpgrmmy7ag93prdfiqmhj7d7hlaiiwk897xgrkxzni20r1ck4h"; depends=[igraph Rcpp RcppArmadillo]; }; remindR = derive2 { name="remindR"; version="0.0.1"; sha256="0b27v2qm3z8l9vcng8f0rkphjidxkw5n017ysflx180qjizqq632"; depends=[assertthat]; }; remiod = derive2 { name="remiod"; version="1.0.2"; sha256="1darwljspxm6mkkp0d7xx375kvhlfwpzxc93yr2mb0mwi2877yi9"; depends=[coda data_table doFuture foreach future ggplot2 JointAI mathjaxr Matrix mcmcse ordinal progressr rjags survival]; }; remmy = derive2 { name="remmy"; version="0.1.0"; sha256="180b943fb1134r22avidv0s8gvsbx21kpl865l1xfzz95gzj6d7w"; depends=[curl httr2]; }; @@ -16215,10 +16449,12 @@ in with self; { remotes = derive2 { name="remotes"; version="2.4.2.1"; sha256="1790q52z4fy4zb1hnpn066q9fph53syl7gaxlbgbqq1dcndcma3v"; depends=[]; }; rempsyc = derive2 { name="rempsyc"; version="0.1.7"; sha256="1s4iv2ssz12pppjc9glhnryfkqnafid3fz9gmvhs9k5jk3cnq4pa"; depends=[dplyr rlang]; }; remss = derive2 { name="remss"; version="1.0.1"; sha256="15s3qvcfyp1880ddzpvgiw3q5av21052iy1vnpw0hib5pb7xfkfb"; depends=[survival]; }; + remstats = derive2 { name="remstats"; version="3.2.1"; sha256="1n1byjjaj1d87s3289szsr3in67fkx4dqyy2dzy86kijzvx2qinl"; depends=[Rcpp RcppArmadillo RcppProgress]; }; + remstimate = derive2 { name="remstimate"; version="2.3.8"; sha256="0i94w0wrdwcflay3a7lx85wi7mqkrl74zbsbf30sb3kr81iivjzh"; depends=[mvnfast Rcpp RcppArmadillo remify remstats trust]; }; renpow = derive2 { name="renpow"; version="0.1-1"; sha256="0kbfpzr17fvf5zzxpzdhvfmrqmlkba2w3rzxl5q5ac1w3h75gfhc"; depends=[]; }; rentrez = derive2 { name="rentrez"; version="1.2.3"; sha256="0x1g2f6hvkqqlb39z8m5qxhcvsizddic5i7rpqw0wy77xfbna9gv"; depends=[httr jsonlite XML]; }; renv = derive2 { name="renv"; version="1.0.3"; sha256="1d2y1yks34dg862zcxx03dak1h2gikis6mabmws2srja2hr18nlq"; depends=[]; }; - renz = derive2 { name="renz"; version="0.1.1"; sha256="0xanqqyz8cq8vfxy7vfxcf6fyh8r28bqpc7820fbl77g960cx5jw"; depends=[VGAM]; }; + renz = derive2 { name="renz"; version="0.2.1"; sha256="06zj7qkpjvl0zy33d67g4ig9z3mvay66bxz08l0sshgkas9nxbjq"; depends=[VGAM]; }; repairData = derive2 { name="repairData"; version="0.1.0"; sha256="1l5ag952165b0nm59mp9v768dp53xm51ckg01i4c6l04qfzx1lm7"; depends=[]; }; repana = derive2 { name="repana"; version="1.23.2"; sha256="1wic76sln37qjdrviaz689c5gjf4pc3ffdgvzcvjh0kjvl7d8jfh"; depends=[config DBI dplyr lubridate magrittr openxlsx pool processx readr rmarkdown rstudioapi]; }; repeated = derive2 { name="repeated"; version="1.1.7"; sha256="15d4igg4s87rj22kxi1sc1chfd1z7v08q6cvglabysaymbz1nbmw"; depends=[rmutil]; }; @@ -16233,20 +16469,21 @@ in with self; { repo = derive2 { name="repo"; version="2.1.5"; sha256="13gdka37kbs4mp16pf65bh28f0dkyalrcrdik6lc67jw8r9h94f9"; depends=[digest]; }; repoRter_nih = derive2 { name="repoRter.nih"; version="0.1.4"; sha256="0y3kx8hj8pg1rn1n8bp46r4nzmbgv6s44w5ydgh47vn8yav635qg"; depends=[assertthat crayon dplyr httr janitor jsonlite lubridate magrittr purrr tibble]; }; repolr = derive2 { name="repolr"; version="3.4"; sha256="13kmy09c7lk8p1mkdss0krcsfb6d7zcnqpwnl38zkanvh8q3fqhm"; depends=[Matrix Rcpp RcppArmadillo]; }; - report = derive2 { name="report"; version="0.5.7"; sha256="1g7px87d3gf0ddigmrcq442g9rx6zyzyihvqvd7pmpbrzz10zpka"; depends=[bayestestR datawizard effectsize insight parameters performance]; }; + report = derive2 { name="report"; version="0.5.8"; sha256="0frqqijhr98nqpy157capkx6h93z2jaxsl8r0vl9vk3k2g120wq1"; depends=[bayestestR datawizard effectsize insight parameters performance]; }; reportROC = derive2 { name="reportROC"; version="3.6"; sha256="1hfgyikd7l14yfr2cnabjbb67svydj1snfcagc4w4fxhdwqhd3f2"; depends=[pROC vcd]; }; reportReg = derive2 { name="reportReg"; version="0.3.0"; sha256="0qwrpn61x69hmgln5fpc58dqfa3pba0lgjjyj0f3fh96wc9jyhq1"; depends=[nlme]; }; - reportRmd = derive2 { name="reportRmd"; version="0.0.2"; sha256="07vk3wmcr47bfjnldfrs2j3dhq5yw9h6l14jahn7hzz5ap2zj0jq"; depends=[aod cmprsk geepack ggplot2 ggpubr gridExtra kableExtra knitr MASS pander plyr rlang rstatix scales survival]; }; - reporter = derive2 { name="reporter"; version="1.4.2"; sha256="1rym8kmmxw8fgjz1nl2mjzybmbjm8w4jj6bffihhq0v7jxihk3pa"; depends=[common crayon fmtr glue jpeg stringi withr zip]; }; + reportRmd = derive2 { name="reportRmd"; version="0.1.0"; sha256="0z0k6g0dxxni78x9z6h29ybgdj38cyb8ywn1b1lbjqb1nkjc9phs"; depends=[aod cmprsk cowplot geepack ggplot2 ggpubr gridExtra kableExtra knitr lifecycle MASS pander plyr rlang rstatix scales survival]; }; + reporter = derive2 { name="reporter"; version="1.4.3"; sha256="1ss757ijdhjvjjrbd6zc934vlyvmwgpfbcf0d51w2b10xgif25ap"; depends=[common crayon fmtr glue jpeg stringi withr zip]; }; reportfactory = derive2 { name="reportfactory"; version="0.4.0"; sha256="0mkk9gyd3l6m33mkc6w3fmgrzc6na03kwxxwgn0zb83bjpmyyl1z"; depends=[callr fs knitr rmarkdown rprojroot rstudioapi yaml]; }; reportr = derive2 { name="reportr"; version="1.3.0"; sha256="0zynplxqvbmf23cm2rsz3wz2jx6mv55z94mn1k44ny3lx625cnpw"; depends=[ore]; }; reporttools = derive2 { name="reporttools"; version="1.1.3"; sha256="0sx89qb66lczmzcsybxac4razcncf2xcxr0vfkvb3f8jqc7xwcik"; depends=[xtable]; }; repr = derive2 { name="repr"; version="1.1.6"; sha256="0gv72qydk4r070q3jcqakvfcm4r0n9zzzpl82s0w87iw6sdnqbix"; depends=[base64enc htmltools jsonlite pillar]; }; + represent = derive2 { name="represent"; version="1.0.1"; sha256="1n1gc363a07zgjxyzkdf75yks1agayzzmlqvr2h2n6l0g89m4gnz"; depends=[]; }; representr = derive2 { name="representr"; version="0.1.5"; sha256="0w84kh9nsa8861yfhj13f29wcdfs1mrhjr6jyvxk55f34vj7fhf1"; depends=[doParallel dplyr foreach Rcpp]; }; represtools = derive2 { name="represtools"; version="0.1.3"; sha256="00hnvzkkcl9d3k115i5l9gs0wah5d11amn7q62m1j158lkqlcfza"; depends=[whisker]; }; reprex = derive2 { name="reprex"; version="2.0.2"; sha256="14khx09yzn97xhags48lvym1g37h1l2ymvw6r1jlldhjc7i1cnx8"; depends=[callr cli clipr fs glue knitr lifecycle rlang rmarkdown rstudioapi withr]; }; reproducer = derive2 { name="reproducer"; version="0.5.3"; sha256="0nm8x1bwigbvkz7bbr313fmxb9ypk6dw2yl9g1cppdws2c6rq1mr"; depends=[dplyr GetoptLong ggplot2 gridExtra httr jsonlite lme4 MASS metafor nortest openxlsx readr reshape stringr tibble tidyr xtable]; }; - reproducible = derive2 { name="reproducible"; version="2.0.8"; sha256="01rximynm0n3xj04y4fw1dwdya1vcka6z6zncvsxcybnak6725qp"; depends=[data_table digest filelock fpCompare lobstr]; }; + reproducible = derive2 { name="reproducible"; version="2.0.10"; sha256="0q0wgbyr2gqjrxb1jwb6ysyqbgpsc0nq6501smqgrmhxfavb0m1d"; depends=[data_table digest filelock fpCompare fs lobstr]; }; reproj = derive2 { name="reproj"; version="0.4.3"; sha256="0bcg5bz2sl4d31iwr55nwr85p1jna9fpbcli26lf04dwznwmx0rl"; depends=[crsmeta PROJ proj4]; }; repsd = derive2 { name="repsd"; version="1.0.1"; sha256="102rnc2g31aijhwsmad86k2wjcvbvzi51c2rp0wk711riq5v7cm1"; depends=[progress]; }; repurrrsive = derive2 { name="repurrrsive"; version="1.1.0"; sha256="123hf7qhhs4jyjbmw4246zmhyngjq7r9ihgg3nxg594kja40khd9"; depends=[tibble]; }; @@ -16265,41 +16502,44 @@ in with self; { reservoir = derive2 { name="reservoir"; version="1.1.5"; sha256="1qvjq8j2gxp6b8m3k3822f9na8a1kbwzzsmq70m763dcq293rgiz"; depends=[gtools]; }; reservoirnet = derive2 { name="reservoirnet"; version="0.2.0"; sha256="0x87jglv7zyldagrz1kz68xi9l4j920zgpsbpzbj1ksxi2ypp98s"; depends=[dplyr ggplot2 ggpubr janitor magrittr reticulate rlang testthat]; }; reservr = derive2 { name="reservr"; version="0.0.2"; sha256="0w6bax0ycmix46mm5jmr49vl7l3rnvwg4vv6xq78hdczspdbc0g7"; depends=[assertthat BH generics glue keras matrixStats nloptr numDeriv purrr R6 Rcpp RcppArmadillo RcppParallel rlang]; }; - resevol = derive2 { name="resevol"; version="0.3.0.1"; sha256="13whjldpidagyaqh2s7isvs8qms6zw82v067h4zyrzfzh6q3xsa8"; depends=[]; }; + resevol = derive2 { name="resevol"; version="0.3.4.0"; sha256="0h716h7n11r95sv72j5rqn7x2bfnl7hi4nhhypy534i2cc8v4zr9"; depends=[]; }; reshape = derive2 { name="reshape"; version="0.8.9"; sha256="0j203qmc076x5lp6q2xi4dq4xdb73jmsa42rpxp1c37knnrph4br"; depends=[plyr]; }; reshape2 = derive2 { name="reshape2"; version="1.4.4"; sha256="1n0jrajpvc8hjkh9z4g8bwq63qy5vy5cgl2pzjardyih4ngcz3fq"; depends=[plyr Rcpp stringr]; }; resilience = derive2 { name="resilience"; version="2023.1.1"; sha256="0pa0c5l3jm5szn7vffg030krn7f9lz9riqvjz9n7waiszfs0mzdr"; depends=[doParallel foreach nptest]; }; - reslife = derive2 { name="reslife"; version="0.1.2"; sha256="0k9a8g9iv3vspcai7z00755l9d7nn5753k3ysd0pm3blsmyq2zpk"; depends=[flexsurv gsl pracma]; }; + reslife = derive2 { name="reslife"; version="0.2.1"; sha256="17n9p0kj5sx0zhdyfs4s15rwjkcx9hmly8m51xyv2y70vr1nl4cc"; depends=[flexsurv gsl pracma]; }; reslr = derive2 { name="reslr"; version="0.1.1"; sha256="0hklhkr0fxrhhi6apskq498z1vv1w90zsfvvc344rmj9qid2lj2a"; depends=[data_table dplyr fastDummies fields geosphere ggplot2 magrittr ncdf4 plyr posterior purrr R2jags stringr tidybayes tidyr]; }; resourcer = derive2 { name="resourcer"; version="1.4.0"; sha256="0rffkz2ybvr58jpa3kfiw4s3rk0cmrm9r5ca2abbzlcny7kxb7v5"; depends=[httr R6]; }; - respR = derive2 { name="respR"; version="2.3.1"; sha256="0y8s000071m9n1v64xgxyl09biih92v347332afsmak582nk6i6b"; depends=[data_table dplyr glue lubridate magrittr marelac purrr readxl roll segmented stringr xml2]; }; + respR = derive2 { name="respR"; version="2.3.2"; sha256="1nywhy50zbk4lvygm9vlkdya3pz1x3mkv8560r2nbcd8yd4w4y71"; depends=[data_table dplyr glue lubridate magrittr marelac purrr readxl roll segmented stringr xml2]; }; respirometry = derive2 { name="respirometry"; version="1.4.0"; sha256="0cb83xdd7b4mnipchqjdaf5lfbh9475gxpk7dbr9g26b4byrg7cc"; depends=[birk lubridate marelac measurements minpack_lm PKNCA seacarb segmented]; }; responsePatterns = derive2 { name="responsePatterns"; version="0.1.1"; sha256="0ym6jbacsi4lv9rcw3k80wiil94ymivm55c4hz6hwbv54ybkzlcj"; depends=[]; }; - restatapi = derive2 { name="restatapi"; version="0.22.1"; sha256="1bd9aggyps8352l01g9jpnvmqqw7inf3zy3mh4l99i3d8s9kdid4"; depends=[data_table rjson xml2]; }; + restatapi = derive2 { name="restatapi"; version="0.22.5"; sha256="1vaj20z45y3af1k38fqcxxkpn4fb8arwgm0q5jnf3shfq6ddnzyh"; depends=[data_table rjson xml2]; }; restatis = derive2 { name="restatis"; version="0.1.0"; sha256="0y36qdnadmcdmwik2iyjh8h47jchrbwpal8djy29hx7q1140ra2r"; depends=[askpass httr2 memoise readr tibble vctrs]; }; restaurant = derive2 { name="restaurant"; version="0.1.0"; sha256="1dr9nw5xkll1wnra2xi8dg2yiv85nibdg1i9lsn44v7cgr9vb32j"; depends=[]; }; - restez = derive2 { name="restez"; version="2.1.3"; sha256="1q008ykk75h19zqnkv339qx7zb7vmab8f9ywvr8qb7l1n3yxah76"; depends=[ape assertthat cli crayon curl DBI duckdb fs rentrez stringi]; }; + restez = derive2 { name="restez"; version="2.1.4"; sha256="1jzffv1lsxwa2dvkqx48ldwffghkg91vz99d9l3kjdxmg9gb8y9k"; depends=[ape assertthat cli crayon curl DBI duckdb fs rentrez stringi]; }; restfulr = derive2 { name="restfulr"; version="0.0.15"; sha256="14p6h0gjknqy5z2fprxw7waf4p0cd2qmp18s7qig4ylqn8gqzzs0"; depends=[RCurl rjson S4Vectors XML yaml]; }; restimizeapi = derive2 { name="restimizeapi"; version="1.0.0"; sha256="1ss6fng5pmqg6cafc256g9ddz8f660c68ysxfan6mn4gdaigz7lb"; depends=[RCurl RJSONIO]; }; restoptr = derive2 { name="restoptr"; version="1.0.6"; sha256="0m7nw277qgjdxfwx3i1k73l93rqyf766l2af9ymap9dl7hrp8jaq"; depends=[assertthat crayon magrittr rJava terra units]; }; restorepoint = derive2 { name="restorepoint"; version="0.2"; sha256="0pjp5dvycvfg75hhj8lrr2lrjn6n6bqj0ziwyd87lyi15b9j8w4s"; depends=[]; }; restriktor = derive2 { name="restriktor"; version="0.5-30"; sha256="1qlb892rx2i42mlidl5dm20a848j8cca8zq1d100la2829g9k49g"; depends=[boot ggplot2 ic_infer lavaan MASS mvtnorm norm quadprog]; }; + result = derive2 { name="result"; version="0.1.0"; sha256="031vviwvn85k7hl04c4hqxycj8mnr2j00gi2jqpwdxrxjaaf1dzb"; depends=[]; }; resumer = derive2 { name="resumer"; version="0.0.5"; sha256="0k3s2i102hvsag7jiahgfpjc09646xjpxcpv5x3d91ch3xipdc0b"; depends=[dplyr rmarkdown useful]; }; rethinker = derive2 { name="rethinker"; version="1.1.0"; sha256="02zfx08s5xisv1v4y16iqbddi9kb3fcr249b3414fzvs4nm5as94"; depends=[rjson]; }; rethnicity = derive2 { name="rethnicity"; version="0.2.4"; sha256="1h8d9q06dc98l55lqmjxf69ngvdj6r9fcck1bdvk0rin40q07zfk"; depends=[cli Rcpp RcppEigen RcppThread]; }; reticulate = derive2 { name="reticulate"; version="1.34.0"; sha256="01j2dr93r5a18irwbm6hlh2v0s2rc5bl6dcmds1m64c1rli8j3cd"; depends=[here jsonlite Matrix png rappdirs Rcpp RcppTOML rlang withr]; }; retriever = derive2 { name="retriever"; version="0.2.1"; sha256="0vachj8rzh8g55y18hz85bsrzr86614frdmr7wz6hszgiq8qgcxy"; depends=[pbapply preprocessCore]; }; + retrodesign = derive2 { name="retrodesign"; version="0.2.1"; sha256="19bhfmbhd2q4zlkgxm0v563rr4r30d79hsxr3micnzql4hgar2zp"; depends=[]; }; retroharmonize = derive2 { name="retroharmonize"; version="0.2.0"; sha256="10fwmm91p3dgad99a7imkg9cjlk0gy2bkpmzgfr6s9bp07splj6i"; depends=[assertthat dplyr fs glue haven here labelled magrittr pillar purrr rlang snakecase stringr tibble tidyr tidyselect vctrs]; }; retrosheet = derive2 { name="retrosheet"; version="1.1.5"; sha256="0d4s2c3jya5pnq3mcdxai3wv32149rr3d1q5qrzvk4f771s3l34m"; depends=[httr rvest stringi stringr xml2]; }; retry = derive2 { name="retry"; version="0.1.0"; sha256="1yfcfvszfjnvvnjcywgchyiyj3jk9nmvk3h40g6bc24xapfkfl2p"; depends=[later rlang]; }; reutils = derive2 { name="reutils"; version="0.2.3"; sha256="09dhf4s7wz3anrkzqi16abx64gk8ck2142kfd8pv71mjy3x548l7"; depends=[assertthat jsonlite RCurl tibble XML]; }; reval = derive2 { name="reval"; version="3.1-0"; sha256="1a2dmcfmnyzpfkyir3g1sz6s8dan2lzapq8v1dph5znmascv1180"; depends=[dplyr purrr rlang]; }; - revdbayes = derive2 { name="revdbayes"; version="1.5.2"; sha256="15h1p7q4l0zfa8vpyypkn32b716hwdp5agf7scf91jkhs3bflsbg"; depends=[bayesplot exdex Rcpp RcppArmadillo rust]; }; + revdbayes = derive2 { name="revdbayes"; version="1.5.3"; sha256="1pcz09zbgpivzykag087b0f2fz82m48idasddn85yh8wpv6ijsah"; depends=[bayesplot exdex Rcpp RcppArmadillo rust]; }; revealedPrefs = derive2 { name="revealedPrefs"; version="0.4.1"; sha256="1m8y1mj39bnf9q0n9mi0ashvb79lksx5dfkxb04qj2h5kkyxg49g"; depends=[pso Rcpp RcppArmadillo]; }; revealjs = derive2 { name="revealjs"; version="0.9"; sha256="0h4csxrcl1rzmj3g01nf0mr990zc8swrf4jvmxwqsyzx9v2cqbnc"; depends=[rmarkdown]; }; reveneraR = derive2 { name="reveneraR"; version="0.1.2"; sha256="0l5l9lqwisphjpf2ni0c0a3cg4xpkxy3sk4nvj93f6pra2fmg4rg"; depends=[dplyr httr jsonlite magrittr purrr tibble tidyr tidyselect]; }; revengc = derive2 { name="revengc"; version="1.0.4"; sha256="1nipkff9zmkdi509qfdrmvsq5c643xd7bzzw5bchxd8nmfqb412i"; depends=[dplyr mipfp stringr truncdist]; }; reverseR = derive2 { name="reverseR"; version="0.1"; sha256="0pzk97q1zs5g1v4ngqd6bkwwxcp89j890nycpc99ipycbgm2r9yw"; depends=[DT knitr markdown shiny]; }; + revert = derive2 { name="revert"; version="0.0.1"; sha256="1x3ykqlyhy9z1rizp4y1p90mkl2wv56k87z2qcz69dznys34z5xy"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg38 GenomicRanges IRanges Rsamtools]; }; revgeo = derive2 { name="revgeo"; version="0.15"; sha256="1ns7d1817475lriss6wwgvdm6lj760p40yxqaifla13c2xb73a55"; depends=[RCurl RJSONIO]; }; revpref = derive2 { name="revpref"; version="0.1.0"; sha256="07gbwrwmnq5b48fgdb7m2j8ygz60qm5m23ai7g7yidwk2fayq7ym"; depends=[gtools]; }; revss = derive2 { name="revss"; version="1.0.5"; sha256="1dyz4hswkg16k0lr2phcmyq9x3wm09sdg4kvq663qhb42i54yjfs"; depends=[]; }; @@ -16307,6 +16547,7 @@ in with self; { revulyticsR = derive2 { name="revulyticsR"; version="0.0.3"; sha256="0dz9c26qwasgpp6a5fqh1rgq0hp9dhsrcm1h2hbp0cisri8iwsjf"; depends=[dplyr httr jsonlite magrittr purrr tibble tidyr tidyselect]; }; rewie = derive2 { name="rewie"; version="0.1.0"; sha256="1ysrpd2cqmz27sjj3dh0wpg86685d708kjwiqybwjlw9ap55jb06"; depends=[lme4 MASS plm rockchalk]; }; rex = derive2 { name="rex"; version="1.2.1"; sha256="1mmzlc3j7xa0rbjxa369f4sr0iw3gq58g8fmjjxbsjvfq14ychmg"; depends=[lazyeval]; }; + rexpokit = derive2 { name="rexpokit"; version="0.26.6.14"; sha256="1fybxxmwm0xw3pwv5lx0vkmi4f215hvnwk3kbwm3031c1vr662l4"; depends=[Rcpp]; }; rextendr = derive2 { name="rextendr"; version="0.3.1"; sha256="1jm0vvpqzycbp6an2vi3wmjavhj2wlnncvgxcd1nfzn0fw7vpbrc"; depends=[brio callr cli desc dplyr glue jsonlite pkgbuild processx purrr rlang rprojroot stringi tibble vctrs withr]; }; rfPermute = derive2 { name="rfPermute"; version="2.5.2"; sha256="060v52jil5zannzinc6nvzwqd8kw0glpj3xflw606p9sxpzx11rl"; depends=[abind dplyr ggplot2 gridExtra magrittr randomForest rlang scales swfscMisc tibble tidyr]; }; rfUtilities = derive2 { name="rfUtilities"; version="2.1-5"; sha256="1anwvmxn3xrc1aqxl75rzlk4wby8l54rmkp0bgi8dgbz2l223xr0"; depends=[cluster randomForest]; }; @@ -16326,6 +16567,7 @@ in with self; { rflsgen = derive2 { name="rflsgen"; version="1.2.1"; sha256="0cfvbzc9a09738ygrq5jsjniblb8slfvmnscgk7jx0dprgcxj7yn"; depends=[checkmate jsonlite rJava terra]; }; rfm = derive2 { name="rfm"; version="0.2.2"; sha256="1s8h9ll4l5xq3m7ib83zrab49p5q4wclk8qiy2hgjr2hq1sb7wak"; depends=[dplyr ggplot2 ggthemes lubridate magrittr RColorBrewer rlang tibble tidyr xplorerr]; }; rfoaas = derive2 { name="rfoaas"; version="2.3.2"; sha256="03rz1cas0anmfpnax66nr3bsiqgkq02wbvslvqc0q9ayl6p02avh"; depends=[httr]; }; + rfold = derive2 { name="rfold"; version="0.1.0"; sha256="037vpnqvxfnfpiskyv43v7iv2k6w5aaas3kmajsjrs0axjv711fm"; depends=[cli fs here usethis]; }; rfordummies = derive2 { name="rfordummies"; version="0.1.6"; sha256="01xv6ds3h8gvi1wi5hgy3r1dhi0767mcgsnshvhva3bnvf1a8398"; depends=[]; }; rfvimptest = derive2 { name="rfvimptest"; version="0.1.3"; sha256="1c14591y4wpi5r7f6azzyac93h6klgk8jqfaszzp01krkb8z2cdy"; depends=[party permimp ranger]; }; rfviz = derive2 { name="rfviz"; version="1.0.1"; sha256="1pxr9bsqg27vgbngj89hhjq0gyzgdlg69rz6kzvvd8gclg42wisv"; depends=[loon randomForest]; }; @@ -16334,29 +16576,30 @@ in with self; { rgbif = derive2 { name="rgbif"; version="3.7.8"; sha256="18xihlvbaagmp6qdbknq6qblbbvz0g1r7shngh0dzfpvwr6bily0"; depends=[crul data_table ggplot2 jsonlite lazyeval magrittr oai R6 tibble whisker wk xml2]; }; rgdax = derive2 { name="rgdax"; version="1.2.1"; sha256="01hpyyhb6jcw9w0q9h4ghgh4cbba27mfl9zdv4vv4ppakvl80czl"; depends=[digest httr jsonlite plyr RCurl]; }; rgee = derive2 { name="rgee"; version="1.1.7"; sha256="1v6xczz7n3gby7ckh323yr5jqvzsvpjy1qszqh9hk7a56m3y31mh"; depends=[cli crayon jsonlite leafem leaflet magrittr processx R6 reticulate rstudioapi]; }; - rgeedim = derive2 { name="rgeedim"; version="0.2.5"; sha256="0agi04bz9rbl2pwrrn0wgb359198sg3ia87rnarb4ckrrnj2n5gs"; depends=[jsonlite reticulate]; }; + rgeedim = derive2 { name="rgeedim"; version="0.2.6"; sha256="0ywv2azzfg6pjy4341949r2317mpicyb2mgkrvlhlxgn3apy0ah3"; depends=[jsonlite reticulate]; }; rgen = derive2 { name="rgen"; version="0.0.1"; sha256="0gl82v09q1ha58wd1014s46wzkx1yf348bc7jkl6s4qdc6c4vsb8"; depends=[]; }; rgenius = derive2 { name="rgenius"; version="0.1.0"; sha256="1gpglnhicyv16ym224wzaw52w9xr63slm75wvidl3z14izzyy7ga"; depends=[doParallel dplyr foreach httr purrr rvest stringr tibble]; }; - rgenoud = derive2 { name="rgenoud"; version="5.9-0.3"; sha256="0pxmisc0vsdchqaaxqcblnhhviizgcwhvsbklr3rq7vrmn6hlmii"; depends=[]; }; + rgenoud = derive2 { name="rgenoud"; version="5.9-0.10"; sha256="1sfd59lislwcb81j56a5z9b1d62r69hb6gg05g9x4zh919jfwi76"; depends=[]; }; + rgeoboundaries = derive2 { name="rgeoboundaries"; version="1.2.9"; sha256="1xzh80niwdl9zw8skidfl5g025w3sh66pia65sm7inqvzslszppy"; depends=[countrycode crul glue hoardr jsonlite lifecycle memoise sf]; }; rgeoda = derive2 { name="rgeoda"; version="0.0.10-4"; sha256="18rcrlah1iaqvf90cymh71c8wpgy3yxlwlq84waxilpccwhd68x0"; depends=[BH digest Rcpp sf]; }; rgeomstats = derive2 { name="rgeomstats"; version="0.0.1"; sha256="1fy5fvkifv80sf3x0d2y3vyv7adn0h57q1hvip1phcvxg8p5prff"; depends=[cli purrr R6 Rdpack reticulate rlang]; }; rgeopat2 = derive2 { name="rgeopat2"; version="0.4.0"; sha256="0l3gj2g4z7fcn5nx9kj3cz4a0g7k4f95gpwxsi82fybsdx5j5byv"; depends=[readr sf stringr]; }; rgeoprofile = derive2 { name="rgeoprofile"; version="0.2.2"; sha256="1nk3qzwcvvq3n1da480zk047wl738fjyvarakm00wwrbnb3ax70j"; depends=[geosphere leaflet pals RANN raster sp spatstat_geom splancs]; }; rgexf = derive2 { name="rgexf"; version="0.16.2"; sha256="00c2zka1n3k7p1l0mlchr063s6x58p9r3fb64d4wgl4rvsq55q3f"; depends=[igraph servr XML]; }; rgho = derive2 { name="rgho"; version="3.0.1"; sha256="19am8xhflib4062rkidn1501hq5wlj3mjx2hm4vf3jpzgqiqdj59"; depends=[curl dplyr httr lifecycle magrittr ODataQuery rlang tibble tidyr]; }; - rgl = derive2 { name="rgl"; version="1.2.1"; sha256="16ybdly3cjm6ibvhfad7d5k6bxaxf33l5s1s766hy9kza8skyani"; depends=[base64enc htmltools htmlwidgets jsonlite knitr magrittr mime R6]; }; + rgl = derive2 { name="rgl"; version="1.2.8"; sha256="1x0p2yldg2mjf64xd5dd0bidzgy7b39w7zn18ghan2rdf0wffdg5"; depends=[base64enc htmltools htmlwidgets jsonlite knitr magrittr mime R6]; }; rgl2gltf = derive2 { name="rgl2gltf"; version="1.0.3"; sha256="0krn4dp8xf6z5363agz42v4dwhhxdrxpqzhmf9yd8xl2l3yj6pfp"; depends=[base64enc jsonlite R6 rgl]; }; rglobi = derive2 { name="rglobi"; version="0.3.4"; sha256="14jwl1cl20q7sgsiidd2sd2p2vjjfvqam0bijg9j8328g27cbi63"; depends=[curl RCurl readr]; }; rglplus = derive2 { name="rglplus"; version="1.1"; sha256="1i9i62214yljaxplzk8qk9dbslj1shgddmdvpqj35nr45pavnnqm"; depends=[rgl]; }; rglwidget = derive2 { name="rglwidget"; version="0.2.1"; sha256="0siqxn3gyl98i84p0yha821b4rdrp2i0942mkx819wnf7qwrpqcv"; depends=[rgl]; }; rgnoisefilt = derive2 { name="rgnoisefilt"; version="1.1.2"; sha256="0rdjbxws1bimpnwfv46yycafvwjc2lcqgdf993f5mm2sg2fxv2da"; depends=[arules class e1071 entropy FNN gbm ggplot2 infotheo kknn modelr nnet randomForest rpart]; }; - rgnparser = derive2 { name="rgnparser"; version="0.2.6"; sha256="17s08arj7hdzmm2cbmwk4cvdlgrviyjsfm8qpvc5j7sjd6b48sdq"; depends=[jsonlite readr sys tibble]; }; + rgnparser = derive2 { name="rgnparser"; version="0.3.0"; sha256="0fjkbgrglybvjj2cqswkf8wjxqad91h6xv1pf9ly5iggc2z830v1"; depends=[jsonlite lifecycle readr sys tibble]; }; rgoogleads = derive2 { name="rgoogleads"; version="0.10.0"; sha256="1v2g580js7avyqd02d9vyawj04x3yil6iw3w865h5901k40q817d"; depends=[cachem cli dplyr gargle httr jsonlite memoise pbapply purrr rappdirs rlang rlist rvest snakecase stringr tidyr withr]; }; rgoogleclassroom = derive2 { name="rgoogleclassroom"; version="0.9.1"; sha256="0s4s5ipvnbwrf76ihzcjqkf3l1j008gn0ncl2a4znp9ka432gk49"; depends=[assertthat attempt curl dplyr httr jsonlite knitr lubridate magrittr openssl ottrpal purrr R6 stringr]; }; rgoogleslides = derive2 { name="rgoogleslides"; version="0.3.2"; sha256="0h9gws1vcf0zdd21d8b65c2yz9kxppp3218h5lhd5iz879ajwa2i"; depends=[assertthat httr jsonlite R6]; }; rgplates = derive2 { name="rgplates"; version="0.3.2"; sha256="07yyd00lijzm1ym2zi4h74wm6d4lynm57k71g0za50fmch2jhqyp"; depends=[sf]; }; - rgraph6 = derive2 { name="rgraph6"; version="2.0-2"; sha256="136imihzm2x6i9d60a8wbv2mc1v2r9rsswnic8q7kdp7l1625xa6"; depends=[Rcpp]; }; - rgrass = derive2 { name="rgrass"; version="0.3-9"; sha256="06zck7mwi2gv6qdxl2rj00kasyf5injb61hlmlcslr4scj5vdcq6"; depends=[XML]; }; + rgraph6 = derive2 { name="rgraph6"; version="2.0-3"; sha256="148ii731s7r1pgmsvnciinlf1ciabs2b9i77v1xbv58lw2yjahxn"; depends=[Rcpp]; }; + rgrass = derive2 { name="rgrass"; version="0.4-1"; sha256="1w7avihvgcpidw4bp51c2p37azjqgsn6n7g49djnj5hypb0xm0gk"; depends=[xml2]; }; rgsp = derive2 { name="rgsp"; version="0.2.0"; sha256="1fk0k479srfr0f4a5abyzcrzwy9hr1v5xf0jgs36fbim9bh7njlc"; depends=[dplyr magrittr tibble]; }; rgtmx = derive2 { name="rgtmx"; version="0.1.4"; sha256="0zqab6zhfkc302nsa13nbi5bc45xwrhsrn42g2jnjw2xpnfk3ynz"; depends=[httr jsonlite]; }; rgugik = derive2 { name="rgugik"; version="0.4.0"; sha256="0lkjnwg679fn6ii86h3w6n9b9aylp7m5bipji46bi92v2s2sssm2"; depends=[jsonlite sf]; }; @@ -16386,7 +16629,7 @@ in with self; { ricu = derive2 { name="ricu"; version="0.5.6"; sha256="0ajj15hpmsnhkxsnlsbvrdp3bwsbkrl1479p5zfgmzym8rdfirsj"; depends=[assertthat backports cli curl data_table fansi fst jsonlite openssl prt readr rlang tibble vctrs]; }; ridge = derive2 { name="ridge"; version="3.3"; sha256="1xb03ir706k2c3y2kpa4dvnz5i0qhm2ghm7syng0kalpdz7swbaw"; depends=[]; }; ridgetorus = derive2 { name="ridgetorus"; version="1.0.2"; sha256="04wabvf7agyk8djfqn41zcsj33940vx32zzf6811h4n5bs14kp65"; depends=[circular Rcpp RcppArmadillo rootSolve sdetorus sphunif]; }; - ridgregextra = derive2 { name="ridgregextra"; version="0.1.0"; sha256="08dsh09pcm9s8903lszzk2r3zi9hnvm6hzajwvqc3gkpjcs2q7bp"; depends=[isdals mctest plotly]; }; + ridgregextra = derive2 { name="ridgregextra"; version="0.1.1"; sha256="1xv6icprb2i5cy80i8aqv72yxpg4ybi6hc5y4hvbhvs6m22ydkiq"; depends=[isdals mctest plotly]; }; ridigbio = derive2 { name="ridigbio"; version="0.3.7"; sha256="0nbd182hjs0minn7vn0b9mphc4yc027pb2qpy96dxghgm6l90amg"; depends=[httr jsonlite plyr]; }; ridittools = derive2 { name="ridittools"; version="0.1"; sha256="1m9xbwxb277l4cd85qxmpw66gyavpwamgwr8kyf8vqarzfbwiilr"; depends=[]; }; riem = derive2 { name="riem"; version="0.3.0"; sha256="0a0nl1857x7qw8y8n5fq9hfhh1s25cihd2532zxfyvy14icwf72i"; depends=[httr2 jsonlite lubridate magrittr purrr rlang tibble]; }; @@ -16397,43 +16640,44 @@ in with self; { rimu = derive2 { name="rimu"; version="0.6"; sha256="0233dxj6z87piz88v15yg7gby0vm44mqhf76944lr8z17w2rrf8m"; depends=[ggplot2 UpSetR]; }; rinat = derive2 { name="rinat"; version="0.1.9"; sha256="05vi5fggqkj64z0sndngjs7vdvxgy2j5xarccllkcrk9mbzyipvc"; depends=[curl ggplot2 httr jsonlite maps plyr sp]; }; rineq = derive2 { name="rineq"; version="0.2.3"; sha256="0z8ngd11nbi0ibc3cqg20ihzhf2gcs4w4nkbb69wnyf86fxf001w"; depends=[]; }; - ring = derive2 { name="ring"; version="1.0.4"; sha256="166ma52axbmarwbzkqqcfcms9q9a4yqmsq9cqbmgpkkwm595ywij"; depends=[R6]; }; + ring = derive2 { name="ring"; version="1.0.5"; sha256="0mvrmh0axqlrdq3y5qaxydbindhv34gm4jagmq0bchrdvh1db2s4"; depends=[R6]; }; ringostat = derive2 { name="ringostat"; version="0.1.5"; sha256="1g2425jig3zhrv0vmr5nb5fqj34vcpmvbly7gc94plsv7wvgxvv3"; depends=[cli httr2 readr stringr]; }; rintcal = derive2 { name="rintcal"; version="0.6.4"; sha256="0gc6wzmhvbmhvcxl17bhdzcms5zqvc7bl2s2jbhcqr010zignybs"; depends=[data_table jsonlite]; }; rintimg = derive2 { name="rintimg"; version="0.1.0"; sha256="0jzs4mdwpzbpl0wchyhl3cpywk25ayaxalr12p4cnjl7vnmdm7dp"; depends=[glue htmltools]; }; - rintrojs = derive2 { name="rintrojs"; version="0.3.2"; sha256="19lpq421hrs1wc9bnimbwxx35p8bbzil3x1h9l28gjayn4djmjsh"; depends=[jsonlite shiny]; }; + rintrojs = derive2 { name="rintrojs"; version="0.3.3"; sha256="1fy5lz9d9njs4yrnwrrn0n1fn0chccgi1gzn4qz4g6adr3v35rgw"; depends=[jsonlite shiny]; }; rio = derive2 { name="rio"; version="1.0.1"; sha256="1vkvajlmp8kgmkadamy0xm885whfkwacq2jxcrshz1w8amy16k3m"; depends=[curl data_table foreign haven lifecycle R_utils readxl stringi tibble writexl]; }; rioja = derive2 { name="rioja"; version="1.0-6"; sha256="029p70d3ih5prnjxrk60rnqnfky1xkajmq6ldf6sz8bq6idkn2d3"; depends=[mgcv vegan]; }; ripc = derive2 { name="ripc"; version="0.2.0"; sha256="06kxi32ffg9ai0jl35mfh10vdf3p72s5vijk8aalvln39b0121g7"; depends=[countrycode dplyr httr lifecycle lubridate magrittr purrr rlang stringr tidyr]; }; ripserr = derive2 { name="ripserr"; version="0.1.1"; sha256="1rwsd1yi5vrzdscjgr27fw0d1a6nkc8g2w5hqgqijiwm25h4wl17"; depends=[Rcpp]; }; - rirods = derive2 { name="rirods"; version="0.1.1"; sha256="0sgwxl0grkxb4g9mzsxshspdpciys0p5fi4kq3ihiglxrp3gl9aw"; depends=[askpass base64enc httr2 rappdirs withr]; }; + rirods = derive2 { name="rirods"; version="0.1.2"; sha256="1960204g9iinhfizpn9blmw5qp633s5n090hmh9yq4azf9calrpx"; depends=[askpass base64enc httr2 rappdirs withr]; }; rise = derive2 { name="rise"; version="1.0.4"; sha256="12r7mbaxp9pjypbpjxlsbqg7spw80gjgm2w0lsvgvclffc50a6ni"; depends=[dplyr ggplot2]; }; riskCommunicator = derive2 { name="riskCommunicator"; version="1.0.1"; sha256="07rfqaf5dpj0wgbz65kdxzl762w8k5a2fsfmg1g895y2i5npq6mz"; depends=[boot dplyr ggplot2 ggpubr magrittr MASS purrr rlang tidyr tidyselect]; }; riskParityPortfolio = derive2 { name="riskParityPortfolio"; version="0.2.2"; sha256="1n2z1vhslrip209j79wm03wmwqdcnbm939sir2wfs5h2cfv126xk"; depends=[alabama Matrix nloptr quadprog Rcpp RcppEigen]; }; riskPredictClustData = derive2 { name="riskPredictClustData"; version="0.2.6"; sha256="0mvy9299pg374gvvqs9lmj2j0f3bzyy279kjpz7jq35hkgz5wif3"; depends=[gee Hmisc MASS mvtnorm]; }; - riskRegression = derive2 { name="riskRegression"; version="2023.09.08"; sha256="08azk0b45vqnnhnwb64lv9brnkykj4hsbn8w5kdnvkhrpi78vw74"; depends=[cmprsk data_table doParallel foreach ggplot2 lattice lava mets mvtnorm plotrix prodlim Publish ranger Rcpp RcppArmadillo rms survival timereg]; }; + riskRegression = derive2 { name="riskRegression"; version="2023.12.21"; sha256="07cvj86v2k1i34yrsqcgl2wqxlbbmslbbilvcnvkwfsk9l6ajk5c"; depends=[cmprsk data_table doParallel foreach ggplot2 lattice lava mets mvtnorm plotrix prodlim Publish ranger Rcpp RcppArmadillo rms survival timereg]; }; riskSimul = derive2 { name="riskSimul"; version="0.1.2"; sha256="05n5ffkjdhy799zhv7jd38am0yp3k8240z0abf73bi4mm3bw2raq"; depends=[Runuran]; }; riskclustr = derive2 { name="riskclustr"; version="0.4.0"; sha256="1b5pjnfz6n716fn1va4kl4y3jzf48sm0i2xaxw0225vmmvq06d9g"; depends=[Matrix mlogit stringr]; }; riskmetric = derive2 { name="riskmetric"; version="0.2.3"; sha256="0fsar4fklb7dy7np0dr5mzd42w3cqm80ag10zx1kk4pvm53653i6"; depends=[backports BiocManager covr cranlogs curl devtools httr memoise pillar pkgload tibble urltools vctrs xml2]; }; risks = derive2 { name="risks"; version="0.4.2"; sha256="1f28v9yqcbg2qp0xilggm61phyqcwfn9rw0vlg09wv12g3ii05xp"; depends=[bcaboot boot broom dplyr purrr rlang sandwich tibble tidyr]; }; + riskscores = derive2 { name="riskscores"; version="1.0.2"; sha256="068g0dq3cjnfrb09bkcivbm9n62lb59bvmkbh468hnzayp4lli9w"; depends=[dplyr foreach ggplot2 magrittr]; }; risksetROC = derive2 { name="risksetROC"; version="1.0.4.1"; sha256="11x6qga8m8xgl4hlnjsznd4sicfxc5pbi4gv27s0gnjml0f3irhg"; depends=[MASS survival]; }; riskyr = derive2 { name="riskyr"; version="0.4.0"; sha256="1ki3r46d73ws0gnm93llmkv42yfm0mfwvxxafnrhsdcj5kinl4ir"; depends=[]; }; ritis = derive2 { name="ritis"; version="1.0.0"; sha256="0dk1hpj2cahlw4lcdjnnllpnvdimaml57sfcw07iz2s0f8c24yrj"; depends=[crul data_table jsonlite solrium tibble]; }; riv = derive2 { name="riv"; version="2.0-5"; sha256="0n19jlrs12iysq45xyi3zvghkircg0ww5vbsfpnqkw5b22zsv30s"; depends=[MASS quantreg rrcov]; }; riverconn = derive2 { name="riverconn"; version="0.3.28"; sha256="063sjfp3p9ahfm9w5pb6p7hs4948fc57yw3i10mf5lcd6v12nxzx"; depends=[dodgr doParallel dplyr foreach igraph magrittr reshape2 rlang tidyr tidyselect]; }; - riverdist = derive2 { name="riverdist"; version="0.16.1"; sha256="0n4warz8994zln9x1k1cnqgzn9rh8768p5dw8ywc3qbc2kr10ha9"; depends=[sf]; }; + riverdist = derive2 { name="riverdist"; version="0.16.2"; sha256="0ravdkj2b0fr4v441yvjhr6a46jimb2n7dxr1gv525lysjq2fi5a"; depends=[sf]; }; rivernet = derive2 { name="rivernet"; version="1.2.3"; sha256="197y3sv75a7wg1i7a7m5yxpsv6j5hyv0fs5anqkxbz45qhhf163z"; depends=[]; }; - rivnet = derive2 { name="rivnet"; version="0.3.2"; sha256="020167ssaw7a5fsf1snydrf1n0cr2ivqspjywzv8xc14mlhvrb8c"; depends=[curl elevatr fields OCNet raster Rcpp sf spam terra traudem]; }; + rivnet = derive2 { name="rivnet"; version="0.4.0"; sha256="0i55yb7v2vl8lks5ax3v8mkwy3hspdh1xsy6m2hyqf1azh10p324"; depends=[curl elevatr fields OCNet raster Rcpp sf spam terra traudem]; }; rivr = derive2 { name="rivr"; version="1.2-3"; sha256="10k4cqrlzcy5g0yqbkrzxfz0dwsnf8kgmfq011lj13kxpb38bpvy"; depends=[Rcpp]; }; rjade = derive2 { name="rjade"; version="0.1.1"; sha256="0wv1vpy8ql1r9ya5mfqxdj7jv5wk029g8hjjp0xqp8dm507vj11x"; depends=[V8]; }; - rjags = derive2 { name="rjags"; version="4-14"; sha256="1jz26x49zsjl95whlkjsr8h98j68ajv2gc7qqnxy732r0bvmsfri"; depends=[coda]; }; + rjags = derive2 { name="rjags"; version="4-15"; sha256="188qxyanny4yb1cq8hrz0y7pjafgvj0vhly0gaw271dam8glrk9m"; depends=[coda]; }; rjdmarkdown = derive2 { name="rjdmarkdown"; version="0.2.2"; sha256="1g1r11zi8agifndlnayrh1vbz570s2x535kn89yz1llrk378v9c5"; depends=[kableExtra knitr magrittr RJDemetra]; }; rjdqa = derive2 { name="rjdqa"; version="0.1.2"; sha256="1pxdavk9806zmc5l201ir753sngg3djm7knsl34jnjqbdys621h5"; depends=[ggdemetra plotrix RJDemetra]; }; rje = derive2 { name="rje"; version="1.12.1"; sha256="07a1wbn5ps9ygfi25fffgmrzw90izj4yk8gxb47r85x6lvqv1p0h"; depends=[]; }; rjmcmc = derive2 { name="rjmcmc"; version="0.4.5"; sha256="14rzvp6z5avlcnmlmvb6w4gvlh6v4ncbcai3v4c4svnjv555vz45"; depends=[coda madness mvtnorm]; }; rjqpd = derive2 { name="rjqpd"; version="0.2.3"; sha256="14vbp9s2859h4n3m3bq830nvxvk58h3mvvdnb27qsalbcfwd94v5"; depends=[]; }; rjson = derive2 { name="rjson"; version="0.2.21"; sha256="1qm27r1w677zg31gsiln60hcciszbymkw78cnaq7s36cbk9mcawq"; depends=[]; }; - rjsoncons = derive2 { name="rjsoncons"; version="1.0.0"; sha256="1y6gf9w914wnygd41iwzy0vr16c4mwacx4pjqqncd3z9h120chpr"; depends=[cpp11 jsonlite]; }; + rjsoncons = derive2 { name="rjsoncons"; version="1.1.0"; sha256="0l6p38szihl4wv7vag0bgkqqfgyqicnhz7aqd1jdfzfyzi0q77mr"; depends=[cpp11]; }; rjstat = derive2 { name="rjstat"; version="0.4.3"; sha256="1x49x3f00dv0fxnyl0kj03q6z654mv0dhzhh8cbn1r4pg5pj63ns"; depends=[checkmate jsonlite]; }; rjtools = derive2 { name="rjtools"; version="1.0.12"; sha256="1sdyxnj4qf693cvmxjgbykamn2b69pznsgr5qsjia20pq72yzijk"; depends=[BiocManager bookdown callr cli distill fs glue here hunspell purrr rlang rmarkdown stringr tinytex whisker xfun yaml yesno]; }; rjwsacruncher = derive2 { name="rjwsacruncher"; version="0.2.0"; sha256="14yg801mxj0kvg3aswxvhbncs6mh63ddk0mnfawm39ycgwc19g3d"; depends=[XML]; }; @@ -16441,19 +16685,22 @@ in with self; { rkeops = derive2 { name="rkeops"; version="1.4.2.2"; sha256="1b2sdbhx1ar1325mf1xgc561as9x8q8vjqslly9xms2h572c8yn3"; depends=[openssl Rcpp RcppEigen RhpcBLASctl stringr]; }; rkt = derive2 { name="rkt"; version="1.6"; sha256="1sqij8ivjrrb1lii3jwvgsx9zqv47ib1lhrh6zvvh5a67didwrih"; depends=[]; }; rkvo = derive2 { name="rkvo"; version="0.1"; sha256="0ci8jqf9nc8hb063nckxdnp0nlyr4ghby356lxm00anw44jlmw8v"; depends=[Rcpp]; }; - rlang = derive2 { name="rlang"; version="1.1.1"; sha256="16fsibxbh4fy62x6fw358qbniw085qs1wjyr75n22xv9g6kwjpjy"; depends=[]; }; - rlas = derive2 { name="rlas"; version="1.6.3"; sha256="15jv9plpmymsbzhw518islbcxpxcjbdlrjpvhfwhsnl2qskm4g2x"; depends=[BH data_table Rcpp]; }; - rlc = derive2 { name="rlc"; version="0.4.1"; sha256="1znx2749m9af3jq3avxf50amkhzvimr5ybwmk4g9vhwka86c3vqk"; depends=[hwriter jrc jsonlite plyr R6 stringr]; }; + rlang = derive2 { name="rlang"; version="1.1.2"; sha256="14l0dz36wav2jbz0dd3w34va68lrhr7fgd9dqf1v4nawdvff23ia"; depends=[]; }; + rlas = derive2 { name="rlas"; version="1.7.0"; sha256="0abbzh17cyiamgdln55b23nsywr3p60bk7n3wv70asg945pqnxhi"; depends=[BH data_table Rcpp]; }; + rlc = derive2 { name="rlc"; version="0.5.0"; sha256="1n13hlspsb118md6nh1w09gww4b58kxqf3lcp8g3zv14hr2dgwkr"; depends=[hwriter jrc jsonlite plyr R6 stringr]; }; rlcv = derive2 { name="rlcv"; version="1.0.0"; sha256="00fz949jabbzci22yjlhc7bh4j2h44llplcrgsrbi3h97lrg7hc0"; depends=[statmod]; }; rle = derive2 { name="rle"; version="0.9.2"; sha256="0sagl0jggg40lihzy7pfq4593rfvc3b3f7g6ggi85s7n18qvwg40"; depends=[]; }; rleafmap = derive2 { name="rleafmap"; version="0.2.1"; sha256="19ad38pqwv8ayyzb1aln9gn7rfn3gam0dbw93pl37nb9vnl81002"; depends=[knitr raster sp]; }; - rlecuyer = derive2 { name="rlecuyer"; version="0.3-7"; sha256="0g5z26wsbv3wzrc3gl1z97qxdk5m2pvfg3f5zqkz98wzh1z49b35"; depends=[]; }; + rlecuyer = derive2 { name="rlecuyer"; version="0.3-8"; sha256="1jbm5h8zbsx1yw148piw9p0rj9a7cm0ywgidrzi5ylrp6dad7gk6"; depends=[]; }; rlemon = derive2 { name="rlemon"; version="0.2.1"; sha256="0x83l5i30ppmq5mhq0qxwz5ql6qzwk02bbwdykd6hz0r9w1zl62a"; depends=[Rcpp]; }; rless = derive2 { name="rless"; version="0.1.1"; sha256="0ham8kf2hbswrcnc5i5b3svywdwq3kwp9n66n4k9sllahl4x9jdn"; depends=[V8]; }; rlfsm = derive2 { name="rlfsm"; version="1.1.2"; sha256="0qlyz4v1966x73hx3lwv1kgk18304xfp9qm66cb9a6g8bk54xp8z"; depends=[doParallel foreach ggplot2 plyr Rcpp Rdpack reshape2 stabledist]; }; - rliger = derive2 { name="rliger"; version="1.0.0"; sha256="1gqdwmy073sg48id015q02bx20xsqyc6jpbw4nym3c09cqz681dr"; depends=[cowplot doParallel dplyr FNN foreach ggplot2 ggrepel hdf5r ica irlba Matrix mclust patchwork plyr psych RANN Rcpp RcppArmadillo RcppEigen RcppProgress rlang Rtsne uwot]; }; + rlibkriging = derive2 { name="rlibkriging"; version="0.8-0.1"; sha256="07k0vb21bk83ygvgks4fspfik5zjwlqilwjy2rjzimhikx87srgk"; depends=[DiceKriging Rcpp RcppArmadillo]; }; + rliger = derive2 { name="rliger"; version="1.0.1"; sha256="0x2b1524ygsyql4kqqycjnanbm5cjlaypxwzv69bdhv6ik0whj2s"; depends=[cowplot doParallel dplyr FNN foreach ggplot2 ggrepel hdf5r ica irlba Matrix mclust patchwork plyr psych RANN Rcpp RcppArmadillo RcppEigen RcppProgress rlang Rtsne scattermore uwot]; }; + rlinkedinads = derive2 { name="rlinkedinads"; version="0.1.2"; sha256="0s9ji49rr221vqw0w2hyzhymxfpmbkv3gm7fmlfza96g0xrr6lka"; depends=[cli dplyr httr2 pbapply rappdirs rlang snakecase stringr tidyr urltools]; }; rlist = derive2 { name="rlist"; version="0.4.6.2"; sha256="15q99rhbbjq8zd976yjmfnny45dd5fg2p2dv1sljg2kwi66nbppb"; depends=[data_table jsonlite XML yaml]; }; - rlistings = derive2 { name="rlistings"; version="0.2.4"; sha256="138ad4rz6cqh9m04kmv9vmr8kjwj7n9kcpnvha6sl7mawgk8y2ks"; depends=[checkmate formatters tibble]; }; + rlistings = derive2 { name="rlistings"; version="0.2.7"; sha256="0fbcj4m40gpavf631mya9yjyvzln0nv2v50s35m17y2kzmqyr25k"; depends=[checkmate formatters tibble]; }; + rllama = derive2 { name="rllama"; version="0.4.3"; sha256="11r1s34z5ys9fwg19fl80qm2zycmb6i9sc1nmmb48ar2327ymx92"; depends=[data_table httr]; }; rlmDataDriven = derive2 { name="rlmDataDriven"; version="0.4.0"; sha256="1fhh2siafpqmvpxi2piccxvvn5n38s5d6as6iyn43rgpsslswc8g"; depends=[MASS tseries]; }; rlme = derive2 { name="rlme"; version="0.5"; sha256="0p26mw4g12l279lh80vqcjs3pvjr759ap2m622490k1i2ralxzif"; depends=[magic MASS mgcv nlme quantreg Rcpp robustbase stringr]; }; rlog = derive2 { name="rlog"; version="0.1.0"; sha256="0g9gjf37gly68drm8a8zcnwxcigm2djsm3angglzwd04mmlkgwpy"; depends=[]; }; @@ -16468,7 +16715,7 @@ in with self; { rmargint = derive2 { name="rmargint"; version="2.0.3"; sha256="1z76wz067jnd8zg343gkmn4ac4zyzxyafpndkhdrrh5h33y2whjs"; depends=[]; }; rmarkdown = derive2 { name="rmarkdown"; version="2.25"; sha256="0m814598vc67sjwk83xh9g17n72618l32dgg7fz8y0gycqk6dr06"; depends=[bslib evaluate fontawesome htmltools jquerylib jsonlite knitr stringr tinytex xfun yaml]; }; rmass2 = derive2 { name="rmass2"; version="0.0.0.2"; sha256="0bbjqna65ldxv3wjidzv89fnsxm939scfsiba4pi54saxa7d9vqc"; depends=[]; }; - rmatio = derive2 { name="rmatio"; version="0.18.0"; sha256="11aaa06rq7pz6ma194bp4j9qy1f8rzl31nk731jmacdf2yvbmn6v"; depends=[Matrix]; }; + rmatio = derive2 { name="rmatio"; version="0.19.0"; sha256="0640h71vbhasbankasxi24069g1la8b69vhz82ds0j52pf7kn2rb"; depends=[Matrix]; }; rmcfs = derive2 { name="rmcfs"; version="1.3.5"; sha256="0rbq2b9fw1x44v7ifxp8qgp4yciinw2sw9mqp4ms5jsxznpi2pi6"; depends=[data_table dplyr ggplot2 gridExtra igraph reshape2 rJava stringi yaml]; }; rmcorr = derive2 { name="rmcorr"; version="0.6.0"; sha256="0p3vqhqyh4lrnlj05bdqxza2dl08nmfadsl0dg67vbr3rjzfh62k"; depends=[psych RColorBrewer]; }; rmdHelpers = derive2 { name="rmdHelpers"; version="1.2"; sha256="1ahzbs8z7wvh1dwbq1kq8wrjrknxi2gck63k70gj0swjvgk0ih5r"; depends=[dplyr knitr]; }; @@ -16479,6 +16726,7 @@ in with self; { rmdpartials = derive2 { name="rmdpartials"; version="0.5.8"; sha256="15dw0pk1hdif839k60swna4li04inf7fzsiq9bxbw2wk5pdkqirn"; depends=[digest knitr rlang]; }; rmdplugr = derive2 { name="rmdplugr"; version="0.4.1"; sha256="16wmrya8wdipqcrh34k4v4iq05aqd0jwf7rg6w1wsvx2i9211xg6"; depends=[bookdown rmarkdown]; }; rmdwc = derive2 { name="rmdwc"; version="0.3.0"; sha256="0s7k54ggf0zdkkjg8k5jz2kfjpw99i59k82xqgvj7qaxvakm7vss"; depends=[knitr rstudioapi]; }; + rmerec = derive2 { name="rmerec"; version="0.1.0"; sha256="0kwxddr4ca5i2kvrrnxk41gnjl8qac20afhgagyfv2yrcs08mma4"; depends=[]; }; rmeta = derive2 { name="rmeta"; version="3.0"; sha256="0vkbnxp579v8zmcv1isdbzj5swpr6fq17zwparxcvzswjc2x9ydr"; depends=[]; }; rmetalog = derive2 { name="rmetalog"; version="1.0.3"; sha256="1naqhv81gdcgl2vi2sa3nb006mn8dxc0rdc49v321a5b10bybzvr"; depends=[ggplot2 lpSolve]; }; rmfanova = derive2 { name="rmfanova"; version="0.1.0"; sha256="1wm849b2s1s691ln9vycww0ai5002y7y92a2vkrg7g50rgqg21qa"; depends=[doParallel foreach MASS refund]; }; @@ -16490,7 +16738,7 @@ in with self; { rmio = derive2 { name="rmio"; version="0.4.0"; sha256="1gkd8nkqyfpkp6nvqb7c698difak5ymih3vy6njzqd3gwdp09mhy"; depends=[bigassertr ff]; }; rmonad = derive2 { name="rmonad"; version="0.7.0"; sha256="1vjx8kk57xk7c2a05c6kn75n17842ya7j41hqj3wmgq8yvaxrngx"; depends=[digest glue igraph magrittr pryr]; }; rmoo = derive2 { name="rmoo"; version="0.2.0"; sha256="180dz1b92iswfflbciss13qn730f3nx4km194wn7vci9xghsw1mf"; depends=[GA ggplot2 plotly]; }; - rmp = derive2 { name="rmp"; version="2.1"; sha256="1y1w7grra1a5r3marm6h1xn2rk5jncanpszgn01risll9npkmzb6"; depends=[]; }; + rmp = derive2 { name="rmp"; version="2.2"; sha256="1993195mdaa0dp7hf4d1bmfxjzx061r71ccmpqdqcr8b54ps8lxw"; depends=[]; }; rmpw = derive2 { name="rmpw"; version="0.0.4"; sha256="1a49rvdwvmccv4gfir48fw0b9jyrpc2q9zfyk5j9b7nxsx6x7abl"; depends=[gtools MASS]; }; rms = derive2 { name="rms"; version="6.7-1"; sha256="199xb98zxsbd8wa9g33bgrvbcpq79glnfmq060ic8f9vjw96r0qz"; depends=[cluster colorspace digest ggplot2 Hmisc htmlTable htmltools knitr MASS multcomp nlme polspline quantreg rpart SparseM survival]; }; rmsb = derive2 { name="rmsb"; version="1.0-0"; sha256="0wzwrv9dzg228gzg39k1lfqxxmv502v4x8xhppq5ifi6zg9sp8sh"; depends=[BH cluster digest ggplot2 Hmisc knitr loo MASS Rcpp RcppEigen RcppParallel rms rstan StanHeaders survival]; }; @@ -16498,13 +16746,13 @@ in with self; { rmsfuns = derive2 { name="rmsfuns"; version="1.0.0.1"; sha256="18bpj7xh3kc7pl6ivi3cripam26bsaf9r9099cjf22qndvy18hb6"; depends=[dplyr magrittr PerformanceAnalytics purrr readr tbl2xts xts zoo]; }; rmstcompsens = derive2 { name="rmstcompsens"; version="0.1.5"; sha256="1bjwf4s5mgl60i3psdzga0nmngnx2a90j2kpf6zysd2939rirv1n"; depends=[dplyr survival]; }; rmt = derive2 { name="rmt"; version="1.0"; sha256="165cqnwqr0dx7b8dgq7xlfk4j55p9l6dr5b2rzyvfy5l23k4kckn"; depends=[]; }; - rmumps = derive2 { name="rmumps"; version="5.2.1-23"; sha256="1mypmf9j9fzaldpv56bqng5yhyxfc55hvzd98d1dk6w1m1sncn09"; depends=[Rcpp]; }; + rmumps = derive2 { name="rmumps"; version="5.2.1-26"; sha256="16ii9yg20xkxhsqszay42s4cr29k74av5d9d1d28kmpw6cjh2r2c"; depends=[Rcpp]; }; rmutil = derive2 { name="rmutil"; version="1.1.10"; sha256="1yd5gkg4jg3rvqrfl8c5r07lcr37n1p9h1a7b6s45iswd77dg7w1"; depends=[]; }; - rmweather = derive2 { name="rmweather"; version="0.2.4"; sha256="18ajzwm0jb6wklrxp8cmifym4wn22y2rw4llhjxrc98fkis3jgk3"; depends=[dplyr ggplot2 lubridate magrittr pdp purrr ranger stringr strucchange tibble tidyr viridis]; }; + rmweather = derive2 { name="rmweather"; version="0.2.5"; sha256="0d76k80b7y3ay2njmanz45qvs5rj8mx076lln89bmi22fzwjarhj"; depends=[cli dplyr ggplot2 lubridate magrittr pdp purrr ranger stringr strucchange tibble tidyr viridis]; }; rmytarget = derive2 { name="rmytarget"; version="2.4.0"; sha256="1csl5b76r706gzvzhqgg4pdznbdl4i3b0srazwa7xdfc6zbrzljp"; depends=[dplyr httr lubridate purrr stringr tidyr]; }; rmzqc = derive2 { name="rmzqc"; version="0.5.3"; sha256="0w740vx4f7sbj105ybv1rvfywlbpkfr7jdkvb6j09amzxr1bg9mg"; depends=[jsonlite jsonvalidate knitr ontologyIndex R6 R6P rmarkdown testthat]; }; rnassqs = derive2 { name="rnassqs"; version="0.6.1"; sha256="00daka4pgvmipqq3151jj35fsicpfc06mnim8mm5jx5cyqcvilf7"; depends=[httr jsonlite]; }; - rnaturalearth = derive2 { name="rnaturalearth"; version="0.3.4"; sha256="1lqgv2v72jgp3xrxdwh0x644jwd2ixqjqja32r3sj9dfwnpx6b65"; depends=[httr jsonlite sf sp terra]; }; + rnaturalearth = derive2 { name="rnaturalearth"; version="1.0.1"; sha256="1vfkn4bf77mr2n7dhmnl55ma4cvwy2nazhizmdqd98w2ydl13z3p"; depends=[httr jsonlite sf terra]; }; rnaturalearthdata = derive2 { name="rnaturalearthdata"; version="0.1.0"; sha256="1z32j5lz2lb8xgpkr73majw22k0b49iazj6jjc7j4w9k4zxxa102"; depends=[sp]; }; rnbp = derive2 { name="rnbp"; version="0.2.1"; sha256="0vphfxb262jryvvs48l21q3vxqicj51az0li38axg1mslshw0y4g"; depends=[curl httr jsonlite]; }; rncl = derive2 { name="rncl"; version="0.8.7"; sha256="0flrqz7pansy11ds23qv06bcmh6vxqljq0517v6292ibbx7nx1qx"; depends=[progress Rcpp]; }; @@ -16515,6 +16763,7 @@ in with self; { rngtools = derive2 { name="rngtools"; version="1.5.2"; sha256="0kd7x214cqw7hzpmk1iqy1bn7j6x0ady0yz2hsdbclbq9k57d33z"; depends=[digest]; }; rnmamod = derive2 { name="rnmamod"; version="0.3.0"; sha256="1cb6f5s0m7cciwyy8pd16qf4615k2vh58lgx5mdp9mpybwnvwapx"; depends=[dplyr fdrtool gemtc ggfittext ggplot2 ggpubr ggrepel knitr MASS mcmcplots netmeta pcnetmeta R2jags reshape2 scales writexl]; }; rnn = derive2 { name="rnn"; version="1.9.0"; sha256="12js613gmmcpniq5adbmb3anqsza67m0jxk69486jv3am2vyqi5p"; depends=[attention sigmoid]; }; + rnndescent = derive2 { name="rnndescent"; version="0.1.3"; sha256="0wdcw99bmfxxd06ddqgsww8dxmvi516kh1cpm27vg9m3zhw2d51k"; depends=[BH dqrng Matrix Rcpp sitmo]; }; rnoaa = derive2 { name="rnoaa"; version="1.4.0"; sha256="15rhnvzzfdxc37j4yixp21hw5p9ijg7c0la4cyrxj57wnc1r71m1"; depends=[crul data_table dplyr geonames ggplot2 gridExtra hoardr isdparser jsonlite lubridate scales tibble tidyr tidyselect XML xml2]; }; rnpn = derive2 { name="rnpn"; version="1.2.6"; sha256="00bj78zmfwvgl8byr92n0mbzwvgn2a5k16y55n7dcrsnh8xhnir4"; depends=[curl data_table httr jsonlite magrittr plyr raster sp tibble XML]; }; rnr = derive2 { name="rnr"; version="0.2.1"; sha256="1z9bab3qmq8d79bcvjzldbxlah2w8mqp2ifd0cn1348dafwa0dhi"; depends=[assertthat purrr]; }; @@ -16530,7 +16779,7 @@ in with self; { robcp = derive2 { name="robcp"; version="0.3.7"; sha256="0v5sb8q7knzs8qb4a8cmnm6n9x52xffcjhcgirlqmgm3ix1cl3mb"; depends=[Rcpp]; }; roben = derive2 { name="roben"; version="0.1.0"; sha256="18k0h1y2xhvdssg28b9s4whn3kcbdgkz55dp1y3rrczw8xrm54mm"; depends=[glmnet Rcpp RcppArmadillo]; }; robeth = derive2 { name="robeth"; version="2.7-8"; sha256="0f5j9vc1d5nzisqa54ws3l7gn3ccnxg70ybl4fnawi531ih3rw60"; depends=[]; }; - robfilter = derive2 { name="robfilter"; version="4.1.3"; sha256="1r56p25c0624dxbd9lh8vbdqp69m0fzcfbzdx1kg4v0c25106ysw"; depends=[lattice MASS robustbase]; }; + robfilter = derive2 { name="robfilter"; version="4.1.4"; sha256="10wrfd2ii99vscnajjrd48msn4ka75pn7h9yhgclilc9l9r0q1wn"; depends=[lattice MASS robustbase]; }; robflreg = derive2 { name="robflreg"; version="1.1"; sha256="03vz43phq805am0d38lyqfn969dl3fqnfivb9l46k9vbcqmdsx1y"; depends=[expm fda fda_usc fields goffda MASS mvtnorm pcaPP robustbase]; }; robin = derive2 { name="robin"; version="1.1.1"; sha256="1mvv2snvfizwxc743m8kxm3amwgb31079wjc6dlbgdah9f7fja7n"; depends=[DescTools fdatest ggplot2 gridExtra igraph Matrix networkD3 qpdf spam]; }; robis = derive2 { name="robis"; version="2.11.3"; sha256="04yz7i7mfc1jb2qbmm7yy0m6y7jnzck73m9d7hjjj6pc4ljf4cax"; depends=[curl data_table dplyr ggplot2 glue httpcache httr jsonlite leaflet mapedit memoise purrr rlang sf stringr tibble tidyr tidyselect xml2]; }; @@ -16538,7 +16787,7 @@ in with self; { robmedExtra = derive2 { name="robmedExtra"; version="0.1.0"; sha256="12ld19f7hc7xdslyd3z75h54lqg3p5saliz4pgk3m7rj3m3i24if"; depends=[DT flextable ggplot2 officer robmed shiny]; }; robmixglm = derive2 { name="robmixglm"; version="1.2-3"; sha256="18xcbxj3jl9w5i74vy5i2ha7zsln4sgh8anv9n7haa7zilflvrx3"; depends=[actuar bbmle boot doParallel doRNG fastGHQuad foreach MASS numDeriv Rcpp VGAM]; }; robnptests = derive2 { name="robnptests"; version="1.1.0"; sha256="0pc6g2apdcdrhpja6g922z03q92lcdydq9x85ii1slqpvla493k3"; depends=[checkmate gtools Rdpack robustbase statmod]; }; - roboBayes = derive2 { name="roboBayes"; version="1.1"; sha256="1aap13b6b026sfmfp0zk5xbr4a65ifjxq67yb7qswan669i6jn0i"; depends=[Rcpp RcppArmadillo RcppDist]; }; + roboBayes = derive2 { name="roboBayes"; version="1.2"; sha256="0hk415j98aikl3n3ylr2fjadjd0k40zxk3627c6zg6zs9di6dqmg"; depends=[Rcpp RcppArmadillo RcppDist]; }; robomit = derive2 { name="robomit"; version="1.0.6"; sha256="1yma6m4bxy3hikc9kx7mslqgq1fpi4my7qij9pz77ag836r9hcxm"; depends=[broom dplyr ggplot2 plm tibble tidyr]; }; robotoolbox = derive2 { name="robotoolbox"; version="1.3.2"; sha256="0aj7819za3abw40rflvpwndf8i8gpmqmzb691km7shy9xq4sq48s"; depends=[cli crul data_table dm dplyr glue labelled purrr RcppSimdJson readr rlang stringi tibble tidyr tidyselect]; }; robotstxt = derive2 { name="robotstxt"; version="0.7.13"; sha256="1x5sachf7g5c2aj1mg3z2lf60723k1ad80bdr89szkgi92jkfal7"; depends=[future future_apply httr magrittr spiderbar stringr]; }; @@ -16550,20 +16799,20 @@ in with self; { robsurvey = derive2 { name="robsurvey"; version="0.5-2"; sha256="140n1liq9bniy782j85a7r5f492wiyl0qhf5shpks6fyipcjjx9r"; depends=[KernSmooth survey]; }; robumeta = derive2 { name="robumeta"; version="2.1"; sha256="1lybq36p1n1z9p0iqiyzwmv5f07q1wlkqfgrnx9kjf6pwlp9mkyk"; depends=[]; }; robusTest = derive2 { name="robusTest"; version="1.0.1"; sha256="0rgm0cl47c8ddhbl0da3jdrkxhgy3jqlabmi4fqkc80zcmaldmhi"; depends=[Rcpp]; }; - robust = derive2 { name="robust"; version="0.7-2"; sha256="1kryflq2p0c78pggnj5yghjivy4npxfkzcqhxh9jvrngkpxhsrb6"; depends=[fit_models lattice MASS robustbase rrcov]; }; + robust = derive2 { name="robust"; version="0.7-3"; sha256="0pj7qinp11rjsibixl7axvxp9alaqr4pjr1l52vq8cl8h6j159w9"; depends=[fit_models lattice MASS robustbase rrcov]; }; robust2sls = derive2 { name="robust2sls"; version="0.2.2"; sha256="1q12lvb5kifcn6qjaw1zpzq8p59lw92x79jfj9ffgy3sswhznpq4"; depends=[exactci foreach ivreg MASS mathjaxr pracma]; }; robustBLME = derive2 { name="robustBLME"; version="0.1.3"; sha256="18wx116l1riy4wn4083kxl637mkyyi9wbwnmvhkgqw3vb36s4vxd"; depends=[doParallel foreach iterators lme4 mvtnorm numDeriv Rcpp RcppArmadillo]; }; robustDA = derive2 { name="robustDA"; version="1.2"; sha256="0kxdqvv17dgnlqp0hkazwfqsg3h4g9gw1w57blwpay67xp4d1jyx"; depends=[MASS mclust Rsolnp]; }; robustETM = derive2 { name="robustETM"; version="1.0"; sha256="1dlj79v08bls500lb81rya6vwx58h97rpq1sy9zwd3mfl9b6awp9"; depends=[]; }; robustHD = derive2 { name="robustHD"; version="0.8.0"; sha256="16ihvb2v4i3ld3hx4vjkqc4fs07hnp8zi35pijcayxpp09bfk6s3"; depends=[ggplot2 MASS perry Rcpp RcppArmadillo robustbase]; }; robustX = derive2 { name="robustX"; version="1.2-7"; sha256="0wy0fv7v03lsvzjhg5m6g331lhqsd8f1adgjw0r6bwdkkak2l2gl"; depends=[robustbase]; }; - robustbase = derive2 { name="robustbase"; version="0.99-0"; sha256="0xshwfv6vq47857xfhwnlxcl1511ghn6pyjylrg39i19xhp44za3"; depends=[DEoptimR]; }; + robustbase = derive2 { name="robustbase"; version="0.99-1"; sha256="0n3qxw633hk391mr07pd7c9572v3zgdffvmaq4q2w5q4x3n1n6mf"; depends=[DEoptimR]; }; robustbetareg = derive2 { name="robustbetareg"; version="0.3.0"; sha256="09f4binbi5gcf80fhpxzrmpm2k2xf6f7rcw9g2xzmni8b4cs2l6p"; depends=[BBmisc betareg crayon Formula MASS Matrix miscTools numDeriv pracma Rmpfr robustbase rstudioapi zoo]; }; robustcov = derive2 { name="robustcov"; version="0.1"; sha256="1bgvf9h727aqfb11q976y2ybp3mpghkyd29waypyfp95csp3cf26"; depends=[caret glasso Rcpp RcppArmadillo]; }; robustfa = derive2 { name="robustfa"; version="1.1-0"; sha256="0r7ydyjg0ch1wqngzdar2bd6jh0fvfzylmxmxq97kq1k6p3gb972"; depends=[rrcov]; }; robustlm = derive2 { name="robustlm"; version="0.1.0"; sha256="17l2kr9dc3z02b2jswfxal13md4xfpz4sqjfg6kyg6ilab1cfd06"; depends=[MASS matrixStats]; }; - robustlmm = derive2 { name="robustlmm"; version="3.2-3"; sha256="1jk4gf1066xsnnx1zsi2fz8bai3dkmyrm2dfdslrpasnmn6661d4"; depends=[fastGHQuad lattice lme4 Matrix nlme Rcpp rlang robustbase xtable]; }; - robustmeta = derive2 { name="robustmeta"; version="1.1-1"; sha256="0f7qj3c01wxhcx86hwjr2gik041vjvnzg444kyn72v7b7fr3nlyz"; depends=[metafor]; }; + robustlmm = derive2 { name="robustlmm"; version="3.3-1"; sha256="1rv08rxv0s2013hq196p4rnh3hh5gvcv8jw14sbh9lm1hzkj67rg"; depends=[fastGHQuad lattice lme4 Matrix nlme Rcpp rlang robustbase xtable]; }; + robustmeta = derive2 { name="robustmeta"; version="1.2-1"; sha256="0i1i2pxsppyppayr911q87ll2nrmsvc8avkf4mlxm472k5dffh3k"; depends=[metafor]; }; robustrank = derive2 { name="robustrank"; version="2019.9-10"; sha256="1xikknrmnh95wpvyljdl7v510ddi1g7a88aw3l630s789nq5i02h"; depends=[kyotil]; }; robustrao = derive2 { name="robustrao"; version="1.0-5"; sha256="1r8v9qjx70s8swh09imq9kzdxg0qhnmk00zrg939mig9b12mw1p6"; depends=[doParallel foreach gmp igraph iterpc quadprog]; }; robustreg = derive2 { name="robustreg"; version="0.1-11"; sha256="08c6dyzki68hzl006s12bkjiirlw2n2isirjh8b79sd6zjrjlh72"; depends=[Matrix Rcpp RcppArmadillo]; }; @@ -16573,7 +16822,7 @@ in with self; { robvis = derive2 { name="robvis"; version="0.3.0"; sha256="0xzvx3230ydd082jmdlm70vyhjizknngfzhvcbqpdcm403klni5h"; depends=[ggplot2 scales tidyr]; }; rocNIT = derive2 { name="rocNIT"; version="1.0"; sha256="18vxyh1wcq6dv62xf2dyl4226cd00n4hlbaqnynl9j5gnrmmsvi1"; depends=[]; }; rocTree = derive2 { name="rocTree"; version="1.1.1"; sha256="1hd5v47gymffg5829swpd38xscm4vq75d46fibwkrr7jp9iy37ra"; depends=[data_tree DiagrammeR flexsurv ggplot2 MASS Rcpp RcppArmadillo survival]; }; - rocbc = derive2 { name="rocbc"; version="1.1.0"; sha256="08vj9nq4yysz32hwyqhs6miqznf4w5zi2isd2p4a12bccjzn6df4"; depends=[clinfun formattable mvtnorm pracma splancs]; }; + rocbc = derive2 { name="rocbc"; version="2.0.0"; sha256="18p7ydnaayia072dhpxlb184ib4rv0zmm8zymcry76znny2milm6"; depends=[clinfun formattable mvtnorm pracma splancs]; }; rocc = derive2 { name="rocc"; version="1.3"; sha256="1j15l28c7kv7x850ycjprqi5gpbsl6wfv97h9lbrx11q5l4r9ivb"; depends=[ROCR]; }; roccv = derive2 { name="roccv"; version="1.2"; sha256="18kq2gzcbz97dw168xppql8k3slpkfl8yv1d8ac48damlhvipif1"; depends=[glmnet pROC]; }; rock = derive2 { name="rock"; version="0.6.7"; sha256="0ms21446jd6imrb9j9ncy7p94gqxi408wgp7b0l8g1h5f027qfsc"; depends=[data_tree DiagrammeR DiagrammeRsvg dplyr ggplot2 glue htmltools markdown purrr yaml yum]; }; @@ -16585,14 +16834,14 @@ in with self; { rococo = derive2 { name="rococo"; version="1.1.7"; sha256="1fp3kk5j9kc0vyr50rlbsxjc9p3qz5137sifxsbd297p7zj1fcs2"; depends=[Rcpp]; }; rocsvm_path = derive2 { name="rocsvm.path"; version="0.1.0"; sha256="1pd59bzcz96sxpp725pqa7pjh2gdrfapbilp4wccjkf5290zw56v"; depends=[quadprog svmpath]; }; rodd = derive2 { name="rodd"; version="0.2-1"; sha256="01zrkw4lr21vxk2grfc37iyrcipfdcj5m0i7gnxsvs435y9fqagd"; depends=[Matrix matrixcalc numDeriv quadprog rootSolve]; }; - rodeo = derive2 { name="rodeo"; version="0.7.7"; sha256="1cfsf6sld72bm1343p6fzpfwq7a976basf3fg5fqsj2rcx6b1q7b"; depends=[deSolve R6]; }; + rodeo = derive2 { name="rodeo"; version="0.7.8"; sha256="0sqds225bvnw1z6a36f14fck0jnaa0ilz2n8ylkw6j5f7dx1yf0n"; depends=[deSolve R6]; }; rofanova = derive2 { name="rofanova"; version="1.0.0"; sha256="0w8c5c5q0s2qv1b4nxgf8y1z3g0l9c6jr6i0280b5mp9in9wn8a6"; depends=[abind fda_usc Rcpp RcppArmadillo robustbase]; }; - roger = derive2 { name="roger"; version="1.5-0"; sha256="1b19wkxiw447w16239ssxv52xlxi923mhy5fnwh0v11v2nqnp9ni"; depends=[]; }; - rolap = derive2 { name="rolap"; version="2.3.0"; sha256="0n45zp3ni593qssyaxvpj2wijh6bd0naqkpj1x2fabjibka346y9"; depends=[dm dplyr purrr readr rlang snakecase tibble tidyr tidyselect]; }; + roger = derive2 { name="roger"; version="1.5-1"; sha256="1k00xbc0iprcfjx6lgg5y910y76is8f984mcp4g6711zi16ljf5j"; depends=[]; }; + rolap = derive2 { name="rolap"; version="2.5.0"; sha256="1iciwf5yb8llga8l59spfzvir4akkw8a17vdmrsc1gjbkcchvnl1"; depends=[dm dplyr purrr readr rlang sf snakecase tibble tidyr tidyselect xlsx]; }; roll = derive2 { name="roll"; version="1.1.6"; sha256="1crzr0kqdls08n6i3769zrxbxvh2m4hv5k3xi6ky6ps8hhicwqc9"; depends=[Rcpp RcppArmadillo RcppParallel]; }; rollbar = derive2 { name="rollbar"; version="0.1.0"; sha256="1q2ym0vkgbdnibxmwx0bp9c20g3bm8fzwwgs3j4bxg1ydg3gnkj4"; depends=[httr]; }; rolldown = derive2 { name="rolldown"; version="0.1"; sha256="1awr8lcxz7y9mjhia4p85jvixc72gj525gk2jjl13njgq6shp0b5"; depends=[bookdown htmltools jsonlite]; }; - rollinglda = derive2 { name="rollinglda"; version="0.1.2"; sha256="09809fs1lykwhird1sl832fbqa9p7850apj7rmb740rxaa27p6wv"; depends=[checkmate data_table ldaPrototype lubridate tosca]; }; + rollinglda = derive2 { name="rollinglda"; version="0.1.3"; sha256="0xnj7p1b737308syqrgjcavjppb11rv8hrmyld31xwvnzkfarw01"; depends=[checkmate data_table ldaPrototype lubridate tosca]; }; rollmatch = derive2 { name="rollmatch"; version="2.0.2"; sha256="1bm1yc2z9byj4m9gz0il47y8drd3qzsb5lwb22a22axy306lqfqj"; depends=[dplyr magrittr]; }; roloc = derive2 { name="roloc"; version="0.1-1"; sha256="0xynj12gp010c23f6ll9p343vwgxwa22s771p1w2pi65cj2ixhas"; depends=[colorspace]; }; rolocISCCNBS = derive2 { name="rolocISCCNBS"; version="0.1"; sha256="100jh5m2c1zp5wg3wd4y2i47dzx1j0g6lfwyqmwk4bz99yzzz5am"; depends=[colorspace roloc]; }; @@ -16616,16 +16865,18 @@ in with self; { rosetta = derive2 { name="rosetta"; version="0.3.12"; sha256="0x0hdfhrldc2k72498wzvkxwyj3rk5sxi1xabn66kwswhqgbc564"; depends=[car ggplot2 ggrepel gridExtra kableExtra knitr lavaan lme4 lmerTest multcompView pander plyr psych pwr rmdpartials sjstats ufs]; }; rosetteApi = derive2 { name="rosetteApi"; version="1.14.4"; sha256="166p3dvib0xpvhkb92b3imassv1b9mrblz2m05jai2nzlz0q7hzk"; depends=[httr jsonlite]; }; rosm = derive2 { name="rosm"; version="0.3.0"; sha256="022f564d0qh3rivp6sxak4amib7c17m383vlfvac0vi0y4x49hf3"; depends=[curl glue jpeg png progress rlang wk]; }; + rosmium = derive2 { name="rosmium"; version="0.1.0"; sha256="04ygbjvcp3gz61ac8r5d10jn1ivmwyrrya1lix4cj0g4hwxv6ipz"; depends=[checkmate geojsonsf processx sf]; }; rospca = derive2 { name="rospca"; version="1.0.4"; sha256="1pxm34xsc2610n0i6dwcm4rhn016yqb03f8vrm93r7285c04n4q7"; depends=[elasticnet mrfDepth mvtnorm pcaPP pracma robustbase rrcov rrcovHD]; }; + rosv = derive2 { name="rosv"; version="0.5.1"; sha256="1xgmn2n9iryijp36a7vzyaylc21wmfv2gjqn0qwa57hwy30f1wbw"; depends=[digest furrr httr2 jsonlite memoise purrr R6]; }; rotasym = derive2 { name="rotasym"; version="1.1.5"; sha256="04vmxfj7jwd6h1d5ns4hq8xbc4sm008vsyiw5jlp212a4fdrplaj"; depends=[Rcpp RcppArmadillo]; }; rotationForest = derive2 { name="rotationForest"; version="0.1.3"; sha256="1z2wk3mcs5hrahsxralidbc0dd8gxdbwjpr2f71g4g3isfx1ic8d"; depends=[rpart]; }; - rotations = derive2 { name="rotations"; version="1.6.4"; sha256="19d7filrgwm25cklbpjr082cn0h991xa5lvrijjl59whan4axjkg"; depends=[ggplot2 gridExtra Rcpp RcppArmadillo]; }; + rotations = derive2 { name="rotations"; version="1.6.5"; sha256="1gcwz9aq99w54pq03i164kqa0dnf68rkd3ch3l7m97ndf32lawwk"; depends=[ggplot2 gridExtra Rcpp RcppArmadillo]; }; rotatogram = derive2 { name="rotatogram"; version="0.1.3"; sha256="0y1kw8cjvdbdr9ghs7xb9wgj5g9h3nc0q36vxmz8jzjfh4lib68c"; depends=[ggplot2]; }; rotl = derive2 { name="rotl"; version="3.1.0"; sha256="0p33nm57bdqc2hjh7v7p0a9bh29x7n50bkw49l5d4df8jzwfxfhj"; depends=[ape curl httr jsonlite rentrez rlang rncl]; }; rotor = derive2 { name="rotor"; version="0.3.7"; sha256="02mzcwd94hykysz3cv0q3dlhbbd4k3rm1di7dcw6m4masgzy05zb"; depends=[dint R6]; }; roughnet = derive2 { name="roughnet"; version="1.0.1"; sha256="1brl1zwmmczbismgvbq2m1i1n1v85m410z2ap6r7jqxpfn111kis"; depends=[graphlayouts htmlwidgets igraph jsonlite]; }; roughsf = derive2 { name="roughsf"; version="1.0.0"; sha256="0am4yd168pss53p8869akx4bnw95d3k30fbv17pml8y9iriq6zs5"; depends=[htmlwidgets jsonlite sf]; }; - round = derive2 { name="round"; version="0.21-0"; sha256="1c3hp4lh18q1h0sk0j6vgj659f6hv5bgliypzhra6zxgs8w41953"; depends=[]; }; + round = derive2 { name="round"; version="0.21-0.1"; sha256="1k245bq0wkh2lwiq009nkr5j100xvx0700q82jf1lxsiyvgbip41"; depends=[]; }; roundhouse = derive2 { name="roundhouse"; version="0.0.2"; sha256="0xx2wai9pdq0g7x8xmwlf48wxv4v18c7ymzvzxpvw1gggppmbk69"; depends=[]; }; roundyh = derive2 { name="roundyh"; version="0.1.0"; sha256="06x97gnc06ib0qkygs8fznxx7pm52bpr778x1pypl8frmkj4sa0g"; depends=[]; }; routr = derive2 { name="routr"; version="0.4.1"; sha256="0sqllafwxqlkf8bl5nc3fpf17aqg5nbimrmc8l3z95y3gwhnqhkb"; depends=[assertthat digest R6 reqres stringi uuid]; }; @@ -16637,43 +16888,43 @@ in with self; { rpact = derive2 { name="rpact"; version="3.4.0"; sha256="0x1np14hvgj9h8spy50j8c8kaxi097asf10vs450fz23acpi8zj4"; depends=[knitr Rcpp rlang]; }; rpaleoclim = derive2 { name="rpaleoclim"; version="1.0.1"; sha256="1fqlqs8l18dy5l24hzyj19hdk6yaxmd25g56hg1c6cm677z1xcli"; depends=[curl fs rlang terra]; }; rpanel = derive2 { name="rpanel"; version="1.1-5.2"; sha256="0b9r458dx65p1s0az14s3bhyh5isqx5ax9dblpsxxm6i9jcnx8f9"; depends=[]; }; - rpart = derive2 { name="rpart"; version="4.1.21"; sha256="0av28n5as53qrxm41hcrwv59qdv7gfli668q32z0a5r1bdkiqz77"; depends=[]; }; - rpart_LAD = derive2 { name="rpart.LAD"; version="0.1.2"; sha256="1v1arv5b02n0jvyifb5km9w3z3wxg9x9g3g4xck4s319z5g6lp7n"; depends=[Rcpp rpart]; }; + rpart = derive2 { name="rpart"; version="4.1.23"; sha256="1bxbvbv3jwz1j6yhgswbr6qy574n9rbp3cnwl9badkm6dbnrmf7r"; depends=[]; }; + rpart_LAD = derive2 { name="rpart.LAD"; version="0.1.3"; sha256="0qfhd1gbzv3yikmdd98p9nj8xv6k7qlnlvv85g1ipil1d20f6dlc"; depends=[Rcpp rpart]; }; rpart_plot = derive2 { name="rpart.plot"; version="3.1.1"; sha256="0k826fr6zvx4kbxlxg5347aj3y1qv68s04h9s6b1mwld0m064wrh"; depends=[rpart]; }; rpartScore = derive2 { name="rpartScore"; version="1.0-2"; sha256="0vr93jgb2x3zzzbf0b3bbbb4mc0lvjicqbl5sv6z3wxjsjwl8jsl"; depends=[MASS rpart]; }; rpca = derive2 { name="rpca"; version="0.2.3"; sha256="135q3g8jmn9rwamrc9ss45cnbfyw8kxcbrf0kinw8asz70fihj9z"; depends=[]; }; rpdo = derive2 { name="rpdo"; version="0.3.2"; sha256="0sh52y7hmnm9qhyp0m6vp3c23wzz3ds8j577z105s6f3pdf398l0"; depends=[chk lifecycle]; }; rpf = derive2 { name="rpf"; version="1.0.14"; sha256="15pp6fdqxngsmcibxfzv72g25q3ww3hrazsl4c5fgi0fh450kfz4"; depends=[lifecycle mvtnorm Rcpp RcppEigen]; }; - rphylopic = derive2 { name="rphylopic"; version="1.2.1"; sha256="0b33ixhlwh3lkm01sh5isrirj5dlff04szdb2hmjyipgmfa0w1k4"; depends=[curl ggplot2 grImport2 httr jsonlite knitr lifecycle pbapply png rsvg]; }; + rphylopic = derive2 { name="rphylopic"; version="1.3.0"; sha256="1v6fz6kl9y92g714mjlwc36jajd1fismjsbx8y95sfz6l065kvma"; depends=[curl ggplot2 grImport2 httr jsonlite knitr lifecycle pbapply png rsvg]; }; rpinterest = derive2 { name="rpinterest"; version="0.3.1"; sha256="0kkf73byhgzqxw85wda3nh7qsq81pc035vi6z3fhnvb9ssszwakc"; depends=[httr magrittr rjson]; }; rpivotTable = derive2 { name="rpivotTable"; version="0.3.0"; sha256="0ndhsw4nnz6wf0v8dh4sz8867m01jjkzw6aq7f490z1ypa3d9fv5"; depends=[htmlwidgets]; }; rplotengine = derive2 { name="rplotengine"; version="1.0-9"; sha256="0bmxn578z1arjical1xhzy7ib32ys7p8wkmrjw1b66islwi4b79k"; depends=[xtable]; }; rpls = derive2 { name="rpls"; version="0.6.0"; sha256="0r3y63pi4d7hfzs53d9w23ymmk86gvm85v0dx7n1gicha5nn1mk8"; depends=[pcaPP robustbase]; }; - rplum = derive2 { name="rplum"; version="0.3.0"; sha256="1rqyv367hy8b66dnqk0v9hd1bib0mbf1wvw7fskccs5l7ldbkyki"; depends=[rbacon rintcal]; }; + rplum = derive2 { name="rplum"; version="0.4.0"; sha256="0fwzfbbg5dv0rg0w8xijn9zjrp5gclzrf8m2m8nla61dzbpn2jsx"; depends=[rbacon rintcal]; }; rpm = derive2 { name="rpm"; version="0.7-1"; sha256="0kr1hzhfx1kxrrszvvk6xwfy2vpp1vqn75xi3l70m275ay8kip6p"; depends=[abind coda doFuture doRNG dplyr foreach future ggplot2 MASS matrixStats nloptr Rcpp RcppArmadillo]; }; rpmodel = derive2 { name="rpmodel"; version="1.2.0"; sha256="131kzag51r1fpa63xzj77b9hh4b1723lc424ch8dhbrcdrnjh730"; depends=[]; }; rpms = derive2 { name="rpms"; version="0.5.1"; sha256="1y686da4ylv403gbfx43yaa2i2zdcgdv9p1zmlq05dvbkjkvlvw9"; depends=[Rcpp RcppArmadillo]; }; rpnf = derive2 { name="rpnf"; version="1.0.5"; sha256="07byg0ym4d2cr6fp74z379jhsaw4c0xrwf622dvhwa4frn4anl60"; depends=[]; }; rportfolio = derive2 { name="rportfolio"; version="0.0.3"; sha256="1pj08qz1qmdcyxp629lyfggbgzr36wrjir0fj6hpgf5zm588bqiy"; depends=[xts zoo]; }; - rpostgis = derive2 { name="rpostgis"; version="1.5.0"; sha256="1m7xhib3nbngqa2vnygnyp5m502wn3r3yyfp08grsz8xi8ipbcgz"; depends=[DBI purrr raster RPostgreSQL sf sp terra]; }; + rpostgis = derive2 { name="rpostgis"; version="1.5.1"; sha256="1fnizm0xb7div6mrg3s9a4mv8dbm6lrq9azjxi786261jmv3dbvg"; depends=[DBI purrr raster RPostgreSQL sf sp terra]; }; rpql = derive2 { name="rpql"; version="0.8.1"; sha256="065mkdfrhs7jmkwyvkydic04snih1wb18xshddll1r5kam4ixvn2"; depends=[gamlss_dist lme4 MASS Matrix mvtnorm Rcpp RcppArmadillo]; }; rpredictit = derive2 { name="rpredictit"; version="0.1.0"; sha256="0azq75fhjadchc4pxgs4pccpvskc508zhggxxb7ab012nysap027"; depends=[dplyr DT dygraphs httr jsonlite magrittr quantmod shiny xts]; }; rprev = derive2 { name="rprev"; version="1.0.5"; sha256="0494z0049rxahs4ndjlclzfc65k304a1m01cdlhjg4rz1gc1vrr8"; depends=[data_table dplyr ggplot2 lazyeval lubridate magrittr survival tidyr]; }; rprime = derive2 { name="rprime"; version="0.1.2"; sha256="1h54vclc800pir3vxqcq4cmmxy9fcar1fydqmba2dzpj8dvlad7v"; depends=[assertthat plyr stringi stringr]; }; rprintf = derive2 { name="rprintf"; version="0.2.1"; sha256="0rwqpln0igxb4m6d6jyp7h3shfb8sbp0kj7cgkffjp88hn9qm4h3"; depends=[stringi]; }; - rprofile = derive2 { name="rprofile"; version="0.2.0"; sha256="0j8xyi01095x9vmk98x97qzsm5zgkpp1if0p4k80qp6cvh1ycy1g"; depends=[]; }; - rprojroot = derive2 { name="rprojroot"; version="2.0.3"; sha256="15zq606s544wmbvk5dw13xq0sspr9dsxyxlvzvn0r48f8x3l4q2h"; depends=[]; }; + rprofile = derive2 { name="rprofile"; version="0.4.0"; sha256="0vikr77qk6y1ci1k2l843prlmndk61rvbbw9gv40lzwr9q5pdivb"; depends=[]; }; + rprojroot = derive2 { name="rprojroot"; version="2.0.4"; sha256="16bf6ga5fgm83j3m67plw5i54az2vdbvw5m99ixaqkd24pxn7x5m"; depends=[]; }; rprojtree = derive2 { name="rprojtree"; version="1.0.0"; sha256="0414srpgx2jgf8jaznpin131hiih17avx45vggf812b3xcicm11b"; depends=[dplyr jsonlite magrittr rjson]; }; - rpsftm = derive2 { name="rpsftm"; version="1.2.7"; sha256="0ncf9ci39pd7p048cgvhl6phhk975xwyjm4aqs1b4hjy1nml4iz2"; depends=[ggplot2 survival]; }; + rpsftm = derive2 { name="rpsftm"; version="1.2.8"; sha256="0smwr4cm6vpl90k3s4j9k4bpqc69n4mxcqypr4hav1pdg74rknkh"; depends=[ggplot2 survival]; }; rptR = derive2 { name="rptR"; version="0.9.22"; sha256="0vvjc6qiq71d5wckl77z606q1fp43mgrfzp1bxcab96n5whb2r9k"; depends=[lme4 pbapply]; }; - rpyANTs = derive2 { name="rpyANTs"; version="0.0.2"; sha256="12m5vrvlrlwmxh26xqpzrs5ghl2rjqikvnjglr40ys9jyy9vxj24"; depends=[reticulate rpymat]; }; + rpyANTs = derive2 { name="rpyANTs"; version="0.0.3"; sha256="1dmlpwx9x1gh2x0a4krp0v5a4km7pp65zalvbibb6r69iqmqr858"; depends=[reticulate RNifti rpymat]; }; rpymat = derive2 { name="rpymat"; version="0.1.7"; sha256="0zrq4j0xw4blv9bsdrnkf0wb61bsm1lrlh92a2qw8p3daa48833q"; depends=[fastmap glue IRkernel jsonlite rappdirs reticulate rstudioapi]; }; rqPen = derive2 { name="rqPen"; version="3.2.1"; sha256="0548mwir8lpp4sw1dk62pja45d92mf0i1prz2r7gxwqmm3fwcphh"; depends=[data_table hqreg hrqglas lifecycle plyr quantreg Rdpack]; }; rqdatatable = derive2 { name="rqdatatable"; version="1.3.3"; sha256="08bjhfay2n58zsa19r81b8884zahdxi1rylhs4a241sqc0zmns23"; depends=[data_table rquery wrapr]; }; rquery = derive2 { name="rquery"; version="1.4.99"; sha256="0540xw33wxk4w73s234pc0ss6vffzdkz7wqlca67im9h4sph19y3"; depends=[wrapr]; }; rr = derive2 { name="rr"; version="1.4.1"; sha256="0l5ndcpnd3ib83vwh5bs83nvjr4in3v2kbqq8q4y9x90nrxaz901"; depends=[arm coda magic MASS]; }; rr2 = derive2 { name="rr2"; version="1.1.1"; sha256="0c80zl8qyfd4fdvxp381vixfr8q2dxzn2j7siqawf0dbbvxpdr73"; depends=[ape lme4 Matrix nlme phylolm phyr]; }; - rrBLUP = derive2 { name="rrBLUP"; version="4.6.2"; sha256="1zxd8nvnrzc2akiaigjp6myyq8lkcyi46rrqgxrvd4wmi0zmw3w6"; depends=[]; }; + rrBLUP = derive2 { name="rrBLUP"; version="4.6.3"; sha256="1kc01hznr5hq5hwwz48hlpj4sbmnim9rn609zm9g6ll2rdz2aand"; depends=[]; }; rrMixture = derive2 { name="rrMixture"; version="0.1-2"; sha256="0bh63v9zis8w3ylvbc99iy2hx0wn6302d49bhcw3wr7wmbzvdi8s"; depends=[gtools MASS Matrix matrixcalc Rcpp RcppArmadillo]; }; rrandvec = derive2 { name="rrandvec"; version="1.0.0"; sha256="0n92wm95xjng2j93a055mliph2cmialmcpm9b45jf75zqdhzizp5"; depends=[checkmate Rcpp]; }; rrapply = derive2 { name="rrapply"; version="1.2.6"; sha256="05shia32hs6y739dfk35y671c8nrifhb415mn3sdg4v065j2k1jc"; depends=[]; }; @@ -16695,13 +16946,13 @@ in with self; { rrr = derive2 { name="rrr"; version="1.0.0"; sha256="0sv6k70mv325yjm8yjy4dw8cqc0xc071iiv94fk1l1yfz0n67prz"; depends=[dplyr GGally ggplot2 magrittr MASS plotly Rcpp]; }; rrscale = derive2 { name="rrscale"; version="1.0"; sha256="1s8ziwh95410i9p176xbsk9k6ccyihi2mqa5gaigcqrkb3dzyy08"; depends=[abind DEoptim nloptr]; }; rrtable = derive2 { name="rrtable"; version="0.3.0"; sha256="1y1hfscnw466azxk1c2kpa486xn8561zl5inv7yk5q8926ls2zc3"; depends=[devEMF editData flextable ggplot2 ggpubr magrittr moonBook officer purrr readr rlang rmarkdown rvg shiny shinyWidgets stringr ztable]; }; - rrum = derive2 { name="rrum"; version="0.2.0"; sha256="0w0f2n14if2b8x7n6v8y8q2vghd8j7xm1xhpxnvy3z50flinwgm7"; depends=[Rcpp RcppArmadillo rgen simcdm]; }; + rrum = derive2 { name="rrum"; version="0.2.1"; sha256="047gsyipvbaw4n2i103fsj1dp0rqwvh5dqhjgiclzb9h7vm840gv"; depends=[Rcpp RcppArmadillo rgen simcdm]; }; rsae = derive2 { name="rsae"; version="0.2"; sha256="0gi7igaymsikxx73dw3ak9pg2vhlvcz5xlbxz8clfxy1d66g58hd"; depends=[]; }; rsample = derive2 { name="rsample"; version="1.2.0"; sha256="1vayyj6cijq1ag9r7fpcjfzrgkqhb4zxgajz78hz8dq01q3bgjg0"; depends=[cli dplyr furrr generics glue lifecycle pillar purrr rlang slider tibble tidyr tidyselect vctrs]; }; - rsatscan = derive2 { name="rsatscan"; version="1.0.6"; sha256="19jizazyba32cdz5n65mmr7k4wgv04hxz92z0lrmkqarjci863m9"; depends=[foreign]; }; + rsatscan = derive2 { name="rsatscan"; version="1.0.7"; sha256="14q568xyigjsq8g98y393ln7m45bnrf3sy201mi7432wzxjl6ia8"; depends=[foreign]; }; rsbp = derive2 { name="rsbp"; version="0.1.0"; sha256="0aardngvj9apn8q5vhfpv67rf7d5iqb7xdq7rh8xmgr8341fvbgc"; depends=[dplyr lubridate magrittr purrr reshape2 tibble tidyr xml2]; }; rscc = derive2 { name="rscc"; version="0.2.1"; sha256="10srbalj8i67z30amvf08zfa4hs6phvq17kfgys9ihwaknckcyx3"; depends=[crayon formatR highlight igraph tm]; }; - rsconnect = derive2 { name="rsconnect"; version="1.1.1"; sha256="1v88ary1gbrhmcbr2syq4jh7ln5ldd9b6pdh508bwxnkivqfdg3p"; depends=[cli curl digest jsonlite lifecycle openssl packrat renv rlang rstudioapi yaml]; }; + rsconnect = derive2 { name="rsconnect"; version="1.2.0"; sha256="0g2av3838nnsb51h64ypad0c31gh98zyhib8yf9ffg53ijyqmjs1"; depends=[cli curl digest jsonlite lifecycle openssl packrat renv rlang rstudioapi yaml]; }; rscontract = derive2 { name="rscontract"; version="0.1.2"; sha256="0gn0xcvg9nj6m97g4si6bgmgaj6hxpicz8yig7n84jnczh6w510x"; depends=[]; }; rscopus = derive2 { name="rscopus"; version="0.6.6"; sha256="0kl6rv0j2396b8izvy0lp1f588il6w3yhq6d4swv8x8z14rsgcpw"; depends=[dplyr glue httr jsonlite plyr tidyr]; }; rscorecard = derive2 { name="rscorecard"; version="0.26.0"; sha256="0l0xx5q93na2fbl1gb11mv4xd514jmkhz95w4054pdmrq6smdc97"; depends=[dplyr httr jsonlite lazyeval magrittr purrr tidyr]; }; @@ -16717,20 +16968,20 @@ in with self; { rsimsum = derive2 { name="rsimsum"; version="0.11.3"; sha256="1pncp138ch69pb21lks8ziwhn2vhb5y812g2i9zfpdmfnprhg2d6"; depends=[checkmate generics ggplot2 ggridges knitr lifecycle rlang scales]; }; rsinaica = derive2 { name="rsinaica"; version="0.6.1"; sha256="1ba19b2fgnnl50qp6hgjppgxbadghq68qap9f0m51k2k3ijgfiwn"; depends=[dplyr httr jsonlite lubridate stringr]; }; rskey = derive2 { name="rskey"; version="0.4.4"; sha256="1la3apypp1kk425r753vqwm3nk9zmynp9gix6db0ckkssw0fjxpw"; depends=[berryFunctions rstudioapi]; }; - rsleep = derive2 { name="rsleep"; version="1.0.9"; sha256="1yrpshyfjyp02qc8qys9h7sv0q6dvq7sj4jccwk5v9q69wpgdgzq"; depends=[abind edfReader ggplot2 jsonlite psd signal xml2]; }; + rsleep = derive2 { name="rsleep"; version="1.0.11"; sha256="005nqqavqji7ppwsznq5j0gs3ia6xxvqjvxwx7nv7xlr48q45ly9"; depends=[abind dplyr edfReader ggplot2 jsonlite psd readr signal xml2 xts]; }; rslp = derive2 { name="rslp"; version="0.2.0"; sha256="186k1gngirqhvhii4ysq77wjf5gf75c7gya73minb0pfg9fn16l7"; depends=[magrittr plyr stringi stringr tokenizers]; }; rslurm = derive2 { name="rslurm"; version="0.6.2"; sha256="0z5lyrkvfh2201sc772gzbz3hc1mc04pxww611iwjf6qwzn5h0al"; depends=[whisker]; }; rsm = derive2 { name="rsm"; version="2.10.4"; sha256="1bh2kp0j10zsrkhv9ylghbi9cyrj4q6crbngv9pk0kkby2r4am2h"; depends=[estimability]; }; rsmatch = derive2 { name="rsmatch"; version="0.2.0"; sha256="1cfm4wqxdqrfkgyh370qjf10b9ddpbhq8w2f0vrz95nbsh0llgw9"; depends=[dplyr MASS Matrix]; }; - rsmatrix = derive2 { name="rsmatrix"; version="0.2.6"; sha256="08d2qxwkfb3blqdzjq98b42jj6bv0n5dzmk8aqzy1mh8rr9jkps2"; depends=[Matrix]; }; + rsmatrix = derive2 { name="rsmatrix"; version="0.2.8"; sha256="1yc9zhfpzadlk39z7lzxd26qmg9hq24c32md7bkny6yyrhy857sn"; depends=[Matrix]; }; rsnell = derive2 { name="rsnell"; version="0.1"; sha256="0syz4d761sfka7ykg574sdzp3gi781m6xzz2m1d0yfmb1hl2d2xz"; depends=[dplyr tibble tidyr tidyselect]; }; - rsoi = derive2 { name="rsoi"; version="0.5.5"; sha256="13afk5rf2gdnikd36x00513kafkcfh0q9hqzsn331fqggxr1nfyi"; depends=[curl memoise]; }; + rsoi = derive2 { name="rsoi"; version="0.5.6"; sha256="0x22mh27bsjrpc90dss59ycib6qlpvk9vb9p07fxlk6b68vdfi06"; depends=[curl memoise]; }; rsolr = derive2 { name="rsolr"; version="0.0.13"; sha256="1pky70f4w44xaz57ricq40c950l443q693h0wfvk684wcvgnga0s"; depends=[BiocGenerics graph RCurl restfulr rjson S4Vectors XML]; }; rspa = derive2 { name="rspa"; version="0.2.8"; sha256="0cl00y9xy5iwmx003zja7b21db5sib7izs8qgmp6731w68bvdj2q"; depends=[lintools validate]; }; rsparkling = derive2 { name="rsparkling"; version="0.2.19"; sha256="1rb43lslhlg8jpniirzch8gnl86x6d3shcfp9fpxm0qd3fqrlm6z"; depends=[h2o sparklyr]; }; rsparse = derive2 { name="rsparse"; version="0.5.1"; sha256="15kdllm2lh6xdlv4j0ljyj5pczhx26s9d8cac7953zbb0sd45chz"; depends=[data_table float lgr Matrix MatrixExtra Rcpp RcppArmadillo RhpcBLASctl]; }; rspiro = derive2 { name="rspiro"; version="0.4"; sha256="1k91zdph8inkdyafz73lacbgq8x7rp55407rkpnr7nf0sbshxrr2"; depends=[]; }; - rspm = derive2 { name="rspm"; version="0.4.0"; sha256="0qjjl5k0lfzdwvqa4mjpqp2dkrg5r2gpmninyazaspsdqcydl394"; depends=[]; }; + rspm = derive2 { name="rspm"; version="0.5.0"; sha256="03wr8m6vk6fbxvpir3hfg3pjv22x5l641b6089zk468iygylg2a4"; depends=[]; }; rsppfp = derive2 { name="rsppfp"; version="1.0.4"; sha256="123yv54i58xj4wx9n08qp50mm4l271fm1zhzimrxx22wn2bg8zy5"; depends=[doParallel dplyr foreach igraph stringr tidyr]; }; rsprite2 = derive2 { name="rsprite2"; version="0.2.1"; sha256="1j1v9d5h2p9574zsl8gi4lkmq1yblklmpd40fd19bw1p67fqhpm0"; depends=[checkmate Rdpack]; }; rsq = derive2 { name="rsq"; version="2.6"; sha256="01b9rl2ng1sq0ibpfsf50agkwh01pfpw354vvgdjd0lzh9dxmsgp"; depends=[deming Deriv lme4 MASS Matrix nlme]; }; @@ -16744,7 +16995,7 @@ in with self; { rstatix = derive2 { name="rstatix"; version="0.7.2"; sha256="1891a976k2qjrh1vkzfg8icxblxa978wbazg7mqq8pcw3nmzbip0"; depends=[broom car corrplot dplyr generics magrittr purrr rlang tibble tidyr tidyselect]; }; rstatscn = derive2 { name="rstatscn"; version="1.1.3"; sha256="07w7ixq1faq7mif2ksxcgl8n6ali9h0wx0nb2yz4kbdgvz68r7b9"; depends=[httr jsonlite]; }; rstiefel = derive2 { name="rstiefel"; version="1.0.1"; sha256="063nj6k2qzc5wd1dk6m6ld16sk2vlfa8ic86gc4qkqsla8l82fgg"; depends=[]; }; - rstpm2 = derive2 { name="rstpm2"; version="1.6.2"; sha256="1qxd1ffim2nsa16jqnxbq2imhicdhc3z7b55wz549zybdv2whkh6"; depends=[bbmle BH deSolve fastGHQuad mgcv Rcpp RcppArmadillo survival]; }; + rstpm2 = derive2 { name="rstpm2"; version="1.6.3"; sha256="07q3n9hv8azwiipggyb6ykhvb8qy10s4nkp5irv76d54fsl7jq2y"; depends=[bbmle BH deSolve fastGHQuad mgcv mvtnorm Rcpp RcppArmadillo survival]; }; rstream = derive2 { name="rstream"; version="1.3.7"; sha256="1ilkndp0jb4p91jmf3f47054sx9wzgk55vic2qlh59vs43mvs99i"; depends=[]; }; rstudio_prefs = derive2 { name="rstudio.prefs"; version="0.1.9"; sha256="1q8c6x8pdizkwyk8llqz11imvsacyi670yvzarg79843w7xvj76d"; depends=[cli dplyr fs jsonlite purrr rappdirs rlang rstudioapi rvest tibble]; }; rstudioapi = derive2 { name="rstudioapi"; version="0.15.0"; sha256="1kvc870gx02cpb800zjvdrhfhyfpzgkydgw2g7kxdlrpr8fwhnwk"; depends=[]; }; @@ -16754,14 +17005,14 @@ in with self; { rsvd = derive2 { name="rsvd"; version="1.0.5"; sha256="07p2hjmpcwcsang8z9sjkpy94rydcin7m3hyvcgzgm5cd6w8c1p4"; depends=[Matrix]; }; rsvddpd = derive2 { name="rsvddpd"; version="1.0.0"; sha256="0p2cpv3ipkvl27zhncpcyxp6lqw54ncdnxyk659qc24l0fqbw7dc"; depends=[MASS matrixStats Rcpp RcppArmadillo]; }; rsvg = derive2 { name="rsvg"; version="2.6.0"; sha256="0w29isj7n33vwacvk5h6ghgm9j3phghnz7a98b1xi60cyk08qi2b"; depends=[]; }; - rswipl = derive2 { name="rswipl"; version="9.1.17"; sha256="1933ag3wzch7qlpp2rfbxdqkx4p0h5znq6v5qh4kifh94v72pl13"; depends=[Rcpp]; }; + rswipl = derive2 { name="rswipl"; version="9.1.17.1"; sha256="01q3b8mlgy4qf56ql808yi18msq9c4qafmnzmvq1jc8lfqkqszqp"; depends=[Rcpp]; }; rsyncrosim = derive2 { name="rsyncrosim"; version="1.4.9"; sha256="1px8az162hiz5615x49m67y1ymcqla5cbnz5q7n13fahl8z6hrm1"; depends=[DBI gtools lifecycle RSQLite terra]; }; rsyntax = derive2 { name="rsyntax"; version="0.1.4"; sha256="0bmi0qc535scdzrdr9sxnigby5ynw9dk95f99p55plc506z3pfya"; depends=[base64enc data_table digest igraph magrittr png rlang stringi tidyselect tokenbrowser]; }; rsyslog = derive2 { name="rsyslog"; version="1.0.3"; sha256="1wslqvc8d49qz13vixfb8pqinb5p1k0w297wvflslhfkk5rx98x4"; depends=[]; }; rt = derive2 { name="rt"; version="1.1.0"; sha256="1wwx3pjwsqvar25cddc4090vcngir81a7n9yiv4q8i47h58xmc2g"; depends=[httr stringr]; }; rt_test = derive2 { name="rt.test"; version="1.18.7.9"; sha256="0ywkdjvfzmrmmsfkz4jbhwzbzv7wivx80xy8wr92dch1862h6ias"; depends=[]; }; rt3 = derive2 { name="rt3"; version="0.1.2"; sha256="1fqbymkz4csavkxrs26glzrh0kw3qy9x5smgddgda9a1dxh9ljkm"; depends=[]; }; - rtables = derive2 { name="rtables"; version="0.6.3"; sha256="04s3g436xgnn0j74mkp7j16klrarpw2pq5gqx10n76r554r3j6m5"; depends=[formatters htmltools magrittr]; }; + rtables = derive2 { name="rtables"; version="0.6.6"; sha256="003hsjp023gxbidk3m3i78hvak9ixv2c5yv1h7kfjir0jcgjm2gp"; depends=[checkmate formatters htmltools magrittr stringi]; }; rtape = derive2 { name="rtape"; version="2.2"; sha256="0q7rs7pc1k1kayr734lvh367j5qig2nnq5mgak1wbpimhl7z3wm7"; depends=[]; }; rtdists = derive2 { name="rtdists"; version="0.11-5"; sha256="1v8yhyvliw3dm3ciwxxaa9spfw05wp334l7gmvgv20mab2kjxkwp"; depends=[evd gsl msm Rcpp]; }; rtematres = derive2 { name="rtematres"; version="0.2"; sha256="1d0vrprvnlk4hl2dbc6px9xn9kx9d1qvlqxd798hzda6qg5wwvf2"; depends=[gdata plyr RCurl XML]; }; @@ -16769,7 +17020,7 @@ in with self; { rtern = derive2 { name="rtern"; version="0.1.2"; sha256="0i9493f3rykhjxwbvydz6aikzkwfphq3dyc8jw0fzw057zd24cgb"; depends=[rlang]; }; rtf = derive2 { name="rtf"; version="0.4-14.1"; sha256="032ff0yavqmd2d9svgwkmvxwh0cxjbac6pj48v4cshi898f02rhh"; depends=[R_methodsS3 R_oo]; }; rtgstat = derive2 { name="rtgstat"; version="0.3.2"; sha256="1alvs2gd0kp11vlnk6ql2hk6fm1mn5wdkm6p9c8amb1n6i3c097x"; depends=[cli dplyr httr2 purrr snakecase stringr tidyr]; }; - rticles = derive2 { name="rticles"; version="0.25"; sha256="17nggn3zrbi1nj8g8v0hq3sakjvl742vhljdnxw7h6cx3j7123xg"; depends=[knitr lifecycle rmarkdown tinytex xfun yaml]; }; + rticles = derive2 { name="rticles"; version="0.26"; sha256="0v1sji223iifqmq9hakr1wcgzfca52nvmh3vbi6s6d309qc77vkk"; depends=[knitr lifecycle rmarkdown tinytex xfun yaml]; }; rticulate = derive2 { name="rticulate"; version="1.7.3"; sha256="0h22ixngz4nw85s79ssanms9ysvx0kgp0srq2nvyfk4mm7g4hfi7"; depends=[dplyr ggplot2 glue magrittr mgcv purrr readr rlang tibble tidymv tidyr tidyselect]; }; rtiddlywiki = derive2 { name="rtiddlywiki"; version="0.1.0"; sha256="1nipbly7b6gn49rwy6mrbg1bnh437qyayxrnskixc0fifzln43xl"; depends=[bookdown httr jsonlite rmarkdown settings stringr]; }; rtide = derive2 { name="rtide"; version="0.0.9"; sha256="0gr0j52jy7y1w1s0s88rjv9l85yvavypagmi0qw2ix9ca2xadlzl"; depends=[abind chk dttr2 tibble]; }; @@ -16778,13 +17029,13 @@ in with self; { rtip = derive2 { name="rtip"; version="1.1.1"; sha256="0lfny8nvgnf90xsmgmr32nzjbw8117m4vw7d0bc3xm4pzpnymjdq"; depends=[boot ggplot2 mvtnorm plyr rootSolve]; }; rtist = derive2 { name="rtist"; version="1.0.0"; sha256="0p4jlz0z0nbvmixdrym6nqagz2i28zbsijcj785rd6wiy72d2hg5"; depends=[]; }; rtk = derive2 { name="rtk"; version="0.2.6.1"; sha256="1xafmp5y5p8fnsh16wj8n08x69v2hawnsvsy7g4dcz1i5xkhyc0m"; depends=[Rcpp]; }; - rtkore = derive2 { name="rtkore"; version="1.6.7"; sha256="0v3p2amkkz137v1vqd1xiv9i1jayd265mwyajjzw56ngm8qpr4jv"; depends=[inline Rcpp]; }; + rtkore = derive2 { name="rtkore"; version="1.6.10"; sha256="1mdvlqnhp0m79j5ak81i91w5y1jqh43f6qyxajn20a8jryj0f68b"; depends=[inline Rcpp]; }; rtlr = derive2 { name="rtlr"; version="0.1.0"; sha256="1jvm45kkz6gfwnhaxy06snh1r3qc4ayrb84mi2zy2n2axhb2lvng"; depends=[lifecycle stringr]; }; - rtmpt = derive2 { name="rtmpt"; version="1.0-0"; sha256="0a8q02vhjhm8l8y58kyyjadwm34ddlm5ayhgqmngkhl9f628s1gm"; depends=[coda data_table loo Ryacas stringr truncnorm]; }; + rtmpt = derive2 { name="rtmpt"; version="2.0-0"; sha256="1bmibm83a0p90xk7j1qfybi5yllhs2740nqjkhy1livxp5qizngq"; depends=[coda data_table loo Ryacas stringr truncnorm]; }; rtms = derive2 { name="rtms"; version="0.2.0"; sha256="0zqa386i37wlicwriahmjmx39q4pqyx92p8v895w8s1nssma8nnh"; depends=[ggplot2]; }; rtodoist = derive2 { name="rtodoist"; version="0.1.0"; sha256="12lh14ps4snlyykhc65nvn8ipic8is8ssmgcx73snmifhrzxgdyb"; depends=[digest dplyr getPass glue httr keyring magrittr purrr]; }; - rtoot = derive2 { name="rtoot"; version="0.3.2"; sha256="1ifqx2q7ial6qsidgkm8jqgy762s27scdl5m6dgi13v5yzi01xjj"; depends=[clipr curl dplyr httr jsonlite tibble]; }; - rtop = derive2 { name="rtop"; version="0.6-6"; sha256="0s5kqz7ah5182k5j1r72hqrv05mlns8b67m57a0mn9gfzjhval6p"; depends=[gstat sf sp units]; }; + rtoot = derive2 { name="rtoot"; version="0.3.4"; sha256="0zil9zkmgwmncw1q4nxrnz93bmjg0lfa34qbrf6a5yj63x4dmwar"; depends=[clipr curl dplyr httr jsonlite tibble]; }; + rtop = derive2 { name="rtop"; version="0.6-8"; sha256="0ryha7sxw14z6msrg10xp7ajjpcn9w78y8j08448h84iybr9girk"; depends=[gstat sf sp units]; }; rtrek = derive2 { name="rtrek"; version="0.4.0"; sha256="0w5726mjy8yf9h1kk3snqc4rqbg6b55ybvkbk5xqnp5iarnsd7v4"; depends=[downloader dplyr ggplot2 jpeg jsonlite memoise purrr rvest tibble tidyr xml2]; }; rtrend = derive2 { name="rtrend"; version="0.1.4"; sha256="1l5vlqjxsgin0pjr4gfdf1ba0zapzjs7c4j4mrjpb8p4hvk3wgzz"; depends=[boot fftwtools lubridate magrittr matrixStats plyr Rcpp RcppArmadillo terra]; }; rtrends = derive2 { name="rtrends"; version="0.1.0"; sha256="04xdggf36m294drb9z8khdjr6fgsg4bwkb4mmbbvqfzjpq4mq4y1"; depends=[dplyr lubridate tidyr]; }; @@ -16800,7 +17051,7 @@ in with self; { rtypeform = derive2 { name="rtypeform"; version="2.1.0"; sha256="02qnsw2nd3fnyr0gbmx3690b78k899dxf04g4bqpjlg9y38g1cnr"; depends=[assertthat dplyr glue httr jsonlite lubridate purrr rlang tibble tidyr]; }; rubias = derive2 { name="rubias"; version="0.3.3"; sha256="0xphah4axkchscxcxx7231cb67pqfi4smvy3lazlzbyysgwmr1kk"; depends=[dplyr gtools magrittr Rcpp RcppParallel readr rlang stringr tibble tidyr]; }; rucm = derive2 { name="rucm"; version="0.6"; sha256="1n6axmxss08f2jf5impvyamyhpbha13lvrk7pplxl0mrrrl5g0n8"; depends=[KFAS]; }; - rucrdtw = derive2 { name="rucrdtw"; version="0.1.5"; sha256="0x4y0czfmn3sp8b8dqh4cmnnbqfzf7kgcllv2x80zhk5nyqpyagx"; depends=[Rcpp]; }; + rucrdtw = derive2 { name="rucrdtw"; version="0.1.6"; sha256="0qa6jw6g8ax5l2js09px4chy4n0ibvprj0ygdh3iwf1pbskw3kma"; depends=[Rcpp]; }; rugarch = derive2 { name="rugarch"; version="1.5-1"; sha256="07nyfwaqqlizg0cawgiv8wdj7qr36pgi0z1mk9lambzb0w453zlz"; depends=[chron ks nloptr numDeriv Rcpp RcppArmadillo Rsolnp SkewHyperbolic spd xts zoo]; }; ruijter = derive2 { name="ruijter"; version="0.1.2"; sha256="0phsqnwh47hwl26qihgrrlrazhdzhi6jnmhbylzkpqsclcpl52b7"; depends=[]; }; ruimtehol = derive2 { name="ruimtehol"; version="0.3.1"; sha256="01p8xfl1gbgfzyfwqgnshyvzcjlffvdnfxcr277ic32g6cas65hg"; depends=[BH Rcpp]; }; @@ -16808,8 +17059,8 @@ in with self; { ruler = derive2 { name="ruler"; version="0.3.0"; sha256="0k6xvb06cqiinvkpbmylzm0r11h52yay6k70jfmz2c0g5rb6bj4r"; depends=[dplyr keyholder magrittr purrr rlang tibble tidyr]; }; rules = derive2 { name="rules"; version="1.0.2"; sha256="1y9872akqsb1lm9hyj698dxakd53yxhbanv4z2yb43g84s5bsscl"; depends=[dials dplyr generics parsnip purrr rlang stringr tidyr]; }; rumidas = derive2 { name="rumidas"; version="0.1.1"; sha256="1hnkjj689kn7sx5gvjrh1x3n5pickb9d0adb5n0grjq4j5ympbns"; depends=[highfrequency lubridate maxLik Rdpack roll tseries xts zoo]; }; - ruminate = derive2 { name="ruminate"; version="0.1.1"; sha256="1prkbvbbrwr2hk94dzdkn9qhy0hsf0g0fyhv0ffjbrk51kl591xr"; depends=[digest dplyr DT flextable formods ggplot2 onbrand PKNCA plotly rhandsontable rlang shiny shinyAce shinyWidgets stringr tidyr yaml]; }; - runMCMCbtadjust = derive2 { name="runMCMCbtadjust"; version="1.0.3"; sha256="1wiv9zacm30v8yk0p6qmqi1yp7ns29wqdl2ykr2afm39y00agcxi"; depends=[coda]; }; + ruminate = derive2 { name="ruminate"; version="0.2.1"; sha256="09iinlp4fljshjfya6mk2j5i0x75w675ks4xgl10v8afpp5q8yha"; depends=[digest dplyr DT flextable formods ggplot2 onbrand PKNCA plotly rhandsontable rlang shiny shinyAce shinyWidgets stringr tidyr yaml]; }; + runMCMCbtadjust = derive2 { name="runMCMCbtadjust"; version="1.0.5"; sha256="0lf14704h1a5zfpq8f4h2f5isvsn7j4bj5ks4y5p362hrin07ld0"; depends=[coda]; }; runcharter = derive2 { name="runcharter"; version="0.2.0"; sha256="0n4jkgvlbpafjks22fjackazp246c7skphirjsrzkrg169qwdin0"; depends=[data_table ggplot2 magrittr zoo]; }; runes = derive2 { name="runes"; version="0.1.0"; sha256="1s2vhwya434q70j4aq4qbds8wivscc5cyldr5pch7p41nqj0j7aw"; depends=[]; }; runexp = derive2 { name="runexp"; version="0.2.1"; sha256="0pcxwz0kpfrcsfalwlcwp81k3dyc9rqm9rba25xkp51bwz5scv64"; depends=[doParallel foreach]; }; @@ -16820,16 +17071,16 @@ in with self; { rusda = derive2 { name="rusda"; version="1.0.8"; sha256="0xx72jjf1pyixwpnvvgx5n2vc5gl46bam1caav043iqki68wb338"; depends=[foreach httr plyr RCurl stringr taxize testthat XML]; }; rusk = derive2 { name="rusk"; version="0.1.1"; sha256="0a6vbcnfzlfq9fmibiy0cwcfix65qhxq4f7wc7d53riga82s00lk"; depends=[dplyr ggforce ggplot2 reshape2 shiny tidyr]; }; rusquant = derive2 { name="rusquant"; version="1.0.2"; sha256="1z1v038d5bzb48f4xa75ypj0lf88x7sf87l90z8q46i8b4iawai8"; depends=[data_table httr jose jsonlite quantmod rvest stringr XML xts]; }; - rust = derive2 { name="rust"; version="1.4.1"; sha256="022b9g095y9ghgr838vn25ajd8ya41kw0h7xxxq3lr970xlijvrp"; depends=[Rcpp RcppArmadillo]; }; - ruta = derive2 { name="ruta"; version="1.2.0"; sha256="0nycvy38aci3flrnqns3ppyxph9f57gdpxkpj7jfv871lzd3bkqw"; depends=[keras purrr R_utils tensorflow]; }; + rust = derive2 { name="rust"; version="1.4.2"; sha256="1pp37h27pyjzcwabazyfmlgrma6x0k8hbq3ksfvlgphsk9hac93z"; depends=[Rcpp RcppArmadillo]; }; rutifier = derive2 { name="rutifier"; version="1.0.4"; sha256="045pr8apd105azs1glpwqrbamglqddxfpml9yrfrlaivz3fjd9l8"; depends=[R_utils]; }; rutledge = derive2 { name="rutledge"; version="0.1.0"; sha256="04ili75fj8dxhhwmbzgb2mnak89zscdyfaxss7rsl0byjgr0h8zs"; depends=[magrittr tibble]; }; ruv = derive2 { name="ruv"; version="0.9.7.1"; sha256="1n4q9mrp9f644spbns6bbnzmlabrg90hwkdfg3hnm3rxp9b4xid0"; depends=[ggplot2 gridExtra scales]; }; rv = derive2 { name="rv"; version="2.3.5"; sha256="1rjbhlvd7cxn7yw001p859zl5ibxl4di03j1aadm4zycq1zyr6q7"; depends=[]; }; rvHPDT = derive2 { name="rvHPDT"; version="4.0"; sha256="0a6mzb714cvgwgam7429wzv0r28yl2aqhfsx7wjpw265ys8qyw1h"; depends=[gtools]; }; - rvMF = derive2 { name="rvMF"; version="0.0.7"; sha256="0h0d710sfxmf0gk4k5nmx5m4b04zkazrzf7c8kh3pcmc2xp3ml82"; depends=[Bessel Rcpp Rfast scModels]; }; + rvMF = derive2 { name="rvMF"; version="0.0.8"; sha256="1386206s3i8a58fk3vsc7zg323hnmq5sc5p9yhcim6qbabsfnljc"; depends=[Bessel Rcpp Rfast scModels]; }; rvalues = derive2 { name="rvalues"; version="0.7.1"; sha256="0vgizlm5g6mnzvwsprgg0wj0k2y3nc8zn1bqdaw58py92mqpvj1d"; depends=[]; }; rvcheck = derive2 { name="rvcheck"; version="0.2.1"; sha256="09khjklvzbafd7r55496by01a9g3y291d87hpy43w44dmz9fzn9a"; depends=[BiocManager yulab_utils]; }; + rvec = derive2 { name="rvec"; version="0.0.6"; sha256="15wwpkhnzib5nnyv15mdv8avxrzwc57xrpk7xr6qx440ibsg60x9"; depends=[cli glue matrixStats rlang tibble tidyselect vctrs]; }; rversions = derive2 { name="rversions"; version="2.1.2"; sha256="0q5ip3rkhcxz7472fbqddrw3a2wm31b18w7ax0pi6wc27qiihn6y"; depends=[curl xml2]; }; rvertnet = derive2 { name="rvertnet"; version="0.8.2"; sha256="09lja7dd1rdln7cpd4rn4l3fynm223as3k295dcwf4x26gna7s9d"; depends=[crul dplyr ggplot2 jsonlite maps tibble]; }; rvest = derive2 { name="rvest"; version="1.0.3"; sha256="07hws9infwchy19smrcd9m6c0jii0bdn335yxqk3ramgj5ryyrd4"; depends=[cli glue httr lifecycle magrittr rlang selectr tibble withr xml2]; }; @@ -16849,25 +17100,25 @@ in with self; { rwhatsapp = derive2 { name="rwhatsapp"; version="0.2.4"; sha256="004d0cigay7bz754lrxjdwp1xsclc23wh03dlzyby900xcdizxk7"; depends=[stringi tibble]; }; rwicc = derive2 { name="rwicc"; version="0.1.3"; sha256="14jyc0qq6rxrmwvwdm59axib72q347s6ra8j1h97p75ah59kxndr"; depends=[arm biglm dplyr ggplot2 lubridate magrittr pryr scales]; }; rwisp = derive2 { name="rwisp"; version="1.0.5"; sha256="0wxc2zzfgqnygx6q7b0gjb04vphdl8x1idfp5pz33apwv2192viw"; depends=[]; }; - rworkflows = derive2 { name="rworkflows"; version="0.99.13"; sha256="17n0qcy8gj7l3vpzy3grnimazqfsmralpakr4mivm614rrl86yzd"; depends=[badger BiocManager data_table desc here renv yaml]; }; + rworkflows = derive2 { name="rworkflows"; version="1.0.0"; sha256="1y7r8fyxqj8yfy86wj7h3axpyg59ina5hvbf8156vax11nv3pa4f"; depends=[badger BiocManager data_table desc here renv yaml]; }; rworldmap = derive2 { name="rworldmap"; version="1.3-8"; sha256="007avjl7jhllybp82illrn8v38a85j6xbzk5pvykfx8ayx4wc3m6"; depends=[fields raster sp terra]; }; rworldxtra = derive2 { name="rworldxtra"; version="1.01"; sha256="183z01h316wf1r4vjvjhbj7cg4xarn4b8qbmnn5y7nrrdndzi163"; depends=[sp]; }; rwstats = derive2 { name="rwstats"; version="0.1"; sha256="10jj2lkilysz7mmysblj6l4jjc560rqsps0ivkvyr7caj8gfhdlb"; depends=[]; }; rwty = derive2 { name="rwty"; version="1.0.2"; sha256="0p0bpq5dk8vjqx8ry364xhaq3rgxa49planapggicg7by2mhaacc"; depends=[ape coda GGally ggdendro ggplot2 phangorn plyr reshape2 viridis]; }; rwunderground = derive2 { name="rwunderground"; version="0.1.8"; sha256="02p26gkicd5v511kb04p1h3wxj57r7j5vr97n3ibywc6ivz7nqxa"; depends=[countrycode dplyr httr lubridate tibble]; }; rxSeq = derive2 { name="rxSeq"; version="0.99.3"; sha256="0g0n2pzbssz61psghjp1vrlspgph4s39x1k1zhcz7ivdn5pjb2nx"; depends=[MASS numDeriv VGAM]; }; - rxode2 = derive2 { name="rxode2"; version="2.0.14"; sha256="1737f5zkqkmn9a45sk61qi90l116c070fgg4wzdmx0qiay0wsmq0"; depends=[backports BH checkmate cli data_table ggplot2 inline lotri magrittr memoise PreciseSums qs Rcpp RcppArmadillo rex rxode2et rxode2ll rxode2parse rxode2random sys]; }; - rxode2et = derive2 { name="rxode2et"; version="2.0.10"; sha256="1lzjl7x190zcn9ga6p4q7kfwanhmipjms433pa8zma9r6538ni92"; depends=[checkmate cli crayon lotri magrittr Rcpp rxode2parse rxode2random]; }; + rxode2 = derive2 { name="rxode2"; version="2.1.1"; sha256="10dzqln32ap19bsrr3g20wx22bqs6bb5pg2zn9hsvwwqi5c4bn3f"; depends=[backports BH checkmate cli data_table ggplot2 inline lotri magrittr memoise PreciseSums qs Rcpp RcppArmadillo rex rxode2et rxode2ll rxode2parse rxode2random sys]; }; + rxode2et = derive2 { name="rxode2et"; version="2.0.11"; sha256="0vmzqy2qqwlh6kd8jvnh4dllwyfpvv51cd9qv7q1x59jifripi3a"; depends=[checkmate cli crayon lotri magrittr Rcpp rxode2parse rxode2random]; }; rxode2ll = derive2 { name="rxode2ll"; version="2.0.11"; sha256="0fj5lbs67g1adjywfnav88rsj0sy3lwwf4gyimdh89rbm1glrrs3"; depends=[BH checkmate Rcpp RcppEigen RcppParallel StanHeaders]; }; - rxode2parse = derive2 { name="rxode2parse"; version="2.0.16"; sha256="0y0hghvvik7cnh828mrp4mbnffylby3d1g1hrbhszac061n8lbvj"; depends=[BH checkmate crayon data_table digest dparser knitr qs Rcpp RcppEigen rex StanHeaders]; }; - rxode2random = derive2 { name="rxode2random"; version="2.0.11"; sha256="0rv974j9nxvbl3xdr8x8phlhj54gpkl9km73c25srxi9r0p9mkip"; depends=[BH checkmate lotri Rcpp RcppArmadillo rxode2parse sitmo]; }; - rxylib = derive2 { name="rxylib"; version="0.2.11"; sha256="1g5vrw6hb7i19vdg6gl62hn6mn37b5vl6jjr0nsry2880sxybjvq"; depends=[BH Rcpp]; }; + rxode2parse = derive2 { name="rxode2parse"; version="2.0.17"; sha256="085wr1l2qksph7kpcwq1i4w7cvnhcvbig4ambjdqkckc04p7rrg0"; depends=[BH checkmate crayon data_table digest dparser knitr qs Rcpp RcppEigen rex StanHeaders symengine]; }; + rxode2random = derive2 { name="rxode2random"; version="2.0.12"; sha256="1fh5231lrns38d4h6qyiyai764g7j57gi56dhdwmjijh5aram1ng"; depends=[BH checkmate lotri Rcpp RcppArmadillo rxode2parse sitmo]; }; + rxylib = derive2 { name="rxylib"; version="0.2.12"; sha256="1drmizyvbhza6p5gdqn2ahkppa99z1xvc1w7s4mbxjh15x3c633g"; depends=[BH Rcpp]; }; ryandexdirect = derive2 { name="ryandexdirect"; version="3.6.2"; sha256="03k4z32wgc2rkmz4lj89s3w7w9ywwbdbkqm2nfapl5q45pz6wwzz"; depends=[bitops data_table dplyr httr jsonlite magrittr purrr readr stringr tidyr xml2]; }; rym = derive2 { name="rym"; version="1.0.6"; sha256="135h9lmyrpnkc4q5kdcpbr96glc0a9bah01sm4qakzdcb6zsxsh1"; depends=[httr purrr stringr]; }; rytstat = derive2 { name="rytstat"; version="0.3.0"; sha256="1shsc54ss9120ngl59pnd6kqclfh2ilva97xdsx58a9c2kry2dmm"; depends=[cli dplyr gargle httr pbapply rlang snakecase stringr tidyr withr]; }; rzentra = derive2 { name="rzentra"; version="0.1.0"; sha256="1knp1616ck64wgf3r80s1nywdnljc1r9fjvgg531j0fxir04aqkl"; depends=[data_table dplyr httr jsonlite lubridate magrittr purrr]; }; - rzmq = derive2 { name="rzmq"; version="0.9.11"; sha256="16h0x54fq54dl5h4nd5qfxd4frmy4zs25ysijxkyiq4vffyaqpri"; depends=[]; }; - s2 = derive2 { name="s2"; version="1.1.4"; sha256="0k209rx7w47rqgydy8h7ldngxm0b8d8yidhwbgw2rrddx8jlj2xy"; depends=[Rcpp wk]; }; + rzmq = derive2 { name="rzmq"; version="0.9.12"; sha256="0033kipyla0sic1sr6wldnq40q0l9865zdkb0lsb5zh50y036vrz"; depends=[]; }; + s2 = derive2 { name="s2"; version="1.1.6"; sha256="0rm0jd5k5w725v1bnn6ix8vic40grdh61y6qdy8jy4lhg1mjx78x"; depends=[Rcpp wk]; }; s20x = derive2 { name="s20x"; version="3.1-40"; sha256="1b2bbkbkmr4d4bfihd87c3vwdfxb21hzaxhd6zqnwz1n0xg2zhb5"; depends=[]; }; s2dv = derive2 { name="s2dv"; version="2.0.0"; sha256="0lgkdb1gphqsggqnyrl1hlfx1x5zxbhb9msr6xyj4hhp03m16z9x"; depends=[abind bigmemory ClimProjDiags easyNCDF easyVerification mapproj maps multiApply NbClust ncdf4 plyr SpecsVerification]; }; s2dverification = derive2 { name="s2dverification"; version="2.10.3"; sha256="10zqw7w8hm7cqbaxy6asflw0i8s5rmki2xhv3d51sm67vb7qn6f4"; depends=[abind bigmemory GEOmap geomapdata mapproj maps NbClust ncdf4 plyr SpecsVerification]; }; @@ -16883,7 +17134,7 @@ in with self; { sFFLHD = derive2 { name="sFFLHD"; version="0.1.2"; sha256="014gy3nj6gr740z4apw82jh4n7s57zmnr95bm3g9xxnwnb224npq"; depends=[conf_design DoE_base R6]; }; sGBJ = derive2 { name="sGBJ"; version="0.1.0"; sha256="145mxfpl8gpycz8fl1ddlxy61rwpcqlfdrva6yhwzv4awwsv1fvn"; depends=[GBJ survival]; }; sGMRFmix = derive2 { name="sGMRFmix"; version="0.3.0"; sha256="183i3159k2cxpanm09zcy2y1vvjd6185gjjf81c3284prw3aky2c"; depends=[ggplot2 glasso mvtnorm tidyr zoo]; }; - sMSROC = derive2 { name="sMSROC"; version="0.1.1"; sha256="18dai7v16w6jj8h2r1qz689fngh5sawlky4068sjhw4shfignd3k"; depends=[flextable foreach ggplot2 icenReg plotROC rms survival thregI]; }; + sMSROC = derive2 { name="sMSROC"; version="0.1.2"; sha256="1fnsaww9a1i4wlv0bfyr2cqr5nb4c07badg3y64ja1mnmc5xl3y6"; depends=[flextable foreach ggplot2 icenReg plotROC rms survival thregI]; }; sMTL = derive2 { name="sMTL"; version="0.1.0"; sha256="03xq19vh4g3j3jbpad92m2rg933h9lcy4wrzkdi9y47v8h3fqyw1"; depends=[caret dplyr glmnet JuliaCall JuliaConnectoR]; }; sNPLS = derive2 { name="sNPLS"; version="1.0.27"; sha256="0h05crdmwmzax4pwmyxb2z1dagyqb3kybpxc064y1kl8m84kcyvv"; depends=[clickR future future_apply ggplot2 ggrepel ks MASS Matrix pbapply]; }; sRDA = derive2 { name="sRDA"; version="1.0.0"; sha256="0g11smn4adm3b79m9w7wzcragxggkf8rrrsgj2yzdhm1d7zzjwbk"; depends=[doParallel elasticnet foreach Matrix mvtnorm]; }; @@ -16902,6 +17153,7 @@ in with self; { sae_prop = derive2 { name="sae.prop"; version="0.1.2"; sha256="19q86xjpvr3s3paspkzsr40zvff60mxxh57xpz0fnxldivynh6ia"; depends=[corpcor fpc magic MASS progress]; }; sae2 = derive2 { name="sae2"; version="1.2-1"; sha256="1ahq2gha8q3k6aj1a1qclibq209a3426sb77qy3fdgph9zkpij1x"; depends=[MASS survey]; }; saeBest = derive2 { name="saeBest"; version="0.1.0"; sha256="0s68w9cikhpac1kdlm1pphvnks1izacs5s87d7r380c3lkgkzd76"; depends=[sae]; }; + saeHB = derive2 { name="saeHB"; version="0.2.2"; sha256="1wv9b656s93r9vnm6j0j10gd1q92vbawhy5ijjzvzsn9drzzwzsc"; depends=[CARBayesdata coda MASS nimble rjags stringr]; }; saeHB_ME = derive2 { name="saeHB.ME"; version="1.0.1"; sha256="134sib6akpwns49mv3vnwflcpwalpi9jgb5qm6dw61s2b01k1m2q"; depends=[coda rjags stringr]; }; saeHB_ME_beta = derive2 { name="saeHB.ME.beta"; version="1.1.0"; sha256="1i1pgvh6xn26w3g4x7bn0d8qi2g9l8fd58ag1i7lrsrq3rx5m83k"; depends=[coda rjags stringr]; }; saeHB_ZIB = derive2 { name="saeHB.ZIB"; version="0.1.1"; sha256="1z7siwv96iq9cww044gy4a7hnzq02s415xav725jqqwr68chham9"; depends=[coda rjags stringr]; }; @@ -16912,7 +17164,7 @@ in with self; { saeMSPE = derive2 { name="saeMSPE"; version="1.2"; sha256="086nmcx14sjwnydka805il11lc02jv9l39kk9j1h2j5p9gz0b3gp"; depends=[Matrix Rcpp RcppArmadillo smallarea]; }; saeRobust = derive2 { name="saeRobust"; version="0.4.0"; sha256="1zx5ghsb842fkdhpr9013vgi3nadzs7d4haqqbx7g5nrx1ixfqlm"; depends=[aoos assertthat ggplot2 magrittr MASS Matrix memoise modules pbapply Rcpp RcppArmadillo spdep]; }; saeSim = derive2 { name="saeSim"; version="0.11.0"; sha256="0s0zcls4j3cx7wbvi0l3q4c3b0f9x9i2wcqnz4gzwyqik6pcfaic"; depends=[dplyr functional ggplot2 MASS parallelMap spdep tibble]; }; - saeTrafo = derive2 { name="saeTrafo"; version="1.0.1"; sha256="0dpz946x1731s3m631hks0y5mwsb7ygfca7ilaa06pnqcyd1zz4j"; depends=[emdi ggplot2 gridExtra HLMdiag moments MuMIn nlme openxlsx parallelMap readODS reshape2 rlang sfsmisc stringr]; }; + saeTrafo = derive2 { name="saeTrafo"; version="1.0.2"; sha256="1kdd70jq7dm3dfg801wy48fzwkw4xvw18l6sdfx1sfkj20s4nyna"; depends=[emdi ggplot2 gridExtra HLMdiag moments MuMIn nlme openxlsx parallelMap readODS reshape2 rlang sfsmisc stringr]; }; saebnocov = derive2 { name="saebnocov"; version="0.1.0"; sha256="0dxbicvmq13wh2xj820qw2ah3j005pqjynynhgkynfvm9nmymrvr"; depends=[descr dplyr rlang]; }; saeeb = derive2 { name="saeeb"; version="0.1.0"; sha256="04vjxmnqcgqcamgjd9qq1dbx0msm40mnn94jjy9pzvsj2gsbws39"; depends=[COUNT MASS]; }; saekernel = derive2 { name="saekernel"; version="0.1.1"; sha256="0zk124kkxrwr3bliy01d3ag4r0flnjg4z3lmm5wmq3w0r4gwgy4f"; depends=[]; }; @@ -16933,27 +17185,28 @@ in with self; { samadb = derive2 { name="samadb"; version="0.2.6"; sha256="1jmk94zf42msgpm3i6d1b1njnpxax3hnbs8w957f6frk97idwp27"; depends=[collapse data_table DBI RMySQL writexl]; }; sambia = derive2 { name="sambia"; version="0.1.0"; sha256="15yz5lrjav5bs8m52crg3l43xmi4gf7wydji76p181ssyg43z2ln"; depends=[dplyr e1071 FNN mvtnorm pROC ranger smotefamily]; }; samc = derive2 { name="samc"; version="3.2.1"; sha256="0i5k27699p28xzfbdk41ni45l5lp1k2zla5mf15x3livmnn8c3d4"; depends=[circular Matrix raster Rcpp RcppEigen RcppThread terra]; }; + samon = derive2 { name="samon"; version="4.0.2"; sha256="1gv3kvl2jf6x6fcy52k61frcnsnz6xafyfhwq1n08pyzbynlsf08"; depends=[]; }; sampleSelection = derive2 { name="sampleSelection"; version="1.2-12"; sha256="1am1w8c24f27gcdmrk3b4wp9j5awghnw9s9lphnkm10pl31881dy"; depends=[Formula maxLik miscTools mvtnorm systemfit VGAM]; }; sampleVADIR = derive2 { name="sampleVADIR"; version="1.0.0"; sha256="1fxqjbczw5wpdx19rmlc2jwsk8nlkbbpdagn9z1xkfba3xli9f1w"; depends=[lubridate splitstackshape]; }; sampler = derive2 { name="sampler"; version="0.2.4"; sha256="12jjx3ci1yss8dj64bjdmz73cyjfkwb7b9zk4zm48lqv78k6wlv7"; depends=[dplyr purrr reshape tidyr]; }; samplesize = derive2 { name="samplesize"; version="0.2-4"; sha256="0n6z7jmf665lbj3g1mjy87a9fh53z85546bhrkmkgsysb0r9q6iq"; depends=[]; }; samplesize4surveys = derive2 { name="samplesize4surveys"; version="4.1.1"; sha256="0v332xb4vkkjr3nwf3231aqgzsj7mqld9ffkla1nj52lxay2ji75"; depends=[dplyr magrittr TeachingSampling timeDate]; }; - samplesizeCMH = derive2 { name="samplesizeCMH"; version="0.0.0"; sha256="0gdywqmylid4fkz5syzf1wgcan71whhm9gjylmsg4p05hlwvpv1d"; depends=[]; }; + samplesizeCMH = derive2 { name="samplesizeCMH"; version="0.0.3"; sha256="16vifm50yxbyd892z9vk32zpj12j2cprc856s74vn6xhvs6bp9b2"; depends=[]; }; samplesizeestimator = derive2 { name="samplesizeestimator"; version="1.0.0"; sha256="0s783s2hcb9hndhsw5vdss240bkvb0a634fl6wrq42fc8fd95ixc"; depends=[stringi]; }; samplesizelogisticcasecontrol = derive2 { name="samplesizelogisticcasecontrol"; version="2.0.2"; sha256="180c5bvrr3nb88ci1cg8kh6kj6gfg1dfmrabp8a232x2n2ykq76m"; depends=[mvtnorm]; }; - sampling = derive2 { name="sampling"; version="2.9"; sha256="11xis4vzn2ga8ml9xrgfgqzccvwbnabq35aidzdvpnvciybsanvz"; depends=[lpSolve MASS]; }; + sampling = derive2 { name="sampling"; version="2.10"; sha256="0x976wblv663aidqmcif1rjv72nbxf4nzms901lmryxbq1p9gv7x"; depends=[lpSolve MASS]; }; samplingDataCRT = derive2 { name="samplingDataCRT"; version="1.0"; sha256="0ah3fi2sn642c8nicikhjhl1hdsjzshrf1j02swq0jaqggcqjdvk"; depends=[mvtnorm]; }; samplingR = derive2 { name="samplingR"; version="1.0.1"; sha256="1ikmd7dvmrzc06vgpl8f7777pmds3vcfv74r9izlqhxyz39hgc9s"; depends=[dplyr]; }; samplingVarEst = derive2 { name="samplingVarEst"; version="1.5"; sha256="0h78dzb18cknmg6bnjfxaqfdayyghq6skxca1dj1idqh9p4igaqq"; depends=[]; }; samplingbook = derive2 { name="samplingbook"; version="1.2.4"; sha256="08fhzanzb725hlagm0225121gdgipkbfkixizwykggaimkz5j1ad"; depends=[pps sampling survey]; }; + samplingin = derive2 { name="samplingin"; version="1.0.4"; sha256="1z3x4f9bqcn0a4ks82176mpcxj4c9pi7cc2d2i1ymj5lriqx17ca"; depends=[data_table dplyr magrittr rlang]; }; sampsizeval = derive2 { name="sampsizeval"; version="1.0.0.0"; sha256="06mghabwqcc92hdvirm1gcna24hwll2gvm105ljkf5hgn0fa5xii"; depends=[dplyr plyr pracma sn]; }; samr = derive2 { name="samr"; version="3.0"; sha256="01km0f7qgm73x19vbvsxl083hs1dq4dj8qm5h64cxbf20b08my15"; depends=[GSA impute matrixStats openxlsx shiny shinyFiles]; }; sams = derive2 { name="sams"; version="0.4.3"; sha256="01rknjgxyvj3i12mqgnlr7m0wdvxp2ja0rx8hnb700vlxa1xdmhi"; depends=[]; }; samurais = derive2 { name="samurais"; version="0.1.0"; sha256="0s00hd3ax4r662n8iqmd9i56sgyjxbgc59la7qvh3jwcnzcvmgz9"; depends=[MASS Rcpp RcppArmadillo]; }; sand = derive2 { name="sand"; version="2.0.0"; sha256="0a8skj1wi1n9zlm7jb5cix1i4ssdzfpj4ym2854ala9jy6qj7g7n"; depends=[igraph igraphdata]; }; sandbox = derive2 { name="sandbox"; version="0.2.1"; sha256="0k86dgfjg7ib79cl6nwxv1g9i15pk501kd8ynlaj3mijpnhgvbal"; depends=[RLumModel]; }; - sandwich = derive2 { name="sandwich"; version="3.0-2"; sha256="1d72vwxidsyac9mbyxrm06qds63rzcr82nn4c05466gbajsvcc3f"; depends=[zoo]; }; - sandwichr = derive2 { name="sandwichr"; version="1.0.4"; sha256="1g5jg8x4a9qdvcrsali2z1zrbrh628nsings1v02gpvfw2qbdb45"; depends=[caret dplyr ggplot2 gridExtra lwgeom sf]; }; + sandwich = derive2 { name="sandwich"; version="3.1-0"; sha256="1yi3l2q63j0vlaqqh1x3bxb0i7v6lrmmbsc6s8gilfahxq2y3c4n"; depends=[zoo]; }; sanic = derive2 { name="sanic"; version="0.0.2"; sha256="0php70zcxhx6kqcyimx4icx2460ik6frvi3h21jw6qrz631l304r"; depends=[Matrix Rcpp RcppEigen]; }; sanitizers = derive2 { name="sanitizers"; version="0.1.1"; sha256="0gy4z85h639h25hxv7n7irbj7w1m2gxw9sv5480bvbfw756n2pb6"; depends=[]; }; sanityTracker = derive2 { name="sanityTracker"; version="0.1.0"; sha256="0y041x840sg5c05ksljb1y4xag1cib19q5ygp443k13ryfbcgs9k"; depends=[checkmate data_table]; }; @@ -16968,6 +17221,7 @@ in with self; { sapevom = derive2 { name="sapevom"; version="0.2.0"; sha256="0vq4rx85pdjc0wjxjf7wj8j5qs3cb20hwhlc2ypbgrlw7zkcp1z4"; depends=[]; }; sapfluxnetr = derive2 { name="sapfluxnetr"; version="0.1.4"; sha256="0x437nhv3g327apxnihr1wnp4mmzxn9pfk24shpj6a8amxphlzxd"; depends=[assertthat dplyr furrr ggplot2 glue lubridate magrittr purrr rlang stringr tibble tidyr]; }; saqgetr = derive2 { name="saqgetr"; version="0.2.21"; sha256="0s7mmc8gqx89697wkv369x6sp3d1wha4q2zkkwikh835i3alx4zd"; depends=[dplyr httr lubridate magrittr purrr readr stringr tidyr]; }; + sara4r = derive2 { name="sara4r"; version="0.1.0"; sha256="1z112s7z9hcafmags76bazkyrmrrwykhf58g6z637w516nbgn314"; depends=[tcltk2 terra]; }; sarima = derive2 { name="sarima"; version="0.9.1"; sha256="0gj3z7471153g1cyclmkh9lcc2zqpv2d4yzq6k6hi2pxmb5hihsq"; depends=[Formula lagged ltsa numDeriv PolynomF Rcpp RcppArmadillo Rdpack]; }; sarp_snowprofile = derive2 { name="sarp.snowprofile"; version="1.3.2"; sha256="1nrkifs6kq8kr3jmwi76d6jjbps1ijrnjxrslsyrpyvr2rj4p82h"; depends=[data_table xml2]; }; sarp_snowprofile_alignment = derive2 { name="sarp.snowprofile.alignment"; version="1.2.1"; sha256="11c9wq7rr05jq6v6rcg3wy3h7w44clbxx2mysrqj50w38ih3r29b"; depends=[data_table dtw sarp_snowprofile]; }; @@ -16975,17 +17229,17 @@ in with self; { sars = derive2 { name="sars"; version="1.3.6"; sha256="198dz3gbzm7iqa2p813anifzpjkna3blf4yzyy73j43h8w4k5v0b"; depends=[AICcmodavg cli crayon doParallel foreach nortest numDeriv]; }; sarsop = derive2 { name="sarsop"; version="0.6.14"; sha256="0y315gg3masbpvsf9zk0abj0mh0834h1yhmjg1fwwbqvygg64cjp"; depends=[BH digest Matrix processx xml2]; }; sas7bdat = derive2 { name="sas7bdat"; version="0.7"; sha256="0pwmngwmkybz64sqby86vzxq5wwfkh5hxnqncdv0fmp6w6x7jhjn"; depends=[]; }; - sasLM = derive2 { name="sasLM"; version="0.9.12"; sha256="03rh64yym31zkfhwaw083839yl76jyrs6aw0vk0jhw82zl7b0z2v"; depends=[mvtnorm]; }; + sasLM = derive2 { name="sasLM"; version="0.10.0"; sha256="0n6rprwhbsi9ii4xq2l7ymnbbhk616kn4cp8bk4x2d0saaqzbp66"; depends=[mvtnorm]; }; sasMap = derive2 { name="sasMap"; version="1.0.0"; sha256="11vhhxhakqm1gsb3p4s4966sapmrqfyw79zfppbx5lnqi3xr0ngn"; depends=[readr stringi stringr]; }; sasfunclust = derive2 { name="sasfunclust"; version="1.0.0"; sha256="1ba7g3rxyq5h806na6bsdvh6mw6hydgcf3740qkfd4d5fx7m0mq4"; depends=[fda MASS Matrix matrixcalc mclust Rcpp RcppArmadillo]; }; sasr = derive2 { name="sasr"; version="0.1.2"; sha256="1cpmfclxphk5s3nr1znricm195j9xix5pw8jkyq3hhg0h7xirzi7"; depends=[checkmate reticulate]; }; - sass = derive2 { name="sass"; version="0.4.7"; sha256="1vp9qnhkvz4shhvwrwbwcy1xnrgry0rmqxsg96ggv90m6sv0hyki"; depends=[fs htmltools R6 rappdirs rlang]; }; + sass = derive2 { name="sass"; version="0.4.8"; sha256="0364ndnmlqrga3k4c1hfy1894k5wpm9srf9201g9zb92rlq2kfj2"; depends=[fs htmltools R6 rappdirs rlang]; }; sassy = derive2 { name="sassy"; version="1.2.0"; sha256="0485qa549svfb268djycbp4xa99fm1vhglpqlzm4k7szhfb6pkbq"; depends=[common fmtr libr logr procs reporter]; }; satdad = derive2 { name="satdad"; version="1.1"; sha256="1ig7z0z4filq57sk9rc38pnx79j1lxm1sacl9hbi407y0pqx01k7"; depends=[BH graphicalExtremes igraph maps partitions Rcpp RcppArmadillo]; }; - sate = derive2 { name="sate"; version="1.1.0"; sha256="0d1b0gp5abh5g7a25ff40xdnncrl2afjnlcc56dbhqkk43gjah17"; depends=[MASS]; }; + sate = derive2 { name="sate"; version="2.1.0"; sha256="19jd8z1343ajx27b14grjnvxxf38b008fzclv7rcpqqp717ajpnv"; depends=[ellipse MASS]; }; satellite = derive2 { name="satellite"; version="1.0.4"; sha256="0z6wh0nmzxgizd8rzafkq8hkxx9s8lkaqins68697284lxvrbrwr"; depends=[plyr raster Rcpp terra]; }; satin = derive2 { name="satin"; version="1.1.0"; sha256="17knbgy89ljp607mkhs62fx9p6b40iqqzgpxr9karlf07l48c0ya"; depends=[geosphere maps ncdf4 PBSmapping sp splancs]; }; - satres = derive2 { name="satres"; version="1.0.0"; sha256="1kxpb15xbl4f3m9gqmvrad9dqcw0m9l6dxcvbqar743aakwh10sc"; depends=[terra]; }; + satres = derive2 { name="satres"; version="1.1.1"; sha256="0651vv381b5j8zn9gngkqz7asbz3bwrrln57448j2w0qa1lfpq87"; depends=[sf snakecase terra]; }; saturnin = derive2 { name="saturnin"; version="1.1.1"; sha256="0cjp4h1s9ivn17v8ar48mxflaj9vgv92c8p9l2k5bc9yqx9mcs36"; depends=[Rcpp RcppEigen]; }; savonliquide = derive2 { name="savonliquide"; version="0.2.0"; sha256="1f1s2pzvpqrcb68fqk4ivpimwsphnjjx3b42jivw63y7q7ak4azh"; depends=[crayon glue htmltools httr]; }; sawnuti = derive2 { name="sawnuti"; version="0.1.1"; sha256="07abg9gqm59iz05jly47h9jnf8majnhjqss2ybjpa9mx1aclm50b"; depends=[]; }; @@ -16999,31 +17253,30 @@ in with self; { sbmSDP = derive2 { name="sbmSDP"; version="0.2"; sha256="1sl46lqi6w0s7ghv4bywhic56cm2vib3kawprga760m6igargx4y"; depends=[Rcpp RcppArmadillo]; }; sbo = derive2 { name="sbo"; version="0.5.0"; sha256="00pnvpcl6441gf8npf6b6cvzxh0kq4qbfxggjiqdny6lq2nl0d47"; depends=[dplyr Rcpp rlang testthat tidyr]; }; sboost = derive2 { name="sboost"; version="0.1.2"; sha256="1vh3hk15chkyrkpnj4i40542bck9ny45g424bncxdxl9fgxc4nhk"; depends=[dplyr Rcpp rlang]; }; - sbtools = derive2 { name="sbtools"; version="1.2.0"; sha256="1cbsn99sivqiwy2yd847y4aqk289kzrhdq49abnk68bzvx4nz9wa"; depends=[cli curl httr jsonlite keyring mime]; }; + sbtools = derive2 { name="sbtools"; version="1.3.0"; sha256="0vzz7a43ydf56fdxnsqgzil2y5595hlbvyjk1h5z8q8j6b0bjxag"; depends=[cli curl httr jsonlite keyring mime]; }; sbw = derive2 { name="sbw"; version="1.1.5"; sha256="10ks912f4xiy0i484vf24w5zz9n7kxlcy77ikz95p8vr5zlqkvgc"; depends=[MASS Matrix quadprog slam spatstat_geom]; }; sc2sc = derive2 { name="sc2sc"; version="0.0.1-7"; sha256="10rdx92g8clwd9c4zylkzfjrivcc837xz4xxpl771lin70kxnfai"; depends=[]; }; - scAnnotate = derive2 { name="scAnnotate"; version="0.1.1"; sha256="05akid10d1h8636v5pic4kxn0dby3a864yjwbd5rv6zc4wxq1znr"; depends=[glmnet harmony MTPS Seurat]; }; scBio = derive2 { name="scBio"; version="0.1.6"; sha256="1bpizxm9fbxd4sfapi1ayfg5csacb4dvqbvappd79jkq4mrsk12q"; depends=[doSNOW fields foreach LiblineaR limma raster sp]; }; scCATCH = derive2 { name="scCATCH"; version="3.2.2"; sha256="0skd6gsm30bsxr7qi63y890qrx7zq8fvp0ik8jrpwfnsvfgyzx8v"; depends=[Matrix progress reshape2]; }; - scCustomize = derive2 { name="scCustomize"; version="1.1.3"; sha256="1iz1wyl0jpv8yr5319ka3m7yxn7amjqwafrqia2hzgwg4pw72364"; depends=[circlize cli cowplot data_table dplyr forcats ggbeeswarm ggplot2 ggprism ggrastr ggrepel glue janitor lifecycle magrittr Matrix paletteer patchwork pbapply purrr rlang scales scattermore Seurat SeuratObject stringi stringr tibble tidyr]; }; + scCustomize = derive2 { name="scCustomize"; version="2.0.1"; sha256="14g0xspn8ki24c4w5ap3hh63lvjaxv13k7yyym6rhf109yyggj7l"; depends=[circlize cli cowplot data_table dplyr forcats ggbeeswarm ggplot2 ggprism ggrastr ggrepel glue janitor lifecycle magrittr Matrix paletteer patchwork pbapply purrr rlang scales scattermore Seurat SeuratObject stringi stringr tibble tidyr]; }; scDHA = derive2 { name="scDHA"; version="1.2.1"; sha256="075prhak80d6v9hcxsmn3f1mlc4liahh0fdpn8n6hs3ghczrk5cl"; depends=[cluster coro doParallel foreach igraph Matrix matrixStats Rcpp RcppAnnoy RcppArmadillo RcppParallel RhpcBLASctl torch uwot]; }; scDIFtest = derive2 { name="scDIFtest"; version="0.1.1"; sha256="1hq68g7zf7372cach2qfc7l1l8gh5aqkp66k0cxjnrhmvvb1qcax"; depends=[mirt sandwich strucchange zoo]; }; - scDiffCom = derive2 { name="scDiffCom"; version="0.1.0"; sha256="1xgrsfrh06n8hzyqv3j99kjk6l85khg099vjdsf7kx9f5p92iixd"; depends=[data_table DelayedArray future future_apply magrittr Seurat]; }; - scGOclust = derive2 { name="scGOclust"; version="0.1.2"; sha256="0776fp7z4kcdyaa2xk7ycjp6x7x5mcf6wnqghphry2g18ag9r5m9"; depends=[biomaRt dplyr limma magrittr Matrix networkD3 Seurat slanter tibble tidyr]; }; - scGate = derive2 { name="scGate"; version="1.4.1"; sha256="04m9vwdvwylxndyrkq8h5v0w9py5xvznd35arfg1h6y0l4dskwpz"; depends=[BiocParallel dplyr ggplot2 ggridges patchwork reshape2 Seurat UCell]; }; + scDiffCom = derive2 { name="scDiffCom"; version="1.0.0"; sha256="17scb8hhx2d67cbhzxd0l2hzy4sj22x5j9rvc71ba2d958wk4ysa"; depends=[data_table DelayedArray future future_apply magrittr Seurat]; }; + scGOclust = derive2 { name="scGOclust"; version="0.2.0"; sha256="1flidrc83bpkpwbj8nck0kdv09nn9j9hl3lxyd0xwwipqkx00n1h"; depends=[biomaRt dplyr limma magrittr Matrix networkD3 Seurat slanter tibble tidyr]; }; + scGate = derive2 { name="scGate"; version="1.6.0"; sha256="0h12d36zjc6fvxbhkxrzbpvw49z9fgyn1jc941q70ajw1yqi2hhh"; depends=[BiocParallel dplyr ggplot2 ggridges patchwork reshape2 Seurat UCell]; }; scINSIGHT = derive2 { name="scINSIGHT"; version="0.1.4"; sha256="1zkm2n19px3yh3y2z1g5l84ym36ar31i96i54mm7wa0ki179swap"; depends=[igraph RANN Rcpp RcppArmadillo stringr]; }; scISR = derive2 { name="scISR"; version="0.1.1"; sha256="0m4sgbyc05qy1zklw45zj4w4wx0fhiwqr90fc3gpkqq7xkd7ihbw"; depends=[cluster entropy irlba markdown matrixStats PINSPlus]; }; scITD = derive2 { name="scITD"; version="1.0.4"; sha256="0xcx8bvl2w2qa4c68w5hvfx9412qvscjvj8d6hp4q62z58xqy1f8"; depends=[circlize ComplexHeatmap dplyr edgeR fgsea ggplot2 ggpubr ica Matrix mgcv msigdbr NMF RColorBrewer Rcpp RcppArmadillo RcppProgress reshape2 Rmisc rTensor sccore sva]; }; scLink = derive2 { name="scLink"; version="1.0.1"; sha256="0gcwx8kfik1lv949r9d9rqqnvrfkr4bj5cj2i9h1r7l1b76kna74"; depends=[glasso]; }; scMappR = derive2 { name="scMappR"; version="1.0.11"; sha256="0a2jm2a10lawqrlcglaz31gx3kbvjz19f4ynhllkj0px61awxjah"; depends=[ADAPTS downloader ggplot2 gProfileR gprofiler2 GSVA limSolve pbapply pcaMethods pheatmap reshape Seurat]; }; scModels = derive2 { name="scModels"; version="1.0.4"; sha256="01minq4b0pdjlh2r56lvr2ab6r7sp7l9sjz8a9hmx5xmizmygmvr"; depends=[gamlss_dist Rcpp]; }; - scOntoMatch = derive2 { name="scOntoMatch"; version="0.1.0"; sha256="16yw415jbzk28nq050b0xw0rhv35192vnm7ihhi1gpa69aqc0v9y"; depends=[ontologyIndex ontologyPlot purrr]; }; + scOntoMatch = derive2 { name="scOntoMatch"; version="0.1.1"; sha256="1x08qm492yjkbi0srbx6l2z92cd7740iajrvv34hzfdbgjvx289s"; depends=[ontologyIndex ontologyPlot purrr]; }; scPloidy = derive2 { name="scPloidy"; version="0.3.0"; sha256="0wbrpr6zwmhihbqsa5f4mfv05vx7v53bhgr4cx88k0p5jgzb6fs5"; depends=[dplyr GenomicRanges magrittr matrixStats mixtools rlang Rsamtools]; }; scRNAstat = derive2 { name="scRNAstat"; version="0.1.1"; sha256="0yv5np7jafmygg77bwisrha5y2rdb1va906ngzs4zc8mvxr0dvlm"; depends=[clustree dplyr ggplot2 magrittr Matrix patchwork Seurat stringr]; }; scRNAtools = derive2 { name="scRNAtools"; version="1.0"; sha256="0x0lniqhq6q87y08kkkyvmk1g5b8i73hm3h86ba8rcv0v0n7ap9a"; depends=[ALL ConsensusClusterPlus corrplot edgeR foreach ggplot2 ggthemes Hmisc igraph lattice limma PerformanceAnalytics plyr reshape2 Rmisc Rtsne scatterplot3d survival TPEA]; }; scROSHI = derive2 { name="scROSHI"; version="1.0.0.0"; sha256="15mgbgb21wz1gnkw6mxkvckxj345cxi4w5hzwgxfqjvxq9wx6bik"; depends=[limma S4Vectors SingleCellExperiment SummarizedExperiment uwot]; }; scSorter = derive2 { name="scSorter"; version="0.0.2"; sha256="04gnw9i4j8sk3fjh74idk0d6wflw17z1c3afz6wir5pc4y3lzn2j"; depends=[]; }; - scSpatialSIM = derive2 { name="scSpatialSIM"; version="0.1.3.2"; sha256="04pwzpp92w8fldyr11lycygpali4pa8v8xbssgsipn6fk991xkam"; depends=[crayon dplyr ggplot2 ggpubr magrittr pbmcapply proxy spatstat_geom spatstat_random tidyr]; }; + scSpatialSIM = derive2 { name="scSpatialSIM"; version="0.1.3.3"; sha256="09pzdh8zygza3d5ld0j7xm7mks2x158iy1i3p3yrhdhrldx7llfy"; depends=[crayon dplyr ggplot2 ggpubr magrittr pbmcapply proxy spatstat_geom spatstat_random tidyr]; }; scTenifoldKnk = derive2 { name="scTenifoldKnk"; version="1.0.1"; sha256="0d6gcr0qrm7mc36n2lihl7bq9vj40dblqswznbwvxichv8kc5svz"; depends=[MASS Matrix pbapply RSpectra scTenifoldNet]; }; scTenifoldNet = derive2 { name="scTenifoldNet"; version="1.3"; sha256="02ijwi487pfwhgdmpals2snx5dvdnkbkyp9g1yldw12a9v8rz8q7"; depends=[MASS Matrix pbapply RhpcBLASctl RSpectra]; }; scUtils = derive2 { name="scUtils"; version="0.1.0"; sha256="09c4vwrjj4r0nfcwb8q0a243m0v5wa3qisdlcy7ik58gyxp02zv8"; depends=[assertthat dplyr ggplot2 Matrix scales viridis viridisLite]; }; @@ -17033,7 +17286,7 @@ in with self; { scagnostics = derive2 { name="scagnostics"; version="0.2-6"; sha256="0b5fkzhvr1js3l7s9wl12jspyklxm6ri6cn6brf949gfl4bjnnq9"; depends=[rJava]; }; scaleAlign = derive2 { name="scaleAlign"; version="1.0.0.0"; sha256="0340biwz0md6sxq5iq5wiz6q8kcrll80429f1ab9zz88k3fya2s6"; depends=[]; }; scaleboot = derive2 { name="scaleboot"; version="1.0-1"; sha256="1q0bs5f1vgja5gj3id1ny6raja8ljgd8dk50fs1wn90f6080afy7"; depends=[mvtnorm pvclust]; }; - scales = derive2 { name="scales"; version="1.2.1"; sha256="027daznawr9dy0z9s99lh64i4am691hdir01n7gr7vmgpmnkwiar"; depends=[farver labeling lifecycle munsell R6 RColorBrewer rlang viridisLite]; }; + scales = derive2 { name="scales"; version="1.3.0"; sha256="122qyd88qr8cc8h3k46xpygm00inqpm55zdy0b7535958imhygmk"; depends=[cli farver glue labeling lifecycle munsell R6 RColorBrewer rlang viridisLite]; }; scalpel = derive2 { name="scalpel"; version="1.0.3"; sha256="0c8k99i5v2ki2bmcjjr6rfk7y1ds7jlykdwgn5x2zvzpdw7p4vlw"; depends=[gam igraph Matrix protoclust R_matlab]; }; scalreg = derive2 { name="scalreg"; version="1.0.1"; sha256="0kfcgl9cpp6g1qx23s1yrjzn0hi74vmrw567vy9wpsmhk04a5bkx"; depends=[lars]; }; scam = derive2 { name="scam"; version="1.2-14"; sha256="0w9pm52hrky879ibxa96bav9fvz7swg1kbv0jybf3l1mmfm8cl6c"; depends=[Matrix mgcv]; }; @@ -17051,13 +17304,14 @@ in with self; { scatterpie = derive2 { name="scatterpie"; version="0.2.1"; sha256="0wfrckyvy4zw34qdvgg1gwqfdi1xhs63v3gfwa4akm7ifd1canlb"; depends=[dplyr ggforce ggfun ggplot2 rlang tidyr]; }; scatterplot3d = derive2 { name="scatterplot3d"; version="0.3-44"; sha256="1hkfislhzx05y5qqa7pvrils3qf9rhxbf37lkpsjbn9yihs0i70w"; depends=[]; }; scbursts = derive2 { name="scbursts"; version="1.6"; sha256="09yxnq6m35xmp0priavjnh0bdcwkr5hhy7j33cz13xwkrd1cgw5j"; depends=[readxl tibble]; }; - scclust = derive2 { name="scclust"; version="0.2.3"; sha256="06xwdb0mlfqk5238mla13vqfmh5qwayp018rwsfqn1pwns01lr5s"; depends=[distances]; }; + scclust = derive2 { name="scclust"; version="0.2.4"; sha256="0rhr5qnsc0ylgs4gmn3d3d4ah2ijnd24n029vik1f0n4ykszn3np"; depends=[distances]; }; sccore = derive2 { name="sccore"; version="1.0.4"; sha256="11l7xl1ylzmda4i2p1b08a43pvciin2i2sas2n3cj1gmamflkji3"; depends=[dplyr ggplot2 ggrepel igraph irlba magrittr Matrix pbmcapply pROC Rcpp RcppArmadillo RcppEigen RcppProgress rlang scales tibble uwot withr]; }; sccr = derive2 { name="sccr"; version="2.1"; sha256="0cjlzv92b5qrs43d3ry33zcggiqvsqaf8wq4k19ws9lvgh59b62v"; depends=[dplyr]; }; scdensity = derive2 { name="scdensity"; version="1.0.2"; sha256="173xm3bf8vxl30zk4n451al7m003byg9q4d1l1pfyfa4xnv8qdg9"; depends=[lpSolve quadprog]; }; scdhlm = derive2 { name="scdhlm"; version="0.7.2"; sha256="0l7mv125spx1rp2hd9ms1di0f2kbmff7lb7cvp7vcibj2w7y7irh"; depends=[dplyr lmeInfo magrittr nlme readxl rlang tidyselect]; }; scellpam = derive2 { name="scellpam"; version="1.4.5"; sha256="0sgwqpmjwnwvs8s3l4x264kndjsh3k7h5mpxyl0za9s4na3y6s9j"; depends=[cluster memuse Rcpp]; }; scenes = derive2 { name="scenes"; version="0.1.0"; sha256="068x0f9j9apdrv07m4facxxs60axv43q57laypfavxsns3r4dk30"; depends=[cli cookies glue purrr rlang shiny]; }; + scfetch = derive2 { name="scfetch"; version="0.5.0"; sha256="0qyixanc72vang1zsr6v9yfv2j911iniiylw3fcxvykvfxp9zhmv"; depends=[Biobase curl data_table dplyr GEOquery httr jsonlite LoomExperiment magrittr Matrix openxlsx pbapply purrr reticulate rlang rPanglaoDB scater Seurat SingleCellExperiment SummarizedExperiment tibble tidyr]; }; scgwr = derive2 { name="scgwr"; version="0.1.2-21"; sha256="15pwasxkwirr2wwf8w02cy8zx0bqavzyfixjz3m37c1llrhddpka"; depends=[dplyr FNN optimParallel sp spData]; }; schemr = derive2 { name="schemr"; version="0.2.0"; sha256="192dk2b69wlwwkqrkk1n05q8hsn6djxhscjizj3amj4b701xw612"; depends=[apcluster dplyr magrittr OpenImageR purrr stringr]; }; schoRsch = derive2 { name="schoRsch"; version="1.10"; sha256="0bf4lahfzi6dchqfnykh4saiagcka12h82d9mvd1ddv5phmbyi10"; depends=[]; }; @@ -17076,6 +17330,7 @@ in with self; { sciplot = derive2 { name="sciplot"; version="1.2-0"; sha256="097zcgjsv54f6wd8fjwh2xb406j6yrw94v9pcxa0zln1q7fs93vk"; depends=[]; }; scipub = derive2 { name="scipub"; version="1.2.2"; sha256="1k06pmpwpmgiglqhh9ca67m74vb961dczc9394xnwfszq9g3gz1n"; depends=[dplyr forcats gghalves ggplot2 purrr stringr tibble tidyr tidyselect]; }; scistreer = derive2 { name="scistreer"; version="1.2.0"; sha256="03nd4p7ik66v09yv18c0z1bvdnkr5m0axk78yapd2ri80ihmyi3c"; depends=[ape dplyr ggplot2 ggtree igraph parallelDist patchwork phangorn Rcpp RcppArmadillo RcppParallel reshape2 RhpcBLASctl stringr tidygraph]; }; + scitb = derive2 { name="scitb"; version="0.1.7"; sha256="1j62axyd26i6mzyhvcqlfksm225f4zhhxf1spyb68vdzvh4zg1hr"; depends=[ggplot2 MASS nortest reshape2 stringi]; }; sclr = derive2 { name="sclr"; version="0.3.1"; sha256="10pihx35889w509ijbyq5hzslk9n7kakjnfscg7p0dq198nbpyca"; depends=[broom dplyr purrr rlang tibble]; }; scoper = derive2 { name="scoper"; version="1.3.0"; sha256="0y0bqdxr4g929paddrgs8qqxzp0pwsc62kxl6lbzp4l2xmg3j2j2"; depends=[alakazam data_table doParallel dplyr foreach ggplot2 Rcpp rlang scales shazam stringi tidyr]; }; score = derive2 { name="score"; version="1.0.2"; sha256="1p289k1vmc7qg70rv15x05dyb92r7s6315whr1ibi40sqln62a5s"; depends=[msm]; }; @@ -17086,15 +17341,16 @@ in with self; { scoringRules = derive2 { name="scoringRules"; version="1.1.1"; sha256="1qy521jhr5mj7999ncz27f3ggld2rqvgy3y3wznk23772xpgjgrr"; depends=[knitr MASS Rcpp RcppArmadillo]; }; scoringTools = derive2 { name="scoringTools"; version="0.1.2"; sha256="11bxmpqiqqkjyvmyxlnzz7j64jmy1pjw06128vvydmqhjxxyawjh"; depends=[discretization dplyr magrittr sqldf]; }; scoringfunctions = derive2 { name="scoringfunctions"; version="0.0.6"; sha256="05bxqj8pq8halwljsy89l2p8hq8gghvivyhk1078w6yrrn8w18lq"; depends=[]; }; - scoringutils = derive2 { name="scoringutils"; version="1.1.0"; sha256="1a2lvc52x8nvkfa3dgrlh76j27cwz05sbw1cg47kcafv07vjzw2x"; depends=[data_table ggdist ggplot2 lifecycle rlang scoringRules]; }; + scoringutils = derive2 { name="scoringutils"; version="1.2.2"; sha256="1ylw7ql5ayfn6fcxnmmmr3zpvczax6mhmis28r03kwm8val5q233"; depends=[data_table ggdist ggplot2 lifecycle rlang scoringRules]; }; scout = derive2 { name="scout"; version="1.0.4"; sha256="0vr497g7g1xhf75cwjbjsns2fvdzy86iibbf5w0g2xylw82s4lh2"; depends=[glasso]; }; scperturbR = derive2 { name="scperturbR"; version="0.1.0"; sha256="0bddsfms1zaq8hfviw68n5n5mjiwg47hiyzbnnwbimxaamz4rkkb"; depends=[dplyr energy rdist Seurat]; }; - scpi = derive2 { name="scpi"; version="2.2.4"; sha256="0yvxwq429qwf2v0shci8dk6w7rqcz15060ykrpv3wac42jw8qjzz"; depends=[abind CVXR doSNOW dplyr ECOSolveR fastDummies foreach ggplot2 magrittr MASS Matrix purrr Qtools reshape2 rlang stringr tibble tidyr]; }; + scpi = derive2 { name="scpi"; version="2.2.5"; sha256="12wr7kk57qv28kypk5czr0gv2xfib040m8k5047kdgd4fj3i6fhr"; depends=[abind CVXR doSNOW dplyr ECOSolveR fastDummies foreach ggplot2 magrittr MASS Matrix purrr Qtools reshape2 rlang stringr tibble tidyr]; }; scplot = derive2 { name="scplot"; version="0.3.3"; sha256="09a7nj95jwmp99jcx6jb0pqgmb651xmf1zdmwi1qi62142lxqwvx"; depends=[ggplot2 mblm scan]; }; scpoisson = derive2 { name="scpoisson"; version="0.0.1"; sha256="0v8is1y9mqbvcvhqay1a0ycbhfxwxqkxifmbxb0sjzxg02mla65x"; depends=[broom dplyr ggplot2 glmpca magrittr Matrix matrixStats purrr Rdpack Seurat SeuratObject tidyr WGCNA]; }; scqe = derive2 { name="scqe"; version="1.0.0"; sha256="1113zbc2jyq03fh8l1h6yidf25hh5dcqrk6wkk9flqwnbrvfkwrr"; depends=[AER ggplot2]; }; scquantum = derive2 { name="scquantum"; version="1.0.0"; sha256="0v263qxf3qp7hra3l8fyw8a625z9ym2h2zg5b9lsysdiznbi9bww"; depends=[]; }; scraEP = derive2 { name="scraEP"; version="1.2"; sha256="1qkfd4bp3sd3xrh9bdaqwmmvx7f9rvjcch6hi2p387ky04ywwqn4"; depends=[data_table rvest XML xml2]; }; + scrapeR = derive2 { name="scrapeR"; version="0.1.7"; sha256="1zb6v1pxhy8rhqhwwz99fsd38fsw9cdnyp0252m8s7if6in44vrc"; depends=[httr magrittr rvest]; }; scrappy = derive2 { name="scrappy"; version="0.0.1"; sha256="0dckq2pdqabnv5cinfqgbrjxp55x4z81lp8xh4yhyb2cnz9gdsqy"; depends=[magrittr rvest xml2]; }; screenshot = derive2 { name="screenshot"; version="0.9.0"; sha256="14mkm5nsnyxvfzlq2gs9m88xgsvqwjra2j9ax1fx6wya970a1skd"; depends=[dplyr fs imager magrittr purrr rlang tibble]; }; scribe = derive2 { name="scribe"; version="0.3.0"; sha256="02gwv7c107vaphkpr3giz2lqbaabk32fg6yf6zi0sirkp8dph93d"; depends=[]; }; @@ -17104,7 +17360,7 @@ in with self; { scriptexec = derive2 { name="scriptexec"; version="0.3.1"; sha256="0k10x0npdga1nmchzz9xxv0qijnq2n9pb49z1g06bmva1z8wb4wg"; depends=[]; }; scriptloc = derive2 { name="scriptloc"; version="1.0.0"; sha256="0k0dmh833chyvcbw5b7i85m0xgj5kd635h70x5y891jcwdrbccvh"; depends=[]; }; scriptuRs = derive2 { name="scriptuRs"; version="0.1.0"; sha256="1wbvfqcc0raazhdc6pyp93q859ilxfz9rz338p3sb7fjyxvparbl"; depends=[]; }; - scrm = derive2 { name="scrm"; version="1.7.4-0"; sha256="1kn6f0ypkl50jvnxz9sc6nyb0cdcnaccgka984jfsniky16f6sn9"; depends=[Rcpp]; }; + scrm = derive2 { name="scrm"; version="1.7.5"; sha256="195ilhqfcag5zljw5h031vxisy69mn0jjl2n4r3bxirywim1d5vg"; depends=[Rcpp]; }; scrobbler = derive2 { name="scrobbler"; version="1.0.3"; sha256="1f8vcx79yzhy2698xgr7a863hqhqad1kx1zc9xy83bigghsjq1py"; depends=[httr jsonlite]; }; scrollrevealR = derive2 { name="scrollrevealR"; version="0.2.0"; sha256="0k8ffapwxpb25wphm76arma095hrh3wf0gpkx1z6g4rplahf4jxa"; depends=[glue htmltools]; }; scrutiny = derive2 { name="scrutiny"; version="0.3.0"; sha256="0xjyxakfbc6d0fw7ld5myhip9z2rqx3w3m5hg0g8ghx3j1inm3zj"; depends=[cli dplyr glue lifecycle magrittr purrr rlang stringr tibble]; }; @@ -17113,7 +17369,7 @@ in with self; { scs = derive2 { name="scs"; version="3.2.4"; sha256="13r944b9ip078hqwdpzn3jv21zm47d9l2b1f5y6glcj5pxs9iwy3"; depends=[]; }; sctransform = derive2 { name="sctransform"; version="0.4.1"; sha256="0wgimf7qqgnnmyspn2rpb4a8hl570fv0fwh0r0r4qgjlpvwffssz"; depends=[dplyr future future_apply ggplot2 gridExtra magrittr MASS Matrix matrixStats Rcpp RcppArmadillo reshape2 rlang]; }; scuba = derive2 { name="scuba"; version="1.11-1"; sha256="1gmwzwkj0ylaqwz33djrv3hrqmwhr23q53yp94hv04mhijdh9myl"; depends=[]; }; - scutr = derive2 { name="scutr"; version="0.1.2"; sha256="0wq20zvn839iws9qzaknfisr9r2pipdcvxfjvqmk1bw9irfgj3gm"; depends=[mclust smotefamily]; }; + scutr = derive2 { name="scutr"; version="0.2.0"; sha256="0n3lsj6cmkzwg6rc7s75vh54xaddxdin7p3v6269kb0v1brmkbi3"; depends=[mclust smotefamily]; }; sdPrior = derive2 { name="sdPrior"; version="1.0-0"; sha256="0g4crlasnvxz752n3az5jc681jvvj2g87c3a8s2h1i2vh64p5h37"; depends=[doParallel GB2 MASS mgcv mvtnorm pscl]; }; sda = derive2 { name="sda"; version="1.3.8"; sha256="14cpl7zj9aamdwyc8c9s7hnf660srvjv66lpnsm837d4r7k19icv"; depends=[corpcor entropy fdrtool]; }; sdafilter = derive2 { name="sdafilter"; version="1.0.0"; sha256="0y692j25pln46dp6xvaq17fkym0461yqfa6rv5avfw2b240k8jiq"; depends=[glasso glmnet huge POET]; }; @@ -17121,14 +17377,14 @@ in with self; { sdamr = derive2 { name="sdamr"; version="0.2.0"; sha256="1hcgdysa62mrzk2wmy366jpwab65m3qyi8bh7kzgifpwwxh5pv9k"; depends=[car dplyr ggplot2]; }; sdcHierarchies = derive2 { name="sdcHierarchies"; version="0.20.0"; sha256="0s4j1fy80ag03smxibxv6y924q1mvcdchilnjnx4xnyagxx24sl7"; depends=[cli data_table jsonlite Rcpp rlang shiny shinyjs shinythemes shinyTree]; }; sdcLog = derive2 { name="sdcLog"; version="0.5.0"; sha256="0ssjgpfg3z8j9s47nmiw6a5jcsi4pppdxidvzm3sryjz4klallwg"; depends=[broom checkmate cli data_table mathjaxr]; }; - sdcMicro = derive2 { name="sdcMicro"; version="5.7.6"; sha256="050b8i0bl7lykglzw3iy16ind12ddi6jx74rwh3gxishzddgy11d"; depends=[car carData cluster data_table DT e1071 ggplot2 haven knitr MASS prettydoc Rcpp rhandsontable rmarkdown robustbase shiny shinyBS VIM xtable]; }; + sdcMicro = derive2 { name="sdcMicro"; version="5.7.7"; sha256="0q6278ppbip2j9c79x6vjchiygxjqwqj71n8x6rl9676821ivwp0"; depends=[car carData cluster data_table DT e1071 ggplot2 haven knitr MASS prettydoc Rcpp rhandsontable rmarkdown robustbase shiny shinyBS VIM xtable]; }; sdcSpatial = derive2 { name="sdcSpatial"; version="0.5.2"; sha256="0bnq63akzngvf6r9csg11cb98mhwd8ybrqrk4v2i0iiln70sf7b6"; depends=[raster]; }; sdcTable = derive2 { name="sdcTable"; version="0.32.6"; sha256="15jjc25zmxlhh6jvf1ml9q2ngf3blr6c1rarfsx993i4lbb6lg12"; depends=[data_table glpkAPI knitr Matrix progress Rcpp Rglpk rlang sdcHierarchies slam SSBtools stringr]; }; sde = derive2 { name="sde"; version="2.0.18"; sha256="1rk9wqaam21fipsinag3ychfkl6p7fpgbamr0119v8gjgskajxl8"; depends=[fda MASS zoo]; }; sdetorus = derive2 { name="sdetorus"; version="0.1.9"; sha256="186zq6ngii16447sj0r8aw07phq8a431xl77xpp4g3c00v0lxkic"; depends=[colorRamps mvtnorm Rcpp RcppArmadillo]; }; sdm = derive2 { name="sdm"; version="1.1-8"; sha256="130zkhhq1l99r16dii21i87wphb4n10xq70rgimm4x0q7zn0jv5y"; depends=[raster sp]; }; sdmApp = derive2 { name="sdmApp"; version="0.0.2"; sha256="1rfzy3bbdya7amyr43dhhv4cvmrxcan0fv167ldpbf0m9snqrnrx"; depends=[raster shiny sp]; }; - sdmTMB = derive2 { name="sdmTMB"; version="0.4.0"; sha256="00qlbwybdnxk48sfw7s56xzr3jrnh6ysjn9fyfpm8ry1h4rya55n"; depends=[assertthat cli clisymbols fishMod fmesher generics lifecycle lme4 Matrix mgcv mvtnorm nlme RcppEigen rlang TMB]; }; + sdmTMB = derive2 { name="sdmTMB"; version="0.4.1"; sha256="19d7ddvy4gk7s5ngg3qd99hqx5mi0wxv9yfk8rs15hlapb8vy4a9"; depends=[assertthat cli clisymbols fishMod fmesher generics lifecycle lme4 Matrix mgcv mvtnorm nlme RcppEigen rlang TMB]; }; sdmpredictors = derive2 { name="sdmpredictors"; version="0.2.15"; sha256="19znyvz98b3ykwqllzs2sjrw4sd6pd90130ws5d739xgpgsj1zwv"; depends=[R_utils raster terra]; }; sdmvspecies = derive2 { name="sdmvspecies"; version="0.3.2"; sha256="19avkag13ij1k65vqhmvcy8j50j8vrgw4mjc49x8i63w3d4z1wxh"; depends=[psych raster]; }; sdpdth = derive2 { name="sdpdth"; version="0.2"; sha256="1yn8fsjxpbagargf3mv0p23vsgnl64dxfkggrzvfp0ylxsx8nnvc"; depends=[Matrix matrixcalc rCMA Rcpp RcppArmadillo rJava]; }; @@ -17144,7 +17400,7 @@ in with self; { season = derive2 { name="season"; version="0.3.15"; sha256="0f63ichlnj49g0ni9560avr4415iyj5061pixkjmqj83y7bbsz22"; depends=[ggplot2 MASS survival]; }; seasonal = derive2 { name="seasonal"; version="1.9.0"; sha256="0kpmqix7lxlsnhacrhk5aa9gvzng3fg024ngpk5apmhai7m2bp20"; depends=[x13binary]; }; seasonalclumped = derive2 { name="seasonalclumped"; version="0.3.2"; sha256="0a9ryds9l00dw6pr9s6r6fzrby53zz63idjywh127a4ga48jwnq3"; depends=[ggplot2 gridExtra magrittr TTR]; }; - seasonalityPlot = derive2 { name="seasonalityPlot"; version="1.0.1"; sha256="0yksbj2va950k5xzpjnpwchh5kdns09s4mh8qdgl8s8gli8hcjq5"; depends=[dygraphs htmltools magrittr plotrix quantmod zoo]; }; + seasonalityPlot = derive2 { name="seasonalityPlot"; version="1.1.0"; sha256="0y8wv8j8r215j53bx3c7nclxbvcg022f96sc3p2j9nysh3ybibk6"; depends=[dygraphs htmltools lubridate magrittr plotrix quantmod zoo]; }; seasonalview = derive2 { name="seasonalview"; version="0.3"; sha256="1l705yc7ssldsfckbgnvd95sh3zzhpkmf1rr6ar2s60s3wsyly4n"; depends=[dygraphs htmlwidgets openxlsx seasonal shiny shinydashboard xtable xts zoo]; }; seastests = derive2 { name="seastests"; version="0.15.4"; sha256="1xy2hacd57v75y5snhn4al7bi71wr994jy6m2sdr6qzzsd5pbgpc"; depends=[forecast xts zoo]; }; seawaveQ = derive2 { name="seawaveQ"; version="2.0.2"; sha256="1x4vvassal1lwb9xnwisrhlx2maaqxl84h7klfy8yg9x80fdrhsw"; depends=[lubridate plyr reshape2 rms survival]; }; @@ -17157,7 +17413,7 @@ in with self; { secuTrialR = derive2 { name="secuTrialR"; version="1.1.1"; sha256="0i45zhbbvq052yn04j0xg69minclr7ns7f1pqdahx1cmf274pl42"; depends=[dplyr haven lubridate magrittr purrr readr readxl rlang stringr tibble tidyr]; }; secure = derive2 { name="secure"; version="0.6"; sha256="1i0csl90w4qvhpnrxwrdhxzlmjw7hn30py36r41cd28igycz2bw3"; depends=[MASS Rcpp RcppArmadillo]; }; sedproxy = derive2 { name="sedproxy"; version="0.7.5"; sha256="1n5970pbdc0zl9vh0fslirlww56as5c090mnhzbic1fdzkhli245"; depends=[dplyr ggplot2 mvtnorm rlang tidyr]; }; - see = derive2 { name="see"; version="0.8.0"; sha256="1vdxhv00drnbg6azbrk7g8r4j45dbzb8h8zgzra5mqbbc7k8pdk2"; depends=[bayestestR correlation datawizard effectsize ggplot2 insight modelbased parameters performance]; }; + see = derive2 { name="see"; version="0.8.1"; sha256="1br3a28cjsr214ms5ij8rr9an0wp0151i2wa8a4h2hjcjjqcrz7m"; depends=[bayestestR correlation datawizard effectsize ggplot2 insight modelbased parameters performance]; }; seeclickfixr = derive2 { name="seeclickfixr"; version="1.1.0"; sha256="1agsqq2msrqrssffc6liyjjs6nqm90xy2inlcjbkdac5dhinjc4n"; depends=[jsonlite RCurl]; }; seecolor = derive2 { name="seecolor"; version="0.2.0"; sha256="1qfiq8dmakban9mh7rizm54risq48vw1ck7i5yl48ggqmr47mvzf"; depends=[crayon dplyr fansi ggplot2 magrittr purrr rstudioapi stringr]; }; seedCCA = derive2 { name="seedCCA"; version="3.1"; sha256="01v8hwhw5pap69n11czn0ma22vakhi3kfbly0rzasw9fsvf66xhg"; depends=[CCA corpcor]; }; @@ -17165,7 +17421,7 @@ in with self; { seedr = derive2 { name="seedr"; version="0.3.0"; sha256="15drbc0iplb97a2sym6jnrwij7ak5qckcw98n3m65x45apjwdmhq"; depends=[binom data_table]; }; seedreg = derive2 { name="seedreg"; version="1.0.3"; sha256="07wg48pn2v3wcwf5a34b4hc0s1flfpphrylr4d9bayaxsvi3k0xk"; depends=[boot car crayon dplyr drc emmeans ggplot2 gridExtra hnp multcomp multcompView sf stringr]; }; seeds = derive2 { name="seeds"; version="0.9.1"; sha256="0adk7y5ripg78bwkdgnlfwq9w9h6mlpdrikgbnn5z8az2qahc0in"; depends=[callr coda Deriv deSolve dplyr ggplot2 Hmisc MASS matrixStats mvtnorm pracma R_utils Ryacas statmod tidyr]; }; - seeker = derive2 { name="seeker"; version="1.1.3"; sha256="0vq7spb0wdlzgzgljqsrf7ym6in8vbis2607fj2gpxm0643gff3k"; depends=[affy AnnotationDbi BiocManager biomaRt checkmate curl data_table foreach GEOquery glue jsonlite qs R_utils RCurl readr sessioninfo tximport withr yaml]; }; + seeker = derive2 { name="seeker"; version="1.1.4"; sha256="0wnrbzcfg7a32qs7mg9zlgjj72124slirilzjhpp0fsn0qmw2vks"; depends=[affy AnnotationDbi BiocManager biomaRt checkmate curl data_table foreach GEOquery glue jsonlite qs R_utils RCurl readr sessioninfo tximport withr yaml]; }; seer = derive2 { name="seer"; version="1.1.8"; sha256="13r26iyciq9wbzn4r3447s4j4m6k5sdymp704i6hkf0fphv4340c"; depends=[dplyr forecast forecTheta furrr future magrittr purrr randomForest stringr tibble tsfeatures urca]; }; seewave = derive2 { name="seewave"; version="2.2.3"; sha256="13c48sn453yp4j0ap8slnnr2gfhlxasz926p2pazkrg817w7m28z"; depends=[tuneR]; }; seg = derive2 { name="seg"; version="0.5-7"; sha256="165hl55vzyf3jqlykqji37p2syzhc8dxdjxd4wwr562qnlymzszx"; depends=[sp splancs]; }; @@ -17175,10 +17431,10 @@ in with self; { segen = derive2 { name="segen"; version="1.1.0"; sha256="1l60rb1w0rfp1rv5favi4yxzyqs1nb1881mcz66xv789r3awhp11"; depends=[entropy fANCOVA fastDummies ggplot2 greybox imputeTS lubridate modeest moments narray philentropy purrr readr Rfast scales tictoc]; }; segmag = derive2 { name="segmag"; version="1.2.4"; sha256="1i717xg1z7s35pkwzywgjf9wx7zj9xksv0k87h7p1q62y073qbqm"; depends=[plyr Rcpp]; }; segmenTier = derive2 { name="segmenTier"; version="0.1.2"; sha256="01xbcddinjbkbqkwq2lnsxd3gw8fxys58p498dc2lw8psz3g2wgc"; depends=[Rcpp]; }; - segmented = derive2 { name="segmented"; version="1.6-4"; sha256="14ci6hd5xlrz22gvnvy2fzpnp50fbds3wpx4mf2fgi5i7sp0hb27"; depends=[MASS nlme]; }; + segmented = derive2 { name="segmented"; version="2.0-1"; sha256="0r3l39sihncrmhs6y3nydr6izp5ss86rfwjyhwf2x0clvqq2gkz9"; depends=[MASS nlme]; }; segmentr = derive2 { name="segmentr"; version="0.2.0"; sha256="0q5kxxiw0akpk7w2a2l9zp7v4pvqblzdvrld5fjyl5f6h8hsb40z"; depends=[foreach glue Rcpp]; }; segmetric = derive2 { name="segmetric"; version="0.3.0"; sha256="1cpkak3d91xjz6z4ls29ys1m5gmkqm7pq86vs88xy51z0av4kji7"; depends=[magrittr sf units]; }; - segregation = derive2 { name="segregation"; version="1.0.0"; sha256="170nikyari6kzzplkp8siv24278bjf4vv3w893yrlmqr0hfvw9gb"; depends=[checkmate data_table Rcpp RcppProgress]; }; + segregation = derive2 { name="segregation"; version="1.1.0"; sha256="1l2dlqva58l9glpsn1bflbggk0645zhsr3a1n1ydikp7q54wf72m"; depends=[checkmate data_table Rcpp RcppProgress]; }; segregatr = derive2 { name="segregatr"; version="0.3.0"; sha256="1n6fdq16lymfk49z75y2d9s8n9l0v8i0987cfnxigqz8h5jyzm6x"; depends=[pedprobr pedtools]; }; sehrnett = derive2 { name="sehrnett"; version="0.1.0"; sha256="0nsgaf79cs2fnjb42vzlmbi92290vrlp5bpgg6mnik3yh5fq2ndr"; depends=[DBI dplyr magrittr purrr RSQLite tibble]; }; seismic = derive2 { name="seismic"; version="1.1"; sha256="0sxvbknx5ws04nzvj1p9wimrs5swzzds613sflf13v9757vm7pxf"; depends=[]; }; @@ -17192,38 +17448,41 @@ in with self; { selectiveInference = derive2 { name="selectiveInference"; version="1.2.5"; sha256="07kzpvdmflca1sriqfzn20f84fx2b9kwwiqm91lqjpx854bsx5kh"; depends=[adaptMCMC glmnet intervals MASS Rcpp survival]; }; selectr = derive2 { name="selectr"; version="0.4-2"; sha256="09y1n3iy297g49xlpl7xrjpwgnm57pskx5991lyfcpizbz8ax22m"; depends=[R6 stringr]; }; selectspm = derive2 { name="selectspm"; version="0.6"; sha256="02gzbzjdr8ij9gsrvx8wmz9q8r35zjniwcri2hmiz57h0svybvll"; depends=[ecespa spatstat spatstat_explore spatstat_geom spatstat_model spatstat_random]; }; - selenider = derive2 { name="selenider"; version="0.1.2"; sha256="1h0w8y0sqx9q9df64qik04sklgrpc1a0kjkqjr8isdy4bf6zpcxg"; depends=[cli coro curl lifecycle prettyunits processx rlang vctrs withr]; }; + selenider = derive2 { name="selenider"; version="0.2.0"; sha256="1nq61p2vv6d57kqhq3dkl76j12xxbigbiqvxkpkrx0blz7f63ydr"; depends=[cli coro curl lifecycle prettyunits processx rlang vctrs withr]; }; + selenium = derive2 { name="selenium"; version="0.1.3"; sha256="1v1bh9a1ybzwyzfsy7q82cjjaz2011zi9i80y275ayjwdsw1rfyf"; depends=[httr2 jsonlite lifecycle processx R6 rappdirs rlang]; }; seleniumPipes = derive2 { name="seleniumPipes"; version="0.3.7"; sha256="1krpzh2gy3yl07c2n1d8q21xjc2qcv5ac1kv7212710bxkdyfad6"; depends=[httr jsonlite magrittr whisker xml2]; }; selfingTree = derive2 { name="selfingTree"; version="0.2"; sha256="18ylxmg2ms4ccgm4ahzfl65x614wiq5id7zazjjz5y75h8gs7gzj"; depends=[foreach]; }; sem = derive2 { name="sem"; version="3.1-15"; sha256="05hk72zxvyv6kkjhk5y6qw253c64108az7030z8j1sz8wq03n0md"; depends=[boot MASS mi]; }; semEff = derive2 { name="semEff"; version="0.6.1"; sha256="0vqvmjp9b9qcl0l3gbxijp73qmcy0czdgc0hq2mr129l7qshigla"; depends=[boot gsl lme4]; }; semPlot = derive2 { name="semPlot"; version="1.1.6"; sha256="0s9bp4pfsllg1k4x8a36yw82fw432dyz0xvmvi8dw9l12q3jkx8i"; depends=[colorspace corpcor igraph lavaan lisrelToR OpenMx plyr qgraph rockchalk sem XML]; }; - semPower = derive2 { name="semPower"; version="2.0.1"; sha256="0i2lzkg4j3igm249y0mpdbd9ff9b33lwgy0n015h43jjy9qmgp78"; depends=[]; }; + semPower = derive2 { name="semPower"; version="2.1.0"; sha256="17smfaslw1nnps3ibkqjqdklwd1k7ckvl4zqngvv78r40jcmq6xv"; depends=[]; }; semTable = derive2 { name="semTable"; version="1.8"; sha256="0qr420rnz59q8arf6x05iy1zyh7pv31ldi2rsw1j2a00fbpp4ndf"; depends=[kutils lavaan plyr stationery xtable]; }; semTools = derive2 { name="semTools"; version="0.5-6"; sha256="1wnakz76c4mgkwvx3iycmvgrzqys860jg9zpkba0ln5c08ycw8pm"; depends=[lavaan pbivnorm]; }; + semantic_assets = derive2 { name="semantic.assets"; version="1.1.0"; sha256="000kgsbrgw8dlc0zi3f85g87xhpkzi8qbkrj717a076hr3h1bms7"; depends=[htmlwidgets]; }; semantic_dashboard = derive2 { name="semantic.dashboard"; version="0.2.1"; sha256="0518pdxgjjv8ql1aaysk64pv1pa01bbg3s7qdibw1v0c6pcf3adb"; depends=[checkmate glue htmltools shiny shiny_semantic]; }; semdrw = derive2 { name="semdrw"; version="0.1.0"; sha256="16hm1ifgspnxnlf3rfg5ylmql2fq91ig8nc5953ggyhfrjwbqx15"; depends=[dplyr lavaan psych semPlot semTools shiny shinyAce]; }; semds = derive2 { name="semds"; version="0.9-6"; sha256="10kvcmcy6qa2r5sram6azqgzl528rghfxgw2f2bq2fvhhq127dzq"; depends=[minpack_lm pracma]; }; - semfindr = derive2 { name="semfindr"; version="0.1.5.4"; sha256="0rnv8aifwsfimfwpd2mf5ihqb6wjb3kcrgxhxkihbk9ds9kvj11i"; depends=[ggplot2 ggrepel lavaan Matrix rlang]; }; + semfindr = derive2 { name="semfindr"; version="0.1.6"; sha256="0a51bpc4m9hq9kyyiibm8gi09lcrjmjw5i1biqnyfdii69yaf2w0"; depends=[ggplot2 ggrepel lavaan Matrix rlang]; }; semgram = derive2 { name="semgram"; version="0.1.0"; sha256="0l5n176mhjkn5kcjd1kfq9s897rg510m1acnmjxcaw0kmmhi4ggs"; depends=[data_table rsyntax stringr]; }; semhelpinghands = derive2 { name="semhelpinghands"; version="0.1.9"; sha256="03y571fvc2cglqsci5ibg178bdc9pg1w8n0kk2b5ir65kyqsqbih"; depends=[boot ggplot2 ggrepel lavaan rlang]; }; semiArtificial = derive2 { name="semiArtificial"; version="2.4.1"; sha256="0zsn3r5n7n3dsa02i194lr6ail7mizq9xp8x3kc5k17z4ckcfysd"; depends=[cluster CORElearn flexclust fpc ks logspline MASS mcclust nnet robustbase RSNNS StatMatch timeDate]; }; semicmprskcoxmsm = derive2 { name="semicmprskcoxmsm"; version="0.2.0"; sha256="00nxmyp4g1pxzqrw3zd5il92vinzpy12wnjnpm33nbh4wx2i5356"; depends=[fastGHQuad ggplot2 Rcpp survival twang]; }; + semidist = derive2 { name="semidist"; version="0.1.0"; sha256="0bgl7z78psd2b3v4c4fzhq0r8w0zfn408ji21cw1x7h87dg70qr2"; depends=[energy FNN furrr purrr Rcpp RcppArmadillo]; }; seminr = derive2 { name="seminr"; version="2.3.2"; sha256="1385wwh7b0fq4jqm6ragdywwafdidq4scbljzbdpvm3wis07abqv"; depends=[DiagrammeR DiagrammeRsvg glue knitr lavaan rmarkdown testthat webp]; }; - semlbci = derive2 { name="semlbci"; version="0.10.3"; sha256="0s85i82yfa305j7az775n41qn17z197invgas06nj09yk0v87jni"; depends=[ggplot2 ggrepel lavaan MASS nloptr pbapply rlang]; }; + semlbci = derive2 { name="semlbci"; version="0.10.4"; sha256="07qm89a0hcbp0w6mly6gs0212pczai22bfjy61c4b1q8i3a3bj8x"; depends=[ggplot2 ggrepel lavaan MASS nloptr pbapply rlang]; }; semmcci = derive2 { name="semmcci"; version="1.1.3"; sha256="18q67mynvms3gxhsm5r0ypb06s059yy5qn1ygnll1qzqcd94wyx2"; depends=[lavaan mice]; }; semmcmc = derive2 { name="semmcmc"; version="0.0.6"; sha256="13asqiw3zazh9k3p39582a0bzm00gmagls2w76kvpygilj4r5391"; depends=[MASS msm]; }; semnar = derive2 { name="semnar"; version="0.8.1"; sha256="18c509yh52sdmvm60p0kzyz86fmzi0by4gnb2jw8nppv8qlnz6zb"; depends=[jsonlite leaflet lubridate parsedate urlshorteneR]; }; semnova = derive2 { name="semnova"; version="0.1-6"; sha256="1vghf8gy0vahwn3nq752wm0rbj33jdy69yqjzin94sk8xa42d0wi"; depends=[lavaan MASS Matrix]; }; semptools = derive2 { name="semptools"; version="0.2.10"; sha256="15rzkavr3njaln9mgn93ypbxw93prskvxw1s0865xqp58mh14k8y"; depends=[lavaan rlang semPlot]; }; semsfa = derive2 { name="semsfa"; version="1.1"; sha256="1k6i1m4r9y7j85rlrsgfjm8w15ax4xgf70xyvqwsszmf9950ldxx"; depends=[doParallel foreach gamlss iterators mgcv moments np]; }; - semtree = derive2 { name="semtree"; version="0.9.18"; sha256="0d3qrv9461kgcgy3m2rsld792him157xzmmv71qrlhkjcs4h5lb6"; depends=[bitops clisymbols cluster crayon data_table digest future_apply ggplot2 lavaan OpenMx plotrix rpart rpart_plot sandwich sets stringr strucchange tidyr zoo]; }; + semtree = derive2 { name="semtree"; version="0.9.19"; sha256="0jasb4r07wv030isgxbbnaa9av2sm62qdzi4fljy2pgf94dx2x6l"; depends=[bitops clisymbols cluster crayon ctsemOMX data_table expm future_apply ggplot2 gridBase lavaan OpenMx rpart rpart_plot sandwich stringr strucchange tidyr zoo]; }; semver = derive2 { name="semver"; version="0.2.0"; sha256="10wpkyms2cix3bsin2q0qhkbl445pwwpa5gm2s4jjw1989namkxy"; depends=[assertthat Rcpp]; }; semverutils = derive2 { name="semverutils"; version="0.1.0"; sha256="0y3zh8n8bgs3ag8yy9cnp0i0xrn0iqflcbrya70glyb40148w9sw"; depends=[foreach R6]; }; - sen2r = derive2 { name="sen2r"; version="1.5.5"; sha256="0j5khff3hix6zm1ybiaj9vhjs2fzbljzcz2q7h1pi9ysrwwdrw3i"; depends=[data_table doParallel foreach geojsonio httr jsonlite raster RcppTOML sf stars XML]; }; sendgridr = derive2 { name="sendgridr"; version="0.6.1"; sha256="1lw17lhd3iwkp5mcbpwvwhlzgwk1nbz7xxic8fid8i22z1js22gc"; depends=[base64enc cli emayili httr jsonlite keyring magrittr usethis]; }; sendigR = derive2 { name="sendigR"; version="1.0.0"; sha256="0zc9hbxfvgb9dgmyqj5dsm2pcfykx6sk3wjcbxmpk7shyb34b6yl"; depends=[cicerone data_table DescTools dplyr DT ggplot2 haven Hmisc htmltools magrittr parsedate plotly readxl reticulate RSQLite shiny shinydashboard sjlabelled stringr xfun]; }; sendmailR = derive2 { name="sendmailR"; version="1.4-0"; sha256="1balci88r2ci51xdh5zaqm3ss3vnry8pbkx2qngppc7n2gy932sv"; depends=[base64enc]; }; + sensR = derive2 { name="sensR"; version="1.5-3"; sha256="0lmy7ivjm4plb7n6mf8ycv44ir34f82s3a7wamxj3w6v1n653ji6"; depends=[MASS multcomp numDeriv]; }; sense = derive2 { name="sense"; version="1.0.0"; sha256="09idl88n6jlgbn5apgk0vr1bwmqi624ikv1qfx7hvyi79ixg49f4"; depends=[bbotk data_table forcats lubridate Metrics mlr3 mlr3filters mlr3learners mlr3pipelines mlr3tuning mlr3viz paradox purrr readr tictoc visNetwork]; }; sensemakr = derive2 { name="sensemakr"; version="0.1.4"; sha256="1bwc4m9fz250iyq5rl63ncgnb5f9490aas8gp51r7yljagq584va"; depends=[]; }; sensiPhy = derive2 { name="sensiPhy"; version="0.8.5"; sha256="1kjkdklva5wzmw071gbn1v9g5cf0wzmvwgy5y0dgi530v6byaw8j"; depends=[ape caper geiger ggplot2 phylolm phytools]; }; @@ -17244,6 +17503,7 @@ in with self; { sentimentr = derive2 { name="sentimentr"; version="2.9.0"; sha256="0i0lg2fl079wjv30lpqcxhx62miqakb9kzwwhrr4c18kl0bxbaav"; depends=[data_table ggplot2 lexicon stringi syuzhet textclean textshape]; }; sentometrics = derive2 { name="sentometrics"; version="1.0.0"; sha256="06qvwfgshr70n1qgf2zqjvycwwrak8d5hfyn3v5k2qzkfaxkihmm"; depends=[caret data_table foreach ggplot2 glmnet ISOweek quanteda Rcpp RcppArmadillo RcppParallel RcppRoll stringi]; }; sentopics = derive2 { name="sentopics"; version="0.7.2"; sha256="0gi52lxkmhbhlsbpamwcrji1y664lrwk3k0pigc2gad3za9rdimc"; depends=[data_table quanteda Rcpp RcppArmadillo RcppHungarian RcppProgress]; }; + sentryR = derive2 { name="sentryR"; version="1.1.2"; sha256="08k4ws4jrd50ymkp7v0i5jjss5brqxyxr36x1jnyqw1nzmchas5x"; depends=[httr jsonlite stringr tibble uuid]; }; separationplot = derive2 { name="separationplot"; version="1.4"; sha256="1dvm073mckn6mkyf6fvclc8glsr8d3p2413x5i91w00hphm2lg8z"; depends=[foreign Hmisc MASS RColorBrewer]; }; sepkoski = derive2 { name="sepkoski"; version="0.0.1"; sha256="1jx1ilbz7md501035vklk5bsw8krg8dn18pwkqynsacqy8wjwl2s"; depends=[]; }; seqCBS = derive2 { name="seqCBS"; version="1.2.1"; sha256="176ggpdcgmpsjixmz0ldknyd0vw120kjyrid3bq2bn4cgkwzb74z"; depends=[clue]; }; @@ -17254,39 +17514,40 @@ in with self; { seqgendiff = derive2 { name="seqgendiff"; version="1.2.3"; sha256="0vyrs4i3q3lyqx0b1as7h2rm3s5kbapq6jxzag8dwhf0ch7yz8gv"; depends=[assertthat cate clue irlba matchingR pdist sva]; }; seqhandbook = derive2 { name="seqhandbook"; version="0.1.1"; sha256="0pr4h19g4sa9g7x3di3k18abmabn6ywigdhx2h4b5y88zcnizfam"; depends=[TraMineR]; }; seqimpute = derive2 { name="seqimpute"; version="1.8"; sha256="1vivs790zbwm8c7fwifz0nj0n9wzjmr8whz0f4pwp44gvcickxwn"; depends=[Amelia cluster dfidx doRNG doSNOW dplyr foreach mice mlr nnet plyr ranger rms stringr swfscMisc TraMineR]; }; - seqinr = derive2 { name="seqinr"; version="4.2-30"; sha256="0jzfbzai2r5bprynq337s1a4k66m34p5k9nzzmbyzvk7719zxy7s"; depends=[ade4 segmented]; }; - seqmagick = derive2 { name="seqmagick"; version="0.1.6"; sha256="1xdi18jsns1m4sxdy4iagrfwz7mkw0182ir0b0db5r9r7xxjr1sg"; depends=[Biostrings magrittr]; }; - seqminer = derive2 { name="seqminer"; version="9.1"; sha256="0vdprasxy4dc9p5k43xgcmi0q50iapgcam43qzbh1kr0vi6fgqkr"; depends=[]; }; + seqinr = derive2 { name="seqinr"; version="4.2-36"; sha256="09dj2k5mi6xylsihnwbmdd8f4qg855gyh7yvz9gamam7j6h646lk"; depends=[ade4 segmented]; }; + seqmagick = derive2 { name="seqmagick"; version="0.1.7"; sha256="1rdq24192yl7w0jsnw1zhj7qzi8qb08dw95iyxyf0rm2q34q1kwm"; depends=[Biostrings magrittr yulab_utils]; }; + seqminer = derive2 { name="seqminer"; version="9.3"; sha256="07dig3ydybmi55qy1zpkxpw568midgc1bzdl3k36734yqnsp2sjs"; depends=[]; }; seqmon = derive2 { name="seqmon"; version="2.4"; sha256="1aqrg9aqvsabg5mm9jfj5vaxxaapfs1qw3yyzbx7vsspcgjdhyca"; depends=[]; }; seqtest = derive2 { name="seqtest"; version="0.1-0"; sha256="1bdfww9szh7h278id5xpfc39mxkcix3yvsdwc68wx3q3x0wxhqhq"; depends=[]; }; seqtrie = derive2 { name="seqtrie"; version="0.2.5"; sha256="1bawix2b1m4pqxxljf8ljl44x37px9snr9q1x9hz6c0dy6ipwlij"; depends=[BH R6 Rcpp RcppParallel]; }; - sequoia = derive2 { name="sequoia"; version="2.7.2"; sha256="0slh9k3blxpfj8rrln85rxq507fqygwmvclqhnp2dsrmp9z4pj74"; depends=[plyr]; }; + sequoia = derive2 { name="sequoia"; version="2.8.3"; sha256="0dd6haiimdf77mzx163simhn0dc57nmgagj914ypbynf2g19yv24"; depends=[plyr]; }; sergeant = derive2 { name="sergeant"; version="0.9.1"; sha256="0mgrrlny1qfddznyc34awh8vkbjnyskbyqrxszdhsm2c5wgp2nwh"; depends=[bit64 DBI dbplyr dplyr htmltools httr jsonlite magrittr purrr readr scales stringi tibble]; }; serial = derive2 { name="serial"; version="3.0"; sha256="1y1gj0lcdn5apiv6c6arks6pqhsbvnrfym6n2izjarx2c27ijrjj"; depends=[]; }; - seriation = derive2 { name="seriation"; version="1.5.1"; sha256="0q52lvcxgiqs1x0vyjrahkj8mdxc9s3514064fsqgwns4s03j1aa"; depends=[ca cluster colorspace foreach gclus MASS qap registry TSP vegan]; }; + seriation = derive2 { name="seriation"; version="1.5.4"; sha256="17rk4674r5knfgqyik9gbz6yj42qv6h79j2prw79glc1ym99qcyj"; depends=[ca cluster colorspace foreach gclus MASS qap registry TSP vegan]; }; serieslcb = derive2 { name="serieslcb"; version="0.4.0"; sha256="1ip4k2xzg06hwsni62ai1whs1zzhwlf94507inpfpqz3jmmafrhq"; depends=[gplots shiny]; }; serp = derive2 { name="serp"; version="0.2.4"; sha256="0hd25rxknj636ssy2289xjvq5fflp2p561yb9w0siqihfc7cfjpc"; depends=[crayon ordinal]; }; serpstatr = derive2 { name="serpstatr"; version="0.2.1"; sha256="09yzxkwgargd42f0bngv6jzhd8arzbvwj2js7lb9yf7vhjq1xv5f"; depends=[httr]; }; serrsBayes = derive2 { name="serrsBayes"; version="0.5-0"; sha256="1w8fs9k4zhy0hwkm30dvi360n28cl2gn9vdqaak64g0nlvb9jy1w"; depends=[Matrix Rcpp RcppEigen truncnorm]; }; servosphereR = derive2 { name="servosphereR"; version="0.1.1"; sha256="0m1fjd3f1s2ss54xmcrm3p0c33hhi2dj0vim790g4y0mw2aicc8l"; depends=[data_table dplyr magrittr purrr rlang]; }; - servr = derive2 { name="servr"; version="0.27"; sha256="1iaqah3896660d609fb6960x3mg17jak3j5akmmli0z4pdb3rhh1"; depends=[httpuv jsonlite mime xfun]; }; + servr = derive2 { name="servr"; version="0.28"; sha256="10nl6aal2kr0k1j7yfpggcxpjxby6z5hhc6wb4nkqhy2w5qi6g26"; depends=[httpuv jsonlite mime xfun]; }; sesem = derive2 { name="sesem"; version="1.0.2"; sha256="0b1xzv38wpkhhlq87xrvlh45b8ksbi8bg4ar5hrf8gxa19r9rmi5"; depends=[gplots lavaan mgcv]; }; sessioninfo = derive2 { name="sessioninfo"; version="1.2.2"; sha256="1jy7n37qnrb4fgzmn8s8yf7kv29yw27x8zklwf8qdb2kgj2q6qpm"; depends=[cli]; }; set = derive2 { name="set"; version="1.2"; sha256="0f36dp9k0nxp1amsd7ybwgbv0vxvgd1kns7cbfsbsh0kljxyplzp"; depends=[do]; }; setRNG = derive2 { name="setRNG"; version="2022.4-1"; sha256="09089vr5x8snwxh38kdhgpjl3jl7zrk056f6f9a2jg5lsrmnxh31"; depends=[]; }; setartree = derive2 { name="setartree"; version="0.2.1"; sha256="13j0shmnnwnbkzgl1wnirvfd9yi29smn3a5cjxg5xg89bjh77wc6"; depends=[generics]; }; - sets = derive2 { name="sets"; version="1.0-24"; sha256="1jfaxdyr3w5p086yh7n6661dipc4rx6ak92hp6gv13j1r7sk6mz7"; depends=[]; }; + sets = derive2 { name="sets"; version="1.0-25"; sha256="1x14q29jjmrs5ldbjc7pxp5pr52j3dw6zr9k5qvz4ycniwhnk92w"; depends=[]; }; setter = derive2 { name="setter"; version="0.0-1"; sha256="10fwrx8yysp99rrkbnn3rbz79vyzr2h3p7zxxlqapw1k2lllp0r5"; depends=[assertive_base]; }; settings = derive2 { name="settings"; version="0.2.7"; sha256="1i9ij5k8p2v9gxr48vas8hj337mbyx9c4ywv9bbdwkz6kzah46k5"; depends=[]; }; sever = derive2 { name="sever"; version="0.0.7"; sha256="10jckf6q31blsl1yhs5f1mx7b8sm8sqb86iakcvaslf651ijx81m"; depends=[cli htmltools shiny]; }; sewage = derive2 { name="sewage"; version="0.2.5"; sha256="171rd59w90q29a9ywdx5225gw6m57bz9rcj25ql38jk62xdmrx69"; depends=[cli DiagrammeR glue]; }; - sf = derive2 { name="sf"; version="1.0-14"; sha256="1xrrqd91601lcd83zzwksb4ampy1j8vf8f6941csk89psm45clwb"; depends=[classInt DBI magrittr Rcpp s2 units]; }; + sf = derive2 { name="sf"; version="1.0-15"; sha256="0b9whfi709gjkzslkrkm8ki1yz5az6vrv5b1l2w712sjqy8r47f8"; depends=[classInt DBI magrittr Rcpp s2 units]; }; sfaR = derive2 { name="sfaR"; version="1.0.0"; sha256="1c7rnnsmdlhby765avb8134f7424qf0b8gdl5q6vz3ialalfg49d"; depends=[cubature fastGHQuad Formula marqLevAlg maxLik mnorm nleqslv plm qrng randtoolbox sandwich texreg trustOptim ucminf]; }; sfadv = derive2 { name="sfadv"; version="1.0.1"; sha256="1rfpm6km5pckwhqgpvidm6qsj5sjdaqqj5b0sgvpslivfa4c80cr"; depends=[gmm minpack_lm]; }; sfarrow = derive2 { name="sfarrow"; version="0.4.1"; sha256="1hslyha1w5x1ncawbwbx792cqa3031v26g9lssmb0n1hihzvfp8g"; depends=[arrow dplyr jsonlite sf]; }; sfc = derive2 { name="sfc"; version="0.1.0"; sha256="0cm4mfcfd9bhf2j5fppsihzrfipnldb6q3xradd88z9pwgrkfx2a"; depends=[dplyr sna tidyr triangle zoo]; }; sfcr = derive2 { name="sfcr"; version="0.2.1"; sha256="05ip1z6rh0k7az0y7nwp9c6rv1s53i0i698yfhx46lfnhzz87anf"; depends=[dplyr expm forcats igraph kableExtra magrittr purrr Rcpp RcppArmadillo Rdpack rlang rootSolve stringr tibble tidyr tidyselect vctrs]; }; - sfdct = derive2 { name="sfdct"; version="0.1.0"; sha256="0p3ipp6x8vnsi94078n098yk9wglnawvzh19imcgk2c1l5lazwgf"; depends=[dplyr RTriangle sf sp tibble]; }; + sfd = derive2 { name="sfd"; version="0.1.0"; sha256="0zffbjzdzgvz7vj1wn7j7sqmnsvskkn94w7lkjxmaahd62xdh6v3"; depends=[cli rlang tibble]; }; + sfdct = derive2 { name="sfdct"; version="0.3.0"; sha256="1v86s8nb021swfq53jmj3vjcyjkzm8aqjlw55xjjxsk29rmq4694"; depends=[dplyr RTriangle sf sp tibble]; }; sfdep = derive2 { name="sfdep"; version="0.2.3"; sha256="18m6lvkkgmyq7x335bhj5arv45k9093ph1y4wlh1lviwv8r3phf5"; depends=[cli rlang sf spdep]; }; sfheaders = derive2 { name="sfheaders"; version="0.4.3"; sha256="0j23irx9gmcvxkcsixvyf8xhbjv2fjsbdz5xbx08ab6yjxr1p8d3"; depends=[geometries Rcpp]; }; sfhotspot = derive2 { name="sfhotspot"; version="0.8.0"; sha256="17vlayqqhv59p9mhrxzxs5r6gfqd6wyyi1k6p05n2sd9c06jzadb"; depends=[ggplot2 rlang sf SpatialKDE spdep tibble]; }; @@ -17303,7 +17564,7 @@ in with self; { sgee = derive2 { name="sgee"; version="0.6-0"; sha256="055iydainzywb1s5id5rl9i94dj5arr9b6qz15p8wps49vm2mlp3"; depends=[copula mvtnorm]; }; sgeostat = derive2 { name="sgeostat"; version="1.0-27"; sha256="1iq9p2jk8bpv1h853a1l91d5c5dxnhkk3cmkd01siqqvj04hv4vb"; depends=[]; }; sglOptim = derive2 { name="sglOptim"; version="1.3.8"; sha256="15bkkvgp9v9vsp65wps48g3c2fa0fj1025hbrziywq14j7wayyjr"; depends=[BH doParallel foreach Matrix Rcpp RcppArmadillo RcppProgress]; }; - sglasso = derive2 { name="sglasso"; version="1.2.5"; sha256="0z0bm6xq9581hdz5n6fbwa5k6j08knw1hzk2h1qxdzsswxiwsmj7"; depends=[igraph Matrix]; }; + sglasso = derive2 { name="sglasso"; version="1.2.6"; sha256="01162sh2cndqhcyswk7qprsychxik1yvkk7lr7d5vf25sq85h1k1"; depends=[igraph Matrix]; }; sglg = derive2 { name="sglg"; version="0.2.2"; sha256="0h1f31ksygg4cpsnqi87lknxyv39mygjj7sirwgxdha6wmzhl1dc"; depends=[AdequacyModel Formula ggplot2 gridExtra magrittr moments plot3D plotly pracma progress Rcpp survival TeachingSampling]; }; sglr = derive2 { name="sglr"; version="0.8"; sha256="0f4ndx0a50km7iwwqxbxv10rb5c96210vgimaskjlmsbpaqna601"; depends=[ggplot2 rlang shiny]; }; sgmodel = derive2 { name="sgmodel"; version="0.1.1"; sha256="1i13vp91i8s61ylsyg0iij1sfclwif7v91slr2srl8ddz6lm23nx"; depends=[ggplot2 ramify Rtauchen]; }; @@ -17324,10 +17585,11 @@ in with self; { shapeR = derive2 { name="shapeR"; version="1.0-1"; sha256="02al1g9ycfb63mcx4s16abniggl825ihjanx6silbpv6dn6g1ms8"; depends=[jpeg MASS pixmap plotrix vegan wavethresh]; }; shapefiles = derive2 { name="shapefiles"; version="0.7.2"; sha256="03sdcxbah05x0j6cpygx3ivkzrdlz2c0frxi30cinb05q6a41yjb"; depends=[foreign]; }; shapes = derive2 { name="shapes"; version="1.2.7"; sha256="155q6asc9202f85snyjaxhm8qpj7swgzhg95sisjy506gvcb6c8z"; depends=[MASS minpack_lm rgl scatterplot3d]; }; + shapley = derive2 { name="shapley"; version="0.1"; sha256="0x8fdl1kg027gl48ki9r1xlihqfhqvlaqkwjjrrw51k85r4ly1kb"; depends=[curl ggplot2 h2o waffle]; }; shapper = derive2 { name="shapper"; version="0.1.3"; sha256="1jaj9j894md45611gdrz05n0kfakawf7vlcc3zxhwdh3f7kwz4lp"; depends=[DALEX ggplot2 reticulate]; }; shapr = derive2 { name="shapr"; version="0.2.2"; sha256="0c8vivr1ia7x4jvdsffv06nl2yahxx38r5xbws5cdkalhbhlwv4h"; depends=[condMVNorm data_table Matrix mvnfast Rcpp RcppArmadillo]; }; shapviz = derive2 { name="shapviz"; version="0.9.2"; sha256="1wb61zmwx9nzxgn8y71h1j66xd3q78l31x9qd395d4m6g4xiry0c"; depends=[ggfittext gggenes ggplot2 ggrepel patchwork rlang xgboost]; }; - shar = derive2 { name="shar"; version="2.1.1"; sha256="08bzx1vd86i5nl97i3rqdh0m62xr5zs2j6zvc4pqxg1b9ms1kklk"; depends=[classInt spatstat_explore spatstat_geom spatstat_model spatstat_random terra]; }; + shar = derive2 { name="shar"; version="2.2.1"; sha256="0zhvbgg3db42bk7xzxg2m99q2nbrb4dckfqkcb1w3xffrbiiyz5v"; depends=[classInt spatstat_explore spatstat_geom spatstat_model spatstat_random terra]; }; sharp = derive2 { name="sharp"; version="1.4.4"; sha256="1472ax8aq5la2c4lga967r6c25jdhvs80q636r9p73iwyl0x36sz"; depends=[abind beepr fake glassoFast glmnet igraph mclust plotrix Rdpack withr]; }; sharpData = derive2 { name="sharpData"; version="1.4"; sha256="1pnza52wqczjds4vp2fy9ky41y7lyj9ywam11nsr0mpv63jglnc5"; depends=[KernSmooth quadprog]; }; sharpPen = derive2 { name="sharpPen"; version="1.9"; sha256="0ra1iq6bfiy87arj7nb4s4adiji3pcp7vrjhsfbm2agfw05k4zj4"; depends=[glmnet KernSmooth locpol Matrix np]; }; @@ -17342,7 +17604,7 @@ in with self; { shidashi = derive2 { name="shidashi"; version="0.1.5"; sha256="133pm4chyp9gm050bgccpfi9g4b83m76g23jc59761z229v868p7"; depends=[digest fastmap formatR httr jsonlite shiny yaml]; }; shiftR = derive2 { name="shiftR"; version="1.5"; sha256="18y2qzqx8hd6yph1wnsq4ygm16pcdszynh174xsrxrhvx2h9mi4x"; depends=[]; }; shinipsum = derive2 { name="shinipsum"; version="0.1.0"; sha256="0d94189hmg0bl8x0s8fpba5gcvb95sr9k9lbp3kk8482fc5h147n"; depends=[attempt DT dygraphs ggplot2 magrittr plotly]; }; - shiny = derive2 { name="shiny"; version="1.7.5.1"; sha256="0ipvwvhlhfrsp485pki4hy97v6s1sh851k3f5xsq1583r0fdj8r0"; depends=[bslib cachem commonmark crayon ellipsis fastmap fontawesome glue htmltools httpuv jsonlite later lifecycle mime promises R6 rlang sourcetools withr xtable]; }; + shiny = derive2 { name="shiny"; version="1.8.0"; sha256="0ha6w3pxmc1v2q10frhhf0qmbrfs0aq2gbdjmcyqnzkh52x411zj"; depends=[bslib cachem commonmark crayon ellipsis fastmap fontawesome glue htmltools httpuv jsonlite later lifecycle mime promises R6 rlang sourcetools withr xtable]; }; shiny_benchmark = derive2 { name="shiny.benchmark"; version="0.1.1"; sha256="14k51vhd3gngdpg67kn9gsd6i47sn9vkxx1qni139jlza7g9n0jx"; depends=[dplyr fs ggplot2 glue jsonlite progress renv shinytest2 stringr testthat]; }; shiny_blueprint = derive2 { name="shiny.blueprint"; version="0.2.0"; sha256="1g0c0iqp5yx24yzzxjnh7yjflx0k5pgkz6p415ml39pyczgq7107"; depends=[checkmate htmltools shiny shiny_react]; }; shiny_emptystate = derive2 { name="shiny.emptystate"; version="0.1.0"; sha256="07vw8dw6yv3gqp400h2b1x2nv2v3hzgfgmhb8fxxdicbx08vxv47"; depends=[fontawesome htmltools R6 shiny]; }; @@ -17356,7 +17618,7 @@ in with self; { shiny_router = derive2 { name="shiny.router"; version="0.3.1"; sha256="1zg8cdxmw620i1iv7jrghd768gw7iv52hi6lx79xvnfjz8w4si3x"; depends=[glue htmltools rlang shiny]; }; shiny_semantic = derive2 { name="shiny.semantic"; version="0.4.3"; sha256="124bxgbbzx4xkzxqzr16brqdm12ra0pvx1qhqkvp8alvjm0s54vg"; depends=[glue htmltools htmlwidgets jsonlite magrittr purrr R6 shiny]; }; shiny_tailwind = derive2 { name="shiny.tailwind"; version="0.2.2"; sha256="12z6cnir7gyh01pw2l2wmsx1kw4yjh7i4p6afr05mqik9kfiljw2"; depends=[htmltools shiny]; }; - shiny_telemetry = derive2 { name="shiny.telemetry"; version="0.1.0"; sha256="10iwpj0pfhf6sq9fw7vr33f94w7sz2x1v4l7j5g8iqixhcq2953d"; depends=[checkmate digest dplyr glue httr2 jsonlite logger lubridate odbc purrr R6 rlang RSQLite shiny tidyr]; }; + shiny_telemetry = derive2 { name="shiny.telemetry"; version="0.2.0"; sha256="0kp0wb3rh501bg7y8r90bwy1bbz5skmlvfjsqxj3nc1gpanndbjs"; depends=[checkmate digest dplyr glue httr2 jsonlite logger lubridate odbc purrr R6 rlang RSQLite shiny tidyr]; }; shiny_worker = derive2 { name="shiny.worker"; version="0.0.1"; sha256="1l30dx46s3q1x9nd42r6dracd3lqkjk80r9jyjqy8lmdsq48300i"; depends=[future R6 shiny]; }; shinyAce = derive2 { name="shinyAce"; version="0.4.2"; sha256="12mqvdh6rxsr61pc3pzla95r5f4l7xagjs2rcdr7c2lbqyxpx6aa"; depends=[jsonlite shiny]; }; shinyBS = derive2 { name="shinyBS"; version="0.61.1"; sha256="0h51685a9qll4agayldjyryi60ih969219ibg071slv0613p5v8a"; depends=[htmltools shiny]; }; @@ -17369,17 +17631,18 @@ in with self; { shinyDND = derive2 { name="shinyDND"; version="0.1.0"; sha256="0nkvz4hmjzmxlzj4vkjrdy8xlbxapg1amk180irgvwicqldi4jpm"; depends=[htmltools shiny]; }; shinyDatetimePickers = derive2 { name="shinyDatetimePickers"; version="1.1.0"; sha256="1wlll71j8yxgpf08lgsy5hgp0jdy0ldybsqflw2q8vdd3219n67v"; depends=[htmltools lubridate reactR shiny]; }; shinyEffects = derive2 { name="shinyEffects"; version="0.2.0"; sha256="1ajar09hmrk7vcw89wkgvkz2yl0cfnkz915b57w1lmbvpxzgsq3i"; depends=[htmltools shiny]; }; - shinyExprPortal = derive2 { name="shinyExprPortal"; version="1.0.0"; sha256="0vicgrz0l115za2zvjwqmmxbwppq37xmsmd5rrkarqrpv7vwpg7y"; depends=[bslib cli config data_table dplyr DT htmltools iheatmapr markdown qvalue Rfast rlang shiny tidyr vegawidget yaml]; }; + shinyExprPortal = derive2 { name="shinyExprPortal"; version="1.0.1"; sha256="0kf53k6p87nh2pa3fjh22j1cblfw88rkh1049lirpak3zw30vwh9"; depends=[bslib cli config data_table dplyr DT htmltools iheatmapr markdown qvalue Rfast rlang shiny tidyr vegawidget yaml]; }; shinyFeedback = derive2 { name="shinyFeedback"; version="0.4.0"; sha256="1xfznq2d4wkk0b0y4k25rwg4d3bhn3gxlkf3chfqk44f4rgril11"; depends=[fontawesome htmltools jsonlite shiny]; }; shinyFiles = derive2 { name="shinyFiles"; version="0.9.3"; sha256="11kjq0vw5c98lzrg80m9w917lkgw5im2h9wgk1b84vlaxrjy2wja"; depends=[fs htmltools jsonlite shiny tibble]; }; shinyGizmo = derive2 { name="shinyGizmo"; version="0.4.2"; sha256="0pjmin2qmfqg5ppqx8ld6pv8y91ci6bagmp4bi476i9bk9q50hz8"; depends=[glue htmltools htmlwidgets magrittr purrr rlang shiny shinyWidgets]; }; shinyGovstyle = derive2 { name="shinyGovstyle"; version="0.0.8"; sha256="1czyz51k0xm62b9bzcsygslm2nd3fnmll4wjxwimlngy00rnjnng"; depends=[htmltools jsonlite shiny shinyjs]; }; shinyHeatmaply = derive2 { name="shinyHeatmaply"; version="0.2.0"; sha256="1n7c7dvvb9kqay2phcf0bkwi990x1cjl7js6pq05xx7rli5bc5h4"; depends=[dplyr heatmaply htmltools plotly readxl rmarkdown shiny xtable]; }; - shinyHugePlot = derive2 { name="shinyHugePlot"; version="0.2.5"; sha256="0dwx5r31rijnh8fvx74gd8q10glv700r1nf1l9c9c7bpxrmkxkxq"; depends=[assertthat bit64 data_table dplyr htmltools jsonlite lazyeval nanotime plotly purrr R6 rlang shiny shinyjs stringr tibble tidyr tidyselect]; }; + shinyHugePlot = derive2 { name="shinyHugePlot"; version="0.2.6"; sha256="1sf26jz2jbyrs11a1gricnb3iq4106cpf10kbhqx0hy12q47lk1y"; depends=[assertthat bit64 data_table dplyr htmltools jsonlite lazyeval nanotime plotly purrr R6 rlang shiny shinyjs stringr tibble tidyr tidyselect]; }; shinyIRT = derive2 { name="shinyIRT"; version="0.1"; sha256="01x7nhjs1dx2ldwznhbavc5vzqhgkn73xg395vlf2hgzbxa2ydvj"; depends=[irtoys magrittr mirt psych readxl shiny shinycssloaders shinydashboard]; }; + shinyInvoice = derive2 { name="shinyInvoice"; version="0.0.4"; sha256="1s1zmjp37px2wksa4acw3jng659k5zgm1a8pk23kb4f9kr7hjpfd"; depends=[dplyr lubridate quantmod rlang shiny stringr tibble]; }; shinyKGode = derive2 { name="shinyKGode"; version="1.0.5"; sha256="004zwz4kqfijzvvwkq8v1gi25w1wrdlg8230g93w36gbi6cl2vk1"; depends=[ggplot2 gridExtra KGode mvtnorm pracma pspline reshape2 shiny shinyjs XML]; }; shinyKnobs = derive2 { name="shinyKnobs"; version="0.1.3"; sha256="1rxlvq4vr87krf7d6mpx0y53hyz8q1jnx6nv7mlhc1ck13q6fgac"; depends=[htmltools shiny]; }; - shinyLP = derive2 { name="shinyLP"; version="1.1.2"; sha256="1sjcll10ciq6pj9h8c6ybjqp8763wc423hddlalcblxxpajf6avz"; depends=[shiny]; }; + shinyLP = derive2 { name="shinyLP"; version="1.1.3"; sha256="1cdi9dbaz1q71c0wb5a910xz3rspqgqxdk14ibhh06lb0hs9n4nc"; depends=[shiny]; }; shinyML = derive2 { name="shinyML"; version="1.0.1"; sha256="086iavycv1gd6scfsixf7cmw0s5a4dc6x5cylfasxrzgiixd76c9"; depends=[argonDash argonR data_table dplyr DT dygraphs ggplot2 h2o lubridate plotly shiny shinycssloaders shinyjs shinyWidgets sparklyr tidyr]; }; shinyMatrix = derive2 { name="shinyMatrix"; version="0.6.0"; sha256="17v7gg5bli6x3w063id804859m6g07i9ksbm2jyb65489pjgpadk"; depends=[jsonlite shiny]; }; shinyMergely = derive2 { name="shinyMergely"; version="0.2.0"; sha256="1rvv5lcbb17i263xx1zn9524iwpmw56xwh0b2qii8096l20w6cnd"; depends=[shiny]; }; @@ -17398,7 +17661,7 @@ in with self; { shinySelect = derive2 { name="shinySelect"; version="1.3.0"; sha256="16fnqhw2kd7mamhc4qnravrybbi2fbxkdmdpk07ycnasn00fprp0"; depends=[fontawesome htmltools reactR]; }; shinyShortcut = derive2 { name="shinyShortcut"; version="0.1.0"; sha256="101wz9s4rk7fbaqgm0r2v3v8za20vdxwq4vhkz8xr7y5pr65sxiq"; depends=[]; }; shinyStorePlus = derive2 { name="shinyStorePlus"; version="1.1"; sha256="1y4yqladglkyz3br7g0prd9dniqd0pdj775dic0nlgg27gdl8ca8"; depends=[htmltools jsonlite shiny shinyWidgets]; }; - shinyTempSignal = derive2 { name="shinyTempSignal"; version="0.0.3"; sha256="0lw59hy3hc6h6262bsfk1yz3zqfjfzc8f6smyq0f7yk5vkkiw359"; depends=[ape Cairo config DescTools forecast ggplot2 ggprism ggpubr ggtree golem shiny shinydashboard shinyjs stringr treeio]; }; + shinyTempSignal = derive2 { name="shinyTempSignal"; version="0.0.5"; sha256="19mlk96sk0h8igvbhldmbcq99ima07mqk6adkklrg8byrvhv9bqc"; depends=[ape Cairo config DescTools forecast ggplot2 ggpmisc ggprism ggpubr ggtree golem shiny shinydashboard shinyjs stringr treeio]; }; shinyTime = derive2 { name="shinyTime"; version="1.0.3"; sha256="04vpq9fpp1iwila9l33cljig3hfyw7lsg03fqny0q260ka8chhgz"; depends=[htmltools shiny]; }; shinyToastify = derive2 { name="shinyToastify"; version="2.0.0"; sha256="0ipqwgl89pjiycwg78p0db45lbzry989kn6aqjsf79lpvghnk5qs"; depends=[fontawesome htmltools reactR shiny]; }; shinyTree = derive2 { name="shinyTree"; version="0.3.1"; sha256="0krffsgdv99cvyzdspb9l7cdnq1vibsbmpd4w48r5pi4v8jbvfj6"; depends=[htmlwidgets jsonlite promises shiny stringr]; }; @@ -17406,15 +17669,16 @@ in with self; { shinyXYpad = derive2 { name="shinyXYpad"; version="0.2.0"; sha256="08acqbh41379p2jh0wc30m4h7rlx81cf578qc604jxnsvilvjr9n"; depends=[shiny]; }; shinyaframe = derive2 { name="shinyaframe"; version="1.0.1"; sha256="1flhgsm4q7p5acb41v73pf8ni92y9dwdppxjb9czlz1sxwf03p1s"; depends=[htmltools htmlwidgets shiny]; }; shinyalert = derive2 { name="shinyalert"; version="3.0.0"; sha256="1gws8vshnqngm55rnw22qjlqsn9d240p734dnjvsv96d22b8bsnl"; depends=[htmltools knitr shiny uuid]; }; - shinyanimate = derive2 { name="shinyanimate"; version="0.3.0"; sha256="0vshid5mfq006cprjj61d0g7ajyc3plc66x55c5jjmijwbp6pw7a"; depends=[shiny]; }; + shinyanimate = derive2 { name="shinyanimate"; version="0.4.0"; sha256="1n8nf42imw0qcgdh1h0yhqid2g688cxrp22npj3z1mnynmjvsxp9"; depends=[shiny]; }; shinyauthr = derive2 { name="shinyauthr"; version="1.0.0"; sha256="0apaqjkxpr96kx9indl0pifk5y75gdx5npfcvxfg5k2crpx9vmxk"; depends=[dplyr glue rlang shiny shinyjs sodium]; }; shinybrms = derive2 { name="shinybrms"; version="1.8.0"; sha256="0qsmgswkk7l7nn4sabisg4gwiqiicjdxi0g96778ad4d4prnx107"; depends=[brms rlang rstan shiny]; }; shinybrowser = derive2 { name="shinybrowser"; version="1.0.0"; sha256="0ah25x2r92crc761ixmzs9mnzdvwrnmdqfjv410138x8kb8f9pm8"; depends=[shiny]; }; - shinybusy = derive2 { name="shinybusy"; version="0.3.1"; sha256="1c87456ipg4qq8sb7xjn3q72dsfr2hl2l73nncj4i87fgvm85mkl"; depends=[htmltools htmlwidgets jsonlite shiny]; }; + shinybusy = derive2 { name="shinybusy"; version="0.3.2"; sha256="1myarm2g5j91qikxqjx7b1a2kpdyll3mdcmagw9fr443dm2nnwa6"; depends=[htmltools htmlwidgets jsonlite shiny]; }; shinycssloaders = derive2 { name="shinycssloaders"; version="1.0.0"; sha256="0r3xm273lhdhzbs2mkgw1m2kwb7z1dh1pzya8yxy5vacda1l2ikl"; depends=[digest glue shiny]; }; shinycustomloader = derive2 { name="shinycustomloader"; version="0.9.0"; sha256="1klx71vr26g0gjf6hbiia1qidqii5d467i1sdjvlrg1hxdcggqff"; depends=[glue shiny]; }; shinydashboard = derive2 { name="shinydashboard"; version="0.7.2"; sha256="0hrqkwlpb8rnmp5j74p134g4c4cl16icmwc2ip6k1634fa2y8vm5"; depends=[htmltools promises shiny]; }; shinydashboardPlus = derive2 { name="shinydashboardPlus"; version="2.0.3"; sha256="10sdb1vddx2ij867pqijr63l4233hw1vnn7mzbs0z23g77x8ra29"; depends=[fresh htmltools lifecycle shiny shinydashboard waiter]; }; + shinydbauth = derive2 { name="shinydbauth"; version="1.0.0.1"; sha256="04f8cq5vismbl05cvkd4kh5h1bzank5fhsgfmxdqwpy3jp68a1kf"; depends=[billboarder DT glue htmltools openssl R_utils R6 scrypt shiny yaml]; }; shinydisconnect = derive2 { name="shinydisconnect"; version="0.1.1"; sha256="1yhppfx8jpvz48iwxnimcwqhj02vqjrfmh4z5rdn9d35p51c8zjc"; depends=[checkmate glue htmltools shiny]; }; shinydlplot = derive2 { name="shinydlplot"; version="0.1.4"; sha256="1gxr98p2zyvwa6q8a80bz4h1pkgbdn58cwqbd19dbn4liszfxsy8"; depends=[htmltools htmlwidgets plotly shiny shinyBS shinyjs]; }; shinydrive = derive2 { name="shinydrive"; version="0.1.3"; sha256="16yfc9grmjzkpl6xzqn5rpkqd2qnlj4qdgia8img794l6j0y8dgp"; depends=[DT htmltools knitr R_utils shiny yaml]; }; @@ -17426,7 +17690,7 @@ in with self; { shinyjqui = derive2 { name="shinyjqui"; version="0.4.1"; sha256="135gwz7syyb6pbn0lkvmq0v1c6r1zivavnqhi1rnzbbzlysi27v1"; depends=[htmltools htmlwidgets jsonlite rlang shiny]; }; shinyjs = derive2 { name="shinyjs"; version="2.1.0"; sha256="1id9gsrkr28xl80a8794in17rxmmz06zqvd5hlns7mqz3fzhrhky"; depends=[digest jsonlite shiny]; }; shinylight = derive2 { name="shinylight"; version="1.1.2"; sha256="0y2gmi8y5b595dca1sch9mzhq2mbbj7mv879md0ajc16ycfi17rp"; depends=[httpuv jsonlite later]; }; - shinylive = derive2 { name="shinylive"; version="0.1.0"; sha256="041qkhr3ynz1haxqv7ndlvygckixj3kj28m8y0laixqvmjdk0lcg"; depends=[archive brio fs jsonlite progress rappdirs rlang]; }; + shinylive = derive2 { name="shinylive"; version="0.1.1"; sha256="1hsvcsbzrzv0gb99mfc02sd77mlwcxjqzzr5v2jfr5ajq33q3ffb"; depends=[archive brio fs httr2 jsonlite progress rappdirs rlang]; }; shinyloadtest = derive2 { name="shinyloadtest"; version="1.1.0"; sha256="0684p9anbc3qdn4rqkxp33nm0d04zb264b3blwa23pa5akis2klq"; depends=[curl dplyr ggplot2 httpuv jsonlite magrittr R6 rlang scales stringr svglite vroom websocket xml2]; }; shinylogs = derive2 { name="shinylogs"; version="0.2.1"; sha256="1w19z0zw2k3ni7ckg04q7j0jx4k3cm490z0qccj1smq01wn3czjj"; depends=[anytime bit64 data_table digest htmltools jsonlite nanotime shiny]; }; shinymanager = derive2 { name="shinymanager"; version="1.0.410"; sha256="0nl672dgwj34wm4i3pxk28lv6qw9xsgg3hm0h78q3zdgk8a33kdn"; depends=[billboarder DBI DT htmltools openssl R_utils R6 RSQLite scrypt shiny]; }; @@ -17437,6 +17701,7 @@ in with self; { shinypanel = derive2 { name="shinypanel"; version="0.1.5"; sha256="003sp6x78mwjf5hl8m4gqwyxlg3zilli6932l7k82s1hbaksar1j"; depends=[htmltools jsonlite shiny shinyBS shinyjs]; }; shinypanels = derive2 { name="shinypanels"; version="0.5.0"; sha256="1rslz9wl3gx11dm6il77j4k5swxvcfy5mf0zffbs4zk8xjgpzzj6"; depends=[glue htmltools shiny shinyjs]; }; shinypivottabler = derive2 { name="shinypivottabler"; version="1.2"; sha256="0qjk2xgbcl60aqva5jn0bbrzmcql8kaqs1air2xyjbfj73axsrig"; depends=[colourpicker htmltools openxlsx pivottabler shiny]; }; + shinyquiz = derive2 { name="shinyquiz"; version="0.0.1"; sha256="0d4n15dx2kizl37gvmgwc49b0n99x59xp168an8n3k0h8qzdcyd4"; depends=[cli fontawesome glue htmltools purrr reactable scales shiny shinyjs stringi stringr]; }; shinyr = derive2 { name="shinyr"; version="0.3.0"; sha256="1r4xpb5x0711jbh4v8wkfhgg3s7l1sxqr6i90wsh0k0q3501fs2i"; depends=[caret corrplot dplyr e1071 knitr nnet plotly randomForest RColorBrewer shiny shinydashboard tm wordcloud]; }; shinyrecipes = derive2 { name="shinyrecipes"; version="0.1.0"; sha256="1b4l27qsl1lpssh3jv1pqmw2mq8hanfj0m269yp5618nd5nxd2ck"; depends=[dplyr DT esquisse miniUI purrr recipes rstudioapi shiny shinyglide shinyWidgets sortable stringr tidyr]; }; shinyreforms = derive2 { name="shinyreforms"; version="0.0.1"; sha256="1g1blc57c6zkca0m52bqkw8jwgpplabns07x1cwkk46dmv6sgqci"; depends=[htmltools R6 shiny]; }; @@ -17454,16 +17719,17 @@ in with self; { shock = derive2 { name="shock"; version="1.0"; sha256="11m52al591xjznl62q1waxsg5m1a1afmd0yqcc5zsjlrplykg4lp"; depends=[capushe GGMselect glasso igraph mvtnorm]; }; shopifyadsR = derive2 { name="shopifyadsR"; version="0.1.0"; sha256="0vd8md4w4v05l9d5v7kx21kw3rkbkx8iqf4da44x95kfnnxiqjcx"; depends=[jsonlite]; }; shopifyr = derive2 { name="shopifyr"; version="1.0.0"; sha256="05hih1v5vvr7vmwarizsdx8517g74s96fdsz3klcz3g12idx1nqn"; depends=[curl jsonlite R6]; }; - shoredate = derive2 { name="shoredate"; version="1.1.0"; sha256="0kivbaka0zwhh6i1lyz3xq20g3ay0ppq77qmsn8pfqnxxdax29cs"; depends=[ggplot2 ggrepel ggridges ggspatial sf terra]; }; + shoredate = derive2 { name="shoredate"; version="1.1.1"; sha256="1zhfaj2wqpmi3ar71czbss32k00sqv1inj6rvj9kqhzshsi0w3zv"; depends=[ggplot2 ggrepel ggridges ggspatial sf terra]; }; + shortIRT = derive2 { name="shortIRT"; version="0.1.2"; sha256="1z8z3py2f6dd7bbhxgy0skm2lhsla1xniym3si27kkgh4lds9qrc"; depends=[dplyr ggplot2 TAM]; }; shortcuts = derive2 { name="shortcuts"; version="1.4.0"; sha256="0y77napfz1v3s667cmyn8357xg5lncbw1hc3hm5kra6nalhq1jps"; depends=[rstudioapi]; }; - shorts = derive2 { name="shorts"; version="2.4.0"; sha256="00790yv8h3z0m8mf2v6vyy9cjz08r5pjw2zxnhf8ic4qandysxd9"; depends=[ggplot2 LambertW minpack_lm purrr tidyr]; }; + shorts = derive2 { name="shorts"; version="2.5.0"; sha256="16k5gl35gybzwaddmwcy6zr3gzqbkjs9brj55slpnip1yfi9qm9i"; depends=[ggplot2 LambertW minpack_lm purrr tidyr]; }; shotGroups = derive2 { name="shotGroups"; version="0.8.2"; sha256="0m3n3ja6ny45rdd13s9f7nm1ml3p3y7nisbhfg0fj369wym95r1p"; depends=[boot coin CompQuadForm KernSmooth robustbase]; }; showimage = derive2 { name="showimage"; version="1.0.0"; sha256="1c0x3iqjdjsz3cdhc02b3qm2pwxjr1q2k87jwvxj9lnzzw81f1pl"; depends=[png]; }; showtext = derive2 { name="showtext"; version="0.9-6"; sha256="0c4cssqk4s27pxfyb7fii97zhy4awzapj7bx9zkbki4va75mkjhf"; depends=[showtextdb sysfonts]; }; showtextdb = derive2 { name="showtextdb"; version="3.0"; sha256="0hlnc3fhgrdkd46n7hb6id0gg1v0bf8s4679nrr7rchyp455szq2"; depends=[sysfonts]; }; - shrink = derive2 { name="shrink"; version="1.2.2"; sha256="0d80a0qqrsb9ybzqvg3m6a9r16ky7hqchq0hjvj8ipk430mmxdjm"; depends=[MASS mfp rms survival]; }; + shrink = derive2 { name="shrink"; version="1.2.3"; sha256="0f66m6w2wh0g38g3s2fj3mj90gpdffjffj74cbg4nbl6mdb0lqaf"; depends=[MASS mfp rms survival]; }; shrinkDSM = derive2 { name="shrinkDSM"; version="0.2.0"; sha256="0vl3cl9njl0irz9hsli7xkf49jawkywww91j5gxlmz5vdrxnwz9c"; depends=[coda Rcpp RcppArmadillo RcppProgress shrinkTVP stochvol]; }; - shrinkTVP = derive2 { name="shrinkTVP"; version="2.0.6"; sha256="1p9s4n3dw95ghcma71ik5zidqk54cbsd30csnbqp2w377241lxd3"; depends=[coda GIGrvg Rcpp RcppArmadillo RcppProgress stochvol zoo]; }; + shrinkTVP = derive2 { name="shrinkTVP"; version="2.1.1"; sha256="1a49g5lcpl27k0j4f15a7gz58332qzbxxq9hsq4adx70dv4hp3ni"; depends=[coda GIGrvg Rcpp RcppArmadillo RcppProgress stochvol zoo]; }; shroomDK = derive2 { name="shroomDK"; version="0.2.2"; sha256="0dig3zh4fbgxdaiaczbccja8fx2v29nskj6jm75vj40ml7zyyrad"; depends=[httr jsonlite]; }; shuffle = derive2 { name="shuffle"; version="1.0.1"; sha256="0aqb11h340picx7z2jg3k46l3pr6fkknlpyzc0z89hhrc90pss48"; depends=[]; }; shuffleCI = derive2 { name="shuffleCI"; version="0.1.0"; sha256="1n9k28m1fcnw1my9a7v0gy9waygd48lab45vj9k2wwijbc325zai"; depends=[plotrix]; }; @@ -17482,14 +17748,14 @@ in with self; { sigQC = derive2 { name="sigQC"; version="0.1.23"; sha256="0fpci6l0h6047qq7igwmm38rma768l706xfmfdfn1qqgkm5sv0x8"; depends=[biclust circlize class cluster ComplexHeatmap fmsb gplots gridGraphics GSVA KernSmooth lattice MASS mclust moments nnet]; }; sigclust = derive2 { name="sigclust"; version="1.1.0.1"; sha256="1q3jdalm7cbsl78gssl3jsifh56wyczrlx2ya4p74r4fb6sv9kga"; depends=[]; }; sigmajs = derive2 { name="sigmajs"; version="0.1.5"; sha256="1d26llpgnj687b8rwgbyhw88zakp334n4a9gabf72qwrg4awm1v5"; depends=[crosstalk dplyr htmltools htmlwidgets igraph jsonlite magrittr purrr scales shiny]; }; - sigminer = derive2 { name="sigminer"; version="2.2.2"; sha256="1b495vmijggw2n0lypm0vz7xdrjjz4gbbcdjjpp106wrsmx5risp"; depends=[cli cowplot data_table dplyr furrr future ggplot2 ggpubr maftools magrittr NMF purrr Rcpp rlang tidyr]; }; + sigminer = derive2 { name="sigminer"; version="2.3.0"; sha256="1i6qf5g58gi857szlpiqkcv5rfskh2qv53ywx7bxl3hzgy9178lb"; depends=[cli cowplot data_table dplyr furrr future ggplot2 ggpubr maftools magrittr NMF purrr Rcpp rlang tidyr]; }; sigmoid = derive2 { name="sigmoid"; version="1.4.0"; sha256="067ygikaaniikig1ypd6ry187981xar7i539917zf0avszshisxq"; depends=[]; }; - signal = derive2 { name="signal"; version="0.7-7"; sha256="0qaf39vfmhn3d0bdjqd805ayfkaj48dkmf5dqd47bpk7dp21b837"; depends=[MASS]; }; + signal = derive2 { name="signal"; version="1.8-0"; sha256="1126p631zm0wc4h9ghqai5yb9vklpz676fygb0d0aavs2raaijw9"; depends=[MASS]; }; signalHsmm = derive2 { name="signalHsmm"; version="1.5"; sha256="1d4v6cbvcbi8pb5zmn58s01h3jb0kv7yr7qvcnx4p2v82knvhik7"; depends=[Rcpp seqinr shiny]; }; signatureSurvival = derive2 { name="signatureSurvival"; version="1.0.0"; sha256="0c3wjhpsswi1l76m4nlh9xfi27g1d18c960q31lwd7b659w0x1fp"; depends=[dplyr forestplot ggplot2 gplots gtools survival survminer]; }; signed_backbones = derive2 { name="signed.backbones"; version="0.91.5"; sha256="0xk8sncblzihqzqfpaq7158slvrb6ww3dc4v5di1m2bqwhykncwi"; depends=[reshape2]; }; signibox = derive2 { name="signibox"; version="1.0"; sha256="0yjdpcyjdlmr6brb3a21wcs5rxryvjsnkhl8v73g2cygbhqba8rr"; depends=[]; }; - signnet = derive2 { name="signnet"; version="1.0.2"; sha256="0vp6ja12ipl2cg7sam48ari5civ36fz24yvyvibi4m8ncdnpil6c"; depends=[igraph Matrix Rcpp RcppArmadillo]; }; + signnet = derive2 { name="signnet"; version="1.0.4"; sha256="04w8wik8q15hi7yc9rp30bc31pvw15bkrvr3lnif46zrrhsq6cv8"; depends=[igraph Matrix Rcpp RcppArmadillo]; }; signs = derive2 { name="signs"; version="0.1.2"; sha256="0dzf5pydvs93rvj6idw9l2asv1bxwz20df7qis2db84hfww2kc6m"; depends=[rlang scales]; }; sigora = derive2 { name="sigora"; version="3.1.1"; sha256="11abbvynyhbb7y7zndbkivb13yxj8l86nrn361mfv495g1d3ba8s"; depends=[slam]; }; sigr = derive2 { name="sigr"; version="1.1.5"; sha256="16v6f25pdbfm10b3cicf11nzqz5ykq70vppll7rxqbyafkcfwcra"; depends=[wrapr]; }; @@ -17501,28 +17767,31 @@ in with self; { simDAG = derive2 { name="simDAG"; version="0.1.0"; sha256="0byvh3kx7bbz9wmjfbzb9fpidi3qmnw1yvgpgpd1szxd072ldjj0"; depends=[data_table dplyr Rfast rlang]; }; simDNAmixtures = derive2 { name="simDNAmixtures"; version="1.0.1"; sha256="17865ihl8bv3nqhsqy3dpi82x4q1q5dzff6r3qygdnmh0ymhr7d2"; depends=[dplyr pedtools readr]; }; simET = derive2 { name="simET"; version="1.0.3"; sha256="0l3mk2n1ik9xg660js97n03gix5im2f42q2r7hs9gvhs0g2552kp"; depends=[dplyr ggplot2 ggpmisc ggpubr lubridate magrittr plyr rlang stringr tidyr]; }; + simEd = derive2 { name="simEd"; version="2.0.1"; sha256="1r4ahsfkrymhachdcjj7nvdiplxjla0jlsay3bi04n6rrl758rny"; depends=[rstream shape]; }; simExam = derive2 { name="simExam"; version="1.0.0"; sha256="10p3y67cli5is2gj23cjy8y7zpbnn2jbxmfiq01ls0hc1jind82w"; depends=[Matrix msm]; }; simFrame = derive2 { name="simFrame"; version="0.5.4"; sha256="1a2p4hx80rrrzs4gjscdsy1jbzpahkw0h2nlna4q8p75blgnzwpn"; depends=[lattice Rcpp]; }; - simIDM = derive2 { name="simIDM"; version="0.0.5"; sha256="1fk8slwcm26hnqzrhrv459kq120cwhg38jyxax280g3ynqjss59h"; depends=[checkmate]; }; + simIDM = derive2 { name="simIDM"; version="0.1.0"; sha256="0iha1daw4jklgqrskflpw5rgmxdhni72kv8bfzid1vb28m7dpydq"; depends=[checkmate furrr future mstate parallelly survival]; }; simIReff = derive2 { name="simIReff"; version="1.0"; sha256="0yi43splda8chnh4bq5x6chbrl5c0y9sv1k2m31763da0czayall"; depends=[bde extraDistr ks MASS np rvinecopulib truncnorm]; }; simITS = derive2 { name="simITS"; version="0.1.1"; sha256="0b62lvknfqli6ki4w360b1ih9nsm6pinaqskgra6vl2nzsim3sal"; depends=[dplyr rlang]; }; simMP = derive2 { name="simMP"; version="0.17.3"; sha256="1pzg79dd08ds3pfzxnk9h95gaibicv00mnm0jb4i8v5is4gzrdhr"; depends=[Biostrings BSgenome doParallel foreach GenomeInfoDb GenomicRanges IRanges XVector]; }; simMSM = derive2 { name="simMSM"; version="1.1.42"; sha256="0nxs3n64mh1sbnbmqbj7hm8d43z0cja8da9yhsygl60r1jyl98xd"; depends=[mvna survival]; }; simMetric = derive2 { name="simMetric"; version="0.1.1"; sha256="09jpjlvmvb9z2v71n8cb14b0zfi78k609c7xvs78rghdiswqfv23"; depends=[assertthat dplyr]; }; simPH = derive2 { name="simPH"; version="1.3.13"; sha256="086060f78f1dmpa6cyhx160blchckplw04gs6997f1hwzswci2l2"; depends=[data_table dplyr ggplot2 gridExtra lazyeval MASS mgcv quadprog stringr survival]; }; - simPop = derive2 { name="simPop"; version="2.1.2"; sha256="0x66i2k9s16lsjm79sjszkqa1j9nzwdnbb19lpgxbf1fcdwm5lrh"; depends=[colorspace data_table doParallel e1071 EnvStats fitdistrplus foreach lattice MASS matrixStats nnet party ranger Rcpp RcppArmadillo vcd VIM wrswoR xgboost]; }; + simPop = derive2 { name="simPop"; version="2.1.3"; sha256="0rgaalkaxxh92yryzd39qnpahzi7d2bqnnsgx4i5rai2vrj1hqfi"; depends=[colorspace data_table doParallel e1071 EnvStats fitdistrplus foreach lattice MASS matrixStats nnet partykit ranger Rcpp RcppArmadillo vcd VIM wrswoR xgboost]; }; + simRestore = derive2 { name="simRestore"; version="1.1.4"; sha256="1psw58k5i7vj7a49cski28dxwryi6qk167w2v003ja209pdpbfx8"; depends=[Rcpp shiny subplex tibble]; }; + simStateSpace = derive2 { name="simStateSpace"; version="1.0.1"; sha256="1xxacb6r1zx15lybixbd8188kcyw4gzh677pn9sfhzsq6hkkd4g3"; depends=[Rcpp RcppArmadillo]; }; simTargetCov = derive2 { name="simTargetCov"; version="1.0.1"; sha256="0gdqqwg9i2hga6l4s5x7wbbsm20b3sgwrci1g6hc04x1h9aawiw2"; depends=[MASS]; }; simTool = derive2 { name="simTool"; version="1.1.7"; sha256="0q093dlfj23zq3w4schn1ycff79vgzr2s3wgbz2qz4s3b7fddk70"; depends=[dplyr purrr tibble tidyr vctrs]; }; simaerep = derive2 { name="simaerep"; version="0.4.3"; sha256="1s13d8f4izwzrav7rhmx3s8nv36m5kwz806r85k7gqn24lnaa5ra"; depends=[cowplot dplyr forcats furrr ggplot2 knitr magrittr progressr purrr RColorBrewer rlang stringr tibble tidyr]; }; simboot = derive2 { name="simboot"; version="0.2-6"; sha256="0bgibrqb9j62p1chldi1lvdsgc6sgsr7afyq4lvyrc2h861f3j9d"; depends=[boot mvtnorm]; }; simcausal = derive2 { name="simcausal"; version="0.5.6"; sha256="0r87i5m8sd9bf8ddlkgq9dl0pglhxl9pj5b0vx79va9r5wb55vgk"; depends=[assertthat data_table igraph Matrix R6 stringr]; }; - simcdm = derive2 { name="simcdm"; version="0.1.1"; sha256="1qzxxpz3nvqf9801k6zgphv6vd8alf2sf6cvzggk7cz6x5jc3w1r"; depends=[Rcpp RcppArmadillo]; }; - simcross = derive2 { name="simcross"; version="0.3-6"; sha256="1h0j28ah8dxylqjzwv6lfrisw8qm82a5mc5c7lp274fgvj8kr6jq"; depends=[Rcpp]; }; + simcdm = derive2 { name="simcdm"; version="0.1.2"; sha256="1pwh1ial7naanqpxhlsn6ij2i35xnj8hwyhvipzc7csd5l5ss5z1"; depends=[Rcpp RcppArmadillo]; }; + simcross = derive2 { name="simcross"; version="0.6"; sha256="01ch7h2y7ybggxrwg17yx5d7psjnmambzn5zwwi94gwhxmzp987b"; depends=[Rcpp]; }; simctest = derive2 { name="simctest"; version="2.6"; sha256="0igwn82zfx6ajv42gpyx6969aldygldkpdc9ik6601511sscvf2a"; depends=[]; }; - simdd = derive2 { name="simdd"; version="1.1-1"; sha256="141jap036w1nfmxgi87wlw455yr8jdrwr8h8ww3351l17h37zsb6"; depends=[]; }; + simdd = derive2 { name="simdd"; version="1.1-2"; sha256="05ngayian2klvi8mirpy3pvzzk737wbld31d8v4338mflk5prnqq"; depends=[]; }; simdistr = derive2 { name="simdistr"; version="1.0.1"; sha256="16fsj42zr627i57q1q72l1nhin7g6rxq9hfy487hf1ywd6rvns18"; depends=[]; }; simecol = derive2 { name="simecol"; version="0.8-14"; sha256="0b0zx5wqvrfs4rpn6ngdf0c9d99wf9d0niaps41lslvlnpddvjw8"; depends=[deSolve minqa]; }; - simer = derive2 { name="simer"; version="0.9.0.3"; sha256="060vaaqwvq4dpizwc8jh6712s9aa3cl1ys08bydi85laf22x7zqb"; depends=[BH bigmemory igraph jsonlite MASS Matrix Rcpp RcppArmadillo RcppProgress]; }; + simer = derive2 { name="simer"; version="0.9.0.4"; sha256="1mgkmfv1mm4paxvzq43rdxjxf13csxizl8v1gc47y7h21hq2f5sx"; depends=[BH bigmemory igraph jsonlite MASS Matrix Rcpp RcppArmadillo RcppProgress]; }; simest = derive2 { name="simest"; version="0.4"; sha256="1wp08dkbshn5parq69d7iizp4g16qzpdim37kcg09pgsc3aghwaj"; depends=[cobs nnls]; }; simex = derive2 { name="simex"; version="1.8"; sha256="1849wayygyqv0fh1i2qva7ggh2yah2nn0sgbcy9pldxrjq8q9iw0"; depends=[]; }; simexaft = derive2 { name="simexaft"; version="1.0.7.1"; sha256="0n3n2g07pnpcqhbrjf78lbvqvc136g7jxlx6q27vnk96kwizh3f1"; depends=[mvtnorm survival]; }; @@ -17534,11 +17803,11 @@ in with self; { simhelpers = derive2 { name="simhelpers"; version="0.1.2"; sha256="0ykv03nz7133af0yc7a3j67bpqjch4jkp8szlhy68pbwgin5zm1z"; depends=[dplyr furrr magrittr Rdpack rlang rstudioapi tibble tidyr]; }; simitation = derive2 { name="simitation"; version="0.0.7"; sha256="1f2d5niq42wyrqlxjfdfb744h5fy646fvlbi7xakkhvkwrah8x5f"; depends=[data_table]; }; simlandr = derive2 { name="simlandr"; version="0.3.0"; sha256="04nl58qayvx1pkhscqy0664dvb6jg54amf43pff81gxsvk7gs20l"; depends=[bigmemory digest dplyr forcats gganimate ggplot2 htmlwidgets ks lifecycle magrittr MASS plotly progress purrr rlang tibble]; }; - simmer = derive2 { name="simmer"; version="4.4.6.2"; sha256="1kdikdri2gmfi5badxgmbsq4svgqjmsjysjgff86nanwbf85kk08"; depends=[codetools magrittr Rcpp]; }; + simmer = derive2 { name="simmer"; version="4.4.6.3"; sha256="03fns5z7qvmx42cj5q9k5mc3klbb3wi23qzwym6rjcik6zrlyasx"; depends=[codetools magrittr Rcpp]; }; simmer_bricks = derive2 { name="simmer.bricks"; version="0.2.2"; sha256="1a3rm3fmr4ysack47vhmyxdg45pvplhz07bc5fsx17m08hhlyjhv"; depends=[simmer]; }; simmer_plot = derive2 { name="simmer.plot"; version="0.1.18"; sha256="0wxn6g27i4fk4xkl9l8qbsqg61jr7hz5n974gfld38cigp1f62n9"; depends=[DiagrammeR dplyr ggplot2 scales simmer tidyr]; }; simml = derive2 { name="simml"; version="0.3.0"; sha256="18qrpxf4fsqirfxj4ldkmdyc6zp2px2bcad9j50ihb3r2a33ny3x"; depends=[mgcv]; }; - simmr = derive2 { name="simmr"; version="0.5.1.215"; sha256="1aaxfc16941fwaiab6zn5ra23ld64nq62bpi8mvnm78rpfy3879w"; depends=[bayesplot boot checkmate compositions GGally ggplot2 R2jags Rcpp RcppArmadillo RcppDist reshape2 viridis]; }; + simmr = derive2 { name="simmr"; version="0.5.1.216"; sha256="0rvf6b0x6iivgp1czj98972p8gr1g96sc3g55p30gnw08b48i1x5"; depends=[bayesplot boot checkmate compositions GGally ggplot2 R2jags Rcpp RcppArmadillo RcppDist reshape2 viridis]; }; simode = derive2 { name="simode"; version="1.2.0"; sha256="0wlnd01xfdqvjfvmkhkj6nvkrnv5ghjv4md5nhaqsjc8bycawyl0"; depends=[deSolve pracma quadprog]; }; simodels = derive2 { name="simodels"; version="0.0.5"; sha256="149490vgw0549x5zym28kyxgyjhjl2wx7rcak9gabkznwjjrhqk5"; depends=[dplyr geodist od rlang sf]; }; simphony = derive2 { name="simphony"; version="1.0.3"; sha256="0cpp6gga0p80yd7ir1qsgnv236sp35xybp7i0h104yzhnwgcqnkb"; depends=[data_table foreach]; }; @@ -17571,15 +17840,16 @@ in with self; { simsem = derive2 { name="simsem"; version="0.5-16"; sha256="0scjb308pb8ivy5blbk1wj9d1yxcqknhvh95a3728crfq2xcqnh0"; depends=[lavaan]; }; simsl = derive2 { name="simsl"; version="0.2.1"; sha256="12dc9lcy11g1yynycvcqm62npq0v13bg6fnykb5m9ijwga4x51il"; depends=[mgcv]; }; simstandard = derive2 { name="simstandard"; version="0.6.3"; sha256="1l1vny3csrr7krfpn25rzysmwjfv6mclf51y3mq02cimcwq9fzcy"; depends=[lavaan magrittr mvtnorm purrr rlang tibble]; }; - simstudy = derive2 { name="simstudy"; version="0.7.0"; sha256="049f81kl4kbrbk9883bp14n21g3m4ps0izswl7irhamhshj1anzb"; depends=[backports data_table glue mvnfast pbv Rcpp]; }; + simstudy = derive2 { name="simstudy"; version="0.7.1"; sha256="0917x93dy3c83b0kfbsgx7qfilwik0s2fgmjkc6xmj4d7zfbsbyf"; depends=[backports data_table fastglm glue mvnfast pbv Rcpp]; }; simsurv = derive2 { name="simsurv"; version="1.0.0"; sha256="16b2a3br107hy2fc0vann9wf5h9kb5j76baa37g1sfc0h19kg6kr"; depends=[]; }; simtimer = derive2 { name="simtimer"; version="4.0.0"; sha256="1c5017xmh4767d75k4rs1pssyn7p5w41bcsjjmwk4c9g6w1jgx1w"; depends=[]; }; simtrait = derive2 { name="simtrait"; version="1.1.3"; sha256="0zwas19q7lmmmznv44km1f9wj4vq34hl5zlakfs98lkp7f0z29nx"; depends=[PRROC]; }; + simtrial = derive2 { name="simtrial"; version="0.3.2"; sha256="0d0fvrlbpj4zq32ifx7p1wd1h1xg83lkvl3mp92vck1y0ap1yd2f"; depends=[data_table doFuture foreach future mvtnorm Rcpp survival]; }; simts = derive2 { name="simts"; version="0.2.2"; sha256="12v6djqij8w0vy25pndri4kng7zq7bncvbg9h28vg1m8sk3nlfc4"; depends=[broom dplyr magrittr purrr Rcpp RcppArmadillo robcor scales tidyr]; }; simuclustfactor = derive2 { name="simuclustfactor"; version="0.0.3"; sha256="0yjcknqx44zjzk1ch8bnfbpf7dg34nwdhsmbnhyskzc67022g470"; depends=[Rdpack]; }; simukde = derive2 { name="simukde"; version="1.3.0"; sha256="0mpj8pfrlagc97v53idsiypjcpbaj07y6klanph5lkiwzsgbz8sv"; depends=[ks MASS mvtnorm]; }; simulMGF = derive2 { name="simulMGF"; version="0.1.1"; sha256="0kycpaayf9rxc53jp3157zjvynpzhn278x1rnmwhvkhp9fmhnxka"; depends=[]; }; - simulariatools = derive2 { name="simulariatools"; version="2.5.0"; sha256="09204rvpyg20gsn8gdrf9mxcz50yff8kwc51c8gz87v6kb8xyhws"; depends=[ggplot2 lubridate reshape2 reticulate scales terra]; }; + simulariatools = derive2 { name="simulariatools"; version="2.5.1"; sha256="0zzghs44yll5181mw5nqm49k4q01hzm88fqjq8fjfzza1gplrkf7"; depends=[ggplot2 lubridate reshape2 reticulate scales terra]; }; simulator = derive2 { name="simulator"; version="0.2.5"; sha256="07mzgpfy43vpf58mrc7kcwvj49f27kr7w0fgf8vv80ls3bbb859i"; depends=[magrittr]; }; simule = derive2 { name="simule"; version="1.3.0"; sha256="0jzyk1r2jfs7qivmy9x44c5bagy55jpy3hf0xpl9xnk409c3y2wd"; depends=[igraph lpSolve pcaPP]; }; sinaplot = derive2 { name="sinaplot"; version="1.1.0"; sha256="0zfq6l8wjvdj7rndsfyh0a2xjlxmn2ij1q50hg3xjfpwrjxcsck8"; depends=[plyr]; }; @@ -17594,7 +17864,7 @@ in with self; { siplab = derive2 { name="siplab"; version="1.6"; sha256="149crdvw7sz7p4sz58n1ryvv3l0pm57wbvfd93xnljw7hwwq1dvk"; depends=[spatstat spatstat_geom]; }; siqr = derive2 { name="siqr"; version="0.8.1"; sha256="0yyb4abd7lghsb1qrw61zvbll3hs4dsldkvs3syrabwhxady8w43"; depends=[KernSmooth quantreg]; }; sirad = derive2 { name="sirad"; version="2.3-3"; sha256="0vhmk2fmq4797gj6c8803zw1ipmdxfvdfgi2bygzxbn5bqd4da2n"; depends=[raster zoo]; }; - siren = derive2 { name="siren"; version="1.0.3"; sha256="02j3lbphx1mmmzrhjhk97029fnn9v10989mn69vlzp3k72k2m9z7"; depends=[EFA_MRFA lavaan psych]; }; + siren = derive2 { name="siren"; version="1.0.4"; sha256="1w4a1dkhph0ai5faxvgmvf0phnpqapmp6wlax5r38ry5p11s0ljq"; depends=[EFA_MRFA lavaan psych]; }; sirt = derive2 { name="sirt"; version="3.13-228"; sha256="1shd47snf9bxpa3jwg1qca0jxgi0hhr0yw6052yp4nljzqma095f"; depends=[CDM pbapply pbv Rcpp RcppArmadillo TAM]; }; sirus = derive2 { name="sirus"; version="0.3.3"; sha256="0whjshqwy3dhim22rj358811s3h872d861j93zlhh32ivvwj2434"; depends=[ggplot2 glmnet Matrix Rcpp RcppEigen ROCR]; }; sisVIVE = derive2 { name="sisVIVE"; version="1.4"; sha256="1vh53irxgk8ahw52cdqbbm89dvmzyf54izg4lm8a3v92k5p6nzwz"; depends=[lars]; }; @@ -17609,8 +17879,8 @@ in with self; { sitools = derive2 { name="sitools"; version="1.4"; sha256="0c0qnvsv06g6v7hxad96fkp9j641v8472mbphvaxa60k3xc7ackb"; depends=[]; }; sitree = derive2 { name="sitree"; version="0.1-13"; sha256="0v0qbzdgh1lcg7m6b5vzfwy74hvj1b61c49lq8c4az740sf34sx6"; depends=[data_table ggplot2]; }; sitreeE = derive2 { name="sitreeE"; version="0.0-8"; sha256="0jwxca8y0nn1aqx4c6gikgf31nb4dll543m0akd4jmqx6fc450kd"; depends=[data_table sitree]; }; - sits = derive2 { name="sits"; version="1.4.1"; sha256="035aq68k68vpwbib81ym4byb6m31z4h6b4hgx49qcjc3bbb6irlc"; depends=[dplyr gdalUtilities lubridate purrr Rcpp RcppArmadillo rstac sf slider terra tibble tidyr torch yaml]; }; - sivs = derive2 { name="sivs"; version="0.2.9"; sha256="0g5gw2szsnm3k71zjw0174qnznr6abnyk2nh5afhyappki4yqaia"; depends=[doParallel foreach glmnet pROC varhandle]; }; + sits = derive2 { name="sits"; version="1.4.2-1"; sha256="135qk50vbnyxnl2bkxwz00j4z36ynhiidm1yyfjvssxq3i3m6878"; depends=[dplyr gdalUtilities lubridate purrr Rcpp RcppArmadillo rstac sf showtext slider sysfonts terra tibble tidyr torch yaml]; }; + sivs = derive2 { name="sivs"; version="0.2.10"; sha256="1mf881yy1f6s4f6bx4p5010f45pg09lww3npkkp1s11zpawgmdjq"; depends=[doParallel foreach glmnet pROC varhandle]; }; sizeMat = derive2 { name="sizeMat"; version="1.1.2"; sha256="1vbndadsn80ddrg471vp1qxf0gan38w6dkjk1p2npvfb47wdjj2h"; depends=[MASS matrixStats MCMCpack]; }; sjPlot = derive2 { name="sjPlot"; version="2.8.15"; sha256="10lvn8dnckpjjpapmf0d2zwjkzjvs4iiswd3rmijzviz4ichhxjs"; depends=[bayestestR datawizard dplyr ggeffects ggplot2 insight knitr MASS parameters performance purrr rlang scales sjlabelled sjmisc sjstats tidyr]; }; sjSDM = derive2 { name="sjSDM"; version="1.0.5"; sha256="1qrslxrminbzvqkcngx875kkbaj9f2wd8svdwsd0706v5w72pisg"; depends=[abind checkmate cli crayon ggplot2 ggtern mathjaxr Metrics mgcv mvtnorm reticulate rstudioapi]; }; @@ -17620,7 +17890,7 @@ in with self; { sjstats = derive2 { name="sjstats"; version="0.18.2"; sha256="0a1y6bqyvgs0avzasr8g6vwcxcnj4d9g0rfz2qiznwadpjzqw66h"; depends=[bayestestR broom datawizard dplyr effectsize emmeans insight lme4 magrittr MASS modelr parameters performance purrr rlang sjlabelled sjmisc tidyr]; }; sjtable2df = derive2 { name="sjtable2df"; version="0.0.3"; sha256="1vb2wr122pfn6qald36mn1dkz6gygp81skl11halrwa7cvxwkl7z"; depends=[data_table kableExtra magrittr rlang rvest xml2]; }; skater = derive2 { name="skater"; version="0.1.2"; sha256="1hw6hk2v6jxhv86dzjpqnakkrbp2k7gayg2zffpyd2z8l4mpgmxd"; depends=[corrr dplyr kinship2 magrittr purrr readr rlang tibble tidyr]; }; - skedastic = derive2 { name="skedastic"; version="2.0.1"; sha256="0faj5lv6axpg8ra5pa49j9ha41cmxynhf6fc7dn5ym2g0f497k9l"; depends=[bazar broom caret CompQuadForm inflection MASS Matrix mgcv osqp pracma quadprog quadprogXT Rdpack Rfast ROI ROI_plugin_qpoases slam]; }; + skedastic = derive2 { name="skedastic"; version="2.0.2"; sha256="1ln0scwgvpif610jgwdl0rzlx41i8w2ri1vaq0kl11vg69xp5105"; depends=[bazar broom caret CompQuadForm inflection MASS Matrix mgcv osqp pracma quadprog quadprogXT Rdpack Rfast ROI ROI_plugin_qpoases slam]; }; skeletor = derive2 { name="skeletor"; version="1.0.4"; sha256="1jfbfbkjx8mdwamsrkhvcnyn470in702vgcyw3g2dbgs84gl29q8"; depends=[]; }; skellam = derive2 { name="skellam"; version="0.2.0"; sha256="0r5wbs5h7xc3k2vjxd4axwnxr9cmwm008fcyj1vyixkg8fa680gx"; depends=[]; }; sketch = derive2 { name="sketch"; version="1.1.19"; sha256="0dq5llbjnvpgzwwp14fqddmmrw6lsis23g21lx4glwmh23j4m1qp"; depends=[base64enc glue htmltools jsonlite magrittr purrr rlang rstudioapi shiny V8]; }; @@ -17636,8 +17906,8 @@ in with self; { sklarsomega = derive2 { name="sklarsomega"; version="3.0-2"; sha256="027rx1x5hsn0qx7s6s2sqf13p49jbhi6g7w0fzfqf619p3fzkghg"; depends=[dfoptim extraDistr hash LaplacesDemon Matrix mcmcse numDeriv spam]; }; skm = derive2 { name="skm"; version="0.1.5.4"; sha256="06g3bdncq2r56d8k3dr87gqnibypbsps0gj4jxkw9q1sq1yaff3v"; depends=[data_table magrittr plyr Rcpp RcppArmadillo RcppParallel]; }; skmeans = derive2 { name="skmeans"; version="0.2-16"; sha256="0rigfkjq41ivj2hz35rqak23mmzyz15ic5izzkm3vxbwhsmk9ars"; depends=[clue cluster slam]; }; - skpr = derive2 { name="skpr"; version="1.4.0"; sha256="1f5n392w155v9p1slcxl6i0mv1kgi5zn9kjqc6da7c4rafjxzrm3"; depends=[car doParallel doRNG foreach future gt iterators lazyeval lme4 lmerTest magrittr progress promises Rcpp RcppEigen rintrojs scales shiny shinyjs shinythemes survival viridis]; }; - skylight = derive2 { name="skylight"; version="1.1"; sha256="06snpj5jdr5wzv87587izvkxnxn24xl11jm7l2x2sj6s6rw16p9w"; depends=[]; }; + skpr = derive2 { name="skpr"; version="1.6.1"; sha256="12hh7ws15rdiwd2fjl81f5rvfryzhdxnj1rkgj2cwd3mns8izrlq"; depends=[car doFuture doParallel doRNG foreach future iterators lazyeval lme4 lmerTest magrittr progress progressr Rcpp RcppEigen scales survival viridis]; }; + skylight = derive2 { name="skylight"; version="1.2"; sha256="1yh3hk1z4c25pkb9gzyc16a68jd1za4h9z4l9xh5avkg68ixff5j"; depends=[]; }; skynet = derive2 { name="skynet"; version="1.4.3"; sha256="08a5p3rk0qhsxawdxj5sfw07rdk56x6viy37w1b0hxqaxxxv239i"; depends=[data_table dplyr geosphere ggplot2 ggrepel httr igraph leaflet maps RCurl stringr]; }; skyscapeR = derive2 { name="skyscapeR"; version="1.0.0"; sha256="1x3s003wdmnf0h1k3gl6cvd35g516y7v2yzahr3wxk2np832kjli"; depends=[doParallel foreach httr MESS numDeriv oce plotrix png RColorBrewer rootSolve swephR zoo]; }; slackr = derive2 { name="slackr"; version="3.3.1"; sha256="08yyl0s2rb7yzq9zd173avdxrl8z59dknsxbmgg4m94wf09xwy55"; depends=[cachem dplyr httr jsonlite magrittr memoise rlang tibble withr]; }; @@ -17651,8 +17921,8 @@ in with self; { sleepr = derive2 { name="sleepr"; version="0.3.0"; sha256="1ka4pl6a09d1qga5svcirc5ywmzz9pcml09053745lz3p1v8fnn3"; depends=[behavr data_table]; }; sleepwalk = derive2 { name="sleepwalk"; version="0.3.2"; sha256="1y0945r9ksz8x6w5rx31sm9x2q2ydd9sc1fwa0paq5f11hygss5d"; depends=[cowplot ggplot2 httpuv jrc jsonlite scales]; }; sleev = derive2 { name="sleev"; version="1.0.3"; sha256="0irc0k4asml5vfqwkv5rxw6xv1dj6sllravyggg49cdqfbhwcv3w"; depends=[Rcpp RcppArmadillo RcppEigen]; }; - slendr = derive2 { name="slendr"; version="0.7.2"; sha256="12kv49i36fpfpps5kx5x6wvdy7k6zn4ybnsimaa4kqcgd704vq3w"; depends=[ape dplyr ggplot2 ijtiff magrittr png purrr readr reticulate scales shiny shinyWidgets tidyr]; }; - slfm = derive2 { name="slfm"; version="1.0.1"; sha256="0s7fdvr4fvsb4789f9ly2x820g4xvabl04wk7k6i8pd5ckj2xjhy"; depends=[coda lattice Rcpp RcppArmadillo]; }; + slendr = derive2 { name="slendr"; version="0.8.0"; sha256="03zr1s49m630rsw6klr85wk4pfxi72czlhr7plp7jzrf4x06mqq9"; depends=[ape dplyr ggplot2 ijtiff magrittr png purrr readr reticulate scales shiny shinyWidgets tidyr]; }; + slfm = derive2 { name="slfm"; version="1.0.2"; sha256="1xrla1c91x636vi55ajhaiz10293bppxylpm2jqrmfgs9gh2rbrn"; depends=[coda lattice Rcpp RcppArmadillo]; }; slgf = derive2 { name="slgf"; version="2.0.0"; sha256="07gkl35hq3w42kw103gn9f15s0z4n49nq39ip1nzm3s6d1ad6in6"; depends=[numDeriv Rdpack]; }; slickR = derive2 { name="slickR"; version="0.6.0"; sha256="01p72l3h8izg9pphjhkm83rgfsvlimf8aa5asa5lfgfbma60ivhb"; depends=[base64enc checkmate htmltools htmlwidgets lifecycle xml2]; }; slider = derive2 { name="slider"; version="0.3.1"; sha256="1c19lk0ddh5qh0jzx7178l314zyygmlpmbvn7670bcmdbxwjc2i0"; depends=[cli rlang vctrs warp]; }; @@ -17666,7 +17936,7 @@ in with self; { slouch = derive2 { name="slouch"; version="2.1.4"; sha256="09ffx657hs913prv0rifhsz60h39lk0h4z28myx6yzxcfdk4f48d"; depends=[ape crayon memoise]; }; slowraker = derive2 { name="slowraker"; version="0.1.1"; sha256="0glc3ldvbqkvzfvhs4s5mzx1kfz05px4k7rx5jfp9dm9d0gfpvsx"; depends=[NLP openNLP SnowballC]; }; slp = derive2 { name="slp"; version="1.0-5"; sha256="0i9iv0s1wdp9cyzr8qixh6c7qvrj025vll13gyf8dfbidrp6hryl"; depends=[mgcv]; }; - slr = derive2 { name="slr"; version="1.1.0"; sha256="0wy6v5hh6w529i1q77l87cq48f3shcbwc36blymdf69v6nc3gs2n"; depends=[ibd MASS]; }; + slr = derive2 { name="slr"; version="1.2.0"; sha256="0zn9zs0i07f8qf0sm4szcrh2y95syv9idmxm26ydnz998ljpjzdg"; depends=[gmp ibd MASS]; }; slurmR = derive2 { name="slurmR"; version="0.5-4"; sha256="1akwdpv3235l9hrqrhlkd8m3l7dbrq6h2nq29jr6mimlp8jvk5g7"; depends=[]; }; sm = derive2 { name="sm"; version="2.2-5.7.1"; sha256="0mql7rlm8wkdwmx1lv7pscdk9ibvsdpfdv8bpaz1hv2gn4pc637a"; depends=[]; }; smaa = derive2 { name="smaa"; version="0.3-2"; sha256="0cv6xa6miy45pj0lskg70bq7bmwxdprwjl51ghlxgifkv1qdxqhc"; depends=[]; }; @@ -17674,12 +17944,13 @@ in with self; { smacofx = derive2 { name="smacofx"; version="0.6-6"; sha256="0i4v3qbizqniaf92nv2q2860k454hwnhqb789p0nkkcyh9wgyrc9"; depends=[MASS minqa plotrix ProjectionBasedClustering smacof vegan weights]; }; smacpod = derive2 { name="smacpod"; version="2.6"; sha256="193mqxk17ygr518p2mvk9wnj3hnckxay9jz85ng00kz2kaykdpd6"; depends=[abind pbapply plotrix smerc spatstat_explore spatstat_geom spatstat_random]; }; smallarea = derive2 { name="smallarea"; version="0.1"; sha256="0jcv0xbh8v4g6zxxs4yyd0divwzk9d2w7g01r4s65khxvy3av7yx"; depends=[MASS]; }; - smallsets = derive2 { name="smallsets"; version="1.0.0"; sha256="19v4ikfa1fbj9qvhp63vbw13qsgfx879x8j451sfcgl7km1d7xc9"; depends=[colorspace flextable ggplot2 ggtext patchwork plotrix reticulate]; }; + smallsets = derive2 { name="smallsets"; version="2.0.0"; sha256="13w7vdjg6pqq509r1jlmwi3z9qldq6damiy439dmm6wanmp9ybd6"; depends=[callr colorspace flextable ggplot2 ggtext knitr patchwork plotrix reticulate rmarkdown]; }; smallstuff = derive2 { name="smallstuff"; version="1.0.1"; sha256="0zqwxmazk4nb8sgwwkymaap3l9pfzw3mqbmfzvj0wn7wzjsx10cx"; depends=[class data_table igraph matlib Matrix pryr ROCR]; }; - smam = derive2 { name="smam"; version="0.7.0"; sha256="0xl38rncsfl0rsb560pvvshya22qc9rgpd2r9z86yzwa8mvfgqpx"; depends=[doParallel doSNOW EnvStats foreach Matrix nloptr numDeriv Rcpp RcppGSL RcppParallel]; }; + smam = derive2 { name="smam"; version="0.7.1"; sha256="1p7rqrbqdqgar5ryij0mx5vxd0ls7rdfc6k73nbxqz8hlx95p0xa"; depends=[doParallel doSNOW EnvStats foreach Matrix nloptr numDeriv Rcpp RcppGSL RcppParallel]; }; smapr = derive2 { name="smapr"; version="0.2.1"; sha256="1gcq66gs6968c5h303dqd2jyw2rcdwxv642ki1cmpdj6ix665dpr"; depends=[httr rappdirs raster rhdf5 rvest xml2]; }; smartDesign = derive2 { name="smartDesign"; version="0.72"; sha256="1mq8h2zwj8mrq4s2bl3s6hzizpdjbl69c984hydxvzx2vgq1v8za"; depends=[knitr]; }; smartmap = derive2 { name="smartmap"; version="0.1.1"; sha256="0pxbjkkknng7xa8ihba69n1a2w9052fsbb0w8fq1y1qrqmmibwdi"; depends=[leaflet magrittr sf]; }; + smartsheetr = derive2 { name="smartsheetr"; version="0.1.0"; sha256="1331fiapyvf6jbj6hgasascfy9alix5ylcy7nh99z1qcdl2asck7"; depends=[dplyr httr jsonlite memoise purrr rlang tibble tidyr]; }; smartsizer = derive2 { name="smartsizer"; version="1.0.3"; sha256="1jfhba8p5flz4v0m770kb3p2gw4vgzpxqb0ngl9fhw30jzkx6nwd"; depends=[MASS]; }; smartsnp = derive2 { name="smartsnp"; version="1.1.0"; sha256="1gzzhys6bja55iclkji254kri6r3iamiw7bv881mp615wi9r3hx2"; depends=[bootSVD data_table foreach Rcpp RcppArmadillo Rfast RSpectra vegan vroom]; }; smatr = derive2 { name="smatr"; version="3.4-8"; sha256="0qqqbg65flxh48sw7x90zvgzbpcfzb1811h0pz3zlhdw9a7khs9n"; depends=[]; }; @@ -17691,15 +17962,15 @@ in with self; { smdi = derive2 { name="smdi"; version="0.2.2"; sha256="0bjwh9qbcr8221k43gayridqrsr3sf7mwgvlwy76k9dmjr0bid63"; depends=[broom dplyr fastDummies forcats ggplot2 glue gt Hotelling lifecycle magrittr mice naniar pROC randomForest stringr survival tableone tibble tidyr tidyselect]; }; smdocker = derive2 { name="smdocker"; version="0.1.4"; sha256="13jkd81irk32m1w9djsgsgl79s8i9ynz10j7m8imqpk402zc7cbd"; depends=[jsonlite paws_compute paws_developer_tools paws_machine_learning paws_management paws_security_identity paws_storage uuid zip]; }; smerc = derive2 { name="smerc"; version="1.8.3"; sha256="181av1l1r327iszxrihilvfiqbc4m4496g94i5r9vhhamvgk8cwm"; depends=[pbapply Rcpp RcppProgress]; }; - smetlite = derive2 { name="smetlite"; version="0.2.9"; sha256="1rhadp3yddw6pnyqjk8g3rzidb1kfb8r0za7yra2fyryjwiaajz8"; depends=[readr stringr]; }; + smetlite = derive2 { name="smetlite"; version="0.2.10"; sha256="1q7fqfdd6m7jv5waajmmsc7ql16lcyy6z2k41mz6gvdqz914gg16"; depends=[readr stringr]; }; smfishHmrf = derive2 { name="smfishHmrf"; version="0.1"; sha256="1k6mpyp11zv5rc3k98baymr903p2pf424nf9xng20q1li8s8y2ab"; depends=[fs pracma Rdpack]; }; - smfsb = derive2 { name="smfsb"; version="1.3"; sha256="1328w7zpwd3nam6ha4bh14g919jjl87v323ijmbp1j71gc64nn2i"; depends=[abind]; }; - smicd = derive2 { name="smicd"; version="1.1.2"; sha256="1v80sshsp3qlc1y7yz1pl4s2jk6khdsli3z2v0cjxfsv1izfd02x"; depends=[formula_tools Hmisc ineq laeken lme4 MuMIn mvtnorm truncnorm weights]; }; + smicd = derive2 { name="smicd"; version="1.1.3"; sha256="070dbi637rk6c938fljmwfhz4lpc4n09gj8lkbvbvdsb7m8bjk73"; depends=[formula_tools Hmisc ineq laeken lme4 MuMIn mvtnorm truncnorm weights]; }; smidm = derive2 { name="smidm"; version="1.0"; sha256="1a26y70mb5qzl1zjaicvnb8i7z3r94qqzda2cpac776h1w35zy51"; depends=[dplyr extraDistr]; }; smile = derive2 { name="smile"; version="1.0.4.1"; sha256="0781rzkqwpqnl22phxdcf533p55pshfp4v01k8d1bhd5yvr13y7k"; depends=[Matrix mvtnorm numDeriv Rcpp RcppArmadillo sf]; }; smirnov = derive2 { name="smirnov"; version="1.0-1"; sha256="09mpb45wj8rfi6n6822h4c335xp2pl0xsyxgin1bkfw97yjcvrgk"; depends=[]; }; smlmkalman = derive2 { name="smlmkalman"; version="0.1.1"; sha256="1ns717rq0vipplh3l2ypinrscv3bjv86j68aw53ygs6g59h0v2vp"; depends=[pracma scales spdep truncnorm]; }; smmR = derive2 { name="smmR"; version="1.0.3"; sha256="0b6w2k5j65jdngc871ch9ragr7qgwbkl4nhk3gqnbpvkr9m4x88f"; depends=[DiscreteWeibull Rcpp RcppArmadillo seqinr]; }; + smof = derive2 { name="smof"; version="1.0"; sha256="0b0cwg9s5l0vypwncqbmqq8wj6wqmn09dknm3f5jv1qw2fffs9d5"; depends=[]; }; smog = derive2 { name="smog"; version="2.1.0"; sha256="1mnnvp6crjwwiym16q4hmn9zwna1gblwqjlan4x9zyvgp1j70k26"; depends=[doParallel dplyr foreach ggplot2 magrittr Rcpp RcppArmadillo Rdpack rmarkdown tidyr]; }; smoke = derive2 { name="smoke"; version="2.0.0"; sha256="1jdl5swg66vqryd40rrqpsnkczmsiaf5x6vlfv774vbnrc6q2v2g"; depends=[Rdpack]; }; smoof = derive2 { name="smoof"; version="1.6.0.3"; sha256="1cazhnd0m5jjzixaqgqh2h3rsa2sw3k8slj5cmgm8v47aaqn91mg"; depends=[BBmisc checkmate ggplot2 ParamHelpers Rcpp RcppArmadillo]; }; @@ -17707,6 +17978,7 @@ in with self; { smoothAPC = derive2 { name="smoothAPC"; version="0.3"; sha256="11f34qqdm8m0hmy9jf29q439slchvmqgdfrmak7vcdhfnjcylr5r"; depends=[colorspace lmtest quantreg rgl SparseM]; }; smoothHR = derive2 { name="smoothHR"; version="1.0.4"; sha256="0i668qsrava00j91m2bsh1y1rflqmyhbrgmwllyy94l1a0xn6j9r"; depends=[survival]; }; smoothROCtime = derive2 { name="smoothROCtime"; version="0.1.0"; sha256="03iihjxb5xdaf74cm9cajqqjli754mdmv5v1y4hla9vv23017ca1"; depends=[ks]; }; + smoothSurv = derive2 { name="smoothSurv"; version="2.6"; sha256="1fw5ibcsr13n3ycs1rkcnd3x08qgxz31hzfra6hpjkzcavcxdlk4"; depends=[survival]; }; smoothedLasso = derive2 { name="smoothedLasso"; version="1.6"; sha256="0007i40a12jgavgd95fbpiil1s331qd05ww6v19l49lbnlk3ldxg"; depends=[Matrix Rdpack]; }; smoother = derive2 { name="smoother"; version="1.1"; sha256="0nqr1bvlr5bnasqg74zmknjjl4x28kla9h5cxpga3kq5z215pdci"; depends=[TTR]; }; smoothic = derive2 { name="smoothic"; version="1.2.0"; sha256="11id442cgnk6a0nd0c20rz5ccxlq3hhpsmvmlvg93jf4v6c2046z"; depends=[data_table dplyr ggplot2 MASS numDeriv purrr rlang stringr tibble tidyr toOrdinal]; }; @@ -17718,7 +17990,7 @@ in with self; { smoots = derive2 { name="smoots"; version="1.1.4"; sha256="1drlnh22gn6fdziplnja5w7gc5lyvpjq54aqqmwfh6h78ivcg0vs"; depends=[future future_apply progress progressr Rcpp RcppArmadillo]; }; smosr = derive2 { name="smosr"; version="1.0.1"; sha256="1arj4skjqnwfk4yr26iwp1j9pjp75xk18hap0ff1wqpxmvajlmgj"; depends=[fields lubridate ncdf4 RCurl terra tidyr]; }; smotefamily = derive2 { name="smotefamily"; version="1.3.1"; sha256="062yps71bqnyff1hzqb7yvigvqg2lnc24r9gfp8m3zhvmyprk3cp"; depends=[dbscan FNN igraph]; }; - smovie = derive2 { name="smovie"; version="1.1.5"; sha256="1pr9aqnwn5f9akrpdf8xx2w502c3zqgjj1gzh7aavqb3irsph5ji"; depends=[rpanel]; }; + smovie = derive2 { name="smovie"; version="1.1.6"; sha256="0a2npwp8bwkqqwpdb99mm993na282qaj63xhwf1s8bwvia4q4npp"; depends=[rpanel]; }; smpic = derive2 { name="smpic"; version="0.1.0"; sha256="0ff2146gjcrc6nvrbf4779jh076abhb843zzlk2zvqir13qfap61"; depends=[ggplot2 imager stringr]; }; sms = derive2 { name="sms"; version="2.3.1"; sha256="0vr5jy8bxbczaqr9kg0fnanxhv9nj51yzgacrb63k33cs85p981m"; depends=[doParallel foreach iterators]; }; smss = derive2 { name="smss"; version="1.0-2"; sha256="04lgfdcvnzpnpplyl62fy7slyiy8wkqpjjrzmclgqis3c9zkkncp"; depends=[]; }; @@ -17726,8 +17998,8 @@ in with self; { smvgraph = derive2 { name="smvgraph"; version="0.1.2"; sha256="06pvnrhd3q913nxhk1icj11xkd1is3qi31b0kv6zbc0qkixn1ym7"; depends=[DescTools fmsb MASS shiny shinydashboard sortable]; }; sn = derive2 { name="sn"; version="2.1.1"; sha256="1g92vwbg0kqnqpsgianid2r91334p5shi39hr26v2z6wj5nvbxpr"; depends=[mnormt numDeriv quantreg]; }; snSMART = derive2 { name="snSMART"; version="0.2.3"; sha256="0d05wn2w9x7gapaz94zpf251rh2mld8agsir3hqbzjyil14xrpv6"; depends=[bayestestR condMVNorm cubature EnvStats geepack HDInterval pracma rjags tidyr truncdist]; }; - sna = derive2 { name="sna"; version="2.7-1"; sha256="1qqaazcc8x925bwa9yllwyv98ddpdqgdq026h0ss6vsvq4bz5nk0"; depends=[network statnet_common]; }; - snahelper = derive2 { name="snahelper"; version="1.4.1"; sha256="1krmaynhvbbdvyy55h2b1h9w9pw1gjkd2ha4prhcm836rmvyb6av"; depends=[colourpicker DT formatR ggplot2 ggraph graphlayouts igraph miniUI rstudioapi shiny]; }; + sna = derive2 { name="sna"; version="2.7-2"; sha256="1kd7qxdc8wy8d385yddj6rs0xc6lkn8hpra3wy4r7svzjqk4c8bv"; depends=[network statnet_common]; }; + snahelper = derive2 { name="snahelper"; version="1.4.2"; sha256="04l6ad4rj45kr7p98nbpsqbqppv2bgp71n6zph0aqm6b13hp0jyy"; depends=[colourpicker DT formatR ggplot2 ggraph graphlayouts igraph miniUI rstudioapi shiny]; }; snakecase = derive2 { name="snakecase"; version="0.11.1"; sha256="0888fng8zwm2zmi7rap9hc2q2x2gnhz8gyr35wwjx93w6f8rfpra"; depends=[stringi stringr]; }; snap = derive2 { name="snap"; version="1.1.0"; sha256="02bvs1r72y59p33a7yj1rqw75h08pvl794hdvvm15jzq1hy6j0ra"; depends=[CORElearn dbscan dplyr forcats ggplot2 keras purrr readr reticulate stringr tensorflow tictoc]; }; snapKrig = derive2 { name="snapKrig"; version="0.0.2"; sha256="1rgfz1kxlgp3an4cd37mhjn47hkjms0c6m2469wcbcw0xqjii9ld"; depends=[]; }; @@ -17741,9 +18013,10 @@ in with self; { snow = derive2 { name="snow"; version="0.4-4"; sha256="1j8kvf3imxijsqkdjz4i9s7qggfxqrpas46y5wz6za92y937yn44"; depends=[]; }; snowFT = derive2 { name="snowFT"; version="1.6-1"; sha256="0y7ql23vv5qdx0pgblfybjwxc0rgvv7z868c6axgy78xrzm6qjd1"; depends=[rlecuyer snow]; }; snowboot = derive2 { name="snowboot"; version="1.0.2"; sha256="0jj3p0g4rwml8vmlwj10rfisxfjlipcrpvq5z134z4j35jp6ggv3"; depends=[igraph Rcpp Rdpack]; }; - snowfall = derive2 { name="snowfall"; version="1.84-6.2"; sha256="0frmasv04wd47h04zbwaryhiyxllarf3ggpa39p5qicjp6r7lilv"; depends=[snow]; }; + snowfall = derive2 { name="snowfall"; version="1.84-6.3"; sha256="0hxip3rzv7slxvif1000avbcid2mjxj1y9mimyvk87h404mr6h96"; depends=[snow]; }; snowflakes = derive2 { name="snowflakes"; version="1.0.0"; sha256="0adna9jfs0wv4dhyjczxhq7c0ldjfai07p1q9119avxyilv9x0vi"; depends=[]; }; snowquery = derive2 { name="snowquery"; version="1.0.0"; sha256="0dkalqpfnqgjkaancljyksn83cqbvzxx8j2998wlg9kmrkjvw6kk"; depends=[DBI reticulate RPostgres yaml]; }; + snpAIMeR = derive2 { name="snpAIMeR"; version="2.1.0"; sha256="1x4sp1kq54x6bms73qqmndzvhlsrs8r4f1dl5abac40a38xidhdg"; depends=[adegenet doParallel dplyr forcats foreach ggplot2 magrittr readr tidyr withr yaml]; }; snpReady = derive2 { name="snpReady"; version="0.9.6"; sha256="1r96j8zh84dn7qh3zgl0p0v3a80hx2wd3c4jgjlr43hzl7yglpqr"; depends=[impute Matrix matrixcalc rgl stringr]; }; snplinkage = derive2 { name="snplinkage"; version="1.0.0"; sha256="112wg2gnr4ikj916nb71sm39g41ls05d4j56hhml9hfnkiv76x5p"; depends=[gdsfmt ggplot2 gtable GWASTools magrittr]; }; snplist = derive2 { name="snplist"; version="0.18.2"; sha256="1sa2s3br4agx920jpr250iih61p99v500nh0c1w99w0846g9908c"; depends=[biomaRt DBI R_utils Rcpp RSQLite]; }; @@ -17755,18 +18028,18 @@ in with self; { socceR = derive2 { name="socceR"; version="0.1.1"; sha256="1vd0r3vixavg1br2q3kfn3nvl7dw854vkcfwcvyw411k84ivb13y"; depends=[Rcpp]; }; social = derive2 { name="social"; version="1.0"; sha256="0ny81bhj80rlwwa6cgbkdz2rxz6bp0f3nvjr1sqxr4s8l8rnf4ic"; depends=[Rcpp]; }; socialh = derive2 { name="socialh"; version="0.1.1"; sha256="134jdhnnjxgnc8k1ws7pni5g44imxblngf106rwp8ff5a2gmrf6c"; depends=[circlize data_table dplyr ggplot2 magrittr]; }; - socialmixr = derive2 { name="socialmixr"; version="0.3.0"; sha256="0whhpjsbhwnjbv6mvr227g347k52ak2jmdp2kll87m8phh48qd0s"; depends=[countrycode curl data_table fields httr jsonlite lubridate oai wpp2017 xml2]; }; - socialranking = derive2 { name="socialranking"; version="1.0.1"; sha256="0vfjhliha69rqa94y6y0g5yx4ni1cnfpsgf2h8nccypq6m3rcgjr"; depends=[Rdpack relations rlang]; }; + socialmixr = derive2 { name="socialmixr"; version="0.3.1"; sha256="1idkc4gsf5jnirgvnrcj9ciaz11r1kqkh7167jfly7wm5r31r3y3"; depends=[countrycode curl data_table fields httr jsonlite lubridate oai wpp2017 xml2]; }; + socialranking = derive2 { name="socialranking"; version="1.1.0"; sha256="0mhm1981nixa6vlkjnjsc292pkypjx666sz8p5sxv75zpajxjzfw"; depends=[Rdpack relations rlang]; }; socialrisk = derive2 { name="socialrisk"; version="0.5.1"; sha256="1v9hvrqwihfprs32pplxsv00myf0p5pa32601s8s826jss3fkx4w"; depends=[dplyr magrittr rlang stringr tidyr tidyselect]; }; - sociome = derive2 { name="sociome"; version="2.2.1"; sha256="0s9ffh9g5ydjglvrc14zhp6im0dz5mq64yakby2myjx670mwwl9w"; depends=[dplyr magrittr mice psych purrr rlang stringr tidycensus tidyr]; }; + sociome = derive2 { name="sociome"; version="2.2.5"; sha256="1fyimv1i83ck7hwb7nnbdk46fiasi4kb8h944dni73536mnhc57g"; depends=[dplyr magrittr mice psych purrr rlang stringr tidycensus tidyr]; }; socviz = derive2 { name="socviz"; version="1.2"; sha256="1294xwy26vshmaiw3pkx3f90j8g6fv64gygv88b7lnz6fhai1nq5"; depends=[dplyr fs magrittr rlang tibble]; }; sodavis = derive2 { name="sodavis"; version="1.2"; sha256="1jf5sml51qxlpgv5b1rvyig4dm4ijw2hpnk85zf790jp22xm64jw"; depends=[MASS mvtnorm nnet]; }; - sodium = derive2 { name="sodium"; version="1.3.0"; sha256="0b10cbzpybbjwhrbdx2ldjg8gb3cgzra533x6rn3d52zy1sqs6l8"; depends=[]; }; + sodium = derive2 { name="sodium"; version="1.3.1"; sha256="0cbj7mgchi42ri6h1fc24asj7lkcn9n3l0zbabrx89s9zi4im0gx"; depends=[]; }; sofa = derive2 { name="sofa"; version="0.4.0"; sha256="1w78f8pnx4vh6znpwwcy9k4j795zji4bv88mi6ihdv09ar7if7yv"; depends=[crul jsonlite mime R6]; }; softImpute = derive2 { name="softImpute"; version="1.4-1"; sha256="1v2a4d688ij5zcvkzpra9yx40xckdfnllnfnyq2450zf3n1kjk7a"; depends=[Matrix]; }; softbib = derive2 { name="softbib"; version="0.0.2"; sha256="0rhia0vx53lhmykf2rmnr9kbcvld35n2and1l3riqdfr6jrdg8pb"; depends=[bibtex checkmate renv rmarkdown]; }; softclassval = derive2 { name="softclassval"; version="1.0-20160527"; sha256="1f5qj5sajy3dg0mgss6f9w6v5a2prcypld9jcv457bd4n4a409kr"; depends=[arrayhelpers svUnit]; }; - soilDB = derive2 { name="soilDB"; version="2.7.8"; sha256="1n6yf0zl3l7g0i4nra4i5as3v7f1g6n93fib6a97cc1cnjkqhh2d"; depends=[aqp curl data_table DBI]; }; + soilDB = derive2 { name="soilDB"; version="2.8.0"; sha256="1y2hqvw3gs5ams9xw0r1w8w4y1m4sqwdaaf0c4d1n5dcghhjn3pa"; depends=[aqp curl data_table DBI]; }; soilassessment = derive2 { name="soilassessment"; version="0.2.6"; sha256="0cgyji88q3r6b57q32nk8xgxb4q29678h8zgh9ywxhr3mr40i0qv"; depends=[caret deSolve e1071 FuzzyAHP googledrive Hmisc nnet png randomForest raster sf soiltexture sp terra]; }; soilchemistry = derive2 { name="soilchemistry"; version="0.1.0"; sha256="1fkq5zpkcwh7ps2r79kc2pw7q2i4hjjnckx2f29l8064hswd9jc4"; depends=[]; }; soilfoodwebs = derive2 { name="soilfoodwebs"; version="1.0.2"; sha256="09nc2ywxk8kl0akdwxz5zddrnqljvqpixjaz2bjkpxy0xj0qd82l"; depends=[deSolve diagram lpSolve quadprog rootSolve stringr]; }; @@ -17787,7 +18060,7 @@ in with self; { som_nn = derive2 { name="som.nn"; version="1.1.0"; sha256="0mw2c2lqvdq9bhndpjyawjy43l4x7clcsx2350j45g7fnchhy602"; depends=[class hexbin kohonen som]; }; soma = derive2 { name="soma"; version="1.2.0"; sha256="05hm6yqh1d10kbgvy5j0cj2lvcnib4p9lmjcl32zxy1hazpagplq"; depends=[reportr]; }; someMTP = derive2 { name="someMTP"; version="1.4.1.1"; sha256="197ajnnp92qh807a55z0i9z8nw0vmf5vvr216nxjwa2l9kw8c84k"; depends=[]; }; - sommer = derive2 { name="sommer"; version="4.3.2"; sha256="040gvhmhkqc0d5rq54h2avfhd924q570vshc7lxkljnljlc0izly"; depends=[crayon MASS Matrix Rcpp RcppArmadillo RcppProgress]; }; + sommer = derive2 { name="sommer"; version="4.3.3"; sha256="1kprflzhfq63jzf37v9wd0nigp19nxb5f7py35p7h70v4kcdv27c"; depends=[crayon MASS Matrix Rcpp RcppArmadillo RcppProgress]; }; somspace = derive2 { name="somspace"; version="1.2.4"; sha256="1268sj89cbkp2nm0i905s991a92w4aki93hxia2vqk6fdh200rdl"; depends=[data_table ggplot2 kohonen maps reshape2]; }; sonar = derive2 { name="sonar"; version="1.0.2"; sha256="1f0f5iqi3y9vnxyym14nm8dqxw0vcpnxmvvkx4sm612i4fclg1f9"; depends=[]; }; sonicLength = derive2 { name="sonicLength"; version="1.4.7"; sha256="1wvdcjk641kcmflda0mibqr519qbqgb26mgwibjhm6pzgvwpy2dg"; depends=[]; }; @@ -17795,27 +18068,27 @@ in with self; { sonify = derive2 { name="sonify"; version="0.0-1"; sha256="1wkqqgf8fhhaz1dmri2zzr8cdwmx3cgrxbprrz3yily5r1m17d15"; depends=[tuneR]; }; soptdmaeA = derive2 { name="soptdmaeA"; version="1.0.0"; sha256="03n1y82myq0rz14awjnx9nx1dz3dxqq58m13cw7a7ncap7fmw9r5"; depends=[igraph MASS Matrix]; }; soql = derive2 { name="soql"; version="0.1.1"; sha256="12wvbxy9xx140b7mga4ma7hkg4q6kv549gkq15fnf4dn8q43x8nf"; depends=[]; }; - sorcering = derive2 { name="sorcering"; version="0.9.2.3"; sha256="018zrk82qsickxkimm7hbzayixqfzw32fsi080las52rg0i0agin"; depends=[mathjaxr Rcpp RcppArmadillo Rdpack]; }; + sorcering = derive2 { name="sorcering"; version="1.0.0.1"; sha256="1av5hi2qs1yrcxgfr7g1c1pv32ljza6jiapkxy10lvlbnkk3by15"; depends=[mathjaxr Rcpp RcppArmadillo Rdpack]; }; sorocs = derive2 { name="sorocs"; version="0.1.0"; sha256="0gy23rldhnlz6jmf9rdzl4mmfkn5gjcavq2jfcz6dgjafl3v9vgl"; depends=[MASS MCMCpack mvtnorm]; }; sortable = derive2 { name="sortable"; version="0.5.0"; sha256="1y6cljcjai2k2j7abzn07ab170gpp25zvl9gk755l4gwi7clgl2c"; depends=[assertthat ellipsis htmltools htmlwidgets jsonlite learnr rlang shiny]; }; sorvi = derive2 { name="sorvi"; version="0.8.21"; sha256="0l8lznn2vnnyzq3i1hab7lcylmhkn9mpzrdymdmai4w2khg8r43b"; depends=[checkmate dlstats dplyr ggplot2 gh lubridate magrittr purrr rlang rvest sf tidyr xml2]; }; sos = derive2 { name="sos"; version="2.1-7"; sha256="11q698wr3xnzr0nmzb9frifrizfl27f1ymdi6mrvyzw0y9cv3sq6"; depends=[brew]; }; sotkanet = derive2 { name="sotkanet"; version="0.9.79"; sha256="1d6g09rf7irk3d8hkm6ahp8zl6lj24jnipwvzr0njx2sqi3fwd4f"; depends=[curl httr jsonlite]; }; sotu = derive2 { name="sotu"; version="1.0.4"; sha256="0hx37as51q3rk7z9vp8awhkj7a87nwd2jlp1hvfkli2j6l07sk7d"; depends=[]; }; - sound = derive2 { name="sound"; version="1.4.5"; sha256="1kbbb614d0fmj9l0yjiwf5yqnl7sby4xklp7qwp6rwjvq9bnm0ab"; depends=[]; }; + sound = derive2 { name="sound"; version="1.4.6"; sha256="14jk5lg73v3gvnyvam3bsbcayawprasvlvaxwqryh148brqgfcrd"; depends=[]; }; soundClass = derive2 { name="soundClass"; version="0.0.9.2"; sha256="0z697asv2kzs93b45ndbkxfdzq3fmi1f6aprvpxps4x354gg2pi6"; depends=[DBI dbplyr dplyr generics htmltools keras magrittr RSQLite seewave shiny shinyBS shinyFiles shinyjs signal tuneR zoo]; }; soundcorrs = derive2 { name="soundcorrs"; version="0.4.0"; sha256="1azvsv3bghlab8q24wbb6xwd5a4cydx1cagvhk8h0h5ib9957zab"; depends=[]; }; soundecology = derive2 { name="soundecology"; version="1.3.3"; sha256="16h6gbdlyav7wbfisdv1f2zsqhr45liidgj7qqk8giwjxgan8q97"; depends=[ineq oce pracma seewave tuneR vegan]; }; - soundgen = derive2 { name="soundgen"; version="2.6.1"; sha256="005b9l99yfl6n2sn6s90zzi77jpnsv0g4brd0302rdcz7lnqf9yz"; depends=[data_table doParallel dtw foreach mvtnorm nonlinearTseries phonTools seewave shiny shinyBS shinyjs signal tuneR zoo]; }; + soundgen = derive2 { name="soundgen"; version="2.6.2"; sha256="15db2zdy90kbc4qx5wcnx90ks9ijc8c1znz4a6rkq16sf12p39jd"; depends=[data_table doParallel dtw foreach mvtnorm nonlinearTseries phonTools seewave shiny shinyBS shinyjs signal tuneR zoo]; }; sourcetools = derive2 { name="sourcetools"; version="0.1.7-1"; sha256="1l9i9ram12pjks8h2gzmj119wf4ixwyhljsfv289dn8dgbdjp0cn"; depends=[]; }; sovereign = derive2 { name="sovereign"; version="1.2.1"; sha256="1v5cchwia8v9h4fpb506v6nikp5k042axmryjmqrgimaly8dk9nv"; depends=[broom dplyr furrr future ggplot2 gridExtra lmtest lubridate magrittr mclust purrr randomForest sandwich stringr strucchange tidyr xts zoo]; }; - sox = derive2 { name="sox"; version="1.0"; sha256="1rg1658jz6sc8dfp5gd8dmnxl747mw02zz24r7231vjmdwc60bl5"; depends=[glmnet Rcpp survival]; }; - sp = derive2 { name="sp"; version="2.1-1"; sha256="0ns0n4929db2g8wjmg8nscq286df4hxrv7gr4mj8giymm3icsd1d"; depends=[lattice]; }; + sox = derive2 { name="sox"; version="1.1"; sha256="03lnl431k0fr19akhdwzci2dgmcclkqqj30984wp05ldn87drcyy"; depends=[glmnet Rcpp survival]; }; + sp = derive2 { name="sp"; version="2.1-2"; sha256="1i8d7sbccnhiw7pkmg89v98abjad45psyxccz1acbq4z5ykb9nxz"; depends=[lattice]; }; sp23design = derive2 { name="sp23design"; version="0.9-1"; sha256="1ivsds210rpxj52labc9mf2ncm3vji983w0kj757jl1b308ql30s"; depends=[mvtnorm survival]; }; spAbundance = derive2 { name="spAbundance"; version="0.1.0"; sha256="1sklcbbk82ikgcvbkzr6cy8cw1hbq22acnlqz4avp277pmp514gc"; depends=[abind coda doParallel foreach lme4 RANN]; }; spAddins = derive2 { name="spAddins"; version="0.2.0"; sha256="19wbcghcf0f9qvqy92jhsdcpmd9b4lkhxndvr71cyhzga539lh1n"; depends=[magrittr purrr rstudioapi stringr]; }; spBFA = derive2 { name="spBFA"; version="1.3"; sha256="1bi3lhbx37zlj2x0nql51x5422zxc1gcbn8vqjf81badwf80fwsp"; depends=[msm mvtnorm pgdraw Rcpp RcppArmadillo]; }; - spBayes = derive2 { name="spBayes"; version="0.4-6"; sha256="0530fhb832nr1vzhwml696cbvwpphjha35i20q0aixxqg8fd35jw"; depends=[coda Formula magic Matrix sp]; }; + spBayes = derive2 { name="spBayes"; version="0.4-7"; sha256="18rb4k7yfnz07ilrgdipbl30a78zzl3yaikd999l482v1a95hibr"; depends=[coda Formula magic Matrix sp]; }; spBayesSurv = derive2 { name="spBayesSurv"; version="1.1.7"; sha256="02fjc49yx15jqsflf6vxqwskj5gzfhpfzb8m81nxmc9vq8l475y8"; depends=[coda fields MASS Rcpp RcppArmadillo survival]; }; spCP = derive2 { name="spCP"; version="1.3"; sha256="0rphd8zawr2r14dzwv77plk5xw020pkc26ir72qiqc1acin42xd1"; depends=[msm mvtnorm Rcpp RcppArmadillo]; }; spData = derive2 { name="spData"; version="2.3.0"; sha256="12w4chk71vqy1chij79928ppxdg2cz03hx9bgs5cgwj9f1ciyb2b"; depends=[sp]; }; @@ -17828,33 +18101,32 @@ in with self; { spMaps = derive2 { name="spMaps"; version="0.5.0"; sha256="1v5gvnyfj04rxraqngrmpkpq3874y422hr6yirj52iksb8ry0kgh"; depends=[sf sp]; }; spNNGP = derive2 { name="spNNGP"; version="1.0.0"; sha256="0z09hxmm2pbxsbm3zqk839z2gb3g2n2hqkahcbvcgywrqn3v8cal"; depends=[coda Formula RANN]; }; spNetwork = derive2 { name="spNetwork"; version="0.4.3.8"; sha256="0jxm3csq6prqssw9jdlk0k1ipm19kfv1y8kjgyqfb5m5l1za5xvq"; depends=[abind BH cubature data_table dbscan dplyr future_apply ggplot2 igraph progressr Rcpp RcppArmadillo RcppProgress Rdpack sf spdep]; }; - spOccupancy = derive2 { name="spOccupancy"; version="0.7.1"; sha256="1xlb9j81va9sz9paskf26q60s36cb0vv22c1rwwvp94xf04v2j85"; depends=[abind coda doParallel foreach lme4 RANN]; }; + spOccupancy = derive2 { name="spOccupancy"; version="0.7.2"; sha256="13zqdiwk692y1spqwi3wj9rmvy6v3165f162l1y37hg24m0000j0"; depends=[abind coda doParallel foreach lme4 RANN]; }; spRingsteen = derive2 { name="spRingsteen"; version="0.1.0"; sha256="13mdbsbq51sp34xp04lgc4klwb3chnnkvh5r99qfapbbr0vra8vl"; depends=[devtools rlang]; }; spTDyn = derive2 { name="spTDyn"; version="2.0.2"; sha256="010x3rjncasly1scngwyiys7asmk4ay51bzhk0zfjazwfkmqd12r"; depends=[coda sp spacetime spTimer]; }; spThin = derive2 { name="spThin"; version="0.2.0"; sha256="0j10j1cbbwp3baqm3b59rxlnd643mkx1mirlxpnr1ad2g7xpm69f"; depends=[fields knitr spam]; }; spTimer = derive2 { name="spTimer"; version="3.3.2"; sha256="0dlsyj0mawpgxr1yn4ldqm3xh148c79lk55fq475zjzyiwz9ynfc"; depends=[coda extraDistr sp spacetime]; }; - spaMM = derive2 { name="spaMM"; version="4.4.0"; sha256="0c97fs457jcdqf4pncwg4k4nh91kh1s2l94jhwzvfq7s5mk9jwpz"; depends=[backports boot crayon geometry gmp MASS Matrix minqa nlme nloptr numDeriv pbapply proxy Rcpp RcppEigen ROI]; }; + spaMM = derive2 { name="spaMM"; version="4.4.16"; sha256="11drqd7fxby8s6dk13v94aqbhi2sj40qcjsmr7r7g0c95m8fsxj4"; depends=[backports boot crayon geometry gmp MASS Matrix minqa nlme nloptr numDeriv pbapply proxy Rcpp RcppEigen ROI]; }; spaa = derive2 { name="spaa"; version="0.2.2"; sha256="163iipz1knxx1lzby9a3n1f014yqkf25z1wpwwy4gbx7sia499d5"; depends=[]; }; spaceNet = derive2 { name="spaceNet"; version="1.2"; sha256="1s2672icxs0qvdhl52xhllgvh1i9mjfrn5j3icyw6h61ljbnhy11"; depends=[MASS mclust permute RcppTN Rfast sna vegan]; }; spacefillr = derive2 { name="spacefillr"; version="0.3.2"; sha256="0raaw9ib8b2dzkh4w28wpxcgxs7ky328yaayb64lc39syf7g19dv"; depends=[Rcpp]; }; spacejamr = derive2 { name="spacejamr"; version="0.2.1"; sha256="05rprsgnihhz3xhh7p9mkn4scpi318kvrkkrrw9j645d6bwfms5l"; depends=[crsuggest dplyr ggplot2 ggraph ggthemes igraph magrittr sf spatstat_geom spatstat_random]; }; spacesRGB = derive2 { name="spacesRGB"; version="1.4-0"; sha256="1py93g7wglszcrkm09y0am2iia972q0jbgwb2wmickw3xsgip8p5"; depends=[]; }; spacesXYZ = derive2 { name="spacesXYZ"; version="1.2-1"; sha256="02czblryvr8072q0gbm121cl2x2hir582khxrd2qyv05pv36kz3d"; depends=[]; }; - spacetime = derive2 { name="spacetime"; version="1.3-0"; sha256="06slxywh94g4k7dxnfs9g5yjvwjk2lxwydrjwawg0mgkqsjh569f"; depends=[intervals lattice sp xts zoo]; }; - spacyr = derive2 { name="spacyr"; version="1.2.1"; sha256="1b2ccgwsiqkvp7w37x8k7699c676q16vfrybkrfvyczyhki4s6nw"; depends=[data_table reticulate]; }; + spacetime = derive2 { name="spacetime"; version="1.3-1"; sha256="1kr12pbi6hqns30kqy4jv5pcm3lgfcfyc2gwaak1jbg894csahhr"; depends=[intervals lattice sp xts zoo]; }; + spacyr = derive2 { name="spacyr"; version="1.3.0"; sha256="1z4nx8phrc0l73xic2lkff03a54kjw343425h5mm2afz6zidcmf4"; depends=[data_table reticulate]; }; spaero = derive2 { name="spaero"; version="0.6.0"; sha256="0xigwi6w21y2fwicml0s2gylwnwp2qvrqskr0v8rd3bn01hg9ja3"; depends=[]; }; spam = derive2 { name="spam"; version="2.10-0"; sha256="0ydc513jg7phzdqg8jp7210ayrrmxq91jafqzx8z1v0172i8d73i"; depends=[dotCall64 Rcpp]; }; spam64 = derive2 { name="spam64"; version="2.10-0"; sha256="0kb7jz12xb0i45b70x3p785md01s7wbwl8lgisq4i83jvlz016ln"; depends=[]; }; - spamtree = derive2 { name="spamtree"; version="0.2.2"; sha256="1z1dyv6cvcdilqyfpzgl3zr0jmzjn2sznrvypvxx7c8i6qfq8nd0"; depends=[dplyr FNN magrittr Rcpp RcppArmadillo rlang tibble]; }; spanish = derive2 { name="spanish"; version="0.4.2"; sha256="15drc11lh0qxpww50p0smi8qxfbln82bx0yd74jqf71irhk5jxyp"; depends=[magrittr xml2]; }; - spant = derive2 { name="spant"; version="2.16.0"; sha256="19n2mnvrd9p0kwgnhh7q2pz01xs22qx2zqw1k4l0gvagb8kjz9pi"; depends=[abind expm fields irlba jsonlite minpack_lm mmand nloptr numDeriv plyr pracma ptw RNifti RNiftyReg signal smoother stringr]; }; + spant = derive2 { name="spant"; version="2.17.0"; sha256="0zmk71pqg4j0amqwpyf6l0p3j60fks4snqy9409vvsgxihfj51r4"; depends=[abind expm fields irlba jsonlite minpack_lm mmand nloptr numDeriv plyr pracma ptw RNifti RNiftyReg signal smoother stringr]; }; sparcl = derive2 { name="sparcl"; version="1.0.4"; sha256="138krflvfdlx4hlh90mswds51i8aw2vv00gm5lgkfsvxj4w324jg"; depends=[]; }; spark_sas7bdat = derive2 { name="spark.sas7bdat"; version="1.4"; sha256="1s1hd6hvjxnfb3w10v93pggijmm2h4rcsf7ckl34j2sw9bvv7zka"; depends=[sparklyr]; }; sparkavro = derive2 { name="sparkavro"; version="0.3.0"; sha256="0g6ac9msfbx8f8j8rj0hvlxjsn317zyam207q7i8kf0hshs1r58f"; depends=[DBI dplyr sparklyr]; }; sparkbq = derive2 { name="sparkbq"; version="0.1.1"; sha256="0gccm8q5a45k9zm8f90r7fhcmriq8d038p022k7cikbr6rqsrmyh"; depends=[sparklyr]; }; sparkhail = derive2 { name="sparkhail"; version="0.1.1"; sha256="1a9p9i7fs6l9rx5ha6akjjl7qhfak01xsjg28ysv0imikmwp6hy7"; depends=[dplyr sparklyr sparklyr_nested]; }; sparkline = derive2 { name="sparkline"; version="2.0"; sha256="0lrr1lm7603di7x3mf53cp13d9ssjh9gmb43wa6z9yqapis2djm2"; depends=[htmltools htmlwidgets]; }; - sparklyr = derive2 { name="sparklyr"; version="1.8.3"; sha256="1bzvkzb38l3c9r0agkygkjjv7x94f9m6f3p2cf9i305jd8s9qjg9"; depends=[base64enc config DBI dbplyr digest dplyr ellipsis generics globals glue httr jsonlite openssl purrr rappdirs rlang rstudioapi tibble tidyr tidyselect uuid vctrs withr xml2]; }; + sparklyr = derive2 { name="sparklyr"; version="1.8.4"; sha256="0xc38xq8izpg0fh4kjb5f223jvhrczs66aydw32kyk6mx07c43ch"; depends=[config DBI dbplyr dplyr generics globals glue httr jsonlite openssl purrr rappdirs rlang rstudioapi tibble tidyr tidyselect uuid vctrs withr xml2]; }; sparklyr_flint = derive2 { name="sparklyr.flint"; version="0.2.2"; sha256="0sszblvgxi8l8wlic5nrnm4pc9m0byyvayrja2476vnz0pqliv69"; depends=[dbplyr dplyr rlang sparklyr]; }; sparklyr_nested = derive2 { name="sparklyr.nested"; version="0.0.4"; sha256="185cq40958fgwrng14ifil1vwrni5nn6haxfknzarhn805hfkv7c"; depends=[dplyr jsonlite listviewer purrr rlang sparklyr tidyselect]; }; sparktex = derive2 { name="sparktex"; version="0.1"; sha256="0r6jnn9fj166pdhnjbsaqmfmnkq0qr1cjprihlnln9jad05mrkjx"; depends=[]; }; @@ -17875,7 +18147,7 @@ in with self; { sparseLTSEigen = derive2 { name="sparseLTSEigen"; version="0.2.0.1"; sha256="08xhpm9hp9x9rmiys4fvh9y4z2xsdkzckzw3lq0vlzvjcaynvidq"; depends=[Rcpp RcppEigen robustHD]; }; sparseMVN = derive2 { name="sparseMVN"; version="0.2.2"; sha256="1vd97w4mrc6s9d95a43cpz90adhn2015as93j55hm5phpgj24v75"; depends=[Matrix]; }; sparseMatEst = derive2 { name="sparseMatEst"; version="1.0.0"; sha256="06y061zl6id7cfw3cqzvwykzlijmala8hj61i04mgc491ngybimv"; depends=[glasso]; }; - sparseR = derive2 { name="sparseR"; version="0.2.2"; sha256="0sly1bga1n5nvhbbfwbzy4giyvlhg4mivqibj4nzc46pk8xlyhc3"; depends=[dplyr magrittr ncvreg recipes rlang]; }; + sparseR = derive2 { name="sparseR"; version="0.2.3"; sha256="1q77n45kl1hqx5a6cr4hschj8zv0ymw8v7yvm748sdplan2dj417"; depends=[dplyr magrittr ncvreg recipes rlang]; }; sparseSEM = derive2 { name="sparseSEM"; version="4.0"; sha256="15pgh5x01inyl8kxaqsz9hf7iv3splzarch89yz1nappv86c7khq"; depends=[]; }; sparseSVM = derive2 { name="sparseSVM"; version="1.1-6"; sha256="0b0qiikjyyh9qfd4jl69zqnlp7adxq63mwsxvgwvyc0pv5ccg8i0"; depends=[]; }; sparsebnUtils = derive2 { name="sparsebnUtils"; version="0.0.8"; sha256="1x1phd33r3ci72sbm0pkmigwbi4x59pdz8n5919119mkxdf740vs"; depends=[Matrix nnet]; }; @@ -17894,34 +18166,35 @@ in with self; { sparta = derive2 { name="sparta"; version="0.8.4"; sha256="109i8yhv8snhpccrhxy1k8xcy9jj8m3li2d7vaylvxbrlnc26d89"; depends=[Rcpp RcppArmadillo]; }; sparvaride = derive2 { name="sparvaride"; version="0.1.0"; sha256="17skm44cdv540jik8lv5y0dp6yzjgy775vjzq3dv1jv58nqjvps1"; depends=[Rcpp RcppArmadillo]; }; spass = derive2 { name="spass"; version="1.3"; sha256="1c148z0i3d185hnf54xmgppjrblv3b2s3sm0lmj78gvav04mj5s4"; depends=[geepack MASS multcomp mvtnorm Rcpp]; }; - spatPomp = derive2 { name="spatPomp"; version="0.33.0"; sha256="1lwrj40mnb6gcpqjh3w6d9lp5n0y8q3pidgypznhgr5akzyn4lcg"; depends=[abind dplyr foreach ggplot2 magrittr pomp rlang stringr tidyr]; }; + spatPomp = derive2 { name="spatPomp"; version="0.34.0"; sha256="13nrn8c6p31n2hpjrka9f0s3ihw8v4q3agp7bw1vqjc2chi56ap9"; depends=[abind dplyr foreach ggplot2 magrittr pomp rlang stringr tidyr]; }; spate = derive2 { name="spate"; version="1.7.5"; sha256="114amd3rh9ns6pyh92c5n991904mfwd6vi5cljzm2w3rhyf9vjci"; depends=[mvtnorm truncnorm]; }; spatgeom = derive2 { name="spatgeom"; version="0.3.0"; sha256="1z6haqqzghji6703crs69nvqx93h19bdkw0frpmrcxa60fxm0kyr"; depends=[cowplot dplyr ggplot2 lwgeom purrr scales sf]; }; spatgraphs = derive2 { name="spatgraphs"; version="3.4"; sha256="1xiq4a8br46qk19k23kkb6l1b7ciw9lmmrvwfznwkamwps6dwlg8"; depends=[Matrix Rcpp]; }; spathial = derive2 { name="spathial"; version="0.1.2"; sha256="1vwzcwpmx8kwv821vjf940qd5am3k0shf1s14jva71mgxs70ddmb"; depends=[class igraph irlba knitr MASS matrixStats pracma rmarkdown Rtsne]; }; spatial = derive2 { name="spatial"; version="7.3-17"; sha256="1msxbxz50qmzjxgix2vcq0f50b4cdvj8nz3qlilp397jrzc3w07i"; depends=[]; }; spatialCovariance = derive2 { name="spatialCovariance"; version="0.6-9"; sha256="1m86s9a059spp97y37dcirrgjshcqzpdj11cq92vji624w4nrhlb"; depends=[]; }; + spatialEco = derive2 { name="spatialEco"; version="2.0-2"; sha256="0z5m78x72if7bbhfjb92xv2qg4i7vh5hq9w5djd615piin9qwfsk"; depends=[sf terra]; }; spatialRF = derive2 { name="spatialRF"; version="1.1.4"; sha256="1lbwk7ziv292kxkz6rpr44jij3q13ljmqaccq56x6c2l8wkxl583"; depends=[doParallel dplyr foreach ggplot2 huxtable magrittr patchwork ranger rlang tibble tidyr tidyselect viridis]; }; - spatialTIME = derive2 { name="spatialTIME"; version="1.3.3-3"; sha256="06fwjifvgjb9xcxlgd32s8ik9dcjakc5z25lmhvp63lkyyazvqxs"; depends=[crayon dplyr furrr future ggplot2 magrittr plyr purrr RColorBrewer rlang scales spatstat_explore spatstat_geom tidyr tidyselect]; }; - spatialprobit = derive2 { name="spatialprobit"; version="1.0.1"; sha256="1r8pn6pmd2aqy7xia2b0935n69zkr4h0dwp6z418jxgbfc7198yl"; depends=[Matrix mvtnorm spatialreg spdep tmvtnorm]; }; - spatialreg = derive2 { name="spatialreg"; version="1.2-9"; sha256="0gmrrddhhs5fcgfgm8w3rkjk6g6vdndlj92jb8naihbwxkzgkya5"; depends=[boot coda expm LearnBayes MASS Matrix multcomp nlme sf spData spdep]; }; + spatialTIME = derive2 { name="spatialTIME"; version="1.3.4-2"; sha256="1wvxnrglvrzmf471g0dwdr5m69vq8c38sp9hnrvjmrw74y4sdpp4"; depends=[crayon dixon dplyr furrr future ggplot2 magrittr pbmcapply purrr RColorBrewer scales spatstat_explore spatstat_geom stringr tibble tidyr tidyselect]; }; + spatialising = derive2 { name="spatialising"; version="0.6.0"; sha256="0q2gj16crhr1s92pazj6zbhr03xjp0pqwdc64qanpxmv4sbm65wq"; depends=[comat Rcpp terra]; }; + spatialreg = derive2 { name="spatialreg"; version="1.3-1"; sha256="0j8gw66xgqgq9sni4sjq0m5vyvk8q45wby7ry7aja56bc07x7bjj"; depends=[boot coda LearnBayes MASS Matrix multcomp nlme sf spData spdep]; }; spatialrisk = derive2 { name="spatialrisk"; version="0.7.0"; sha256="0mqi8jrz1msk2aaza67vfp9s21f372mhvbivwxy56fxrl7vp975v"; depends=[classInt colourvalues data_table dplyr fs GenSA geohashTools ggplot2 leafem leafgl leaflet lubridate Rcpp RcppProgress sf tmap units viridis]; }; - spatialsample = derive2 { name="spatialsample"; version="0.4.0"; sha256="1f44zzga5df5vqxzvc40sbivdhzx4x62qbqx5vkw9rxw5yrm9d2d"; depends=[cpp11 dplyr ggplot2 glue purrr rlang rsample sf tibble tidyselect units vctrs]; }; + spatialsample = derive2 { name="spatialsample"; version="0.5.1"; sha256="0pcwf15ani4r8j3zgqz093jkimazzwi0218qx18xglymk180hhcp"; depends=[cpp11 dplyr ggplot2 glue purrr rlang rsample sf tibble tidyselect units vctrs]; }; spatialwarnings = derive2 { name="spatialwarnings"; version="3.0.3"; sha256="03a0gb8v6028v6q5w3iap8fn9nkb2rpnabqgzmr2dyxnpfgr9dn3"; depends=[future future_apply ggplot2 gsl plyr Rcpp RcppArmadillo segmented]; }; spatialwidget = derive2 { name="spatialwidget"; version="0.2.3"; sha256="0j0v0cyqndlg9p7g03gp1br9b2i3p50abzpw67k3cawm96a87crj"; depends=[BH colourvalues geojsonsf geometries jsonify rapidjsonr Rcpp sfheaders]; }; spatsoc = derive2 { name="spatsoc"; version="0.2.2"; sha256="0aj9kg9013m0j3nx5qr2mvwczskkk0wy19yx1pb33wnqvhv2w0n0"; depends=[adehabitatHR data_table igraph sf units]; }; - spatstat = derive2 { name="spatstat"; version="3.0-6"; sha256="0vlpa5a1b5s27lgxkq65iixrsbbj0x4zahg0sfsak0ackj8ks577"; depends=[spatstat_data spatstat_explore spatstat_geom spatstat_linnet spatstat_model spatstat_random spatstat_utils]; }; + spatstat = derive2 { name="spatstat"; version="3.0-7"; sha256="1h6fnri3ma5kgzkwv4lr2i2jvsx8sg4am3rgzb29h7l89x59yxrk"; depends=[spatstat_data spatstat_explore spatstat_geom spatstat_linnet spatstat_model spatstat_random spatstat_utils]; }; spatstat_Knet = derive2 { name="spatstat.Knet"; version="3.0-2"; sha256="1yvdasrxmsa2m9016kclb33kv5893fsz5rcr416yhpf6jixdsfh8"; depends=[Matrix spatstat spatstat_data spatstat_explore spatstat_geom spatstat_linnet spatstat_model spatstat_random spatstat_sparse spatstat_utils]; }; - spatstat_data = derive2 { name="spatstat.data"; version="3.0-1"; sha256="002kvli3n9cppaar7q062dm4fapdgkyf1daq5zscxsanwcflpswf"; depends=[Matrix spatstat_utils]; }; + spatstat_data = derive2 { name="spatstat.data"; version="3.0-3"; sha256="0fxd266rza07s73fj1n4rd4i7x1bv1ll36iikxzjhnlh3vjc0hkn"; depends=[Matrix spatstat_utils]; }; spatstat_explore = derive2 { name="spatstat.explore"; version="3.2-5"; sha256="053wl87whmkkqp058lwzlwv0wydddizsni9m94f6kxgl5ahia1sc"; depends=[abind goftest Matrix nlme spatstat_data spatstat_geom spatstat_random spatstat_sparse spatstat_utils]; }; spatstat_geom = derive2 { name="spatstat.geom"; version="3.2-7"; sha256="13k85918zd2n64mxjwlgzd986zvs3is8vg06k9i195yymfrik65y"; depends=[deldir polyclip spatstat_data spatstat_utils]; }; spatstat_gui = derive2 { name="spatstat.gui"; version="3.0-1"; sha256="1y6z3gdad0nhqg494b5pjq4h0mr3mcrhnnc0chy56lf8chb6p5jb"; depends=[rpanel spatstat spatstat_data spatstat_explore spatstat_geom spatstat_linnet spatstat_model spatstat_random spatstat_utils]; }; - spatstat_linnet = derive2 { name="spatstat.linnet"; version="3.1-1"; sha256="0adha3bi1a250p8wm7agqdmwzznd6blsfg0km11n25ad8y2r5q0c"; depends=[Matrix spatstat_data spatstat_explore spatstat_geom spatstat_model spatstat_random spatstat_sparse spatstat_utils]; }; + spatstat_linnet = derive2 { name="spatstat.linnet"; version="3.1-3"; sha256="1ybjl5ccp9r5ilbihwzk93zcm46pbpldn3nfbfpdw458xh894r3q"; depends=[Matrix spatstat_data spatstat_explore spatstat_geom spatstat_model spatstat_random spatstat_sparse spatstat_utils]; }; spatstat_local = derive2 { name="spatstat.local"; version="5.0-1"; sha256="02ip6d2mr07n3lv4i5xdmb1j55syk5hwjwr7j81ibxkp3gj8gm61"; depends=[spatstat spatstat_data spatstat_explore spatstat_geom spatstat_model spatstat_random spatstat_sparse spatstat_utils tensor]; }; spatstat_model = derive2 { name="spatstat.model"; version="3.2-8"; sha256="1x03fy921rq8dyr6jkpwnx7pf7fc5593mvnl8r1gz3sypnmp6p4d"; depends=[abind goftest Matrix mgcv nlme rpart spatstat_data spatstat_explore spatstat_geom spatstat_random spatstat_sparse spatstat_utils tensor]; }; - spatstat_random = derive2 { name="spatstat.random"; version="3.2-1"; sha256="1p1imyqrpvdhsc24pq3mvdg9n29h6q8zlawdyahqiymynyp22m4j"; depends=[spatstat_data spatstat_geom spatstat_utils]; }; - spatstat_sparse = derive2 { name="spatstat.sparse"; version="3.0-2"; sha256="1gnlgz11dv66b41kdyyzm8nhkhhi4yajlcr2g52h2lfxlryb5g2h"; depends=[abind Matrix spatstat_utils tensor]; }; - spatstat_utils = derive2 { name="spatstat.utils"; version="3.0-3"; sha256="0j6w9b479qqah2vzbq31v1xa6rjql8a85hdlahqhwqd9j1scd03s"; depends=[]; }; + spatstat_random = derive2 { name="spatstat.random"; version="3.2-2"; sha256="01rsh7z9prsdrqlbc2761sf54w24z7jzj64ijfzy8l5ca56fxij8"; depends=[spatstat_data spatstat_geom spatstat_utils]; }; + spatstat_sparse = derive2 { name="spatstat.sparse"; version="3.0-3"; sha256="0scdk3ns4nl1v1avbggnsinfpvl4i8391qy3x1iwxvkimr14xg3b"; depends=[abind Matrix spatstat_utils tensor]; }; + spatstat_utils = derive2 { name="spatstat.utils"; version="3.0-4"; sha256="1i1w1ys29s22jfjvliqnbw3zi6zar8bxxz3r8za182p2w0wqwhax"; depends=[]; }; spatsurv = derive2 { name="spatsurv"; version="2.0-1"; sha256="17s88w8ikrazhjbilvwcw1i1r9b77ci7f69jgr8lni7dd7l0b0hy"; depends=[fields iterators lubridate Matrix raster RColorBrewer sf sp spatstat_explore spatstat_geom spatstat_random stringr survival]; }; spbabel = derive2 { name="spbabel"; version="0.6.0"; sha256="0y30v7p54mmy43w7wclhywwk1zih6h66hkgd7dc101yiqvnx4m84"; depends=[dplyr pkgconfig rlang sp tibble]; }; spc = derive2 { name="spc"; version="0.6.7"; sha256="02dw1hh3ksx119wf7qkg01m7h60pmsc3vkryw5fikyxyfz871ldl"; depends=[]; }; @@ -17931,7 +18204,7 @@ in with self; { spcov = derive2 { name="spcov"; version="1.3"; sha256="037pl4kh87b85v7q1nrxcm7vw5f3pr7m2b76424ic9sxa56wfdnp"; depends=[]; }; spcr = derive2 { name="spcr"; version="2.1.1"; sha256="09clpz0vqssagmfjcrs2qp5i61ppjr9nxn342l6gbdnbw91wc7f3"; depends=[]; }; spd = derive2 { name="spd"; version="2.0-1"; sha256="00zxh4ri47b61jkcjf5idl9hhlfld6rhczsnhmjsax59884f2i8m"; depends=[KernSmooth]; }; - spdep = derive2 { name="spdep"; version="1.2-8"; sha256="144idklvyvnzfdnigzyw6wqhxyrfjw8pm7vdmlk5a0yi235v97wd"; depends=[boot deldir e1071 s2 sf sp spData units]; }; + spdep = derive2 { name="spdep"; version="1.3-1"; sha256="15jkx3f4c1255kidsqdq4gyi28r4jk3h46fm7jj114ag176jq1in"; depends=[boot deldir e1071 s2 sf sp spData units]; }; spdesign = derive2 { name="spdesign"; version="0.0.2"; sha256="0nhz7b6xgc6ns0h2fr39vb6bb3l0x6q8km7d0q5x8n71qdk4lf7h"; depends=[cli future matrixStats randtoolbox stringr]; }; spdl = derive2 { name="spdl"; version="0.0.5"; sha256="185qzlwac7acq126xpvcd71nv25zgkrdr8m73gv2sn1zxj78hyid"; depends=[RcppSpdlog]; }; spdownscale = derive2 { name="spdownscale"; version="0.1.0"; sha256="0pl560km9629iwy13h7359ab7ixzs09hg986kvk0xbnc348srb86"; depends=[]; }; @@ -17945,7 +18218,6 @@ in with self; { specieschrom = derive2 { name="specieschrom"; version="1.0.0"; sha256="0h2hgh0amvv7in5hplh6x3k95bnjm6d24nzmc57yihcsqjndli9k"; depends=[colorRamps ggplot2 reshape2]; }; specklestar = derive2 { name="specklestar"; version="0.0.1.7"; sha256="04vm989yi31vqnf5rs6cdyikm4jzfd9njxh0ls3dvjrg19ipsnmn"; depends=[Rcpp]; }; specr = derive2 { name="specr"; version="1.0.0"; sha256="1y7d1x9rps0xkm8jghpnva8mmzwqa0c93mk6rf2dyrbyw850ddax"; depends=[broom cowplot dplyr furrr future ggplot2 ggraph glue igraph lifecycle lme4 magrittr parallelly purrr rlang stringr tibble tidyr]; }; - specs = derive2 { name="specs"; version="0.1.1"; sha256="0x5s7aikj5x1dgxygizh2mcni74hy6dm7084h1pqqbh5ans00c6n"; depends=[Rcpp RcppArmadillo]; }; spectacles = derive2 { name="spectacles"; version="0.5-4"; sha256="10qc46kspnmc85w3a29jx1fj0jxpzxa9b5ygpszhjkz3w8q6s8i4"; depends=[baseline epiR ggplot2 plyr reshape2 signal stringr]; }; spectator = derive2 { name="spectator"; version="0.2.0"; sha256="07wawsmfh529973j3iwn7fbk547a38mqlmbrva2n4nvgm1k5qy9l"; depends=[geojsonsf httr sf]; }; spectr = derive2 { name="spectr"; version="1.0.1"; sha256="1jbadg9n42qrbw1v6hqrdp5pzy2nn1kvqi4xscxdxvc6c33i7zr4"; depends=[data_table foreach lomb]; }; @@ -17975,10 +18247,11 @@ in with self; { spflow = derive2 { name="spflow"; version="0.1.0"; sha256="0a5nirccwcc2z4dn3gxdlhdjz7sxv1r23clawy0kwn4ggdkmphp1"; depends=[coda Matrix Rdpack RSpectra]; }; spgs = derive2 { name="spgs"; version="1.0-4"; sha256="0ln0fhxiavzwp5qlz5akk5896dyznwbz23f816vkjnxmw7pi4p70"; depends=[]; }; spgwr = derive2 { name="spgwr"; version="0.6-36"; sha256="1fkz37zwmarcsl101z172kiar48zyi6s216lhc8zc39g4kqpj99a"; depends=[sp spData]; }; + sphereTessellation = derive2 { name="sphereTessellation"; version="1.2.0"; sha256="1b8wxbh44qd0rznjln3icp9k4jy598rva9kwcgzscpjm5j86r97w"; depends=[BH colorsGen Polychrome Rcpp RcppCGAL RcppEigen rgl]; }; spherepc = derive2 { name="spherepc"; version="0.1.7"; sha256="0y05ylyxzawgjlivaxs513mfjjfmw6fm98b83sq76n8yw56pr9ny"; depends=[geosphere rgl sphereplot]; }; sphereplot = derive2 { name="sphereplot"; version="1.5.1"; sha256="1jxjd66hcyqdizzikxsncswswj7c1rprigz1xii82rkcms8iygzm"; depends=[rgl]; }; sphet = derive2 { name="sphet"; version="2.0"; sha256="1qr4n4kbmc58qmr8niqq3mnwv18x9q2f24c1kg67asf7n3pnmy77"; depends=[coda Matrix mvtnorm nlme sf sp spatialreg spData spdep stringr]; }; - sphunif = derive2 { name="sphunif"; version="1.1.0"; sha256="0g2f9r69mkggljbrkfmfxqv9vpqgi2d8zzsm9zvfcf72b06asb9n"; depends=[doFuture foreach future gsl Rcpp RcppArmadillo rotasym]; }; + sphunif = derive2 { name="sphunif"; version="1.3.0"; sha256="1m4id7h3jd0r8p9j5ip4d5r79lk27j7xk4iwizjapd74i0vm84az"; depends=[doFuture doRNG foreach future gsl Rcpp RcppArmadillo rotasym]; }; spidR = derive2 { name="spidR"; version="1.0.2"; sha256="09n0fz9iqc3n4c72h9hyc0ybzaqzy4l1rypvaig5kl98kx5nng1i"; depends=[httr jsonlite rgbif rworldmap rworldxtra]; }; spider = derive2 { name="spider"; version="1.5.0"; sha256="1y034v42jxjl3vj87iz5kaizq7fwppmn56z7yyvrrmk5ps4nqr1j"; depends=[ape pegas]; }; spiderbar = derive2 { name="spiderbar"; version="0.2.5"; sha256="0yhxm3ns9xymm6msklpm1x0ahcq7gkfp1w92aafk2r3pip1g3ds5"; depends=[Rcpp]; }; @@ -18005,15 +18278,15 @@ in with self; { splithalf = derive2 { name="splithalf"; version="0.8.2"; sha256="0lq1a07kh2jdvg68p2jzhjcidwp6r83qbkggqdv0rmdj4x47lj5s"; depends=[dplyr ggplot2 lme4 patchwork plyr psych Rcpp robustbase tidyr]; }; splithalfr = derive2 { name="splithalfr"; version="2.2.2"; sha256="0zy7p2cvxbq2p24vyi55hl4qcj42igfbsapmx3xh15rpcdhzsmm0"; depends=[bcaboot dplyr psych rlang tibble]; }; splitstackshape = derive2 { name="splitstackshape"; version="1.4.8"; sha256="0mpyf2kkfdl69pdc6brl1r6101vyc6pgr7z17s55ppg3y71k4q35"; depends=[data_table]; }; - splm = derive2 { name="splm"; version="1.6-3"; sha256="0qi6kcsp8d6ijdca2rgdy0rr4myiii6qv4mlva4hc5r24w8v3ycm"; depends=[bdsmatrix ibdreg MASS Matrix maxLik nlme plm spam spatialreg spdep stringr]; }; + splm = derive2 { name="splm"; version="1.6-5"; sha256="0zwyl8pyx5ldr1rwqlkmzzbjc7r4dp261lsvw4b37ydm0sdhsizk"; depends=[bdsmatrix MASS Matrix maxLik nlme plm spam spatialreg spdep stringr]; }; splmm = derive2 { name="splmm"; version="1.1.3"; sha256="0z04arwzy5169f6bhc8cbdc07zcmd5safpii5a3g7bqallmzipnr"; depends=[emulator ggplot2 gridExtra MASS miscTools penalized plot3D Rcpp RcppArmadillo]; }; - splot = derive2 { name="splot"; version="0.5.3"; sha256="15z12qjfrxh1r1xcrn7r53cpahzbk5gh3gnvndsmwks5lk97gfxg"; depends=[]; }; + splot = derive2 { name="splot"; version="0.5.4"; sha256="14x2fsf41izlb99pxypgy3f4yaj33j04a68nan0f9545fjl78v4x"; depends=[]; }; spls = derive2 { name="spls"; version="2.2-3"; sha256="0bmb0ai5z80njhypd342i711x0bdkwcvlyn374lyyzj8h3d97mmv"; depends=[MASS nnet pls]; }; - splus2R = derive2 { name="splus2R"; version="1.3-3"; sha256="035zd22zcpkh74rik9ws6g8al6vjz7jgrqs5si361bzb5n290p3x"; depends=[]; }; + splus2R = derive2 { name="splus2R"; version="1.3-4"; sha256="16r13bbijq7lz3c8qn7dnb4h8fc3vbcahyah2zij888p470vqljn"; depends=[]; }; splutil = derive2 { name="splutil"; version="2022.6.20"; sha256="02hic08ckjg7iyjcyjncrkvjnpbpxk0v8g1yxy2s1vaw0mmfj4cz"; depends=[data_table ggplot2 magrittr]; }; spm = derive2 { name="spm"; version="1.2.2"; sha256="0slpy3cmv5l2gbgvy3yfdhzm73427bl39shadpmf3jkkbflcczsn"; depends=[biomod2 gbm gstat psy randomForest ranger sp]; }; spm2 = derive2 { name="spm2"; version="1.1.3"; sha256="1fac131zg5z7jxbkjy6745b4pggpmkjyl9iyq15yr7yzfs77yz62"; depends=[e1071 fields gbm glmnet gstat nlme randomForest sp spm]; }; - spmodel = derive2 { name="spmodel"; version="0.4.0"; sha256="0viv56fk4qq16grzhjx9fviyykwh2rki5q1fs92fnjpghnhjfwv7"; depends=[generics Matrix sf tibble]; }; + spmodel = derive2 { name="spmodel"; version="0.5.1"; sha256="1mzayk0ncd7kwjc3bdv3kl9zisd93giawl060d1fj923pz0rzcpx"; depends=[generics Matrix sf tibble]; }; spmoran = derive2 { name="spmoran"; version="0.2.2.9"; sha256="1xbvr9wrp48a31ggr2j8kivkpjxl1n8cmhfmlz13dcd15byvjrcs"; depends=[doParallel fields FNN foreach ggplot2 Matrix rARPACK RColorBrewer sf spdep vegan]; }; spnaf = derive2 { name="spnaf"; version="0.2.1"; sha256="1v19rhcy8na5iz0mqkadgmqyzq9maqnzb4s7l6blq6zz3krgaj0s"; depends=[dplyr magrittr rlang sf spdep tidyr]; }; spnn = derive2 { name="spnn"; version="1.2.1"; sha256="1yj89j7nynfyw1ikm6q5kdwdgiiwxx0aa6kgnri5wfnb4l0356l7"; depends=[MASS Rcpp RcppArmadillo]; }; @@ -18023,7 +18296,7 @@ in with self; { spongecake = derive2 { name="spongecake"; version="0.1.2"; sha256="13fxizbfjvqkhkmxk5bwv2fj2xyjkbxrxicpdgwpg0wsk4dhj3s8"; depends=[ggplot2 jpeg magrittr plyr]; }; spooky = derive2 { name="spooky"; version="1.4.0"; sha256="18qlm1dvspw2n7xanrxvflgvdppva3pxrs6m56cia2klv95rn1xn"; depends=[entropy fANCOVA fastDummies ggplot2 greybox imputeTS lubridate modeest moments philentropy purrr readr scales tictoc]; }; spork = derive2 { name="spork"; version="0.2.3"; sha256="1dvww617kcy8x483nclkvbkbafrv7a2c3n0yfd88bc5vhvwcgz81"; depends=[ggplot2 latexpdf png]; }; - sport = derive2 { name="sport"; version="0.2.0"; sha256="1wb28iaa35naf5aczijb5g0l41yf098f7c20mjmkcd5w04l1mmks"; depends=[data_table ggplot2 Rcpp]; }; + sport = derive2 { name="sport"; version="0.2.1"; sha256="1vifh5x3rqnj0y7lzxhxa8jiiq9gza7r55kajcdib0hr65amwssk"; depends=[data_table ggplot2 Rcpp]; }; sportyR = derive2 { name="sportyR"; version="2.2.1"; sha256="1az2w2imm54xr6076fip7b881ydyvbj24if2w992ca3d39qggn6i"; depends=[ggfittext ggplot2 glue rlang]; }; spotidy = derive2 { name="spotidy"; version="0.1.0"; sha256="0hg8d3piiwp4q3257qsv5l41zc3c5a8mbq595ci63id8fc2q2pkd"; depends=[dplyr httr magrittr purrr]; }; spotifyr = derive2 { name="spotifyr"; version="2.2.4"; sha256="14rq4yzvly3yl1xnndpzp6mp2mmbvc0qwkx75lb85gad8271a4ij"; depends=[assertthat dplyr httr janitor jsonlite lubridate magrittr purrr readr rlang rvest stringr tibble xml2]; }; @@ -18044,13 +18317,14 @@ in with self; { spsh = derive2 { name="spsh"; version="1.1.0"; sha256="1rmsgp0mrb4153v5f5xby7r3izvgz1a0vi63g5p9q5jd6z0gd2i1"; depends=[DEoptim FME hypergeo lhs pracma Rdpack]; }; spsur = derive2 { name="spsur"; version="1.0.2.5"; sha256="0ar1b48r2hi50rvzkr432lpcc4c9r72hxkz74gip5gf12i7mx2ci"; depends=[Formula ggplot2 gmodels gridExtra MASS Matrix minqa numDeriv Rdpack rlang sparseMVN spatialreg spdep sphet]; }; spsurv = derive2 { name="spsurv"; version="1.0.0"; sha256="11jlbzvzxv3d1d0nwpbii46ddvphglrxv25rw7pvxbybcx2i7k6x"; depends=[BH coda loo MASS Rcpp RcppEigen rstan rstantools StanHeaders survival]; }; - spsurvey = derive2 { name="spsurvey"; version="5.5.0"; sha256="19nfzw6ac394rn0w6zdn977mf4slxq0mpw2qj9r2ma7z0biwssxn"; depends=[boot crossdes deldir lme4 MASS sampling sf survey units]; }; + spsurvey = derive2 { name="spsurvey"; version="5.5.1"; sha256="13h25mhb45s2k73a5709zlxfxylxqls0avan6d8pcp0iyrmpxjak"; depends=[boot crossdes deldir lme4 MASS sampling sf survey units]; }; spt = derive2 { name="spt"; version="2.5.1"; sha256="04j38d2b35p4798znnc49vqrg8r8bygwi07vybfj3nzimlp2mkrn"; depends=[]; }; sptm = derive2 { name="sptm"; version="2019.11-25"; sha256="1hdymzngdppmh56dqh0k88n9hg68pbx9rgmimbz4ihnfx2plvadh"; depends=[kyotil survey survival]; }; sptotal = derive2 { name="sptotal"; version="1.0.1"; sha256="09wkcc1lbc9d0m19ncqcb3xxgl30lyii6r5nqb9rbjqyf2jl2iak"; depends=[ggplot2 viridis]; }; spuRs = derive2 { name="spuRs"; version="2.0.2"; sha256="00c0hnyrcbkbj269czxbfgmgi88y0vxzm79sxclllkzr9rdd1p53"; depends=[lattice MASS]; }; spup = derive2 { name="spup"; version="1.3-2"; sha256="098zga5dm785v5k0s0ql6j17i6zbnka0yhfni4irlki3y1ndw78m"; depends=[gstat magrittr mvtnorm purrr raster sp whisker]; }; sqlHelpers = derive2 { name="sqlHelpers"; version="0.1.2"; sha256="1r46sak65ipfnflmd7w7ac6p62ihx7l9lpi8cjrx3c5xb6gaaxqx"; depends=[data_table DBI odbc stringi toolbox]; }; + sqlcaser = derive2 { name="sqlcaser"; version="0.2.0"; sha256="0bnrgrmirypzcpyyi3ayi9k6b4phh5cjaa4ldizhsk14d8bbhw40"; depends=[]; }; sqldf = derive2 { name="sqldf"; version="0.4-11"; sha256="0q12vsb53p2wchgp8wfz5bk08wfnm0jxjrakclj4jyy6x3a7ksff"; depends=[chron DBI gsubfn proto RSQLite]; }; sqliter = derive2 { name="sqliter"; version="0.1.0"; sha256="17jjljq60szz0m8p2wc5l56659aap7an5gknc848dp89ycjgj3zx"; depends=[DBI functional RSQLite stringr]; }; sqliteutils = derive2 { name="sqliteutils"; version="0.1.0"; sha256="0v7d52m9yvl5iadqnscgrcvniwhk7i7fmzd3gw23a0q4qxjs8iy9"; depends=[DBI dbplyr dplyr magrittr RSQLite]; }; @@ -18066,6 +18340,7 @@ in with self; { sra = derive2 { name="sra"; version="0.1.4"; sha256="1djnkcykslrnxpm1mqyqgik5pnp54m93ddycqx36vy58pcjrvag4"; depends=[]; }; srcr = derive2 { name="srcr"; version="1.1.0"; sha256="1cv4j27w9lssllih0lg172x1p001sk13p9hg39579lx6rpb9l75q"; depends=[DBI dplyr jsonlite]; }; sregsurvey = derive2 { name="sregsurvey"; version="0.1.3"; sha256="1wpqsjhj4vl8gzma4i9y75srzwl8zmkj55lmrhni7xar4d81mnb4"; depends=[caret dplyr gamlss gamlss_dist magrittr TeachingSampling]; }; + srlTS = derive2 { name="srlTS"; version="0.1.1"; sha256="1alqywbp36adgnak1s78mcwfg0gcg90a9412nypylsk6bfa7wgsv"; depends=[dplyr ncvreg RcppRoll rlang yardstick]; }; srlars = derive2 { name="srlars"; version="1.0.1"; sha256="1l98d24r746h0yh1g885slaq292d3xiy355ihkwdrhvvmirs7l0f"; depends=[cellWise glmnet]; }; srm = derive2 { name="srm"; version="0.4-26"; sha256="1cw0a0n1chnri6jmcav04qa52s8jakviwjpq1yx1x5z2ya978r26"; depends=[Rcpp RcppArmadillo]; }; srp = derive2 { name="srp"; version="1.2.0"; sha256="0xdzfvi7z78xmyxwd8fha3lr86jwmgjba1w8hhn4sv3v5gc9vlkh"; depends=[fda mgcv]; }; @@ -18119,15 +18394,16 @@ in with self; { stabreg = derive2 { name="stabreg"; version="0.1.2"; sha256="1jrxyv0d33vd9vdlj1cv1a2qdz8iqgr726f54dgazwsz3cpyy2ia"; depends=[numDeriv]; }; stabs = derive2 { name="stabs"; version="0.6-4"; sha256="1nf1yg14cgxrs4np1yghpzw1nczaslfv3rvf3918wrlzg0vp6l7q"; depends=[]; }; stacking = derive2 { name="stacking"; version="0.1.2"; sha256="0kizp8ivkan5qjqvc19fg5f5n1k32z1nw81m41nrnblp5c9klvg7"; depends=[caret]; }; - stacks = derive2 { name="stacks"; version="1.0.2"; sha256="179jcgvsydkrg37yz01wj4x9fhvakpmmw2yl18m3aj2llf67ily8"; depends=[butcher cli dplyr foreach generics ggplot2 glmnet glue parsnip purrr recipes rlang rsample tibble tidyr tune vctrs workflows yardstick]; }; + stacks = derive2 { name="stacks"; version="1.0.3"; sha256="0vfpskdk77hrzsiml39d2hlgr92i6ig4q9rdb0hhrfs0hdq9w9q4"; depends=[butcher cli dplyr foreach generics ggplot2 glmnet glue parsnip purrr recipes rlang rsample tibble tidyr tune vctrs workflows yardstick]; }; stacomiR = derive2 { name="stacomiR"; version="0.6.0.7"; sha256="1w44rvjikvj6fjansg0l06rrhym6icrv1fr8bpq9hrx3h870nrz8"; depends=[dplyr ggplot2 Hmisc intervals lattice lubridate magrittr mgcv pool RColorBrewer reshape2 rlang RPostgres scales stacomirtools stringr withr xtable]; }; stacomirtools = derive2 { name="stacomirtools"; version="0.6.0.1"; sha256="1hw1k0mjddw46j3aagry2mx43wak03kkx4zzxplgcafwks5bp82y"; depends=[DBI pool RODBC RPostgres xtable]; }; stagePop = derive2 { name="stagePop"; version="1.1-2"; sha256="0yaxdq0p47qkjwjrsj4vb8rif9ip2k0vjnvz1k87h1mcslkfzygs"; depends=[deSolve PBSddesolve]; }; stagedtrees = derive2 { name="stagedtrees"; version="2.2.1"; sha256="1hpli4zbqhswrnpzygg53zfw1rawmbj1cygvc4zprr37x0ijcjvv"; depends=[]; }; staggered = derive2 { name="staggered"; version="1.1"; sha256="0z9358qbgn637j8iz5qwr4nyrlvi9w85l325vxpc61mcwksx5ip8"; depends=[coop dplyr magrittr MASS purrr Rcpp RcppEigen reshape2 tidyr]; }; stampr = derive2 { name="stampr"; version="0.3.0"; sha256="1vp9ks0fwnz7j1lwvjklys4ih0slhylzfm79kzvfbby9l3xq878j"; depends=[dplyr geosphere lwgeom rlang sf spdep]; }; - stan4bart = derive2 { name="stan4bart"; version="0.0-6"; sha256="115mg6mffh0qyxjbd2y2q1j5b002rs23cslvwpgld4mi9ga3ld5s"; depends=[BH dbarts Matrix Rcpp RcppEigen RcppParallel]; }; + stan4bart = derive2 { name="stan4bart"; version="0.0-7"; sha256="08c6s9kg6pzsh411wnv3pg7717r6kyl1sbm3j4vl0b0sssv12z9s"; depends=[BH dbarts Matrix Rcpp RcppEigen RcppParallel]; }; standardize = derive2 { name="standardize"; version="0.2.2"; sha256="008nz9vf08qxwdsn373yzpmsw5lhbm6mpm6dlwyys58wq0bdvh28"; depends=[lme4 MASS stringr]; }; + standardlastprofile = derive2 { name="standardlastprofile"; version="1.0.0"; sha256="0hj4hb2x7j1mfhkr6ccxjl4zkvhy3h0lvs71vzrz4mja3453bs5x"; depends=[]; }; standartox = derive2 { name="standartox"; version="0.0.2"; sha256="03g07yfw1l0j2xqjl74pvidlrrv2ia2kmhb94asj5d5xq7hr1004"; depends=[data_table fst httr jsonlite]; }; standby = derive2 { name="standby"; version="0.1.0"; sha256="05kn866ibk0a0ncbsmfb31nhj7cfdidd8smvnpyrvw9rjs8k37hv"; depends=[htmltools shiny]; }; stapler = derive2 { name="stapler"; version="0.7.1"; sha256="1bzhahn72fzm2bjpis76hphv8whnkp2jq8bm1qldadhng4z1nsak"; depends=[matrixStats RNifti]; }; @@ -18140,10 +18416,10 @@ in with self; { stars = derive2 { name="stars"; version="0.6-4"; sha256="0mqd2dfa8jhxjmfphvv3rkw2lri5sz49042asj5lyln3wkylqjj2"; depends=[abind classInt rlang sf units]; }; starsExtra = derive2 { name="starsExtra"; version="0.2.7"; sha256="06l9rpgw1dmvvn3389zzqrq4y87192k4zzj7xgvwzrdlrcxsqdh7"; depends=[mgcv nngeo sf stars units]; }; starsTileServer = derive2 { name="starsTileServer"; version="0.1.1"; sha256="04z3xaijhgn5g10vvx19lya6v17ypcq00w4jlgkap3fafw61pqhn"; depends=[assertthat leaflet plumber png R6 rlang sf stars units]; }; - starschemar = derive2 { name="starschemar"; version="1.2.2"; sha256="0988kzdf4082yppmph918rnrrb6ss6bqayalffdxjs4dw2h0nlc3"; depends=[dplyr generics purrr rlang snakecase tibble tidyr]; }; - startR = derive2 { name="startR"; version="2.3.0"; sha256="19mx63231wkxkh79k6fgpw3bs2hcq7kmli4cvrw17ka3jq2b9l56"; depends=[abind bigmemory ClimProjDiags easyNCDF future multiApply PCICt s2dv]; }; + starschemar = derive2 { name="starschemar"; version="1.2.4"; sha256="0q2d4a7frg7ffcsgs0sgkq7a3aazpbg3fbcxf0ygiwg4v4djir57"; depends=[dplyr generics purrr rlang snakecase tibble tidyr]; }; + startR = derive2 { name="startR"; version="2.3.1"; sha256="03wdaqiyrjhihsnw33z87baplv854znh4l7ww4ywmp17hl6hr7l8"; depends=[abind bigmemory ClimProjDiags easyNCDF future multiApply PCICt s2dv]; }; starter = derive2 { name="starter"; version="0.1.14"; sha256="01iq1srny5ljfj3vlgpigxvkyawhpiqvgc5wzafydh8rrzfyj1ld"; depends=[cli dplyr gert glue R_utils renv rlang rprojroot rstudioapi]; }; - startup = derive2 { name="startup"; version="0.20.0"; sha256="1l03jmlhc32jbf6clxzdfxb0rinwl8sb67hikx6hzbk8k9x2xvc2"; depends=[]; }; + startup = derive2 { name="startup"; version="0.21.0"; sha256="0iwq1nbiv2j78g17mq566qqv5p5msk1gmi0bb0hs1j1xx9vjamnl"; depends=[]; }; startupmsg = derive2 { name="startupmsg"; version="0.9.6"; sha256="0vkqxir4ady4dn9s70dfg1fxck2xg8vnmrmxjzvk01i6pc9zyq0x"; depends=[]; }; starvars = derive2 { name="starvars"; version="1.1.10"; sha256="1mq31g05ahpsmda2zrmkg1dlaqqk4c9hm9fjzhgrsxlg4j3klbbf"; depends=[doSNOW foreach ks lessR MASS matrixcalc optimParallel quantmod vars xts zoo]; }; starvz = derive2 { name="starvz"; version="0.7.1"; sha256="0j22605vh0fpf17l78i3x9q5xia9qx841sg7hxhcjybn7vfkafsj"; depends=[arrow BH data_tree dplyr ggplot2 gtools lpSolve magrittr patchwork purrr RColorBrewer Rcpp readr rlang stringr tibble tidyr yaml zoo]; }; @@ -18161,12 +18437,12 @@ in with self; { states = derive2 { name="states"; version="0.3.2"; sha256="1ffaj7rzqnwzki4hr5f90hz3racaigmk8qbzanxbbbfsy881avmr"; depends=[dplyr lifecycle rlang]; }; statespacer = derive2 { name="statespacer"; version="0.5.0"; sha256="18bir894yrbff5h5pbqr342xckb78zzb24x2yrv9ffhrl5dvyk5d"; depends=[Rcpp RcppArmadillo Rdpack]; }; statgenGWAS = derive2 { name="statgenGWAS"; version="1.0.9"; sha256="0isjzb83vwml654b1azgvnwiijpihdk24b3jamls976is359qvrv"; depends=[data_table ggplot2 Rcpp RcppArmadillo sommer]; }; - statgenGxE = derive2 { name="statgenGxE"; version="1.0.5"; sha256="1kq5bin4k66d8l9l4z2b0gx6s8ick5fim0qcsjayvgip25gkxf5z"; depends=[emmeans ggplot2 gridExtra knitr lme4 statgenSTA xtable]; }; + statgenGxE = derive2 { name="statgenGxE"; version="1.0.6"; sha256="12y722q9hj6ipcl2d8pnl6c3xf0pp1hkv89kxm3np1alid8npc3a"; depends=[emmeans ggplot2 gridExtra knitr lme4 rlang statgenSTA xtable]; }; statgenHTP = derive2 { name="statgenHTP"; version="1.0.6.1"; sha256="1lhs72y9p98vas7iv1zgqb9zac6plzgv5lffccyg75r88784xn1s"; depends=[animation factoextra ggforce ggnewscale ggplot2 gridExtra LMMsolver locfit lubridate Matrix reshape2 rlang scales spam SpATS]; }; statgenIBD = derive2 { name="statgenIBD"; version="1.0.6"; sha256="10avfpm8l2l0yflb979plnijb1gfpk9lsqrc5nri1gsfgqfv7v8p"; depends=[data_table ggplot2 Matrix Rcpp RcppArmadillo rlang stringi]; }; statgenMPP = derive2 { name="statgenMPP"; version="1.0.2"; sha256="1qpf9gic9671hr6zyj56sqwx9wl51qr6gj84rfssdla718h766im"; depends=[data_table foreach ggplot2 gridExtra LMMsolver Matrix scales spam statgenGWAS statgenIBD stringi]; }; statgenQTLxT = derive2 { name="statgenQTLxT"; version="1.0.1"; sha256="0i17xl4q0alyd2w4giynarv7wqhimvbd58chqrjxy4yyq419jzry"; depends=[data_table foreach Rcpp RcppArmadillo sommer statgenGWAS]; }; - statgenSTA = derive2 { name="statgenSTA"; version="1.0.11"; sha256="0lashqhahmb0n01a1cy6clv95z5ypm5kgmdiwhvdvdq1l50cz92z"; depends=[emmeans ggplot2 ggrepel gridExtra knitr lme4 mapproj maps qtl rlang scales SpATS xtable]; }; + statgenSTA = derive2 { name="statgenSTA"; version="1.0.12"; sha256="17svv7193wlmgsslcghr2gpbzhn8v1c5pwmk1ksh7l5imn792z21"; depends=[emmeans ggplot2 ggrepel gridExtra knitr lme4 mapproj maps qtl rlang scales SpATS xtable]; }; stationaRy = derive2 { name="stationaRy"; version="0.5.1"; sha256="1620fdlybn3hr96yngnp802imr9b7n90835lyyd86r2wn6psdzvl"; depends=[downloader dplyr lubridate lutz magrittr progress readr stringr tidyr]; }; stationery = derive2 { name="stationery"; version="1.0"; sha256="07kwlmambjv7njgpw1dhsm2zrv1lk6xj2k6a6psysjllrf5zz8ga"; depends=[knitr kutils rmarkdown]; }; statip = derive2 { name="statip"; version="0.2.3"; sha256="0kymc3ds1nx0h11ffmm3vmqr1w34gd0k788vf72x2v45h8c1ma2n"; depends=[clue rpart]; }; @@ -18177,9 +18453,9 @@ in with self; { statnetWeb = derive2 { name="statnetWeb"; version="0.5.6"; sha256="1haf2kr1mwvaz4hlwla2ysbcy3sbfcg3i4hyiy9y6lcffvy4w9w0"; depends=[ergm lattice latticeExtra network RColorBrewer shiny sna]; }; statnipokladna = derive2 { name="statnipokladna"; version="0.7.2"; sha256="1n7gvr57c27ilxrnpmr0bz6hc0d39lp6rnn4dkqdwdapzyhfymq4"; depends=[cli curl dplyr httr jsonlite lifecycle lubridate magrittr purrr readr rlang stringi stringr tibble tidyr xml2]; }; statprograms = derive2 { name="statprograms"; version="0.2.0"; sha256="0m7px7fmpz2zzlfdi7rbllcjvcjp8iy94f6fa1w4xinh7vz3y6vq"; depends=[]; }; - statpsych = derive2 { name="statpsych"; version="1.4.0"; sha256="16wkwc9vfjrwmqaiijs2xwhfmj5if9h2ppziqvd3k70gzbz0l1mf"; depends=[mathjaxr mnonr Rdpack]; }; + statpsych = derive2 { name="statpsych"; version="1.5.0"; sha256="0sgdz97svj2krg6576pc74jiqpws4qjvvk351d88av3cc9s3g9y8"; depends=[mathjaxr mnonr Rdpack]; }; statquotes = derive2 { name="statquotes"; version="0.3.2"; sha256="0y805alr98zz306jjnikggdd02c3yrp5izzwhh457bsb85i22yri"; depends=[stringr tidytext wordcloud]; }; - stats19 = derive2 { name="stats19"; version="3.0.0"; sha256="1lki2rcpp66kk3a1zwsyjczxjrid2skvdah3srbvz481vzq95zs9"; depends=[readr sf]; }; + stats19 = derive2 { name="stats19"; version="3.0.2"; sha256="1v02mlpk513jakvljwf0a1qjlaij1w37abs4la2isjlvfdsjc9i8"; depends=[readr sf]; }; stats4teaching = derive2 { name="stats4teaching"; version="0.1.0"; sha256="1i2v97k6c75096hp23zpffmdbajdzzkqp508p9dvw841vpx2wxdn"; depends=[asbio car clusterGeneration knitr MASS MVN nortest psych pwr rstatix]; }; statsExpressions = derive2 { name="statsExpressions"; version="1.5.2"; sha256="1lqx6wcip0vzlrlhj8yg09009r1r12xg1wxkq93hrlkvya6wm66k"; depends=[afex BayesFactor correlation datawizard dplyr effectsize glue insight magrittr parameters performance PMCMRplus purrr rlang tibble tidyr withr WRS2 zeallot]; }; statsearchanalyticsr = derive2 { name="statsearchanalyticsr"; version="0.1.4"; sha256="0m2zv5sgv7w9yk6q7rwx8x2zy6xx5w0d6c9vynddr08pn4mdqjhs"; depends=[glue httr jsonlite lubridate purrr stringr tibble tidyr]; }; @@ -18193,25 +18469,25 @@ in with self; { stdvectors = derive2 { name="stdvectors"; version="0.0.5"; sha256="0gxylknr146qyg9aj22md076cdhrsz75dg25a1hx8525cm71nwd6"; depends=[Rcpp]; }; steadyICA = derive2 { name="steadyICA"; version="1.0"; sha256="0mcalbsgajdpk45k9vpyavn079063hw4ihkw72n9wcy5nb0da14g"; depends=[clue combinat MASS Rcpp]; }; steepness = derive2 { name="steepness"; version="0.3-0"; sha256="1lv2n4s8dj7axsmwmpfp4aw6v530r7437f44533pbx6p4n71hpzl"; depends=[]; }; - stelfi = derive2 { name="stelfi"; version="1.0.0"; sha256="0fj9zg7jgfrripqagyj6ylhzz8vrsiagh3qrq596jr2z58ap54xa"; depends=[dplyr fmesher ggplot2 gridExtra Matrix RcppEigen sf TMB]; }; + stelfi = derive2 { name="stelfi"; version="1.0.1"; sha256="06sj1az5803xh1ikkawdrp0c8yc1kh8iqky6vazxr516hc3b0f9w"; depends=[dplyr fmesher ggplot2 gridExtra Matrix RcppEigen sf TMB]; }; stellaR = derive2 { name="stellaR"; version="0.3-4"; sha256="0spn25fbsfswx2rshzk34pqkicynyl256a4f7xrh51bhyh9qff44"; depends=[]; }; stemmatology = derive2 { name="stemmatology"; version="0.3.2"; sha256="1l2y4jlszz1dnafdl2wqqfgdjis07i3gzfnp1v1af32pvjy4zqhw"; depends=[cluster igraph xml2]; }; stenR = derive2 { name="stenR"; version="0.6.9"; sha256="19vn7123wys1jqrm4y8f6b4kvwygi1ql6ady2d5jz93vf29ihdzj"; depends=[cli data_table dplyr moments R6 rlang]; }; stencilaschema = derive2 { name="stencilaschema"; version="1.0.0"; sha256="117vl2h78ndnb70s8mpd0bs1n6h1vizv4wzn6g4y9j12ma63nldb"; depends=[]; }; stepPenal = derive2 { name="stepPenal"; version="0.2"; sha256="08gizl6c606ibbv7x2rdvfw37rghkrprwszha79yngkzpajw8gql"; depends=[caret dfoptim glmnet mvtnorm pROC]; }; stepPlr = derive2 { name="stepPlr"; version="0.93"; sha256="1i54nyz8z5vq3mzfh6h2vd1q0hsdazc4mhrj9ad0zdvn0qnz61lv"; depends=[]; }; - stepR = derive2 { name="stepR"; version="2.1-8"; sha256="0gvlxxl82190ra99qwnwxx7q81w228m04x9c687hrihpmldlqjpp"; depends=[digest lowpassFilter R_cache Rcpp]; }; + stepR = derive2 { name="stepR"; version="2.1-9"; sha256="1dw402p49j2m076b7ybmnfhxhxb4i8fnalqqblxq2ax7rl69i2vz"; depends=[digest lowpassFilter R_cache Rcpp]; }; stepSplitReg = derive2 { name="stepSplitReg"; version="1.0.3"; sha256="04ks599bb3rbyc81kyakj6nmj7i8fvkb1pild0gd3i6j84j70071"; depends=[nnls Rcpp RcppArmadillo SplitGLM]; }; stepdownfdp = derive2 { name="stepdownfdp"; version="1.0.0"; sha256="1yqzxn4d52ih03f0mpvb9dw9pn9jfbgnyay1pfhh112zml5h6i3m"; depends=[pracma]; }; stepgbm = derive2 { name="stepgbm"; version="1.0.1"; sha256="1wcc4m9alphacdf9df5z29hz881625czxpyq93kzwc0nhnvz2gp0"; depends=[spm steprf]; }; stepjglm = derive2 { name="stepjglm"; version="0.0.1"; sha256="0xsb0wg7ka4ska2jkzaic7kqdzj2fkhpf5sxr3a116f2najj9ax2"; depends=[rsq]; }; stepmixr = derive2 { name="stepmixr"; version="0.1.1"; sha256="015pn37bw4bdlgk9x6r20i84kfvk7vkp3gzsi1dzpa01z01wnblp"; depends=[reticulate]; }; - stepp = derive2 { name="stepp"; version="3.2.5"; sha256="0srjx950hy7v1xmhhnimvndpyz2wm8l03z67z0zxjg2w7wnqrqvs"; depends=[car rstudioapi scales survival]; }; + stepp = derive2 { name="stepp"; version="3.2.6"; sha256="0b2jq9fdnakqrwcss4cw8nd5zq122w2ba607z71fmp1gx8rw4sf7"; depends=[car rstudioapi scales survival]; }; steprf = derive2 { name="steprf"; version="1.0.2"; sha256="1wscxnglxi61agmfn1zmhh75c7h5394r8d8khr02p22a234npqqi"; depends=[psy randomForest spm spm2]; }; steps = derive2 { name="steps"; version="1.3.0"; sha256="0yvqz5jhzwqkm3gphb2mmlq1ip6sr8g6c09hirs827j12dj63ixf"; depends=[future future_apply memuse raster rasterVis Rcpp viridisLite]; }; - stevedata = derive2 { name="stevedata"; version="1.0.0"; sha256="18d6by3qb6xrlxs70hzfln5y5wxhd0zjvnc3rc7a2cz9qc2cln0w"; depends=[]; }; + stevedata = derive2 { name="stevedata"; version="1.1.0"; sha256="0pb5w0jzyf4igi76n9cr97zxk5l8m7mjjjn18bd71w3mbpnsig7r"; depends=[]; }; stevedore = derive2 { name="stevedore"; version="0.9.6"; sha256="0mx4l7yiicvpri5qdw9czlvr27a9753a6z98s8k19lbz58nim1wr"; depends=[crayon curl jsonlite yaml]; }; - stevemisc = derive2 { name="stevemisc"; version="1.6.0"; sha256="0d1c9sad267pblyk108z7ip8l2z87fbmzrnglzhzrv6cmmfv6jrd"; depends=[arm dplyr forcats ggplot2 httr labelled lme4 magrittr purrr rlang rmarkdown stringr tibble tidyr]; }; + stevemisc = derive2 { name="stevemisc"; version="1.7.0"; sha256="1xngshwsqd3z0zygrzxwnmr3jwha2kbw7fcf0vc0yngqg62gzrvn"; depends=[arm dplyr forcats ggplot2 httr labelled lme4 magrittr purrr rlang rmarkdown stringr tibble tidyr]; }; stevetemplates = derive2 { name="stevetemplates"; version="0.9.0"; sha256="0dbph1wpb07m73jx3avayncq8682yjpdjinlzhc4z1czlkj4wdm4"; depends=[rmarkdown]; }; stevethemes = derive2 { name="stevethemes"; version="0.1.0"; sha256="06bv1s3yjw2jiqc3izlr4pj7ws3wfq7s33fr1b614cb6hbj6pvan"; depends=[ggplot2 rlang systemfonts]; }; stfit = derive2 { name="stfit"; version="0.99.9"; sha256="0668nnsgkdd2v7bx06wnq8sc0asbi19p4752jm0hj2jziiibk0kn"; depends=[abind doParallel fda foreach Matrix raster rasterVis RColorBrewer Rcpp]; }; @@ -18219,14 +18495,14 @@ in with self; { stickyr = derive2 { name="stickyr"; version="0.1.2"; sha256="0a1jpkphh538wf1bgcm1qyppi2mp99v9d4qa3nlgxf18hnga3jvg"; depends=[dplyr ellipsis generics pillar purrr rlang tibble tidyselect vctrs]; }; stilt = derive2 { name="stilt"; version="1.3.0"; sha256="0b1bs849hw2wcvaldybxk8h8wgwl6p7x4i7winncvngmhplgrvx4"; depends=[fields]; }; stim = derive2 { name="stim"; version="1.0.0"; sha256="0a2lcyhh12jzg2znyc648vs8pl19098wz3z60kgd5r9jns707ca4"; depends=[lavaan Ryacas]; }; - stima = derive2 { name="stima"; version="1.2.1"; sha256="091pjjr2pvd93l01szyj5gr9ixv1h90yd18h678nhpn0fncimszv"; depends=[rpart]; }; + stima = derive2 { name="stima"; version="1.2.4"; sha256="0455disf5lpgxns0mwgmqbglyr9ih2v85vqp7hmardq028axwxrk"; depends=[rpart]; }; stinepack = derive2 { name="stinepack"; version="1.4"; sha256="0crl77gr4x2bz2zp0a0lqiw5iqlrcx7vj67igkbzg64d1fxai85d"; depends=[]; }; stlARIMA = derive2 { name="stlARIMA"; version="0.1.0"; sha256="1bh88dd9md8w8qhmha02v2b7cz0pfk6yrc5bhxj8xv9cwanl7g6r"; depends=[forecast]; }; stlELM = derive2 { name="stlELM"; version="0.1.1"; sha256="1q3lcfqq06jfky388v7iilnnqbr5f4gq451xkc2kl04yl0dwcv2h"; depends=[forecast nnfor]; }; stlTDNN = derive2 { name="stlTDNN"; version="0.1.0"; sha256="1j2f9kxlry15xp7bc03h5jr7v8gzq8frdxyzhq9s78m3d3dbixf4"; depends=[forecast nnfor]; }; stlnpp = derive2 { name="stlnpp"; version="0.3.9"; sha256="0d8afddz7gwdmrciz8bvwfxil7bfpf9h81rcb52mmr7j9da36mp4"; depends=[spatstat spatstat_explore spatstat_geom spatstat_linnet spatstat_random]; }; stlplus = derive2 { name="stlplus"; version="0.5.1"; sha256="14728xsm982z9sg4rbqg307pbwqlsiyzj8z3sr9wr6fi0dayf6z5"; depends=[lattice Rcpp yaImpute]; }; - stm = derive2 { name="stm"; version="1.3.6.1"; sha256="0izf68s8n6jlzksnn2md0apb4b8gm6513r0aa45yrm71gb0v29yc"; depends=[data_table glmnet lda Matrix matrixStats quadprog quanteda Rcpp RcppArmadillo slam stringr]; }; + stm = derive2 { name="stm"; version="1.3.7"; sha256="0cvv6q5r55iqk327rav25dymvnn77rj8chmgkbkwd0c1dpqf4x5q"; depends=[data_table glmnet lda Matrix matrixStats quadprog quanteda Rcpp RcppArmadillo slam stringr]; }; stmCorrViz = derive2 { name="stmCorrViz"; version="1.3"; sha256="1a4pckrbzsihyf1bqvw3cl0hxrc4yq1pnkgxgf4b8jday6zkxwcv"; depends=[jsonlite SnowballC stm tm]; }; stmgp = derive2 { name="stmgp"; version="1.0.4"; sha256="1yf0hr5gaql424ikjm9ra50vz4ppfsshhf89xphl7c9v9a6bjvw0"; depends=[MASS]; }; stmgui = derive2 { name="stmgui"; version="0.1.6"; sha256="1fn2m5l7y3p1riw39g6r3hpjxdccygih7yipp7dvc4msl9fm4h5c"; depends=[markdown shiny shinyBS shinyjs shinythemes stm tm]; }; @@ -18236,7 +18512,7 @@ in with self; { stochLAB = derive2 { name="stochLAB"; version="1.1.2"; sha256="1gixw8rjhivcz71ypmbn0cs27gi5bsmmm37nsx0psas7nvw8zwxi"; depends=[cli dplyr glue logr magrittr msm pracma purrr rlang tibble tidyr]; }; stochQN = derive2 { name="stochQN"; version="0.1.2-1"; sha256="1lfzivl745dj94kap103arz0zy75wk69kc6v84xaaxk7ad3icnaj"; depends=[]; }; stochprofML = derive2 { name="stochprofML"; version="2.0.3"; sha256="0j6m2byh7w9kcbp3mfvmg6fm6z0dq8k4qabj1yfkl0d1y2ifd1zd"; depends=[MASS numDeriv]; }; - stochvol = derive2 { name="stochvol"; version="3.2.1"; sha256="074paxqjbjsxd22nrwmfqwv0799q5wgknp6vdqy74qp8a5svgdq1"; depends=[coda Rcpp RcppArmadillo]; }; + stochvol = derive2 { name="stochvol"; version="3.2.3"; sha256="0h3xjbf2882ga5zy0fyarqgdnd0p71n6ib662sqhifqiadz4dddq"; depends=[coda Rcpp RcppArmadillo]; }; stochvolTMB = derive2 { name="stochvolTMB"; version="0.2.0"; sha256="07m3qz8j1sw37lrxzmbkbifd3nsdvd2blbca8vr1aq5bbafr1g1b"; depends=[data_table ggplot2 MASS RcppEigen sn TMB]; }; stockAnalyst = derive2 { name="stockAnalyst"; version="1.0.1"; sha256="1pqghpyvwylc00hcnqgcr03js3dz6id012ixn5gj3d3wqyh008bl"; depends=[]; }; stockR = derive2 { name="stockR"; version="1.0.76"; sha256="1n1xnz97x82bc9n930cwm11sl8r40224psya5z29a2zp449a5540"; depends=[gtools RColorBrewer Rcpp]; }; @@ -18255,17 +18531,18 @@ in with self; { stplanr = derive2 { name="stplanr"; version="1.1.2"; sha256="0n32d8916qkavaqr4016gnggyqrh75lndlvayl8qxq88lmjps2bf"; depends=[curl data_table dplyr httr jsonlite lwgeom magrittr nabor od pbapply Rcpp rlang sf sfheaders]; }; stpm = derive2 { name="stpm"; version="1.7.12"; sha256="16kp69356bj1s26iwwysxdyr87kd3jqhj2gmmz4vc003ai63ga6y"; depends=[MASS nloptr Rcpp RcppArmadillo sas7bdat survival]; }; stpp = derive2 { name="stpp"; version="2.0-7"; sha256="1w9jn71ha817gldfhkmr2vfx3nkr78g1y662rfxg6flx2wyxs3kq"; depends=[ggplot2 gridExtra KernSmooth plot3D rgl rpanel spatstat_explore spatstat_geom spatstat_random splancs]; }; - stppSim = derive2 { name="stppSim"; version="1.3.1"; sha256="0hpy6kxr9m5hmkgnpfs3r1mp5nn9hy52sxb3i1hs9d437mxmhjx6"; depends=[chron cowplot data_table dplyr future_apply geosphere ggplot2 gstat ks leaflet lubridate magrittr otuSummary progressr raster sf SiMRiv sp sparr spatstat_geom splancs stringr terra tibble tidyr]; }; + stppSim = derive2 { name="stppSim"; version="1.3.2"; sha256="00wxbahfamxf4y2fmscq48n5j81qx4xsnh8har2mhhnqvaiikbvz"; depends=[chron cowplot data_table dplyr future_apply geosphere ggplot2 gstat ks leaflet lubridate magrittr otuSummary progressr raster sf SiMRiv sp sparr spatstat_geom splancs stringr terra tibble tidyr]; }; stpphawkes = derive2 { name="stpphawkes"; version="0.2.1"; sha256="1mfhvfjlshhigyl5bfagjiv3q8dizqf89ikyifkchylni5szblbs"; depends=[extraDistr interp Rcpp RcppArmadillo RcppGSL RcppProgress]; }; - str2str = derive2 { name="str2str"; version="0.2.1"; sha256="180m261hr0qr3mnm8hbvjbw3q44cr1kfrnq97fvkpypigdycd9z4"; depends=[abind checkmate plyr reshape]; }; + str2str = derive2 { name="str2str"; version="1.0.0"; sha256="1hzi8ns2v9y0mzv59aafh5gq4vyza2qbsmaxpj945nmfi4x3qqwi"; depends=[abind checkmate plyr reshape]; }; strand = derive2 { name="strand"; version="0.2.0"; sha256="0gd9nnbdilvk4bszg77bxilan6qpg1np7c38w1b7j5sr3r30y5in"; depends=[arrow dplyr ggplot2 lubridate Matrix R6 Rglpk rlang tibble tidyr yaml]; }; stranslate = derive2 { name="stranslate"; version="0.1.1"; sha256="09ps012v63m66ibmlcz3nbvizzq7v7lc0laf8x6fspswvb7a2zpb"; depends=[crayon knitr stringr]; }; strap = derive2 { name="strap"; version="1.6-0"; sha256="1c4p9gjjjjc7zjml7r7qhb040va8s4x16jqia3j1j5h56d6wlh7m"; depends=[ape geoscale pbapply]; }; strat = derive2 { name="strat"; version="0.1"; sha256="1axxrp750kjzcgxjdqfscjmryv1mkv4l23zk8k23z8l4ymhd2f5w"; depends=[Hmisc Rcpp RcppArmadillo]; }; stratEst = derive2 { name="stratEst"; version="1.1.6"; sha256="0m41866xr21h4mih4z98y6pcrp2ws0mxxx157vdhbv7rhlh5djvp"; depends=[Rcpp RcppArmadillo]; }; strata_MaxCombo = derive2 { name="strata.MaxCombo"; version="0.0.1"; sha256="1iafnxa0z0rsal3v1y1l9ddzdgi594abhc4jkrsqp33316cmm2az"; depends=[mvtnorm]; }; - stratallo = derive2 { name="stratallo"; version="2.2.0"; sha256="0b47yx287283vjvmv16il4q3k8fs8n83ac64ygwgjdq301gdj85z"; depends=[checkmate lifecycle]; }; + stratallo = derive2 { name="stratallo"; version="2.2.1"; sha256="0v29c8qva2clmhdyrj7sn4cqx0wq00vjhnlh355iirm8vi9nhky0"; depends=[checkmate lifecycle]; }; stratamatch = derive2 { name="stratamatch"; version="0.1.9"; sha256="1z395355kac0wd4f0m1ijh851m046ra8h1wam04if4qp00ychajp"; depends=[dplyr Hmisc magrittr rlang survival]; }; + stratastats = derive2 { name="stratastats"; version="0.2"; sha256="038gm0253kb980w1b9hzf11fjg76hlavihhyb0jsgrcfsxag93v7"; depends=[abind gt]; }; stratbr = derive2 { name="stratbr"; version="1.2"; sha256="15vkymmc61yz9szhfhc5663hfyqvh499ahwhr9mv1lhv5bikk0kb"; depends=[Rglpk snowfall stratification]; }; strategicplayers = derive2 { name="strategicplayers"; version="1.0"; sha256="19vijrlzawd701vvk9ig7yhzbirh39dxxcwfz8ywwvxxiaky5x55"; depends=[sna]; }; stratification = derive2 { name="stratification"; version="2.2-7"; sha256="0vsra08lbq2nabd9lizakgpvn5lrp0lc961jvpns59l0b4wvdqab"; depends=[]; }; @@ -18279,21 +18556,21 @@ in with self; { streamDepletr = derive2 { name="streamDepletr"; version="0.2.0"; sha256="0pa0hsnhscsa98xkqzg7l83yagzq1r6m250m3m4r79baab8ndqp4"; depends=[dplyr Rmpfr sf]; }; streamMOA = derive2 { name="streamMOA"; version="1.3-0"; sha256="0mdkwbph225xsjwnihmzj2gn56n7w6ffd1h432kjlj3b2lwdsyyn"; depends=[rJava stream]; }; streamR = derive2 { name="streamR"; version="0.4.5"; sha256="1clx3b0j2515r1nmnl6ki7qw5n54q3x2jvqv3zrc00kq71mlj7ix"; depends=[ndjson RCurl rjson]; }; - streambugs = derive2 { name="streambugs"; version="1.3"; sha256="06h7721yjjz1gz8kp32fq96cy0v5a0dhy9q0s20fp3wyycb2jy37"; depends=[deSolve]; }; + streambugs = derive2 { name="streambugs"; version="1.4"; sha256="0j7fi5rvs2apkzgyk9idpdcbxaa7kqj650gycfsq2md23fl75jpw"; depends=[deSolve]; }; stressaddition = derive2 { name="stressaddition"; version="3.1.0"; sha256="14ggy4ka9kll723jdir22g5l5xkwdckvd08gg6rxsmxryhznqd4a"; depends=[drc plotrix]; }; stressr = derive2 { name="stressr"; version="1.0.0"; sha256="00b93gfh1jd5r7i3dhsfqjidrczf693kyqlsa1krdndg8f0jkyj7"; depends=[lattice latticeExtra XML xts]; }; - strex = derive2 { name="strex"; version="1.6.0"; sha256="1fxg07n8cjvvgpbzqhyx5ma5bv6vax1yw0rbfdqfzr79v6k5x3n7"; depends=[checkmate magrittr rlang stringi stringr]; }; + strex = derive2 { name="strex"; version="1.6.1"; sha256="1vz5zrvf052bg2y48yvkci4hciknvyw5gpbvnklgyny5lzlqvyiq"; depends=[checkmate magrittr rlang stringi stringr]; }; strider = derive2 { name="strider"; version="1.3"; sha256="114j0qpdyg8rrhj68zq596pgc4h7ja39n0rfxf0x9qg7imhaj1h6"; depends=[BH Rcpp]; }; - string2path = derive2 { name="string2path"; version="0.1.5"; sha256="13a315kp53psjjqxca2shrg8lcx3mx9k5bb9mbn034cx1z6zb6kg"; depends=[cli tibble]; }; + string2path = derive2 { name="string2path"; version="0.1.6"; sha256="1pv031684l198a96glgx65pp1ri9wvixk9zqmxbqdfb6d86ls9rp"; depends=[cli tibble]; }; stringb = derive2 { name="stringb"; version="0.1.17"; sha256="0bfwwbg64nzxrx30cndqvdlhanjkx6875lg5dzm9cbwvwg2wbxcn"; depends=[backports]; }; - stringdist = derive2 { name="stringdist"; version="0.9.10"; sha256="1s3cy2q6l4ppgslwfbfydi5f3kzshfhzkb25gz546n7jgw5jxm3g"; depends=[]; }; - stringfish = derive2 { name="stringfish"; version="0.15.8"; sha256="16w3i3d7jw2s1hzxr3mngrh7yjxvhswqdlpjw5g4z25i84lixcnz"; depends=[Rcpp RcppParallel]; }; + stringdist = derive2 { name="stringdist"; version="0.9.12"; sha256="1i365vwjx8kk47wzry8d3zhzrlv51hn76s2ipk9vi121zx939171"; depends=[]; }; + stringfish = derive2 { name="stringfish"; version="0.16.0"; sha256="14vrg6mkwwgw1klgpvjn7936yfxav55rainz71xjjih2j21vq21n"; depends=[Rcpp RcppParallel]; }; stringformattr = derive2 { name="stringformattr"; version="0.1.2"; sha256="0x56k30clj5ajk0qg5sr8b9l0asz6ldivwr1ddy1vp1djliih1fx"; depends=[stringr]; }; - stringi = derive2 { name="stringi"; version="1.7.12"; sha256="02g0464sbprrbjlacx727p9ad1s5nbxl2mnvfmm9h7q000lsrs7g"; depends=[]; }; + stringi = derive2 { name="stringi"; version="1.8.3"; sha256="09a964g8q3iphq24ln9c9g5158ynr75pfh3ghddarn0xvn7bw0hn"; depends=[]; }; stringmagic = derive2 { name="stringmagic"; version="1.0.0"; sha256="06jm11n80r821h40x3qvnbkf53283mnrhsg5w7x7f1fp5qmcfll1"; depends=[Rcpp]; }; - stringr = derive2 { name="stringr"; version="1.5.0"; sha256="0fk34ql5ak57f06l10ai300kxay6r7kkkyfanh8r24qaf3bmkcaj"; depends=[cli glue lifecycle magrittr rlang stringi vctrs]; }; + stringr = derive2 { name="stringr"; version="1.5.1"; sha256="1pj5xwg8kq2jllmszgkw96qj37wlb0x0vx4f3m5j211zpd8yrbd4"; depends=[cli glue lifecycle magrittr rlang stringi vctrs]; }; stringstatic = derive2 { name="stringstatic"; version="0.1.2"; sha256="0kj85yas07l9xl49l2j0bk42ymdg57fmgyk45wwl0kmxp146skfq"; depends=[]; }; - stringx = derive2 { name="stringx"; version="0.2.5"; sha256="0h6j67krpk1yr0qiq76grlw1dwdxzj1h61fvlbah86k444mfg91a"; depends=[stringi]; }; + stringx = derive2 { name="stringx"; version="0.2.6"; sha256="0n11y2w9gm37kfkg44df95ib1xbjglz7ys9ffw05pbc71ai0njjp"; depends=[stringi]; }; strip = derive2 { name="strip"; version="1.0.0"; sha256="1j3kq6w8k66z45rpd1cgxplpnldzbyqklgs4bnbv906pyd8wk9ak"; depends=[rlist]; }; stripless = derive2 { name="stripless"; version="1.0-3"; sha256="08mdp7kq6r5bk77j09477d1dnn7iwa346pr24b5bqsxwnbknyrsr"; depends=[lattice]; }; striprtf = derive2 { name="striprtf"; version="0.6.0"; sha256="1c8z2qf1kp43ir4dmyxq6hc46dclq8vx3ggkj02p8j1icjswm9bh"; depends=[magrittr Rcpp stringr]; }; @@ -18334,7 +18611,7 @@ in with self; { suggests = derive2 { name="suggests"; version="0.1.0"; sha256="05z2winamc8rdvkvhsbiz7r183qh8balrhv9r2sr3crn0rh2fm62"; depends=[]; }; sugrrants = derive2 { name="sugrrants"; version="0.2.8"; sha256="08cs74afpkvjh32hlrwbl8sdsi3p0ga4ziw32r9pihs28a060fam"; depends=[dplyr ggplot2 gtable lubridate rlang]; }; sumFREGAT = derive2 { name="sumFREGAT"; version="1.2.5"; sha256="10clll3c0ws2mccdp9grz3qw75kv7ydffak2vv9ijky8n1b39qa7"; depends=[GBJ Matrix seqminer]; }; - sumR = derive2 { name="sumR"; version="0.4.14"; sha256="11r628mlilwbz1yh3qw88il13gyqzdba3s5ky5jcza5b6mpwyvgl"; depends=[matrixStats]; }; + sumR = derive2 { name="sumR"; version="0.4.15"; sha256="1s4id6yrwib0b6l1a3pkihmqmishwjkg6pz25mr17aqmb8k400yy"; depends=[matrixStats]; }; sumSome = derive2 { name="sumSome"; version="1.1.0"; sha256="1a70kxvp9d9hn38jnvgk934vwbz4bjb6k4kcngp6rp9gv9h2bh2r"; depends=[ARIbrain pARI Rcpp RNifti]; }; summariser = derive2 { name="summariser"; version="2.3.0"; sha256="0zliqy8dlcr2yy4ky8k68qn256xvpla8fcv7via19y40bmla37ic"; depends=[dplyr]; }; summarytools = derive2 { name="summarytools"; version="1.0.1"; sha256="0gr95cd1ja8di6s0xghk6w7nj3bh3z4g7j7ixdy7f88q681aixgx"; depends=[base64enc checkmate dplyr htmltools lubridate magick matrixStats pander pryr rapportools tibble tidyr]; }; @@ -18348,19 +18625,19 @@ in with self; { superMICE = derive2 { name="superMICE"; version="1.1.1"; sha256="0wf043vyd89a5jdvm128rqmfrnm9c0lhir35jyzy20rm75aqqh1w"; depends=[mice SuperLearner]; }; superb = derive2 { name="superb"; version="0.95.7"; sha256="02pc8wwkhvkrfmvv2cqmpwkiwyy6xyps7kdhiwkph1jagw5l6qgk"; depends=[foreign ggplot2 lsr MASS plyr Rdpack shiny shinyBS stringr]; }; superbiclust = derive2 { name="superbiclust"; version="1.2"; sha256="0mk3d820skp99hl8ilwic2fz90yb9dwy2jq3vfjb726gj1qich3b"; depends=[biclust fabia Matrix]; }; - supercells = derive2 { name="supercells"; version="0.9.1"; sha256="0dl9039ymzckrn8nlfpb93yfmcza46qjhk0f8pr5m0ydf4qbdds0"; depends=[cpp11 future_apply philentropy sf terra]; }; + supercells = derive2 { name="supercells"; version="0.9.5"; sha256="1695dsd6l3mxa7wpzmxarpll1rm70cq9l5vkbz4gyf1238vqlqjz"; depends=[cpp11 future_apply philentropy sf terra]; }; supercompress = derive2 { name="supercompress"; version="1.1"; sha256="1kz04m37r1g4lx4y0kzjn77p3wra2rq21y93v9llikycsh6vzwp1"; depends=[FNN]; }; superdiag = derive2 { name="superdiag"; version="2.0"; sha256="0zfy9ain6agh276av0p66mks3rap42n8yma0dr6qbc14z3nh8w0m"; depends=[coda]; }; superheat = derive2 { name="superheat"; version="0.1.0"; sha256="01v8s6px1k5fajlm6py3ksr1i853kwwlky1yryzhy3p1cxhwgg83"; depends=[dplyr ggdendro ggplot2 gtable magrittr plyr scales]; }; superml = derive2 { name="superml"; version="0.5.6"; sha256="159a80v9a1z2xq0xriqaa5xb7r5slww899vhng5l73c14615jzqw"; depends=[assertthat BH data_table Metrics R6 Rcpp RcppArmadillo]; }; - supernova = derive2 { name="supernova"; version="2.5.7"; sha256="167q33ad0rqzccnlir96692kzsw1n07msgpy9w8939yaiv6div5g"; depends=[backports cli ggplot2 lifecycle magrittr pillar purrr rlang stringr tibble vctrs]; }; + supernova = derive2 { name="supernova"; version="2.5.8"; sha256="0cahgyn9z5nkr21a83j6vps39qp5vas78c0w6ybsp6hs4l3nqhjf"; depends=[backports cli ggplot2 lifecycle magrittr pillar purrr rlang stringr tibble vctrs]; }; superpc = derive2 { name="superpc"; version="1.12"; sha256="0n68qafsww00q0wx37ms3rimrlhbp085ywvv2k5vw951j4z8ivfb"; depends=[survival]; }; supervisedPRIM = derive2 { name="supervisedPRIM"; version="2.0.0"; sha256="1j5gsy119pvrhkkg048lyk6hjvn9x1bhmfy5g824gj3k1w5slrib"; depends=[prim]; }; suppdata = derive2 { name="suppdata"; version="1.1-9"; sha256="0h8yl68x61r8dwz6jdx0mss9n2d6nxcxhacbmfkjfmxlyb7rsgd6"; depends=[httr jsonlite rcrossref xml2]; }; support_BWS = derive2 { name="support.BWS"; version="0.4-6"; sha256="0l47a4llraybpfghw8zhb51rs7c0wnlprpmjhc6jb2nclygzc704"; depends=[]; }; support_BWS2 = derive2 { name="support.BWS2"; version="0.4-0"; sha256="1zhhgd24r1xsrcf9av8hg7sc5pp165kff44lzzvhh79rl8rzrmyy"; depends=[]; }; support_BWS3 = derive2 { name="support.BWS3"; version="0.2-0"; sha256="012kcvscz7m2is92r71731zc7xnp7pwyx30vivwjazrigp9bq1kl"; depends=[]; }; - support_CEs = derive2 { name="support.CEs"; version="0.6-0"; sha256="0j2gg101vnn1jrc0bajrgj14nl22rdq3hy4h6wimrvzqxj35f42c"; depends=[DoE_base MASS simex]; }; + support_CEs = derive2 { name="support.CEs"; version="0.7-0"; sha256="09snvzvskjhw0l6g1gm5jl7c7idmincmqld1bqhcdinsqiq15h1d"; depends=[DoE_base MASS simex]; }; supportR = derive2 { name="supportR"; version="1.2.0"; sha256="0sk6dnssg8gggdlsvr7dg8cbn67r6fqsqdh6hqvar8204fwn4xcw"; depends=[data_tree dplyr ggplot2 gh googledrive lifecycle magrittr purrr rlang rmarkdown scales stringr tidyr vegan]; }; sur = derive2 { name="sur"; version="1.0.4"; sha256="0rp5pwx3m6nzcy73wzmxpsxp9pc7swj2w5b82m0zdxq5kv9hsjsl"; depends=[learnr]; }; surbayes = derive2 { name="surbayes"; version="0.1.2"; sha256="0n01g84cwq5aj4qafk1zf60ka7s9z3q2gkgzp5xw9dx5lgfh7dgb"; depends=[Matrix Rcpp RcppArmadillo rlist]; }; @@ -18393,13 +18670,14 @@ in with self; { survSens = derive2 { name="survSens"; version="1.1.0"; sha256="08xh0jh99xq8lnw8xskmyan78mbk3n2sbjrfpwz7zwmfx4wbip35"; depends=[ggplot2 interp metR reshape2 survival]; }; survSpearman = derive2 { name="survSpearman"; version="1.0.1"; sha256="1b6nj2ikf931926a47a441icbrfjcadwxxnkc35c9yz8nw1kn1ii"; depends=[]; }; surveil = derive2 { name="surveil"; version="0.2.2"; sha256="1bk048mjnviwrls2s25wqrrm3iwi6qjkjlhnpb0i7wjm9cckzz7j"; depends=[BH dplyr ggdist ggplot2 gridExtra Rcpp RcppEigen RcppParallel rlang rstan rstantools scales StanHeaders tidybayes tidyr]; }; - surveillance = derive2 { name="surveillance"; version="1.21.1"; sha256="1a33n91pp53rdfdr96d9sim00xr3bp6diaiqbc97zvri6ib35j8z"; depends=[MASS Matrix nlme polyCub Rcpp sp spatstat_geom xtable]; }; - survex = derive2 { name="survex"; version="1.1.3"; sha256="1rjq4y1l2f3lyqv6zk4szylnxrpb559p1fq5kycicxv91vvq4f37"; depends=[DALEX ggplot2 kernelshap patchwork pec survival]; }; + surveillance = derive2 { name="surveillance"; version="1.22.1"; sha256="1gmpyfrvbq19x056xcryx21131vg8c7mvrnn4wmaw3mvxifp6zs6"; depends=[MASS Matrix nlme polyCub Rcpp sp spatstat_geom xtable]; }; + survex = derive2 { name="survex"; version="1.2.0"; sha256="09kksjpfikw96njblplgqn33lhfvbpqzsid35cs3wmxhi2xv5fbf"; depends=[DALEX ggplot2 kernelshap patchwork pec survival]; }; survexp_fr = derive2 { name="survexp.fr"; version="1.1"; sha256="0ci65w3w06kwab98q9gb7nb7smq9r25qfibkgfilsg1i5li6p9h5"; depends=[survival WriteXLS]; }; survey = derive2 { name="survey"; version="4.2-1"; sha256="0l7iml53k2blmcgvbvplln08fn2s6da856m5izcvw87v6bhn2g6c"; depends=[lattice Matrix minqa mitools numDeriv survival]; }; surveyCV = derive2 { name="surveyCV"; version="0.2.0"; sha256="183ybmfin4xmpsmssw7hskj1rgwpabpa616bzxlir27kygyrswbz"; depends=[magrittr survey]; }; surveybootstrap = derive2 { name="surveybootstrap"; version="0.0.3"; sha256="1ci6gqs1kiizpmddkw9r5nsq9wqdhha3kxhnn6b28fczrsypilf8"; depends=[dplyr functional plyr purrr Rcpp RcppArmadillo stringr]; }; surveydata = derive2 { name="surveydata"; version="0.2.7"; sha256="0wrp92j50a19is4xvh5s82zkp3rvn46gi2344pxinppfax0kjf2h"; depends=[assertthat dplyr DT ggplot2 magrittr purrr rlang scales tidyr]; }; + surveyexplorer = derive2 { name="surveyexplorer"; version="0.1.0"; sha256="1kgnsz2lg0gf7fahby127i4pcav4cigq9qllmp8sk5x7zyrjgwmk"; depends=[dplyr ggplot2 ggupset gt purrr rlang scales stringr tidyr tidyselect]; }; surveyplanning = derive2 { name="surveyplanning"; version="4.0"; sha256="19ydgcwyvkhknf4qmlw7j25skcj9a4rd6s8j5n7bdqpljl60zync"; depends=[data_table laeken]; }; surveysd = derive2 { name="surveysd"; version="1.3.1"; sha256="16l17ying9xshfn563kp7nn3hdqrg03ny578sgi08b7zfds5yf8b"; depends=[data_table ggplot2 laeken Rcpp]; }; surveyvoi = derive2 { name="surveyvoi"; version="1.0.5"; sha256="1nvyp8cz2x0ld79zgpcs7bdynd6g02iklzy1qgs8nmygwi3drdwy"; depends=[assertthat doParallel dplyr groupdata2 Matrix nloptr plyr PoissonBinomial progress Rcpp RcppAlgos RcppEigen Rsymphony scales sf tibble vegan withr xgboost]; }; @@ -18415,12 +18693,13 @@ in with self; { survivalSL = derive2 { name="survivalSL"; version="0.91"; sha256="036iwx6rr27n9g5fiy3ydm81wcsmyvmz9h6846pgzp65gw0bfi93"; depends=[caret cubature date flexsurv glmnet glmnetUtils hdnom kernlab MASS mosaic mosaicCalc nnet prodlim randomForestSRC reticulate rpart SuperLearner survival survivalmodels timeROC tune]; }; survivalmodels = derive2 { name="survivalmodels"; version="0.1.13"; sha256="0d5bfmvfwf3i1iim5cjrqq5vlja92znpzv1csrk488rb582zaza7"; depends=[Rcpp]; }; survivalsvm = derive2 { name="survivalsvm"; version="0.0.5"; sha256="1b4hrdrqq1z0kfn8vpdwg54388m25df2s6w9i574x3mkxkmkjkga"; depends=[Hmisc kernlab Matrix pracma quadprog survival]; }; - survivoR = derive2 { name="survivoR"; version="2.1.0"; sha256="0sr52ymfvjnijmg04xxf0gd64805nmqpzd1n2jg86ibi9hwhsznl"; depends=[crayon dplyr DT ggplot2 glue lubridate magrittr purrr readr shiny shinycssloaders shinyjs stringr tidyr]; }; + survivoR = derive2 { name="survivoR"; version="2.3.0"; sha256="183g05zm1wlc3k038yzvw0p3ydbypr8qi47nmc49xdkzy836dw35"; depends=[crayon dplyr DT ggplot2 glue lubridate magrittr purrr readr shiny shinycssloaders shinyjs stringr tidyr]; }; survminer = derive2 { name="survminer"; version="0.4.9"; sha256="0byh0wxdbjfwdrzsnqv4xlmnik6lj0vkkzfxy7lssk8dv5zmj7nz"; depends=[broom dplyr ggplot2 ggpubr ggtext gridExtra magrittr maxstat purrr rlang scales survival survMisc tibble tidyr]; }; survmixer = derive2 { name="survmixer"; version="1.3"; sha256="00s06h7nn8li4d2kn4yzlnj3px1wkpvnx5w73y98cvrcwm0ad71g"; depends=[]; }; + survobj = derive2 { name="survobj"; version="1.0"; sha256="191wbkfwdmjlihnyxz66fljzvqsnc2c8jlkhynjn0l9vb4g56z79"; depends=[dplyr ggplot2 survival tidyr]; }; survout = derive2 { name="survout"; version="0.1.0"; sha256="1ypxhdirppr6061zk1is473b8k8yy3m14ij4fa66rczs8gqy5sj2"; depends=[cmprsk dplyr openxlsx survival tibble]; }; survsim = derive2 { name="survsim"; version="1.1.8"; sha256="0gv54bd94a6vdz8li0j409qv7r0h4d681l1p9hj9ilzk7y5bfm70"; depends=[eha statmod]; }; - survstan = derive2 { name="survstan"; version="0.0.4"; sha256="0rwwz52s5ss9l5y7xikdf2d7r86lk0xmx190i6mg1aw8mhxplk2b"; depends=[actuar BH dplyr extraDistr ggplot2 gridExtra MASS purrr Rcpp RcppEigen RcppParallel Rdpack rlang rstan rstantools StanHeaders survival tibble tidyr]; }; + survstan = derive2 { name="survstan"; version="0.0.5"; sha256="1i2h4f14w0i8lrjklv7csjamw1c3xm3pix8gq278ra68kwah634x"; depends=[actuar BH dplyr extraDistr ggplot2 gridExtra MASS purrr Rcpp RcppEigen RcppParallel Rdpack rlang rstan rstantools StanHeaders survival tibble tidyr]; }; susieR = derive2 { name="susieR"; version="0.12.35"; sha256="0fhdc3lkhl4s9h2ng72gypy2z3hgk6566jfhwhsfbddyzd22drpd"; depends=[crayon ggplot2 Matrix matrixStats mixsqp reshape]; }; svDialogs = derive2 { name="svDialogs"; version="1.1.0"; sha256="0z3a5glsi0ab43mdk2yvslxyzg12nbqqqc35jvgzj475mpkbgjif"; depends=[rstudioapi svGUI]; }; svDialogstcltk = derive2 { name="svDialogstcltk"; version="1.0.0"; sha256="03rxw1m1ixisj0z9csmn3xff3rl1wqdvkcl1x7kmx64d0x6jwyfy"; depends=[svDialogs svGUI]; }; @@ -18435,13 +18714,13 @@ in with self; { svUnit = derive2 { name="svUnit"; version="1.0.6"; sha256="08nmlbdrmmz04ira30721l99i74w07w2avdr4pypswf2sq1nqgi6"; depends=[]; }; svWidgets = derive2 { name="svWidgets"; version="0.9-45"; sha256="08cpsy4abypjnv33arsgxk5i0gpdvdzj60wa1b22ca1n7d35mc80"; depends=[svMisc]; }; svars = derive2 { name="svars"; version="1.3.11"; sha256="1y8klpj4b1dcba0d3b3kr29n8ji8pfis7v311ph0bx4j1mwilc9g"; depends=[clue copula DEoptim expm ggplot2 pbapply Rcpp RcppArmadillo reshape2 steadyICA strucchange vars zoo]; }; - svd = derive2 { name="svd"; version="0.5.4.1"; sha256="0awnv5aqyfikfs23cz5p8w8hifvd43gvvcnxgcp8h5m2zlyny3kb"; depends=[]; }; + svd = derive2 { name="svd"; version="0.5.5"; sha256="1ilcz7qjykawrd0r74k51f7xryy6d30dmf7zzpbwga6i99wkj0g2"; depends=[]; }; svenssonm = derive2 { name="svenssonm"; version="0.1.0"; sha256="0pvay9vfrcafaq270pq6glp2b74zdfgldksl13cwdb0wk7qx7731"; depends=[]; }; svgPanZoom = derive2 { name="svgPanZoom"; version="0.3.4"; sha256="1iglgwbyxf5q4716h9ba2cfmxh1qq16zwy54krnawg4580v8ydh2"; depends=[htmlwidgets]; }; svgViewR = derive2 { name="svgViewR"; version="1.4.3"; sha256="0nsm397i1p0z1bbp92k6r12fgkxbgn624wvdwh5r7ydpiam6pvg8"; depends=[Rcpp rjson]; }; - svglite = derive2 { name="svglite"; version="2.1.2"; sha256="0c00djvlnf4qr30srh3xjnx1valqq8grm5ib0q4485z8gphn7hf2"; depends=[cpp11 systemfonts]; }; + svglite = derive2 { name="svglite"; version="2.1.3"; sha256="0m0axxrkiih4wmrp9qh803p4l92fdgrsbxaww38z89widx75da7h"; depends=[cpp11 systemfonts]; }; svgtools = derive2 { name="svgtools"; version="1.1.0"; sha256="1ipwj3qw8c62381b6yf5mazhg2a3ssddijqrq3bac57i8i6m8az1"; depends=[magick rsvg stringr xml2]; }; - svines = derive2 { name="svines"; version="0.1.4"; sha256="1piin3nn0z5k9gilcq4lcqj86dqlfm9xqp87cslwypkfkkhn2aia"; depends=[assertthat BH fGarch Rcpp RcppEigen RcppThread rvinecopulib univariateML wdm]; }; + svines = derive2 { name="svines"; version="0.2.2"; sha256="1afhgfdzbp7h29k3jcvc7fv504w9niwnkpkzyijlppk64l5dbrdy"; depends=[assertthat BH fGarch Rcpp RcppEigen RcppThread rvinecopulib univariateML wdm]; }; svmpath = derive2 { name="svmpath"; version="0.970"; sha256="19b5hfqqsh072l5mbkafm5pjd6qhyj20qd2vq6zl5jjmc45r72w1"; depends=[kernlab]; }; svplots = derive2 { name="svplots"; version="0.1.0"; sha256="0fa3mnsdaz85dy7rr6w454z516simj1zrf08sfbm05rp6jr3c7ws"; depends=[ggplot2]; }; svrep = derive2 { name="svrep"; version="0.6.3"; sha256="1b36d4f7dd5hf1wxmkwpp7sz9sfykf492xakp0v1b3qsby8gcdbc"; depends=[DBI Matrix mvtnorm survey]; }; @@ -18460,7 +18739,7 @@ in with self; { swatches = derive2 { name="swatches"; version="0.5.0"; sha256="1kivscgka8gn44rjj0s5sjan1s04znnyn0nd37a74zaik0hm8zs0"; depends=[colorspace httr pack stringr xml2]; }; swdft = derive2 { name="swdft"; version="1.0.0"; sha256="0529rw8nsl48hwiy741alvrzg5d5q1nhnjshrsfwchm5kdv0igva"; depends=[]; }; swdpwr = derive2 { name="swdpwr"; version="1.9"; sha256="12ynji4qg30gypldmcqrj2m89ip0biqvy525kgi7s38a3ian3fhn"; depends=[spatstat_random]; }; - sweater = derive2 { name="sweater"; version="0.1.7"; sha256="03fq3vbcvbv8fwdp6smxyzb5gj8qp03qf88l99f2na9bax302sr3"; depends=[cli combinat data_table LiblineaR proxy purrr quanteda Rcpp]; }; + sweater = derive2 { name="sweater"; version="0.1.8"; sha256="045cyhdsnrhkcpgpgv7s209wn2pa9plj7pnlmmnfiz7dy67ikkr3"; depends=[cli combinat data_table LiblineaR proxy purrr quanteda Rcpp]; }; sweep = derive2 { name="sweep"; version="0.2.5"; sha256="1h9skkcpygj6y8hw3zawcdhvhjyqrr41fqn8jyf9wyvmhz6n84fb"; depends=[broom dplyr forecast lubridate rlang tibble tidyquant tidyr tidyverse timetk]; }; sweidnumbr = derive2 { name="sweidnumbr"; version="1.4.2"; sha256="0zzjvwd60w9b5ybsb72aqa42sx6al4ymr591j3zryxgpl6rms5rh"; depends=[checkmate lubridate stringr]; }; swephR = derive2 { name="swephR"; version="0.3.1"; sha256="10ra6m8arjpgypj15diailnrkgrvkxl3v0xji7v29ci7n03xa46r"; depends=[Rcpp]; }; @@ -18477,9 +18756,9 @@ in with self; { switchboard = derive2 { name="switchboard"; version="0.1"; sha256="1qh6cfm5h0j17ldljpgj400f2dhcfaa4x1157d46cyfawfdscvc5"; depends=[magrittr]; }; switchcase = derive2 { name="switchcase"; version="0.1.1"; sha256="0h31nzyf7dzalgl65cw0k1fxylbmx78l45r5id2wcqdym23dv9a9"; depends=[]; }; switchr = derive2 { name="switchr"; version="0.14.8"; sha256="1q1rnwm0g5kk5z1szb0f9bvaqgpdnj22lvfnychb7jdhriwmn1zw"; depends=[RCurl RJSONIO]; }; - sylcount = derive2 { name="sylcount"; version="0.2-5"; sha256="0934vic6mdrgpralrfvlv7y83kc1h7df7jm37spapy370mzq50lp"; depends=[]; }; + sylcount = derive2 { name="sylcount"; version="0.2-6"; sha256="046d76qwiszpkwiljnigbnj8cvfp66b0a8c50g9aww8a8p44mb87"; depends=[]; }; syllabifyr = derive2 { name="syllabifyr"; version="0.1.1"; sha256="1z61afxx2bm37hxvv1fl3x7ibhkp3h1ivl3k9prqzsaw4j592vfx"; depends=[dplyr purrr stringr tibble tidyr]; }; - syllogi = derive2 { name="syllogi"; version="1.0.1"; sha256="1d9h61xvx5gjafr2cjk92c3ggvrf4p3wrrfv0kcyrk3qn6xd9d0c"; depends=[]; }; + syllogi = derive2 { name="syllogi"; version="1.0.2"; sha256="0f461qak9naglyfqisc6fbv076v5ncijrv5ja2p37h39dc8i3fxz"; depends=[]; }; sylly = derive2 { name="sylly"; version="0.1-6"; sha256="0f03k9d15fkym14y94jb7rkh228blc76jlm7pk229b44hcbh3mmm"; depends=[]; }; sylly_en = derive2 { name="sylly.en"; version="0.1-3"; sha256="0jw48qin172vv7skcpvcpi9wzgav5l9afzb09hhgcxvivbz6dl93"; depends=[sylly]; }; sym_arma = derive2 { name="sym.arma"; version="1.0"; sha256="13fhmgzd50mwlnz9m6nnn4arr4jdqf5h7dgli5lk08da9wx6cy69"; depends=[]; }; @@ -18487,7 +18766,7 @@ in with self; { symSEM = derive2 { name="symSEM"; version="0.2"; sha256="05km458ffmy9sc93zjvfg0c7qcwb62fh3scllw67rv5919lq5hh9"; depends=[caracas metaSEM OpenMx]; }; symbol_equation_gpt = derive2 { name="symbol.equation.gpt"; version="1.1.3"; sha256="1z7ww9wvyd4ma7bk0ynp2rbkrajd8b3frb1msh8wn2msj5k7pfpg"; depends=[htmltools markdown nextGenShinyApps r2symbols rstudioapi shiny shinyStorePlus]; }; symbolicDA = derive2 { name="symbolicDA"; version="0.7-1"; sha256="1x1qwrf587lgp9ciakrhiy3wj4g90x4g7r784rr2b97g1xwysjff"; depends=[ade4 cluster clusterSim e1071 RSDA shapes XML]; }; - symengine = derive2 { name="symengine"; version="0.2.2"; sha256="1wjw6fbphkxrha859s27rvzjp0niysssicaamw9sm8895j8k5lfk"; depends=[Rcpp]; }; + symengine = derive2 { name="symengine"; version="0.2.4"; sha256="1ms8xxh827nailh8zx9kdbhv8bnzqimwksgnx5nx5mh3sw53wdqh"; depends=[Rcpp]; }; symmetry = derive2 { name="symmetry"; version="0.2.3"; sha256="01sk0v6kh9qi3phl51wk83c5v413ab23qmcqjd3hl2x4hn2rv2z6"; depends=[Rcpp RcppArmadillo Rdpack]; }; symmoments = derive2 { name="symmoments"; version="1.2.1"; sha256="0wl68nsvydfhlbyaj54alj31dphqigyp1s4h2xdapxj4zvwf2sws"; depends=[combinat cubature multipol mvtnorm]; }; symphony = derive2 { name="symphony"; version="0.1.1"; sha256="0bgdhah202sh5mjbzqzk14vkl6xwdxxhri0ik03xh654b4s8hscc"; depends=[class data_table dplyr ggplot2 harmony irlba magrittr Matrix purrr RANN RColorBrewer Rcpp RcppArmadillo rlang tibble tidyr uwot]; }; @@ -18500,7 +18779,7 @@ in with self; { syntaxr = derive2 { name="syntaxr"; version="0.8.0"; sha256="1iik9b3x9jx7w31j7hyi3sixg30l5a6w40svhqj1xlchsk60yykn"; depends=[magrittr]; }; syntenyPlotteR = derive2 { name="syntenyPlotteR"; version="1.0.0"; sha256="00w380hcw7zfsr4lgzlp57l7rcl280n3y5m8xsp7n2f5csf8kq5q"; depends=[ggplot2 stringr]; }; synthACS = derive2 { name="synthACS"; version="1.7.1"; sha256="1s4jawg2g0zy41y0ajacki4nif9m3r0hnaz63yhapcnizc37lyy1"; depends=[acs data_table Rcpp retry]; }; - synthesis = derive2 { name="synthesis"; version="1.2.3"; sha256="0nhnpqhs1h7iz49h852ns8pgmcl8via506idyp19dp778wbmxkn1"; depends=[MASS]; }; + synthesis = derive2 { name="synthesis"; version="1.2.4"; sha256="1yb0z4klz4hd7ab83j3h4x8v2yp2glmnnvz64g76iclx5mcgl6az"; depends=[MASS]; }; synthesisr = derive2 { name="synthesisr"; version="0.3.0"; sha256="0b50d5hfkscggn2f6h8wyljkar08r8cbc0a4l12f809w5hdnjc63"; depends=[stringdist]; }; synthpop = derive2 { name="synthpop"; version="1.8-0"; sha256="0ljq3vhprzxj0p5s57pr223n3mxbiwz0p5bdvjcdkw4xykx7zkka"; depends=[broman classInt foreign ggplot2 lattice MASS mipfp nnet party plyr polspline proto randomForest ranger rmutil rpart stringr survival]; }; sys = derive2 { name="sys"; version="3.4.2"; sha256="1cz57jkc159zfgffvcdb40wv9avb5id7pdvgx8q1hs7vy1kcxgdp"; depends=[]; }; @@ -18509,10 +18788,11 @@ in with self; { syslognet = derive2 { name="syslognet"; version="0.1.2.1"; sha256="0nwni2mn7w43pfasqa2dwy1l6r0ymlkwlsyd5q47fajdr8v1ir0q"; depends=[]; }; systemfit = derive2 { name="systemfit"; version="1.1-30"; sha256="1qhw8gda85lliqhj67zsgva4cb6wihr5hks1c9c34y0n3ywgp52r"; depends=[car lmtest MASS Matrix sandwich]; }; systemfonts = derive2 { name="systemfonts"; version="1.0.5"; sha256="08sqw5izpwhawcjkcyscvslz914skwfi0s68rdwrqwwkh8fzn3w4"; depends=[cpp11]; }; - syt = derive2 { name="syt"; version="0.2.0"; sha256="1pfl3d6laa075z88fqgjnrsn21lgjsak0bjdws09b9knc0ifgfsz"; depends=[Matrix partitions]; }; + syt = derive2 { name="syt"; version="0.3.0"; sha256="19vjqkk0ji35zm3xqrjmlahjawnxapmsh0d6v9klb6h05aamd0gg"; depends=[Matrix partitions]; }; syuzhet = derive2 { name="syuzhet"; version="1.0.7"; sha256="0cpjg16hwn6843jdxp4h94qjw1wwwblvjzg30w54rac08m62nkxg"; depends=[dplyr dtt NLP rlang textshape tidyr zoo]; }; tLagInterim = derive2 { name="tLagInterim"; version="1.0"; sha256="17fz38bc4r7m3racscr9yn1s8vmzlkkc14144bb3x4sg40ybyfpx"; depends=[R_utils survival]; }; - tLagPropOdds = derive2 { name="tLagPropOdds"; version="1.8"; sha256="08ik62hlnbzb5xn159lfs85dwz69w4jnnk9mbc75mxryzw10p6jd"; depends=[dplyr R_utils survival]; }; + tLagPropOdds = derive2 { name="tLagPropOdds"; version="1.9"; sha256="0bygx77s28izfwdyk6gihcyanch55cha7x52h29kxxp1kaapyf11"; depends=[dplyr R_utils survival]; }; + tRigon = derive2 { name="tRigon"; version="0.3.2"; sha256="1qnvg06dgny2q4lfsbnjn5c664ibm332mr8rfwv5lzgr56d44nnk"; depends=[boot caret data_table dplyr DT factoextra ggcorrplot ggplot2 ggpubr ggridges markdown patchwork randomForest RColorBrewer readxl sessioninfo shiny shinydashboard shinydashboardPlus shinyWidgets simpleboot writexl]; }; tRnslate = derive2 { name="tRnslate"; version="0.0.3"; sha256="0sm0cqxylsxmnhqs1c8w81d6q2sj7nmm86mds59kiyspy9m67sbc"; depends=[]; }; tTOlr = derive2 { name="tTOlr"; version="0.2.3"; sha256="0pqaj80bvpccw6g8kvvlc4bkkzrrh0nvl4gbfz7b582lzd41xjyn"; depends=[lattice latticeExtra]; }; tab = derive2 { name="tab"; version="5.1.1"; sha256="1kg8c1safi9klkx2mdkmsf5dn9piy4jljwd4ma7g4jz2rwl4jzhv"; depends=[dplyr kableExtra knitr MASS survey]; }; @@ -18526,7 +18806,7 @@ in with self; { tableExtra = derive2 { name="tableExtra"; version="1.0.1"; sha256="1rbcxd3rjhvcpayj6d7mh30vkbc7g4mv4qa7552xz3x1wny0n4mm"; depends=[gtable]; }; tableHTML = derive2 { name="tableHTML"; version="2.1.2"; sha256="0x86q0nddkyan9yh2jaldrnc30q1n3q0fnza2fnavzbz5c2hxapw"; depends=[htmltools jpeg magrittr png shiny webshot]; }; tableMatrix = derive2 { name="tableMatrix"; version="0.82.0"; sha256="1sskijhbqakamrk2rv7v5zpjsdi8jw0jl2z96l0vhsvsiq0cz1c8"; depends=[data_table]; }; - tablecompare = derive2 { name="tablecompare"; version="0.1.0"; sha256="0cf557yi0h2y4idk8qwv0gk468pn0fhyndiy2jx28gdsz33h5p3a"; depends=[data_table glue magrittr purrr rlang tidyselect]; }; + tablecompare = derive2 { name="tablecompare"; version="0.1.1"; sha256="1n5qykpsn43w9x030ymspryx69k5wd3vlkw471wxpf3cqkxqbkdg"; depends=[data_table glue magrittr purrr rlang tidyselect]; }; tabledown = derive2 { name="tabledown"; version="0.0.3"; sha256="0pvd9i7ycsarsp7m9hdss86vx0mdrv57iqxk8nyqixfdvrwb48pv"; depends=[data_table dplyr ggplot2 lavaan magrittr mirt MOTE psych tibble tidyselect]; }; tableeasy = derive2 { name="tableeasy"; version="1.1.2"; sha256="1aa3af245w1frj94j0qynyjv5pvvajas2fmdnyyiknrnrghcn7n2"; depends=[lmtest mgcv nortest survival tableone]; }; tableone = derive2 { name="tableone"; version="0.13.2"; sha256="1br78y68037g5v5jhgi9l393kj2msamdklim8ki40hmxk9bibkxi"; depends=[e1071 gmodels labelled MASS nlme survey zoo]; }; @@ -18536,14 +18816,14 @@ in with self; { tablesgg = derive2 { name="tablesgg"; version="0.8-1"; sha256="0vkl9386qnalr5d0libqs2ihszggs0qyx6ffyjn8j8ab3kczzxhr"; depends=[ggplot2 tables]; }; tablet = derive2 { name="tablet"; version="0.6.3"; sha256="16wwwwcwwc18imv1zjvw5dvdaqqgscsp4z2xgvdqaa6ljx1l5snj"; depends=[dplyr fs kableExtra magrittr reactable rlang spork tidyr yamlet]; }; tablexlsx = derive2 { name="tablexlsx"; version="0.1.0"; sha256="0rispm626s59g3irdkx8clmjlqsg1vdlyjkzx0z74m13nkgmfw82"; depends=[dplyr magrittr openxlsx]; }; - tabnet = derive2 { name="tabnet"; version="0.4.0"; sha256="1wxarcl68s4v88b1x2qw4vc4ybm66zm10qcinwk892n3srs7isfc"; depends=[coro glue hardhat magrittr progress rlang tibble torch vctrs]; }; + tabnet = derive2 { name="tabnet"; version="0.5.0"; sha256="1myw6qx2h7szp6p0d5y4vy9mw5nsxmj64ybshp2q22whlbiqad7k"; depends=[coro dplyr hardhat magrittr progress rlang tibble tidyr torch vctrs zeallot]; }; taboolaR = derive2 { name="taboolaR"; version="0.1.0"; sha256="1nv189d6sjjrhc1nr7xhdf22gfh1z93rlcgm2vk7kcs43avm8fwb"; depends=[jsonlite]; }; tabr = derive2 { name="tabr"; version="0.4.9"; sha256="0dsm98lhl7j2bb3z5cliz1f34sv904svhniw6iar1nqh6p9y8a5l"; depends=[crayon dplyr ggplot2 purrr tibble tidyr]; }; tabshiftr = derive2 { name="tabshiftr"; version="0.4.1"; sha256="1ri28zxsxn9bkbq0f47q6mkr889krvixvk63in0jbn9hya77gdy8"; depends=[checkmate crayon dplyr magrittr purrr rlang stringr testthat tibble tidyr tidyselect]; }; tabuSearch = derive2 { name="tabuSearch"; version="1.1.1"; sha256="0396a8hla508na1hmyyhfbl8w10dbg810cln2xyhhvxi7rr223dj"; depends=[]; }; - tabula = derive2 { name="tabula"; version="3.0.0"; sha256="1jdm37p1sc55xb3ha7rha65wv1jnfg29xxgpcfa4yikpfby1m834"; depends=[arkhe]; }; + tabula = derive2 { name="tabula"; version="3.0.1"; sha256="0w26lp0if0lxkr8hrlw57jf5cwqji4q8yqaay6fasy08z4j9lvhf"; depends=[arkhe]; }; tabularMLC = derive2 { name="tabularMLC"; version="0.0.3"; sha256="1gppzbf780ci4vrvy7rd3xa0bvwxca5f05a9xk194xv913vyd440"; depends=[Rcpp RcppArmadillo]; }; - tabularaster = derive2 { name="tabularaster"; version="0.7.1"; sha256="0b8jl3bf7q0302mlnqh720qs7rllkgyg127n1h25snb34k1wc3pm"; depends=[dplyr fasterize magrittr raster silicate spatstat_geom tibble]; }; + tabularaster = derive2 { name="tabularaster"; version="0.7.2"; sha256="1v64cdh098nmlaj8g3dbyssxrwizaqhabsb7djvz60g2x3z2d20k"; depends=[dplyr fasterize magrittr raster silicate spatstat_geom tibble]; }; tabularmaps = derive2 { name="tabularmaps"; version="0.1.0"; sha256="07i76n2fpl2ma6jl3zdbay0zmmaaxrxhv1368xm2d575br42nri4"; depends=[ggforce ggplot2 purrr rlang]; }; tabulate = derive2 { name="tabulate"; version="0.1.0"; sha256="1x5rf8shd3jxa7k8p8ak5a6c2fmxv476is5vlrg1fsg6f964h01v"; depends=[cli magrittr Rcpp rlang]; }; tabulator = derive2 { name="tabulator"; version="1.0.0"; sha256="1dylmw5prwir3qj13lxkvlzq6j7r23y3gz1g0bjyanb0xmzgxn4k"; depends=[assertthat data_table dplyr magrittr purrr rlang stringr tibble tidyr]; }; @@ -18559,20 +18839,20 @@ in with self; { taipan = derive2 { name="taipan"; version="0.1.2"; sha256="192sy5pgq74vs31p7jfn6svdzf9mk9ybppzhp1rlki1bagmm5f1r"; depends=[shiny]; }; takos = derive2 { name="takos"; version="0.2.0"; sha256="09w9lkqhxdb26fvrsb8n16601kqpr2smplipx3lj6cdgbyhb1hqz"; depends=[baseline broom colorRamps data_table deSolve devEMF MASS minpack_lm pracma segmented sfsmisc smoother]; }; tame = derive2 { name="tame"; version="0.0.1"; sha256="183s8mxy1wvqkwick5gzrf5ijx8frwk2b8bpb4hh5rwvlqwm6p4h"; depends=[dplyr fuzzyjoin magrittr purrr Rcpp Rfast rlang stringr tibble tidyr tidyselect]; }; - tanaka = derive2 { name="tanaka"; version="0.3.0"; sha256="0lbwqz6p7kmxadjymqpfmcvz4l6gzimbk94778w4vzh9iay7dqi7"; depends=[mapiso sf terra]; }; + tanaka = derive2 { name="tanaka"; version="0.4.0"; sha256="086xjcl8fsbsk3b0qjn8vx0w5rc5jg30hk9x93zc2mq8d984kh7r"; depends=[mapiso maplegend sf terra]; }; tangram = derive2 { name="tangram"; version="0.8.2"; sha256="1r4wvz3nrms3mh06a7zykhkbsi4hz57xdn7af49yiypynhrxiin5"; depends=[base64enc digest htmltools knitr magrittr R6 stringi stringr]; }; tangram_pipe = derive2 { name="tangram.pipe"; version="1.1.2"; sha256="0v86xn5rvr6c74cqhiwfxgfb4mizqlf5bqc51870na28i2ariaap"; depends=[dplyr]; }; tapkee = derive2 { name="tapkee"; version="1.2"; sha256="1xgz2cv5jb1hdnl8y8zs4x6p1dk1vv8zbs4wfsj61gpfyf9gkh4f"; depends=[]; }; tapnet = derive2 { name="tapnet"; version="0.3"; sha256="1fjg98m19iwbzijs5b5l4ssrbx1shv1hmgn1166cbni9y76m44sh"; depends=[ape bipartite MPSEM phytools vegan]; }; - tarchetypes = derive2 { name="tarchetypes"; version="0.7.9"; sha256="1889jca7zwav1wwig1a4jr1dxmbcszfriqmhdyg97m2s1c9j0r9p"; depends=[digest dplyr fs rlang targets tibble tidyselect vctrs withr]; }; + tarchetypes = derive2 { name="tarchetypes"; version="0.7.11"; sha256="1iqrz27n8ndazx97ngqbz5yz5ppyimpbxam30zgdwnnzf963s5ym"; depends=[digest dplyr fs rlang targets tibble tidyselect vctrs withr]; }; tardis = derive2 { name="tardis"; version="0.1.4"; sha256="1hfqnszhly6cfi7aii3v9nnrj3md389bflvf3igixrn4wb7mfyi5"; depends=[cpp11 dplyr magrittr purrr rlang stringi stringr tidyr]; }; - targeted = derive2 { name="targeted"; version="0.3"; sha256="0h05h8pgjjab5clv501m9b2fcycspj0dc7zs72lwp15al2rikmzg"; depends=[data_table digest futile_logger future_apply lava mets optimx progressr R6 Rcpp RcppArmadillo survival]; }; - targets = derive2 { name="targets"; version="1.3.2"; sha256="0zlbq658zxflz2fk9pksbjx3r5dmay4411byl33gkp3rnynvchgh"; depends=[base64url callr cli codetools data_table digest igraph knitr R6 rlang tibble tidyselect vctrs yaml]; }; + targeted = derive2 { name="targeted"; version="0.4"; sha256="08js8l51j03w2zy7fnm3wq9dcy9r2f0j6wcr9cxl2qh8sx8n9j78"; depends=[data_table digest futile_logger future_apply lava mets optimx progressr R6 Rcpp RcppArmadillo survival]; }; + targets = derive2 { name="targets"; version="1.4.1"; sha256="0kax8nj66jbcp8sbv7zl68hzf4clz5m50fibrcypnzvpamhafw1q"; depends=[base64url callr cli codetools data_table digest igraph knitr R6 rlang tibble tidyselect vctrs yaml]; }; tashu = derive2 { name="tashu"; version="0.1.1"; sha256="0rirjalridr79a7j3qz80l2vp6m8paqr97ac241b58756k7nr5j7"; depends=[dplyr drat ggplot2 lubridate plyr randomForest RColorBrewer reshape2]; }; tastypie = derive2 { name="tastypie"; version="0.1.1"; sha256="0a7wq8jg3f0852y9pla1f63dqnkwn3vnb9p7fh9jq9rf75ljcpjk"; depends=[dplyr fmsb ggplot2 packcircles RColorBrewer scales shadowtext tibble]; }; tatest = derive2 { name="tatest"; version="1.0"; sha256="1yd9pdpdhxwpllnj5wxa7ly29qiw8qywx9lx0w3nizczlx35fgjy"; depends=[]; }; tatoo = derive2 { name="tatoo"; version="1.1.2"; sha256="0lvnl2lqp16af4rkmijl47bx5xf17gpji21s0h8xxzpbxbmy3xwx"; depends=[assertthat colt crayon data_table magrittr openxlsx stringi withr]; }; - tau = derive2 { name="tau"; version="0.0-24"; sha256="1q8pd7m6rd0899c44plxns5yydifhsccyb51glgw07ni5v4rz3gh"; depends=[]; }; + tau = derive2 { name="tau"; version="0.0-25"; sha256="144fpmxzwr7jn8l6mpma2w835y89vwih476vxkh7jx4m6fkd88pz"; depends=[]; }; tauProcess = derive2 { name="tauProcess"; version="2.1.3"; sha256="0mqvq9bickv6jwfxcqgy3cxr3km6xg1mscgg480wd5fv0v2y4z51"; depends=[survival]; }; tauturri = derive2 { name="tauturri"; version="0.3.0"; sha256="014301f5mzy6vblqzb61bxjv46kdynmmrxjpxyvk01w1k8wkwfcn"; depends=[httr magrittr plyr purrr tibble]; }; taxa = derive2 { name="taxa"; version="0.4.2"; sha256="1vb3igz24xkgsds5145h3hqlc7grn3l2kpslg87j4hsw66i86py3"; depends=[cli crayon dplyr magrittr pillar rlang stringr tibble vctrs viridisLite]; }; @@ -18582,10 +18862,10 @@ in with self; { taxizedb = derive2 { name="taxizedb"; version="0.3.1"; sha256="157xpbmqp3l0blf6n7cb0qswj12v39rhvx0zkbrc2w73g601naj5"; depends=[curl DBI dbplyr dplyr hoardr magrittr readr rlang RSQLite tibble]; }; taxlist = derive2 { name="taxlist"; version="0.2.4"; sha256="144nsiz90nkrm2v4nnhpvdnzpvjg2jh88dkqrm4gjm0drl9s981g"; depends=[biblio foreign stringdist stringi stringr vegdata]; }; taxonbridge = derive2 { name="taxonbridge"; version="1.2.2"; sha256="1ivks3bvwyn0ybvyz6dhsx7qxnlskf4icjkgsichdv4p24w5iwb9"; depends=[dplyr ggplot2 purrr rje stringr vroom withr]; }; - taxonomizr = derive2 { name="taxonomizr"; version="0.10.2"; sha256="1d652945njl8s5q161bbp6yp8a2lylhwsyiqziw1gn58q4152y3n"; depends=[curl data_table R_utils RSQLite]; }; + taxonomizr = derive2 { name="taxonomizr"; version="0.10.6"; sha256="1g4r42zc9h6f0x875b0nyg56frzn4q7k5vk1jkwczz6ic5cbwigj"; depends=[curl data_table R_utils RSQLite]; }; taxotools = derive2 { name="taxotools"; version="0.0.132"; sha256="0f24356bmvbm6p18zw9vsyz0zqyijq8757c83mv14mkbqs2apqip"; depends=[plyr rmarkdown sqldf stringdist stringi stringr taxize wikitaxa]; }; tayloRswift = derive2 { name="tayloRswift"; version="0.1.0"; sha256="1gr179hzqxih49v214dqawfhsbsahhyj1lbj77vqv00zq1siigpl"; depends=[]; }; - taylor = derive2 { name="taylor"; version="2.0.1"; sha256="0vav10v4lprdpa1c3y360gdnwxh491q85lc215plqq5hvzm7sr81"; depends=[crayon ggplot2 glue lifecycle rlang scales tibble vctrs]; }; + taylor = derive2 { name="taylor"; version="3.0.0"; sha256="0qxy0kvqylpy3bcp2va4c3453x160zf8kaw34jydg78mibmjlghr"; depends=[crayon ggplot2 glue lifecycle rlang scales tibble vctrs]; }; tbd = derive2 { name="tbd"; version="0.1.0"; sha256="1wmfy3p82gckhfsslxzapryfygmircii7x24j6ysfyx52gy8iwf5"; depends=[numDeriv]; }; tbl2xts = derive2 { name="tbl2xts"; version="1.0.4"; sha256="1h54yhwbmlzgii202dcrz336d790374p213f1ba6rlm5syad88v9"; depends=[dplyr rlang tibble xts zoo]; }; tbm = derive2 { name="tbm"; version="0.3-5"; sha256="0qq6zjz37j31jrw0lxsf6vgxwhs8swkqg48jwc320vpz1qjqj7xv"; depends=[basefun coneproj mboost mlt sandwich variables]; }; @@ -18597,29 +18877,29 @@ in with self; { tci = derive2 { name="tci"; version="0.2.0"; sha256="15drq6rvakf8jxmb1g5d7jjl7vnbzg314d809zzq19bicivvxsqj"; depends=[ggplot2 gridExtra knitr mvtnorm Rcpp RcppArmadillo reshape reshape2 truncnorm xtable]; }; tcl = derive2 { name="tcl"; version="0.2.0"; sha256="0n735xyl0fr3zgigw68xpy1ky3rfd2djwg9qhgbgif0cvgrrki1n"; depends=[eRm lattice ltm MASS Matrix numDeriv psychotools rlang]; }; tcltk2 = derive2 { name="tcltk2"; version="1.2-11"; sha256="1ibxld379600xx7kiqq3fck083s8psry12859980218rnzikl65d"; depends=[]; }; - tclust = derive2 { name="tclust"; version="1.5-4"; sha256="1a3i6kvfzc2d6rdf75w03n5172jihhqa8mvzcb4m8l0w6mgdlm9b"; depends=[]; }; + tclust = derive2 { name="tclust"; version="1.5-5"; sha256="15jl1srsn0m0r5qafbkqsvnh44j30nh3yhipw030mdfa4qkbz3gw"; depends=[]; }; tcpl = derive2 { name="tcpl"; version="3.1.0"; sha256="0s35j9ky49d2f58hg93a47l6j855vm95a3qzwq3i8wd0p2zh1x7b"; depends=[data_table DBI dplyr ggplot2 gridExtra numDeriv plotly RColorBrewer RMariaDB sqldf stringr tcplfit2 tidyr]; }; tcplfit2 = derive2 { name="tcplfit2"; version="0.1.6"; sha256="1znhma87nyy36m3viyh80m6gygqh4iwwh1xj0nw6wh88qal4935p"; depends=[numDeriv RColorBrewer stringr]; }; td = derive2 { name="td"; version="0.0.6"; sha256="1zycwnl7n03jw76n8qrk2zhgnakj6npid25pflj6dnmbjc47ih32"; depends=[RcppSimdJson]; }; - tdROC = derive2 { name="tdROC"; version="1.0"; sha256="137j1m9pysjcz1gsfcym0438by3c7na21ccjlqf7xfccr1y8k2k6"; depends=[survival]; }; - tdata = derive2 { name="tdata"; version="0.2.2.0"; sha256="03p068gsjnf0m6i1bf5dnck9qq6igqig24hn7ahlrkd426f3mj8z"; depends=[BH Rcpp readxl]; }; + tdROC = derive2 { name="tdROC"; version="2.0"; sha256="0m53a9w2365mb1bq9wlj7gwsabnbh9m4ax8klq22frj2dzvlk7xm"; depends=[magrittr Rcpp survival]; }; + tdata = derive2 { name="tdata"; version="0.3.0"; sha256="1plgqd4pllj06rc3cvyaqs0c23r3c688fg5h8fzfkbhrrxfpwdn8"; depends=[BH Rcpp]; }; tdaunif = derive2 { name="tdaunif"; version="0.1.1"; sha256="03m8lzg4w1ys0shr2gir5m78c02r71l5pwqgvpcn004kirh3xhwv"; depends=[]; }; tdcmStan = derive2 { name="tdcmStan"; version="2.0.0"; sha256="0xa80r37abc9fzf9zcf0zpimadwa3glhw3qbn7wbg0cq93cm04df"; depends=[dplyr glue magrittr rlang stringr tibble tidyr tidyselect]; }; tdigest = derive2 { name="tdigest"; version="0.4.1"; sha256="1g4yk01lmx8cz5q06bxm3kcsi7c9cvpdfi925csc4qaf5rdrad4y"; depends=[magrittr]; }; tdr = derive2 { name="tdr"; version="0.13"; sha256="0i0hnb3fc4d1mbbxcpzmyfh1w2rahfjabg5iyxym3yjd6377al15"; depends=[ggplot2 lattice RColorBrewer]; }; tdsa = derive2 { name="tdsa"; version="1.1-0"; sha256="0zp0g2jcpl26vszbw3s5v6qc6l8jk2jll0nz0f3gywhiv93mjmgr"; depends=[deSolve mathjaxr numDeriv]; }; tdsc = derive2 { name="tdsc"; version="1.0.4"; sha256="1mblw1x9b3pwf0yx3vzminsqkgbqajafbwl3mw014lbdcy9qc3bi"; depends=[data_table moments]; }; - tdthap = derive2 { name="tdthap"; version="1.2"; sha256="0x67k50vly92b9n5hpqp4hy87kh8r6nzadsj8xzz4lvcmb4vb6mq"; depends=[]; }; + tdthap = derive2 { name="tdthap"; version="1.3"; sha256="05yj7jwwd0q2yk8gpp44fhh3sknvw3g6p9glj6z6rz46p9xf31kr"; depends=[]; }; tea = derive2 { name="tea"; version="1.1"; sha256="0ql7lrxk0ihm49kqsvz79ig8i54rwiy9nxav4v9hy72j9kj5bgjn"; depends=[Matrix]; }; teachingApps = derive2 { name="teachingApps"; version="1.0.8"; sha256="161l9nvgi22ihp3l87x4alk22m9451h45n7s3ic60y26sr3zlv3k"; depends=[actuar BH data_table devtools dplyr DT ggplot2 knitr magrittr markdown miniUI pacman Rcpp RcppEigen RcppNumerical rprojroot scales shiny shinydashboard shinythemes yaml]; }; teal_code = derive2 { name="teal.code"; version="0.4.1"; sha256="1drwxgiigx20db4blzixljknafr651qs0fk5cmcal1xsl1k7hcwp"; depends=[checkmate lifecycle rlang shiny styler]; }; teal_logger = derive2 { name="teal.logger"; version="0.1.3"; sha256="037l3sb0vbnijhl1an4d4f63kgjq77nrj0hfrn74yj9ml406g3wg"; depends=[glue lifecycle logger shiny withr]; }; teal_reporter = derive2 { name="teal.reporter"; version="0.2.1"; sha256="0jwc5vrlgxkbahcr4rww1l12cbkrrdda4xrcx6p6lwxbx2m847jg"; depends=[bslib checkmate htmltools knitr lifecycle R6 rmarkdown shiny shinyWidgets yaml zip]; }; - teal_widgets = derive2 { name="teal.widgets"; version="0.4.1"; sha256="06qbwy3bwfl1x2lqggzqjz4skb0n11vnvgyl7pr8pvwv97zlalpr"; depends=[bslib checkmate ggplot2 htmltools lifecycle rtables shiny shinyjs shinyWidgets styler]; }; + teal_widgets = derive2 { name="teal.widgets"; version="0.4.2"; sha256="0qdjc1w1kh0k155vp0w0rs5yh26lmds9i6xv4dhrgnn7h2gaqgv1"; depends=[bslib checkmate ggplot2 htmltools lifecycle rtables shiny shinyjs shinyWidgets styler]; }; tealeaves = derive2 { name="tealeaves"; version="1.0.6"; sha256="0gfga3fx047kpngwrkinsq3w5f34svnh3vpfjnc78bvrmmm70wqw"; depends=[checkmate crayon dplyr furrr future glue magrittr purrr rlang stringr units]; }; teamcolors = derive2 { name="teamcolors"; version="0.0.4"; sha256="0mqrjnkpxzv7armgbl9nwz42pjb9l94yml5lp41rhjj9414b2729"; depends=[dplyr ggplot2 tibble tidyr]; }; teamr = derive2 { name="teamr"; version="0.0.1"; sha256="01gngws8lf093598wlzrv4ls74avsli6ij33v1plqgc0znyaw4s2"; depends=[httr jsonlite R6]; }; - tectonicr = derive2 { name="tectonicr"; version="0.2.93"; sha256="0a5lxjk4ghjxyhmprh3ay8922dzp59affnkppl2s7zfbz5cnmxz0"; depends=[boot dplyr ggplot2 RColorBrewer sf smoothr spatstat_explore terra tidyr viridis zoo]; }; + tectonicr = derive2 { name="tectonicr"; version="0.2.95"; sha256="0ywq3iq6p4gfrdrmhh4fxw4gkw2ff1h55zlad6c579yc138yq5an"; depends=[boot dplyr ggplot2 RColorBrewer sf smoothr spatstat_explore spatstat_geom spatstat_utils terra tidyr viridis zoo]; }; teda = derive2 { name="teda"; version="0.1.1"; sha256="0yx469jbkw9cgx73zi5mkykrdn16kn01zh524x9411314aa32avx"; depends=[]; }; tehtuner = derive2 { name="tehtuner"; version="0.3.0"; sha256="1m1gkkl0kgjrlkbh3vz8lh64gq6l8v3vay0977lwx8g3yzs40z0g"; depends=[earth foreach glmnet party randomForestSRC Rdpack rpart stringr SuperLearner]; }; teigen = derive2 { name="teigen"; version="2.2.2"; sha256="1k5k3lj6av5pyx130w1j7avd0jdmm12ryc71mi5mq49sp95ndl4v"; depends=[]; }; @@ -18636,12 +18916,12 @@ in with self; { templr = derive2 { name="templr"; version="0.2-0"; sha256="1s2awbcf3vaalbrwz5ryfiz69vhapy9h6jhy6zgzqqs5l1aw4ad0"; depends=[jsonlite remotes xml2]; }; tenispolaR = derive2 { name="tenispolaR"; version="0.1.4"; sha256="0xpp1hi3xnkg55aixgy2bp5476i503h8gsiss9x7f15274kx0d7s"; depends=[stringr]; }; tensor = derive2 { name="tensor"; version="1.5"; sha256="19mfsgr6vz4lgwidm80i4yw0y1dr3n8i6qz7g4n2xa0k74zc5pp1"; depends=[]; }; - tensorA = derive2 { name="tensorA"; version="0.36.2"; sha256="19wwh654qlja4z1n7afjpzsrrm53p8ddysa2vra5mdnkddb4g2cf"; depends=[]; }; + tensorA = derive2 { name="tensorA"; version="0.36.2.1"; sha256="1dvxc4d5c8k3mqkx6bjgfmnb98rrdd1rsazyva76mzvxzrhq4n06"; depends=[]; }; tensorBF = derive2 { name="tensorBF"; version="1.0.2"; sha256="1dw1a6xqcsl4isbzbfiplgqq5nak5n9ffzm23mzzmkh1r1a8kl1y"; depends=[tensor]; }; tensorBSS = derive2 { name="tensorBSS"; version="0.3.8"; sha256="1chgkdshjpxzy0cxkgjzpr5k4v2hyad1vchrxyqhsj9isfic2581"; depends=[abind fICA ggplot2 ICtest JADE Rcpp RcppArmadillo tensor tsBSS]; }; + tensorEVD = derive2 { name="tensorEVD"; version="0.1.0"; sha256="0jh32siw83czgn5k330c8srmn5pa2jwsyi2nrn3vpl10n607xay2"; depends=[]; }; tensorTS = derive2 { name="tensorTS"; version="1.0.1"; sha256="0qn6h3icgcg7ipyjk0cc9pbc97d58m56f1w8ijydms42r2xcnipg"; depends=[abind expm MASS Matrix pracma rTensor tensor]; }; tensorflow = derive2 { name="tensorflow"; version="2.14.0"; sha256="1zv7b3r8c2nzyrq295pvdf3kv2mz7cmm4adck508qr12rb9d5ybx"; depends=[config lifecycle processx reticulate rstudioapi tfautograph tfruns yaml]; }; - tensorr = derive2 { name="tensorr"; version="0.1.1"; sha256="18xdvp328h96jn8y1iayxh7cyz2s8j5nn43nq18pyaxq271hkfyh"; depends=[assertive_base assertive_properties assertive_types Matrix purrr]; }; tensorregress = derive2 { name="tensorregress"; version="5.1"; sha256="13khpymifjd8bsqb5j43kaqbpampzifp0lzmh4m3hi17jhcg33aq"; depends=[MASS pracma]; }; tensorsparse = derive2 { name="tensorsparse"; version="3.0"; sha256="0xx003nh5bi87cbsqb7ikpcs4yhjhphh7pybzzas44qkwbn4fn1k"; depends=[]; }; tensr = derive2 { name="tensr"; version="1.0.1"; sha256="1z6b3ra7fgn88mxbhsq65x3frj5j7p17n119s9kbw7sg9y633vfx"; depends=[assertthat]; }; @@ -18649,14 +18929,16 @@ in with self; { tergmLite = derive2 { name="tergmLite"; version="2.6.1"; sha256="03dr3bfi5ywavfijkc6gmci8i1kmbsh26awhl7748mn9wcsgs2pc"; depends=[ergm network networkDynamic Rcpp statnet_common tergm tibble]; }; term = derive2 { name="term"; version="0.3.5"; sha256="1ig1hvyv18d1x19jmvkg66m6nn8kdlffj5hx70vzd4sxz68j2k0v"; depends=[chk extras lifecycle purrr rlang universals vctrs]; }; terminaldigits = derive2 { name="terminaldigits"; version="0.1.0"; sha256="0vj7pylr410wi59qj2313iximsyl0v9ffg7z9gcfg720g5zrvfkm"; depends=[discretefit Rcpp]; }; - tern = derive2 { name="tern"; version="0.9.0"; sha256="1z5xqbf81si3l0rcjgc7lygh49cm0h9irmq4q9d3a03kwlwxh080"; depends=[broom car checkmate cowplot dplyr emmeans forcats formatters ggplot2 gridExtra gtable labeling lifecycle magrittr Rdpack rlang rtables scales survival tibble tidyr]; }; + tern = derive2 { name="tern"; version="0.9.3"; sha256="0znhq8sz5v229rlxgqgfzdlzc5vr8fwlz6xccycmqsq5w2c7zjhf"; depends=[broom car checkmate cowplot dplyr emmeans forcats formatters ggplot2 gridExtra gtable labeling lifecycle magrittr Rdpack rlang rtables scales survival tibble tidyr]; }; + tern_gee = derive2 { name="tern.gee"; version="0.1.3"; sha256="1nnficsy1irry6fjx6bdlq2jm6vpgfkl8h9z780y29rhid5jbv4d"; depends=[checkmate emmeans formatters geeasy geepack nlme rtables tern]; }; + tern_mmrm = derive2 { name="tern.mmrm"; version="0.3.0"; sha256="0iiyqcc34dicgfvr2wk499m234cb9nb4zxndgxdb2xnzisx53inq"; depends=[checkmate cowplot dplyr emmeans formatters generics ggplot2 lifecycle magrittr mmrm parallelly rlang rtables tern tidyr]; }; ternvis = derive2 { name="ternvis"; version="1.2"; sha256="057i6i3ygxrin0npc18gsg3dpdldzafyb5sr6lix5mhy6b09lkxf"; depends=[dichromat maps quadprog]; }; - terra = derive2 { name="terra"; version="1.7-55"; sha256="1v1if9ypmra02ngg4r8qg1hldmxan8lyyhgq3j969glihpyvs03h"; depends=[Rcpp]; }; + terra = derive2 { name="terra"; version="1.7-65"; sha256="0m9s5am8l6il1q0skab614cx0qjsb1i9xcv6nm0sdzj7p9lrzkfl"; depends=[Rcpp]; }; terrainmeshr = derive2 { name="terrainmeshr"; version="0.1.0"; sha256="1xab6wzq2izzdvsss1rlgp5m3cn45naxhymq6cglipj0fd792jbr"; depends=[Rcpp]; }; terrainr = derive2 { name="terrainr"; version="0.7.5"; sha256="1bxwv94pkd4yskhqcwg891caiknipgr2lwcmy54znr8gchsm5527"; depends=[base64enc ggplot2 glue httr magick png rlang sf terra unifir units]; }; - tessellation = derive2 { name="tessellation"; version="2.1.3"; sha256="0ahf48h38gdrp9cdqdrhwia2xh9b972rmmgk8r1ca1mlqkis72zc"; depends=[cxhull english hash interp R6 randomcoloR rgl Rvcg scales sets]; }; - tesselle = derive2 { name="tesselle"; version="1.3.0"; sha256="0lyc82jib1k1k1dg5nc0g3plcjrw05n586rakf47j4rka2pfpi70"; depends=[dimensio folio isopleuros kairos khroma tabula]; }; - tesseract = derive2 { name="tesseract"; version="5.2.0"; sha256="1wh14s66y6a56jpn8d3iqz9zs5i1lk1ffjp3p8i4iqm8rq1sm18z"; depends=[curl digest pdftools rappdirs Rcpp]; }; + tessellation = derive2 { name="tessellation"; version="2.3.0"; sha256="0l8ffw7szmfd51lf9x8vh673zq0zg8rrx1527hgllddk82kyhmia"; depends=[colorsGen cxhull english hash Polychrome R6 rgl Rvcg scales sets]; }; + tesselle = derive2 { name="tesselle"; version="1.4.0"; sha256="10ahssk9qaj7a0x82364cdqigx8af1vrxvnm2z44x7j688mc17cg"; depends=[dimensio folio isopleuros kairos khroma nexus tabula]; }; + tesseract = derive2 { name="tesseract"; version="5.2.1"; sha256="1zhpl6pbi7gwwc9y1d8cd7hb21ljcs561lyysjva4cfmqm0sdazz"; depends=[curl digest pdftools rappdirs Rcpp]; }; test2norm = derive2 { name="test2norm"; version="0.2.1"; sha256="1llzvdggjvc72qwkv9iiqxx7prj3hnr9bqpwsib4qmfpmmxsif37"; depends=[mfp]; }; testCompareR = derive2 { name="testCompareR"; version="1.0.2"; sha256="1k4y7hk7f9bs0bkcmi434khfg1c0lr930l50rydvjlwdgbhfy4k1"; depends=[]; }; testDriveR = derive2 { name="testDriveR"; version="0.5.2"; sha256="144bni3dg7bdmxnxyyal94j1nddqshgys9wfkdcc262n8y3v13i5"; depends=[]; }; @@ -18664,11 +18946,11 @@ in with self; { testassay = derive2 { name="testassay"; version="0.1.1"; sha256="1gc35s5an0cpvadwx4bswy5lzcp01az3gnkjhvph6sm3pi3xjxm7"; depends=[]; }; testcorr = derive2 { name="testcorr"; version="0.2.0"; sha256="0bqhf4p4csyd430240d8gh09axpz3h108fh78sbgpyqdhiq3d1fh"; depends=[forcats ggplot2 knitr reshape2 scales]; }; testdat = derive2 { name="testdat"; version="0.4.2"; sha256="0ybmw0i7pr40h720iwpzvyyr26zb7akjkwbmw6243f644yl4rr0w"; depends=[dplyr glue lifecycle rlang stringr testthat tidyselect]; }; - testequavar = derive2 { name="testequavar"; version="0.1.4"; sha256="1cz7ffcnznd7pd7f0kd9ay0ym46g2hbdv9sq5wngis2p4srf0ykj"; depends=[]; }; + testequavar = derive2 { name="testequavar"; version="0.1.5"; sha256="1b8xrv7y3502wb7d2mj20lfdpignc7bs80zbrjy8w3f5qjxlalyc"; depends=[]; }; tester = derive2 { name="tester"; version="0.1.7"; sha256="1x5m43abk3x3fvb2yrb1xwa7rb4jxl8wjrnkyd899ii1kh8lbimr"; depends=[]; }; testforDEP = derive2 { name="testforDEP"; version="0.2.0"; sha256="1mgzhj8b35r5cm4bl0nnyxj0h7rwd28d17qvgvaky2kvm2r83cf9"; depends=[Hmisc minerva Rcpp]; }; testit = derive2 { name="testit"; version="0.13"; sha256="104dcxdmzgj340mwk4lpw1y6j1xc4rv4a2v09ckx3nvbmdl73m4h"; depends=[]; }; - testthat = derive2 { name="testthat"; version="3.2.0"; sha256="03k58p8kd7vddx7rlcyi28sy48bh3w4xy4c7wi190l7yjlrfa2sv"; depends=[brio callr cli desc digest ellipsis evaluate jsonlite lifecycle magrittr pkgload praise processx ps R6 rlang waldo withr]; }; + testthat = derive2 { name="testthat"; version="3.2.1"; sha256="1ba80zk9jzs91xl82bykhrvvgamfvp1h189rfq099h813dhhx60x"; depends=[brio callr cli desc digest evaluate jsonlite lifecycle magrittr pkgload praise processx ps R6 rlang waldo withr]; }; testthis = derive2 { name="testthis"; version="1.1.1"; sha256="0csragn695698dpkr9d3md0g81bzpy5mybd0jik669q9cs8sdzh2"; depends=[assertthat devtools fs magrittr pkgload rprojroot stringi testthat usethis]; }; testtwice = derive2 { name="testtwice"; version="1.0.3"; sha256="06fr13ww2wqk753p0cnl1ldn3nqrvdfnz0lgkpldcn0xwiwjh2x2"; depends=[mvtnorm]; }; tetraclasse = derive2 { name="tetraclasse"; version="0.1.21"; sha256="1cl2cah0xi6x3rvvdy56iszai6rkbxc1w3x13v0l1z1nryff7c6a"; depends=[dplyr FactoMineR ggplot2 ggrepel magrittr reshape2 tibble tidyr]; }; @@ -18676,16 +18958,16 @@ in with self; { tetrascatt = derive2 { name="tetrascatt"; version="0.1.0"; sha256="1bm6as0indwpfw8j2x4wavjjkkz0430hh226flg5jdzhfmg5m2aq"; depends=[Rcpp RcppArmadillo]; }; texmex = derive2 { name="texmex"; version="2.4.8"; sha256="115x7j2kvifzsrmh8zy6xymm1p01sxk4c26zdmi0p51bsgvs46ih"; depends=[ggplot2 mvtnorm Rcpp]; }; texor = derive2 { name="texor"; version="1.3.0"; sha256="12sjrxg82ynjs3s4mah5mhm011d9qmmv1s10kbna69n84j4a6vlc"; depends=[cli logger pdftools rebib rjtools rmarkdown stringr tinytex whisker xfun yaml]; }; - texreg = derive2 { name="texreg"; version="1.38.6"; sha256="1z8j9whybvzjcrvivk3jhh8clfrbwdb7ss6mhqp0dlhbq2vn7gb8"; depends=[httr]; }; + texreg = derive2 { name="texreg"; version="1.39.3"; sha256="0kbdnxfgdin4vydrw84xzbw9xldvn8paikij9ya8976la6gpf6il"; depends=[httr]; }; text = derive2 { name="text"; version="1.0"; sha256="1dhq3i9q3frmjl6p7c29g7xvkbb7bpm3sv1hy9r7glymqjqgf718"; depends=[cowplot dplyr furrr future ggplot2 ggrepel magrittr overlapping parsnip purrr recipes reticulate rlang rsample stringi tibble tidyr tune workflows yardstick]; }; text_alignment = derive2 { name="text.alignment"; version="0.1.4"; sha256="1zw0hxrplpvn2w36q9cwm7s8hxixdin9yzkwj1fhxh5sgc7fq471"; depends=[Rcpp]; }; text2map = derive2 { name="text2map"; version="0.1.7"; sha256="1lr9bg1vbighpw2knh6bbj0f812frabzb513wc6gc209ig8yfpj3"; depends=[ClusterR doParallel dplyr fastmatch foreach igraph kit magrittr Matrix permute qgraph rlang rsvd stringi stringr text2vec tibble]; }; text2sdg = derive2 { name="text2sdg"; version="1.1.1"; sha256="133cqh9j3akqfh0m3cbi6splbmzp7plm5gxaiv2w0f0qih31f5fk"; depends=[corpustools dplyr ggplot2 lifecycle magrittr ranger stringr text2sdgData tibble tidyr]; }; text2sdgData = derive2 { name="text2sdgData"; version="0.1.1"; sha256="0wqfpkixbgmbd0i13a0vrzjnw2fj0qiyxrmd7grlyjkk1cq8i7yn"; depends=[]; }; text2speech = derive2 { name="text2speech"; version="1.0.0"; sha256="0xgdwwzfbc1l8bj3xvrj67xnhhq6si7n1cq3fgznqhw4ycxkgih7"; depends=[aws_signature cli conrad dplyr googleAuthR googleLanguageR knitr magrittr tidyr tuneR withr]; }; - text2vec = derive2 { name="text2vec"; version="0.6.3"; sha256="1hi7ydb7xkgbff4lwnnz1biyl8m90w16hn3x5rrzvscvm53sj4y7"; depends=[data_table digest lgr Matrix mlapi R6 Rcpp rsparse stringi]; }; + text2vec = derive2 { name="text2vec"; version="0.6.4"; sha256="0sjlvp4zhzwc0ai7626fpw3ws8xv0xhl8gv8mrk24lrpk5nhin2h"; depends=[data_table digest lgr Matrix mlapi R6 Rcpp rsparse stringi]; }; textBoxPlacement = derive2 { name="textBoxPlacement"; version="1.0"; sha256="1wjha1i4bnyxw4sa2ayy22lybz2yg97ljja7lfwhw6jrys82gkvz"; depends=[]; }; - textTinyR = derive2 { name="textTinyR"; version="1.1.7"; sha256="17c3vciqx2i0h0jkqsiva8kp6pwcrscwgyxf804sjvdbym0pwc7d"; depends=[BH data_table Matrix R6 Rcpp RcppArmadillo]; }; + textTinyR = derive2 { name="textTinyR"; version="1.1.8"; sha256="15yzxxnnkaj9x94dqpsqy67r7mlh7wdqir5fira8sjr4j1fqx3l1"; depends=[BH data_table Matrix R6 Rcpp RcppArmadillo]; }; textTools = derive2 { name="textTools"; version="0.1.0"; sha256="1d9j1bj17ki169h4lmlz2b2c2m60q6b95prjscz346lc4vw5160a"; depends=[data_table]; }; textab = derive2 { name="textab"; version="1.0.1"; sha256="1z965iw7457yldz6nm2hfjq6c5q12j1cza7v0jkbgi9zaydsbml2"; depends=[]; }; textcat = derive2 { name="textcat"; version="1.0-8"; sha256="17kl76m6065ci84p4ii7fxhwg1fckwf8690m71w9rbkbax3h2rfb"; depends=[slam tau]; }; @@ -18693,7 +18975,6 @@ in with self; { textdata = derive2 { name="textdata"; version="0.4.4"; sha256="1hz74sdhypf67w1p71igwaqdiv0w635lbdm4hvd0zdzhz1w1cxd7"; depends=[fs rappdirs readr tibble]; }; texteffect = derive2 { name="texteffect"; version="0.3"; sha256="1qcbr18h3vakh6ymw4axzqcqrpss6z68a592xl879b82l2nlq8a7"; depends=[boot ggplot2 MASS]; }; texter = derive2 { name="texter"; version="0.1.9"; sha256="1vj1dlv2dyb3hyr60p91sh4p514i0m7gf86zk32xbdyv6k9zdkmf"; depends=[dplyr ggplot2 magrittr plyr purrr stopwords stringr textdata tidyr tidytext]; }; - textfeatures = derive2 { name="textfeatures"; version="0.3.3"; sha256="0x67kms7ipsadymc9jwja7wymav8y9kc5sbmp2vw4n4l89n32raa"; depends=[dplyr purrr rlang text2vec tfse tibble tokenizers]; }; textgRid = derive2 { name="textgRid"; version="1.0.1"; sha256="1wi5vq5f7ixhz39l5hqi2jlmjjacx4lyrs4h8xfbd47pj6g16lc6"; depends=[]; }; textile = derive2 { name="textile"; version="0.1.4"; sha256="069gb0j8ym44j1wk05xd3sixbvpxhhnhwax2gvyb9kbh5b99qpi6"; depends=[]; }; textir = derive2 { name="textir"; version="2.0-5"; sha256="0ban5qiinlxizqpcgafv4b5gwxlil6jdfarjd6l1m48awxh3mlnb"; depends=[distrom gamlr Matrix]; }; @@ -18701,7 +18982,7 @@ in with self; { textometry = derive2 { name="textometry"; version="0.1.6"; sha256="0frxwi3n7syjgjxgzc4ync9svd25bq2zyppiyrla1n85dawi3r8f"; depends=[]; }; textplot = derive2 { name="textplot"; version="0.2.2"; sha256="1ag2h365zsx0fxbl05s2yfhf1q13p40akvbqg4qwsb5ynh2a56bf"; depends=[data_table lattice Matrix]; }; textrank = derive2 { name="textrank"; version="0.3.1"; sha256="0a777wchiax0y8jprvz5xw8h1xh7yvad0wrqhkgbqy5p3cvlcih6"; depends=[data_table digest igraph]; }; - textrecipes = derive2 { name="textrecipes"; version="1.0.5"; sha256="17cglg8zgx2fj66i8sx0njmf0h084cc178hc62f3fshlp5yl751z"; depends=[cpp11 dplyr generics glue lifecycle magrittr Matrix purrr recipes rlang SnowballC tibble tokenizers vctrs]; }; + textrecipes = derive2 { name="textrecipes"; version="1.0.6"; sha256="0c4l54vqawnwl1341mk5jvqwj1r0dwdprbp2fh362493c8fy04iv"; depends=[cpp11 dplyr generics glue lifecycle magrittr Matrix purrr recipes rlang SnowballC tibble tokenizers vctrs]; }; textreg = derive2 { name="textreg"; version="0.1.5"; sha256="0h44z5hyndnvzd9axix7gpmhbdx347dfgxw9r8w38kyw6dklbjy6"; depends=[NLP Rcpp tm]; }; textreuse = derive2 { name="textreuse"; version="0.1.5"; sha256="1mva0f6pk0kpfw0vf90qw3a25f1i3imdhk2s7hxyzans0z2237jd"; depends=[assertthat BH digest dplyr NLP Rcpp RcppProgress stringr tibble tidyr]; }; textshape = derive2 { name="textshape"; version="1.7.3"; sha256="0k9injxykgj2qprc7dygd7gafvcbh3r9x84qzaa1al21pk0dz7ds"; depends=[data_table slam stringi]; }; @@ -18727,21 +19008,20 @@ in with self; { tfrmt = derive2 { name="tfrmt"; version="0.1.0"; sha256="0jrgggb2pwnrwwkajnp8wlpzjblzr4d1vlngik5g4sbj6kmpgvvc"; depends=[dplyr forcats ggplot2 glue gt jsonlite magrittr purrr rlang stringi stringr tibble tidyr tidyselect]; }; tfrmtbuilder = derive2 { name="tfrmtbuilder"; version="0.0.5"; sha256="0zm2z607vi8chrqcfm4yx3xic6cq7ws0r3fqy6p66nyn3h7zndbx"; depends=[bslib dplyr DT fontawesome forcats gt purrr rio rlang shiny shinyAce shinycssloaders shinyFeedback shinyjs shinyWidgets sortable stringr tfrmt tidyr webshot2]; }; tfruns = derive2 { name="tfruns"; version="1.5.1"; sha256="1xk7dl51xd1h54798xwycvxmn77jv80in61hanm36zk0024wpxg8"; depends=[base64enc config jsonlite magrittr reticulate rlang rstudioapi tidyselect whisker yaml]; }; - tfse = derive2 { name="tfse"; version="0.5.0"; sha256="05q75xsiy955xwgchagk7l7725y6mylp5lj5284xm7y2xh197zp3"; depends=[dapr magrittr]; }; tgamtheme = derive2 { name="tgamtheme"; version="0.1.0"; sha256="1igv6vl3vqqx8pbvj5qr21cjphpizq3b5sjss359bhw2gy747npl"; depends=[ggplot2]; }; tgcd = derive2 { name="tgcd"; version="2.7"; sha256="0ncd642yamwg4xgwrzavfral0gwkk0zlffw4w4ixw0yn0f7d7vv9"; depends=[]; }; tggd = derive2 { name="tggd"; version="0.1.1"; sha256="1izar1b3w148vp2r8gv3vpwfndib8ilxcjxgbfzbxn7q5mr73mwa"; depends=[gsl]; }; tglkmeans = derive2 { name="tglkmeans"; version="0.3.11"; sha256="036b4f3qns6av2pmldd7dkkcrlxbdfdmlc6mx2yvbcwfzg0qfhcn"; depends=[doFuture dplyr future ggplot2 magrittr plyr purrr Rcpp tgstat tibble]; }; - tgp = derive2 { name="tgp"; version="2.4-21"; sha256="12ifd7rm3wskhbpnhfvz92z3graxzryq0iy1jiqmdk6bvhxkiww8"; depends=[maptree]; }; + tgp = derive2 { name="tgp"; version="2.4-22"; sha256="0gpndjq2xiic6fb5187f4hgrqj3477pd83caajnw3yy9wan4vly6"; depends=[maptree]; }; tgram = derive2 { name="tgram"; version="0.2-3"; sha256="0vlnry8drq3fqfy8dk50pcwcx9dj657kx6s19fs2b6acigkr4g7w"; depends=[zoo]; }; - tgstat = derive2 { name="tgstat"; version="2.3.24"; sha256="0czd3j7z30jgb03813s0jc0701ypnwpkkq7var6n6f6cj7sdvc0l"; depends=[]; }; + tgstat = derive2 { name="tgstat"; version="2.3.25"; sha256="07hdw3n4l88nr0x2a2qnjich4cfihgd0fk65ar3crgdahjcv9vn4"; depends=[]; }; tgver = derive2 { name="tgver"; version="0.3.0"; sha256="1kw622xcjhca7k178q3wpmjyidjifvql9xpg2ai8842qhgz14bm0"; depends=[callr geojsonsf plumber]; }; thaipdf = derive2 { name="thaipdf"; version="0.1.2"; sha256="03h03bmw6q60jc80z14k7hpli0knhfbmhns0inbz0nhvisfzmsbq"; depends=[cli fs rmarkdown]; }; - thames = derive2 { name="thames"; version="0.1.0"; sha256="1dbrnfp3li8dwqfzbhpcxydh8spfw40f8rv54hpjllh9jhlpzvis"; depends=[uniformly]; }; + thames = derive2 { name="thames"; version="0.1.1"; sha256="09k4ygi865115c98mgzpvx7ab4kbghasg3fvnmd3c1nhs6h7szmn"; depends=[uniformly]; }; thankr = derive2 { name="thankr"; version="1.0.0"; sha256="089ikp85d5ia6a1qzmw8dkgcmz628cibmwfzcpk7m3ii8acxq91w"; depends=[]; }; theft = derive2 { name="theft"; version="0.5.4.1"; sha256="0knm636wx8ljdacd7cb4ny450pkh79lxx09vnpssbz4x0hgm9j64"; depends=[broom dplyr e1071 fabletools feasts ggplot2 janitor purrr R_matlab Rcatch22 reshape2 reticulate rlang Rtsne scales tibble tidyr tsfeatures tsibble]; }; theiaR = derive2 { name="theiaR"; version="0.4.0"; sha256="07m532r67cil2ya2w9lfhycrm8n0ga0r3x7jwbp5jbd83hw4l1p6"; depends=[askpass httr R6 raster XML]; }; - thematic = derive2 { name="thematic"; version="0.1.3"; sha256="01i3qxqil7a1r0cim5whs0glmpkhwgzxn2jc5m0acgrfk9z9rwpf"; depends=[farver ggplot2 rappdirs rlang rstudioapi scales]; }; + thematic = derive2 { name="thematic"; version="0.1.4"; sha256="10p4fk6ljwcyy5xs2wffdx27pjmmgwasb5jj24c1chqsf5cwrhvf"; depends=[farver ggplot2 rappdirs rlang rstudioapi scales]; }; themis = derive2 { name="themis"; version="1.0.2"; sha256="1qg1kxax866s84rgjlp2c153793j45lrvay8bqfjnc2cj04h2dgi"; depends=[dplyr generics glue gower hardhat lifecycle purrr RANN recipes rlang ROSE tibble vctrs withr]; }; thermocouple = derive2 { name="thermocouple"; version="1.0.2"; sha256="1rlvhw3i83iq1vibli84gj67d98whvgkxafwpmisva1m4s1bmij4"; depends=[]; }; thestats = derive2 { name="thestats"; version="0.1.0"; sha256="15y6ibw7i4nrm8990yirqf64gl1x4l7lj3ajk19vi6ccxw82x2gl"; depends=[dplyr]; }; @@ -18749,8 +19029,8 @@ in with self; { thgenetics = derive2 { name="thgenetics"; version="0.4-2"; sha256="1314gry3xs9v4jy13g08q16qy4ax3s0bc7d74gi0wbpkgdrk3lql"; depends=[]; }; thief = derive2 { name="thief"; version="0.3"; sha256="12ymkkisg5p0g1gmvlczhp4dc7mirjg55fqqmz2d90673vlg6rfq"; depends=[forecast ggplot2 hts]; }; thinkr = derive2 { name="thinkr"; version="0.16"; sha256="104n4g70fk209b721qchrbv95dwxzq6vvhz36asdk40kzzacdzp2"; depends=[assertthat cli devtools dplyr ggplot2 lazyeval lubridate magrittr officer rvg stringi stringr tidyr withr]; }; - this_path = derive2 { name="this.path"; version="2.1.0"; sha256="1qq1la2725m5kgbwizhh62a06ywlh9qgsygh5f9zv1v5fxksxi9y"; depends=[]; }; - thor = derive2 { name="thor"; version="1.1.4"; sha256="0y75lnmjdcjxca3a0h9a30c0cll68arbv7rbdxkla92arm3k39vx"; depends=[R6 storr]; }; + this_path = derive2 { name="this.path"; version="2.3.1"; sha256="0gf1859dgp5z0wj0xbv3ri8pg8bwng4j2nhfzlhy0k7zlhhwrv3p"; depends=[]; }; + thor = derive2 { name="thor"; version="1.1.5"; sha256="1bpcyzw5xwl4vdld7ysrychcz35lz8g8qhpq0ca3bkkihj62v04r"; depends=[R6 storr]; }; thorn = derive2 { name="thorn"; version="0.2.0"; sha256="0sybjqwv9al5khkhhc7khbgr7n2vy6aggarh9n75mxpa8hn7j2qr"; depends=[htmlwidgets]; }; thredds = derive2 { name="thredds"; version="0.1-4"; sha256="1323hgd7id4q1g88bczvnghdlb3g2vmywhij0f98ghj0a0ip6v00"; depends=[httr magrittr R6 rlang xml2]; }; threeBrain = derive2 { name="threeBrain"; version="1.0.1"; sha256="0pg5azxjqvwjl6235f0vnic04rz8vvaski0ac17mjn5ny1l0qnc1"; depends=[digest dipsaus freesurferformats gifti htmlwidgets jsonlite oro_nifti R6 ravetools servr shiny stringr xml2]; }; @@ -18759,28 +19039,28 @@ in with self; { threewords = derive2 { name="threewords"; version="0.1.0"; sha256="083y5i4qyl1wj017wy5ywl2yx9wvrpjl9g9k9clvnrbwzbycx2cg"; depends=[httr]; }; threg = derive2 { name="threg"; version="1.0.3"; sha256="1ja0w4hhdkw3b1cipbpw8ym27k5lh2m7gibd74mj6gij7rpixrnb"; depends=[Formula survival]; }; thregI = derive2 { name="thregI"; version="1.0.4"; sha256="0zddd32fnfi98zwq08akkvhkg3c66sj3jii6ap8p1m9a0wg2k2k3"; depends=[Formula survival]; }; - threshr = derive2 { name="threshr"; version="1.0.4"; sha256="10z0iv8rn78b9mk8sgsknnqp4g726bgw47f3cn7bgc2hg1g9f18a"; depends=[revdbayes rust]; }; + threshr = derive2 { name="threshr"; version="1.0.5"; sha256="0gr5vnb3bc6b2blpa63mvyhgyjkplq8x0p27h7czjnwinzwsrwrg"; depends=[revdbayes rust]; }; thriftr = derive2 { name="thriftr"; version="1.1.7"; sha256="0qx96nd9wdmxgvlvv43q51qrqpmb98vz6hmrhlq3hp91w3g20p5a"; depends=[R6 rly stringi]; }; - thunder = derive2 { name="thunder"; version="1.1.2"; sha256="10ii36qflc4wrvv0xgvvvbc12l3zai15njibsmlfvi8z89ai0jkl"; depends=[aiRthermo curl dplyr httr Rcpp]; }; - thurstonianIRT = derive2 { name="thurstonianIRT"; version="0.12.3"; sha256="038d26hmhmyjwxssl4568ypjn8q28k08abz05ccddiw8ai992rw3"; depends=[BH dplyr knitr lavaan magrittr mvtnorm Rcpp RcppEigen RcppParallel rlang rstan rstantools StanHeaders tibble tidyr]; }; + thunder = derive2 { name="thunder"; version="1.1.3"; sha256="0gn4kkpagh5blhp1zpgilkpa8mwfz8w05qlri5ca4wwcy7xkmn41"; depends=[aiRthermo curl dplyr httr Rcpp]; }; + thurstonianIRT = derive2 { name="thurstonianIRT"; version="0.12.4"; sha256="1gvijkxiy4zwg5hxg4qhy3dgcck2gm4nh6bjacxsz5yvai3fagsa"; depends=[BH dplyr lavaan magrittr mvtnorm Rcpp RcppEigen RcppParallel rlang rstan rstantools StanHeaders tibble tidyr]; }; tibble = derive2 { name="tibble"; version="3.2.1"; sha256="0c916wl19wbhncv05hjzs2vmvvbcxlswjl6i232ygmkzal62v9v5"; depends=[fansi lifecycle magrittr pillar pkgconfig rlang vctrs]; }; tibbletime = derive2 { name="tibbletime"; version="0.1.8"; sha256="18a63vipcw95yk37r490a3a4xag59v7475bch2dizq7nqhfc5wfn"; depends=[assertthat dplyr glue hms lifecycle lubridate pillar purrr Rcpp rlang tibble vctrs zoo]; }; tibblify = derive2 { name="tibblify"; version="0.3.0"; sha256="1hir7rb0zn9cz2yjfrg17is0ryzzxfxsan0sij0c0dh9v171cp0w"; depends=[cli lifecycle purrr rlang tibble tidyselect vctrs withr]; }; tictactoe = derive2 { name="tictactoe"; version="0.2.2"; sha256="1fx8plj5zr04xwk5hfj3zqhcknidxlzya2q14cf0m3y33a86lx42"; depends=[hash]; }; tictoc = derive2 { name="tictoc"; version="1.2"; sha256="037jbwb58mj5asf3kr6hpf3fy9c6fkinnd8hbpfb141a2jsa8pph"; depends=[]; }; tidier = derive2 { name="tidier"; version="0.2.0"; sha256="0n6gzanssni5l5wmm5iqql1k2wfxg7dzq1rk3dhar7rpyxghdnf1"; depends=[checkmate dbplyr dplyr furrr magrittr rlang slider tidyr]; }; - tidyAML = derive2 { name="tidyAML"; version="0.0.2"; sha256="0939wymf9k4v2nh0yr1anw5jpqpxnrq8b5c5ikdyrdk70zfpd67j"; depends=[dplyr forcats magrittr parsnip purrr rlang rsample workflows workflowsets]; }; + tidyAML = derive2 { name="tidyAML"; version="0.0.3"; sha256="129y8i2642fvgzf6j0jpiqkxzqsc3j66idnmqimd19rq6316glhb"; depends=[dplyr forcats parsnip purrr rlang rsample workflows workflowsets]; }; tidyBdE = derive2 { name="tidyBdE"; version="0.3.4"; sha256="1jfkcpg42ndclkiarqh1qx2g1mk8mf7n65rbgi0liwvlv770kvy6"; depends=[dplyr ggplot2 readr scales tibble tidyr]; }; tidyCDISC = derive2 { name="tidyCDISC"; version="0.2.1"; sha256="06pri456bqmvnfna7g092ccd7lqr3bc9gdnw67d7nfz91qwnsny6"; depends=[cicerone config dplyr DT GGally ggcorrplot ggplot2 glue golem gt haven IDEAFilter plotly purrr rlang rmarkdown shiny shinyjs shinyWidgets sjlabelled stringr survival tidyr timevis tippy]; }; - tidyCpp = derive2 { name="tidyCpp"; version="0.0.6"; sha256="1w6fr4q137ar6557a8x1jpmfmlsga59621jwq0sf37bnn535i4gw"; depends=[]; }; + tidyCpp = derive2 { name="tidyCpp"; version="0.0.7"; sha256="0h2h0r8v1fp3sl4caf3nkhf4f75zncadkz9axzwncig7a7qvb00z"; depends=[]; }; tidyEdSurvey = derive2 { name="tidyEdSurvey"; version="0.1.2"; sha256="0m7nf7kzniwqkissfgmmdda75aiww6r5ih17h1xswr8xh7sb4q4y"; depends=[cli dplyr EdSurvey ggplot2 lifecycle rlang tidyselect]; }; tidyEmoji = derive2 { name="tidyEmoji"; version="0.1.1"; sha256="0gy178kdj5c2mdxmczhbh3wai8lk9d2fk6c8qn8fpz3mc97zlx7p"; depends=[dplyr emoji purrr stringr tibble tidyr]; }; tidyHeatmap = derive2 { name="tidyHeatmap"; version="1.8.1"; sha256="19gpp8p3ms60qzny26vx8h7x4zl495ynrfrvf1nndhm2njbx6i4m"; depends=[circlize ComplexHeatmap dendextend dplyr lifecycle magrittr patchwork purrr RColorBrewer rlang tibble tidyr viridis]; }; tidyLPA = derive2 { name="tidyLPA"; version="1.1.0"; sha256="1lyd8cx90j49bm65330i57jyimiid75c2pvnzk7dcp6mbmglvimz"; depends=[dplyr ggplot2 gtable mclust mix MplusAutomation tibble]; }; tidyREDCap = derive2 { name="tidyREDCap"; version="1.1.1"; sha256="1k06bnxvq5k4j005h269n5ivxn1vr2i8nkdg048q8m7vmpanwz4m"; depends=[cli dplyr janitor labelVector magrittr purrr REDCapR rlang stringr tibble tidyr tidyselect vctrs]; }; tidyRSS = derive2 { name="tidyRSS"; version="2.0.7"; sha256="1v9c4cjh2apxsk5s1qyqg5pb02l83qhlg6bj684zvdmc4fqac6zw"; depends=[anytime dplyr glue httr jsonlite magrittr purrr rlang tibble tidyselect vctrs xml2]; }; - tidySEM = derive2 { name="tidySEM"; version="0.2.5"; sha256="10q1ahcg52vyzjiz94rlhhlgn0pb0cjh7avbsmdg6qha9wkfphgn"; depends=[bain blavaan car dagitty dbscan future_apply ggplot2 gtable igraph lavaan Matrix MplusAutomation nonnest2 OpenMx progressr psych RANN]; }; - tidyUSDA = derive2 { name="tidyUSDA"; version="0.4.0"; sha256="0wbhrhb87zrk93b1nhll6pqhh4gpxf3x3j28m09vgzdggxhk9w5y"; depends=[checkmate crayon dplyr fuzzyjoin ggplot2 httr jsonlite magrittr sf tigris]; }; + tidySEM = derive2 { name="tidySEM"; version="0.2.6"; sha256="0vsk4z1mpzmyg618c5sqmblv8c8pzhwbrbxwdq4cpg7sl6agbhb0"; depends=[bain blavaan car dbscan future_apply ggplot2 gtable igraph lavaan Matrix MplusAutomation nonnest2 OpenMx progressr psych RANN]; }; + tidyUSDA = derive2 { name="tidyUSDA"; version="0.4.1"; sha256="1llqz8xs6zkg0vqz6hks6jghxsfyp35k3n4882qg3w6lr080ir8b"; depends=[checkmate crayon dplyr fuzzyjoin ggplot2 httr jsonlite magrittr sf tigris]; }; tidybayes = derive2 { name="tidybayes"; version="3.0.6"; sha256="146vmb3sf3ld6n20bbd8lj972g6xcclmisqsmnjq99jmg3hl8q3h"; depends=[arrayhelpers cli coda dplyr ggdist ggplot2 magrittr posterior rlang tibble tidyr tidyselect vctrs withr]; }; tidybins = derive2 { name="tidybins"; version="0.1.0"; sha256="1kwwz0y1anlf1l8yl80xyiggdi8alsh0drb1529rijfk2jxlljg9"; depends=[badger ClusterR dplyr framecleaner ggplot2 janitor lubridate magrittr OneR purrr rlang rlist scales strex stringr tibble tidyselect xgboost]; }; tidyboot = derive2 { name="tidyboot"; version="0.1.1"; sha256="0nss1ci763g9p5f33g163ppamx72axc8xhrils0cql3ka8439pmn"; depends=[dplyr modelr purrr rlang tidyr]; }; @@ -18788,17 +19068,17 @@ in with self; { tidycensus = derive2 { name="tidycensus"; version="1.5"; sha256="1macaf6zfklbk8f5zhj6diicfbqnipg8xraclail657p1ii3pfb6"; depends=[crayon dplyr httr jsonlite purrr rappdirs readr rlang rvest sf stringr tidyr tidyselect tigris units xml2]; }; tidycharts = derive2 { name="tidycharts"; version="0.1.3"; sha256="1clpjyvqv6xhv7n64xh411x867fnn581qckzcwn18xbbbs56k6nn"; depends=[htmlwidgets knitr lubridate magick magrittr rlang rsvg stringr testthat]; }; tidyclust = derive2 { name="tidyclust"; version="0.2.0"; sha256="1zsy329z29j2ad413i7h24aijgqpjvl8imffq4pcqnxydwbf2z0d"; depends=[cli dials dplyr flexclust foreach generics glue hardhat modelenv parsnip prettyunits Rfast rlang rsample tibble tidyr tune vctrs]; }; - tidycmprsk = derive2 { name="tidycmprsk"; version="0.2.0"; sha256="1smcjicx7xz07iagzv2a87kc9q0j2sgpnakhv7dc18zw2ndpls1q"; depends=[broom cli cmprsk dplyr ggplot2 gtsummary hardhat purrr rlang stringr survival tibble tidyr]; }; + tidycmprsk = derive2 { name="tidycmprsk"; version="1.0.0"; sha256="15a3v0lmqnqf3zc0mdjrxpvm02r20fbmh7ma3y1myl00gs7swv8l"; depends=[broom cli cmprsk dplyr ggplot2 gtsummary hardhat purrr rlang stringr survival tibble tidyr]; }; tidycode = derive2 { name="tidycode"; version="0.1.1"; sha256="0ahjhn1ar93xnd1snxnivdl43d1b6ica0pc30rgh8jpha87zbsay"; depends=[glue matahari pryr purrr rlang tibble]; }; tidycomm = derive2 { name="tidycomm"; version="0.2.1"; sha256="1h1xixa7fbijp1iifpwl689b1pz1vvpy7v4sc9wnkqgw0q31b3iy"; depends=[broom dplyr forcats glue magrittr MBESS purrr rlang stringr tibble tidyr]; }; tidycwl = derive2 { name="tidycwl"; version="1.0.7"; sha256="172qpalm4n4m39pmg9g3fzd1hhfrnay76v1wmy861vmar000xcdp"; depends=[dplyr htmlwidgets jsonlite magrittr visNetwork webshot yaml]; }; - tidydann = derive2 { name="tidydann"; version="0.1.0"; sha256="1kn21xx5hd0fy8lkgrfsqz3yxg8zfcpr99lwz4vfqyi624dkdn4h"; depends=[dials generics parsnip rlang tibble]; }; + tidydann = derive2 { name="tidydann"; version="1.0.0"; sha256="12j00iw12v68cq4jnpqcp2gidawz75g706y0vsmyqvz99cjzmj97"; depends=[dials generics parsnip tibble]; }; tidydatatutor = derive2 { name="tidydatatutor"; version="0.1.0"; sha256="0d7qr1j5ag6ikzq89xc7w9pvsbcp14r0x8ra9v4svx59bg31n94q"; depends=[clipr knitr rstudioapi]; }; tidydice = derive2 { name="tidydice"; version="1.0.0"; sha256="19qpjd4v4drn8fiqvv4ajs0q9v4lhdnqgpn27arl4dmqi6dnq1h3"; depends=[assertthat dplyr ggplot2 magrittr purrr stringr tibble tidyr]; }; tidydr = derive2 { name="tidydr"; version="0.0.5"; sha256="16vghbd4iacw3480jzf12cm37azhz7xfql5z6hzh8nin48wsawiw"; depends=[ggfun ggplot2 rlang]; }; tidyestimate = derive2 { name="tidyestimate"; version="1.1.1"; sha256="0jsi14az84np5wr5zrqgnvy3rn9sv7v8yf7k34iacj35gdw7yx6c"; depends=[dplyr ggplot2 ggrepel glue rlang]; }; tidyfast = derive2 { name="tidyfast"; version="0.2.1"; sha256="1bfs2wma705nx1lpndq75ama5dr9kkg8hwpklb20csnccnfrlvf6"; depends=[data_table Rcpp]; }; - tidyfit = derive2 { name="tidyfit"; version="0.6.4"; sha256="0amqzqnxkv9a6ywmyqkvyqhls1mm7kqdnysg12zjhcx1bk6wg98d"; depends=[broom crayon dials dplyr furrr magrittr MASS progressr purrr rlang rsample tibble tidyr yardstick]; }; + tidyfit = derive2 { name="tidyfit"; version="0.6.5"; sha256="1vka4j87pgk7hs1z4nj8yqrdzfwcqx74qwvlf0dv8z0xz2f8b78y"; depends=[broom crayon dials dplyr furrr magrittr MASS progressr purrr rlang rsample tibble tidyr yardstick]; }; tidyformula = derive2 { name="tidyformula"; version="0.1.0"; sha256="1sz5v8l1gpci1jzs87qgxr95nr881rz5lidlfwgfi8963kgvigvg"; depends=[dplyr purrr rlang]; }; tidyfst = derive2 { name="tidyfst"; version="1.7.7"; sha256="1vmlbsnj3kq2gl71kv3xz87cdwkkkmn6lnl4j8rf65njsjh1r9ra"; depends=[data_table fst stringr]; }; tidyft = derive2 { name="tidyft"; version="0.5.7"; sha256="00qcsr2sx8fwyil384vgppx0q72qjrkj7h5nv4mdxdi8f9h6ph2r"; depends=[data_table fst stringr]; }; @@ -18808,11 +19088,12 @@ in with self; { tidygenomics = derive2 { name="tidygenomics"; version="0.1.2"; sha256="1cnwmmmzp9kg4k7iy2kgb22bdllpnz257pv1ahy3l11zy6bl48fc"; depends=[dplyr fuzzyjoin IRanges purrr Rcpp rlang tidyr]; }; tidygeoRSS = derive2 { name="tidygeoRSS"; version="0.0.1"; sha256="0bppkwbxmm8ps1cnrhzxkzm2pbi3s5bfiwx8fcrp31x81jl61w1x"; depends=[anytime dplyr httr jsonlite magrittr purrr rlang sf strex stringr tidyRSS xml2]; }; tidygeocoder = derive2 { name="tidygeocoder"; version="1.0.5"; sha256="1ffj8ka5miv3jnds7fdrkcqdc3m2w1ab724z9m10biky213skqka"; depends=[dplyr httr jsonlite lifecycle progress tibble]; }; - tidygraph = derive2 { name="tidygraph"; version="1.2.3"; sha256="11sn8z7bwv84lqlgnqc36n14nyhv1qdfc0gcs7nmgbl34nqhd75h"; depends=[cli cpp11 dplyr igraph magrittr pillar R6 rlang tibble tidyr]; }; + tidygraph = derive2 { name="tidygraph"; version="1.3.0"; sha256="11qlnpn54bdlkh2jcrk807z86vw54jrb6r9za1jkb03x9dqi9cwk"; depends=[cli cpp11 dplyr igraph lifecycle magrittr pillar R6 rlang tibble tidyr]; }; tidyhte = derive2 { name="tidyhte"; version="1.0.2"; sha256="0c19b7yh09gixgicrr7x65a9vzyvzapr4pv130ysx4jksjcqvdfp"; depends=[checkmate dplyr lifecycle magrittr progress purrr R6 rlang SuperLearner tibble]; }; tidyhydat = derive2 { name="tidyhydat"; version="0.6.0"; sha256="15c54pbkm40n3i3kbmx38fkmjp9hjixdpw5ikvwjid9fzky36f1q"; depends=[cli crayon DBI dbplyr dplyr httr lubridate rappdirs readr rlang RSQLite tidyr]; }; + tidyindex = derive2 { name="tidyindex"; version="0.1.0"; sha256="1ziiycfldcy94bsl65mf9c6iav7xn2wamncdkz41d76bsxrjzbnx"; depends=[cli dplyr generics ggplot2 glue purrr rlang tidyr tidyselect tsibble vctrs]; }; tidyjson = derive2 { name="tidyjson"; version="0.3.2"; sha256="0znm590kpvkh8zl08saasnsi77x459640mqv0pq15gmsjnycldp6"; depends=[assertthat dplyr jsonlite magrittr purrr rlang tibble tidyr]; }; - tidylda = derive2 { name="tidylda"; version="0.0.3"; sha256="1wf5z6rqffah4m6f6wrb2grr8y0wjvfncy6a2i51bk22ja9hknhc"; depends=[dplyr generics gtools Matrix mvrsquared Rcpp RcppArmadillo RcppProgress RcppThread rlang stringr tibble tidyr tidytext]; }; + tidylda = derive2 { name="tidylda"; version="0.0.4"; sha256="0hc2la5fsl0z1svxzkn4ipr1ylabmhmhgdc0jgzafkwrz07dpkn2"; depends=[dplyr generics gtools Matrix mvrsquared Rcpp RcppArmadillo RcppProgress RcppThread rlang stringr tibble tidyr tidytext]; }; tidylo = derive2 { name="tidylo"; version="0.2.0"; sha256="07xnbycwrqg3cmbxx76drbjd0mx4s23vf3kihlc9rj4ajjx48z8r"; depends=[dplyr rlang]; }; tidylog = derive2 { name="tidylog"; version="1.0.2"; sha256="076am30ayc16wm3bilznxqzd5806yi7dx5m9yv4w7q90i7imsqk7"; depends=[clisymbols dplyr glue tidyr]; }; tidymodels = derive2 { name="tidymodels"; version="1.1.1"; sha256="1ilmxxmbi9czxwv8n6xajaww9047h34i9vy2dmglj7nqply8wzl0"; depends=[broom cli conflicted dials dplyr ggplot2 hardhat infer modeldata parsnip purrr recipes rlang rsample rstudioapi tibble tidyr tune workflows workflowsets yardstick]; }; @@ -18829,8 +19110,9 @@ in with self; { tidyr = derive2 { name="tidyr"; version="1.3.0"; sha256="178a9sb07rph4mh7cz004ls0g7d4b7jk065m4ycfrlzxcs9jnlwd"; depends=[cli cpp11 dplyr glue lifecycle magrittr purrr rlang stringr tibble tidyselect vctrs]; }; tidyrgee = derive2 { name="tidyrgee"; version="0.1.0"; sha256="0sdjbl4ivjrppg215j1wpcyjlbhn0g7z9cpljvqkwq3mb1abhdfd"; depends=[assertthat crayon dplyr glue lubridate purrr readr reticulate rgee rlang sf stringr tidyr]; }; tidyrules = derive2 { name="tidyrules"; version="0.1.5"; sha256="04y6pnrp132sckjpp9g8yl0z7glcsx9dcfdpa8r27wsc2g491i63"; depends=[assertthat magrittr partykit purrr stringr tibble]; }; + tidysdm = derive2 { name="tidysdm"; version="0.9.2"; sha256="1c0mc35r4qmqfdic9kx6dvah6d9698x8f6n5lasn6irqrrs45jqk"; depends=[DALEX DALEXtra dials dplyr ggplot2 lubridate magrittr maxnet parsnip patchwork recipes rlang rsample sf spatialsample terra tibble tidymodels tune workflows workflowsets yardstick]; }; tidyselect = derive2 { name="tidyselect"; version="1.2.0"; sha256="0fwy4qp3j0ksy15rkrh3588h7wa8c21h0fzx5s762zg34yvjd3ak"; depends=[cli glue lifecycle rlang vctrs withr]; }; - tidyseurat = derive2 { name="tidyseurat"; version="0.7.4"; sha256="1mpb57xsaia9gdjnm8gy4kcpfdxrmw5xm0af15mzd96pg39918pm"; depends=[cli dplyr ellipsis fansi ggplot2 lifecycle magrittr Matrix pillar plotly purrr rlang Seurat SeuratObject stringr tibble tidyr tidyselect ttservice vctrs]; }; + tidyseurat = derive2 { name="tidyseurat"; version="0.7.9"; sha256="0yyzi395lximy1rn06cph1awa31328wy8vmcjpn5fp6dczq00dms"; depends=[cli dplyr ellipsis fansi ggplot2 lifecycle magrittr Matrix pillar plotly purrr rlang Seurat SeuratObject stringr tibble tidyr tidyselect ttservice vctrs]; }; tidysmd = derive2 { name="tidysmd"; version="0.2.0"; sha256="1sbn4x59wdshc0xhxycvkf6ssm3w3pgfl64r8s3m77piara2i0dm"; depends=[dplyr purrr rlang smd tidyr tidyselect]; }; tidysq = derive2 { name="tidysq"; version="1.1.3"; sha256="1k4ws5zymrc93rlh8118xxfgjdwr7g99cyhzjp34abcsip1c3g21"; depends=[checkmate cli crayon dplyr pillar Rcpp testthat tibble vctrs]; }; tidystats = derive2 { name="tidystats"; version="0.6.0"; sha256="1hlybkzx940nrl9pgvcdvvz95kn4pn6y8dpamj91fjx41blyjcsp"; depends=[checkmate dplyr jsonlite purrr readr stringr tibble tidyr]; }; @@ -18839,29 +19121,30 @@ in with self; { tidysynth = derive2 { name="tidysynth"; version="0.2.0"; sha256="1arvjv3w6my47xwrzxrnpb2npskhqb9xmqhszgrxcqa55s1x6p15"; depends=[dplyr forcats ggplot2 kernlab magrittr optimx rgenoud rlang tibble tidyr]; }; tidytable = derive2 { name="tidytable"; version="0.10.2"; sha256="1jl89sbsn5xzb6khrhq1kk84mvnqd2lpiyvsiq6kl6i0lwxpjicn"; depends=[data_table glue lifecycle magrittr pillar rlang tidyselect vctrs]; }; tidytags = derive2 { name="tidytags"; version="1.1.1"; sha256="0x4gv6k9ccs9r6s73xsk25ixwgmz5818s6jpndg0yqczybw3y5dm"; depends=[dplyr googlesheets4 rlang rtweet stringr]; }; - tidyterra = derive2 { name="tidyterra"; version="0.4.0"; sha256="02d6cz7w4vj2zsyrzmmv0wcdrlnp9564yk0qiiwl68hl6zrfb15y"; depends=[cli data_table dplyr ggplot2 magrittr rlang scales sf terra tibble tidyr]; }; + tidyterra = derive2 { name="tidyterra"; version="0.5.1"; sha256="0ipn709sd6znjmzg6p0zlzq1ccjy578jhf11j5ln17ih8jsxr973"; depends=[cli data_table dplyr ggplot2 magrittr rlang scales sf terra tibble tidyr]; }; tidytext = derive2 { name="tidytext"; version="0.4.1"; sha256="05f8209qx1rvddnkl0h05yig09xahs8lqgq9w5dvdiwarji50rsj"; depends=[cli dplyr generics janeaustenr lifecycle Matrix purrr rlang stringr tibble tokenizers vctrs]; }; tidytidbits = derive2 { name="tidytidbits"; version="0.3.2"; sha256="1zbm165bimjag7azhy77zlzqilygybqxz35q4r3d7hi7p6m96w78"; depends=[dplyr extrafont forcats magrittr purrr rlang stringr tibble tidyr tidyselect]; }; tidytlg = derive2 { name="tidytlg"; version="0.1.4"; sha256="0di871am8zplavhkh2kjqazc3nv3cn5dzzff0sgj4hxwhfla1f12"; depends=[assertthat cellranger crayon dplyr forcats ggplot2 glue huxtable magrittr png purrr readxl rlang rstudioapi stringr tibble tidyr tidyselect usethis]; }; - tidytransit = derive2 { name="tidytransit"; version="1.6.0"; sha256="0x3p5vcyj9mzcl7hbnmzwwbbxc8wih7lf0s35i704fj6kbv9rc47"; depends=[data_table digest dplyr geodist gtfsio hms rlang sf]; }; + tidytransit = derive2 { name="tidytransit"; version="1.6.1"; sha256="0n5iy7cpj94r396rf6rzx2n258836rjf7906hrdj58rgc28qhacm"; depends=[data_table digest dplyr geodist gtfsio hms rlang sf]; }; tidytreatment = derive2 { name="tidytreatment"; version="0.2.2"; sha256="04z3afharkqyjk5kk097kpqlrmvq5220bsdlzmbzwl5k56vgxgxx"; depends=[dplyr purrr readr rlang tidybayes tidyr]; }; - tidytree = derive2 { name="tidytree"; version="0.4.5"; sha256="0wllr18ip4vc37pr3qni1vbn68jj6iz5gh1vxdi24438y1gqww6j"; depends=[ape cli dplyr lazyeval magrittr pillar rlang tibble tidyr tidyselect yulab_utils]; }; - tidytuesdayR = derive2 { name="tidytuesdayR"; version="1.0.2"; sha256="00xlbmgg8779ypqcrdgn56lyklqknhh3pmqfc49f84xa5hrkyjfs"; depends=[httr jsonlite lubridate magrittr purrr readr readxl rstudioapi rvest usethis xml2]; }; + tidytree = derive2 { name="tidytree"; version="0.4.6"; sha256="14i2v6ryqw4cd74n8kz4qwwx730wzx4f0rssg5vgm0vjfsx0kafv"; depends=[ape cli dplyr lazyeval magrittr pillar rlang tibble tidyr tidyselect yulab_utils]; }; + tidytuesdayR = derive2 { name="tidytuesdayR"; version="1.0.3"; sha256="0n6pl2n3gv3f1idqfgb5w2pr71za551kgc4whxda4dwzl5ylkc0v"; depends=[httr jsonlite lubridate magrittr purrr readr readxl rstudioapi rvest usethis xml2]; }; tidyverse = derive2 { name="tidyverse"; version="2.0.0"; sha256="1r980y6d4a5brvxwdx41qzi8f3fck36c5l89sd3k4csna09jsg1x"; depends=[broom cli conflicted dbplyr dplyr dtplyr forcats ggplot2 googledrive googlesheets4 haven hms httr jsonlite lubridate magrittr modelr pillar purrr ragg readr readxl reprex rlang rstudioapi rvest stringr tibble tidyr xml2]; }; - tidyvpc = derive2 { name="tidyvpc"; version="1.4.0"; sha256="1gcid4n21nkm7z6a91vnj08rzjhzvi9r4nvrgawad6s1grika8q9"; depends=[classInt data_table fastDummies ggplot2 magrittr mgcv quantreg rlang]; }; + tidyvpc = derive2 { name="tidyvpc"; version="1.5.0"; sha256="1rxac4zbv3ar3s1kv54zf61nnna32mahhml88yb1h6w3r3yyyzqz"; depends=[classInt data_table egg fastDummies ggplot2 magrittr mgcv quantreg rlang]; }; tidywikidatar = derive2 { name="tidywikidatar"; version="0.5.7"; sha256="0lpdg4iaqis3hnklf3qm0xjan0pdmpkwgc4zm6hl4b5m1zr4s2fx"; depends=[DBI dplyr fs glue jsonlite magrittr pool progress purrr rlang RSQLite stringr tibble tidyr usethis vctrs WikidataQueryServiceR WikidataR WikipediR]; }; - tidyxl = derive2 { name="tidyxl"; version="1.0.8"; sha256="05hkjwlv88ln0psqk5r8p2i4j6g3c3yfw2wmm73wcylcv33lh79h"; depends=[piton Rcpp]; }; - tiff = derive2 { name="tiff"; version="0.1-11"; sha256="0xgc7vyndxxahfhc2qqzmwi56bnfyl0pn72l820jz5sd24aymhxq"; depends=[]; }; + tidyxl = derive2 { name="tidyxl"; version="1.0.10"; sha256="1y8bbll3mhxb2drdraymblzw8gjxym2lrj90fg2z75rn00lnwf8f"; depends=[piton Rcpp]; }; + tiff = derive2 { name="tiff"; version="0.1-12"; sha256="0p41irri0nxg9mm06g8jp5zqssv80g5zg0iifrr7ancjkxqww46z"; depends=[]; }; tigerhitteR = derive2 { name="tigerhitteR"; version="1.1.0"; sha256="0inyi12lf8bn7nbklf2rjixk6wrgrjcp8njv7knai4dgvv7v0rfa"; depends=[Hmisc magrittr openxlsx zoo]; }; tigers = derive2 { name="tigers"; version="0.1-1"; sha256="1skwg878zwi1j2k70m0m9njq8zpj799y4526kvqmd17xin5yxggk"; depends=[]; }; tigerstats = derive2 { name="tigerstats"; version="0.3.2"; sha256="0p5z4qh0aznj03rnhk4lpqfkwnsa5zgvj51rddkzligg9zx73xwl"; depends=[abd ggplot2 lattice manipulate MASS mosaic mosaicData rlang]; }; tigger = derive2 { name="tigger"; version="1.1.0"; sha256="02q5ggyl4iy4xx07v0mikf9hkbac0iwbd02rkzafrgjbxfm8mvfa"; depends=[alakazam doParallel dplyr foreach ggplot2 gridExtra gtools iterators lazyeval rlang stringi tidyr]; }; tightClust = derive2 { name="tightClust"; version="1.1"; sha256="0vqkp2g6z8y3b6dhzglmacjhf2qi1sg80kb941mwfafin2k40zbm"; depends=[]; }; + tightenBlock = derive2 { name="tightenBlock"; version="0.1.7"; sha256="0ic4zw6c35sjhcni9x9qlaw03cr48fka64p30kx4j51lkm6ynaxh"; depends=[MASS rcbalance]; }; tigreBrowserWriter = derive2 { name="tigreBrowserWriter"; version="0.1.5"; sha256="0izgx1khci6qc6pz85dxj75kzxvpr30l0vhcv9476jrcbwqs4k8m"; depends=[DBI RSQLite]; }; tigris = derive2 { name="tigris"; version="2.0.4"; sha256="1jhz18ysr26fgm89ky39fqiaxx7spadysishyaml5f2pbam13r27"; depends=[dplyr httr magrittr rappdirs sf stringr uuid]; }; tiktokadsR = derive2 { name="tiktokadsR"; version="0.1.0"; sha256="17x6nxp88iji376qhvvkgxyfcbxz9bvfgv9kmhiznlhq64srdjfs"; depends=[jsonlite]; }; - tikzDevice = derive2 { name="tikzDevice"; version="0.12.5"; sha256="1v2swv6xs8vijwkqd5cjc3s4hyigj7qa31h31wmnrd5yplshq1kx"; depends=[filehash png]; }; - tiledb = derive2 { name="tiledb"; version="0.21.1"; sha256="0s7m7n41a78n8pgcqdk9zal87212p0f1m79dfwrjrp6i125s5zwm"; depends=[nanotime Rcpp RcppInt64 spdl]; }; + tikzDevice = derive2 { name="tikzDevice"; version="0.12.6"; sha256="1b04a3hmfx0r5iw6836cb9pvqspijb2dz17vc40n9jwsr9ij3nq4"; depends=[filehash png]; }; + tiledb = derive2 { name="tiledb"; version="0.23.0"; sha256="0bdl3p16ngqi127dz965i38lfdii0g8wmg3db328lzzrnf44lqfs"; depends=[nanotime Rcpp RcppInt64 spdl]; }; tilegramsR = derive2 { name="tilegramsR"; version="0.2.0"; sha256="11cnyvlghg8z7lr9ahzsjpyjrqnxqs77wdcydqvavrsqj745xvi2"; depends=[sf sp]; }; tilemaps = derive2 { name="tilemaps"; version="0.2.0"; sha256="06pwwlndb7nvw2b0h0fak3vnpbi11mxsby43qm9ng3k3sqwrqjz2"; depends=[clue ggplot2 igraph lwgeom sf smoothr]; }; tiler = derive2 { name="tiler"; version="0.3.1"; sha256="09xxfkbgjd9x27fjkbk1ady7sxz9lqkmaw5027xgakn65g9vmssz"; depends=[png raster sp]; }; @@ -18869,23 +19152,25 @@ in with self; { timbeR = derive2 { name="timbeR"; version="2.0.1"; sha256="01lpx4pk22k9j4sbbhr9z7r6spfdrfazpxsyp7cxndrswa8m83zq"; depends=[cowplot dplyr ggplot2 magrittr miniUI shiny tibble tidyr]; }; timbr = derive2 { name="timbr"; version="0.2.2"; sha256="1bz368s1iryxrrxsvq2sbzlm2cnrfqxafzvbsgm6smb3skwyp3sb"; depends=[cli dplyr lifecycle memoise pillar purrr rlang tibble tidygraph vctrs]; }; time_slots = derive2 { name="time.slots"; version="0.2.0"; sha256="04qh8cgk3ixvvc67m2hal935m5kisq2n67cvjmsg1frz1bf2yvld"; depends=[dplyr ggfittext ggplot2 lubridate scales]; }; - timeDate = derive2 { name="timeDate"; version="4022.108"; sha256="1vyfpz2ac43c0s6a4j4d0xfc430mwgw3syf03xszzggnw97rp555"; depends=[]; }; + timeDF = derive2 { name="timeDF"; version="0.9.0"; sha256="1civib75j61b5hw6jm0ga15y9q67mhd927a5jhk9wik7sfxrd7ll"; depends=[Rcpp]; }; + timeDate = derive2 { name="timeDate"; version="4032.109"; sha256="0n5rzi3bb1wjpqcgpxcagjy815vy8ksjzpkkjzs3333yljyl2a20"; depends=[]; }; timeLineGraphics = derive2 { name="timeLineGraphics"; version="1.0"; sha256="06i2palpc19g0480d53232fj4jd5j0brhdkmj5vcr6p58qsvhyhm"; depends=[berryFunctions magick pdftools R2HTML]; }; timeR = derive2 { name="timeR"; version="1.2.0"; sha256="0lkx2ilbzq29w1c9ssya4f0za0sj7y30y9ml4v3zc21c1la0b6vi"; depends=[lubridate R6]; }; timeROC = derive2 { name="timeROC"; version="0.4"; sha256="1qxijg7hazc8bifwj2254ig2p3cbrp9p0bsyhhh3aikf1rg113v1"; depends=[mvtnorm pec]; }; timeSeq = derive2 { name="timeSeq"; version="1.0.4"; sha256="0m59g12dmnwpmwjmyb9x6z53x3gjmxcaxqva2dlbazsqkbzgaayp"; depends=[gss lattice mgcv pheatmap reshape]; }; - timeSeries = derive2 { name="timeSeries"; version="4031.107"; sha256="0hmmv8ml2ryw1zkbk55f85ml664as8l0qksj9h1335zn58s6lf44"; depends=[timeDate]; }; + timeSeries = derive2 { name="timeSeries"; version="4032.108"; sha256="1mcx059f9hnzgcxcil7hvgp9hz7gancj4gjgpdlpa4by77nwygpd"; depends=[timeDate]; }; timechange = derive2 { name="timechange"; version="0.2.0"; sha256="1wgpab9dvmvkfb1p1arj0knb8qal9hazbhx5jkpxl8r10l420q1x"; depends=[cpp11]; }; timedelay = derive2 { name="timedelay"; version="1.0.11"; sha256="0hr5a2m621ybvl4qyx1xgwzviszj4ccvb149yclds9z87r5h2gm4"; depends=[MASS mvtnorm]; }; timedeppar = derive2 { name="timedeppar"; version="1.0.3"; sha256="0cg3akp5clyh0jm2808n4glmvfb8pjfsrpiw8724q7zsx3mfhgff"; depends=[mvtnorm]; }; timelineS = derive2 { name="timelineS"; version="0.1.1"; sha256="076w8ckzzl59bc1gnwjgdwynnz86320hyfmzb0k26hl3k13jlmxs"; depends=[dplyr ggplot2 lubridate magrittr]; }; timeordered = derive2 { name="timeordered"; version="1.0.0"; sha256="0gcf2mvqzqrqxf7qqfhvxb42y32vxaz5nc29vnyig1lh6bnywkhq"; depends=[igraph plyr]; }; timeperiodsR = derive2 { name="timeperiodsR"; version="0.7.1"; sha256="0fb9xwpdg38nnghjarlp2svjs225ng3h8p7vxnsy7rh0g3qck450"; depends=[lubridate]; }; - timeplyr = derive2 { name="timeplyr"; version="0.2.0"; sha256="1pdvs21c3bqpyrks6smdlxmg92n04csnja7kbg6w3fyvxkifj2fq"; depends=[collapse data_table dplyr ggplot2 lubridate pillar Rcpp rlang stringr tidyselect timechange vctrs]; }; + timeplyr = derive2 { name="timeplyr"; version="0.5.0"; sha256="11wk68z8jnpff6is2avlwn60xq11a39y7c9jx6qq26sffidh3ihh"; depends=[collapse cpp11 cppdoubles data_table dplyr ggplot2 lubridate pillar rlang stringr tidyselect timechange vctrs]; }; timereg = derive2 { name="timereg"; version="2.0.5"; sha256="1vzphh7hfkc65r61wms1dh58i3ng7340whqkw947yb4nyvmdvld0"; depends=[lava numDeriv survival]; }; timeseriesdb = derive2 { name="timeseriesdb"; version="1.0.0-1.1.2"; sha256="17j1nxpgbfbzmfc6zrgcw68ri9ncslic9qdkxkdpfr2gi1w61bpc"; depends=[data_table DBI jsonlite RPostgres xts]; }; - timetk = derive2 { name="timetk"; version="2.8.4"; sha256="1ww5nhyvb4ysv0pbbhx8hlalm631gfyv2dvgz4f8f1926h6zy3k6"; depends=[anytime assertthat dplyr forcats forecast generics ggplot2 hms lubridate padr plotly purrr readr recipes rlang rsample slider stringi stringr tibble tidymodels tidyr tidyselect timeDate timeSeries tsfeatures xts zoo]; }; + timetk = derive2 { name="timetk"; version="2.9.0"; sha256="1f6v6gipxi0ydj6fcckk6hgxdx8cfj0f1fyyf092lqx9a7flfp3g"; depends=[anytime dplyr forcats forecast generics ggplot2 hms lubridate padr plotly purrr readr recipes rlang rsample slider stringi stringr tibble tidyr tidyselect timeDate tsfeatures xts zoo]; }; timetools = derive2 { name="timetools"; version="1.15.3"; sha256="0bhipgygbb76m4byl58ndbjqj88rxbwrar0dmgw842f1yp867bc5"; depends=[]; }; + timevarcorr = derive2 { name="timevarcorr"; version="0.1.1"; sha256="1i17p351y1jma0gp2lp6y4j1mxyg9fv5cyx0fvcpvk1lynfalflv"; depends=[lpridge]; }; timevis = derive2 { name="timevis"; version="2.1.0"; sha256="16b2iwf1lrw5b8am8c5xqkyg6inwac09qgbp0yigf3isd3qqs829"; depends=[htmltools htmlwidgets jsonlite magrittr rmarkdown shiny]; }; timsac = derive2 { name="timsac"; version="1.3.8-4"; sha256="0gmqncz114gar0j7lahvcsasmdva2dbl2ka420hlf63f51c2dkjk"; depends=[]; }; tinkr = derive2 { name="tinkr"; version="0.2.0"; sha256="068ym4a0gwayd6a86zq6428j8gkmvxgm7hk0crbjp0lp9cz85dzq"; depends=[commonmark glue magrittr purrr R6 xml2 xslt yaml]; }; @@ -18894,14 +19179,15 @@ in with self; { tinter = derive2 { name="tinter"; version="0.1.0"; sha256="02hfw2720qn70x0piahm8cy2ajsb5bqapr4vyvknm4v1yka1wmw3"; depends=[chk]; }; tinyProject = derive2 { name="tinyProject"; version="0.6.1"; sha256="0cflnfp5mib3j1y3n5yvi867h5a7z6xr6163gq9y9b6nrl2skxfk"; depends=[brew R_utils]; }; tinyarray = derive2 { name="tinyarray"; version="2.3.1"; sha256="1cwywxz0ndaw6vpgs89ywya6p00q5ngchm5aky8nhqvjipmibsk8"; depends=[BiocManager clusterProfiler dplyr ggplot2 limma patchwork pheatmap stringr survival survminer tibble]; }; - tinycodet = derive2 { name="tinycodet"; version="0.1.0.6"; sha256="0458kjvmid6cjj83srb81agwmq4vcd2r4pfnpdpkvvw3n0bbc698"; depends=[stringi]; }; + tinycodet = derive2 { name="tinycodet"; version="0.3.0"; sha256="0rrmml9mpzdbgy0vshxik33cjsf0hdlcbpjqvwf2nvn2rf9g1vnc"; depends=[stringi]; }; tinylabels = derive2 { name="tinylabels"; version="0.2.4"; sha256="01pvnirma3wzfqnnz8zvyqajjyysjm3sd6813bgdhz199lcg7hhz"; depends=[]; }; tinyscholar = derive2 { name="tinyscholar"; version="0.1.7"; sha256="0cd9xbm1gk0v241fqa42hly40vkqb6hcvi8jp9iqq8sgmrs33adh"; depends=[curl dplyr ggplot2 gt jsonlite magrittr purrr R_utils rlang rvest stringr xml2]; }; tinysnapshot = derive2 { name="tinysnapshot"; version="0.0.3"; sha256="1f8j5v9j3n6nv9lsp05jfjq8hph91lx61vbqmw7iizqcwgqfhxbx"; depends=[diffobj magick tinytest]; }; tinyspotifyr = derive2 { name="tinyspotifyr"; version="0.2.2"; sha256="19nicp1ml73lylja2np52rcc070maxm9286fjm7bfx3zsblxmakc"; depends=[httr jsonlite]; }; tinytest = derive2 { name="tinytest"; version="1.4.1"; sha256="0x0w1fiqd98vmpz8yrp9ig0ry1wfr16g6bkjzd2a8sq9gn417z7n"; depends=[]; }; tinytest2JUnit = derive2 { name="tinytest2JUnit"; version="1.0.1"; sha256="0m49plrxp2cglj2h37kfr2wknspxdzv4331vcxjf27hm8wk17wwq"; depends=[]; }; - tinytex = derive2 { name="tinytex"; version="0.48"; sha256="15bnb4fxdzapgj9ws3rfbcxwdzwbq8h5yy4d1db0m9c1lygrh2qx"; depends=[xfun]; }; + tinytex = derive2 { name="tinytex"; version="0.49"; sha256="0i9icscy5n6p6w3f4v2z3cznywrrv2l6xyyhb0k1fpa4cpn6j4cl"; depends=[xfun]; }; + tinythemes = derive2 { name="tinythemes"; version="0.0.1"; sha256="19dsayqi762l1dj5valmlgsq1hjy4s2znrnln9h98w17wv629zhg"; depends=[ggplot2]; }; tinytiger = derive2 { name="tinytiger"; version="0.0.8"; sha256="1ixbq9qfv0jlwqca8anng2z9dykpsv46vyrkc7p82a55mx1x8vbg"; depends=[cli curl glue rlang sf]; }; tip = derive2 { name="tip"; version="0.1.0"; sha256="11khhkszd5a81q0h6acx5rvp1k97qj1srcvz2jilwf3v6nrz7daz"; depends=[changepoint doParallel foreach GGally ggplot2 igraph LaplacesDemon mniw network rlang]; }; tipa = derive2 { name="tipa"; version="1.0.8"; sha256="0w637cmg82h758kayf17z70kls7gs1h44b1ridd311j0yz4f5x6a"; depends=[optimx]; }; @@ -18943,9 +19229,10 @@ in with self; { tmt = derive2 { name="tmt"; version="0.3.1-2"; sha256="02b7q5qcpa0wmxilqhzsy6mammhwa2sm3kjzwvigm3jc801z90h7"; depends=[ggplot2 Rcpp]; }; tmvmixnorm = derive2 { name="tmvmixnorm"; version="1.1.1"; sha256="0i1g3598d43azyy1bsrvkjybqa5cd991fpmfqi5wv5703zaha2fj"; depends=[MASS]; }; tmvnsim = derive2 { name="tmvnsim"; version="1.0-2"; sha256="03xsvsg9bqvgl98ywid3h91mmlhax5s6wvmypp3hq91vmc5kvxlp"; depends=[]; }; - tmvtnorm = derive2 { name="tmvtnorm"; version="1.5"; sha256="1zk0ak71wlk9d0lkwn6q28sdz4y2k7sgx021vdprlcg4vimn0yhw"; depends=[gmm Matrix mvtnorm]; }; + tmvtnorm = derive2 { name="tmvtnorm"; version="1.6"; sha256="1fhvisddn3x4li2q12c3hss0cj735c0iq32c9cw646ni619jr6rd"; depends=[gmm Matrix mvtnorm]; }; tmvtnsim = derive2 { name="tmvtnsim"; version="0.1.3"; sha256="15nhk21x9yklpxnqmd6qblmh0g4p9065hkvy26gd8ppaz19law5s"; depends=[Rcpp RcppArmadillo]; }; tnet = derive2 { name="tnet"; version="3.0.16"; sha256="0922y9zb64zazl2irwfxxbghkgcwi2q57gylpiaxgmj4q6lc62l9"; depends=[igraph survival]; }; + tnl_Test = derive2 { name="tnl.Test"; version="0.1.0"; sha256="13yhxsj33lzbd5mbrwznilim5zsqcnj9y9c1qfh7c3ml2pa3s2vp"; depends=[partitions plyr]; }; toOrdinal = derive2 { name="toOrdinal"; version="1.3-0.0"; sha256="1zfx91024dyafkfyjsm2829qsqkz57g6p5v47lp2x0ykrwpdbm37"; depends=[crayon testthat]; }; toastui = derive2 { name="toastui"; version="0.3.0"; sha256="1v535ml9m9sz2pviv3983lnini147rfsz56s4hfnq2ydb9f1vmay"; depends=[htmltools htmlwidgets magrittr phosphoricons rlang shiny shinyWidgets]; }; todor = derive2 { name="todor"; version="0.1.2"; sha256="1ncg88wh9l2mja5w53ry2b19sa5x9m6cnkvw8lszbmc92idpspig"; depends=[R_utils rex rstudioapi stringr]; }; @@ -18964,7 +19251,7 @@ in with self; { topChef = derive2 { name="topChef"; version="0.1.0"; sha256="13gqifd3l47pand0bf0993x6fhm9vgj3l95lkc055rq3ffzpdyl4"; depends=[dplyr tidyr]; }; topdowntimeratio = derive2 { name="topdowntimeratio"; version="0.1.0"; sha256="0dbn9hs3fsmwkjipk5wyl5wj02hv56ipcr9pmj068c4y6rm3qiqv"; depends=[data_table geodist lubridate magrittr]; }; topicdoc = derive2 { name="topicdoc"; version="0.1.1"; sha256="195yly7r14cpavbbr02iq3lqfb0gcx5cngfigivnid1rk45wv7bz"; depends=[slam topicmodels]; }; - topicmodels = derive2 { name="topicmodels"; version="0.2-14"; sha256="1jaw9fjcl5ac0l57lack9gswqx2wzid1gkwsksyr4dlpxbw0zm5c"; depends=[modeltools slam tm]; }; + topicmodels = derive2 { name="topicmodels"; version="0.2-15"; sha256="1l3pmz6n0sd57bf3d16m9766285d2pmndmv36rf5pffpwiw0zdbi"; depends=[modeltools slam tm]; }; topicmodels_etm = derive2 { name="topicmodels.etm"; version="0.1.0"; sha256="06w2n1gswv268sgzm0nz14mmrahibnsgcxh7hcks3bmq9r8d9ba4"; depends=[Matrix torch]; }; topmodel = derive2 { name="topmodel"; version="0.7.5"; sha256="1bhzjy2ja4953a5wx8s3cz3v0ip6lym193faqxxabxjklgbsp416"; depends=[]; }; topoDistance = derive2 { name="topoDistance"; version="1.0.2"; sha256="1n6108giihc4aa1871m558s2z96m766ysvhak5b6zg1bnvpdj0l8"; depends=[gdistance plotly raster RColorBrewer scales sp]; }; @@ -18974,7 +19261,7 @@ in with self; { toprdata = derive2 { name="toprdata"; version="1.0.2"; sha256="1zn8w1c74nxm67xzk556zirhnfyi82wk34amy5a869a15lwchhaz"; depends=[]; }; topsis = derive2 { name="topsis"; version="1.0"; sha256="056cgi684qy2chh1rvhgkxwhfv9nnfd7dfzc05m24gy2wyypgxj3"; depends=[]; }; tor = derive2 { name="tor"; version="1.1.2"; sha256="1s34hzw3a4cm9gk85fcxgxwmn2xc7njs1iw1snd91id3gdl6vppx"; depends=[fs readr rlang tibble]; }; - torch = derive2 { name="torch"; version="0.11.0"; sha256="04hvr3f4rgnxxc42fiv58kpyld4aagj6ambhw769v3bfz7s2v879"; depends=[bit64 callr cli coro desc ellipsis glue magrittr R6 Rcpp rlang withr]; }; + torch = derive2 { name="torch"; version="0.12.0"; sha256="024c8szg3xa2zrl5406jx3bmazbjwp2f07ja7m61ja0dr3z7lvbq"; depends=[bit64 callr cli coro desc ellipsis glue jsonlite magrittr R6 Rcpp rlang safetensors withr]; }; torchaudio = derive2 { name="torchaudio"; version="0.3.1"; sha256="1zn9z2z2yv1xjmpf5xcyxachmmbwk2g0y3nipvjgpwbqkjr7p9y6"; depends=[av fs glue rlang torch]; }; torchdatasets = derive2 { name="torchdatasets"; version="0.3.0"; sha256="1mq87sgy9v1526iy03zpslkjxx7379q6x9dqs0nslvvfwk9sry4q"; depends=[fs pins stringr torch torchvision withr zip]; }; torchopt = derive2 { name="torchopt"; version="0.1.4"; sha256="0qcygp8jpx2192nfcki5mqb9gi4gzlc68yf6in8y88lvy8dj8ll2"; depends=[torch]; }; @@ -18994,10 +19281,10 @@ in with self; { tpAUC = derive2 { name="tpAUC"; version="2.1.1"; sha256="0wix9qwcidj7xfqhh7bmrpnadd9qlkvg3515gaamdxkjbz2kyydc"; depends=[pROC]; }; tpc = derive2 { name="tpc"; version="1.0"; sha256="0zkls2vf8j1rq5ryn4w295a6gcy57vr3zghyck8jwgl9pd5zcc4x"; depends=[graph pcalg]; }; tpfp = derive2 { name="tpfp"; version="0.0.1"; sha256="0vm5qssaanvi0sck2hj1qgjra89a42i6nvzbva5z0aj2hkd5h4vh"; depends=[knitr readxl xlsx]; }; - tpn = derive2 { name="tpn"; version="1.7"; sha256="1n172jl4pglp771kir1h8f9rynssw7qqjkvqhg98yk5vrf0x1cca"; depends=[moments pracma skewMLRM VGAM]; }; + tpn = derive2 { name="tpn"; version="1.8"; sha256="1jhddrgkzlwmljqzy4hgday4ydyc76fskk2ahnz9x2abfm21dx7g"; depends=[moments pracma RBE3 skewMLRM VGAM]; }; tpr = derive2 { name="tpr"; version="0.3-3"; sha256="13xi4a9pdhqyg56jcimcqxfz3zcpzyhb6y7nh73dr09w8picq6gj"; depends=[lgtdl]; }; tqk = derive2 { name="tqk"; version="0.1.8"; sha256="1l4zsmfnpzcn34pjwzfr511qn7y03bymdak4pcysrj4s49xgx4qj"; depends=[dplyr httr jsonlite magrittr tibble]; }; - tracee = derive2 { name="tracee"; version="0.0.3"; sha256="1hv4ymi1p76k2b3x4s6qs53xwda3ybkwbdpnlhfgz7fryvy483r5"; depends=[data_table flextable ggplot2 gridExtra NMdata]; }; + tracee = derive2 { name="tracee"; version="0.0.4"; sha256="0ny6769zdl2i5y3fy3ysww91i5s0n86rcciaalryg6ms18989x0r"; depends=[data_table flextable ggplot2 gridExtra NMdata]; }; tracer = derive2 { name="tracer"; version="1.0.0"; sha256="1jdh4ljcz7d0w2y5miggqkvv397jdx7fn108hbjw93af2gnh698q"; depends=[clisymbols crayon prettycode]; }; tracerer = derive2 { name="tracerer"; version="2.2.3"; sha256="0jqf0p0j0g4naspgg9k7jxslwcdqwv7mxca41wyffrgglgya8rci"; depends=[jsonlite Rcpp testit]; }; tracheideR = derive2 { name="tracheideR"; version="0.1.1"; sha256="1x1jwzgs2aqb3k17mm9mhfhnbwcmilhkjaz9rl40rcg84xjqdrpl"; depends=[tgram]; }; @@ -19007,21 +19294,20 @@ in with self; { trackdown = derive2 { name="trackdown"; version="1.1.1"; sha256="1l8mqdfpdf25vyibxqcqhyip6aqllb9riz2v6w4k1rfc8b9dl07f"; depends=[cli googledrive rmarkdown]; }; trackeR = derive2 { name="trackeR"; version="1.5.2"; sha256="1f3giz6naxxyicgy9v0391ang43srwhy9zbiv4zmlc8i9v05b57i"; depends=[fda foreach ggmap ggplot2 ggridges gridExtra gtable jsonlite leaflet raster RSQLite scam sp xml2 zoo]; }; trackeRapp = derive2 { name="trackeRapp"; version="1.2"; sha256="1y6n9hgzybz5860qpzj9rdb9yl4k6b9h13d91fqn3qarpnx9n5qr"; depends=[changepoint colorspace DT foreach mapdeck mgcv plotly sf shiny shinydashboard shinyjs shinyWidgets trackeR V8 zoo]; }; - trackter = derive2 { name="trackter"; version="0.1.1"; sha256="11rk53w0y9p0az6ydiq3vy50j1pj4p4cml5dqabrpcgfz4icjkrs"; depends=[data_table dplyr EBImage features ggplot2 jpeg pastecs plyr raster zoo]; }; tractor_base = derive2 { name="tractor.base"; version="3.3.5.1"; sha256="0fxbzbhpi6l55m14nmww8y3kdxgchzj4mw1yf4xkm2y6s68phvgc"; depends=[ore reportr RNifti shades]; }; trade = derive2 { name="trade"; version="0.8.1"; sha256="198qd3rnw5yh6i2nxsi3d4dvkrpaq37j881ixnabjl496pkkzdnx"; depends=[antitrust]; }; tradestatistics = derive2 { name="tradestatistics"; version="4.5.0"; sha256="0s6v5xfcasrpdqvpxi8nbw9v4w8yvnjwxz21pa9321pchrhw4v6p"; depends=[crul data_table digest jsonlite memoise]; }; trafo = derive2 { name="trafo"; version="1.0.1"; sha256="0gq3snjpkw0ncny7pkfi686qkgdhd8id73jxjk3chhqf5mzrrsbc"; depends=[FNN lmtest moments pryr]; }; trainR = derive2 { name="trainR"; version="0.0.1"; sha256="0wmxhw8yxkxpw08jma3r0zy7dhsrkbh5wjvd3izp5gf9dn9533cd"; depends=[dplyr glue lubridate magrittr purrr RCurl stringr tibble tidyr usethis xml2]; }; - traineR = derive2 { name="traineR"; version="2.1.0"; sha256="0bk7hrz9bfn9j3hj05zhq6zm9q2nrw5pcrq8yd54ys2135hhqwaj"; depends=[ada adabag dplyr e1071 gbm ggplot2 glmnet kknn MASS neuralnet nnet randomForest ROCR rpart stringr xgboost]; }; + traineR = derive2 { name="traineR"; version="2.2.0"; sha256="0a07l38k18x97yzqh8qcaza4fac0r2ngf3588v3nrvhcm3wz70az"; depends=[ada adabag dplyr e1071 gbm ggplot2 glmnet kknn MASS neuralnet nnet randomForest ROCR rpart stringr xgboost]; }; traipse = derive2 { name="traipse"; version="0.3.0"; sha256="1ln0l8dkslj8pf0h5g5pj5iwy9x05nfkp1x36dxbi5iab88cv76w"; depends=[geodist geosphere magrittr]; }; traits = derive2 { name="traits"; version="0.5.0"; sha256="04s2523wkbjqxpwllvcy7ikyfri5gldgnynjswsxdy0k945wacvz"; depends=[crul data_table hoardr httr jsonlite readr rvest taxize tibble xml2]; }; traitstrap = derive2 { name="traitstrap"; version="0.1.0"; sha256="1yq4ngpqizlcmbcypdbsxrc9kixm6b44zimyijl7404bzz6hbs5a"; depends=[dplyr e1071 fitdistrplus ggplot2 glue purrr rlang stringr tibble tidyr]; }; - traj = derive2 { name="traj"; version="1.3.1"; sha256="1v6p31q4c9k5ipa0rysqd3xrw5f7ydvp91r1d0jp17zdgz58vfpd"; depends=[cluster NbClust pastecs psych]; }; + traj = derive2 { name="traj"; version="2.0.1"; sha256="049vllrxsgp1hsjh8w79nybmcl40wlnjp5bxdkjrc0r3yi8mvc0v"; depends=[cluster psych]; }; trajeR = derive2 { name="trajeR"; version="0.9.0.5"; sha256="1zy3hg1m1a5dpx494mlb72vfpng5892dcginv6rwxc2c1ggv6z86"; depends=[capushe MASS minpack_lm numDeriv Rcpp RcppArmadillo ucminf]; }; - trajectories = derive2 { name="trajectories"; version="0.2-7"; sha256="09qz6yc21q54ivjnkh4rpm5m3j81h1vabjvrp9fwrcswj8y8k0y8"; depends=[lattice sp spacetime zoo]; }; - trajr = derive2 { name="trajr"; version="1.5.0"; sha256="0xfgqdck4dll9vc4gh2sql29r6hkdpizwcxwwaixxzvsi12khwf7"; depends=[plotrix signal]; }; - tram = derive2 { name="tram"; version="1.0-0"; sha256="1bzrr6zmiaaq68mmah5wn0srivi2aprgchpkk2gfb3dmcbidmrvm"; depends=[basefun Formula Matrix mlt multcomp mvtnorm sandwich survival variables]; }; + trajectories = derive2 { name="trajectories"; version="0.2-8"; sha256="0rs4jlj2w9byvx47kvp4aayh485ck2xra3pkpjl95dyk8b0xpl4d"; depends=[lattice sp spacetime zoo]; }; + trajr = derive2 { name="trajr"; version="1.5.1"; sha256="0sc0lyyp6qw71l6p2d6g5iszkcqpps6k2vb4798j76cl72fw5b52"; depends=[plotrix signal]; }; + tram = derive2 { name="tram"; version="1.0-1"; sha256="0d6k8zycsjv47wkvfqrqwp9a7qwzw9946wavljq8lg0ni22185qv"; depends=[basefun Formula Matrix mlt multcomp mvtnorm sandwich survival variables]; }; tramME = derive2 { name="tramME"; version="1.0.5"; sha256="1rfs38v0w2rxldxngbc1d6118cjnc8ad4zn2csqk8bg882b1yn18"; depends=[alabama basefun coneproj lme4 MASS Matrix mgcv mlt mvtnorm nlme numDeriv RcppEigen TMB tram variables]; }; tramicp = derive2 { name="tramicp"; version="0.0-1"; sha256="1i6j9iqrwfq3y6b8vf90s8bgnzcl1g39lrcbspxrndvz4mgdbavv"; depends=[basefun coin cotram dHSIC MASS mlt multcomp ranger sandwich survival tram variables]; }; tramnet = derive2 { name="tramnet"; version="0.0-8"; sha256="19hx2hn8m5abfzp4sm0myhxlx9hp2rl7dry5izxsfjjls3h8z1n4"; depends=[basefun CVXR lhs mlr mlrMBO mlt ParamHelpers sandwich smoof tram]; }; @@ -19030,9 +19316,9 @@ in with self; { tranSurv = derive2 { name="tranSurv"; version="1.2.2"; sha256="17rvzjcn76z5niw1jappiadbkf66a9x0m7p3251lgb7qrnvpx3gk"; depends=[rootSolve SQUAREM survival truncSP]; }; transPlotR = derive2 { name="transPlotR"; version="0.0.2"; sha256="0xk7lqv4nf6565msschz72mqfdmpvvfylv0acj9qlg6jsanfxii7"; depends=[cowplot dplyr geomtextpath ggarchery ggplot2 magrittr purrr tidyverse]; }; transfR = derive2 { name="transfR"; version="1.0.11"; sha256="1qmkqn0gl4d6c0j1f07nmlv1gxh6in7d21dlp80ilmnaqyhb1fnj"; depends=[doParallel foreach Rdpack sf stars units]; }; - transforEmotion = derive2 { name="transforEmotion"; version="0.1.1"; sha256="0lnmgbsh26mazx0g1s0jxg3jk1a6vw3bsaw07viv9kx3rdf6wc46"; depends=[dplyr LSAfun osfr pbapply remotes reticulate]; }; + transforEmotion = derive2 { name="transforEmotion"; version="0.1.4"; sha256="0vm6jls2whqkr1x7gwa9h6x1phng908z9qyfmpjr6nrykkwmk5va"; depends=[dplyr googledrive LSAfun Matrix pbapply remotes reticulate]; }; transform_hazards = derive2 { name="transform.hazards"; version="0.1.1"; sha256="00nl2pd4hkdgrgpi854pjz7nxx3vxsa9panw69hiksg301afz1hj"; depends=[]; }; - transformer = derive2 { name="transformer"; version="0.1.0"; sha256="0nvgcw72mcmj3wy3bf72zahyzs3ir5f154hz03ybk9dydgfkxj8w"; depends=[attention]; }; + transformer = derive2 { name="transformer"; version="0.2.0"; sha256="0zypj0dnbknr3mcl5iv4z1cw0mb5463n6rd8ahly6nwnfiwxbqvi"; depends=[attention]; }; transformmos = derive2 { name="transformmos"; version="0.1.0"; sha256="1hsp399cj6cnsysb4hm4ra075qm2fxkjhyq16m3nai51fvzkak0p"; depends=[]; }; transformr = derive2 { name="transformr"; version="0.1.4"; sha256="0h0zcsqyjxkc5g6zg79h7nq5z2rzfj93i1livwrkjj622y1br4y1"; depends=[cpp11 lpSolve rlang sf tweenr vctrs]; }; translate_logit = derive2 { name="translate.logit"; version="1.0"; sha256="1klh4aisip0q0899lbybniy38f346m66k5g929l444f26dq9snw0"; depends=[nleqslv nnet]; }; @@ -19041,12 +19327,13 @@ in with self; { transmem = derive2 { name="transmem"; version="0.1.1"; sha256="1a3c5ddmh9k4f80rbk363s7rkx30qhk9ssmf7xg7rr0lwxphahf3"; depends=[cmna ggformula ggplot2 plot3D]; }; transplantr = derive2 { name="transplantr"; version="0.2.0"; sha256="1kzi8rvswsmibxqnhqd1j42y848si6cxd8hpvwi55y8s4hcylw0y"; depends=[]; }; transport = derive2 { name="transport"; version="0.14-6"; sha256="0806w66na5nj8v8czrjqnyhfz8r76rhx8jn76n5p9j7pgmbrn4f6"; depends=[data_table Rcpp RcppEigen]; }; - transreg = derive2 { name="transreg"; version="1.0.0"; sha256="0691gn80fwlkf48m9mrjj76ylllayn3aj03lr48y361bf4qpg56c"; depends=[glmnet joinet starnet]; }; + transreg = derive2 { name="transreg"; version="1.0.2"; sha256="1kh106kgnjliw84p219g317img4aaas8s2bm5x6pakvswqf2qjxw"; depends=[glmnet joinet starnet]; }; transx = derive2 { name="transx"; version="0.0.1"; sha256="1xx934w4fhk2nwm5h6lf4irj83wsfp8lbplzcha5rnc7aka8pn3v"; depends=[rlang]; }; trapezoid = derive2 { name="trapezoid"; version="2.0-2"; sha256="1pqb888w0q2zhcgjn0q4na2qwbxy4i8kfk6pp2id20gh8s96sm3f"; depends=[]; }; traudem = derive2 { name="traudem"; version="1.0.1"; sha256="0qxvh5zfj14yaywjzf83v01v6n064iq16ba8g72yh0pbb8i98w9i"; depends=[cli purrr rlang sys withr]; }; traveltimeR = derive2 { name="traveltimeR"; version="1.1.4"; sha256="00mak79ixyzr2d4s8gp4hh84akh97xrdqxih483md0ybnn69j4i9"; depends=[data_table httr jsonlite RProtoBuf]; }; trawl = derive2 { name="trawl"; version="0.2.2"; sha256="1a8cvkmw7bmdljggfv26n2nrad6974spga2yw5386k70ghq56mz3"; depends=[DEoptim ggplot2 ggpubr MASS rootSolve Runuran squash TSA]; }; + treats = derive2 { name="treats"; version="1.0"; sha256="16ahw46wkjhvxhkiy4313ky9vvzjrg2bhxw1pz0j4hasdkd9xq1s"; depends=[ape dispRity MASS rgl]; }; tree = derive2 { name="tree"; version="1.0-43"; sha256="11sjkm89ql1576jy0cqbxzjdpx7qs95wbgdxg92lzkiw05nrj2lv"; depends=[]; }; tree_interpreter = derive2 { name="tree.interpreter"; version="0.1.1"; sha256="18p1x53q1hhhagglgsq2axnr9l5rpa08vxjayqqmb6rsjrkygn78"; depends=[Rcpp RcppArmadillo]; }; tree3d = derive2 { name="tree3d"; version="0.1.2"; sha256="0q72bnzjz5fppgpwbgc5xy7y0kpymwj0j4y90j00p6yjm1kbq1a6"; depends=[rayvertex]; }; @@ -19054,7 +19341,7 @@ in with self; { treeDA = derive2 { name="treeDA"; version="0.0.5"; sha256="0rdqvjj16w7ykpxd6m800h4zv79y9c1phhkl14xy10gbi2cqh10g"; depends=[ape ggplot2 gtable Matrix mvtnorm phyloseq reshape2 sparseLDA]; }; treeDbalance = derive2 { name="treeDbalance"; version="1.0.1"; sha256="0i2sqvqjiw26z3fnbz6h3ki2yjhy0g33rr7wd4bl4vwvr833z7c2"; depends=[rgl]; }; treePlotArea = derive2 { name="treePlotArea"; version="1.4.1"; sha256="1a4r6zbyhicj1ywjxaxd3khx22wqgphp3r7ycd3rlx5rv02fk21i"; depends=[fritools sf]; }; - treebalance = derive2 { name="treebalance"; version="1.1.0"; sha256="0wxsd9mx7bcz95vn4a9w1bzqvd8v1qk5qv00p3x58qks7nzxyzdv"; depends=[ape memoise]; }; + treebalance = derive2 { name="treebalance"; version="1.2.0"; sha256="0mj621kx0gsik8ds0gch3g5b7ndbncw4hin2h2jzlgp7hylkmlhi"; depends=[ape gmp memoise]; }; treebase = derive2 { name="treebase"; version="0.1.4"; sha256="1bx31jahb0wy2g8wl1z71vy659lfi8fq1sbbaxvyixzcwymix1wq"; depends=[ape httr RCurl XML]; }; treeclim = derive2 { name="treeclim"; version="2.0.6.0"; sha256="0zdn766vxgycisjyjw7nh7hs817kqhdihyla3fhpzykw9pxnw0b2"; depends=[abind boot ggplot2 lmodel2 lmtest np plyr Rcpp RcppArmadillo]; }; treedata_table = derive2 { name="treedata.table"; version="0.1.0"; sha256="0dhnb8if5wq6hzhjg40cw80sacigqmlm7nplm1f1ay5cqx1ynfi7"; depends=[ape data_table geiger lazyeval]; }; @@ -19066,7 +19353,8 @@ in with self; { treemapify = derive2 { name="treemapify"; version="2.5.6"; sha256="1w15y842rp2zg5whf3x4fahsi0mvnk92w9rgnsgqivdamzrnd9qg"; depends=[cli ggfittext ggplot2]; }; treemisc = derive2 { name="treemisc"; version="0.0.1"; sha256="0289grmgcvdszsb9lhgygm1dahlcn1m50lh110ny5yjh1b4627kn"; depends=[Matrix Rcpp rpart]; }; treenomial = derive2 { name="treenomial"; version="1.1.4"; sha256="0vx5x7078ccn2bsmcxdls3ymmc7jx71xzq0va0n7gyw36gi7k3nn"; depends=[ape Rcpp RcppArmadillo RcppThread]; }; - treeshap = derive2 { name="treeshap"; version="0.2.5"; sha256="05pxfdjcjdihdf28ca7ybai9xypcsgc6pa1fq86sywiwb0w0vpss"; depends=[data_table ggplot2 Rcpp]; }; + treeshap = derive2 { name="treeshap"; version="0.3.0"; sha256="0d9c48ypsysgra2zn43x8c30g6njina0zva8kv4w8fjlgmidip9a"; depends=[data_table ggplot2 Rcpp]; }; + treesliceR = derive2 { name="treesliceR"; version="1.0.0"; sha256="1ncck3v6yx5gf92i0694znp6mi0v8skkb7pl0pa2iy8ih5nxxhvb"; depends=[ape doParallel foreach ggplot2 sf]; }; treespace = derive2 { name="treespace"; version="1.1.4.3"; sha256="1f5kcydlnbbwf2q2rgb64y3i7x9p7prcw1xc5pjk8wqp2zyr0ijj"; depends=[ade4 adegenet adegraphics ape combinat distory fields htmlwidgets MASS phangorn phytools Rcpp rgl RLumShiny scatterD3 shiny shinyBS]; }; treestartr = derive2 { name="treestartr"; version="0.1.0"; sha256="05rxy9lmb77ng4266871sd881mlp4rd5qalvsd7ps2x2j4plaqf4"; depends=[ape phytools]; }; treestructure = derive2 { name="treestructure"; version="0.1.0"; sha256="0514q53bdwv9fwd58srhr6lzw1j56fcd64hml8w4rv4wzcd6c01m"; depends=[ape Rcpp]; }; @@ -19086,7 +19374,6 @@ in with self; { triangle = derive2 { name="triangle"; version="1.0"; sha256="0vl8rgasmxb64kkk4vph4b7jzmyq9c0lp5jfr9ybmd8czaz6947l"; depends=[assertthat]; }; triangulation = derive2 { name="triangulation"; version="0.5.0"; sha256="1zp09g0s0qpqgz2k6jx32pswh2zqyyd0b62lf1dx1p46m28dafkn"; depends=[]; }; triangulr = derive2 { name="triangulr"; version="1.2.1"; sha256="1fjibp1rhgj363z3gn2iia5iv1hahdabwpxd7q3lxqzxwzs4nfd5"; depends=[cpp11 rlang vctrs]; }; - tribe = derive2 { name="tribe"; version="0.1.8"; sha256="01z1b9k3j4xi5fp9pkpr991yr7x8vk8vysipy7iwdmdr7xg4w4p0"; depends=[dplyr lazyeval magrittr rlang rstudioapi]; }; triebeard = derive2 { name="triebeard"; version="0.4.1"; sha256="1xz0xwq9c986as6g7z2g1ycvw1ryh4g89ygldvakpr21cgpjybqr"; depends=[Rcpp]; }; triggerstrategy = derive2 { name="triggerstrategy"; version="1.2.0"; sha256="1p3x693nc9sx33s8z5v8gmdv3sn1mh1gbm0pdcjriklss3d9d28b"; depends=[GA ldbounds mvtnorm nleqslv]; }; trigpoints = derive2 { name="trigpoints"; version="1.0.0"; sha256="1hckjh2gb0fvd2c8x6mj0idpk3im7b831y7mbli1hqhry6qqdw15"; depends=[sf tibble]; }; @@ -19136,13 +19423,13 @@ in with self; { tsdisagg2 = derive2 { name="tsdisagg2"; version="0.1.0"; sha256="1vjypf9d4rdprpgxfsgpccn412kvar59v341ridq2hcdp7hfb70s"; depends=[]; }; tsensembler = derive2 { name="tsensembler"; version="0.1.0"; sha256="0amb3dn96hdgy5a0j6s43mf82cdjwbz8dhz3yrjlr07nknxzirzi"; depends=[Cubist doParallel earth foreach gbm glmnet kernlab monmlp pls ranger RcppRoll softImpute xgboost xts zoo]; }; tsentiment = derive2 { name="tsentiment"; version="1.0.5"; sha256="1sa1xy1v7p166r3sc3mg66zzw72n8vsy8q636knhyl71zzbvacsw"; depends=[dplyr ggplot2 httr reshape2 stringi syuzhet tibble tidytext wordcloud]; }; - tseries = derive2 { name="tseries"; version="0.10-54"; sha256="0a6hnkx1wpw29q5rqq7hi2fal720dx5f62rvc6gxs8lanmik5jn3"; depends=[jsonlite quadprog quantmod zoo]; }; + tseries = derive2 { name="tseries"; version="0.10-55"; sha256="03jb2ij4jyhrbygi0gha549vq262kx1ffjmy12rf0gak0qmq5iwp"; depends=[jsonlite quadprog quantmod zoo]; }; tseriesChaos = derive2 { name="tseriesChaos"; version="0.1-13.1"; sha256="0qfrrzd0h8n9zp7wj5fl88wkiv22fs5zy8x509g316j0avm5zjr3"; depends=[deSolve]; }; tseriesEntropy = derive2 { name="tseriesEntropy"; version="0.7-2"; sha256="0zlyzda09q7r5iwfsyrv0qr6xpm1rcwjril85hm3mgb2c55c6v9r"; depends=[cubature ks]; }; tseriesTARMA = derive2 { name="tseriesTARMA"; version="0.3-4"; sha256="00ch7dg9fia7yh9q502wndi72nhz5ywqhhla9qgpgg08sfj2414f"; depends=[lbfgsb3c mathjaxr Matrix Rdpack Rsolnp rugarch zoo]; }; tsfeatures = derive2 { name="tsfeatures"; version="1.1.1"; sha256="1z0c1pc2hsw76qwy6nibp1dnmk5vq495g2b81j844ajma6gj7ssy"; depends=[forecast fracdiff furrr future purrr RcppRoll tibble tseries urca]; }; tsfgrnn = derive2 { name="tsfgrnn"; version="1.0.4"; sha256="02sxbf1j2p0j2pqwsdzfpm63dgm2wn0bxlifms3kb18qjsssnjiz"; depends=[ggplot2 Rcpp]; }; - tsfknn = derive2 { name="tsfknn"; version="0.5.2"; sha256="0r68azmcavrp3rx65nafn9nvj530x12y47sgzgkrjjbchfwm2jsw"; depends=[ggplot2 Rcpp]; }; + tsfknn = derive2 { name="tsfknn"; version="0.6.0"; sha256="1yw0k2ivx31b4170wf93vvha4jpkapg4sg5j59igiayf750x1j6h"; depends=[ggplot2 Rcpp]; }; tsfngm = derive2 { name="tsfngm"; version="0.1.0"; sha256="1wx1imbvnc2bjvfal45zhgpz296fiydqffb0rk428xpjgp2dj6p7"; depends=[]; }; tsiR = derive2 { name="tsiR"; version="0.4.3"; sha256="0xzcfdad1z8336wnsrk9sy21psd898wwkdkndq7dshqwp2rj2kxl"; depends=[ggplot2 kernlab reshape2]; }; tsibble = derive2 { name="tsibble"; version="1.1.3"; sha256="0qb5ksj366l253rhkjpq7cpancplx2q81xn95b4ddwpnz3p16hhz"; depends=[anytime dplyr ellipsis generics lifecycle lubridate rlang tibble tidyselect vctrs]; }; @@ -19154,26 +19441,25 @@ in with self; { tsne = derive2 { name="tsne"; version="0.1-3.1"; sha256="126q6ha25wx9mdsfngzkyp8j2fj81ri1knjdq1iyvwx3q1dwdaql"; depends=[]; }; tsoutliers = derive2 { name="tsoutliers"; version="0.6-8"; sha256="02qd7ky416yp2l4cfl2yl7ckr2aidkps9cxkk03r9r7c5247c6zh"; depends=[forecast]; }; tspmeta = derive2 { name="tspmeta"; version="1.2"; sha256="028jbbd0pwpbjq4r6jcc1h0p7c4djcb9d2mvgzw1rmpphaxjvrkd"; depends=[BBmisc checkmate fpc ggplot2 MASS splancs stringr TSP vegan]; }; - tspredit = derive2 { name="tspredit"; version="1.0.707"; sha256="1ycpmi8ywl3p9mkf41y76bxfbwphrmwlh67n71bv6qz6vw8r5klb"; depends=[daltoolbox doBy dplyr FSelector glmnet leaps smotefamily]; }; + tspredit = derive2 { name="tspredit"; version="1.0.747"; sha256="0hsh3r2r4g63fjlsasw9iwddxfr5xbghi17kc3arn85jkwr6k9yz"; depends=[daltoolbox DescTools doBy dplyr forecast FSelector glmnet KFAS leaps mFilter smotefamily]; }; tsqn = derive2 { name="tsqn"; version="1.0.0"; sha256="1iv1wwa6a9824dbgfk5a609szppc3a8j250z74hb8csjvwwx9qq9"; depends=[fracdiff MASS robustbase]; }; tsriadditive = derive2 { name="tsriadditive"; version="1.0.0"; sha256="1zk97vz5ag6j0r8w3b5kgl2cx628jmdy73spmwmsw7x5yc24901d"; depends=[survival]; }; tsrobprep = derive2 { name="tsrobprep"; version="0.3.2"; sha256="0y7h8kh721r859b7y5vxh4q7dmjlx50qcc6pib204x3hhzv1yyrc"; depends=[glmnet MASS Matrix mclust quantreg Rdpack textTinyR zoo]; }; tssim = derive2 { name="tssim"; version="0.1.7"; sha256="154snb0npy8zbkspp475nv9rvv1ls6rbgxz3jr152j79vsiis3ng"; depends=[dsa timeDate tsbox xts zoo]; }; tstools = derive2 { name="tstools"; version="0.4.2"; sha256="0hmx53rgqha3fj9rnv0s2k0ashv8dyl745gng0kq3044jbh1wrln"; depends=[data_table jsonlite xts yaml zoo]; }; - tsutils = derive2 { name="tsutils"; version="0.9.3"; sha256="1r77j13vsd0p6s2c3bva5ayhapiswsr6vfacb3i448h5vh551kgq"; depends=[forecast MAPA plotrix RColorBrewer]; }; - tsvio = derive2 { name="tsvio"; version="1.0.4"; sha256="18acapx4dwdxdq8pdv9vdzcc4g3k8x1c7b78814fmc7w940cya2b"; depends=[]; }; + tsutils = derive2 { name="tsutils"; version="0.9.4"; sha256="1jf37asxg4nfm1jhf6q6fjs8dljlqs1r57kr4q38dnz11hz1jsm4"; depends=[forecast MAPA plotrix RColorBrewer]; }; + tsvio = derive2 { name="tsvio"; version="1.0.6"; sha256="0x1b5wf5n5ljx377s1mgrm1ym6wvcvpq1brrxmfv179rhlm2ifzw"; depends=[]; }; tsviz = derive2 { name="tsviz"; version="0.1.0"; sha256="099ga750kr9hrkd8vaxhz6h4gha6zfr9jzqwrmgms2h2h1a7jxr7"; depends=[dplyr forecast ggplot2 lubridate magrittr miniUI plotly shiny shinyhelper]; }; tsvr = derive2 { name="tsvr"; version="1.0.2"; sha256="1h8yjnw7f8w6m19jh3a518vkzjcmbhl3lk15d1jyhy8p4ajzzjdx"; depends=[]; }; tswge = derive2 { name="tswge"; version="2.1.0"; sha256="1pl10n20w2vz95q28zjiafcjmjij586h33s5b0nqvxfwlask6xbw"; depends=[astsa dplyr forecast ggplot2 magrittr MASS nnfor plotrix PolynomF signal tidyverse waveslim zoo]; }; tsxtreme = derive2 { name="tsxtreme"; version="0.3.3"; sha256="1725rkdq377z3c06hc2g9l0dwgfy5gz3pgygpz1pyy83s5c7j869"; depends=[evd MASS mvtnorm tictoc]; }; ttScreening = derive2 { name="ttScreening"; version="1.6"; sha256="1i8c9l3sdkzl99zxxyfqm84vkh6wjdh3a32l5q8ikf74g9dhxkf4"; depends=[corpcor limma MASS matrixStats simsalapar sva]; }; - ttTensor = derive2 { name="ttTensor"; version="1.0.1"; sha256="0ryfxx4chnc10cl5h5cb4hnvzf2cm64k8m36l4qbjz4f1vkw0a36"; depends=[Matrix PTAk rTensor tensorr]; }; ttbary = derive2 { name="ttbary"; version="0.3-1"; sha256="0dp9jjl33p0r67nk7qxwjkniy7pxp8w7xbymm61hl29hqqbpmszh"; depends=[Rcpp spatstat spatstat_explore spatstat_geom spatstat_linnet spatstat_model spatstat_random]; }; ttbbeer = derive2 { name="ttbbeer"; version="1.1.0"; sha256="1azffcizm3460kxvrxxkilc6qxspyi247x8drrw5ywfichwhmdhc"; depends=[]; }; ttcg = derive2 { name="ttcg"; version="1.0.1"; sha256="1kha6jp89r8qx5rycwlcl1dprw33j71yng03k9l7q3b7d4lz4bg5"; depends=[numDeriv]; }; ttdo = derive2 { name="ttdo"; version="0.0.9"; sha256="0i0qw4zxi1cbqzdfxfdrm2vfppiddgsyf795wny6hz03fl416xkp"; depends=[diffobj tinytest]; }; tth = derive2 { name="tth"; version="4.12-0-1"; sha256="0sdk519sx8h2l0ggddkwlnh9llrx4fzmvwzdjrbi2bg8zv2y30x1"; depends=[]; }; - ttservice = derive2 { name="ttservice"; version="0.3.8"; sha256="1gkkr6vhj0kd16c3wvl35marlykqx80fkny5r7ymrn4vvb2zkm94"; depends=[dplyr Matrix]; }; + ttservice = derive2 { name="ttservice"; version="0.4.0"; sha256="1qqf6vrp9bx72wzy4z6js2svglix3xpn367k5rh4kqi7k860g8fp"; depends=[dplyr Matrix plotly]; }; ttt = derive2 { name="ttt"; version="1.0"; sha256="12bjhp78162v5y64qxfccaqxgwdqhmd3iwjda6pi7j6zqmy9p0gm"; depends=[Formula htmltools knitr]; }; tttplot = derive2 { name="tttplot"; version="1.1.1"; sha256="0rmgp1888y07w0h8kwq1azpr6bysjq4pyjf6ygpra75jj4563wx9"; depends=[]; }; ttutils = derive2 { name="ttutils"; version="1.0-1.1"; sha256="01lmnlyj6pn2r73hhr57r9c83h3pw9x506h4dj09wmlgrzv4w30a"; depends=[]; }; @@ -19185,13 +19471,13 @@ in with self; { tukeytrend = derive2 { name="tukeytrend"; version="0.7"; sha256="15j7g0drb92rpxq7d0jl9h0hxpi9pbgpvfcxaicrcgypxap3721q"; depends=[lme4 Matrix mgcv multcomp nlme pbkrtest]; }; tumgr = derive2 { name="tumgr"; version="0.0.4"; sha256="1ylfmrsg177g75l2scjpgw6v4dpz62r7cy89pql9zd5zqy167xqj"; depends=[minpack_lm]; }; tune = derive2 { name="tune"; version="1.1.2"; sha256="12z1h574ymg9r3q19h5nhbkmzb5p3ckz7xvp6p0yra1mdmzcq0v9"; depends=[cli dials dplyr foreach generics ggplot2 glue GPfit hardhat lifecycle parsnip purrr recipes rlang rsample tibble tidyr tidyselect vctrs withr workflows yardstick]; }; - tuneR = derive2 { name="tuneR"; version="1.4.5"; sha256="1ysjn8mclrjp4qr4m45qanm20gpdbikmgzfrcn2a0phfz8nhvlpm"; depends=[signal]; }; + tuneR = derive2 { name="tuneR"; version="1.4.6"; sha256="1l270rk1m3967fvgpshrbd71l7ns74wdhivbmavayk68dnsiyi65"; depends=[signal]; }; tuneRanger = derive2 { name="tuneRanger"; version="0.5"; sha256="1xf78q8f7sq6w2jjwcw8vz88bmbp8yivydmqygjag58abnhd0356"; depends=[BBmisc DiceKriging lhs lubridate mlr mlrMBO ParamHelpers ranger smoof]; }; tuple = derive2 { name="tuple"; version="0.4-02"; sha256="0fm8fsdfiwknjpc20ivi5m5b19r9scdxhzij70l8qi3ixw1f0rnk"; depends=[]; }; turboEM = derive2 { name="turboEM"; version="2021.1"; sha256="17j308qla2680k0j8cf2c4v1jlsm21z93zglncmw3n0isa7cwjly"; depends=[doParallel foreach iterators numDeriv quantreg]; }; turner = derive2 { name="turner"; version="0.1.7"; sha256="1xckb750hbfmzhvabj0lzrsscib7g187b44ag831z58zvawwh772"; depends=[tester]; }; tutorial_helpers = derive2 { name="tutorial.helpers"; version="0.2.5"; sha256="0nbfd44pzhq41k3r78gm5fqsgb5smm126i27mmpl57kas94wzbs6"; depends=[dplyr gridExtra learnr parsermd purrr readr rmarkdown rstudioapi shiny stringr tibble]; }; - tv = derive2 { name="tv"; version="1.7.3"; sha256="16s87nx7716pn75r27las759vibc3g9xik10rssyhf9ngy5j07ak"; depends=[dplyr lubridate magrittr rlang]; }; + tv = derive2 { name="tv"; version="2.0.0"; sha256="01b8rzjixy0byxrjs408rlvn96akszmgjgnfs967m6n3fix4lvwl"; depends=[dplyr lubridate magrittr rlang]; }; tvR = derive2 { name="tvR"; version="0.3.2"; sha256="1i20z09f714fyn3ipcn9i5g4dx7cyjfkyjqzyqzqapkg0m9ny91m"; depends=[Matrix Rcpp RcppArmadillo Rdpack]; }; tvReg = derive2 { name="tvReg"; version="0.5.9"; sha256="0viv485l2b93j72274h9m3dkrm2ah0kn37pgbxby3ajg2gi86bh9"; depends=[bvarsv MASS Matrix plm systemfit vars]; }; tvem = derive2 { name="tvem"; version="1.4.1"; sha256="09kcz30nh2yaj1cvldvksx6sjhh1ny2ba0n16k34np8ar4ppcb91"; depends=[mgcv]; }; @@ -19201,7 +19487,7 @@ in with self; { tvmComp = derive2 { name="tvmComp"; version="1.0.2"; sha256="1q5c3ahdjjz4h19pwq0dpasv87mzbyqs0hadlfx7mpmncdgyqcqq"; depends=[Rdpack]; }; tvmediation = derive2 { name="tvmediation"; version="1.1.0"; sha256="082lw56yhlb6nj7srdinim1hgvb8szzb3gp2y985115qgdypbv6n"; depends=[dplyr ggplot2 locpol]; }; tvthemes = derive2 { name="tvthemes"; version="1.3.2"; sha256="15m1g191nw1bfz1jgcab316c8jzvam2zc5vnlz8k9b6lcqqnv3nl"; depends=[extrafont ggplot2 magick scales]; }; - twang = derive2 { name="twang"; version="2.5"; sha256="1raczkxbkikwx9gi4p8nzgazqxa41ilpqvfjc07nwkvyqlkmadgw"; depends=[data_table gbm ggplot2 lattice latticeExtra MatrixModels survey xgboost xtable]; }; + twang = derive2 { name="twang"; version="2.6"; sha256="1nvzcrgaspl987ny49rxf3lm3mqiw286kipzrmszdsqwy4m3ha0b"; depends=[data_table gbm ggplot2 lattice latticeExtra MatrixModels survey xgboost xtable]; }; twangContinuous = derive2 { name="twangContinuous"; version="1.0.0"; sha256="0bn1i9nid97irn820591ml3556bbmg6pw2qhm9k9vqgnqmnhcfnq"; depends=[gbm lattice Rcpp survey xtable]; }; twangMediation = derive2 { name="twangMediation"; version="1.2"; sha256="12dj98sqggcqzlkcmn2fmxv81cankp5hmswz07rwb2sn6awlq9jg"; depends=[gbm lattice latticeExtra survey twang]; }; twangRDC = derive2 { name="twangRDC"; version="1.0"; sha256="03z2c18nq6iwwb3si7wjc56npdyray3xsy6k6ifvbalib2ibv2f1"; depends=[data_table ggplot2 MatrixModels xgboost]; }; @@ -19234,20 +19520,18 @@ in with self; { types = derive2 { name="types"; version="1.0.0"; sha256="01shcin8wjbhbmzl979fj3008xqxssw90g3bjg42cnjxkmnaql59"; depends=[]; }; typetracer = derive2 { name="typetracer"; version="0.2.2"; sha256="0w1faggmq0cn62kdwrdyy66kf4iqfhqgvcr2bnjgp6wvshhh2cj7"; depends=[brio checkmate rlang tibble withr]; }; tzdb = derive2 { name="tzdb"; version="0.4.0"; sha256="08rskp7kv2w5pfnrxzswgkdsrg1g0pq3n64q7i3gvpdx85hccls2"; depends=[cpp11]; }; - tzupdater = derive2 { name="tzupdater"; version="0.1.2"; sha256="0s1simvn76m569iq24qb3w6xli0202cjf1jr3a4qy58fs4sda2kv"; depends=[]; }; + tzupdater = derive2 { name="tzupdater"; version="0.1.5"; sha256="0fmg5zm18bq48jwhb1szv4hb8lvbxzlp7mjcirczlzpz7a2rhlv9"; depends=[]; }; u5mr = derive2 { name="u5mr"; version="0.1.1"; sha256="16znlmxanhg1m6fq28z62jv033fxgr4njzz50hgskprvgvx8svkj"; depends=[lifecycle]; }; - uCAREChemSuiteCLI = derive2 { name="uCAREChemSuiteCLI"; version="0.2.0"; sha256="1nccgkxv57inhgvgmhwm4fr8cp28sj8n83za5gam9xx1f42mzsqk"; depends=[ChemmineR usethis]; }; uGMAR = derive2 { name="uGMAR"; version="3.4.5"; sha256="01zs919b24qb102qf9m19x0zzyg7yx8v8w674awzfk4lvm27d2aq"; depends=[Brobdingnag gsl pbapply]; }; uHMM = derive2 { name="uHMM"; version="1.0"; sha256="1516ipadxi7rc1dbinr5rva2fbcr5i2zg3rlli5wy7r6naf8fzzl"; depends=[chron class cluster clValid corrplot FactoMineR HMM tcltk2 tkrplot]; }; uaparserjs = derive2 { name="uaparserjs"; version="0.3.5"; sha256="0v24smgsz1p2wa23mc2llx7dycwmgf7zyxdhwxgwplabpmy3xzhl"; depends=[progress V8]; }; uavRmp = derive2 { name="uavRmp"; version="0.6.2"; sha256="0jv0ls8wbxciv6lhr7qvzarg4s3gckkc1n4w833sfpr0sk4gakaj"; depends=[brew data_table exifr geosphere jsonlite link2GI log4r rlist sf sp zoo]; }; - ubiquity = derive2 { name="ubiquity"; version="2.0.0"; sha256="1zjjwpl8zkpr4zvrhsbsj6vpiwy08vs2sw1rpx7aq940v37dvmbz"; depends=[deSolve digest doParallel dplyr flextable foreach ggplot2 knitr magrittr MASS onbrand optimx PKNCA pso readxl rhandsontable rmarkdown scales shiny stringr]; }; + ubiquity = derive2 { name="ubiquity"; version="2.0.1"; sha256="1jy1jgzwnzynakzhb50gm6q1f97h0fhzg7qxvar7hl7068cbrc40"; depends=[cli deSolve digest doParallel dplyr flextable foreach ggplot2 knitr magrittr MASS onbrand optimx PKNCA pso readxl rhandsontable rmarkdown scales shiny stringr]; }; ubms = derive2 { name="ubms"; version="1.2.6"; sha256="10jr2nb8pq0rxx1h0zci4zybbj108maa5kdzgf9bj87pzsrxhda7"; depends=[BH ggplot2 gridExtra lme4 loo Matrix pbapply Rcpp RcppArmadillo RcppEigen RcppParallel rlang RSpectra rstan rstantools StanHeaders unmarked]; }; - uchardet = derive2 { name="uchardet"; version="1.1.1"; sha256="0m3xy807smqdxhkhd9cwrcf3ljlyvfmnkd7831qzpgcadam2jcdj"; depends=[]; }; uci = derive2 { name="uci"; version="0.3.0"; sha256="0bqyj69xplr8hbc1b9rpjxvzmnhwkqy2xdyd4my53niq2gm55750"; depends=[checkmate cppRouting data_table fields furrr future pbapply sf spdep]; }; ucie = derive2 { name="ucie"; version="1.0.2"; sha256="032anlli29a0iwzmn35afrcs4if5kipplpn8n4qpy1g14hc5zgvd"; depends=[colorspace dplyr geometry pracma ptinpoly remotes rgl]; }; uclust = derive2 { name="uclust"; version="1.0.0"; sha256="10i78fc81sy635mi8nn1gmryvcbqq7f99ws6byqlnhwyw79qmvb1"; depends=[dendextend robcor]; }; - ucminf = derive2 { name="ucminf"; version="1.2.0"; sha256="1x3d3l500kyqamzfjpz4qc38d6d3sha9av3rpxz0m4dhms28zpas"; depends=[]; }; + ucminf = derive2 { name="ucminf"; version="1.2.1"; sha256="10ycpzxx73div9vpzmkhy524yd47kzmpl7ajpm248clsv6ivngpd"; depends=[]; }; udpipe = derive2 { name="udpipe"; version="0.8.11"; sha256="0crjcfrpb0m7f58w7ksz7kvglvmc45axy9kbbvqz9w6i4kg00aaj"; depends=[data_table Matrix Rcpp]; }; udunits2 = derive2 { name="udunits2"; version="0.13.2.1"; sha256="00prsy8m41v1camcsz94d7gm8qab2mdnwl3x0dyhz4r49b02jm4z"; depends=[]; }; ufRisk = derive2 { name="ufRisk"; version="1.0.7"; sha256="1cqx416kb8pfaxx2hidv6vyackbps7azrkgkqzwyycrbi177riwb"; depends=[esemifar fracdiff rugarch smoots]; }; @@ -19264,11 +19548,12 @@ in with self; { uklr = derive2 { name="uklr"; version="1.0.2"; sha256="1x5lfzb0a64k84dscdj61kcibww8mizf9w62anmb207f8dggj7lg"; depends=[curl httr jsonlite tibble]; }; ukpolice = derive2 { name="ukpolice"; version="0.2.2"; sha256="1dwwixhiarlpdss7rhiamzcsl1k2yphgmjzh7wn2my4vxj06817l"; depends=[httr jsonlite purrr snakecase tibble]; }; ulid = derive2 { name="ulid"; version="0.3.0"; sha256="0xxkqrnlz3pkb3s1gacfzqav54w97gc0w8rh0fn1qy5rkmg2bplv"; depends=[Rcpp]; }; + ulrb = derive2 { name="ulrb"; version="0.1.3"; sha256="0xwlj8cc7y4p51r0p46bz1ac7klrl2b9h7cr704d0cpvcwy11y7f"; depends=[cluster clusterSim dplyr ggplot2 gridExtra purrr rlang tidyr]; }; umap = derive2 { name="umap"; version="0.2.10.0"; sha256="1abfddi0rq75b7nlx6550fx9nrqa62vb92xyp05ris25jf98ciwd"; depends=[Matrix openssl Rcpp reticulate RSpectra]; }; umbridge = derive2 { name="umbridge"; version="1.0"; sha256="0p49mwi8qy90vb5xbv6w97sjv373cmp26vkk5y1nacqx6g6yvc5f"; depends=[httr2 jsonlite magrittr]; }; umiAnalyzer = derive2 { name="umiAnalyzer"; version="1.0.0"; sha256="147x48mr9mj0njwbz39876795rninvk89zm9immkppdm4s5g1ghf"; depends=[BiocManager dplyr DT forcats ggplot2 gridExtra magrittr pheatmap plotly readr Rsamtools scales shiny shinydashboard shinyFiles shinyWidgets stringr tibble tidyr viridis]; }; ump = derive2 { name="ump"; version="0.5-8"; sha256="1sg226caq9y41cwl7wr5s9z3bpq2j5p6rj6fy2pasbzimgzw0byx"; depends=[]; }; - umx = derive2 { name="umx"; version="4.16.0"; sha256="04kjmcc9nf3x2ma2a5diajxr0qmssfd6axhdjq38qp7sgpwappxk"; depends=[cowplot DiagrammeR DiagrammeRsvg ggplot2 kableExtra knitr lavaan MASS Matrix MuMIn mvtnorm nlme OpenMx polycor R2HTML RCurl rsvg scales xtable]; }; + umx = derive2 { name="umx"; version="4.19.0"; sha256="0cp482g025ivhkxsj9zdyp3abcn4nyiy5psh0w4vvspgb5lvghs5"; depends=[cowplot DiagrammeR foreign gert ggplot2 hrbrthemes kableExtra knitr lavaan MASS Matrix MuMIn mvtnorm nlme OpenMx openxlsx paran polycor psych psychTools pwr R2HTML RCurl rmarkdown scales xtable]; }; unbalhaar = derive2 { name="unbalhaar"; version="2.1"; sha256="0fgnvl9ammawgm5nf2icw64yzivqw7sl07dpvrsb5rypvrm8d040"; depends=[]; }; uncertainty = derive2 { name="uncertainty"; version="0.2.0"; sha256="1mq14ny7l3gy3wjsqijnm37azavyapxszjnckd861h4hgcpdcdjz"; depends=[mvtnorm triangle]; }; uncmbb = derive2 { name="uncmbb"; version="0.2.2"; sha256="0szlz52p0ywl8526mhm0i0pk1vx72kc3474cx0w47xxig83a1j9b"; depends=[dplyr rlang]; }; @@ -19276,6 +19561,7 @@ in with self; { understandBPMN = derive2 { name="understandBPMN"; version="1.1.1"; sha256="04wnyxplrn5c6jb76dw25pawwcvvn5xq80lqn5imsf31nbwybpm5"; depends=[devtools dplyr purrr R_utils Rcpp tibble tidyr usethis XML]; }; unglue = derive2 { name="unglue"; version="0.1.0"; sha256="0w8ld4xllx0lj1jz8i2sj92f8136hlwri1d8ldpg1ymxj7aw93vg"; depends=[]; }; ungroup = derive2 { name="ungroup"; version="1.4.2"; sha256="0rdh5h1jfc0nv6alf648vd93gfiqc10l0jgfd4i2v2b7jnypwf4q"; depends=[Matrix pbapply Rcpp RcppEigen Rdpack]; }; + unhcrthemes = derive2 { name="unhcrthemes"; version="0.6.2"; sha256="1qi3clng771mzbaa4j6a80wn6am0fl2gix2xdmy3d6ygrrgkgd7r"; depends=[extrafont ggplot2 ggrepel ggtext scales systemfonts]; }; unheadr = derive2 { name="unheadr"; version="0.3.3"; sha256="1870nn28d7yf9ag31hvhvq00jms4fywjddsk3yd645dhvkr4afcs"; depends=[dplyr forcats magrittr readxl rlang stringr tibble tidyr tidyxl]; }; uni_survival_tree = derive2 { name="uni.survival.tree"; version="1.5"; sha256="1brkppsk7likpffzz0ykhqxw99qin57zzcjcib2fcdn3n8gpwq7w"; depends=[compound_Cox survival]; }; uniReg = derive2 { name="uniReg"; version="1.1"; sha256="0wjc7pgaisvk26j7grxp2ypsabb5my9wg6c9i5w9zhh5jdx1fdab"; depends=[DoseFinding MASS mvtnorm quadprog SEL]; }; @@ -19294,16 +19580,17 @@ in with self; { unitedR = derive2 { name="unitedR"; version="0.4"; sha256="0h4i814awb8419693jz3x5cyhs2x6y5flmz339bg6ivmg13d9h3s"; depends=[plyr]; }; unitizer = derive2 { name="unitizer"; version="1.4.20"; sha256="0s2jgvxdlz95ykdz3mwy6l5iry74qyv716d6fz18jxnixcx6vyss"; depends=[crayon diffobj]; }; unitquantreg = derive2 { name="unitquantreg"; version="0.0.6"; sha256="087d4v5fpiznl37frjg6c01bfgvx3vx0yw8cnbm3wsdj9dak94ym"; depends=[Formula MASS numDeriv optimx quantreg Rcpp]; }; - units = derive2 { name="units"; version="0.8-4"; sha256="1z672lsyrbm8mjv6ni8pa0cxixf9vi249281ym1ayrv13s4s37a9"; depends=[Rcpp]; }; + units = derive2 { name="units"; version="0.8-5"; sha256="1c836qazrs8z9p1xkcfl9gl882i8q7qf2g73l483w18bfspq0pnr"; depends=[Rcpp]; }; unittest = derive2 { name="unittest"; version="1.6-0"; sha256="10k1lx4pzl884m00mx191h5hxcgcsiz9486dbyjvsyhh0hv2xi0v"; depends=[]; }; univOutl = derive2 { name="univOutl"; version="0.4"; sha256="1kp014bhs8v02fp7misrj4fpfp2na9lg45p5zqvlfaypnm5imsr9"; depends=[Hmisc robustbase]; }; unival = derive2 { name="unival"; version="1.1.0"; sha256="0j7fl77my2273k72s8k9v5pcb85swxfipjxmk4vw487i7aq8b1nq"; depends=[psych]; }; univariateML = derive2 { name="univariateML"; version="1.1.1"; sha256="0a4h19hmw0k2x5yqs92xp48r2srycv4sax97p7gci8hahjw8qzdf"; depends=[actuar assertthat extraDistr fGarch logitnorm nakagami tibble]; }; universals = derive2 { name="universals"; version="0.0.5"; sha256="1038x1ymzyiim7gdz09hrs8i0qdzya0p0c5l7y3kgw1a4if2zhmj"; depends=[]; }; - unix = derive2 { name="unix"; version="1.5.5"; sha256="1js3i1h2arral5x5cm6zl0qnidwjqlp8aqwd0vcj0bp0z5zvks1k"; depends=[]; }; + unix = derive2 { name="unix"; version="1.5.6"; sha256="1f8rk9davqhbmwxwxdnvmrrmfi76xzf1n4kl6d0lb0jrczb74qap"; depends=[]; }; unjoin = derive2 { name="unjoin"; version="0.1.0"; sha256="1hp9fxkb59z0cpnwxpaf5whglrljg2nrmsygdb98klxsama9gr5z"; depends=[dplyr rlang tibble]; }; - unmarked = derive2 { name="unmarked"; version="1.3.2"; sha256="10zq1hqrpr9js1sfdwnai64ymh2pjkh15k26jvh1jx32r0cidlm1"; depends=[lattice lme4 MASS Matrix pbapply Rcpp RcppArmadillo RcppEigen TMB]; }; - unnest = derive2 { name="unnest"; version="0.0.4"; sha256="1ajap4r3f4sbp9lnpk1c2if0g30lg4ds9l2l222mxrl45ysrknxa"; depends=[]; }; + unmarked = derive2 { name="unmarked"; version="1.4.1"; sha256="1ishwzqkkvin7vralpxnb2fdc75gvsxz1l5b9902y4h0mm4749qw"; depends=[lattice lme4 MASS Matrix Rcpp RcppArmadillo RcppEigen TMB]; }; + unmconf = derive2 { name="unmconf"; version="0.1.0"; sha256="1cs9kjyq4s6s48ck1wg7piy9r9f6s27kiawzpv6mb514z09gvgr7"; depends=[glue janitor rjags]; }; + unnest = derive2 { name="unnest"; version="0.0.5"; sha256="188la0g80ihcisb0gwnxbgxy882i74ngjgaa304kx8bq8sn6x4cz"; depends=[]; }; unpivotr = derive2 { name="unpivotr"; version="0.6.3"; sha256="0j3vlh9g0zkm4gql4myisbmkhpvyqa0sb1dkc0xvvqczs93pzzax"; depends=[cellranger dplyr forcats magrittr pillar purrr rlang tibble tidyr tidyselect xml2]; }; unrepx = derive2 { name="unrepx"; version="1.0-2"; sha256="1v27r1lap282zjykki377ni2mmimng81fwmpgs1q6kszvpq8fby6"; depends=[]; }; unrtf = derive2 { name="unrtf"; version="1.4.3"; sha256="1jm2rwik6vxbvzal98h8631csln7plwk5jcaaw4yvgwssmp141mk"; depends=[sys]; }; @@ -19314,7 +19601,7 @@ in with self; { unvotes = derive2 { name="unvotes"; version="0.3.0"; sha256="1vfyvwqfbxp29x2a0sqng6l5pkp2hc3hadp95ysnpannnsd6x0jw"; depends=[]; }; uotm = derive2 { name="uotm"; version="0.1.6"; sha256="0f8mkamgkyn97n6795hi385lakws6nm8aqwrccpdxhpj1ymmrjv7"; depends=[boot forecast ggplot2 hash]; }; updater = derive2 { name="updater"; version="0.1.2"; sha256="1grf0wv1z8n8fabrj4f5mj9vn9fngkqhniqngspbfkxkgws0rilf"; depends=[cli renv]; }; - updog = derive2 { name="updog"; version="2.1.3"; sha256="1i7dc8msky5g658iwcvdvda2m0ya9cnbzm9d565l01lf184dfhhk"; depends=[assertthat doFuture doRNG foreach future ggplot2 ggthemes iterators Rcpp RcppArmadillo reshape2]; }; + updog = derive2 { name="updog"; version="2.1.5"; sha256="118i7z797cc7hhsk0i4w7n0p7znw9szvn7mbymc7d9yqnck4x6d9"; depends=[assertthat doFuture doRNG foreach future ggplot2 iterators Rcpp RcppArmadillo reshape2]; }; upndown = derive2 { name="upndown"; version="0.1.0"; sha256="0yri819zib1m7cj669x007183x9062xgz0pmhghbh6mfaz6rbclj"; depends=[cir expm numbers]; }; upsetjs = derive2 { name="upsetjs"; version="1.11.1"; sha256="0flpamy4wfjz1b0wi338rcim2zsh33jpskrq6g8jvljlc4asr485"; depends=[htmlwidgets magrittr]; }; upstartr = derive2 { name="upstartr"; version="0.1.1"; sha256="09xzj423v0x4qvqfgyqpxyg63p8f1n5ppjc8swpyv1747ll5zmg8"; depends=[beepr crayon dplyr ggplot2 glue here knitr librarian magrittr openxlsx purrr readr readxl rmarkdown scales sf stringr textclean tgamtheme tidytext]; }; @@ -19326,8 +19613,8 @@ in with self; { urlchecker = derive2 { name="urlchecker"; version="1.0.1"; sha256="06034lb94krbzawqg5xklwcksvyyzl3qy355f66baj5pw7dms5k2"; depends=[cli curl xml2]; }; urlshorteneR = derive2 { name="urlshorteneR"; version="1.5.7"; sha256="0zfvcwcy2ykvkbnqgxhzxf99shcby81cx8fjbmy6b07rj9407arj"; depends=[assertthat cli clipr httr jsonlite lubridate miniUI shiny stringr]; }; urltools = derive2 { name="urltools"; version="1.7.3"; sha256="04x3my655dd287cbsszbnf75q0swmjlxxrblcsay7a8n3df3a830"; depends=[Rcpp triebeard]; }; - uroot = derive2 { name="uroot"; version="2.1-2"; sha256="0dsb1vdr2bwy64v889svhvkadg5jl9cl77mfiw79vl18b7ixjzxx"; depends=[]; }; - ursa = derive2 { name="ursa"; version="3.10.2"; sha256="01linzsfarvpnzgjsc2zq07z3dvw3wwddd1da5jkfmd086774580"; depends=[png sf]; }; + uroot = derive2 { name="uroot"; version="2.1-3"; sha256="0bscxlpy1jrgabif2kk9xjb1x095x21psmqwr0h81719378j7xih"; depends=[]; }; + ursa = derive2 { name="ursa"; version="3.10.3"; sha256="0j4r9kygzrng5syxsyyqmqxvh5f1xwwzqqb07mnb7skh2ry1qhmx"; depends=[png sf]; }; us_census_geoheader = derive2 { name="us.census.geoheader"; version="1.0.2"; sha256="17mss1ggaqkd0ac7g9chgqdrpi5xlbfkxsm1jvj48rp2jfwpp4jw"; depends=[tibble]; }; usa = derive2 { name="usa"; version="0.1.0"; sha256="0scdrd6b48n019f7qp77rrkqgmapnrknalq0hml1cy7m43llqf6d"; depends=[tibble]; }; uscoauditlog = derive2 { name="uscoauditlog"; version="1.0.3"; sha256="156by8lans2jk8kjll88ljc6z5idgvqwkvrgdwjkr4l4xnsz0sif"; depends=[openxlsx readxl stringr]; }; @@ -19335,10 +19622,9 @@ in with self; { usdarnass = derive2 { name="usdarnass"; version="0.1.0"; sha256="10fh9anpmbb7i70q3hjxbplrkqa1q86zgh8nldsf2i526p62hpm1"; depends=[httr jsonlite readr]; }; usdata = derive2 { name="usdata"; version="0.2.0"; sha256="1gnd662v6vcmjvj18c1p61q8lxahkyxnk5dbvf26j6z4jvbhk975"; depends=[tibble]; }; usdm = derive2 { name="usdm"; version="2.1-7"; sha256="1mr728wmi37kj8m47wjlkc23ifv4rk2fyypyj8rqkpwml5nwjprh"; depends=[raster terra]; }; - usdoj = derive2 { name="usdoj"; version="1.1.0"; sha256="0ddvp3qh1ynzzpzq8rgblkb1z5j5jwyzkfgd9xyzdkcby90k7zya"; depends=[anytime dplyr httr jsonlite stringr tibble]; }; usedist = derive2 { name="usedist"; version="0.4.0"; sha256="0ddf1zcalbrn293qmr9kdzz3x16fzc4k1bwb1pjmwnspisqfi8kj"; depends=[]; }; usedthese = derive2 { name="usedthese"; version="0.3.3"; sha256="0frdjwqhxkvhahm22vvcyfr464i3mi10y1ynm3k98zypcgp0lkdx"; depends=[conflicted dplyr highr kableExtra knitr purrr readr rlang stringr tibble tidyr tidyselect withr]; }; - useful = derive2 { name="useful"; version="1.2.6"; sha256="0n50v1q75k518sq23id14jphwla35q4sasahrnrnllwrachl67v1"; depends=[assertthat dplyr ggplot2 magrittr Matrix plyr purrr scales]; }; + useful = derive2 { name="useful"; version="1.2.6.1"; sha256="1gb9hqvbm6pr56dfqlsgz26lan7xargfsm8jpdja18mpgli2gyvc"; depends=[assertthat dplyr ggplot2 magrittr Matrix plyr purrr scales]; }; usefun = derive2 { name="usefun"; version="0.5.0"; sha256="1gpyix8xpn4jmfjrycan6r1qvp7z7mhcngp02fcws6k2hvd7jajr"; depends=[dplyr PRROC]; }; usemodels = derive2 { name="usemodels"; version="0.2.0"; sha256="1dc74v4dnbj532cdphskm0y7sqgq1q4yzq634dbvq2bjpqdzf3si"; depends=[cli clipr dplyr purrr recipes rlang tidyr tune]; }; usethis = derive2 { name="usethis"; version="2.2.2"; sha256="0imy9izchr9xzc5wrr91ydfr4jifv8lsqx712zkx0vxfi6kw3n6r"; depends=[cli clipr crayon curl desc fs gert gh glue jsonlite lifecycle purrr rappdirs rlang rprojroot rstudioapi whisker withr yaml]; }; @@ -19347,17 +19633,16 @@ in with self; { usincometaxes = derive2 { name="usincometaxes"; version="0.7.0"; sha256="018hc48l58p8ybdvdshh2kkl0pm6b8wsqgc0qjcq60z6v8s4sqx4"; depends=[tibble V8 vroom]; }; uskewFactors = derive2 { name="uskewFactors"; version="2.0"; sha256="0ndi5987ak8sa7krgiglsibfg0k7z9j8fg47hg1m8ar0sq4r1yj6"; depends=[MASS MCMCpack mvtnorm tmvtnorm]; }; usl = derive2 { name="usl"; version="3.0.3"; sha256="0hql4bc40xa62r465lm4x14yf8dbhsl046i5k8xlq1qr93cw6pnx"; depends=[nlsr]; }; - usmap = derive2 { name="usmap"; version="0.6.3"; sha256="0rhg1llarlbsin1dixbwrnb28xjzsbf5b30i5ijkfr2qjv5nrn2p"; depends=[rlang usmapdata]; }; - usmapdata = derive2 { name="usmapdata"; version="0.1.1"; sha256="1nxxf3s0ldnlg2b662lqg0q5961y20iwb77w5gm4mzb3600das34"; depends=[]; }; + usmap = derive2 { name="usmap"; version="0.6.4"; sha256="0vc8v37j4srjayay3yg2zm1142jcw8b15j7pk04880l66v7nfz2r"; depends=[rlang usmapdata]; }; + usmapdata = derive2 { name="usmapdata"; version="0.1.2"; sha256="1blhlgsj72zy4a6f30gnqnw6za93jdr0ylpl0i8d3j0xrn3rszb4"; depends=[]; }; ussherR = derive2 { name="ussherR"; version="1.10"; sha256="0awhric6xrhgv4wb9saq7jyikd3h74i6vlq3aqip4i1m9j3ym3k1"; depends=[]; }; - ustfd = derive2 { name="ustfd"; version="0.4.1"; sha256="1pc5yggffy3y4hg3qpiih9fyw4rzc65s5n650ng05k5xdfjmm7n2"; depends=[dplyr glue httr lubridate purrr readr rlang snakecase stringr tibble]; }; + ustfd = derive2 { name="ustfd"; version="0.4.3"; sha256="1ipzy6vc8p71hw3gwwzwy38bigpyca4iskirkr9qmpydar0fnphg"; depends=[dplyr glue httr lubridate purrr readr rlang snakecase stringr tibble]; }; ustyc = derive2 { name="ustyc"; version="1.0.0"; sha256="1267bng2dz3229cbbq47w22i2yq2ydpw26ngqa1nbi3ma6hwqsv4"; depends=[plyr XML]; }; utc = derive2 { name="utc"; version="0.1.5"; sha256="1lhm5rhr78cxp3cz5n6j2zkhjphj7csk026xvvhkjqdi39rrq6i4"; depends=[]; }; utf8 = derive2 { name="utf8"; version="1.2.4"; sha256="0zbv2s5dkzxim3ydyk12479m28f68mak9m50v396in4wpm5q53s1"; depends=[]; }; utile_tables = derive2 { name="utile.tables"; version="0.3.0"; sha256="0lsfv5mhyzf1mw2mlyp7xqdin7nhbw473gbibsk1anwmhlvwkipy"; depends=[dplyr purrr rlang tidyselect utile_tools]; }; utile_tools = derive2 { name="utile.tools"; version="0.3.0"; sha256="0qxslz6wi4gss9g16p7q6w99pds81pcp9nkffi8b5wrjxj0z2igq"; depends=[lubridate purrr vctrs]; }; utile_visuals = derive2 { name="utile.visuals"; version="0.3.3"; sha256="1f5zhbsx3iaayh9a92w3hlz8nxbfahdk1j8x62r84yp3aw1skbvz"; depends=[dplyr ggplot2 gridExtra purrr]; }; - utilities = derive2 { name="utilities"; version="0.6.1"; sha256="0wcw9gcxd66vhr7vb24y94bgqckfkwvg1rcsxdqaz5r06qn2p9nf"; depends=[]; }; utility = derive2 { name="utility"; version="1.4.6"; sha256="0785pyapq03kyk9lwxyqvs2fdagay1dg71fjqikr6hidbid5fqr3"; depends=[]; }; utilityFunctionTools = derive2 { name="utilityFunctionTools"; version="0.1.1"; sha256="1225nl83yka31j0adm1210kc89vs3hi9i2pqrykax109sgk0nw97"; depends=[spatstat_geom]; }; utilsIPEA = derive2 { name="utilsIPEA"; version="0.0.6"; sha256="07avc0j6qkzqmznbydn0zdg743g7g7kn2bcx5n03m3wg0fqyggr7"; depends=[data_table dplyr RCurl stringdist stringr]; }; @@ -19371,14 +19656,14 @@ in with self; { vICC = derive2 { name="vICC"; version="1.0.0"; sha256="13lcs7wwj1xfbjf3q7r8ssf00jg5hr1vjp2pyw0r42iz7mx47xjv"; depends=[coda ggplot2 nlme Rdpack rjags]; }; vMF = derive2 { name="vMF"; version="0.0.2"; sha256="048hlayd4mqj60np3s9fbryd1fxb6zxzvckz18jp0dbmjbmzwbrl"; depends=[Rcpp RcppArmadillo]; }; vaRiskScore = derive2 { name="vaRiskScore"; version="1.1.0"; sha256="031k19ric26xvrva3rs9894n7ak87h96d2c4ip1lrr0lhhbk3awv"; depends=[]; }; - vaccine = derive2 { name="vaccine"; version="1.0.0"; sha256="19mg2kiv8m3w8x2b2ran4x8bfq73bg9rijvqs66jqv2zhi6siwkl"; depends=[dplyr e1071 earth fdrtool ggplot2 ggpubr glmnet rlang Rsolnp simest SuperLearner survival survML truncnorm]; }; + vaccine = derive2 { name="vaccine"; version="1.1.0"; sha256="17lr8hrxihrg6046zq8zzyp60w0i2kdajyp16y9vc8qkp0n3wp62"; depends=[dplyr e1071 earth fdrtool ggplot2 ggpubr glmnet rlang Rsolnp simest SuperLearner survival survML truncnorm]; }; vacuum = derive2 { name="vacuum"; version="0.1.0"; sha256="0cmlvlz83gyga05g71hrnq4kpck9flq0qlhjviqqz9zrmljzin0x"; depends=[dplyr magrittr]; }; vader = derive2 { name="vader"; version="0.2.1"; sha256="1xjak5xlgpk0ds4l825kq90dg6kk5i5al5zmjqjqn8b7xdgix8mf"; depends=[tm]; }; vaersNDvax = derive2 { name="vaersNDvax"; version="1.0.4"; sha256="0hvw7vbxs87c9xkdv3617fkjwz2dbawscbd7dgaixhdhcr3k823a"; depends=[]; }; vaersvax = derive2 { name="vaersvax"; version="1.0.5"; sha256="0bfbpdjnykvb9r0p28bz8lrqxksy4jvwnd28y6gdlprpisiipiic"; depends=[]; }; vagalumeR = derive2 { name="vagalumeR"; version="0.1.6"; sha256="0zakpg5p9kif61d35as08f2dac3wncyvhpc83rqjp96g99wjf701"; depends=[dplyr httr jsonlite magrittr purrr stringr]; }; vagam = derive2 { name="vagam"; version="1.1"; sha256="1bgpf0z23yqyaz7dfmqilyqvr5v4w891027xrlr0mk9grj4srmiq"; depends=[gamm4 Matrix mgcv mvtnorm truncnorm]; }; - valaddin = derive2 { name="valaddin"; version="1.0.1"; sha256="15j1zkmxf11706hrjhn6vh2h9zmlcdihrxqyxflp3kah9an0hldm"; depends=[lazyeval]; }; + valaddin = derive2 { name="valaddin"; version="1.0.2"; sha256="03l4c6vbzaxcrzc0ykx52h420r8cp3vrqxzl8jzxq8c8a9ms1xsi"; depends=[lazyeval]; }; valection = derive2 { name="valection"; version="1.0.0"; sha256="0104zcg3cw57ksgmb321hnyv095mn3frxci9vikj1smwarpnrpzc"; depends=[testthat]; }; valet = derive2 { name="valet"; version="0.9.0"; sha256="0xgp3rzwyshjw8s9ncpals8naja7fc2yk81abl08gh43zp294scm"; depends=[dplyr httr jsonlite magrittr purrr readr]; }; valhallr = derive2 { name="valhallr"; version="0.1.0"; sha256="1lgdcvbk5g8xq9b18aqfq434cvdcshl3b6s28sx4r3jb8fxkia26"; depends=[Cairo dplyr geojsonio ggplot2 ggspatial htmltools httr jsonlite leaflet magrittr purrr rlang sf stringr tibble tidyr]; }; @@ -19419,35 +19704,38 @@ in with self; { variables = derive2 { name="variables"; version="1.1-1"; sha256="13hji43m9nb7rpc8p4bz1qva5jhxwdk16mcprvhb5pxp78w7clyf"; depends=[]; }; varian = derive2 { name="varian"; version="0.2.2"; sha256="0jyw46qx2w19h02mrwv3w3n8qc1n4b3ckm38qly1y4a4w9ib6c2i"; depends=[Formula ggplot2 gridExtra MASS rstan]; }; variantspark = derive2 { name="variantspark"; version="0.1.1"; sha256="13hkp6l64hi7xlll09gin7kdlkqrkn0lggrw8147zy9ivhknhk59"; depends=[sparklyr]; }; + variationalDCM = derive2 { name="variationalDCM"; version="1.0.0"; sha256="1afl53g7k8adf9cjwqx7x6nh26c6ym3h87wgg1q767k93n5jvvfj"; depends=[mvtnorm]; }; variosig = derive2 { name="variosig"; version="0.3-1"; sha256="09cxigii0sj78yqd18p4mm9jjqvd1k2cgjy43pxpmqdhia0q2pmv"; depends=[gstat sp testthat]; }; varitas = derive2 { name="varitas"; version="0.0.2"; sha256="16y0fcisdf4pypwqshy9c45v57axa25k8cpp1pr2ij95zycs3g1k"; depends=[assertthat doParallel dplyr foreach magrittr openxlsx stringr tidyr VennDiagram yaml]; }; varjmcm = derive2 { name="varjmcm"; version="0.1.1"; sha256="1xgy3n57pxhv6wrsw9h4dranxbw6hdpm1f9ra3kwlzrpz5c3289x"; depends=[expm jmcm MASS Matrix]; }; varoc = derive2 { name="varoc"; version="0.1.0"; sha256="1b8dfz56ly8hd36h9jf29irnckbc2v6s5whfmha3ah1bal7k2ajp"; depends=[corrplot pROC]; }; varrank = derive2 { name="varrank"; version="0.5"; sha256="0f2k18v6ygb5cwd6jri9ws97zq47znrqacv2adkd2yqp3jhwd24f"; depends=[FNN]; }; - vars = derive2 { name="vars"; version="1.5-9"; sha256="1b3w2vi0szpps7kzy30s1n8h2iaj4jxg82ym6zrza0z7msgmypi8"; depends=[lmtest MASS sandwich strucchange urca]; }; + vars = derive2 { name="vars"; version="1.6-0"; sha256="0bc2xh5nka18bvsy9pq3cd93447zsvdxvs1yi2vcpjw7szcywzzd"; depends=[lmtest MASS sandwich strucchange urca]; }; varsExplore = derive2 { name="varsExplore"; version="0.3.0"; sha256="0d18wqq7fbs5ljdphsdgqmv8ab0wrzzykjhf4lqksi7n78s1fa2r"; depends=[dplyr DT glue magrittr purrr rio rstudioapi stringr tidyr]; }; varycoef = derive2 { name="varycoef"; version="0.3.4"; sha256="1dfych3qhqq4qadizxjgh4lswnm47m2g59gv14c8j349ji94i8qh"; depends=[glmnet lhs mlr mlrMBO optimParallel ParamHelpers pbapply smoof spam]; }; vasicek = derive2 { name="vasicek"; version="0.0.3"; sha256="04g5dfn8zlm8n8sxmdq9xgkf0qbvvznqx27nyan268s5wlnnabd6"; depends=[mvtnorm]; }; vasicekreg = derive2 { name="vasicekreg"; version="1.0.1"; sha256="0hlac3p6mm7x88wdlqc93byx1s2a287kvhwzhz01pz4anap30683"; depends=[gamlss gamlss_dist mvtnorm Rcpp]; }; vatcheckapi = derive2 { name="vatcheckapi"; version="0.1.0"; sha256="1jmfd6qksvw1dnlp4dyb33mr7y9phq9yw0k9qjla0z1jqc0gsnps"; depends=[httr jsonlite]; }; - vaultr = derive2 { name="vaultr"; version="1.1.1"; sha256="1ahn79ixwmnglib3cllha941pvhg1jgk89qcxq4gi7ip8zj0v7sj"; depends=[getPass httr jsonlite R6]; }; + vaultr = derive2 { name="vaultr"; version="1.2.0"; sha256="1dbwr50jsx8m615wdlk437ac23y4dk9iqcihlbnail470hfdq5gw"; depends=[getPass httr jsonlite R6]; }; vccp = derive2 { name="vccp"; version="0.1.1"; sha256="1c0mk46c74kj5y9rfniywbxxmwb2z16szzpq6b2sw8q0qi1cf5ji"; depends=[mosum mvtnorm VineCopula]; }; - vcd = derive2 { name="vcd"; version="1.4-11"; sha256="0ch9ks25ab4h4fh4y267s0psvc4ndyaplk8ddva2j54yd1ayhm3s"; depends=[colorspace lmtest MASS]; }; + vcd = derive2 { name="vcd"; version="1.4-12"; sha256="127dkln826ah5ydp3pmd5bqyns9m9m6yrjnmn7fir4r9al8yycf9"; depends=[colorspace lmtest MASS]; }; vcdExtra = derive2 { name="vcdExtra"; version="0.8-5"; sha256="09kpfnyi6q7xn4x6f7i3k8g6f2fdnm7kk81lxjmlhhn36jxc2p2i"; depends=[ca dplyr glue gnm here MASS purrr readxl stringr tidyr vcd]; }; - vcfR = derive2 { name="vcfR"; version="1.14.0"; sha256="1jq4c8w9lq03q8x448p620wphslbw4zymfxc42ydl1x7wp9dnxl5"; depends=[ape dplyr magrittr memuse pinfsc50 Rcpp stringr tibble vegan viridisLite]; }; + vcfR = derive2 { name="vcfR"; version="1.15.0"; sha256="1yj91cphin232m09wrpj8l27vxblyryh658siakz55hxjs5y85yz"; depends=[ape dplyr magrittr memuse pinfsc50 Rcpp stringr tibble vegan viridisLite]; }; + vcfppR = derive2 { name="vcfppR"; version="0.3.5"; sha256="1shk4xr1i3azbh5s13ngzny2gysa4mbkfv240ky22yqdcj3qxi37"; depends=[Rcpp]; }; vcmeta = derive2 { name="vcmeta"; version="1.2.0"; sha256="070qlyhalnkvz1z2sd5ndirn6py44dfc95ncs7ddvlhpd8lxp6xm"; depends=[ggplot2 mathjaxr Rdpack]; }; vcov = derive2 { name="vcov"; version="0.0.1"; sha256="1w89mr8dk6436bxap28rszajgm9k7sjfqsr1i4p68dlhw8zk4yq1"; depends=[]; }; vcpen = derive2 { name="vcpen"; version="1.9"; sha256="0gg5ln9r7i8rh91pf7789fic4aah22jc259qyg606bax2w57qmi5"; depends=[knitr Rcpp RcppArmadillo]; }; vcr = derive2 { name="vcr"; version="1.2.2"; sha256="0vqq4lwgk9ss3x2vhkmgcymdwfppxjbaycm7pwik70sz9pkdk2d4"; depends=[base64enc crul httr R6 rprojroot urltools webmockr yaml]; }; - vctrs = derive2 { name="vctrs"; version="0.6.4"; sha256="1j01s27ybzn60p17y7k5n5dzsmjqhgjy634sv0dx4977aqiik04a"; depends=[cli glue lifecycle rlang]; }; - vctsfr = derive2 { name="vctsfr"; version="0.1.0"; sha256="0g436m3dkyli06asjr4kdbhdx7mq0pcclmfpvblb5bsqrh5944i1"; depends=[ggplot2 shiny]; }; + vctrs = derive2 { name="vctrs"; version="0.6.5"; sha256="00p4r1z4xc05m25y0qa7svr67lbypcfqyp2b0ja9asgx90i7s5j3"; depends=[cli glue lifecycle rlang]; }; + vctsfr = derive2 { name="vctsfr"; version="0.1.1"; sha256="048bkayjhgy6h47pmy0cld9yzmrg93mk3rv5afpn518c42gjsc69"; depends=[ggplot2 shiny]; }; vcvComp = derive2 { name="vcvComp"; version="1.0.2"; sha256="0mip0v8gv358aadc3b4913dcz27kscx3dv15nwns20pan5jvyhv2"; depends=[]; }; vdar = derive2 { name="vdar"; version="0.1.3-2"; sha256="061ahwf8gyjqs5j9mkqnpn7899mivn4qbygnnzihmv065xj5vpd9"; depends=[compositions]; }; vdg = derive2 { name="vdg"; version="1.2.2"; sha256="0fdqmvzw6dd18w653kfvnw16489jpsyl1395xffhm8rz1dqkrhj1"; depends=[ggplot2 gridExtra proxy quantreg]; }; vdiffr = derive2 { name="vdiffr"; version="1.0.7"; sha256="1ljj94swqgs8pvicdrlals6pckm7knwfvxxmmbhhi2zfcxdjwhzd"; depends=[cpp11 diffobj glue htmltools lifecycle rlang testthat xml2]; }; vec2dtransf = derive2 { name="vec2dtransf"; version="1.1.3"; sha256="0sxsbm1q7v58b907xvpppwfljmqm2pyrch2zc82nmb10wfiha8k8"; depends=[sp]; }; veccompare = derive2 { name="veccompare"; version="0.1.0"; sha256="03nyyxvhhwfxxg5w6qflk7q234ipbhj9fd4abcp50sxz3diabch1"; depends=[corrplot gtools pander purrr qgraph reshape2 VennDiagram]; }; - vecsets = derive2 { name="vecsets"; version="1.3.1"; sha256="1wp5pbjgw6smivmf4rgy0y2gspgbcwb2js8y657jd1spzl5bbvfr"; depends=[pracma]; }; + vecsets = derive2 { name="vecsets"; version="1.4"; sha256="0v6l8kmshb6ipcvjx9i26mwrc810z7lv4ys8qqyzzpz0wwnlii7m"; depends=[pracma]; }; + vectorbitops = derive2 { name="vectorbitops"; version="1.1.2"; sha256="1hgygcmyfaib72j9ck88312f4nqk0s5m01jqyizsy1j3ss8jaqi6"; depends=[]; }; vectorwavelet = derive2 { name="vectorwavelet"; version="0.1.0"; sha256="1z0gl28hgrqgx0ynv248a80fh190pm15c9cg1l1665acrw62kqs7"; depends=[biwavelet fields foreach iterators maps Rcpp spam]; }; vegalite = derive2 { name="vegalite"; version="0.6.1"; sha256="0dlzhvrg3nj6knyycdgg3d1vzq3dn9vxb34fjin9hzilszqmarbk"; depends=[base64 clipr digest htmltools htmlwidgets jsonlite magrittr webshot]; }; vegan = derive2 { name="vegan"; version="2.6-4"; sha256="01hxlb5sy0d28ajq993fqs4z0qjcyl610d0ahjyjpbkrpszd92jx"; depends=[cluster lattice MASS mgcv permute]; }; @@ -19460,7 +19748,7 @@ in with self; { vein = derive2 { name="vein"; version="1.0.2"; sha256="0g0j9whhli4hhv4minciyj0dpnms85lzy6parlppjb2wfsxyp2aa"; depends=[cptcity data_table dotCall64 sf units]; }; velociraptr = derive2 { name="velociraptr"; version="1.1.0"; sha256="0a67vmv05cxc9f27aqzr6nkgy2mj3fhykwj5nb23qwfqa669a5hi"; depends=[sf]; }; vembedr = derive2 { name="vembedr"; version="0.1.5"; sha256="1hmwgrp9vj7qwmsvnvgry8h707kj53wp5chpxqsbgxi9jryabpc0"; depends=[assertthat glue htmltools httr lifecycle magrittr stringr]; }; - venn = derive2 { name="venn"; version="1.11"; sha256="054ky4sh47p5fw271ag79p84vdxm5bqa6gw0dvkz2y00r73ibn9k"; depends=[admisc]; }; + venn = derive2 { name="venn"; version="1.12"; sha256="07bjv0m21gljdr3sj1z9rp6xhgxspah9j1m3a8rskvlwv6dvd1pd"; depends=[admisc]; }; venneuler = derive2 { name="venneuler"; version="1.1-3"; sha256="0znr5l41mpappv2agji4nxr42vydhd35jbmjwzwapgahff2arlr1"; depends=[rJava]; }; vennplot = derive2 { name="vennplot"; version="1.0"; sha256="0x59awa1zsjwk5qb1jzv6d2mn2fm4aq1lq8zlbnf1da0h4837yab"; depends=[Rcpp rgl stringr]; }; verbaliseR = derive2 { name="verbaliseR"; version="0.1"; sha256="16ndjpsfp700h5wz3y7hram6x8lp4piykcrz7y4ybrkgwyaik851"; depends=[stringr]; }; @@ -19468,11 +19756,13 @@ in with self; { verhoeff = derive2 { name="verhoeff"; version="0.4.0"; sha256="0kpxpl5s5342ajg22cwb7y9ks240drp37q1g67n19krdy6ih14kz"; depends=[]; }; verification = derive2 { name="verification"; version="1.42"; sha256="0pdqvg7cm9gam49lhc2xy42w788hh2zd06apydc95q2gj95xnaiw"; depends=[boot CircStats dtw fields MASS]; }; vermeulen = derive2 { name="vermeulen"; version="0.1.1"; sha256="10jlgrwpgkfiwlyli6mpd0wavi71h39sj6mklnvfskhnblvqdrz8"; depends=[memoise]; }; + versioning = derive2 { name="versioning"; version="0.1.0"; sha256="0r4ffd1s9warfan7ldcd6sn98qimsllf77dhxfygblr8spxcl7h5"; depends=[assertthat data_table foreign glue haven R6 sf terra yaml]; }; versions = derive2 { name="versions"; version="0.3"; sha256="0zm49j785dgv7fyr1yl9q5f0dsk8hhpim5q5bpkgrkzv7pwjribd"; depends=[]; }; versionsort = derive2 { name="versionsort"; version="1.1.0"; sha256="00r0h2iqlfq0nidqbhx4fv29rlppfx43jv2n2zp38lpx5vbqjhnj"; depends=[]; }; + versus = derive2 { name="versus"; version="0.2.1"; sha256="13yqdacccf5wq0hmn8mm00n5knas1xjdhc0jqh1q0ga5bqps7jaz"; depends=[cli collapse data_table dplyr glue pillar purrr rlang tibble tidyselect vctrs]; }; vesselr = derive2 { name="vesselr"; version="0.2.1"; sha256="1wzprnpiv04gxhqgki36gp1a0xj9l3mchllphwkfsdja4axq3prk"; depends=[oro_nifti pbapply pbmcapply]; }; - vetiver = derive2 { name="vetiver"; version="0.2.4"; sha256="19yz8p4w3rqyzsr2xb8ryav566b2321zy3h34gaxlz0am0wsryw3"; depends=[bundle butcher cereal cli ellipsis fs generics glue hardhat lifecycle magrittr pins purrr rapidoc readr rlang tibble vctrs withr]; }; - vetr = derive2 { name="vetr"; version="0.2.15"; sha256="0858wivgdbjs4qww6szi32ifc4l0a3nx0c0zf2778d4nxs9zgxk2"; depends=[]; }; + vetiver = derive2 { name="vetiver"; version="0.2.5"; sha256="04gpr4h4vzr0xkgf4x8drpkg1j8f1w84h4ndc4ry15n7ayim4s0b"; depends=[bundle butcher cereal cli ellipsis fs generics glue hardhat lifecycle magrittr pins purrr rapidoc readr rlang tibble vctrs withr]; }; + vetr = derive2 { name="vetr"; version="0.2.16"; sha256="0dpk2mfa6xk8b0zvanymgr00mydjvqmmax6n7cfvxd0gviwbfap4"; depends=[]; }; vfcp = derive2 { name="vfcp"; version="1.4.0"; sha256="0zj1ihqdx5x1695al1xyi8k001yw8x7gdss72myxlnh7b4flnp9m"; depends=[copula extraDistr stringr]; }; vfinputs = derive2 { name="vfinputs"; version="0.1.0"; sha256="10fh6ybsqy9xm7gwl0kska0pgk810sgq9kvf86gmnm0pmrcqzsdh"; depends=[htmltools jsonlite scales shiny]; }; vfprogression = derive2 { name="vfprogression"; version="0.7.1"; sha256="0kgw1jx0rl9v8qy8qg7zjzdgvwqdi7k1lsvsx3lnpw4sfpkzsq23"; depends=[]; }; @@ -19491,12 +19781,12 @@ in with self; { vimp = derive2 { name="vimp"; version="2.3.3"; sha256="069pcxzavi213idpslnc1skylsb1wn6xldajnn54prlwq9hkfb19"; depends=[boot data_table dplyr magrittr MASS rlang ROCR SuperLearner tibble]; }; vimpclust = derive2 { name="vimpclust"; version="0.1.0"; sha256="0ly7piz7q88sh2g7zq5b2pqph9467b4fclgq9amm0m7xc8vrv4f9"; depends=[ggplot2 mclust PCAmixdata Polychrome rlang]; }; vindecodr = derive2 { name="vindecodr"; version="0.1.1"; sha256="0yvchdf90l8lkzyba5wrpma6vjcgf19li159s8s79y8sgp5pyx7p"; depends=[httr]; }; - vinereg = derive2 { name="vinereg"; version="0.9.1"; sha256="11k20h2kldlpf880znkjw3afxg9sr5zl7ssll5agl0kxcxi82fwx"; depends=[assertthat BH kde1d Rcpp RcppEigen RcppThread rvinecopulib wdm]; }; + vinereg = derive2 { name="vinereg"; version="0.9.2"; sha256="1abfshyg61faar7hk2357wic7hy4m39g7f7zwccil2h0ihr3dngv"; depends=[assertthat BH kde1d Rcpp RcppEigen RcppThread rvinecopulib wdm]; }; vines = derive2 { name="vines"; version="1.1.5"; sha256="057d2fdh03cq9kh4vz94arqscahmz14xbr2g59l0vn205lnyilf1"; depends=[ADGofTest copula cubature TSP]; }; violinplotter = derive2 { name="violinplotter"; version="3.0.1"; sha256="1xy57mycdsr9qr48n1jrw0nzwz848r0xcns864d8gyc8zikp3x6a"; depends=[]; }; vioplot = derive2 { name="vioplot"; version="0.4.0"; sha256="1db7g0378jbcd6ssb7afff4y4r0v472qnb625hfwixx4wf1v8aap"; depends=[sm zoo]; }; vip = derive2 { name="vip"; version="0.4.1"; sha256="0n87g2z354az0scsf7w7n144p77yv1mk96w5vacn25p7jlldsram"; depends=[foreach ggplot2 tibble yardstick]; }; - vipor = derive2 { name="vipor"; version="0.4.5"; sha256="112gc0d7f8iavgf56pnzfxb7hy75yhd0zlyjzshdcfbnqcd2a6bx"; depends=[]; }; + vipor = derive2 { name="vipor"; version="0.4.7"; sha256="17hb6y1i9bva0fr4k9m6wncmnzdjad1b7fhsvfhva4xavpll3bds"; depends=[]; }; viraldomain = derive2 { name="viraldomain"; version="0.0.2"; sha256="0wcardcv3r0v9v80c93wmkkmqr3abb60cn1yny4vv0ls41a08g14"; depends=[applicable dplyr earth ggplot2 nnet parsnip recipes vdiffr workflows]; }; viralmodels = derive2 { name="viralmodels"; version="1.1.0"; sha256="0k5hmg52zkmqvf8wk0hiyykvm179a29w4969ajjnf4qrsgiiaia0"; depends=[dplyr earth kernlab nnet parsnip recipes rsample tidyselect tune vdiffr workflows workflowsets]; }; viralx = derive2 { name="viralx"; version="1.1.0"; sha256="054w54m0k1z6jlfz6pp3nlarnady9kndvmmr5ibp7j14jyg7jhxy"; depends=[DALEX DALEXtra dplyr earth Formula parsnip plotmo plotrix recipes rsample TeachingDemos vdiffr workflows]; }; @@ -19507,7 +19797,7 @@ in with self; { virtuoso = derive2 { name="virtuoso"; version="0.1.8"; sha256="1smb8sjfqcp3jflplgf92swasxzrp72fnnqwyisf87pjknm91qsc"; depends=[curl DBI digest fs ini odbc processx ps rappdirs]; }; virustotal = derive2 { name="virustotal"; version="0.2.2"; sha256="020kwhki5740857zd24xm18dg3whzhf527qhmfx1cxyqyld404wy"; depends=[httr plyr]; }; visNetwork = derive2 { name="visNetwork"; version="2.1.2"; sha256="116w3l65lgv18xzav5zz1pbgwpwck66n9cjpja9axrl9zi19vja7"; depends=[htmltools htmlwidgets jsonlite magrittr]; }; - visR = derive2 { name="visR"; version="0.3.1"; sha256="0s403njzcasp6l55k1lzh3jmd5ajdfblg312pwl8b5w3zpqp32jg"; depends=[broom cowplot dplyr ggplot2 gridExtra gtable kableExtra rlang survival tidyr]; }; + visR = derive2 { name="visR"; version="0.4.0"; sha256="0nffasj21yh3yv30l381xn5krs4zn43ic0naxwgnqwax847mxnc3"; depends=[broom cowplot dplyr DT forcats ggplot2 gridExtra gt gtable kableExtra knitr lifecycle rlang survival tibble tidycmprsk tidyr]; }; visStatistics = derive2 { name="visStatistics"; version="0.1.1"; sha256="0lp6sf2wrjjp1zh77yhlgr9sfpls54z0bny0l36v98ik4qykky0f"; depends=[Cairo multcompView nortest vcd]; }; visTree = derive2 { name="visTree"; version="0.8.1"; sha256="1l07zfr2hagjpdxfw5290wa3ki4bl7iqxrrhda0d1bp3wmwfz0ai"; depends=[colorspace partykit rpart]; }; visa = derive2 { name="visa"; version="0.1.0"; sha256="1mx7nbbpxs4fdp781a75qvffa42dx2n6anslbfs9bnprmvzmljqr"; depends=[ggplot2 ggpmisc Matrix RColorBrewer reshape2]; }; @@ -19519,31 +19809,31 @@ in with self; { visdat = derive2 { name="visdat"; version="0.6.0"; sha256="1675az0lfvmwzh9c3fknnk0n2kz1w7hy0kdj3a37n5j1knxwsjhh"; depends=[cli dplyr forcats ggplot2 glue magrittr purrr readr scales tibble tidyr]; }; visit = derive2 { name="visit"; version="2.2"; sha256="0mrwah122w9dyivyzs8xlv6vq9w8bpr468zjjw5q974wk7h31mk4"; depends=[BH Rcpp RcppEigen RcppParallel rstan rstantools sqldf StanHeaders]; }; visreg = derive2 { name="visreg"; version="2.7.0"; sha256="070yhyxxh3w16i54k790n47bgcjn4b10b6g1z553x6afjc3l3a6d"; depends=[lattice]; }; - vistime = derive2 { name="vistime"; version="1.2.3"; sha256="18gqx71mpjsccfnab11j3g8wl11x2sk7bbjbcpi23qsk5d7sy112"; depends=[assertive_types ggplot2 ggrepel plotly RColorBrewer rlang]; }; - vistla = derive2 { name="vistla"; version="2.0.0"; sha256="1c6mk5wx0zj43m8k67cjlkzwb4jqnszjwmpkcmk7qgiqkfn1brmn"; depends=[]; }; + vistime = derive2 { name="vistime"; version="1.2.4"; sha256="14nm2p8yyl0zcf4al31cvnji4a9fi6zs1hvcjpa7dcyjdxd6yfyi"; depends=[assertthat ggplot2 ggrepel plotly RColorBrewer rlang]; }; + vistla = derive2 { name="vistla"; version="2.0.1"; sha256="0chlmlq6ydkb36dmfx5j4syhm9s3sqhhr20fxyp3jhbhv19c83bj"; depends=[]; }; vistributions = derive2 { name="vistributions"; version="0.1.2"; sha256="1nzkbyqks38n7gp55iqhrlxqyfwxk4fvqzi9vsb45h0m0hlmwhxr"; depends=[ggplot2 magrittr]; }; visualFields = derive2 { name="visualFields"; version="1.0.1"; sha256="1z62xappwjdv9f7ql5spydkb626rdj3hvpvzy3d71fwm0y3qwki3"; depends=[boot combinat deldir dplyr DT gtools Hmisc htmlTable oro_dicom plotrix polyclip pracma rlang shiny shinyjs XML]; }; - visualize = derive2 { name="visualize"; version="4.4.0"; sha256="1k3jpvj1yysxc4g1a1w3m1y91104aqxqv8jh9qdd23gwy7a29525"; depends=[]; }; + visualize = derive2 { name="visualize"; version="4.5.0"; sha256="0bsdyqakidgdgxhzyl6w0pg3mnkj84550c4s7dwcwjjqqjsr9bj1"; depends=[]; }; visualpred = derive2 { name="visualpred"; version="0.1.0"; sha256="19jq9h9kiv4vbzqz8zrv5gqb1bprq5jy7mcxvdwpfnna2rja6q4z"; depends=[data_table dplyr e1071 FactoMineR gbm ggplot2 ggrepel magrittr MASS MBA mltools nnet pROC randomForest]; }; visvow = derive2 { name="visvow"; version="1.3.10"; sha256="0c5gwc8p3kb36kcfswn7k6v8bvm2d9dw4hxd61gvq28s1j2f1492"; depends=[Cairo dplyr DT effectsize formattable ggdendro ggplot2 ggrepel MASS PBSmapping plot3D plyr pracma psych Rdpack readxl Rtsne shiny shinyBS shinybusy splitstackshape svglite tidyr tikzDevice vegan WriteXLS]; }; visxhclust = derive2 { name="visxhclust"; version="1.1.0"; sha256="1wx16mg5g58p4mgf5y776i5ahgpqqjy4wbfqhfjph36mrhs6qr22"; depends=[bsplus circlize cluster clValid ComplexHeatmap dendextend dplyr DT dunn_test fastcluster ggplot2 kableExtra knitr patchwork RColorBrewer readr shiny shinycssloaders shinyhelper tidyr]; }; vita = derive2 { name="vita"; version="1.0.0"; sha256="114p2lzcr8rn68f0z4kmjdnragqlmi18axda9ma4sbqh8mrmjs9v"; depends=[randomForest Rcpp]; }; - vitae = derive2 { name="vitae"; version="0.5.3"; sha256="19qcympcs9w9klrvhz5ls4p6186dcddv5dv7kn7jkc0js84i9sbv"; depends=[dplyr glue jsonlite knitr pillar rlang rmarkdown tibble vctrs xfun yaml]; }; + vitae = derive2 { name="vitae"; version="0.5.4"; sha256="11vp146fqxcq10kpsyrxmyc3i2kcwx15swgill61zs6g9l54asky"; depends=[dplyr glue jsonlite knitr pillar rlang rmarkdown tibble vctrs xfun yaml]; }; vitality = derive2 { name="vitality"; version="1.3"; sha256="17micfmlksnw167vavvhlk431fm20k74y5ggs47pgz5fwpm854zp"; depends=[]; }; - vivainsights = derive2 { name="vivainsights"; version="0.4.2"; sha256="16iynrx9jk8zk8592fzbhbr42ppgpb159y38vx7sql901pxrfpj5"; depends=[data_table dplyr ggplot2 ggraph ggrepel ggwordcloud htmltools igraph lifecycle magrittr markdown networkD3 purrr reshape2 rmarkdown scales tidyr tidyselect tidytext wpa]; }; + vivainsights = derive2 { name="vivainsights"; version="0.5.0"; sha256="11b6289ikc12ncgh71ynmx242l43cqi0v8hn3r86pipxipd6q156"; depends=[data_table dplyr ggplot2 ggraph ggrepel ggwordcloud htmltools igraph lifecycle magrittr markdown networkD3 purrr reshape2 rmarkdown scales tidyr tidyselect tidytext wpa]; }; vivaldi = derive2 { name="vivaldi"; version="1.0.1"; sha256="1dvihjc6vjzg2w1j0q6vjhlhpwkknwsd97lpbqbfpacpp337mvx8"; depends=[dplyr ggplot2 glue magrittr plotly seqinr tidyr tidyselect vcfR]; }; vivid = derive2 { name="vivid"; version="0.2.8"; sha256="0zl9p8dsrz9lmylnfxj4b50g1lvk7563ss0w3k1pidkwrs4kazin"; depends=[colorspace condvis2 DendSer dplyr flashlight GGally ggalt ggnewscale ggplot2 igraph RColorBrewer sp]; }; vivo = derive2 { name="vivo"; version="0.2.1"; sha256="1cfval06byviw7himr5nql34h4jaway9gb6dzya3v994p7v851cg"; depends=[DALEX ggplot2]; }; - vizdraws = derive2 { name="vizdraws"; version="1.2"; sha256="1r4kn8ki4ymqg87j223fs6fs9vyscc5bsfbnc4v9gvjy96jjxy3h"; depends=[dplyr htmlwidgets magrittr stringr]; }; + vizdraws = derive2 { name="vizdraws"; version="1.4.2"; sha256="03cchq086crwxmapjh35wna8i6ryxshq9736r1m0jgkzh7z23hfj"; depends=[dplyr htmlwidgets magrittr stringr]; }; vkR = derive2 { name="vkR"; version="0.2"; sha256="1pk444fcw4yyv2dnfrw9vynbpc4gwr5yv9jd41djp9yipdf6d53l"; depends=[httr jsonlite purrr XML]; }; vlad = derive2 { name="vlad"; version="0.2.2"; sha256="0c3zfjm5nj7iisfnl822sk8wdszv6hcsaf51sn7aqnlp579hq2jk"; depends=[BH checkmate dplyr magrittr Rcpp RcppArmadillo tidyr]; }; vlda = derive2 { name="vlda"; version="1.1.5"; sha256="17xn8qqh043dm05ib3h4l1qx07wxncf5d06x9l1wl6jbkvnsm2nq"; depends=[dplyr ggiraph ggplot2 ggrepel ggsci]; }; vmdTDNN = derive2 { name="vmdTDNN"; version="0.1.1"; sha256="08bdihlf2lj1wfxilshxww3sav7c35qiqzs468mdahbn4vnzbngr"; depends=[forecast nnfor VMDecomp]; }; vmeasur = derive2 { name="vmeasur"; version="0.1.4"; sha256="17rqr8zpfnq3f0d3yi9w09wvrbq79g4w7rkqf4l2wyd8ic5npwb0"; depends=[av crayon doFuture dplyr foreach future ggplot2 ggpubr imager magrittr pdftools pracma progressr purrr readr rlang scales stringr svDialogs tidyr]; }; vmr = derive2 { name="vmr"; version="0.0.6"; sha256="0vm4wxf9zb2xgjd9xam3gy6mqr621x922ldshrxs4cibaag3lq5x"; depends=[curl jsonlite]; }; - vntrs = derive2 { name="vntrs"; version="0.1.0"; sha256="0ffjjzcs7i4zli7bn83gkgi0q7dmgyxrhv9l3gdambma9hsig45c"; depends=[trust]; }; + vntrs = derive2 { name="vntrs"; version="0.1.1"; sha256="1068l5p7qqjp69yzp72zp975cr2zpnfbnik6h109lhw554m4ckll"; depends=[trust]; }; vocaldia = derive2 { name="vocaldia"; version="0.8.4"; sha256="1nr1w85m4xhk6777iqww94mb82c3smfhr96mybpi9m1kk7f6rv0i"; depends=[]; }; - voi = derive2 { name="voi"; version="1.0"; sha256="1ncxlswjh5z239kipb3mq5j0xvxawhrxd4w6jmdz150gq510nccq"; depends=[dbarts earth ggplot2 gridExtra Matrix mgcv mvtnorm posterior progress]; }; + voi = derive2 { name="voi"; version="1.0.2"; sha256="0fxaspvy64791dh9d00slfqi8wwip7353cf68kya0rkm2b12kr4m"; depends=[dbarts earth ggplot2 gridExtra Matrix mgcv mvtnorm posterior progress]; }; voice = derive2 { name="voice"; version="0.4.21"; sha256="0fh1k0596npm6yah992g3hc79g6lh12b7k97nnxlm1pgpdbb503v"; depends=[dplyr R_utils reticulate seewave tibble tidyselect tuneR wrassp zoo]; }; voiceR = derive2 { name="voiceR"; version="0.1.0"; sha256="1bc2h04i9l76wqrw93brg5ivpgd0pq20zq2nq8x7p851jfxz84p4"; depends=[doParallel DT foreach FSA ggplot2 ggpubr ggthemes gridExtra gtable kableExtra knitr MASS phia plotly rcompanion rlang rmarkdown seewave shiny shinyFiles shinyjs soundgen stringr tuneR xfun]; }; vol2birdR = derive2 { name="vol2birdR"; version="1.0.1"; sha256="0f6zjrsi7slw7wx84q4iq1afmwclmwjq8ly1r4m9l2hkfg3nclim"; depends=[assertthat pkgbuild Rcpp RcppGSL rlang withr]; }; @@ -19557,8 +19847,8 @@ in with self; { vortexRdata = derive2 { name="vortexRdata"; version="1.0.5"; sha256="0b47q3aslz4110a1bfaa103i098y2ngzrjh01rwasq3gd6xbif9n"; depends=[]; }; voson_tcn = derive2 { name="voson.tcn"; version="0.5.0"; sha256="1fylp5770by5ybpda6n8c3y8n7zsmc62f5q11k0ndh5kp7ka11cb"; depends=[dplyr httr jsonlite openssl progress rlang stringr tibble tidyr]; }; vosonSML = derive2 { name="vosonSML"; version="0.32.7"; sha256="1fs939zq2vnilc3fp6cplsqk0iz71i8xjdcbvspsccw7rsdp2qs8"; depends=[data_table dplyr httr jsonlite lubridate purrr rlang stringr textutils tibble tidyr]; }; - vote = derive2 { name="vote"; version="2.3-2"; sha256="12kvz83ncansrsvw4mrws6fafn9fy6c0nvqvknrzl08kv290c9dr"; depends=[data_table fields formattable knitr]; }; - voteSim = derive2 { name="voteSim"; version="0.1.0"; sha256="00i6jkfvb7dk6mbhl9hv08mhwj6sjkakmv02ybwxw1hy9gqbsacs"; depends=[extraDistr GenOrd truncnorm]; }; + vote = derive2 { name="vote"; version="2.4-3"; sha256="0mayys5l755a0wdh49llpw37ssp88ifariivjghcd16i2yvpmwxz"; depends=[data_table fields formattable knitr]; }; + voteSim = derive2 { name="voteSim"; version="0.1.1"; sha256="0wqyckpmwwyfmwqhmml62nf781zakbiir727jac1bc1iawxm9y7k"; depends=[extraDistr GenOrd truncnorm]; }; voteogram = derive2 { name="voteogram"; version="0.3.2"; sha256="16bhnf9p2sanbcsdmdjb4iqca7hx4ghd40psxavndv1vkhw3cv0r"; depends=[dplyr ggplot2 jsonlite scales tibble]; }; votesmart = derive2 { name="votesmart"; version="0.1.2"; sha256="184q553p8n76jch4xiyfsqbczbjza3v9s8xsd8zwckxq5j2cgyvp"; depends=[dplyr glue httr jsonlite lubridate magrittr purrr snakecase stringr tidyr]; }; votesys = derive2 { name="votesys"; version="0.1.1"; sha256="1z7cx3rj3bfrkb6jkmf1m1wad5ff46zrab5vhk69wf3jbwd9h920"; depends=[data_table gtools Matrix]; }; @@ -19569,7 +19859,7 @@ in with self; { vpc = derive2 { name="vpc"; version="1.2.2"; sha256="15s9f6hmqawv2594xqv58hnqg2wm1fm8qaj8h9k4m55cx4sf1hik"; depends=[classInt dplyr ggplot2 MASS readr stringr survival tidyr]; }; vprr = derive2 { name="vprr"; version="0.2.3"; sha256="02hx3wbj921fsir8yldkgcygci01w1171bxsxi2khplck4gkqn9i"; depends=[cmocean dplyr ggplot2 gridExtra gsw interp lubridate magick metR oce stringr tidyr usethis withr]; }; vrnmf = derive2 { name="vrnmf"; version="1.0.2"; sha256="0n0kmzhygaii9kipcmr943s0vcf8brxgsk25m9illd4fij6nwpp2"; depends=[ica lpSolveAPI Matrix nnls quadprog]; }; - vroom = derive2 { name="vroom"; version="1.6.4"; sha256="0kg25b3drfv4dgvciwsv6wgw6v0lf1maigyhllw9hh114rmzjild"; depends=[bit64 cli cpp11 crayon glue hms lifecycle progress rlang tibble tidyselect tzdb vctrs withr]; }; + vroom = derive2 { name="vroom"; version="1.6.5"; sha256="0qapkgn5k9g07l48scgln8y1k6fkkzsq5la5fjfh9if9b0ga5p3v"; depends=[bit64 cli cpp11 crayon glue hms lifecycle progress rlang tibble tidyselect tzdb vctrs withr]; }; vrtest = derive2 { name="vrtest"; version="1.2"; sha256="1ln1ayh18q5lxiavznq19ccwb90dviw5ncbwpbghiawa1i0q42d2"; depends=[]; }; vscc = derive2 { name="vscc"; version="0.7"; sha256="082jxk8fw4rplal9672bi6rr1jwpb5h6clrdlv9jj4ffvlbg6vaz"; depends=[ManlyMix mclust MixGHD teigen]; }; vsd = derive2 { name="vsd"; version="0.1.0"; sha256="18whnvary4glblzx1vxf3yzsllnnnbnyijwhbw7bi3agppnwrf22"; depends=[dplyr flexsurv ggplot2 ggpubr magrittr muhaz survival survminer]; }; @@ -19577,7 +19867,7 @@ in with self; { vsp = derive2 { name="vsp"; version="0.1.1"; sha256="0aa3vqzazh0x5irbmqh9ac1xiprwnbgbrjl9bybxzynl91hwg9yw"; depends=[ggplot2 glue invertiforms LRMF3 magrittr Matrix rlang RSpectra tibble withr]; }; vstdct = derive2 { name="vstdct"; version="0.2"; sha256="0g26cplp5vjppyw8w37vdy3wah3i9wi14j64vl7i8d2fjbhqhqxp"; depends=[dtt MASS nlme]; }; vstsr = derive2 { name="vstsr"; version="1.1.0"; sha256="071nfxkwwpbp2d8khxq7d1pp268pa1fcfj619bs6xwg4wk9srr3k"; depends=[httr jsonlite R6 RCurl]; }; - vtable = derive2 { name="vtable"; version="1.4.5"; sha256="158sywrzqkiy0n7g7zk5d8k51lsc6x1886g5sbr8n0khvdhpnfs6"; depends=[haven kableExtra knitr rstudioapi sjlabelled]; }; + vtable = derive2 { name="vtable"; version="1.4.6"; sha256="1via6iz6ykw02wh5aagr9vqbzlqjvc5iyzfjr13yzyxarpi8zpdr"; depends=[haven kableExtra knitr rstudioapi sjlabelled]; }; vtreat = derive2 { name="vtreat"; version="1.6.4"; sha256="1b32rrmnkpm53vgdg479q4wwzlgcisbz9x24rvcn42pjm9r8wwf8"; depends=[digest wrapr]; }; vtree = derive2 { name="vtree"; version="5.6.5"; sha256="0qszya11qh2xzq1blbrcli3l8hhf0dannhh2hn3gi59c9dn3jr16"; depends=[DiagrammeR DiagrammeRsvg htmlwidgets rsvg shiny utf8]; }; vtype = derive2 { name="vtype"; version="0.8"; sha256="0j070bn86a6hlg99h2qaf0dlbnjjsmx1zdcmvl3acymr31bqyvrj"; depends=[randomForest]; }; @@ -19590,7 +19880,7 @@ in with self; { vvmover = derive2 { name="vvmover"; version="1.5.10"; sha256="1aaky8vs9yl9k3qfd3lm4wj234gp5z0pgff1lfqj2p0av18q6nn8"; depends=[dplyr readr readxl]; }; vvsculptor = derive2 { name="vvsculptor"; version="0.4.10"; sha256="076fdzhr5b39k1vavj3jf7897vpdjgfbf8fxxqi6y4cy0pz4iisi"; depends=[dplyr]; }; vvshiny = derive2 { name="vvshiny"; version="0.1.1"; sha256="015rac6hz6k5wrg75abiyicjpljfs3cxibrala4dm5jxnwrm79sa"; depends=[dplyr DT forcats ggalluvial ggplot2 ggpubr htmltools htmlwidgets magrittr plotly purrr rlang scales shiny shinycssloaders shinydashboard shinydashboardPlus shinyWidgets stringr]; }; - vvtableau = derive2 { name="vvtableau"; version="0.2.0"; sha256="0vlqp8m8ygknf1dak35w0kdzhsinazzwqp92488l9f447r8r7gz8"; depends=[data_table dplyr httr jsonlite magrittr purrr stringr tidyr XML xml2]; }; + vvtableau = derive2 { name="vvtableau"; version="0.4.0"; sha256="027fq4mh3ls9a8mb5lpr12dxncwmz1dl9p5ajv5ig2f18s9saq9z"; depends=[data_table dplyr httr jsonlite magrittr purrr stringr tidyr XML xml2]; }; vvtermtime = derive2 { name="vvtermtime"; version="0.0.1"; sha256="0c7cry87wgk86wydrw0l8icc25lx5fcxzm1wyfs2ls8ppmpkz3l7"; depends=[httr jsonlite magrittr]; }; vwline = derive2 { name="vwline"; version="0.2-2"; sha256="1hilr996xn5wh8kfyab55w2i1c02a8x909h4ahag5q6s7603qng5"; depends=[gridBezier polyclip]; }; wCorr = derive2 { name="wCorr"; version="1.9.8"; sha256="0ja51w17q80r7xpwqhzn416b48ji9178026wf5ibm4s0hsfz7vb2"; depends=[minqa mnormt Rcpp RcppArmadillo]; }; @@ -19605,18 +19895,19 @@ in with self; { waiter = derive2 { name="waiter"; version="0.2.5"; sha256="0ya92qr25ssfkzn888b7rr8rn0304f3gz4h4pnc2a95rknbmxhls"; depends=[htmltools R6 shiny]; }; wakefield = derive2 { name="wakefield"; version="0.3.6"; sha256="1rssh6v8m6fim2pvm4cjw8cbni77bv5qp0rwi6vwdl3jhi5zws7n"; depends=[chron dplyr ggplot2 stringi]; }; wal = derive2 { name="wal"; version="0.1.0"; sha256="0n81c2i2wzmy33kk1k4zjjgv1irh8xqw05clif8n86qr4m0a01sv"; depends=[freesurferformats imager jpeg png spacesXYZ]; }; - waldo = derive2 { name="waldo"; version="0.5.1"; sha256="0inzdwna22axhjw0jdrk800g7zbkpcs7g1cmdi83r7j4zxn0ggs5"; depends=[cli diffobj fansi glue rematch2 rlang tibble]; }; + waldo = derive2 { name="waldo"; version="0.5.2"; sha256="019fvypq36kwvr2znlr0fd9f2ihb08rgigf6ypdybry5n8daxkc2"; depends=[cli diffobj fansi glue rematch2 rlang tibble]; }; walkboutr = derive2 { name="walkboutr"; version="0.4.0"; sha256="0w1fav70w9y44p9d32qfsyihzlprmcxwcrbjg0v9fdm31w498qgj"; depends=[data_table dplyr geosphere ggforce ggplot2 lubridate lwgeom magrittr measurements sf sp tidyr]; }; walker = derive2 { name="walker"; version="1.0.8"; sha256="1y8jj3kf8wrkw3rkai0scnakb9cyb8dbvhji3vprs3cyprcrkf4r"; depends=[bayesplot BH coda dplyr ggplot2 Hmisc KFAS loo Rcpp RcppArmadillo RcppEigen RcppParallel rlang rstan rstantools StanHeaders]; }; walkscore = derive2 { name="walkscore"; version="0.1.2"; sha256="0ayqkmj7iramg234n3ygvssqjy70jw7x327xjzn2izdyfww59z8k"; depends=[dplyr httr tidyr]; }; walkscoreAPI = derive2 { name="walkscoreAPI"; version="1.2"; sha256="1c2gfkl5yl3mkviah8s8zjnqk6lnzma1yilxgfxckdh5wywi39fx"; depends=[]; }; + wallace = derive2 { name="wallace"; version="2.1.1"; sha256="03yqm4zxc2hglw8n8ababv5y8nlf9ynj3c9j557s571mf73r00jk"; depends=[dplyr DT ecospat ENMeval knitcitations leafem leaflet leaflet_extras magrittr RColorBrewer rJava rlang rmarkdown sf shiny shinyalert shinyjs shinyWidgets spocc spThin zip]; }; wally = derive2 { name="wally"; version="1.0.10"; sha256="1d03vxn6q7v0nsrkd7dxkkv3siysgicv6c13fkvwmypln9vsl6sl"; depends=[data_table prodlim riskRegression]; }; walmartAPI = derive2 { name="walmartAPI"; version="0.1.5"; sha256="1nng8izncj2nmmpywn1ggpzvjh8q7y3q6260qhy9kbmvrrl26spf"; depends=[dplyr glue httr magrittr purrr stringr tibble]; }; walrus = derive2 { name="walrus"; version="1.0.5"; sha256="0z674sg78rdv9rmqr7s4w9rw8diciifwr4bc2v57yfvp0n9gcys4"; depends=[ggplot2 jmvcore R6 WRS2]; }; wand = derive2 { name="wand"; version="0.5.0"; sha256="0y9xmh9a93lnadg83i223j2nf77jazz8m1ck1bmdf5jwj4vyzaqa"; depends=[]; }; warabandi = derive2 { name="warabandi"; version="0.1.0"; sha256="0b1g2fpshhkd15b6fz4v3qwf425p5ahbh57acclqq6znl1acl1hg"; depends=[flextable lubridate readtext]; }; warbleR = derive2 { name="warbleR"; version="1.1.29"; sha256="1r45syh0j0p23yqnc4fjcznrgaaw2qk2vwpl105nhin5fx8khbyc"; depends=[bioacoustics cli dtw fftw knitr monitoR NatureSounds pbapply Rcpp RCurl rjson seewave testthat tuneR]; }; - warp = derive2 { name="warp"; version="0.2.0"; sha256="0s0acddc5h14245hi1faycxp0fyvw6nlgaz2df7da4fpyd2f638f"; depends=[]; }; + warp = derive2 { name="warp"; version="0.2.1"; sha256="1gj65kgs7x63f6y2vnv13k293b52k4afbmdlcam635h9vs8da2h2"; depends=[]; }; warpMix = derive2 { name="warpMix"; version="0.1.0"; sha256="13zbl4aifhg7j5b3vpwgzgs09hr7yblz0rckmj5qh40s78j8cpfn"; depends=[fda fields lme4 MASS nlme reshape2]; }; washdata = derive2 { name="washdata"; version="0.1.3"; sha256="0m7rwwi189sbsv3144x14jqmfax30f6ri1pisy47yggmmjpdplps"; depends=[]; }; washeR = derive2 { name="washeR"; version="0.1.3"; sha256="082myz7lw9dyk4ygyj0q39n4h1gghsd1q7667ngzxa20lm0658wd"; depends=[gplots]; }; @@ -19637,23 +19928,24 @@ in with self; { wavelets = derive2 { name="wavelets"; version="0.3-0.2"; sha256="07706rsjdmzj46ib2kfm5lfk4bnm2wfw7rby0ixs6x0myyzxdl92"; depends=[]; }; wavemulcor = derive2 { name="wavemulcor"; version="3.1.2"; sha256="0a9qhcgf0l3zpwq8m476py94wb4rasy6a8xj302y6kwg3gvh1smm"; depends=[plot3D RColorBrewer waveslim]; }; waver = derive2 { name="waver"; version="0.3.0"; sha256="1yhbp1jimx33g4sjigr5vmqqrinz1mdfgvkaaj4y2gcx7sihiiwx"; depends=[geosphere sf]; }; - waves = derive2 { name="waves"; version="0.2.4"; sha256="128q1l0ishdgpa33zh77xpi79nvziix8swq1rwyawnznl9ybs29w"; depends=[caret dplyr ggplot2 lifecycle magrittr pls prospectr randomForest readr rlang scales spectacles stringr tibble tidyr tidyselect]; }; + waves = derive2 { name="waves"; version="0.2.5"; sha256="1ggpldwdgc97jp03n3z5s8hw3ib6q09yyinryz78xs798v9l4qdl"; depends=[caret dplyr ggplot2 lifecycle magrittr pls prospectr randomForest readr rlang scales spectacles stringr tibble tidyr tidyselect]; }; waveslim = derive2 { name="waveslim"; version="1.8.4"; sha256="1510xpkgrhdw394m5anxccdczjikcxazyd09ix2z73i15akyx3j0"; depends=[]; }; wavethresh = derive2 { name="wavethresh"; version="4.7.2"; sha256="0mmn8f5x8iw8vn0zsskzs3g41bm28prvzy9bmbng8va94g5795ws"; depends=[MASS]; }; waydown = derive2 { name="waydown"; version="1.1.0"; sha256="1yjx9cd8h8rsi44s7dcqrvfmsbjhw7vkg2z7bl4knsgbki0c978g"; depends=[Matrix numDeriv]; }; - waywiser = derive2 { name="waywiser"; version="0.5.0"; sha256="00bw02p6ylwm4hmgrlrd69gbbhhy8mzlkgzxchsjvjs696arypvk"; depends=[dplyr fields FNN glue hardhat Matrix purrr rlang sf spdep tibble tidyselect vctrs yardstick]; }; + waywiser = derive2 { name="waywiser"; version="0.5.1"; sha256="1ffi4422dph90lwdc72za0sj224mwwddr66awf9yicszj42a6q81"; depends=[dplyr fields FNN glue hardhat Matrix purrr rlang sf spdep tibble tidyselect vctrs yardstick]; }; wbacon = derive2 { name="wbacon"; version="0.6"; sha256="0b91h71fs07knnqrbr167wdlb1iakafbadzr4zznndwplx3ygpbz"; depends=[hexbin]; }; wbs = derive2 { name="wbs"; version="1.4"; sha256="0ibrf30riavy6shaxgiznwh4gmnkx92260gsl0d74jkys98mlxdj"; depends=[]; }; wbsd = derive2 { name="wbsd"; version="1.0.0"; sha256="16jhimsq8symf6f2awczqkaqkdmlkzhmgk01iimhkvqlx8g2v219"; depends=[Rcpp RcppEigen]; }; wbstats = derive2 { name="wbstats"; version="1.0.4"; sha256="1va3lrksr5zg4k729xvbh176f8zcp9vfrvwxcp04znyh1rvmh6vz"; depends=[dplyr httr jsonlite lifecycle lubridate magrittr readr rlang stringr tibble tidyr]; }; wbsts = derive2 { name="wbsts"; version="2.1"; sha256="07h3wqmb9ya878fwdj49r0npks0pnd3jlnzri1cmf27c691hwka4"; depends=[mvtnorm Rcpp wavelets]; }; - wcde = derive2 { name="wcde"; version="0.0.5"; sha256="1nrzfcrkrq9vff4anj94wcy3jrmjgrm4py854dm4mcsykprxwgd1"; depends=[countrycode dplyr forcats magrittr progress purrr readr stringr tibble tidyr]; }; - wcep = derive2 { name="wcep"; version="1.0.1"; sha256="07x4yq51qsg152mxjavg5nfsim1v5g28py56mrzgwvxvaq3n4pz7"; depends=[coin dplyr progress tidyr]; }; + wcde = derive2 { name="wcde"; version="0.0.6"; sha256="18zvb21wi2ywvf413dnyrmnrrg0vmd5hjy0k9d6z91jcxgkvirp3"; depends=[countrycode dplyr forcats magrittr progress purrr RCurl stringr tibble tidyr]; }; + wcep = derive2 { name="wcep"; version="1.0.2"; sha256="0ydlfd6ngmrccaf9zybyzp11x98kih40kj3i2dq81ixxsgk2pjnq"; depends=[coin dplyr progress tidyr]; }; + wconf = derive2 { name="wconf"; version="1.0.0"; sha256="1a2h8zzkb1lmk29f0i724df6rr4x9azn5bbkg23i8j7qy23vdsmv"; depends=[]; }; wcox = derive2 { name="wcox"; version="1.0"; sha256="13shz5iz2ab9yqp24m6z7ciw70sdg2jdyqifmshq4flp4a737fr7"; depends=[dplyr survival tidyr]; }; wdm = derive2 { name="wdm"; version="0.2.4"; sha256="1lrmscy29ir292vxrgr5b1nprbi1zp3rj65nq963kf9gx829rlg2"; depends=[Rcpp]; }; wdman = derive2 { name="wdman"; version="0.2.6"; sha256="0n0wwb9ip6qc8qzdxn4dsqfbc8b3f607n8l6jigryd7g83ibnbp6"; depends=[assertthat binman processx semver yaml]; }; wdnet = derive2 { name="wdnet"; version="1.2.2"; sha256="163yx18xg6q09n07kbvigklr4y0mdnav76hafsf2i56fz1x5b632"; depends=[CVXR igraph Matrix rARPACK Rcpp RcppArmadillo RcppXPtrUtils wdm]; }; - wdnr_gis = derive2 { name="wdnr.gis"; version="0.1.4"; sha256="071mjqk117xidqva5qp9xqnca91c5i28j4pv5k0ccfcz6mlj9sbm"; depends=[arcpullr dplyr ggplot2 httr jsonlite rlang sf]; }; + wdnr_gis = derive2 { name="wdnr.gis"; version="0.1.5"; sha256="00s1lly2rsgvldchiimxz48nn1gnidff131jj3gixir0bfdkl6fp"; depends=[arcpullr dplyr ggplot2 rlang sf]; }; wdpar = derive2 { name="wdpar"; version="1.3.7"; sha256="0z7p5gcz4fzaga1z5k8q3rnrwzd2iliq0bixsvnqhaddy5aznpms"; depends=[assertthat cli countrycode curl httr lwgeom pingr progress rappdirs sf tibble webdriver withr xml2]; }; weaana = derive2 { name="weaana"; version="0.1.1"; sha256="1wjvn78fkgc28ag1idy7h6sm0rvl57wbqdbxgbl3g5xv844vh8ls"; depends=[dplyr lubridate magrittr reshape2 rlang settings tibble]; }; weakARMA = derive2 { name="weakARMA"; version="1.0.3"; sha256="16dzyw7jiyqv9hd94dff9lxhqv9rwib1xs1km0xfqcy6xa2jhw8w"; depends=[CompQuadForm MASS matrixStats vars]; }; @@ -19665,7 +19957,7 @@ in with self; { webdeveloper = derive2 { name="webdeveloper"; version="1.0.5"; sha256="1nw97df9q0dpzl82pdybw527hc407ch2xg8f0s2z4kf89yp6ckhg"; depends=[future html5 httpuv promises readr stringi]; }; webdriver = derive2 { name="webdriver"; version="1.0.6"; sha256="0k87any9rvv367p2zwy89r3rxszsq3w78pzdq36by4ijn659la2l"; depends=[base64enc callr curl debugme httr jsonlite R6 showimage withr]; }; webexercises = derive2 { name="webexercises"; version="1.1.0"; sha256="1r2wgg89a84q54mrwqv4wcsjvcndiwwjn6rk7qz37pfyciv68hzy"; depends=[jsonlite knitr rmarkdown rstudioapi yaml]; }; - webfakes = derive2 { name="webfakes"; version="1.2.1"; sha256="14gzvj19d1glxdij43zf68rkgbb4lijjz7hb184fbcix09sd2hka"; depends=[]; }; + webfakes = derive2 { name="webfakes"; version="1.3.0"; sha256="1w3ysb5m9pv74wdp75kaa6fzw44pdrij9wiq50mhivvbgh70xsi6"; depends=[]; }; webglobe = derive2 { name="webglobe"; version="1.0.3"; sha256="0gbg4pai4cn7hdc1943aqpx4bn3vgc82zp93a1wl6bmmajv1da4b"; depends=[geojsonio httpuv jsonlite]; }; webmap = derive2 { name="webmap"; version="1.0.3"; sha256="1v6m9d3y9x2vqz7cbm6vknp5006v6vn7h2acjqddwinbjvvadzi9"; depends=[checkmate htmltools htmlwidgets leaflet]; }; webmockr = derive2 { name="webmockr"; version="0.9.0"; sha256="1a590fyzmag1p6c9a82yp93wd1s4jdznk0416i0pv8r5jwarkdv7"; depends=[base64enc crul curl fauxpas jsonlite magrittr R6 urltools]; }; @@ -19679,10 +19971,10 @@ in with self; { websocket = derive2 { name="websocket"; version="1.4.1"; sha256="1ks9cyj39jnb0rkx2ii3ckmpl373m5f8sz0i4q3gk7kkv3js07r8"; depends=[AsioHeaders cpp11 later R6]; }; webtrackR = derive2 { name="webtrackR"; version="0.1.0"; sha256="0ksfrwmbcl6ss1pyj696k1swrdpn6hv6pq4844rrjq2p42cgybnw"; depends=[data_table httr igraph rvest tibble urltools]; }; webuse = derive2 { name="webuse"; version="0.1.3"; sha256="09xvw0v991cq1ck2kfxblp5cngfh9j6swvh5xv420mvky0kshv32"; depends=[haven]; }; - webutils = derive2 { name="webutils"; version="1.1"; sha256="16a6ds0fnb6y8i1r9ba1hf1ydb53am57s070b3hi5jmrs84b9qik"; depends=[curl jsonlite]; }; + webutils = derive2 { name="webutils"; version="1.2.0"; sha256="0g3zrbwiyq9z0chc66dr8gndqs0xdqkc49bpisbb7ns3g0fkl92i"; depends=[curl jsonlite]; }; wec = derive2 { name="wec"; version="0.4-1"; sha256="10lqh43536d44d6082rpp11q1323pmjbmgrgb8v9mrk9c1ysf50w"; depends=[dplyr]; }; weed = derive2 { name="weed"; version="1.1.2"; sha256="1i44v0swnlpgmicjllha3sk64cq55gygsphhi27yszg4jpd0sjqm"; depends=[countrycode dplyr forcats geonames ggplot2 here magrittr purrr readxl sf stringr tibble tidyr tidytext]; }; - wehoop = derive2 { name="wehoop"; version="1.5.0"; sha256="0zlmsjw01ca0q9l7myq0sg6qaknc1i91s8jmf5b7v0crnmivd6rd"; depends=[cli data_table dplyr glue janitor jsonlite magrittr progressr purrr Rcpp RcppParallel rlang rvest stringr tidyr usethis]; }; + wehoop = derive2 { name="wehoop"; version="2.0.0"; sha256="031z2lr1sjnmb8awcd3r8ygj20c0p57sjhim9p7ifv5vkv0044g9"; depends=[cli data_table dplyr glue janitor jsonlite lubridate magrittr progressr purrr Rcpp RcppParallel rlang rvest stringr tidyr usethis]; }; weibullness = derive2 { name="weibullness"; version="1.23.8"; sha256="07iq9kmzj8410pzhp5rq875r67019r3a0kk39rgmf3mc96h0p454"; depends=[]; }; weibulltools = derive2 { name="weibulltools"; version="2.1.0"; sha256="1scdpxvc9sj4jfxnf8xcsnpnp2vn0kl25gn1m2yqa3dw97h64mcl"; depends=[dplyr ggplot2 lifecycle magrittr plotly purrr Rcpp RcppArmadillo sandwich segmented tibble]; }; weightQuant = derive2 { name="weightQuant"; version="1.0.1"; sha256="0v2wxgvv8v5filiabcd19bmcprfv3l8gg79v6s3c5wmnzir617s5"; depends=[doParallel foreach quantreg stringr]; }; @@ -19696,7 +19988,7 @@ in with self; { weirs = derive2 { name="weirs"; version="0.25"; sha256="17a0ppi7ghikrwn39zvhg2cvhmnr3w0qi7r9lj22x65ii9nzadd7"; depends=[]; }; welchADF = derive2 { name="welchADF"; version="0.3.2"; sha256="02a8w1dhc2nd74hml4z3cdlx0d2a9rcx47v341kgav620i8bn88g"; depends=[lme4]; }; welo = derive2 { name="welo"; version="0.1.3"; sha256="1sbrkpajqwnpghcr551gccpksw3lqjwk4n0gjl7j3g4lkm54bf54"; depends=[boot ggplot2 Rdpack reshape2 rio xts]; }; - wesanderson = derive2 { name="wesanderson"; version="0.3.6"; sha256="09mr6p2jmqdjq27cz974w5hyxgn929zp9z3inhxqmmh1582fmdi2"; depends=[]; }; + wesanderson = derive2 { name="wesanderson"; version="0.3.7"; sha256="0kjyz5mrkrirg2glf57b0rhxj2fdp1m6q8zx947y0jg1w425cbn9"; depends=[]; }; wevid = derive2 { name="wevid"; version="0.6.2"; sha256="1ranmqhgfkrky7r4qk563n9nlz2syn3vj85lmfajq01csadzjdpl"; depends=[ggplot2 mclust pROC reshape2 zoo]; }; weyl = derive2 { name="weyl"; version="0.0-4"; sha256="1i6kzadw37l2bj8n6z2c9j7h7jk2gjhx7lizwlgpjn8sycm2rkqr"; depends=[disordR freealg mathjaxr spray]; }; wfe = derive2 { name="wfe"; version="1.9.1"; sha256="0lcg7hzdll1wqdwydkk96m4n715h8sjn3qwhabm245m0hqhdf7is"; depends=[arm MASS Matrix]; }; @@ -19708,11 +20000,12 @@ in with self; { whSample = derive2 { name="whSample"; version="0.9.6.2"; sha256="1dkw155xk36r9vmkqxlg2vw45nbpypivd8q5v3i5995biyib4l2k"; depends=[bit64 data_table dplyr magrittr openxlsx purrr]; }; whatthreewords = derive2 { name="whatthreewords"; version="0.1.3"; sha256="1shr4d1q2vallz251s6h0m2ncbx7lh0i194pm416q32ha0cz8ska"; depends=[dplyr httr2]; }; wheatmap = derive2 { name="wheatmap"; version="0.2.0"; sha256="064idlrnb85xxav39gp3n854fic6514khvazrf5d0x48crpzyvdp"; depends=[colorspace RColorBrewer]; }; + when = derive2 { name="when"; version="1.0.0"; sha256="16xzhwvhd3zdklyvdb1lla5lykbvkq5hghfm9yz0cc6ykcnz7afr"; depends=[DBI dm dplyr hms lubridate rlang snakecase tibble xlsx]; }; whereami = derive2 { name="whereami"; version="0.2.0"; sha256="0vg1vcs0b660zm08rwd6kg7vs8956pgdkjlba0z9f5ff9z69j1rr"; depends=[cli jsonlite rstudioapi]; }; whereport = derive2 { name="whereport"; version="0.1"; sha256="1gdqzr2hrnpxbwl7cfps4m3xja8wkgwfs50i2nailybympvdnxm4"; depends=[dplyr]; }; whippr = derive2 { name="whippr"; version="0.1.2"; sha256="16xmbsjzzdf2s19ix655jqpy8v98c39lkllh390zsv9xb12rgryr"; depends=[broom cli dplyr ggplot2 glue lubridate magrittr minpack_lm nlstools patchwork pillar purrr readxl rlang stringr tibble tidyr usethis zoo]; }; whisker = derive2 { name="whisker"; version="0.4.1"; sha256="1g7jy6dnc5igs7yqy1n7cmy0ia8dm2yi3qj1mil2y0q88m4m2ldz"; depends=[]; }; - whitebox = derive2 { name="whitebox"; version="2.3.1"; sha256="0bb6apb7yw625gw437n567l0w42l21s5819dria07v3apv4wsbjx"; depends=[]; }; + whitebox = derive2 { name="whitebox"; version="2.3.4"; sha256="044r2aczhr7l83xx00zwzlhr7mlqs9pwl6ix93j8ch19j2dcrsg5"; depends=[]; }; whitechapelR = derive2 { name="whitechapelR"; version="0.3.0"; sha256="0mnq5m59mw8w5g1p0h2xzlz738j397b3444km59bm5yln3j0nsbi"; depends=[igraph plyr]; }; whitening = derive2 { name="whitening"; version="1.4.0"; sha256="1gc5pf4b9s8w4jh1wygyb9a9w6hi4zfd7ivlwshhzrmb43x5srsp"; depends=[corpcor]; }; whitestrap = derive2 { name="whitestrap"; version="0.0.1"; sha256="1jcnxqxvkhyz9j6jay5834ncv5fxb9qiyyyj3b8al75mqknmn8ra"; depends=[]; }; @@ -19730,13 +20023,12 @@ in with self; { wikibooks = derive2 { name="wikibooks"; version="0.2.1"; sha256="1ws6spwxxcnjrzcngbr6n4hqy1di7s2h8iz6a62gyw84kpl542bw"; depends=[]; }; wikifacts = derive2 { name="wikifacts"; version="0.4.2"; sha256="1fw1chha6mcrmv1f9rjg01g84bgzkgf1h76l926brjs5gsn4i414"; depends=[magrittr rvest xml2]; }; wikilake = derive2 { name="wikilake"; version="0.7.0"; sha256="0niym9azy4qzcr4rriw0bfd97scx1mdpx67szinj7qsh569xb61m"; depends=[dplyr maps rvest selectr sp stringi stringr tidyr units WikipediR xml2]; }; - wikipediatrend = derive2 { name="wikipediatrend"; version="2.1.6"; sha256="11ng7qsb4954mgsz55ix86z0ynh4xgflcp6dzl0y4zi6zdrj87i7"; depends=[ggplot2 glue hellno httr pageviews rvest stringr xml2]; }; wikiprofiler = derive2 { name="wikiprofiler"; version="0.1.3"; sha256="1az2phwgy8aqbl9sxvsq1madrdlrw7zshq9fhw5q580xx0lfhkmk"; depends=[ggplot2 ggplotify gson rsvg yulab_utils]; }; wikitaxa = derive2 { name="wikitaxa"; version="0.4.0"; sha256="1z7p7dwgl8x4ambwss5dqlp4zgz52mgj0vhx2bqwizarmx9ji1xs"; depends=[crul curl data_table jsonlite tibble WikidataR xml2]; }; wikkitidy = derive2 { name="wikkitidy"; version="0.1.11"; sha256="150zhpdwfvmai9nczmb64vkwcxg1sja84by4nxk2kwb4cv66dxpn"; depends=[cli dplyr glue httr2 lubridate magrittr openssl pillar purrr rlang stringr tibble tidyr vctrs]; }; wilcoxmed = derive2 { name="wilcoxmed"; version="0.0.1"; sha256="0wnwxgm5g4fxdkrb6h124ngaw0s88yr2s8iqshb77vzj12kvb9m1"; depends=[]; }; wildcard = derive2 { name="wildcard"; version="1.1.0"; sha256="0qkzab84z95g5f4fv3v4wisccgd7k9m3210pz4nvm1x8rfaqfjf1"; depends=[magrittr stringi]; }; - wildlifeDI = derive2 { name="wildlifeDI"; version="0.5.0"; sha256="0rpbrnclj07pdcsrkc2bin52msh1k2a38454227jk6wfb372gprg"; depends=[adehabitatLT dplyr sf sp]; }; + wildlifeDI = derive2 { name="wildlifeDI"; version="0.5.1"; sha256="0z2zw3q4kapfw7h998mc33l3210f6b7jr3fzcmvw6dc9lkzl49wj"; depends=[adehabitatLT dplyr sf sp]; }; wildmeta = derive2 { name="wildmeta"; version="0.3.2"; sha256="1ixrajbxmlsr8xniagywlfd8knik7c93phvsdbpas0k8ai7wfv9r"; depends=[clubSandwich metafor robumeta sandwich]; }; wildpoker = derive2 { name="wildpoker"; version="1.1"; sha256="1302ain55spz34irmq49sp9b1pvrn2nxmzmqs8m9wdk6g82h3s27"; depends=[]; }; wildrwolf = derive2 { name="wildrwolf"; version="0.6.1"; sha256="1cl3rv8v3y8y86cl6y5da63qkzha37f20naaqrypk65rn47savig"; depends=[dreamerr fabricatr fixest fwildclusterboot MASS]; }; @@ -19744,14 +20036,14 @@ in with self; { wilson = derive2 { name="wilson"; version="2.4.2"; sha256="050hi6rigs024is1ry0yymqapgqfhzpp0ghk5ya028k71k22lksx"; depends=[circlize colourpicker ComplexHeatmap data_table DESeq2 DT factoextra FactoMineR ggplot2 ggrepel gplots heatmaply log4r openssl plotly plyr R6 RColorBrewer reshape rintrojs rje rjson RJSONIO scales shiny shinycssloaders shinydashboard shinyjs shinyWidgets viridis zip]; }; winch = derive2 { name="winch"; version="0.1.0"; sha256="0v2kyfr5rm4nbh99ii17qh08i88yv0phyf3d59dxfhq1q8wrl6xb"; depends=[lifecycle procmaps]; }; windAC = derive2 { name="windAC"; version="1.2.10"; sha256="077kl7j1db0g2pnr7gc91x2anbw80y5sbl4gy49rzclbhhnwjlrs"; depends=[mvtnorm sf]; }; - windex = derive2 { name="windex"; version="2.0.6"; sha256="1qpvq9ikv5jvd3qplhlw4404gggrkimcshxb6k0jp7mjz20b1iah"; depends=[ape geiger phangorn phytools scatterplot3d]; }; + windex = derive2 { name="windex"; version="2.0.7"; sha256="0dhan3wqfr5997kmpl6visijij15a53swc9dcv90ymd5l7minvdr"; depends=[ape geiger phangorn phytools scatterplot3d]; }; windows_pls = derive2 { name="windows.pls"; version="0.1.0"; sha256="1n8az7zsbj2xlgkws7rfnk4ihnj1lchsjvglm7qnkrmjchj8asmn"; depends=[dplyr ggplot2 mdatools readr stringr tidyr tidyverse]; }; windsoraiR = derive2 { name="windsoraiR"; version="0.1.2"; sha256="1smd3zw5ra1fba6mds3diadcmbw59jlvmrvfzzi4fss91wv50jql"; depends=[jsonlite]; }; winfapReader = derive2 { name="winfapReader"; version="0.1-5"; sha256="01hc0kcm7qfzk47rci6lfmrqs4zfj8z7abqydgi2ckq8n1k2pd0h"; depends=[lubridate]; }; wiqid = derive2 { name="wiqid"; version="0.3.3"; sha256="1d5bckkr6cnixccxaa14n7vbsya5cc00y9mryy1j69shhsmxp5ks"; depends=[coda HDInterval MASS mcmcOutput plotrix truncnorm]; }; withdots = derive2 { name="withdots"; version="0.1.1"; sha256="0vpbw9swyi8qf5s2nlml9pdmrzvwn4rpm4gbfsc0vikbzp29dmvi"; depends=[]; }; - withr = derive2 { name="withr"; version="2.5.1"; sha256="1kndhxl0fxn40v9yx0iglilani3ym3ywbjf6zbg1pnb52ncf0nm9"; depends=[]; }; - wk = derive2 { name="wk"; version="0.9.0"; sha256="1nmrgdp3swl34kr51hypm3azf8yhcalg5nngp70l56afsbaskyqh"; depends=[]; }; + withr = derive2 { name="withr"; version="2.5.2"; sha256="01a27nqlrrf1pws57hi9631f3aj33a9dashd640m5nlgf9nzmdnm"; depends=[]; }; + wk = derive2 { name="wk"; version="0.9.1"; sha256="0yxzyb09by9winspdn0585xhjmdcablb07wx6pf7ahg0q18sz85p"; depends=[]; }; wkb = derive2 { name="wkb"; version="0.4-0"; sha256="0mah538345npkb06bcj18mb6qnnx8nn7bdqmvqqpbawallh546a9"; depends=[sp]; }; wktmo = derive2 { name="wktmo"; version="1.0.5"; sha256="05pjyk0xsdazbi1x7xfmg097ybybd60zmzzm7sch1ikp05hzn0wb"; depends=[]; }; wkutils = derive2 { name="wkutils"; version="0.1.3"; sha256="01gsvyzxd89j979zdm8q159wgkha277xwsn097ja5absxlny6991"; depends=[Rcpp tibble vctrs wk]; }; @@ -19765,11 +20057,11 @@ in with self; { womblR = derive2 { name="womblR"; version="1.0.5"; sha256="0acvv7jylissacvln51pi14a8i9y02q5whrz3sx5dsnvsk00slzm"; depends=[msm mvtnorm Rcpp RcppArmadillo]; }; woodValuationDE = derive2 { name="woodValuationDE"; version="1.0.1"; sha256="1sbyl4yd766lhjqghm4hq9162wz0qabiwiwnsiwzdn4fbfihxl7v"; depends=[dplyr]; }; wooldridge = derive2 { name="wooldridge"; version="1.4-3"; sha256="16lgdzbjp4yjhihbhz9kpagsdral802lhgg6m94vxprlz2sna1r4"; depends=[]; }; - worcs = derive2 { name="worcs"; version="0.1.13"; sha256="12qb32vcbc18acj19m5dsrwrb645ca42v9jfsqb8hrr4lzml3hdi"; depends=[credentials digest gert gh prereg ranger renv rmarkdown rticles tinytex usethis yaml]; }; + worcs = derive2 { name="worcs"; version="0.1.14"; sha256="1l18xf9lhp1ba36an46ii3gdcaf01xm6c2v70cswsyf05x61kzsy"; depends=[credentials digest gert gh prereg ranger renv rmarkdown rticles tinytex usethis xfun yaml]; }; word_alignment = derive2 { name="word.alignment"; version="1.1"; sha256="0inlq96j4zkjncz2v66amz91l5y3b5lx49qi2jg6jbqdldw7aa02"; depends=[data_table openxlsx]; }; word2vec = derive2 { name="word2vec"; version="0.4.0"; sha256="14ba0cj430d02bd6fay3nl4ldwqyj77iwjm4gzgdc0f6sx597iiq"; depends=[Rcpp RcppProgress]; }; wordPuzzleR = derive2 { name="wordPuzzleR"; version="0.1.0"; sha256="147038i7rr1nr0ippvm7q7brjk9jvyv5pgafsqm3s4hcy1dgh43w"; depends=[purrr scales stringr]; }; - wordbankr = derive2 { name="wordbankr"; version="1.0.1"; sha256="042y7zmy7x8kw9baxi131s5jilq6qdwa1s29r2mrklbadk8qgzf7"; depends=[assertthat DBI dbplyr dplyr glue jsonlite lifecycle purrr quantregGrowth rlang RMySQL robustbase stringr tidyr]; }; + wordbankr = derive2 { name="wordbankr"; version="1.0.2"; sha256="151n0jc4v9g41dvlnxfspjq3r8wjfah65gx6wjrzp1q60xcwdmp9"; depends=[assertthat DBI dbplyr dplyr glue jsonlite lifecycle purrr quantregGrowth rlang RMySQL robustbase stringr tidyr]; }; wordcloud = derive2 { name="wordcloud"; version="2.6"; sha256="0j96yyvm6bcrrpbdx4w26piqx44a0vbsr3px9cb4zk8a8da6jwak"; depends=[RColorBrewer Rcpp]; }; wordcloud2 = derive2 { name="wordcloud2"; version="0.2.1"; sha256="1a2q42bn65q4idxq0vxysyam16q6c18inxv4dqhfy0x52j8z9x6k"; depends=[base64enc htmlwidgets]; }; wordler = derive2 { name="wordler"; version="0.3.1"; sha256="0pvnijh2gvwjbd86ivky0zbi8y1x40xazsv2bdy5s2rfsscf4l88"; depends=[crayon]; }; @@ -19804,7 +20096,7 @@ in with self; { wqspt = derive2 { name="wqspt"; version="1.0.1"; sha256="1xd588kw171djx7q21b2jjarhbzd4i0gx7ccv1j1wyl95yzq07ba"; depends=[cowplot extraDistr ggplot2 gWQS mvtnorm pbapply rlang viridis]; }; wqtrends = derive2 { name="wqtrends"; version="1.4.1"; sha256="0zj9p24s4dwvyryzfgcjhfrp5dw4wyy6zzcsrhiqvbbjx9y631my"; depends=[dplyr ggplot2 lubridate mgcv mixmeta plotly purrr tibble tidyr viridisLite]; }; wrGraph = derive2 { name="wrGraph"; version="1.3.6"; sha256="0ssqwxlhy92646d311ay014czzxsjj1170crlpyx3q9c9qyds9s5"; depends=[lattice RColorBrewer wrMisc]; }; - wrMisc = derive2 { name="wrMisc"; version="1.13.0"; sha256="19plk0yw2djnb08vsia9xh1vhssqbkcgs9m9bn1lsns08nn6cimz"; depends=[MASS]; }; + wrMisc = derive2 { name="wrMisc"; version="1.14.0"; sha256="05b5983xg2lxkx20ngywvyxcflsl4nxsjqrk6nm296qjjymzia05"; depends=[MASS]; }; wrProteo = derive2 { name="wrProteo"; version="1.10.1"; sha256="0dx3ylmkysa5cy6525g7p5x99rq13cdsc7dbfxwzfhi080qg65r5"; depends=[knitr limma wrMisc]; }; wrTopDownFrag = derive2 { name="wrTopDownFrag"; version="1.0.2"; sha256="1rdg6rzjz2h514i3c8z89mvj2j3h1s7rr5fry2mq3xvrwrgd3738"; depends=[wrMisc wrProteo]; }; wrangle = derive2 { name="wrangle"; version="0.6.3"; sha256="11bryvsggjphcrz7a92xanx9wcnaxmgm503ns9yq3nxfpyvxfgvf"; depends=[dplyr magrittr rlang tidyr]; }; @@ -19824,7 +20116,7 @@ in with self; { wsyn = derive2 { name="wsyn"; version="1.0.4"; sha256="0wq07n69l52rs0ddl1r3ml5jh5nflsg9mddvc3dxjdpd00mgbxnl"; depends=[fields MASS]; }; wtest = derive2 { name="wtest"; version="3.2"; sha256="063ax9mbb2dy33l1cl533mjzpvhf2akw3613pklfjg6bhprlniz7"; depends=[]; }; wv = derive2 { name="wv"; version="0.1.2"; sha256="0dx33bs05k6zi6rnk12v6z2l2pvvx2jdl99vafbpyydf0ls4ppbk"; depends=[coda Rcpp RcppArmadillo simts]; }; - wwntests = derive2 { name="wwntests"; version="1.0.2"; sha256="0lp5xipf1lq8mlpdamsvan82s3fr3g5xbxpdnqjc68abnify0r8s"; depends=[ftsa MASS rainbow sde]; }; + wwntests = derive2 { name="wwntests"; version="1.1.0"; sha256="0bs0i66ydy5zg66nwhniqzd000rc5qcmkliqpb3f9n749x2sj2f6"; depends=[fda ftsa MASS rainbow sde]; }; wxgenR = derive2 { name="wxgenR"; version="1.3.6"; sha256="1q9rfkb2iv0h1pcra0jg3s8xp57fhxfyn000sgf5gf67k62ia32x"; depends=[doParallel dplyr foreach lubridate magrittr msm plyr sm]; }; wyz_code_metaTesting = derive2 { name="wyz.code.metaTesting"; version="1.1.22"; sha256="0xhcqqvh0lkw9mqdrib0q1inwgla5y9ayjc6pdkix6ckabfybagg"; depends=[crayon data_table tidyr wyz_code_offensiveProgramming]; }; wyz_code_offensiveProgramming = derive2 { name="wyz.code.offensiveProgramming"; version="1.1.24"; sha256="1q3yn5yp2qlzqg1xpxlkpdkiij4kzwn9yj8mc9xxx4bxnbspkakq"; depends=[crayon data_table R6 stringr tidyr]; }; @@ -19834,7 +20126,7 @@ in with self; { x12 = derive2 { name="x12"; version="1.10.3"; sha256="0f0bbnnv4wbrx6c90rg8s284mh8i3mfcfpbwscv0xviaa7fvlsm6"; depends=[stringr x13binary]; }; x13binary = derive2 { name="x13binary"; version="1.1.57-4"; sha256="00g94lxj3a4kzsfir7c7dqi9p3gxb4rc45aa0h712l19c286pmqd"; depends=[]; }; x3ptools = derive2 { name="x3ptools"; version="0.0.3"; sha256="04j40nkwlsaga6kp60rf1grk76dw2i1sqivfm2sj017n0v6mj017"; depends=[assertthat digest dplyr MASS png pracma readr rgl xml2 zoo]; }; - xLLiM = derive2 { name="xLLiM"; version="2.2.1"; sha256="0wamfc7r6b4wgr386yf9q5ci3r1dnym41qw23rs1rdxjc4lbl3rx"; depends=[abind capushe corpcor e1071 glmnet igraph MASS Matrix mda progress randomForest]; }; + xLLiM = derive2 { name="xLLiM"; version="2.3"; sha256="08v6acn6vpn8asn61ldqdryjz0xk5zyd2v63aqrc5xximpqwrp7d"; depends=[abind capushe corpcor e1071 glmnet igraph MASS Matrix mda mixOmics progress randomForest]; }; xQTLbiolinks = derive2 { name="xQTLbiolinks"; version="1.6.2"; sha256="0hi3admcpraq25d7n1fjbz9pv3gj7pj6wcr5694qa2xqizp7vmv2"; depends=[BiocGenerics cowplot curl data_table DBI GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel IRanges jsonlite RMySQL stringr SummarizedExperiment viridis]; }; xRing = derive2 { name="xRing"; version="0.1.1"; sha256="1k4yhqvmixnjvzbw1ymq4brwn9n71vqsqpqw33p79kn98n4fj7z0"; depends=[dplR imager tcltk2 tkRplotR]; }; xSub = derive2 { name="xSub"; version="3.0.2"; sha256="07mib63zbvffr4w8klpv017d13wvqy3mwrpssr0vydcj8475gjfx"; depends=[countrycode haven RCurl]; }; @@ -19847,9 +20139,9 @@ in with self; { xefun = derive2 { name="xefun"; version="0.1.5"; sha256="0rzd9xi5hxxbydzg67h17zb1q9qmw1y9790vy04k6kj444apxc2j"; depends=[data_table]; }; xergm_common = derive2 { name="xergm.common"; version="1.7.8"; sha256="03mjpafwfkmyj5ba84jydap9rp0i602izjlbd511xbxcw6dx2k0b"; depends=[ergm network]; }; xesreadR = derive2 { name="xesreadR"; version="0.2.3"; sha256="1pvdx0mxg2f885bhy4hb3kqzcgva4q7hzzaipkfzyi5lnjdsbc81"; depends=[bupaR data_table dplyr lubridate purrr stringr tidyr XML xml2]; }; - xfun = derive2 { name="xfun"; version="0.40"; sha256="1xvngh0kbd87cl39bzmjx5i57pmxik9gw50li8dh42j438cnma8y"; depends=[]; }; + xfun = derive2 { name="xfun"; version="0.41"; sha256="00ivgr557ja8l33lvawrivfhgj1xbjmdi4dj07zybwa1y6wc6x13"; depends=[]; }; xgb2sql = derive2 { name="xgb2sql"; version="0.1.2"; sha256="1gw5dw0ck5hip8mv347zaswrggk395bg2hgn02bvqs0d31jhmgvi"; depends=[data_table xgboost]; }; - xgboost = derive2 { name="xgboost"; version="1.7.5.1"; sha256="1g35r6qh4ivgbbvsdysiyy4c9gh396k3wdwz7scfb13g40zq7h2f"; depends=[data_table jsonlite Matrix]; }; + xgboost = derive2 { name="xgboost"; version="1.7.6.1"; sha256="0q1x7ldvjankaf0gqcqiyiy514c5jascggfq6qrfyn3sravdcggj"; depends=[data_table jsonlite Matrix]; }; xgrove = derive2 { name="xgrove"; version="0.1-7"; sha256="0sfnylzpgqsg7jvcy9yjywj13zl6np59qiciw0yr8fm4d91sxwnh"; depends=[dplyr gbm rpart rpart_plot]; }; xgxr = derive2 { name="xgxr"; version="1.1.2"; sha256="0mmnh6zab7qllbfpl3vn5sd7hcznm83v5rxi1pw5zv96ax0ikagv"; depends=[assertthat binom Deriv DescTools dplyr ggplot2 glue gtable Hmisc labeling magrittr minpack_lm pander png RCurl readr scales stringr tibble]; }; xhaz = derive2 { name="xhaz"; version="2.0.1"; sha256="1kipqscniyb4s7p29pdkg8hg95wb78jpnax8qh058vzrk5vqz181"; depends=[gtools numDeriv optimParallel statmod stringr survexp_fr survival]; }; @@ -19861,7 +20153,7 @@ in with self; { xlsx2dfs = derive2 { name="xlsx2dfs"; version="0.1.0"; sha256="0bdawr80grks91sy221d33fsk75g20zh3wjg6gvd0zj0m1zvvwvd"; depends=[openxlsx]; }; xlsxjars = derive2 { name="xlsxjars"; version="0.6.1"; sha256="1rka5smm7yqnhhlblpihhciydfap4i6kjaa4a7isdg7qjmzm3h9p"; depends=[rJava]; }; xmeta = derive2 { name="xmeta"; version="1.3.2"; sha256="1by3w7mn3kk4942pbjyqb6hbrsxbxywfjy96cq0cmvwzq7aamhxm"; depends=[aod glmmML MASS metafor mvmeta numDeriv plotrix]; }; - xml2 = derive2 { name="xml2"; version="1.3.5"; sha256="10p214gzzcy2zzcq2xkh1vz2wrjsys5gplvk9c1crq3nmfki0six"; depends=[]; }; + xml2 = derive2 { name="xml2"; version="1.3.6"; sha256="13rhvmrjdqwc5psn501vz9jfmqwlf4rc30w6vrnn3wxzk7zr26g8"; depends=[cli rlang]; }; xml2relational = derive2 { name="xml2relational"; version="0.1.1"; sha256="05nykrmwqa43f9h6wpk6m1spmqr22r0ffiki4hp3jsyw8k7i78hv"; depends=[fs lubridate rlang stringr tidyr xml2]; }; xmlconvert = derive2 { name="xmlconvert"; version="0.1.2"; sha256="0vj5ar61i94if141jzqk7jq091mb2xwzl0x86dj7ddk8y3c1w9dv"; depends=[httr lubridate readr stringr tibble xml2]; }; xmlparsedata = derive2 { name="xmlparsedata"; version="1.0.5"; sha256="1c6bnz3ng1qw7sfip8wq3a4dn36a4d6rbja0sadn0a4pbsmk8q3n"; depends=[]; }; @@ -19888,16 +20180,17 @@ in with self; { xtal = derive2 { name="xtal"; version="1.15"; sha256="1zq3vd5x3vw6acn47yd2x7kflr9sm3znmdkm68cs64ha54jbl3vs"; depends=[]; }; xtranat = derive2 { name="xtranat"; version="0.1.0"; sha256="1gv0kc1gj305iwwhv7wrfrh45rqwaks696q6q39a55m2vxw11xl1"; depends=[]; }; xts = derive2 { name="xts"; version="0.13.1"; sha256="0pc23na5lrzfchd4i22p035y1krjpddi0iw6i78lhbhns330ff9c"; depends=[zoo]; }; + xtsum = derive2 { name="xtsum"; version="0.1.0"; sha256="0vq3rm0rwmqyilq7056swlwg2vqq2rpmqsx5apg0imkjq1p26vcb"; depends=[dplyr kableExtra knitr magrittr plm rlang sampleSelection]; }; xtune = derive2 { name="xtune"; version="2.0.0"; sha256="0k5cf7n84j73cdxzfr7ijjxc65h6lx6fjry81rsxa80fn0sn8qiz"; depends=[crayon glmnet lbfgs selectiveInference]; }; xutils = derive2 { name="xutils"; version="0.0.2"; sha256="1h07gs8pj7hn64r35ld1j1zakc243aiiwdrz92viqrg7z75czdzl"; depends=[Rcpp]; }; xwf = derive2 { name="xwf"; version="0.2-3"; sha256="1byj6vjk2abm9j919107xsa3nd40zbsvxaldvv4ml3c47k1fg3kc"; depends=[mgcv]; }; xxIRT = derive2 { name="xxIRT"; version="2.1.2"; sha256="0b8yv8ixmcjiv9hlvpfdknx815smy7df7f2ixifnvhxxafgf1fwq"; depends=[ggplot2 glpkAPI lpSolveAPI reshape2]; }; yaConsensus = derive2 { name="yaConsensus"; version="1.0"; sha256="1srph1yc8lr00yvx6sjm0br9h2cq94xqb9yjxfb0bqvvmskp6s2s"; depends=[doParallel foreach pheatmap]; }; - yaImpute = derive2 { name="yaImpute"; version="1.0-33"; sha256="0b2i0aymwb150068ji27i574p8lf8566cy6amppgzj8vxdi54naq"; depends=[]; }; + yaImpute = derive2 { name="yaImpute"; version="1.0-34"; sha256="0wwaibplh4p8lwz5ck63jrdg9jaxr1w9q8xwpf048y6abz4rij5l"; depends=[]; }; yacca = derive2 { name="yacca"; version="1.4-2"; sha256="197iv7qcbp9xx8kmpwb98acpkgzn9m7sncn6qi7k0chjx78095ws"; depends=[]; }; yager = derive2 { name="yager"; version="0.1.1"; sha256="178ypdr3f0w9rb4ci8q2hshr62b7993m8q6zxc4pf0msq175n1ml"; depends=[lhs MLmetrics randtoolbox]; }; yahoofinancer = derive2 { name="yahoofinancer"; version="0.2.0"; sha256="1wmxz2xmy39167kx9lfps9wq1ci9hqzpzc5xymnlrazbdviw1isy"; depends=[curl httr jsonlite lubridate magrittr purrr R6 stringr]; }; - yaml = derive2 { name="yaml"; version="2.3.7"; sha256="1aw0cvaqw8a0d1r3cplj5kiabkcyz8fghcpi0ax8mi7rw0cv436j"; depends=[]; }; + yaml = derive2 { name="yaml"; version="2.3.8"; sha256="1n1zlbnq3ldipnnm08whpvm8r21vxg4c9jzg7x7j3blw2pi7kl4y"; depends=[]; }; yamlet = derive2 { name="yamlet"; version="0.10.33"; sha256="1ynb7p5n8piinill37gxg83p2k6qijj32vnyz6fx5ddfp8958rb5"; depends=[csv dplyr encode ggplot2 pillar rlang scales spork tidyr units vctrs xtable yaml]; }; yamlme = derive2 { name="yamlme"; version="0.1.2"; sha256="1019nzchqif4r3c7ywq23bjx711g359q44s8jy0rxyv03rij6xh9"; depends=[rmarkdown yaml]; }; yardstick = derive2 { name="yardstick"; version="1.2.0"; sha256="0aqxnxhyy0bdfm09b7jpzba6c4g5r6l4h48q2xfxsm353nni7wgb"; depends=[cli dplyr generics hardhat lifecycle rlang tibble tidyselect vctrs]; }; @@ -19913,27 +20206,27 @@ in with self; { yll = derive2 { name="yll"; version="1.0.0"; sha256="0lf3cd6pfzki29nk2iy0vd6v4dw6zlsbrjh2839zq5vlpiimsvck"; depends=[]; }; ymd = derive2 { name="ymd"; version="0.1.0"; sha256="18ivf09r7df4jq60pm0gdagcvpb4pz9a19y7dfb096h1yk7rqfa4"; depends=[]; }; ymlthis = derive2 { name="ymlthis"; version="0.1.7"; sha256="127rh8mfff0ii6wcd7iaaz60vlkynjlrs188wwcap8l2qgv67idy"; depends=[crayon fs glue magrittr purrr rlang rmarkdown rstudioapi stringr usethis whoami withr yaml]; }; - ympes = derive2 { name="ympes"; version="0.4.0"; sha256="1vxyq148m7kaj9f4lgr5jlnd31rn1wh8cbjn0j2s22kip1p57aaf"; depends=[]; }; + ympes = derive2 { name="ympes"; version="0.5.0"; sha256="1z7hbv8sl8sdkczrfqjxdalxcpgfhpb2cx4bpmjh7y98a5xn2g6s"; depends=[]; }; yorkr = derive2 { name="yorkr"; version="0.0.41"; sha256="0ypm7di343wpsg7x85bx4044bhf2fxp638yyy0rvj23x11z0ra8v"; depends=[dplyr ggplot2 gridExtra reshape2 rpart_plot yaml]; }; youngSwimmers = derive2 { name="youngSwimmers"; version="0.0.1"; sha256="02ih66ad8v5qkgyszllkh9319sfd6fqcci4zrvbjr1dfwlwa2ri1"; depends=[data_table lifecycle]; }; ypr = derive2 { name="ypr"; version="0.6.0"; sha256="0hn4zbg270p8yg4wxcszwfc0vsf2mb21lkqi1745000rh5cbz8sa"; depends=[chk ggplot2 lifecycle purrr tibble tidyplus yesno]; }; ypssc = derive2 { name="ypssc"; version="1.1.0"; sha256="0fpph19amj1cafcbh5k6s75pi7nahzgfvnsbs9i5644gv43iavbj"; depends=[dplyr eulerr Peptides readxl spelling stringr svDialogs]; }; yuima = derive2 { name="yuima"; version="1.15.22"; sha256="04qhb8w0f5ix4f99lsfcnfkx0xpwn12rfdvkg1fk484n0l7gli0r"; depends=[boot calculus coda cubature expm glassoFast mvtnorm Rcpp RcppArmadillo zoo]; }; yuimaGUI = derive2 { name="yuimaGUI"; version="1.3.1"; sha256="1sl45kmqqq7hg3lkpn3cy70f409fwsgg76gjldx1l4cvmyzyf9hl"; depends=[DT ggplot2 ghyp plotly quantmod sde shiny shinyBS shinydashboard shinyjs yuima]; }; - yulab_utils = derive2 { name="yulab.utils"; version="0.1.0"; sha256="045s3xg723a8m9cqql74ifqir5k6zl4csdq39vw5im2zgvyajkzg"; depends=[cli digest fs memoise rlang]; }; + yulab_utils = derive2 { name="yulab.utils"; version="0.1.3"; sha256="0yh29d28i67z3wyif72lr35ki92rqv6rljdjwj28559f7n864yjv"; depends=[cli digest fs memoise rlang]; }; yum = derive2 { name="yum"; version="0.1.0"; sha256="1k9q34n1pzv4c7hp7cd4yhm8v1qv41an8vfh65n4byvyzipxp85y"; depends=[yaml]; }; - zCompositions = derive2 { name="zCompositions"; version="1.4.1"; sha256="1l9hj37x54b4vzbcg2051nfli5rh65llm27hygc2vx7yyi6q75ma"; depends=[MASS NADA truncnorm]; }; + zCompositions = derive2 { name="zCompositions"; version="1.5.0-1"; sha256="0sx6i03iyg4jxmjiyzkssz3i6c8nv29wwhbl7yd0wxapwpakmlj8"; depends=[MASS NADA truncnorm]; }; zTree = derive2 { name="zTree"; version="1.0.7"; sha256="005zk6wpchpss6865ki35yawgf668pn70163ah97rnfkhfaswm6y"; depends=[plyr]; }; zalpha = derive2 { name="zalpha"; version="0.3.0"; sha256="04hi5lxgcqzmkbqppp5fv8x7wdgap3bgr8b8pv4pvavzh73jlmxs"; depends=[]; }; zctaCrosswalk = derive2 { name="zctaCrosswalk"; version="2.0.0"; sha256="14yda45nqn9ywb7zpwp4kmjziglj0qjgm02lmi8ndvc5wi2r1ma7"; depends=[dplyr readr rlang stringr]; }; - zcurve = derive2 { name="zcurve"; version="2.3.0"; sha256="1bgc2inc5wmimbhmxqlyg02hcf3n06z2fx26dnqr9baabmdgkpfa"; depends=[evmix nleqslv Rcpp Rdpack]; }; + zcurve = derive2 { name="zcurve"; version="2.4.0"; sha256="0cc5prmslj9nffs0bl7xg6fdy7qc1qc12p6kpzfi23w3x1m62dx1"; depends=[evmix ggplot2 nleqslv Rcpp Rdpack rlang]; }; zdeskR = derive2 { name="zdeskR"; version="0.3.0"; sha256="0a22yhsvzc0z4xbj7cfy33gf73zi1a8ryp0x4na3kximwiiw6v09"; depends=[dplyr httr jsonlite magrittr plyr purrr tidyr]; }; zeallot = derive2 { name="zeallot"; version="0.1.0"; sha256="1sd1igcfnv27pa3bqxlbyxchi562h7grnjg1l7wxx3bwr49i57s3"; depends=[]; }; zebu = derive2 { name="zebu"; version="0.2.2.0"; sha256="1bxzc110nxyssdvnk330qs8qbmf6m7v5gglcfdkxdzy5gcbs1bm6"; depends=[data_table ggplot2 Rcpp reshape2]; }; zeitgebr = derive2 { name="zeitgebr"; version="0.3.5"; sha256="1h2zx3ah1xdyyag40ragrv7gvpnlzqmappbnjp971dn9khqdxfqs"; depends=[behavr data_table lomb pracma WaveletComp]; }; zen4R = derive2 { name="zen4R"; version="0.9"; sha256="09r3kd5mvaps30k4vszbfbhfb8hp6jq4f1v3kr9b8wgv7vqsa2k4"; depends=[atom4R httr jsonlite keyring R6 utf8 XML xml2]; }; zendeskR = derive2 { name="zendeskR"; version="0.4"; sha256="06cjwk08w3x6dx717123psinid5bx6c563jnfn890373jw6xnfrk"; depends=[RCurl rjson]; }; - zenplots = derive2 { name="zenplots"; version="1.0.5"; sha256="1zhxjql49hbwrim9y8qyyrkqwq09dv84vbini18xjkfv0z0lfmd2"; depends=[graph loon MASS PairViz]; }; + zenplots = derive2 { name="zenplots"; version="1.0.6"; sha256="0rf690qip2x7w037cbq51cfzqmla398a6x857wpz8cy9fd26ns7p"; depends=[graph MASS PairViz]; }; zeroEQpart = derive2 { name="zeroEQpart"; version="0.1.0"; sha256="1n24nqyl0irpyspwx4b73xy228a84aa8zsn9fcf2lrlni5vyzmm0"; depends=[MASS ppcor]; }; zerotradeflow = derive2 { name="zerotradeflow"; version="0.1.0"; sha256="03fvhk3yd6grqs0d6m3j537xzy0n9s64947g7gagaqbrm3n8j1m6"; depends=[cli dplyr magrittr purrr rlang tidyr tidyverse]; }; zetadiv = derive2 { name="zetadiv"; version="1.2.1"; sha256="0m147z864g2pca28gbna1bb7jqr2f74x15fj8v8hhs3a2lr8lh37"; depends=[car geodist glm2 mgcv nnls scam vegan]; }; @@ -19996,12 +20289,12 @@ in with self; { AWR_Athena = derive2 { name="AWR.Athena"; version="2.0.7-0"; sha256="1j9bqhyk0jzry4g379ml65gwxlszn7pjif1dywgns98jbry8mavh"; depends=[rJava RJDBC]; broken = true; }; AWR_KMS = derive2 { name="AWR.KMS"; version="0.1"; sha256="00aqhyqlncsv0vfcyhaazxaclwm63v5kscssash7529avdwd4gqg"; depends=[AWR jsonlite rJava]; broken = true; }; ActiSleep = derive2 { name="ActiSleep"; version="0.2.1"; sha256="0nkfddfv0g1bvsg6811lrmy0cx7knmi225snyp22bh9ly9fnlqp8"; depends=[accelerometry DBI dplyr lazyeval lubridate RSQLite stringr tibble]; broken = true; }; + ActiveDriverWGS = derive2 { name="ActiveDriverWGS"; version="1.2.0"; sha256="0xnplgwxd197a4d422bsxg753q158i12ils16awd1cw30wafdxkk"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicRanges IRanges S4Vectors]; broken = true; }; AdapEnetClass = derive2 { name="AdapEnetClass"; version="1.2"; sha256="01k3mj4g1ckbng7wkzzn9h0k9yf01cpnnkly0sjda574c5jhj0rc"; depends=[glmnet imputeYn lars quadprog]; broken = true; }; AdaptFitOS = derive2 { name="AdaptFitOS"; version="0.69"; sha256="0mclsnsxjyg1q7p7654gjsczzdzpa6avx3b9jpmdb0n63zdgmwy3"; depends=[MASS mgcv nlme SemiPar]; broken = true; }; AdjBQR = derive2 { name="AdjBQR"; version="1.0"; sha256="14437pyz9v09ighwqvy1lcw0vfp2gaqzs9nzrb1gkfbb8ndzjw7k"; depends=[coda MHadaptive quantreg survival]; broken = true; }; AirSensor = derive2 { name="AirSensor"; version="1.0.8"; sha256="0wpfg3mry1vdyd9v1981hasizj1mn5wy60ig9swxlqdm7j11wxan"; depends=[countrycode cowplot dplyr dygraphs geodist geosphere GGally ggmap ggplot2 gridExtra httpcode httr jsonlite leaflet lubridate magrittr MazamaCoreUtils MazamaLocationUtils MazamaSpatialUtils openair PWFSLSmoke RColorBrewer readr rlang scales seismicRoll sp stringr tibble tidyr tidyselect worldmet xts zoo]; broken = true; }; AllPossibleSpellings = derive2 { name="AllPossibleSpellings"; version="1.1"; sha256="0ksfm2pfjka3yjgcd257v7sns1niaylsfxvhhh2jwdi016cpdw10"; depends=[]; broken = true; }; - AlleleShift = derive2 { name="AlleleShift"; version="1.1"; sha256="1cmmxwp3qq28hln6k9hfv61b53nwx08iidhcxj8bdwv7msyp9f8k"; depends=[adegenet BiodiversityR vegan]; broken = true; }; AlphaHull3D = derive2 { name="AlphaHull3D"; version="2.0.0"; sha256="1jp4m2yd9z8m4gz5hfa08qm02kalrzy6pbjf3rfcb0xjglk1lngr"; depends=[BH Rcpp RcppCGAL RcppEigen rgl Rvcg]; broken = true; }; AlphaVantageClient = derive2 { name="AlphaVantageClient"; version="0.0.1"; sha256="095m850v945lw7i3qd812p28srdb5hdk9h52zf6bkr166zai1ni0"; depends=[httr xts]; broken = true; }; AnDE = derive2 { name="AnDE"; version="1.0"; sha256="1yil8ab50wvlqmdla9kmfba8vfgy5r694r6igb58s6vnmld78yf2"; depends=[discretization foreign functional stringr]; broken = true; }; @@ -20009,7 +20302,6 @@ in with self; { AnimalAPD = derive2 { name="AnimalAPD"; version="1.0.0"; sha256="1csa6disrg11hpxg4zw0jay15srw9lsgbhl1xgl7hpdr3nqsv3s7"; depends=[activityGCMM brms circular ggplot2 gridExtra loo overlap]; broken = true; }; AnnotLists = derive2 { name="AnnotLists"; version="1.2"; sha256="1g2khb2ggniwg2zcjamsm3bxyrl2zabvk540b5vyy9am9k83m1g9"; depends=[]; broken = true; }; AntWeb = derive2 { name="AntWeb"; version="0.7"; sha256="1ykfg3zzjdvjppr2l4f26lx00cn5vaqhhz1j1b5yh113ggyl40qw"; depends=[assertthat httr leafletR plyr rjson]; broken = true; }; - Apollonius = derive2 { name="Apollonius"; version="1.0.0"; sha256="0dnw42bnzl8qk0f6ylmfp0479d68sy89pbpz23z1cq0ndyrddnmx"; depends=[abind BH gyro plotrix randomcoloR Rcpp RcppCGAL RcppEigen]; broken = true; }; AquaBPsim = derive2 { name="AquaBPsim"; version="0.0.1"; sha256="0bf83kp8j7il5q9kr8r0pxlnsf6l9nvhgkny4y5wgc8pbki0dsmz"; depends=[MASS matlib pedigree readxl]; broken = true; }; AssotesteR = derive2 { name="AssotesteR"; version="0.1-10"; sha256="0aysilg79vprcyjirqz6c5s1ry1ia92xik3l38qrw1gf3vfli9cw"; depends=[mvtnorm]; broken = true; }; AtmRay = derive2 { name="AtmRay"; version="1.31"; sha256="162078jd032i72sgaar9hqcnn1lh60ajcqpsz4l5ysxfkghcxlh8"; depends=[]; broken = true; }; @@ -20022,6 +20314,7 @@ in with self; { BBMM = derive2 { name="BBMM"; version="3.0"; sha256="1cvv786wf1rr5906qg1di2krrv5jgw3dnyl8z2pvs8jyn0kb3fkj"; depends=[]; broken = true; }; BBMV = derive2 { name="BBMV"; version="2.1"; sha256="11d4wd1zx99hrhwagw73jkk088rz5vgkjml6mckssc2iqvhj1dc9"; depends=[ape]; broken = true; }; BBRecapture = derive2 { name="BBRecapture"; version="0.2"; sha256="1w0m8p4mwjsycv9krmsgdyjckic2nwxbyhrz1s2gng2v1h20zvlf"; depends=[HI lme4 locfit secr]; broken = true; }; + BBcor = derive2 { name="BBcor"; version="1.0.3"; sha256="160d34an9837i9myw9m0yxplh1z2cmhx2wc7m59dlld5zap4glag"; depends=[bayeslincom ggplot2 pbapply psych Rdpack wdm]; broken = true; }; BCA = derive2 { name="BCA"; version="0.9-3"; sha256="0ksd6b0ykydgdn33x29bwwqkrp23cvdj3imps0l6qs1p4465j5nf"; depends=[car clv flexclust Rcmdr RcmdrMisc rpart]; broken = true; }; BCDAG = derive2 { name="BCDAG"; version="1.0.0"; sha256="1a4ylby1hm2pfdf22qvw1qpgs742y77kpvmymikx8pc1vnhmwjih"; depends=[gRbase lattice mvtnorm]; broken = true; }; BCellMA = derive2 { name="BCellMA"; version="0.3.4"; sha256="1njprs7ksv0w18ffs0agz0290aa2akw48225iaa3bjhbl08dpidl"; depends=[ggplot2 reshape2]; broken = true; }; @@ -20061,6 +20354,7 @@ in with self; { BayesianAnimalTracker = derive2 { name="BayesianAnimalTracker"; version="1.2"; sha256="1pgjijqznfdpvw296h5vksnxgspxs7qhy6s84ww7abnlhg59bz5s"; depends=[TrackReconstruction]; broken = true; }; BayesianFROC = derive2 { name="BayesianFROC"; version="1.0.0"; sha256="03f0cj528cb4rhkzs4vw4k1wq4gxb3zq121pamjwhbal93b8mz7a"; depends=[bridgesampling car crayon fastDummies ggplot2 knitr pracma Rcpp rhandsontable rstan shiny shinydashboard shinyjs shinythemes]; broken = true; }; BiOFI = derive2 { name="BiOFI"; version="0.1.0"; sha256="0dhqfv1z2r495wr4higpwm2mc1rjgimc9z5w89fshs78y9gj2mrp"; depends=[dplyr ggplot2 ggrepel Hmisc htmlwidgets igraph magrittr networkD3 ppcor tidyverse visNetwork]; broken = true; }; + BiProbitPartial = derive2 { name="BiProbitPartial"; version="1.0.3"; sha256="0y19b8bkwr7rpygmj03013slmfbyd7aj6714hm14w5rdbnckymw3"; depends=[coda Formula mvtnorm numDeriv optimr pbivnorm Rcpp RcppArmadillo RcppTN]; broken = true; }; BigDataStatMeth = derive2 { name="BigDataStatMeth"; version="0.99.32"; sha256="0iz6pzlhkziwdwv80sy9zcxfvkxxjhqmgn7lk7lv1mkhywqkd9jk"; depends=[beachmat BH data_table Rcpp RcppEigen RcppParallel RCurl rhdf5 Rhdf5lib RSpectra]; broken = true; }; BigTSP = derive2 { name="BigTSP"; version="1.0"; sha256="1jdpa8rcnrhzn0hilb422pdxprdljrzpgr4f26668c1vv0kd6k4v"; depends=[gbm glmnet randomForest tree]; broken = true; }; BinQuasi = derive2 { name="BinQuasi"; version="0.1-6"; sha256="0jf7zf3yqr2kgcm6h35234x2dqf65d2dzsh63b4q8m5l36r77k59"; depends=[BiocGenerics csaw edgeR GenomicAlignments GenomicRanges IRanges mgcv pracma quadprog RMySQL Rsamtools S4Vectors SummarizedExperiment]; broken = true; }; @@ -20069,7 +20363,9 @@ in with self; { BioMedR = derive2 { name="BioMedR"; version="1.2.1"; sha256="0l3nmnqv0gzkbby4fhajbba910zpnbyckvxwds353pn54g9pcry7"; depends=[Biostrings ChemmineR fmcsR GOSemSim MASS org_Hs_eg_db pls randomForest rcdk RCurl rjson]; broken = true; }; Biolinv = derive2 { name="Biolinv"; version="0.1-3"; sha256="1c081rhbgl6n76p2knaiyvjx0l02slix92vgfl2spss5cb9qzkln"; depends=[classInt fields raster sp spatstat spatstat_core spatstat_geom]; broken = true; }; Biopeak = derive2 { name="Biopeak"; version="1.0"; sha256="1l08m1jl8yygbdfzk8klpj1q2m7icvxi98vmk7akxs0sswjc6wd2"; depends=[cluster dbscan factoextra gplots RColorBrewer]; broken = true; }; + BiplotML = derive2 { name="BiplotML"; version="1.1.0"; sha256="1wrn3bz3lwh05fs97m4zq12xy7vgkwb9kn4xvx5kfiipps1kqw8s"; depends=[optimr optimx shapes]; broken = true; }; BivarP = derive2 { name="BivarP"; version="1.0"; sha256="08f7sphylaj3kximy1avaf29hxj2n800adsnssh01p9bcxnzb2i4"; depends=[copula dfoptim survival]; broken = true; }; + BlanketStatsments = derive2 { name="BlanketStatsments"; version="0.1.2"; sha256="00zh3ivqrzlz6wz0nalmdqp8pfki3kkxm9idh2ri6sfxsb6kfdp6"; depends=[assertive_types basecamb DescTools Hmisc survAUC survival]; broken = true; }; BlockFeST = derive2 { name="BlockFeST"; version="2.0"; sha256="1fcl3yc1cf09znqbj787d3fd2kl5rp63la7pxawsgmap7nxwkp65"; depends=[BASIX]; broken = true; }; BlockMessage = derive2 { name="BlockMessage"; version="1.0"; sha256="1jrcb9j1ikbpw098gqbcj29yhffa15xav90y6vpginmhbfpwlbf4"; depends=[]; broken = true; }; Bmix = derive2 { name="Bmix"; version="0.6"; sha256="17swhn2p7jv29fkspacg2v181lkc9yd3xww2fx31xs8hsndcm857"; depends=[mvtnorm]; broken = true; }; @@ -20089,6 +20385,7 @@ in with self; { CENFA = derive2 { name="CENFA"; version="1.1.1"; sha256="0b1zpazbqynlnmf8k25r5bjmidymskqc96xpmwqkl23xlz1f2x3s"; depends=[doSNOW foreach magrittr pbapply raster Rcpp snow sp]; broken = true; }; CHCN = derive2 { name="CHCN"; version="1.5"; sha256="18n8f002w0p0l1s5mrrsyjddn10kdbb6b7jx1v9h1m81ifdbv0xb"; depends=[bitops RCurl]; broken = true; }; CHsharp = derive2 { name="CHsharp"; version="0.4"; sha256="19mb5zzi9x4pm2z9jbha5dz4k5f1iqjv31aisyv4qh14k5ysdz2i"; depends=[KernSmooth scatterplot3d]; broken = true; }; + CIDER = derive2 { name="CIDER"; version="0.99.1"; sha256="0ag2gyrjjyq4r4xssmz05cg1sh8mmq54d5mynhwm5k53zcpk8i8r"; depends=[dbscan doParallel edgeR foreach ggplot2 igraph kernlab limma pheatmap Seurat viridis]; broken = true; }; CIFsmry = derive2 { name="CIFsmry"; version="1.0.1.1"; sha256="1m2m2zvg9ghy3bm2sll7jp4xm2vw58kc5xaxd2c9k82771m3a4j0"; depends=[]; broken = true; }; CISE = derive2 { name="CISE"; version="0.1.0"; sha256="10mbi4v8dfdc9ngnrrmxpng8fnig5m8nv7799jksbcf6pnj8yv51"; depends=[far gdata glmnet MASS Matrix rARPACK]; broken = true; }; CLSOCP = derive2 { name="CLSOCP"; version="1.0"; sha256="0rkwq9rl2ph4h5zwb2i3yphjyzxmh6b6k23a8gcczycx6xdq4yhw"; depends=[Matrix]; broken = true; }; @@ -20101,9 +20398,9 @@ in with self; { COSINE = derive2 { name="COSINE"; version="2.1"; sha256="10ypj849pmvhx117ph3k1jqa62nc4sdmv8665yahds7mh0ymhpjj"; depends=[genalg MASS]; broken = true; }; COUSCOus = derive2 { name="COUSCOus"; version="1.0.0"; sha256="1ykqi72v8v1b3g9qy6h34dvk5fynzf1rl2mby65p08axmaba5798"; depends=[bio3d matrixcalc]; broken = true; }; CRAC = derive2 { name="CRAC"; version="1.0"; sha256="0vnqmmmwakx5jnzqp20dng35p7rvmz3ypm2m7bs41m8nhh2wq1xa"; depends=[]; broken = true; }; + CSCDRNA = derive2 { name="CSCDRNA"; version="1.0.3"; sha256="0ym6bzk8n9kf0pvd3h4dv2hhxmmrr54hvs7vccmxrhxikr8ix5iy"; depends=[Biobase BisqueRNA limSolve MAST nlshrink plyr Seurat]; broken = true; }; CSFA = derive2 { name="CSFA"; version="1.2.0"; sha256="1nkyhk8qhrrlx8v26yw86l954m4xfcxma4pqbhgw95jvqql5h3li"; depends=[elasticnet fabia FactoMineR pls randomcoloR snowFT]; broken = true; }; CSUV = derive2 { name="CSUV"; version="0.1.1"; sha256="1gh8gxwnrg4j017c08xfhm57rwci24sqmxxx00k3d0mw6j0mbdvw"; depends=[caret doParallel DT futile_logger ggplot2 glmnet HDCI MASS ncvreg relaxo reshape2 shiny shinyjs]; broken = true; }; - CTD = derive2 { name="CTD"; version="1.1.0"; sha256="0rc8i01r3fxld01qliybmbifgb5vb55dwk5arzgv95mrxsrbs4ml"; depends=[igraph]; broken = true; }; CTP = derive2 { name="CTP"; version="3.0.1"; sha256="02f423y7yx0hchzghfdbrrljsfq3af1wcbvk8z1q5wyzq99xcag5"; depends=[clinfun diagram dplyr emmeans Gmisc magrittr MASS shape survival]; broken = true; }; CVTuningCov = derive2 { name="CVTuningCov"; version="1.0"; sha256="1bwzis82lqwcqp2djy4bnd3vvjr47krlv3pdc5msh12wcs0xhs7n"; depends=[]; broken = true; }; CVarE = derive2 { name="CVarE"; version="1.1"; sha256="132bsqvdhalifn47xka23ikas1axxkg4jw8yja6ba8dflb8r753i"; depends=[mda]; broken = true; }; @@ -20118,7 +20415,6 @@ in with self; { CityPlot = derive2 { name="CityPlot"; version="2.0"; sha256="0lskgxmagqjglvpq39hgbygkf4qp28i2bj6b4m2av1s3pzb4465g"; depends=[]; broken = true; }; CityWaterBalance = derive2 { name="CityWaterBalance"; version="0.1.0"; sha256="0nvm6bv2cxszjf33xgn1xcvhrgrgbdcar0jahwf7bs03gdlpmgi1"; depends=[dataRetrieval dplyr EcoHydRology geoknife lubridate reshape2 tgp xts zoo]; broken = true; }; ClimDown = derive2 { name="ClimDown"; version="1.0.8"; sha256="0qcag9jwvhi9yss55wy5jxabrvym9hljn1fs5gfkzjs5hiwv3gxv"; depends=[abind fields foreach ncdf4 PCICt seas udunits2]; broken = true; }; - ClueR = derive2 { name="ClueR"; version="1.4"; sha256="0awl3ag48idg0396hcgqrh5f16mbgximr5xbxjiimib5zysdc558"; depends=[e1071]; broken = true; }; ClustMMDD = derive2 { name="ClustMMDD"; version="1.0.4"; sha256="0sblf3crpai53dflhyi27yn6mg0xyy9dxhwsk8j57sq5vr50x686"; depends=[Rcpp]; broken = true; }; CoinMinD = derive2 { name="CoinMinD"; version="1.1"; sha256="0invnbj5589wbs0k2w5aq9qak7axc3s0g9nw85c48lnl0v95s91i"; depends=[MCMCpack]; broken = true; }; ColorPalette = derive2 { name="ColorPalette"; version="1.0-1"; sha256="1dsj5njikx3qm2lnamqqg4qgwwyr11fwx9s5sdi7dkfx3nmf6dac"; depends=[]; broken = true; }; @@ -20184,11 +20480,11 @@ in with self; { Density_T_HoldOut = derive2 { name="Density.T.HoldOut"; version="2.00"; sha256="0kh5nns1kqyiqqfsgvxhx774i2mf4gcim8fp5jjyq577x4679r31"; depends=[histogram]; broken = true; }; DependencyReviewer = derive2 { name="DependencyReviewer"; version="1.2.3"; sha256="0zyya2r3k2pxcjyzxx615pdg00vywzybk848fcchmhdivy0p0am0"; depends=[cli desc dplyr knitr lintr magrittr pak pkgdepends readr rlang stringr tidygraph]; broken = true; }; DetSel = derive2 { name="DetSel"; version="1.0.4"; sha256="01mpjy1cmgbrchdjl0gmrq3zx3mlkznml1qcradj2v5mgz26ifrv"; depends=[ash]; broken = true; }; - DiffNet = derive2 { name="DiffNet"; version="1.0-0"; sha256="04dvf0qxnc6jizwfjxw731j7d2fxyapk06rmqvga6h3p075q0mqk"; depends=[data_table doParallel foreach gplots Hmisc igraph lsa Matrix qlcMatrix Rcpp RcppEigen]; broken = true; }; DiffusionRgqd = derive2 { name="DiffusionRgqd"; version="0.1.3"; sha256="1gf5jpvimfrc9ccva0jk85rl4zfkbijm2305ky1rxcgm4kgw4lax"; depends=[colorspace Rcpp RcppArmadillo rgl]; broken = true; }; DiffusionRimp = derive2 { name="DiffusionRimp"; version="0.1.2"; sha256="1h7145ldlgwrrwj4l1wxdp2rbg2pm4v3pngiq0saz0xi3vpcxwl6"; depends=[colorspace Rcpp RcppArmadillo rgl]; broken = true; }; DiffusionRjgqd = derive2 { name="DiffusionRjgqd"; version="0.1.1"; sha256="1yb1jaq324qm2x8cl3bs2dflnsx8yfygpw2m3kk5hzaai9gfkqjf"; depends=[colorspace Rcpp RcppArmadillo rgl]; broken = true; }; DiscriMiner = derive2 { name="DiscriMiner"; version="0.1-29"; sha256="1ii8aa4dwfk991qdnpmkva20wvs5fqcna9030c799ybf11qpdass"; depends=[]; broken = true; }; + Disequilibrium = derive2 { name="Disequilibrium"; version="1.1"; sha256="1jm5n01ih4rnga13058yh939zp2lvjn5pgb6rrwp5fdlk5kqsgb0"; depends=[Formula numDeriv optimr]; broken = true; }; DistributionFitR = derive2 { name="DistributionFitR"; version="0.1"; sha256="0wg43gqsdy1ja0l489k27k9q1w2zq45wzmqnv9wfc734rf8kvlba"; depends=[doParallel foreach stringr]; broken = true; }; DivInsight = derive2 { name="DivInsight"; version="0.1.0"; sha256="0chhr94id5n9zmkif49haqa2fjfhdhddp3ikwyfxp2cwmq223v88"; depends=[dplyr geosphere ggplot2 leaflet rgbif vegan]; broken = true; }; DnE = derive2 { name="DnE"; version="2.1.0"; sha256="02cbfb3m9xf24wkgqc06k3k0rx7qlqh4ma43khg6fpvif6yyahrn"; depends=[]; broken = true; }; @@ -20205,20 +20501,17 @@ in with self; { DynComm = derive2 { name="DynComm"; version="2020.1.6"; sha256="09nhcp9rldwrybwhyg86mgpgwq4hzlpp4rm5a5gl33nnhvcdm0mx"; depends=[igraph Rcpp Rdpack]; broken = true; }; DynamicDistribution = derive2 { name="DynamicDistribution"; version="1.1"; sha256="1s78hpj2pxjs4vixin1i816qjbn3wk7b8rd2zdjp4d4rbxifcqf5"; depends=[]; broken = true; }; EBASS = derive2 { name="EBASS"; version="0.1"; sha256="14hxzj06wrc4ihflr7dqk28fsjwbcizr0jy54vhv0mk1y1gd4201"; depends=[]; broken = true; }; - EDCimport = derive2 { name="EDCimport"; version="0.3.0"; sha256="0kb5m60x4pgj5d4m2wmq0mf5xv7v4j3nmlyx8ss4l6hlb3ykq03z"; depends=[cli dplyr forcats ggplot2 glue haven labelled purrr readr rlang stringr tibble tidyr tidyselect]; broken = true; }; EDFIR = derive2 { name="EDFIR"; version="1.0"; sha256="0nv1badyg1dri6z91fvs68a72g22vdg0rpi3fkpxw527r11fvrrv"; depends=[geometry lpSolve MASS vertexenum]; broken = true; }; - EGAnet = derive2 { name="EGAnet"; version="2.0.1"; sha256="09m589sji3l7kdgg5mqsmpjk0adn0kzi0vpqqks02x3pf81k5gqr"; depends=[BGGM future future_apply GGally ggdendro ggplot2 ggpubr glasso GPArotation igraph lavaan Matrix network progressr qgraph semPlot sna]; broken = true; }; - EHRtemporalVariability = derive2 { name="EHRtemporalVariability"; version="1.1.4"; sha256="02izrgl526znn4xs10c5l3gv0b5chmgr376i26nli988cypmf32h"; depends=[dplyr lubridate MASS plotly RColorBrewer scales viridis xts zoo]; broken = true; }; EIAdata = derive2 { name="EIAdata"; version="0.1.3"; sha256="0cx8x16jn8pfik7yd6vfqh23fqlfxnfj3ya42h5zbvsbka8rislh"; depends=[httr XML xts zoo]; broken = true; }; EILA = derive2 { name="EILA"; version="0.1-2"; sha256="0wxl9k4fa0f7jadw3lvn97iwy7n2d02m8wvm9slnhr2n8r8sx3hb"; depends=[class quantreg]; broken = true; }; EMC = derive2 { name="EMC"; version="1.3"; sha256="0sdpxf229z3j67mr9s7z4adzvvphgvynna09xkkpdj21mpml23p6"; depends=[MASS mvtnorm]; broken = true; }; EMVS = derive2 { name="EMVS"; version="1.2.1"; sha256="1aikms2i77hwv6hrk8kn9wrh1v5j5zm918cwdwm5s6cy8fcqf406"; depends=[Rcpp RcppArmadillo]; broken = true; }; ENMTools = derive2 { name="ENMTools"; version="1.1.1"; sha256="04dvrdw7xnxxa9s1iyxjaf090mmm5kqn5minpz0znjfc9k92cfzs"; depends=[dismo ENMeval forcats ggplot2 ggpubr gridExtra knitr lhs magrittr raster sp spatstat_geom spatstat_random terra]; broken = true; }; + EPGMr = derive2 { name="EPGMr"; version="1.0.0"; sha256="1ii4lccv4hyydy3sd5l7c22pgx27x3mdml20sfbdj85pmpyab6q9"; depends=[]; broken = true; }; EPP = derive2 { name="EPP"; version="0.3.6.1"; sha256="015hp5f3nrf0hqi11cgsi43a97h9cvny4d75hfjd10zf0fj261h9"; depends=[assertthat curl deldir dplyr flexclust httr leaflet leaflet_extras maptools nngeo osrm plyr rgdal rgeos sf sp]; broken = true; }; ES = derive2 { name="ES"; version="1.0"; sha256="1rapwf6kryr6allzbjk6wmxpj9idd3xlnh87rwbh6196xb7rp8lv"; depends=[]; broken = true; }; ESEA = derive2 { name="ESEA"; version="1.0"; sha256="06r5lki32mxkznj6yxvlz0ikqcxm3jbaralv4qp9xrw6dy6yyg27"; depends=[igraph parmigene XML]; broken = true; }; EW = derive2 { name="EW"; version="1.1"; sha256="0wc3v9qisiikvlp28xhlgsxb92fhkm6vslia6d0vpihyai0p1h1g"; depends=[]; broken = true; }; - EWSmethods = derive2 { name="EWSmethods"; version="1.1.2"; sha256="14hqvxsv88n6sqvwh3sqy6k0s7c121b52bm3krnqsxy872hjl346"; depends=[dplyr egg foreach forecast ggplot2 gtools infotheo moments rEDM reticulate scales seasonal tidyr zoo]; broken = true; }; EasyHTMLReport = derive2 { name="EasyHTMLReport"; version="0.1.1"; sha256="1hgg8i7py7bx48cldyc7yydf0bggmbj3fx3kwiv9jh1x5wyh929z"; depends=[base64enc ggplot2 knitr markdown reshape2 scales xtable]; broken = true; }; EcoHydRology = derive2 { name="EcoHydRology"; version="0.4.12.1"; sha256="075kgy6cxppkclk6nj5xs1f5yv9w8cpr09xwhf2101a6wswknb88"; depends=[DEoptim operators topmodel XML]; broken = true; }; EffectsRelBaseline = derive2 { name="EffectsRelBaseline"; version="0.5"; sha256="1dsnakcrgmlx44599ii92wvhxbxrh0hij59709wsskx1x1152zvh"; depends=[]; broken = true; }; @@ -20245,6 +20538,7 @@ in with self; { FREG = derive2 { name="FREG"; version="1.1"; sha256="1f9ss0aj6w6n0x4np6wi3ynhhcibr5zk54gzbkgpk6q3y7pv0qs1"; depends=[fda]; broken = true; }; FacPad = derive2 { name="FacPad"; version="3.0"; sha256="0h7knzin0rfk25li127zwjsyz223w7nx959cs328p6b2azhgn59b"; depends=[MASS Rlab]; broken = true; }; FactMixtAnalysis = derive2 { name="FactMixtAnalysis"; version="1.0"; sha256="1l4wfp39b7g38vdk6jpd5zq08sjhsg0s71f662aca2rj6l3a2x3r"; depends=[MASS mvtnorm]; broken = true; }; + FactoClass = derive2 { name="FactoClass"; version="1.2.8"; sha256="0w20nrhaky2lj9z2if59fppim5063962xv2yl76g28xqgc6rmymq"; depends=[ade4 ggplot2 ggrepel KernSmooth scatterplot3d xtable]; broken = true; }; FactorsR = derive2 { name="FactorsR"; version="1.5"; sha256="1rla44g75hrqalrblr1yaawmyixmivlacn50marqgd9fjh8blgcd"; depends=[]; broken = true; }; Familias = derive2 { name="Familias"; version="2.4"; sha256="1k6ig2zfkr1a4s3s85ygixmmsrb5m8vqqab8l5ffkspgjvh4dfz2"; depends=[kinship2 paramlink Rsolnp]; broken = true; }; FastHCS = derive2 { name="FastHCS"; version="0.0.7"; sha256="0l3fi3siwg2jhsj0jbhgccx8pnwd8h8f4z37g1najb41hw8dwn8d"; depends=[matrixStats Rcpp RcppEigen]; broken = true; }; @@ -20256,6 +20550,7 @@ in with self; { Fiscore = derive2 { name="Fiscore"; version="0.1.3"; sha256="0mxiip7gwhm9ck5a7yn12shk8jwjmq34j99n3shzhh6h482kqs94"; depends=[bio3d dplyr ggplot2 knitr lattice mclust plotly rmarkdown stringr]; broken = true; }; FitAR = derive2 { name="FitAR"; version="1.94"; sha256="1mkk3kvfq4v0pdabnhbwrk31ji2mv2v6ns16xsvvr1qyg2fnx6hq"; depends=[bestglm lattice leaps ltsa]; broken = true; }; FitARMA = derive2 { name="FitARMA"; version="1.6.1"; sha256="02di0pkz6hh92glpn3li6z9azkcqa64ja8zfpy0mkh1l97mw6jsv"; depends=[FitAR]; broken = true; }; + FlexDotPlot = derive2 { name="FlexDotPlot"; version="0.2.2"; sha256="0526cnbq4a34k96b99x8i1pcdn1a70fvc9lagq7yd7bsq6fv2gvs"; depends=[bsplus colourpicker dendextend DT FactoMineR ggdendro ggforce ggplot2 gridExtra grImport2 htmltools magrittr reshape2 scales shiny shinydashboard shinyWidgets sisal]; broken = true; }; FlywayNet = derive2 { name="FlywayNet"; version="0.1.0"; sha256="00sp3m3iv6qifrkk0rncmzidv15b5fj138g0mai95lp280b040va"; depends=[EasyABC igraph modeest Rcpp]; broken = true; }; ForImp = derive2 { name="ForImp"; version="1.0.3"; sha256="0ai4i6q233sdsi8xilpbkxjqdf4pxw93clkdkhcxal6q43rnf7vd"; depends=[homals mvtnorm sampling]; broken = true; }; ForwardSearch = derive2 { name="ForwardSearch"; version="1.0"; sha256="0yd47832piqxzjxgl7bc8pn0c8f7vbgsm9z6894rzyi615kjl70b"; depends=[robustbase]; broken = true; }; @@ -20280,7 +20575,6 @@ in with self; { GRANCore = derive2 { name="GRANCore"; version="0.2.7"; sha256="0xnm7jb2s4ag4qvsfs1fq0f2ikvfqm3bvxhj8kmmxwynwl5pw287"; depends=[switchr]; broken = true; }; GRPtests = derive2 { name="GRPtests"; version="0.1.2"; sha256="12w0vskf1n31zspk3vjgdlhrjwpsysvwwr0l0vm57j6faqc31i3s"; depends=[glmnet MASS randomForest ranger RPtests]; broken = true; }; GSAgm = derive2 { name="GSAgm"; version="1.0"; sha256="18bhk67rpss6gg1ncaj0nrz0wbfxv7kvy1cxria083vi60z0vwbb"; depends=[edgeR survival]; broken = true; }; - GWEX = derive2 { name="GWEX"; version="1.0.2"; sha256="0iykciifbskcrx1qv4874nxli1sq6nbmlfinq4ksir3p93y7ds87"; depends=[abind doParallel EnvStats fGarch foreach lmomco MASS mvtnorm nleqslv Renext]; broken = true; }; GWG = derive2 { name="GWG"; version="1.0"; sha256="1va0cd229dhhi1lmrkpwapcm96hrdmxilrmba02xnl7ikhisw0my"; depends=[]; broken = true; }; GaDiFPT = derive2 { name="GaDiFPT"; version="1.0"; sha256="15fnj1w30h0zdj032f3js0bbb1qlyk4b54a4aclykwzicqdgalkg"; depends=[]; broken = true; }; GapAnalysis = derive2 { name="GapAnalysis"; version="1.0.2"; sha256="0ky1njrymh102dy7sna2cm5f5gyx4s7k77bnsdal1yndgw7ppqvx"; depends=[data_table fasterize geosphere raster rmarkdown sf sp tmap]; broken = true; }; @@ -20289,6 +20583,7 @@ in with self; { GenKern = derive2 { name="GenKern"; version="1.2-60"; sha256="12qmd9ydizl7h178ndn25i4xscjnrssl5k7bifwv94m0wrgj4x6c"; depends=[KernSmooth]; broken = true; }; GeneBook = derive2 { name="GeneBook"; version="1.0"; sha256="1cg8zyr7rbshj3shhzkrxs910dsz4brhh51jvn2qzipzd8dbvxiv"; depends=[dplyr repmis stringr svDialogs]; broken = true; }; GeneClusterNet = derive2 { name="GeneClusterNet"; version="1.0.1"; sha256="1xi4c041c4m39f9wb5fklgmhi6ng78iwzzqch5xk9hx5blq6zd4m"; depends=[G1DBN igraph MASS]; broken = true; }; + GenomeAdapt = derive2 { name="GenomeAdapt"; version="1.0.0"; sha256="0jsxqhx62vbsr0hcqk9wrfsg3l3wbnx64pzxx18ps366vg7fxmii"; depends=[gdsfmt qvalue robust SNPRelate]; broken = true; }; GenomicMating = derive2 { name="GenomicMating"; version="2.0"; sha256="02v1pkarmardf7g8hf2n4jj4cq4707g5lcc7gnwsiyyh7pknd1y6"; depends=[dplyr emoa kohonen LowRankQP magrittr plotly qtl Rcpp RcppArmadillo scatterplot3d SOMbrero]; broken = true; }; GenomicTools = derive2 { name="GenomicTools"; version="0.2.9.7"; sha256="196shxbrcgiwaa7aav2aipsbj1smrkbhinn44aw9qfvz2x9zdz0m"; depends=[circlize data_table GenomicTools_fileHandler gMWT Rcpp RcppArmadillo snpStats stringr]; broken = true; }; GeoBoxplot = derive2 { name="GeoBoxplot"; version="1.0"; sha256="164dh49ac3fx38fdglv32lmz92ca8jdd98cbhz6mxsk8r0jcladw"; depends=[]; broken = true; }; @@ -20303,10 +20598,10 @@ in with self; { GlobalFit = derive2 { name="GlobalFit"; version="1.2"; sha256="01s51nxcsl8xxn6khbv5jsvpwblwf0iamvr477a1rraqqqj94zx0"; depends=[sybil]; broken = true; }; GmAMisc = derive2 { name="GmAMisc"; version="1.2.1"; sha256="0rvdphdgk1bdfamwf6spy5k9qa5ws92mvf3q3dlhn6qfazp7j4hr"; depends=[caTools classInt cluster coin corrplot DescTools dismo ggplot2 ggrepel gridExtra Hmisc InPosition kimisc lsr maptools plyr pROC raster RcmdrMisc rgdal rgeos sp spatstat_core spatstat_geom spatstat_random]; broken = true; }; GrassmannOptim = derive2 { name="GrassmannOptim"; version="2.0.1"; sha256="1gdjx9dazrff2nj16044b7vr7jwddf5cj0iwnlhan46fnibsfwjf"; depends=[Matrix]; broken = true; }; - Guerry = derive2 { name="Guerry"; version="1.8.1"; sha256="1pci00b69sk9qlgpkbmvcijlbh48xdmshh57xgi84m85j16i4rlw"; depends=[sp]; broken = true; }; GuessCompx = derive2 { name="GuessCompx"; version="1.0.3"; sha256="1xbkh1wh2z0n964w8lwi7q4rr7mls0awf5k7n5jjklhq4b6gswic"; depends=[boot dplyr ggplot2 lubridate reshape2]; broken = true; }; GxM = derive2 { name="GxM"; version="1.1"; sha256="02rv8qb46ylk22iqn9cgh63vkyrg9a8nr1d0d3j5hqhi0wyhc41r"; depends=[minqa nlme Rcpp]; broken = true; }; HAPim = derive2 { name="HAPim"; version="1.3"; sha256="03qy0pxazv3gdq3fck7171ixilb9zi1dwnvc4v7d726g0lvn80pg"; depends=[]; broken = true; }; + HARModel = derive2 { name="HARModel"; version="1.0"; sha256="17sajqi2g5z69gvnfhkn850jkavi8syhm58xadd2khrm73nvwh2i"; depends=[Rcpp RcppArmadillo sandwich xts zoo]; broken = true; }; HARtools = derive2 { name="HARtools"; version="0.0.5"; sha256="10a92jsk1ccgxi5g6byrs4fbj5l2kih7vhib0jg6spdqi6rhqla1"; depends=[assertthat htmltools htmlwidgets jsonlite magrittr]; broken = true; }; HBglm = derive2 { name="HBglm"; version="0.1"; sha256="1sral7lh5qw5mn31n8459pk52frgw1bjq0z5ckpsnbc4qf3xxcjn"; depends=[bayesm Formula MfUSampler sns]; broken = true; }; HCD = derive2 { name="HCD"; version="0.1"; sha256="158szwhpxwj2dj7sibyh8l92dk9cmy6acapmk8wf5hmfybdpgbsh"; depends=[data_table data_tree dendextend irlba Matrix randnet RSpectra stringr]; broken = true; }; @@ -20366,14 +20661,15 @@ in with self; { Imap = derive2 { name="Imap"; version="1.32"; sha256="0b4w0mw9ljw6zxwvi0qzb08yq9n169lzgkdcwizrd07x9k9xjxs7"; depends=[]; broken = true; }; IndianTaxCalc = derive2 { name="IndianTaxCalc"; version="1.0.2"; sha256="1fxw884wj9n8drk2xz3rgr4f7b4fckh5firrf5gdz6d1nk9hdvc1"; depends=[]; broken = true; }; InfDim = derive2 { name="InfDim"; version="1.0"; sha256="0rh3ch0m015xjkxy08vf9pc6q7azjc6sgicd2j6cwh611pqq39wq"; depends=[]; broken = true; }; + Inflect = derive2 { name="Inflect"; version="1.1.0"; sha256="09904nn33libjv29n74n5nq1hj6ka8a4h3jllwpbxk9hsmnlmf9h"; depends=[data_table ggplot2 optimr plotrix readxl tidyr UpSetR writexl]; broken = true; }; InformationValue = derive2 { name="InformationValue"; version="1.2.3"; sha256="1b5g2wyp7x5cdhmf4325n3q7afa6i352lh80j28c8s4356pr3w9j"; depends=[data_table ggplot2]; broken = true; }; + IntLIM = derive2 { name="IntLIM"; version="2.0.2"; sha256="04kjmp6akbw9yjg0lr19aripm5vjzm4bk7xqxm38hq9wn9cgli4g"; depends=[ComplexHeatmap DT ggplot2 heatmaply highcharter htmltools KernSmooth margins MASS RColorBrewer reshape2 rmarkdown shiny shinydashboard shinyFiles shinyjs testthat]; broken = true; }; IntLik = derive2 { name="IntLik"; version="1.0"; sha256="13ww5bsbf1vnpaip0w53rw99a8hxzziibj7j66cm31jmi8l6fznf"; depends=[maxLik]; broken = true; }; Interact = derive2 { name="Interact"; version="1.1"; sha256="1g9zhafdpr7j410bi8p03d8x9f8m3n329x8v01yk15f65fp7pl1d"; depends=[]; broken = true; }; InteractiveIGraph = derive2 { name="InteractiveIGraph"; version="1.0.6.1"; sha256="0srxlp77xqq0vw2phfv7zcnqswi2i5nzkpqbpa5limqx00jd12zy"; depends=[igraph]; broken = true; }; Interpol_T = derive2 { name="Interpol.T"; version="2.1.1"; sha256="1fbsl1ypkc65y6c0p32gpi2a2aal8jg02mclz7ri57hf4c1k09gz"; depends=[chron date]; broken = true; }; IsoCI = derive2 { name="IsoCI"; version="1.1"; sha256="0r7ksfic6p2v95c953s4gbzzclk4ldxysm8szb8xba1w0nx2izil"; depends=[KernSmooth]; broken = true; }; IsoCorr = derive2 { name="IsoCorr"; version="1.0"; sha256="0rhbclbpfd9d0dawbwwprlzx2j9k59gsmrb11yabiv5305b7vpx8"; depends=[]; broken = true; }; - IsoMemo = derive2 { name="IsoMemo"; version="1.0.6"; sha256="1srs8iiy1w18gyzkw60gxw90mdmywmlnfsw3da4izl42x0ngqjww"; depends=[curl jsonlite modules]; broken = true; }; JASPAR = derive2 { name="JASPAR"; version="0.0.1"; sha256="0wiyn7cz45hwy9zkvacx28zdrg78q6715cg4r9xgcb39q25s0dcy"; depends=[gtools]; broken = true; }; JGEE = derive2 { name="JGEE"; version="1.1"; sha256="078348n623hlyc3n9yh67vv5acsnxapmbwybvrb1i7kawmqw5msi"; depends=[gee MASS]; broken = true; }; JMcmprsk = derive2 { name="JMcmprsk"; version="0.9.10"; sha256="1hkylfrr2036vgkxfs98szm3883bmyvvyr0f3a8xygccf3pn28xc"; depends=[dplyr MASS pracma Rcpp reshape2 statmod]; broken = true; }; @@ -20409,10 +20705,12 @@ in with self; { LOGICOIL = derive2 { name="LOGICOIL"; version="0.99.0"; sha256="1wgg7kigzzk5ghjn3hkjf1bb8d6mvjfmkwq64phri5jpxd742ps9"; depends=[nnet]; broken = true; }; LPStimeSeries = derive2 { name="LPStimeSeries"; version="1.0-5"; sha256="0jmcy8076w4bzfnxaq2m3s60c1wdmywkwzfyrc19wdm8idf666wh"; depends=[RColorBrewer]; broken = true; }; LPTime = derive2 { name="LPTime"; version="1.0-2"; sha256="08lb6884kj9pg12mzx67fdnqb86x5s6yzb72hh3nrz50awj1f8nn"; depends=[orthopolynom]; broken = true; }; + LRQMM = derive2 { name="LRQMM"; version="1.2.3"; sha256="149z6wggyz9p39vanw5m2iw5v69spxdj8ciarrswj5ddvkli7940"; depends=[GeneticsPed kinship2 Matrix MCMCglmm quantreg R_matlab rsvd SparseM sparsesvd]; broken = true; }; LRTH = derive2 { name="LRTH"; version="1.3"; sha256="08vakwb7ca7956gifynzijka441yyx0wd5bq5jfhz56lzcxgfb99"; depends=[]; broken = true; }; LSC = derive2 { name="LSC"; version="0.1.5"; sha256="1nlnwqb24sbgvl96azh8a833ij5xknjr2wr8shs59lm2n63a3ql9"; depends=[fields gam LICORS Matrix RColorBrewer]; broken = true; }; LadR = derive2 { name="LadR"; version="1.0.6"; sha256="14n58y1p14wwxwwrbdqv2kkplma8ficpqx8nd22qp931idijpsji"; depends=[L1pack]; broken = true; }; Lambda4 = derive2 { name="Lambda4"; version="3.0"; sha256="04ikkflfr0nmy1gr3gfldlh2v8mpl82k1wwnzp57d2kn75m9vbxz"; depends=[]; broken = true; }; + LaplaceDeconv = derive2 { name="LaplaceDeconv"; version="1.0.4"; sha256="0n56cmrb536j1vmfizzag1x8wm68c2znpclwbdl8qraqzp8rmffx"; depends=[orthopolynom polynom]; broken = true; }; LiblineaR_ACF = derive2 { name="LiblineaR.ACF"; version="1.94-2"; sha256="1ldkb63yhm1ki8i585wp5byx6y0kvclwy3ncacgcdqqk0p41cyi6"; depends=[]; broken = true; }; LindleyR = derive2 { name="LindleyR"; version="1.1.0"; sha256="163i604q683znp6q544hnv4vibygwvsxcfhh8m7iaqr42li3c0ak"; depends=[lamW]; broken = true; }; LocFDRPois = derive2 { name="LocFDRPois"; version="1.0.0"; sha256="0zzdp9wgwr6wn3grimghpj4vq34x37c8bqg8acfzlzih8frqal3r"; depends=[dplyr ggplot2]; broken = true; }; @@ -20428,10 +20726,10 @@ in with self; { MAVTgsa = derive2 { name="MAVTgsa"; version="1.3"; sha256="0rzal9nsi8y873cbf6hrdyzyxnpd4r1yr9fj66cn0s1c8g93ls0y"; depends=[corpcor foreach MASS multcomp randomForest]; broken = true; }; MAc = derive2 { name="MAc"; version="1.1.1"; sha256="1dawqmziffaz8wgcqzwc0yifdq65abgn24vafkrwa9850048c26f"; depends=[]; broken = true; }; MAclinical = derive2 { name="MAclinical"; version="1.0-5"; sha256="1g0ka1kqww2xim8rp5rznkzn0a541zvf841s3lbphfh9k3y3ixs3"; depends=[e1071 party plsgenomics st]; broken = true; }; + MBCbook = derive2 { name="MBCbook"; version="0.1.1"; sha256="0jmvgyzrahnxfkwdn86k3ffk0zfbbd34ya4zmlnsmp2m9xds7lgn"; depends=[MASS mclust mvtnorm Rmixmod]; broken = true; }; MBCluster_Seq = derive2 { name="MBCluster.Seq"; version="1.0"; sha256="0xbi2r0g0gzsy05qrq1ljr5f5s3glwxj204vk2f1lgwdx3fd116m"; depends=[]; broken = true; }; MBI = derive2 { name="MBI"; version="1.0"; sha256="1lb0sjwa6x360n9a9pagz6yhxh37gxq1fk0f5c3i2sd56ny9jpns"; depends=[]; broken = true; }; MC2toPath = derive2 { name="MC2toPath"; version="0.0.16"; sha256="0jdn9wpxavn2wrml907v23mfxr62wwjdh7487ihjj59g434ry7wh"; depends=[RNetCDF]; broken = true; }; - MCDA = derive2 { name="MCDA"; version="0.0.24"; sha256="08xghwzb19ynzvl8l8z14lm97ggw5x05czjljhvm2ws4sknjpqy7"; depends=[combinat ggplot2 glpkAPI plyr RColorBrewer Rglpk triangle]; broken = true; }; MCDM = derive2 { name="MCDM"; version="1.2"; sha256="0r27y9mqvfnv1m0yi2xdyjr4y1s43d5yav960kz2xa732hrrxw01"; depends=[RankAggreg]; broken = true; }; MCMChybridGP = derive2 { name="MCMChybridGP"; version="5.4"; sha256="19nbch76g7jf53nrb1lyzr3zd0z6rpz2k86mq1r9aidwwxh81g7p"; depends=[MASS]; broken = true; }; MCTM = derive2 { name="MCTM"; version="1.0"; sha256="14xjfskyrqi0m58lkwjfjpss5j7wy3ajr148n526czrrpccg108j"; depends=[]; broken = true; }; @@ -20452,12 +20750,12 @@ in with self; { MInt = derive2 { name="MInt"; version="1.0.1"; sha256="1nk02baainxk7z083yyajxrnadg2y1dnhr51fianibvph1pjjkl6"; depends=[glasso MASS testthat trust]; broken = true; }; MLDAShiny = derive2 { name="MLDAShiny"; version="0.1.0"; sha256="14n8pffzw5y7lq3qx1xly4jwm05cyvs14gn838h6y9yssb16xnmr"; depends=[caret DiscriMiner dplyr e1071 klaR MASS rhandsontable rmarkdown shiny]; broken = true; }; MLDAShiny2 = derive2 { name="MLDAShiny2"; version="0.1.0"; sha256="1mx8js54mrrf16jriy467dysxpkcsza9fvdmpdbmxr5m3y564sc7"; depends=[caret DiscriMiner dplyr e1071 klaR MASS rhandsontable rmarkdown shiny]; broken = true; }; - MLMOI = derive2 { name="MLMOI"; version="0.1.1"; sha256="0fliax6ajacm2i416xi26qlwg3y7iw8y6hykkz0mcwp7djyn3n6s"; depends=[Rdpack rJava Rmpfr XLConnect]; broken = true; }; MLPA = derive2 { name="MLPA"; version="1.10.0"; sha256="1w8vhvs8ri8iyh068g59chz3mn0wapa4jr1wmhjlzwa2c651q2cx"; depends=[]; broken = true; }; MLRShiny = derive2 { name="MLRShiny"; version="0.1.0"; sha256="06zcyz8l4754sjbcql3jd3nq1d2lgj92p5h2bh708z52mww71isw"; depends=[corrgram dplyr forecast psych QuantPsyc shiny shinyAce]; broken = true; }; MLRShiny2 = derive2 { name="MLRShiny2"; version="0.1.0"; sha256="1ygamp0ldz1i0w2xyi205rpd1gd5asw61l36z06j41ghdyiz1lww"; depends=[corrgram dplyr forecast psych QuantPsyc shiny shinyAce]; broken = true; }; MODIS = derive2 { name="MODIS"; version="1.2.9"; sha256="1272b0swij6h6xm18vpjzv0n0l47ck391wgik665bjsdky21d3sm"; depends=[bitops curl devtools mapdata mapedit maps maptools ptw raster rgdal rgeos sf sp]; broken = true; }; MODISSnow = derive2 { name="MODISSnow"; version="0.1.0.0"; sha256="1p0mil074gapw6v8paw9595rzp85hxrfsc65llh0ljalmacwgx04"; depends=[gdalUtils lubridate raster RCurl]; broken = true; }; + MODIStsp = derive2 { name="MODIStsp"; version="2.1.0"; sha256="1nlzfshxzbk848xj4cprb6pm4j4jqxmaa2zmb5qsxx7s68mby5ll"; depends=[assertthat bitops data_table gdalUtilities geojsonio httr jsonlite raster sf stringr xml2 xts]; broken = true; }; MOrder = derive2 { name="MOrder"; version="0.1"; sha256="1vhy20xyvfc18f04hvlb1jm2n0caaz8ysy13w2rra5i4kjdvz52i"; depends=[]; broken = true; }; MPAgenomics = derive2 { name="MPAgenomics"; version="1.2.3"; sha256="0096jy94zpbbd2n862hc4m3i4s7vpl2q3vybx96hvv6qi1ny47cm"; depends=[changepoint glmnet HDPenReg R_utils spikeslab]; broken = true; }; MPINet = derive2 { name="MPINet"; version="1.0"; sha256="1zw3piqhhpagg5qahc2xahxxfdwdk8w94aass1virlpl0f52ik8s"; depends=[BiasedUrn mgcv]; broken = true; }; @@ -20475,6 +20773,7 @@ in with self; { MWRidge = derive2 { name="MWRidge"; version="1.0.0"; sha256="17kvs9npr1ff24z3pv9x2qnfwyy6w3hc7hm60ynzbjlk2rr11xr9"; depends=[glmnet]; broken = true; }; MaXact = derive2 { name="MaXact"; version="0.2.1"; sha256="1n7af7kg54jbr09qk2a8gb9cjh25cnxzj2snscpn8sr8cmcrij0i"; depends=[mnormt]; broken = true; }; MakeYourPalette = derive2 { name="MakeYourPalette"; version="0.1.3"; sha256="0snawchc2rkxglmcg093gik3gwasn4pxqsvz6rm2r1gkbwbazmh4"; depends=[prismatic raster rgdal]; broken = true; }; + MapeBay = derive2 { name="MapeBay"; version="0.1.0"; sha256="1w1lpnm8fd5gmv4ggrlmkaaj45wyx3yclx3fb2mdrp7iyg4rx34c"; depends=[BH broom car dplyr DT heplots highcharter htmltools MANOVA_RM moments MVN mvnormtest nortest purrr Rcpp RcppEigen RcppParallel reshape rstan rstantools shiny shinycssloaders shinydashboard shinydashboardPlus StanHeaders stringr tibble vegan waiter]; broken = true; }; MaskJointDensity = derive2 { name="MaskJointDensity"; version="1.0"; sha256="0nxhsz57cw96in0sg5xg7sicv920kcnxr2rikn39y2qk4vrw6r78"; depends=[ks MASS np plyr]; broken = true; }; MasterBayes = derive2 { name="MasterBayes"; version="2.58"; sha256="0s6zry5nhwg3zbfgqd6zdrys0irf6336gfcba77z7xwssd4gh9j5"; depends=[coda genetics gtools kinship2]; broken = true; }; MatManlyMix = derive2 { name="MatManlyMix"; version="1.1.1"; sha256="1d2vd5b9lirdybjclxh0nn4mghq64qjj4l8vnj95cni5pfa18a2c"; depends=[]; broken = true; }; @@ -20484,6 +20783,7 @@ in with self; { MeshesOperations = derive2 { name="MeshesOperations"; version="0.1.0"; sha256="1fms9yd7m8rl3kr244v9cyf3sx3fgrz13q42ikvhqbxr79fy9f6j"; depends=[BH data_table gmp Rcpp RcppCGAL RcppEigen rgl Rvcg]; broken = true; }; MeshesTools = derive2 { name="MeshesTools"; version="1.0.0"; sha256="0vr7l9g53h1rxyhn8c8l3hmbsh7c2cfl3jvlrnm2jhpfcsp8851g"; depends=[BH data_table gmp PolygonSoup Rcpp RcppCGAL RcppEigen rgl Rvcg]; broken = true; }; MetABEL = derive2 { name="MetABEL"; version="0.2-0"; sha256="0rqjv85mgswrbbp8b8ip6cdmz0cvfy9lm5mcr8a7h38rzgx3g3i3"; depends=[]; broken = true; }; + MetAlyzer = derive2 { name="MetAlyzer"; version="0.1.0"; sha256="1mqc2037q71n1k7ncym52vn0cc5ndsxq4r87k492lp1b3i7h1wi3"; depends=[agricolae dplyr openxlsx rlang tibble tidyr]; broken = true; }; MetFns = derive2 { name="MetFns"; version="3.2.2"; sha256="15fd2d0yysibi2x43qv6b8i1pa18l7z4n0zpmrqhsmvqkgy8sla0"; depends=[astroFns lubridate plotrix pracma]; broken = true; }; MetNorm = derive2 { name="MetNorm"; version="0.1"; sha256="0vfi3k0yp2dz47gwj1n1avs3ji0a2nlrrljz5d0l66zfh4474jb4"; depends=[]; broken = true; }; MetaClean = derive2 { name="MetaClean"; version="1.0.0"; sha256="12vgdizggyz6wx08qf34jfhwgpzfrkgq63fvhfgi5gbf1nhma5zz"; depends=[BiocStyle caret fastAdaboost ggplot2 graph kernlab klaR knitr MLmetrics plotrix randomForest reshape2 Rgraphviz rpart xcms]; broken = true; }; @@ -20506,7 +20806,6 @@ in with self; { MixtureRegLTIC = derive2 { name="MixtureRegLTIC"; version="1.0.0"; sha256="052gyk4gqv49fa2rxbxnib29f1vjxiw4q8llkfhsv8kw5pw38699"; depends=[]; broken = true; }; MoMPCA = derive2 { name="MoMPCA"; version="1.0.1"; sha256="1snixlq35xbzf005d877i493sf1wm48jqlq9515yl1s6lxmav1n7"; depends=[doParallel dplyr foreach magrittr Matrix slam tm topicmodels]; broken = true; }; ModelGood = derive2 { name="ModelGood"; version="1.0.9"; sha256="1y99a7bgwx167pncxj00lbw3cdjj23fhhzl8r24hwnhxr984kvzl"; depends=[prodlim]; broken = true; }; - Momocs = derive2 { name="Momocs"; version="1.4.0"; sha256="08p2kjgfq7h7pwn4lqsfcy4d7rml6n0s1fb90l0iy1a88brbd3br"; depends=[cluster dendextend dplyr geometry geomorph ggplot2 jpeg magrittr MASS progress RColorBrewer rgeos sp tibble vegan]; broken = true; }; MorseGen = derive2 { name="MorseGen"; version="1.2"; sha256="1kq35n00ky70zmxb20g4mwx0hn8c5g1hw3csmd5n6892mbrri8s9"; depends=[]; broken = true; }; MrSGUIDE = derive2 { name="MrSGUIDE"; version="0.1.2"; sha256="1hd0lvvy12r6kxa64vwnjavyv2f7a9jqgjxgmlw86wwh5g09hvfd"; depends=[BH magrittr Rcpp RcppArmadillo yaml]; broken = true; }; MsdeParEst = derive2 { name="MsdeParEst"; version="1.7"; sha256="1zhi1jr30sl7jpsw37lc3akfzixlhm9k2hjkha1pjy5fmd5lddlx"; depends=[MASS moments mvtnorm sde]; broken = true; }; @@ -20533,15 +20832,12 @@ in with self; { NSUM = derive2 { name="NSUM"; version="1.0"; sha256="1as4g3v7qlk9wxlpwhg293980jq9gy6qay77bbcrjf481gvkkbp6"; depends=[MASS MCMCpack]; broken = true; }; NetComp = derive2 { name="NetComp"; version="1.6"; sha256="11rxpdihn575diqfvc7yvxhlr2c19fig4v4a5c6jhqyfdsd60fsv"; depends=[gdata]; broken = true; }; NetData = derive2 { name="NetData"; version="0.3"; sha256="1jf05zwy0c6gmm7kvxlwvai61bz4wpsw7cl0h4i21ipzn1rqxmqj"; depends=[]; broken = true; }; - NetLogoR = derive2 { name="NetLogoR"; version="0.3.11"; sha256="0pppcpij4wn1gig7lyh122x52dx8x1dy98v5cphmrap8mpj4x7h2"; depends=[abind CircStats data_table matrixStats quickPlot raster sf sp SpaDES_tools]; broken = true; }; NetworkReg = derive2 { name="NetworkReg"; version="1.0"; sha256="0ymbigvl1n5348g77jqs1bcda00kdqrm7zifc0ibh5mwsrx6cmds"; depends=[Matrix randnet RSpectra]; broken = true; }; - NobBS = derive2 { name="NobBS"; version="0.1.0"; sha256="0i0jyny1c29knpcl4szqwyxvdc3dqjfk5lf2xvwjdx3qas92w03l"; depends=[coda dplyr magrittr rjags]; broken = true; }; NoiseFiltersR = derive2 { name="NoiseFiltersR"; version="0.1.0"; sha256="0y90si8f5hsi273g10hw700r72la30hwqlwg59gaq76wqlkm8j0p"; depends=[caret e1071 kknn MASS nnet randomForest rJava rpart RWeka]; broken = true; }; NominalLogisticBiplot = derive2 { name="NominalLogisticBiplot"; version="0.2"; sha256="0m9442d9i78x57gdwyl3ckwp1m6j27cam774zkb358dw5nmwxbmz"; depends=[gmodels MASS mirt]; broken = true; }; NonpModelCheck = derive2 { name="NonpModelCheck"; version="4.1"; sha256="0yd30gy1145zizdvy2zh73ppbiz3awg8j1h7j6iabqxy61h0llnw"; depends=[dr]; broken = true; }; NormalBetaPrime = derive2 { name="NormalBetaPrime"; version="2.2"; sha256="03il9c57dbwgw38rzckkk0wkc37z8kfdrb7b4k471gm7mqhsm3m3"; depends=[GIGrvg glmnet HyperbolicDist MASS Matrix pracma pscl truncnorm]; broken = true; }; NormalGamma = derive2 { name="NormalGamma"; version="1.1"; sha256="0r3hhfscif0sx9v8f450yf119gpvf3ilpb8n3ziy4v4qf2jlcfnk"; depends=[histogram optimx]; broken = true; }; - OBsMD = derive2 { name="OBsMD"; version="6.1"; sha256="0jvvcx2lc39rdnlbhykam6cf94lbci9zc1vshwfhvygblnmjgrzr"; depends=[]; broken = true; }; OData = derive2 { name="OData"; version="0.6"; sha256="10r4kfhdabramjmkgc4fl0bljaiqbvc7rq4byas7q8cmji2czw6f"; depends=[RJSONIO XML]; broken = true; }; OLScurve = derive2 { name="OLScurve"; version="0.2.0"; sha256="1zqapfwgwy9rxnbhmlgplkphw1bdia4cyi9q6iwcppw3rjw75f1n"; depends=[lattice]; broken = true; }; ONETr = derive2 { name="ONETr"; version="1.0.3"; sha256="14l56qcmyyk2ivcfkfv7j2k4i1mfrngpi9zcc88w6xfhz5qlb548"; depends=[plyr RCurl XML]; broken = true; }; @@ -20561,11 +20857,13 @@ in with self; { OutlierDC = derive2 { name="OutlierDC"; version="0.3-0"; sha256="1vm3zx4qmj9l0ddfqbksm1qyqzzqrxf93gh4kj52h68zlsfxwv41"; depends=[Formula quantreg survival]; broken = true; }; OutlierDM = derive2 { name="OutlierDM"; version="1.1.1"; sha256="0n8iq464ryc3v4wms7cdka39870w5pg29z9v8gmdsp4d9cfsx9v4"; depends=[MatrixModels outliers pcaPP quantreg]; broken = true; }; OutrankingTools = derive2 { name="OutrankingTools"; version="1.0"; sha256="0z7pslkkinn7flc4xwjg0bsfswf8ad4jv9rmglaj3fmjcx9b6wgj"; depends=[igraph]; broken = true; }; + PAFit = derive2 { name="PAFit"; version="1.2.5"; sha256="07n27g2yy2lskna7qa4j6am3prdcwfnx98ppvcarsxgzvywz0scv"; depends=[ggplot2 igraph knitr magicaxis mapproj MASS network networkDynamic plyr RColorBrewer Rcpp VGAM]; broken = true; }; PAGI = derive2 { name="PAGI"; version="1.0"; sha256="01j1dz5ihqslpwp9yidmhw86l112l7rfkswmf03vss872mpvyp3f"; depends=[igraph]; broken = true; }; PALMO = derive2 { name="PALMO"; version="0.1.2"; sha256="0vh0i5qb26267w5dzply091dh4mcxyza7yyhh7sy2wmwb04834ak"; depends=[circlize ComplexHeatmap cowplot dplyr factoextra ggforce ggplot2 ggrepel knitr lme4 MAST pbapply pheatmap reshape2 Rtsne Seurat tidyverse]; broken = true; }; PAMA = derive2 { name="PAMA"; version="1.2.0"; sha256="12fvkcdkn66gzr193fq9byf64qlq2x9dkjv9hpfw770l4yw496jn"; depends=[ExtMallows mc2d PerMallows rankdist Rcpp]; broken = true; }; PANDA = derive2 { name="PANDA"; version="0.9.9"; sha256="1sf3c49v4mb3mz2imqlqdbh1iab7bc2pxpi8bmgj2jld133555ip"; depends=[cluster GO_db]; broken = true; }; PAutilities = derive2 { name="PAutilities"; version="1.1.0"; sha256="0qqxizq856wkx2x5g5pdnb4srh5xj0xyaljbk3i6nq5q41vrw5xk"; depends=[dplyr equivalence ggplot2 lazyeval lubridate magrittr Rcpp reshape2 rlang]; broken = true; }; + PBRF = derive2 { name="PBRF"; version="1.0.0"; sha256="1ibwywgbxnxcb3z2kl2bgh7fz512nhgy2zcdym67asp76c6rkqg6"; depends=[]; broken = true; }; PCA4TS = derive2 { name="PCA4TS"; version="0.1"; sha256="1qi9nlaf5181afrdvddh10a9vxyhry102n3dhai86im8yz4if9y6"; depends=[tseries]; broken = true; }; PEMM = derive2 { name="PEMM"; version="1.0"; sha256="18dd9hsbdrnhrrff7gpdqrw2jv44j8lg0v3lkcdpbd4pppcaq84h"; depends=[]; broken = true; }; PIGShift = derive2 { name="PIGShift"; version="1.0.1"; sha256="115dnsh4b1rxx1d2kc8x3vl5366h5f0i6gg8l1w3v0f8309qigis"; depends=[ape mvtnorm]; broken = true; }; @@ -20579,7 +20877,6 @@ in with self; { PP3 = derive2 { name="PP3"; version="1.2"; sha256="1g36al9w1rxyhfzbvpw9siqq57h2xl0zr94wysz8i0jzqkkqkrvf"; depends=[]; broken = true; }; PROTOLIDAR = derive2 { name="PROTOLIDAR"; version="0.1"; sha256="0bz3071b0wlcvh40vl3dyiiixk5avsj6kjjnvlvx264i5g08rij4"; depends=[]; broken = true; }; PSIMEX = derive2 { name="PSIMEX"; version="1.1"; sha256="0cndzasvg4y49incyd9nfz8y3z88ywbc7xk0zzjir665pv2xn23b"; depends=[knitr MCMCglmm pedigree plotrix]; broken = true; }; - PUlasso = derive2 { name="PUlasso"; version="3.2.4"; sha256="0mcmya0a5wzmssq05vpmkx9icfrq49kc0dc9ri3d9kx4w0sabffh"; depends=[doParallel foreach ggplot2 Matrix Rcpp RcppEigen]; broken = true; }; PWD = derive2 { name="PWD"; version="1.0"; sha256="0ksr3biaqd4p5a4lv28i4cwk1fn9822ndq2161mgvc1c344p06fj"; depends=[Rcpp RcppArmadillo]; broken = true; }; PWFSLSmoke = derive2 { name="PWFSLSmoke"; version="1.2.117"; sha256="0140j2bg6mqxsg86ndq3c0ls1kdvd33r2qrwih2cjgmnfq31adkj"; depends=[cluster curl dplyr dygraphs geosphere ggmap glue httr jsonlite leaflet lubridate magrittr mapproj maps maptools MazamaCoreUtils MazamaSpatialUtils openair png purrr raster RColorBrewer readr reshape2 rgdal RgoogleMaps rlang sf slippymath sp stringr tibble tidyr xts]; broken = true; }; PabonLasso = derive2 { name="PabonLasso"; version="1.0"; sha256="158xg9i13nqy1bnpch8r6a7yas01hsdidmcypgccmyh7d7l52mr1"; depends=[]; broken = true; }; @@ -20608,6 +20905,7 @@ in with self; { PredictiveRegression = derive2 { name="PredictiveRegression"; version="0.1-4"; sha256="15vkisj3q4hinc3d537s8inhj3wk62q67qhy050xmp9j563ainmd"; depends=[]; broken = true; }; PriorCD = derive2 { name="PriorCD"; version="0.1.0"; sha256="1mb50w2i8sfxjzqd5xnfysn3jnzkkyv6l8algxnp0xpyhcq41pfs"; depends=[dplyr igraph ROCR visNetwork]; broken = true; }; ProFit = derive2 { name="ProFit"; version="1.3.3"; sha256="0jrw0v7dg5mf4zxg7pqybh9qzsiqb3nnz8g5qlc4iz73mhr9gm2b"; depends=[celestial checkmate cubature FITSio LaplacesDemon magicaxis RColorBrewer]; broken = true; }; + ProFound = derive2 { name="ProFound"; version="1.14.1"; sha256="1p2mdy0z5p7as1x6vc572wjcl6f0acwgpvb39rmk2273kb1ldwz5"; depends=[celestial data_table FITSio foreach magicaxis RColorBrewer Rcpp]; broken = true; }; ProbReco = derive2 { name="ProbReco"; version="0.1.2"; sha256="1f56r0w3rxwdyiq7r18mm8a5j80p3dwcnphgxyy6h5binzdwyfgx"; depends=[BH mvtnorm purrr Rcpp RcppEigen RcppParallel Rdpack StanHeaders]; broken = true; }; PropensitySub = derive2 { name="PropensitySub"; version="0.2.0"; sha256="0cx8f3pcn37vrk1d3jbsnpkcdd1pf8xi4v7si4ii4rkxr2iszahd"; depends=[dplyr ggplot2 gridExtra gtable Matching nnet plyr pROC rlang scales survival survminer]; broken = true; }; PsumtSim = derive2 { name="PsumtSim"; version="0.4"; sha256="0079kb1bgsxs4cwmn33rbbk2jgq39rdjfgz9k9hc64iyzz0i6na3"; depends=[boot EffectsRelBaseline]; broken = true; }; @@ -20643,6 +20941,7 @@ in with self; { RDFTensor = derive2 { name="RDFTensor"; version="1.3"; sha256="1kfhhn0lb1r61bkgxn7rv1smgk8b7vxbc8y97hdmg5argiywc65i"; depends=[doParallel foreach Matrix pracma]; broken = true; }; RDIDQ = derive2 { name="RDIDQ"; version="1.0"; sha256="09gincmxv20srh4h82ld1ifwncaibic9b30i56zhy0w35353pxm2"; depends=[]; broken = true; }; RDSTK = derive2 { name="RDSTK"; version="1.1"; sha256="07vfhsyah8vpvgfxfnmp5py1pxf4vvfzy8jk7zp1x2gl6dz2g7hq"; depends=[plyr RCurl rjson]; broken = true; }; + RDataCanvas = derive2 { name="RDataCanvas"; version="0.1"; sha256="1aw19lmdphxwva5cs3f4fb8hllirzfkk48nqdgrarz32l11y5z5j"; depends=[jsonlite]; broken = true; }; REREFACT = derive2 { name="REREFACT"; version="1.0"; sha256="0nggva4qfqlcs58df3sgiigw0z75l5kg8c1yh0k5qsvjnhiq19vn"; depends=[combinat gdata Matrix psych]; broken = true; }; REST = derive2 { name="REST"; version="1.0.1"; sha256="16v89z7p9qkg7bsypf9vkrnbmb2n7gw3fqnfzbyxwj496wzxdv1x"; depends=[Rcmdr]; broken = true; }; RFGLS = derive2 { name="RFGLS"; version="1.1"; sha256="13ggxj74h5b2hfhjyc50ndxznkvlg18j80m78hkzwh25d3948fsk"; depends=[bdsmatrix Matrix]; broken = true; }; @@ -20654,7 +20953,6 @@ in with self; { RGoogleAnalytics = derive2 { name="RGoogleAnalytics"; version="0.1.6"; sha256="05wbcdksx5g6y7x4r1pvc9is3afxbpdxdbmc6b4jhn46rg4228z4"; depends=[digest httr lubridate]; broken = true; }; RGtk2 = derive2 { name="RGtk2"; version="2.20.36.2"; sha256="1m3a3h3yxmr2qpcdyxrwxrdplvhb4rprvd8cnmfwk3zkazd69f9n"; depends=[]; broken = true; }; RHT = derive2 { name="RHT"; version="1.0"; sha256="1gxf8nhj3y92h8al7l3fxa45wc568kb3cykrbdjlsy2zjacf7fcc"; depends=[]; broken = true; }; - RI2by2 = derive2 { name="RI2by2"; version="1.3"; sha256="0smc0fb9anq5ih9zx2slfbqyx02njm0hc7g22gpfggskmxf2l509"; depends=[gtools Rcpp]; broken = true; }; RKEELjars = derive2 { name="RKEELjars"; version="1.0.20"; sha256="1wsxn9l7xdmm9q3z9lbbkdcnwsfmcrayg08m4mkbwynii5z9x548"; depends=[downloader]; broken = true; }; RM2 = derive2 { name="RM2"; version="0.0"; sha256="1v57nhwg8jrpv4zi22fhrphw0p0haynq13pg9k992sb0c72dx70a"; depends=[msm]; broken = true; }; RNAstructureModuleMiner = derive2 { name="RNAstructureModuleMiner"; version="0.1.0"; sha256="026r1h4z1jdfww0ay9iixa77ax6b19pgp589bbn77xg1vwjjlbsk"; depends=[RRNA]; broken = true; }; @@ -20665,6 +20963,7 @@ in with self; { ROP = derive2 { name="ROP"; version="1.0"; sha256="12gh83r3hp1qdmw3p5rr1wfhsh90pirx67q456gl9ai6zgd8nkq8"; depends=[ROCR]; broken = true; }; RPCLR = derive2 { name="RPCLR"; version="1.0"; sha256="03kpyszsjb656lfwx2yszv0a9ygxs1x1dla6mpkhcnqw00684fab"; depends=[MASS survival]; broken = true; }; RPS = derive2 { name="RPS"; version="1.0.1"; sha256="16n6wknw2m56kwi6rswgxjwjqblhaz5gyw94f96a7l6navqnvlp4"; depends=[ape geomorph Gmedian igraph MASS matlab]; broken = true; }; + RSAlgaeR = derive2 { name="RSAlgaeR"; version="1.0.0"; sha256="1hp0v2vkj9ixiv541d53kyl0ph3jsdc5w98r81gv5ck5ixrp6bxp"; depends=[cvTools ggplot2 lubridate mblm plyr]; broken = true; }; RSCABS = derive2 { name="RSCABS"; version="0.9.5"; sha256="193wbf1v18xv098i6abpglb239788d9gjzqbn8p3aai0la6y1pk3"; depends=[gWidgets2 gWidgets2RGtk2 R2HTML RGtk2]; broken = true; }; RSIP = derive2 { name="RSIP"; version="1.0.0"; sha256="1yddqbnz0av69l53y83m7rnznc42qz66fc3qrispzaajs7p9n8d7"; depends=[ncdf4 raster rasterVis rgdal sp]; broken = true; }; RSPS = derive2 { name="RSPS"; version="1.0"; sha256="0ynxhgnxsf27qm8r5d9lyd59zksnc3kvx35hy25vff8j3bg7fqgi"; depends=[gridExtra lattice plyr]; broken = true; }; @@ -20677,6 +20976,7 @@ in with self; { RTConnect = derive2 { name="RTConnect"; version="0.1.4"; sha256="1000jmmqzyhl6vh1ii75jdh88s9inaz52gvfwcin2k2zr7bi91ba"; depends=[]; broken = true; }; RTOMO = derive2 { name="RTOMO"; version="1.1-6"; sha256="03jb96ahzgp662vj2v65giv8ss61vad5w26kvq8hg9q06z879jza"; depends=[GEOmap RPMG RSEIS splancs]; broken = true; }; RTextureMetrics = derive2 { name="RTextureMetrics"; version="1.1"; sha256="0d0mvpmcpd62cvqlajrqp32lnvpflyf9bqvdzly2v8v1kb8274fc"; depends=[]; broken = true; }; + RUVIIIC = derive2 { name="RUVIIIC"; version="1.0.19"; sha256="1px87p4nmdgkxwarsqyc91kmwr13dy16c1qqqc86qlwm2w46smf6"; depends=[progress Rcpp RcppEigen RcppProgress RSpectra]; broken = true; }; RVFam = derive2 { name="RVFam"; version="1.1"; sha256="0gw8rgq11zndnqmay6y3y5rmmljvwhxzm2pqa90vs5413dnchq92"; depends=[coxme kinship2 lme4 MASS Matrix survival]; broken = true; }; RVideoPoker = derive2 { name="RVideoPoker"; version="0.3"; sha256="06s4dlw0pw8rcq5b31xxqdpdk396rf27mai2vpvmn585vbm1ib7a"; depends=[pixmap rpanel tkrplot]; broken = true; }; RVowpalWabbit = derive2 { name="RVowpalWabbit"; version="0.0.18"; sha256="13c6d8n0v44xcvd46id48qgih9bw3hpnp6k4byvln9qjd9ji3pgy"; depends=[Rcpp]; broken = true; }; @@ -20695,6 +20995,7 @@ in with self; { Rbgs = derive2 { name="Rbgs"; version="0.2"; sha256="1q0dnbcpgx7x9klr6z33z6g2p9p8mrmhnsqjy6qw15ch720rrgn3"; depends=[imager magrittr rJava]; broken = true; }; Rbitcoin = derive2 { name="Rbitcoin"; version="0.9.2"; sha256="0ndq4kg1jq6h0jxwhpdp8sw1n5shg53lwa1x0bi7rifmy0gnh66f"; depends=[data_table digest RCurl RJSONIO]; broken = true; }; RcellData = derive2 { name="RcellData"; version="1.3-2"; sha256="1zzkgpj2pc42xzz5pspyj981a04gjpna4br3lxna255366ijgz4l"; depends=[]; broken = true; }; + Rcgmin = derive2 { name="Rcgmin"; version="2022-4.30"; sha256="04dr5w8ss004fk0w814x4hb78i7l3h1q5r00pjps43cpzgkvi116"; depends=[optextras]; broken = true; }; RcmdrPlugin_FuzzyClust = derive2 { name="RcmdrPlugin.FuzzyClust"; version="1.1"; sha256="1lg6k3h4n45s6wjkl3ycwfngfr2i6mkhirifhbazsvv297bg0iba"; depends=[clue doParallel foreach ggplot2 iterators MASS Rcmdr reshape2 tcltk2 tkrplot]; broken = true; }; RcmdrPlugin_IPSUR = derive2 { name="RcmdrPlugin.IPSUR"; version="0.2-1.1"; sha256="0dbdsxdxhxm79cq7hi0rh8qphan73521lmivcnb4ca8g6ha2y32v"; depends=[Rcmdr]; broken = true; }; RcmdrPlugin_SLC = derive2 { name="RcmdrPlugin.SLC"; version="0.2"; sha256="1nwpzmgfla1y05dxf81w0wmvvmvcq5jn5k8phlq30920ia7ybs8g"; depends=[Rcmdr SLC]; broken = true; }; @@ -20705,7 +21006,6 @@ in with self; { RcmdrPlugin_steepness = derive2 { name="RcmdrPlugin.steepness"; version="0.3-2"; sha256="1na98sl42896y7yklaj07sn88lj6p6ik7gwy9ffaxzicqaa8plgf"; depends=[Rcmdr steepness]; broken = true; }; RcmdrPlugin_sutteForecastR = derive2 { name="RcmdrPlugin.sutteForecastR"; version="1.0.0"; sha256="1np42kizkk572vharki84ka34lr7bdlckn4227bnq2l37c0zsq5y"; depends=[Rcmdr sutteForecastR]; broken = true; }; Rcolombos = derive2 { name="Rcolombos"; version="2.0.2"; sha256="0l92icjqqm5fxafqwd09lnmv5x6kvjdg8cphlm37q86nslwr5rkk"; depends=[httr]; broken = true; }; - RcppCGAL = derive2 { name="RcppCGAL"; version="5.5.3"; sha256="0l6kr113y97j3ap6rrkvm6yqz8czyvjax4pswbcv78xf77zyq69c"; depends=[curl gh Rcpp]; broken = true; }; RcppDL = derive2 { name="RcppDL"; version="0.0.5"; sha256="1gii00bna6k9byaax7gsx42dv1jjnkrp4clbmdq59ybq3vkvw8z2"; depends=[Rcpp]; broken = true; }; RcppEigenAD = derive2 { name="RcppEigenAD"; version="1.0.0"; sha256="18zm9hsfqwiicxsdm87ix3qc261ljxxn2s736p6aayx82b6vwkz6"; depends=[BH functional memoise Rcpp RcppEigen Rdpack readr]; broken = true; }; RcppFaddeeva = derive2 { name="RcppFaddeeva"; version="0.1.0"; sha256="1rah18sdfmbcxy83i7vc9scrwyr34kn9xljkv9pa31js68gn2jrl"; depends=[knitr Rcpp]; broken = true; }; @@ -20744,11 +21044,11 @@ in with self; { Rpvt = derive2 { name="Rpvt"; version="0.1.1"; sha256="0ggd6ikp2s9z4086y8w3qzb9jcyyqpby41p3ayjwam94skh154mf"; depends=[Rcpp RcppArmadillo Rdpack]; broken = true; }; Rquake = derive2 { name="Rquake"; version="2.4-4"; sha256="1929qxqbb6s316zb9x2q1kwz2pvwpvqr1w6iw8vm5vijyf1nvv30"; depends=[GEOmap MBA minpack_lm RPMG RSEIS]; broken = true; }; Rrdrand = derive2 { name="Rrdrand"; version="0.1-16"; sha256="0j9yyvq8r1cgwj3kw1ak6hyazr67f2q0c1m651wdm0wcvm1ajx7f"; depends=[]; broken = true; }; - RsqMed = derive2 { name="RsqMed"; version="0.2.1.0"; sha256="0answ66a9gi38lw48xjvb0f2cpifxi9c5iwlghwh26baffqp9m64"; depends=[GMMAT SIS]; broken = true; }; RstoxData = derive2 { name="RstoxData"; version="1.2.1"; sha256="0xfznv0nl7xymlxbd7g0lbxqw1zcyc9mm4mx0nwpw896vz7dvyvw"; depends=[data_table Rcpp stringi units xml2 xslt]; broken = true; }; RtD3 = derive2 { name="RtD3"; version="0.0.1"; sha256="0zbm9pf1z8xl99aj64xy8q3hly98c2rzy34fzkbjyndysvxf9032"; depends=[data_table geojsonsf htmlwidgets jsonlite purrr]; broken = true; }; RtutoR = derive2 { name="RtutoR"; version="1.2"; sha256="19wmi30b5i6zj673d76gxl6j0k3ppfyl5fqrcs0dwmmadrrvbajq"; depends=[colourpicker devtools dplyr DT FSelector ggplot2 ggthemes officer plotly rlang rmarkdown shiny shinyBS shinydashboard shinyjs tidyr]; broken = true; }; Runiversal = derive2 { name="Runiversal"; version="1.0.2"; sha256="0667mspsjydmxi848c6wsf14gz72bmdj9b3lilma92b7fhqnv7ai"; depends=[]; broken = true; }; + Rvmmin = derive2 { name="Rvmmin"; version="2018-4.17.1"; sha256="0kl1h4mlvb1bngb40r3dhrjkpnh3lsqddis65hbjzm2pzz20l02m"; depends=[optextras]; broken = true; }; Rvoterdistance = derive2 { name="Rvoterdistance"; version="1.1"; sha256="16il36hkq1j6gyl5d8bx5khiiv6fy2m8vkhwiaaiqsliw2sspy4j"; depends=[Rcpp]; broken = true; }; Rwinsteps = derive2 { name="Rwinsteps"; version="1.0-1.1"; sha256="0kaxhaa65k1hkhl4kqfxyyk6v967xncrdr5hy8b808zlbqriankc"; depends=[]; broken = true; }; Rwordseg = derive2 { name="Rwordseg"; version="0.3-2"; sha256="10jhfalh45rrcm76hwz4b5yl408ndx2wkr0i3q1avx6z6i45d8s6"; depends=[HMM tmcn]; broken = true; }; @@ -20779,9 +21079,10 @@ in with self; { SETPath = derive2 { name="SETPath"; version="1.0"; sha256="1dpgmki0dhph13h1fd3mbf308746wccgfz5g5gdm7bwbjnmjzd98"; depends=[]; broken = true; }; SEchart = derive2 { name="SEchart"; version="0.1"; sha256="19gqcd6xzwg37nzc67p88ip4i0v2f59ds85xfw9qq8lybvdm76k2"; depends=[JM]; broken = true; }; SHIP = derive2 { name="SHIP"; version="1.0.2"; sha256="0b83cclibdz1r7sz968nmca4najwgps9wrdlsh4gxrl7fq40k4ln"; depends=[]; broken = true; }; - SID = derive2 { name="SID"; version="1.0"; sha256="1446zy4rqbw0lpyhnhyd06dzv238dxpdxgmsk34hqv7g3j7q5h1w"; depends=[igraph Matrix pcalg RBGL]; broken = true; }; SII = derive2 { name="SII"; version="1.0.3.1"; sha256="1xvk04b7725ksfd7h4p7px5zanbf6s7xlmjpb7w0nvbi6km2f7ri"; depends=[]; broken = true; }; SIN = derive2 { name="SIN"; version="0.6"; sha256="0vq80m3vl8spdnlkwvwy0gk3ziyybqzjp3scnfdcpn942ds7sgg9"; depends=[]; broken = true; }; + SIRmcmc = derive2 { name="SIRmcmc"; version="1.1"; sha256="1dqcp0mrddw0zl3zx0z077vd1x0p3q1j5cv8hxln9blmiv1lggx1"; depends=[Rcpp]; broken = true; }; + SIfEK = derive2 { name="SIfEK"; version="0.1.0"; sha256="037ps6yfy7w6i8vm0b78c8w9kdmw312dl5nc2qz86rfk8kjg7w27"; depends=[MASS numDeriv ramcmc smfsb]; broken = true; }; SK = derive2 { name="SK"; version="1.1"; sha256="19yg7yc2k4zz29bh42lw2jpjvkdj33f26xkfs8vz8lpp98yjf2vx"; depends=[FitAR GD MASS RColorBrewer rgeos rtop sp]; broken = true; }; SLC = derive2 { name="SLC"; version="0.3"; sha256="0l0y1sjj0glsb7vwla99ijclcgaq2y85bgz1wqm348n4shsmm2rs"; depends=[]; broken = true; }; SLICER = derive2 { name="SLICER"; version="0.2.0"; sha256="10i0hfl6js26n8xwk9pldzm9vv7hmii6gzj04lhqy0g3njds25kp"; depends=[alphahull igraph]; broken = true; }; @@ -20800,6 +21101,7 @@ in with self; { SPODT = derive2 { name="SPODT"; version="0.9-1"; sha256="01yq429a4s63855bwpn2mqjj2k3cz4187kfpi7n7qqdpdvmxz109"; depends=[rgdal sp tree]; broken = true; }; SPQR = derive2 { name="SPQR"; version="0.1.0"; sha256="1hsz9pbn428vbiwq5chs9j9hpsrsk1aqzjhgqwc5dybqi4x4qb8v"; depends=[coro ggplot2 interp loo progress progressr RColorBrewer Rcpp RcppArmadillo splines2 torch yaImpute]; broken = true; }; SPRT = derive2 { name="SPRT"; version="1.0"; sha256="1r4pfqh8k5avi8qgpk5x1cy8lmkn341yvjvd2r7wqwb3mr242r0v"; depends=[]; broken = true; }; + SPUTNIK = derive2 { name="SPUTNIK"; version="1.4.1"; sha256="0446qh43q09l7kvcgsp4gkp7p9v9448xx0xwngxgghnnmwh8fa4p"; depends=[doSNOW e1071 edgeR foreach ggplot2 imager infotheo irlba reshape spatstat_explore spatstat_geom viridis]; broken = true; }; SQB = derive2 { name="SQB"; version="0.4"; sha256="12ii8xlwd2r77bj76j7l43898ras25z3plhhv106jaklhpcnk23m"; depends=[caret nnet pls rpart]; broken = true; }; SQDA = derive2 { name="SQDA"; version="1.0"; sha256="0nfimk625wb64010r5r7hzr64jfwgc6rbn13wvrpn0jgayji87h6"; depends=[limma mvtnorm PDSCE]; broken = true; }; SSDL = derive2 { name="SSDL"; version="1.1"; sha256="0m05m00qsjyc69kix124z6nrplqv1yaaag7qxpiizbn664h9hmjb"; depends=[bigstatsr chickn doParallel doRNG foreach glmnet pracma Rcpp RcppArmadillo RcppParallel Rdpack reshape2 rmio]; broken = true; }; @@ -20811,11 +21113,12 @@ in with self; { SUE = derive2 { name="SUE"; version="1.0"; sha256="0akv724s84v2zixvwywj1ydfnfvcjnaabv6gm0601nsrh6ij1mi6"; depends=[]; broken = true; }; SVMMaj = derive2 { name="SVMMaj"; version="0.2.9.1"; sha256="08f9sndcjgmmxl3zlbq86d8z0dbciv0ab1v9zx80svka7ckfv9z3"; depends=[dplyr ggplot2 gridExtra kernlab reshape2 scales]; broken = true; }; SVMMatch = derive2 { name="SVMMatch"; version="1.1"; sha256="1ykwrhlid4hs466xh3kv6y2qdhgk0jiglg0l3zwk5qlni6p26zc9"; depends=[Rcpp RcppArmadillo]; broken = true; }; + SWMPrExtension = derive2 { name="SWMPrExtension"; version="2.2.4.2"; sha256="0vvmpghwrd66y92d9mb93i38siyd0jx6vlafbir1inkmpcpa62a0"; depends=[broom dplyr EnvStats flextable ggimage ggplot2 ggthemes lubridate magrittr officer purrr RColorBrewer rlang scales sf SWMPr tidyr tidyselect]; broken = true; }; + SWTools = derive2 { name="SWTools"; version="1.0"; sha256="0mdkbzph4q989wi66xawkxca0zvpnnisk5wxbb91ylb05r84qpzf"; depends=[dplyr forcats ggmap ggplot2 httr jsonlite lubridate magrittr readr reshape2 rlang rmarkdown segmented sf sp stringr tibble tidyr zoo]; broken = true; }; Sample_Size = derive2 { name="Sample.Size"; version="1.0"; sha256="1vfnb2gg3rax4sxd81xqznfvh300nv45nn7zjsyrdjyg1n3ym7nw"; depends=[]; broken = true; }; SamplerCompare = derive2 { name="SamplerCompare"; version="1.3.2"; sha256="09j06ycr749dbr6xbn5pxw7rp1p3cri40z38hf1kp5kvjxkkpy2w"; depends=[mvtnorm]; broken = true; }; ScoreGGUM = derive2 { name="ScoreGGUM"; version="1.0"; sha256="0f7sjfr3a8b8y1n9lrwyiyyljls3rbz84d9s93psi2fnmjj0kvgw"; depends=[]; broken = true; }; SecKW = derive2 { name="SecKW"; version="0.2"; sha256="13x9l6ncx8qszkcr7dpfzrk4zqj4w8z5lwd394437vl4xf1xv0k6"; depends=[fdrtool pracma]; broken = true; }; - SeedMatchR = derive2 { name="SeedMatchR"; version="1.0.1"; sha256="0azrlma0p1g342yqyxb1wj9shc0sy2p0ml555h554apasxf020v6"; depends=[AnnotationHub Biostrings cowplot DESeq2 dplyr GenomeInfoDb GenomicFeatures ggmsa ggplot2 lifecycle msa stringr testit twosamples]; broken = true; }; SeerMapper = derive2 { name="SeerMapper"; version="1.2.5"; sha256="1sjg0a5mvyvgzwpmbr3avm76cb9a45qdwvic665v4hhhsmf2x8xk"; depends=[maptools RColorBrewer rgdal SeerMapper2010East SeerMapper2010Regs SeerMapper2010West SeerMapperEast SeerMapperRegs SeerMapperWest sp stringr]; broken = true; }; SeerMapper2010East = derive2 { name="SeerMapper2010East"; version="1.2.5"; sha256="0v3cslshg5qjmjnxw4xprdnqwdwnyamyljdyi9nwixjc2nm9inbx"; depends=[sp]; broken = true; }; SeerMapper2010Regs = derive2 { name="SeerMapper2010Regs"; version="1.2.5"; sha256="1v8vnvkmh3wqinanm5aap3vw36zriqh8xw2im2ncw0rdhf9ccbl5"; depends=[sp]; broken = true; }; @@ -20828,10 +21131,13 @@ in with self; { ShinyImage = derive2 { name="ShinyImage"; version="0.1.0"; sha256="0nhsaq6i9lr8gqpdkahw3qr0c0cb0qwc0nqpk1ism21l6zg6ahc9"; depends=[EBImage R6 shiny shinyjs]; broken = true; }; SimEvolEnzCons = derive2 { name="SimEvolEnzCons"; version="2.0.0"; sha256="0h3j8lp1s3zqb9qgy16gd0rdlbr2g1jqrc4a19zhmix2kygs5012"; depends=[ade4 RColorBrewer rgl scatterplot3d]; broken = true; }; SimPhe = derive2 { name="SimPhe"; version="0.2.0"; sha256="01kzypahw41jk8s2c92h0k9w32yaicis07wb6k8qlqcmv0zj8xry"; depends=[]; broken = true; }; + SimRAD = derive2 { name="SimRAD"; version="0.96"; sha256="0ivvd3k04v1akbblxcjhlyc315z3ig7wjs0g3b37lvlfp54ppbrg"; depends=[Biostrings ShortRead zlibbioc]; broken = true; }; SimSCRPiecewise = derive2 { name="SimSCRPiecewise"; version="0.1.1"; sha256="0mhlx9m5db8a40wf275qh59345676m8bpjjmyx1v22f6m9p3b2n4"; depends=[]; broken = true; }; SimpleTable = derive2 { name="SimpleTable"; version="0.1-2"; sha256="1rkybrp7zlb7cj37799npss1ldic0yf519q5l7a6ikal4yl1afyb"; depends=[hdrcde locfit MCMCpack]; broken = true; }; Simpsons = derive2 { name="Simpsons"; version="0.1.0"; sha256="1pm6wga1yxc35zgz72plzq23d3l4bbzfdvhszdxmkn1pkk64h8ms"; depends=[mclust]; broken = true; }; SinIW = derive2 { name="SinIW"; version="0.2"; sha256="1z7rcjy0i09a9hjpjj1x8i46lv042l20lvb6b0pnsky2sx3v78pd"; depends=[fdrtool pracma]; broken = true; }; + SiteAdapt = derive2 { name="SiteAdapt"; version="1.1.0"; sha256="1k79j29d92a8m578xj61iavljikksdmjr2vlzwmdvxpa6rp1i2ff"; depends=[ggplot2 ggpubr glmulti hyfo RColorBrewer solaR]; broken = true; }; + SkeweDF = derive2 { name="SkeweDF"; version="0.1.0"; sha256="11i6zbjhkcrr6g848sms21l1ixk401vd50cia74j78d4nvl8d8zc"; depends=[dplyr matrixStats optimr purrr Rcpp stringr zipfR]; broken = true; }; Sky = derive2 { name="Sky"; version="1.0"; sha256="02vjdggvanzsjx7ihxskapp5d5dlyalj02122wmarj8qf1ha1i2m"; depends=[EBImage]; broken = true; }; SmithWilsonYieldCurve = derive2 { name="SmithWilsonYieldCurve"; version="1.0.1"; sha256="0qvhd1dn2wm9gzyp6k7iq057xqpkngkb4cfmvmjqmf0vhysp371w"; depends=[]; broken = true; }; SmoothHazard = derive2 { name="SmoothHazard"; version="2023.06.27"; sha256="1jigxihw7mw0ivbarjic5qjx4ky450ys8db4j0i5i4z6sv9nfqix"; depends=[lava mvtnorm prodlim]; broken = true; }; @@ -20858,6 +21164,7 @@ in with self; { StatMeasures = derive2 { name="StatMeasures"; version="1.0"; sha256="1bnbz803xx8kqhy1cx545b35si6f10za0mp5z82qfvd4kv9a9izz"; depends=[data_table]; broken = true; }; Stem = derive2 { name="Stem"; version="1.0"; sha256="1fr02mi5qyxbqavdh2hg8ggw4nfjh3vs7g0vh834h6y0v53l71r5"; depends=[MASS mvtnorm]; broken = true; }; SubCultCon = derive2 { name="SubCultCon"; version="1.0"; sha256="08q6k4nsv3gl5qk87s87smdg047yc2a4i7kg0fp08i7q7h62jkvz"; depends=[]; broken = true; }; + SubgrPlots = derive2 { name="SubgrPlots"; version="0.1.3"; sha256="1bi5zndkpgvyk563i0jdfrw73kkpa6zi3yx922dv90w6bdb9kvl2"; depends=[alluvial circlize colorspace diagram dplyr ggplot2 ggrepel gridBase gridExtra plyr polyclip scales shape sp survival survRM2 UpSetR VennDiagram]; broken = true; }; SubpathwayGMir = derive2 { name="SubpathwayGMir"; version="1.0"; sha256="1rw94idhbnaszr2xv1wgnjcxlnxkml912pvmqh2a1nqpwca5mscy"; depends=[igraph XML]; broken = true; }; Sunder = derive2 { name="Sunder"; version="0.0.4"; sha256="1na41nnscyc4v1qbwzfgqk503r39xxbi6f446pscrz3v0v121f1a"; depends=[mnormt]; broken = true; }; SunterSampling = derive2 { name="SunterSampling"; version="1.0.1"; sha256="0qfld3j8xlpgp7c58zqw6gzm38m4d740lvdj5vmcflfcc6ja98sf"; depends=[]; broken = true; }; @@ -20871,6 +21178,7 @@ in with self; { SynthCast = derive2 { name="SynthCast"; version="0.2.1"; sha256="0gln7x1vlfdnr0qaqgagr93r484hv3dp65n24b3wl3p02msz9bgn"; depends=[dplyr forcats Synth tidyr]; broken = true; }; TBSSurvival = derive2 { name="TBSSurvival"; version="1.3"; sha256="1r87qvnlvc18i12yi25lfpdb8b5p33fywi38hs2xp1y2vbvz5s9b"; depends=[BMS coda mcmc normalp R_utils Rsolnp survival]; broken = true; }; TDAmapper = derive2 { name="TDAmapper"; version="1.0"; sha256="0cxgr2888v8azgdr3sg4vlcdyivkrxkk6dsp1ahv4frrwvg2z09k"; depends=[]; broken = true; }; + TDApplied = derive2 { name="TDApplied"; version="3.0.0"; sha256="0k9pnpg5k9jgqhgaajp57nl42hirv5v3a2q5jnqjcgdj5cnkfnwf"; depends=[clue doParallel foreach iterators kernlab parallelly Rcpp rdist]; broken = true; }; TDD = derive2 { name="TDD"; version="0.4"; sha256="193y8brybkjsajrbnlx1sdnw1wyyn9rhlm5wvp4aamqhvi8z13vn"; depends=[pracma RSEIS signal]; broken = true; }; TDMR = derive2 { name="TDMR"; version="2.2"; sha256="19ljgj5iy41m7rrawzkxkln7acydssk8zm05k3sfb483s8zygwiq"; depends=[adabag SPOT testit twiddler]; broken = true; }; TERAplusB = derive2 { name="TERAplusB"; version="1.0"; sha256="0mshx615awcf2arm39mgw2gzgpyn7a3f767484g7z4nqqlikwpgc"; depends=[]; broken = true; }; @@ -20896,6 +21204,7 @@ in with self; { TanB = derive2 { name="TanB"; version="0.1"; sha256="05y9j1a5nzqfpsw48gix5c4ds1cm80liad9wnwmddhbx4fda6p32"; depends=[fdrtool pracma]; broken = true; }; TargomoR = derive2 { name="TargomoR"; version="0.2.0"; sha256="0dzlqv8v36cm5b9hc9am4351nigknq7vr0mki9kzk2979c18if6b"; depends=[geojsonsf httr jsonlite leaflet magrittr sf tibble xml2]; broken = true; }; TauP_R = derive2 { name="TauP.R"; version="1.5"; sha256="02vk9rj8yx4n2pihgk93bs2f9wkpkyfqm2kp7ixj4wpa29a0iq6v"; depends=[]; broken = true; }; + Taxonstand = derive2 { name="Taxonstand"; version="2.4"; sha256="0zph4618bwjfvx41ap9d2534kknbni216y90nmcvaniskw4ixm7d"; depends=[pbapply]; broken = true; }; Thinknum = derive2 { name="Thinknum"; version="1.3.0"; sha256="0j48vgr4wsc2chm95aprq0xm0dk720xk5zmiijxasg92sfp0va6n"; depends=[RCurl RJSONIO]; broken = true; }; TickExec = derive2 { name="TickExec"; version="1.1"; sha256="0v0m0wi49yw0ply19vnirl2zwnk61sxalx24l8cadvkssgs13509"; depends=[]; broken = true; }; TiddlyWikiR = derive2 { name="TiddlyWikiR"; version="1.0.1"; sha256="0vwwjdmfc8c0y2gfa8gls1mzvp29y39c9sxryrgpk253jj9px1kr"; depends=[]; broken = true; }; @@ -20944,6 +21253,7 @@ in with self; { WLinfer = derive2 { name="WLinfer"; version="1.2.0"; sha256="1d4x3w5mamwk7binjr45s62zd7lvxw3abadw22084p10kw7lwfk7"; depends=[bbmle boot cubature goftest LindleyR nleqslv pracma]; broken = true; }; WMDB = derive2 { name="WMDB"; version="1.0"; sha256="10wdjy3g2qg975yf1dhy09w9b8rs3w6iszhbzqx9igfqvi8isrr1"; depends=[]; broken = true; }; WPC = derive2 { name="WPC"; version="1.0"; sha256="0li502hwa4n945yfnilslyvl12ls66kazbfmxb4kkjbaf500mjp9"; depends=[msm survival]; broken = true; }; + WWR = derive2 { name="WWR"; version="1.2.2"; sha256="0ia1dd12r1l08s9nhgvk55jmqwv58jawm25gd2ni6wpa3mcmq02g"; depends=[inline]; broken = true; }; Watersheds = derive2 { name="Watersheds"; version="1.1"; sha256="1gn52nl0rr29pqq94gjasc4fi1kjxlrpjdkgm2x56j5jbd162drk"; depends=[lattice maptools rgeos sp splancs]; broken = true; }; WikipediaR = derive2 { name="WikipediaR"; version="1.1"; sha256="0fxk247jb82g0f3nmwraa4kvdpjxy5s4dcyzj9vkjw2lq8by3l0h"; depends=[httr XML]; broken = true; }; WilcoxCV = derive2 { name="WilcoxCV"; version="1.0-2"; sha256="1kbb7ikgnlxybmvqrbn4cd8xnqrkwipk4xd6yja1xsi39a109xzl"; depends=[]; broken = true; }; @@ -20952,6 +21262,7 @@ in with self; { Xmisc = derive2 { name="Xmisc"; version="0.2.1"; sha256="11gwlcyxhz1p50m68cnqrxmisdk99v8vrsbvyr7k67f0kvsznzs1"; depends=[]; broken = true; }; Yamm = derive2 { name="Yamm"; version="1.3.2"; sha256="1x0214nw4hk1xs2qgz532ff1fydkwkq449l1zdbv088rhxs8c2ch"; depends=[depth interp robustX]; broken = true; }; ZIBBSeqDiscovery = derive2 { name="ZIBBSeqDiscovery"; version="1.0"; sha256="12g9rga9z6318ni6x6q9hdqlgl93y2xn8vf3gc6sm97fz8pliswx"; depends=[mcc]; broken = true; }; + ZIPG = derive2 { name="ZIPG"; version="1.0"; sha256="00dbxywmfkbi7svpnagqy49vfff33j9kychv6x4bpsm9inh8r94a"; depends=[MASS optimr pscl]; broken = true; }; Zelig = derive2 { name="Zelig"; version="5.1.7"; sha256="1x1zcmlhbbzxbb0y91ynz50nfhpki913lnmhcpmlds7drcbbirnk"; depends=[AER Amelia coda dplyr Formula geepack jsonlite MASS MatchIt maxLik MCMCpack quantreg sandwich survey survival VGAM]; broken = true; }; ZipRadius = derive2 { name="ZipRadius"; version="1.0.1"; sha256="00q4a2bsajs5ns4vdm289iaj9mczxjn3ssyrnmg2z4wicr2ljizv"; depends=[dplyr geosphere ggplot2 magrittr rlang testthat]; broken = true; }; aCRM = derive2 { name="aCRM"; version="0.1.1"; sha256="0kzp568hd9c9a9qgniia5s5gv0q5f89xfvvwpzb197gqhs3x092v"; depends=[ada dummies kernelFactory randomForest]; broken = true; }; @@ -20961,13 +21272,15 @@ in with self; { aSPC = derive2 { name="aSPC"; version="0.1.2"; sha256="1q301rw7dax5v58srg4jlcam1qq2igkaj7kg8wlnlml0hsck4c4a"; depends=[energy mvtnorm]; broken = true; }; aaSEA = derive2 { name="aaSEA"; version="1.1.0"; sha256="0him4r8qyp0xssgrmdxjs45yn4d28h5anv4jyxxbbs9phb0m6j3h"; depends=[Bios2cor DT Hmisc magrittr networkD3 plotly seqinr shiny shinydashboard]; broken = true; }; aba = derive2 { name="aba"; version="0.0.9"; sha256="1qnhnbbd8iir686gc48fld62pd4da39flf2djvvif2bxcvwl8y7a"; depends=[broom dplyr generics ggplot2 glue magrittr purrr rlang stringr tibble tidyr]; broken = true; }; + abbyyR = derive2 { name="abbyyR"; version="0.5.5"; sha256="1vldnd3dg89aj6a73nhirirqddbfdrnzhb5m3679i60sark8nk6r"; depends=[curl httr plyr progress readr XML]; broken = true; }; abcADM = derive2 { name="abcADM"; version="1.0"; sha256="0vcabnnnwc0psv9v3rda5aap9s8cq1pjh02zva3ki64hlavf2a10"; depends=[BH Rcpp]; broken = true; }; abcdeFBA = derive2 { name="abcdeFBA"; version="0.4"; sha256="1rxjripy8v6bxi25vdfjnbk24zkmf752qbl73cin6nvnqflwxkx4"; depends=[corrplot lattice rgl Rglpk]; broken = true; }; abf2 = derive2 { name="abf2"; version="0.7-1"; sha256="0d65mc1w4pbiv7xaqzdlw1bfsxf25587rv597hh41vs0j0zlfpxx"; depends=[]; broken = true; }; - accrual = derive2 { name="accrual"; version="1.3"; sha256="11clm9s5c5518nmp6hd6pjnp0s28y92b2i2x0xgj4j5g816p4j3z"; depends=[fgui SMPracticals tcltk2]; broken = true; }; + abn = derive2 { name="abn"; version="3.0.4"; sha256="1qqsm6ldbf6rnzvspcnv87l4mkxccg4divzf6nj7j92jnhyadqia"; depends=[doParallel foreach graph lme4 mclogit nnet Rcpp RcppArmadillo Rgraphviz rjags stringi]; broken = true; }; acmeR = derive2 { name="acmeR"; version="1.1.0"; sha256="000b2hqlhj93958nddw0fqb15ahigs08najv2miivym046x04mf7"; depends=[foreign]; broken = true; }; acrt = derive2 { name="acrt"; version="1.0.1"; sha256="0y9ndcq8ffpfrv7w9rikm4zn68jpsj6baqisq9kp2433xrwzdb6s"; depends=[Rcpp RcppEigen sandwich]; broken = true; }; activityCounts = derive2 { name="activityCounts"; version="0.1.2"; sha256="0zgxr2sk3a8kmygfxx1p5hnrfwdkxx7php6jlrhm8wv6052ck8jz"; depends=[lubridate magrittr seewave signal tibble]; broken = true; }; + activityGCMM = derive2 { name="activityGCMM"; version="1.1.1"; sha256="0r11z61h8fs5dcm3yfr2njbrbh4pv7xlbqx5zngmrknhv407498z"; depends=[circular mclust overlap runjags]; broken = true; }; adass = derive2 { name="adass"; version="1.0.0"; sha256="1g702pg335q9jwgdygb7n364ibad6z27fcd9yfim8gi4fcpjwlkq"; depends=[fda matrixcalc mvtnorm plot3D Rfast SparseM]; broken = true; }; adhoc = derive2 { name="adhoc"; version="1.1"; sha256="0a59fv9glcqh4zzd0887ndrhlcaylja6vay2ifajp8an29gjk1vv"; depends=[ape pegas polynom]; broken = true; }; adoption = derive2 { name="adoption"; version="0.6.4"; sha256="1xjkvj1ys2xmjgswqfsrry27zyqcc9hk9khl0j4s72gcc8az8sz6"; depends=[quadprog RandomFieldsUtils tkrplot]; broken = true; }; @@ -20982,6 +21295,7 @@ in with self; { akmedoids = derive2 { name="akmedoids"; version="1.3.0"; sha256="19d9fh1cygn04riwc7y7lzdncyxki9rzikf9f5m96vp0y687z2ka"; depends=[clusterCrit dplyr ggplot2 Hmisc kml signal]; broken = true; }; alignfigR = derive2 { name="alignfigR"; version="0.1.1"; sha256="0jsj0h7zpzj6ynfydl8qbggm03xx8db769rli7rcx9909xdxabk6"; depends=[ggplot2]; broken = true; }; allhomes = derive2 { name="allhomes"; version="0.3.0"; sha256="1z39qd7hkl2xy0lhf8sgc4rjf4ihi3zbsadchc97h7p7cn9mjbpk"; depends=[dplyr htmltab httr jsonlite magrittr purrr readr rlang stringr tibble tidyr]; broken = true; }; + alookr = derive2 { name="alookr"; version="0.3.7"; sha256="0sdwphzxjh8y4gi3pnsdddra0x085h30m520j8im25z1bhxp0sq7"; depends=[caTools cli dlookr dplyr future ggmosaic ggplot2 glmnet MASS MLmetrics parallelly party purrr randomForest ranger rlang ROCR rpart tibble tidyr tidyselect xgboost]; broken = true; }; amber = derive2 { name="amber"; version="1.0.3"; sha256="0kc7g5rb0wrs1id1k0qay56063gpffwvcll38983b1l3k215mxiv"; depends=[classInt doParallel foreach Hmisc latex2exp ncdf4 raster rgdal rgeos scico sp viridis xtable]; broken = true; }; ambhasGW = derive2 { name="ambhasGW"; version="0.0.2"; sha256="0v517i4whip45pk6bwlwval9pz367pcgzz62b2z22mrwgi6m6bck"; depends=[raster rgdal yaml]; broken = true; }; ambiorix = derive2 { name="ambiorix"; version="2.1.0"; sha256="1831i5fv966cghp5xgq71wqzldlajyjj2p4nkhbw007w2dcn0y21"; depends=[assertthat cli fs glue httpuv jsonlite log promises websocket]; broken = true; }; @@ -21006,6 +21320,15 @@ in with self; { artemis = derive2 { name="artemis"; version="1.1.1"; sha256="1v875xn0mvw7p7jdp6d3hpc4cp8yq2aq0b80rq1c619n9rkjq4ks"; depends=[BH ggplot2 lme4 loo Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; broken = true; }; asVPC = derive2 { name="asVPC"; version="1.0.2"; sha256="07nfwr0lsfpwgfdgzcdn1svw8dnjfni5ga9q77yjd1bj0wf76ci2"; depends=[ggplot2 plyr]; broken = true; }; assemblerr = derive2 { name="assemblerr"; version="0.1.1"; sha256="12kwdp71bgbk67d4038j2bhbw9ja3vqm0m01bzdsrpk4dxh2p3d3"; depends=[cli glue magrittr purrr rlang tidyselect vctrs]; broken = true; }; + assertive = derive2 { name="assertive"; version="0.3-6"; sha256="02palil82idqhhshcdjsfsja9qkqnd0dczqzj5gbccy4hfg1c0y4"; depends=[assertive_base assertive_code assertive_data assertive_data_uk assertive_data_us assertive_datetimes assertive_files assertive_matrices assertive_models assertive_numbers assertive_properties assertive_reflection assertive_sets assertive_strings assertive_types knitr]; broken = true; }; + assertive_code = derive2 { name="assertive.code"; version="0.0-4"; sha256="11qkhbjyxw0njzhcszyc2452518yrn3jr5l4n9jnzq10xms090ig"; depends=[assertive_base assertive_properties assertive_types]; broken = true; }; + assertive_data = derive2 { name="assertive.data"; version="0.0-3"; sha256="00cvg2g36mdl8plrzx40m63qd55742mddqrchwy9n3c7mm4gn02s"; depends=[assertive_base assertive_strings]; broken = true; }; + assertive_data_uk = derive2 { name="assertive.data.uk"; version="0.0-2"; sha256="1fzjvhwp7mwkqqix29khvs6zcrc82n6j4czvzzb473vyjyvdlj5b"; depends=[assertive_base assertive_strings]; broken = true; }; + assertive_data_us = derive2 { name="assertive.data.us"; version="0.0-2"; sha256="1bgspn0sccmp9z7s7djvdvprgxlyc5vrxznp4zfjb79kwvgn83hq"; depends=[assertive_base assertive_strings]; broken = true; }; + assertive_datetimes = derive2 { name="assertive.datetimes"; version="0.0-3"; sha256="151d05z8n6dpl44pqsa1jfi0ijbigr3zfc43xlw53nd8ymi22kh1"; depends=[assertive_base assertive_types]; broken = true; }; + assertive_properties = derive2 { name="assertive.properties"; version="0.0-5"; sha256="1pgljbwwbvbl4kc5c8mcv0qbzq3k6fzi29k88811yml263sm92dn"; depends=[assertive_base]; broken = true; }; + assertive_strings = derive2 { name="assertive.strings"; version="0.0-3"; sha256="0n6jrk88670g4ym0r8ii40a08a90z1xadj8wcryk8h0nl04dchfm"; depends=[assertive_base assertive_types stringi]; broken = true; }; + assertive_types = derive2 { name="assertive.types"; version="0.0-3"; sha256="0zxq1jfrzgw95ll7alvm0xnk7aihjdksngq4ya2whyvfjbmv4vdb"; depends=[assertive_base assertive_properties codetools]; broken = true; }; astrolibR = derive2 { name="astrolibR"; version="0.1"; sha256="0gkgry5aiz29grp9vdq9zgg6ss47ql08nwcmz1pfvd0g0h9h75l8"; depends=[]; broken = true; }; asypow = derive2 { name="asypow"; version="2015.6.25"; sha256="0il38djkmw5ka7czpalmhq6yycx7flpdpgbd7p5nx52rsjdv49mj"; depends=[]; broken = true; }; atmcmc = derive2 { name="atmcmc"; version="1.0"; sha256="05k69b5wlysz3kh0yiqvshgvr0nyz34zkvn6bjs30cwz7s9j21pn"; depends=[]; broken = true; }; @@ -21024,18 +21347,20 @@ in with self; { bPeaks = derive2 { name="bPeaks"; version="1.2"; sha256="1z6jghcmw0lwv17ms7gdp5zzimaawq3ahbwkxa4062g373592smd"; depends=[]; broken = true; }; bRacatus = derive2 { name="bRacatus"; version="1.0.11"; sha256="0mj9bqgvmss9jdaphc4rgmxp4909lnwgi3c86pr6yfsd9zcjgd74"; depends=[data_table geojsonio jsonlite maptools plotfunctions raster rgbif rgdal rgeos rworldmap sp]; broken = true; }; babar = derive2 { name="babar"; version="1.0"; sha256="13j5klrcnd4dwrgdbxlvwcj56l9mzi4j9ga6jj5i04pgdc6vsfx5"; depends=[]; broken = true; }; + babette = derive2 { name="babette"; version="2.3.3"; sha256="0c9v6dm3n9bnr5x4nln9a51dff557vrhxdfji9xikwnz0vv8656v"; depends=[beastier beautier mauricer phangorn remotes stringr tracerer xml2]; broken = true; }; badgecreatr = derive2 { name="badgecreatr"; version="0.2.0"; sha256="0mdixklaxky5gs8zm99ky280vxxlbq1mxnaarq6x0d1cb71bzv4l"; depends=[git2r]; broken = true; }; baggedcv = derive2 { name="baggedcv"; version="1.0"; sha256="1rqs4sm6g1anck5s2dxlm1vcmylpphcbs2dpvf1sjki5lrzdq9z4"; depends=[doParallel foreach kedd mclust]; broken = true; }; baggingbwsel = derive2 { name="baggingbwsel"; version="1.0"; sha256="0khvkxml4nwkahgl5ijdv0bjgwabmznzq99p71iw26ck808hafkl"; depends=[doParallel foreach kedd mclust misc3d nor1mix Rcpp rgl rpanel sm tkrplot]; broken = true; }; - baker = derive2 { name="baker"; version="1.0.0"; sha256="166j6b2j3r0apsnvcnfycxhf1kv4nblscmnjdl2xsw5wwrbx677f"; depends=[abind binom coda ggplot2 ggpubr gridExtra lubridate mgcv mvbutils R2jags reshape2 rjags robCompositions shinydashboard shinyFiles]; broken = true; }; bamboo = derive2 { name="bamboo"; version="0.9.25"; sha256="1il8sn8ck36b1m9hazhf6gmr58iqi2hjn0rrpcv1laij0lybrcws"; depends=[rscala]; broken = true; }; barplot3d = derive2 { name="barplot3d"; version="1.0.1"; sha256="182kpiknv3id1bsgcc6b3ahbxmm8x3lxcpf1r6rckpr3s0whfx3g"; depends=[rgl]; broken = true; }; + baseballDBR = derive2 { name="baseballDBR"; version="0.1.2"; sha256="0w54g1avcqamc12lmvjchlqbqck9jfjccm441k03nsql460mpydq"; depends=[dplyr magrittr rvest xml2]; broken = true; }; baseballr = derive2 { name="baseballr"; version="1.5.0"; sha256="0n6ajc846cddi7617pgkm2ywkl7147m2gnhwx8wm4jyj7g3snsw3"; depends=[cli data_table dplyr ggplot2 glue httr janitor jsonlite lubridate magrittr purrr Rcpp RcppParallel rlang rvest stringr tibble tidyr]; broken = true; }; + basecamb = derive2 { name="basecamb"; version="1.1.2"; sha256="01zigv4wp19vmp645dzvbr26nrvhv4jxpqssvfc480v0dj3mavva"; depends=[assertive_types assertthat dplyr Hmisc mice purrr survival]; broken = true; }; baseflow = derive2 { name="baseflow"; version="0.13.2"; sha256="02ygx32dfszk66f33wfszkvwi51v8zw2s45y9nlrgfws9rlpzll2"; depends=[airGR]; broken = true; }; basicTrendline = derive2 { name="basicTrendline"; version="2.0.5"; sha256="0402nvm3i32sx3m3c7r74iaj22h570v819yiwkraicjpmg55dghi"; depends=[investr scales]; broken = true; }; bastah = derive2 { name="bastah"; version="1.0.7"; sha256="08xdba16wj0inp0kq2sbcrdr6wj8bwlq7rqnfrzjrz03wxhc5bk0"; depends=[BigQuic foreach glmnet lars MASS Matrix scalreg]; broken = true; }; batchr = derive2 { name="batchr"; version="0.0.2"; sha256="0fkrv6dlyla7bbl00f16lypnz5idyjz9kdqslgbx3pnfwx5hngwx"; depends=[chk cli furrr hms hmstimer yesno]; broken = true; }; - bayesSurv = derive2 { name="bayesSurv"; version="3.6"; sha256="1y1jqd1c2rg4s73ffyq8wjkpq35321nzywigcgh6vkjpd8r8xhpx"; depends=[coda smoothSurv survival]; broken = true; }; + bayeslincom = derive2 { name="bayeslincom"; version="1.3.0"; sha256="0gk2ybp0m717kv986j91n5amfc282gdpcrjkq46gwzn0zhyxg8b8"; depends=[ggplot2]; broken = true; }; bayesloglin = derive2 { name="bayesloglin"; version="1.0.1"; sha256="0j2ziahf6mwsz2gvb1azvdzlmszlpqgr5zqcqa68pxgq947sa2cs"; depends=[igraph]; broken = true; }; bayesmodels = derive2 { name="bayesmodels"; version="0.1.1"; sha256="1m9428fzirpfzypd2zdcqhjv2cm05s3qmlxj4ymz6i1dg32svqzr"; depends=[BASS bayesforecast brms bsts cli crayon dials dplyr magrittr modeltime parsnip purrr rlang Rlgt rstan rstudioapi tibble timetk workflows]; broken = true; }; bayespref = derive2 { name="bayespref"; version="1.0"; sha256="0gwlzs7qkgmf90np7xv85d27jjqggyhfj00vpya664a2znyjb3jm"; depends=[coda lattice MASS MCMCpack RColorBrewer]; broken = true; }; @@ -21043,11 +21368,12 @@ in with self; { bbemkr = derive2 { name="bbemkr"; version="2.0"; sha256="015c57s8mpimm82nddnh382wlkisxgdmc2hvp7k38pcnqxc5gb5q"; depends=[MASS]; broken = true; }; bbo = derive2 { name="bbo"; version="0.2"; sha256="19xrbla3bb3csg3gjjrpkgyr379zfwyh293bcrcd6j8rnm6g4i01"; depends=[]; broken = true; }; bbricks = derive2 { name="bbricks"; version="0.1.4"; sha256="1hv4hvnns9vgl6c3n7kg3g9mfcp26ksps29hdl5nwi28cgkx80w2"; depends=[]; broken = true; }; + bbsBayes = derive2 { name="bbsBayes"; version="2.5.3"; sha256="0vh7idcj89l5nlgg0kf41pvs1d1lpn5r1p254afcycn0sr06ky6f"; depends=[dplyr geofacet ggplot2 ggrepel jagsUI mgcv progress rappdirs sbtools sf stringr]; broken = true; }; bcTSNE = derive2 { name="bcTSNE"; version="0.11.1"; sha256="1j7aab9j30iypbjvid3dfg8rnz69i83k59ympkycv9k6xwpi330p"; depends=[RSpectra Rtsne splatter]; broken = true; }; bcc = derive2 { name="bcc"; version="1.3.1"; sha256="0ac0wasdifd0v47r9sxrsix5hv7masiphn6dyxpqdrd11z7iimgz"; depends=[qcc]; broken = true; }; bcf = derive2 { name="bcf"; version="1.3.1"; sha256="04vjvzh8y1dfk6ms5zwbylbfalwngvyjbjcszx26v2fakdk990p7"; depends=[Rcpp RcppArmadillo]; broken = true; }; bcpmeta = derive2 { name="bcpmeta"; version="1.0"; sha256="02fw1qz9cvr7pvmcng7qg7p04wxxpmvb2s8p78f52w4bf694iqhl"; depends=[mvtnorm]; broken = true; }; - bdvis = derive2 { name="bdvis"; version="0.2.33"; sha256="0gcc41pbvx245pcdrm9wxn3clg0iczpqvgrhzmy8c0dz2jfbzc9j"; depends=[chron ggplot2 lattice maps plotrix plyr rgdal sqldf taxize treemap]; broken = true; }; + bdpopt = derive2 { name="bdpopt"; version="1.0-1"; sha256="1z7mdqklw3frsdzyhvx8s8wvblwm28fr1gca2yrivqjng0r47lx4"; depends=[coda rjags]; broken = true; }; bdynsys = derive2 { name="bdynsys"; version="1.3"; sha256="07gfyp0qwq9y1cnh7lhcz7q0b1s51cjwlbpll50l2cza2dszmf29"; depends=[caTools deSolve Formula Hmisc MASS matrixStats plm pracma]; broken = true; }; beadarrayFilter = derive2 { name="beadarrayFilter"; version="1.1.0"; sha256="044dq5irc00v2f2gjz0vb69w7q7b84lppc55ganabdv4f0dxdblc"; depends=[beadarray RColorBrewer]; broken = true; }; beginr = derive2 { name="beginr"; version="0.1.7"; sha256="1a1lzjmq0qimm8yrb4n6knh23gyqxgax60n95rih95sg34904d0m"; depends=[cranlogs]; broken = true; }; @@ -21066,6 +21392,7 @@ in with self; { binomialMix = derive2 { name="binomialMix"; version="1.0.1"; sha256="1ak3h0lgjmrv9miwn7fl6jvcp8xdld53swjz71q67q999s42np0m"; depends=[dplyr gmp lubridate MASS rlang Rmpfr stringr]; broken = true; }; binomialcftp = derive2 { name="binomialcftp"; version="1.0"; sha256="00c7ymlxk1xnx3x1814x7bcyir7q5sy4rb82dcpzf2bdly4xa1qr"; depends=[]; broken = true; }; binomlogit = derive2 { name="binomlogit"; version="1.2"; sha256="1njz1g9sciwa8q6h0zd8iw45vg3i1fwcvicj5y8srpk8wqw3qp7k"; depends=[]; broken = true; }; + bioOED = derive2 { name="bioOED"; version="0.2.1"; sha256="0wx58bngpzlrbbcnx8l1lqhsg51y98wcym1238p87drf64x2mj1n"; depends=[bioinactivation corrplot dplyr FME ggplot2 rlang tidyr tidyselect tidyverse]; broken = true; }; biogeo = derive2 { name="biogeo"; version="1.0"; sha256="14sqgg8b06gp5dajxvyj9s3ndsk7jpkfr0mkyl2l61kgp6qx53rh"; depends=[maptools raster sp stringr vegan]; broken = true; }; biokNN = derive2 { name="biokNN"; version="0.1.0"; sha256="113lynbxmv88ycvbsq9drn2f75md7yajhicfw8qd8l6lawiq1fqc"; depends=[cluster desc dplyr ggplot2 lme4 magrittr mice mitml tidyr]; broken = true; }; bioset = derive2 { name="bioset"; version="0.2.3"; sha256="15vchim8cim42j1if0jars696rh50vmbggr9748q321f6ngm1w1i"; depends=[dplyr magrittr rlang tibble tidyr]; broken = true; }; @@ -21073,7 +21400,6 @@ in with self; { bisect = derive2 { name="bisect"; version="0.9.0"; sha256="1dr95gnc9rb3i8603wspf0hznmvk5akk46nyf1bhv88mjz2i5q77"; depends=[]; broken = true; }; bisg = derive2 { name="bisg"; version="0.1.0"; sha256="08imhy6vsx5axwxz93cbzxs8wf28vdp8avny47v5mw4ihm0kbprn"; depends=[dplyr rlang stringr tidycensus tigris wru]; broken = true; }; bitsqueezr = derive2 { name="bitsqueezr"; version="0.1.1"; sha256="0dy180r9cclq46mh0fzc68p5zm9x2z5pa8ajgsk7qycdkyw5v829"; depends=[]; broken = true; }; - bivariatemaps = derive2 { name="bivariatemaps"; version="1.0"; sha256="0ciyqf3swr86l98yfjwcnr507k5xjapk1v6iq9vnpkgrc9w3j5m9"; depends=[classInt raster rgeos sp]; broken = true; }; bivquant = derive2 { name="bivquant"; version="0.1"; sha256="05dn4qik2dvmgqc2613vddh312bqhza1vnf94an75888gxri5h03"; depends=[copula cubature lpSolve MASS mvtnorm regpro]; broken = true; }; bjscrapeR = derive2 { name="bjscrapeR"; version="0.1.0"; sha256="18chbgiwify272iqf0w4vsqh73wbk12d8m2awc5hbnfqblz3phwd"; depends=[dplyr glue readr tibble]; broken = true; }; blendedLink = derive2 { name="blendedLink"; version="1.0"; sha256="19d1pnjag89jjvkl5a6wx531qjqp4cv5jk95md6jby27yr52r8vp"; depends=[]; broken = true; }; @@ -21098,14 +21424,13 @@ in with self; { bootsPLS = derive2 { name="bootsPLS"; version="1.1.2"; sha256="19ikz3l0qds25hgcxvhsvqy6jyshcdvnxw6774ifl9ylngxvlfh0"; depends=[mixOmics]; broken = true; }; bootspecdens = derive2 { name="bootspecdens"; version="3.0"; sha256="0hnxhfsc3ac4153lrjlxan8xi4sg1glwb5947ps6pkkyhixm0kc1"; depends=[MASS]; broken = true; }; boottol = derive2 { name="boottol"; version="2.0"; sha256="01dps9rifzrlfm4lvi7w99phfi87b7khx940kpsr4m9s168a2dzv"; depends=[boot plyr]; broken = true; }; - boxcoxmix = derive2 { name="boxcoxmix"; version="0.28"; sha256="12f1lakfy9i1rq70cq0bffpdachsm58rcmbbhgnq1r31g028zrcc"; depends=[npmlreg qicharts statmod]; broken = true; }; - bpca = derive2 { name="bpca"; version="1.3-4"; sha256="1b0qigynj35sr5nf9y6hvcr52ydskqwx5wxwb27zawps3iykyjwf"; depends=[rgl scatterplot3d xtable]; broken = true; }; bpcs = derive2 { name="bpcs"; version="1.0.0"; sha256="0jsy2l1qnzr8098614d6pj7rydf6b9s7kxrkahyzq82ivby9hj5m"; depends=[badger BH coda dplyr ggplot2 gtools HDInterval knitr loo magrittr Rcpp RcppEigen RcppParallel rlang rstan rstantools shinystan StanHeaders stringr tibble tidyr tidyselect]; broken = true; }; breakage = derive2 { name="breakage"; version="1.1-1"; sha256="0zjazyz92criiimpz4wyd4hd8ccspvh3hhqpd4qkfdzdf9wp3kns"; depends=[Imap]; broken = true; }; brickr = derive2 { name="brickr"; version="0.3.5"; sha256="1a6yxhq2zly3i3gs4dd19xhyrin1qaxdr7x3a887j7zbcj0j4z9q"; depends=[colorspace dplyr farver ggplot2 magrittr purrr rgl scales tidyr]; broken = true; }; briskaR = derive2 { name="briskaR"; version="1.0.4"; sha256="016gpgbf5zc9jkagj439n2ylfbmsikg0n6v76wf4lchv4wvrsby4"; depends=[deldir deSolve fasterize fftwtools MASS mvtnorm raster Rcpp RcppArmadillo rgdal rgeos sf sp testthat]; broken = true; }; brolgar = derive2 { name="brolgar"; version="1.0.0"; sha256="0jw0cnszwdcj6jdxpr17bq338jaxihaacg62rr3n1ayig54bgbyn"; depends=[dplyr fabletools ggplot2 glue magrittr purrr rlang tibble tidyr tsibble vctrs]; broken = true; }; broomExtra = derive2 { name="broomExtra"; version="4.3.2"; sha256="02ijhqgymm8nv40fy4j6psqkhak3dfwz8i5k0ay3g7aic49lzcbf"; depends=[broom broom_mixed dplyr magrittr parameters performance rlang]; broken = true; }; + brr = derive2 { name="brr"; version="1.0.0"; sha256="050ivnqcaxiyypd1sxfpy6ianhzzmvs6c77ga40g3440cvfigkgw"; depends=[gsl hypergeo pander stringr SuppDists TeachingDemos]; broken = true; }; brranching = derive2 { name="brranching"; version="0.7.0"; sha256="06jy3qhbr0v4m1j4j8a7fb7ic59sx4zhlsm1yb3g6rdwc00d67wj"; depends=[ape conditionz crul curl phylocomr phytools taxize]; broken = true; }; bsem = derive2 { name="bsem"; version="1.0.0"; sha256="1h4wsib6ppqj8nbvj4pzkm04bzrdkg9l7xfmzzmld9cswai4iw52"; depends=[BH coda DiagrammeR lattice magrittr Rcpp RcppEigen rstan rstantools shiny StanHeaders viridis visNetwork]; broken = true; }; buffeRs = derive2 { name="buffeRs"; version="0.31"; sha256="1yr2bg2cyl8sm4g7jrjw9apj5lqhbqscw5mshs8r8niz0fkyq6lg"; depends=[sf]; broken = true; }; @@ -21118,6 +21443,7 @@ in with self; { cairoDevice = derive2 { name="cairoDevice"; version="2.28.2.1"; sha256="040gd6cyaabdi0lhfdba4isqjihj28hdxm7mc129nl863pxkx6qm"; depends=[]; broken = true; }; calcWOI = derive2 { name="calcWOI"; version="1.0.3"; sha256="1bxsn9b99hnb365qvlzr0ymwavamlyhs5sm9s2fdjh4zv3f32n3l"; depends=[dualtrees LS2W wavethresh]; broken = true; }; caliver = derive2 { name="caliver"; version="2.0.0"; sha256="04qa3zrk70c8ak70djfh23jyfxs8293s8wzkk6cs0nyrknhaxzzj"; depends=[ggplot2 lubridate ncdf4 raster rworldmap]; broken = true; }; + camtrapR = derive2 { name="camtrapR"; version="2.2.0"; sha256="12lhw8r1r3xlazm1w3x73fq3krwpvbv6w3rsmlmksaai4nxp2fn8"; depends=[data_table generics ggplot2 lubridate overlap secr sf sp]; broken = true; }; canadacovid = derive2 { name="canadacovid"; version="0.3.4"; sha256="1hxcz3bk0p063cidj19zzacvxarpracnzglmb1212b2jx9w4i3gw"; depends=[dplyr httr jsonlite lubridate magrittr purrr rlang stringr tibble tidyr tidyselect]; broken = true; }; captioner = derive2 { name="captioner"; version="2.2.3"; sha256="0xg72pmgm84f0v45phfwxpsslhf12nhn1swmrj1yifj7g9sjvybj"; depends=[]; broken = true; }; capwire = derive2 { name="capwire"; version="1.1.4"; sha256="18a3dnbgr55yjdk6pd7agmb48lsiqjpd7fm64dr1si6rpgpl4i9c"; depends=[]; broken = true; }; @@ -21132,7 +21458,6 @@ in with self; { catnet = derive2 { name="catnet"; version="1.15.7"; sha256="015qh9k0jj5plp777j3kl20601qiwadkaqrdb0483h3gwqwy828g"; depends=[]; broken = true; }; catspec = derive2 { name="catspec"; version="0.97"; sha256="1crry0vg2ijahkq9msbkqknljx6vnx2m88bmy34p9vb170g9dbs1"; depends=[]; broken = true; }; cattonum = derive2 { name="cattonum"; version="0.0.5"; sha256="11h9nh2i2bmd0b562l5avhwpj9ppnfmzd9nsv94cymhwn5h6nmg6"; depends=[dplyr purrr Rcpp rlang tibble tidyselect]; broken = true; }; - causalOT = derive2 { name="causalOT"; version="0.1.2"; sha256="04j546sg4b1alq71xaxkh5hqckvqzcyz3nihgdnnxw60gmd4yal6"; depends=[approxOT BH lbfgsb3c loo Matrix matrixStats osqp pbapply R6 Rcpp RcppEigen reticulate RSpectra sandwich]; broken = true; }; cbar = derive2 { name="cbar"; version="0.1.3"; sha256="1jy52qnpjvszdd8xviv3vr00ds6bah73q0mhd4kixf68jafnxd35"; depends=[Boom bsts dplyr ggplot2 magrittr]; broken = true; }; cbird = derive2 { name="cbird"; version="1.0"; sha256="0kzylylk46swd7f0j6kjyrcs3plbx9799q9kb8hjxmgh0qcjk2p6"; depends=[]; broken = true; }; cblasr = derive2 { name="cblasr"; version="1.0.0"; sha256="1bz8d4124qpja4bvzn6k1swi89cfyrcpwg2nwyj4r8y0m1hbpc71"; depends=[Rcpp]; broken = true; }; @@ -21155,7 +21480,6 @@ in with self; { cgdsr = derive2 { name="cgdsr"; version="1.3.0"; sha256="07yc819hkabpzzh0g0cbqza6bcfy67b2marrzz1lj97f9iba78ja"; depends=[httr R_methodsS3 R_oo]; broken = true; }; cghRA = derive2 { name="cghRA"; version="1.6.0"; sha256="16dlw27s8wckc75xcwc2g74pw6bar0y0ii3h53w1hql05d4f7sb8"; depends=[DNAcopy Rgb]; broken = true; }; cgraph = derive2 { name="cgraph"; version="6.0.1"; sha256="0hmp07iz7ya3j8jaghm4pa0b84lsinc48rsibbh47sd3i6pkxfik"; depends=[]; broken = true; }; - changeRangeR = derive2 { name="changeRangeR"; version="1.0.2"; sha256="06i4r6ylwq551lm2l7mg2av1l04ijwrj2d8y0avdf1c83spir7dy"; depends=[dplyr phylobase rangeModelMetadata raster rgeos sf sp]; broken = true; }; changedetection = derive2 { name="changedetection"; version="0.2.0"; sha256="0j8x7qyna7qgjhx56yxav1g3wj3r47zvx2hivybsjis2gqbl82hr"; depends=[glmnet L1pack Rdpack]; broken = true; }; changepoint_mv = derive2 { name="changepoint.mv"; version="1.0.2"; sha256="0bji0m4ks2lf9s1rnq58w97ywpgs3m9rpm5p5f70f0kn33yffrix"; depends=[assertive ggplot2 Rcpp Rdpack reshape2 tbart zoo]; broken = true; }; changepointsHD = derive2 { name="changepointsHD"; version="0.3.3"; sha256="1wdhmkg21kb5jd95a0aqqp2qgdkndc69rbdxjf792gq8f1rigarh"; depends=[Rcpp RcppArmadillo]; broken = true; }; @@ -21184,7 +21508,6 @@ in with self; { clinUtiDNA = derive2 { name="clinUtiDNA"; version="1.0"; sha256="0x3hb09073gkh60fc8ia0sfk948sm6z6j8sqkz275k4m8ryrabas"; depends=[]; broken = true; }; clpAPI = derive2 { name="clpAPI"; version="1.3.1"; sha256="0hjpdbmwaww5fznqkkg9jli5y8f8zyd7crn0imdb0xxypmnp7zgf"; depends=[]; broken = true; }; clustcurv = derive2 { name="clustcurv"; version="2.0.1"; sha256="1xkl84pd1a3phl5yfm21yr5c0gbmmg1wk9b0lyl2x8466v5hl53q"; depends=[doParallel doRNG foreach ggfortify ggplot2 Gmedian npregfast RColorBrewer survival]; broken = true; }; - clusterCrit = derive2 { name="clusterCrit"; version="1.2.8"; sha256="10pz1bikdbkm2ky3xnagp0qv60whalavp6j39b4p7d75jj5xcxgk"; depends=[]; broken = true; }; clusterGenomics = derive2 { name="clusterGenomics"; version="1.0"; sha256="127hvpg06is4x486g1d5x7dfkrbk7dj35qkds0pggnqxkq3wsc1c"; depends=[]; broken = true; }; clusterPower = derive2 { name="clusterPower"; version="0.7.0"; sha256="1ha7iz1afmgccxhxsl3y1fd9rbf35nrzp6bsz4c4zl0931xbazfb"; depends=[car dplyr foreach lme4 lmerTest mathjaxr nlme progress R_utils shiny tidyr]; broken = true; }; clustsig = derive2 { name="clustsig"; version="1.1"; sha256="0n5nf712vsa8zb0c2lv4gjqsgva62678vjngr9idgswb73shxm8v"; depends=[]; broken = true; }; @@ -21204,22 +21527,21 @@ in with self; { composits = derive2 { name="composits"; version="0.1.1"; sha256="0njz6yn3dxi5czzmp93lcz2xr5gphiii857s5jggygq0xdszlx86"; depends=[anomalize dobin dplyr fastICA forecast ggplot2 gridExtra ICS kableExtra otsad pracma rlang tibble tidyr tsoutliers]; broken = true; }; compstatr = derive2 { name="compstatr"; version="0.2.1"; sha256="0pg8yacfb7jvg9xr0gmis8a4g339isd77h6wr8dd6w900q47xac0"; depends=[dplyr fs httr janitor lubridate purrr readr rlang rvest sf stringr tibble tidyr xml2]; broken = true; }; comtradr = derive2 { name="comtradr"; version="0.3.0"; sha256="17fdcgx27352jqdvz05q3crg29h78d0alp0abxmkzymwk3yq842j"; depends=[httr jsonlite magrittr purrr]; broken = true; }; + concreg = derive2 { name="concreg"; version="0.7"; sha256="0g4my3ra9p797vcky5hsgcicsdbmczgd8fklxrkw2jrgwc0xrkaf"; depends=[survival]; broken = true; }; concurve = derive2 { name="concurve"; version="2.7.7"; sha256="185jwz7a33sc9gbkfbcxwzgzd39xn5x72d0nk6p045mq3xssk3j9"; depends=[bcaboot boot colorspace dplyr flextable ggplot2 knitr metafor officer pbmcapply ProfileLikelihood scales survival survminer tibble tidyr]; broken = true; }; condmixt = derive2 { name="condmixt"; version="1.1"; sha256="1x6n3ylaa9ywvz7v63i2pvd2lxm95wq19xy741g9hy73ld7hd7zn"; depends=[evd]; broken = true; }; confoundr = derive2 { name="confoundr"; version="1.2"; sha256="000vf828qv04pplx8yc8q3mafxf4g0axip6z5zbsj2581yxv9jjh"; depends=[dplyr ggplot2 gridExtra magrittr purrr rlang Rmpfr scales stringr tidyr]; broken = true; }; conics = derive2 { name="conics"; version="0.3"; sha256="06p6dj5dkkcy7hg1aa7spi9py45296dk0m6n8s2n3bzh3aal5nzq"; depends=[]; broken = true; }; - connections = derive2 { name="connections"; version="0.1.1"; sha256="08fbyzyp26nh1a46p0zi3q0wzgl0cd9bjp4lhw2bwv1bv7yayamp"; depends=[DBI dbplyr dplyr pins rscontract uuid]; broken = true; }; - constrainedKriging = derive2 { name="constrainedKriging"; version="0.2.4"; sha256="1a91s0b7yka37fb5pm172fmlqrhm6da370cqb9knvkg5n8vi4hys"; depends=[RandomFields rgeos sp spatialCovariance]; broken = true; }; contact = derive2 { name="contact"; version="1.2.8"; sha256="1db3vgjlz0ivw3sx37mwy7ngjx0in3rxlm3i3akh4xzbfp9gjj87"; depends=[ape data_table doParallel foreach igraph lubridate raster rgdal rgeos sp]; broken = true; }; contextual = derive2 { name="contextual"; version="0.9.8.4"; sha256="0lww36nymg2cla83jdvl7a42cwn0il20apciz0ddplq8rw2i0a91"; depends=[data_table doParallel foreach Formula iterators itertools R_devices R6 rjson]; broken = true; }; conting = derive2 { name="conting"; version="1.7"; sha256="08f271j3gxcp4shda08kkv0v9ayaadvxgcglfsn6hjmw4hn298zg"; depends=[BMS coda gtools mvtnorm tseries]; broken = true; }; convertGraph = derive2 { name="convertGraph"; version="0.1"; sha256="1jsrygj6ydzc0nzyzaq95j4blqavj7dqz182vgm1ckv8an3if0jx"; depends=[]; broken = true; }; convexjlr = derive2 { name="convexjlr"; version="0.8.1"; sha256="1x2ra1xcyd7bvc7wq49wpihh0g9ygh1bq5214vvrhfrjfjifvlaw"; depends=[JuliaCall magrittr]; broken = true; }; - cookiemonster = derive2 { name="cookiemonster"; version="0.0.1"; sha256="0hd4cijmiqip0a2dxqncan6gy4kjkrqgxzsw33fzmm0xqys0ajl0"; depends=[cli openssl rappdirs stringi tibble urltools vctrs]; broken = true; }; cooptrees = derive2 { name="cooptrees"; version="1.0"; sha256="0izvwna1jsqik3v5fz1r4c86irvma42clw0p4rdvwswv5pk698i1"; depends=[gtools igraph optrees]; broken = true; }; corTools = derive2 { name="corTools"; version="1.0"; sha256="0arvqk2xp19ap73zmdk0kb1fycb3v2mf65b4bhanvcqwr4kg4vdk"; depends=[]; broken = true; }; coreTDT = derive2 { name="coreTDT"; version="1.0"; sha256="14rnh61gk3m6g8rq77hm9ybds0px15di2mxm3jiyfdfynx5ng58f"; depends=[]; broken = true; }; coreheat = derive2 { name="coreheat"; version="0.2.2"; sha256="1mahnd6k7whd7nj9ax1fhpm17j35i6prww06qx691l8dfn954ld9"; depends=[Biobase convertid heatmapFlex WGCNA]; broken = true; }; + corncob = derive2 { name="corncob"; version="0.3.2"; sha256="0ipcs9crwlvi1gxqj87318dxx2hv4xrvcinci262z2zq8br1s3ps"; depends=[detectseparation dplyr ggplot2 magrittr numDeriv optimr phyloseq scales trust VGAM]; broken = true; }; corpus = derive2 { name="corpus"; version="0.10.2"; sha256="0fxa38xbd5fyhh0q1ycx8snj7ly8hv9jclbs77agkb6pb6p7yr64"; depends=[utf8]; broken = true; }; cort = derive2 { name="cort"; version="0.3.2"; sha256="1iayvgwjmpmb96w5841jxhwivca7s4v5bpsdy0lrbk121saqq5z1"; depends=[furrr nloptr osqp purrr Rcpp Rdpack]; broken = true; }; couchDB = derive2 { name="couchDB"; version="1.4.1"; sha256="1n99amvnsjp88y091603hjsvp243c5i6dbrsvdjfmzgj5dsrv70m"; depends=[bitops httr RCurl rjson]; broken = true; }; @@ -21229,6 +21551,7 @@ in with self; { covidregionaldata = derive2 { name="covidregionaldata"; version="0.9.3"; sha256="1pq3il8wzygih419avf3nn5swd0z09mf2n0q361w3n7aa2m20yjf"; depends=[countrycode dplyr httr jsonlite lifecycle lubridate memoise purrr R6 readxl rlang stringr tidyr tidyselect vroom xml2]; broken = true; }; covreg = derive2 { name="covreg"; version="1.0"; sha256="0v19yhknklmgl58zhvg4szznb374cdh65i7s8pcj2nwrarycwzaq"; depends=[]; broken = true; }; coxinterval = derive2 { name="coxinterval"; version="1.2"; sha256="0vb7vmzbb2dsihx04jbp2yvzcr033g435mywmwimqhfqdrmjx3fi"; depends=[Matrix survival timereg]; broken = true; }; + coxmeg = derive2 { name="coxmeg"; version="1.1.4"; sha256="10g4l33iwv09lm9j32kh1i003b3351v9ss3wrd6a497xgz20krhr"; depends=[MASS Matrix microbenchmark nloptr rARPACK Rcpp RcppEigen SeqArray SNPRelate]; broken = true; }; cpca = derive2 { name="cpca"; version="0.1.2"; sha256="1pccsjahb1qynnxa0akhfpcmhfmdg4rd1s6pfqrdl7bwbcmq4lqf"; depends=[]; broken = true; }; cpk = derive2 { name="cpk"; version="1.3-1"; sha256="1njmk2w6zbp6j373v5nd1b6b8ni4slgzpf9qxn5wnqlws8801n73"; depends=[]; broken = true; }; cplexAPI = derive2 { name="cplexAPI"; version="1.4.0"; sha256="00h2zir1ffzjiglfyq8bsfmgq9z155jr0k0fxv8fsbfyw2x9dg10"; depends=[]; broken = true; }; @@ -21243,7 +21566,6 @@ in with self; { crrp = derive2 { name="crrp"; version="1.0"; sha256="1fq54jr6avrli91a4z1hp5img4kghyw1yvjr5xyccsanf9i35x8r"; depends=[cmprsk Matrix survival]; broken = true; }; crtests = derive2 { name="crtests"; version="0.2.1"; sha256="0z8idz37dgwvi1q2vryldii7fn9yxd32gds77ml76jfplxbkikpd"; depends=[caret plyr stringr]; broken = true; }; csSAM = derive2 { name="csSAM"; version="1.2.4"; sha256="1ms8w4v5m9cxs9amqyljc2hr1178cz6pbhmv7iiq9yj1ijnl4r1x"; depends=[]; broken = true; }; - csa = derive2 { name="csa"; version="0.7.0"; sha256="0cmabcvfxfplnzx7mdsfas3jhgz44y86411amaphm75zmv8khcif"; depends=[data_table doParallel foreach ggplot2 ggpubr Lmoments moments raster reshape2 scales]; broken = true; }; csabounds = derive2 { name="csabounds"; version="1.0.0"; sha256="15l7i15w5jk4h3148dlk8v2i4awns5vxvv6m59qcv0hzns6jhx9j"; depends=[BMisc ggplot2 pbapply progress qte]; broken = true; }; csrplus = derive2 { name="csrplus"; version="1.03-0"; sha256="0kljndmiwblsvvdnxfywida9k0dmdwjq63d934l5yl6z7k4zd0xa"; depends=[sp]; broken = true; }; cstar = derive2 { name="cstar"; version="1.0"; sha256="1zws4cq5d37hqdxdk86g85p2wwihbqnkdsg48vx66sgffsf1fgxd"; depends=[]; broken = true; }; @@ -21255,13 +21577,13 @@ in with self; { cvam = derive2 { name="cvam"; version="0.9.3"; sha256="1fq1xwxhpny8fy2l1a45vj9gj3czkifb1bnbi33dlf99vv1pml7r"; depends=[coda Formula]; broken = true; }; cvcqv = derive2 { name="cvcqv"; version="1.0.0"; sha256="0327r4jw6m4avcz1zvdkxszqwaw2s9sh1i1jagl6aggd7aaiiyg0"; depends=[boot dplyr MBESS R6 SciViews]; broken = true; }; cvq2 = derive2 { name="cvq2"; version="1.2.0"; sha256="19k95xg2y3wd4mx3wvbrc1invybd446g13vsp3dv05nw2kx4f6w8"; depends=[]; broken = true; }; - cwbtools = derive2 { name="cwbtools"; version="0.3.8"; sha256="1v7pan3d00km7yq03ym3xdvlqhwrlxg5w8y2dl34dlsm67xysxh1"; depends=[cli curl data_table fs httr jsonlite lifecycle pbapply R6 RcppCWB rstudioapi stringi xml2 zen4R]; broken = true; }; cwhmisc = derive2 { name="cwhmisc"; version="6.6"; sha256="1pf365g4f51cfrhlff9mqw2ddvkps0abax17zcn3vw1ba2djalnp"; depends=[lattice]; broken = true; }; cwm = derive2 { name="cwm"; version="0.0.3"; sha256="1ln2l12whjhc2gx38hkf3xx26w5vz7m377kv67irh6rrywqqsyxn"; depends=[MASS matlab permute]; broken = true; }; cyphid = derive2 { name="cyphid"; version="1.1"; sha256="0ya9w8aw27n0mvvjvni4hxsr4xc8dd08pjxx7zkfl1ynfn5b08am"; depends=[fda]; broken = true; }; cytoDiv = derive2 { name="cytoDiv"; version="0.5-3"; sha256="00c0gqgypywgbhavb15bvj6ijrk4b5zk86w85n9kwr4069b7jvwc"; depends=[GenKern plotrix]; broken = true; }; dagHMM = derive2 { name="dagHMM"; version="0.1.0"; sha256="1dw4clv2x71km1sqz1mydscwyj6y9yqx06v3rkmdz13qqcacfmhi"; depends=[bnclassify bnlearn future gtools matrixStats PRROC]; broken = true; }; dalmatian = derive2 { name="dalmatian"; version="1.0.0"; sha256="0hpyg8sl5v87l1hxax9sj863hy9njdyp7hnsaw3cida365p0dswa"; depends=[coda dglm dplyr ggmcmc rlang tidyr]; broken = true; }; + dapr = derive2 { name="dapr"; version="0.0.3"; sha256="136chxijyxrl5sbiggxf56zga26zqds647z1z2igwn5mdff1wxyb"; depends=[]; broken = true; }; darts = derive2 { name="darts"; version="1.0"; sha256="07i5349s335jaags352mdx8chf47ay41q7b0mh2xjwn2h9kzgqib"; depends=[]; broken = true; }; dash = derive2 { name="dash"; version="0.9.4"; sha256="1ggdfzlf7ayv2nc6qpmyrg3cx31cikhnv7smwpx6xlmj2sc75war"; depends=[assertthat base64enc brotli crayon digest fiery glue htmltools jsonlite magrittr mime plotly R6 reqres rlang routr]; broken = true; }; dashCoreComponents = derive2 { name="dashCoreComponents"; version="1.10.0"; sha256="11jrlls6k6qlvi81741ga908aw22m05fhhr9jpzli982s611jrwl"; depends=[]; broken = true; }; @@ -21270,13 +21592,13 @@ in with self; { dashTable = derive2 { name="dashTable"; version="4.7.0"; sha256="0iy07dxa90vsp3rfk8ij78j9ajz1mpxywmclxzkfj7axjyydxh5w"; depends=[]; broken = true; }; dashboard = derive2 { name="dashboard"; version="0.1.0"; sha256="1znqwvz49r47lp6q48qaas0s63wclgybav82a247qvcavzns3kip"; depends=[Rook]; broken = true; }; datadigest = derive2 { name="datadigest"; version="1.0.2"; sha256="1v4nwflrgjhwkrdlrjnqyq1spv1jkgxn1kmapml0zrvnvwf0r1a1"; depends=[haven Hmisc htmltools htmlwidgets jsonlite miniUI shiny tibble]; broken = true; }; + dataframes2xls = derive2 { name="dataframes2xls"; version="0.4.7"; sha256="10krlv0l5w021z0qd7rj93pzfjjmcjlda4xz4vq470bxbjmn1bss"; depends=[]; broken = true; }; datagovindia = derive2 { name="datagovindia"; version="1.0.5"; sha256="1k04k2bz56d3k1nbx8p8pc1x3cxrdmnpgbrgmxl5i1qg3yashj91"; depends=[curl dplyr httr magrittr plyr rlang stringr]; broken = true; }; datamap = derive2 { name="datamap"; version="0.1-1"; sha256="0qm4zb9ldg4wz1a7paj5ilr1dhyagq81rk9l2v43hmkv52sssgkv"; depends=[DBI]; broken = true; }; datamart = derive2 { name="datamart"; version="0.5.2"; sha256="0c0l157fzkcp30ch4ymaalcx18zhz6sa5srr50w9izhbx3pmldxp"; depends=[base64 gsubfn markdown RCurl RJSONIO XML]; broken = true; }; datapackage_r = derive2 { name="datapackage.r"; version="1.3.5"; sha256="01xx8alj3niznkrn3y2w9j1g60zn1fq0a2clf4r5p2pjyr2rqgy3"; depends=[config future httr iterators jsonlite jsonvalidate purrr R_utils R6 readr rlist stringr tableschema_r urltools V8]; broken = true; }; datastructures = derive2 { name="datastructures"; version="0.2.9"; sha256="0prw24iy1af02g1nzw588dv085bdnl6pzvizpxspmwzj6vrfbaav"; depends=[BH purrr Rcpp]; broken = true; }; dataversionr = derive2 { name="dataversionr"; version="0.9.0"; sha256="013c45fbak32bcda9zj8dk0jw57xpbriymks4n38d9nliflqr6z5"; depends=[arrow diffdfs dplyr lubridate magrittr purrr rlang tidyr]; broken = true; }; - datplot = derive2 { name="datplot"; version="1.0.0"; sha256="1y9pls1g2flz8n3jbh4jcp1fn78qwfbgsrzyf3jms9f6w8fs0f1d"; depends=[]; broken = true; }; dave = derive2 { name="dave"; version="2.0"; sha256="1rraphpp34czyjj15xzvj1ihlnqzcppqls9n2g85n49zv0n1ngn8"; depends=[cluster labdsv nnet tree vegan]; broken = true; }; dbEmpLikeGOF = derive2 { name="dbEmpLikeGOF"; version="1.2.4"; sha256="0vhpcxy702cp3lvlif2fzmvccys8iy7bv1fbg6ki2l8bvn2f7c5p"; depends=[]; broken = true; }; dbEmpLikeNorm = derive2 { name="dbEmpLikeNorm"; version="1.0.0"; sha256="0h5r2mqgallxf9hin64771qqn9ilgk1kpsjsdj2dqfl3m8zg967l"; depends=[dbEmpLikeGOF]; broken = true; }; @@ -21315,14 +21637,13 @@ in with self; { diffMeshGP = derive2 { name="diffMeshGP"; version="0.1.0"; sha256="1dc37hxh3fi27gw11kij57j78p87bza77s82niagdv6dqhldj5a4"; depends=[]; broken = true; }; diffdepprop = derive2 { name="diffdepprop"; version="0.1-9"; sha256="0mgrm1isr26v2mcm6fkzc7443ji00vpnqmw4zngx81n7442b3cl2"; depends=[gee PropCIs rootSolve]; broken = true; }; diffman = derive2 { name="diffman"; version="0.1.1"; sha256="08b4kqxfg8pmyl2xg8flb581s9wnkdcy5rrmrxp8a89y265qmirx"; depends=[data_table dplyr igraph Matrix progress Rcpp sf tidyverse]; broken = true; }; + diffusr = derive2 { name="diffusr"; version="0.1.4"; sha256="1f3h387kblw1xzdnxphwgfl1n7f6i07kk7kfslvbfxkalbish6ii"; depends=[igraph Rcpp RcppEigen]; broken = true; }; dils = derive2 { name="dils"; version="0.8.1"; sha256="1q6ba9j14hzf7xy895mzxc6n9yjgind55jf350iqscwzxf7ynp33"; depends=[igraph Rcpp]; broken = true; }; dimensionalAnalysis = derive2 { name="dimensionalAnalysis"; version="0.1.0"; sha256="0pzncdrphnldgpvkm847wr6yrk30p1ayfwjlrg44kxackpl1w1y8"; depends=[caracas hash reticulate]; broken = true; }; - disaggregation = derive2 { name="disaggregation"; version="0.2.1"; sha256="0v7wqx84bawl6kw6izy530kqhr3g7bzbnma17s691b7dzz4f5cnf"; depends=[cowplot doParallel dplyr foreach ggplot2 Matrix raster RcppEigen sf sp sparseMVN splancs TMB]; broken = true; }; disastr_api = derive2 { name="disastr.api"; version="1.0.5"; sha256="1h5i6pwak16w0gdk8qjz4w9qpffjhzlsrvjkb4acrvgjgrsvz9kp"; depends=[httr jsonlite]; broken = true; }; discgolf = derive2 { name="discgolf"; version="0.2.0"; sha256="07clh1awnibgrh7vl4a51r8dbya2rbmicm8v8x8mq8h8am2b3j0s"; depends=[crul jsonlite xml2]; broken = true; }; disco = derive2 { name="disco"; version="0.6"; sha256="1abvhf0yb4mw02j1krjb7q68jpwdnl2narcalf3vkjcbflcp76z3"; depends=[ggplot2 RColorBrewer tmod]; broken = true; }; discreteMTP = derive2 { name="discreteMTP"; version="0.1-2"; sha256="13qsf1kc3rph0kkdkz31qj072www5dwjyk73lfpy141rzhcn1v1x"; depends=[]; broken = true; }; - diseasemapping = derive2 { name="diseasemapping"; version="2.0.3"; sha256="0hpf6q754kg1ycjar9vlip7xv57khd83r14s6x0zfh6yc8gwwwfw"; depends=[terra]; broken = true; }; diseq = derive2 { name="diseq"; version="0.4.6"; sha256="0j8xx40qs62ky5wrc4zymsfai2aqh2n3fcd17648n56d7m2p274x"; depends=[bbmle dplyr Formula magrittr MASS Rcpp RcppGSL RcppParallel rlang systemfit tibble tidyr]; broken = true; }; diskImageR = derive2 { name="diskImageR"; version="1.0.0"; sha256="1r19k5fdjn6vkn11p5df77fnxfqaz3nciiaai0f3pr2bgpfppzka"; depends=[subplex zoo]; broken = true; }; displayHTS = derive2 { name="displayHTS"; version="1.0"; sha256="0mqfdyvn2c5c3204ykyq29ydldsq0kb3a1d7mrzqr7cvrj1ahlqa"; depends=[]; broken = true; }; @@ -21331,11 +21652,13 @@ in with self; { distr6 = derive2 { name="distr6"; version="1.6.9"; sha256="1vl8xg0r0g169xdx6prnfpfr1jnn8mc4daayrzpws4my2dc59dqh"; depends=[checkmate data_table ooplah param6 R6 Rcpp set6]; broken = true; }; distribglm = derive2 { name="distribglm"; version="0.4.1"; sha256="09gpkp7s8y2dcpjhqgi2nl6j8pmd500y89d8c8x8sxmh5mg8n5si"; depends=[readr]; broken = true; }; diveRsity = derive2 { name="diveRsity"; version="1.9.90"; sha256="11pfq3syvjmfwfimjc2jnlprcnynvargr4yjd8h0aa6qzgdrrx5q"; depends=[ggplot2 qgraph Rcpp shiny]; broken = true; }; + dlookr = derive2 { name="dlookr"; version="0.6.2"; sha256="1v5wqbhpgh6fvcw68207x36fh4df007shrjwh1g4xpwxd2rhi3xs"; depends=[dplyr ggplot2 gridExtra hrbrthemes htmltools kableExtra knitr mice pagedown partykit purrr reactable rlang rmarkdown shiny showtext sysfonts tibble tidyr tidyselect]; broken = true; }; dmacs = derive2 { name="dmacs"; version="0.1.0"; sha256="1prw6h8sj6fcpajg6xwqhi8v5jfl74mbjdjrdy524miw56fh9h0r"; depends=[lavaan MplusAutomation]; broken = true; }; dmdScheme = derive2 { name="dmdScheme"; version="1.3.5"; sha256="0q7jnbk2ymm0vb0yk5xpg8krsj4gs8dcp7qg0pp1z74x635biqhz"; depends=[digest knitr magrittr rappdirs readxl rlang rmarkdown stringr writexl xml2 yaml]; broken = true; }; dmt = derive2 { name="dmt"; version="0.8.20"; sha256="0rwc8l9k2y46hslsb3y8a1g2yjxalcvp1l3v7jix0c5kz2q7917w"; depends=[MASS Matrix mvtnorm]; broken = true; }; dna = derive2 { name="dna"; version="2.1-2"; sha256="0l7i9640yd25cbxd3vbmlsqgk3pi2f7v6g5q0lrgycxl7jla9v1k"; depends=[]; broken = true; }; doMIsaul = derive2 { name="doMIsaul"; version="1.0.1"; sha256="17a363gj8hsdpga6b07c4lzrswgf553dfqxacv2jfx0rswxnrsb0"; depends=[aricode arules clusterCrit dplyr ggplot2 Gmedian MASS mice NbClust ncvreg plyr scales survival withr]; broken = true; }; + docket = derive2 { name="docket"; version="1.20"; sha256="104v18dqhw1npxyhrmpwvvnlmv9n67gh0pfv4983gmzalbka9xk9"; depends=[stringr XML xml2 zip]; broken = true; }; documair = derive2 { name="documair"; version="0.6-0"; sha256="1pphcbx90n9xn8a7gvfrwzfapwqgpbl3gg2grm7chfxgcp7i99i2"; depends=[]; broken = true; }; dominanceanalysis = derive2 { name="dominanceanalysis"; version="2.0.0"; sha256="0qxldvlgbysy9j17kb0a9p132a04a4j12h4m0r70zv2752fj24c0"; depends=[]; broken = true; }; dotdot = derive2 { name="dotdot"; version="0.1.0"; sha256="0d8inv2m7pkk6dnv9j9zai4lhghcg656l46d00rhp604rbhzlmw9"; depends=[]; broken = true; }; @@ -21348,26 +21671,23 @@ in with self; { drfit = derive2 { name="drfit"; version="0.7.2"; sha256="03ahzmjzrkdrv36yj6vfg3g5bwn6lb7mlxmli68sixag5h83xq7f"; depends=[DBI drc MASS odbc qcc reshape2]; broken = true; }; drmdel = derive2 { name="drmdel"; version="1.3.2"; sha256="1772fxm3qs01h14qklp2rawcdm0vmjmb2mi62v1zl1hbxisnfq4s"; depends=[]; broken = true; }; dropR = derive2 { name="dropR"; version="0.1"; sha256="0sw5lqlfdn64dbykxdhk1pz18f83if871vkapa2nxgcfiy79b0vs"; depends=[plyr shiny]; broken = true; }; - dsims = derive2 { name="dsims"; version="1.0.1"; sha256="15yy3kivg26pmzaby0kaj4vq4526jrnvpiqj24bcvh7sskv8myif"; depends=[Distance dssd ggplot2 gridExtra mgcv mrds rgeos rlang rstudioapi sf sp]; broken = true; }; - dssd = derive2 { name="dssd"; version="1.0.0"; sha256="1svzd3d32lw6qvrpkgnidyrpq1903y2a1xplyq51gf2niwjyaxa0"; depends=[ggplot2 rgdal sf]; broken = true; }; dtree = derive2 { name="dtree"; version="0.4.2"; sha256="1cpv0pyf515610djxzfw1c83p3alk5a93clg4x9gk7a7qy4cyhr1"; depends=[caret evtree party partykit rpart]; broken = true; }; + dtwSat = derive2 { name="dtwSat"; version="1.0.0"; sha256="04bmic5qxz8ka6gn7npixcgky1vyf4jaq48i6h4cc34n9wwhzi4a"; depends=[ggplot2 mgcv proxy sf stars tidyr twdtw]; broken = true; }; dummies = derive2 { name="dummies"; version="1.5.6"; sha256="01f84crqx17xd6xy55qxlvsj3knm8lhw7jl26p2rh2w3y0nvqlbm"; depends=[]; broken = true; }; dupiR = derive2 { name="dupiR"; version="1.2"; sha256="0p649yw7iz6hnp7rqa2gk3dqkjbqx1f6fzpf1xh9088nbf3bhhz3"; depends=[plotrix]; broken = true; }; durmod = derive2 { name="durmod"; version="1.1-4"; sha256="0d721sbxjfh00gpxd4hj8iq04awfd0pcd6bw8cv7kny21l2f3w44"; depends=[data_table mvtnorm nloptr numDeriv Rcpp]; broken = true; }; - dwctaxon = derive2 { name="dwctaxon"; version="2.0.2"; sha256="1w6mdqr76gaiwj5bdrk6w544525zf0j0s1qqpszlfxymwqyax6nl"; depends=[assertthat digest dplyr glue purrr rlang settings stringr tibble]; broken = true; }; + dycdtools = derive2 { name="dycdtools"; version="0.4.3"; sha256="06hm00mfkkg5yxpf30xb4i21bna0hpa0g86vx9qz9vf7f7cvdwjx"; depends=[dplyr ggplot2 lubridate ncdf4 R_utils RColorBrewer tidyr]; broken = true; }; dynamicGraph = derive2 { name="dynamicGraph"; version="0.2.2.6"; sha256="1xnsp8mr3is4yyn0pyrvqhl893gdx2y1zv8d2d55aah2xbfk0fjj"; depends=[ggm]; broken = true; }; dynamichazard = derive2 { name="dynamichazard"; version="1.0.2"; sha256="1khfy2fhvzgp165arj1yqvqi5p6lg94sxikwp5s5dxnsgzny00xm"; depends=[boot Rcpp RcppArmadillo survival]; broken = true; }; dynatopmodel = derive2 { name="dynatopmodel"; version="1.2.1"; sha256="0lpfhj69bvagqzzg2kjqvn9xx8f93ii34flrrns20z3bxla6gds9"; depends=[deSolve lubridate maptools raster rgdal rgeos sp topmodel xts zoo]; broken = true; }; dynfeature = derive2 { name="dynfeature"; version="1.0.1"; sha256="0qwz7a9gdclz1yp596pj14wkydvb6gzcm565m6vc7sargwbk85d6"; depends=[dplyr dynutils dynwrap purrr ranger reshape2 testthat tibble]; broken = true; }; dynia = derive2 { name="dynia"; version="0.2"; sha256="1swip4kqjln3wsa9xl0g92zklqafarva923nw7s44g4pjdy73d5l"; depends=[]; broken = true; }; dynplot = derive2 { name="dynplot"; version="1.1.2"; sha256="09psc13xfhalk1m41kkwj2ah2dcqkwyzc09kfi1sjpj6nyylcvdn"; depends=[assertthat dplyr dyndimred dynfeature dynutils dynwrap GA ggforce ggplot2 ggraph ggrepel igraph MASS patchwork purrr reshape2 tibble tidygraph tidyr vipor]; broken = true; }; + dynsbm = derive2 { name="dynsbm"; version="0.7"; sha256="169yk539vynjbn89q6vs3l3fx7hk8n3i1msa4jws5vypgljc2rir"; depends=[RColorBrewer Rcpp]; broken = true; }; eMLEloglin = derive2 { name="eMLEloglin"; version="1.0.1"; sha256="087zw48lykls2jcsmpqd5jkrlpr0j423snp00liszjhdpdh59saq"; depends=[lpSolveAPI]; broken = true; }; - earthtide = derive2 { name="earthtide"; version="0.1.0"; sha256="06js9czzp5l83cdxmpjc7kkcvyadm9ic3zwd68kic21gcmcfaw0k"; depends=[BH R6 Rcpp RcppEigen RcppThread]; broken = true; }; - easyalluvial = derive2 { name="easyalluvial"; version="0.3.1"; sha256="10nd1jay913jpipy0q2zl7f7pihqynpxmmccbg657jzcgnzva1rv"; depends=[dplyr forcats ggalluvial ggplot2 ggridges gridExtra magrittr progress progressr purrr randomForest RColorBrewer recipes rlang stringr tibble tidyr]; broken = true; }; - easybgm = derive2 { name="easybgm"; version="0.1.0"; sha256="077j8l04cix4vh2jzvmrzmq17j36npsz68qig7gvfvf9lcm3aq1q"; depends=[BDgraph BGGM bgms dplyr ggplot2 HDInterval igraph qgraph]; broken = true; }; ebSNP = derive2 { name="ebSNP"; version="1.0"; sha256="0x3ijwg4yycsfy6jch1zvakzfvdgpiq8i7sqdp5assb8z1823w0b"; depends=[]; broken = true; }; - ebmstate = derive2 { name="ebmstate"; version="0.1.3"; sha256="04pg9yqbjrq10ai13c8zm8sy7spnf96ldbbql7qysjl91ljgrqz6"; depends=[HDInterval mstate Rcpp survival]; broken = true; }; ecap = derive2 { name="ecap"; version="0.1.2"; sha256="0d260y4phh1a7zlj2lgvdf7xd2z14l9djv7nrwa84pwqqyijc7rl"; depends=[ggplot2 quadprog]; broken = true; }; + ecd = derive2 { name="ecd"; version="0.9.2.4"; sha256="0cdfdbkjjxs78bvvy5zrax0qgcc5fzhlxl3wqapfxigf5xlxlavh"; depends=[digest ggplot2 gridExtra gsl moments optimx polynom Rmpfr RSQLite stabledist xtable xts yaml zoo]; broken = true; }; edbuildr = derive2 { name="edbuildr"; version="0.3.0"; sha256="19fsk8qkxyzncn614fy6hmmxpv1dikqghs101hbzd0g0a511xk8f"; depends=[dplyr magrittr openxlsx scales stringr tidyselect]; broken = true; }; edcc = derive2 { name="edcc"; version="1.0-0"; sha256="036fi6mnn9480hkb378xb5jilkfvdydjmkyw4mcc9s1lz195f62w"; depends=[spc]; broken = true; }; edci = derive2 { name="edci"; version="1.1-3"; sha256="1f1ry2adfranfrrvf1gkiy58pra3z6bray4v5fgr0z9n1ybcaff0"; depends=[]; broken = true; }; @@ -21394,6 +21714,7 @@ in with self; { endogMNP = derive2 { name="endogMNP"; version="0.2-1"; sha256="0maxcp321ngbxrg0i23nlwhj849v771xahh53367x928ss4f8v7i"; depends=[]; broken = true; }; engsoccerdata = derive2 { name="engsoccerdata"; version="0.1.5"; sha256="06fdgjgnk4lwshrkd0jad411x5nz9sxlri9fdhxrf2dr2hik4l8q"; depends=[dplyr magrittr tidyr]; broken = true; }; ensModelVis = derive2 { name="ensModelVis"; version="0.1.0"; sha256="06nhk616h32225p65ms4k9ia5qwd7kngpa4z6hxzn9nzmiirma60"; depends=[dplyr forcats ggplot2 magrittr rlang tidyr]; broken = true; }; + ensemblQueryR = derive2 { name="ensemblQueryR"; version="0.1.0"; sha256="0yz7c8lvy9hivm60brx72iph36jrx5d11i9fbdhbl2l3gi4w0fbd"; depends=[dplyr httr jsonlite magrittr purrr rlang tibble tidyr vroom xml2]; broken = true; }; entcn = derive2 { name="entcn"; version="1.0.0"; sha256="0zwhhjrc24d3hr9494p9ayxlkd0g6jml9raxwv59mpvpprrasdws"; depends=[RYoudaoTranslate stringr]; broken = true; }; enviPick = derive2 { name="enviPick"; version="1.5"; sha256="04q6zwqq2ip8b8h2n1jpgx1bzcvi7lazljs0806wiakbc79x232p"; depends=[readMzXmlData shiny]; broken = true; }; envlpaster = derive2 { name="envlpaster"; version="0.1-2"; sha256="11a5n40k1ln5gxxvwq1vh4dhmhifhlm89hkhf36qnhj4bjh3v3y0"; depends=[aster aster2 caTools MASS]; broken = true; }; @@ -21401,12 +21722,10 @@ in with self; { epi2me2r = derive2 { name="epi2me2r"; version="0.1.0"; sha256="1zsh9fhwjjh9y98s7hdhchbfdjm5xxqqz1qinq55x9yv11b1xfwy"; depends=[Biobase data_table metagenomeSeq phyloseq taxonomizr]; broken = true; }; epiGWAS = derive2 { name="epiGWAS"; version="1.0.2"; sha256="0jqblfmz02za3b2pgi15379bzgh98yv5kyv8kh0lkzhrmpgph2zj"; depends=[DescTools glmnet matrixStats SNPknock]; broken = true; }; epidemia = derive2 { name="epidemia"; version="1.0.0"; sha256="1lfbibcpm58a05wrikwfzxkfqxw6yk41b1q07wpchxpz1lfv2v5y"; depends=[bayesplot BH dplyr ggplot2 hrbrthemes lme4 magrittr Matrix Rcpp RcppEigen Rdpack rlang rstan rstanarm rstantools scales StanHeaders tidyr zoo]; broken = true; }; - epiphy = derive2 { name="epiphy"; version="0.3.4"; sha256="04wsppjycnrzrml3zxrpr0xdxxas3hj8rskiivx5vfmfjpwipq4r"; depends=[ggplot2 msm pbapply Rcpp transport]; broken = true; }; episplineDensity = derive2 { name="episplineDensity"; version="0.0-1"; sha256="0nmh97xajnnh54i04yq8fdici4n5xvcbpdbjdbz79483gnils4vn"; depends=[nloptr pracma]; broken = true; }; epistasis = derive2 { name="epistasis"; version="0.0.1-1"; sha256="0dfh26bs72i01hpxpgpgyiwpmg9mjpib8zynhc5ssxa0skm518wz"; depends=[glasso igraph Matrix tmvtnorm]; broken = true; }; epitopR = derive2 { name="epitopR"; version="0.1.2"; sha256="0bqj62jl48pql7dbmq96fgs0pza3krycd9i6fj0sjz7yxg4i46q6"; depends=[Biostrings dplyr fs here httr janitor purrr readr seqinr stringr tibble tidyverse]; broken = true; }; epitopeR = derive2 { name="epitopeR"; version="1.0.0"; sha256="0zp23cm43j9mm1fvz65y3xgjy0bm2s5h02y046zx2akx24sh3fjh"; depends=[Biostrings dplyr fs httr janitor purrr readr rlang seqinr stringr tibble tidyverse]; broken = true; }; - epitweetr = derive2 { name="epitweetr"; version="2.2.13"; sha256="0vv4y1c8nfcdv2hmv6vvi5jh6ykrbvna2p2gwpcl9q4j7b4wp9jc"; depends=[bit64 crul curl dplyr DT emayili future ggplot2 htmltools httpuv httr janitor jsonlite keyring knitr lifecycle magrittr openxlsx plotly plyr processx readxl rgdal rlang rmarkdown rnaturalearthdata rtweet shiny sp stringr tibble tidytext tidyverse tokenizers xml2 xtable]; broken = true; }; eqs2lavaan = derive2 { name="eqs2lavaan"; version="3.0"; sha256="1lj6jwkfd84h9ldb6l74lrx2pnsl1c0d7mnrcrjkska87djb2nzd"; depends=[lavaan stringr]; broken = true; }; eqtl = derive2 { name="eqtl"; version="1.1-7"; sha256="0xfr8344irhzyxs9flnqn4avk3iv1scqhzac5c2ppmzqhb398azr"; depends=[qtl]; broken = true; }; equatiomatic = derive2 { name="equatiomatic"; version="0.3.1"; sha256="0gy1wy10zc7h7h1s0hwd545iv4af5x2g8pqsgzyryydd6426g2gj"; depends=[broom broom_mixed knitr shiny]; broken = true; }; @@ -21509,7 +21828,7 @@ in with self; { foster = derive2 { name="foster"; version="0.1.1"; sha256="1gkn3mgxsq3p7nazw80z61yhc1dqxhjvd667xklpjka4rrk2am8p"; depends=[caret data_table dplyr randomForest raster reshape2 rgdal RStoolbox sp spatstat spatstat_geom trend yaImpute]; broken = true; }; fpca = derive2 { name="fpca"; version="0.2-1"; sha256="13b102026xlfb7c2rb3xsqsymm7xpmaxppaafjkb5dx0b1lz0jrc"; depends=[sm]; broken = true; }; fpmoutliers = derive2 { name="fpmoutliers"; version="0.1.0"; sha256="108bp3smk9jnckd5237xly4ywmal03rq1kidq5z61l6zrhc3yfh9"; depends=[arules doParallel foreach Matrix pmml pryr R_utils XML]; broken = true; }; - frailtypack = derive2 { name="frailtypack"; version="3.5.0"; sha256="0yw08x6ss1af19zrm29i509gkjwmphg1hidxdfwkfgvrvcl4fnxz"; depends=[boot doBy MASS nlme rootSolve shiny statmod survC1 survival]; broken = true; }; + fqar = derive2 { name="fqar"; version="0.4.3"; sha256="18llpbdjwscnbx9n94nc5x42mr3vsbf35s3br7w30s8mf48c3s3y"; depends=[dplyr ggplot2 httr jsonlite memoise rlang tidyr tidyselect]; broken = true; }; frambgrowth = derive2 { name="frambgrowth"; version="0.1.0"; sha256="1xmy1zxp7aa2n8frlxhn1bl41zda1jldvvxb3q41yam3pslc8m1q"; depends=[]; broken = true; }; freesurfer = derive2 { name="freesurfer"; version="1.6.8"; sha256="0ks6ms5vp38pykcg66w960nmfgq383iprrbbzw5dlx9xnrx4yhbh"; depends=[neurobase R_utils reshape2]; broken = true; }; frm = derive2 { name="frm"; version="1.2.2"; sha256="1dl0vca9r2dams99sc13pfpi0b3yb02x59f4c1jz07zz005c8l23"; depends=[]; broken = true; }; @@ -21526,6 +21845,7 @@ in with self; { functClust = derive2 { name="functClust"; version="0.1.6"; sha256="0mdfxvrx3wk497a9bbkwnzbm6hm2s4wqs3h09m3hj48ybpqmhz9i"; depends=[clusterCrit multcompView]; broken = true; }; futile_paradigm = derive2 { name="futile.paradigm"; version="2.0.4"; sha256="14xsp1mgwhsawwmswqq81bv6jfz2z6ilr6pmnkx8cblyrl2nwh0v"; depends=[futile_options RUnit]; broken = true; }; fuzzyFDR = derive2 { name="fuzzyFDR"; version="1.0"; sha256="0zd8i9did0d9gp42xjmwrccm32glabvvy08kl8phhwb1yaq53h7w"; depends=[]; broken = true; }; + fwi_fbp = derive2 { name="fwi.fbp"; version="1.7"; sha256="1wk9cr0kk6zkbf111bv87n7b1wwx1qrsbjxydvbjvy8bgz0nfa62"; depends=[]; broken = true; }; g2f = derive2 { name="g2f"; version="0.2"; sha256="1jsmiv6v8ilpxg1k1npcgqa467hpyw7mzh5m8dp7bxar4j5npsp4"; depends=[KEGGREST minval sybil]; broken = true; }; gDefrag = derive2 { name="gDefrag"; version="0.3"; sha256="016vpj03drygxsa06jin225rfgjvjm938x65990ms15xcwrgv8nb"; depends=[igraph maptools rgdal rgeos sp]; broken = true; }; gPdtest = derive2 { name="gPdtest"; version="0.4"; sha256="00dlhnklfg2yp4hp7yjgr2nfswv22c007xq1mxdbkll62zgd94mq"; depends=[]; broken = true; }; @@ -21537,9 +21857,9 @@ in with self; { gamlss_ggplots = derive2 { name="gamlss.ggplots"; version="2.1-2"; sha256="0b205awv7abl1jv2gg2ki2xdz91i0xikvixgygwjmwz6vri0p7zx"; depends=[ellipse foreach gamlss gamlss_dist gamlss_foreach gamlss_inf ggplot2 ggridges mgcv]; broken = true; }; gamlss_nl = derive2 { name="gamlss.nl"; version="4.1-0"; sha256="083l5lsb0csxcp4vffvdv2nr7jk3s2gkcavx66m8inzw16j7xilz"; depends=[gamlss survival]; broken = true; }; gamm4_test = derive2 { name="gamm4.test"; version="0.1.0"; sha256="0ab6rksr88fsv6whp6cxyshpv5ixmf9lw51cl3rzk870r8q326wg"; depends=[doParallel foreach gamm4 Matrix mgcv plotly RColorBrewer]; broken = true; }; + gamma = derive2 { name="gamma"; version="1.0.4"; sha256="02qdv1kzz1pw07zksxl97ra4wd15xgdzfaq9qfwfcci67xmx88ap"; depends=[ggplot2 IsoplotR rlang rxylib]; broken = true; }; ganalytics = derive2 { name="ganalytics"; version="0.10.7"; sha256="03jf7325cgg5p6lzcrzzzx0b40vf3l5vhw95lih098kpmlr1zadf"; depends=[assertthat googleAnalyticsR httpuv httr jsonlite lazyeval lubridate plyr R6 rvest scales selectr stringr tibble XML xml2]; broken = true; }; garchmodels = derive2 { name="garchmodels"; version="0.1.1"; sha256="1nmhsxhfbp7jn85jwnhm4p5kl0jc5n1bjwwwpia774ycr6krazwn"; depends=[dials dplyr magrittr parsnip purrr rlang rmgarch rugarch stringr tibble tidyr]; broken = true; }; - gatoRs = derive2 { name="gatoRs"; version="1.0.0"; sha256="1637mx80fr89w205qzp47fjgh6ms5r173c6schjh30vyf9xdljm6"; depends=[CoordinateCleaner dplyr leaflet magrittr parsedate raster rgbif ridigbio spatstat_geom spThin stringr]; broken = true; }; gazepath = derive2 { name="gazepath"; version="1.3"; sha256="1sv0vdwzmvpnj2k8lphnf4y12fi5md0j2725fjkv1n7a3dkd6faa"; depends=[jpeg scales shiny sp zoo]; broken = true; }; gdalUtils = derive2 { name="gdalUtils"; version="2.0.3.2"; sha256="0krapdy50nd5dvcdflz39dzxpig3zklng3hgxavqg2nvwazalvsc"; depends=[foreach R_utils raster rgdal sp]; broken = true; }; gdmp = derive2 { name="gdmp"; version="0.2.0"; sha256="0fy8x9l6swrb78apwq9d9msz2y8dkfd2fkyp1pkmzxwdb85lmcdm"; depends=[]; broken = true; }; @@ -21553,7 +21873,7 @@ in with self; { genius = derive2 { name="genius"; version="2.2.3"; sha256="03j6yry39nn8bccrnwjx1y36rdw167gjlkzl56g5lqwbrgx26bqy"; depends=[dplyr magrittr purrr reshape2 rlang rvest stringr tibble tidyr tidytext]; broken = true; }; genomeplot = derive2 { name="genomeplot"; version="1.0"; sha256="15v01ngxq7kxav1bhw1mvqradrmvwsad5xh9l5skivb5smh9795w"; depends=[ggplot2]; broken = true; }; genotypeR = derive2 { name="genotypeR"; version="0.0.1.8"; sha256="1kwzjn6hrnfizs44cz4a8qa4mdhdzqssc4axx0s6vngmkmsrffig"; depends=[colorspace doBy plyr reshape2 zoo]; broken = true; }; - geoGAM = derive2 { name="geoGAM"; version="0.1-2"; sha256="0q09pk2npn4hjymklwfrhz2ybmjpcb6kvqkpn9l3a6cdjgk6bkmj"; depends=[grpreg MASS mboost mgcv]; broken = true; }; + geoAr = derive2 { name="geoAr"; version="0.0.1.4.2"; sha256="1wzhlccscpdzlyx6w9hh7srgrqc3dw56wd99pcrhlqsx0w6b48n0"; depends=[assertthat attempt curl dplyr glue httr leaflet magrittr sf stringr tidyr]; broken = true; }; geodetector = derive2 { name="geodetector"; version="1.0-4"; sha256="00zyx68jjl4mldah8mxfvwvv5yfkd4f1s2rlx6fsw6h8y2cwzj3l"; depends=[maptools rgdal rgeos sp]; broken = true; }; geofabrik = derive2 { name="geofabrik"; version="0.1.0"; sha256="0k92gmivccw3kbgkb9bjw7pxc4zc3zdj35x0cbzmjq0k3qxq8ad0"; depends=[]; broken = true; }; geojsonlint = derive2 { name="geojsonlint"; version="0.4.0"; sha256="0l6xlf6l9shyvdd2ghkhcgbkxpmycapfpxakzbvd92j1x8dmr9az"; depends=[crul jsonlite jsonvalidate V8]; broken = true; }; @@ -21576,15 +21896,18 @@ in with self; { ggasym = derive2 { name="ggasym"; version="0.1.6"; sha256="1vgsqq2m4w5clmf27mmj6jqn2s8m1izz3gj2bxqpmdcvzf5vxkgr"; depends=[dplyr ggplot2 magrittr purrr rlang scales stringr tibble tidyr]; broken = true; }; ggbraid = derive2 { name="ggbraid"; version="0.2.2"; sha256="1y5yskhc63cprvdk1j7nhz8mz9i36qs8sqlr9h09yi172mp6ignn"; depends=[ggplot2]; broken = true; }; ggconf = derive2 { name="ggconf"; version="0.1.3"; sha256="0g4xasqhdiqfqahakv6p5npl56f2iakx4bnc9v9zcjr077kdda4n"; depends=[ggplot2 rly]; broken = true; }; + ggcoverage = derive2 { name="ggcoverage"; version="0.7.1"; sha256="088gyc6054d8xx3k3pg5i40cnvyryyq4k6rn214li0yslj3fphyi"; depends=[Biostrings BSgenome dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggbio ggh4x ggplot2 ggrepel IRanges magrittr patchwork RColorBrewer reshape2 rlang Rsamtools rtracklayer S4Vectors scales seqinr]; broken = true; }; + ggenealogy = derive2 { name="ggenealogy"; version="1.0.1"; sha256="19six9ln1yaqv268abm9qvb61nl8zdz3gghwr8hmwsa94xwhzhkq"; depends=[ggplot2 igraph plotly plyr reshape2 tibble]; broken = true; }; ggfacto = derive2 { name="ggfacto"; version="0.2.2"; sha256="0rxqkhmnzpljcdbg5wzmyq5fivd3d2h1903w8d1cblq7xw969xi0"; depends=[dplyr FactoMineR forcats ggiraph ggplot2 ggrepel gridExtra htmlwidgets kableExtra magrittr purrr rlang stringi stringr tabxplor tibble tidyr tidyselect vctrs widgetframe]; broken = true; }; ggfan = derive2 { name="ggfan"; version="0.1.3"; sha256="1p3hbznpsaznlk0lnjyazc130www0p5919qplg3kspng7qh8p22w"; depends=[colorspace dplyr ggplot2 rstan]; broken = true; }; ggguitar = derive2 { name="ggguitar"; version="0.1.1"; sha256="1lmfs54h91gzcxin37v4flkywbq3fs648mm1h9ak03xlj5nagzsi"; depends=[dplyr ggplot2 gridExtra lazyeval readr tibble]; broken = true; }; gglogo = derive2 { name="gglogo"; version="0.1.5"; sha256="08wg0svcksdzchp6bdllmsnklxia3d0ygqwzgmqb2sga8nbkf5hl"; depends=[dplyr ggplot2 jpeg knitr magrittr plyr purrr reshape2 rlang tidyr]; broken = true; }; ggloop = derive2 { name="ggloop"; version="0.1.0"; sha256="0jpbgb16jfsv557zvishln98y7nd6p1ryp6hxkrkmhp9p35vzvc0"; depends=[assertthat ggplot2 lazyeval magrittr plyr]; broken = true; }; + ggmotif = derive2 { name="ggmotif"; version="0.2.1"; sha256="1pqkl5zw4v6b81nbxcrpz44sjs4j65iw23j9xiy4d7yqj1bx7604"; depends=[ape cowplot data_table dplyr ggplot2 ggsci ggtree magrittr memes patchwork stringr tidyverse treeio universalmotif XML]; broken = true; }; ggpacman = derive2 { name="ggpacman"; version="0.1.0"; sha256="1040d6aciyllrpszh7l7y55fw4dx8cya2yvj0x4i2fibvygz83p6"; depends=[dplyr gganimate ggforce ggplot2 magrittr purrr rlang tidyr]; broken = true; }; + ggseqlogo = derive2 { name="ggseqlogo"; version="0.1"; sha256="13q6kcpxrqxqbji889fx63p0nsi08lk5yymkchig75r5k1d18ky1"; depends=[ggplot2]; broken = true; }; ggsn = derive2 { name="ggsn"; version="0.5.0"; sha256="04vnap83w06hbqqi5kgxmrdb3a13n5mcdk5lllymv6nrzvl84f2x"; depends=[ggmap ggplot2 maptools png sf]; broken = true; }; ggvoronoi = derive2 { name="ggvoronoi"; version="0.8.5"; sha256="0q02r0nql64am6ixjq59fjn2kzsj2is22ys1j1rzscwkh9f6f17m"; depends=[deldir ggplot2 raster rgeos sp]; broken = true; }; - ghcm = derive2 { name="ghcm"; version="3.0.0"; sha256="0byzi0q3amz7q6if0y54mk3wac0pycci9ypagr65p8rlhx04gqv3"; depends=[CompQuadForm MASS Rcpp refund]; broken = true; }; ghee = derive2 { name="ghee"; version="0.1.0"; sha256="0b3czx2ibi5p8xl7i36zxnab032vrkh5bv204r7wgg1xpx8pdlra"; depends=[gh jsonlite]; broken = true; }; gibbs_met = derive2 { name="gibbs.met"; version="1.1-3"; sha256="1yb5n8rkphsnxqn8rv8i54pgycv9p7x1xhinx4l5wzrds3xhf2dc"; depends=[]; broken = true; }; giedata = derive2 { name="giedata"; version="0.1.1"; sha256="19sr8phsay7bpqrbh776ms0aw9xgiv0x9knmn88ydzpkcdcd1z9j"; depends=[curl dplyr httr lubridate magrittr purrr]; broken = true; }; @@ -21593,6 +21916,7 @@ in with self; { glacierSMBM = derive2 { name="glacierSMBM"; version="0.1"; sha256="0117fzz2b1lccs0kkwz59w2yysi72j54yvz7373pz11w7rjds84f"; depends=[raster sp udunits2]; broken = true; }; glmdisc = derive2 { name="glmdisc"; version="0.6"; sha256="031rz3s5d7hz9fzmsj7aqhzwrn05rnfvk9292k2r0qpr6k02mk3b"; depends=[caret dplyr gam magrittr MASS nnet Rcpp RcppEigen RcppNumerical]; broken = true; }; glmdm = derive2 { name="glmdm"; version="2.60"; sha256="09vljki24fccqkvxkmg2i6a8pxqhfwm155b41m2q51lqaq29bfw7"; depends=[]; broken = true; }; + glmmrOptim = derive2 { name="glmmrOptim"; version="0.3.3"; sha256="0i8b9pphsiy9bs43milkn1b2b7a3p2g0fci7l6vr3xp79bbkgk8y"; depends=[BH digest glmmrBase Matrix Rcpp RcppEigen RcppProgress rminqa SparseChol]; broken = true; }; glmmsr = derive2 { name="glmmsr"; version="0.2.3"; sha256="1fbg5zji0xjr9q1yc6phsp37nsrj7nfs8yiri0j9s84wzgwjili1"; depends=[BH lme4 Matrix numDeriv R6 Rcpp RcppEigen]; broken = true; }; globalGSA = derive2 { name="globalGSA"; version="1.0"; sha256="1f3xv03m6g2p725ff0xjhvn2xcfm7r7flyrba080i4ldy6fd8jg8"; depends=[]; broken = true; }; glrt = derive2 { name="glrt"; version="2.0"; sha256="0p2b0digndvnn396ynv56cdg436n3ll7pxkb81rs3dhwbyqyc948"; depends=[survival]; broken = true; }; @@ -21608,18 +21932,18 @@ in with self; { gptk = derive2 { name="gptk"; version="1.08"; sha256="0fk6c8f8fni4y2n2cbfwywlfyz74xlb8lx25wajsxr2v4x74pa7l"; depends=[fields Matrix]; broken = true; }; gradDescent = derive2 { name="gradDescent"; version="3.0"; sha256="1jxgvnjw9qk5bkb0fw4kyks4vb9d1933jn79ry0w6956mq2xbb79"; depends=[]; broken = true; }; grainchanger = derive2 { name="grainchanger"; version="0.3.2"; sha256="1anq9gmbf9cjh6f9q2h7f65j220f56rmb59zhp5j2d26bs7dbnz8"; depends=[checkmate furrr raster sf usethis]; broken = true; }; - granovaGG = derive2 { name="granovaGG"; version="1.4.0"; sha256="0khqlqc6jg9cpdq06g6jlpfjcw3m6rj40ipljfai8g1630ril6q4"; depends=[ggplot2 gridExtra plyr RColorBrewer reshape2]; broken = true; }; graphscan = derive2 { name="graphscan"; version="1.1.1"; sha256="1dgjb0grdymhimdgwnddjcivgy2i9r1i1nni4v9mx0447skcahk9"; depends=[ape rgl snowfall sp]; broken = true; }; + graphx = derive2 { name="graphx"; version="1.0"; sha256="1k7vq0j58yskmaqknpkhccrc5n1hh8p2fsw7419r7k6a2c3syj8a"; depends=[cubature docore jpeg magicaxis MASS plotrix png pracma raster sp]; broken = true; }; gremes = derive2 { name="gremes"; version="0.1.1"; sha256="1i3j23ssx0grkzq1qf4naiqrfd753m992pqhxy5y7c805acm77mj"; depends=[abind copula igraph mev mvtnorm quadprog]; broken = true; }; + gren = derive2 { name="gren"; version="0.0.1"; sha256="1wb5wwdjxi7q36md7xzmbw5lrggcgghkz3pmxipjpxw8kfv804xp"; depends=[glmnet Iso pROC Rcpp RcppArmadillo]; broken = true; }; greyzoneSurv = derive2 { name="greyzoneSurv"; version="1.0"; sha256="115i0d4fy4p4g4vd419hj9f23hi8cbiyfilgpgmag91ilr1xpcdp"; depends=[Hmisc survAUC survival]; broken = true; }; groupRemMap = derive2 { name="groupRemMap"; version="0.1-0"; sha256="1bfp746j0dx7kk44nyjqmimvgw14par9ayvqxnzldc05qsazjdwx"; depends=[]; broken = true; }; - groupTesting = derive2 { name="groupTesting"; version="1.0.0"; sha256="00jy1gw6whslmfcqic99hmbxh2z75rj14cjzrm5mnpcajn37s66j"; depends=[pracma]; broken = true; }; grouped = derive2 { name="grouped"; version="0.6-0"; sha256="1glxgacpwk7yjbkwg5ci6bmb2il6hf5zhydwi5bbq6hc032m9976"; depends=[MASS]; broken = true; }; groupsubsetselection = derive2 { name="groupsubsetselection"; version="1.0.3"; sha256="118cj5xc8nbq4fs2gbzg1nhynixaflbl0si77gyy4ybw0drsz4nj"; depends=[]; broken = true; }; gset = derive2 { name="gset"; version="1.1.0"; sha256="1gingqw6la8n7mnl47wpz9sicxca4zi2m8p35n6cnihrniibhajc"; depends=[Hmisc MCMCpack mvtnorm]; broken = true; }; gtcorr = derive2 { name="gtcorr"; version="0.2-1"; sha256="1n56zmyv58jwr95p453jb86j82pdnq57gfc8m15jndjc9p31zl0m"; depends=[]; broken = true; }; + gtop = derive2 { name="gtop"; version="0.2.0"; sha256="1nvvbf181x0miw3q0r2g0nklz29ljdsd07cazaajfls7pmhi0xw9"; depends=[hts lassoshooting quadprog]; broken = true; }; guf = derive2 { name="guf"; version="1.0.2"; sha256="1dfmja2da211pcid4hr7x9q0sgz37756rpykm1ax862avdl8hsmc"; depends=[]; broken = true; }; - gutenbergr = derive2 { name="gutenbergr"; version="0.2.3"; sha256="1jffisx1sycxw3f09n13jnzn7h47zj34g82n6vww6gwliznfsvvz"; depends=[cli dplyr glue lazyeval magrittr purrr readr stringr urltools]; broken = true; }; gvcm_cat = derive2 { name="gvcm.cat"; version="1.9"; sha256="1kwfcmnl1ivv1lh3zxccwls2xfyx3l8v71ngc0bg6441i81d4xp5"; depends=[MASS Matrix mgcv]; broken = true; }; gwdegree = derive2 { name="gwdegree"; version="0.1.1"; sha256="0p06hjp7vay83kbpqsgfr1d8z3ayv483rxbv86fdka94gvi1sjyc"; depends=[dplyr ergm ggplot2 gtools magrittr network scales shiny shinydashboard sna tidyr]; broken = true; }; gwer = derive2 { name="gwer"; version="3.0"; sha256="0jiq5v37mbn6y7vl5gs8qahb796jrfqj0m54sd38vim8yhhjwfy8"; depends=[assertthat glogis GWmodel maptools Matrix sp spData spdep spgwr]; broken = true; }; @@ -21668,12 +21992,12 @@ in with self; { hsicCCA = derive2 { name="hsicCCA"; version="1.0"; sha256="1d4lkjrihwhl3jrsj7250ccd90nfwpllyavc3mp15fhcy2jnjci8"; depends=[]; broken = true; }; hsm = derive2 { name="hsm"; version="0.2.0"; sha256="066shjikqrrkxpnra4zknax1a0sk5nx9ms1br58vwqqvqq479rym"; depends=[]; broken = true; }; hsmm = derive2 { name="hsmm"; version="0.4"; sha256="1fh8c5kfv4brygdq6bfkrhrhkm99mxl4ljb1mhp9nf2bjlla11mc"; depends=[mvtnorm]; broken = true; }; + htdp = derive2 { name="htdp"; version="0.1.4"; sha256="0w579qp0p544xryb5r08m1nhqf7rmgv9q0lyx6my4av62l70ka5w"; depends=[Rcpp]; broken = true; }; htmcglm = derive2 { name="htmcglm"; version="0.0.1"; sha256="04fcjrr2pgzhcrp9jx70a99fsgvqf0724vj3p43kp8dlk95839h4"; depends=[doBy Matrix mcglm sjmisc stringr]; broken = true; }; htmltab = derive2 { name="htmltab"; version="0.8.2"; sha256="09hnf339f3hzll7a0shq615h9d6f6xqrcv0c9iid6575m5qsallf"; depends=[httr XML]; broken = true; }; htmltidy = derive2 { name="htmltidy"; version="0.5.0"; sha256="1djkjff3750fm1sp54kf9cjvsqz2x7ia1ns12h5vqqcvwzfd0701"; depends=[htmltools htmlwidgets Rcpp XML xml2]; broken = true; }; htree = derive2 { name="htree"; version="2.0.0"; sha256="15bi5c2p4aghihp3k12s78447j2x9hbsaq56b5lc8jmd1vf0jdwb"; depends=[]; broken = true; }; hybridEnsemble = derive2 { name="hybridEnsemble"; version="1.7.9"; sha256="0rvaxvkf72g7ycjpw579kd88p7gyldxcnlvhxijyddvwyx7d7kcy"; depends=[ada AUC doParallel e1071 FNN foreach genalg GenSA glmnet kernelFactory NMOF nnet nnls pso quadprog randomForest reportr Rmalschains ROCR rotationForest rpart soma tabuSearch]; broken = true; }; - hyd1d = derive2 { name="hyd1d"; version="0.4.6"; sha256="0ikznysqbfx9rrxa87is3ycixf3q6fcvqqzih6d9khsqqz0xc5i4"; depends=[plotrix Rdpack RJSONIO]; broken = true; }; hydroApps = derive2 { name="hydroApps"; version="0.1-1"; sha256="1ycv7l2ywwnx2mgklg6rry7n24jyhi4spvp1xl345yvyn9kf15dz"; depends=[nsRFA]; broken = true; }; hydroGOF = derive2 { name="hydroGOF"; version="0.4-0"; sha256="0fw8b66k7gdkdjxgmdpp3lk9d8p0wmlvhq2rkcvajjb5wd09f43a"; depends=[hydroTSM xts zoo]; broken = true; }; hydroMOPSO = derive2 { name="hydroMOPSO"; version="0.1-3"; sha256="14yvsxzlzpisn5hqyqcq1fmqsbj96pqcgyhnj414mj366x6w5qxp"; depends=[hydroTSM lhs randtoolbox xts zoo]; broken = true; }; @@ -21681,10 +22005,12 @@ in with self; { hydroTSM = derive2 { name="hydroTSM"; version="0.6-0"; sha256="1msavd2k05apsky88zkk1l3c6y3v95fwhmr6xmwsap70bj25krsv"; depends=[automap e1071 gstat lattice maptools sp xts zoo]; broken = true; }; hydrorecipes = derive2 { name="hydrorecipes"; version="0.0.3"; sha256="0if79msr8rn1ylk36sqa7maynz20v4y6q7h6xiqijlbnikm7n502"; depends=[dplyr earthtide fftw generics Rcpp RcppArmadillo RcppParallel recipes rlang tibble tidyr]; broken = true; }; hydroscoper = derive2 { name="hydroscoper"; version="1.4.1"; sha256="0jhvjmhcprjdjg6a54ic2f4kxfanpgwzzrkyyiggmj5jjg9yfhfw"; depends=[jsonlite pingr readr stringi stringr tibble]; broken = true; }; + hyper_fit = derive2 { name="hyper.fit"; version="1.1.1"; sha256="1xibiydfkhzsw0yqfc0xfzj4yz8xyxqlvnfpyxg33v5fwp9wap3v"; depends=[LaplacesDemon magicaxis MASS rgl]; broken = true; }; hyperSMURF = derive2 { name="hyperSMURF"; version="2.0"; sha256="1aczsph6ax5xfd5rfvsd9bmgaq3j2f5f82fx8whrgbin0hxz19d8"; depends=[randomForest unbalanced]; broken = true; }; hyperbrick = derive2 { name="hyperbrick"; version="1.0"; sha256="1a6l6dlylqm1dxz573rz5zqxn1nk85hcbfdxk0qwkr7z3yzl13c8"; depends=[caTools dfoptim OpenImageR pbapply raster rgdal]; broken = true; }; hypothesestest = derive2 { name="hypothesestest"; version="1.0"; sha256="0g8sm386m1zm9i3900r62x83wb600cy8hqk7dlvbx6wcgrxg82sm"; depends=[]; broken = true; }; hzar = derive2 { name="hzar"; version="0.2-5"; sha256="000l4ki3hvznnhkxc5j422h5ifnsfqalv666j48yby1hsf1lc3kg"; depends=[coda foreach MCMCpack]; broken = true; }; + i2dash = derive2 { name="i2dash"; version="0.2.4"; sha256="0silwp4pasry7z1yjhzyw06xpa8021v9bkhinc73i7dzr720ld5v"; depends=[assertive_sets assertive_types flexdashboard glue htmltools knitr magrittr rmarkdown stringi stringr xfun ymlthis]; broken = true; }; iBATCGH = derive2 { name="iBATCGH"; version="1.3.1"; sha256="0xq4q4kc2f0whrxz1vmi2gca9pxqix2qm4sfkwbch85if2k8l8fj"; depends=[msm Rcpp RcppArmadillo]; broken = true; }; iCiteR = derive2 { name="iCiteR"; version="0.2.1"; sha256="0hbps2q5i7yj6zvqawlayhqqr5iv39yqc0xnk7fvra7rimzc1qid"; depends=[httr]; broken = true; }; iCluster = derive2 { name="iCluster"; version="2.1.0"; sha256="09j36xv87d382m5ijkhmp2mxaajc4k97cf9k1hb11ksk7fxdqz6r"; depends=[caTools gdata gplots gtools lattice]; broken = true; }; @@ -21697,7 +22023,6 @@ in with self; { ibeemd = derive2 { name="ibeemd"; version="1.0.1"; sha256="115z13q02gzixziknix2l53mi12zzg30ra9h35pv6qzrr11ra1ic"; depends=[deldir fields rgeos sp spdep]; broken = true; }; ic50 = derive2 { name="ic50"; version="1.4.2"; sha256="1a5ddmbdfr3ls132fvalbkh4yaawv9k58rgpy54s5qddrm6aas2s"; depends=[]; broken = true; }; icapca = derive2 { name="icapca"; version="1.1"; sha256="131gdrk8vsbac0krmsryvsp21bn9hzxqxq847zn16cxjf6y5i3xb"; depends=[]; broken = true; }; - icensBKL = derive2 { name="icensBKL"; version="1.4"; sha256="1233cpwc24p01zjzqivl1ddvndhiqwiyjgr8v1aqd3wwz9qqfg6s"; depends=[gtools Icens MASS mvtnorm smoothSurv survival TeachingDemos]; broken = true; }; iconr = derive2 { name="iconr"; version="0.1.0"; sha256="17q7zj92yrj49slmrpwkxkjd0imrl9ildms9zj8qx7yc7dcv4c1s"; depends=[igraph magick rgdal]; broken = true; }; idbg = derive2 { name="idbg"; version="1.0"; sha256="1rxmj04hswxybrg7dfib3mjy8v8mdiv13zwbscp2q55z55hhf1m5"; depends=[]; broken = true; }; identity = derive2 { name="identity"; version="0.2-1"; sha256="1j5wb5cj5j49in2g6r1shdm4ri4cfzj22hpqazvcmq4dm291sdi9"; depends=[]; broken = true; }; @@ -21708,18 +22033,21 @@ in with self; { iilasso = derive2 { name="iilasso"; version="0.0.2"; sha256="043m1n5840459zsknkb54801apb0a2cqfprncmj2wp235rbqj832"; depends=[BH Matrix Rcpp]; broken = true; }; ilc = derive2 { name="ilc"; version="1.0"; sha256="0hs0nxv7cd300mfxscgvcjag9f2igispcskfknb7sn7p8qvwr5ki"; depends=[date demography forecast rainbow survival]; broken = true; }; imfr = derive2 { name="imfr"; version="0.1.9.1"; sha256="1l1lvzvz9hsqwk60k2w8ry8mvgzj7wrd6ycfhgwv39xid9vk70g7"; depends=[dplyr httr jsonlite]; broken = true; }; + immunarch = derive2 { name="immunarch"; version="0.9.0"; sha256="1yjmr7n352xnkrw9pa122kb716y02bmjr6lw6413gn77bwkxnfpy"; depends=[airr ape circlize data_table doParallel dplyr dtplyr factoextra fpc ggalluvial ggplot2 ggpubr ggraph ggrepel glue igraph jsonlite magrittr MASS patchwork phangorn pheatmap plyr purrr Rcpp readr readxl reshape2 rlang rlist Rtsne scales shiny shinythemes stringdist stringi stringr tibble tidyr tidyselect UpSetR uuid]; broken = true; }; imputeMDR = derive2 { name="imputeMDR"; version="1.1.2"; sha256="0ds5a4wav9vb9z5nji8hv5l76310rd970xf702fd0ckx1sh6rgd7"; depends=[]; broken = true; }; imputeMissings = derive2 { name="imputeMissings"; version="0.0.3"; sha256="1dfhi235j1qz2mv89j92b903j5mdwlzisiyvvi9mmiacdj5ln89z"; depends=[randomForest]; broken = true; }; imputePSF = derive2 { name="imputePSF"; version="0.1.0"; sha256="0xfd2mybg0cbi3n35j28s4xq4iwr5rq4mqwgdqml7l2rlzidcwc8"; depends=[PSF]; broken = true; }; incadata = derive2 { name="incadata"; version="0.9.1"; sha256="0987zazkp3cxvk88i3yqb70s2i1cg108vc8wyhh2867s3rqdrpgh"; depends=[decoder rvest sweidnumbr xml2]; broken = true; }; independence = derive2 { name="independence"; version="1.0.1"; sha256="0yln5wd8m5fgh4h7k80vq22byf06k4d6574zxyqcig63hls7v568"; depends=[Rcpp]; broken = true; }; individual = derive2 { name="individual"; version="0.1.7"; sha256="0by56qwxdgrb8f1x8d1yv5alf22m375a6gjcr3i31hvzn53ncc6w"; depends=[R6 Rcpp testthat]; broken = true; }; + ineptR = derive2 { name="ineptR"; version="0.2.1"; sha256="1rdw5idqaq9h2bys67lmks0dkrvr1a0272nr52ylf0cpglafs3n4"; depends=[dplyr httr httr2 lifecycle magrittr progressr purrr readr stringr tibble tidyr]; broken = true; }; inference = derive2 { name="inference"; version="0.1.0"; sha256="0j92isfkbhk13yx2hd3a5dd7ikcbgjc04zisd1n5kmg6ajw2aj6r"; depends=[sandwich]; broken = true; }; informR = derive2 { name="informR"; version="1.0-5"; sha256="16pz47wlr1gr8z5hdnrjpczm967khqiqgdfiw15a0bby6qdvni2y"; depends=[abind relevent]; broken = true; }; infra = derive2 { name="infra"; version="0.1.2"; sha256="0jycnnmrrjq37lv67xbvh6p63d6l4vbgf3i1z9y7r75d6asspzn1"; depends=[]; broken = true; }; infutil = derive2 { name="infutil"; version="1.0"; sha256="02d0hfbkdqjj0lm1fzwwxy60831kbcjn2m4rfblpib0krkbpz72n"; depends=[ltm]; broken = true; }; inldata = derive2 { name="inldata"; version="1.0.3"; sha256="0iz3dlmaw6p81lj406nq4sg4qvl289mn95by10r3zrikf39l0jq2"; depends=[raster sp]; broken = true; }; inlmisc = derive2 { name="inlmisc"; version="0.5.5"; sha256="0d7yqbd7bqsk312g28pqgdpcpqd06abyra2inmnj8fkgpmv3wjf6"; depends=[checkmate data_table GA htmltools htmlwidgets igraph knitr leaflet raster rgdal rgeos rmarkdown scales sp tinytex webshot wordcloud2 xtable yaml]; broken = true; }; + ino = derive2 { name="ino"; version="1.0.2"; sha256="18pl1scg8lxz0x1r2ksvrlpr7qvwp88bxvwiz4j4w3if5w0i0qhk"; depends=[cli crayon doSNOW dplyr forcats foreach ggplot2 glue mvtnorm optimizeR reshape2 rlang scales]; broken = true; }; insiderTrades = derive2 { name="insiderTrades"; version="0.0.1"; sha256="1hz2jmghfihbn1dbrr38zlwa0s44gm84pjhhk0yfrnljg9mqf4qy"; depends=[magrittr RCurl stringr]; broken = true; }; insol = derive2 { name="insol"; version="1.2.2"; sha256="166kgxgzbh55y2qqya6c2si22x0v7asi70im054g6xxwc5187kh3"; depends=[raster]; broken = true; }; intdag = derive2 { name="intdag"; version="1.0.1"; sha256="0mb0a1ccc67clfa75b4hl901zdmx7fxw713c4ybx3i5wc2ldl8ph"; depends=[]; broken = true; }; @@ -21728,7 +22056,6 @@ in with self; { interacCircos = derive2 { name="interacCircos"; version="1.0.0"; sha256="1waj0saavvaw2qzhbwcj1k0a2dnmq7zbkdnmb93xj6j1lhfjhbdy"; depends=[htmlwidgets jsonlite plyr RColorBrewer]; broken = true; }; interferenceCI = derive2 { name="interferenceCI"; version="1.1"; sha256="19ky10nn6ygma6yy5h1krxx61aikh3yx5y39p68a944mz8f72vsn"; depends=[gtools]; broken = true; }; interplex = derive2 { name="interplex"; version="0.1.0"; sha256="04ylskk2i9pmidknz5wfwba87d710gycrw3p3d29nd2s433scrbk"; depends=[]; broken = true; }; - interpolation = derive2 { name="interpolation"; version="0.1.0"; sha256="12rxbpyi6hn2lijlxl3yaqp0fvxw3ipyk6x1hyl7dp3r8i5q4qy5"; depends=[BH Rcpp RcppCGAL]; broken = true; }; interventionalDBN = derive2 { name="interventionalDBN"; version="1.2.2"; sha256="0wpp4bfi22ncvl0vdivniwwvcqgnpifpgxb4g5jbyvr0z735cd9w"; depends=[]; broken = true; }; introgress = derive2 { name="introgress"; version="1.2.3"; sha256="1j527gf7pmfy5365p2j2jbxq0fb0xh2992hj4d7dxapn4psgmvsk"; depends=[genetics nnet RColorBrewer]; broken = true; }; intsurvbin = derive2 { name="intsurvbin"; version="0.0.4"; sha256="119zjn1agl2j4fj4yg1pq1sqskzw93xfzppmc5n1x8llmfbxkqsj"; depends=[mgcv MHadaptive msm mvtnorm tmvtnorm]; broken = true; }; @@ -21750,12 +22077,14 @@ in with self; { ivfixed = derive2 { name="ivfixed"; version="1.0"; sha256="0a26zrkvz0ffq4zxdx5vhr1nvsi9c15s6gvc1zy2pddjz31x2xi5"; depends=[Formula]; broken = true; }; ivpack = derive2 { name="ivpack"; version="1.2"; sha256="0cr5acjrn41d3q0b77hlg2jmsbf1msvys9gcavm1blsryg2bc03c"; depends=[AER lmtest sandwich]; broken = true; }; ivpanel = derive2 { name="ivpanel"; version="1.0"; sha256="0irjmkw3nnd8ssidvj23lr0hihlhd9acsbaznh88lknx53ijc2qv"; depends=[Formula]; broken = true; }; + ivregEX = derive2 { name="ivregEX"; version="1.0"; sha256="0zh3rqvhn8ald6lxv9kywy2v1p0nr9ijv6plhpbxc6k51zzsgyl8"; depends=[AER Formula lmtest sandwich]; broken = true; }; jSonarR = derive2 { name="jSonarR"; version="1.1.1"; sha256="054q3ly471xa64yyz2as6vkr440ip1y8n5wl6s3zbhqy3bqkdqif"; depends=[jsonlite RCurl]; broken = true; }; james_analysis = derive2 { name="james.analysis"; version="1.0.1"; sha256="1b2n4ds4ivfk564z87s2rxjl9j0y4drd3cmyv8jqpccmdvx1137d"; depends=[naturalsort rjson]; broken = true; }; jaod = derive2 { name="jaod"; version="0.3.0"; sha256="071j3xqk7gzsic1sk8v0pwmqv6pav0nj9vvbskss3l1gczy80dfr"; depends=[crul jsonlite tibble]; broken = true; }; japanmesh = derive2 { name="japanmesh"; version="0.1.1"; sha256="1p6kssz0q2zjx7yd4x7jf56n62nx4g8gmbc8v2din1mgks4rm614"; depends=[dplyr geosphere lifecycle magrittr purrr rlang sf stringr tibble tidyr units vctrs]; broken = true; }; jcolors = derive2 { name="jcolors"; version="0.0.4"; sha256="18dmjcrci0z1xy2kglrarzm0idr9g3nhbbw7f1ijls3i0piqdri6"; depends=[ggplot2 scales]; broken = true; }; jdx = derive2 { name="jdx"; version="0.1.4"; sha256="0jqf0nkdyv9g4rifzlkls0n64fdcma2yphwl478772jlgfmxm2jb"; depends=[rJava]; broken = true; }; + jgcricolors = derive2 { name="jgcricolors"; version="1.0.0"; sha256="1lg6yzqly5y2cf396b6rvfqplnfyz9v9ay2g4q9m110mng5ln96l"; depends=[ggplot2 knitr markdown RColorBrewer stringr]; broken = true; }; jjAnno = derive2 { name="jjAnno"; version="0.0.3"; sha256="1xqkkqzdalpzc9d9kibc7b2lfmpzxn84f9y8pl1wjs7ins4dhsck"; depends=[dplyr ggiraphExtra ggplot2 magick magrittr]; broken = true; }; jlsm = derive2 { name="jlsm"; version="0.1.0"; sha256="01wmm7555v31kbmy6lcv9j0rr0cav5vsyhl09l7zh0qm6m3ddw7p"; depends=[boot ellipse expm lvm4net MASS Matrix matrixcalc mvtnorm network pROC]; broken = true; }; joineRmeta = derive2 { name="joineRmeta"; version="0.1.2"; sha256="0lkj3rry8kvdcl3dxrkvnql8rl3fsgc4lk5qdifhl41aws2q7ccs"; depends=[ggplot2 gridExtra gtools JM joineR lme4 MASS Matrix meta msm statmod survival]; broken = true; }; @@ -21772,7 +22101,6 @@ in with self; { kerdiest = derive2 { name="kerdiest"; version="1.2"; sha256="16xj2br520ls8vw5qksxq9hqlpxlwmxccfk5balwgk5n2yhjs6r3"; depends=[chron date evir]; broken = true; }; kernelPSI = derive2 { name="kernelPSI"; version="1.1.1"; sha256="1gnp3ixqmijy6xanlc4l8255biwxmlfyhd3y68arry9rzfjkmxpz"; depends=[CompQuadForm kernlab lmtest pracma Rcpp RcppArmadillo]; broken = true; }; kernelPhil = derive2 { name="kernelPhil"; version="0.1"; sha256="0pzsknb0ibm3v0ibfaklb4g2mx7zrva4m29356cirwd29nmd8bqw"; depends=[benchmarkme directlabels dplyr ggplot2 gridExtra Hmisc pbapply reshape2 rgdal wordspace]; broken = true; }; - keyplayer = derive2 { name="keyplayer"; version="1.0.3"; sha256="0j4n46r9ivkbzqz8g22dq2bpmx7bs05yb5qp27p9jnfh5x19v2ds"; depends=[igraph matpow sna]; broken = true; }; kineticF = derive2 { name="kineticF"; version="1.0"; sha256="1k54zikgva9fw9c4vhkc9b0kv8sq5pmc962s8wxr6qv97liv9p46"; depends=[circular lqmm MASS plotrix sp splancs]; broken = true; }; kmcudaR = derive2 { name="kmcudaR"; version="1.1.0"; sha256="16dkv9ag5375zc23nqakbg7v6knxvh1pips9rjsls0d7rw2bg1bs"; depends=[Rcpp RcppEigen]; broken = true; }; kmlShape = derive2 { name="kmlShape"; version="0.9.5"; sha256="1p35ihjq84jnzq78yksdblc0c1qcn13f8n4khddsxcqvk3a44xb1"; depends=[class kml lattice longitudinalData]; broken = true; }; @@ -21780,6 +22108,7 @@ in with self; { knnIndep = derive2 { name="knnIndep"; version="2.0"; sha256="1fwkldgs2994svf3sj90pwsfx6r22cwwa22b30hdmd24l8v9kzn7"; depends=[]; broken = true; }; kolmim = derive2 { name="kolmim"; version="1.0"; sha256="0g1i0cazi4nhfwdd3ywqrar1sn7bw77w38qjii045w5vqg05srkp"; depends=[]; broken = true; }; kulife = derive2 { name="kulife"; version="0.1-14"; sha256="070ayy6fr9nsncjjljikn2i5sp2cx3xjjqyc64y2992yx74jgvvd"; depends=[]; broken = true; }; + kwb_hantush = derive2 { name="kwb.hantush"; version="0.3.0"; sha256="1rlm7i95yw66asgkag93phig2y9lic4xl2fv3cbnr3v751f6a59m"; depends=[lattice]; broken = true; }; kzfs = derive2 { name="kzfs"; version="1.5.0.2"; sha256="0x0fc807p0pwsjkhjq51ymwr9nhs6cb0m82029cz8bbn3yf6cymq"; depends=[digest kzft]; broken = true; }; kzft = derive2 { name="kzft"; version="0.17"; sha256="1y6almhs1x21cr4bbf5fj3mnhp65ivzs869660cyg70sva853sv7"; depends=[polynom]; broken = true; }; labelrank = derive2 { name="labelrank"; version="0.1"; sha256="03pmpkjdhgw80473kdzdz4s4828pa8f5bja2zqicxrhvyvicvz6f"; depends=[pdist]; broken = true; }; @@ -21791,6 +22120,7 @@ in with self; { lasso2 = derive2 { name="lasso2"; version="1.2-22"; sha256="1l87djh539m444p5nl9975dd3v5nc7j8af9rj4xr54h5d0mbcbjv"; depends=[]; broken = true; }; lassoscore = derive2 { name="lassoscore"; version="0.6"; sha256="1i3i07da8sw9w47rcflhylz8zxvzkyycbc1a4gf6hbcpp21rqd7d"; depends=[glasso glmnet Matrix]; broken = true; }; latentFactoR = derive2 { name="latentFactoR"; version="0.0.4"; sha256="0kgzgympcfp6l4jysccrlxrbmqasz1v95wkmfsw8qgi7dzfsgywc"; depends=[BBmisc EGAnet fspe googledrive ineq Matrix mlr mvtnorm psych qgraph rstudioapi xgboost]; broken = true; }; + latticeDensity = derive2 { name="latticeDensity"; version="1.2.6"; sha256="0l9ypdpy09nnmanj2gvaxzj79s8d9iqwy6rv0rig5fwbqv1y6135"; depends=[sf sp spam spatialreg spatstat spatstat_geom spdep splancs]; broken = true; }; lavaan_survey = derive2 { name="lavaan.survey"; version="1.1.3.1"; sha256="133hpy8s00y6jzwwzl9brdh70w26jycdm3n1c6bcryghwh3ai4xr"; depends=[lavaan MASS survey]; broken = true; }; layer = derive2 { name="layer"; version="0.0.1"; sha256="0mmijkk4ppbmhlp6ah88a9v3iwdd9j6yw7ff8kk7p1iw63qkiyxi"; depends=[dplyr ggnewscale ggplot2 raster scico sf stars]; broken = true; }; lazyNumbers = derive2 { name="lazyNumbers"; version="1.2.1"; sha256="0dc0j79cv7j3y04mpb2pp3qrjwhiv74rypl9yplwyr36z6fgl00l"; depends=[BH Rcpp RcppCGAL RcppEigen]; broken = true; }; @@ -21806,8 +22136,6 @@ in with self; { learnstats = derive2 { name="learnstats"; version="0.1.1"; sha256="1sa064cr7ykl4s1ssdfmb3v1sjrnkbwdh04hmwwd9b3x0llsi9vv"; depends=[ggplot2 Rcmdr shiny]; broken = true; }; leerSIECyL = derive2 { name="leerSIECyL"; version="1.0.2"; sha256="1zx28gpnys9mmhq7wwljfnq92wj1h1vxgqiirnfmn36z942nvmxl"; depends=[RCurl]; broken = true; }; legco = derive2 { name="legco"; version="0.1.4"; sha256="0fd1d2zf510lyrwclsy57d8lgqprk6p8c6ghxglgm6gbx9d2yrgg"; depends=[dplyr httr jsonlite]; broken = true; }; - lehdr = derive2 { name="lehdr"; version="1.1.1"; sha256="0sal2qh2rcl4mkdh9a9zy6ixxb99gax04ldawrp091kzwscng9yz"; depends=[dplyr glue httr rappdirs readr rlang stringr]; broken = true; }; - letsR = derive2 { name="letsR"; version="4.0"; sha256="07l1wgwnkqnvh47ssg62vj88vgml52n0934w00pjxdk90kk3c5zs"; depends=[fields geosphere maps maptools raster rgdal rgeos sp XML]; broken = true; }; liGP = derive2 { name="liGP"; version="1.0.1"; sha256="01yhrzx67gz7j201mkv1aracrvjh4hxkrc7jn48cfwz0dp1lznws"; depends=[doParallel foreach hetGP laGP]; broken = true; }; libproj = derive2 { name="libproj"; version="8.1.0-1"; sha256="16mavs0kpbn1lskfgyzgw5ns270kdvvh2991c8w26cyl23zrcys6"; depends=[cpp11 rappdirs]; broken = true; }; libsoc = derive2 { name="libsoc"; version="0.7.3"; sha256="0baglknb67gmzr4cimlvz44f11np8glcdjdgs3jy8qlz0c8pm95p"; depends=[]; broken = true; }; @@ -21816,6 +22144,7 @@ in with self; { likeLTD = derive2 { name="likeLTD"; version="6.3.0"; sha256="1mjf4667xd9pf2684d7vqaj54l5s9pgljn4vkfp32wzbfknq6y8r"; depends=[DEoptim gdata ggplot2 gtools rtf]; broken = true; }; limitplot = derive2 { name="limitplot"; version="1.2"; sha256="0wj1xalm80fa5pvjwh2zf5hpvxa3r1hnkh2z9z285wkbrcl0qfl2"; depends=[]; broken = true; }; linLIR = derive2 { name="linLIR"; version="1.1"; sha256="1v5bwki5j567x2kndfd5nli5i093a33in31025h9hsvkbal1dxgp"; depends=[]; broken = true; }; + linea = derive2 { name="linea"; version="0.1.1"; sha256="1p3wd3m239x37hd4g4gp4nbgf4jlwk9lx0a00781jx7h2gcg32s7"; depends=[car dplyr ggplot2 gtrendsR lubridate magrittr openxlsx plotly purrr RColorBrewer readr readxl reshape2 sjmisc stringr tibble tidyr tidyverse tis zoo]; broken = true; }; linear_tools = derive2 { name="linear.tools"; version="1.3.0"; sha256="14lp3gifzbid82lkr7rdqajz2abp8m7y8irpwx6s8w66djjfckda"; depends=[ggplot2 magrittr plyr pryr scales stringr]; broken = true; }; linearQ = derive2 { name="linearQ"; version="2.0"; sha256="0sx7bx0x1k193day5w1dbmc09kn5741pcilxijjn2y5aijhd5wk9"; depends=[Rcpp stepR]; broken = true; }; linkim = derive2 { name="linkim"; version="0.1"; sha256="0yvyid9x59ias8h436a202hd2kmqvn8k1zcrgja2l4z2pzcvfn91"; depends=[]; broken = true; }; @@ -21825,6 +22154,7 @@ in with self; { lle = derive2 { name="lle"; version="1.1"; sha256="09wq7mzw48czp5k0b4ij399cflc1jz876fqv0mfvlrydc9igmjhk"; depends=[MASS scatterplot3d snowfall]; broken = true; }; lllcrc = derive2 { name="lllcrc"; version="1.2"; sha256="06n1fcd3g3z5rl2cyx8jhyscq9fb52mmh0cxg81cnbmai3sliccb"; depends=[combinat data_table plyr VGAM]; broken = true; }; lmSupport = derive2 { name="lmSupport"; version="2.9.13"; sha256="0ln5c91mbxkymgnv2nw5m3nrm5bwckpikgb9x1qhmjc55m98wkb8"; depends=[AICcmodavg car gplots gvlma lme4 pbkrtest psych pwr]; broken = true; }; + lmap = derive2 { name="lmap"; version="0.1.1"; sha256="0d9blb8hgq2b3klczml74sgpkzbg8v4kn5mzvmip50s1bkk0brfz"; depends=[dplyr ggforce ggplot2 ggrepel nnet tidyverse]; broken = true; }; lmeNB = derive2 { name="lmeNB"; version="1.3"; sha256="03khn9wgjbz34sx0p5b9wd3mhbknw8qyvyd5pvllmjipnir63d3q"; depends=[lmeNBBayes numDeriv statmod]; broken = true; }; lmeNBBayes = derive2 { name="lmeNBBayes"; version="1.3.1"; sha256="13shfsh9x6151xy8gicb25sind90imrwclnmfj96b76p5dvhzabm"; depends=[]; broken = true; }; lmec = derive2 { name="lmec"; version="1.0"; sha256="09shj01h2dl5lh7ch0wayr7qyhlmk0prv3p1vfgy91sn0wpbqlxr"; depends=[mvtnorm]; broken = true; }; @@ -21853,10 +22183,11 @@ in with self; { machQA = derive2 { name="machQA"; version="0.1.4"; sha256="1rdrjy9sxql2c9y691a1jrmgsv7m1ihsschixxb6wc7aahf7mav6"; depends=[machina plyr]; broken = true; }; machina = derive2 { name="machina"; version="0.1.6"; sha256="009mzqb5jgnilj9b5ldmm5600008bljlqacm8jjxvqsfnfdfg8zv"; depends=[DT httr jsonlite lubridate rhandsontable xts]; broken = true; }; macroBiome = derive2 { name="macroBiome"; version="0.3.0"; sha256="0a4g3pp3g3iai8q8c1w230wldr0g788qcmfzc1qbmc5cnaxgs56r"; depends=[palinsol raster rworldxtra sp strex]; broken = true; }; + mads = derive2 { name="mads"; version="0.1.6"; sha256="0nz1fg3gyj72k6dpkjnwqjvps0inv1qgk5vlc8ycj3k720qcsd81"; depends=[mrds]; broken = true; }; + magicaxis = derive2 { name="magicaxis"; version="2.2.14"; sha256="1gqnivn6qjmf7axdi0pff6a40clklbipcr6qvm6ivzqbqhpbcb7v"; depends=[celestial mapproj MASS plotrix RANN sm]; broken = true; }; mail = derive2 { name="mail"; version="1.0"; sha256="1m89cvw5ba4d87kp2dj3f8bvd6sgj9k56prqmw761q919xwprgw6"; depends=[]; broken = true; }; majesticR = derive2 { name="majesticR"; version="0.1.1"; sha256="0x23p4js9cfnj8c33cp0fql5pvs4fn4frbbzpq85mxjhiifkxxpf"; depends=[jsonlite urltools]; broken = true; }; mapReasy = derive2 { name="mapReasy"; version="1.0"; sha256="13va0z967ckwxnnianki5aj66km0x6r37nj4mz9qd3b0bps4g2kj"; depends=[Hmisc rgdal sp]; broken = true; }; - mapStats = derive2 { name="mapStats"; version="2.4"; sha256="18pp1sb9p4p300ffvmzjrg5bv1i7f78mhpggq83myc26c3a593na"; depends=[classInt colorspace Hmisc lattice maptools RColorBrewer reshape2 sp survey]; broken = true; }; maple = derive2 { name="maple"; version="0.99.5"; sha256="1cg7grvnrfzdqghlfv5bsii6ips3mykgaw85vx0z9jafhdfpd32f"; depends=[dbarts dplyr ggalluvial ggplot2 plotly rlang Seurat shiny spruce]; broken = true; }; mapr = derive2 { name="mapr"; version="0.5.2"; sha256="0qc1zqa2yqgy777wbm6lj37vzaaxaz0gdimr62wv9fyddkbkshk4"; depends=[data_table ggplot2 gistr jsonlite leaflet maps RColorBrewer sp spocc]; broken = true; }; maptools = derive2 { name="maptools"; version="1.1-8"; sha256="1xz0cqg629vz7mawwxx650mgmvh3wzn25rnxy4sij5jrypipk1ay"; depends=[foreign lattice sp]; broken = true; }; @@ -21864,20 +22195,22 @@ in with self; { mason = derive2 { name="mason"; version="0.3.0"; sha256="1x5wiagb1sy5gkp0xkbr1jzhrjg1c2bqdh4hy6igwcnws2cbhxyr"; depends=[broom dplyr magrittr purrr rlang tibble tidyr tidyselect]; broken = true; }; matR = derive2 { name="matR"; version="0.9.1"; sha256="1qw2vqmpq7gc3dmr9r000ccjj7xa0h82waxnvryz3l17ggryyjjm"; depends=[BIOM_utils MGRASTer]; broken = true; }; matchbook = derive2 { name="matchbook"; version="1.0.7"; sha256="0xfqg8z2zkn215kqmjjkqdwrgsk7cn4jdpxfgd6razhcbvflg48j"; depends=[]; broken = true; }; - mathpix = derive2 { name="mathpix"; version="0.5.0"; sha256="0imd2rxzh3zndl3laa1fx3m90zr97l02y42s7dhi6b0g2m2lirz4"; depends=[base64enc httr magick purrr rstudioapi texPreview]; broken = true; }; matie = derive2 { name="matie"; version="1.2"; sha256="1ymx49cyvz63imqw5n48grilphiqvvdirwsrv82p7jgxdyav2xv0"; depends=[cba dfoptim gplots igraph mvtnorm seriation]; broken = true; }; matrixpls = derive2 { name="matrixpls"; version="1.0.13"; sha256="0m9gqq5waicj3znlsyz50cj6w1x6rkvfwknavhxid8r4p9h891ak"; depends=[assertive lavaan MASS matrixcalc psych]; broken = true; }; + mauricer = derive2 { name="mauricer"; version="2.5.2"; sha256="1zd68dzbbcck0y7bk6dw3yp6v9rh824cp3f0vza6y7lav40q1p2v"; depends=[beastier stringr]; broken = true; }; maxTPR = derive2 { name="maxTPR"; version="0.1.0"; sha256="13x5rz0mfha5pzahkk4x67ncz9v77sa690cyl6wigwsldsrvzr3h"; depends=[aucm Rsolnp]; broken = true; }; maxadjAUC = derive2 { name="maxadjAUC"; version="0.1.0"; sha256="04zdaqmavhhrj63s2k5pqncvlzbfnxan7r0fagfka9dypwwcl5qm"; depends=[aucm Hmisc Rsolnp survival]; broken = true; }; mbclusterwise = derive2 { name="mbclusterwise"; version="1.0"; sha256="1ilqaxcxf1k3ck910s0xqwnp88w8ag5rn1dpvaa1i7jlcldsbnhp"; depends=[ade4 doParallel foreach kknn]; broken = true; }; mboxr = derive2 { name="mboxr"; version="0.2.0"; sha256="1d11fpz17k65dzw9sjc7zfs1jpajzrh2pvr2s435p83g3mpf40vz"; depends=[dplyr lubridate magrittr purrr reticulate stringr tibble tidyr]; broken = true; }; mcBFtest = derive2 { name="mcBFtest"; version="0.1.0"; sha256="1fmn9pzbvk508ljspksppqxdvggx5bvipgs54nz9605y6p8zzmi5"; depends=[MASS]; broken = true; }; mcGlobaloptim = derive2 { name="mcGlobaloptim"; version="0.1"; sha256="1p8841y9a4yq51prv6iirgw9ln8jznx8nk547sc5xlznksjy1g9n"; depends=[randtoolbox snow]; broken = true; }; + mcbette = derive2 { name="mcbette"; version="1.15.2"; sha256="1ckbz9i3zmm8r4y7cx0n9d2jqzx8lmf497ywqmx8bq3mprqxnb5p"; depends=[babette beastier beautier curl devtools mauricer Rmpfr testit txtplot]; broken = true; }; mcc = derive2 { name="mcc"; version="1.0"; sha256="0p661a870bvh3xhcahqqq85azn9rjl3vacjy96jsdn86irj4s0vi"; depends=[]; broken = true; }; mcglm = derive2 { name="mcglm"; version="0.8.0"; sha256="04zl3y5zvms5n0s1mzsb8dm9g57l84zk16516kwni3gxmdkaq4sw"; depends=[assertthat Matrix Rcpp RcppArmadillo]; broken = true; }; mcheatmaps = derive2 { name="mcheatmaps"; version="1.0.0"; sha256="1gglm32xpmim38m7fziczgqfbpcq2899lxardsrzg6j1vhmf765y"; depends=[gridBase]; broken = true; }; mclcar = derive2 { name="mclcar"; version="0.2-0"; sha256="0zgf7ha22586nh1yzdnhz1rzrqkn6yzr12qva9ag297ry4z4bn5y"; depends=[fields maxLik nleqslv rsm spam spatialreg spdep]; broken = true; }; mcll = derive2 { name="mcll"; version="1.2"; sha256="0i9zqbh0l9a9mv4558gbdq9mh52chanykyfwmiymmxygxhp809sz"; depends=[locfit statmod]; broken = true; }; + mcmcabn = derive2 { name="mcmcabn"; version="0.6"; sha256="0vk5km8bk00pxi8qlcq9z3imhj1c9qys6wj8v6iimb1mkxy9ds7c"; depends=[abn coda cowplot ggplot2 ggpubr gRbase]; broken = true; }; mcsm = derive2 { name="mcsm"; version="1.0"; sha256="13sx7s3ywis5n4a70ld2szld9fb8jkfsc82dy6iskhy17vy8pml0"; depends=[coda MASS]; broken = true; }; mdapack = derive2 { name="mdapack"; version="0.0.2"; sha256="1dfcjh8yax06m890ql0kc2rn539z4xbhw7bq9a8cbrm7jnkq03iq"; depends=[covr curl devtools FactoMineR ggplot2 gh git2r httr knitr mice openssl pkgbuild reshape2 rlang rmarkdown roxygen2 spelling testthat VIM]; broken = true; }; mdir = derive2 { name="mdir"; version="0.9.0"; sha256="0zc5dacyfv1vfr86cyhjrwcmd6pws6sm7pqsw00nlp7b77l1qms5"; depends=[ggplot2 Rcpp RcppArmadillo RcppParallel salso stringr testthat tidyr]; broken = true; }; @@ -21891,6 +22224,7 @@ in with self; { metaMix = derive2 { name="metaMix"; version="0.3"; sha256="17qkwg9iz5v63ybyvqppbf044l0pi0ym5pw283174dlx8lfac60q"; depends=[data_table ggplot2 gtools Matrix Rmpi]; broken = true; }; metabolighteR = derive2 { name="metabolighteR"; version="0.1.3"; sha256="0ip7cy40jndcwp8yc42pjzklv35dkxjd3pdlpwk0r0jngp7nbjim"; depends=[crayon dplyr httr magrittr purrr]; broken = true; }; metabolomicsR = derive2 { name="metabolomicsR"; version="1.0.0"; sha256="0b12nddczh8i6hnv679pa521yps26n98j2cnai8s67xiw5ir0y5v"; depends=[data_table ggplot2 plotROC]; broken = true; }; + metacor = derive2 { name="metacor"; version="1.0-2.1"; sha256="0y3z7jbhw5c2dbn9fx9wlw1311irjc2xvnm5hnaixbbj53qz24n0"; depends=[gsl rmeta]; broken = true; }; metaplotr = derive2 { name="metaplotr"; version="0.0.3"; sha256="01iala6cxsxv30fnlh80md5mpy3ksd2piw90zcls8f68g1c6v1jy"; depends=[ggplot2 gridExtra]; broken = true; }; meteogRam = derive2 { name="meteogRam"; version="1.0"; sha256="167gyxjnl4dyfqs3znv8sdpkvpqdxzdqi1g730s30gycrm9snap9"; depends=[ggplot2 RadioSonde]; broken = true; }; mfbvar = derive2 { name="mfbvar"; version="0.5.6"; sha256="1wv46h6cr0xnvr8dxymx362skf7nf77yw84y6g48rj9mbq8kkkcj"; depends=[dplyr ggplot2 GIGrvg lubridate magrittr Rcpp RcppArmadillo RcppParallel RcppProgress stochvol tibble zoo]; broken = true; }; @@ -21911,7 +22245,6 @@ in with self; { miraculix = derive2 { name="miraculix"; version="0.9.23"; sha256="0i08v5hq43296k3sa7akpq4h5dmvpkgn7cfpqwdyp0qaxkqk0k0s"; depends=[RandomFieldsUtils]; broken = true; }; miscor = derive2 { name="miscor"; version="0.1-1"; sha256="1vn0q0i2f1szjywddb7h7krpbf0qch6gmbzs03m4zb03xd70983b"; depends=[]; broken = true; }; mise = derive2 { name="mise"; version="0.1.0"; sha256="1ydbm76w3y0p5h82shxjblwlzbrmzwx0bgq9w2axjwz2nx8jfw0a"; depends=[]; broken = true; }; - misha = derive2 { name="misha"; version="4.2.6"; sha256="0ymgs43dksqzkz4507fywgqynr3xz3fvgkx0fz2bykca0658pv3q"; depends=[curl magrittr]; broken = true; }; mixComp = derive2 { name="mixComp"; version="0.1-2"; sha256="01zgf31mmnjnwwji9yadfhwa49xy4i3wf0f5glifmpnvmr6d7y1d"; depends=[boot cluster expm kdensity matrixcalc Rsolnp]; broken = true; }; mixEMM = derive2 { name="mixEMM"; version="1.0"; sha256="0344ay1avi37kvh5w9bknayx67yh7rflj6zhw68d2888v7cbghjy"; depends=[]; broken = true; }; mixRasch = derive2 { name="mixRasch"; version="1.1"; sha256="1r067pv7b54y1bz8p496wxv4by96dxfi2n1c99gziqf5ramx3qzp"; depends=[]; broken = true; }; @@ -21946,6 +22279,7 @@ in with self; { momr = derive2 { name="momr"; version="1.1"; sha256="091vzaw8dm29q89lg2iys25rbg2aslgdn9sk06x038nngxdrn95r"; depends=[gplots Hmisc nortest]; broken = true; }; monographaR = derive2 { name="monographaR"; version="1.2.1"; sha256="09fkcw13h7dx7j5vyp48fk6yzv9n64568zf2zvmm2c008jw3gkbm"; depends=[circular maptools png raster rmarkdown sp]; broken = true; }; mopsocd = derive2 { name="mopsocd"; version="0.5.1"; sha256="10hssnm1afqmxa9kw6ifqnz3p3yyjrmxgi98zlj31a5g4nis8wb1"; depends=[]; broken = true; }; + moranajp = derive2 { name="moranajp"; version="0.9.6"; sha256="1w28fzwxgrmf12l40f4wl2h8qflbsii7g3wiqxxxg0v6njp49ws1"; depends=[dplyr ggplot2 ggraph igraph magrittr purrr rlang rvest stringi stringr tibble tidyr]; broken = true; }; morgenstemning = derive2 { name="morgenstemning"; version="1.0"; sha256="17y90cf8ajmkfwla0hm4jgkbkd1mxnym63ph2468sfxkhn0r3v88"; depends=[]; broken = true; }; mortyr = derive2 { name="mortyr"; version="0.0.2"; sha256="0flihmkzw8dypp2ijq22cd3rka6h8cd1qdyr4zrs9cv5335nddmk"; depends=[httr jsonlite tibble]; broken = true; }; mosaic_find = derive2 { name="mosaic.find"; version="0.1.2"; sha256="1fzgksh8sp701qjfrvjl2bg967qjkjpilxsfkrazhw71cgmzjgjl"; depends=[minpack_lm]; broken = true; }; @@ -21979,6 +22313,7 @@ in with self; { multicon = derive2 { name="multicon"; version="1.6"; sha256="16glkgnm4vlpxkhf1xw1gl1q10yavx9479i21v29lldag35z8pqx"; depends=[abind foreach mvtnorm psych sciplot]; broken = true; }; multicross = derive2 { name="multicross"; version="2.1.0"; sha256="17hk03wsms9ij6hp6dw77cvvngdb5i66is6pcl1q21pyp327zqi6"; depends=[crossmatch MASS Matrix nbpMatching]; broken = true; }; multifluo = derive2 { name="multifluo"; version="1.1"; sha256="1hnh1gj6lfnh2fn0v064bszydgsr6p9f7p8yxyw5rdxfrxymiw09"; depends=[agricolae ellipse imager]; broken = true; }; + multilateral = derive2 { name="multilateral"; version="1.0.0"; sha256="13zp2357vqaj09m6af8gzjgf74983icikbnn11z18r8c3wb5kngy"; depends=[assertive data_table fastmatch MatrixModels yaml]; broken = true; }; multinbmod = derive2 { name="multinbmod"; version="1.0"; sha256="1c4jyzlcjkqdafj9b6hrqp6zs33q6qnp3wb3d7ldlij7ns9fhg71"; depends=[]; broken = true; }; multinomRob = derive2 { name="multinomRob"; version="1.8-6.1"; sha256="1fdjfk77a79fy7jczhpd2jlbyj6dyscl1w95g64jwxiq4hsix9s6"; depends=[MASS mvtnorm rgenoud]; broken = true; }; multiversion = derive2 { name="multiversion"; version="0.3.6"; sha256="1gcr4p2kwyyi1skkq1b5ian0flfviyrhh14i66jajyc2qdxfqfic"; depends=[]; broken = true; }; @@ -21991,7 +22326,6 @@ in with self; { mvcluster = derive2 { name="mvcluster"; version="1.0"; sha256="0yfl31scdgsiljvpv1yxc5bwwzr6kbhpjwqh2kql7xf0m0hc1pr4"; depends=[Rcpp RcppArmadillo]; broken = true; }; mvprpb = derive2 { name="mvprpb"; version="1.0.4"; sha256="1kcjynz9s7vrvcgjb9sbqv7g50yiymbpkpg6ci34wznd33f7nrxm"; depends=[]; broken = true; }; mvrtn = derive2 { name="mvrtn"; version="1.0"; sha256="0k0k76wk5zq0cjydncsrb60rdhmb58mlf7zhclhaqmli1cy697k8"; depends=[]; broken = true; }; - mvst = derive2 { name="mvst"; version="1.1.0"; sha256="03q0kdychsmn4wcn50b6dqhxn4f2mjvrr5rac942xdv75w8qklc9"; depends=[MCMCpack mnormt mvtnorm]; broken = true; }; mwaved = derive2 { name="mwaved"; version="1.1.8"; sha256="092sqd9harx289bgghw9x495llzhab0vkgkjka5jhi4ad1rfk3vh"; depends=[Rcpp shiny]; broken = true; }; myepisodes = derive2 { name="myepisodes"; version="1.1.1"; sha256="0xk9bwgpl630nhc8qa2pc0rwqbqk3haxnp78gfxq6sn6z7i44k1p"; depends=[XML]; broken = true; }; mztwinreg = derive2 { name="mztwinreg"; version="1.0-1"; sha256="1rg6ikaqdrc7q44s3r3km8h45prnvcpzpxd7nxbmh209iz9j19ai"; depends=[mclogit rms]; broken = true; }; @@ -22000,8 +22334,10 @@ in with self; { nCov2019 = derive2 { name="nCov2019"; version="0.4.6"; sha256="00jwywvb4prypn7cvwd1fb29jffvzdmg18axnl9ncncr0xjmvgx3"; depends=[downloader ggplot2 jsonlite RColorBrewer]; broken = true; }; nFCA = derive2 { name="nFCA"; version="0.3"; sha256="1jyyzagmppm3i7vh3ia4ic0zql1w04f66z81v0zpdihd4cbl5ra7"; depends=[]; broken = true; }; nVennR = derive2 { name="nVennR"; version="0.2.3"; sha256="035gblc8427v0vq288rib3jfpz5fmcpvqg6nfaijwmbkz3gd41b6"; depends=[Rcpp]; broken = true; }; + nadiv = derive2 { name="nadiv"; version="2.17.2"; sha256="0v2jw0md4bjn15g6slx2bx7ipr3r0s1zv3frjach3rd7b1bs9z7k"; depends=[Matrix]; broken = true; }; namespace = derive2 { name="namespace"; version="0.9.1"; sha256="1bsx5q19l7m3q2qys87izvq06zgb22b7hqblx0spkvzgiiwlq236"; depends=[]; broken = true; }; nanop = derive2 { name="nanop"; version="2.0-6"; sha256="007gdc93pk0vpfmsw7zgfma2k1045n2cxwwsyy276smy0ys9fdhp"; depends=[distrEx rgl]; broken = true; }; + nbody = derive2 { name="nbody"; version="1.33"; sha256="1ky07bi830z3c2fvxq0fmicsllm736b510q4zphff4rwljx1awf2"; depends=[magicaxis Rcpp]; broken = true; }; ncg = derive2 { name="ncg"; version="0.1.1"; sha256="1jzkzp61cc5jxmdnl867lcrjjm7y2iw9imzprbd098p1j3w8fvj7"; depends=[]; broken = true; }; ndvtest = derive2 { name="ndvtest"; version="1.0-0"; sha256="15jqh58n63g2vr919z10d5ryhvk7325bv4gmd2xgdpi76p2dbyg0"; depends=[CompQuadForm nonnest2 Rdpack sandwich]; broken = true; }; nearfar = derive2 { name="nearfar"; version="1.2"; sha256="116rq797a5fascirz8xg465fywjf40j1k5czryvqzpik0if0w00r"; depends=[car GenSA MASS nbpMatching]; broken = true; }; @@ -22013,12 +22349,14 @@ in with self; { networkreporting = derive2 { name="networkreporting"; version="0.1.1"; sha256="1ssbz8lw4mlwcblwfbyffvayvb2gmihq4qlz5q9222fn4aa3raxd"; depends=[dplyr functional ggplot2 lazyeval plyr reshape2 stringr surveybootstrap]; broken = true; }; networksis = derive2 { name="networksis"; version="2.1-3"; sha256="1kvil3qs7xd94ak9jgvj1nss55gjg0y7d35zmass9h1hjkcrq7bg"; depends=[network]; broken = true; }; neural = derive2 { name="neural"; version="1.4.2.2"; sha256="05hrqgppgwp38rdzw86naglxj0bz3wqv04akq7f0jxbbjc6kwy4j"; depends=[]; broken = true; }; + nhlscrape = derive2 { name="nhlscrape"; version="0.1.3"; sha256="0x6y747j6lha3jw4v2wavgd12xw5nx4m8biv9rmq9z0qy53vncjc"; depends=[DBI httr jsonlite RSQLite rvest xml2]; broken = true; }; nightmares = derive2 { name="nightmares"; version="0.0.2"; sha256="1dmqrb17ncwazy1nb0zzfy7fq51ah7rz0xmhmmx6d30paaix2vc7"; depends=[raster rgdal sp]; broken = true; }; nitrcbot = derive2 { name="nitrcbot"; version="1.2"; sha256="0lainbw9j5aj9s824afpxdjl3q2f728jfpdfji7kpi9hdg8jixhx"; depends=[dplyr httr jsonlite RCurl]; broken = true; }; nlaR = derive2 { name="nlaR"; version="0.4.1"; sha256="11f2ka3fi74bkf0izzc17w2h8v3ngdxhy6m0fjv1wjrbby2cqh8g"; depends=[rappdirs]; broken = true; }; nlirms = derive2 { name="nlirms"; version="3.4.4"; sha256="1njyfip377a0f6hf9y32s077b4jv4h8ydbjgnl68yfypxbfn2xyx"; depends=[gridExtra gtable]; broken = true; }; nlmeODE = derive2 { name="nlmeODE"; version="1.1"; sha256="1zp1p98mzbfxidl87yrj2i9m21zlfp622dfnmyg8f2pyijhhn0y2"; depends=[deSolve lattice nlme]; broken = true; }; nlmixr = derive2 { name="nlmixr"; version="2.0.7"; sha256="1fqshr8y9rrkbnvcrpk0m12gimd1m0lrc2cl8x1x78hnhfs4dvlb"; depends=[backports BH brew dparser fastGHQuad ggplot2 lbfgsb3c magrittr Matrix minqa n1qn1 nlme Rcpp RcppArmadillo RcppEigen rex RxODE StanHeaders symengine]; broken = true; }; + nlshelper = derive2 { name="nlshelper"; version="0.2"; sha256="02xnx0j8p1im1hdwnia3n51dicscjf8s33y475i3dczvhmivvbmf"; depends=[broom dplyr magicaxis mgcv nlme]; broken = true; }; nlsrk = derive2 { name="nlsrk"; version="1.1"; sha256="0yqcsz5pdhqsrd86g0yx8bdac13fbmvg89phj3v4qvla2jfznjba"; depends=[]; broken = true; }; nmm = derive2 { name="nmm"; version="0.9"; sha256="00qij3vfpld6dzs6nzc43k1skxn8imdy41l4m42584fflwd1sfhj"; depends=[abind AER data_table DEoptim dplyr gsubfn Hmisc magrittr maxLik mlogit plyr Rdpack systemfit tidyr]; broken = true; }; nnetpredint = derive2 { name="nnetpredint"; version="1.2"; sha256="1c6s9wm6vhylwv4xhp2hkllw18zj8hdr17ls9vlxm9qs3wx1v48w"; depends=[RSNNS]; broken = true; }; @@ -22026,6 +22364,7 @@ in with self; { nodeHarvest = derive2 { name="nodeHarvest"; version="0.7-3"; sha256="0nh3g50rk9qzrarpf29kijwkz9v60682i0ag77j2ipyvhhbpwpkc"; depends=[quadprog randomForest]; broken = true; }; nontarget = derive2 { name="nontarget"; version="1.9"; sha256="0ndqcr73sja5ks5kdahhakpz9lw3rp26imklagdv4f5agqnb608s"; depends=[enviPat mgcv nontargetData]; broken = true; }; nontargetData = derive2 { name="nontargetData"; version="1.1"; sha256="07cdbpmn64sg4jfhljdcx503d55azyz58x7nkji044z3jmdryzqw"; depends=[]; broken = true; }; + norgeo = derive2 { name="norgeo"; version="2.3.1"; sha256="1437b49ig7j5c3ympb8mjn0qz43szpmwqd3s8rlqmlfhycnh9maw"; depends=[data_table DBI httr2 magrittr odbc RSQLite writexl]; broken = true; }; norm2 = derive2 { name="norm2"; version="2.0.4"; sha256="0ahz6x59k00pqalzjc3ajiby1ysmarjssga9amwh9vd6vmzzyfb7"; depends=[]; broken = true; }; normtest = derive2 { name="normtest"; version="1.1"; sha256="073r2mwfs6c4vqh8921nlyygl0f20nhv997s0iwf00d3jckkc4pp"; depends=[]; broken = true; }; normwhn_test = derive2 { name="normwhn.test"; version="1.0"; sha256="1kr45bfydk40hgdg24i2f28cdaw65hg9gmsgv4lsvvr2m3r74vi6"; depends=[]; broken = true; }; @@ -22037,13 +22376,13 @@ in with self; { nprcgenekeepr = derive2 { name="nprcgenekeepr"; version="1.0.5"; sha256="1j6pfc694yf1m42a0fhlbh5wdbmgs61fswbw7083h69d2sr2zq05"; depends=[anytime futile_logger htmlTable lubridate Matrix plotrix readxl Rlabkey rlang shiny stringi WriteXLS]; broken = true; }; npsp = derive2 { name="npsp"; version="0.7-11"; sha256="17nadnxwp8jm68sqsa4yvhbllw0p8csicsipi7mdw9gfx0cc5dzx"; depends=[quadprog sp spam]; broken = true; }; npst = derive2 { name="npst"; version="2.0"; sha256="1y5ij3nmh9pj6p97jpx75g26sk508mznr0l67cwj381zfb77hj1n"; depends=[]; broken = true; }; - nsRFA = derive2 { name="nsRFA"; version="0.7-15"; sha256="004dm143v032b80knpz7pj3z71lci7vgd6hz1zz22rpfg27ghgdd"; depends=[]; broken = true; }; nsapi = derive2 { name="nsapi"; version="0.1.1"; sha256="06xf2p6f911vwpzky47r35fjgjvlhp13p9pf1zlvjrv66kdw8vbp"; depends=[crul xml2]; broken = true; }; nsdr = derive2 { name="nsdr"; version="0.1.1"; sha256="1p73aj465lk52n3dikkqi54zm2f9v00ikpmry10p42qhfkgrw61l"; depends=[]; broken = true; }; nse2r = derive2 { name="nse2r"; version="0.1.6"; sha256="0b7ll490xf8r4787qkaz01z3djc7dzgzqg3w4nmmrnrfv36mkybf"; depends=[jsonlite magrittr yahoofinancer]; broken = true; }; nsgp = derive2 { name="nsgp"; version="1.0.5"; sha256="0piajjz3r71dnjw7lwpjhbaygxcrbbxfvhf8p3n2izyr2pw5fml9"; depends=[MASS]; broken = true; }; nsrr = derive2 { name="nsrr"; version="0.2.0"; sha256="1x1c7pvyfvzmaymxcz6ghr5002wz48796c3hsihwbx6951w623sq"; depends=[digest httr jsonlite]; broken = true; }; ntwk = derive2 { name="ntwk"; version="1.0.0"; sha256="1c12c3pq992f02z3ikx17zv2djq9d9ly232ha0j5jswsksqzx024"; depends=[assertthat copCAR ghyp Matrix mvtnorm pracma zoo]; broken = true; }; + nuggets = derive2 { name="nuggets"; version="1.0.1"; sha256="1y1qamwpz31khq54y62ywras5yznh4g0a9x67x6frsz5pjq4z7vz"; depends=[cli Rcpp rlang testthat tibble tidyr tidyselect]; broken = true; }; nutrientr = derive2 { name="nutrientr"; version="0.1"; sha256="09623rimvy0jd6i26bm8d80jhvgwril9r2vbnlcwznmqr4fr6fhm"; depends=[dplyr ggplot2 httr jsonlite qpdf stringr testthat tibble tidyr tidyselect]; broken = true; }; oaii = derive2 { name="oaii"; version="0.1.8"; sha256="09gjl9x7i1y92frf12bbw7xk3jxvldmnk84shi3h8haabldh5n9w"; depends=[checkmate httr magrittr]; broken = true; }; obliqueRF = derive2 { name="obliqueRF"; version="0.3"; sha256="1bwlgv820mmpc6vg26bsdlfy2p78586i3y42hkzbw3z1fmwq3pz5"; depends=[e1071 mda pls ROCR]; broken = true; }; @@ -22064,6 +22403,8 @@ in with self; { optAUC = derive2 { name="optAUC"; version="1.0"; sha256="0j1llzqa3n7kqw3i5bb7284z0hi6s5jbjfl9zap0l7xf6hg4x1dn"; depends=[MASS]; broken = true; }; optCluster = derive2 { name="optCluster"; version="1.3.2"; sha256="11k6mbkwmvhmcvnc4hgl8aa3j7n7im5g3040dgppahzdndysgnw3"; depends=[cluster gplots kohonen MBCluster_Seq mclust RankAggreg]; broken = true; }; optiRum = derive2 { name="optiRum"; version="0.40.1"; sha256="1kl9mzh53pwhrxbn89dsjjpfji7k8vmysscd1qd9sw7vqdan8g6x"; depends=[AUC data_table ggplot2 knitr plyr scales stringr XML]; broken = true; }; + optiSel = derive2 { name="optiSel"; version="2.0.7"; sha256="0rqwwc33rb4bp8j3m0lqrv8l539h6bbfhlj4gwa07xsdpvkyq4b5"; depends=[data_table doParallel ECOSolveR foreach kinship2 magic MASS Matrix nadiv optiSolve pedigree plyr pspline purrr quadprog Rcpp RcppArmadillo reshape2 stringr]; broken = true; }; + optimr = derive2 { name="optimr"; version="2019-12.16"; sha256="003wz9r3xdi47ad22l4dkhp0dalknb2s9fp82yamjx7x1xbfvcbk"; depends=[numDeriv optextras Rcgmin Rvmmin setRNG]; broken = true; }; optrees = derive2 { name="optrees"; version="1.0"; sha256="1zqpjii8dsfs98n58qpif81ckvyxkr0661svhlbgzi19xb2vszqs"; depends=[igraph]; broken = true; }; orQA = derive2 { name="orQA"; version="0.2.1"; sha256="0vivjrpcbql42y078gi91kfpfdpv73j23jkiv8fpazzwzdi8ydqq"; depends=[genefilter gtools nlme Rcpp]; broken = true; }; orderbook = derive2 { name="orderbook"; version="1.03"; sha256="0dlvjrzdhhh8js4g1lvxs46q7fdxfxavxnb4nj6xlwca75i51675"; depends=[hash lattice]; broken = true; }; @@ -22077,7 +22418,7 @@ in with self; { outsider = derive2 { name="outsider"; version="0.1.1"; sha256="082yygvjs31clz8b3p59gkc26249gqp8hl1071gm6zi4vi2ng43x"; depends=[crayon curl jsonlite outsider_base remotes tibble yaml]; broken = true; }; outsider_base = derive2 { name="outsider.base"; version="0.1.4"; sha256="1wlr3a14a330r9p4lahdmgs4hbgfsp05rsbzr30djwpv21bfl03a"; depends=[callr cli crayon devtools pkgload sys tibble yaml]; broken = true; }; ouxy = derive2 { name="ouxy"; version="2.1"; sha256="0mdjxg7wm68882hbwl0gg15dld6f90xyf0s6hk2z90r34bvyky0i"; depends=[abc adephylo ape coda EasyABC geiger maps MCMCpack nlme phytools Sim_DiffProc TreeSim]; broken = true; }; - owidR = derive2 { name="owidR"; version="1.4.1"; sha256="0m0nzm3582p996hjs951vmssvhc35dwiw8520b61qs05bxfiiwkj"; depends=[curl dplyr forcats ggplot2 ggrepel htmltools httr jsonlite leaflet lifecycle magrittr purrr readr rlang rvest scales sf stringr xml2]; broken = true; }; + overlap = derive2 { name="overlap"; version="0.3.4.1"; sha256="0gr0qaay97js3qs11lpci2d3smwl0jda2gc8fqvbw6lb5fznf4r1"; depends=[]; broken = true; }; oxcgrt = derive2 { name="oxcgrt"; version="0.1.0"; sha256="006kdggqdy7nkllln5p7fsapmmn5wlampyw2ifc4ls9jbz0p5h16"; depends=[countrycode dplyr jsonlite magrittr stringr tibble tidyr]; broken = true; }; p2distance = derive2 { name="p2distance"; version="1.0.1"; sha256="1ims8i5z5k97kjpdysgx8g7lgvnvf7amahcrssw7bk38bvbxawni"; depends=[]; broken = true; }; pGMGM = derive2 { name="pGMGM"; version="1.0"; sha256="1hkczz38g8a8253jm8vhm8948fs91g6b2rfzkz47srkkby9ksa4x"; depends=[JGL MASS mvtnorm]; broken = true; }; @@ -22085,12 +22426,14 @@ in with self; { packClassic = derive2 { name="packClassic"; version="0.5.2"; sha256="04a1sg9vx3r0sq54q9kj0kpahp6my246jy3bivgy09g5fjk0dmkj"; depends=[]; broken = true; }; packS4 = derive2 { name="packS4"; version="0.9.3"; sha256="0kkh4lfdbr2ydyfpymwrdkms1d4mj8430p6vxvj5wrgl4vh85gwd"; depends=[codetools]; broken = true; }; paf = derive2 { name="paf"; version="1.0"; sha256="0wrqn67jfrjjxwcrkka6dljgi3mdk00vfjkzzcv2v7c97gx1zvwn"; depends=[survival]; broken = true; }; + pageviews = derive2 { name="pageviews"; version="0.5.0"; sha256="1fhlm2y288wx625y0glxybjb0xv9sqvvln35jqlwqq38h3grcpqd"; depends=[curl httr jsonlite]; broken = true; }; pairedCI = derive2 { name="pairedCI"; version="0.5-4"; sha256="03wf526n3bbr2ai44zwrdhbfx99pxq1nbng9wsbndrdg2ji4dar2"; depends=[]; broken = true; }; pairheatmap = derive2 { name="pairheatmap"; version="1.0.1"; sha256="1awmqr5n9gbqxadkblpxwcjl9hm73019bwwfwy1f006jpn050d6l"; depends=[]; broken = true; }; pairwiseComparisons = derive2 { name="pairwiseComparisons"; version="3.1.6"; sha256="0aiq8gr33pr5lia6cf6ak7zy5z81am5j5a0py0a2m9ljgmsgmn4s"; depends=[BayesFactor dplyr insight ipmisc parameters PMCMRplus purrr rlang WRS2]; broken = true; }; paleoMAS = derive2 { name="paleoMAS"; version="2.0-1"; sha256="1hhb5wbj4m3ch8wnvd1zkl5bk6wa9nl6jl1dhm4z6yqkh29yn9z6"; depends=[lattice MASS vegan]; broken = true; }; paleobioDB = derive2 { name="paleobioDB"; version="0.7.0"; sha256="0hgf0ns4mp2war254ysb9rcm4kij1d3xrwkr4s4n2h5in8dz23iq"; depends=[gtools maps plyr raster RCurl rjson scales]; broken = true; }; paleofire = derive2 { name="paleofire"; version="1.2.4"; sha256="1vgai4my6kl0fldghp6a1qr8xhxiyw137kd80d0zir6q47nlnc2x"; depends=[GCD ggplot2 lattice locfit plyr raster rgdal]; broken = true; }; + paleopop = derive2 { name="paleopop"; version="2.1.5"; sha256="1mq7skw5k3b9gc2jkjsdq96ih3qwywwdsq1948101cl0ryh3aadn"; depends=[poems R6 sf trend]; broken = true; }; palmid = derive2 { name="palmid"; version="0.0.3"; sha256="0bh0p7alcbqkingxbg8gai7bch2cv8q90sfw92y7vj857nl09fh7"; depends=[DBI dbplyr downloadthis dplyr DT ggExtra ggplot2 ggplotify ggwordcloud gridExtra htmltools htmlwidgets leaflet plotly rmarkdown RPostgreSQL scales viridisLite]; broken = true; }; pamctdp = derive2 { name="pamctdp"; version="0.3.2"; sha256="0qs8lj5g2fx5rfd0afv76x9x7wqm333qmjv6zzip6pf11dzkghyj"; depends=[ade4 FactoClass xtable]; broken = true; }; panelAR = derive2 { name="panelAR"; version="0.1"; sha256="1ka2rbl9gs65xh2y2m4aqwh5qj4szibjy101hqfmza9wmdh25gpq"; depends=[car]; broken = true; }; @@ -22098,7 +22441,6 @@ in with self; { parallelML = derive2 { name="parallelML"; version="1.2"; sha256="05j0rb81i8342m8drwgmgi1w30q96yf501d83cdq4zhjbchphbl1"; depends=[doParallel foreach]; broken = true; }; param6 = derive2 { name="param6"; version="0.2.4"; sha256="0h4r2l670zvsbq0cakbm7f5yc0ghaf40kby80q3ql8lwgfnay1jd"; depends=[checkmate data_table dictionar6 R6 set6]; broken = true; }; parboost = derive2 { name="parboost"; version="0.1.4"; sha256="087b4as0w8bckwqpisq9mllvm523vlxmld3irrms13la23z6rjvf"; depends=[caret doParallel glmnet iterators mboost party plyr]; broken = true; }; - parcats = derive2 { name="parcats"; version="0.0.4"; sha256="1dqkkmwfvpz5lkskii1z3lx2xw2jy3rhh2skrg7mc8kv8z3m9i2h"; depends=[dplyr easyalluvial forcats htmlwidgets magrittr purrr stringr tibble tidyr]; broken = true; }; parcoords = derive2 { name="parcoords"; version="1.0.0"; sha256="15w0g789a2igagfrgv1978ib4ipxpfkid5jpj4q344mpdvgp6ip2"; depends=[crosstalk htmlwidgets]; broken = true; }; partialAR = derive2 { name="partialAR"; version="1.0.12"; sha256="0fv1ffgqdbl04b4cmfmvzwah8ms9cxx3dsdralkk92bxxhybcjsl"; depends=[data_table ggplot2 KFAS MASS plot3D Rcpp tseries urca zoo]; broken = true; }; partialCI = derive2 { name="partialCI"; version="1.2.0"; sha256="0hi936yg4g5bg61ix2i68f8q4c5nvvshl2728ynz1rl970qfcrp7"; depends=[data_table ggplot2 glmnet KFAS MASS partialAR Rcpp TTR zoo]; broken = true; }; @@ -22108,6 +22450,7 @@ in with self; { pastis = derive2 { name="pastis"; version="0.1-2"; sha256="0211pzj3xrmqgxjpspij95kmlpa2klpicw49n6pnz2g1fapjy2bd"; depends=[ape caper]; broken = true; }; patPRO = derive2 { name="patPRO"; version="1.1.0"; sha256="1l6q6glklmfgivs4gw0v8q4qa57wr2bna477sn2v401hcwmgnfyn"; depends=[ggplot2 gridExtra plyr RColorBrewer reshape2]; broken = true; }; pathlibr = derive2 { name="pathlibr"; version="0.1.0"; sha256="0z8iz765fi1s2770p7dwwv2anihfw86kb5dwg081wb6474wiq6v8"; depends=[glue logging magrittr purrr R6 rlang]; broken = true; }; + pathmapping = derive2 { name="pathmapping"; version="1.0.2"; sha256="0kx4wxf6lhi58sif8fzr5w4wa0i5253fq4v0ynp721fv1hkvmhvz"; depends=[]; broken = true; }; pauwels2014 = derive2 { name="pauwels2014"; version="1.0"; sha256="1b7whn13lgydc69kg1fhnwkxirw0nqq75cfvii0yg0j4p8r1lw42"; depends=[deSolve ggplot2]; broken = true; }; pbdBASE = derive2 { name="pbdBASE"; version="0.5-3"; sha256="1f90bk1mp1s03177b9g5w5ni77jzrzc1pl3bjx0w0fjbjs1myn79"; depends=[pbdMPI pbdSLAP]; broken = true; }; pbdPROF = derive2 { name="pbdPROF"; version="0.4-0"; sha256="174jwrkvw5qz1430y6id01w1czlw45j1yw8a8dyw36knrmvmdz10"; depends=[]; broken = true; }; @@ -22119,29 +22462,34 @@ in with self; { peacots = derive2 { name="peacots"; version="1.3"; sha256="128qpz06b0giz80lp9yq9l6pxcjglfr97yickg7z64vzzl2jilmq"; depends=[]; broken = true; }; peakPick = derive2 { name="peakPick"; version="0.11"; sha256="1zf7ff9arm4hkdxrfhb0p8p7npd51icy773g2raaqsfys825xwhm"; depends=[matrixStats]; broken = true; }; penDvine = derive2 { name="penDvine"; version="0.2.4"; sha256="0znpvsr7zy2wgy7znha1qiajcrz1z6mypi3f5hpims33z7npa7dl"; depends=[doParallel fda foreach lattice latticeExtra Matrix quadprog TSP]; broken = true; }; - pepr = derive2 { name="pepr"; version="0.4.0"; sha256="0mnigx4lpl397k526sxp7ckrnp59hfrnm9gqcq0nx6j5d7379sp9"; depends=[data_table pryr stringr yaml]; broken = true; }; - perARMA = derive2 { name="perARMA"; version="1.6"; sha256="0k70lcqhiiffrwzvh51asnhx68qxpnjnxadarvgpgbc7kfy7lv9x"; depends=[corpcor gnm matlab Matrix signal]; broken = true; }; perccal = derive2 { name="perccal"; version="1.0"; sha256="1akak068d0g70amj5sbvnqbywzy21l4wz11mhp71b7cp4xmr9n12"; depends=[Rcpp RcppArmadillo RcppEigen]; broken = true; }; + percentiles = derive2 { name="percentiles"; version="0.2.2"; sha256="08gzl2qq0856nj20bdxl3r0a7p5f4cjmvxkaqkjvq4n275ghvskq"; depends=[assertive_types assertthat dplyr R6]; broken = true; }; permGPU = derive2 { name="permGPU"; version="0.15"; sha256="1bxydc5dw7ka45k6ban35d5xb1dw9yq9480qns8b39cc0x3acmhc"; depends=[Biobase foreach RUnit survival]; broken = true; }; persiandictionary = derive2 { name="persiandictionary"; version="1.0"; sha256="0rgi36ngpiax3p5zk4cdgf3463vgx7zg5wxscs2j7834yh37jwax"; depends=[]; broken = true; }; personograph = derive2 { name="personograph"; version="0.1.3"; sha256="07lrlbw4222l1d5rwn0hfqliyk8sqjf6ipz4n2zwcbk113bb8sy7"; depends=[grImport]; broken = true; }; - pexm = derive2 { name="pexm"; version="1.1.2"; sha256="1asw7z2dr9bqsxzfjyj0hf1zfym743315597ds2h3xvwwvsirwzj"; depends=[coda msm rjags]; broken = true; }; pfocal = derive2 { name="pfocal"; version="1.0.0"; sha256="1flpzwv66q5rx6y2irck589svx7kmrcbymb6pn5s7p269skxh0p4"; depends=[Rcpp]; broken = true; }; + pguIMP = derive2 { name="pguIMP"; version="0.0.0.3"; sha256="1kdwpykyxxd1zy531smijdd1n74a12pkxc9ld4pa3jcxih71xl0y"; depends=[bbmle DataVisualizations dbscan dplyr DT e1071 finalfit ggplot2 ggthemes gridExtra Hmisc magrittr MASS mice nortest outliers plotly psych purrr R6 rcompanion readr readxl rJava rlang rmarkdown robust RWeka shiny shinydashboard shinyjs shinyWidgets stringr tibble tidyr tidyselect VIM writexl]; broken = true; }; ph2rand = derive2 { name="ph2rand"; version="0.1.0"; sha256="0k6azygcvzkirjx3vpx6kbhax1yai8r467kmmnvhh3p0v46mc5zp"; depends=[dplyr ggplot2 Rcpp scales tibble tidyr]; broken = true; }; phenability = derive2 { name="phenability"; version="2.0"; sha256="0can8qgdpfr4h6jfg23cnwh7hhmwv6538wg2jla9w138la7rhpd1"; depends=[calibrate]; broken = true; }; + phonfieldwork = derive2 { name="phonfieldwork"; version="0.0.11"; sha256="0a5qnl1r8g0h1nsp22awp6hy0lkdi6adc729grpz8mbniz4vdlkc"; depends=[phonTools rmarkdown tuneR uchardet xml2]; broken = true; }; phyloland = derive2 { name="phyloland"; version="1.3"; sha256="10g40m6n2s4qvnzlqcwpy3k0j7bxdp79f586jj910b8p00ymrksp"; depends=[ape]; broken = true; }; physx = derive2 { name="physx"; version="1.0"; sha256="1b6bx08jzfg4pxicawkn013bqrvqkp19pigxl3iwjrqclvi8mx73"; depends=[celestial cubature data_table docore MASS pracma Rcpp]; broken = true; }; phytotools = derive2 { name="phytotools"; version="1.0"; sha256="049znviv2vvzv23biy1l28axm7bc7biwmq4bnn0cnjqgkk48ysz3"; depends=[FME insol]; broken = true; }; + piglet = derive2 { name="piglet"; version="1.0.1"; sha256="09l2qj8naalk8ywkmx0wmk82jllyd60g373jvy619kz7ad9dc1xp"; depends=[alakazam Biostrings circlize ComplexHeatmap data_table DECIPHER dendextend dplyr ggmsa ggplot2 jsonlite magrittr R6 RColorBrewer rlang splitstackshape tigger zen4R]; broken = true; }; pinbasic = derive2 { name="pinbasic"; version="1.2.2"; sha256="0mcw68wrixz2jf62nfifdgg8bnp4h1p3byivz28wi61blj8iaa75"; depends=[fastcluster ggplot2 lubridate Rcpp reshape2 scales]; broken = true; }; pinnacle_API = derive2 { name="pinnacle.API"; version="2.3.3"; sha256="1b6adns1xr3cgcj2mdjvl16cm2vjjgsj2l8m2c47plyc5jh05qmb"; depends=[data_table httr jsonlite magrittr openssl purrr rjson uuid]; broken = true; }; pipenostics = derive2 { name="pipenostics"; version="0.1.7"; sha256="0c0qnh8kjgnmsg8arj7jhpdyjcdm58j9lzwi0yvl7ygk4k2klgv3"; depends=[checkmate]; broken = true; }; pirate = derive2 { name="pirate"; version="1.0.0"; sha256="160mmyqdwbc4g7n7q9i4xcqp6h9bcpcz7vavsgdcpvs2mjfhfpjx"; depends=[ggplot2 MASS plyr Rcpp RcppArmadillo]; broken = true; }; + pirouette = derive2 { name="pirouette"; version="1.6.9"; sha256="1khcfic386pyhxxyzv3c28krc6rpy334cdk1adawx7c87pyvsp16"; depends=[ape babette beastier beautier DDD forcats magrittr mauricer mcbette nodeSub phangorn phytools plyr pryr readr stringr TESS tibble tidyr tracerer xtable]; broken = true; }; + pitchRx = derive2 { name="pitchRx"; version="1.8.2"; sha256="0lg0xab40r8wzrww986l5q9jkg1m83g4bhsbh0kr7f2rv90av662"; depends=[ggplot2 hexbin MASS mgcv plyr XML2R]; broken = true; }; + pkgstats = derive2 { name="pkgstats"; version="0.1.1"; sha256="0cmpr27pfkykwp2dwflixwlz3pf16hajvf3ppwx73k2l492cp75c"; depends=[brio checkmate cpp11 dplyr fs igraph readr sys withr]; broken = true; }; plRasch = derive2 { name="plRasch"; version="1.0"; sha256="1rnpvxw6pzl5f6zp4xl2wfndgvqz5l3kiv9sh4cpvhga0gl8zjaw"; depends=[survival]; broken = true; }; places = derive2 { name="places"; version="0.1.1"; sha256="08w6z5gbsskcbi5j1rml9mi9qdab6w2q58vz80h6xc6bh6mr0fab"; depends=[data_table dplyr geosphere googleway hms rgdal rlang sp stringr tidyr]; broken = true; }; planar = derive2 { name="planar"; version="1.6"; sha256="0x5xdb2afpc1w8s217hy765mz938kg5b5j7vzqzhlsh2dzdjccpj"; depends=[cubature dielectric ggplot2 plyr Rcpp RcppArmadillo reshape2 statmod]; broken = true; }; plmm = derive2 { name="plmm"; version="0.1-1"; sha256="1dfxd1mqqjy2mf7qc6mh4wx5ya9q8fkqgrf01apisb66xxx5zya7"; depends=[Formula nlme sm]; broken = true; }; - plot3logit = derive2 { name="plot3logit"; version="3.1.3"; sha256="0p12xm7i9319h3rx732vh49gzz3f817mdwkp4y8ha6f7pf2fjwz8"; depends=[dplyr ellipse forcats generics ggplot2 ggtern lifecycle magrittr purrr Rdpack stringr Ternary tibble tidyr tidyselect]; broken = true; }; plotKML = derive2 { name="plotKML"; version="0.8-3"; sha256="093nbh2558pmca0vaq1xf5gyfy4p60fzgpkx8hyxifj99zvym50j"; depends=[aqp classInt colorRamps colorspace dismo gstat pixmap plyr raster RColorBrewer rgdal scales sf sp spacetime stars stringr XML zoo]; broken = true; }; + plotRCS = derive2 { name="plotRCS"; version="0.1.4"; sha256="1n5xsbm97i8hfyslv1cfvp3hvkr23yvxfq8rxkryzxyfyklv86is"; depends=[ggplot2 rms]; broken = true; }; + plotrr = derive2 { name="plotrr"; version="1.0.0"; sha256="07ilqpa3ypqb2gpnq23r9v4kkfxz06mcak9si9adr9sf6c7gqwxz"; depends=[dplyr ggplot2]; broken = true; }; plsr = derive2 { name="plsr"; version="0.0.1"; sha256="0l413m49zjpb35v0zw8dlxn53nh7fghinbmwfmldl3jgdvay2s7x"; depends=[boot ggplot2 reshape2 shiny]; broken = true; }; plus = derive2 { name="plus"; version="1.0"; sha256="1l7lvnq7vahj8m7knmr4q3wj00ar7iq89j45a2dqn2bh0qyj68ls"; depends=[]; broken = true; }; plusser = derive2 { name="plusser"; version="0.4-0"; sha256="1g100dh8cvn9q09j0jbkw4xmwjdp1lm4651369975fm99nrlp1j9"; depends=[lubridate plyr RCurl RJSONIO]; broken = true; }; @@ -22152,7 +22500,10 @@ in with self; { pnmtrem = derive2 { name="pnmtrem"; version="1.3"; sha256="0053gg368sdpcw2qzydpq0c5v2cxdlwgf5k68cbw0yx41csjgvz0"; depends=[MASS]; broken = true; }; pnn = derive2 { name="pnn"; version="1.0.1"; sha256="1s6ib60sbdas4720hrsr5lsszsa474kfblqcalsb56c84gkl42ka"; depends=[]; broken = true; }; podr = derive2 { name="podr"; version="0.0.5"; sha256="135nq0dw1x6ngf6mxy3yds3xsxhaf5rnv1cmhavlrklhdfygc0a4"; depends=[assertthat DBI dplyr lubridate magrittr odbc plogr RPostgres rstudioapi shiny stringr tibble]; broken = true; }; + poems = derive2 { name="poems"; version="1.1.0"; sha256="123sq2ixm8qzj6jc95skwl6rr4hiy7dcf34x4mrhqv5sf7k41yzs"; depends=[abc doParallel foreach gdistance geosphere lhs metRology R6 raster trend]; broken = true; }; + poio = derive2 { name="poio"; version="0.0-4"; sha256="12d47hn9rsx2n0fl107dpswfklnh8nkm0kspcxf7yfljayvxr474"; depends=[assertive_base assertive_files assertive_properties assertive_sets assertive_strings assertive_types devtools digest dplyr magrittr purrr R6 stringi tibble whoami]; broken = true; }; poisson = derive2 { name="poisson"; version="1.0"; sha256="1diyf1b84sr6iai3ghd3kcp6fc6w7fan49wzs1lzvxxsmp15ag2d"; depends=[]; broken = true; }; + poker = derive2 { name="poker"; version="0.8.8"; sha256="14ik77440z22k4kwq0p1fn7adzi0p8mh8j8hd7ayinvrab4b5r85"; depends=[]; broken = true; }; polyPK = derive2 { name="polyPK"; version="3.1.0"; sha256="0cb83sq8iz4swr73vwhh8n4k62p6321nsy1sz5fba0wiicycxf55"; depends=[circlize corrplot gplots Hmisc impute imputeLCMD mixOmics pcaMethods pkr plyr ropls sqldf xlsx]; broken = true; }; polyfreqs = derive2 { name="polyfreqs"; version="1.0.2"; sha256="13859vbpys5yj1qiapyzv9wlvi6x6k0rm335bsi1v07ch3x2bh3b"; depends=[Rcpp]; broken = true; }; polyglot = derive2 { name="polyglot"; version="0.3.0"; sha256="1mmmdqaq882qys41lmm009ncg9s9h5x1q8psv0v3pwpar0d7vgff"; depends=[magick pins]; broken = true; }; @@ -22162,8 +22513,11 @@ in with self; { popsom = derive2 { name="popsom"; version="6.0"; sha256="1zjg55fs4j36rp75k0961pndjqd4w085lc7v83nprjpc7jnx45g6"; depends=[fields ggplot2 hash]; broken = true; }; postGIStools = derive2 { name="postGIStools"; version="0.2.4"; sha256="04d6iqnk7j2lgv1h5c94j6y89jk75pmv26sxa51s5iwkjq7rchym"; depends=[DBI jsonlite rgdal rgeos RPostgreSQL sp stringr]; broken = true; }; povcalnetR = derive2 { name="povcalnetR"; version="0.1.1"; sha256="0ah6n3wpjiwyh0mancqqpvyknx25dxr13p0nqnrfzmhfwyaywar0"; depends=[dplyr httr js jsonlite memoise naniar purrr readr stringr tibble tidyr]; broken = true; }; + povmap = derive2 { name="povmap"; version="1.0.0"; sha256="0nqb3ispvljpdb05ps7jwds33n4db2hw4ym5b4ipc20rhdj3g4mr"; depends=[bestNormalize boot formula_tools ggplot2 gridExtra HLMdiag MASS moments MuMIn nlme openxlsx parallelMap readODS reshape2 saeRobust spdep stringr survey]; broken = true; }; powerAnalysis = derive2 { name="powerAnalysis"; version="0.2.1"; sha256="0cma4v402n6wcb2gy9g1ymydzh8vimy9nfrrn8xhnjsf7x6jh215"; depends=[]; broken = true; }; powerHaDeX = derive2 { name="powerHaDeX"; version="1.0"; sha256="188a09jnn8xr5jx1n785gghpn3k8cqkhp76m47gixh5n9v15lzzg"; depends=[checkmate data_table expm ggplot2 glmnet lme4 lmerTest nlme plyr Rcpp signal]; broken = true; }; + powerplus = derive2 { name="powerplus"; version="3.1"; sha256="0ayp6x34hkzgris4j3zbbs0r23n81bhww3wgfyy630ri4sk6brrn"; depends=[complexplus expm MASS Matrix phonTools]; broken = true; }; + ppcong = derive2 { name="ppcong"; version="0.0.2"; sha256="0k34ibzyxak2a8xhsf4jdp50w8k8dsd1nn3gcdcakx8s2rgymq7v"; depends=[curl jsonlite tfse tibble]; broken = true; }; prLogistic = derive2 { name="prLogistic"; version="1.2"; sha256="1abwz7nqkz2qbyqyr603kl9a3rkad3f4vxhck6a9kl80xrmfrj9s"; depends=[boot Hmisc lme4]; broken = true; }; pragma = derive2 { name="pragma"; version="0.1.3"; sha256="1n30a346pph4d8cj4p4qx2l6fnwhkxa8yxdisx47pix376ljpjfx"; depends=[]; broken = true; }; praktikum = derive2 { name="praktikum"; version="0.1"; sha256="0kkydgglvqw371fxh46fi86fmdndhwq1n8qj0ynbh2gz1cn86aw1"; depends=[]; broken = true; }; @@ -22198,6 +22552,8 @@ in with self; { pvsR = derive2 { name="pvsR"; version="0.3"; sha256="1ijmqlcsc8z0aphdd3j37ci8yqsy50wnr2fwn7h8fxbyd12ax2nj"; depends=[httr nnet XML]; broken = true; }; qLearn = derive2 { name="qLearn"; version="1.0"; sha256="1ilxmgazm8gjz8c1hhbp4fccibnvnalxrag8b0rn081zsqmhf094"; depends=[]; broken = true; }; qat = derive2 { name="qat"; version="0.74"; sha256="04n1jnbkf9dzafjh1n5d4q9p7hvyhnr63nmgl51jqxcf3nan5rlx"; depends=[boot fields gdata gplots moments ncdf4 XML]; broken = true; }; + qha = derive2 { name="qha"; version="0.0.8"; sha256="0sdf6g6884wn73i237xkwszg2mq8xddhvyy225qzpplh5za4pnhl"; depends=[ade4 FactoClass FactoMineR]; broken = true; }; + qlcMatrix = derive2 { name="qlcMatrix"; version="0.9.7"; sha256="0iqkcvvy8rxlk0s83sjq57dd6fadb18p5z31lzy0gnzv1hsy1x8y"; depends=[docopt Matrix slam sparsesvd]; broken = true; }; qmix = derive2 { name="qmix"; version="0.1.2.0"; sha256="172lhvj7adphxq9gws2i9lysc9bj1wpk60f4hf2h5sisnli15v0x"; depends=[BH Formula Rcpp RcppEigen rstan StanHeaders]; broken = true; }; qoma_smuggler = derive2 { name="qoma.smuggler"; version="0.0.1"; sha256="03p9i0kr6i3adpb9lcszcmdr9p26nfy7f8hw2sbydazglaw4hscr"; depends=[lubridate rhli tibble]; broken = true; }; qqr = derive2 { name="qqr"; version="0.0.1"; sha256="1vi4nbm356vahm4hnvy686nysbn4n63p9cjd4i9dm73lhsf9ilmn"; depends=[dplyr rvest stringr tidyverse xml2]; broken = true; }; @@ -22236,16 +22592,17 @@ in with self; { rModeling = derive2 { name="rModeling"; version="0.0.3"; sha256="0xrjxayp59f31wwcqqkzs5my2j2lpbv1f4pp709fmqxz02vbdzhv"; depends=[caret e1071 MASS]; broken = true; }; rNMF = derive2 { name="rNMF"; version="0.5.0"; sha256="1nz6h0j5ywdh48m0swmhp34hbkycd7n13rclrxaw85qi9wc42597"; depends=[knitr nnls]; broken = true; }; rRofex = derive2 { name="rRofex"; version="2.0.6"; sha256="0yg3bxadgmn5d7bljzn9bjzy833lfi6bwz24z52f8qcbm1nqchgb"; depends=[dplyr glue httr jsonlite later lifecycle magrittr purrr rlang tibble tidyr websocket]; broken = true; }; - rSPARCS = derive2 { name="rSPARCS"; version="0.1.0"; sha256="0k46nhkdn68c7h7bbbdfwl02bldi1m3m62zbp20kh8np9bxy1rnk"; depends=[data_table geosphere plyr raster sp spatialEco tigris]; broken = true; }; rSQM = derive2 { name="rSQM"; version="1.3.14"; sha256="0m69n2pnfv2085dln6p149a5gw0gif9xk00xmad5s9j68hwjdmym"; depends=[dplyr EcoHydRology ggplot2 gsubfn mise ncdf4 qmap reshape2 stringr yaml zoo]; broken = true; }; rTLS = derive2 { name="rTLS"; version="0.2.5.6"; sha256="0xjcqmjq3s9bfzfzndj2fi3830c3p1rrjr511amp186wmfnslmyd"; depends=[alphashape3d boot data_table doSNOW foreach Rcpp RcppArmadillo RcppHNSW RcppProgress rgeos rgl sp]; broken = true; }; rWBclimate = derive2 { name="rWBclimate"; version="0.1.3"; sha256="0vs56hx7a85pw4jx8nb8bdlr9dbkl4zdhzhqsm0505xc3qz18vxh"; depends=[ggplot2 httr jsonlite plyr reshape2 rgdal sp]; broken = true; }; radix = derive2 { name="radix"; version="0.6"; sha256="0290n0yax8649srdjbq4439h0d9f6jsmxayyhp86igcnszcxilnb"; depends=[base64enc bookdown digest downloader htmltools jsonlite knitr lubridate mime png progress rmarkdown rprojroot rstudioapi stringr whisker xfun xml2 yaml]; broken = true; }; radmixture = derive2 { name="radmixture"; version="0.0.1"; sha256="0rs60xjd43lg5c9972qhpg6bsqfg2578qvrz7gz3bdip10jb1ryj"; depends=[magrittr MCMCpack plyr quadprog]; broken = true; }; + ragt2ridges = derive2 { name="ragt2ridges"; version="0.3.4"; sha256="17i3z0p3a4dqa0bch5l1r830w5nlxhdg71y82jipp6cfiwli588z"; depends=[abind Biobase CGHbase expm fdrtool igraph MASS Matrix mvtnorm rags2ridges Rcpp RcppArmadillo]; broken = true; }; randNames = derive2 { name="randNames"; version="0.2.3"; sha256="0vhzg14yg4c9inzxin8prfzh6nhf8fvbi4hbn122fyqyp5d6f8zi"; depends=[httr jsonlite tibble]; broken = true; }; randaes = derive2 { name="randaes"; version="0.3"; sha256="14803argy0xdd8mpn4v67gbp90qi2is4x6na9zw7i9pm504xji1x"; depends=[]; broken = true; }; randomsearch = derive2 { name="randomsearch"; version="0.2.0"; sha256="0ywr4ms66p5nmq8bzy04gbvmpp0nhfyf8rvynhr2c4alqva9x3yi"; depends=[checkmate fs parallelMap ParamHelpers smoof]; broken = true; }; rangemap = derive2 { name="rangemap"; version="0.1.18"; sha256="17ycliswmsrc1rvyxj2ik2rs7f061dvam6ck0pm6myj52m2xg781"; depends=[concaveman dplyr maps maptools raster rgdal rgeos rgl rnaturalearthdata scales sf sp spatial]; broken = true; }; + rankUncertainty = derive2 { name="rankUncertainty"; version="1.0.2.0"; sha256="0w9b3vdlx2kjviz4790lrmbzb8i1lrckiy1jxzl9kxycp1kjqkwa"; depends=[cpp11 magrittr Rcpp]; broken = true; }; ranlip = derive2 { name="ranlip"; version="1.0.1"; sha256="04jh7m8gmz0b4h507amnj708sg5qf4fzawybss01681hsnb3swnz"; depends=[Rcpp]; broken = true; }; rapbase = derive2 { name="rapbase"; version="1.24.2"; sha256="1fllkd5cp09759jfybls331jlkc6yxh6bp1wlizq949scbgj9j23"; depends=[blob bookdown DBI digest dplyr DT jsonlite kableExtra knitr magrittr readr rlang RMariaDB rmarkdown rpivotTable sendmailR shiny shinyalert sship yaml]; broken = true; }; rareGE = derive2 { name="rareGE"; version="0.1"; sha256="0v3a2wns77q923ilddicqzg0108f8kmfdnsff1n65icin7cfzsny"; depends=[MASS nlme survey]; broken = true; }; @@ -22254,15 +22611,18 @@ in with self; { rawr = derive2 { name="rawr"; version="0.1.3"; sha256="0k0x1pmxs73j6dmjg33n4hhwjwzpnhzbmmmjza6kw7hj6lfmipx4"; depends=[clipr dplyr jsonlite rvest stringr xml2]; broken = true; }; rbace = derive2 { name="rbace"; version="0.2.2"; sha256="04jcbrcp0l1v2q8hhwr5w72spdja8r0fw71v68kx39yigy7m1sgp"; depends=[crul data_table tibble xml2]; broken = true; }; rbefdata = derive2 { name="rbefdata"; version="0.3.5"; sha256="12mcqz0pqgwfw5fmma0gwddj4zk0hpwmrsb74dvzqvgcvpfjnv98"; depends=[RColorBrewer RCurl rjson rtematres wordcloud XML]; broken = true; }; + rbenvo = derive2 { name="rbenvo"; version="1.0.5"; sha256="0clg2cxyi60yz2mdp95v0hd5gqhk8h2xgmx68852jcpbjf76xasa"; depends=[dplyr forcats ggplot2 lme4 lubridate magrittr Matrix purrr rlang sf stringr tidyr]; broken = true; }; rbhl = derive2 { name="rbhl"; version="0.9.2"; sha256="0rs1mmah4yyy5dgz1lvzslm4dk53x0wpiy3742z3hwr8p4agnkqi"; depends=[crul jsonlite plyr tibble xml2]; broken = true; }; rbison = derive2 { name="rbison"; version="1.0.0"; sha256="0g586hsqci4amci10zjq6xpjvxfjr6rv5i63vp85v3z6bkwfamwr"; depends=[crul data_table dplyr ggplot2 jsonlite mapproj plyr sp tibble]; broken = true; }; rbitcoinchartsapi = derive2 { name="rbitcoinchartsapi"; version="1.0.4"; sha256="0r272jvjh3rzch8dmn4s0a5n5k6dsir7pr4qswzfvafqjdiwjajz"; depends=[RCurl RJSONIO]; broken = true; }; + rbokeh = derive2 { name="rbokeh"; version="0.5.2"; sha256="1h2fpzqf17pw9d09r1g1iyxsj5qma4fsk8vnar7f1z4fjyypvi6q"; depends=[digest gistr hexbin htmlwidgets jsonlite lazyeval magrittr maps pryr scales]; broken = true; }; rbundler = derive2 { name="rbundler"; version="0.3.7"; sha256="0wmahn59h9vqm6bq1gwnf6mvfkyhqh6xvdc5hraszn1419asy26f"; depends=[devtools]; broken = true; }; rcage = derive2 { name="rcage"; version="1.2"; sha256="1xa9hdzl3dkrhzjp3bng9pxip9c0crr6zh6iq5916h78nm5k7bir"; depends=[ClustGeo ff fields ggplot2 gridExtra LaplacesDemon MASS Matrix pracma raster rgeos rlang sf sp]; broken = true; }; rcane = derive2 { name="rcane"; version="1.0"; sha256="0p2mgkq6fh0n289n2h19c52lnqxl05wvpmd6nwvgnjqwa4wwpa7r"; depends=[]; broken = true; }; rcanvec = derive2 { name="rcanvec"; version="0.2.1"; sha256="0gsk2cfiysxjw2lrnpl2l524lvhh9nhnyyh79n8p7vykyqj711yn"; depends=[rgdal sp]; broken = true; }; rccdates = derive2 { name="rccdates"; version="1.0.0"; sha256="1f87qlw62am2qy1zzrz91vmsn8axhld44gak61xa7046675hm98s"; depends=[rccmisc]; broken = true; }; rccmisc = derive2 { name="rccmisc"; version="0.3.7"; sha256="171s2ll759xjdnx0z24ih5ix2vcp4qnmf1nf107gij6wv8k450ab"; depends=[dplyr]; broken = true; }; + rchess = derive2 { name="rchess"; version="0.1"; sha256="0qnvvvwcl02rmqra9m7qnhy40cbavswbq6i0jm47x6njmr1gpfhy"; depends=[assertthat dplyr ggplot2 htmlwidgets plyr R6 V8]; broken = true; }; rchie = derive2 { name="rchie"; version="1.0.2"; sha256="1m89mwq5f81yr2vc3wvnxkpm04bad11sx5fllcd3yy8ilghmbfp6"; depends=[jsonlite V8]; broken = true; }; rcitoid = derive2 { name="rcitoid"; version="0.1.0"; sha256="11iqdj1q983w28fh17rqvmhs41ks09b24p408nl7hz4iqg9c7lpi"; depends=[crul curl fauxpas jsonlite]; broken = true; }; rcol = derive2 { name="rcol"; version="0.2.0"; sha256="1ypn5fiwhyvfnmjs2davqqhxf5pjg7f0101v40bqrv4jz563h5n1"; depends=[crul data_table glue jsonlite tibble]; broken = true; }; @@ -22272,6 +22632,9 @@ in with self; { rdaemon = derive2 { name="rdaemon"; version="1.0.6"; sha256="1qr6v7kgk9nd5qp96667x51331xmpp1yz1r190dgd1fqigw735s5"; depends=[base64enc futile_logger Rcpp]; broken = true; }; rdddr = derive2 { name="rdddr"; version="1.0.0"; sha256="0biq1nxfhkbmay70hfp5yg6zakzcdr7rp0x2zpmyq200cwyyr6lm"; depends=[broom dataverse DeclareDesign dplyr estimatr fabricatr generics ggplot2 prediction purrr randomizr readr rlang tibble tidyr]; broken = true; }; rdetools = derive2 { name="rdetools"; version="1.0"; sha256="0pkl990viv7ifr7ihgdcsww93sk2wlzp2cg931wywagfp8dijd02"; depends=[]; broken = true; }; + rdrop2 = derive2 { name="rdrop2"; version="0.8.2.1"; sha256="02rhcq1vn349ddjkqamxb0wjb3z3m4wzkvin1mprcz4fzrjxgbdr"; depends=[assertive digest dplyr httr jsonlite magrittr purrr]; broken = true; }; + read_dbc = derive2 { name="read.dbc"; version="1.0.6"; sha256="0v10fnia615hj6kw3504v455f6k4syy2pilbmvcspk5r6lfs1pcg"; depends=[foreign]; broken = true; }; + readSX = derive2 { name="readSX"; version="0.8.4"; sha256="0g8nwm1vk8spiffnb93a63vq14q6xm2b9wy708qfkriijrn8n52i"; depends=[cli readxl rlang]; broken = true; }; readthat = derive2 { name="readthat"; version="0.0.1"; sha256="04vnpvfa8in3gxi6nv3si59hr8hj17wq3a5n8rnpiaczg46qr1dr"; depends=[curl Rcpp]; broken = true; }; reclin = derive2 { name="reclin"; version="0.1.2"; sha256="0bskmlysc12g5invscr0vvshy8bp1gxjx4wihwbbfzmnk2951qrc"; depends=[dplyr ldat lpSolve lvec Rcpp stringdist]; broken = true; }; recoder = derive2 { name="recoder"; version="0.1"; sha256="0wh0lqp7hfd4lx2xnmszv1m932ax87k810aqxdb6liwbmvwqnfgd"; depends=[stringr]; broken = true; }; @@ -22287,15 +22650,12 @@ in with self; { remoter = derive2 { name="remoter"; version="0.4-0"; sha256="1a7m63l8phv5jnazvdqdrqkaqjwqzaac5y4jm2jn0ypy4n8jvkfl"; depends=[argon2 getPass pbdZMQ png]; broken = true; }; renderthis = derive2 { name="renderthis"; version="0.2.0"; sha256="1hvqwq2w30j29pwjm498mza9zxg8ga5bizm795hmdbz1k30m4j3p"; depends=[cli digest fs jsonlite magick pagedown progress quarto rmarkdown withr xaringan zip]; broken = true; }; replicationInterval = derive2 { name="replicationInterval"; version="2.0.1"; sha256="1jyvyqr8r2fs1cmbz7zjcc8p116bnkslvx27pqi92y5pxgqvsqvr"; depends=[ggplot2 MASS MBESS pbapply]; broken = true; }; - represent = derive2 { name="represent"; version="1.0"; sha256="0jvb40i6r1bh9ysfqwsj7s1g933d7z5fq9d618yjrqr6hbbqsvac"; depends=[]; broken = true; }; rescue = derive2 { name="rescue"; version="1.0.3"; sha256="0wq4ka1a7yhbjwr99ngykhn2r3czn3rqi63r6jn46pz15vnicwad"; depends=[data_table dbscan igraph irlba Matrix reticulate]; broken = true; }; restrictedMVN = derive2 { name="restrictedMVN"; version="1.0"; sha256="0qynkg244gzq0yjb0716w7g1sxdq66i11ss8jij86h2mz3ykj137"; depends=[MASS]; broken = true; }; retistruct = derive2 { name="retistruct"; version="0.6.3"; sha256="1zij37n2ja3yx6n1agdkb3lj42p01parcg6djv60bng9c2qq0wsl"; depends=[foreign geometry png R_matlab R6 rgl RImageJROI RTriangle sp ttutils]; broken = true; }; retractcheck = derive2 { name="retractcheck"; version="1.0.0"; sha256="1c4p8afh9g359s560sswcys3manc0lqvk0aqgvd09p4rpzls2dm7"; depends=[httr plyr textreadr]; broken = true; }; retrocombinator = derive2 { name="retrocombinator"; version="1.0.0"; sha256="0ci5cm9ml2gsn0n0scaahpfi8kyn6i0s3fb4mn7m9s83c0ls6xgv"; depends=[dplyr ggplot2 magrittr Rcpp rlang]; broken = true; }; - retrodesign = derive2 { name="retrodesign"; version="0.2.0"; sha256="1662z7i8r4073klcsva9l2g7kcrsi1a73gd5f9306q20lvmfr2nr"; depends=[]; broken = true; }; reweight = derive2 { name="reweight"; version="1.2.1"; sha256="0fv7q1zb3f4vplg3b5ykb1ydwbzmiajgd1ihrxl732ll8rkkfa4v"; depends=[]; broken = true; }; - rexpokit = derive2 { name="rexpokit"; version="0.26.6.9"; sha256="0ayh4nn031j702sgx3bh9j4psqf80ai4rf3fnmkfp62bxfffci8l"; depends=[Rcpp]; broken = true; }; rfinance = derive2 { name="rfinance"; version="0.1.0"; sha256="0xy4jw50vqbvicpwc3drzgg8ywgpdyxda7bqym52c76vsghcmq2d"; depends=[cli curl data_table dplyr glue httr janitor lubridate magrittr PerformanceAnalytics readr rvest stringr tibble TTR xml2 xts]; broken = true; }; rforensicbatwing = derive2 { name="rforensicbatwing"; version="1.3.1"; sha256="1i521h2nmlkhcxfxqir8jfjv0llwr6cz0ck5w6hzplk48044bn16"; depends=[Rcpp]; broken = true; }; rgdal = derive2 { name="rgdal"; version="1.6-7"; sha256="0cxfmm7niixw3dnbqm7a00603dyqjrphajqx0q5vjpdhmpyysp2m"; depends=[sp]; broken = true; }; @@ -22318,7 +22678,6 @@ in with self; { rkafka = derive2 { name="rkafka"; version="1.4"; sha256="00m9zj2fnd32dhm7gn3fclpmp9r2y06sd8yckdbhlvd784b2d4c9"; depends=[rJava rkafkajars RUnit]; broken = true; }; rknn = derive2 { name="rknn"; version="1.2-1"; sha256="1x9r01314q0wgqwqzd7d13ycjzb4jzghzd3whgjvm2rsmnabai95"; depends=[gmp]; broken = true; }; rld = derive2 { name="rld"; version="1.0"; sha256="1glv4q25z14hcwifwg623h77p4awpsn3nk843pnph4sb3p5qbmn3"; depends=[emdbook MASS survival]; broken = true; }; - rlibkriging = derive2 { name="rlibkriging"; version="0.8-0"; sha256="1lkj74rnl0wb7f0rgqb0zz8p1s8616h2kdz17f7j43kgf3i78hy1"; depends=[DiceKriging Rcpp RcppArmadillo]; broken = true; }; rmaf = derive2 { name="rmaf"; version="3.0.1"; sha256="0w247mamwgibr5576p5c2lzaiz2lv2c25n7gw9q99s7rc4bps7j7"; depends=[]; broken = true; }; rmdshower = derive2 { name="rmdshower"; version="2.1.1"; sha256="1sjpi5ils31adii51gaa8ly7x93l9ganp6in8rsln6si4jc2ppg9"; depends=[rmarkdown]; broken = true; }; rms_gof = derive2 { name="rms.gof"; version="1.0"; sha256="1n0h3nrp11f2x70mfjxpk2f3g4vwjaf4476pjjwy49smxxlxwz82"; depends=[]; broken = true; }; @@ -22346,18 +22705,19 @@ in with self; { rscala = derive2 { name="rscala"; version="3.2.25"; sha256="0nybhx8pblnniinvg74kbgg5bvw7y80ql8frij0178yglpbgrka9"; depends=[]; broken = true; }; rscimark = derive2 { name="rscimark"; version="1.0"; sha256="1jsjz4d5bnxb90qqzz42m4nyvm8d8w8bs0m1r5g2n78zmckqb8vy"; depends=[checkmate]; broken = true; }; rsnps = derive2 { name="rsnps"; version="0.6.0"; sha256="1qslwgqcr4xf5vnrqx02nj84iyq8fhxfsj7yyyl6727v5xvgc12p"; depends=[crul data_table httr jsonlite plyr stringr]; broken = true; }; + rsofun = derive2 { name="rsofun"; version="4.4"; sha256="1vq5hrjqq3ppki5rxd2gl3219p3cxg5ajgr14ynxkyg9sdbmnsb0"; depends=[BayesianTools dplyr GenSA magrittr multidplyr purrr tidyr]; broken = true; }; rsqliteadmin = derive2 { name="rsqliteadmin"; version="1.0.1"; sha256="1d9szm3nsr1q3hqrmapxdlymmgb3655n8v6x2vpcpahg54ajqrp5"; depends=[config data_table disk_frame DT fs golem magrittr RSQLite shiny shinyAce shinydashboard shinyFiles shinyjqui]; broken = true; }; rstoat = derive2 { name="rstoat"; version="1.0.2"; sha256="0npwv33a7axwhnfyz39nh0x5kk4q3chscings3msx532lzvif0cl"; depends=[curl httr jsonlite keyring]; broken = true; }; rsurfer = derive2 { name="rsurfer"; version="0.2"; sha256="14zd8fhak12yha6miwb84085722v5ipk8lagijhc6af291kp70i9"; depends=[gdata stringr]; broken = true; }; rtext = derive2 { name="rtext"; version="0.1.22"; sha256="0wsy0iqzbfin92pw0bqj4bxm2p4f2y4frr137l6c3yvd0jrax3q4"; depends=[digest hellno magrittr R6 Rcpp RSQLite stringb]; broken = true; }; rtsVis = derive2 { name="rtsVis"; version="0.0.3"; sha256="0j48p4cdkd3dwc5bxv8kmmqj38yaq4rz0wp47kx21msbajcw5m3m"; depends=[assertthat dplyr forcats ggplot2 magrittr moveVis pbapply raster RStoolbox sf sp tidyr]; broken = true; }; + ruta = derive2 { name="ruta"; version="1.2.0"; sha256="0nycvy38aci3flrnqns3ppyxph9f57gdpxkpj7jfv871lzd3bkqw"; depends=[keras purrr R_utils tensorflow]; broken = true; }; rvTDT = derive2 { name="rvTDT"; version="1.0"; sha256="09c2fbqnlwkhaxfmgpsdprl0bb447ajk9xl7qdlda201fvxkdc8v"; depends=[CompQuadForm]; broken = true; }; rwt = derive2 { name="rwt"; version="1.0.2"; sha256="17ydpjnhg0glgpvbcwnrmyk49qqvflss1njk044j4f0zk7h0i6wi"; depends=[matlab]; broken = true; }; ryouready = derive2 { name="ryouready"; version="0.4"; sha256="1d9z3paxcrkwsgn5g83x57jwz2iqarks30x0bwg48i5ispw6xbr3"; depends=[car ggplot2 stringr]; broken = true; }; sBF = derive2 { name="sBF"; version="1.1.1"; sha256="0dankakl4rwl9apl46hk57ps4mvn2l1crw4gdqds26fc8w6f6rab"; depends=[]; broken = true; }; sabarsi = derive2 { name="sabarsi"; version="0.1.0"; sha256="14c94zby3jjm6jr28nrg3qp6r6iw68wsb5l5bpd6jjz9pkljrk9i"; depends=[]; broken = true; }; saccades = derive2 { name="saccades"; version="0.1-1"; sha256="138a6g3hjmcyvflpxx1lhgxnb8svrynplrjnvzij7c4bzkp8zip6"; depends=[zoom]; broken = true; }; - saeHB = derive2 { name="saeHB"; version="0.2.1"; sha256="0jlfflpy67y8val89nn29larhw0v9qgsqp3x1sf3h1az9lc7bx5p"; depends=[CARBayesdata coda MASS nimble rjags stringr]; broken = true; }; saeHB_gpois = derive2 { name="saeHB.gpois"; version="0.1.1"; sha256="1zz5xg393fv4r7bczp9ff690ypwspmm5p17p7vsn1vhcfwgx71di"; depends=[coda rjags stringr]; broken = true; }; saeHB_hnb = derive2 { name="saeHB.hnb"; version="0.1.2"; sha256="1c7k0hhg078dmrz9crydh9napiim4r0kw4bv64y63zqbzsgrchm1"; depends=[coda rjags stringr]; broken = true; }; saeHB_spatial = derive2 { name="saeHB.spatial"; version="0.1.0"; sha256="0fqc3c5y4rwfpgfbwfsrdhqlwjbal28wi9djm1vlncr8phkzfpln"; depends=[coda rjags stringr]; broken = true; }; @@ -22368,14 +22728,14 @@ in with self; { sail = derive2 { name="sail"; version="0.1.0"; sha256="1wrh2dam5lblascqd8gl76jks72ys1amz84c6p08y8ykdmn2saq1"; depends=[gglasso glmnet]; broken = true; }; salbm = derive2 { name="salbm"; version="1.0"; sha256="06nizpphyn5q292b2kbsjax0ljw3340n655qwiyp8lvi2zcnl6jy"; depends=[randomForestSRC]; broken = true; }; salem = derive2 { name="salem"; version="0.2.0"; sha256="1pk27d57bmds0jvnvwai2scjy798lb7w6lb84yxl4ccgyn1ldh45"; depends=[]; broken = true; }; - samon = derive2 { name="samon"; version="4.0.1"; sha256="1zhnv7kdpd2zhp6il5x56v4yh5703n1nsnkrysygns4i7xhvcf6z"; depends=[]; broken = true; }; sampSurf = derive2 { name="sampSurf"; version="0.7-6"; sha256="1f2ndfrxz0v0di9sb17rxs3iik2qw2nj1dn7apl55b2d07nsmpk3"; depends=[boot lattice latticeExtra raster rasterVis sp]; broken = true; }; samplingEstimates = derive2 { name="samplingEstimates"; version="0.1-3"; sha256="1srdchlpxksfdqhf5qdvl7nz0qsxkxww7hzqj0q71asbzlq3am3p"; depends=[samplingVarEst]; broken = true; }; + sandwichr = derive2 { name="sandwichr"; version="1.0.4"; sha256="1g5jg8x4a9qdvcrsali2z1zrbrh628nsings1v02gpvfw2qbdb45"; depends=[caret dplyr ggplot2 gridExtra lwgeom sf]; broken = true; }; sapa = derive2 { name="sapa"; version="2.0-3"; sha256="0kj681rd4c2lvqr926lb6f4qwp281x5274dg6vbk8pf5y7s0qlpc"; depends=[ifultools splus2R]; broken = true; }; - sara4r = derive2 { name="sara4r"; version="0.0.9"; sha256="1vfaz4fs0yayf01w0smsnviwhvjz10krfagp4vhy4lmdcs99s00h"; depends=[raster rgdal sp tcltk2]; broken = true; }; satscanMapper = derive2 { name="satscanMapper"; version="1.0.2"; sha256="12vx1gr2z942wrjn6ks4lq9rb9ycnfg2rnl18scglqjqzlbsn9al"; depends=[foreign RColorBrewer SeerMapper sp stringr]; broken = true; }; saves = derive2 { name="saves"; version="0.5"; sha256="1b4mfi2851bwcp0frx079h5yl6y1bhc2s8ziigmr8kwy1y1cxw10"; depends=[]; broken = true; }; sbde = derive2 { name="sbde"; version="1.0-0"; sha256="0m9mcr42bs74bmkyjfzyf01l2784d5bwy5g4ivl8505y8faz946c"; depends=[coda extremefit]; broken = true; }; + scAnnotate = derive2 { name="scAnnotate"; version="0.1.1"; sha256="05akid10d1h8636v5pic4kxn0dby3a864yjwbd5rv6zc4wxq1znr"; depends=[glmnet harmony MTPS Seurat]; broken = true; }; scCAN = derive2 { name="scCAN"; version="1.0.4"; sha256="1w509y629xpqd748k7rghv8plav0jyyigfcf3n2c1m2a6qhh338x"; depends=[FNN purrr scDHA]; broken = true; }; scImmuneGraph = derive2 { name="scImmuneGraph"; version="1.1.3"; sha256="0mvajasskcl4v0bjwzvkqjdicxb0329nxk93ich7qr37wfcp2n1n"; depends=[BiocStyle cowplot dplyr easypackages forcats ggplot2 gtools plyr purrr RColorBrewer readr scales stringr tibble tidyr tidyverse]; broken = true; }; scPOP = derive2 { name="scPOP"; version="0.1.0"; sha256="0bi9dmqj9cd8f09qmfl3d65922xn3j3jipxi6615jbk6bz67kkh9"; depends=[cluster Matrix RANN Rcpp RcppArmadillo]; broken = true; }; @@ -22384,7 +22744,6 @@ in with self; { scenario = derive2 { name="scenario"; version="1.0"; sha256="0v1b00kiny21yx4qkk2x51cy1zqibdnd68z76qia7h5py28yhxsi"; depends=[]; broken = true; }; scopr = derive2 { name="scopr"; version="0.3.4"; sha256="1zskhhbdgijkbh4jrvlfd46q4s8fyycqcgcx3lzyvi5xvv6h0sxg"; depends=[behavr curl data_table memoise readr RSQLite stringr]; broken = true; }; scpm = derive2 { name="scpm"; version="2.0.0"; sha256="1ib46m3i50annp90n2ih4qdxabxik4ngg9j0a5hgspsvk1i4hrvp"; depends=[interp lattice MASS Matrix mvtnorm RandomFields rgl]; broken = true; }; - scrapeR = derive2 { name="scrapeR"; version="0.1.6"; sha256="1rqgqpn9rc43rh356z9gb51pjhdczr9a9mgv0i078nniq156rmlb"; depends=[RCurl XML]; broken = true; }; scriptests = derive2 { name="scriptests"; version="1.0-16"; sha256="11l145gvzkxqwbzw976rq94krly1p4lahqw051dwaacarq4hnrdg"; depends=[]; broken = true; }; sdStaf = derive2 { name="sdStaf"; version="1.0.2"; sha256="0r7lqj30r3f0b18kpahi63zsdizcw2zjf1vvvs04s4cg1djjbcp3"; depends=[dismo dplyr ggplot2 raster rasterVis rgdal rgeos sp tidyr]; broken = true; }; sdat = derive2 { name="sdat"; version="1.1"; sha256="1mxijw2yfblqjvqqb2xrzhfn9c872i1q9ggw24xicvr2fk4lvjw6"; depends=[]; broken = true; }; @@ -22398,9 +22757,8 @@ in with self; { selfmade = derive2 { name="selfmade"; version="0.1"; sha256="0d3v202dqr3c2564g6w7k27mhy1nxx7ngpiai7yxq2s88wa7cydi"; depends=[lme4 Matrix mgcv]; broken = true; }; semPLS = derive2 { name="semPLS"; version="1.0-10"; sha256="0q5linjyv5npkw4grx3vq58iq2q1grf06ikivhkg8w7rvb7pqn6b"; depends=[lattice]; broken = true; }; semdiag = derive2 { name="semdiag"; version="0.1.2"; sha256="0kjcflw7dn907zx6790w7hnf5db6bf549whfsc0c2r173kf13irp"; depends=[sem]; broken = true; }; - sensR = derive2 { name="sensR"; version="1.5-2"; sha256="073za0z6dawba2nd45hs20m0143kckxn3iglkyqz9vdfqwyv7wlq"; depends=[MASS multcomp numDeriv]; broken = true; }; + sen2r = derive2 { name="sen2r"; version="1.6.0"; sha256="1vs4bzf618h5iv3wbn802gdziy55d5p6z9v0cpm07368fhqskxvg"; depends=[data_table doParallel foreach geojsonio httr jsonlite raster RcppTOML sf stars XML]; broken = true; }; sensitivityPStrat = derive2 { name="sensitivityPStrat"; version="1.0-6"; sha256="0rfzvkpz7dll3173gll6np65dyb40zms63fkvaiwn0lk4aryinlh"; depends=[survival]; broken = true; }; - sentryR = derive2 { name="sentryR"; version="1.1.0"; sha256="0kz81dbxg4zyns829cjhjm2g88pxzaaxdk7c8qabvl0zgqys2chy"; depends=[httr jsonlite stringr tibble uuid]; broken = true; }; seplyr = derive2 { name="seplyr"; version="1.0.4"; sha256="09lv2jic2dhwl2pra56kf7087inbjg9b5461dyy2a31h5ji68j08"; depends=[dplyr rlang tidyr wrapr]; broken = true; }; seq2R = derive2 { name="seq2R"; version="2.0.0"; sha256="1ynhmfch8w2s0mh55km6v9afn0z3p43ckg79cz08d2z25lv5syrj"; depends=[seqinr]; broken = true; }; seqR = derive2 { name="seqR"; version="1.0.1"; sha256="0a80w7pyf2hbyzlm010xj3xv1dzkdc2w9s48hhfbsig88f497ki7"; depends=[Matrix Rcpp RcppParallel rlang slam]; broken = true; }; @@ -22426,7 +22784,6 @@ in with self; { sideChannelAttack = derive2 { name="sideChannelAttack"; version="1.0-6"; sha256="1xcsy1h8gc8a4f9nzs7zv8x6v55g1pg8vy1kg64iqxm0gnz2f20l"; depends=[ade4 corpcor infotheo MASS mmap]; broken = true; }; sigmaNet = derive2 { name="sigmaNet"; version="1.1.0"; sha256="1i0xikwad9kiyrqxi1klkc4h4hyqfkxr388sw4mrx9pswfpbv3xr"; depends=[htmlwidgets igraph jsonlite RColorBrewer]; broken = true; }; signmedian_test = derive2 { name="signmedian.test"; version="1.5.1"; sha256="05n7a4h2bibv2r64cqschzhjnm204m2lm1yrwxvx17cwdp847hkm"; depends=[]; broken = true; }; - simEd = derive2 { name="simEd"; version="2.0.0"; sha256="0rsagk77qgxfjjkqrg2kv88cg9z3gnjff7k1558psvbvc50d3cmg"; depends=[rstream shape]; broken = true; }; simLife = derive2 { name="simLife"; version="0.5.2"; sha256="1dhrjszfgxr0j4dkc2bwykyj515ji5rkb572nmnyjgkyi652j01v"; depends=[splancs]; broken = true; }; simPATHy = derive2 { name="simPATHy"; version="0.6"; sha256="0xiqcrdnn7pcbhykkjabfym6hqq9hrnjigav8nshs143s9wflw1q"; depends=[ggm graph gRbase htmlwidgets igraph mvtnorm qpgraph R_utils shiny shinydashboard]; broken = true; }; simba = derive2 { name="simba"; version="0.3-5"; sha256="14kqxqavacckl5s1518iiwzrmlgbxz1lxy33y8c9qq7xaln41g9h"; depends=[vegan]; broken = true; }; @@ -22438,8 +22795,8 @@ in with self; { smartR = derive2 { name="smartR"; version="0.62.3"; sha256="0ardb4arhr7qmr30b3ahf7hkwlys9i420bm8h2688phahgfkk0y8"; depends=[caret chron cluster foreign ggplot2 ggrepel ggthemes gridExtra gstat gsubfn gWidgets2 gWidgets2RGtk2 igraph jpeg jsonlite lattice mapdata mapproj maps maptools marmap mtsdi nnls PBSmapping plyr R6 RColorBrewer reshape2 rgdal rgeos rjags ROCR rpart scales shape sp spdep sqldf vegan]; broken = true; }; smco = derive2 { name="smco"; version="0.1"; sha256="1sj3y1x6pc32cwzyhn9gaxs964xh5xl4vw08hsa8kfcxhh2r0s99"; depends=[]; broken = true; }; smds = derive2 { name="smds"; version="1.0"; sha256="0aqf3wfn6mlsl8a32gaf9qdpyxwsx19g6mma8qzgaysdmk6vhbpd"; depends=[MASS]; broken = true; }; + smfsb = derive2 { name="smfsb"; version="1.3"; sha256="1328w7zpwd3nam6ha4bh14g919jjl87v323ijmbp1j71gc64nn2i"; depends=[abind]; broken = true; }; smnet = derive2 { name="smnet"; version="2.1.2"; sha256="17zv02f1g86s55g81anhqrxfgy2biamsw606byxwh9kdc5l4vfv6"; depends=[RSQLite spam SSN]; broken = true; }; - smoothSurv = derive2 { name="smoothSurv"; version="2.5"; sha256="1bhzbbgz3y7a1hifspg2ny4qalz5017wxlry03i5ss47lbpsylij"; depends=[survival]; broken = true; }; snappier = derive2 { name="snappier"; version="0.2.0"; sha256="0pnrmgv42kmw84ajh24as9fqyczcwsnbi8dyq20q4ndynlkrj5rb"; depends=[]; broken = true; }; snht = derive2 { name="snht"; version="1.0.5"; sha256="0k8w1118b2qrf5zfi902gm6zf7b1mwv7py7wg57vsibh2r2ra8ah"; depends=[ggplot2 gridExtra mgcv plyr reshape2 zoo]; broken = true; }; snp_plotter = derive2 { name="snp.plotter"; version="0.5.1"; sha256="16apsqvkah5l0d5qcwp3lq2jspkb6n62wzr0wskmj84jblx483vv"; depends=[genetics]; broken = true; }; @@ -22456,21 +22813,22 @@ in with self; { space = derive2 { name="space"; version="0.1-1.1"; sha256="09dpksbda4lg5hax47a9h9shjmggza6583slvdj0fldblykpyxck"; depends=[]; broken = true; }; spacey = derive2 { name="spacey"; version="0.1.1"; sha256="1p8kx3d08q9kz1wb286m3d8ckwkhfm5n42m65m4w5gz5kpfx0xfz"; depends=[httr jsonlite magrittr png raster rayshader rgdal]; broken = true; }; spagmix = derive2 { name="spagmix"; version="0.3-5"; sha256="0rjdsg1pl8vpbcyyiqaqgc10h3i0q8xqivpawfaw43ybz15csnzl"; depends=[abind mvtnorm RandomFields sparr spatstat spatstat_core spatstat_geom spatstat_linnet spatstat_random]; broken = true; }; + spamtree = derive2 { name="spamtree"; version="0.2.2"; sha256="1z1dyv6cvcdilqyfpzgl3zr0jmzjn2sznrvypvxx7c8i6qfq8nd0"; depends=[dplyr FNN magrittr Rcpp RcppArmadillo rlang tibble]; broken = true; }; spanel = derive2 { name="spanel"; version="0.1"; sha256="1riyvvfij277mclgik41gyi01qv0k466wyk2wbqqhlvrlj79yzsc"; depends=[]; broken = true; }; sparsebn = derive2 { name="sparsebn"; version="0.1.2"; sha256="1b1601n3nmxck6a27xqxpsa79p4xnz7yyzdfqiddn9zd2b4v9wc5"; depends=[ccdrAlgorithm discretecdAlgorithm sparsebnUtils]; broken = true; }; - spatialEco = derive2 { name="spatialEco"; version="2.0-1"; sha256="1iyym2cb6i7p2wxy8q1yasvlhrl2991mjsnhrv387zjd93lf5kyh"; depends=[sf terra]; broken = true; }; spatialfusion = derive2 { name="spatialfusion"; version="0.6-6"; sha256="14qccp9ca7b7v9w4fj04a99mx6qchfs8588fl16qfdmfbazwnfra"; depends=[deldir fields Rcpp rgeos rstan sp spam]; broken = true; }; spatialnbda = derive2 { name="spatialnbda"; version="1.0"; sha256="14mx5jybymasyia752f3vnr5vmswcavbz8bpqr69vlxphw27qkwk"; depends=[mvtnorm SocialNetworks]; broken = true; }; + spatialprobit = derive2 { name="spatialprobit"; version="1.0.1"; sha256="1r8pn6pmd2aqy7xia2b0935n69zkr4h0dwp6z418jxgbfc7198yl"; depends=[Matrix mvtnorm spatialreg spdep tmvtnorm]; broken = true; }; spatstat_core = derive2 { name="spatstat.core"; version="2.4-4"; sha256="0fyi8y1z919nzn47kaviln7gflhcp5qdi3gfvf7nwkdix3pkk373"; depends=[abind goftest Matrix mgcv nlme rpart spatstat_data spatstat_geom spatstat_random spatstat_sparse spatstat_utils tensor]; broken = true; }; spdplyr = derive2 { name="spdplyr"; version="0.4.0"; sha256="0lijp78wgrky103137vfk3k4s051qppd6jq6s065k9i7y1azbpc1"; depends=[dplyr rlang sp spbabel tibble]; broken = true; }; spe = derive2 { name="spe"; version="1.1.2"; sha256="0xyx42n3gcsgqmy80nc9la6p6gq07anpzx0afwffyx9fv20fvys0"; depends=[]; broken = true; }; speccalt = derive2 { name="speccalt"; version="0.1.1"; sha256="0j7rbidmmx78vgwsqvqjbjjh92fnkf2sdx0q79xlpjl2dph7d6l6"; depends=[]; broken = true; }; specmine = derive2 { name="specmine"; version="3.1.6"; sha256="0ik3nsb9mrja6709fwsf97f9qbf7lmmyc2zqrm7398h3mibf64l7"; depends=[baseline caret compare e1071 ellipse genefilter GGally ggplot2 impute imputeTS MASS Metrics mrbin narray pcaPP plotly pls RColorBrewer readJDX speaq specmine_datasets]; broken = true; }; specmine_datasets = derive2 { name="specmine.datasets"; version="0.0.2"; sha256="0amqb4qy5ac1jc4g95sf4678ll3xhscyrcxq6pgh8imfyk1ifrmx"; depends=[xcms]; broken = true; }; + specs = derive2 { name="specs"; version="0.1.1"; sha256="0x5s7aikj5x1dgxygizh2mcni74hy6dm7084h1pqqbh5ans00c6n"; depends=[Rcpp RcppArmadillo]; broken = true; }; spfrontier = derive2 { name="spfrontier"; version="0.2.5"; sha256="1vnvwcjbhvbmyn5rp4760amzy8k3y156q629fjymw9rw6zy45pbf"; depends=[ezsim moments mvtnorm numDeriv optimx spdep tmvtnorm]; broken = true; }; spftir = derive2 { name="spftir"; version="0.1.0"; sha256="07vw8igy698jx671cj6hmf6ll9xvaq81fb6la7j95pqbd6jl284z"; depends=[pracma]; broken = true; }; spgrass6 = derive2 { name="spgrass6"; version="0.8-9"; sha256="05xvdhisad0d7c69mvahzg6pvgvmb6dph50r34981palykic7qhn"; depends=[sp XML]; broken = true; }; - sphereTessellation = derive2 { name="sphereTessellation"; version="1.1.0"; sha256="0cg21hhgcnnsaiv23j0f3yvalkqzf9z0c7dnpy78ilalyzg29z85"; depends=[BH randomcoloR Rcpp RcppCGAL RcppEigen rgl]; broken = true; }; spiR = derive2 { name="spiR"; version="0.2.1"; sha256="0v3304d0ar6344377m6zd4p6f9m8ibq37i5ys4lnxnw41lhjx1x2"; depends=[dplyr ggplot2 ggsci gsheet lubridate readr reshape2]; broken = true; }; spiders = derive2 { name="spiders"; version="1.2"; sha256="1qklm178bgkgpvrjf024jphsdh9can8300sf0702l4h0rk2daqbq"; depends=[plyr]; broken = true; }; splashr = derive2 { name="splashr"; version="0.6.0"; sha256="0l57w5gwr0p2049z1201nlqsy23h37gsybd1lj3vycxz43ir7213"; depends=[curl dplyr formatR HARtools httr jsonlite lubridate magick openssl purrr scales stevedore stringi xml2]; broken = true; }; @@ -22554,8 +22912,11 @@ in with self; { tcsinvest = derive2 { name="tcsinvest"; version="0.1.1"; sha256="1harmb5ni70k241aq1vww5w7fmjqmlwd6nfma2xa44f3hj7nrf52"; depends=[data_table httr jsonlite websocket]; broken = true; }; tempoR = derive2 { name="tempoR"; version="1.0.4.4"; sha256="0gn16j496833pvbjaf6wx26z9ilwssjp947mcyk6n2jb33x93rr2"; depends=[doParallel foreach pls]; broken = true; }; tensorFun = derive2 { name="tensorFun"; version="0.1.1"; sha256="0ij3dshnj448scws6d2pdw2ik34hbhq9mksmllgy0g8l257a3x8d"; depends=[ClimProjDiags MASS psychTools]; broken = true; }; + tensorr = derive2 { name="tensorr"; version="0.1.1"; sha256="18xdvp328h96jn8y1iayxh7cyz2s8j5nn43nq18pyaxq271hkfyh"; depends=[assertive_base assertive_properties assertive_types Matrix purrr]; broken = true; }; texPreview = derive2 { name="texPreview"; version="2.0.0"; sha256="0lw9yvpw5id9ix5kzv5zw0rlw6098hpjrzx00l0cn37vljmqqg0p"; depends=[base64enc details fs htmltools knitr magick rematch2 rstudioapi svgPanZoom tinytex whisker xml2]; broken = true; }; + textfeatures = derive2 { name="textfeatures"; version="0.3.3"; sha256="0x67kms7ipsadymc9jwja7wymav8y9kc5sbmp2vw4n4l89n32raa"; depends=[dplyr purrr rlang text2vec tfse tibble tokenizers]; broken = true; }; textreadr = derive2 { name="textreadr"; version="1.2.0"; sha256="163ziizi3r00gamdl7wiwy5qsmb4sxlkw64qfij0b4jcr7p1ncqg"; depends=[antiword curl data_table pdftools readxl rvest striprtf textshape xml2]; broken = true; }; + tfse = derive2 { name="tfse"; version="0.5.0"; sha256="05q75xsiy955xwgchagk7l7725y6mylp5lj5284xm7y2xh197zp3"; depends=[dapr magrittr]; broken = true; }; thectar = derive2 { name="thectar"; version="1.0.0"; sha256="1qh0qzg0ybb38kzm56xxlvhm201pdjm16aky5f1fdflcsszgy8mx"; depends=[proxy smacof]; broken = true; }; themetagenomics = derive2 { name="themetagenomics"; version="1.0.2"; sha256="14i81cd9cyzhi3j2d9ygwlairkimhx8ffvva3pg3xwwvpywb6mla"; depends=[ggplot2 lda lme4 Matrix plotly Rcpp rstan scales shiny stm]; broken = true; }; thickmatch = derive2 { name="thickmatch"; version="0.3.1"; sha256="0q7wpilbk8jm3q7m5hb114jpbv4ri1745v9sbdf222l6ymds6pia"; depends=[DiPs MASS plyr rcbalance]; broken = true; }; @@ -22585,6 +22946,7 @@ in with self; { toxtestD = derive2 { name="toxtestD"; version="2.0"; sha256="0b7hmpfhwg626r8il12shni0kw94cqnbj49y4vfh8gn98x1s6m48"; depends=[]; broken = true; }; track = derive2 { name="track"; version="1.1.9"; sha256="1d0hab7xyayyhyyrbv8nvpka1kzry4yx10fg8aqwkca3nm7n2q3c"; depends=[]; broken = true; }; trackr = derive2 { name="trackr"; version="0.10.7"; sha256="0h7ihymdvfvnnyxfxjwshslrxngh3i2ksqvhxynrp46m20mwjavd"; depends=[CodeDepends fastdigest ggplot2 gridGraphics histry htmltools lattice miniUI RJSONIO rlang rmarkdown roprov rsolr shiny]; broken = true; }; + trackter = derive2 { name="trackter"; version="0.1.1"; sha256="11rk53w0y9p0az6ydiq3vy50j1pj4p4cml5dqabrpcgfz4icjkrs"; depends=[data_table dplyr EBImage features ggplot2 jpeg pastecs plyr raster zoo]; broken = true; }; tradepolicy = derive2 { name="tradepolicy"; version="0.6.0"; sha256="1hpynl8klfsid7s8ksz7flzd7jblxx8vz0di9hcw5ppvihgh0jki"; depends=[broom cli crayon dplyr fixest ggplot2 magrittr msm purrr rstudioapi sandwich tibble tidyr]; broken = true; }; traitdataform = derive2 { name="traitdataform"; version="0.6.8"; sha256="0p2i7fqfkq5zq4bvgdk9my31m0r0crqpld3ql1x8y8xyp94a6rsp"; depends=[curl data_table getPass plyr RCurl reshape2 suppdata taxize units XML]; broken = true; }; transcribeR = derive2 { name="transcribeR"; version="0.0.0"; sha256="0y2kxg2da71i962fhsjxsr2ic3b31fmffhj3gg97b0nykfpcviib"; depends=[httr]; broken = true; }; @@ -22599,6 +22961,7 @@ in with self; { treeperm = derive2 { name="treeperm"; version="1.6"; sha256="0mz7p9khrsq4dbkijymfvlwr01y4fvs0x6si4x5xid16s2zsnmm4"; depends=[]; broken = true; }; treeplyr = derive2 { name="treeplyr"; version="0.1.10"; sha256="0k5hblnpbs8h2812blc6crx1j9w9r7lzkz3fraxkn4gdfpfi5100"; depends=[ape dplyr geiger lazyeval phytools Rcpp]; broken = true; }; treetop = derive2 { name="treetop"; version="0.0.5"; sha256="11lyg0izlzzvds8vig8ryicg94ydapr0wgfk5rj2shxqk9mxzfiz"; depends=[geometry lidR pryr raster rasterVis RColorBrewer rgdal rgl sf shiny sp spatstat_explore spatstat_geom stars]; broken = true; }; + tribe = derive2 { name="tribe"; version="0.1.8"; sha256="01z1b9k3j4xi5fp9pkpr991yr7x8vk8vysipy7iwdmdr7xg4w4p0"; depends=[dplyr lazyeval magrittr rlang rstudioapi]; broken = true; }; tricolore = derive2 { name="tricolore"; version="1.2.2"; sha256="0pxahddc3dah4n4xk4i0dkiwvh4wf03gcx8q3nfrsk07zzap1zh1"; depends=[assertthat ggplot2 ggtern shiny]; broken = true; }; trimTrees = derive2 { name="trimTrees"; version="1.2"; sha256="0v75xf5186dy76332x4w7vdwcz7zpqga8mxrb5all2miq2v45fi8"; depends=[mlbench randomForest]; broken = true; }; trioGxE = derive2 { name="trioGxE"; version="0.1-1"; sha256="1ra86l3i7fhb6nsy8izixyvm6z23shv7fcjmnnpil54995j15ax4"; depends=[gtools mgcv msm]; broken = true; }; @@ -22610,6 +22973,7 @@ in with self; { ts2net = derive2 { name="ts2net"; version="0.1.0"; sha256="0f45xnvg09qvcc202dfr9d1a29909gmz863pjyq78mhjj0glijqw"; depends=[dbscan dtw igraph infotheo minerva mmpp nonlinearTseries scales zoo]; broken = true; }; tsc = derive2 { name="tsc"; version="1.0-3"; sha256="1acsdkxizlkix1sskwqv2a80rshw6f14zvcsjhrmmdfd4bmwh36y"; depends=[]; broken = true; }; tsgui = derive2 { name="tsgui"; version="0.2.1"; sha256="0crm2ripxpjaz1cqz9lkj3y9xj4ia0hlq4lvz1rff0wq6d5w79dn"; depends=[RandomFieldsUtils tcltk2 tkrplot]; broken = true; }; + ttTensor = derive2 { name="ttTensor"; version="1.0.1"; sha256="0ryfxx4chnc10cl5h5cb4hnvzf2cm64k8m36l4qbjz4f1vkw0a36"; depends=[Matrix PTAk rTensor tensorr]; broken = true; }; ttwa = derive2 { name="ttwa"; version="0.8.5.1"; sha256="1lhypcwssq0dspizvln3w4dg16ad6mz8cj4w34c5vsrayqid7fyn"; depends=[data_table]; broken = true; }; tukeyGH = derive2 { name="tukeyGH"; version="1.0.0"; sha256="1nlhv8lyjaqq95l7j85bdqdrsphagwf69iq8g3ryyyckchirljjg"; depends=[magrittr minqa Rdpack rootSolve]; broken = true; }; tumblR = derive2 { name="tumblR"; version="1.2"; sha256="1qili2c9wb6hpjjf7m0gyvdymzls5w4pghjkyi3sbp0q7ayhbh12"; depends=[httr RCurl RJSONIO stringr]; broken = true; }; @@ -22617,16 +22981,20 @@ in with self; { tutorial = derive2 { name="tutorial"; version="0.4.3"; sha256="0sxdlpw0w4azlaxdlk36ycrric6pbj2zi4nyv26pgsp0cr1hrx6r"; depends=[base64enc knitr markdown rjson]; broken = true; }; tvd = derive2 { name="tvd"; version="0.1.0"; sha256="07al7gpm81a16q5nppsyc5rhv6zzkcvw72isx955b1q189v073aw"; depends=[Rcpp]; broken = true; }; twiddler = derive2 { name="twiddler"; version="0.5-0"; sha256="0r16nfk2afcw7w0j0n3g0sjs07dnafrp88abwcqg3jyvldp3kxnx"; depends=[]; broken = true; }; + uCAREChemSuiteCLI = derive2 { name="uCAREChemSuiteCLI"; version="0.2.0"; sha256="1nccgkxv57inhgvgmhwm4fr8cp28sj8n83za5gam9xx1f42mzsqk"; depends=[ChemmineR usethis]; broken = true; }; uFTIR = derive2 { name="uFTIR"; version="0.1.4"; sha256="1blgwn6i0dadmr7vml6rbniv103mgr9hgx2dwgcxbagfyv00ah24"; depends=[raster Rcpp RcppArmadillo sp]; broken = true; }; ucbthesis = derive2 { name="ucbthesis"; version="1.0"; sha256="0l855if3a7862lxlnkbx52qa617mby634sbb2gkprj21rwd7lcbp"; depends=[knitr stringr]; broken = true; }; + uchardet = derive2 { name="uchardet"; version="1.1.1"; sha256="0m3xy807smqdxhkhd9cwrcf3ljlyvfmnkd7831qzpgcadam2jcdj"; depends=[]; broken = true; }; udapi = derive2 { name="udapi"; version="0.1.3"; sha256="0qyn6fdh8ia913hn2dl0x99xsm20ps8zm52snswlyb00prinm668"; depends=[curl httr]; broken = true; }; unbalanced = derive2 { name="unbalanced"; version="2.0"; sha256="18hy9nnq42s1viij0a5i9wzrrfmmbf7y3yzjzymz2wnrx4f2pqwv"; depends=[doParallel FNN foreach mlr RANN]; broken = true; }; unfoldr = derive2 { name="unfoldr"; version="0.7.1"; sha256="1khas7d04g4y2kwldnsja5xk1n5mys2s66pln3l0gqlsbk67na12"; depends=[]; broken = true; }; uniftest = derive2 { name="uniftest"; version="1.1"; sha256="0a37m7l3lc6rznx10w9h9krnn5paim2i2wvw47ckwag7bv0d4pm4"; depends=[orthopolynom]; broken = true; }; uplift = derive2 { name="uplift"; version="0.3.5"; sha256="11xikfmg6dg8mhwqq6wq9j9aw4ljh84vywpm9v0fk8r5a1wyy2f6"; depends=[coin MASS penalized RItools tables]; broken = true; }; uplifteval = derive2 { name="uplifteval"; version="0.1.0"; sha256="1gnn40c47rpx40j210bz6fb48d70p6spv3drr8hd5b3vzfz6686c"; depends=[dplyr ggplot2 gridExtra whisker]; broken = true; }; + usdoj = derive2 { name="usdoj"; version="1.1.0"; sha256="0ddvp3qh1ynzzpzq8rgblkb1z5j5jwyzkfgd9xyzdkcby90k7zya"; depends=[anytime dplyr httr jsonlite stringr tibble]; broken = true; }; usethat = derive2 { name="usethat"; version="0.3.0"; sha256="0i6nw3vgll6i31l95iflhq88ssw86pmz46jgw8g6k6f58rgnykmc"; depends=[microservices purrr usethis withr]; broken = true; }; usethis2 = derive2 { name="usethis2"; version="0.2.0"; sha256="0ljvfgwg73y71yvyz2pp4c1rzgiqk1x7kmgswxa1ay05zwdgyi0x"; depends=[microservices purrr usethis withr]; broken = true; }; + utilities = derive2 { name="utilities"; version="0.6.1"; sha256="0wcw9gcxd66vhr7vb24y94bgqckfkwvg1rcsxdqaz5r06qn2p9nf"; depends=[]; broken = true; }; uwo4419 = derive2 { name="uwo4419"; version="0.3.0"; sha256="0hk5qhyarjxz7ngj5ak37vx0rak6xv0hfb4sdrsbci3kv5fqijv7"; depends=[DescTools dplyr ggplot2 gmodels haven magrittr psych RColorBrewer rio tibble tidyr]; broken = true; }; validatedb = derive2 { name="validatedb"; version="0.1.4"; sha256="0lq0d0hcszd2jgip9m5j07lgbc279nxryz5drzv2qaap357ic9l1"; depends=[dbplyr dplyr validate]; broken = true; }; valuer = derive2 { name="valuer"; version="1.1.2"; sha256="0mbwzsvy34ppngyxdzpd9w1r4f00cik4maqab9kpiflrrv9xdp78"; depends=[ggplot2 orthopolynom R6 Rcpp RcppEigen timeDate yuima]; broken = true; }; @@ -22651,7 +23019,6 @@ in with self; { wSVM = derive2 { name="wSVM"; version="0.1-7"; sha256="0c7rblzgagwfb8mmddkc0nd0f9rv6kapw8znpwapv3fv0j2qzq7h"; depends=[MASS quadprog]; broken = true; }; waccR = derive2 { name="waccR"; version="0.1.0"; sha256="092p1bibyqx1gcrch68l9ilzilg5aqf46b6iagm562292cfi074l"; depends=[dplyr lubridate magrittr rvest tibble xml2]; broken = true; }; wahc = derive2 { name="wahc"; version="1.0"; sha256="1324xhajgmxq6dxzpnkcvxdpm2m3g47drhyb2b3h227cn3aakxyg"; depends=[]; broken = true; }; - wallace = derive2 { name="wallace"; version="2.1.0"; sha256="0gql7pwpwdhnqrrqh6qv0zyl8r1pgf5hh3h64rdnap4fhn1id5b9"; depends=[dplyr DT ecospat ENMeval knitcitations leafem leaflet leaflet_extras magrittr RColorBrewer rJava rlang rmarkdown sf shiny shinyalert shinyjs shinyWidgets spocc spThin zip]; broken = true; }; water = derive2 { name="water"; version="0.8"; sha256="0qglf922dlgi41jzz3sivq7ckmzl8axqjfg4klcgnddycmm3ha5j"; depends=[raster rgdal sp]; broken = true; }; wavefunction = derive2 { name="wavefunction"; version="1.0.0"; sha256="1g0g9i0s93lcpcx7icqn15bvkmd79slkgimspvvwp2bxdsc5nnf2"; depends=[]; broken = true; }; weathercan = derive2 { name="weathercan"; version="0.6.2"; sha256="1mr926rymacx1f8k79pwhcyl5xcymq77l4dxaa2ddlrx5cmyh5cv"; depends=[dplyr httr lubridate memoise purrr rappdirs readr rlang rvest stringi stringr tidyr tidyselect xml2]; broken = true; }; @@ -22661,6 +23028,7 @@ in with self; { weco = derive2 { name="weco"; version="1.2"; sha256="1prk8hn782pd8g2rbbaj7y10vjimqs9n8i4rab6aw6fc3k759d6b"; depends=[]; broken = true; }; weibull4 = derive2 { name="weibull4"; version="1.0.0"; sha256="1a95yw67iy7dqib33v31apxmskl019zng66jrlflbqx6p2vjdh30"; depends=[]; broken = true; }; wellknown = derive2 { name="wellknown"; version="0.7.4"; sha256="0d0sxmp58dscfxny1492lgw8x0ypwakmrkkl7rcfs2fz7v26ygj8"; depends=[BH jsonlite Rcpp wk]; broken = true; }; + wikipediatrend = derive2 { name="wikipediatrend"; version="2.1.6"; sha256="11ng7qsb4954mgsz55ix86z0ynh4xgflcp6dzl0y4zi6zdrj87i7"; depends=[ggplot2 glue hellno httr pageviews rvest stringr xml2]; broken = true; }; winRatioAnalysis = derive2 { name="winRatioAnalysis"; version="0.1.0"; sha256="1msvc06bfzw9clinxbvr5fdw38dff0c0xii46182nwnk5kj0libr"; depends=[data_table JM Matrix MLEcens mvtnorm nlme plyr pssm survival]; broken = true; }; wingui = derive2 { name="wingui"; version="0.2"; sha256="0yf6k33qpcjzyb7ckwsxpdw3pcsja2wsf08vaca7qw27yxrbmaa3"; depends=[Rcpp]; broken = true; }; wiseR = derive2 { name="wiseR"; version="1.0.1"; sha256="187ylwhk06957x9zm5r0m6w9wg08im83myz3s4gr927ig8yv3b5f"; depends=[arules bnlearn DescTools dplyr DT graph HydeNet igraph linkcomm missRanger psych RBGL Rgraphviz rhandsontable rintrojs shiny shinyalert shinyBS shinycssloaders shinydashboard shinyWidgets visNetwork]; broken = true; }; diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index 0f766eac54ecc..d39d0c5b8441c 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -1304,7 +1304,7 @@ let substituteInPlace R/zzz.R \ --replace ".onLoad <- function(...) {" \ ".onLoad <- function(...) { - Sys.setenv(\"SPARK_HOME\" = Sys.getenv(\"SPARK_HOME\", unset = \"${pkgs.python3Packages.pyspark}/lib/${pkgs.python3Packages.python.libPrefix}/site-packages/pyspark\")) + Sys.setenv(\"SPARK_HOME\" = Sys.getenv(\"SPARK_HOME\", unset = \"${pkgs.python3Packages.pyspark}/${pkgs.python3Packages.python.sitePackages}/pyspark\")) Sys.setenv(\"JAVA_HOME\" = Sys.getenv(\"JAVA_HOME\", unset = \"${pkgs.jdk}\"))" ''; }); @@ -1344,6 +1344,10 @@ let flowClust = old.flowClust.override { platforms = lib.platforms.x86_64 ++ lib.platforms.x86; }; + httr2 = old.httr2.overrideAttrs (attrs: { + preConfigure = "patchShebangs configure"; + }); + geomorph = old.geomorph.overrideAttrs (attrs: { RGL_USE_NULL = "true"; }); @@ -1357,7 +1361,6 @@ let }); rhdf5filters = old.rhdf5filters.overrideAttrs (attrs: { - propagatedBuildInputs = with pkgs; attrs.propagatedBuildInputs ++ [ (hdf5-blosc.override {hdf5 = self.Rhdf5lib.hdf5;}) ]; patches = [ ./patches/rhdf5filters.patch ]; }); diff --git a/pkgs/development/r-modules/patches/rhdf5filters.patch b/pkgs/development/r-modules/patches/rhdf5filters.patch index 93a99704302a6..da3b92f4cb0e8 100644 --- a/pkgs/development/r-modules/patches/rhdf5filters.patch +++ b/pkgs/development/r-modules/patches/rhdf5filters.patch @@ -1,58 +1,13 @@ diff --git a/src/Makevars.in b/src/Makevars.in -index dead2df..b86e3de 100644 +index 3e55470..656eae4 100644 --- a/src/Makevars.in +++ b/src/Makevars.in -@@ -22,20 +22,19 @@ export PKG_LDFLAGS=@LDFLAGS@ - all: copying $(SHLIB) - - #copy hdf5 library headers to package include --copying: libH5Zblosc.so libH5Zbz2.so libH5Zlzf.so -+copying: libH5Zbz2.so libH5Zlzf.so libH5Zzstd.so - mkdir -p "${USER_LIB_DIR}" - cp ${BZIP2_LIB} "${USER_LIB_DIR}" -- cp ${BLOSC_LIB} "${USER_LIB_DIR}" - cp ${LZF_LIB} "${USER_LIB_DIR}" - # cp ${VBZ_LIB} "${USER_LIB_DIR}" - cp ${ZSTD_LIB} "${USER_LIB_DIR}" -- -+ - #libH5Zvbz.so: libH5Zzstd.so - # $(MAKE) -C vbz - - libH5Zblosc.so: libH5Zzstd.so - $(MAKE) -C blosc -- -+ - libH5Zzstd.so: - $(MAKE) -C zstd - -diff --git a/src/bzip2/Makefile b/src/bzip2/Makefile -index 449bbe7..154354e 100644 ---- a/src/bzip2/Makefile -+++ b/src/bzip2/Makefile -@@ -1,9 +1,9 @@ - - all: libH5Zbz2.so +@@ -15,7 +15,7 @@ export PKG_CXXPICFLAGS=@CXXPICFLAGS@ + export RANLIB=@RANLIB@ + export MAKE=@MAKE@ + export AR=@AR@ +-export PKG_CPPFLAGS=@CPPFLAGS@ -I"@RHDF5_INCLUDE@" ++export PKG_CPPFLAGS=@CPPFLAGS@ + export PKG_LDFLAGS=@LDFLAGS@ --libH5Zbz2.so: bzip2-1.0.8/libbz2.a -- ${CC} ${PKG_CFLAGS} ${PKG_CPICFLAGS} -shared H5Zbzip2.c $(PKG_CPPFLAGS) \ -- -I./bzip2-1.0.8/ ./bzip2-1.0.8/libbz2.a ${PKG_LDFLAGS} -o libH5Zbz2.so -+libH5Zbz2.so: -+ ${CC} ${PKG_CFLAGS} ${PKG_CPICFLAGS} -shared H5Zbzip2.c \ -+ -lbz2 -o libH5Zbz2.so - - bzip2-1.0.8/libbz2.a: - $(MAKE) -C bzip2-1.0.8 -diff --git a/src/lzf/Makefile b/src/lzf/Makefile -index 837f80b..eeca0c8 100644 ---- a/src/lzf/Makefile -+++ b/src/lzf/Makefile -@@ -2,7 +2,7 @@ - all: libH5Zlzf.so - - libH5Zlzf.so: lzf/liblzf.a -- ${CC} ${PKG_CFLAGS} ${PKG_CPICFLAGS} -shared H5Zlzf.c $(PKG_CPPFLAGS) \ -+ ${CC} ${PKG_CFLAGS} ${PKG_CPICFLAGS} -shared H5Zlzf.c \ - -I./lzf/ ./lzf/liblzf.a ${PKG_LDFLAGS} -o libH5Zlzf.so - - lzf/liblzf.a: + all: copying $(SHLIB) diff --git a/pkgs/development/ruby-modules/bundler/default.nix b/pkgs/development/ruby-modules/bundler/default.nix index 05d1bfbf64e64..04e6a6d35a111 100644 --- a/pkgs/development/ruby-modules/bundler/default.nix +++ b/pkgs/development/ruby-modules/bundler/default.nix @@ -4,8 +4,8 @@ buildRubyGem rec { inherit ruby; name = "${gemName}-${version}"; gemName = "bundler"; - version = "2.5.3"; - source.sha256 = "sha256-JJzQdaxPM1rnD3iMm+D0wYgJOk2n0FvVO+K67z8l58s="; + version = "2.5.5"; + source.sha256 = "sha256-E8f+JpAw4qZAKmVMBt7/Aa72dM7WSds76YtVA6CApGI="; dontPatchShebangs = true; postFixup = '' diff --git a/pkgs/development/ruby-modules/gem-config/default.nix b/pkgs/development/ruby-modules/gem-config/default.nix index 97715659be0d7..a0f4effd1fbf9 100644 --- a/pkgs/development/ruby-modules/gem-config/default.nix +++ b/pkgs/development/ruby-modules/gem-config/default.nix @@ -312,7 +312,9 @@ in cp -R ext/fast_mmaped_file_rs $out ''; }; - hash = "sha256-XuQZPbFWqPHlrJvllkvLl1FjKeoAUbi8oKDrS2rY1KM="; + hash = if lib.versionAtLeast attrs.version "1.1.0" + then "sha256-tSyoCEBtMMkFfPynaMx8oc9bO7I+Pf6Y/f3Ld8uwlEE=" + else "sha256-XuQZPbFWqPHlrJvllkvLl1FjKeoAUbi8oKDrS2rY1KM="; }; nativeBuildInputs = [ cargo @@ -320,10 +322,16 @@ in rustPlatform.cargoSetupHook rustPlatform.bindgenHook ]; + disallowedReferences = [ + rustc.unwrapped + ]; preBuild = '' cat ../.cargo/config > ext/fast_mmaped_file_rs/.cargo/config.toml sed -i "s|cargo-vendor-dir|$PWD/../cargo-vendor-dir|" ext/fast_mmaped_file_rs/.cargo/config.toml ''; + postInstall = '' + find $out -type f -name .rustc_info.json -delete + ''; }; glib2 = attrs: { diff --git a/pkgs/development/ruby-modules/gem/default.nix b/pkgs/development/ruby-modules/gem/default.nix index 7ae9168975ab6..409c2c9d027b8 100644 --- a/pkgs/development/ruby-modules/gem/default.nix +++ b/pkgs/development/ruby-modules/gem/default.nix @@ -34,7 +34,7 @@ lib.makeOverridable ( , stdenv ? ruby.stdenv , namePrefix ? (let rubyName = builtins.parseDrvName ruby.name; - in "${rubyName.name}${rubyName.version}-") + in "${rubyName.name}${lib.versions.majorMinor rubyName.version}-") , nativeBuildInputs ? [] , buildInputs ? [] , meta ? {} diff --git a/pkgs/development/tools/allure/default.nix b/pkgs/development/tools/allure/default.nix index 9cbe3cc1034a6..9580a6431fd2e 100644 --- a/pkgs/development/tools/allure/default.nix +++ b/pkgs/development/tools/allure/default.nix @@ -2,7 +2,7 @@ let pname = "allure"; - version = "2.25.0"; + version = "2.27.0"; in stdenv.mkDerivation rec { inherit pname version; @@ -12,7 +12,7 @@ stdenv.mkDerivation rec { src = fetchurl { url = "https://github.com/allure-framework/allure2/releases/download/${version}/allure-${version}.tgz"; - sha256 = "sha256-eR26rvrLla7kcrr/IYKXFlV8jKCwKUjpUj6/oLrz9sA="; + sha256 = "sha256-gasOVDCNxuZlyeDbloV6iL6DAInHPEXHAvnfUfoj+gA="; }; dontConfigure = true; dontBuild = true; diff --git a/pkgs/development/tools/altair-graphql-client/default.nix b/pkgs/development/tools/altair-graphql-client/default.nix index 24f6267b29f01..e745ef3f932cb 100644 --- a/pkgs/development/tools/altair-graphql-client/default.nix +++ b/pkgs/development/tools/altair-graphql-client/default.nix @@ -2,11 +2,11 @@ let pname = "altair"; - version = "6.1.0"; + version = "6.2.0"; src = fetchurl { url = "https://github.com/imolorhe/altair/releases/download/v${version}/altair_${version}_x86_64_linux.AppImage"; - sha256 = "sha256-Au4jsjHhsosawqQCqE0oK4SSIVXuh6P/5m1xCjXSVkw="; + sha256 = "sha256-tDku9PNPCJ3ft7eFq34l90jGOXjHMk8JZcfO8SWJras="; }; appimageContents = appimageTools.extract { inherit pname version src; }; diff --git a/pkgs/development/tools/analysis/brakeman/Gemfile.lock b/pkgs/development/tools/analysis/brakeman/Gemfile.lock index bb45178f79d41..dcc9920bd5347 100644 --- a/pkgs/development/tools/analysis/brakeman/Gemfile.lock +++ b/pkgs/development/tools/analysis/brakeman/Gemfile.lock @@ -1,7 +1,9 @@ GEM remote: https://rubygems.org/ specs: - brakeman (6.1.0) + brakeman (6.1.1) + racc + racc (1.7.3) PLATFORMS ruby @@ -10,4 +12,4 @@ DEPENDENCIES brakeman BUNDLED WITH - 2.4.22 + 2.5.3 diff --git a/pkgs/development/tools/analysis/brakeman/gemset.nix b/pkgs/development/tools/analysis/brakeman/gemset.nix index 31705fe31a6df..fdee80a9ff752 100644 --- a/pkgs/development/tools/analysis/brakeman/gemset.nix +++ b/pkgs/development/tools/analysis/brakeman/gemset.nix @@ -1,12 +1,23 @@ { brakeman = { + dependencies = ["racc"]; groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "00vlip5z1gc1npj1nxvcy2gvwya4fk01xzyhazkhz3ymdn9nch0d"; + sha256 = "1ahkss5xpdw7vwykyd5kba74cs4r987fcn7ad5qvzhzhqdariqvy"; type = "gem"; }; - version = "6.1.0"; + version = "6.1.1"; + }; + racc = { + groups = ["default"]; + platforms = []; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "01b9662zd2x9bp4rdjfid07h09zxj7kvn7f5fghbqhzc625ap1dp"; + type = "gem"; + }; + version = "1.7.3"; }; } diff --git a/pkgs/development/tools/analysis/checkov/default.nix b/pkgs/development/tools/analysis/checkov/default.nix index 156622a568b96..41239585bbec2 100644 --- a/pkgs/development/tools/analysis/checkov/default.nix +++ b/pkgs/development/tools/analysis/checkov/default.nix @@ -5,14 +5,14 @@ python3.pkgs.buildPythonApplication rec { pname = "checkov"; - version = "3.1.57"; + version = "3.2.5"; pyproject = true; src = fetchFromGitHub { owner = "bridgecrewio"; repo = "checkov"; rev = "refs/tags/${version}"; - hash = "sha256-kaGvSIM9aC9gQipk8ik3PxlsmE4f9S6O+/dcJqQzPn4="; + hash = "sha256-28DvlExTH1YELQAgY3d3HrNLCaX2pWiL7l+Y/WQ3z5s="; }; patches = [ diff --git a/pkgs/development/tools/analysis/checkstyle/default.nix b/pkgs/development/tools/analysis/checkstyle/default.nix index 0e881d29fdbb7..84730b8297518 100644 --- a/pkgs/development/tools/analysis/checkstyle/default.nix +++ b/pkgs/development/tools/analysis/checkstyle/default.nix @@ -1,12 +1,12 @@ { lib, stdenvNoCC, fetchurl, makeBinaryWrapper, jre }: stdenvNoCC.mkDerivation rec { - version = "10.12.6"; + version = "10.13.0"; pname = "checkstyle"; src = fetchurl { url = "https://github.com/checkstyle/checkstyle/releases/download/checkstyle-${version}/checkstyle-${version}-all.jar"; - sha256 = "sha256-4oxCnop4ImJs9ltDWso83EsDGeu9WrETEkQzMft5V58="; + sha256 = "sha256-VhEMyn20ubXbsDMHnNS4/E2Aeeyby3U3OV29/uXEQw4="; }; nativeBuildInputs = [ makeBinaryWrapper ]; diff --git a/pkgs/development/tools/analysis/codeql/default.nix b/pkgs/development/tools/analysis/codeql/default.nix index 05ee6c4019db4..10634622fe5ea 100644 --- a/pkgs/development/tools/analysis/codeql/default.nix +++ b/pkgs/development/tools/analysis/codeql/default.nix @@ -2,7 +2,7 @@ stdenv.mkDerivation rec { pname = "codeql"; - version = "2.15.5"; + version = "2.16.1"; dontConfigure = true; dontBuild = true; @@ -10,7 +10,7 @@ stdenv.mkDerivation rec { src = fetchzip { url = "https://github.com/github/codeql-cli-binaries/releases/download/v${version}/codeql.zip"; - hash = "sha256-FkiGyug8kYxiVdsnljwka4PJz5BSFVRVlOOf5pjTvM8="; + hash = "sha256-y9tSG/SxCeyFdWF6gKuPSBgfG5H2uB/XRmQkfMBdKQU="; }; nativeBuildInputs = [ diff --git a/pkgs/development/tools/analysis/cppcheck/default.nix b/pkgs/development/tools/analysis/cppcheck/default.nix index 1a7a1c0f4c957..92256e845a44b 100644 --- a/pkgs/development/tools/analysis/cppcheck/default.nix +++ b/pkgs/development/tools/analysis/cppcheck/default.nix @@ -14,7 +14,7 @@ stdenv.mkDerivation (finalAttrs: { pname = "cppcheck"; - version = "2.13.0"; + version = "2.13.2"; outputs = [ "out" "man" ]; @@ -22,7 +22,7 @@ stdenv.mkDerivation (finalAttrs: { owner = "danmar"; repo = "cppcheck"; rev = finalAttrs.version; - hash = "sha256-+z8mMwI4hHpE3enIriTsxZEocqifppYgjZz3UPGswIo="; + hash = "sha256-jmfZ0OwDdG3s2f5a5UXc1U3utKiSYwUORXfXeZL+LFg="; }; nativeBuildInputs = [ diff --git a/pkgs/development/tools/analysis/flow/default.nix b/pkgs/development/tools/analysis/flow/default.nix index 2f3820c555fd7..21811bd668c70 100644 --- a/pkgs/development/tools/analysis/flow/default.nix +++ b/pkgs/development/tools/analysis/flow/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "flow"; - version = "0.226.0"; + version = "0.228.0"; src = fetchFromGitHub { owner = "facebook"; repo = "flow"; rev = "v${version}"; - hash = "sha256-mWC98FLh5m2gYFlFUjrJBeaFBuNx8fm5ojiidE7c2rU="; + hash = "sha256-JUmDnpa9hvaGBcZR+OOD9R4P06x94zAdXW1SotXlcMc="; }; postPatch = '' diff --git a/pkgs/development/tools/analysis/frama-c/default.nix b/pkgs/development/tools/analysis/frama-c/default.nix index 4b6cadfcfa82d..1bf477cf3d16b 100644 --- a/pkgs/development/tools/analysis/frama-c/default.nix +++ b/pkgs/development/tools/analysis/frama-c/default.nix @@ -20,7 +20,7 @@ let ppx_deriving_yojson ppx_import stdlib-shims - why3 + why3.dev re result seq @@ -45,6 +45,10 @@ stdenv.mkDerivation rec { hash = "sha256-KWEogjMOy27d0LTKOvwEkrcND+szeaG46JMZTG4XOYM="; }; + preConfigure = '' + substituteInPlace src/dune --replace " bytes " " " + ''; + postConfigure = "patchShebangs src/plugins/eva/gen-api.sh"; strictDeps = true; diff --git a/pkgs/development/tools/analysis/ikos/default.nix b/pkgs/development/tools/analysis/ikos/default.nix index 65d5f0e91bd88..50f4f552e0ff9 100644 --- a/pkgs/development/tools/analysis/ikos/default.nix +++ b/pkgs/development/tools/analysis/ikos/default.nix @@ -20,10 +20,18 @@ stdenv.mkDerivation rec { hash = "sha256-scaFkUhCkIi41iR6CGPbEndzXkgqTKMb3PDNvhgVbCE="; }; - patches = fetchpatch { + patches = [ (fetchpatch { url = "https://github.com/NASA-SW-VnV/ikos/commit/2e647432427b3f0dbb639e0371d976ab6406f290.patch"; hash = "sha256-ffzjlqEp4qp76Kwl5zpyQlg/xUMt8aLDSSP4XA4ndS8="; - }; + }) + # Fix build with GCC 13 + # https://github.com/NASA-SW-VnV/ikos/pull/262 + (fetchpatch { + name = "gcc-13.patch"; + url = "https://github.com/NASA-SW-VnV/ikos/commit/73c816641fb9780f0d3b5e448510363a3cf21ce2.patch"; + hash = "sha256-bkeSAtxrL+z+6QNiGOWSg7kN8XiZqMxlJiu5Dquhca0="; + }) + ]; nativeBuildInputs = [ cmake ]; buildInputs = [ boost tbb gmp clang llvm sqlite python diff --git a/pkgs/development/tools/analysis/retdec/default.nix b/pkgs/development/tools/analysis/retdec/default.nix index 3cb64dbc13416..95e95bb34babc 100644 --- a/pkgs/development/tools/analysis/retdec/default.nix +++ b/pkgs/development/tools/analysis/retdec/default.nix @@ -2,8 +2,8 @@ , fetchFromGitHub , fetchpatch , fetchzip +, writeText , lib -, callPackage , openssl , cmake , autoconf @@ -15,131 +15,132 @@ , groff , perl , python3 +, ncurses , time , upx -, ncurses +, gtest , libffi , libxml2 , zlib -, withPEPatterns ? false +, enableTests ? true +, buildDevTools ? true +, compileYaraPatterns ? true }: let + # all dependencies that are normally fetched during build time (the subdirectories of `deps`) + # all of these need to be fetched through nix and applied via their <NAME>_URL cmake variable capstone = fetchFromGitHub { - owner = "avast-tl"; + owner = "capstone-engine"; repo = "capstone"; - rev = "27c713fe4f6eaf9721785932d850b6291a6073fe"; - sha256 = "105z1g9q7s6n15qpln9vzhlij7vj6cyc5dqdr05n7wzjvlagwgxc"; - }; - elfio = fetchFromGitHub { - owner = "avast-tl"; - repo = "elfio"; - rev = "998374baace397ea98f3b1d768e81c978b4fba41"; - sha256 = "09n34rdp0wpm8zy30zx40wkkc4gbv2k3cv181y6c1260rllwk5d1"; - }; - keystone = fetchFromGitHub { # only for tests - owner = "keystone-engine"; - repo = "keystone"; - rev = "d7ba8e378e5284e6384fc9ecd660ed5f6532e922"; - sha256 = "1yzw3v8xvxh1rysh97y0i8y9svzbglx2zbsqjhrfx18vngh0x58f"; - }; - libdwarf = fetchFromGitHub { - owner = "avast-tl"; - repo = "libdwarf"; - rev = "85465d5e235cc2d2f90d04016d6aca1a452d0e73"; - sha256 = "11y62r65py8yp57i57a4cymxispimn62by9z4j2g19hngrpsgbki"; + rev = "5.0-rc2"; + sha256 = "sha256-nB7FcgisBa8rRDS3k31BbkYB+tdqA6Qyj9hqCnFW+ME="; }; llvm = fetchFromGitHub { owner = "avast-tl"; repo = "llvm"; - rev = "725d0cee133c6ab9b95c493f05de3b08016f5c3c"; - sha256 = "0dzvafmn4qs62w1y9vh0a11clpj6q3hb41aym4izpcyybjndf9bq"; - }; - pelib = fetchFromGitHub { - owner = "avast-tl"; - repo = "pelib"; - rev = "a7004b2e80e4f6dc984f78b821e7b585a586050d"; - sha256 = "0nyrb3g749lxgcymz1j584xbb1x6rvy1mc700lyn0brznvqsm81n"; + rev = "2a1f3d8a97241c6e91710be8f84cf3cf80c03390"; + sha256 = "sha256-+v1T0VI9R92ed9ViqsfYZMJtPCjPHCr4FenoYdLuFOU="; }; - rapidjson = fetchFromGitHub { - owner = "Tencent"; - repo = "rapidjson"; - rev = "v1.1.0"; - sha256 = "1jixgb8w97l9gdh3inihz7avz7i770gy2j2irvvlyrq3wi41f5ab"; + yaracpp = fetchFromGitHub { + owner = "VirusTotal"; + repo = "yara"; + rev = "v4.2.0-rc1"; + sha256 = "sha256-WcN6ClYO2d+/MdG06RHx3kN0o0WVAY876dJiG7CwJ8w="; }; - yaracpp = callPackage ./yaracpp.nix {}; # is its own package because it needs a patch yaramod = fetchFromGitHub { - owner = "avast-tl"; + owner = "avast"; repo = "yaramod"; - rev = "v2.2.2"; - sha256 = "0cq9h4h686q9ybamisbl797g6xjy211s3cq83nixkwkigmz48ccp"; - }; - jsoncpp = fetchFromGitHub { - owner = "open-source-parsers"; - repo = "jsoncpp"; - rev = "1.8.4"; - sha256 = "1z0gj7a6jypkijmpknis04qybs1hkd04d1arr3gy89lnxmp6qzlm"; - }; - googletest = fetchFromGitHub { # only for tests - owner = "google"; - repo = "googletest"; - rev = "83fa0cb17dad47a1d905526dcdddb5b96ed189d2"; - sha256 = "1c2r0p9v7vz2vasy8bknfb448l6wsvzw35s8hmc5z013z5502mpk"; + rev = "aa06dd408c492a8f4488774caf2ee105ccc23ab5"; + sha256 = "sha256-NVDRf2U5H92EN/Ks//uxNEaeKU+sT4VL4QyyYMO+zKk="; }; - tinyxml2 = fetchFromGitHub { - owner = "leethomason"; - repo = "tinyxml2"; - rev = "cc1745b552dd12bb1297a99f82044f83b06729e0"; - sha256 = "015g8520a0c55gwmv7pfdsgfz2rpdmh3d1nq5n9bd65n35492s3q"; + keystone = fetchFromGitHub { + # only for tests + owner = "keystone-engine"; + repo = "keystone"; + rev = "d7ba8e378e5284e6384fc9ecd660ed5f6532e922"; + sha256 = "1yzw3v8xvxh1rysh97y0i8y9svzbglx2zbsqjhrfx18vngh0x58f"; }; - retdec-support = let - version = "2018-02-08"; # make sure to adjust both hashes (once with withPEPatterns=true and once withPEPatterns=false) - in fetchzip { - url = "https://github.com/avast-tl/retdec-support/releases/download/${version}/retdec-support_${version}.tar.xz"; - sha256 = if withPEPatterns then "148i8flbyj1y4kfdyzsz7jsj38k4h97npjxj18h6v4wksd4m4jm7" - else "0ixv9qyqq40pzyqy6v9jf5rxrvivjb0z0zn260nbmb9gk765bacy"; - stripRoot = false; - # Removing PE signatures reduces this from 3.8GB -> 642MB (uncompressed) - postFetch = lib.optionalString (!withPEPatterns) '' - rm -r "$out/generic/yara_patterns/static-code/pe" + retdec-support-version = "2019-03-08"; + retdec-support = + { rev = retdec-support-version; } // # for checking the version against the expected version + fetchzip { + url = "https://github.com/avast-tl/retdec-support/releases/download/${retdec-support-version}/retdec-support_${retdec-support-version}.tar.xz"; + hash = "sha256-t1tx4MfLW/lwtbO5JQ1nrFBIOeMclq+0dENuXW+ahIM="; + stripRoot = false; + }; + + check-dep = name: dep: + '' + context="$(grep ${name}_URL --after-context 1 cmake/deps.cmake)" + expected="$(echo "$context" | grep --only-matching '".*"')" + have="${dep.rev}" + + echo "checking ${name} dependency matches deps.cmake..."; + if ! echo "$expected" | grep -q "$have"; then + printf '%s\n' "${name} version does not match!" " nix: $have, expected: $expected" + false + fi ''; - } // { - inherit version; # necessary to check the version against the expected version - }; - # patch CMakeLists.txt for a dependency and compare the versions to the ones expected by upstream - # this has to be applied for every dependency (which it is in postPatch) - patchDep = dep: '' - # check if our version of dep is the same version that upstream expects - echo "Checking version of ${dep.dep_name}" - expected_rev="$( sed -n -e 's|.*URL https://github.com/.*/archive/\(.*\)\.zip.*|\1|p' "deps/${dep.dep_name}/CMakeLists.txt" )" - if [ "$expected_rev" != '${dep.rev}' ]; then - echo "The ${dep.dep_name} dependency has the wrong version: ${dep.rev} while $expected_rev is expected." - exit 1 - fi - - # patch the CMakeLists.txt file to use our local copy of the dependency instead of fetching it at build time - sed -i -e 's|URL .*|URL ${dep}|' "deps/${dep.dep_name}/CMakeLists.txt" - ''; + deps = { + CAPSTONE = capstone; + LLVM = llvm; + YARA = yaracpp; + YARAMOD = yaramod; + SUPPORT_PKG = retdec-support; + } // lib.optionalAttrs enableTests { + KEYSTONE = keystone; + # nixpkgs googletest is used + # GOOGLETEST = googletest; + }; -in stdenv.mkDerivation rec { + # overwrite install-share.py to copy instead of download. + # we use this so the copy happens at the right time in the build, + # otherwise, the build process cleans the directory. + install-share = + writeText + "install-share.py" + '' + import os, sys, shutil, subprocess + + install_path, arch_url, sha256hash_ref, version = sys.argv[1:] + support_dir = os.path.join(install_path, 'share', 'retdec', 'support') + + assert os.path.isdir(arch_url), "nix install-share.py expects a path for support url" + + os.makedirs(support_dir, exist_ok=True) + shutil.copytree(arch_url, support_dir, dirs_exist_ok=True) + subprocess.check_call(['chmod', '-R', 'u+w', support_dir]) + ''; +in +stdenv.mkDerivation (self: { pname = "retdec"; - # If you update this you will also need to adjust the versions of the updated dependencies. You can do this by first just updating retdec - # itself and trying to build it. The build should fail and tell you which dependencies you have to upgrade to which versions. + # If you update this you will also need to adjust the versions of the updated dependencies. # I've notified upstream about this problem here: # https://github.com/avast-tl/retdec/issues/412 - # gcc is pinned to gcc8 in all-packages.nix. That should probably be re-evaluated on update. - version = "3.2"; + # + # The dependencies and their sources are listed in this file: + # https://github.com/avast/retdec/blob/master/cmake/deps.cmake + version = "5.0"; src = fetchFromGitHub { - owner = "avast-tl"; - repo = pname; - rev = "refs/tags/v${version}"; - sha256 = "0chky656lsddn20bnm3pmz6ix20y4a0y8swwr42hrhi01vkhmzrp"; + owner = "avast"; + repo = "retdec"; + rev = "refs/tags/v${self.version}"; + sha256 = "sha256-H4e+aSgdBBbG6X6DzHGiDEIASPwBVNVsfHyeBTQLAKI="; }; + patches = [ + # gcc 13 compatibility: https://github.com/avast/retdec/pull/1153 + (fetchpatch { + url = "https://github.com/avast/retdec/commit/dbaab2c3d17b1eae22c581e8ab6bfefadf4ef6ae.patch"; + hash = "sha256-YqHYPGAGWT4x6C+CpsOSsOIZ+NPM2FBQtGQFs74OUIQ="; + }) + ]; + nativeBuildInputs = [ cmake autoconf @@ -159,64 +160,66 @@ in stdenv.mkDerivation rec { libffi libxml2 zlib - ]; + ] ++ lib.optional self.doInstallCheck gtest; cmakeFlags = [ - "-DRETDEC_TESTS=ON" # build tests - ]; - - # all dependencies that are normally fetched during build time (the subdirectories of `deps`) - # all of these need to be fetched through nix and the CMakeLists files need to be patched not to fetch them themselves - external_deps = [ - (capstone // { dep_name = "capstone"; }) - (elfio // { dep_name = "elfio"; }) - (googletest // { dep_name = "googletest"; }) - (jsoncpp // { dep_name = "jsoncpp"; }) - (keystone // { dep_name = "keystone"; }) - (libdwarf // { dep_name = "libdwarf"; }) - (llvm // { dep_name = "llvm"; }) - (pelib // { dep_name = "pelib"; }) - (rapidjson // { dep_name = "rapidjson"; }) - (tinyxml2 // { dep_name = "tinyxml2"; }) - (yaracpp // { dep_name = "yaracpp"; }) - (yaramod // { dep_name = "yaramod"; }) - ]; - - # Use newer yaramod to fix w/bison 3.2+ - patches = [ - # 2.1.2 -> 2.2.1 - (fetchpatch { - url = "https://github.com/avast-tl/retdec/commit/c9d23da1c6e23c149ed684c6becd3f3828fb4a55.patch"; - sha256 = "0hdq634f72fihdy10nx2ajbps561w03dfdsy5r35afv9fapla6mv"; - }) - # 2.2.1 -> 2.2.2 - (fetchpatch { - url = "https://github.com/avast-tl/retdec/commit/fb85f00754b5d13b781385651db557741679721e.patch"; - sha256 = "0a8mwmwb39pr5ag3q11nv81ncdk51shndqrkm92shqrmdq14va52"; - }) - ]; - - postPatch = (lib.concatMapStrings patchDep external_deps) + '' - # install retdec-support - echo "Checking version of retdec-support" - expected_version="$( sed -n -e "s|^version = '\(.*\)'$|\1|p" 'cmake/install-share.py' )" - if [ "$expected_version" != '${retdec-support.version}' ]; then - echo "The retdec-support dependency has the wrong version: ${retdec-support.version} while $expected_version is expected." - exit 1 - fi - mkdir -p "$out/share/retdec" - cp -r ${retdec-support} "$out/share/retdec/support" # write permission needed during install - chmod -R u+w "$out/share/retdec/support" - # python file originally responsible for fetching the retdec-support archive to $out/share/retdec - # that is not necessary anymore, so empty the file - echo > cmake/install-share.py - - # call correct `time` and `upx` programs - substituteInPlace scripts/retdec-config.py --replace /usr/bin/time ${time}/bin/time - substituteInPlace scripts/retdec-unpacker.py --replace "'upx'" "'${upx}/bin/upx'" - ''; + (lib.cmakeBool "RETDEC_TESTS" self.doInstallCheck) # build tests + (lib.cmakeBool "RETDEC_DEV_TOOLS" buildDevTools) # build tools e.g. capstone2llvmir, retdectool + (lib.cmakeBool "RETDEC_COMPILE_YARA" compileYaraPatterns) # build and install compiled patterns + ] ++ lib.mapAttrsToList (k: v: lib.cmakeFeature "${k}_URL" "${v}") deps; + + preConfigure = + lib.concatStringsSep "\n" (lib.mapAttrsToList check-dep deps) + + + '' + cp -v ${install-share} ./support/install-share.py + + # the CMakeLists assume CMAKE_INSTALL_BINDIR, etc are path components but in Nix, they are absolute. + # therefore, we need to remove the unnecessary CMAKE_INSTALL_PREFIX prepend. + substituteInPlace ./CMakeLists.txt \ + --replace-warn "''$"{CMAKE_INSTALL_PREFIX}/"''$"{RETDEC_INSTALL_BIN_DIR} "''$"{CMAKE_INSTALL_FULL_BINDIR} \ + --replace-warn "''$"{CMAKE_INSTALL_PREFIX}/"''$"{RETDEC_INSTALL_LIB_DIR} "''$"{CMAKE_INSTALL_FULL_LIBDIR} \ + + # --replace "''$"{CMAKE_INSTALL_PREFIX}/"''$"{RETDEC_INSTALL_SUPPORT_DIR} "''$"{RETDEC_INSTALL_SUPPORT_DIR} + # note! Nix does not set CMAKE_INSTALL_DATADIR to an absolute path, so this replacement would be incorrect + + # similarly for yaramod. here, we fix the LIBDIR to lib64. for whatever reason, only "lib64" works. + substituteInPlace deps/yaramod/CMakeLists.txt \ + --replace-fail "''$"{YARAMOD_INSTALL_DIR}/"''$"{CMAKE_INSTALL_LIBDIR} "''$"{YARAMOD_INSTALL_DIR}/lib64 \ + --replace-fail CMAKE_ARGS 'CMAKE_ARGS -DCMAKE_INSTALL_LIBDIR=lib64' + + # yara needs write permissions in the generated source directory. + echo ${lib.escapeShellArg '' + ExternalProject_Add_Step( + yara chmod WORKING_DIRECTORY ''${YARA_DIR} + DEPENDEES download COMMAND chmod -R u+w . + ) + ''} >> deps/yara/CMakeLists.txt + + # patch gtest to use the system package + gtest=deps/googletest/CMakeLists.txt + old="$(cat $gtest)" + (echo 'find_package(GTest REQUIRED)'; echo "$old") > $gtest + sed -i 's/ExternalProject_[^(]\+[(]/ set(IGNORED /g' $gtest + + substituteInPlace $gtest \ + --replace-fail '$'{GTEST_LIB} "GTest::gtest"\ + --replace-fail '$'{GMOCK_LIB} "GTest::gmock"\ + --replace-fail '$'{GTEST_MAIN_LIB} "GTest::gtest_main"\ + --replace-fail '$'{GMOCK_MAIN_LIB} "GTest::gmock_main" + + # without git history, there is no chance these tests will pass. + substituteInPlace tests/utils/version_tests.cpp \ + --replace-quiet VersionTests DISABLED_VersionTests + + substituteInPlace scripts/retdec-utils.py \ + --replace-warn /usr/bin/time ${time} \ + --replace-warn /usr/local/bin/gtime ${time} + substituteInPlace scripts/retdec-unpacker.py \ + --replace-warn "'upx'" "'${upx}'" + ''; - doInstallCheck = true; + doInstallCheck = enableTests; installCheckPhase = '' ${python3.interpreter} "$out/bin/retdec-tests-runner.py" @@ -227,7 +230,7 @@ in stdenv.mkDerivation rec { description = "A retargetable machine-code decompiler based on LLVM"; homepage = "https://retdec.com"; license = licenses.mit; - maintainers = with maintainers; [ dtzWill timokau ]; - platforms = ["x86_64-linux" "i686-linux"]; + maintainers = with maintainers; [ dtzWill katrinafyi ]; + platforms = [ "x86_64-linux" ]; }; -} +}) diff --git a/pkgs/development/tools/analysis/retdec/yaracpp.nix b/pkgs/development/tools/analysis/retdec/yaracpp.nix deleted file mode 100644 index c8bc4ed747b38..0000000000000 --- a/pkgs/development/tools/analysis/retdec/yaracpp.nix +++ /dev/null @@ -1,49 +0,0 @@ -{ stdenv -, fetchFromGitHub -, coreutils -}: - -let - yara = fetchFromGitHub { - owner = "avast-tl"; - repo = "yara"; - rev = "ea101c5856941f39cad2db3012f2660d1d5c8b65"; - sha256 = "033ssx2hql5k4pv9si043s3mjq2b748ymjzif8pg6rdwh260faky"; - }; -in stdenv.mkDerivation rec { - # only fetches the yaracpp source patched to work with a local yara clone, - # does not build anything - pname = "yaracpp-src"; - version = "2018-10-09"; - rev = "b92bde0e59e3b75bc445227e04b71105771dee8b"; # as specified in retdec/deps/yaracpp/CMakeLists.txt - - src = fetchFromGitHub { - inherit rev; - owner = "avast-tl"; - repo = "yaracpp"; - sha256 = "0fan7q79j7s3bjmhsd2nw6sqyi14xgikn7mr2p4nj87lick5l4a2"; - }; - - postPatch = '' - # check if our version of yara is the same version that upstream expects - echo "Checking version of yara" - expected_rev="$( sed -n -e 's|.*URL https://github.com/.*/archive/\(.*\)\.zip.*|\1|p' "deps/CMakeLists.txt" )" - if [ "$expected_rev" != '${yara.rev}' ]; then - echo "The yara dependency has the wrong version: ${yara.rev} while $expected_rev is expected." - exit 1 - fi - - # patch the CMakeLists.txt file to use our local copy of the dependency instead of fetching it at build time - sed -i -e "s|URL .*|URL ${yara}|" "deps/CMakeLists.txt" - - # abuse the CONFIGURE_COMMAND to make the source writeable after copying it to the build locatoin (necessary for the build) - sed -i -e 's|CONFIGURE_COMMAND ""|CONFIGURE_COMMAND COMMAND ${coreutils}/bin/chmod -R u+w .|' "deps/CMakeLists.txt" - ''; - - buildPhase = "# do nothing"; - configurePhase = "# do nothing"; - installPhase = '' - mkdir -p "$out" - cp -r * "$out" - ''; -} diff --git a/pkgs/development/tools/analysis/snyk/default.nix b/pkgs/development/tools/analysis/snyk/default.nix index 10175b1cec6fe..fc5db92cb161b 100644 --- a/pkgs/development/tools/analysis/snyk/default.nix +++ b/pkgs/development/tools/analysis/snyk/default.nix @@ -2,16 +2,16 @@ buildNpmPackage rec { pname = "snyk"; - version = "1.1266.0"; + version = "1.1276.0"; src = fetchFromGitHub { owner = "snyk"; repo = "cli"; rev = "v${version}"; - hash = "sha256-K+62BbiP4GVjxqadIllDBn8pH+cJkbEUVWJTMO7Mn3M="; + hash = "sha256-l5Xx6z3NbtwdtKe8MmRWTJoKaEH3AZjHKXqoLv3rHfU="; }; - npmDepsHash = "sha256-9FLXsIFrNzH42v5y537GrS3C1X91LLh3qu4sPoprNK4="; + npmDepsHash = "sha256-FJGxCEhBADH4c1khJaVFHL4e25Mq4PHrez+2NPFBx0w="; postPatch = '' substituteInPlace package.json --replace '"version": "1.0.0-monorepo"' '"version": "${version}"' diff --git a/pkgs/development/tools/analysis/stylelint/default.nix b/pkgs/development/tools/analysis/stylelint/default.nix index f410359d06e07..23afd1aff86e7 100644 --- a/pkgs/development/tools/analysis/stylelint/default.nix +++ b/pkgs/development/tools/analysis/stylelint/default.nix @@ -2,16 +2,16 @@ buildNpmPackage rec { pname = "stylelint"; - version = "16.1.0"; + version = "16.2.1"; src = fetchFromGitHub { owner = "stylelint"; repo = "stylelint"; rev = version; - hash = "sha256-r6FSPMOvx0SI8u2qqk/ALmlSMCcCb3JlAHEawdGoERw="; + hash = "sha256-ncJ5oCXe23+an2nFOafMEypFUkwRVW3hZf5pWCKkBNE="; }; - npmDepsHash = "sha256-SHZ7nB4//8IAc8ApmmHbeWi954Za6Ryv+bYuHnZ3Ef0="; + npmDepsHash = "sha256-0+jrfXoM6yqkd43lot3JPB+HBTz3XXzqAulGketRsxU="; dontNpmBuild = true; diff --git a/pkgs/development/tools/analysis/tflint-plugins/tflint-ruleset-google.nix b/pkgs/development/tools/analysis/tflint-plugins/tflint-ruleset-google.nix index fefd319523ca1..646cb81d102d4 100644 --- a/pkgs/development/tools/analysis/tflint-plugins/tflint-ruleset-google.nix +++ b/pkgs/development/tools/analysis/tflint-plugins/tflint-ruleset-google.nix @@ -5,16 +5,16 @@ buildGoModule rec { pname = "tflint-ruleset-google"; - version = "0.24.0"; + version = "0.26.0"; src = fetchFromGitHub { owner = "terraform-linters"; repo = pname; rev = "v${version}"; - hash = "sha256-1eF/uzOYP/gi+ooHN8OfCR2nz+/z98theO0Lr/BBhWM="; + hash = "sha256-VQm7pvZCfkZR54UeaPuKogEqhQOy5BAV7WkfwCW3C7c="; }; - vendorHash = "sha256-owpNcsxuP+sG27vv9V7ArMK1NLBNbnw11KpdpVyWAD0="; + vendorHash = "sha256-C52b11cJE2Bu785SNlTsbgNR6Wt/YeY8l1U/9anXrMo="; # upstream Makefile also does a go test $(go list ./... | grep -v integration) preCheck = '' diff --git a/pkgs/development/tools/analysis/tflint/default.nix b/pkgs/development/tools/analysis/tflint/default.nix index afdd4fe022b55..ea7bbb242d36f 100644 --- a/pkgs/development/tools/analysis/tflint/default.nix +++ b/pkgs/development/tools/analysis/tflint/default.nix @@ -10,16 +10,16 @@ buildGoModule rec { pname = "tflint"; - version = "0.50.1"; + version = "0.50.2"; src = fetchFromGitHub { owner = "terraform-linters"; repo = pname; rev = "v${version}"; - hash = "sha256-r/mVLgJudHyNvQa9H9pQ1qhiFx11RikIg4IIz5tC6Us="; + hash = "sha256-MZx8lJTUWrKDXWGlmsCDT4Fjf56GrTJ/byn+htXOFfg="; }; - vendorHash = "sha256-iyJx5dp+NYbaJhZL67ZjFd28ms3vyF38z9P8qJscryQ="; + vendorHash = "sha256-N8J9s9gJEooqrsAUMcC9BZ65qlmpERPoqdknzYZxIIk="; doCheck = false; diff --git a/pkgs/development/tools/analysis/tfsec/default.nix b/pkgs/development/tools/analysis/tfsec/default.nix index bd89d788e8b21..28a780a241016 100644 --- a/pkgs/development/tools/analysis/tfsec/default.nix +++ b/pkgs/development/tools/analysis/tfsec/default.nix @@ -5,13 +5,13 @@ buildGoModule rec { pname = "tfsec"; - version = "1.28.4"; + version = "1.28.5"; src = fetchFromGitHub { owner = "aquasecurity"; repo = "tfsec"; rev = "refs/tags/v${version}"; - hash = "sha256-WMmRCjKBtPT45it6iUQh5D7TBc8glt+dppksBvDhTN4="; + hash = "sha256-zMOAXuMOuWzV5uqzNvw+2DiEA9o/80v7DW5KDhoT/fg="; }; ldflags = [ @@ -22,7 +22,7 @@ buildGoModule rec { # "-extldflags '-fno-PIC -static'" ]; - vendorHash = "sha256-7OTMJhW1Q1z/TOFa4oRCEIPF0cN8gZLdaQglqszXHdw="; + vendorHash = "sha256-nBjlsDFjkqwFBwNnGk8WC+XM5xBuopyrloPlQyOReuY="; subPackages = [ "cmd/tfsec" diff --git a/pkgs/development/tools/api-linter/default.nix b/pkgs/development/tools/api-linter/default.nix index 197628dfafc44..97bda54105966 100644 --- a/pkgs/development/tools/api-linter/default.nix +++ b/pkgs/development/tools/api-linter/default.nix @@ -5,16 +5,16 @@ buildGoModule rec { pname = "api-linter"; - version = "1.63.1"; + version = "1.63.3"; src = fetchFromGitHub { owner = "googleapis"; repo = "api-linter"; rev = "v${version}"; - hash = "sha256-S2SP/Q4iVVrsvTo5pedOwkOXsPGwstz+NM0bltWBa1Y="; + hash = "sha256-mcmp3M9KhZp3j18jh+3v5fwPPLRs2hkrRUN3RM/zCmo="; }; - vendorHash = "sha256-vr/HLcOdzkKGdKJXROaKo070mwg1r2D2m0C3sT2CeQc="; + vendorHash = "sha256-/z2FqMyZnn2A5aajimTS2zw3A1v5v0uYZY81acuQOnw="; subPackages = [ "cmd/api-linter" ]; @@ -23,14 +23,6 @@ buildGoModule rec { "-w" ]; - # reference: https://github.com/googleapis/api-linter/blob/v1.63.1/.github/workflows/release.yaml#L76 - preBuild = '' - cat > cmd/api-linter/version.go <<EOF - package main - const version = "${version}" - EOF - ''; - meta = with lib; { description = "Linter for APIs defined in protocol buffers"; homepage = "https://github.com/googleapis/api-linter/"; diff --git a/pkgs/development/tools/apktool/default.nix b/pkgs/development/tools/apktool/default.nix index b8f252f179234..f475fb54d1cbf 100644 --- a/pkgs/development/tools/apktool/default.nix +++ b/pkgs/development/tools/apktool/default.nix @@ -8,14 +8,14 @@ stdenv.mkDerivation rec { pname = "apktool"; - version = "2.9.2"; + version = "2.9.3"; src = fetchurl { urls = [ "https://bitbucket.org/iBotPeaches/apktool/downloads/apktool_${version}.jar" "https://github.com/iBotPeaches/Apktool/releases/download/v${version}/apktool_${version}.jar" ]; - hash = "sha256-gx8P/Je28g9RHWGDy/Z4VGTTQarLD7fm8i7wx7IokRo="; + hash = "sha256-eVbrBBlDAM4NCoStGHce68lLifuNHdzOjqTAVoGGRvQ="; }; dontUnpack = true; diff --git a/pkgs/development/tools/avro-tools/default.nix b/pkgs/development/tools/avro-tools/default.nix index 59ea3f5b15e65..0868ab8e7f8c2 100644 --- a/pkgs/development/tools/avro-tools/default.nix +++ b/pkgs/development/tools/avro-tools/default.nix @@ -2,12 +2,12 @@ stdenv.mkDerivation rec { pname = "avro-tools"; - version = "1.11.1"; + version = "1.11.3"; src = fetchurl { url = "mirror://maven/org/apache/avro/avro-tools/${version}/${pname}-${version}.jar"; - sha256 = "sha256-uVTnWXbCS3JQkHWxopixhNue/ihzvukJ0CNDL5gm24g="; + sha256 = "sha256-dPaV1rZxxE+G/gB7hEDyiMI7ZbzkTpNEtexp/Y6hrPI="; }; dontUnpack = true; diff --git a/pkgs/development/tools/azcopy/default.nix b/pkgs/development/tools/azcopy/default.nix index 17be1edca98f0..ed7db536bd838 100644 --- a/pkgs/development/tools/azcopy/default.nix +++ b/pkgs/development/tools/azcopy/default.nix @@ -6,13 +6,13 @@ buildGoModule rec { pname = "azure-storage-azcopy"; - version = "10.22.2"; + version = "10.23.0"; src = fetchFromGitHub { owner = "Azure"; repo = "azure-storage-azcopy"; rev = "refs/tags/v${version}"; - hash = "sha256-mC6iAsUmnJeVIJPkoI/pNN6mujALW9qvQ4M7Wk9eLnQ="; + hash = "sha256-Df45DHGA7EM4hx3iAmYNNUHjrUrkW6QniJkHaN7wNZM="; }; subPackages = [ "." ]; diff --git a/pkgs/development/tools/b4/default.nix b/pkgs/development/tools/b4/default.nix index 24da485d863d7..8999d3f4b62a1 100644 --- a/pkgs/development/tools/b4/default.nix +++ b/pkgs/development/tools/b4/default.nix @@ -2,11 +2,11 @@ python3Packages.buildPythonApplication rec { pname = "b4"; - version = "0.12.3"; + version = "0.12.4"; src = fetchPypi { inherit pname version; - hash = "sha256-tk4VBvSnHE6VnUAa3QYCqFLQbsHTJ6Bfqwa1wKEC6mI="; + hash = "sha256-n3mLtthtTN1uAmsmM6dX+Nc7iEo5KzzHiH8iAJmV/Q0="; }; # tests make dns requests and fails diff --git a/pkgs/development/tools/backblaze-b2/default.nix b/pkgs/development/tools/backblaze-b2/default.nix index e37fd54832c2a..e82c32940891f 100644 --- a/pkgs/development/tools/backblaze-b2/default.nix +++ b/pkgs/development/tools/backblaze-b2/default.nix @@ -1,4 +1,7 @@ -{ lib, python3Packages, fetchPypi, installShellFiles, testers, backblaze-b2 }: +{ lib, python3Packages, fetchPypi, installShellFiles, testers, backblaze-b2 +# executable is renamed to backblaze-b2 by default, to avoid collision with boost's 'b2' +, execName ? "backblaze-b2" +}: python3Packages.buildPythonApplication rec { pname = "backblaze-b2"; @@ -68,17 +71,18 @@ python3Packages.buildPythonApplication rec { "test/unit/console_tool" ]; - postInstall = '' - mv "$out/bin/b2" "$out/bin/backblaze-b2" - - installShellCompletion --cmd backblaze-b2 \ - --bash <(${python3Packages.argcomplete}/bin/register-python-argcomplete backblaze-b2) \ - --zsh <(${python3Packages.argcomplete}/bin/register-python-argcomplete backblaze-b2) + postInstall = lib.optionalString (execName != "b2") '' + mv "$out/bin/b2" "$out/bin/${execName}" + '' + + '' + installShellCompletion --cmd ${execName} \ + --bash <(${python3Packages.argcomplete}/bin/register-python-argcomplete ${execName}) \ + --zsh <(${python3Packages.argcomplete}/bin/register-python-argcomplete ${execName}) ''; passthru.tests.version = (testers.testVersion { package = backblaze-b2; - command = "backblaze-b2 version --short"; + command = "${execName} version --short"; }).overrideAttrs (old: { # workaround the error: Permission denied: '/homeless-shelter' # backblaze-b2 fails to create a 'b2' directory under the XDG config path diff --git a/pkgs/development/tools/bazel-watcher/default.nix b/pkgs/development/tools/bazel-watcher/default.nix index 3805111268e43..23d2c904022d5 100644 --- a/pkgs/development/tools/bazel-watcher/default.nix +++ b/pkgs/development/tools/bazel-watcher/default.nix @@ -16,8 +16,8 @@ let rulesProto = fetchFromGitHub { owner = "bazelbuild"; repo = "rules_proto"; - rev = "4.0.0-3.19.2"; - sha256 = "sha256-wdmp+Tmf63PPr7G4X5F7rDas45WEETU3eKb47PFVI6o="; + rev = "4.0.0"; + hash = "sha256-WVPZx14thneAC4PdiDhBibnPwlCKEF9c93CHR0t1Efo="; postFetch = '' sed -i 's|name = "protoc"|name = "_protoc_original"|' $out/proto/private/BUILD.release cat <<EOF >>$out/proto/private/BUILD.release @@ -29,13 +29,13 @@ let in buildBazelPackage rec { pname = "bazel-watcher"; - version = "0.23.1"; + version = "0.24.0"; src = fetchFromGitHub { owner = "bazelbuild"; repo = "bazel-watcher"; rev = "v${version}"; - sha256 = "sha256-fnhbxrgwffFQDIRLGisi1Wk3EjfkN8Mi8wtWT/Gy+78="; + hash = "sha256-ebNHAYKyE3226KiCc2/VSz1OSITuPwuYlAIS3JrWzj0="; }; nativeBuildInputs = [ go git python3 ]; @@ -63,7 +63,7 @@ buildBazelPackage rec { # currently present in PATH. Without removing the go_sdk from the marker # file, the hash of it will change anytime the Go derivation changes and # that would lead to impurities in the marker files which would result in - # a different sha256 for the fetch phase. + # a different hash for the fetch phase. rm -rf $bazelOut/external/{go_sdk,\@go_sdk.marker} sed -e '/^FILE:@go_sdk.*/d' -i $bazelOut/external/\@*.marker @@ -81,7 +81,7 @@ buildBazelPackage rec { rm -rf $bazelOut/external/com_google_protobuf ''; - sha256 = "sha256-7/sLGgUCG4SU2nbK0596467dlrKylewiewhIvNFTMvY="; + sha256 = "sha256-B2KVD/FmkAa7MNhLaH286gF3uA20qjN3CoA83KRB9E8="; }; buildAttrs = { diff --git a/pkgs/development/tools/bearer/default.nix b/pkgs/development/tools/bearer/default.nix index c05f6694a2faa..bc7412c1d72cd 100644 --- a/pkgs/development/tools/bearer/default.nix +++ b/pkgs/development/tools/bearer/default.nix @@ -7,16 +7,16 @@ buildGoModule rec { pname = "bearer"; - version = "1.34.0"; + version = "1.37.0"; src = fetchFromGitHub { owner = "bearer"; repo = "bearer"; rev = "refs/tags/v${version}"; - hash = "sha256-JNYjBcuA2KDdhd1yF0E7mEhNJ7xQRT+wFlnAnal/P9I="; + hash = "sha256-b4EQAAPYMoL1MP5sVr3Fu0/znWxlVzpeGbghommCpUg="; }; - vendorHash = "sha256-DykY1PFKsJ++F8ToAhyss5nAmsTOfXQXJpSo21oEhYc="; + vendorHash = "sha256-jE1DUANd1PgSWbwz/PV1pIMgzvRm0ApaJaLCljMw4ig="; subPackages = [ "cmd/bearer" diff --git a/pkgs/development/tools/buf/default.nix b/pkgs/development/tools/buf/default.nix index 5a1a1508b42e7..85ad114c93df2 100644 --- a/pkgs/development/tools/buf/default.nix +++ b/pkgs/development/tools/buf/default.nix @@ -10,20 +10,21 @@ buildGoModule rec { pname = "buf"; - version = "1.27.0"; + version = "1.29.0"; src = fetchFromGitHub { owner = "bufbuild"; repo = pname; rev = "v${version}"; - hash = "sha256-QBU04/w7Z8yaTzDqhiVcxC8xEuDpDJs7rNRpOtwodGg="; + hash = "sha256-X3/t+hMcZXR3X+XtbW2eItTgeP1NIuqrkMT4bX5VJog="; }; - vendorHash = "sha256-4JSmn/TUojZjCQMZCgJic0y84VMP26J7uBybB5/BCoE="; + vendorHash = "sha256-0wW938eU9my92dpwHEJ0Obt4XSIK5vuDa1P27nbhzao="; patches = [ - # Skip a test that requires networking to be available to work. - ./skip_test_requiring_network.patch + # Skip a test that requires networking to be available to work, + # and a test which requires the source checkout to be part of a git repository + ./skip_broken_tests.patch ]; nativeBuildInputs = [ installShellFiles ]; diff --git a/pkgs/development/tools/buf/skip_broken_tests.patch b/pkgs/development/tools/buf/skip_broken_tests.patch new file mode 100644 index 0000000000000..c25f8c8c93043 --- /dev/null +++ b/pkgs/development/tools/buf/skip_broken_tests.patch @@ -0,0 +1,28 @@ +diff --git a/private/buf/cmd/buf/workspace_unix_test.go b/private/buf/cmd/buf/workspace_unix_test.go +index 22c84385..22548555 100644 +--- a/private/buf/cmd/buf/workspace_unix_test.go ++++ b/private/buf/cmd/buf/workspace_unix_test.go +@@ -93,6 +93,8 @@ func TestWorkspaceAbsoluteFail(t *testing.T) { + // Workflow run: https://github.com/bufbuild/buf/actions/runs/6510804063/job/17685247791. + // Potential fix: https://stackoverflow.com/questions/22575662/filename-too-long-in-git-for-windows. + func TestWorkspaceGit(t *testing.T) { ++ // Fails because the source checkout is not part of a git repository while building with nix ++ t.Skip() + // Directory paths specified as a git reference within a workspace. + t.Parallel() + testRunStdout( +diff --git a/private/bufpkg/buftesting/buftesting.go b/private/bufpkg/buftesting/buftesting.go +index d9e1fdc6..6e08c439 100644 +--- a/private/bufpkg/buftesting/buftesting.go ++++ b/private/bufpkg/buftesting/buftesting.go +@@ -104,6 +104,10 @@ func RunActualProtoc( + + // GetGoogleapisDirPath gets the path to a clone of googleapis. + func GetGoogleapisDirPath(t *testing.T, buftestingDirPath string) string { ++ // Requires network access, which is not available during ++ // the nixpkgs sandboxed build ++ t.Skip() ++ + googleapisDirPath := filepath.Join(buftestingDirPath, testGoogleapisDirPath) + require.NoError( + t, diff --git a/pkgs/development/tools/buf/skip_test_requiring_network.patch b/pkgs/development/tools/buf/skip_test_requiring_network.patch deleted file mode 100644 index 1b0cdfb12c03d..0000000000000 --- a/pkgs/development/tools/buf/skip_test_requiring_network.patch +++ /dev/null @@ -1,15 +0,0 @@ -diff --git a/private/bufpkg/buftesting/buftesting.go b/private/bufpkg/buftesting/buftesting.go -index 82b3ec4..ef8263a 100644 ---- a/private/bufpkg/buftesting/buftesting.go -+++ b/private/bufpkg/buftesting/buftesting.go -@@ -99,6 +99,10 @@ func RunActualProtoc( - - // GetGoogleapisDirPath gets the path to a clone of googleapis. - func GetGoogleapisDirPath(t *testing.T, buftestingDirPath string) string { -+ // Requires network access, which is not available during -+ // the nixpkgs sandboxed build -+ t.Skip() -+ - googleapisDirPath := filepath.Join(buftestingDirPath, testGoogleapisDirPath) - require.NoError( - t, diff --git a/pkgs/development/tools/build-managers/bear/default.nix b/pkgs/development/tools/build-managers/bear/default.nix index 880184880db11..431f7b1773f62 100644 --- a/pkgs/development/tools/build-managers/bear/default.nix +++ b/pkgs/development/tools/build-managers/bear/default.nix @@ -2,6 +2,7 @@ , fetchFromGitHub , fetchpatch , cmake +, ninja , pkg-config , grpc , protobuf @@ -13,6 +14,9 @@ , zlib , sqlite , re2 +, lit +, python3 +, coreutils }: stdenv.mkDerivation rec { @@ -26,7 +30,15 @@ stdenv.mkDerivation rec { hash = "sha256-1nZPzgLWcmaRkOUXdm16IW2Nw/p1w8GBGEfZX/v+En0="; }; - nativeBuildInputs = [ cmake pkg-config ]; + nativeBuildInputs = [ + cmake + ninja + pkg-config + + # Used for functional tests, which run during buildPhase. + lit + python3 + ]; buildInputs = [ grpc @@ -41,13 +53,32 @@ stdenv.mkDerivation rec { re2 ]; + cmakeFlags = [ + # Build system and generated files concatenate install prefix and + # CMAKE_INSTALL_{BIN,LIB}DIR, which breaks if these are absolute paths. + "-DCMAKE_INSTALL_BINDIR=bin" + "-DCMAKE_INSTALL_LIBDIR=lib" + (lib.cmakeBool "ENABLE_UNIT_TESTS" false) + (lib.cmakeBool "ENABLE_FUNC_TESTS" false) + ]; + patches = [ - # Default libexec would be set to /nix/store/*-bear//nix/store/*-bear/libexec/... - ./no-double-relative.patch + # Fix toolchain environment variable handling and the Darwin SIP check. + ./fix-functional-tests.patch ]; + postPatch = '' + patchShebangs test/bin + + # /usr/bin/env is used in test commands and embedded scripts. + find test -name '*.sh' \ + -exec sed -ie 's|/usr/bin/env|${coreutils}/bin/env|g' {} + + ''; + + # Functional tests use loopback networking. + __darwinAllowLocalNetworking = true; + meta = with lib; { - broken = stdenv.isDarwin; description = "Tool that generates a compilation database for clang tooling"; longDescription = '' Note: the bear command is very useful to generate compilation commands @@ -57,6 +88,6 @@ stdenv.mkDerivation rec { homepage = "https://github.com/rizsotto/Bear"; license = licenses.gpl3Plus; platforms = platforms.unix; - maintainers = with maintainers; [ babariviere qyliss ]; + maintainers = with maintainers; [ babariviere ]; }; } diff --git a/pkgs/development/tools/build-managers/bear/fix-functional-tests.patch b/pkgs/development/tools/build-managers/bear/fix-functional-tests.patch new file mode 100644 index 0000000000000..99d64f26d077e --- /dev/null +++ b/pkgs/development/tools/build-managers/bear/fix-functional-tests.patch @@ -0,0 +1,32 @@ +diff --git a/test/lit.cfg b/test/lit.cfg +index 118c979..b69fecc 100644 +--- a/test/lit.cfg ++++ b/test/lit.cfg +@@ -207,13 +207,8 @@ def is_preload_disabled(): + if is_windows: + return True + elif sys.platform == 'darwin': +- command = ['csrutil', 'status'] +- pattern = re.compile(r'System Integrity Protection status:\s+enabled') +- try: +- output = subprocess.check_output(command, stderr=subprocess.STDOUT) +- return any(pattern.match(line) for line in output.decode('utf-8').splitlines()) +- except (OSError, subprocess.CalledProcessError): +- return False ++ # csrutil(8) isn't available in the Nix build sandbox. ++ return True + else: + return False + +@@ -221,6 +216,11 @@ def is_preload_disabled(): + if not is_preload_disabled(): + config.available_features.add('preload') + ++# Preserve the variables required for the Nix toolchain wrappers. ++for var, value in os.environ.items(): ++ if var.startswith('NIX_'): ++ config.environment[var] = value ++ + print(config.substitutions) + print(config.environment) + print(config.available_features) diff --git a/pkgs/development/tools/build-managers/bear/no-double-relative.patch b/pkgs/development/tools/build-managers/bear/no-double-relative.patch deleted file mode 100644 index e8087feb1afb2..0000000000000 --- a/pkgs/development/tools/build-managers/bear/no-double-relative.patch +++ /dev/null @@ -1,27 +0,0 @@ -diff --git a/source/config.h.in b/source/config.h.in -index 6b659c2..f7bdf22 100644 ---- a/source/config.h.in -+++ b/source/config.h.in -@@ -108,8 +108,8 @@ namespace cmd { - } - - namespace wrapper { -- constexpr char DEFAULT_PATH[] = "@ROOT_INSTALL_PREFIX@/@CMAKE_INSTALL_LIBDIR@/bear/wrapper"; -- constexpr char DEFAULT_DIR_PATH[] = "@ROOT_INSTALL_PREFIX@/@CMAKE_INSTALL_LIBDIR@/bear/wrapper.d"; -+ constexpr char DEFAULT_PATH[] = "@CMAKE_INSTALL_LIBDIR@/bear/wrapper"; -+ constexpr char DEFAULT_DIR_PATH[] = "@CMAKE_INSTALL_LIBDIR@/bear/wrapper.d"; - - constexpr char FLAG_VERBOSE[] = "--verbose"; - constexpr char FLAG_DESTINATION[] = "--destination"; -@@ -134,9 +134,9 @@ namespace cmd { - // And use the `libexec.so` path default value with a single path, - // that matches both. (The match can be achieved by the $LIB token - // expansion from the dynamic loader. See `man ld.so` for more.) -- constexpr char DEFAULT_PATH[] = "@ROOT_INSTALL_PREFIX@/$LIB/bear/@CMAKE_SHARED_LIBRARY_PREFIX@exec@CMAKE_SHARED_LIBRARY_SUFFIX@"; -+ constexpr char DEFAULT_PATH[] = "$LIB/bear/@CMAKE_SHARED_LIBRARY_PREFIX@exec@CMAKE_SHARED_LIBRARY_SUFFIX@"; - #else -- constexpr char DEFAULT_PATH[] = "@ROOT_INSTALL_PREFIX@/@CMAKE_INSTALL_LIBDIR@/bear/@CMAKE_SHARED_LIBRARY_PREFIX@exec@CMAKE_SHARED_LIBRARY_SUFFIX@"; -+ constexpr char DEFAULT_PATH[] = "@CMAKE_INSTALL_LIBDIR@/bear/@CMAKE_SHARED_LIBRARY_PREFIX@exec@CMAKE_SHARED_LIBRARY_SUFFIX@"; - #endif - constexpr char KEY_REPORTER[] = "INTERCEPT_REPORT_COMMAND"; - constexpr char KEY_DESTINATION[] = "INTERCEPT_REPORT_DESTINATION"; diff --git a/pkgs/development/tools/build-managers/buck2/default.nix b/pkgs/development/tools/build-managers/buck2/default.nix index 5ae28b1512c22..20b1d184e8e1e 100644 --- a/pkgs/development/tools/build-managers/buck2/default.nix +++ b/pkgs/development/tools/build-managers/buck2/default.nix @@ -38,7 +38,7 @@ let buildHashes = builtins.fromJSON (builtins.readFile ./hashes.json); # our version of buck2; this should be a git tag - version = "2023-10-15"; + version = "2024-01-15"; # the platform-specific, statically linked binary — which is also # zstd-compressed @@ -63,7 +63,7 @@ let # tooling prelude-src = let - prelude-hash = "880be565178cf1e08ce9badef52b215f91e48479"; + prelude-hash = "ccf6f5d1693cfa215b60212cf9863d27c6fd6a69"; name = "buck2-prelude-${version}.tar.gz"; hash = buildHashes."_prelude"; url = "https://github.com/facebook/buck2-prelude/archive/${prelude-hash}.tar.gz"; diff --git a/pkgs/development/tools/build-managers/buck2/hashes.json b/pkgs/development/tools/build-managers/buck2/hashes.json index b444cfeeae04c..687a2f585f026 100644 --- a/pkgs/development/tools/build-managers/buck2/hashes.json +++ b/pkgs/development/tools/build-managers/buck2/hashes.json @@ -1,7 +1,7 @@ { "_comment": "@generated by pkgs/development/tools/build-managers/buck2/update.sh" -, "_prelude": "sha256-mm9jU74rsLpiMzuDmSih6tzY4+NOiR15j+W96BVe/OI=" -, "x86_64-linux": "sha256-qxymUjsSwCf6ev5TwlkWVGtMc9tj6Vt4yMIPaLHFAMM=" -, "x86_64-darwin": "sha256-DGfpByvL4gmP+CR7VLCZS8IGSJ3esHhuKxHUfXJb/6k=" -, "aarch64-linux": "sha256-zc9LEYmpVJttCTI6Qxm25KZRX8CJVJzVtSbouw0LB6g=" -, "aarch64-darwin": "sha256-HUzpKJQN/22IQYmHLhW0fVQs0f86rREMTlp+yOfK0+Y=" +, "_prelude": "sha256-Bsd545xKass+Sua1sTFRNJgOokaHS62AKvhiLuqL58w=" +, "x86_64-linux": "sha256-Oxgz96x9INVDybJIRlBvIa76V7ngUxYh9Uo6Hdo/3pQ=" +, "x86_64-darwin": "sha256-tOlp6LKdQZg6TK2Ki8yf/e38Ibrx3fDrzOzC6bzGtrQ=" +, "aarch64-linux": "sha256-LmMbh/4tckZN1J8GJzMt8GyPmQbk3zc9DwXqJ004O7c=" +, "aarch64-darwin": "sha256-qsdHCxtJzu+UMVl1AcQh3cgDWQAITQNJEnfEN9A1W5M=" } diff --git a/pkgs/development/tools/build-managers/conan/default.nix b/pkgs/development/tools/build-managers/conan/default.nix index eb0c4c9e76c28..7226d4e3340ac 100644 --- a/pkgs/development/tools/build-managers/conan/default.nix +++ b/pkgs/development/tools/build-managers/conan/default.nix @@ -10,14 +10,14 @@ python3.pkgs.buildPythonApplication rec { pname = "conan"; - version = "2.0.14"; + version = "2.0.17"; format = "setuptools"; src = fetchFromGitHub { owner = "conan-io"; repo = "conan"; rev = "refs/tags/${version}"; - hash = "sha256-zPN6OlEWYc/OvUb7LHF1/mZYrieG8n2bLcZ/IzwlvtE="; + hash = "sha256-liCeGe0WBW+tOjW81cqrFUiOEWYhlqsBVgns6SxjPNM="; }; nativeBuildInputs = with python3.pkgs; [ diff --git a/pkgs/development/tools/build-managers/corrosion/default.nix b/pkgs/development/tools/build-managers/corrosion/default.nix index 505f22c225bc1..22222a8f88cf1 100644 --- a/pkgs/development/tools/build-managers/corrosion/default.nix +++ b/pkgs/development/tools/build-managers/corrosion/default.nix @@ -10,13 +10,13 @@ stdenv.mkDerivation rec { pname = "corrosion"; - version = "0.4.5"; + version = "0.4.7"; src = fetchFromGitHub { owner = "corrosion-rs"; repo = "corrosion"; rev = "v${version}"; - hash = "sha256-eE3RNLK5xKOjXeA+vDQmM1hvw92TbmPEDLdeqimgwcA="; + hash = "sha256-6jjcBBc1gtMG2sYppOIRa/tYjmUgW4kFxAuoGj7Tpgw="; }; cargoRoot = "generator"; @@ -25,7 +25,7 @@ stdenv.mkDerivation rec { inherit src; sourceRoot = "${src.name}/${cargoRoot}"; name = "${pname}-${version}"; - hash = "sha256-j9tsRho/gWCGwXUYZSbs3rudT6nYHh0FSfBCAemZHmw="; + hash = "sha256-M5Wnx+SfVvdhC5bHVZa0Di2up3Qt5z1jog8yxIKvG/Y="; }; buildInputs = lib.optional stdenv.isDarwin libiconv; diff --git a/pkgs/development/tools/build-managers/gradle/default.nix b/pkgs/development/tools/build-managers/gradle/default.nix index 1e1b50f142ece..7252511af92d2 100644 --- a/pkgs/development/tools/build-managers/gradle/default.nix +++ b/pkgs/development/tools/build-managers/gradle/default.nix @@ -128,9 +128,9 @@ rec { # https://docs.gradle.org/current/userguide/compatibility.html gradle_8 = gen { - version = "8.5"; + version = "8.6"; nativeVersion = "0.22-milestone-25"; - hash = "sha256-nZJnhwZqCBc56CAIWDOLSmnoN8OoIaM6yp2wndSkECY="; + hash = "sha256-ljHVPPPnS/pyaJOu4fiZT+5OBgxAEzWUbbohVvRA8kw="; defaultJava = jdk21; }; diff --git a/pkgs/development/tools/build-managers/gup/default.nix b/pkgs/development/tools/build-managers/gup/default.nix index c051b34dea359..202fdf4d296fe 100644 --- a/pkgs/development/tools/build-managers/gup/default.nix +++ b/pkgs/development/tools/build-managers/gup/default.nix @@ -1,18 +1,17 @@ { stdenv, fetchFromGitHub, nix-update-source, lib, python3 -, which, runtimeShell, pychecker ? null }: +, which, runtimeShell, pylint }: stdenv.mkDerivation rec { - version = "0.8.4"; + version = "0.9.0"; src = fetchFromGitHub { owner = "timbertson"; repo = "gup"; rev = "version-${version}"; - sha256 = "0b8q9mrr7b9silwc4mp733j1z18g4lp6ppdi8p2rxzgb2fb4bkvp"; + sha256 = "12ck047jminfwb4cfzmvfc9dpxg25xian11jgly534rlcbmgmkgq"; }; pname = "gup"; - nativeBuildInputs = [ python3 which pychecker ]; + nativeBuildInputs = [ python3 which pylint ]; buildInputs = [ python3 ]; strictDeps = true; - SKIP_PYCHECKER = pychecker == null; buildPhase = "make python"; installPhase = '' mkdir $out diff --git a/pkgs/development/tools/build-managers/moon/default.nix b/pkgs/development/tools/build-managers/moon/default.nix index 30f3c14c9d40a..b8dc4d27b2b9d 100644 --- a/pkgs/development/tools/build-managers/moon/default.nix +++ b/pkgs/development/tools/build-managers/moon/default.nix @@ -9,16 +9,16 @@ rustPlatform.buildRustPackage rec { pname = "moon"; - version = "1.19.0"; + version = "1.20.1"; src = fetchFromGitHub { owner = "moonrepo"; repo = pname; rev = "v${version}"; - hash = "sha256-BjSe5N9rFsVL5EueCbBTcnIJM4TYd5q/1wrsANCyniU="; + hash = "sha256-wAY5jifyjK5jp5nlrwt/Krp96in06SnayTKx8inrf0A="; }; - cargoHash = "sha256-tMqk0aI+ObxlgAOa1inL8mba9ti9Gxhg9mckmyNsuv8="; + cargoHash = "sha256-qfDw+zmhk0M3gItiB7qfgiQCBRvOYBOirJFMyNRr714="; env = { RUSTFLAGS = "-C strip=symbols"; diff --git a/pkgs/development/tools/build-managers/rake/Gemfile.lock b/pkgs/development/tools/build-managers/rake/Gemfile.lock index a8c82c508bd90..5082e8b0c44c9 100644 --- a/pkgs/development/tools/build-managers/rake/Gemfile.lock +++ b/pkgs/development/tools/build-managers/rake/Gemfile.lock @@ -1,7 +1,7 @@ GEM remote: https://rubygems.org/ specs: - rake (13.0.6) + rake (13.1.0) PLATFORMS ruby @@ -10,4 +10,4 @@ DEPENDENCIES rake BUNDLED WITH - 2.4.6 + 2.5.3 diff --git a/pkgs/development/tools/build-managers/rake/gemset.nix b/pkgs/development/tools/build-managers/rake/gemset.nix index b389469840d0e..e384c801699cf 100644 --- a/pkgs/development/tools/build-managers/rake/gemset.nix +++ b/pkgs/development/tools/build-managers/rake/gemset.nix @@ -4,9 +4,9 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "15whn7p9nrkxangbs9hh75q585yfn66lv0v2mhj6q6dl6x8bzr2w"; + sha256 = "1ilr853hawi09626axx0mps4rkkmxcs54mapz9jnqvpnlwd3wsmy"; type = "gem"; }; - version = "13.0.6"; + version = "13.1.0"; }; } diff --git a/pkgs/development/tools/build-managers/sbt/default.nix b/pkgs/development/tools/build-managers/sbt/default.nix index 7e70d0c04afa6..e554268e102a2 100644 --- a/pkgs/development/tools/build-managers/sbt/default.nix +++ b/pkgs/development/tools/build-managers/sbt/default.nix @@ -32,7 +32,9 @@ stdenv.mkDerivation (finalAttrs: { mkdir -p $out/share/sbt $out/bin cp -ra . $out/share/sbt ln -sT ../share/sbt/bin/sbt $out/bin/sbt - ln -sT ../share/sbt/bin/sbtn-x86_64-${ + ln -sT ../share/sbt/bin/sbtn-${ + if (stdenv.hostPlatform.isAarch64) then "aarch64" else "x86_64" + }-${ if (stdenv.isDarwin) then "apple-darwin" else "pc-linux" } $out/bin/sbtn diff --git a/pkgs/development/tools/buildah/default.nix b/pkgs/development/tools/buildah/default.nix index 81d00d6304e06..f67dba03c3655 100644 --- a/pkgs/development/tools/buildah/default.nix +++ b/pkgs/development/tools/buildah/default.nix @@ -17,13 +17,13 @@ buildGoModule rec { pname = "buildah"; - version = "1.33.2"; + version = "1.34.0"; src = fetchFromGitHub { owner = "containers"; repo = "buildah"; rev = "v${version}"; - hash = "sha256-jkUEGaECBNidKreoyezWw7LN38uHqyYo40dOwfuuuI4="; + hash = "sha256-LX7yc2FnCiquHV/tESJV/VkuUYXbRNSxmMzVpSz/F8w="; }; outputs = [ "out" "man" ]; diff --git a/pkgs/development/tools/buildkit/default.nix b/pkgs/development/tools/buildkit/default.nix index 8898ff89f3716..19f418b543a1b 100644 --- a/pkgs/development/tools/buildkit/default.nix +++ b/pkgs/development/tools/buildkit/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "buildkit"; - version = "0.12.4"; + version = "0.12.5"; src = fetchFromGitHub { owner = "moby"; repo = "buildkit"; rev = "v${version}"; - hash = "sha256-nQvrd2W9xWWGTlwN5Q2E3rs67OUxZ4bIp+rK2W2PUww="; + hash = "sha256-LESaOrUxV/BHGW9JSZfTXpbedp1aegPFWu9/tRx2ArM="; }; vendorHash = null; diff --git a/pkgs/development/tools/buildpack/default.nix b/pkgs/development/tools/buildpack/default.nix index 2d39fd93559d2..57d10c8f1865a 100644 --- a/pkgs/development/tools/buildpack/default.nix +++ b/pkgs/development/tools/buildpack/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "pack"; - version = "0.32.1"; + version = "0.33.0"; src = fetchFromGitHub { owner = "buildpacks"; repo = pname; rev = "v${version}"; - hash = "sha256-U3dSGTn9dV0Iiu0DtLCWF/BFHYhRGxirA5T067riA0w="; + hash = "sha256-c/8pKuFO4lii/Z32mYbTHiEedxDzB3wb6lQGOrLQfYM="; }; - vendorHash = "sha256-42CrWLwBcv2GE+hEgJJOd7hFQu7rjYrXkPhhUykqIQw="; + vendorHash = "sha256-UCNpKBsdwWmllgIi/3Dr6lWJLOh6okYwOHmRfRW0iAQ="; nativeBuildInputs = [ installShellFiles ]; diff --git a/pkgs/development/tools/capnproto-java/default.nix b/pkgs/development/tools/capnproto-java/default.nix index cbda8c2cc97e8..b96aa44a779cd 100644 --- a/pkgs/development/tools/capnproto-java/default.nix +++ b/pkgs/development/tools/capnproto-java/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "capnproto-java"; - version = "0.1.15"; + version = "0.1.16"; src = fetchFromGitHub { owner = "capnproto"; repo = pname; rev = "v${version}"; - hash = "sha256:IcmzI1G0mXOlpzmiyeLD7o1p/eOeVpwkiGsgy5OIjxw="; + hash = "sha256-7uYtRHKsJvbE1b0HbNXGbRXpkUHHLjMDIWLlOUcQWDk="; }; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/development/tools/castxml/default.nix b/pkgs/development/tools/castxml/default.nix index 9bfe91677a2eb..1a7c15d9a963f 100644 --- a/pkgs/development/tools/castxml/default.nix +++ b/pkgs/development/tools/castxml/default.nix @@ -17,13 +17,13 @@ let in stdenv.mkDerivation (finalAttrs: { pname = "castxml"; - version = "0.6.2"; + version = "0.6.4"; src = fetchFromGitHub { owner = "CastXML"; repo = "CastXML"; rev = "v${finalAttrs.version}"; - hash = "sha256-x27koa0q+rDqPmfHMf7v7KTx3bfDgqS/FkPAX5auqaw="; + hash = "sha256-6xeMkqsFchZxrAsE2DLaIzGU4VMwyDckm00s69wahOo="; }; nativeBuildInputs = [ diff --git a/pkgs/development/tools/cddl/Gemfile.lock b/pkgs/development/tools/cddl/Gemfile.lock index 796a7743cac5e..24afe0d41838f 100644 --- a/pkgs/development/tools/cddl/Gemfile.lock +++ b/pkgs/development/tools/cddl/Gemfile.lock @@ -1,23 +1,33 @@ GEM remote: https://rubygems.org/ specs: - abnc (0.1.0) - cbor-diag (0.5.6) - json + abnc (0.1.1) + abnftt (0.2.4) + base32 (0.3.4) + cbor-canonical (0.1.2) + cbor-deterministic (0.1.3) + cbor-diag (0.8.7) + cbor-canonical + cbor-deterministic + cbor-packed + json_pure neatjson treetop (~> 1) - cddl (0.8.9) + cbor-packed (0.1.5) + cddl (0.10.3) abnc + abnftt + base32 (~> 0.3) cbor-diag colorize - json + json_pure regexp-examples - colorize (0.8.1) - json (2.2.0) - neatjson (0.9) + colorize (1.1.0) + json_pure (2.7.1) + neatjson (0.10.5) polyglot (0.3.5) - regexp-examples (1.5.0) - treetop (1.6.10) + regexp-examples (1.5.1) + treetop (1.6.12) polyglot (~> 0.3) PLATFORMS @@ -27,4 +37,4 @@ DEPENDENCIES cddl BUNDLED WITH - 2.1.4 + 2.3.25 diff --git a/pkgs/development/tools/cddl/default.nix b/pkgs/development/tools/cddl/default.nix index 8fdae4b1c441b..f99e547435ce9 100644 --- a/pkgs/development/tools/cddl/default.nix +++ b/pkgs/development/tools/cddl/default.nix @@ -1,18 +1,41 @@ -{ lib, bundlerApp, bundlerUpdateScript }: +{ lib +, bundlerApp +, bundlerUpdateScript +, makeBinaryWrapper +}: -bundlerApp { +bundlerApp rec { pname = "cddl"; - gemdir = ./.; + gemfile = ./Gemfile; + lockfile = ./Gemfile.lock; + + gemset = lib.recursiveUpdate (import ./gemset.nix) ({ + "cddl" = { + dontBuild = false; + # setting env vars is not supported by patchShebangs + postPatch = '' + sed -i 's\#!/usr/bin/env RUBY_THREAD_VM_STACK_SIZE=5000000\#!/usr/bin/env\' bin/cddl + ''; + }; + }); + exes = [ "cddl" ]; + nativeBuildInputs = [ makeBinaryWrapper ]; + + postBuild = '' + wrapProgram $out/bin/cddl \ + --set RUBY_THREAD_VM_STACK_SIZE 5000000 + ''; + passthru.updateScript = bundlerUpdateScript "cddl"; meta = with lib; { description = "A parser, generator, and validator for CDDL"; homepage = "https://rubygems.org/gems/cddl"; license = with licenses; mit; - maintainers = with maintainers; [ fdns nicknovitski ]; + maintainers = with maintainers; [ fdns nicknovitski amesgen ]; platforms = platforms.unix; }; } diff --git a/pkgs/development/tools/cddl/gemset.nix b/pkgs/development/tools/cddl/gemset.nix index c1f1c64495e32..1f19c3920bdf1 100644 --- a/pkgs/development/tools/cddl/gemset.nix +++ b/pkgs/development/tools/cddl/gemset.nix @@ -4,62 +4,112 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "13nvzrk72nj130fs8bq8q3cfm48939rdzh7l31ncj5c4969hrbig"; + sha256 = "0yj09gc9w208wsy0d45vzha4zfwxdpsqvkm9vms0chm4lxdwdg9x"; type = "gem"; }; - version = "0.1.0"; + version = "0.1.1"; + }; + abnftt = { + groups = ["default"]; + platforms = []; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "1z7ibh0xv9mqk61rvvmz9fnfk6hffvnppqd8fx61vazjhisi9bcs"; + type = "gem"; + }; + version = "0.2.4"; + }; + base32 = { + groups = ["default"]; + platforms = []; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "1fjs0l3c5g9qxwp43kcnhc45slx29yjb6m6jxbb2x1krgjmi166b"; + type = "gem"; + }; + version = "0.3.4"; + }; + cbor-canonical = { + groups = ["default"]; + platforms = []; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "1fhj51s5d9b9spw096sb0p92bgilw9hrsay383563dh913j2jn11"; + type = "gem"; + }; + version = "0.1.2"; + }; + cbor-deterministic = { + groups = ["default"]; + platforms = []; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "1w1mg4mn1dhlxlbijxpzja8m8ggrjs0hzkzvnaazw9zm1ji6dpba"; + type = "gem"; + }; + version = "0.1.3"; }; cbor-diag = { - dependencies = ["json" "neatjson" "treetop"]; + dependencies = ["cbor-canonical" "cbor-deterministic" "cbor-packed" "json_pure" "neatjson" "treetop"]; + groups = ["default"]; + platforms = []; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "0rwd88xngbjamgydj9rg3wvgl53pfzhal2n702s9afa1yp8mjm51"; + type = "gem"; + }; + version = "0.8.7"; + }; + cbor-packed = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0pd0k4malg1l7w3ck5glh9w0hrsvknk8rp32vrir74yww1g6yplv"; + sha256 = "1dijyj7rivi39h34f32fx7k4xvngldf569i0372n1z6w01nv761l"; type = "gem"; }; - version = "0.5.6"; + version = "0.1.5"; }; cddl = { - dependencies = ["abnc" "cbor-diag" "colorize" "json" "regexp-examples"]; + dependencies = ["abnc" "abnftt" "base32" "cbor-diag" "colorize" "json_pure" "regexp-examples"]; groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "16rmcrsxwx33pj25g1si0dhjdl2brfhy2vlpfwdb6qqkaikmzhpz"; + sha256 = "1qll1qvn3g75r742kr4da7240zdk2qj4vh325965rrjqp8brz23q"; type = "gem"; }; - version = "0.8.9"; + version = "0.10.3"; }; colorize = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "133rqj85n400qk6g3dhf2bmfws34mak1wqihvh3bgy9jhajw580b"; + sha256 = "0dy8ryhcdzgmbvj7jpa1qq3bhhk1m7a2pz6ip0m6dxh30rzj7d9h"; type = "gem"; }; - version = "0.8.1"; + version = "1.1.0"; }; - json = { + json_pure = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0sx97bm9by389rbzv8r1f43h06xcz8vwi3h5jv074gvparql7lcx"; + sha256 = "09w7f7xlcas9irlaavhz0rnh17cjvjmmqm07drgghx5gwjcrar31"; type = "gem"; }; - version = "2.2.0"; + version = "2.7.1"; }; neatjson = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0fa2v7b6433j0iqh5iq9r71v7a5xabgjvqwsbl21vcsac7vf3ncw"; + sha256 = "0wm1lq8yl6rzysh3wg6fa55w5534k6ppiz0qb7jyvdy582mk5i0s"; type = "gem"; }; - version = "0.9"; + version = "0.10.5"; }; polyglot = { groups = ["default"]; @@ -76,10 +126,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "08s5d327i9dw5yjwv9vfss3qb7lwasjyc75wvh7vrdi5v4vm1y2k"; + sha256 = "0wfkwczjn62qq3z96dxk43m0gh6d5cajx9pxkanvk88d3yqnx29v"; type = "gem"; }; - version = "1.5.0"; + version = "1.5.1"; }; treetop = { dependencies = ["polyglot"]; @@ -87,9 +137,9 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0g31pijhnv7z960sd09lckmw9h8rs3wmc8g4ihmppszxqm99zpv7"; + sha256 = "0adc8qblz8ii668r3rksjx83p675iryh52rvdvysimx2hkbasj7d"; type = "gem"; }; - version = "1.6.10"; + version = "1.6.12"; }; } diff --git a/pkgs/development/tools/changie/default.nix b/pkgs/development/tools/changie/default.nix index 7b155d4c40bad..bd52641f2be5d 100644 --- a/pkgs/development/tools/changie/default.nix +++ b/pkgs/development/tools/changie/default.nix @@ -6,16 +6,16 @@ buildGoModule rec { pname = "changie"; - version = "1.17.0"; + version = "1.18.0"; src = fetchFromGitHub { owner = "miniscruff"; repo = "changie"; rev = "v${version}"; - hash = "sha256-IS4KKvAi4VutJADSpst56ZdeqoqVkSMQ1TyQR12pqNg="; + hash = "sha256-pZe9T/WALFX5xwCiZKbf8fpaG3wmBJbqgM7FTPqlN2k="; }; - vendorHash = "sha256-JmK7bcS8UYCOUvJGs0PAYPNc8iwvCSFzjLlkBEVUa40="; + vendorHash = "sha256-SdaDu9LXgelSEXdOCAbtvt1LnrSVpAIoN6MDSjTeEOs="; nativeBuildInputs = [ installShellFiles diff --git a/pkgs/development/tools/check-jsonschema/default.nix b/pkgs/development/tools/check-jsonschema/default.nix index 3731e3e7e5f35..3591e5a2515f7 100644 --- a/pkgs/development/tools/check-jsonschema/default.nix +++ b/pkgs/development/tools/check-jsonschema/default.nix @@ -4,7 +4,7 @@ with python3.pkgs; buildPythonApplication rec { pname = "check-jsonschema"; - version = "0.27.3"; + version = "0.27.4"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -12,8 +12,8 @@ buildPythonApplication rec { src = fetchFromGitHub { owner = "python-jsonschema"; repo = "check-jsonschema"; - rev = version; - hash = "sha256-WXvhlkU1dRNKhW3sMakd644W56xv8keMjSZL4MrQEc8="; + rev = "refs/tags/${version}"; + hash = "sha256-xOLS2AQlVrL9b7VVCbnDyjHhQYmcD2DvPmEs+nn7Gm4="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/tools/cloudsmith-cli/default.nix b/pkgs/development/tools/cloudsmith-cli/default.nix index ee3cd5ac33a3f..48952c0616fbe 100644 --- a/pkgs/development/tools/cloudsmith-cli/default.nix +++ b/pkgs/development/tools/cloudsmith-cli/default.nix @@ -5,13 +5,13 @@ python3.pkgs.buildPythonApplication rec { pname = "cloudsmith-cli"; - version = "0.35.2"; + version = "1.1.1"; format = "wheel"; src = fetchPypi { pname = "cloudsmith_cli"; inherit format version; - hash = "sha256-+M4CPveS9dltMI291Atm84T/cf4dPOO3wPvPI15E73Y="; + hash = "sha256-evwXXGmGa6V2LhgkmX04E5VvdPxeZzvl4F28auXcSng="; }; propagatedBuildInputs = with python3.pkgs; [ diff --git a/pkgs/development/tools/container2wasm/default.nix b/pkgs/development/tools/container2wasm/default.nix index 8c065ad40d621..36fffe0117daf 100644 --- a/pkgs/development/tools/container2wasm/default.nix +++ b/pkgs/development/tools/container2wasm/default.nix @@ -5,16 +5,16 @@ buildGoModule rec { pname = "container2wasm"; - version = "0.5.3"; + version = "0.6.2"; src = fetchFromGitHub { owner = "ktock"; repo = "container2wasm"; rev = "refs/tags/v${version}"; - hash = "sha256-ttRl7buVi0bei3zqq1smzLOEdsgtaFdS/S9VIcMgF8w="; + hash = "sha256-Vsy3K9gLWgfKK7aszpSX4JbiNSL6ao9vbQUgIxkVr2M="; }; - vendorHash = "sha256-m2KBO14vwSgYkw2aE2AIbkk91dzb83B9n3QSx4YGiME="; + vendorHash = "sha256-xVHBL0bWXisXoRdGb4638+m9mxZZivkoo1U5rr6jG/0="; ldflags = [ "-s" diff --git a/pkgs/development/tools/continuous-integration/buildbot/master.nix b/pkgs/development/tools/continuous-integration/buildbot/master.nix index d57e11fb07abc..d2554713109c3 100644 --- a/pkgs/development/tools/continuous-integration/buildbot/master.nix +++ b/pkgs/development/tools/continuous-integration/buildbot/master.nix @@ -70,14 +70,14 @@ let package = buildPythonApplication rec { pname = "buildbot"; - version = "3.10.1"; + version = "3.11.0"; format = "pyproject"; disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; - hash = "sha256-/J4jWoIZEObSZKw04Ib6h4AvJtfNwzwozRu+gFek1Dk="; + hash = "sha256-0TW14K0Cp3Ylk+JDNV9x7a8Ul7EC5FTTVvSGccXv6JU="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/tools/continuous-integration/buildbot/pkg.nix b/pkgs/development/tools/continuous-integration/buildbot/pkg.nix index 88b03f46a3621..80c4170664280 100644 --- a/pkgs/development/tools/continuous-integration/buildbot/pkg.nix +++ b/pkgs/development/tools/continuous-integration/buildbot/pkg.nix @@ -6,7 +6,7 @@ buildPythonPackage rec { src = fetchPypi { inherit pname version; - hash = "sha256-6lJW1XNwKXeTTn0jDOIsVHUrmxSWc4iK3gINvTFX2XU="; + hash = "sha256-ImXiBIFSj0of2SFX01sXB5BI4TYA2IAGmfPofC8ERZQ="; }; postPatch = '' diff --git a/pkgs/development/tools/continuous-integration/buildbot/plugins.nix b/pkgs/development/tools/continuous-integration/buildbot/plugins.nix index 5e9f056f37087..4d2253c54d612 100644 --- a/pkgs/development/tools/continuous-integration/buildbot/plugins.nix +++ b/pkgs/development/tools/continuous-integration/buildbot/plugins.nix @@ -8,7 +8,7 @@ src = fetchPypi { inherit pname version; - hash = "sha256-W0NRRS0z02/31eyqVRGJUZlUaI77I9WuAI3d3FlWHOQ="; + hash = "sha256-bu22WXJ2yBGe89GL3RBxkUN/yPu2GEYURk6C+2LIpns="; }; # Remove unnecessary circular dependency on buildbot @@ -35,7 +35,7 @@ src = fetchPypi { inherit pname version; - hash = "sha256-NfpgTZ0+sP2U8rkf+C4WTpXKVBvO8T+ijs8xIPe49tA="; + hash = "sha256-WDtw4wSAPsmIRcoZS1PIRzQR4OJnHVyc19Q7MnU5VSs="; }; # Remove unnecessary circular dependency on buildbot @@ -62,7 +62,7 @@ src = fetchPypi { inherit pname version; - hash = "sha256-ykzzvsxP8e0TIHnZJPSnFJoZNNZDvbZ7vZ6hCZyd0iA="; + hash = "sha256-HGlKu9ptej35GJYBBWted/YtsH/uigckAoFAjYTh3gY="; }; buildInputs = [ buildbot-pkg ]; @@ -84,7 +84,7 @@ src = fetchPypi { inherit pname version; - hash = "sha256-U0j/ovoP3A83BzQWF4dtwisJxs00mZz0yyT12mlxfGo="; + hash = "sha256-oFbR4NvI/6oPXY8TospkHS1j/5KzXd1fguazFtDPIko="; }; buildInputs = [ buildbot-pkg ]; @@ -106,7 +106,7 @@ src = fetchPypi { inherit pname version; - hash = "sha256-cu0+66DHf8Hfvfx/IvVyexwl3I0MmLjJrNDBPLxo7Bg="; + hash = "sha256-O4scYAKpoEOXsPIodkKUrfwCGNYHlOGfvDnguaM12U0="; }; buildInputs = [ buildbot-pkg ]; @@ -128,7 +128,7 @@ src = fetchPypi { inherit pname version; - hash = "sha256-vt7ea0IWIKn4i8sBUUMsoOMi1gPzzFssQ6wORDClJqs="; + hash = "sha256-DlYqK32lVdZ8qby/1+JCo6m81/0dsxqiAfWMIZ1OAPQ="; }; buildInputs = [ buildbot-pkg ]; @@ -150,7 +150,7 @@ src = fetchPypi { inherit pname version; - hash = "sha256-Fd8r2+jV4YSuYu6zUl0fDjEdUGkzuHckR+PTSEyoXio="; + hash = "sha256-cK+uZU7rG423IT8xvwrpMPiUXfu1oPpGB5onmWNK4fs="; }; buildInputs = [ buildbot-pkg ]; @@ -172,7 +172,7 @@ src = fetchPypi { inherit pname version; - hash = "sha256-Q8gwqUfMy+D9dPBSw60BhNV12iu9mjhc7KXKYjtO23s="; + hash = "sha256-Gbc0T1fsmke1pO/LiXCzQYrjWzYG1WhHZgypLyzhfok="; }; buildInputs = [ buildbot-pkg ]; @@ -194,7 +194,7 @@ src = fetchPypi { inherit pname version; - hash = "sha256-LzsdHTABtHJzEfkyJ6LbmLE0QmKA3DVjY8VP90O3jT4="; + hash = "sha256-eFfOYhKw575VWlwD5dKRnqjSUV6kdPrv3UXBs/3AREo="; }; buildInputs = [ buildbot-pkg ]; @@ -210,13 +210,35 @@ }; }; + react-wsgi-dashboards = buildPythonPackage rec { + pname = "buildbot-react-wsgi-dashboards"; + inherit (buildbot-pkg) version; + + src = fetchPypi { + inherit pname version; + hash = "sha256-0CCD1Zrj1xodUITvLzTDrLgLGaEVqt8y26f+exsP4N8="; + }; + + buildInputs = [ buildbot-pkg ]; + + # tests fail + doCheck = false; + + meta = with lib; { + homepage = "https://buildbot.net/"; + description = "Buildbot WSGI dashboards Plugin (React)"; + maintainers = teams.buildbot.members; + license = licenses.gpl2; + }; + }; + badges = buildPythonPackage rec { pname = "buildbot-badges"; inherit (buildbot-pkg) version; src = fetchPypi { inherit pname version; - hash = "sha256-tVMXGYTZlkchfeEcHh3B/wGEZb8xUemtnbFzX65tvb8="; + hash = "sha256-FNMspluhQlGgQ4X7gJisakHTTmn/5PtQ+obK26PrXdg="; }; buildInputs = [ buildbot-pkg ]; diff --git a/pkgs/development/tools/continuous-integration/buildbot/worker.nix b/pkgs/development/tools/continuous-integration/buildbot/worker.nix index c87b8db563c96..eb613858f463c 100644 --- a/pkgs/development/tools/continuous-integration/buildbot/worker.nix +++ b/pkgs/development/tools/continuous-integration/buildbot/worker.nix @@ -28,7 +28,7 @@ buildPythonPackage (rec { src = fetchPypi { inherit pname version; - hash = "sha256-jihAPEzeegUEa/BZ93De7728IXjL7BkrwfPk5G6rnUw="; + hash = "sha256-7zpf1Xl5dYPJk8V5PQCx/v+sE9kH23UWM9QbE0fH4tA="; }; postPatch = '' diff --git a/pkgs/development/tools/continuous-integration/cirrus-cli/default.nix b/pkgs/development/tools/continuous-integration/cirrus-cli/default.nix index a9fdd32470bf5..4972f2cd90b1a 100644 --- a/pkgs/development/tools/continuous-integration/cirrus-cli/default.nix +++ b/pkgs/development/tools/continuous-integration/cirrus-cli/default.nix @@ -6,16 +6,16 @@ buildGoModule rec { pname = "cirrus-cli"; - version = "0.108.2"; + version = "0.110.0"; src = fetchFromGitHub { owner = "cirruslabs"; repo = pname; rev = "v${version}"; - sha256 = "sha256-3vlhT/BevVg0GSHNT/g4aomdgj/6Od3WiUywhdsfySE="; + sha256 = "sha256-5BMaOuiXz8SMfaB7qFvCyboGFKxzenkEVwj25Qh4MKw="; }; - vendorHash = "sha256-2PlgTvGCNB7kfpM4CeBQJkSmtvX1zkA53pSvh8VwuEk="; + vendorHash = "sha256-xJnBMSfYwx6uHuMjyR9IWGHwt3fNajDr6DW8o+J+lj8="; ldflags = [ "-X github.com/cirruslabs/cirrus-cli/internal/version.Version=v${version}" diff --git a/pkgs/development/tools/continuous-integration/drone-cli/default.nix b/pkgs/development/tools/continuous-integration/drone-cli/default.nix index ce5849048a66b..84432b82d495d 100644 --- a/pkgs/development/tools/continuous-integration/drone-cli/default.nix +++ b/pkgs/development/tools/continuous-integration/drone-cli/default.nix @@ -4,7 +4,7 @@ }: buildGoModule rec { - version = "1.7.0"; + version = "1.8.0"; pname = "drone-cli"; revision = "v${version}"; @@ -12,10 +12,10 @@ buildGoModule rec { owner = "harness"; repo = "drone-cli"; rev = revision; - hash = "sha256-PZ0M79duSctPepD5O+NdJZKhkyR21g/4P6loJtoWZiU="; + hash = "sha256-moxsGlm7Q9E0q9SZ2gZotn3tRbnbtwhDc9UNCCSb3pY="; }; - vendorHash = "sha256-JC7OR4ySDsVWmrBBTjpwZrkJlM8RJehbsvXW/VtA4VA="; + vendorHash = "sha256-rKZq2vIXvw4bZ6FXPqOip9dLiV5rSb1fWDJe3oxOBjw="; # patch taken from https://patch-diff.githubusercontent.com/raw/harness/drone-cli/pull/179.patch # but with go.mod changes removed due to conflict diff --git a/pkgs/development/tools/continuous-integration/fly/default.nix b/pkgs/development/tools/continuous-integration/fly/default.nix index 55df9269f9270..8c07f2ebb9104 100644 --- a/pkgs/development/tools/continuous-integration/fly/default.nix +++ b/pkgs/development/tools/continuous-integration/fly/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "fly"; - version = "7.11.0"; + version = "7.11.1"; src = fetchFromGitHub { owner = "concourse"; repo = "concourse"; rev = "v${version}"; - hash = "sha256-lp6EXdwmgmjhFxRQXn2P4iRrtJS1QTvg4225V/6E7MI="; + hash = "sha256-zbE81vsO3rhXrPGL11lBqg3lryndaHEbW+CBxP6PlPA="; }; - vendorHash = "sha256-p3EhXrRjAFG7Ayfj/ArAWO7KL3S/iR/nwFwXcDc+DSs="; + vendorHash = "sha256-Os76Kim+qznVtSY+GF3jgKz7Vmf7mRTcjZ6v8NnFY2U="; subPackages = [ "fly" ]; diff --git a/pkgs/development/tools/continuous-integration/github-runner/default.nix b/pkgs/development/tools/continuous-integration/github-runner/default.nix index c0c15a121738f..04dde366d8ada 100644 --- a/pkgs/development/tools/continuous-integration/github-runner/default.nix +++ b/pkgs/development/tools/continuous-integration/github-runner/default.nix @@ -23,13 +23,13 @@ assert builtins.all (x: builtins.elem x [ "node20" ]) nodeRuntimes; buildDotnetModule rec { pname = "github-runner"; - version = "2.311.0"; + version = "2.312.0"; src = fetchFromGitHub { owner = "actions"; repo = "runner"; rev = "v${version}"; - hash = "sha256-71SwPuX1XZygT/TdAHECudxFxsQuXrl/tcAYVAxfxfI="; + hash = "sha256-gSxo73o/5B6RsR5fNQ8pCv/adXrZdVPwFK4Sjwa3ZIQ="; leaveDotGit = true; postFetch = '' git -C $out rev-parse --short HEAD > $out/.git-revision @@ -160,6 +160,11 @@ buildDotnetModule rec { "UseExternalsTrimmedPackage" "ValidateHash" ] + ++ map (x: "GitHub.Runner.Common.Tests.Listener.SelfUpdaterV2L0.${x}") [ + "TestSelfUpdateAsync_DownloadRetry" + "TestSelfUpdateAsync_ValidateHash" + "TestSelfUpdateAsync" + ] ++ map (x: "GitHub.Runner.Common.Tests.Worker.ActionManagerL0.PrepareActions_${x}") [ "CompositeActionWithActionfile_CompositeContainerNested" "CompositeActionWithActionfile_CompositePrestepNested" diff --git a/pkgs/development/tools/continuous-integration/github-runner/deps.nix b/pkgs/development/tools/continuous-integration/github-runner/deps.nix index eef1830e147b4..d2db246003506 100644 --- a/pkgs/development/tools/continuous-integration/github-runner/deps.nix +++ b/pkgs/development/tools/continuous-integration/github-runner/deps.nix @@ -2,8 +2,12 @@ # Please dont edit it manually, your changes might get overwritten! { fetchNuGet }: [ + (fetchNuGet { pname = "Azure.Core"; version = "1.36.0"; sha256 = "14lsc6zik7s5by3gp86pf77wh58fcqrjy2xhx5p03gmhdn6iz2cn"; }) + (fetchNuGet { pname = "Azure.Storage.Blobs"; version = "12.19.1"; sha256 = "0rdgvlbqkcyc356xs0wzwbm92lf95621mf2shk30i3ahp0k0gd0k"; }) + (fetchNuGet { pname = "Azure.Storage.Common"; version = "12.18.1"; sha256 = "1hjzggfv24598601jhcdfcaflbd5b97aglhxy7a5ymy1aszhwp9k"; }) (fetchNuGet { pname = "Castle.Core"; version = "4.4.0"; sha256 = "0rpcbmyhckvlvp6vbzpj03c1gqz56ixc6f15vgmxmyf1g40c24pf"; }) (fetchNuGet { pname = "Microsoft.AspNet.WebApi.Client"; version = "5.2.9"; sha256 = "1sy1q36bm9fz3gi780w4jgysw3dwaz2f3a5gcn6jxw1gkmdasb08"; }) + (fetchNuGet { pname = "Microsoft.Bcl.AsyncInterfaces"; version = "1.1.1"; sha256 = "0a1ahssqds2ympr7s4xcxv5y8jgxs7ahd6ah6fbgglj4rki1f1vw"; }) (fetchNuGet { pname = "Microsoft.CodeCoverage"; version = "17.2.0"; sha256 = "018yl113i037m5qhm3z6csb0c4l8kj412dxw2dagdbj07qbxwikj"; }) (fetchNuGet { pname = "Microsoft.CSharp"; version = "4.0.1"; sha256 = "0zxc0apx1gcx361jlq8smc9pfdgmyjh6hpka8dypc9w23nlsh6yj"; }) (fetchNuGet { pname = "Microsoft.IdentityModel.Logging"; version = "5.2.1"; sha256 = "1gpka9jm2gl6f07pcwzwvaxw9xq1a19i9fskn0qs921c5grhlp3g"; }) @@ -109,6 +113,7 @@ (fetchNuGet { pname = "System.Diagnostics.Debug"; version = "4.0.11-rc2-24027"; sha256 = "11rz0kdzk4bw9yc85jmskxla7i1bs61kladqzvymrg8xn3lk488a"; }) (fetchNuGet { pname = "System.Diagnostics.Debug"; version = "4.3.0"; sha256 = "00yjlf19wjydyr6cfviaph3vsjzg3d5nvnya26i2fvfg53sknh3y"; }) (fetchNuGet { pname = "System.Diagnostics.DiagnosticSource"; version = "4.3.0"; sha256 = "0z6m3pbiy0qw6rn3n209rrzf9x1k4002zh90vwcrsym09ipm2liq"; }) + (fetchNuGet { pname = "System.Diagnostics.DiagnosticSource"; version = "6.0.1"; sha256 = "17h8bkcv0vf9a7gp9ajkd107zid98wql5kzlzwrjm5nm92nk0bsy"; }) (fetchNuGet { pname = "System.Diagnostics.Tools"; version = "4.0.1"; sha256 = "19cknvg07yhakcvpxg3cxa0bwadplin6kyxd8mpjjpwnp56nl85x"; }) (fetchNuGet { pname = "System.Diagnostics.Tools"; version = "4.0.1-rc2-24027"; sha256 = "080gd86c1pkfkzz67ispkzxc426lfh82zajayiizbgwd6yqa7fv5"; }) (fetchNuGet { pname = "System.Diagnostics.Tools"; version = "4.3.0"; sha256 = "0in3pic3s2ddyibi8cvgl102zmvp9r9mchh82ns9f0ms4basylw1"; }) @@ -138,11 +143,13 @@ (fetchNuGet { pname = "System.IO.FileSystem.Primitives"; version = "4.0.1"; sha256 = "1s0mniajj3lvbyf7vfb5shp4ink5yibsx945k6lvxa96r8la1612"; }) (fetchNuGet { pname = "System.IO.FileSystem.Primitives"; version = "4.0.1-rc2-24027"; sha256 = "04q3sxrfxqgig9scmxblxlb6n6fypv535lby26pi20ixszs19dxc"; }) (fetchNuGet { pname = "System.IO.FileSystem.Primitives"; version = "4.3.0"; sha256 = "0j6ndgglcf4brg2lz4wzsh1av1gh8xrzdsn9f0yznskhqn1xzj9c"; }) + (fetchNuGet { pname = "System.IO.Hashing"; version = "6.0.0"; sha256 = "0lga30s3cllg2jkwldgabwrb0jg3dzj859bwj95xhnm3zcklnb41"; }) (fetchNuGet { pname = "System.Linq"; version = "4.1.0"; sha256 = "1ppg83svb39hj4hpp5k7kcryzrf3sfnm08vxd5sm2drrijsla2k5"; }) (fetchNuGet { pname = "System.Linq"; version = "4.1.0-rc2-24027"; sha256 = "0icbsy0vq07achclz32jvnnfdchkgylsjj67gra3fn5906s40n24"; }) (fetchNuGet { pname = "System.Linq"; version = "4.3.0"; sha256 = "1w0gmba695rbr80l1k2h4mrwzbzsyfl2z4klmpbsvsg5pm4a56s7"; }) (fetchNuGet { pname = "System.Linq.Expressions"; version = "4.1.0"; sha256 = "1gpdxl6ip06cnab7n3zlcg6mqp7kknf73s8wjinzi4p0apw82fpg"; }) (fetchNuGet { pname = "System.Linq.Expressions"; version = "4.3.0"; sha256 = "0ky2nrcvh70rqq88m9a5yqabsl4fyd17bpr63iy2mbivjs2nyypv"; }) + (fetchNuGet { pname = "System.Memory.Data"; version = "1.0.2"; sha256 = "1p8qdg0gzxhjvabryc3xws2629pj8w5zz2iqh86kw8sh0rann9ay"; }) (fetchNuGet { pname = "System.Net.Http"; version = "4.3.0"; sha256 = "1i4gc757xqrzflbk7kc5ksn20kwwfjhw9w7pgdkn19y3cgnl302j"; }) (fetchNuGet { pname = "System.Net.Http"; version = "4.3.4"; sha256 = "0kdp31b8819v88l719j6my0yas6myv9d1viql3qz5577mv819jhl"; }) (fetchNuGet { pname = "System.Net.NameResolution"; version = "4.3.0"; sha256 = "15r75pwc0rm3vvwsn8rvm2krf929mjfwliv0mpicjnii24470rkq"; }) @@ -150,6 +157,7 @@ (fetchNuGet { pname = "System.Net.Primitives"; version = "4.3.0"; sha256 = "0c87k50rmdgmxx7df2khd9qj7q35j9rzdmm2572cc55dygmdk3ii"; }) (fetchNuGet { pname = "System.Net.Sockets"; version = "4.1.0-rc2-24027"; sha256 = "062kbbvm17nhwmcxjnakfv3i23vrk6c9gmz6x8q79kcr5hxr40qs"; }) (fetchNuGet { pname = "System.Net.Sockets"; version = "4.3.0"; sha256 = "1ssa65k6chcgi6mfmzrznvqaxk8jp0gvl77xhf1hbzakjnpxspla"; }) + (fetchNuGet { pname = "System.Numerics.Vectors"; version = "4.5.0"; sha256 = "1kzrj37yzawf1b19jq0253rcs8hsq1l2q8g69d7ipnhzb0h97m59"; }) (fetchNuGet { pname = "System.ObjectModel"; version = "4.0.12"; sha256 = "1sybkfi60a4588xn34nd9a58png36i0xr4y4v4kqpg8wlvy5krrj"; }) (fetchNuGet { pname = "System.ObjectModel"; version = "4.0.12-rc2-24027"; sha256 = "065p89awfiz9kb304hqs7wkfpykd9z9kkv84ihm813msv54i8lvj"; }) (fetchNuGet { pname = "System.ObjectModel"; version = "4.3.0"; sha256 = "191p63zy5rpqx7dnrb3h7prvgixmk168fhvvkkvhlazncf8r3nc2"; }) @@ -180,6 +188,7 @@ (fetchNuGet { pname = "System.Runtime"; version = "4.1.0-rc2-24027"; sha256 = "1g5ghiyfb8njzfz39cswizjbxgaamil7kgkzgab93fhgk7jksmyg"; }) (fetchNuGet { pname = "System.Runtime"; version = "4.3.0"; sha256 = "066ixvgbf2c929kgknshcxqj6539ax7b9m570cp8n179cpfkapz7"; }) (fetchNuGet { pname = "System.Runtime"; version = "4.3.1"; sha256 = "03ch4d2acf6q037a4njxpll2kkx3dwzlg07yxr4z5m6j1kqgmm27"; }) + (fetchNuGet { pname = "System.Runtime.CompilerServices.Unsafe"; version = "6.0.0"; sha256 = "0qm741kh4rh57wky16sq4m0v05fxmkjjr87krycf5vp9f0zbahbc"; }) (fetchNuGet { pname = "System.Runtime.Extensions"; version = "4.1.0"; sha256 = "0rw4rm4vsm3h3szxp9iijc3ksyviwsv6f63dng3vhqyg4vjdkc2z"; }) (fetchNuGet { pname = "System.Runtime.Extensions"; version = "4.1.0-rc2-24027"; sha256 = "09k4c6is31dpccwgb749055m2ad0b84rnapk69fmj3wjswacg26p"; }) (fetchNuGet { pname = "System.Runtime.Extensions"; version = "4.3.0"; sha256 = "1ykp3dnhwvm48nap8q23893hagf665k0kn3cbgsqpwzbijdcgc60"; }) @@ -221,6 +230,8 @@ (fetchNuGet { pname = "System.Text.Encoding.Extensions"; version = "4.0.11"; sha256 = "08nsfrpiwsg9x5ml4xyl3zyvjfdi4mvbqf93kjdh11j4fwkznizs"; }) (fetchNuGet { pname = "System.Text.Encoding.Extensions"; version = "4.0.11-rc2-24027"; sha256 = "02xic3hhfy48s50bxh25as1l9v3afgrhlxqfnd5ki4qirxly7qs6"; }) (fetchNuGet { pname = "System.Text.Encoding.Extensions"; version = "4.3.0"; sha256 = "11q1y8hh5hrp5a3kw25cb6l00v5l5dvirkz8jr3sq00h1xgcgrxy"; }) + (fetchNuGet { pname = "System.Text.Encodings.Web"; version = "4.7.2"; sha256 = "0ap286ykazrl42if59bxhzv81safdfrrmfqr3112siwyajx4wih9"; }) + (fetchNuGet { pname = "System.Text.Json"; version = "4.7.2"; sha256 = "10xj1pw2dgd42anikvj9qm23ccssrcp7dpznpj4j7xjp1ikhy3y4"; }) (fetchNuGet { pname = "System.Text.RegularExpressions"; version = "4.1.0"; sha256 = "1mw7vfkkyd04yn2fbhm38msk7dz2xwvib14ygjsb8dq2lcvr18y7"; }) (fetchNuGet { pname = "System.Text.RegularExpressions"; version = "4.3.0"; sha256 = "1bgq51k7fwld0njylfn7qc5fmwrk2137gdq7djqdsw347paa9c2l"; }) (fetchNuGet { pname = "System.Text.RegularExpressions"; version = "4.3.1"; sha256 = "1hr4qqzrij3y2ayi8jj70yfg0i9imf6fpdam1gr8qgp795kh86qg"; }) @@ -235,6 +246,7 @@ (fetchNuGet { pname = "System.Threading.Tasks.Extensions"; version = "4.0.0-rc2-24027"; sha256 = "108sdqpy3ga6gzksl59w1k21a3jlrh8x2igyxh3dm3212rca1pyg"; }) (fetchNuGet { pname = "System.Threading.Tasks.Extensions"; version = "4.3.0"; sha256 = "1xxcx2xh8jin360yjwm4x4cf5y3a2bwpn2ygkfkwkicz7zk50s2z"; }) (fetchNuGet { pname = "System.Threading.Tasks.Extensions"; version = "4.5.1"; sha256 = "1ikrplvw4m6pzjbq3bfbpr572n4i9mni577zvmrkaygvx85q3myw"; }) + (fetchNuGet { pname = "System.Threading.Tasks.Extensions"; version = "4.5.4"; sha256 = "0y6ncasgfcgnjrhynaf0lwpkpkmv4a07sswwkwbwb5h7riisj153"; }) (fetchNuGet { pname = "System.Threading.ThreadPool"; version = "4.3.0"; sha256 = "027s1f4sbx0y1xqw2irqn6x161lzj8qwvnh2gn78ciiczdv10vf1"; }) (fetchNuGet { pname = "System.Threading.Timer"; version = "4.0.1-rc2-24027"; sha256 = "06kwi42lgf3zw3b5yw668ammbjl6208y182wyqaaqrxgn5gs4yh7"; }) (fetchNuGet { pname = "System.Threading.Timer"; version = "4.3.0"; sha256 = "1nx773nsx6z5whv8kaa1wjh037id2f1cxhb69pvgv12hd2b6qs56"; }) diff --git a/pkgs/development/tools/continuous-integration/jenkins/default.nix b/pkgs/development/tools/continuous-integration/jenkins/default.nix index 0298fe20055a3..e88c92d83b0d0 100644 --- a/pkgs/development/tools/continuous-integration/jenkins/default.nix +++ b/pkgs/development/tools/continuous-integration/jenkins/default.nix @@ -4,11 +4,11 @@ stdenv.mkDerivation rec { pname = "jenkins"; - version = "2.426.2"; + version = "2.426.3"; src = fetchurl { url = "https://get.jenkins.io/war-stable/${version}/jenkins.war"; - hash = "sha256-NzG59Elz+78+U1+YqAwhqtlxnLTuqKHlnpdMEf6EaEg="; + hash = "sha256-q0OSQ6agfi54/nw0CMWWCfe+O/JolHrCFGV6+Wq60QY="; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/development/tools/continuous-integration/woodpecker-plugin-git/default.nix b/pkgs/development/tools/continuous-integration/woodpecker-plugin-git/default.nix index a3f27e533e7da..c058002376373 100644 --- a/pkgs/development/tools/continuous-integration/woodpecker-plugin-git/default.nix +++ b/pkgs/development/tools/continuous-integration/woodpecker-plugin-git/default.nix @@ -7,16 +7,16 @@ buildGoModule rec { pname = "woodpecker-plugin-git"; - version = "2.4.0"; + version = "2.5.0"; src = fetchFromGitHub { owner = "woodpecker-ci"; repo = "plugin-git"; rev = "refs/tags/${version}"; - hash = "sha256-9aK6c2uUBhTzBni6S4XwevdVRxswiMYGJKwmKOGHIbg="; + hash = "sha256-vQcHEsOJFMbrt5KpoHB59g5gIxwXQuJpudhu2qbgCY8="; }; - vendorHash = "sha256-ol5k37gGFsyeEnGOVcJaerkIejShHyNCBu4RZ8WyHvU="; + vendorHash = "sha256-nPeF6Z+d69o1JwCUlzVREx8DyIqokHIfTRC1/S5XG6A="; CGO_ENABLED = "0"; diff --git a/pkgs/development/tools/continuous-integration/woodpecker/common.nix b/pkgs/development/tools/continuous-integration/woodpecker/common.nix index cdb54fa07f713..bad183d981256 100644 --- a/pkgs/development/tools/continuous-integration/woodpecker/common.nix +++ b/pkgs/development/tools/continuous-integration/woodpecker/common.nix @@ -1,18 +1,17 @@ -{ lib, fetchFromGitHub }: +{ lib, fetchzip }: let - version = "1.0.5"; - srcHash = "sha256-tkgkhYuLHfmT42P+UMZ7uNB2wBKo0YGiw0a5RoMAu6M="; - vendorHash = "sha256-QTTnTPOgP+FlbqXNCGJc9VuBzQcMujpvFB3+DykYTPY="; - yarnHash = "sha256-TrcTc5svLLSedRC8gCwIBW7/mtHo+uSNZGImtRiVJ0w="; + version = "2.3.0"; + srcHash = "sha256-r5TV5WJW2klSlrOG6EjfUgLyHhMI+BMUTY/2JIUgd0Q="; + # The tarball contains vendored dependencies + vendorHash = null; in { - inherit version yarnHash vendorHash; + inherit version vendorHash; - src = fetchFromGitHub { - owner = "woodpecker-ci"; - repo = "woodpecker"; - rev = "v${version}"; + src = fetchzip { + url = "https://github.com/woodpecker-ci/woodpecker/releases/download/v${version}/woodpecker-src.tar.gz"; hash = srcHash; + stripRoot = false; }; postInstall = '' @@ -26,7 +25,7 @@ in ldflags = [ "-s" "-w" - "-X github.com/woodpecker-ci/woodpecker/version.Version=${version}" + "-X go.woodpecker-ci.org/woodpecker/v2/version.Version=${version}" ]; meta = with lib; { diff --git a/pkgs/development/tools/continuous-integration/woodpecker/frontend.nix b/pkgs/development/tools/continuous-integration/woodpecker/frontend.nix deleted file mode 100644 index 01767d6fe00eb..0000000000000 --- a/pkgs/development/tools/continuous-integration/woodpecker/frontend.nix +++ /dev/null @@ -1,57 +0,0 @@ -{ lib, buildPackages, callPackage, fetchFromGitHub, fetchYarnDeps, mkYarnPackage }: -let - common = callPackage ./common.nix { }; - - esbuild_0_17_19 = buildPackages.esbuild.overrideAttrs (_: rec { - version = "0.17.19"; - - src = fetchFromGitHub { - owner = "evanw"; - repo = "esbuild"; - rev = "v${version}"; - hash = "sha256-PLC7OJLSOiDq4OjvrdfCawZPfbfuZix4Waopzrj8qsU="; - }; - - vendorHash = "sha256-+BfxCyg0KkDQpHt/wycy/8CTG6YBA/VJvJFhhzUnSiQ="; - }); -in -mkYarnPackage { - pname = "woodpecker-frontend"; - inherit (common) version; - - src = "${common.src}/web"; - - packageJSON = ./woodpecker-package.json; - yarnLock = ./yarn.lock; - - offlineCache = fetchYarnDeps { - yarnLock = ./yarn.lock; - hash = common.yarnHash; - }; - - ESBUILD_BINARY_PATH = lib.getExe esbuild_0_17_19; - - buildPhase = '' - runHook preBuild - - yarn --offline build - - runHook postBuild - ''; - - installPhase = '' - runHook preInstall - - cp -R deps/woodpecker-ci/dist $out - echo "${common.version}" > "$out/version" - - runHook postInstall - ''; - - # Do not attempt generating a tarball for woodpecker-frontend again. - doDist = false; - - meta = common.meta // { - description = "Woodpecker Continuous Integration server frontend"; - }; -} diff --git a/pkgs/development/tools/continuous-integration/woodpecker/server.nix b/pkgs/development/tools/continuous-integration/woodpecker/server.nix index 874949dff2f49..fb232a19ba2e5 100644 --- a/pkgs/development/tools/continuous-integration/woodpecker/server.nix +++ b/pkgs/development/tools/continuous-integration/woodpecker/server.nix @@ -1,4 +1,4 @@ -{ buildGoModule, callPackage, woodpecker-frontend }: +{ buildGoModule, callPackage }: let common = callPackage ./common.nix { }; in @@ -6,17 +6,11 @@ buildGoModule { pname = "woodpecker-server"; inherit (common) version src ldflags postInstall vendorHash; - postPatch = '' - cp -r ${woodpecker-frontend} web/dist - ''; - subPackages = "cmd/server"; CGO_ENABLED = 1; passthru = { - inherit woodpecker-frontend; - updateScript = ./update.sh; }; diff --git a/pkgs/development/tools/continuous-integration/woodpecker/update.sh b/pkgs/development/tools/continuous-integration/woodpecker/update.sh index bfe948e8f5072..4ee52f9aded28 100755 --- a/pkgs/development/tools/continuous-integration/woodpecker/update.sh +++ b/pkgs/development/tools/continuous-integration/woodpecker/update.sh @@ -1,5 +1,5 @@ #!/usr/bin/env nix-shell -#!nix-shell -i bash -p nix wget prefetch-yarn-deps nix-prefetch-github jq nix-prefetch pnpm-lock-export +#!nix-shell -i bash -p nix wget jq nix-prefetch # shellcheck shell=bash @@ -26,28 +26,9 @@ fi # strip leading "v" version="${version#v}" +sed -i -E -e "s#version = \".*\"#version = \"$version\"#" common.nix # Woodpecker repository -src_hash=$(nix-prefetch-github woodpecker-ci woodpecker --rev "v${version}" | jq -r .hash) - -# Go modules -vendorHash=$(nix-prefetch '{ sha256 }: (callPackage (import ./cli.nix) { }).goModules.overrideAttrs (_: { modHash = sha256; })') - -# Front-end dependencies -woodpecker_src="https://raw.githubusercontent.com/woodpecker-ci/woodpecker/v$version" -wget "${TOKEN_ARGS[@]}" "$woodpecker_src/web/package.json" -O woodpecker-package.json - -trap 'rm -rf pnpm-lock.yaml' EXIT -wget "${TOKEN_ARGS[@]}" "$woodpecker_src/web/pnpm-lock.yaml" -pnpm-lock-export --schema yarn.lock@v1 -yarn_hash=$(prefetch-yarn-deps yarn.lock) - -# Use friendlier hashes +src_hash=$(nix-prefetch-url --type sha256 --unpack "https://github.com/woodpecker-ci/woodpecker/releases/download/v$version/woodpecker-src.tar.gz") src_hash=$(nix hash to-sri --type sha256 "$src_hash") -vendorHash=$(nix hash to-sri --type sha256 "$vendorHash") -yarn_hash=$(nix hash to-sri --type sha256 "$yarn_hash") - -sed -i -E -e "s#version = \".*\"#version = \"$version\"#" common.nix sed -i -E -e "s#srcHash = \".*\"#srcHash = \"$src_hash\"#" common.nix -sed -i -E -e "s#vendorHash = \".*\"#vendorHash = \"$vendorHash\"#" common.nix -sed -i -E -e "s#yarnHash = \".*\"#yarnHash = \"$yarn_hash\"#" common.nix diff --git a/pkgs/development/tools/continuous-integration/woodpecker/woodpecker-package.json b/pkgs/development/tools/continuous-integration/woodpecker/woodpecker-package.json deleted file mode 100644 index 565c05aa8c2d1..0000000000000 --- a/pkgs/development/tools/continuous-integration/woodpecker/woodpecker-package.json +++ /dev/null @@ -1,77 +0,0 @@ -{ - "name": "woodpecker-ci", - "author": "Woodpecker CI", - "version": "0.0.0", - "license": "Apache-2.0", - "engines": { - "node": ">=14" - }, - "scripts": { - "start": "vite", - "build": "vite build --base=/BASE_PATH", - "serve": "vite preview", - "lint": "eslint --max-warnings 0 --ext .js,.ts,.vue,.json .", - "formatcheck": "prettier -c .", - "format:fix": "prettier --write .", - "typecheck": "vue-tsc --noEmit", - "test": "echo 'No tests configured' && exit 0" - }, - "dependencies": { - "@intlify/unplugin-vue-i18n": "^0.10.1", - "@kyvg/vue3-notification": "^2.9.1", - "@vueuse/core": "^9.13.0", - "ansi_up": "^5.2.1", - "dayjs": "^1.11.9", - "floating-vue": "^2.0.0-beta.24", - "fuse.js": "^6.6.2", - "humanize-duration": "^3.28.0", - "javascript-time-ago": "^2.5.9", - "lodash": "^4.17.21", - "node-emoji": "^1.11.0", - "pinia": "^2.1.4", - "prismjs": "^1.29.0", - "vue": "^3.3.4", - "vue-i18n": "^9.2.2", - "vue-router": "^4.2.2" - }, - "devDependencies": { - "@iconify/json": "^2.2.85", - "@types/humanize-duration": "^3.27.1", - "@types/javascript-time-ago": "^2.0.3", - "@types/lodash": "^4.14.195", - "@types/node": "^18.16.19", - "@types/node-emoji": "^1.8.2", - "@types/prismjs": "^1.26.0", - "@typescript-eslint/eslint-plugin": "^5.60.1", - "@typescript-eslint/parser": "^5.60.1", - "@vitejs/plugin-vue": "^4.2.3", - "@vue/compiler-sfc": "^3.3.4", - "eslint": "^8.44.0", - "eslint-config-airbnb-base": "^15.0.0", - "eslint-config-airbnb-typescript": "^17.0.0", - "eslint-config-prettier": "^8.8.0", - "eslint-plugin-import": "^2.27.5", - "eslint-plugin-prettier": "^4.2.1", - "eslint-plugin-promise": "^6.1.1", - "eslint-plugin-simple-import-sort": "^10.0.0", - "eslint-plugin-vue": "^9.15.1", - "eslint-plugin-vue-scoped-css": "^2.5.0", - "prettier": "^2.8.8", - "typescript": "5.0.3", - "unplugin-icons": "^0.16.3", - "unplugin-vue-components": "^0.24.1", - "vite": "^4.3.9", - "vite-plugin-prismjs": "^0.0.8", - "vite-plugin-windicss": "^1.9.0", - "vite-svg-loader": "^4.0.0", - "vue-eslint-parser": "^9.3.1", - "vue-tsc": "^1.8.3", - "windicss": "^3.5.6" - }, - "pnpm": { - "overrides": { - "semver@<7.5.2": ">=7.5.2", - "postcss@<8.4.31": ">=8.4.31" - } - } -} diff --git a/pkgs/development/tools/continuous-integration/woodpecker/yarn.lock b/pkgs/development/tools/continuous-integration/woodpecker/yarn.lock deleted file mode 100644 index cf7c076e748b8..0000000000000 --- a/pkgs/development/tools/continuous-integration/woodpecker/yarn.lock +++ /dev/null @@ -1,3219 +0,0 @@ -# THIS IS AN AUTOGENERATED FILE. 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"https://registry.npmjs.org/yocto-queue/-/yocto-queue-0.1.0.tgz" - integrity "sha512-rVksvsnNCdJ/ohGc6xgPwyN8eheCxsiLM8mxuE/t/mOVqJewPuO1miLpTHQiRgTKCLexL4MeAFVagts7HmNZ2Q==" diff --git a/pkgs/development/tools/ctlptl/default.nix b/pkgs/development/tools/ctlptl/default.nix index 4d50a3395b253..576b3095922a2 100644 --- a/pkgs/development/tools/ctlptl/default.nix +++ b/pkgs/development/tools/ctlptl/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "ctlptl"; - version = "0.8.25"; + version = "0.8.26"; src = fetchFromGitHub { owner = "tilt-dev"; repo = pname; rev = "v${version}"; - hash = "sha256-rO3kOZGAI2K4+sFx2ka1lufTWauUY+qRWpoweT33cQw="; + hash = "sha256-Qi9fN66YLow8TO/4GmJBIcj8CnH7jbpyryjnMG6yp0U="; }; - vendorHash = "sha256-hWmk/QmkSvRvjt9vcPG07sVwWlqfZrYvY0MGaeKhvTI="; + vendorHash = "sha256-gortoYTYGtvhM1XWVhI2bB+cKtbTADpKl5W9h1QSEPc="; nativeBuildInputs = [ installShellFiles ]; diff --git a/pkgs/development/tools/database/atlas/default.nix b/pkgs/development/tools/database/atlas/default.nix index 4832a1d280084..7d275071ee4a3 100644 --- a/pkgs/development/tools/database/atlas/default.nix +++ b/pkgs/development/tools/database/atlas/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "atlas"; - version = "0.18.0"; + version = "0.19.0"; src = fetchFromGitHub { owner = "ariga"; repo = "atlas"; rev = "v${version}"; - hash = "sha256-xbQ5ZhyCQY/IosBPMD8MKQ1KnIymPD8IhUKaIdXHAok="; + hash = "sha256-aTmEQFE+W8qRn7NlMYNr1yXYHLfmvg9Wrd8fzEeaYAo="; }; modRoot = "cmd/atlas"; diff --git a/pkgs/development/tools/database/clickhouse-backup/default.nix b/pkgs/development/tools/database/clickhouse-backup/default.nix index 97ebb25b1ba87..30de99ba968b2 100644 --- a/pkgs/development/tools/database/clickhouse-backup/default.nix +++ b/pkgs/development/tools/database/clickhouse-backup/default.nix @@ -7,16 +7,16 @@ buildGoModule rec { pname = "clickhouse-backup"; - version = "2.4.15"; + version = "2.4.25"; src = fetchFromGitHub { owner = "AlexAkulov"; repo = pname; rev = "v${version}"; - sha256 = "sha256-J56gew81ZdYZHfpBZcyCURFrVX0GGl/iMploXA1UllU="; + sha256 = "sha256-w5RImVi1Jyudu7G9uKRHKSgoEruvhkznm0MjYsgBBxo="; }; - vendorHash = "sha256-P+EE5+GRBqBv5WgRgMYJc4bfHuHDh9q8kOIhlEswc3g="; + vendorHash = "sha256-DTykJR/dMIDKL5fTzDivsRf2DIfzJcm+AN3rQHflpJo="; ldflags = [ "-X main.version=${version}" diff --git a/pkgs/development/tools/database/dbmate/default.nix b/pkgs/development/tools/database/dbmate/default.nix index 0c132a3c779b6..84bd8d8235f21 100644 --- a/pkgs/development/tools/database/dbmate/default.nix +++ b/pkgs/development/tools/database/dbmate/default.nix @@ -5,16 +5,16 @@ buildGoModule rec { pname = "dbmate"; - version = "2.10.0"; + version = "2.11.0"; src = fetchFromGitHub { owner = "amacneil"; repo = "dbmate"; rev = "refs/tags/v${version}"; - hash = "sha256-gJ1kYedws20C669Gonmsui59a/TvPXawqkx5k4pPn8M="; + hash = "sha256-kY91ToCEl1bNdeIKDAAR3q7053oyFhx+THre7Syw96g="; }; - vendorHash = "sha256-JjFBUjSbHnJE7FPa11lQBx7Dvv7uBkuvLYqeuaDkHJM="; + vendorHash = "sha256-z33Ayxc/ftNHh5zunDu0AlamuoSglX4aqOKQLuYT3+s="; doCheck = false; diff --git a/pkgs/development/tools/database/ephemeralpg/default.nix b/pkgs/development/tools/database/ephemeralpg/default.nix index 0fb3ae81030bb..b50d22d76e78f 100644 --- a/pkgs/development/tools/database/ephemeralpg/default.nix +++ b/pkgs/development/tools/database/ephemeralpg/default.nix @@ -1,10 +1,10 @@ { lib, stdenv, fetchurl, postgresql, getopt, makeWrapper }: stdenv.mkDerivation rec { pname = "ephemeralpg"; - version = "3.1"; + version = "3.3"; src = fetchurl { - url = "http://ephemeralpg.org/code/${pname}-${version}.tar.gz"; - sha256 = "1ap22ki8yz6agd0qybcjgs4b9izw1rwwcgpxn3jah2ccfyax34s6"; + url = "https://eradman.com/ephemeralpg/code/${pname}-${version}.tar.gz"; + hash = "sha256-pVQrfSpwJnxCRXAUpZQZsb0Z/wlLbjdaYmhVevgHrgo="; }; nativeBuildInputs = [ makeWrapper ]; installPhase = '' @@ -15,8 +15,8 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Run tests on an isolated, temporary PostgreSQL database"; license = licenses.isc; - homepage = "http://ephemeralpg.org/"; + homepage = "https://eradman.com/ephemeralpg/"; platforms = platforms.all; - maintainers = with maintainers; [ hrdinka ]; + maintainers = with maintainers; [ hrdinka medv ]; }; } diff --git a/pkgs/development/tools/database/liquibase/default.nix b/pkgs/development/tools/database/liquibase/default.nix index 4880659c04388..b9928c41ba606 100644 --- a/pkgs/development/tools/database/liquibase/default.nix +++ b/pkgs/development/tools/database/liquibase/default.nix @@ -25,11 +25,11 @@ in stdenv.mkDerivation rec { pname = "liquibase"; - version = "4.24.0"; + version = "4.25.1"; src = fetchurl { url = "https://github.com/liquibase/liquibase/releases/download/v${version}/${pname}-${version}.tar.gz"; - hash = "sha256-bs9jinW1AbeYGJ2oJOFn8p25NHcYYQnyVJUIxiZtCyo="; + hash = "sha256-iyt6qOx1XU7lL6AhDNKiRP0W7WlfxKciRVYpUHdtKlY="; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/development/tools/database/litecli/default.nix b/pkgs/development/tools/database/litecli/default.nix index 3158ec5dc6708..2cda1e05c609e 100644 --- a/pkgs/development/tools/database/litecli/default.nix +++ b/pkgs/development/tools/database/litecli/default.nix @@ -5,12 +5,12 @@ python3Packages.buildPythonApplication rec { pname = "litecli"; - version = "1.9.0"; + version = "1.10.0"; disabled = python3Packages.pythonOlder "3.4"; src = fetchPypi { inherit pname version; - sha256 = "sha256-Ia8s+gg91N8ePMqiohFxKbXxchJ1b1luoJDilndsJ6E="; + sha256 = "sha256-7p4qk9GTpVXA5mHtCDlDpvkyqcjowme2ibRp+ax6Pgw="; }; propagatedBuildInputs = with python3Packages; [ diff --git a/pkgs/development/tools/database/litefs/default.nix b/pkgs/development/tools/database/litefs/default.nix index d4077a2388fff..e3dbdd780cd87 100644 --- a/pkgs/development/tools/database/litefs/default.nix +++ b/pkgs/development/tools/database/litefs/default.nix @@ -5,13 +5,13 @@ buildGoModule rec { pname = "litefs"; - version = "0.5.10"; + version = "0.5.11"; src = fetchFromGitHub { owner = "superfly"; repo = pname; rev = "v${version}"; - sha256 = "sha256-e7RBiUHMndOz1n8gWlx+4ifnueWgPu482KIAXaSEhl0="; + sha256 = "sha256-I12bKImZkvAMyfwb6r/NxE+BcUk+SalN+cIDXP0q4xA="; }; vendorHash = "sha256-FcYPe4arb+jbxj4Tl6bRRAnkEvw0rkECIo8/zC79lOA="; @@ -39,5 +39,6 @@ buildGoModule rec { homepage = "https://github.com/superfly/litefs"; license = licenses.asl20; maintainers = with maintainers; [ dit7ya ]; + mainProgram = "litefs"; }; } diff --git a/pkgs/development/tools/database/pg_activity/default.nix b/pkgs/development/tools/database/pg_activity/default.nix index c3ec5f9d58027..b6b543125195b 100644 --- a/pkgs/development/tools/database/pg_activity/default.nix +++ b/pkgs/development/tools/database/pg_activity/default.nix @@ -2,14 +2,14 @@ python3Packages.buildPythonApplication rec { pname = "pg_activity"; - version = "3.0.3"; + version = "3.4.2"; disabled = python3Packages.pythonOlder "3.6"; src = fetchFromGitHub { owner = "dalibo"; repo = pname; rev = "refs/tags/v${version}"; - sha256 = "sha256-djpBdhCgtlm6+DiZVKSKh0nu30YVm/qZHlBHPtdObfU="; + sha256 = "sha256-7ML/xI1rQUqD9gm+1+yOdIesivAnl7fA8fgk67ru3Kc="; }; propagatedBuildInputs = with python3Packages; [ diff --git a/pkgs/development/tools/database/pgweb/default.nix b/pkgs/development/tools/database/pgweb/default.nix index affda7ff49e20..ef0f64a73a171 100644 --- a/pkgs/development/tools/database/pgweb/default.nix +++ b/pkgs/development/tools/database/pgweb/default.nix @@ -7,13 +7,13 @@ buildGoModule rec { pname = "pgweb"; - version = "0.14.2"; + version = "0.14.3"; src = fetchFromGitHub { owner = "sosedoff"; repo = pname; rev = "v${version}"; - hash = "sha256-gM7hqFriXkcwNO+I3d138kfp1F4YsO/Qbq0NzMszkwM="; + hash = "sha256-We7MyKOdauf93tBihvjouEiZ4FnkvsUtfJpswK6ef7Q="; }; postPatch = '' diff --git a/pkgs/development/tools/database/sqlcl/default.nix b/pkgs/development/tools/database/sqlcl/default.nix index 324270ee7c239..60421c59ed49f 100644 --- a/pkgs/development/tools/database/sqlcl/default.nix +++ b/pkgs/development/tools/database/sqlcl/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation (finalAttrs: { pname = "sqlcl"; - version = "23.3.0.270.1251"; + version = "23.4.0.023.2321"; src = fetchurl { url = "https://download.oracle.com/otn_software/java/sqldeveloper/sqlcl-${finalAttrs.version}.zip"; - hash = "sha256-TkQkMtCTKUdfVx9sfAJVJP4nAaQmG4SDcduwaFfAEGs="; + hash = "sha256-8K2yuLYMJI9fFeDcHpWHYmIxZGC06/heYBEW1z2tGc4="; }; nativeBuildInputs = [ makeWrapper unzip ]; diff --git a/pkgs/development/tools/database/sqlite-web/default.nix b/pkgs/development/tools/database/sqlite-web/default.nix index ee333ac027446..351c5475ea0e3 100644 --- a/pkgs/development/tools/database/sqlite-web/default.nix +++ b/pkgs/development/tools/database/sqlite-web/default.nix @@ -5,11 +5,11 @@ python3Packages.buildPythonApplication rec { pname = "sqlite-web"; - version = "0.3.6"; + version = "0.6.2"; src = fetchPypi { inherit pname version; - sha256 = "17pymadm063358nji70xzma64zkfv26c3pai5i1whsfp9ahqzasg"; + sha256 = "sha256-VIbmYN6KjCRpE+kvJyBV75deYmh+zRjcQXZ2/7mseYU="; }; propagatedBuildInputs = with python3Packages; [ flask peewee pygments ]; diff --git a/pkgs/development/tools/detekt/default.nix b/pkgs/development/tools/detekt/default.nix index 091fef5647562..ff643693daec0 100644 --- a/pkgs/development/tools/detekt/default.nix +++ b/pkgs/development/tools/detekt/default.nix @@ -1,13 +1,13 @@ { detekt, lib, stdenv, fetchurl, makeWrapper, jre_headless, testers }: stdenv.mkDerivation rec { pname = "detekt"; - version = "1.23.4"; + version = "1.23.5"; jarfilename = "${pname}-${version}-executable.jar"; src = fetchurl { url = "https://github.com/detekt/detekt/releases/download/v${version}/detekt-cli-${version}-all.jar"; - sha256 = "sha256-Kx6I0pe7Qz4JMZeBRVdka6wfoL9uQgZjCUGInZJeAOA="; + sha256 = "sha256-Pz+MaZimJMCjtGPy7coi6SSE7IdAQhtp2u8YV4s7KLY="; }; dontUnpack = true; diff --git a/pkgs/development/tools/devbox/default.nix b/pkgs/development/tools/devbox/default.nix index 8bfef1ff6303c..e75c73ec9fa8d 100644 --- a/pkgs/development/tools/devbox/default.nix +++ b/pkgs/development/tools/devbox/default.nix @@ -5,13 +5,13 @@ }: buildGoModule rec { pname = "devbox"; - version = "0.8.5"; + version = "0.9.0"; src = fetchFromGitHub { owner = "jetpack-io"; repo = pname; rev = version; - hash = "sha256-Vgke4CTVU5KW7iDyzk6P1ab5nOyICblvJtUQTISc2jg="; + hash = "sha256-cM4PiNbfE2sEQHzklBgsJdN/iVK0nT9iZ1F/Cb5tLtM="; }; ldflags = [ @@ -23,7 +23,7 @@ buildGoModule rec { # integration tests want file system access doCheck = false; - vendorHash = "sha256-rP3vktCfmUeZhc0DaU2osVryNabsnaWWyfFYFy7W1pc="; + vendorHash = "sha256-8G1JX4vdpDAicx6A9Butl8XTjszlHMbh34pJVQyzEs4="; nativeBuildInputs = [ installShellFiles ]; diff --git a/pkgs/development/tools/devpi-client/default.nix b/pkgs/development/tools/devpi-client/default.nix index 9a7c8dcccd973..a481bf8804fef 100644 --- a/pkgs/development/tools/devpi-client/default.nix +++ b/pkgs/development/tools/devpi-client/default.nix @@ -8,12 +8,12 @@ python3.pkgs.buildPythonApplication rec { pname = "devpi-client"; - version = "7.0.0"; + version = "7.0.2"; pyproject = true; src = fetchPypi { inherit pname version; - hash = "sha256-AI/GNubb7+nwz/vM6v/JoUtWup6rBJieKXtFQzrdPkE="; + hash = "sha256-oOX5Z8WXgNJYsgXqHE2CsXdDnA3XmDF6axD1D318bPQ="; }; postPatch = '' diff --git a/pkgs/development/tools/devpi-server/default.nix b/pkgs/development/tools/devpi-server/default.nix index 00511c83801d3..0b64f8c615af7 100644 --- a/pkgs/development/tools/devpi-server/default.nix +++ b/pkgs/development/tools/devpi-server/default.nix @@ -20,6 +20,8 @@ , strictyaml , waitress , webtest +, testers +, devpi-server }: @@ -64,6 +66,7 @@ buildPythonApplication rec { setuptools strictyaml waitress + py ] ++ passlib.optional-dependencies.argon2; nativeCheckInputs = [ @@ -103,6 +106,10 @@ buildPythonApplication rec { "devpi_server" ]; + passthru.tests.version = testers.testVersion { + package = devpi-server; + }; + meta = with lib;{ homepage = "http://doc.devpi.net"; description = "Github-style pypi index server and packaging meta tool"; diff --git a/pkgs/development/tools/distgen/default.nix b/pkgs/development/tools/distgen/default.nix index 0a52eecc25792..083bc3ed854c4 100644 --- a/pkgs/development/tools/distgen/default.nix +++ b/pkgs/development/tools/distgen/default.nix @@ -2,11 +2,11 @@ python3.pkgs.buildPythonApplication rec { pname = "distgen"; - version = "1.5"; + version = "1.17"; src = fetchPypi { inherit pname version; - sha256 = "08f9rw5irgv0gw7jizk5f9csn0yhrdnb84k40px1zbypsylvr5c5"; + sha256 = "sha256-Md6R1thUtPQ7BFZsWmTDuNdD7UHMMFlEVksIJZAyjk4="; }; nativeCheckInputs = with python3.pkgs; [ diff --git a/pkgs/development/tools/dive/default.nix b/pkgs/development/tools/dive/default.nix index d7ce887c28195..6981e83f7086c 100644 --- a/pkgs/development/tools/dive/default.nix +++ b/pkgs/development/tools/dive/default.nix @@ -11,25 +11,16 @@ buildGoModule rec { pname = "dive"; - version = "0.11.0"; + version = "0.12.0"; src = fetchFromGitHub { owner = "wagoodman"; repo = "dive"; rev = "v${version}"; - hash = "sha256-9REthyb+bzsb7NBXkU9XyUZJFQHHrV1cG4//lTLgTgw="; + hash = "sha256-CuVRFybsn7PVPgz3fz5ghpjOEOsTYTv6uUAgRgFewFw="; }; - patches = [ - # fixes: unsafe.Slice requires go1.17 or later (-lang was set to go1.16; check go.mod) - # https://github.com/wagoodman/dive/pull/461 - (fetchpatch { - url = "https://github.com/wagoodman/dive/commit/555555d777f961ad0a2d1bb843e87f434d731dba.patch"; - hash = "sha256-tPSgvENiVgrlQSkT7LbQPRYhkkaYQeWRJ0P4bA3XOiI="; - }) - ]; - - vendorHash = "sha256-6KIbTrkvdugsUKdFBqtPUFzs/6h2xslLFpr6S2nSBiY="; + vendorHash = "sha256-uzzawa/Doo6j/Fh9dJMzGKbpp24UTLAo9VGmuQ80IZE="; nativeBuildInputs = [ pkg-config ]; @@ -40,6 +31,7 @@ buildGoModule rec { meta = with lib; { description = "A tool for exploring each layer in a docker image"; homepage = "https://github.com/wagoodman/dive"; + changelog = "https://github.com/wagoodman/dive/releases/tag/v${version}"; license = licenses.mit; maintainers = with maintainers; [ marsam SuperSandro2000 ]; }; diff --git a/pkgs/development/tools/djhtml/default.nix b/pkgs/development/tools/djhtml/default.nix index a014c9722f2e6..4e4342f36fb67 100644 --- a/pkgs/development/tools/djhtml/default.nix +++ b/pkgs/development/tools/djhtml/default.nix @@ -5,7 +5,7 @@ }: buildPythonApplication rec { pname = "djhtml"; - version = "3.0.5"; + version = "3.0.6"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -13,8 +13,8 @@ buildPythonApplication rec { src = fetchFromGitHub { owner = "rtts"; repo = pname; - rev = version; - hash = "sha256-m13lw1x+URAYuDc0gXRIxfRnd6kQxeAuLDqYXeOgQE0="; + rev = "refs/tags/${version}"; + hash = "sha256-3bviLyTLpHcAUWAaAmNZukWBDwFs8yFOAxl2bSk9GNY="; }; pythonImportsCheck = [ "djhtml" ]; diff --git a/pkgs/development/tools/djlint/default.nix b/pkgs/development/tools/djlint/default.nix index 27d66f6dd42cb..cbba45b686b90 100644 --- a/pkgs/development/tools/djlint/default.nix +++ b/pkgs/development/tools/djlint/default.nix @@ -11,12 +11,17 @@ python3.pkgs.buildPythonApplication rec { src = fetchFromGitHub { owner = "Riverside-Healthcare"; repo = "djlint"; - rev = "v${version}"; + rev = "refs/tags/v${version}"; hash = "sha256-p9RIzX9zoZxBrhiNaIeCX9OgfQm/lXNwYsh6IcsnIVk="; }; - nativeBuildInputs = [ - python3.pkgs.poetry-core + nativeBuildInputs = with python3.pkgs; [ + poetry-core + pythonRelaxDepsHook + ]; + + pythonRelaxDeps = [ + "pathspec" ]; propagatedBuildInputs = with python3.pkgs; [ diff --git a/pkgs/development/tools/dockle/default.nix b/pkgs/development/tools/dockle/default.nix index b3dad03301ee1..a1f5d433646cc 100644 --- a/pkgs/development/tools/dockle/default.nix +++ b/pkgs/development/tools/dockle/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "dockle"; - version = "0.4.13"; + version = "0.4.14"; src = fetchFromGitHub { owner = "goodwithtech"; repo = pname; rev = "v${version}"; - hash = "sha256-45VRA3IBGlbMoRbAh6F+KuAM5CIlU00ZzG7N62aikGE="; + hash = "sha256-ZAk51juPFSaDQYfzsf7HXigL4aIk8V+tGA9lZqHBOsY="; }; - vendorHash = "sha256-t66SRFDJT32dwRFqborir+mSQJlpekbicDNhmkeqork="; + vendorHash = "sha256-+AtvnplvPWkUwmxfB7rjYcLTQibQsObFT1QRR0FXAe0="; nativeBuildInputs = [ pkg-config ]; buildInputs = [ btrfs-progs lvm2 ]; diff --git a/pkgs/development/tools/doctl/default.nix b/pkgs/development/tools/doctl/default.nix index 96a3208126762..d82c24979dfb5 100644 --- a/pkgs/development/tools/doctl/default.nix +++ b/pkgs/development/tools/doctl/default.nix @@ -2,7 +2,7 @@ buildGoModule rec { pname = "doctl"; - version = "1.102.0"; + version = "1.104.0"; vendorHash = null; @@ -31,7 +31,7 @@ buildGoModule rec { owner = "digitalocean"; repo = "doctl"; rev = "v${version}"; - sha256 = "sha256-TCIdrdCXFaJetP4GgrIn7vy4frMzCTmUsWPVN5pUTD4="; + sha256 = "sha256-Ww2tQi6ldRP142AIhLpwWNH4l9DCvUrMSZXCzPrxkxg="; }; meta = with lib; { diff --git a/pkgs/development/tools/documentation/antora/default.nix b/pkgs/development/tools/documentation/antora/default.nix index 9a68837714af2..6ac43313e962f 100644 --- a/pkgs/development/tools/documentation/antora/default.nix +++ b/pkgs/development/tools/documentation/antora/default.nix @@ -2,16 +2,16 @@ buildNpmPackage rec { pname = "antora"; - version = "3.1.5"; + version = "3.1.7"; src = fetchFromGitLab { owner = pname; repo = pname; rev = "v${version}"; - hash = "sha256-PCtYV5jPGFja26Dv4kXiaw8ITWR4xzVP/9hc45UWHeg="; + hash = "sha256-uGXXp6boS5yYsInSmkI9S0Tn85QGVp/5Fsh1u3G4oPk="; }; - npmDepsHash = "sha256-//426AFUoJy7phqbbLdwkJvhOzcYsIumSaeAKefFsf4="; + npmDepsHash = "sha256-oWLRAuvWDk7w18qlDH14EE4elX5nhLKHSQANa/kXKvw="; # This is to stop tests from being ran, as some of them fail due to trying to query remote repositories postPatch = '' diff --git a/pkgs/development/tools/documentation/doxygen/default.nix b/pkgs/development/tools/documentation/doxygen/default.nix index 3b1a1fa0aa1fb..ddf27b35dbd05 100644 --- a/pkgs/development/tools/documentation/doxygen/default.nix +++ b/pkgs/development/tools/documentation/doxygen/default.nix @@ -8,18 +8,18 @@ , qt5 , CoreServices , libiconv -, withSqlite ? true, sqlite +, sqlite }: stdenv.mkDerivation rec { pname = "doxygen"; - version = "1.9.8"; + version = "1.10.0"; src = fetchFromGitHub { owner = "doxygen"; repo = "doxygen"; rev = "Release_${lib.replaceStrings [ "." ] [ "_" ] version}"; - sha256 = "sha256-uQ1Fl2kmY7qmzy34NOmZCgPxVGwmqRqDvV6yEab5P4w="; + sha256 = "sha256-FPI5ICdn9Tne/g9SP6jAQS813AAyoDNooDR/Hyvq6R4="; }; nativeBuildInputs = [ @@ -29,14 +29,14 @@ stdenv.mkDerivation rec { bison ]; - buildInputs = [ libiconv ] - ++ lib.optionals withSqlite [ sqlite ] + buildInputs = [ libiconv sqlite ] ++ lib.optionals (qt5 != null) (with qt5; [ qtbase wrapQtAppsHook ]) ++ lib.optionals stdenv.isDarwin [ CoreServices ]; - cmakeFlags = [ "-DICONV_INCLUDE_DIR=${libiconv}/include" ] - ++ lib.optional withSqlite "-Duse_sqlite3=ON" - ++ lib.optional (qt5 != null) "-Dbuild_wizard=YES"; + cmakeFlags = [ + "-DICONV_INCLUDE_DIR=${libiconv}/include" + "-Duse_sys_sqlite3=ON" + ] ++ lib.optional (qt5 != null) "-Dbuild_wizard=YES"; env.NIX_CFLAGS_COMPILE = lib.optionalString stdenv.isDarwin "-mmacosx-version-min=10.9"; diff --git a/pkgs/development/tools/dtools/default.nix b/pkgs/development/tools/dtools/default.nix index 5b525f3067f21..de4038fd346d4 100644 --- a/pkgs/development/tools/dtools/default.nix +++ b/pkgs/development/tools/dtools/default.nix @@ -2,7 +2,7 @@ stdenv.mkDerivation rec { pname = "dtools"; - version = "2.106.0"; + version = "2.106.1"; src = fetchFromGitHub { owner = "dlang"; diff --git a/pkgs/development/tools/earthly/default.nix b/pkgs/development/tools/earthly/default.nix index fee62a7fd981b..6bc18da18258d 100644 --- a/pkgs/development/tools/earthly/default.nix +++ b/pkgs/development/tools/earthly/default.nix @@ -1,17 +1,17 @@ -{ lib, buildGoModule, fetchFromGitHub, stdenv }: +{ lib, buildGoModule, fetchFromGitHub, stdenv, testers, earthly }: buildGoModule rec { pname = "earthly"; - version = "0.7.23"; + version = "0.8.3"; src = fetchFromGitHub { owner = "earthly"; repo = "earthly"; rev = "v${version}"; - hash = "sha256-YXfW+O7u97x8YoWLNFSU/OIB9DGsqWEIwUpfvnXySMg="; + hash = "sha256-xjehcMm7lW0t65j0hQxbqmMWt1uuK8I4/MB7mjr+axw="; }; - vendorHash = "sha256-Tr9clCUS7T0295Oxe6wvQN0oXCg1G48rzGXBL3R9TYU="; + vendorHash = "sha256-NNOUo2X2rwvKRP/zgmTexyXFDNT/LO/kE4HiKwFWQUw="; subPackages = [ "cmd/earthly" "cmd/debugger" ]; CGO_ENABLED = 0; @@ -39,6 +39,13 @@ buildGoModule rec { mv $out/bin/debugger $out/bin/earthly-debugger ''; + passthru = { + tests.version = testers.testVersion { + package = earthly; + version = "v${version}"; + }; + }; + meta = with lib; { description = "Build automation for the container era"; homepage = "https://earthly.dev/"; diff --git a/pkgs/development/tools/eask/default.nix b/pkgs/development/tools/eask/default.nix index 0c55933f5b212..a130ad9e82c16 100644 --- a/pkgs/development/tools/eask/default.nix +++ b/pkgs/development/tools/eask/default.nix @@ -5,16 +5,16 @@ buildNpmPackage rec { pname = "eask"; - version = "0.9.2"; + version = "0.9.3"; src = fetchFromGitHub { owner = "emacs-eask"; repo = "cli"; rev = version; - hash = "sha256-LUN2gnvdToVi6NOF5gKXVPG0Al1Y/gI66o8dI8bTIgM="; + hash = "sha256-MuNQyd4vpJ8Eu57TGPpXiHjwJfdo3FhMjPZYc0MmHRg="; }; - npmDepsHash = "sha256-YNgLEe7voCFspOBefXYJ7NtAtbTc0mRmFUN0856j6KM="; + npmDepsHash = "sha256-t/DgLItOeD/tUofRlf9mpZg79pC/ml2ReIyp62izn6Y="; dontBuild = true; diff --git a/pkgs/development/tools/efm-langserver/default.nix b/pkgs/development/tools/efm-langserver/default.nix index 0c7ff5382f422..5bed978959cd8 100644 --- a/pkgs/development/tools/efm-langserver/default.nix +++ b/pkgs/development/tools/efm-langserver/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "efm-langserver"; - version = "0.0.49"; + version = "0.0.50"; src = fetchFromGitHub { owner = "mattn"; repo = "efm-langserver"; rev = "v${version}"; - sha256 = "sha256-sHdULnaLHe4FqP631c4ITNDn62nGJgAIIvO3C4kY3jI="; + sha256 = "sha256-3WnMEkDa1boExyOg30wiFqs1Nw/zMtBqoUmtjluTQ0Y="; }; vendorHash = "sha256-ZChHQ0Bcu9sVHvhdrmTfLryRwsFQNQSFDOKRu0keUIo="; diff --git a/pkgs/development/tools/electron/info.json b/pkgs/development/tools/electron/info.json index f0ec96250977b..909e83468d650 100644 --- a/pkgs/development/tools/electron/info.json +++ b/pkgs/development/tools/electron/info.json @@ -3,16 +3,16 @@ "deps": { "src/electron": { "fetcher": "fetchFromGitHub", - "hash": "sha256-QY0JaQVI60WAzWNWDXZRejFODA+p0LMjYvk2CMF8czs=", + "hash": "sha256-NncDuvceqh2QU7EeHaeyIBEp1kXpPLKkhXlqfqaRmGM=", "owner": "electron", "repo": "electron", - "rev": "v28.1.3" + "rev": "v28.1.4" }, "src": { "fetcher": "fetchFromGitiles", - "hash": "sha256-7tGDiHumIfb5ST8tCNUCN7pjlcU+R13j68vYKTu0wiQ=", + "hash": "sha256-4ET4+Yd0VwKS/Ze/KO3yhehAdmjCSswaoWmMTo+8KK8=", "url": "https://chromium.googlesource.com/chromium/src.git", - "rev": "120.0.6099.199", + "rev": "120.0.6099.216", "postFetch": "rm -r $out/third_party/blink/web_tests; rm -r $out/third_party/hunspell/tests; rm -r $out/content/test/data; rm -r $out/courgette/testdata; rm -r $out/extensions/test/data; rm -r $out/media/test/data; " }, "src/third_party/clang-format/script": { @@ -873,12 +873,12 @@ "rev": "78d3966b3c331292ea29ec38661b25df0a245948" } }, - "version": "28.1.3", + "version": "28.1.4", "modules": "119", - "chrome": "120.0.6099.199", + "chrome": "120.0.6099.216", "node": "18.18.2", "chromium": { - "version": "120.0.6099.199", + "version": "120.0.6099.216", "deps": { "gn": { "version": "2023-10-23", @@ -895,10 +895,10 @@ "deps": { "src/electron": { "fetcher": "fetchFromGitHub", - "hash": "sha256-C9Oj6xuPFnj5Wh+VeeXc9AJ3Pgxq+SGn624OFWseO4M=", + "hash": "sha256-UHrY5DOwkkVS7j5WgY4vTWIH747jX/gMM3AfnxHc+do=", "owner": "electron", "repo": "electron", - "rev": "v27.2.2" + "rev": "v27.2.3" }, "src": { "fetcher": "fetchFromGitiles", @@ -1765,7 +1765,7 @@ "rev": "78d3966b3c331292ea29ec38661b25df0a245948" } }, - "version": "27.2.2", + "version": "27.2.3", "modules": "118", "chrome": "118.0.5993.159", "node": "18.17.1", @@ -1780,17 +1780,17 @@ } } }, - "chromium_npm_hash": "sha256-5cjqpYB45nw2gop54VP+tL7/0w63nQGfQ4x6a6KS7XQ=", - "electron_yarn_hash": "1rxijv3fspjfan7mmw4cmxcb231ny7gn72yzsdnqs0225alrjac0" + "electron_yarn_hash": "1rxijv3fspjfan7mmw4cmxcb231ny7gn72yzsdnqs0225alrjac0", + "chromium_npm_hash": "sha256-5cjqpYB45nw2gop54VP+tL7/0w63nQGfQ4x6a6KS7XQ=" }, "26": { "deps": { "src/electron": { "fetcher": "fetchFromGitHub", - "hash": "sha256-KTvbe8reOTqzqXoPHBQY24mxvUSokGh8JlxCJTdNxbc=", + "hash": "sha256-Y9SiwDHCkHi+s5zYWPtFPhxjpCQMrpZP+IBi/xYZFVo=", "owner": "electron", "repo": "electron", - "rev": "v26.6.5" + "rev": "v26.6.6" }, "src": { "fetcher": "fetchFromGitiles", @@ -2609,7 +2609,7 @@ "rev": "78d3966b3c331292ea29ec38661b25df0a245948" } }, - "version": "26.6.5", + "version": "26.6.6", "modules": "116", "chrome": "116.0.5845.228", "node": "18.16.1", diff --git a/pkgs/development/tools/eliot-tree/default.nix b/pkgs/development/tools/eliot-tree/default.nix index 9ef8dcad374dc..21dfccd33e421 100644 --- a/pkgs/development/tools/eliot-tree/default.nix +++ b/pkgs/development/tools/eliot-tree/default.nix @@ -2,11 +2,11 @@ python3Packages.buildPythonApplication rec { pname = "eliot-tree"; - version = "19.0.1"; + version = "21.0.0"; src = fetchPypi { inherit pname version; - sha256 = "18gvijsm0vh3x83mv8dd80c3mpm80r7i111qsg4y7rj4i590phma"; + sha256 = "sha256-hTl+r+QJPPQ7ss73lty3Wm7DLy2SKGmmgIuJx38ilO8="; }; nativeCheckInputs = with python3Packages; [ diff --git a/pkgs/development/tools/esbuild/default.nix b/pkgs/development/tools/esbuild/default.nix index 7d19b59638e5e..75f103dec6cb7 100644 --- a/pkgs/development/tools/esbuild/default.nix +++ b/pkgs/development/tools/esbuild/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "esbuild"; - version = "0.19.11"; + version = "0.20.0"; src = fetchFromGitHub { owner = "evanw"; repo = "esbuild"; rev = "v${version}"; - hash = "sha256-NUwjzOpHA0Ijuh0E69KXx8YVS5GTnKmob9HepqugbIU="; + hash = "sha256-CJUBjDQAXSUFe37zYGbX6geeEk9goZ/aOalWDHPIZis="; }; vendorHash = "sha256-+BfxCyg0KkDQpHt/wycy/8CTG6YBA/VJvJFhhzUnSiQ="; diff --git a/pkgs/development/tools/espup/default.nix b/pkgs/development/tools/espup/default.nix index 0e47b8e55658d..145f681f1cbc1 100644 --- a/pkgs/development/tools/espup/default.nix +++ b/pkgs/development/tools/espup/default.nix @@ -15,16 +15,16 @@ rustPlatform.buildRustPackage rec { pname = "espup"; - version = "0.10.0"; + version = "0.11.0"; src = fetchFromGitHub { owner = "esp-rs"; repo = "espup"; rev = "v${version}"; - hash = "sha256-MLr6Fh1KAvGry/fToJuLYOf36MKW2i5W4XiMIEeb52M="; + hash = "sha256-BW71yFX4jfx90KHdynkGSqWD4diyjEBQfdBNquVdDDI="; }; - cargoHash = "sha256-AIM08tvt1w+TJgjxCxU+zN9eDBvgCv15WM+vQGbTF18="; + cargoHash = "sha256-iUVOU1P996hLC1rR/wWtsDBkKSB0rD7PPh6ZsQkHq3I="; nativeBuildInputs = [ pkg-config diff --git a/pkgs/development/tools/extism-cli/default.nix b/pkgs/development/tools/extism-cli/default.nix index 3ac24cb22936f..67046d96e9443 100644 --- a/pkgs/development/tools/extism-cli/default.nix +++ b/pkgs/development/tools/extism-cli/default.nix @@ -7,18 +7,18 @@ buildGoModule rec { pname = "extism-cli"; - version = "0.3.9"; + version = "1.0.3"; src = fetchFromGitHub { owner = "extism"; repo = "cli"; rev = "refs/tags/v${version}"; - hash = "sha256-t53VJOc1umIwPyS6hkAm+u9KsKiYas4iRrlraofJSEY="; + hash = "sha256-szs5tLjGCavHerQQi0Abla0kaHYQ/xN0O36Wrc1MG4Y="; }; modRoot = "./extism"; - vendorHash = "sha256-Ukbg2CG2qeLmM9HijKXZY/fEY2QfJXTyaTIsEDT5W6E="; + vendorHash = "sha256-IRqn4XmFA6vyjtgTaxYh7ndHkQYuKC1eHKNoGC7Hh+U="; nativeBuildInputs = [ installShellFiles ]; diff --git a/pkgs/development/tools/faas-cli/default.nix b/pkgs/development/tools/faas-cli/default.nix index 8f42ed7250dc2..9eaadd43cedb6 100644 --- a/pkgs/development/tools/faas-cli/default.nix +++ b/pkgs/development/tools/faas-cli/default.nix @@ -18,13 +18,13 @@ let in buildGoModule rec { pname = "faas-cli"; - version = "0.16.21"; + version = "0.16.23"; src = fetchFromGitHub { owner = "openfaas"; repo = "faas-cli"; rev = version; - sha256 = "sha256-1zdxxd27XXSDcOhQi/um7jQlLZ3x+T09N1p1JJ8qzkk="; + sha256 = "sha256-QbMwokFHaISvsNuHy/Do90bvXtwaJmie/hDLybuy2qk="; }; vendorHash = null; diff --git a/pkgs/development/tools/fable/default.nix b/pkgs/development/tools/fable/default.nix index 93757b3cd8e2d..10447afe20f39 100644 --- a/pkgs/development/tools/fable/default.nix +++ b/pkgs/development/tools/fable/default.nix @@ -2,9 +2,9 @@ buildDotnetGlobalTool { pname = "fable"; - version = "4.9.0"; + version = "4.11.0"; - nugetSha256 = "sha256-BB3jCsIz6Y9LjBhoEBzYLXttwLOBb4n1EpqJwImjo9A="; + nugetSha256 = "sha256-AOsCthGk4YiTcKjIdCE1nnADWLqfd80vPFMmo9YLGUA="; passthru.updateScript = ./update.sh; meta = with lib; { diff --git a/pkgs/development/tools/fac/default.nix b/pkgs/development/tools/fac/default.nix deleted file mode 100644 index c50fd834e031d..0000000000000 --- a/pkgs/development/tools/fac/default.nix +++ /dev/null @@ -1,35 +0,0 @@ -{ lib, buildGoPackage, fetchFromGitHub, makeWrapper, git }: - -buildGoPackage rec { - pname = "fac"; - version = "2.0.0"; - - goPackagePath = "github.com/mkchoi212/fac"; - - src = fetchFromGitHub { - owner = "mkchoi212"; - repo = "fac"; - rev = "v${version}"; - sha256 = "054bbiw0slz9szy3ap2sh5dy97w3g7ms27rd3ww3i1zdhvnggwpc"; - }; - - goDeps = ./deps.nix; - - nativeBuildInputs = [ makeWrapper ]; - - postInstall = '' - wrapProgram $out/bin/fac \ - --prefix PATH : ${git}/bin - - # Install man page, not installed by default - install -D go/src/${goPackagePath}/assets/doc/fac.1 $out/share/man/man1/fac.1 - ''; - - meta = with lib; { - description = "CUI for fixing git conflicts"; - inherit (src.meta) homepage; - license = licenses.mit; - maintainers = with maintainers; [ dtzWill ]; - }; -} - diff --git a/pkgs/development/tools/fac/deps.nix b/pkgs/development/tools/fac/deps.nix deleted file mode 100644 index 8545bae7e22d5..0000000000000 --- a/pkgs/development/tools/fac/deps.nix +++ /dev/null @@ -1,66 +0,0 @@ -# file generated from Gopkg.lock using dep2nix (https://github.com/nixcloud/dep2nix) -[ - { - goPackagePath = "github.com/alecthomas/chroma"; - fetch = { - type = "git"; - url = "https://github.com/alecthomas/chroma"; - rev = "0c0b382eca61a71c1eb4cb4dea2bc78aa4939d96"; - sha256 = "0chpzs542s366vv01bfhrajdrbhmrvc3gi8jhpw3xgz6wfkivcp4"; - }; - } - { - goPackagePath = "github.com/danwakefield/fnmatch"; - fetch = { - type = "git"; - url = "https://github.com/danwakefield/fnmatch"; - rev = "cbb64ac3d964b81592e64f957ad53df015803288"; - sha256 = "0cbf511ppsa6hf59mdl7nbyn2b2n71y0bpkzbmfkdqjhanqh1lqz"; - }; - } - { - goPackagePath = "github.com/dlclark/regexp2"; - fetch = { - type = "git"; - url = "https://github.com/dlclark/regexp2"; - rev = "7632a260cbaf5e7594fc1544a503456ecd0827f1"; - sha256 = "0vhp5r0ywv9p1c74fm8xzclnwx2mg9f0764b3id7a9nwh0plisx2"; - }; - } - { - goPackagePath = "github.com/jroimartin/gocui"; - fetch = { - type = "git"; - url = "https://github.com/jroimartin/gocui"; - rev = "c055c87ae801372cd74a0839b972db4f7697ae5f"; - sha256 = "1b1cbjg925l1c5v3ls8amni9716190yzf847cqs9wjnj82z8qa47"; - }; - } - { - goPackagePath = "github.com/mattn/go-runewidth"; - fetch = { - type = "git"; - url = "https://github.com/mattn/go-runewidth"; - rev = "ce7b0b5c7b45a81508558cd1dba6bb1e4ddb51bb"; - sha256 = "0lc39b6xrxv7h3v3y1kgz49cgi5qxwlygs715aam6ba35m48yi7g"; - }; - } - { - goPackagePath = "github.com/nsf/termbox-go"; - fetch = { - type = "git"; - url = "https://github.com/nsf/termbox-go"; - rev = "5c94acc5e6eb520f1bcd183974e01171cc4c23b3"; - sha256 = "1fi8imdgwvlsgifw2qfl3ww0lsrgkfsimkzz7bnrq41nar78s0fw"; - }; - } - { - goPackagePath = "gopkg.in/yaml.v2"; - fetch = { - type = "git"; - url = "https://github.com/go-yaml/yaml"; - rev = "5420a8b6744d3b0345ab293f6fcba19c978f1183"; - sha256 = "0dwjrs2lp2gdlscs7bsrmyc5yf6mm4fvgw71bzr9mv2qrd2q73s1"; - }; - } -] diff --git a/pkgs/development/tools/fermyon-spin/default.nix b/pkgs/development/tools/fermyon-spin/default.nix index a0ba21d606744..e7e1783e621f5 100644 --- a/pkgs/development/tools/fermyon-spin/default.nix +++ b/pkgs/development/tools/fermyon-spin/default.nix @@ -17,20 +17,20 @@ let }.${system} or (throw "Unsupported system: ${system}"); packageHash = { - x86_64-linux = "sha256-Fp1h1X5UFOHLqgaAcXXl3oSioCMVLJLaOURHd3uu8sA="; - aarch64-linux = "sha256-F6/h98qZvzImuxPOMYr1cGWBjr1qWGvoYztvZzw2GRg="; - x86_64-darwin = "sha256-WegiHPHi9Qw4PPTEB2a9AdIgMlyOzzSpTRdJH43IEjM="; - aarch64-darwin = "sha256-BJER3Fp4AItqtLNYh6pH/tNB98H3iTARr3fKyTXGcP8="; + x86_64-linux = "sha256-i06Zp176zl7y8P32Hss64QkMc/+vXtkQy/tkOPSX3dc="; + aarch64-linux = "sha256-HEm3TaLeaws8G73CU9BmxeplQdeF9nQbBSnbctaVhqI="; + x86_64-darwin = "sha256-mlshpN/4Od4qrXiqIEYo7G84Dtb+tp2nK2VnrRG2rto="; + aarch64-darwin = "sha256-aJH/vOidj0vbkttGDgelaAC/dMYguQPLjxl+V3pOVzI="; }.${system} or (throw "Unsupported system: ${system}"); in stdenv.mkDerivation rec { pname = "fermyon-spin"; - version = "1.2.1"; + version = "2.1.0"; src = fetchzip { url = "https://github.com/fermyon/spin/releases/download/v${version}/spin-v${version}-${platform}.tar.gz"; stripRoot = false; - sha256 = packageHash; + hash = packageHash; }; nativeBuildInputs = lib.optionals stdenv.isLinux [ diff --git a/pkgs/development/tools/firebase-tools/default.nix b/pkgs/development/tools/firebase-tools/default.nix index 35789463f5bb1..895b018f50f76 100644 --- a/pkgs/development/tools/firebase-tools/default.nix +++ b/pkgs/development/tools/firebase-tools/default.nix @@ -8,16 +8,16 @@ buildNpmPackage rec { pname = "firebase-tools"; - version = "13.0.3"; + version = "13.1.0"; src = fetchFromGitHub { owner = "firebase"; repo = "firebase-tools"; rev = "v${version}"; - hash = "sha256-kq7ZrTh6cbrVCEW2/APtcdLqn9hCKXIxZmGgvgpfG4U="; + hash = "sha256-S8biY6aOCvz//SLdqFkPLCfQn9CtrVxKgp9A/Z2vRHo="; }; - npmDepsHash = "sha256-VR+fpykY38JekzcBCK99qmiM3veuZ85BtGGTNf7TW5o="; + npmDepsHash = "sha256-SoRtQyGhKgaS1TK7ZmuIbNESQByQVJZkBUbvITiLF5w="; postPatch = '' ln -s npm-shrinkwrap.json package-lock.json diff --git a/pkgs/development/tools/fission/default.nix b/pkgs/development/tools/fission/default.nix index 7acd5007f722a..b1ac93a81ee9e 100644 --- a/pkgs/development/tools/fission/default.nix +++ b/pkgs/development/tools/fission/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "fission"; - version = "1.20.0"; + version = "1.20.1"; src = fetchFromGitHub { owner = "fission"; repo = "fission"; rev = "v${version}"; - hash = "sha256-6g0qJPH4NiA+8VhjvqamVfmb4LdofJ75GOMl/IFN5V4="; + hash = "sha256-RT4hBr7qxhhJM1REJFIE9En1Vu3ACvXav242PBYz8IQ="; }; - vendorHash = "sha256-MzMLatTGEnCgTlj6WYBRLbi6D5eSbA4CvqIXVbcvLCM="; + vendorHash = "sha256-hZmQxG4cw1Len3ZyGhWVTXB8N9fDRkgNDyF18/8dKuo="; ldflags = [ "-s" "-w" "-X info.Version=${version}" ]; diff --git a/pkgs/development/tools/fsautocomplete/default.nix b/pkgs/development/tools/fsautocomplete/default.nix index 3ac0406f19e89..b4e9622c259be 100644 --- a/pkgs/development/tools/fsautocomplete/default.nix +++ b/pkgs/development/tools/fsautocomplete/default.nix @@ -5,13 +5,13 @@ let in buildDotnetModule rec { pname = "fsautocomplete"; - version = "0.68.0"; + version = "0.69.0"; src = fetchFromGitHub { owner = "fsharp"; repo = "FsAutoComplete"; rev = "v${version}"; - sha256 = "sha256-wAPTJXD2CxZQA2EG4rQCM9v3dIu6hn3q23K7Vv9wkAk="; + hash = "sha256-o0aR4yRzRb3y8vARuhP7JnBQ72XBX0whfpC51b2cqF0="; }; nugetDeps = ./deps.nix; diff --git a/pkgs/development/tools/fsautocomplete/deps.nix b/pkgs/development/tools/fsautocomplete/deps.nix index b807457ad01e0..969195d3ed825 100644 --- a/pkgs/development/tools/fsautocomplete/deps.nix +++ b/pkgs/development/tools/fsautocomplete/deps.nix @@ -38,12 +38,14 @@ (fetchNuGet { pname = "Fake.IO.Zip"; version = "5.23.1"; sha256 = "0iac86jlxb5bwgiich3zzvr7bz5aw8xq53ly263mwxhv9lrsd815"; }) (fetchNuGet { pname = "Fake.Net.Http"; version = "5.23.1"; sha256 = "1g0dpxi5b78qh7myz09pmjxzb0iblj3rqx5mpaammbppbbazvzdk"; }) (fetchNuGet { pname = "Fake.Tools.Git"; version = "5.23.1"; sha256 = "0cg1sbp7zl1d18cjhbs94ix8580hr6gyaxjw17q246lbaj9bfg8l"; }) - (fetchNuGet { pname = "fantomas"; version = "6.2.2"; sha256 = "1ln1czswz8njwn1wgsq0psh7dcw6smjcilqxg8978mq05ki7i4dg"; }) + (fetchNuGet { pname = "fantomas"; version = "6.2.3"; sha256 = "1x91w4sk402b6ah1y0r0c9rxwbbnjp4x4mr7x4n5zvjhiv97b282"; }) (fetchNuGet { pname = "Fantomas.Client"; version = "0.9.0"; sha256 = "1zixwk61fyk7y9q6f8266kwxi6byr8fmyp1lf57qhbbvhq2waj9d"; }) (fetchNuGet { pname = "Fantomas.Core"; version = "6.2.0"; sha256 = "07yl2hr06zk1nl66scm24di3nf1zbrnd6329prwirnv370rz4q92"; }) (fetchNuGet { pname = "Fantomas.FCS"; version = "6.2.0"; sha256 = "1hhsa7hbxsm2d8ap4sqzwlzjmf4wsgg74i731rprr0nshjvd8ic7"; }) (fetchNuGet { pname = "FParsec"; version = "1.1.1"; sha256 = "01s3zrxl9kfx0264wy0m555pfx0s0z165n4fvpgx63jlqwbd8m04"; }) - (fetchNuGet { pname = "FSharp.Analyzers.SDK"; version = "0.11.0"; sha256 = "0djgbxnygmpdkrw923z2vgirs5kamrvf94ls7pvnk43c52xlb0pf"; }) + (fetchNuGet { pname = "fsharp-analyzers"; version = "0.23.0"; sha256 = "115dqscxx02dss9s1shl6c1x6zc2dgrk9w8bj48cyjnwm79icqq9"; }) + (fetchNuGet { pname = "FSharp.Analyzers.Build"; version = "0.3.0"; sha256 = "1c9ijc9lvyw4lfnd3m9260c8lwnh6ca91zslr29dpn525z9zgdif"; }) + (fetchNuGet { pname = "FSharp.Analyzers.SDK"; version = "0.23.0"; sha256 = "0q4v03wkwfaf3hacy6jy0lyvmjkrsx5a9p000hx7bw5997vqzx8f"; }) (fetchNuGet { pname = "FSharp.Compiler.Service"; version = "43.8.100"; sha256 = "0lk8pqasbxkqp37fsnnidw8556l1k6s8w9qhq51w8zfnp7nw1xwm"; }) (fetchNuGet { pname = "FSharp.Control.AsyncSeq"; version = "3.2.1"; sha256 = "02c8d8snd529rrcj6lsmab3wdq2sjh90j8sanx50ck9acfn9jd3v"; }) (fetchNuGet { pname = "FSharp.Control.Reactive"; version = "5.0.5"; sha256 = "0ahvd3s5wfv610ks3b00ya5r71cqm34ap8ywx0pyrzhlsbk1ybqg"; }) @@ -68,6 +70,7 @@ (fetchNuGet { pname = "Iced"; version = "1.17.0"; sha256 = "1999xavgpy2h83rh4indiq5mx5l509swqdi1raxj3ab6zvk49zpb"; }) (fetchNuGet { pname = "IcedTasks"; version = "0.9.2"; sha256 = "1i4sg398qvxyrprca9jssn4lccwn67zndbg1a3a37cmsms5rlbvj"; }) (fetchNuGet { pname = "ICSharpCode.Decompiler"; version = "7.2.1.6856"; sha256 = "19z68rgzl93lh1h8anbgzw119mhvcgr9nh5q2nxk6qihl2mx97ba"; }) + (fetchNuGet { pname = "Ionide.Analyzers"; version = "0.7.0"; sha256 = "10s4wznblcdazrvghf64y59j1w4bvwar8iznjl0rncbka09ba4q5"; }) (fetchNuGet { pname = "Ionide.KeepAChangelog.Tasks"; version = "0.1.8"; sha256 = 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version = "17.2.0"; sha256 = "09hs74nr0kv83wc1way9x7vq3nmxbr2s4vdy99hx78kj25pylcr7"; }) @@ -121,12 +124,14 @@ (fetchNuGet { pname = "Microsoft.NET.StringTools"; version = "17.4.0"; sha256 = "1smx30nq22plrn2mw4wb5vfgxk6hyx12b60c4wabmpnr81lq3nzv"; }) (fetchNuGet { pname = "Microsoft.NET.StringTools"; version = "17.6.3"; sha256 = "0g5jdg0jp844a2ygwlm04igsxkrihqcq2rpmfx722nrv3vrk0r0z"; }) (fetchNuGet { pname = "Microsoft.NET.Test.Sdk"; version = "17.4.1"; sha256 = "02p1j9fncd4fb2hyp51kw49d0dz30vvazhzk24c9f5ccc00ijpra"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Host.linux-arm64"; version = "6.0.25"; sha256 = "052388yjivzkfllkss0nljbzmjx787jqdjsbb6ls855sp6wh9xfd"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Host.linux-x64"; version = "6.0.25"; sha256 = "103xy6kncjwbbchfnpqvsjpjy92x3dralcg9pw939jp0dwggwarz"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Ref"; version = "6.0.25"; sha256 = "0jfhmfxpx1h4f3axgf60gc8d4cnlvbb853400kag6nk0875hr0x1"; }) - (fetchNuGet { pname = 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"4.3.0"; sha256 = "134z3v9abw3a6jsw17xl3f6hqjpak5l682k2vz39spj4kmydg6k7"; }) (fetchNuGet { pname = "System.Threading.Tasks.Dataflow"; version = "6.0.0"; sha256 = "1b4vyjdir9kdkiv2fqqm4f76h0df68k8gcd7jb2b38zgr2vpnk3c"; }) (fetchNuGet { pname = "System.Threading.Tasks.Dataflow"; version = "7.0.0"; sha256 = "0ham9l8xrmlq2qwin53n82iz1wanci2h695i3cq83jcw4n28qdr9"; }) (fetchNuGet { pname = "System.Threading.Tasks.Extensions"; version = "4.5.4"; sha256 = "0y6ncasgfcgnjrhynaf0lwpkpkmv4a07sswwkwbwb5h7riisj153"; }) diff --git a/pkgs/development/tools/gauge/default.nix b/pkgs/development/tools/gauge/default.nix index c95c333657328..ae575baf19b05 100644 --- a/pkgs/development/tools/gauge/default.nix +++ b/pkgs/development/tools/gauge/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "gauge"; - version = "1.5.6"; + version = "1.6.1"; src = fetchFromGitHub { owner = "getgauge"; repo = "gauge"; rev = "v${version}"; - hash = "sha256-XWMv3H/NcEnX9+kCU6gzyrhpCtMWV3I+ZQ9Ia4XFpgY="; + hash = "sha256-dgSrjSAO0MwVML07gIqI9hIgRu+Pgv2jZOItSFd0DVU="; }; - vendorHash = "sha256-dTPKdDEK3xdvKUqI4fUDlUi0q0sMCw5Nfaj71IXit9M="; + vendorHash = "sha256-IGxETjZ2RCvhcA7XUQYbr2jf+9P/WReuAOLIpE3kyes="; excludedPackages = [ "build" "man" ]; diff --git a/pkgs/development/tools/ginkgo/default.nix b/pkgs/development/tools/ginkgo/default.nix index f53879dc6e7f7..a894a65271a34 100644 --- a/pkgs/development/tools/ginkgo/default.nix +++ b/pkgs/development/tools/ginkgo/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "ginkgo"; - version = "2.14.0"; + version = "2.15.0"; src = fetchFromGitHub { owner = "onsi"; repo = "ginkgo"; rev = "v${version}"; - sha256 = "sha256-enkWLhE6rsToL2bTElT+7ZMyQin0Go5FT8uDn79euKY="; + sha256 = "sha256-0Fwn62VORPmaufd7RqTkXjlXygXPVVixf8WwHgE57Lg="; }; vendorHash = "sha256-F3z6gowVkei782qaSIOh7Ymeq1SFGxBaHM9fTSPG6qI="; diff --git a/pkgs/development/tools/glamoroustoolkit/default.nix b/pkgs/development/tools/glamoroustoolkit/default.nix index a7e7bcb93ddf3..3a32bfdaddaa2 100644 --- a/pkgs/development/tools/glamoroustoolkit/default.nix +++ b/pkgs/development/tools/glamoroustoolkit/default.nix @@ -14,6 +14,7 @@ , libXi , libXrandr , libXrender +, libgit2 , libglvnd , libuuid , libxcb @@ -91,7 +92,8 @@ preFixup = let ln -s $out/lib/libcrypto.so $out/lib/libcrypto.so.1.1 ln -s $out/lib/libcairo.so $out/lib/libcairo.so.2 - ln -s $out/lib/libgit2.so $out/lib/libgit2.so.1.1 + rm $out/lib/libgit2.so + ln -s "${libgit2}/lib/libgit2.so" $out/lib/libgit2.so.1.1 ''; meta = { diff --git a/pkgs/development/tools/glslviewer/default.nix b/pkgs/development/tools/glslviewer/default.nix index 06016bec25b56..4be67a29e3999 100644 --- a/pkgs/development/tools/glslviewer/default.nix +++ b/pkgs/development/tools/glslviewer/default.nix @@ -17,6 +17,7 @@ stdenv.mkDerivation rec { postPatch = '' sed '1i#include <cstring>' -i src/tools/text.cpp # gcc12 + sed '8i#include <cstdint>' -i src/io/fs.cpp # gcc13 ''; nativeBuildInputs = [ pkg-config ensureNewerSourcesForZipFilesHook python3Packages.six ]; diff --git a/pkgs/development/tools/go-containerregistry/default.nix b/pkgs/development/tools/go-containerregistry/default.nix index 956ded6b6edb0..a6e0d9c47681d 100644 --- a/pkgs/development/tools/go-containerregistry/default.nix +++ b/pkgs/development/tools/go-containerregistry/default.nix @@ -4,13 +4,13 @@ let bins = [ "crane" "gcrane" ]; in buildGoModule rec { pname = "go-containerregistry"; - version = "0.17.0"; + version = "0.19.0"; src = fetchFromGitHub { owner = "google"; repo = pname; rev = "v${version}"; - sha256 = "sha256-spo8iRf3FqX7DyaTqIuiGOVrgv0PRqa05TQcanzB8FY="; + sha256 = "sha256-9sKJM1QnQcGF9d5oT1YEoSeIlg0wh2VOQ6cC1QCrcgY="; }; vendorHash = null; diff --git a/pkgs/development/tools/go-minimock/default.nix b/pkgs/development/tools/go-minimock/default.nix index 344e8aa47965e..279004b9c8c71 100644 --- a/pkgs/development/tools/go-minimock/default.nix +++ b/pkgs/development/tools/go-minimock/default.nix @@ -2,20 +2,20 @@ buildGoModule rec { pname = "go-minimock"; - version = "3.1.3"; + version = "3.3.6"; src = fetchFromGitHub { owner = "gojuno"; repo = "minimock"; rev = "v${version}"; - sha256 = "sha256-6n5FOHTfsLYqnhlDO3etMnrypeOElmwdvoFQb3aSBts="; + sha256 = "sha256-ru3+MJ1GbzVDi6niiz7SpL0qa9mE89uhcH5/PHbVugE="; }; ldflags = [ "-s" "-w" "-X main.version=${version}" ]; - vendorHash = "sha256-fiSU2NB9rWIPQLdnui5CB5VcadTVUg2JaO3ma7DAYqo="; + vendorHash = "sha256-eCM/EDdXZSa+pg35V6YiZ5gaC4rj8Wt8HhCgaMPoP+Y="; doCheck = true; diff --git a/pkgs/development/tools/go-task/default.nix b/pkgs/development/tools/go-task/default.nix index 2be4e63f3453c..3c5e13473fc6f 100644 --- a/pkgs/development/tools/go-task/default.nix +++ b/pkgs/development/tools/go-task/default.nix @@ -8,16 +8,16 @@ buildGoModule rec { pname = "go-task"; - version = "3.33.1"; + version = "3.34.1"; src = fetchFromGitHub { owner = pname; repo = "task"; rev = "refs/tags/v${version}"; - hash = "sha256-GeAVI1jsYH66KIJsdC20j3HADl6y8gRezSWBUEF1Muw="; + hash = "sha256-ngDAItX7aTWDpf2lOiJYUC7QXXzrexPV3nvZ/esLb7g="; }; - vendorHash = "sha256-kKYE8O+07ha35koSO+KG/K98rVbmDLqAhvaZsVHwUjY="; + vendorHash = "sha256-Czf7Bkld1NWJzU34NfDFL/Us9awnhlv8V9S4XxeoGxY="; doCheck = false; diff --git a/pkgs/development/tools/goa/default.nix b/pkgs/development/tools/goa/default.nix index 0290eda782b91..19ac74f7f427c 100644 --- a/pkgs/development/tools/goa/default.nix +++ b/pkgs/development/tools/goa/default.nix @@ -5,15 +5,15 @@ buildGoModule rec { pname = "goa"; - version = "3.14.1"; + version = "3.14.6"; src = fetchFromGitHub { owner = "goadesign"; repo = "goa"; rev = "v${version}"; - sha256 = "sha256-acF9y0EHjALB+h/mf96MfCUlSTvp3QdhwEbu3gBA/y4="; + hash = "sha256-u26k4jKT68AMb9pQf/5FCuX+yGpcuGJ6uOIqXfWbg2o="; }; - vendorHash = "sha256-RI2UMmdFCNo6iE9MnWwsJtholjF4jNbCNNLk8nylgtc="; + vendorHash = "sha256-PcPYsTjWt4N27ahHCdx+ZylujmuX/hopN9o7vKUAA5w="; subPackages = [ "cmd/goa" ]; diff --git a/pkgs/development/tools/gocode/default.nix b/pkgs/development/tools/gocode/default.nix deleted file mode 100644 index 687b69cf20278..0000000000000 --- a/pkgs/development/tools/gocode/default.nix +++ /dev/null @@ -1,43 +0,0 @@ -{ lib, buildGoPackage, fetchFromGitHub }: - -buildGoPackage rec { - pname = "gocode-unstable"; - version = "2020-04-06"; - rev = "4acdcbdea79de6b3dee1c637eca5cbea0fdbe37c"; - - goPackagePath = "github.com/mdempsky/gocode"; - - # we must allow references to the original `go` package, - # because `gocode` needs to dig into $GOROOT to provide completions for the - # standard packages. - allowGoReference = true; - - src = fetchFromGitHub { - inherit rev; - - owner = "mdempsky"; - repo = "gocode"; - sha256 = "0i1hc089gb6a4mcgg56vn5l0q96wrlza2n08l4349s3dc2j559fb"; - }; - - goDeps = ./deps.nix; - - meta = with lib; { - description = "An autocompletion daemon for the Go programming language"; - longDescription = '' - Gocode is a helper tool which is intended to be integrated with your - source code editor, like vim, neovim and emacs. It provides several - advanced capabilities, which currently includes: - - - Context-sensitive autocompletion - - It is called daemon, because it uses client/server architecture for - caching purposes. In particular, it makes autocompletions very fast. - Typical autocompletion time with warm cache is 30ms, which is barely - noticeable. - ''; - homepage = "https://github.com/mdempsky/gocode"; - license = licenses.mit; - maintainers = with maintainers; [ kalbasit ]; - }; -} diff --git a/pkgs/development/tools/gocode/deps.nix b/pkgs/development/tools/gocode/deps.nix deleted file mode 100644 index b2518109171a9..0000000000000 --- a/pkgs/development/tools/gocode/deps.nix +++ /dev/null @@ -1,12 +0,0 @@ -# This file was generated by https://github.com/kamilchm/go2nix v1.3.0 -[ - { - goPackagePath = "golang.org/x/tools"; - fetch = { - type = "git"; - url = "https://go.googlesource.com/tools"; - rev = "72e4a01eba4315301fd9ce00c8c2f492580ded8a"; - sha256 = "0a8c7j4w784w441j3j3bh640vy1g6g214641qv485wyi0xj49anf"; - }; - } -] diff --git a/pkgs/development/tools/gofumpt/default.nix b/pkgs/development/tools/gofumpt/default.nix index 6becc6f4002d4..36e38163e2a77 100644 --- a/pkgs/development/tools/gofumpt/default.nix +++ b/pkgs/development/tools/gofumpt/default.nix @@ -21,7 +21,11 @@ buildGoModule rec { CGO_ENABLED = "0"; - ldflags = "-s -w -X main.version=v${version}"; + ldflags = [ + "-s" + "-w" + "-X main.version=v${version}" + ]; checkFlags = [ # Requires network access (Error: module lookup disabled by GOPROXY=off). diff --git a/pkgs/development/tools/goimports-reviser/default.nix b/pkgs/development/tools/goimports-reviser/default.nix index 05243325b1473..30cf393334c9c 100644 --- a/pkgs/development/tools/goimports-reviser/default.nix +++ b/pkgs/development/tools/goimports-reviser/default.nix @@ -5,13 +5,13 @@ buildGoModule rec { pname = "goimports-reviser"; - version = "3.6.2"; + version = "3.6.4"; src = fetchFromGitHub { owner = "incu6us"; repo = "goimports-reviser"; rev = "v${version}"; - hash = "sha256-mq18UXvA1YeM+Jw+xJXQrWayM3bMtIX2lztm2/iyMDc="; + hash = "sha256-+GVC/qJnqWm5tsn2Y5BPafapp7ct9kqHWlDNxukEZsM="; }; vendorHash = "sha256-z+FeAXPXKi653im2X2WOP1R9gRl/x7UBnndoEXoxdwA="; diff --git a/pkgs/development/tools/golines/default.nix b/pkgs/development/tools/golines/default.nix index 986e68dd634d0..68ee00ecb638a 100644 --- a/pkgs/development/tools/golines/default.nix +++ b/pkgs/development/tools/golines/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "golines"; - version = "0.11.0"; + version = "0.12.2"; src = fetchFromGitHub { owner = "segmentio"; repo = pname; rev = "v${version}"; - sha256 = "sha256-2K9KAg8iSubiTbujyFGN3yggrL+EDyeUCs9OOta/19A="; + sha256 = "sha256-D0gI9BA0vgM1DBqwolNTfPsTCWuOGrcu5gAVFEdyVGg="; }; - vendorHash = "sha256-rxYuzn4ezAxaeDhxd8qdOzt+CKYIh03A9zKNdzILq18="; + vendorHash = "sha256-jI3/m1UdZMKrS3H9jPhcVAUCjc1G/ejzHi9SCTy24ak="; meta = with lib; { description = "A golang formatter that fixes long lines"; diff --git a/pkgs/development/tools/gomplate/default.nix b/pkgs/development/tools/gomplate/default.nix index 307b568c833f7..28f9d8341fb4f 100644 --- a/pkgs/development/tools/gomplate/default.nix +++ b/pkgs/development/tools/gomplate/default.nix @@ -12,16 +12,16 @@ # buildGoModule rec { buildGo120Module rec { pname = "gomplate"; - version = "3.11.6"; + version = "3.11.7"; src = fetchFromGitHub { owner = "hairyhenderson"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-IXNI+VkmW7k+Hkx2gv8OCpfAe4qJ3sH9KT/mO8y3JcU="; + hash = "sha256-0cYQ44SF8fQ5Ml0tRUbqTFZ+zDVTV6elox1q6tNsG7Q="; }; - vendorHash = "sha256-DAtgebWwGBYioKTvW2qtzy+GPxYE2SuXIYpex6M85Vc="; + vendorHash = "sha256-8siITXKIqDbph/74aBEvkbLVqHE30VyRompFL6z92zA="; postPatch = '' # some tests require network access diff --git a/pkgs/development/tools/gotraceui/default.nix b/pkgs/development/tools/gotraceui/default.nix index 7eeb11612f934..15cc09ffebd2e 100644 --- a/pkgs/development/tools/gotraceui/default.nix +++ b/pkgs/development/tools/gotraceui/default.nix @@ -5,16 +5,16 @@ buildGoModule rec { pname = "gotraceui"; - version = "0.3.0"; + version = "0.4.0"; src = fetchFromGitHub { owner = "dominikh"; repo = "gotraceui"; rev = "v${version}"; - sha256 = "sha256-hdI1TT33pPHK5018RQ+riPVqzqOF/xDkvh0WoYi6Pes="; + sha256 = "sha256-Rforuh9YlTv/mTpQm0+BaY+Ssc4DAiDCzVkIerP5Uz0="; }; - vendorHash = "sha256-nXPiwSG2Hs86/raDvTv2p77P6Xwm+t8VT0dvZpXE8Os="; + vendorHash = "sha256-dNV5u6BG+2Nzci6dX/4/4WAeM/zXE5+Ix0HqIsNnm0E="; subPackages = ["cmd/gotraceui"]; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/development/tools/gptcommit/default.nix b/pkgs/development/tools/gptcommit/default.nix index 3b7892022b859..19d18edf1c42b 100644 --- a/pkgs/development/tools/gptcommit/default.nix +++ b/pkgs/development/tools/gptcommit/default.nix @@ -11,7 +11,7 @@ let pname = "gptcommit"; - version = "0.5.14"; + version = "0.5.16"; in rustPlatform.buildRustPackage { inherit pname version; @@ -20,10 +20,10 @@ rustPlatform.buildRustPackage { owner = "zurawiki"; repo = pname; rev = "v${version}"; - hash = "sha256-xjaFr1y2Fd7IWbJlegnIsfS5/oMJYd6QTnwp7IK17xM="; + hash = "sha256-JhMkK2zw3VL9o7j8DJmjY/im+GyCjfV2TJI3GDo8T8c="; }; - cargoHash = "sha256-VZrlEJi/UPQTGFiSpZs+Do+69CY3zdqGkAnUxMYvvaw="; + cargoHash = "sha256-ye9MAfG3m24ofV95Kr+KTP4FEqfrsm3aTQ464hG9q08="; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/development/tools/gqlgenc/default.nix b/pkgs/development/tools/gqlgenc/default.nix index 07ea00756e58d..e103402fbb85a 100644 --- a/pkgs/development/tools/gqlgenc/default.nix +++ b/pkgs/development/tools/gqlgenc/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "gqlgenc"; - version = "0.16.2"; + version = "0.18.0"; src = fetchFromGitHub { owner = "yamashou"; repo = "gqlgenc"; rev = "v${version}"; - sha256 = "sha256-XNmCSkgJJ2notrv0Din4jlU9EoHJcznjEUiXQgQ5a7I="; + sha256 = "sha256-KAUdddVjX1yQLSqnvSAoYPaLL8N8SOfR/gvQ5In4Z/Y="; }; excludedPackages = [ "example" ]; diff --git a/pkgs/development/tools/grpc-gateway/default.nix b/pkgs/development/tools/grpc-gateway/default.nix index b278c846343ae..83d5a575b838e 100644 --- a/pkgs/development/tools/grpc-gateway/default.nix +++ b/pkgs/development/tools/grpc-gateway/default.nix @@ -1,17 +1,36 @@ -{ buildGoModule, fetchFromGitHub, lib }: +{ buildGoModule, fetchFromGitHub, lib, testers, grpc-gateway }: buildGoModule rec { pname = "grpc-gateway"; - version = "2.19.0"; + version = "2.19.1"; src = fetchFromGitHub { owner = "grpc-ecosystem"; repo = "grpc-gateway"; rev = "v${version}"; - sha256 = "sha256-mppN8twrOTIVK3TDQcv5fYZtXKPA34EWGPo31JxME1g="; + sha256 = "sha256-CdGQpQfOSimeio8v1lZ7xzE/oAS2qFyu+uN+H9i7vpo="; }; - vendorHash = "sha256-R/V3J9vCSQppm59RCaJrDIS0Juff5htPl/GjTwhHEfQ="; + vendorHash = "sha256-no7kZGpf/VOuceC3J+izGFQp5aMS3b+Rn+x4BFZ2zgs="; + + ldflags = [ + "-X=main.version=${version}" + "-X=main.date=1970-01-01T00:00:00Z" + "-X=main.commit=unknown" + ]; + + passthru.tests = { + version = testers.testVersion { + package = grpc-gateway; + command = "protoc-gen-grpc-gateway --version"; + version = "Version ${version}, commit unknown, built at 1970-01-01T00:00:00Z"; + }; + openapiv2Version = testers.testVersion { + package = grpc-gateway; + command = "protoc-gen-openapiv2 --version"; + version = "Version ${version}, commit unknown, built at 1970-01-01T00:00:00Z"; + }; + }; meta = with lib; { description = diff --git a/pkgs/development/tools/hcloud/default.nix b/pkgs/development/tools/hcloud/default.nix index 51d3c6f353859..6cfebf31ec898 100644 --- a/pkgs/development/tools/hcloud/default.nix +++ b/pkgs/development/tools/hcloud/default.nix @@ -6,16 +6,16 @@ buildGoModule rec { pname = "hcloud"; - version = "1.41.1"; + version = "1.42.0"; src = fetchFromGitHub { owner = "hetznercloud"; repo = "cli"; rev = "refs/tags/v${version}"; - hash = "sha256-ZC71++aC0fUkUG0h5aRxU0FpR1eNruFWAB1e2e5c/Vo="; + hash = "sha256-cJNCp60OZBPXtda787PDT9iInxidTvzYmf9orifmS/A="; }; - vendorHash = "sha256-T407Y4IZlJnrCGSWpuN1wv8Dng2F7++2cMfLGjYC2vM="; + vendorHash = "sha256-IIszQCAsNSQYieM1JQH1Dald9saUhZ2kPhwZ1p2GTp4="; ldflags = [ "-s" diff --git a/pkgs/development/tools/hobbes/default.nix b/pkgs/development/tools/hobbes/default.nix index 5c3eb84b2d5ab..851d64545d8f6 100644 --- a/pkgs/development/tools/hobbes/default.nix +++ b/pkgs/development/tools/hobbes/default.nix @@ -1,7 +1,8 @@ { lib , stdenv -, llvmPackages_10 +, llvmPackages , fetchFromGitHub +, fetchpatch , cmake , llvm_12 , ncurses @@ -10,9 +11,9 @@ , libxml2 , python3 }: -llvmPackages_10.stdenv.mkDerivation { +llvmPackages.stdenv.mkDerivation { pname = "hobbes"; - version = "unstable-2023-06-03"; + version = "0-unstable-2023-06-03"; src = fetchFromGitHub { owner = "morganstanley"; @@ -21,6 +22,19 @@ llvmPackages_10.stdenv.mkDerivation { hash = "sha256-2v0yk35/cLKTjX0Qbc8cjc7Y6bamRSa9GpPvGoxL2Cw="; }; + patches = [ + # fix build for LLVM-12+ + # https://github.com/morganstanley/hobbes/pull/452 + (fetchpatch { + name = "include-cstdint.patch"; + url = "https://github.com/morganstanley/hobbes/commit/924b71fca06c61e606792cc8db8521fb499d4237.patch"; + hash = "sha256-/VsWtTYc3LBOnm4Obgx/MOqaaWZhUc8yzmkygtNz+mY="; + }) + ]; + + # only one warning generated. try to remove on next update + env.CXXFLAGS = "-Wno-error=deprecated-copy"; + # TODO: re-enable Python tests once they work on Python 3 # currently failing with "I don't know how to decode the primitive type: b'bool'" postPatch = '' diff --git a/pkgs/development/tools/infisical/default.nix b/pkgs/development/tools/infisical/default.nix index d007756cacf06..0f0c8e1ef89f7 100644 --- a/pkgs/development/tools/infisical/default.nix +++ b/pkgs/development/tools/infisical/default.nix @@ -15,7 +15,7 @@ let buildHashes = builtins.fromJSON (builtins.readFile ./hashes.json); # the version of infisical - version = "0.16.7"; + version = "0.16.10"; # the platform-specific, statically linked binary src = diff --git a/pkgs/development/tools/infisical/hashes.json b/pkgs/development/tools/infisical/hashes.json index 11d5f4238f9b4..4b631427a553a 100644 --- a/pkgs/development/tools/infisical/hashes.json +++ b/pkgs/development/tools/infisical/hashes.json @@ -1,6 +1,6 @@ { "_comment": "@generated by pkgs/development/tools/infisical/update.sh" -, "x86_64-linux": "sha256-wN+NoIDl8B/ANxES2XVkQBpTK3zUL+Xh+4BxKlcSkr0=" -, "x86_64-darwin": "sha256-ZkIGzcQd+MMJjiHPubLnHcc3H7Qpahs5LyJ+ytrYgfo=" -, "aarch64-linux": "sha256-P/AMelaej8D3BlUQBjOxCn8DADkVsU7lBY5dLJ0Wz6I=" -, "aarch64-darwin": "sha256-jQkLwY6Sq9cN/ujz4wlzjTBjaIYzZKMh/J/5CMWuRf8=" +, "x86_64-linux": "sha256-EjAm8toawTRKlnVr/dXXvfZ7IubKgjJh5qkR5lwBga8=" +, "x86_64-darwin": "sha256-W2enmLucQpDLaUzsbSmQ2wq1nU5k5a93iqlAERJ/b/g=" +, "aarch64-linux": "sha256-i5irWQmZVqKuzgAmL1wvo/3V7czEiIG8yANDhdb0tPk=" +, "aarch64-darwin": "sha256-GjG8FBT3eulRYLyy4iiuXuQjiL+Au8Dd/h7buXDNlyQ=" } diff --git a/pkgs/development/tools/jaq/default.nix b/pkgs/development/tools/jaq/default.nix index ae7c6b35bd7bd..b95473aac7452 100644 --- a/pkgs/development/tools/jaq/default.nix +++ b/pkgs/development/tools/jaq/default.nix @@ -7,16 +7,16 @@ rustPlatform.buildRustPackage rec { pname = "jaq"; - version = "1.2.0"; + version = "1.3.0"; src = fetchFromGitHub { owner = "01mf02"; repo = "jaq"; rev = "v${version}"; - hash = "sha256-Jc/etdQtJfFmmdxWdJUVQqPjHTCY6ZUAO+ShNJboOq0="; + hash = "sha256-QXlHiVlKx9qmW5Cw4IGzjuUSUfoc9IvA5ZkTc1Ev37Q="; }; - cargoHash = "sha256-TaWD9xpTsNWQt/Wz5PYY0mgFfP5d/Jn3EhcHUywUk3Q="; + cargoHash = "sha256-9fv8Z9AE9GV/Bq+iAsxUkD/CS25/kOBKKS4SAke/tFk="; buildInputs = lib.optionals stdenv.isDarwin [ darwin.apple_sdk.frameworks.Security diff --git a/pkgs/development/tools/jira-cli-go/default.nix b/pkgs/development/tools/jira-cli-go/default.nix index 51b847769cbbd..d031cd9394d78 100644 --- a/pkgs/development/tools/jira-cli-go/default.nix +++ b/pkgs/development/tools/jira-cli-go/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "jira-cli-go"; - version = "1.5.0"; + version = "1.5.1"; src = fetchFromGitHub { owner = "ankitpokhrel"; repo = "jira-cli"; rev = "v${version}"; - hash = "sha256-FdDoKww/6WzKCZBrgvh72TRovMXLOOzlmoFreMGWAeo="; + hash = "sha256-edytj9hB8lDwy3qGSyLudu5G4DSRGKhD0vDoWz5eUgs="; }; vendorHash = "sha256-DAdzbANqr0fa4uO8k/yJFoirgbZiKOQhOH8u8d+ncao="; diff --git a/pkgs/development/tools/jql/default.nix b/pkgs/development/tools/jql/default.nix index b69779e05d6b4..98ff0d6bb5be3 100644 --- a/pkgs/development/tools/jql/default.nix +++ b/pkgs/development/tools/jql/default.nix @@ -5,16 +5,16 @@ rustPlatform.buildRustPackage rec { pname = "jql"; - version = "7.1.2"; + version = "7.1.3"; src = fetchFromGitHub { owner = "yamafaktory"; repo = pname; rev = "jql-v${version}"; - hash = "sha256-gdHxaQkJJw/cvnWhAodp57VIfW5oehNE7/zGs7B5Akg="; + hash = "sha256-UiIIPA4JREWniNOcqMW2jnfaEDpkT1jbdv3whr49Gqg="; }; - cargoHash = "sha256-urFwYHlHhxOmSBSpfEJV/3sg40r8CTnAOjjLqQ/GXeY="; + cargoHash = "sha256-9ApucHYFHBritAdylzQuUDa47yG8dAeIQwPezXP3BXY="; meta = with lib; { description = "A JSON Query Language CLI tool built with Rust"; diff --git a/pkgs/development/tools/k6/default.nix b/pkgs/development/tools/k6/default.nix index 06f8251f0993c..c5c8f85e91265 100644 --- a/pkgs/development/tools/k6/default.nix +++ b/pkgs/development/tools/k6/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "k6"; - version = "0.48.0"; + version = "0.49.0"; src = fetchFromGitHub { owner = "grafana"; repo = pname; rev = "v${version}"; - hash = "sha256-6EiHLm69mBhv0ujFPdXUk1wPZwKk9TS250QHrdXfQD8="; + hash = "sha256-zlsHEAGsey+qe0s7sle9Kt/V0hTp6uzelJmRlATznUY="; }; subPackages = [ "./" ]; diff --git a/pkgs/development/tools/kdash/default.nix b/pkgs/development/tools/kdash/default.nix index 5af8543a4f644..73746875247dc 100644 --- a/pkgs/development/tools/kdash/default.nix +++ b/pkgs/development/tools/kdash/default.nix @@ -12,13 +12,13 @@ rustPlatform.buildRustPackage rec { pname = "kdash"; - version = "0.4.5"; + version = "0.6.0"; src = fetchFromGitHub { owner = "kdash-rs"; repo = pname; rev = "v${version}"; - sha256 = "sha256-6jCbsF9Nl5A7PZM59Z1ozcJ3V0ajA/4V3A6hunrB9Xg="; + sha256 = "sha256-XY6aBqLHbif3RsytNm7JnDXspICJuhS7SJ+ApwTeqX4="; }; nativeBuildInputs = [ perl python3 pkg-config ]; @@ -26,7 +26,7 @@ rustPlatform.buildRustPackage rec { buildInputs = [ openssl xorg.xcbutil ] ++ lib.optional stdenv.isDarwin AppKit; - cargoHash = "sha256-EwlY4kBieFYxXGreeFb2VxLMwFZnYB6+d/Zv7fjsJls="; + cargoHash = "sha256-ODQf+Fvil+oBJcM38h1HdrcgtJw0b65f5auLuZtUgik="; meta = with lib; { description = "A simple and fast dashboard for Kubernetes"; diff --git a/pkgs/development/tools/kind/default.nix b/pkgs/development/tools/kind/default.nix index 63f6fff66b623..1f58fd637a6de 100644 --- a/pkgs/development/tools/kind/default.nix +++ b/pkgs/development/tools/kind/default.nix @@ -20,7 +20,7 @@ buildGoModule rec { CGO_ENABLED = 0; GOFLAGS = [ "-trimpath" ]; - ldflags = [ "-buildid=" "-w" ]; + ldflags = [ "-w" ]; doCheck = false; diff --git a/pkgs/development/tools/kube-linter/default.nix b/pkgs/development/tools/kube-linter/default.nix index bcacc28214bf5..141239c403f22 100644 --- a/pkgs/development/tools/kube-linter/default.nix +++ b/pkgs/development/tools/kube-linter/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "kube-linter"; - version = "0.6.5"; + version = "0.6.7"; src = fetchFromGitHub { owner = "stackrox"; repo = pname; rev = "v${version}"; - sha256 = "sha256-gygzibpTpdVg1ZenAXIDHXYwAemlr6qkioE+GV52NkE="; + sha256 = "sha256-D9QJsYaYvGjDucr0Xedg2LEqfwTxzIQBBNNFZ1m5D/U="; }; - vendorHash = "sha256-ZeAAvL5pOvHMAsDBe/0CBeayTsUrPDK5a5rAxHAu64o="; + vendorHash = "sha256-ARrMHjR/fOGS8EDMCKiEr3ubWjqDySb/AdX9jNYWOVA="; ldflags = [ "-s" "-w" "-X golang.stackrox.io/kube-linter/internal/version.version=${version}" diff --git a/pkgs/development/tools/kubedock/default.nix b/pkgs/development/tools/kubedock/default.nix index ca0af78076f50..947054b44da20 100644 --- a/pkgs/development/tools/kubedock/default.nix +++ b/pkgs/development/tools/kubedock/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "kubedock"; - version = "0.15.1"; + version = "0.15.2"; src = fetchFromGitHub { owner = "joyrex2001"; repo = "kubedock"; rev = version; - hash = "sha256-/uC/blvR6+F5Uyj1Fc5I5eSKucc0w76U0cwWKULfdyU="; + hash = "sha256-EewvlH+Coz/78AfZfj230BNzuPsKvB7pnV0sJtvYGnc="; }; vendorHash = "sha256-rkn6JzPB1UNpaCon6LyYNUAsV88t3xbppDrtBwjBEHk="; diff --git a/pkgs/development/tools/language-servers/beancount-language-server/default.nix b/pkgs/development/tools/language-servers/beancount-language-server/default.nix index 9eb1d746c216d..844bc89567d06 100644 --- a/pkgs/development/tools/language-servers/beancount-language-server/default.nix +++ b/pkgs/development/tools/language-servers/beancount-language-server/default.nix @@ -1,20 +1,26 @@ { lib , fetchFromGitHub , rustPlatform +, stdenv }: rustPlatform.buildRustPackage rec { pname = "beancount-language-server"; - version = "1.3.1"; + version = "1.3.4"; src = fetchFromGitHub { owner = "polarmutex"; repo = "beancount-language-server"; rev = "v${version}"; - hash = "sha256-9IkbEOG6xcmpowsLj/RHnMFGQxh02JMQsTVli4hvs/M="; + hash = "sha256-C44Z8JaEZvwgocaGjWT3rUAgIBtCRo0xZappMsydR7g="; }; - cargoHash = "sha256-qhN2//hhCaKpm0HAiUL/CfdrtvAXgR34vXBECB8UDxE="; + cargoHash = "sha256-NMSNCURSO1iIWHH27FI5Y0q7+Ghds8VSxRGBOp+fH6A="; + + # Workaround for https://github.com/NixOS/nixpkgs/issues/166205 + env = lib.optionalAttrs (stdenv.cc.libcxx != null) { + NIX_LDFLAGS = "-l${stdenv.cc.libcxx.cxxabi.libName}"; + }; doInstallCheck = true; postInstallCheck = '' diff --git a/pkgs/development/tools/language-servers/csharp-ls/default.nix b/pkgs/development/tools/language-servers/csharp-ls/default.nix index cefb7a969a40c..f3c4122321360 100644 --- a/pkgs/development/tools/language-servers/csharp-ls/default.nix +++ b/pkgs/development/tools/language-servers/csharp-ls/default.nix @@ -3,24 +3,24 @@ , dotnetCorePackages }: let - inherit (dotnetCorePackages) sdk_7_0; + inherit (dotnetCorePackages) sdk_8_0; in buildDotnetGlobalTool rec { pname = "csharp-ls"; - version = "0.10.0"; + version = "0.11.0"; - nugetSha256 = "sha256-1t8U2Q4lIlj2QwbnevAMMGcqtpPh5zk0Bd7EHa7qvCI="; + nugetSha256 = "sha256-zB8uJqlf8kL8jh3WNsPQF7EJpONqi23co3O/iBzfEoU="; - dotnet-sdk = sdk_7_0; - dotnet-runtime = sdk_7_0; + dotnet-sdk = sdk_8_0; + dotnet-runtime = sdk_8_0; meta = with lib; { description = "Roslyn-based LSP language server for C#"; homepage = "https://github.com/razzmatazz/csharp-language-server"; changelog = "https://github.com/razzmatazz/csharp-language-server/releases/tag/v${version}"; license = licenses.mit; - platforms = platforms.linux; + platforms = platforms.unix; maintainers = with maintainers; [ GaetanLepage ]; }; } diff --git a/pkgs/development/tools/language-servers/helm-ls/default.nix b/pkgs/development/tools/language-servers/helm-ls/default.nix index 5b39548aa65e9..841546c176e62 100644 --- a/pkgs/development/tools/language-servers/helm-ls/default.nix +++ b/pkgs/development/tools/language-servers/helm-ls/default.nix @@ -8,13 +8,13 @@ buildGoModule rec { pname = "helm-ls"; - version = "0.0.9"; + version = "0.0.10"; src = fetchFromGitHub { owner = "mrjosh"; repo = "helm-ls"; rev = "v${version}"; - hash = "sha256-DfFXKkYrJbO4stBM/5qewhy1etvJS6ey12jmd/NIs8Q="; + hash = "sha256-m+kr1NIrWqQGbWxOOu2mbPEk3AQPt8KqsByylUanbTM="; }; vendorHash = "sha256-8mSX7fwgxwZ8aIXfv3WxLiVH5PjSFzcxM0oekod84tA="; diff --git a/pkgs/development/tools/language-servers/jdt-language-server/default.nix b/pkgs/development/tools/language-servers/jdt-language-server/default.nix deleted file mode 100644 index 3de28f65145f5..0000000000000 --- a/pkgs/development/tools/language-servers/jdt-language-server/default.nix +++ /dev/null @@ -1,102 +0,0 @@ -{ lib -, stdenv -, fetchurl -, makeWrapper -, jdk -}: - -stdenv.mkDerivation rec { - pname = "jdt-language-server"; - version = "1.26.0"; - timestamp = "202307271613"; - - src = fetchurl { - url = "https://download.eclipse.org/jdtls/milestones/${version}/jdt-language-server-${version}-${timestamp}.tar.gz"; - sha256 = "sha256-ul/l7jsqg5UofiSu8gzm4Xg0z46HcRfmyqysamiKbFM="; - }; - - sourceRoot = "."; - - buildInputs = [ - jdk - ]; - - nativeBuildInputs = [ - makeWrapper - ]; - - installPhase = - let - # The application ships with config directories for linux and mac - configDir = if stdenv.isDarwin then "config_mac" else "config_linux"; - in - '' - # Copy jars - install -D -t $out/share/java/plugins/ plugins/*.jar - - # Copy config directories for linux and mac - install -Dm 444 -t $out/share/config ${configDir}/* - - # Get latest version of launcher jar - # e.g. org.eclipse.equinox.launcher_1.5.800.v20200727-1323.jar - launcher="$(ls $out/share/java/plugins/org.eclipse.equinox.launcher_* | sort -V | tail -n1)" - - # The wrapper script will create a directory in the user's cache, copy in the config - # files since this dir can't be read-only, and by default use this as the runtime dir. - # - # The following options are required as per the upstream documentation: - # - # -Declipse.application=org.eclipse.jdt.ls.core.id1 - # -Dosgi.bundles.defaultStartLevel=4 - # -Declipse.product=org.eclipse.jdt.ls.core.product - # --add-modules=ALL-SYSTEM - # --add-opens java.base/java.util=ALL-UNNAMED - # --add-opens java.base/java.lang=ALL-UNNAMED - # - # The following options configure the server to run without writing logs to the nix store: - # - # -Dosgi.sharedConfiguration.area.readOnly=true - # -Dosgi.checkConfiguration=true - # -Dosgi.configuration.cascaded=true - # -Dosgi.sharedConfiguration.area=$out/share/config - # - # Other options which the caller may change: - # - # -Dlog.level: - # Log level. - # This can be overidden by setting JAVA_OPTS. - # - # The caller must specify the following: - # - # -data: - # The application stores runtime data here. We set this to <cache-dir>/$PWD - # so that projects don't collide with each other. - # This can be overidden by specifying -configuration to the wrapper. - # - # Java options, such as -Xms and Xmx can be specified by setting JAVA_OPTS. - # - makeWrapper ${jdk}/bin/java $out/bin/jdt-language-server \ - --add-flags "-Declipse.application=org.eclipse.jdt.ls.core.id1" \ - --add-flags "-Dosgi.bundles.defaultStartLevel=4" \ - --add-flags "-Declipse.product=org.eclipse.jdt.ls.core.product" \ - --add-flags "-Dosgi.sharedConfiguration.area=$out/share/config" \ - --add-flags "-Dosgi.sharedConfiguration.area.readOnly=true" \ - --add-flags "-Dosgi.checkConfiguration=true" \ - --add-flags "-Dosgi.configuration.cascaded=true" \ - --add-flags "-Dlog.level=ALL" \ - --add-flags "\$JAVA_OPTS" \ - --add-flags "-jar $launcher" \ - --add-flags "--add-modules=ALL-SYSTEM" \ - --add-flags "--add-opens java.base/java.util=ALL-UNNAMED" \ - --add-flags "--add-opens java.base/java.lang=ALL-UNNAMED" - ''; - - meta = with lib; { - homepage = "https://github.com/eclipse/eclipse.jdt.ls"; - description = "Java language server"; - sourceProvenance = with sourceTypes; [ binaryBytecode ]; - license = licenses.epl20; - maintainers = with maintainers; [ matt-snider ]; - platforms = platforms.all; - }; -} diff --git a/pkgs/development/tools/language-servers/jq-lsp/default.nix b/pkgs/development/tools/language-servers/jq-lsp/default.nix index 08e83763fd09f..13f8527906625 100644 --- a/pkgs/development/tools/language-servers/jq-lsp/default.nix +++ b/pkgs/development/tools/language-servers/jq-lsp/default.nix @@ -3,18 +3,29 @@ , fetchFromGitHub }: -buildGoModule { +buildGoModule rec { pname = "jq-lsp"; - version = "unstable-2023-10-27"; + version = "0.1.2"; src = fetchFromGitHub { owner = "wader"; repo = "jq-lsp"; - rev = "b4707e7776a4eb3093b1a7533ebd41368240095a"; - hash = "sha256-AU4xGweeFx+kSsrqkTtSjl+N77cITF/qvAVZGUZY5SE="; + rev = "refs/tags/v${version}"; + hash = "sha256-a3ZqVWG7kjWQzL1efrKc4s4D14qD/+6JM26vaduxhWg="; }; - vendorHash = "sha256-ppQ81uERHBgOr/bm/CoDSWcK+IqHwvcL6RFi0DgoLuw="; + vendorHash = "sha256-bIe006I1ryvIJ4hC94Ux2YVdlmDIM4oZaK/qXafYYe0="; + + # based on https://github.com/wader/jq-lsp/blob/master/.goreleaser.yml + CGO_ENABLED = 0; + GOFLAGS = [ "-trimpath" ]; + ldflags = [ + "-s" + "-w" + "-X main.version=${version}" + "-X main.commit=${src.rev}" + "-X main.builtBy=Nix" + ]; meta = with lib; { description = "jq language server"; diff --git a/pkgs/development/tools/language-servers/kotlin-language-server/default.nix b/pkgs/development/tools/language-servers/kotlin-language-server/default.nix index 8ec9ebb8f30a4..af7775f57246f 100644 --- a/pkgs/development/tools/language-servers/kotlin-language-server/default.nix +++ b/pkgs/development/tools/language-servers/kotlin-language-server/default.nix @@ -2,10 +2,10 @@ stdenv.mkDerivation rec { pname = "kotlin-language-server"; - version = "1.3.7"; + version = "1.3.9"; src = fetchzip { url = "https://github.com/fwcd/kotlin-language-server/releases/download/${version}/server.zip"; - hash = "sha256-BEQywg3ZU4LtF9trntGbDp64SIWH4y93o/VVMSRP+cc="; + hash = "sha256-4piXggWK/BXDXrgkvJisaO5nOs72cvU1F47rKy4z+rc="; }; dontBuild = true; diff --git a/pkgs/development/tools/language-servers/neocmakelsp/default.nix b/pkgs/development/tools/language-servers/neocmakelsp/default.nix index 6397dabb1da46..0b8c3b5f7b498 100644 --- a/pkgs/development/tools/language-servers/neocmakelsp/default.nix +++ b/pkgs/development/tools/language-servers/neocmakelsp/default.nix @@ -5,16 +5,16 @@ rustPlatform.buildRustPackage rec { pname = "neocmakelsp"; - version = "0.6.17"; + version = "0.6.19"; src = fetchFromGitHub { owner = "Decodetalkers"; repo = "neocmakelsp"; rev = "v${version}"; - hash = "sha256-0Rc5oPm6BAjPmoRHUO3gVivbQt2p2y62VbT5NIzHtpI="; + hash = "sha256-nYZ9H66sA5umOTn/w/P62kJy3WHLwYPWWs1B74bTAEM="; }; - cargoHash = "sha256-7ifdmW9JBjz0jxpltn5gFa60oNsB4daA6cXCLnBne7o="; + cargoHash = "sha256-1jpKo/fSWLf0pFgzTvnkaghz/Fdy+MJhZsKQPaJHlfs="; meta = with lib; { description = "A cmake lsp based on tower-lsp and treesitter"; diff --git a/pkgs/development/tools/language-servers/nixd/default.nix b/pkgs/development/tools/language-servers/nixd/default.nix index d5afaae1d81e3..601a568554be8 100644 --- a/pkgs/development/tools/language-servers/nixd/default.nix +++ b/pkgs/development/tools/language-servers/nixd/default.nix @@ -5,6 +5,7 @@ , bison , boost182 , flex +, fmt , gtest , libbacktrace , lit @@ -18,13 +19,13 @@ stdenv.mkDerivation rec { pname = "nixd"; - version = "1.2.2"; + version = "1.2.3"; src = fetchFromGitHub { owner = "nix-community"; repo = "nixd"; rev = version; - hash = "sha256-W44orkPZQ9gDUTogb8YVIaw4WHzUA+ExOXhTnZlJ6yY="; + hash = "sha256-i/z5VnsWPWloQfdk48i+a4XaGnTMPJ6QougChkT9IWw="; }; mesonBuildType = "release"; @@ -45,6 +46,7 @@ stdenv.mkDerivation rec { buildInputs = [ libbacktrace nix + fmt gtest boost182 llvmPackages.llvm diff --git a/pkgs/development/tools/language-servers/ruff-lsp/default.nix b/pkgs/development/tools/language-servers/ruff-lsp/default.nix index 904798b8d472e..460a5b98136c1 100644 --- a/pkgs/development/tools/language-servers/ruff-lsp/default.nix +++ b/pkgs/development/tools/language-servers/ruff-lsp/default.nix @@ -16,7 +16,7 @@ buildPythonPackage rec { pname = "ruff-lsp"; - version = "0.0.49"; + version = "0.0.51"; pyproject = true; disabled = pythonOlder "3.7"; @@ -24,7 +24,7 @@ buildPythonPackage rec { owner = "astral-sh"; repo = "ruff-lsp"; rev = "refs/tags/v${version}"; - hash = "sha256-AL0p5NbhBxgw0mJYWcGb4EeztO7ermmcm5YrO/M8TKU="; + hash = "sha256-PEbDYVig0i1V8EF6ZDtdCTUz7Gz1HpZiOK0OZ1mbwjY="; }; postPatch = '' @@ -64,10 +64,11 @@ buildPythonPackage rec { ]; meta = with lib; { + changelog = "https://github.com/astral-sh/ruff-lsp/releases/tag/v${version}"; description = "A Language Server Protocol implementation for Ruff"; homepage = "https://github.com/astral-sh/ruff-lsp"; - changelog = "https://github.com/astral-sh/ruff-lsp/releases/tag/v${version}"; license = licenses.mit; + mainProgram = "ruff-lsp"; maintainers = with maintainers; [ figsoda kalekseev ]; }; } diff --git a/pkgs/development/tools/language-servers/verible/default.nix b/pkgs/development/tools/language-servers/verible/default.nix index e607713f49f8e..4809b85e2e5be 100644 --- a/pkgs/development/tools/language-servers/verible/default.nix +++ b/pkgs/development/tools/language-servers/verible/default.nix @@ -18,8 +18,8 @@ buildBazelPackage rec { # These environment variables are read in bazel/build-version.py to create # a build string shown in the tools --version output. # If env variables not set, it would attempt to extract it from .git/. - GIT_DATE = "2023-12-23"; - GIT_VERSION = "v0.0-3471-g9cb45092"; + GIT_DATE = "2024-02-01"; + GIT_VERSION = "v0.0-3515-g2d841599"; # Derive nix package version from GIT_VERSION: "v1.2-345-abcde" -> "1.2.345" version = builtins.concatStringsSep "." (lib.take 3 (lib.drop 1 (builtins.splitVersion GIT_VERSION))); @@ -28,16 +28,9 @@ buildBazelPackage rec { owner = "chipsalliance"; repo = "verible"; rev = "${GIT_VERSION}"; - hash = "sha256-nFt5TeFv63Igx8Zer2s/ZLj5DsHeZj5V/+3burnEm9g="; + hash = "sha256-D/blcex/St1nLKvjzuKnmAJE8HVlGy8ampmXIxKK11M="; }; - patches = [ - # Patch WORKSPACE file to not include windows-related dependencies, - # as they are removed by bazel, breaking the fixed output derivation - # TODO: fix upstream - ./remove-unused-deps.patch - ]; - bazel = bazel_5; bazelFlags = [ "--//bazel:use_local_flex_bison" @@ -46,7 +39,7 @@ buildBazelPackage rec { ]; fetchAttrs = { - sha256 = "sha256-gZzrgZsHQ9zMoIDooVo9nRQbkJ41igme8wcNFj5EzWc="; + sha256 = "sha256-2YruKvU7OZQ7mKNrqYITat+cmf/DEytDElYw7CvkxJk="; }; nativeBuildInputs = [ @@ -98,6 +91,7 @@ buildBazelPackage rec { homepage = "https://github.com/chipsalliance/verible"; license = licenses.asl20; maintainers = with maintainers; [ hzeller newam ]; + # Platforms linux only currently; some LIBTOOL issue on Darwin w/ bazel platforms = platforms.linux; }; } diff --git a/pkgs/development/tools/language-servers/verible/remove-unused-deps.patch b/pkgs/development/tools/language-servers/verible/remove-unused-deps.patch deleted file mode 100644 index 57b152d9db319..0000000000000 --- a/pkgs/development/tools/language-servers/verible/remove-unused-deps.patch +++ /dev/null @@ -1,22 +0,0 @@ -diff --git a/WORKSPACE b/WORKSPACE -index ad16b3a1..52b66703 100644 ---- a/WORKSPACE -+++ b/WORKSPACE -@@ -81,17 +81,6 @@ load("@com_github_google_rules_install//:setup.bzl", "install_rules_setup") - - install_rules_setup() - --# Need to load before rules_flex/rules_bison to make sure --# win_flex_bison is the chosen toolchain on Windows --load("//bazel:win_flex_bison.bzl", "win_flex_configure") -- --win_flex_configure( -- name = "win_flex_bison", -- sha256 = "8d324b62be33604b2c45ad1dd34ab93d722534448f55a16ca7292de32b6ac135", -- # bison 3.8.2, flex 2.6.4 -- url = "https://github.com/lexxmark/winflexbison/releases/download/v2.5.25/win_flex_bison-2.5.25.zip", --) -- - http_archive( - name = "rules_m4", - sha256 = "b0309baacfd1b736ed82dc2bb27b0ec38455a31a3d5d20f8d05e831ebeef1a8e", diff --git a/pkgs/development/tools/lightningcss/default.nix b/pkgs/development/tools/lightningcss/default.nix index 47a4b1e94b8de..7edc7e3695aa1 100644 --- a/pkgs/development/tools/lightningcss/default.nix +++ b/pkgs/development/tools/lightningcss/default.nix @@ -6,16 +6,16 @@ rustPlatform.buildRustPackage rec { pname = "lightningcss"; - version = "1.22.0"; + version = "1.23.0"; src = fetchFromGitHub { owner = "parcel-bundler"; repo = "lightningcss"; rev = "refs/tags/v${version}"; - sha256 = "K7whGWIukMrCqGaunHVuvr9k1EOTPSMb0x/A2JysVI0="; + hash = "sha256-vMxf5WQtoj7FycU1zHn5t/bJtwh6t4wqyKfoetzojzU="; }; - cargoHash = "sha256-itwU6JIxDbem93KIpjWyKBiZhQP62D9h8ohIcMD14+0="; + cargoHash = "sha256-g7/1s3FvuwsJvypeHOqJA/lVBkQcLATWtlygI8IW+QA="; buildFeatures = [ "cli" diff --git a/pkgs/development/tools/mbed-cli/default.nix b/pkgs/development/tools/mbed-cli/default.nix index cc8294fafe60a..f5d55ce10dfbf 100644 --- a/pkgs/development/tools/mbed-cli/default.nix +++ b/pkgs/development/tools/mbed-cli/default.nix @@ -4,11 +4,11 @@ with python3Packages; buildPythonApplication rec { pname = "mbed-cli"; - version = "1.9.1"; + version = "1.10.5"; src = fetchPypi { inherit pname version; - sha256 = "1228plh55id03qywsw0ai88ypdpbh9iz18jfcyhn21pci7mj77fv"; + sha256 = "sha256-X+hNVM8fsy0VFTqFr1pPKWRimacBenTcY4y+PBJpvlI="; }; nativeCheckInputs = [ diff --git a/pkgs/development/tools/melange/default.nix b/pkgs/development/tools/melange/default.nix index 8c5bb751195a1..0ee59814bf417 100644 --- a/pkgs/development/tools/melange/default.nix +++ b/pkgs/development/tools/melange/default.nix @@ -6,13 +6,13 @@ buildGoModule rec { pname = "melange"; - version = "0.5.5"; + version = "0.5.6"; src = fetchFromGitHub { owner = "chainguard-dev"; repo = pname; rev = "v${version}"; - hash = "sha256-Dzw49SCdZUtSZoh0I7d1qfqg4JCbl4VEtYUeHIw8Xng="; + hash = "sha256-/oQDtUL3gjm4BsUbx7p3AmM7hcrd8Ui5Dih0DFAl5rs="; # populate values that require us to use git. By doing this in postFetch we # can delete .git afterwards and maintain better reproducibility of the src. leaveDotGit = true; @@ -25,7 +25,7 @@ buildGoModule rec { ''; }; - vendorHash = "sha256-YzKkmz/4KxP/pcdMrhhS7Owu6Nor8VZ3RFqdCsi7pRc="; + vendorHash = "sha256-qQm/a7pE7mwqvYFFUceqElV+Qg1G39/z048wxYrV7E4="; subPackages = [ "." ]; diff --git a/pkgs/development/tools/metal-cli/default.nix b/pkgs/development/tools/metal-cli/default.nix index 5aa1c2e5698d7..62bc61a98a256 100644 --- a/pkgs/development/tools/metal-cli/default.nix +++ b/pkgs/development/tools/metal-cli/default.nix @@ -6,16 +6,16 @@ buildGoModule rec { pname = "metal-cli"; - version = "0.19.0"; + version = "0.20.0"; src = fetchFromGitHub { owner = "equinix"; repo = pname; rev = "v${version}"; - hash = "sha256-S3/VKK+ab6RMuhqP1RRQK7ATcZn37Nws3ya3v9ujZ5M="; + hash = "sha256-Y6zjEB7LKEb1CGQwNs8jAx1BFSw+EGwgXBMGyQUJhYc="; }; - vendorHash = "sha256-tu3AryadBbvQzYCEefGAWOnpEki3VJVxFZAseHrXhD4="; + vendorHash = "sha256-FJ68j41Nb6KqiZPJE/u0TYDkXt43810Nx0p/JQDopn8="; ldflags = [ "-s" diff --git a/pkgs/development/tools/micronaut/default.nix b/pkgs/development/tools/micronaut/default.nix index 92db12ce89acf..8c0ed2e4bfd57 100644 --- a/pkgs/development/tools/micronaut/default.nix +++ b/pkgs/development/tools/micronaut/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "micronaut"; - version = "4.2.3"; + version = "4.2.4"; src = fetchzip { url = "https://github.com/micronaut-projects/micronaut-starter/releases/download/v${version}/micronaut-cli-${version}.zip"; - sha256 = "sha256-+03wjNxIZr8vhvK3zfvFBwXC5WmEs5A6mydGXsmGuCI="; + sha256 = "sha256-Jhy1q+6VdLPScq882QU8dIUNNKs1i+3Mug5ycUWFp9U="; }; nativeBuildInputs = [ makeWrapper installShellFiles ]; diff --git a/pkgs/development/tools/minizinc/ide.nix b/pkgs/development/tools/minizinc/ide.nix index bacd769271e4c..ce115971f944d 100644 --- a/pkgs/development/tools/minizinc/ide.nix +++ b/pkgs/development/tools/minizinc/ide.nix @@ -1,26 +1,34 @@ -{ lib, mkDerivation, fetchFromGitHub, qtbase, qtwebengine, qtwebkit, qmake, minizinc }: +{ lib, stdenv, fetchFromGitHub, qtbase, qmake, qtwebsockets, minizinc, makeWrapper, Cocoa }: -mkDerivation rec { +let + executableLoc = if stdenv.isDarwin then "$out/Applications/MiniZincIDE.app/Contents/MacOS/MiniZincIDE" else "$out/bin/MiniZincIDE"; +in +stdenv.mkDerivation rec { pname = "minizinc-ide"; - version = "2.5.5"; + version = "2.8.2"; src = fetchFromGitHub { owner = "MiniZinc"; repo = "MiniZincIDE"; rev = version; - sha256 = "sha256-0U3KFRDam8psbCaEOcrwqzICAy1oBgo8SFEiR/PMqZk="; + hash = "sha256-3L/hulNI7e2wE9gMt2h3mS0ubHZ4kcVpwALCmWQtv7A="; fetchSubmodules = true; }; - nativeBuildInputs = [ qmake ]; - buildInputs = [ qtbase qtwebengine qtwebkit ]; + nativeBuildInputs = [ qmake makeWrapper ]; + buildInputs = [ qtbase qtwebsockets ] ++ lib.optionals stdenv.isDarwin [ Cocoa ]; sourceRoot = "${src.name}/MiniZincIDE"; dontWrapQtApps = true; - postInstall = '' - wrapProgram $out/bin/MiniZincIDE --prefix PATH ":" ${lib.makeBinPath [ minizinc ]} + postInstall = lib.optionalString stdenv.hostPlatform.isDarwin '' + mkdir -p $out/Applications + mv $out/bin/MiniZincIDE.app $out/Applications/ + '' + '' + wrapProgram ${executableLoc} \ + --prefix PATH ":" ${lib.makeBinPath [ minizinc ]} \ + --set QT_QPA_PLATFORM_PLUGIN_PATH "${qtbase}/lib/qt-6/plugins/platforms" ''; meta = with lib; { @@ -34,7 +42,7 @@ mkDerivation rec { It is a subset of the higher-level language Zinc. ''; license = licenses.mpl20; - platforms = platforms.linux; + platforms = platforms.unix; maintainers = [ maintainers.dtzWill ]; }; } diff --git a/pkgs/development/tools/misc/act/default.nix b/pkgs/development/tools/misc/act/default.nix index 5a22531dbcf58..c620ca1649f00 100644 --- a/pkgs/development/tools/misc/act/default.nix +++ b/pkgs/development/tools/misc/act/default.nix @@ -5,16 +5,16 @@ buildGoModule rec { pname = "act"; - version = "0.2.57"; + version = "0.2.59"; src = fetchFromGitHub { owner = "nektos"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-lof3PWscGHQ9ZTF83wGyG0jMebYY2xec+HouQezr2d8="; + hash = "sha256-Y8g+eVZ0c0YPVL8E/JAqD6EheQX6sBHpw1tT88BkbtI="; }; - vendorHash = "sha256-7nvUs1R2jybh+PR/cHml8lR5jU25b2liPKLH47WDVxQ="; + vendorHash = "sha256-0Sjj9+YJcIkigvJOXxtDVcUylZmVY/Xv/IYpEBN46Is="; doCheck = false; diff --git a/pkgs/development/tools/misc/autoconf/2.71.nix b/pkgs/development/tools/misc/autoconf/2.71.nix new file mode 100644 index 0000000000000..1fcb819bd4b72 --- /dev/null +++ b/pkgs/development/tools/misc/autoconf/2.71.nix @@ -0,0 +1,69 @@ +{ lib, stdenv, fetchurl, m4, perl, texinfo }: + +# Note: this package is used for bootstrapping fetchurl, and thus +# cannot use fetchpatch! All mutable patches (generated by GitHub or +# cgit) that are needed here should be included directly in Nixpkgs as +# files. + +stdenv.mkDerivation rec { + pname = "autoconf"; + version = "2.71"; + outputs = [ "out" "doc" ]; + + src = fetchurl { + url = "mirror://gnu/autoconf/autoconf-${version}.tar.xz"; + sha256 = "197sl23irn6s9pd54rxj5vcp5y8dv65jb9yfqgr2g56cxg7q6k7i"; + }; + patches = [ + # fix stale autom4te cache race condition: + # https://savannah.gnu.org/support/index.php?110521 + ./2.71-fix-race.patch + ]; + + strictDeps = true; + nativeBuildInputs = [ m4 perl texinfo ]; + buildInputs = [ m4 ]; + postBuild = " + make html + "; + + postInstall = " + make install-html + "; + + # Work around a known issue in Cygwin. See + # http://thread.gmane.org/gmane.comp.sysutils.autoconf.bugs/6822 for + # details. + # There are many test failures on `i386-pc-solaris2.11'. + doCheck = ((!stdenv.isCygwin) && (!stdenv.isSunOS)); + + # Don't fixup "#! /bin/sh" in Autoconf, otherwise it will use the + # "fixed" path in generated files! + dontPatchShebangs = true; + + enableParallelBuilding = true; + + # Make the Autotest test suite run in parallel. + preCheck ='' + export TESTSUITEFLAGS="-j$NIX_BUILD_CORES" + ''; + + meta = { + homepage = "https://www.gnu.org/software/autoconf/"; + description = "Part of the GNU Build System"; + + longDescription = '' + GNU Autoconf is an extensible package of M4 macros that produce + shell scripts to automatically configure software source code + packages. These scripts can adapt the packages to many kinds of + UNIX-like systems without manual user intervention. Autoconf + creates a configuration script for a package from a template + file that lists the operating system features that the package + can use, in the form of M4 macro calls. + ''; + + license = lib.licenses.gpl3Plus; + + platforms = lib.platforms.all; + }; +} diff --git a/pkgs/development/tools/misc/autoconf/default.nix b/pkgs/development/tools/misc/autoconf/default.nix index 1fcb819bd4b72..8039e36a4f209 100644 --- a/pkgs/development/tools/misc/autoconf/default.nix +++ b/pkgs/development/tools/misc/autoconf/default.nix @@ -7,18 +7,13 @@ stdenv.mkDerivation rec { pname = "autoconf"; - version = "2.71"; + version = "2.72"; outputs = [ "out" "doc" ]; src = fetchurl { url = "mirror://gnu/autoconf/autoconf-${version}.tar.xz"; - sha256 = "197sl23irn6s9pd54rxj5vcp5y8dv65jb9yfqgr2g56cxg7q6k7i"; + hash = "sha256-uohcExlXjWyU1G6bDc60AUyq/iSQ5Deg28o/JwoiP1o="; }; - patches = [ - # fix stale autom4te cache race condition: - # https://savannah.gnu.org/support/index.php?110521 - ./2.71-fix-race.patch - ]; strictDeps = true; nativeBuildInputs = [ m4 perl texinfo ]; diff --git a/pkgs/development/tools/misc/blackfire/default.nix b/pkgs/development/tools/misc/blackfire/default.nix index 095727e5713e1..a55f0d0edea94 100644 --- a/pkgs/development/tools/misc/blackfire/default.nix +++ b/pkgs/development/tools/misc/blackfire/default.nix @@ -10,7 +10,7 @@ stdenv.mkDerivation rec { pname = "blackfire"; - version = "2.24.2"; + version = "2.25.0"; src = passthru.sources.${stdenv.hostPlatform.system} or (throw "Unsupported platform for blackfire: ${stdenv.hostPlatform.system}"); @@ -57,23 +57,23 @@ stdenv.mkDerivation rec { sources = { "x86_64-linux" = fetchurl { url = "https://packages.blackfire.io/debian/pool/any/main/b/blackfire/blackfire_${version}_amd64.deb"; - sha256 = "8dcsXdisPlPx6glIw+cSTQ2UJ6hh9CfqmFj2kqZWkR8="; + sha256 = "F3OkFTHPO6zBOYu2umAQIPW7CQ+K+J2/mmL98H2xaCg="; }; "i686-linux" = fetchurl { url = "https://packages.blackfire.io/debian/pool/any/main/b/blackfire/blackfire_${version}_i386.deb"; - sha256 = "Kf4Cm9Zp9F4vKkOSqTf+zfTo9OlMd94HYbAy0cTjZ74="; + sha256 = "/rDH9dzSlqDSqkIHzDy/8rJQ+Ow9SAPn+/oRGP37lL8="; }; "aarch64-linux" = fetchurl { url = "https://packages.blackfire.io/debian/pool/any/main/b/blackfire/blackfire_${version}_arm64.deb"; - sha256 = "8ZKmONiFl5dKN4NsvY5bEmyHcn28KQCXl2lnv3giAU4="; + sha256 = "2fjRPrl9SYCS32lO4bFLam4IrigMjucVc/OVg4yrWsM="; }; "aarch64-darwin" = fetchurl { url = "https://packages.blackfire.io/blackfire/${version}/blackfire-darwin_arm64.pkg.tar.gz"; - sha256 = "zmbLDnQL2oJMEAclms1gNLOOAD68EsveEA0yzbDcFvM="; + sha256 = "GYjKOUDLCHPkI5k4nt2NB/R8IJhLP+4VNifEhRSsnu8="; }; "x86_64-darwin" = fetchurl { url = "https://packages.blackfire.io/blackfire/${version}/blackfire-darwin_amd64.pkg.tar.gz"; - sha256 = "1PejmLFwYXRetJ4WukQZ+m9HZuoxvUxU9h0EXlLHGOQ="; + sha256 = "/Uvwq3wxbIT0kqKJJfh9W55EguUoBdTQ426FI0XOD0o="; }; }; diff --git a/pkgs/development/tools/misc/blackfire/php-probe.nix b/pkgs/development/tools/misc/blackfire/php-probe.nix index 15c6343572172..f960749bd708f 100644 --- a/pkgs/development/tools/misc/blackfire/php-probe.nix +++ b/pkgs/development/tools/misc/blackfire/php-probe.nix @@ -14,47 +14,47 @@ assert lib.assertMsg (!php.ztsSupport) "blackfire only supports non zts versions let phpMajor = lib.versions.majorMinor php.version; - version = "1.92.6"; + version = "1.92.9"; hashes = { "x86_64-linux" = { system = "amd64"; hash = { - "8.1" = "sha256-ygBgs6tGZyim69tCol+tTXV5Lt/JLuatmKAo9aomM1s="; - "8.2" = "sha256-TrT7H2Tbu4ZrfeCUjpqlTMw9DAxS62aLvzTbpAdsZOc="; - "8.3" = "sha256-AH/kYlpVjCwXxNa90Qe5XpzAdSyNn9jdeyYTLlXxfLI="; + "8.1" = "sha256-pvJHzqhpKdLyWexqCdynOXIoIkb6WPFogQzzdGSl0Go="; + "8.2" = "sha256-M2ihNS2IK0tO+lXXSrJZLguRzyrV8q/45gmK0pfxjuo="; + "8.3" = "sha256-v4vt0GkM8pbZ+zJrNqu+h1TM680RpnCQwNDyFFD/vuE="; }; }; "i686-linux" = { system = "i386"; hash = { - "8.1" = "sha256-c1i6eq7l4LeUpuZCsYzS1N++IU4j0WydCxPokSJf6dI="; - "8.2" = "sha256-gWhyUQ3QP13klusSv7KWdHatnjy/4k17VvHJUCtqF1g="; - "8.3" = "sha256-kI3sVcI/bDVRMcjzPzlai1D2HvmBTXwQ3DF5zcp2GJk="; + "8.1" = "sha256-+IrL8OGjny+FPLNNj0N0oJGSuUA9nZFBkalW6qbBtbI="; + "8.2" = "sha256-z5oFFh+0spuku+nZf9ICL17upLHoA2k6StAmVpKIxyw="; + "8.3" = "sha256-1maDNZb92ptbbiIUZxwEBNk6oQPf6f2LVHvsXrpmdQ8="; }; }; "aarch64-linux" = { system = "arm64"; hash = { - "8.1" = "sha256-1QPKTNOsJTrx+Q0MigiMBDCC7X3YlSDB33gy8DU9KBg="; - "8.2" = "sha256-e3YUAOLWSmsiHczb44oRiOIafMSBWQaJY+m4OSUMzV8="; - "8.3" = "sha256-h0/ZEy6IkIpAfeL0Al7a+FpPeX2KMSd7zD1i1ew5rUk="; + "8.1" = "sha256-apIHM85SDtdrNy2zkgue4nLS+IYg0aqO67tjt3iPMvQ="; + "8.2" = "sha256-vafJYIXksjQXNOufSNsRCBOkhh9Da1sp0X1JJtH0wNM="; + "8.3" = "sha256-JTfFszym+zq4U2V1HOkGB41OR/mt7GotHo1HThjLEV0="; }; }; "aarch64-darwin" = { system = "arm64"; hash = { - "8.1" = "sha256-gLCPTTCfoBgp3GgKzVisfGlxQsYa+4x2WDwvhwcf1R8="; - "8.2" = "sha256-OtWUwkeLGfxkxjGSDMyv61UVoSwFo1puGjmwYOB51nI="; - "8.3" = "sha256-M3lz0TnTuJVgD32RS3ffcZsKVJdyx75AjSKFkkODiSE="; + "8.1" = "sha256-zj4oSpW2ubEdk5n8FjQF4oOWcjMd5V1G5ul8kHj/fyU="; + "8.2" = "sha256-aedyASZs4Sy0CEX9Y5qjJnzzcvUdO9eYg9nZXrOcVnI="; + "8.3" = "sha256-Sla+W+dz2foTnF3ys4MIcnP0FnSjiyWHfsMW0+Vhkpw="; }; }; "x86_64-darwin" = { system = "amd64"; hash = { - "8.1" = "sha256-dVau4kieQsj4m97Sepw1jMRtf1VCUnvZEJjVsO+hFWs="; - "8.2" = "sha256-HRBVr4JTiZDRzIt6JfITD5N824Ivcag6DUyEhsc23co="; - "8.3" = "sha256-nRRG42/Yhsupln4j7nWlKvfQ067fwQ17un1yXplPf14="; + "8.1" = "sha256-YorZctBEUgPHnoXtcf8xkn6DfhM1BZnBNpfi5o7y0AM="; + "8.2" = "sha256-5zmwJu1Ux5vebFeu1WMHRCKalB/qgm3/G74OPrd7nhc="; + "8.3" = "sha256-vm2VK3jPR25ICxiKMqzh9DyzG9EVJ/rX3i7LQMox3gs="; }; }; }; diff --git a/pkgs/development/tools/misc/circleci-cli/default.nix b/pkgs/development/tools/misc/circleci-cli/default.nix index b4bc5fe48d6fb..6e26a71ff38dd 100644 --- a/pkgs/development/tools/misc/circleci-cli/default.nix +++ b/pkgs/development/tools/misc/circleci-cli/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "circleci-cli"; - version = "0.1.29658"; + version = "0.1.29936"; src = fetchFromGitHub { owner = "CircleCI-Public"; repo = pname; rev = "v${version}"; - sha256 = "sha256-zubYAeVYddFC6J7kCjTlhNciy/X95yzEq2UyRWi2Jh8="; + sha256 = "sha256-PJy2kg727ZEsEbQzR5EE8SeYfM1ZqaIbS2FZxewn5J0="; }; vendorHash = "sha256-mDpuoKOW2/PexZ/yJeQ2yzCjoKfD23J36pZ5BPDo/mg="; diff --git a/pkgs/development/tools/misc/cmake-language-server/default.nix b/pkgs/development/tools/misc/cmake-language-server/default.nix index 93ad66cd05967..f3ecd30cd4a21 100644 --- a/pkgs/development/tools/misc/cmake-language-server/default.nix +++ b/pkgs/development/tools/misc/cmake-language-server/default.nix @@ -1,27 +1,27 @@ { lib , buildPythonApplication +, pythonOlder , fetchFromGitHub +, pdm-backend , cmake-format , pygls , cmake -, pdm-backend , pytest-datadir , pytestCheckHook -, pythonOlder }: buildPythonApplication rec { pname = "cmake-language-server"; - version = "0.1.8"; + version = "0.1.9"; format = "pyproject"; - disabled = pythonOlder "3.7"; + disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "regen100"; repo = "cmake-language-server"; rev = "refs/tags/v${version}"; - hash = "sha256-7AlF+FqhZR+6lLsR1dxAGHd/GU+mB3ojYLDXVm7Il4M="; + hash = "sha256-8ypl0YA6ep8/jBL3tsutSgCW13NZTZzaNafaOamcT08="; }; patches = [ @@ -64,6 +64,7 @@ buildPythonApplication rec { meta = with lib; { description = "CMake LSP Implementation"; homepage = "https://github.com/regen100/cmake-language-server"; + changelog = "https://github.com/regen100/cmake-language-server/releases/tag/v${version}"; license = licenses.mit; maintainers = with maintainers; [ kira-bruneau ]; mainProgram = "cmake-language-server"; diff --git a/pkgs/development/tools/misc/d-spy/default.nix b/pkgs/development/tools/misc/d-spy/default.nix index 0c5ebe9afe6fe..2d2ca20c0bc48 100644 --- a/pkgs/development/tools/misc/d-spy/default.nix +++ b/pkgs/development/tools/misc/d-spy/default.nix @@ -43,6 +43,7 @@ stdenv.mkDerivation rec { passthru = { updateScript = gnome.updateScript { packageName = "d-spy"; + versionPolicy = "odd-unstable"; }; }; diff --git a/pkgs/development/tools/misc/dart-sass/default.nix b/pkgs/development/tools/misc/dart-sass/default.nix index 14fef3a3306af..f4ca641267ffd 100644 --- a/pkgs/development/tools/misc/dart-sass/default.nix +++ b/pkgs/development/tools/misc/dart-sass/default.nix @@ -10,22 +10,24 @@ }: let - sass-language = fetchFromGitHub { + embedded-protocol-version = "2.4.0"; + + embedded-protocol = fetchFromGitHub { owner = "sass"; repo = "sass"; - rev = "refs/tags/embedded-protocol-2.3.0"; - hash = "sha256-J2heASfIwj4lxjsRs/0zRHSaF2tij9bO7IgXp0u/eiI="; + rev = "refs/tags/embedded-protocol-${embedded-protocol-version}"; + hash = "sha256-19YQTda5su2PI2vLzVRCn7fQoH5vEg3539gXEeLLvV8="; }; in buildDartApplication rec { pname = "dart-sass"; - version = "1.69.0"; + version = "1.70.0"; src = fetchFromGitHub { owner = "sass"; repo = pname; rev = version; - hash = "sha256-kn3cwi1k2CkzbS+Q/JaYy8Nq3Ej0GyWifG1Bq5ZEVHA="; + hash = "sha256-JLVcoDAngP1y8EC4K6fIJdPu2Xm8LLAxUm8BTK5tSVk="; }; pubspecLock = lib.importJSON ./pubspec.lock.json; @@ -37,7 +39,7 @@ buildDartApplication rec { preConfigure = '' mkdir -p build - ln -s ${sass-language} build/language + ln -s ${embedded-protocol} build/language HOME="$TMPDIR" buf generate ''; @@ -51,31 +53,35 @@ buildDartApplication rec { maintainers = with maintainers; [ lelgenio ]; }; - passthru.tests = { - version = testers.testVersion { - package = dart-sass; - command = "dart-sass --version"; - }; + passthru = { + inherit embedded-protocol-version embedded-protocol; + updateScript = ./update.sh; + tests = { + version = testers.testVersion { + package = dart-sass; + command = "dart-sass --version"; + }; - simple = testers.testEqualContents { - assertion = "dart-sass compiles a basic scss file"; - expected = writeText "expected" '' - body h1{color:#123} - ''; - actual = runCommand "actual" - { - nativeBuildInputs = [ dart-sass ]; - base = writeText "base" '' - body { - $color: #123; - h1 { - color: $color; + simple = testers.testEqualContents { + assertion = "dart-sass compiles a basic scss file"; + expected = writeText "expected" '' + body h1{color:#123} + ''; + actual = runCommand "actual" + { + nativeBuildInputs = [ dart-sass ]; + base = writeText "base" '' + body { + $color: #123; + h1 { + color: $color; + } } - } - ''; - } '' - dart-sass --style=compressed $base > $out - ''; + ''; + } '' + dart-sass --style=compressed $base > $out + ''; + }; }; }; } diff --git a/pkgs/development/tools/misc/dart-sass/pubspec.lock.json b/pkgs/development/tools/misc/dart-sass/pubspec.lock.json index 9654b26e6d529..820f44ac9f31c 100644 --- a/pkgs/development/tools/misc/dart-sass/pubspec.lock.json +++ b/pkgs/development/tools/misc/dart-sass/pubspec.lock.json @@ -4,31 +4,31 @@ "dependency": "transitive", "description": { "name": "_fe_analyzer_shared", - "sha256": "ae92f5d747aee634b87f89d9946000c2de774be1d6ac3e58268224348cd0101a", + "sha256": "36a321c3d2cbe01cbcb3540a87b8843846e0206df3e691fa7b23e19e78de6d49", "url": "https://pub.dev" }, "source": "hosted", - "version": "61.0.0" + "version": "65.0.0" }, "analyzer": { "dependency": "direct dev", "description": { "name": "analyzer", - "sha256": "ea3d8652bda62982addfd92fdc2d0214e5f82e43325104990d4f4c4a2a313562", + "sha256": "dfe03b90ec022450e22513b5e5ca1f01c0c01de9c3fba2f7fd233cb57a6b9a07", "url": "https://pub.dev" }, "source": "hosted", - "version": "5.13.0" + "version": "6.3.0" }, "archive": { "dependency": "direct dev", "description": { "name": "archive", - "sha256": "e0902a06f0e00414e4e3438a084580161279f137aeb862274710f29ec10cf01e", + "sha256": "22600aa1e926be775fa5fe7e6894e7fb3df9efda8891c73f70fb3262399a432d", "url": "https://pub.dev" }, "source": "hosted", - "version": "3.3.9" + "version": "3.4.10" }, "args": { "dependency": "direct main", @@ -84,11 +84,11 @@ "dependency": "direct main", "description": { "name": "cli_pkg", - "sha256": "009e19944bbfb07c3b97f2f8c9941aa01ca70a7d3d0018e813303b4c3905c9b9", + "sha256": "7b088621eb3d486c17a4122389d8b3f36658450d5a405fa229166b1a71a7ce4a", "url": "https://pub.dev" }, "source": "hosted", - "version": "2.5.0" + "version": "2.7.2" }, "cli_repl": { "dependency": "direct main", @@ -104,11 +104,11 @@ "dependency": "direct dev", "description": { "name": "cli_util", - "sha256": "b8db3080e59b2503ca9e7922c3df2072cf13992354d5e944074ffa836fba43b7", + "sha256": "c05b7406fdabc7a49a3929d4af76bcaccbbffcbcdcf185b082e1ae07da323d19", "url": "https://pub.dev" }, "source": "hosted", - "version": "0.4.0" + "version": "0.4.1" }, "collection": { "dependency": "direct main", @@ -134,11 +134,11 @@ "dependency": "transitive", "description": { "name": "coverage", - "sha256": "2fb815080e44a09b85e0f2ca8a820b15053982b2e714b59267719e8a9ff17097", + "sha256": "8acabb8306b57a409bf4c83522065672ee13179297a6bb0cb9ead73948df7c76", "url": "https://pub.dev" }, "source": "hosted", - "version": "1.6.3" + "version": "1.7.2" }, "crypto": { "dependency": "direct dev", @@ -164,21 +164,21 @@ "dependency": "direct dev", "description": { "name": "dart_style", - "sha256": "1efa911ca7086affd35f463ca2fc1799584fb6aa89883cf0af8e3664d6a02d55", + "sha256": "40ae61a5d43feea6d24bd22c0537a6629db858963b99b4bc1c3db80676f32368", "url": "https://pub.dev" }, "source": "hosted", - "version": "2.3.2" + "version": "2.3.4" }, "dartdoc": { "dependency": "direct dev", "description": { "name": "dartdoc", - "sha256": "d9bab893c9f42615f62bf2d3ff2b89d5905952d1d42cc7890003537249cb472e", + "sha256": "cbc4520cf486395741209693c3e7ef70653b1879b5a73e010815bf50431d330c", "url": "https://pub.dev" }, "source": "hosted", - "version": "6.3.0" + "version": "8.0.3" }, "ffi": { "dependency": "transitive", @@ -234,11 +234,11 @@ "dependency": "direct dev", "description": { "name": "grinder", - "sha256": "48495acdb3df702c55c952c6536faf11631b8401a292eb0d182ef332fc568b56", + "sha256": "e1996e485d2b56bb164a8585679758d488fbf567273f51c432c8733fee1f6188", "url": "https://pub.dev" }, "source": "hosted", - "version": "0.9.4" + "version": "0.9.5" }, "html": { "dependency": "transitive", @@ -314,11 +314,11 @@ "dependency": "direct dev", "description": { "name": "lints", - "sha256": "0a217c6c989d21039f1498c3ed9f3ed71b354e69873f13a8dfc3c9fe76f1b452", + "sha256": "cbf8d4b858bb0134ef3ef87841abdf8d63bfc255c266b7bf6b39daa1085c4290", "url": "https://pub.dev" }, "source": "hosted", - "version": "2.1.1" + "version": "3.0.0" }, "logging": { "dependency": "transitive", @@ -334,31 +334,31 @@ "dependency": "transitive", "description": { "name": "markdown", - "sha256": "acf35edccc0463a9d7384e437c015a3535772e09714cf60e07eeef3a15870dcd", + "sha256": "1b134d9f8ff2da15cb298efe6cd8b7d2a78958c1b00384ebcbdf13fe340a6c90", "url": "https://pub.dev" }, "source": "hosted", - "version": "7.1.1" + "version": "7.2.1" }, "matcher": { "dependency": "transitive", "description": { "name": "matcher", - "sha256": "1803e76e6653768d64ed8ff2e1e67bea3ad4b923eb5c56a295c3e634bad5960e", + "sha256": "d2323aa2060500f906aa31a895b4030b6da3ebdcc5619d14ce1aada65cd161cb", "url": "https://pub.dev" }, "source": "hosted", - "version": "0.12.16" + "version": "0.12.16+1" }, "meta": { "dependency": "direct main", "description": { "name": "meta", - "sha256": "a6e590c838b18133bb482a2745ad77c5bb7715fb0451209e1a7567d416678b8e", + "sha256": "d584fa6707a52763a52446f02cc621b077888fb63b93bbcb1143a7be5a0c0c04", "url": "https://pub.dev" }, "source": "hosted", - "version": "1.10.0" + "version": "1.11.0" }, "mime": { "dependency": "transitive", @@ -424,11 +424,11 @@ "dependency": "direct main", "description": { "name": "path", - "sha256": "8829d8a55c13fc0e37127c29fedf290c102f4e40ae94ada574091fe0ff96c917", + "sha256": "087ce49c3f0dc39180befefc60fdb4acd8f8620e5682fe2476afd0b3688bb4af", "url": "https://pub.dev" }, "source": "hosted", - "version": "1.8.3" + "version": "1.9.0" }, "petitparser": { "dependency": "transitive", @@ -444,11 +444,11 @@ "dependency": "transitive", "description": { "name": "pointycastle", - "sha256": "7c1e5f0d23c9016c5bbd8b1473d0d3fb3fc851b876046039509e18e0c7485f2c", + "sha256": "43ac87de6e10afabc85c445745a7b799e04de84cebaa4fd7bf55a5e1e9604d29", "url": "https://pub.dev" }, "source": "hosted", - "version": "3.7.3" + "version": "3.7.4" }, "pool": { "dependency": "direct main", @@ -474,11 +474,11 @@ "dependency": "direct dev", "description": { "name": "protoc_plugin", - "sha256": "a800528e47f6efd31a57213dd11b6036f36cbd6677785742a2121e96f7c7a2b9", + "sha256": "fb0554851c9eca30bd18405fbbfe81e39166d4a2f0e5b770606fd69da3da0b2f", "url": "https://pub.dev" }, "source": "hosted", - "version": "21.1.1" + "version": "21.1.2" }, "pub_api_client": { "dependency": "direct dev", @@ -664,31 +664,31 @@ "dependency": "direct dev", "description": { "name": "test", - "sha256": "9b0dd8e36af4a5b1569029949d50a52cb2a2a2fdaa20cebb96e6603b9ae241f9", + "sha256": "694c108e13c6b35b15fcb0f8f03eddf8373f93b044c9497b5e81ce09f7381bda", "url": "https://pub.dev" }, "source": "hosted", - "version": "1.24.6" + "version": "1.25.1" }, "test_api": { "dependency": "transitive", "description": { "name": "test_api", - "sha256": "5c2f730018264d276c20e4f1503fd1308dfbbae39ec8ee63c5236311ac06954b", + "sha256": "9955ae474176f7ac8ee4e989dadfb411a58c30415bcfb648fa04b2b8a03afa7f", "url": "https://pub.dev" }, "source": "hosted", - "version": "0.6.1" + "version": "0.7.0" }, "test_core": { "dependency": "transitive", "description": { "name": "test_core", - "sha256": "4bef837e56375537055fdbbbf6dd458b1859881f4c7e6da936158f77d61ab265", + "sha256": "2bc4b4ecddd75309300d8096f781c0e3280ca1ef85beda558d33fcbedc2eead4", "url": "https://pub.dev" }, "source": "hosted", - "version": "0.5.6" + "version": "0.6.0" }, "test_descriptor": { "dependency": "direct dev", @@ -734,11 +734,11 @@ "dependency": "transitive", "description": { "name": "vm_service", - "sha256": "c538be99af830f478718b51630ec1b6bee5e74e52c8a802d328d9e71d35d2583", + "sha256": "a2662fb1f114f4296cf3f5a50786a2d888268d7776cf681aa17d660ffa23b246", "url": "https://pub.dev" }, "source": "hosted", - "version": "11.10.0" + "version": "14.0.0" }, "watcher": { "dependency": "direct main", @@ -792,6 +792,6 @@ } }, "sdks": { - "dart": ">=3.0.0 <4.0.0" + "dart": ">=3.1.0 <4.0.0" } } diff --git a/pkgs/development/tools/misc/dart-sass/update.sh b/pkgs/development/tools/misc/dart-sass/update.sh new file mode 100755 index 0000000000000..595349e1387c2 --- /dev/null +++ b/pkgs/development/tools/misc/dart-sass/update.sh @@ -0,0 +1,45 @@ +#!/usr/bin/env nix-shell +#!nix-shell -i bash -p yq ripgrep common-updater-scripts dart + +set -xeu -o pipefail + +PACKAGE_DIR="$(realpath "$(dirname "$0")")" +cd "$PACKAGE_DIR/.." +while ! test -f default.nix; do cd .. ; done +NIXPKGS_DIR="$PWD" + +dart_sass_version="$( + list-git-tags --url=https://github.com/sass/dart-sass \ + | rg '^\d' \ + | sort --version-sort \ + | tail -n1 +)" + +embedded_protocol_version="$( + list-git-tags --url=https://github.com/sass/sass \ + | rg '^embedded-protocol-(.*)' -r '$1' \ + | sort --version-sort \ + | tail -n1 +)" + +cd "$NIXPKGS_DIR" +update-source-version dart-sass "$dart_sass_version" +update-source-version dart-sass "$embedded_protocol_version" \ + --version-key=embedded-protocol-version \ + --source-key=embedded-protocol + +TMPDIR="$(mktemp -d)" +cd "$TMPDIR" + +src="$(nix-build --no-link "$NIXPKGS_DIR" -A dart-sass.src)" +cp $src/pubspec.* . + +# Maybe one day upstream will ship a pubspec.lock, +# until then we must generate a fresh one +if ! test -f pubspec.lock; then + dart pub update +fi + +yq . pubspec.lock > "$PACKAGE_DIR/pubspec.lock.json" + +rm -rf "$TMPDIR" diff --git a/pkgs/development/tools/misc/devspace/default.nix b/pkgs/development/tools/misc/devspace/default.nix index af538e31f4fdc..198e15370bf8f 100644 --- a/pkgs/development/tools/misc/devspace/default.nix +++ b/pkgs/development/tools/misc/devspace/default.nix @@ -7,13 +7,13 @@ buildGoModule rec { pname = "devspace"; - version = "6.3.8"; + version = "6.3.10"; src = fetchFromGitHub { owner = "devspace-sh"; repo = "devspace"; rev = "v${version}"; - hash = "sha256-hB5foVVWVANX+Nmdl8layK5B08NQ11nIqt/d2du4bkQ="; + hash = "sha256-ExVetF5YP9gf5ifBsdPow7KA867+4iOxe/0OwZwctoc="; }; vendorHash = null; diff --git a/pkgs/development/tools/misc/edb/default.nix b/pkgs/development/tools/misc/edb/default.nix index 2203863264f34..fdde4064698ce 100644 --- a/pkgs/development/tools/misc/edb/default.nix +++ b/pkgs/development/tools/misc/edb/default.nix @@ -3,14 +3,14 @@ mkDerivation rec { pname = "edb"; - version = "1.3.0"; + version = "1.4.0"; src = fetchFromGitHub { owner = "eteran"; repo = "edb-debugger"; - rev = "1.3.0"; + rev = version; fetchSubmodules = true; - sha256 = "fFUau8XnsRFjC83HEsqyhrwCCBOfDmV6oACf3txm7O8="; + hash = "sha256-1Q0eZS05L4sxzcPvEFdEaobO7JYHRu98Yf+n3ZnBi+E="; }; nativeBuildInputs = [ cmake pkg-config ]; @@ -26,12 +26,10 @@ mkDerivation rec { # The build script checks for the presence of .git to determine whether # submodules were fetched and will throw an error if it's not there. # Avoid using leaveDotGit in the fetchFromGitHub options as it is non-deterministic. - mkdir -p src/qhexview/.git + mkdir -p src/qhexview/.git lib/gdtoa-desktop/.git # Change default optional terminal program path to one that is more likely to work on NixOS. substituteInPlace ./src/Configuration.cpp --replace "/usr/bin/xterm" "xterm"; - - sed '1i#include <memory>' -i include/{RegisterViewModelBase,State,IState}.h # gcc12 ''; meta = with lib; { diff --git a/pkgs/development/tools/misc/editorconfig-checker/default.nix b/pkgs/development/tools/misc/editorconfig-checker/default.nix index 57e7e79dfd3d4..699f6c91978c6 100644 --- a/pkgs/development/tools/misc/editorconfig-checker/default.nix +++ b/pkgs/development/tools/misc/editorconfig-checker/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "editorconfig-checker"; - version = "2.7.2"; + version = "2.8.0"; src = fetchFromGitHub { owner = "editorconfig-checker"; repo = "editorconfig-checker"; rev = version; - hash = "sha256-ktZeBj5feJMf4XR4hybKdNrNCIrQD6KPetZffAZjwqI="; + hash = "sha256-CVstdtFPt/OlvJE27O+CqqDpUqp9bQl18IGyf8nputM="; }; - vendorHash = "sha256-dhvRZ+AYSmSzHsf3yOYBSvZbw7dfwQiILu+VSUX8N3s="; + vendorHash = "sha256-t2h9jtGfips+cpN1ckVhVgpg4egIYVXd89ahyDzV060="; doCheck = false; diff --git a/pkgs/development/tools/misc/fzf-make/default.nix b/pkgs/development/tools/misc/fzf-make/default.nix index 433ec1073ae79..ec59149f5260b 100644 --- a/pkgs/development/tools/misc/fzf-make/default.nix +++ b/pkgs/development/tools/misc/fzf-make/default.nix @@ -10,16 +10,16 @@ rustPlatform.buildRustPackage rec { pname = "fzf-make"; - version = "0.18.0"; + version = "0.22.0"; src = fetchFromGitHub { owner = "kyu08"; repo = "fzf-make"; rev = "v${version}"; - hash = "sha256-6ijvj37BFPlFxd2SSe+X8hbYBGgex9IlpIhh1eQZUtM="; + hash = "sha256-MeJRXvMshhnNWNkEtOfxKMLLqoLjOREuDGcRHTnOxS8="; }; - cargoHash = "sha256-d2O4H9gKQIDH8jhBP36Ra/hOi7SDSoJRI28lJj/PG3U="; + cargoHash = "sha256-pHunUez3bsGwcSuQzx3DEDSKxx6UlUcuU35frEsc0+8="; nativeBuildInputs = [ makeBinaryWrapper ]; diff --git a/pkgs/development/tools/misc/gdbgui/default.nix b/pkgs/development/tools/misc/gdbgui/default.nix index 523cd85efb6ac..d42639892062a 100644 --- a/pkgs/development/tools/misc/gdbgui/default.nix +++ b/pkgs/development/tools/misc/gdbgui/default.nix @@ -12,7 +12,7 @@ buildPythonApplication rec { pname = "gdbgui"; - version = "0.15.1.0"; + version = "0.15.2.0"; buildInputs = [ gdb ]; propagatedBuildInputs = [ @@ -25,7 +25,7 @@ buildPythonApplication rec { src = fetchPypi { inherit pname version; - sha256 = "sha256-YcD3om7N6yddm02It6/fjXDsVHG0Cs46fdGof0PMJXM="; + sha256 = "sha256-vmMlRmjFqhs3Vf+IU9IDtJzt4dZ0yIOmXIVOx5chZPA="; }; postPatch = '' diff --git a/pkgs/development/tools/misc/gef/default.nix b/pkgs/development/tools/misc/gef/default.nix index 1893d7ef0b2ee..ddd1bf746e6c0 100644 --- a/pkgs/development/tools/misc/gef/default.nix +++ b/pkgs/development/tools/misc/gef/default.nix @@ -21,13 +21,13 @@ let in stdenv.mkDerivation rec { pname = "gef"; - version = "2023.08"; + version = "2024.01"; src = fetchFromGitHub { owner = "hugsy"; repo = "gef"; rev = version; - sha256 = "sha256-MqpII3jhSc6aP/WQDktom2wxAvCkxCwfs1AFWij5J7A="; + sha256 = "sha256-uSUr2NFvj7QIlvG3RWYm7A9Xx7a4JYkbAQld7c7+C7g="; }; dontBuild = true; diff --git a/pkgs/development/tools/misc/hydra/unstable.nix b/pkgs/development/tools/misc/hydra/unstable.nix index 0877b49912659..3d5d81452af3d 100644 --- a/pkgs/development/tools/misc/hydra/unstable.nix +++ b/pkgs/development/tools/misc/hydra/unstable.nix @@ -43,7 +43,6 @@ , cacert , glibcLocales , fetchFromGitHub -, fetchpatch2 , nixosTests }: @@ -133,17 +132,6 @@ stdenv.mkDerivation rec { hash = "sha256-hIXRgu2MGqFYCALDKAiP+8lE859zftRe4OVIgGOTkvc="; }; - patches = [ - # hydra-eval-jobs: don't use restrict-eval for Flakes - # https://github.com/NixOS/hydra/pull/1257 - # should be removed when https://github.com/NixOS/nix/pull/9547 - # lands in the nix version used by hydra - (fetchpatch2 { - url = "https://github.com/NixOS/hydra/commit/9370b0ef977bff7e84ac07a81a0e31e75989276b.patch"; - hash = "sha256-BRenC0lpWPgzfx42MPJBQ9VBamh5hZXuuVe6TXYKkdE="; - }) - ]; - buildInputs = [ unzip libpqxx diff --git a/pkgs/development/tools/misc/kool/default.nix b/pkgs/development/tools/misc/kool/default.nix index 5b326beb1efc4..f1d4b2b746548 100644 --- a/pkgs/development/tools/misc/kool/default.nix +++ b/pkgs/development/tools/misc/kool/default.nix @@ -7,16 +7,16 @@ buildGoModule rec { pname = "kool"; - version = "2.2.0"; + version = "3.0.0"; src = fetchFromGitHub { owner = "kool-dev"; repo = "kool"; rev = version; - hash = "sha256-YVgUKA7bMcncZDYaxaN2kCbE3JUmM9aM3GoQkOXEWpA="; + hash = "sha256-+vdizU2/q2nrEanpRPy1scgfTYh/I7feW4jz8efelWY="; }; - vendorHash = "sha256-zsrqppHl7Z8o+J1SzZnv1jOdPO04JaF1K38a//+uAxU="; + vendorHash = "sha256-PmS96KVhe9TDmtYBx2hROLCbGMQ0OY3MN405dUmxPzk="; ldflags = [ "-s" diff --git a/pkgs/development/tools/misc/lttng-ust/default.nix b/pkgs/development/tools/misc/lttng-ust/default.nix index 0c19b59c5c35e..b1fb9c83e8d0e 100644 --- a/pkgs/development/tools/misc/lttng-ust/default.nix +++ b/pkgs/development/tools/misc/lttng-ust/default.nix @@ -1,4 +1,4 @@ import ./generic.nix { - version = "2.13.6"; - sha256 = "sha256-5+BFlt1zrHqpnifNAA+UnbsP7VG9KQmfmwiiXB3wztU="; + version = "2.13.7"; + sha256 = "sha256-X7TxfDB8jBt5xoVh6JvpVi0H50Jb9A5yjE1mdVNCpes="; } diff --git a/pkgs/development/tools/misc/n98-magerun2/default.nix b/pkgs/development/tools/misc/n98-magerun2/default.nix index 6aabcbffbb66f..c04b3840a4375 100644 --- a/pkgs/development/tools/misc/n98-magerun2/default.nix +++ b/pkgs/development/tools/misc/n98-magerun2/default.nix @@ -9,11 +9,11 @@ stdenv.mkDerivation (finalAttrs: { pname = "n98-magerun2"; - version = "7.2.0"; + version = "7.3.1"; src = fetchurl { url = "https://github.com/netz98/n98-magerun2/releases/download/${finalAttrs.version}/n98-magerun2.phar"; - hash = "sha256-w+58TTyoS44Ouaz6KFIJLhSl/UeF1I7cSznlZH6fLXw="; + hash = "sha256-5G3sfyw8C3BwRqnK2o3upJTI/pENyaFCiMC4XGOkJT4="; }; dontUnpack = true; diff --git a/pkgs/development/tools/misc/opengrok/default.nix b/pkgs/development/tools/misc/opengrok/default.nix index 73f54dc24b8ed..a2ade07c21c43 100644 --- a/pkgs/development/tools/misc/opengrok/default.nix +++ b/pkgs/development/tools/misc/opengrok/default.nix @@ -2,12 +2,12 @@ stdenv.mkDerivation rec { pname = "opengrok"; - version = "1.13.1"; + version = "1.13.2"; # binary distribution src = fetchurl { url = "https://github.com/oracle/opengrok/releases/download/${version}/${pname}-${version}.tar.gz"; - hash = "sha256-3/BBLPoYX1/ft3MGiJD9OPtkB2PJM7bXkGRuXxTToXI="; + hash = "sha256-Er6f1KgMZ4e/o3TJkw6z96rxBGQ/KEc9gGI2W6m+b8U="; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/development/tools/misc/patchelf/0.13.nix b/pkgs/development/tools/misc/patchelf/0.13.nix deleted file mode 100644 index 0111a4b065c47..0000000000000 --- a/pkgs/development/tools/misc/patchelf/0.13.nix +++ /dev/null @@ -1,23 +0,0 @@ -{ stdenv, fetchurl, patchelf }: - -# Note: this package is used for bootstrapping fetchurl, and thus -# cannot use fetchpatch! All mutable patches (generated by GitHub or -# cgit) that are needed here should be included directly in Nixpkgs as -# files. - -stdenv.mkDerivation rec { - pname = "patchelf"; - version = "0.13.1"; - - src = fetchurl { - url = "https://github.com/NixOS/${pname}/releases/download/${version}/${pname}-${version}.tar.bz2"; - sha256 = "sha256-OeiuzNdJXVTfCU0rSnwIAQ/3d3A2+q8k8o4Hd30VmOI="; - }; - - setupHook = [ ./setup-hook.sh ]; - - # fails 8 out of 24 tests, problems when loading libc.so.6 - doCheck = stdenv.name == "stdenv-linux"; - - inherit (patchelf) meta; -} diff --git a/pkgs/development/tools/misc/patchelf/unstable.nix b/pkgs/development/tools/misc/patchelf/unstable.nix index d0deaa76fc5f9..a4061855d9973 100644 --- a/pkgs/development/tools/misc/patchelf/unstable.nix +++ b/pkgs/development/tools/misc/patchelf/unstable.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "patchelf"; - version = "unstable-2023-09-27"; + version = "unstable-2024-01-15"; src = fetchFromGitHub { owner = "NixOS"; repo = "patchelf"; - rev = "917ea45b79de04f69059f42a8e2621f7caeae1c9"; - sha256 = "sha256-pP/DBhsYFpYQ7RqB4+1Iy9B1jPlC1rNT3aZhhr1Z9EU="; + rev = "7c2f768bf9601268a4e71c2ebe91e2011918a70f"; + sha256 = "sha256-PPXqKY2hJng4DBVE0I4xshv/vGLUskL7jl53roB8UdU="; }; # Drop test that fails on musl (?) diff --git a/pkgs/development/tools/misc/reviewdog/default.nix b/pkgs/development/tools/misc/reviewdog/default.nix index 42455639bb571..f3e6a8e8d67e3 100644 --- a/pkgs/development/tools/misc/reviewdog/default.nix +++ b/pkgs/development/tools/misc/reviewdog/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "reviewdog"; - version = "0.16.0"; + version = "0.17.0"; src = fetchFromGitHub { owner = pname; repo = pname; rev = "v${version}"; - hash = "sha256-aHxK1Wu6AHTYhhbW67e4Yb/uOArwsiZnW8qHXHFCu2w="; + hash = "sha256-zr98hzWU27d+HCKvzTch7FkpUOWkHvpuMIq2cfWNRHQ="; }; - vendorHash = "sha256-htBy+ie1RjlWkr5z3BA9us5z5VxLtl4q1pyiESsyMFY="; + vendorHash = "sha256-S5SEM6EFXI2Vig8ze5kGOCIL5bLF6CMy/TKV+/3zAjI="; doCheck = false; diff --git a/pkgs/development/tools/misc/rsass/default.nix b/pkgs/development/tools/misc/rsass/default.nix index da24ac06ca6dd..1804c1301230e 100644 --- a/pkgs/development/tools/misc/rsass/default.nix +++ b/pkgs/development/tools/misc/rsass/default.nix @@ -2,15 +2,15 @@ rustPlatform.buildRustPackage rec { pname = "rsass"; - version = "0.28.0"; + version = "0.28.8"; src = fetchCrate { pname = "rsass-cli"; inherit version; - hash = "sha256-hBYZB/Jyzd89dylZn2tYdHr0IXCFgJi9TnvuoVqCR1A="; + hash = "sha256-eloTe7UHcPPmHEsGnfj3nIbZbBxSMFZdaSm5LpOh1S4="; }; - cargoHash = "sha256-nVTYTjmHB/z5M5AyojbsuZNCa3JCiADWrgV5eb3bcUE="; + cargoHash = "sha256-57vqVKqwQOEB33cSzGiZwadTDi7EyBBRAS4X9Euwp5Q="; meta = with lib; { description = "Sass reimplemented in rust with nom"; diff --git a/pkgs/development/tools/misc/rsonpath/default.nix b/pkgs/development/tools/misc/rsonpath/default.nix index 76d6e4d4291ca..26b25b1b5d949 100644 --- a/pkgs/development/tools/misc/rsonpath/default.nix +++ b/pkgs/development/tools/misc/rsonpath/default.nix @@ -5,16 +5,16 @@ rustPlatform.buildRustPackage rec { pname = "rsonpath"; - version = "0.8.4"; + version = "0.8.6"; src = fetchFromGitHub { owner = "v0ldek"; repo = "rsonpath"; rev = "v${version}"; - hash = "sha256-V7Ir1FGKjKYu/J2KSBaDwLdH/MHTS+aChHWcrVTu4dY="; + hash = "sha256-p1cbxEvnV5vR1fznNbglHfKa53DboIFJqEWAXBLoQ+s="; }; - cargoHash = "sha256-eiYUlHA4vK/zhfULwekt3dRVx//u5mrQ6tRdQh0tmTc="; + cargoHash = "sha256-rVJbrHsbSF8ZF44gmCUFxlGGhloC/kLBT5vSJjglxHE="; cargoBuildFlags = [ "-p=rsonpath" ]; cargoTestFlags = cargoBuildFlags; diff --git a/pkgs/development/tools/misc/runme/default.nix b/pkgs/development/tools/misc/runme/default.nix index 6e6914fbf1561..c0f305a591e34 100644 --- a/pkgs/development/tools/misc/runme/default.nix +++ b/pkgs/development/tools/misc/runme/default.nix @@ -12,16 +12,16 @@ buildGoModule rec { pname = "runme"; - version = "2.0.7"; + version = "2.2.2"; src = fetchFromGitHub { owner = "stateful"; repo = "runme"; rev = "v${version}"; - hash = "sha256-ip2td0PEMga7Egd/YEGdpoUV4tnNI27BUDPYynpFhhc="; + hash = "sha256-JEKfUrXCN2cvoVs2bScq1v/DfmqaUoew3PyGnNaTKN8="; }; - vendorHash = "sha256-PLDsea/o067ifiX0RKFC7gDpORLVEQ0DV6sdBzzQCTs="; + vendorHash = "sha256-+g6vEgA+vbGzLnotmhk0gp1IcY3zpF71TdoB8d84W6A="; nativeBuildInputs = [ installShellFiles diff --git a/pkgs/development/tools/misc/sccache/default.nix b/pkgs/development/tools/misc/sccache/default.nix index cd258f003cb72..5d19c21ee2216 100644 --- a/pkgs/development/tools/misc/sccache/default.nix +++ b/pkgs/development/tools/misc/sccache/default.nix @@ -8,17 +8,17 @@ }: rustPlatform.buildRustPackage rec { - version = "0.7.5"; + version = "0.7.6"; pname = "sccache"; src = fetchFromGitHub { owner = "mozilla"; repo = "sccache"; rev = "v${version}"; - sha256 = "sha256-rql5Nj/w7cNaO6UKK96vYYE2E19RIiCHYHTnbW+U4n8="; + sha256 = "sha256-dIUwooXphjXpFMZXpwQMSvXRvVt/y6J5X7oCrBBSvBM="; }; - cargoHash = "sha256-VdI39DgQrUZhoawMqBC6ngTvldW+QbDjMjxjjbH9G1A="; + cargoHash = "sha256-GDODIAyTIZUHw2tUEQfNnnPH2S9pFHIjYEZLpM5E52A="; nativeBuildInputs = [ pkg-config diff --git a/pkgs/development/tools/misc/scip/default.nix b/pkgs/development/tools/misc/scip/default.nix index d960292641fe0..176ddccbe34e1 100644 --- a/pkgs/development/tools/misc/scip/default.nix +++ b/pkgs/development/tools/misc/scip/default.nix @@ -7,13 +7,13 @@ buildGoModule rec { pname = "scip"; - version = "0.3.2"; + version = "0.3.3"; src = fetchFromGitHub { owner = "sourcegraph"; repo = "scip"; rev = "v${version}"; - hash = "sha256-lZ3W2Z69P5QQN+PgF9+Apj/uEXWaTS+5QOg17m1mGPU="; + hash = "sha256-aSApi6fEKQP5bpuda2Zz6i/5xkyH+mxch803toJsZm8="; }; vendorHash = "sha256-3Tq2cexcxHjaH6WIz2hneE1QeBSGoMINBncKbqxODxQ="; diff --git a/pkgs/development/tools/misc/slint-lsp/default.nix b/pkgs/development/tools/misc/slint-lsp/default.nix index ac26ead01cff1..3fa33bbcb8da7 100644 --- a/pkgs/development/tools/misc/slint-lsp/default.nix +++ b/pkgs/development/tools/misc/slint-lsp/default.nix @@ -25,14 +25,14 @@ let in rustPlatform.buildRustPackage rec { pname = "slint-lsp"; - version = "1.3.2"; + version = "1.4.0"; src = fetchCrate { inherit pname version; - sha256 = "sha256-zNTel91c1ECg4z7xIu37GcSWHTxTKtxpGjH3TpiFQ1k="; + sha256 = "sha256-ZX8ylDDyOWwEcupNg7u0RvmsKMC4RZNaKPg04PaCo3w="; }; - cargoHash = "sha256-pT3z6t1W/DitH/GJJIJhQawslodKzIkCyO0yd9OlvAg="; + cargoHash = "sha256-BxiN2/PItU29H8btX5bjwfd9C6p8AEvxJunM8lMu3SI="; nativeBuildInputs = [ cmake pkg-config fontconfig ]; buildInputs = rpathLibs ++ [ xorg.libxcb.dev ] diff --git a/pkgs/development/tools/misc/strace/default.nix b/pkgs/development/tools/misc/strace/default.nix index 591eaeaa1ae2e..d851aa217b5f8 100644 --- a/pkgs/development/tools/misc/strace/default.nix +++ b/pkgs/development/tools/misc/strace/default.nix @@ -1,12 +1,12 @@ -{ lib, stdenv, fetchurl, perl, libunwind, buildPackages, gitUpdater }: +{ lib, stdenv, fetchurl, perl, libunwind, buildPackages, gitUpdater, elfutils }: stdenv.mkDerivation rec { pname = "strace"; - version = "6.6"; + version = "6.7"; src = fetchurl { url = "https://strace.io/files/${version}/${pname}-${version}.tar.xz"; - sha256 = "sha256-QhtBhsBrcFFj5k3IXycevc9nZgr4ZnKDFH1ehZ/IqWw="; + sha256 = "sha256-IJAgHho/8yhG9P5CHBFjsV9EC7OOMTVdCfgtOUmSKvc="; }; depsBuildBuild = [ buildPackages.stdenv.cc ]; @@ -14,7 +14,7 @@ stdenv.mkDerivation rec { # On RISC-V platforms, LLVM's libunwind implementation is unsupported by strace. # The build will silently fall back and -k will not work on RISC-V. - buildInputs = [ libunwind ]; # support -k + buildInputs = [ libunwind elfutils ]; # support -k and -kk configureFlags = [ "--enable-mpers=check" ]; diff --git a/pkgs/development/tools/misc/terraform-ls/default.nix b/pkgs/development/tools/misc/terraform-ls/default.nix index b97f9b2221853..5887228e088f3 100644 --- a/pkgs/development/tools/misc/terraform-ls/default.nix +++ b/pkgs/development/tools/misc/terraform-ls/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "terraform-ls"; - version = "0.32.4"; + version = "0.32.6"; src = fetchFromGitHub { owner = "hashicorp"; repo = pname; rev = "v${version}"; - hash = "sha256-+z7Jg55BP9E7fwEYVnLY1lw06tizjaUPguKmqrfJ8jY="; + hash = "sha256-+1nmxjR1iVtQXjdsqXaYTh8kLGq9gqSDjt1drvR9KoY="; }; - vendorHash = "sha256-v0dESbGsafT+4C6pWhmNb4NT4m+kmtV+ZBld4x2TfJI="; + vendorHash = "sha256-8taGEDJ+Qtw/4eOWYiWZmEbmCwqcFXYh3x/9wR3oBJ8="; ldflags = [ "-s" "-w" ]; diff --git a/pkgs/development/tools/misc/texlab/default.nix b/pkgs/development/tools/misc/texlab/default.nix index 9e6b2bb850f74..4756be84a8606 100644 --- a/pkgs/development/tools/misc/texlab/default.nix +++ b/pkgs/development/tools/misc/texlab/default.nix @@ -15,16 +15,16 @@ let in rustPlatform.buildRustPackage rec { pname = "texlab"; - version = "5.12.1"; + version = "5.12.3"; src = fetchFromGitHub { owner = "latex-lsp"; repo = "texlab"; rev = "refs/tags/v${version}"; - hash = "sha256-/M6j33KNX4leLPJg6qLubejhjacXsd7NZ77wuGtdbw8="; + hash = "sha256-/QjaAzCPhXzsiRhnRRZcujmk1C9IONYlMfjp/a1iIDA="; }; - cargoHash = "sha256-xslsj5mE7NOZYVwuxJ06hZAUWS3mhgzrl73P47mjkTY="; + cargoHash = "sha256-VDRLbhgQkPkeTpQxRsq8QEU53Zd4b5F0phoq2cAWIK8="; outputs = [ "out" ] ++ lib.optional (!isCross) "man"; diff --git a/pkgs/development/tools/misc/usbsdmux/default.nix b/pkgs/development/tools/misc/usbsdmux/default.nix index 5fda623d819fe..31d6566a42149 100644 --- a/pkgs/development/tools/misc/usbsdmux/default.nix +++ b/pkgs/development/tools/misc/usbsdmux/default.nix @@ -2,11 +2,11 @@ python3Packages.buildPythonApplication rec { pname = "usbsdmux"; - version = "0.2.1"; + version = "24.1.1"; src = fetchPypi { inherit pname version; - sha256 = "sha256-gCxwR5jxzkH22B6nxBwAd0HpwWMIj/zp5VROJ0IWq7c="; + sha256 = "sha256-OtGgToDGUr6pBu9+LS/DxaYw/9+Pd6jPhxVDAM22HB4="; }; # usbsdmux is not meant to be used as an importable module and has no tests diff --git a/pkgs/development/tools/misc/ycmd/default.nix b/pkgs/development/tools/misc/ycmd/default.nix index aeca3c437ff4d..ae741234a8e26 100644 --- a/pkgs/development/tools/misc/ycmd/default.nix +++ b/pkgs/development/tools/misc/ycmd/default.nix @@ -1,5 +1,4 @@ { stdenv, lib, fetchFromGitHub, cmake, ninja, python -, withGocode ? true, gocode , withGodef ? true, godef , withGotools? true, gotools , withTypescript ? true, typescript @@ -63,10 +62,6 @@ stdenv.mkDerivation { mkdir -p $out/lib/ycmd/third_party cp -r third_party/* $out/lib/ycmd/third_party/ - '' + lib.optionalString withGocode '' - TARGET=$out/lib/ycmd/third_party/gocode - mkdir -p $TARGET - ln -sf ${gocode}/bin/gocode $TARGET '' + lib.optionalString withGodef '' TARGET=$out/lib/ycmd/third_party/godef mkdir -p $TARGET diff --git a/pkgs/development/tools/mix2nix/default.nix b/pkgs/development/tools/mix2nix/default.nix index 694afbc812076..7c2d773884d9a 100644 --- a/pkgs/development/tools/mix2nix/default.nix +++ b/pkgs/development/tools/mix2nix/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "mix2nix"; - version = "0.1.8"; + version = "0.1.9"; src = fetchFromGitHub { owner = "ydlr"; repo = "mix2nix"; rev = version; - hash = "sha256-iWy5q6ERzg8hRZs+bFtR6drZ9yI8Qh1v+47q3q2fFTM="; + hash = "sha256-Wh3KFp1gNDOKOG/DZdftmgy/M+67ZGfdj6W3ETQpX/8="; }; nativeBuildInputs = [ elixir ]; diff --git a/pkgs/development/tools/mongosh/package-lock.json b/pkgs/development/tools/mongosh/package-lock.json index f4779128f3a02..4c59e94cee8ed 100644 --- a/pkgs/development/tools/mongosh/package-lock.json +++ b/pkgs/development/tools/mongosh/package-lock.json @@ -1,15 +1,15 @@ { "name": "mongosh", - "version": "2.1.1", + "version": "2.1.3", "lockfileVersion": 3, "requires": true, "packages": { "": { "name": "mongosh", - "version": "2.1.1", + "version": "2.1.3", "license": "Apache-2.0", "dependencies": { - "@mongosh/cli-repl": "2.1.1" + "@mongosh/cli-repl": "2.1.3" }, "bin": { "mongosh": "bin/mongosh.js" @@ -20,7 +20,7 @@ }, "node_modules/@ampproject/remapping": { "version": "2.2.1", - "resolved": "https://registry.npmjs.org/@ampproject/remapping/-/remapping-2.2.1.tgz", + "resolved": "https://registry.npmmirror.com/@ampproject/remapping/-/remapping-2.2.1.tgz", "integrity": "sha512-lFMjJTrFL3j7L9yBxwYfCq2k6qqwHyzuUl/XBnif78PWTJYyL/dfowQHWE3sp6U6ZzqWiiIZnpTMO96zhkjwtg==", "dependencies": { "@jridgewell/gen-mapping": "^0.3.0", @@ -32,7 +32,7 @@ }, "node_modules/@aws-crypto/crc32": { "version": "3.0.0", - "resolved": "https://registry.npmjs.org/@aws-crypto/crc32/-/crc32-3.0.0.tgz", + "resolved": "https://registry.npmmirror.com/@aws-crypto/crc32/-/crc32-3.0.0.tgz", "integrity": "sha512-IzSgsrxUcsrejQbPVilIKy16kAT52EwB6zSaI+M3xxIhKh5+aldEyvI+z6erM7TCLB2BJsFrtHjp6/4/sr+3dA==", "dependencies": { "@aws-crypto/util": "^3.0.0", @@ -42,12 +42,12 @@ }, "node_modules/@aws-crypto/crc32/node_modules/tslib": { "version": "1.14.1", - "resolved": "https://registry.npmjs.org/tslib/-/tslib-1.14.1.tgz", + "resolved": "https://registry.npmmirror.com/tslib/-/tslib-1.14.1.tgz", "integrity": "sha512-Xni35NKzjgMrwevysHTCArtLDpPvye8zV/0E4EyYn43P7/7qvQwPh9BGkHewbMulVntbigmcT7rdX3BNo9wRJg==" }, "node_modules/@aws-crypto/ie11-detection": { "version": "3.0.0", - "resolved": "https://registry.npmjs.org/@aws-crypto/ie11-detection/-/ie11-detection-3.0.0.tgz", + "resolved": "https://registry.npmmirror.com/@aws-crypto/ie11-detection/-/ie11-detection-3.0.0.tgz", "integrity": "sha512-341lBBkiY1DfDNKai/wXM3aujNBkXR7tq1URPQDL9wi3AUbI80NR74uF1TXHMm7po1AcnFk8iu2S2IeU/+/A+Q==", "dependencies": { "tslib": "^1.11.1" @@ -55,12 +55,12 @@ }, "node_modules/@aws-crypto/ie11-detection/node_modules/tslib": { "version": "1.14.1", - "resolved": "https://registry.npmjs.org/tslib/-/tslib-1.14.1.tgz", + "resolved": "https://registry.npmmirror.com/tslib/-/tslib-1.14.1.tgz", "integrity": "sha512-Xni35NKzjgMrwevysHTCArtLDpPvye8zV/0E4EyYn43P7/7qvQwPh9BGkHewbMulVntbigmcT7rdX3BNo9wRJg==" }, "node_modules/@aws-crypto/sha256-browser": { "version": "3.0.0", - "resolved": "https://registry.npmjs.org/@aws-crypto/sha256-browser/-/sha256-browser-3.0.0.tgz", + "resolved": "https://registry.npmmirror.com/@aws-crypto/sha256-browser/-/sha256-browser-3.0.0.tgz", "integrity": "sha512-8VLmW2B+gjFbU5uMeqtQM6Nj0/F1bro80xQXCW6CQBWgosFWXTx77aeOF5CAIAmbOK64SdMBJdNr6J41yP5mvQ==", "dependencies": { "@aws-crypto/ie11-detection": "^3.0.0", @@ -75,12 +75,12 @@ }, "node_modules/@aws-crypto/sha256-browser/node_modules/tslib": { "version": "1.14.1", - "resolved": "https://registry.npmjs.org/tslib/-/tslib-1.14.1.tgz", + "resolved": "https://registry.npmmirror.com/tslib/-/tslib-1.14.1.tgz", "integrity": "sha512-Xni35NKzjgMrwevysHTCArtLDpPvye8zV/0E4EyYn43P7/7qvQwPh9BGkHewbMulVntbigmcT7rdX3BNo9wRJg==" }, "node_modules/@aws-crypto/sha256-js": { "version": "3.0.0", - "resolved": "https://registry.npmjs.org/@aws-crypto/sha256-js/-/sha256-js-3.0.0.tgz", + "resolved": "https://registry.npmmirror.com/@aws-crypto/sha256-js/-/sha256-js-3.0.0.tgz", "integrity": "sha512-PnNN7os0+yd1XvXAy23CFOmTbMaDxgxXtTKHybrJ39Y8kGzBATgBFibWJKH6BhytLI/Zyszs87xCOBNyBig6vQ==", "dependencies": { "@aws-crypto/util": "^3.0.0", @@ -90,12 +90,12 @@ }, "node_modules/@aws-crypto/sha256-js/node_modules/tslib": { "version": "1.14.1", - "resolved": "https://registry.npmjs.org/tslib/-/tslib-1.14.1.tgz", + "resolved": "https://registry.npmmirror.com/tslib/-/tslib-1.14.1.tgz", "integrity": "sha512-Xni35NKzjgMrwevysHTCArtLDpPvye8zV/0E4EyYn43P7/7qvQwPh9BGkHewbMulVntbigmcT7rdX3BNo9wRJg==" }, "node_modules/@aws-crypto/supports-web-crypto": { "version": "3.0.0", - "resolved": "https://registry.npmjs.org/@aws-crypto/supports-web-crypto/-/supports-web-crypto-3.0.0.tgz", + "resolved": "https://registry.npmmirror.com/@aws-crypto/supports-web-crypto/-/supports-web-crypto-3.0.0.tgz", "integrity": "sha512-06hBdMwUAb2WFTuGG73LSC0wfPu93xWwo5vL2et9eymgmu3Id5vFAHBbajVWiGhPO37qcsdCap/FqXvJGJWPIg==", "dependencies": { "tslib": "^1.11.1" @@ -103,12 +103,12 @@ }, "node_modules/@aws-crypto/supports-web-crypto/node_modules/tslib": { "version": "1.14.1", - "resolved": "https://registry.npmjs.org/tslib/-/tslib-1.14.1.tgz", + "resolved": "https://registry.npmmirror.com/tslib/-/tslib-1.14.1.tgz", "integrity": "sha512-Xni35NKzjgMrwevysHTCArtLDpPvye8zV/0E4EyYn43P7/7qvQwPh9BGkHewbMulVntbigmcT7rdX3BNo9wRJg==" }, "node_modules/@aws-crypto/util": { "version": "3.0.0", - "resolved": "https://registry.npmjs.org/@aws-crypto/util/-/util-3.0.0.tgz", + "resolved": "https://registry.npmmirror.com/@aws-crypto/util/-/util-3.0.0.tgz", "integrity": "sha512-2OJlpeJpCR48CC8r+uKVChzs9Iungj9wkZrl8Z041DWEWvyIHILYKCPNzJghKsivj+S3mLo6BVc7mBNzdxA46w==", "dependencies": { "@aws-sdk/types": "^3.222.0", @@ -118,52 +118,53 @@ }, "node_modules/@aws-crypto/util/node_modules/tslib": { "version": "1.14.1", - "resolved": "https://registry.npmjs.org/tslib/-/tslib-1.14.1.tgz", + "resolved": "https://registry.npmmirror.com/tslib/-/tslib-1.14.1.tgz", "integrity": "sha512-Xni35NKzjgMrwevysHTCArtLDpPvye8zV/0E4EyYn43P7/7qvQwPh9BGkHewbMulVntbigmcT7rdX3BNo9wRJg==" }, "node_modules/@aws-sdk/client-cognito-identity": { - 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"resolved": "https://registry.npmjs.org/tunnel-agent/-/tunnel-agent-0.6.0.tgz", + "resolved": "https://registry.npmmirror.com/tunnel-agent/-/tunnel-agent-0.6.0.tgz", "integrity": "sha512-McnNiV1l8RYeY8tBgEpuodCC1mLUdbSN+CYBL7kJsJNInOP8UjDDEwdk6Mw60vdLLrr5NHKZhMAOSrR2NZuQ+w==", "optional": true, "dependencies": { @@ -5128,7 +4867,7 @@ }, "node_modules/type-is": { "version": "1.6.18", - "resolved": "https://registry.npmjs.org/type-is/-/type-is-1.6.18.tgz", + "resolved": "https://registry.npmmirror.com/type-is/-/type-is-1.6.18.tgz", "integrity": "sha512-TkRKr9sUTxEH8MdfuCSP7VizJyzRNMjj2J2do2Jr3Kym598JVdEksuzPQCnlFPW4ky9Q+iA+ma9BGm06XQBy8g==", "dependencies": { "media-typer": "0.3.0", @@ -5140,7 +4879,7 @@ }, "node_modules/unpipe": { "version": "1.0.0", - "resolved": "https://registry.npmjs.org/unpipe/-/unpipe-1.0.0.tgz", + "resolved": "https://registry.npmmirror.com/unpipe/-/unpipe-1.0.0.tgz", "integrity": "sha512-pjy2bYhSsufwWlKwPc+l3cN7+wuJlK6uz0YdJEOlQDbl6jo/YlPi4mb8agUkVC8BF7V8NuzeyPNqRksA3hztKQ==", "engines": { "node": ">= 0.8" @@ -5148,7 +4887,7 @@ }, "node_modules/untildify": { "version": "4.0.0", - "resolved": "https://registry.npmjs.org/untildify/-/untildify-4.0.0.tgz", + "resolved": "https://registry.npmmirror.com/untildify/-/untildify-4.0.0.tgz", "integrity": "sha512-KK8xQ1mkzZeg9inewmFVDNkg3l5LUhoq9kN6iWYB/CC9YMG8HA+c1Q8HwDe6dEX7kErrEVNVBO3fWsVq5iDgtw==", "engines": { "node": ">=8" @@ -5156,22 +4895,8 @@ }, "node_modules/update-browserslist-db": { "version": "1.0.13", - "resolved": "https://registry.npmjs.org/update-browserslist-db/-/update-browserslist-db-1.0.13.tgz", + "resolved": "https://registry.npmmirror.com/update-browserslist-db/-/update-browserslist-db-1.0.13.tgz", "integrity": "sha512-xebP81SNcPuNpPP3uzeW1NYXxI3rxyJzF3pD6sH4jE7o/IX+WtSpwnVU+qIsDPyk0d3hmFQ7mjqc6AtV604hbg==", - "funding": [ - { - "type": "opencollective", - "url": "https://opencollective.com/browserslist" - }, - { - "type": "tidelift", - "url": "https://tidelift.com/funding/github/npm/browserslist" - }, - { - "type": "github", - "url": "https://github.com/sponsors/ai" - } - ], "dependencies": { "escalade": "^3.1.1", "picocolors": "^1.0.0" @@ -5185,13 +4910,13 @@ }, "node_modules/util-deprecate": { "version": "1.0.2", - "resolved": "https://registry.npmjs.org/util-deprecate/-/util-deprecate-1.0.2.tgz", + "resolved": "https://registry.npmmirror.com/util-deprecate/-/util-deprecate-1.0.2.tgz", "integrity": "sha512-EPD5q1uXyFxJpCrLnCc1nHnq3gOa6DZBocAIiI2TaSCA7VCJ1UJDMagCzIkXNsUYfD1daK//LTEQ8xiIbrHtcw==", "optional": true }, "node_modules/utils-merge": { "version": "1.0.1", - "resolved": "https://registry.npmjs.org/utils-merge/-/utils-merge-1.0.1.tgz", + "resolved": "https://registry.npmmirror.com/utils-merge/-/utils-merge-1.0.1.tgz", "integrity": "sha512-pMZTvIkT1d+TFGvDOqodOclx0QWkkgi6Tdoa8gC8ffGAAqz9pzPTZWAybbsHHoED/ztMtkv/VoYTYyShUn81hA==", "engines": { "node": ">= 0.4.0" @@ -5199,7 +4924,7 @@ }, "node_modules/uuid": { "version": "8.3.2", - "resolved": "https://registry.npmjs.org/uuid/-/uuid-8.3.2.tgz", + "resolved": "https://registry.npmmirror.com/uuid/-/uuid-8.3.2.tgz", "integrity": "sha512-+NYs2QeMWy+GWFOEm9xnn6HCDp0l7QBD7ml8zLUmJ+93Q5NF0NocErnwkTkXVFNiX3/fpC6afS8Dhb/gz7R7eg==", "bin": { "uuid": "dist/bin/uuid" @@ -5207,7 +4932,7 @@ }, "node_modules/vary": { "version": "1.1.2", - "resolved": "https://registry.npmjs.org/vary/-/vary-1.1.2.tgz", + "resolved": "https://registry.npmmirror.com/vary/-/vary-1.1.2.tgz", "integrity": "sha512-BNGbWLfd0eUPabhkXUVm0j8uuvREyTh5ovRa/dyow/BqAbZJyC+5fU+IzQOzmAKzYqYRAISoRhdQr3eIZ/PXqg==", "engines": { "node": ">= 0.8" @@ -5215,7 +4940,7 @@ }, "node_modules/webidl-conversions": { "version": "7.0.0", - "resolved": "https://registry.npmjs.org/webidl-conversions/-/webidl-conversions-7.0.0.tgz", + "resolved": "https://registry.npmmirror.com/webidl-conversions/-/webidl-conversions-7.0.0.tgz", "integrity": "sha512-VwddBukDzu71offAQR975unBIGqfKZpM+8ZX6ySk8nYhVoo5CYaZyzt3YBvYtRtO+aoGlqxPg/B87NGVZ/fu6g==", "engines": { "node": ">=12" @@ -5223,7 +4948,7 @@ }, "node_modules/whatwg-url": { "version": "13.0.0", - "resolved": "https://registry.npmjs.org/whatwg-url/-/whatwg-url-13.0.0.tgz", + "resolved": "https://registry.npmmirror.com/whatwg-url/-/whatwg-url-13.0.0.tgz", "integrity": "sha512-9WWbymnqj57+XEuqADHrCJ2eSXzn8WXIW/YSGaZtb2WKAInQ6CHfaUUcTyyver0p8BDg5StLQq8h1vtZuwmOig==", "dependencies": { "tr46": "^4.1.1", @@ -5235,7 +4960,7 @@ }, "node_modules/which": { "version": "2.0.2", - "resolved": "https://registry.npmjs.org/which/-/which-2.0.2.tgz", + "resolved": "https://registry.npmmirror.com/which/-/which-2.0.2.tgz", "integrity": "sha512-BLI3Tl1TW3Pvl70l3yq3Y64i+awpwXqsGBYWkkqMtnbXgrMD+yj7rhW0kuEDxzJaYXGjEW5ogapKNMEKNMjibA==", "dependencies": { "isexe": "^2.0.0" @@ -5249,7 +4974,7 @@ }, "node_modules/win-export-certificate-and-key": { "version": "1.1.1", - "resolved": "https://registry.npmjs.org/win-export-certificate-and-key/-/win-export-certificate-and-key-1.1.1.tgz", + "resolved": "https://registry.npmmirror.com/win-export-certificate-and-key/-/win-export-certificate-and-key-1.1.1.tgz", "integrity": "sha512-wvF1DKlbt/PLOSdnKzIqv0Ipj+87n2VYOJFbkqBoN7l3l244reT7Lf6+Dnu86bYVWoVpq3ZZG417OLNHFnkP6A==", "hasInstallScript": true, "optional": true, @@ -5264,7 +4989,7 @@ }, "node_modules/wrap-ansi": { "version": "8.1.0", - "resolved": "https://registry.npmjs.org/wrap-ansi/-/wrap-ansi-8.1.0.tgz", + "resolved": "https://registry.npmmirror.com/wrap-ansi/-/wrap-ansi-8.1.0.tgz", "integrity": "sha512-si7QWI6zUMq56bESFvagtmzMdGOtoxfR+Sez11Mobfc7tm+VkUckk9bW2UeffTGVUbOksxmSw0AA2gs8g71NCQ==", "dependencies": { "ansi-styles": "^6.1.0", @@ -5273,15 +4998,12 @@ }, "engines": { "node": ">=12" - }, - "funding": { - "url": "https://github.com/chalk/wrap-ansi?sponsor=1" } }, "node_modules/wrap-ansi-cjs": { "name": "wrap-ansi", "version": "7.0.0", - "resolved": "https://registry.npmjs.org/wrap-ansi/-/wrap-ansi-7.0.0.tgz", + "resolved": "https://registry.npmmirror.com/wrap-ansi/-/wrap-ansi-7.0.0.tgz", "integrity": "sha512-YVGIj2kamLSTxw6NsZjoBxfSwsn0ycdesmc4p+Q21c5zPuZ1pl+NfxVdxPtdHvmNVOQ6XSYG4AUtyt/Fi7D16Q==", "dependencies": { "ansi-styles": "^4.0.0", @@ -5290,28 +5012,22 @@ }, "engines": { "node": ">=10" - }, - "funding": { - "url": "https://github.com/chalk/wrap-ansi?sponsor=1" } }, "node_modules/wrap-ansi-cjs/node_modules/ansi-styles": { "version": "4.3.0", - "resolved": "https://registry.npmjs.org/ansi-styles/-/ansi-styles-4.3.0.tgz", + "resolved": "https://registry.npmmirror.com/ansi-styles/-/ansi-styles-4.3.0.tgz", "integrity": "sha512-zbB9rCJAT1rbjiVDb2hqKFHNYLxgtk8NURxZ3IZwD3F6NtxbXZQCnnSi1Lkx+IDohdPlFp222wVALIheZJQSEg==", "dependencies": { "color-convert": "^2.0.1" }, "engines": { "node": ">=8" - }, - "funding": { - "url": "https://github.com/chalk/ansi-styles?sponsor=1" } }, "node_modules/wrap-ansi-cjs/node_modules/color-convert": { "version": "2.0.1", - "resolved": "https://registry.npmjs.org/color-convert/-/color-convert-2.0.1.tgz", + "resolved": "https://registry.npmmirror.com/color-convert/-/color-convert-2.0.1.tgz", "integrity": "sha512-RRECPsj7iu/xb5oKYcsFHSppFNnsj/52OVTRKb4zP5onXwVF3zVmmToNcOfGC+CRDpfK/U584fMg38ZHCaElKQ==", "dependencies": { "color-name": "~1.1.4" @@ -5322,17 +5038,17 @@ }, "node_modules/wrap-ansi-cjs/node_modules/color-name": { "version": "1.1.4", - "resolved": "https://registry.npmjs.org/color-name/-/color-name-1.1.4.tgz", + "resolved": "https://registry.npmmirror.com/color-name/-/color-name-1.1.4.tgz", "integrity": "sha512-dOy+3AuW3a2wNbZHIuMZpTcgjGuLU/uBL/ubcZF9OXbDo8ff4O8yVp5Bf0efS8uEoYo5q4Fx7dY9OgQGXgAsQA==" }, "node_modules/wrap-ansi-cjs/node_modules/emoji-regex": { "version": "8.0.0", - "resolved": "https://registry.npmjs.org/emoji-regex/-/emoji-regex-8.0.0.tgz", + "resolved": "https://registry.npmmirror.com/emoji-regex/-/emoji-regex-8.0.0.tgz", "integrity": "sha512-MSjYzcWNOA0ewAHpz0MxpYFvwg6yjy1NG3xteoqz644VCo/RPgnr1/GGt+ic3iJTzQ8Eu3TdM14SawnVUmGE6A==" }, "node_modules/wrap-ansi-cjs/node_modules/string-width": { "version": "4.2.3", - "resolved": "https://registry.npmjs.org/string-width/-/string-width-4.2.3.tgz", + "resolved": "https://registry.npmmirror.com/string-width/-/string-width-4.2.3.tgz", "integrity": "sha512-wKyQRQpjJ0sIp62ErSZdGsjMJWsap5oRNihHhu6G7JVO/9jIB6UyevL+tXuOqrng8j/cxKTWyWUwvSTriiZz/g==", "dependencies": { "emoji-regex": "^8.0.0", @@ -5345,54 +5061,45 @@ }, "node_modules/wrap-ansi/node_modules/ansi-regex": { "version": "6.0.1", - "resolved": "https://registry.npmjs.org/ansi-regex/-/ansi-regex-6.0.1.tgz", + "resolved": "https://registry.npmmirror.com/ansi-regex/-/ansi-regex-6.0.1.tgz", "integrity": "sha512-n5M855fKb2SsfMIiFFoVrABHJC8QtHwVx+mHWP3QcEqBHYienj5dHSgjbxtC0WEZXYt4wcD6zrQElDPhFuZgfA==", "engines": { "node": ">=12" - }, - "funding": { - "url": "https://github.com/chalk/ansi-regex?sponsor=1" } }, "node_modules/wrap-ansi/node_modules/ansi-styles": { "version": "6.2.1", - "resolved": "https://registry.npmjs.org/ansi-styles/-/ansi-styles-6.2.1.tgz", + "resolved": "https://registry.npmmirror.com/ansi-styles/-/ansi-styles-6.2.1.tgz", "integrity": "sha512-bN798gFfQX+viw3R7yrGWRqnrN2oRkEkUjjl4JNn4E8GxxbjtG3FbrEIIY3l8/hrwUwIeCZvi4QuOTP4MErVug==", "engines": { "node": ">=12" - }, - "funding": { - "url": "https://github.com/chalk/ansi-styles?sponsor=1" } }, "node_modules/wrap-ansi/node_modules/strip-ansi": { "version": "7.1.0", - "resolved": "https://registry.npmjs.org/strip-ansi/-/strip-ansi-7.1.0.tgz", + "resolved": "https://registry.npmmirror.com/strip-ansi/-/strip-ansi-7.1.0.tgz", "integrity": "sha512-iq6eVVI64nQQTRYq2KtEg2d2uU7LElhTJwsH4YzIHZshxlgZms/wIc4VoDQTlG/IvVIrBKG06CrZnp0qv7hkcQ==", "dependencies": { "ansi-regex": "^6.0.1" }, "engines": { "node": ">=12" - }, - "funding": { - "url": "https://github.com/chalk/strip-ansi?sponsor=1" } }, "node_modules/wrappy": { "version": "1.0.2", - "resolved": "https://registry.npmjs.org/wrappy/-/wrappy-1.0.2.tgz", + "resolved": "https://registry.npmmirror.com/wrappy/-/wrappy-1.0.2.tgz", "integrity": "sha512-l4Sp/DRseor9wL6EvV2+TuQn63dMkPjZ/sp9XkghTEbV9KlPS1xUsZ3u7/IQO4wxtcFB4bgpQPRcR3QCvezPcQ==", "optional": true }, "node_modules/yallist": { "version": "3.1.1", - "resolved": "https://registry.npmjs.org/yallist/-/yallist-3.1.1.tgz", + "resolved": "https://registry.npmmirror.com/yallist/-/yallist-3.1.1.tgz", "integrity": "sha512-a4UGQaWPH59mOXUYnAG2ewncQS4i4F43Tv3JoAM+s2VDAmS9NsK8GpDMLrCHPksFT7h3K6TOoUNn2pb7RoXx4g==" }, "node_modules/yargs-parser": { "version": "20.2.9", - "resolved": "https://registry.npmjs.org/yargs-parser/-/yargs-parser-20.2.9.tgz", + "resolved": "https://registry.npmmirror.com/yargs-parser/-/yargs-parser-20.2.9.tgz", "integrity": "sha512-y11nGElTIV+CT3Zv9t7VKl+Q3hTQoT9a1Qzezhhl6Rp21gJ/IVTW7Z3y9EWXhuUBC2Shnf+DX0antecpAwSP8w==", "engines": { "node": ">=10" diff --git a/pkgs/development/tools/mongosh/source.json b/pkgs/development/tools/mongosh/source.json index 091bbd27c998c..d8b801e9055d8 100644 --- a/pkgs/development/tools/mongosh/source.json +++ b/pkgs/development/tools/mongosh/source.json @@ -1,6 +1,6 @@ { - "version": "2.1.1", - "integrity": "sha512-2Gw9fJp2ebK2Gx7QT6sg7FCEpTfFlRib7hJkRhUO92/irGDTDtH6lYU45A4jRRMwgYVyjCfcfeWC11JQCSfsvg==", - "filename": "mongosh-2.1.1.tgz", - "deps": "sha256-F/ACpX5BsnPttrYRabWsTgUN6uABQ6RHdGc2h6qMbp8=" + "version": "2.1.3", + "integrity": "sha512-kyggXyuSbjsQDjabXvXlfXW6k7MD+hByNSn8Z30dAQd+OYeM63MvEZubav2+uQUIzCsSycBqYX9xH+4cssz9gQ==", + "filename": "mongosh-2.1.3.tgz", + "deps": "sha256-kuUahlM3QJKOrepzlZlapemgFmBcQDW83Zzgv5zCHOU=" } diff --git a/pkgs/development/tools/mysql-shell/default.nix b/pkgs/development/tools/mysql-shell/default.nix index ba362d65a237c..fe8ad46fe2f21 100644 --- a/pkgs/development/tools/mysql-shell/default.nix +++ b/pkgs/development/tools/mysql-shell/default.nix @@ -37,16 +37,16 @@ let in stdenv.mkDerivation (finalAttrs: { pname = "mysql-shell"; - version = "8.0.35"; + version = "8.0.36"; srcs = [ (fetchurl { url = "https://cdn.mysql.com//Downloads/MySQL-${lib.versions.majorMinor finalAttrs.version}/mysql-${finalAttrs.version}.tar.gz"; - hash = "sha256-kXxe04cE6ZIRGFzkviTjOowZyRJB7XOvQYGm840VdMI="; + hash = "sha256-9PJwa5WKinOA72yVjdlyMHvb7qRR76/DQuTEbim36d0="; }) (fetchurl { url = "https://cdn.mysql.com//Downloads/MySQL-Shell/mysql-shell-${finalAttrs.version}-src.tar.gz"; - hash = "sha256-2Dn/RR5BWHMsD/QzKYPo8tqyAQGmHCGwVl2+bzNfy5I="; + hash = "sha256-s0+7dbcLcgS8u/6p7vpVAV9sR2gf2j9VDnSCJvw77fQ="; }) ]; @@ -95,7 +95,7 @@ stdenv.mkDerivation (finalAttrs: { # Build MySQL echo "Building mysqlclient mysqlxclient" - cmake -DWITH_BOOST=system -DWITH_SYSTEM_LIBS=ON -DWITH_ROUTER=OFF -DWITH_UNIT_TESTS=OFF \ + cmake -DWITH_SYSTEM_LIBS=ON -DWITH_BOOST=system -DWITH_FIDO=system -DWITH_ROUTER=OFF -DWITH_UNIT_TESTS=OFF \ -DFORCE_UNSUPPORTED_COMPILER=1 -S ../mysql -B ../mysql/build cmake --build ../mysql/build --parallel ''${NIX_BUILD_CORES:-1} --target mysqlclient mysqlxclient diff --git a/pkgs/development/tools/mysql-shell/innovation.nix b/pkgs/development/tools/mysql-shell/innovation.nix index 6104aadf0492b..0755b2271c037 100644 --- a/pkgs/development/tools/mysql-shell/innovation.nix +++ b/pkgs/development/tools/mysql-shell/innovation.nix @@ -16,7 +16,6 @@ , libssh , zstd , lz4 -, boost , readline , libtirpc , rpcsvc-proto @@ -35,8 +34,8 @@ let pythonDeps = with python3.pkgs; [ certifi paramiko pyyaml ]; - mysqlShellVersion = "8.2.1"; - mysqlServerVersion = "8.2.0"; + mysqlShellVersion = "8.3.0"; + mysqlServerVersion = "8.3.0"; in stdenv.mkDerivation (finalAttrs: { pname = "mysql-shell-innovation"; @@ -45,11 +44,11 @@ stdenv.mkDerivation (finalAttrs: { srcs = [ (fetchurl { url = "https://cdn.mysql.com//Downloads/MySQL-${lib.versions.majorMinor mysqlServerVersion}/mysql-${mysqlServerVersion}.tar.gz"; - hash = "sha256-itPj8cWuIVS+Y4rPVW6JgfcC0FKsxZV+d23xciwhGXk="; + hash = "sha256-HyFJWgt6grJKRT1S4hU6gUs8pwTsz5mXZtVFvOUvOG4="; }) (fetchurl { url = "https://cdn.mysql.com//Downloads/MySQL-Shell/mysql-shell-${finalAttrs.version}-src.tar.gz"; - hash = "sha256-m6WdFow28bxW52q+m8PniZCU/1Ej4secdPQi8GKlziE="; + hash = "sha256-O0j/gvS9fR/xp9plytjj249H7LY/+eyst1IsFpy318U="; }) ]; @@ -71,7 +70,6 @@ stdenv.mkDerivation (finalAttrs: { ++ lib.optionals stdenv.isDarwin [ cctools DarwinTools ]; buildInputs = [ - boost curl libedit libssh @@ -98,7 +96,7 @@ stdenv.mkDerivation (finalAttrs: { # Build MySQL echo "Building mysqlclient mysqlxclient" - cmake -DWITH_BOOST=system -DWITH_SYSTEM_LIBS=ON -DWITH_ROUTER=OFF -DWITH_UNIT_TESTS=OFF \ + cmake -DWITH_SYSTEM_LIBS=ON -DWITH_FIDO=system -DWITH_ROUTER=OFF -DWITH_UNIT_TESTS=OFF \ -DFORCE_UNSUPPORTED_COMPILER=1 -S ../mysql -B ../mysql/build cmake --build ../mysql/build --parallel ''${NIX_BUILD_CORES:-1} --target mysqlclient mysqlxclient diff --git a/pkgs/development/tools/norminette/default.nix b/pkgs/development/tools/norminette/default.nix index 9e6c250aed871..0be1693d5d2a8 100644 --- a/pkgs/development/tools/norminette/default.nix +++ b/pkgs/development/tools/norminette/default.nix @@ -5,13 +5,13 @@ python3Packages.buildPythonApplication rec { pname = "norminette"; - version = "3.3.54"; + version = "3.3.55"; src = fetchFromGitHub { owner = "42School"; repo = pname; - rev = version; - hash = "sha256-r7cFaETv2gxNRhfw/F3B+7r3JzwvFvIFVSQ6MHQuEi4="; + rev = "refs/tags/${version}"; + hash = "sha256-SaXOUpYEbc2QhZ8aKS+JeJ22MSXZ8HZuRmVQ9fWk7tM="; }; nativeCheckInputs = with python3Packages; [ diff --git a/pkgs/development/tools/ocaml/dune/3.nix b/pkgs/development/tools/ocaml/dune/3.nix index 595ba9c9da5b9..1d6ed89d76970 100644 --- a/pkgs/development/tools/ocaml/dune/3.nix +++ b/pkgs/development/tools/ocaml/dune/3.nix @@ -6,11 +6,11 @@ else stdenv.mkDerivation rec { pname = "dune"; - version = "3.12.2"; + version = "3.13.0"; src = fetchurl { url = "https://github.com/ocaml/dune/releases/download/${version}/dune-${version}.tbz"; - hash = "sha256-6KpfAf7oPvrIcz3wvsPiOq7NtFJLxYuAZc0YzAcpX7M="; + hash = "sha256-8YASV+AchGvXEBfsXUsrdf0xsgoNWXm5M7N8yEU2eN4="; }; nativeBuildInputs = [ ocaml findlib ]; diff --git a/pkgs/development/tools/ocaml/js_of_ocaml/compiler.nix b/pkgs/development/tools/ocaml/js_of_ocaml/compiler.nix index 78dfa8b12e755..5af30cc255068 100644 --- a/pkgs/development/tools/ocaml/js_of_ocaml/compiler.nix +++ b/pkgs/development/tools/ocaml/js_of_ocaml/compiler.nix @@ -5,12 +5,12 @@ buildDunePackage rec { pname = "js_of_ocaml-compiler"; - version = "5.5.2"; + version = "5.6.0"; minimalOCamlVersion = "4.08"; src = fetchurl { url = "https://github.com/ocsigen/js_of_ocaml/releases/download/${version}/js_of_ocaml-${version}.tbz"; - hash = "sha256-l+aFEhFP8dl0Nnhff7m7mMUhgRrMXP8ysQS8XEoprDM="; + hash = "sha256-hDXwJjOhfvbIoaMXGmU3/bIGwAxPt9TKVCUN9tr2wj8="; }; nativeBuildInputs = [ menhir ]; diff --git a/pkgs/development/tools/oh-my-posh/default.nix b/pkgs/development/tools/oh-my-posh/default.nix index 03249309f12c7..ce6d63c418f0d 100644 --- a/pkgs/development/tools/oh-my-posh/default.nix +++ b/pkgs/development/tools/oh-my-posh/default.nix @@ -6,16 +6,16 @@ buildGoModule rec { pname = "oh-my-posh"; - version = "18.26.1"; + version = "19.8.2"; src = fetchFromGitHub { owner = "jandedobbeleer"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-8MK8YzBplbP1de8QKJJBLgbMd1K+H2sVutwKSskU82Q="; + hash = "sha256-Gc8pz+DFP0Wze6YC4hzhgZiSGi61j7Lzak/o3LhdcfI="; }; - vendorHash = "sha256-ivd30IEoF9WuGDzufIOXJ8LUqHp3zPaiPgplj9jqzqw="; + vendorHash = "sha256-8ZupQe4b3uCX79Q0oYqggMWZE9CfX5OSFdLIrxT8CHY="; sourceRoot = "${src.name}/src"; diff --git a/pkgs/development/tools/okteto/default.nix b/pkgs/development/tools/okteto/default.nix index 5e153e4a90f80..1c7ba093b6aaf 100644 --- a/pkgs/development/tools/okteto/default.nix +++ b/pkgs/development/tools/okteto/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "okteto"; - version = "2.24.0"; + version = "2.25.1"; src = fetchFromGitHub { owner = "okteto"; repo = "okteto"; rev = version; - hash = "sha256-DnhUqnz+0VfZk5KCbVrQcQpsAI2ojVFMHw83UN2DzwQ="; + hash = "sha256-HBXp66chq+SzdEb463awolf4Uv0ScHN6MjoziYyh4kA="; }; - vendorHash = "sha256-vSvHjQZFLzUIC9u+myI6Xi4YhetVkiQxBIkm5/RoV2U="; + vendorHash = "sha256-+Adnveutg8soqK2Zwn2SNq7SEHd/Z91diHbPYHrGVrA="; postPatch = '' # Disable some tests that need file system & network access. diff --git a/pkgs/development/tools/omniorb/default.nix b/pkgs/development/tools/omniorb/default.nix index 28c922f2bd6b7..d9bca7061c1ad 100644 --- a/pkgs/development/tools/omniorb/default.nix +++ b/pkgs/development/tools/omniorb/default.nix @@ -8,11 +8,11 @@ stdenv.mkDerivation rec { pname = "omniorb"; - version = "4.3.1"; + version = "4.3.2"; src = fetchurl { url = "mirror://sourceforge/project/omniorb/omniORB/omniORB-${version}/omniORB-${version}.tar.bz2"; - hash = "sha256-D0K8Prc3yuaA2vqFs645WOn1ajeRLF+2uHWTP4+3OQ0="; + hash = "sha256-HHRTMNAZBK/Xoe0KWJa5puU6waS4ZKSFA7k8fuy/H6g="; }; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/development/tools/omnisharp-roslyn/deps.nix b/pkgs/development/tools/omnisharp-roslyn/deps.nix index 480a0c024b90e..d53ef9b60c79e 100644 --- a/pkgs/development/tools/omnisharp-roslyn/deps.nix +++ b/pkgs/development/tools/omnisharp-roslyn/deps.nix @@ -11,11 +11,11 @@ (fetchNuGet { pname = "ICSharpCode.Decompiler"; version = "8.2.0.7535"; sha256 = "1pvy3kss6s1v60yspfw11y3rs750rbxh735p90zrgxjshp9sq5g0"; }) (fetchNuGet { pname = "McMaster.Extensions.CommandLineUtils"; version = "4.1.0"; sha256 = "1ppw9nx9s5yyp6j8ljky7l9y5b91yf0sj2lqbakabjvzppr0pw4l"; }) (fetchNuGet { pname = "MediatR"; version = "8.1.0"; sha256 = "0cqx7yfh998xhsfk5pr6229lcjcs1jxxyqz7dwskc9jddl6a2akp"; }) - (fetchNuGet { pname = "Microsoft.AspNetCore.App.Ref"; version = "6.0.25"; sha256 = "1vrmqn5j6ibwkqasbf7x7n4w5jdclnz3giymiwvym2wa0y5zc59q"; }) - (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.linux-arm64"; version = "6.0.25"; sha256 = "0mgcs4si7mwd0f555s1vg17pf4nqfaijd1pci359l1pgrmv70rrg"; }) - (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.linux-x64"; version = "6.0.25"; sha256 = "0wvzhqhlmlbnpa18qp8m3wcrlcgj3ckvp3iv2n7g8vb60c3238aq"; }) - (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.osx-arm64"; version = "6.0.25"; sha256 = "1pywgvb8ck1d5aadmijd5s3z6yclchd9pa6dsahijmm55ibplx36"; }) - (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.osx-x64"; version = "6.0.25"; sha256 = "1zlf0w7i6r02719dv3nw4jy14sa0rs53i89an5alz5qmywdy3f1d"; }) + (fetchNuGet { pname = "Microsoft.AspNetCore.App.Ref"; version = "6.0.26"; sha256 = "1d8nkz24vsm0iy2xm8y5ak2q1w1p99dxyz0y26acs6sfk2na0vm6"; }) + (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.linux-arm64"; version = "6.0.26"; sha256 = "1za8lc52m4z54d68wd64c2nhzy05g3gx171k5cdlx73fbymiys9z"; }) + (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.linux-x64"; version = "6.0.26"; sha256 = "1zpbmz6z8758gwywzg0bac8kx9x39sxxc9j4a4r2jl74l9ssw4vm"; }) + (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.osx-arm64"; version = "6.0.26"; sha256 = "1i8ydlwjzk7j0mzvn0rpljxfp1h50zwaqalnyvfxai1fwgigzgw5"; }) + (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.osx-x64"; version = "6.0.26"; sha256 = "02src68hd3213sd1a2ms1my7i92knfmdxclvv90il9cky2zsq8kw"; }) (fetchNuGet { pname = "Microsoft.Bcl.AsyncInterfaces"; version = "7.0.0"; sha256 = "1waiggh3g1cclc81gmjrqbh128kwfjky3z79ma4bd2ms9pa3gvfm"; }) (fetchNuGet { pname = "Microsoft.Bcl.AsyncInterfaces"; version = "8.0.0"; sha256 = "0z4jq5prnxyb4p3163yxx35znpd2msjd8hw8ysmv4ah90f5sd9gm"; }) (fetchNuGet { pname = "Microsoft.Build"; version = "17.3.2"; sha256 = "17g4ka0c28l9v3pmf3i7cvic137h7zg6xqc78qf5j5hj7qbcps5g"; }) @@ -66,15 +66,15 @@ (fetchNuGet { pname = "Microsoft.Extensions.Primitives"; version = "8.0.0"; sha256 = "0aldaz5aapngchgdr7dax9jw5wy7k7hmjgjpfgfv1wfif27jlkqm"; }) (fetchNuGet { pname = "Microsoft.IO.Redist"; version = "6.0.0"; sha256 = "17d02106ksijzcnh03h8qaijs77xsba5l50chng6gb8nwi7wrbd5"; }) (fetchNuGet { pname = "Microsoft.NET.StringTools"; version = "17.3.2"; sha256 = "1sg1wr7lza5c0xc4cncqr9fbsr30jlzrd1kwszr9744pfqfk1jj3"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Host.linux-arm64"; version = "6.0.25"; sha256 = "052388yjivzkfllkss0nljbzmjx787jqdjsbb6ls855sp6wh9xfd"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Host.linux-x64"; version = "6.0.25"; sha256 = "103xy6kncjwbbchfnpqvsjpjy92x3dralcg9pw939jp0dwggwarz"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Host.osx-arm64"; version = "6.0.25"; sha256 = "13m14pdx5xfxky07xgxf6hjd7g9l4k6k40wvp9znhvn27pa0wdxv"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Host.osx-x64"; version = "6.0.25"; sha256 = "132pgjhv42mqzx4007sd59bkds0fwsv5xaz07y2yffbn3lzr228k"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Ref"; version = "6.0.25"; sha256 = "0jfhmfxpx1h4f3axgf60gc8d4cnlvbb853400kag6nk0875hr0x1"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.linux-arm64"; version = "6.0.25"; sha256 = "0jpcmva1l8z36r4phz055l7fz9s6z8pv8pqc4ia69mhhgvr0ks7y"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.linux-x64"; version = "6.0.25"; sha256 = "012jml0bqxbspahf1j4bvvd91pz85hsbcyhq00gxczcazhxpkhz4"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.osx-arm64"; version = "6.0.25"; sha256 = "0wgwxpyy1n550sw7npjg69zpxknwn0ay30m2qybvqb5mj857qzxi"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.osx-x64"; version = "6.0.25"; sha256 = "08vr7c5bg5x3w35l54z1azif7ysfc2yiyz50ip1dl0mpqywvlswr"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Host.linux-arm64"; version = "6.0.26"; sha256 = "19y6c6v20bgf7x7rrh4rx9y7s5fy8vp5m4j9b6gi1wp4rpb5mza4"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Host.linux-x64"; version = "6.0.26"; sha256 = "0p7hhidaa3mnyiwnsijwy8578v843x8hh99255s69qwwyld6falv"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Host.osx-arm64"; version = "6.0.26"; sha256 = "1mq11xsv9g1vsasp6k80y7xlvwi9hrpk5dgm773fvy8538s01gfv"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Host.osx-x64"; version = "6.0.26"; sha256 = "1chac9b4424ihrrnlzvc7qz6j4ymfjyv4kzyazzzw19yhymdkh2s"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Ref"; version = "6.0.26"; sha256 = "12gb52dhg5h9hgnyqh1zgj2w46paxv2pfh33pphl9ajhrdr7hlsb"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.linux-arm64"; version = "6.0.26"; sha256 = "164hfrwqz5dxcbb441lridk4mzcqmarb0b7ckgvqhsvpawyjw88v"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.linux-x64"; version = "6.0.26"; sha256 = "0islayddpnflviqpbq4djc4f3v9nhsa2y76k5x6il3csq5vdw2hq"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.osx-arm64"; version = "6.0.26"; sha256 = "1acn5zw1pxzmcg3c0pbf9hal36fbdh9mvbsiwra7simrk7hzqpdc"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.osx-x64"; version = "6.0.26"; sha256 = "00f9l9dkdz0zv5csaw8fkm6s8ckrj5n9k3ygz12daa22l3bcn6ii"; }) (fetchNuGet { pname = "Microsoft.NETCore.Platforms"; version = "1.1.0"; sha256 = "08vh1r12g6ykjygq5d3vq09zylgb84l63k49jc4v8faw9g93iqqm"; }) (fetchNuGet { pname = "Microsoft.NETCore.Platforms"; version = "5.0.0"; sha256 = "0mwpwdflidzgzfx2dlpkvvnkgkr2ayaf0s80737h4wa35gaj11rc"; }) (fetchNuGet { pname = "Microsoft.NETFramework.ReferenceAssemblies"; version = "1.0.3"; sha256 = "0hc4d4d4358g5192mf8faijwk0bpf9pjwcfd3h85sr67j0zhj6hl"; }) diff --git a/pkgs/development/tools/open-policy-agent/default.nix b/pkgs/development/tools/open-policy-agent/default.nix index 2d5fae3311426..ee249c2c7657c 100644 --- a/pkgs/development/tools/open-policy-agent/default.nix +++ b/pkgs/development/tools/open-policy-agent/default.nix @@ -11,13 +11,13 @@ assert enableWasmEval && stdenv.isDarwin -> builtins.throw "building with wasm o buildGoModule rec { pname = "open-policy-agent"; - version = "0.60.0"; + version = "0.61.0"; src = fetchFromGitHub { owner = "open-policy-agent"; repo = "opa"; rev = "v${version}"; - hash = "sha256-E+94J83IDLuEayrlwIp8TL+GZeUCkQmSyNL8N7mvK6o="; + hash = "sha256-d0/S9XP/W6Mhs1b9IBzm7kerb6SJ7UzsYS0DnTDVfvY="; }; vendorHash = null; diff --git a/pkgs/development/tools/package-project-cmake/default.nix b/pkgs/development/tools/package-project-cmake/default.nix index fa40335a18014..e768a74c427d7 100644 --- a/pkgs/development/tools/package-project-cmake/default.nix +++ b/pkgs/development/tools/package-project-cmake/default.nix @@ -5,13 +5,13 @@ stdenvNoCC.mkDerivation (finalAttrs: { pname = "package-project-cmake"; - version = "1.11.1"; + version = "1.11.2"; src = fetchFromGitHub { owner = "TheLartians"; repo = "PackageProject.cmake"; rev = "v${finalAttrs.version}"; - hash = "sha256-E7WZSYDlss5bidbiWL1uX41Oh6JxBRtfhYsFU19kzIw="; + hash = "sha256-2u7H2ZR7eQ6eoRIVZ1WBxw9K93E8BVYErZNDe1Jl8rg="; }; dontConfigure = true; diff --git a/pkgs/development/tools/packer/default.nix b/pkgs/development/tools/packer/default.nix index d02a32827c2c0..cbdd003d9216d 100644 --- a/pkgs/development/tools/packer/default.nix +++ b/pkgs/development/tools/packer/default.nix @@ -6,16 +6,16 @@ buildGoModule rec { pname = "packer"; - version = "1.10.0"; + version = "1.10.1"; src = fetchFromGitHub { owner = "hashicorp"; repo = "packer"; rev = "v${version}"; - hash = "sha256-pHqYO3a9JruOCbMbLLQ2BqS4bcCeaBf82cBxGVHgLoY="; + hash = "sha256-P7QG4ldOJn83w5XxIzC1dhVmn2e/gcwHBT9cZiQmsbo="; }; - vendorHash = "sha256-ydG1nINW9uGYv5uNlJ6p8GHSkIW83qGpUAfRU+yQXmc="; + vendorHash = "sha256-KtMK6jZ9c84OVWJC1njgOh1U+wrFo4G6Qt/XfOFvIhE="; subPackages = [ "." ]; diff --git a/pkgs/development/tools/packet-sd/default.nix b/pkgs/development/tools/packet-sd/default.nix index 5f61b584489c6..a1418df2cc3a4 100644 --- a/pkgs/development/tools/packet-sd/default.nix +++ b/pkgs/development/tools/packet-sd/default.nix @@ -1,4 +1,9 @@ -{ buildGoModule, fetchFromGitHub, lib }: +{ buildGoModule +, fetchFromGitHub +, fetchpatch2 +, lib +}: + buildGoModule rec { pname = "prometheus-packet-sd"; version = "0.0.3"; @@ -7,9 +12,23 @@ buildGoModule rec { owner = "packethost"; repo = "prometheus-packet-sd"; rev = "v${version}"; - sha256 = "sha256-2k8AsmyhQNNZCzpVt6JdgvI8IFb5pRi4ic6Yn2NqHMM="; + hash = "sha256-2k8AsmyhQNNZCzpVt6JdgvI8IFb5pRi4ic6Yn2NqHMM="; }; + patches = [ + (fetchpatch2 { + # fix racy permissions on outfile + # https://github.com/packethost/prometheus-packet-sd/issues/15 + url = "https://github.com/packethost/prometheus-packet-sd/commit/bf0ed3a1da4d0f797bd29e4a1857ac65a1d04750.patch"; + hash = "sha256-ZLV9lyqZxpIQ1Cmzy/nY/85b4QWF5Ou0XcdrZXxck2E="; + }) + (fetchpatch2 { + # restrict outfile to not be world/group writable + url = "https://github.com/packethost/prometheus-packet-sd/commit/a0afc2a4c3f49dc234d0d2c4901df25b4110b3ec.patch"; + hash = "sha256-M5133+r77z21/Ulnbz+9sGbbuY5UpU1+22iY464UVAU="; + }) + ]; + vendorHash = null; subPackages = [ "." ]; diff --git a/pkgs/development/tools/parsing/tree-sitter/grammars/default.nix b/pkgs/development/tools/parsing/tree-sitter/grammars/default.nix index e3dde6251b1cc..1544e737c0b97 100644 --- a/pkgs/development/tools/parsing/tree-sitter/grammars/default.nix +++ b/pkgs/development/tools/parsing/tree-sitter/grammars/default.nix @@ -49,6 +49,7 @@ tree-sitter-json5 = lib.importJSON ./tree-sitter-json5.json; tree-sitter-jsonnet = lib.importJSON ./tree-sitter-jsonnet.json; tree-sitter-julia = lib.importJSON ./tree-sitter-julia.json; + tree-sitter-just = lib.importJSON ./tree-sitter-just.json; tree-sitter-kotlin = lib.importJSON ./tree-sitter-kotlin.json; tree-sitter-latex = lib.importJSON ./tree-sitter-latex.json; tree-sitter-ledger = lib.importJSON ./tree-sitter-ledger.json; @@ -90,6 +91,7 @@ tree-sitter-supercollider = lib.importJSON ./tree-sitter-supercollider.json; tree-sitter-surface = lib.importJSON ./tree-sitter-surface.json; tree-sitter-svelte = lib.importJSON ./tree-sitter-svelte.json; + tree-sitter-templ = lib.importJSON ./tree-sitter-templ.json; tree-sitter-tiger = lib.importJSON ./tree-sitter-tiger.json; tree-sitter-tlaplus = lib.importJSON ./tree-sitter-tlaplus.json; tree-sitter-toml = lib.importJSON ./tree-sitter-toml.json; @@ -101,9 +103,9 @@ tree-sitter-verilog = lib.importJSON ./tree-sitter-verilog.json; tree-sitter-vim = lib.importJSON ./tree-sitter-vim.json; tree-sitter-vue = lib.importJSON ./tree-sitter-vue.json; + tree-sitter-wgsl = lib.importJSON ./tree-sitter-wgsl.json; tree-sitter-wing = lib.importJSON ./tree-sitter-wing.json; tree-sitter-yaml = lib.importJSON ./tree-sitter-yaml.json; tree-sitter-yang = lib.importJSON ./tree-sitter-yang.json; tree-sitter-zig = lib.importJSON ./tree-sitter-zig.json; - tree-sitter-wgsl = lib.importJSON ./tree-sitter-wgsl.json; } diff --git a/pkgs/development/tools/parsing/tree-sitter/grammars/tree-sitter-just.json b/pkgs/development/tools/parsing/tree-sitter/grammars/tree-sitter-just.json new file mode 100644 index 0000000000000..46e3c31dc394e --- /dev/null +++ b/pkgs/development/tools/parsing/tree-sitter/grammars/tree-sitter-just.json @@ -0,0 +1,12 @@ +{ + "url": "https://github.com/IndianBoy42/tree-sitter-just", + "rev": "f807ab33c36651ecb503a291aed933932754864d", + "date": "2024-01-11T04:53:14-05:00", + "path": "/nix/store/f6b4xvxkbzrwmxk8vr1gz4c3g3pqh2hz-tree-sitter-just", + "sha256": "1ng49slp5x98s9ydc7gha7gkcj93ks4iv0ixc7n0z9dr4akqrbw8", + "hash": "sha256-iK+MpyK5pQ/sYT2CHYmeI0k231HwHdZ80ij1cqlO5Nk=", + "fetchLFS": false, + "fetchSubmodules": false, + "deepClone": false, + "leaveDotGit": false +} diff --git a/pkgs/development/tools/parsing/tree-sitter/grammars/tree-sitter-templ.json b/pkgs/development/tools/parsing/tree-sitter/grammars/tree-sitter-templ.json new file mode 100644 index 0000000000000..240368e1e55d2 --- /dev/null +++ b/pkgs/development/tools/parsing/tree-sitter/grammars/tree-sitter-templ.json @@ -0,0 +1,12 @@ +{ + "url": "https://github.com/vrischmann/tree-sitter-templ", + "rev": "14d105789af342f7f0c32bff2fec1a6edec59f60", + "date": "2023-12-29T22:31:39+01:00", + "path": "/nix/store/8yixhjmhynryb79g3wff5kxgz35ncg3n-tree-sitter-templ", + "sha256": "1hr0l9ibm12ggiyk5m3h12fjgrdkfv7d2qlcfy6l6c10k4ghngf2", + "hash": "sha256-wj0LH5kgMEONd4xi0c52s+UnnQhw1DJ9fE+EumKiIMM=", + "fetchLFS": false, + "fetchSubmodules": false, + "deepClone": false, + "leaveDotGit": false +} diff --git a/pkgs/development/tools/parsing/tree-sitter/update.nix b/pkgs/development/tools/parsing/tree-sitter/update.nix index bd4074f933bae..aad4a6c9a029a 100644 --- a/pkgs/development/tools/parsing/tree-sitter/update.nix +++ b/pkgs/development/tools/parsing/tree-sitter/update.nix @@ -108,6 +108,10 @@ let orga = "wilfred"; repo = "tree-sitter-elisp"; }; + "tree-sitter-just" = { + orga = "IndianBoy42"; + repo = "tree-sitter-just"; + }; "tree-sitter-nix" = { orga = "cstrahan"; repo = "tree-sitter-nix"; @@ -401,6 +405,10 @@ let orga = "szebniok"; repo = "tree-sitter-wgsl"; }; + "tree-sitter-templ" = { + orga = "vrischmann"; + repo = "tree-sitter-templ"; + }; }; allGrammars = diff --git a/pkgs/development/tools/patatt/default.nix b/pkgs/development/tools/patatt/default.nix index 847698f799549..aed80b94ac6bd 100644 --- a/pkgs/development/tools/patatt/default.nix +++ b/pkgs/development/tools/patatt/default.nix @@ -2,11 +2,11 @@ python3Packages.buildPythonApplication rec { pname = "patatt"; - version = "0.6.2"; + version = "0.6.3"; src = fetchPypi { inherit pname version; - sha256 = "sha256-WaEq4qWL6xAZ3cJJ/lkJ5XTIrXcOMIESbytvWbsYx2s="; + sha256 = "sha256-mAgm9lKdJXbCZ8ofVk1b7wRstH5UIVu1mO1sS5stCig="; }; propagatedBuildInputs = with python3Packages; [ diff --git a/pkgs/development/tools/postiats-utilities/default.nix b/pkgs/development/tools/postiats-utilities/default.nix index 51d9d14efa17e..6ac021e1ba092 100644 --- a/pkgs/development/tools/postiats-utilities/default.nix +++ b/pkgs/development/tools/postiats-utilities/default.nix @@ -26,7 +26,7 @@ stdenv.mkDerivation rec { ''; installPhase = '' - libdir="$out/lib/${python3.libPrefix}/site-packages" + libdir="$out/${python3.sitePackages}" mkdir -p "$libdir" cp -r postiats "$libdir" diff --git a/pkgs/development/tools/protoc-gen-go-vtproto/default.nix b/pkgs/development/tools/protoc-gen-go-vtproto/default.nix index d24ab86538af8..e1e716eee13af 100644 --- a/pkgs/development/tools/protoc-gen-go-vtproto/default.nix +++ b/pkgs/development/tools/protoc-gen-go-vtproto/default.nix @@ -4,16 +4,16 @@ }: buildGoModule rec { pname = "protoc-gen-go-vtproto"; - version = "0.5.0"; + version = "0.6.0"; src = fetchFromGitHub { owner = "planetscale"; repo = "vtprotobuf"; rev = "v${version}"; - sha256 = "sha256-2DpL8CYl0MWpr7TBJPwDlgKvOoa5RrVwMjOxrEP5Wio="; + sha256 = "sha256-ji6elc0hN49A4Ov/ckd8chPR4/8ZX11THzVz9HJGui4="; }; - vendorHash = "sha256-JpSVO8h7+StLG9/dJQkmrIlh9zIHABoqP1hq+X5ajVs="; + vendorHash = "sha256-UMOEePOtOtmm9ShQy5LXcEUTv8/SIG9dU7/9vLhrBxQ="; excludedPackages = [ "conformance" ]; diff --git a/pkgs/development/tools/protoc-gen-validate/default.nix b/pkgs/development/tools/protoc-gen-validate/default.nix index 005b6eac1f8b2..b58988a4af59d 100644 --- a/pkgs/development/tools/protoc-gen-validate/default.nix +++ b/pkgs/development/tools/protoc-gen-validate/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "protoc-gen-validate"; - version = "1.0.2"; + version = "1.0.4"; src = fetchFromGitHub { owner = "bufbuild"; repo = "protoc-gen-validate"; rev = "v${version}"; - sha256 = "sha256-sztpUzrVvYT3GFVbfd91rOudj/PEHHizTOzTrH1fQts="; + sha256 = "sha256-NPjBVd5Ch8h2+48uymMRjjY6nepmGiY8z9Kwt+wN4lI="; }; - vendorHash = "sha256-UPmeb36kF+z37+RcyXaOsJvAto1xrJUyJqcPyODAQrY="; + vendorHash = "sha256-1bR6cV7R9JEmayE3XN2fcrPQL6xspkKb+WYf+IrOhds="; excludedPackages = [ "tests" ]; diff --git a/pkgs/development/tools/protolint/default.nix b/pkgs/development/tools/protolint/default.nix index e4121a02f5808..02c5b18ad2e3c 100644 --- a/pkgs/development/tools/protolint/default.nix +++ b/pkgs/development/tools/protolint/default.nix @@ -1,13 +1,13 @@ { lib, buildGoModule, fetchFromGitHub }: buildGoModule rec { pname = "protolint"; - version = "0.47.4"; + version = "0.47.5"; src = fetchFromGitHub { owner = "yoheimuta"; repo = pname; rev = "v${version}"; - hash = "sha256-OfAkqShUAC84buWhQffvIF5i6maPSWKa9nr5hhUwV6Y="; + hash = "sha256-xXl9MY0oBjyDlLVvpdV7nquxUxahfPslxJeOeUmwFgk="; }; vendorHash = "sha256-62SxRvoN4ejmAczs823jftXUmeI4ozfb6plHYT1JwZ0="; diff --git a/pkgs/development/tools/pscale/default.nix b/pkgs/development/tools/pscale/default.nix index 055cfae346c11..98b6e7e0c3bf8 100644 --- a/pkgs/development/tools/pscale/default.nix +++ b/pkgs/development/tools/pscale/default.nix @@ -8,16 +8,16 @@ buildGoModule rec { pname = "pscale"; - version = "0.177.0"; + version = "0.182.0"; src = fetchFromGitHub { owner = "planetscale"; repo = "cli"; rev = "v${version}"; - sha256 = "sha256-nvtLUrJhxqMWi/NzKw1KYOEL+1DsWfJoLXoXQI7QP6M="; + sha256 = "sha256-zqwdTtNbPm9D0zfVI8zd3hFM6zLQVxXyxNOyEW1gSHY="; }; - vendorHash = "sha256-n6vPeeOmSB/qHBGCdZHZtf3JD/wgFYD0+VO3Ir8MtqE="; + vendorHash = "sha256-93Eu38tDxV4pT4HtmssFckYwdnkOaW2IY6PsqT9W73c="; ldflags = [ "-s" "-w" diff --git a/pkgs/development/tools/pur/default.nix b/pkgs/development/tools/pur/default.nix index 710dc9e71413f..9f8527b347659 100644 --- a/pkgs/development/tools/pur/default.nix +++ b/pkgs/development/tools/pur/default.nix @@ -5,28 +5,32 @@ python3.pkgs.buildPythonApplication rec { pname = "pur"; - version = "7.0.0"; + version = "7.3.1"; + format = "setuptools"; src = fetchFromGitHub { owner = "alanhamlett"; repo = "pip-update-requirements"; rev = "refs/tags/${version}"; - hash = "sha256-JAjz9A9r1H6MJX7MSq7UvQKfULhB9UuPP3tI6Cggx9I="; + hash = "sha256-W6otdj1C3Nn3DUvwp9MPqMo2y4ITqgYrqlW/uxIj2YA="; }; - propagatedBuildInputs = [ - python3.pkgs.click + propagatedBuildInputs = with python3.pkgs; [ + click ]; - nativeCheckInputs = [ - python3.pkgs.pytestCheckHook + nativeCheckInputs = with python3.pkgs; [ + pytestCheckHook ]; - pythonImportsCheck = [ "pur" ]; + pythonImportsCheck = [ + "pur" + ]; meta = with lib; { description = "Python library for update and track the requirements"; homepage = "https://github.com/alanhamlett/pip-update-requirements"; + changelog = "https://github.com/alanhamlett/pip-update-requirements/blob/${version}/HISTORY.rst"; license = with licenses; [ bsd2 ]; maintainers = with maintainers; [ fab ]; }; diff --git a/pkgs/development/tools/purescript/spago/default.nix b/pkgs/development/tools/purescript/spago/default.nix index ada0eb350efae..82d3be2fd4691 100644 --- a/pkgs/development/tools/purescript/spago/default.nix +++ b/pkgs/development/tools/purescript/spago/default.nix @@ -55,4 +55,7 @@ spago.overrideAttrs (oldAttrs: { touch $out ''; }; + meta = (oldAttrs.meta or {}) // { + mainProgram = "spago"; + }; }) diff --git a/pkgs/development/tools/pypi-mirror/default.nix b/pkgs/development/tools/pypi-mirror/default.nix index d992ac23da029..f2a629042fd62 100644 --- a/pkgs/development/tools/pypi-mirror/default.nix +++ b/pkgs/development/tools/pypi-mirror/default.nix @@ -4,13 +4,13 @@ }: python3.pkgs.buildPythonApplication rec { pname = "pypi-mirror"; - version = "5.0.2"; + version = "5.2.0"; src = fetchFromGitHub { owner = "montag451"; repo = pname; rev = "refs/tags/v${version}"; - sha256 = "sha256-AqE3lAcqWq5CGsgwm8jLa1wX93deFC4mKn+oaVhO508="; + sha256 = "sha256-bvnOieNs8pCDKuCSJx88vRxFPcOGWUj/i3mNS6E/nok="; }; pythonImportsCheck = [ "pypi_mirror" ]; diff --git a/pkgs/development/tools/quick-lint-js/build-tools-install.patch b/pkgs/development/tools/quick-lint-js/build-tools-install.patch deleted file mode 100644 index 2326170d52368..0000000000000 --- a/pkgs/development/tools/quick-lint-js/build-tools-install.patch +++ /dev/null @@ -1,32 +0,0 @@ -From 3923f0df76d24b73d57f15eec61ab190ea048093 Mon Sep 17 00:00:00 2001 -From: "Matthew \"strager\" Glazar" <strager.nds@gmail.com> -Date: Thu, 26 Oct 2023 18:08:30 -0400 -Subject: [PATCH] fix(build): fix installing build tools for cross-compilation - -'cmake --install . --component build-tools' copies no files [1]. This -was caused by commit 1f2e1a47 where the code calling install() became -dead code on accident. Call install() so that 'cmake --install' copies -the build artifacts as intended. - -[1] https://github.com/quick-lint/quick-lint-js/issues/1099 - -Refs: 1f2e1a4701793cac24eaac44d7af81a8b820b1bc ---- - docs/CHANGELOG.md | 7 +++++++ - tools/CMakeLists.txt | 1 - - 2 files changed, 7 insertions(+), 1 deletion(-) - - (docs/CHANGELOG.md changes omitted to reduce conflicts.) - -diff --git a/tools/CMakeLists.txt b/tools/CMakeLists.txt -index 71ccbdf1b..b541afb52 100644 ---- a/tools/CMakeLists.txt -+++ b/tools/CMakeLists.txt -@@ -68,7 +68,6 @@ if (QUICK_LINT_JS_ENABLE_BUILD_TOOLS) - COMMENT "Building all quick-lint-js build-time tools" - DEPENDS ${QUICK_LINT_JS_BUILD_TOOL_TARGETS} - ) --elseif (QUICK_LINT_JS_ENABLE_BUILD_TOOLS) - install( - TARGETS ${QUICK_LINT_JS_BUILD_TOOL_TARGETS} - COMPONENT build-tools diff --git a/pkgs/development/tools/quick-lint-js/default.nix b/pkgs/development/tools/quick-lint-js/default.nix index 32c61c836b969..794e00f0908b5 100644 --- a/pkgs/development/tools/quick-lint-js/default.nix +++ b/pkgs/development/tools/quick-lint-js/default.nix @@ -1,21 +1,19 @@ { buildPackages, cmake, fetchFromGitHub, lib, ninja, stdenv, testers, quick-lint-js }: let - version = "2.17.0"; + version = "3.0.0"; src = fetchFromGitHub { owner = "quick-lint"; repo = "quick-lint-js"; rev = version; - sha256 = "sha256-5+Cyw1cLgBkTePNNFoNAF2oHnLQDHr4vHiaZHJrewug="; + hash = "sha256-7apzP37GK5ZbCxcWfjK1ID6sYa24uoS1GUH3CBDmcRA="; }; quick-lint-js-build-tools = buildPackages.stdenv.mkDerivation { pname = "quick-lint-js-build-tools"; inherit version src; - patches = [ ./build-tools-install.patch ]; - nativeBuildInputs = [ cmake ninja ]; doCheck = false; diff --git a/pkgs/development/tools/rbspy/default.nix b/pkgs/development/tools/rbspy/default.nix index ef2a32003b1b4..d30c75ea244e3 100644 --- a/pkgs/development/tools/rbspy/default.nix +++ b/pkgs/development/tools/rbspy/default.nix @@ -9,16 +9,16 @@ rustPlatform.buildRustPackage rec { pname = "rbspy"; - version = "0.18.1"; + version = "0.19.0"; src = fetchFromGitHub { owner = "rbspy"; repo = "rbspy"; rev = "refs/tags/v${version}"; - hash = "sha256-MfXXqty5ZE7wFbc/qJB/FnMxM+Hzfa4GEGgGKwurXp8="; + hash = "sha256-OO0EX+r7W8HxPjbER+84m+nagPBM6GlCdB30VQV58mQ="; }; - cargoHash = "sha256-gs9m3hUH75T8kGfKRpPLc1CR1n2Jc+uZKE1SZi25VFA="; + cargoHash = "sha256-yywh/O4odm+VmM0k/Ft0DEihq6r+xehrpjbYryvVStw="; # error: linker `aarch64-linux-gnu-gcc` not found postPatch = '' diff --git a/pkgs/development/tools/refinery-cli/default.nix b/pkgs/development/tools/refinery-cli/default.nix index 1159c87e8a38d..140efe5bfd1ba 100644 --- a/pkgs/development/tools/refinery-cli/default.nix +++ b/pkgs/development/tools/refinery-cli/default.nix @@ -2,15 +2,15 @@ rustPlatform.buildRustPackage rec { pname = "refinery-cli"; - version = "0.8.11"; + version = "0.8.12"; src = fetchCrate { pname = "refinery_cli"; inherit version; - sha256 = "sha256-Dx0xcPQsq5fYrjgCrEjXyQJOpjEF9d1vavTo+LUKSyE="; + sha256 = "sha256-ftti/+Zl9/8CsrlEI5gZQF0M33vzl5aK3X/EfCujtY4="; }; - cargoHash = "sha256-giD9yBbC3Fsgtch6lkMLGkYik/hivK48Um2qWI7EV+A="; + cargoHash = "sha256-KlZTgg/Y4cXy5DR8iT4olVTF0kq1g5AQm3Sjpmrl6lk="; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/development/tools/refurb/default.nix b/pkgs/development/tools/refurb/default.nix index 5eb52df0a0f11..17c32d78d2883 100644 --- a/pkgs/development/tools/refurb/default.nix +++ b/pkgs/development/tools/refurb/default.nix @@ -5,14 +5,14 @@ python3Packages.buildPythonApplication rec { pname = "refurb"; - version = "1.27.0"; + version = "1.28.0"; format = "pyproject"; src = fetchFromGitHub { owner = "dosisod"; repo = "refurb"; rev = "refs/tags/v${version}"; - hash = "sha256-v9zeip7dyEGbn4FVXkd713ybVyf9tvvflCeiS4H7lO0="; + hash = "sha256-b7Id2Oyjw3NZno56IMDIq7fn5u9+jn42nuae8ix90fM="; }; postPatch = '' diff --git a/pkgs/development/tools/reindeer/default.nix b/pkgs/development/tools/reindeer/default.nix index bcb022ee10bd8..eaf4b1858814a 100644 --- a/pkgs/development/tools/reindeer/default.nix +++ b/pkgs/development/tools/reindeer/default.nix @@ -11,16 +11,16 @@ rustPlatform.buildRustPackage rec { pname = "reindeer"; - version = "unstable-2024-01-11"; + version = "unstable-2024-01-30"; src = fetchFromGitHub { owner = "facebookincubator"; repo = pname; - rev = "ff28220b43defa70f8cae77d7aa139a2f6048bf3"; - sha256 = "sha256-jh0Gq29OUp7QmSd3sT9pC9OlCnyx8lHJEAEG7eBw448="; + rev = "2fe0af4d3b637d3dfff41d26623a4596a7b5fdb0"; + sha256 = "sha256-MUMqM6BZUECxdOkBdeNMEE88gJumKI/ODo+1hmmrCHY="; }; - cargoSha256 = "sha256-3F1Df66JgZnQbt1zHNOClJPb6IB7crwvCdy7YA4UIKA="; + cargoSha256 = "sha256-fquvUq9MjC7J24wuZR+voUkm3F7eMy1ELxMuELlQaus="; nativeBuildInputs = [ pkg-config ]; buildInputs = diff --git a/pkgs/development/tools/reshape/default.nix b/pkgs/development/tools/reshape/default.nix index 9a41763132580..d0bf9110c14e1 100644 --- a/pkgs/development/tools/reshape/default.nix +++ b/pkgs/development/tools/reshape/default.nix @@ -7,14 +7,14 @@ rustPlatform.buildRustPackage rec { pname = "reshape"; - version = "0.6.1"; + version = "0.7.0"; src = fetchCrate { inherit pname version; - hash = "sha256-pTEOVDeCE69dn005nj1ULGKjguCtC1uReI/l3WEz4+w="; + hash = "sha256-wv2gKyXCEH+tnZkUUAisMbuseth3dsFiJujH8VO1ii4="; }; - cargoHash = "sha256-KYU5drTVHdWmlE01Fq1TxJZTe87yBpDKIGm4P+RRCGw="; + cargoHash = "sha256-VTJ3FNhVLgxo/VVBhk1yF9UUktLXcbrEkYwoyoWFhXA="; nativeCheckInputs = [ postgresqlTestHook diff --git a/pkgs/development/tools/revive/default.nix b/pkgs/development/tools/revive/default.nix index bb6f498e5f8d5..359d16ac187c1 100644 --- a/pkgs/development/tools/revive/default.nix +++ b/pkgs/development/tools/revive/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "revive"; - version = "1.3.5"; + version = "1.3.6"; src = fetchFromGitHub { owner = "mgechev"; repo = pname; rev = "v${version}"; - sha256 = "sha256-yHsEELeBG/dgV1uaYTOfvVVZQZ+AG1kKx86tn9GI+RA="; + sha256 = "sha256-0s90Q07D/a0n/SVgMOnjje9pSCWJOzRx5jH+t9th4rs="; # populate values that require us to use git. By doing this in postFetch we # can delete .git afterwards and maintain better reproducibility of the src. leaveDotGit = true; @@ -18,7 +18,7 @@ buildGoModule rec { rm -rf $out/.git ''; }; - vendorHash = "sha256-hNLHVx3zuCheSfY6TSixfJj/76JQ9nOW+mBquIZCgSk="; + vendorHash = "sha256-rFFgh/BWEejqrhCzCeGWa2AfiNd8dYDvCKvcpXk42nY="; ldflags = [ "-s" @@ -35,7 +35,7 @@ buildGoModule rec { # The following tests fail when built by nix: # - # $ nix log /nix/store/build-revive.1.3.5.drv | grep FAIL + # $ nix log /nix/store/build-revive.1.3.6.drv | grep FAIL # # --- FAIL: TestAll (0.01s) # --- FAIL: TestTimeEqual (0.00s) diff --git a/pkgs/development/tools/rojo/default.nix b/pkgs/development/tools/rojo/default.nix index c15cb643c6ee2..1eaeed08316ac 100644 --- a/pkgs/development/tools/rojo/default.nix +++ b/pkgs/development/tools/rojo/default.nix @@ -8,21 +8,21 @@ }: let - inherit (darwin.apple_sdk.frameworks) CoreServices; + inherit (darwin.apple_sdk.frameworks) CoreServices SystemConfiguration; in rustPlatform.buildRustPackage rec { pname = "rojo"; - version = "7.2.1"; + version = "7.4.0"; src = fetchFromGitHub { owner = "rojo-rbx"; repo = "rojo"; rev = "v${version}"; - sha256 = "sha256-Kmq/lBwayYkFU4mbjExj7M9wpg59OkIiTc+2ZrwpuBc="; + sha256 = "sha256-Eh1G0jX9KXVlMZLl8whxULywadblWml232qvcq4JLJ4="; fetchSubmodules = true; }; - cargoSha256 = "sha256-qx6Ja0DMe4cEmDSpovtY9T3+0nJS9XivR92K3UKgacE="; + cargoSha256 = "sha256-aKfgylY9aspL1JpdYa6hOy/6lQoqO54OhZWqSlMPZ8o="; nativeBuildInputs = [ pkg-config @@ -32,8 +32,12 @@ rustPlatform.buildRustPackage rec { openssl ] ++ lib.optionals stdenv.isDarwin [ CoreServices + SystemConfiguration ]; + # reqwest's native-tls-vendored feature flag uses vendored openssl. this disables that + OPENSSL_NO_VENDOR = "1"; + # tests flaky on darwin on hydra doCheck = !stdenv.isDarwin; diff --git a/pkgs/development/tools/rover/default.nix b/pkgs/development/tools/rover/default.nix index 5fbde990df757..90b3d91413f72 100644 --- a/pkgs/development/tools/rover/default.nix +++ b/pkgs/development/tools/rover/default.nix @@ -1,5 +1,4 @@ { lib -, callPackage , fetchFromGitHub , perl , rustPlatform @@ -9,20 +8,21 @@ rustPlatform.buildRustPackage rec { pname = "rover"; - version = "0.14.0"; + version = "0.22.0"; src = fetchFromGitHub { owner = "apollographql"; repo = pname; rev = "v${version}"; - sha256 = "sha256-fVgo5Ds/VK0kBpF+F2FdMvBnQj2IB+B5ToOK8ONdq6c="; + sha256 = "sha256-+BsD7SRinU57Alg71N3tdL9iFGGdomVA7SrBE6G1f4E="; }; - cargoSha256 = "sha256-fNqnpLNENLJEhbqxLFUqyjAf8tEPCLoGSRV91gOY9LI="; + cargoSha256 = "sha256-SDvOxvfv8FNUebfwSFnBc6ormK2xpXPjmACwtllHfQE="; buildInputs = lib.optionals stdenv.isDarwin [ darwin.apple_sdk.frameworks.Security darwin.apple_sdk.frameworks.CoreServices + darwin.apple_sdk.frameworks.SystemConfiguration ]; nativeBuildInputs = [ @@ -36,15 +36,6 @@ rustPlatform.buildRustPackage rec { "-- --skip=latest_plugins_are_valid_versions" ]; - # The rover-client's build script (xtask/src/commands/prep/schema.rs) will try to - # download the API's graphql schema at build time to our read-only filesystem. - # To avoid this we pre-download it to a location the build script checks. - preBuild = '' - cp ${./schema}/hash.id crates/rover-client/.schema/ - cp ${./schema}/etag.id crates/rover-client/.schema/ - cp ${./schema}/schema.graphql crates/rover-client/.schema/ - ''; - passthru.updateScript = ./update.sh; # Some tests try to write configuration data to a location in the user's home diff --git a/pkgs/development/tools/rover/schema/etag.id b/pkgs/development/tools/rover/schema/etag.id deleted file mode 100644 index 59331ac0df6d3..0000000000000 --- a/pkgs/development/tools/rover/schema/etag.id +++ /dev/null @@ -1 +0,0 @@ -d35f8c48cb89329f33656944fa9e997de1e778b043b9ca4d78c8accdecfd9046 diff --git a/pkgs/development/tools/rover/schema/hash.id b/pkgs/development/tools/rover/schema/hash.id deleted file mode 100644 index d730728cfa77d..0000000000000 --- a/pkgs/development/tools/rover/schema/hash.id +++ /dev/null @@ -1 +0,0 @@ -ff145f12604d11312e6a2f8a61a3d226fcdb2ca79f6b7fbc24c5a22aa23ab1af diff --git a/pkgs/development/tools/rover/schema/schema.graphql b/pkgs/development/tools/rover/schema/schema.graphql deleted file mode 100644 index 8cc527f4f822d..0000000000000 --- a/pkgs/development/tools/rover/schema/schema.graphql +++ /dev/null @@ -1,1980 +0,0 @@ -schema { - query: Query - mutation: Mutation -} - -"""An organization in Apollo Studio. Can have multiple members and graphs.""" -type Organization { - auditLogExports: [AuditLogExport!] - """Graphs belonging to this organization.""" - graphs(includeDeleted: Boolean): [Graph!]! - """Globally unique identifier, which isn't guaranteed stable (can be changed by administrators).""" - id: ID! - """Name of the organization, which can change over time and isn't unique.""" - name: String! - """Graphs belonging to this organization.""" - services(includeDeleted: Boolean): [Graph!]! @deprecated(reason: "Use graphs field instead") -} - -type OrganizationMutation { - """Trigger a request for an audit export""" - requestAuditExport(actors: [ActorInput!], from: Timestamp!, graphIds: [String!], to: Timestamp!): Organization -} - -"""Represents an actor that performs actions in Apollo Studio. Most actors are either a `USER` or a `GRAPH` (based on a request's provided API key), and they have the corresponding `ActorType`.""" -type Actor { - actorId: ID! - type: ActorType! -} - -"""Input type to provide when specifying an `Actor` in operation arguments. See also the `Actor` object type.""" -input ActorInput { - actorId: ID! - type: ActorType! -} - -enum ActorType { - ANONYMOUS_USER - BACKFILL - CRON - GRAPH - INTERNAL_IDENTITY - SYNCHRONIZATION - SYSTEM - USER -} - -union AddOperationCollectionEntriesResult = AddOperationCollectionEntriesSuccess | PermissionError | ValidationError - -type AddOperationCollectionEntriesSuccess { - operationCollectionEntries: [OperationCollectionEntry!]! -} - -union AddOperationCollectionEntryResult = OperationCollectionEntry | PermissionError | ValidationError - -input AddOperationInput { - """The operation's fields.""" - document: OperationCollectionEntryStateInput! - """The operation's name.""" - name: String! -} - -type AffectedQuery { - id: ID! - """First 128 characters of query signature for display""" - signature: String - """Name to display to the user for the operation""" - displayName: String - """Name provided for the operation, which can be empty string if it is an anonymous operation""" - name: String - """Determines if this query validates against the proposed schema""" - isValid: Boolean - """List of changes affecting this query. Returns null if queried from SchemaDiff.changes.affectedQueries.changes""" - changes: [ChangeOnOperation!] - """Whether this operation was ignored and its severity was downgraded for that reason""" - markedAsIgnored: Boolean - """Whether the changes were marked as safe and its severity was downgraded for that reason""" - markedAsSafe: Boolean - """If the operation would be approved if the check ran again. Returns null if queried from SchemaDiff.changes.affectedQueries.alreadyApproved""" - alreadyApproved: Boolean - """If the operation would be ignored if the check ran again""" - alreadyIgnored: Boolean -} - -""" -Represents an API key that's used to authenticate a -particular Apollo user or graph. -""" -interface ApiKey { - """The API key's ID.""" - id: ID! - """The API key's name, for distinguishing it from other keys.""" - keyName: String - """The value of the API key. **This is a secret credential!**""" - token: String! -} - -type ApiKeyProvision { - apiKey: ApiKey! - created: Boolean! -} - -type AuditLogExport { - """The list of actors to filter the audit export""" - actors: [Identity!] - """The time when the audit export was completed""" - completedAt: Timestamp - """The time when the audit export was reqeusted""" - createdAt: Timestamp! - """List of URLs to download the audits for the requested range""" - downloadUrls: [String!] - """The starting point of audits to include in export""" - from: Timestamp! - """The list of graphs to filter the audit export""" - graphs: [Graph!] - """The id for the audit export""" - id: ID! - """The user that initiated the audit export""" - requester: User - """The status of the audit export""" - status: AuditStatus! - """The end point of audits to include in export""" - to: Timestamp! -} - -enum AuditStatus { - CANCELLED - COMPLETED - EXPIRED - FAILED - IN_PROGRESS - QUEUED -} - -"""The building of a Studio variant (including supergraph composition and any contract filtering) as part of a launch.""" -type Build { - """The inputs provided to the build, including subgraph and contract details.""" - input: BuildInput! - """The result of the build. This value is null until the build completes.""" - result: BuildResult -} - -"""A single error that occurred during the failed execution of a build.""" -type BuildError { - code: String - locations: [SourceLocation!]! - message: String! -} - -"""Contains the details of an executed build that failed.""" -type BuildFailure { - """A list of all errors that occurred during the failed build.""" - errorMessages: [BuildError!]! -} - -union BuildInput = CompositionBuildInput | FilterBuildInput - -union BuildResult = BuildFailure | BuildSuccess - -"""Contains the details of an executed build that succeeded.""" -type BuildSuccess { - """Contains the supergraph and API schemas created by composition.""" - coreSchema: CoreSchema! -} - -"""A single change that was made to a definition in a schema.""" -type Change { - """The severity of the change (e.g., `FAILURE` or `NOTICE`)""" - severity: ChangeSeverity! - """Indicates the type of change that was made, and to what (e.g., 'TYPE_REMOVED').""" - code: String! - """Indication of the category of the change (e.g. addition, removal, edit).""" - category: ChangeCategory! - """A human-readable description of the change.""" - description: String! - affectedQueries: [AffectedQuery!] - """Top level node affected by the change.""" - parentNode: NamedIntrospectionType - """ - Node related to the top level node that was changed, such as a field in an object, - a value in an enum or the object of an interface. - """ - childNode: NamedIntrospectionValue - """Target arg of change made.""" - argNode: NamedIntrospectionArg -} - -""" -Defines a set of categories that a schema change -can be grouped by. -""" -enum ChangeCategory { - ADDITION - EDIT - REMOVAL - DEPRECATION -} - -""" -These schema change codes represent all of the possible changes that can -occur during the schema diff algorithm. -""" -enum ChangeCode { - """Field was removed from the type.""" - FIELD_REMOVED - """Type (object or scalar) was removed from the schema.""" - TYPE_REMOVED - """Argument to a field was removed.""" - ARG_REMOVED - """Type is no longer included in the union.""" - TYPE_REMOVED_FROM_UNION - """Field was removed from the input object.""" - FIELD_REMOVED_FROM_INPUT_OBJECT - """Value was removed from the enum.""" - VALUE_REMOVED_FROM_ENUM - """Type no longer implements the interface.""" - TYPE_REMOVED_FROM_INTERFACE - """Non-nullable argument was added to the field.""" - REQUIRED_ARG_ADDED - """Non-nullable field was added to the input object. (Deprecated.)""" - NON_NULLABLE_FIELD_ADDED_TO_INPUT_OBJECT - """Required field was added to the input object.""" - REQUIRED_FIELD_ADDED_TO_INPUT_OBJECT - """Return type for the field was changed.""" - FIELD_CHANGED_TYPE - """Type of the field in the input object was changed.""" - FIELD_ON_INPUT_OBJECT_CHANGED_TYPE - """ - Type was changed from one kind to another. - Ex: scalar to object or enum to union. - """ - TYPE_CHANGED_KIND - """Type of the argument was changed.""" - ARG_CHANGED_TYPE - """Argument was changed from nullable to non-nullable.""" - ARG_CHANGED_TYPE_OPTIONAL_TO_REQUIRED - """A new value was added to the enum.""" - VALUE_ADDED_TO_ENUM - """A new value was added to the enum.""" - TYPE_ADDED_TO_UNION - """Type now implements the interface.""" - TYPE_ADDED_TO_INTERFACE - """Default value added or changed for the argument.""" - ARG_DEFAULT_VALUE_CHANGE - """Nullable argument was added to the field.""" - OPTIONAL_ARG_ADDED - """Nullable field was added to the input type. (Deprecated.)""" - NULLABLE_FIELD_ADDED_TO_INPUT_OBJECT - """Optional field was added to the input type.""" - OPTIONAL_FIELD_ADDED_TO_INPUT_OBJECT - """Field was added to the type.""" - FIELD_ADDED - """Type was added to the schema.""" - TYPE_ADDED - """Enum was deprecated.""" - ENUM_DEPRECATED - """Enum deprecation was removed.""" - ENUM_DEPRECATION_REMOVED - """Reason for enum deprecation changed.""" - ENUM_DEPRECATED_REASON_CHANGE - """Field was deprecated.""" - FIELD_DEPRECATED - """Field deprecation removed.""" - FIELD_DEPRECATION_REMOVED - """Reason for field deprecation changed.""" - FIELD_DEPRECATED_REASON_CHANGE - """Description was added, removed, or updated for type.""" - TYPE_DESCRIPTION_CHANGE - """Description was added, removed, or updated for field.""" - FIELD_DESCRIPTION_CHANGE - """Description was added, removed, or updated for enum value.""" - ENUM_VALUE_DESCRIPTION_CHANGE - """Description was added, removed, or updated for argument.""" - ARG_DESCRIPTION_CHANGE - """Directive was removed.""" - DIRECTIVE_REMOVED - """Argument to the directive was removed.""" - DIRECTIVE_ARG_REMOVED - """Location of the directive was removed.""" - DIRECTIVE_LOCATION_REMOVED - """Repeatable flag was removed for directive.""" - DIRECTIVE_REPEATABLE_REMOVED - """Non-nullable argument added to directive.""" - REQUIRED_DIRECTIVE_ARG_ADDED -} - -""" -Represents the tuple of static information -about a particular kind of schema change. -""" -type ChangeDefinition { - code: ChangeCode! - defaultSeverity: ChangeSeverity! - category: ChangeCategory! -} - -"""An addition made to a Studio variant's changelog after a launch.""" -type ChangelogLaunchResult { - createdAt: Timestamp! - schemaTagID: ID! -} - -"""Info about a change in the context of an operation it affects""" -type ChangeOnOperation { - """The semantic info about this change, i.e. info about the change that doesn't depend on the operation""" - semanticChange: SemanticChange! - """Human-readable explanation of the impact of this change on the operation""" - impact: String -} - -enum ChangeSeverity { - FAILURE - NOTICE -} - -""" -Summary of the changes for a schema diff, computed by placing the changes into categories and then -counting the size of each category. This categorization can be done in different ways, and -accordingly there are multiple fields here for each type of categorization. - -Note that if an object or interface field is added/removed, there won't be any addition/removal -changes generated for its arguments or @deprecated usages. If an enum type is added/removed, there -will be addition/removal changes generated for its values, but not for those values' @deprecated -usages. Description changes won't be generated for a schema element if that element (or an -ancestor) was added/removed. -""" -type ChangeSummary { - """ - Counts for changes to non-field aspects of objects, input objects, and interfaces, - and all aspects of enums, unions, and scalars. - """ - type: TypeChangeSummaryCounts! - """Counts for changes to fields of objects, input objects, and interfaces.""" - field: FieldChangeSummaryCounts! - """Counts for all changes.""" - total: TotalChangeSummaryCounts! -} - -enum ChangeType { - FAILURE - NOTICE -} - -"""Filter options available when listing checks.""" -input CheckFilterInput { - authors: [String!] - branches: [String!] - subgraphs: [String!] - status: CheckFilterInputStatusOption - variants: [String!] -} - -"""Options for filtering CheckWorkflows by status""" -enum CheckFilterInputStatusOption { - FAILED - PENDING - PASSED -} - -"""The result of performing a subgraph check, including all steps.""" -type CheckPartialSchemaResult { - """Result of compostion run as part of the overall subgraph check.""" - compositionValidationResult: CompositionCheckResult! - """Overall result of the check. This will be null if composition validation was unsuccessful.""" - checkSchemaResult: CheckSchemaResult - """Whether any modifications were detected in the composed core schema.""" - coreSchemaModified: Boolean! -} - -"""The possible results of a request to initiate schema checks (either a success object or one of multiple `Error` objects).""" -union CheckRequestResult = CheckRequestSuccess | InvalidInputError | PermissionError | PlanError - -"""Represents a successfully initiated execution of schema checks. This does not indicate the _result_ of the checks, only that they were initiated.""" -type CheckRequestSuccess { - """The URL of the Apollo Studio page for this check.""" - targetURL: String! - """The unique ID for this execution of schema checks.""" - workflowID: ID! -} - -"""Input type to provide when running schema checks asynchronously for a non-federated graph.""" -input CheckSchemaAsyncInput { - """Configuration options for the check execution.""" - config: HistoricQueryParametersInput! - """The GitHub context to associate with the check.""" - gitContext: GitContextInput! - graphRef: ID @deprecated(reason: "This field is not required to be sent anymore") - """The URL of the GraphQL endpoint that Apollo Sandbox introspected to obtain the proposed schema. Required if `isSandbox` is `true`.""" - introspectionEndpoint: String - """If `true`, the check was initiated by Apollo Sandbox.""" - isSandbox: Boolean! - proposedSchemaDocument: String -} - -"""The result of running schema checks on a graph variant.""" -type CheckSchemaResult { - """The schema diff and affected operations generated by the schema check.""" - diffToPrevious: SchemaDiff! - """The URL to view the schema diff in Studio.""" - targetUrl: String -} - -type CheckWorkflow { - """ - The variant provided as a base to check against. Only the differences from the - base schema will be tested in operations checks. - """ - baseVariant: GraphVariant - """The timestamp when the check workflow completed.""" - completedAt: Timestamp - id: ID! - """The name of the implementing service that was responsible for triggering the validation.""" - implementingServiceName: String - """The timestamp when the check workflow started.""" - startedAt: Timestamp - """Overall status of the workflow, based on the underlying task statuses.""" - status: CheckWorkflowStatus! - """The set of check tasks associated with this workflow, e.g. composition, operations, etc.""" - tasks: [CheckWorkflowTask!]! - """Contextual parameters supplied by the runtime environment where the check was run.""" - gitContext: GitContext - createdAt: Timestamp! -} - -enum CheckWorkflowStatus { - FAILED - PASSED - PENDING -} - -interface CheckWorkflowTask { - completedAt: Timestamp - createdAt: Timestamp! - id: ID! - """ - The status of this task. All tasks start with the PENDING status while initializing. If any - prerequisite task fails, then the task status becomes BLOCKED. Otherwise, if all prerequisite - tasks pass, then this task runs (still having the PENDING status). Once the task completes, the - task status will become either PASSED or FAILED. - """ - status: CheckWorkflowTaskStatus! - """A studio UI url to view the details of this check workflow task""" - targetURL: String - """The workflow that this task belongs to.""" - workflow: CheckWorkflow! -} - -enum CheckWorkflowTaskStatus { - BLOCKED - FAILED - PASSED - PENDING -} - -"""Filter options to exclude by client reference ID, client name, and client version.""" -input ClientInfoFilter { - name: String! - """Ignored""" - referenceID: ID - version: String -} - -"""The result of supergraph composition that Studio performed in response to an attempted deletion of a subgraph.""" -type SubgraphRemovalResult { - """A list of errors that occurred during composition. Errors mean that Apollo was unable to compose the graph variant's subgraphs into a supergraph schema. If any errors are present, gateways / routers are not updated.""" - errors: [SchemaCompositionError]! - """Whether this composition result resulted in a new supergraph schema passed to Uplink (`true`), or the build failed for any reason (`false`). For dry runs, this value is `true` if Uplink _would have_ been updated with the result.""" - updatedGateway: Boolean! -} - -"""The result of supergraph composition that Studio performed in response to an attempted publish of a subgraph.""" -type SubgraphPublicationResult { - """The generated composition config, or null if any errors occurred.""" - compositionConfig: CompositionConfig - """A list of errors that occurred during composition. Errors mean that Apollo was unable to compose the graph variant's subgraphs into a supergraph schema. If any errors are present, gateways / routers are not updated.""" - errors: [SchemaCompositionError]! - """Whether this composition result resulted in a new supergraph schema passed to Uplink (`true`), or the build failed for any reason (`false`). For dry runs, this value is `true` if Uplink _would have_ been updated with the result.""" - updatedGateway: Boolean! - """Whether a new subgraph was created as part of this publish.""" - wasCreated: Boolean! - """The URL of the Studio page for this update's associated launch, if available.""" - launchUrl: String - """Human-readable text describing the launch result of the subgraph publish.""" - launchCliCopy: String -} - -type CompositionBuildInput { - subgraphs: [Subgraph!]! - version: String -} - -type CompositionCheckTask implements CheckWorkflowTask { - completedAt: Timestamp - """ - Whether the build's output supergraph core schema differs from that of the active publish for - the workflow's variant at the time this field executed (NOT at the time the check workflow - started). - """ - coreSchemaModified: Boolean! - createdAt: Timestamp! - id: ID! - status: CheckWorkflowTaskStatus! - targetURL: String - workflow: CheckWorkflow! - """ - An old version of buildResult that returns a very old GraphQL type that generally should be - avoided. This field will soon be deprecated. - """ - result: CompositionResult -} - -"""Composition configuration exposed to the gateway.""" -type CompositionConfig { - """The resulting API schema's SHA256 hash, represented as a hexadecimal string.""" - schemaHash: String! -} - -"""The result of supergraph composition that Studio performed.""" -type CompositionPublishResult implements CompositionResult { - """The unique ID for this instance of composition.""" - graphCompositionID: ID! - """A list of errors that occurred during composition. Errors mean that Apollo was unable to compose the graph variant's subgraphs into a supergraph schema. If any errors are present, gateways / routers are not updated.""" - errors: [SchemaCompositionError!]! - """The supergraph SDL generated by composition.""" - supergraphSdl: GraphQLDocument -} - -"""The result of supergraph composition performed by Apollo Studio, often as the result of a subgraph check or subgraph publish. See individual implementations for more details.""" -interface CompositionResult { - """The unique ID for this instance of composition.""" - graphCompositionID: ID! - """A list of errors that occurred during composition. Errors mean that Apollo was unable to compose the graph variant's subgraphs into a supergraph schema. If any errors are present, gateways / routers are not updated.""" - errors: [SchemaCompositionError!]! - """Supergraph SDL generated by composition.""" - supergraphSdl: GraphQLDocument -} - -"""The result of composition validation run by Apollo Studio during a subgraph check.""" -type CompositionCheckResult implements CompositionResult { - """The unique ID for this instance of composition.""" - graphCompositionID: ID! - """A list of errors that occurred during composition. Errors mean that Apollo was unable to compose the graph variant's subgraphs into a supergraph schema. If any errors are present, gateways / routers are not updated.""" - errors: [SchemaCompositionError!]! - """The supergraph schema document generated by composition.""" - supergraphSdl: GraphQLDocument -} - -type ContractVariantUpsertErrors { - """A list of all errors that occurred when attempting to create or update a contract variant.""" - errorMessages: [String!]! -} - -union ContractVariantUpsertResult = ContractVariantUpsertErrors | ContractVariantUpsertSuccess - -type ContractVariantUpsertSuccess { - """The updated contract variant""" - contractVariant: GraphVariant! - """Human-readable text describing the launch result of the contract update.""" - launchCliCopy: String - """The URL of the Studio page for this update's associated launch, if available.""" - launchUrl: String -} - -"""Contains the supergraph and API schemas generated by composition.""" -type CoreSchema { - """The composed API schema document.""" - apiDocument: GraphQLDocument! - """The composed supergraph schema document.""" - coreDocument: GraphQLDocument! - """The supergraph schema document's SHA256 hash, represented as a hexadecimal string.""" - coreHash: String! -} - -union CreateOperationCollectionResult = OperationCollection | PermissionError | ValidationError - -""" -Implement the DateTime<Utc> scalar - -The input/output is a string in RFC3339 format. -""" -scalar DateTime @specifiedBy(url: "https://datatracker.ietf.org/doc/html/rfc3339") - -union DeleteOperationCollectionResult = PermissionError - -"""The result of attempting to delete a graph variant.""" -type GraphVariantDeletionResult { - """Whether the variant was deleted or not.""" - deleted: Boolean! -} - -"""The result of a schema checks workflow that was run on a downstream variant as part of checks for the corresponding source variant. Most commonly, these downstream checks are [contract checks](https://www.apollographql.com/docs/studio/contracts#contract-checks).""" -type DownstreamCheckResult { - """Whether the downstream check workflow blocks the upstream check workflow from completing.""" - blocking: Boolean! - """The ID of the graph that the downstream variant belongs to.""" - downstreamGraphID: String! - """The name of the downstream variant.""" - downstreamVariantName: String! - """ - The downstream checks workflow that this result corresponds to. This value is null - if the workflow hasn't been initialized yet, or if the downstream variant was deleted. - """ - downstreamWorkflow: CheckWorkflow - """ - Whether the downstream check workflow is causing the upstream check workflow to fail. This occurs - when the downstream check workflow is both blocking and failing. This may be null while the - downstream check workflow is pending. - """ - failsUpstreamWorkflow: Boolean - """The downstream checks task that this result corresponds to.""" - workflowTask: DownstreamCheckTask! -} - -type DownstreamCheckTask implements CheckWorkflowTask { - completedAt: Timestamp - createdAt: Timestamp! - id: ID! - """ - A list of results for all downstream checks triggered as part of the source variant's checks workflow. - This value is null if the task hasn't been initialized yet, or if the build task fails (the build task is a - prerequisite to this task). This value is _not_ null _while_ the task is running. The returned list is empty - if the source variant has no downstream variants. - """ - results: [DownstreamCheckResult!] - status: CheckWorkflowTaskStatus! - targetURL: String - workflow: CheckWorkflow! -} - -interface Error { - message: String! -} - -"""A single subgraph in a supergraph. Every supergraph managed by Apollo Studio includes at least one subgraph. See https://www.apollographql.com/docs/federation/managed-federation/overview/ for more information.""" -type GraphVariantSubgraph { - """The subgraph's name.""" - name: String! - """The URL of the subgraph's GraphQL endpoint.""" - url: String - """The current user-provided version/edition of the subgraph. Typically a Git SHA or docker image ID.""" - revision: String! - """The ID of the graph this subgraph belongs to.""" - graphID: String! - """The name of the graph variant this subgraph belongs to.""" - graphVariant: String! - """The subgraph's current active schema, used in supergraph composition for the the associated variant.""" - activePartialSchema: SubgraphSchema! - """The timestamp when the subgraph was created.""" - createdAt: Timestamp! - """The timestamp when the subgraph was most recently updated.""" - updatedAt: Timestamp! -} - -"""Container for a list of subgraphs composing a supergraph.""" -type GraphVariantSubgraphs { - """The list of underlying subgraphs.""" - services: [GraphVariantSubgraph!]! -} - -"""Counts of changes at the field level, including objects, interfaces, and input fields.""" -type FieldChangeSummaryCounts { - """Number of changes that are additions of fields to object, interface, and input types.""" - additions: Int! - """Number of changes that are removals of fields from object, interface, and input types.""" - removals: Int! - """ - Number of changes that are field edits. This includes fields changing type and any field - deprecation and description changes, but also includes any argument changes and any input object - field changes. - """ - edits: Int! -} - -"""Inputs provided to the build for a contract variant, which filters types and fields from a source variant's schema.""" -type FilterBuildInput { - """Schema filtering rules for the build, such as tags to include or exclude from the source variant schema.""" - filterConfig: FilterConfig! - """The source variant schema document's SHA256 hash, represented as a hexadecimal string.""" - schemaHash: String! -} - -type FilterCheckTask implements CheckWorkflowTask { - completedAt: Timestamp - createdAt: Timestamp! - id: ID! - status: CheckWorkflowTaskStatus! - targetURL: String - workflow: CheckWorkflow! -} - -"""The filter configuration used to build a contract schema. The configuration consists of lists of tags for schema elements to include or exclude in the resulting schema.""" -type FilterConfig { - """Tags of schema elements to exclude from the contract schema.""" - exclude: [String!]! - """Tags of schema elements to include in the contract schema.""" - include: [String!]! -} - -input FilterConfigInput { - """A list of tags for schema elements to exclude from the resulting contract schema.""" - exclude: [String!]! - """ - Whether to hide unreachable objects, interfaces, unions, inputs, enums and scalars from - the resulting contract schema. Defaults to `false`. - """ - hideUnreachableTypes: Boolean! = false - """A list of tags for schema elements to include in the resulting contract schema.""" - include: [String!]! -} - -type GitContext { - commit: ID -} - -"""Input type to provide when specifying the Git context for a run of schema checks.""" -input GitContextInput { - """The Git repository branch used in the check.""" - branch: String - """The ID of the Git commit used in the check.""" - commit: ID - """The username of the user who created the Git commit used in the check.""" - committer: String - """The commit message of the Git commit used in the check.""" - message: String - """The Git repository's remote URL.""" - remoteUrl: String -} - -""" -Represents a graph API key, which has permissions scoped to a -user role for a single Apollo graph. -""" -type GraphApiKey implements ApiKey { - """The timestamp when the API key was created.""" - createdAt: Timestamp! - """Details of the user or graph that created the API key.""" - createdBy: Identity - """The API key's ID.""" - id: ID! - """The API key's name, for distinguishing it from other keys.""" - keyName: String - """The permission level assigned to the API key upon creation.""" - role: UserPermission! - """The value of the API key. **This is a secret credential!**""" - token: String! -} - -"""A union of all containers that can comprise the components of a Studio graph""" -union GraphImplementors = GraphVariantSubgraphs - -"""A GraphQL document, such as the definition of an operation or schema.""" -scalar GraphQLDocument - -"""A graph variant""" -type GraphVariant { - """The variant's global identifier in the form `graphID@variant`.""" - id: ID! - router: Router - """The filter configuration used to build a contract schema. The configuration consists of lists of tags for schema elements to include or exclude in the resulting schema.""" - contractFilterConfig: FilterConfig - """ - A human-readable description of the filter configuration of this contract variant, or null if this isn't a contract - variant. - """ - contractFilterConfigDescription: String - """The graph that this variant belongs to.""" - graph: Graph! - """Latest approved launch for the variant, and what is served through Uplink.""" - latestApprovedLaunch: Launch - """Latest launch for the variant, whether successful or not.""" - latestLaunch: Launch - """The variant's name (e.g., `staging`).""" - name: String! - """Which permissions the current user has for interacting with this variant""" - permissions: GraphVariantPermissions! - readme: Readme! - """The variant this variant is derived from. This property currently only exists on contract variants.""" - sourceVariant: GraphVariant - """A list of the saved [operation collections](https://www.apollographql.com/docs/studio/explorer/operation-collections/) associated with this variant.""" - operationCollections: [OperationCollection!]! - """The URL of the variant's GraphQL endpoint for query and mutation operations. For subscription operations, use `subscriptionUrl`.""" - url: String - """The URL of the variant's GraphQL endpoint for subscription operations.""" - subscriptionUrl: String - """The details of the variant's most recent publication.""" - latestPublication: SchemaPublication - """A list of the subgraphs included in this variant. This value is null for non-federated variants. Set `includeDeleted` to `true` to include deleted subgraphs.""" - subgraphs(includeDeleted: Boolean! = false): [GraphVariantSubgraph!] - """Returns the details of the subgraph with the provided `name`, or null if this variant doesn't include a subgraph with that name.""" - subgraph(name: ID!): GraphVariantSubgraph -} - -"""Result of looking up a variant by ref""" -union GraphVariantLookup = GraphVariant | InvalidRefFormat - -"""Modifies a variant of a graph, also called a schema tag in parts of our product.""" -type GraphVariantMutation { - """ - _Asynchronously_ kicks off operation checks for a proposed non-federated - schema change against its associated graph. - - Returns a `CheckRequestSuccess` object with a workflow ID that you can use - to check status, or an error object if the checks workflow failed to start. - """ - submitCheckSchemaAsync(input: CheckSchemaAsyncInput!): CheckRequestResult! - """ - _Asynchronously_ kicks off composition and operation checks for a proposed subgraph schema change against its associated supergraph. - - Returns a `CheckRequestSuccess` object with a workflow ID that you can use - to check status, or an error object if the checks workflow failed to start. - """ - submitSubgraphCheckAsync(input: SubgraphCheckAsyncInput!): CheckRequestResult! - """Updates the [README](https://www.apollographql.com/docs/studio/org/graphs/#the-readme-page) of this variant.""" - updateVariantReadme( - """The full new text of the README, as a Markdown-formatted string.""" - readme: String! - ): GraphVariant - """Delete the variant.""" - delete: GraphVariantDeletionResult! -} - -"""Individual permissions for the current user when interacting with a particular Studio graph variant.""" -type GraphVariantPermissions { - """Whether the currently authenticated user is permitted to manage/update this variant's build configuration (e.g., build pipeline version).""" - canManageBuildConfig: Boolean! - """Whether the currently authenticated user is permitted to manage/update cloud routers""" - canManageCloudRouter: Boolean! - """Whether the currently authenticated user is permitted to update variant-level settings for the Apollo Studio Explorer.""" - canManageExplorerSettings: Boolean! - """Whether the currently authenticated user is permitted to publish schemas to this variant.""" - canPushSchemas: Boolean! - """Whether the currently authenticated user is permitted to view this variant's build configuration details (e.g., build pipeline version).""" - canQueryBuildConfig: Boolean! - """Whether the currently authenticated user is permitted to view details regarding cloud routers""" - canQueryCloudRouter: Boolean! - """Whether the currently authenticated user is permitted to view cloud router logs""" - canQueryCloudRouterLogs: Boolean! - """Whether the currently authenticated user is permitted to download schemas associated to this variant.""" - canQuerySchemas: Boolean! - """Whether the currently authenticated user is permitted to update the README for this variant.""" - canUpdateVariantReadme: Boolean! - canCreateCollectionInVariant: Boolean! - canShareCollectionInVariant: Boolean! -} - -input HistoricQueryParameters { - from: String = "-86400" - to: String = "0" - """Minimum number of requests within the window for a query to be considered.""" - queryCountThreshold: Int = 1 - """ - Number of requests within the window for a query to be considered, relative to - total request count. Expected values are between 0 and 0.05 (minimum 5% of total - request volume) - """ - queryCountThresholdPercentage: Float = 0 - """A list of operation IDs to filter out during validation.""" - ignoredOperations: [ID!] = null - """A list of clients to filter out during validation.""" - excludedClients: [ClientInfoFilter!] = null - """A list of operation names to filter out during validation.""" - excludedOperationNames: [OperationNameFilterInput!] = null - """ - A list of variants to include in the validation. If no variants are provided - then this defaults to the "current" variant along with the base variant. The - base variant indicates the schema that generates diff and marks the metrics that - are checked for broken queries. We union this base variant with the untagged values('', - same as null inside of `in`, and 'current') in this metrics fetch. This strategy - supports users who have not tagged their metrics or schema. - """ - includedVariants: [String!] = null -} - -"""Input type to provide when specifying configuration details for schema checks.""" -input HistoricQueryParametersInput { - """Clients to be excluded from check.""" - excludedClients: [ClientInfoFilter!] - """Operations to be ignored in this schema check, specified by operation name.""" - excludedOperationNames: [OperationNameFilterInput!] - """Start time for operations to be checked against. Specified as either a) an ISO formatted date/time string or b) a negative number of seconds relative to the time the check request was submitted.""" - from: String - """Operations to be ignored in this schema check, specified by ID.""" - ignoredOperations: [ID!] - """Graph variants to be included in check.""" - includedVariants: [String!] - """Maximum number of queries to be checked against the change.""" - queryCountThreshold: Int - """Only fail check if this percentage of operations would be negatively impacted.""" - queryCountThresholdPercentage: Float - """End time for operations to be checked against. Specified as either a) an ISO formatted date/time string or b) a negative number of seconds relative to the time the check request was submitted.""" - to: String -} - -"""An identity (such as a `User` or `Graph`) in Apollo Studio. See implementing types for details.""" -interface Identity { - """Returns a representation of the identity as an `Actor` type.""" - asActor: Actor! - """The identity's identifier, which is unique among objects of its type.""" - id: ID! - """The identity's human-readable name.""" - name: String! -} - -type InternalIdentity implements Identity { - accounts: [Organization!]! - asActor: Actor! - email: String - id: ID! - name: String! -} - -input IntrospectionDirectiveInput { - name: String! - description: String - locations: [IntrospectionDirectiveLocation!]! - args: [IntrospectionInputValueInput!]! - isRepeatable: Boolean -} - -"""__DirectiveLocation introspection type""" -enum IntrospectionDirectiveLocation { - """Location adjacent to a query operation.""" - QUERY - """Location adjacent to a mutation operation.""" - MUTATION - """Location adjacent to a subscription operation.""" - SUBSCRIPTION - """Location adjacent to a field.""" - FIELD - """Location adjacent to a fragment definition.""" - FRAGMENT_DEFINITION - """Location adjacent to a fragment spread.""" - FRAGMENT_SPREAD - """Location adjacent to an inline fragment.""" - INLINE_FRAGMENT - """Location adjacent to a variable definition.""" - VARIABLE_DEFINITION - """Location adjacent to a schema definition.""" - SCHEMA - """Location adjacent to a scalar definition.""" - SCALAR - """Location adjacent to an object type definition.""" - OBJECT - """Location adjacent to a field definition.""" - FIELD_DEFINITION - """Location adjacent to an argument definition.""" - ARGUMENT_DEFINITION - """Location adjacent to an interface definition.""" - INTERFACE - """Location adjacent to a union definition.""" - UNION - """Location adjacent to an enum definition.""" - ENUM - """Location adjacent to an enum value definition.""" - ENUM_VALUE - """Location adjacent to an input object type definition.""" - INPUT_OBJECT - """Location adjacent to an input object field definition.""" - INPUT_FIELD_DEFINITION -} - -"""__EnumValue introspection type""" -input IntrospectionEnumValueInput { - name: String! - description: String - isDeprecated: Boolean! - deprecationReason: String -} - -"""__Field introspection type""" -input IntrospectionFieldInput { - name: String! - description: String - args: [IntrospectionInputValueInput!]! - type: IntrospectionTypeInput! - isDeprecated: Boolean! - deprecationReason: String -} - -"""__Value introspection type""" -input IntrospectionInputValueInput { - name: String! - description: String - type: IntrospectionTypeInput! - defaultValue: String - isDeprecated: Boolean - deprecationReason: String -} - -"""__Schema introspection type""" -input IntrospectionSchemaInput { - types: [IntrospectionTypeInput!] - queryType: IntrospectionTypeRefInput! - mutationType: IntrospectionTypeRefInput - subscriptionType: IntrospectionTypeRefInput - directives: [IntrospectionDirectiveInput!]! - description: String -} - -"""__Type introspection type""" -input IntrospectionTypeInput { - kind: IntrospectionTypeKind! - name: String - description: String - specifiedByUrl: String - fields: [IntrospectionFieldInput!] - interfaces: [IntrospectionTypeInput!] - possibleTypes: [IntrospectionTypeInput!] - enumValues: [IntrospectionEnumValueInput!] - inputFields: [IntrospectionInputValueInput!] - ofType: IntrospectionTypeInput -} - -enum IntrospectionTypeKind { - """Indicates this type is a scalar.""" - SCALAR - """Indicates this type is an object. 'fields' and 'interfaces' are valid fields.""" - OBJECT - """ - Indicates this type is an interface. 'fields' and 'possibleTypes' are valid - fields - """ - INTERFACE - """Indicates this type is a union. 'possibleTypes' is a valid field.""" - UNION - """Indicates this type is an enum. 'enumValues' is a valid field.""" - ENUM - """Indicates this type is an input object. 'inputFields' is a valid field.""" - INPUT_OBJECT - """Indicates this type is a list. 'ofType' is a valid field.""" - LIST - """Indicates this type is a non-null. 'ofType' is a valid field.""" - NON_NULL -} - -"""Shallow __Type introspection type""" -input IntrospectionTypeRefInput { - name: String! - kind: String -} - -"""An error caused by providing invalid input for a task, such as schema checks.""" -type InvalidInputError { - """The error message.""" - message: String! -} - -"""This object is returned when a request to fetch a Studio graph variant provides an invalid graph ref.""" -type InvalidRefFormat implements Error { - message: String! -} - -"""Represents the complete process of making a set of updates to a deployed graph variant.""" -type Launch { - """The unique identifier for this launch.""" - id: ID! - """The ID of the launch's associated graph.""" - graphId: String! - """The name of the launch's associated variant.""" - graphVariant: String! - order: OrderOrError! - """The timestamp when the launch was approved.""" - approvedAt: Timestamp - """The associated build for this launch (a build includes schema composition and contract filtering). This value is null until the build is initiated.""" - build: Build - """The inputs provided to this launch's associated build, including subgraph schemas and contract filters.""" - buildInput: BuildInput! - """The timestamp when the launch completed. This value is null until the launch completes.""" - completedAt: Timestamp - """The timestamp when the launch was initiated.""" - createdAt: Timestamp! - """Contract launches that were triggered by this launch.""" - downstreamLaunches: [Launch!]! - """Whether the launch completed.""" - isCompleted: Boolean - """Whether the result of the launch has been published to the associated graph and variant. This is always false for a failed launch.""" - isPublished: Boolean - """The most recent launch sequence step that has started but not necessarily completed.""" - latestSequenceStep: LaunchSequenceStep - """A specific publication of a graph variant pertaining to this launch.""" - publication: SchemaPublication - """A list of results from the completed launch. The items included in this list vary depending on whether the launch succeeded, failed, or was superseded.""" - results: [LaunchResult!]! - """Cloud router configuration associated with this build event. It will be non-null for any cloud-router variant, and null for any not cloudy variant/graph.""" - routerConfig: String - """A list of all serial steps in the launch sequence. This list can change as the launch progresses. For example, a `LaunchCompletedStep` is appended after a launch completes.""" - sequence: [LaunchSequenceStep!]! - """A shortened version of `Launch.id` that includes only the first 8 characters.""" - shortenedID: String! - """The launch's status. If a launch is superseded, its status remains `LAUNCH_INITIATED`. To check for a superseded launch, use `supersededAt`.""" - status: LaunchStatus! - """A list of subgraph changes that are included in this launch.""" - subgraphChanges: [SubgraphChange!] - """The timestamp when this launch was superseded by another launch. If an active launch is superseded, it terminates.""" - supersededAt: Timestamp - """The launch that superseded this launch, if any. If an active launch is superseded, it terminates.""" - supersededBy: Launch - """The source variant launch that caused this launch to be initiated. This value is present only for contract variant launches. Otherwise, it's null.""" - upstreamLaunch: Launch -} - -"""Types of results that can be associated with a `Launch`""" -union LaunchResult = ChangelogLaunchResult - -"""The timing details for the build step of a launch.""" -type LaunchSequenceBuildStep { - """The timestamp when the step completed.""" - completedAt: Timestamp - """The timestamp when the step started.""" - startedAt: Timestamp -} - -"""The timing details for the checks step of a launch.""" -type LaunchSequenceCheckStep { - """The timestamp when the step completed.""" - completedAt: Timestamp - """The timestamp when the step started.""" - startedAt: Timestamp -} - -"""The timing details for the completion step of a launch.""" -type LaunchSequenceCompletedStep { - """The timestamp when the step (and therefore the launch) completed.""" - completedAt: Timestamp -} - -"""The timing details for the initiation step of a launch.""" -type LaunchSequenceInitiatedStep { - """The timestamp when the step (and therefore the launch) started.""" - startedAt: Timestamp -} - -"""The timing details for the publish step of a launch.""" -type LaunchSequencePublishStep { - """The timestamp when the step completed.""" - completedAt: Timestamp - """The timestamp when the step started.""" - startedAt: Timestamp -} - -"""Represents the various steps that occur in sequence during a single launch.""" -union LaunchSequenceStep = LaunchSequenceBuildStep | LaunchSequenceCheckStep | LaunchSequenceCompletedStep | LaunchSequenceInitiatedStep | LaunchSequencePublishStep | LaunchSequenceSupersededStep - -"""The timing details for the superseded step of a launch. This step occurs only if the launch is superseded by another launch.""" -type LaunchSequenceSupersededStep { - """The timestamp when the step completed, thereby ending the execution of this launch in favor of the superseding launch.""" - completedAt: Timestamp -} - -enum LaunchStatus { - LAUNCH_COMPLETED - LAUNCH_FAILED - LAUNCH_INITIATED -} - -enum LogLevel { - WARN - INFO - ERROR - DEBUG -} - -type LogMessage { - """Timestamp in UTC""" - timestamp: DateTime! - """Log message contents""" - message: String! - """Log level""" - level: LogLevel! -} - -type Mutation { - """Provides access to mutation fields for modifying a Studio graph with the provided ID.""" - graph(id: ID!): GraphMutation - """ - Provides access to mutation fields for modifying an Apollo user with the - provided ID. - """ - user(id: ID!): UserMutation - """Creates an [operation collection](https://www.apollographql.com/docs/studio/explorer/operation-collections/) for a given variant, or creates a [sandbox collection](https://www.apollographql.com/docs/studio/explorer/operation-collections/#sandbox-collections) without an associated variant.""" - createOperationCollection( - """The collection's description.""" - description: String - """Whether the collection is a [sandbox collection](https://www.apollographql.com/docs/studio/explorer/operation-collections/#sandbox-collections).""" - isSandbox: Boolean! - """Whether the collection is shared across its associated organization.""" - isShared: Boolean! - """The minimum role a user needs to edit this collection. Valid values: null, CONSUMER, OBSERVER, DOCUMENTER, CONTRIBUTOR, GRAPH_ADMIN. This value is ignored if `isShared` is `false`. The default value is `GRAPH_ADMIN`.""" - minEditRole: UserPermission - """The collection's name.""" - name: String! - """The [graph ref](https://www.apollographql.com/docs/rover/conventions/#graph-refs) of the graph variants to associate the collection with.""" - variantRefs: [ID!] - ): CreateOperationCollectionResult! - operationCollection(id: ID!): OperationCollectionMutation -} - -""" -ISO 8601 combined date and time without timezone. - -# Examples - -* `2015-07-01T08:59:60.123`, -""" -scalar NaiveDateTime - -type NamedIntrospectionArg { - name: String - description: String -} - -""" -The shared fields for a named introspection type. Currently this is returned for the -top level value affected by a change. In the future, we may update this -type to be an interface, which is extended by the more specific types: -scalar, object, input object, union, interface, and enum - -For an in-depth look at where these types come from, see: -https://github.com/DefinitelyTyped/DefinitelyTyped/blob/659eb50d3/types/graphql/utilities/introspectionQuery.d.ts#L31-L37 -""" -type NamedIntrospectionType { - kind: IntrospectionTypeKind - name: String - description: String -} - -""" -Introspection values that can be children of other types for changes, such -as input fields, objects in interfaces, enum values. In the future, this -value could become an interface to allow fields specific to the types -returned. -""" -type NamedIntrospectionValue { - name: String - description: String - printedType: String -} - -"""An error that occurs when a requested object is not found.""" -type NotFoundError implements Error { - """The error message.""" - message: String! -} - -"""A list of saved GraphQL operations.""" -type OperationCollection { - """The timestamp when the collection was created.""" - createdAt: Timestamp! - """The user or other entity that created the collection.""" - createdBy: Identity - """The collection's description. A `null` description was never set, and empty string description was set to be empty string by a user, or other entity.""" - description: String - id: ID! - """Whether the current user has marked the collection as a favorite.""" - isFavorite: Boolean! - """Whether the collection is a [sandbox collection](https://www.apollographql.com/docs/studio/explorer/operation-collections/#sandbox-collections).""" - isSandbox: Boolean! - """Whether the collection is shared across its associated organization.""" - isShared: Boolean! - """The timestamp when the collection was most recently updated.""" - lastUpdatedAt: Timestamp! - """The user or other entity that most recently updated the collection.""" - lastUpdatedBy: Identity - """The minimum role a user needs to edit this collection. Valid values: null, CONSUMER, OBSERVER, DOCUMENTER, CONTRIBUTOR, GRAPH_ADMIN. This value is always `null` if `isShared` is `false`. If `null` when `isShared` is `true`, the minimum role is `GRAPH_ADMIN`.""" - minEditRole: UserPermission - """The collection's name.""" - name: String! - """Returns the operation in the collection with the specified ID, if any.""" - operation(id: ID!): OperationCollectionEntryResult - """A list of the GraphQL operations that belong to the collection.""" - operations: [OperationCollectionEntry!]! - """The permissions that the current user has for the collection.""" - permissions: OperationCollectionPermissions! -} - -"""A saved operation entry within an Operation Collection.""" -type OperationCollectionEntry { - """The timestamp when the entry was created.""" - createdAt: Timestamp! - """The user or other entity that created the entry.""" - createdBy: Identity - """Details of the entry's associated operation, such as its `body` and `variables`.""" - currentOperationRevision: OperationCollectionEntryState! - id: ID! - """The timestamp when the entry was most recently updated.""" - lastUpdatedAt: Timestamp! - """The user or other entity that most recently updated the entry.""" - lastUpdatedBy: Identity - """The entry's name.""" - name: String! - """The entry's lexicographical ordering index within its containing collection.""" - orderingIndex: String! -} - -"""Provides fields for modifying an operation in a collection.""" -type OperationCollectionEntryMutation { - """Updates the name of an operation.""" - updateName(name: String!): UpdateOperationCollectionEntryResult - """Updates the body, headers, and/or variables of an operation.""" - updateValues(operationInput: OperationCollectionEntryStateInput!): UpdateOperationCollectionEntryResult -} - -union OperationCollectionEntryMutationResult = NotFoundError | OperationCollectionEntryMutation | PermissionError - -"""Possible return values when querying for an entry in an operation collection (either the entry object or an `Error` object).""" -union OperationCollectionEntryResult = NotFoundError | OperationCollectionEntry - -"""The most recent body, variable and header values of a saved operation entry.""" -type OperationCollectionEntryState { - """The raw body of the entry's GraphQL operation.""" - body: String! - """Headers for the entry's GraphQL operation.""" - headers: [OperationHeader!] - """Variables for the entry's GraphQL operation, as a JSON string.""" - variables: String -} - -"""Fields for creating or modifying an operation collection entry.""" -input OperationCollectionEntryStateInput { - """The operation's query body.""" - body: String! - """The operation's headers.""" - headers: [OperationHeaderInput!] - """The operation's variables.""" - variables: String -} - -"""Provides fields for modifying an [operation collection](https://www.apollographql.com/docs/studio/explorer/operation-collections/).""" -type OperationCollectionMutation { - """Adds an operation to this collection.""" - addOperation(name: String!, operationInput: OperationCollectionEntryStateInput!): AddOperationCollectionEntryResult - """Adds operations to this collection.""" - addOperations(operations: [AddOperationInput!]!): AddOperationCollectionEntriesResult - """Deletes this operation collection. This also deletes all of the collection's associated operations.""" - delete: DeleteOperationCollectionResult - """Deletes an operation from this collection.""" - deleteOperation(id: ID!): RemoveOperationCollectionEntryResult - operation(id: ID!): OperationCollectionEntryMutationResult - """Updates the minimum role a user needs to be able to modify this collection.""" - setMinEditRole(editRole: UserPermission): UpdateOperationCollectionResult - """Updates this collection's description.""" - updateDescription(description: String): UpdateOperationCollectionResult - """Updates whether the current user has marked this collection as a favorite.""" - updateIsFavorite(isFavorite: Boolean!): UpdateOperationCollectionResult - """Updates whether this collection is shared across its associated organization.""" - updateIsShared(isShared: Boolean!): UpdateOperationCollectionResult - """Updates this operation collection's name.""" - updateName(name: String!): UpdateOperationCollectionResult -} - -"""Whether the current user can perform various actions on the associated collection.""" -type OperationCollectionPermissions { - """Whether the current user can edit operations in the associated collection.""" - canEditOperations: Boolean! - """Whether the current user can delete or update the associated collection's metadata, such as its name and description.""" - canManage: Boolean! - """Whether the current user can read operations in the associated collection.""" - canReadOperations: Boolean! -} - -union OperationCollectionResult = NotFoundError | OperationCollection | PermissionError | ValidationError - -"""Saved headers on a saved operation.""" -type OperationHeader { - """The header's name.""" - name: String! - """The header's value.""" - value: String! -} - -input OperationHeaderInput { - """The header's name.""" - name: String! - """The header's value.""" - value: String! -} - -"""Options to filter by operation name.""" -input OperationNameFilterInput { - """name of the operation set by the user and reported alongside metrics""" - name: String! - version: String -} - -type OperationsCheckResult { - id: ID! - """Indication of the success of the change, either failure, warning, or notice.""" - checkSeverity: ChangeSeverity! - """Number of operations that were validated during schema diff""" - numberOfCheckedOperations: Int! - """List of schema changes with associated affected clients and operations""" - changes: [Change!]! - """Summary/counts for all changes in diff""" - changeSummary: ChangeSummary! - """Operations affected by all changes in diff""" - affectedQueries: [AffectedQuery!] - """Number of affected query operations that are neither marked as SAFE or IGNORED""" - numberOfAffectedOperations: Int! - createdAt: Timestamp! -} - -type OperationsCheckTask implements CheckWorkflowTask { - completedAt: Timestamp - createdAt: Timestamp! - id: ID! - status: CheckWorkflowTaskStatus! - targetURL: String - workflow: CheckWorkflow! - """ - The result of the operations check. This will be null when the task is initializing or running, - or when the build task fails (which is a prerequisite task to this one). - """ - result: OperationsCheckResult -} - -type Order { - id: ID! - orderType: OrderType! - status: OrderStatus! - reason: String - logs(first: Int, offset: Int): [LogMessage!]! - router: Router! -} - -union OrderOrError = Order - -enum OrderStatus { - PENDING - COMPLETED - ROLLING_BACK - ERRORED - SUPERSEDED -} - -enum OrderType { - CREATE_ROUTER - DESTROY_ROUTER - UPDATE_ROUTER -} - -"""The schema for a single published subgraph in Studio.""" -type SubgraphSchema { - """The subgraph schema document as SDL.""" - sdl: String! -} - -""" -Input for registering a partial schema to an implementing service. -One of the fields must be specified (validated server-side). - -If a new partialSchemaSDL is passed in, this operation will store it before -creating the association. - -If both the sdl and hash are specified, an error will be thrown if the provided -hash doesn't match our hash of the sdl contents. If the sdl field is specified, -the hash does not need to be and will be computed server-side. -""" -input PartialSchemaInput { - """ - Contents of the partial schema in SDL syntax, but may reference types - that aren't defined in this document - """ - sdl: String - """ - Hash of the partial schema to associate; error is thrown if only the hash is - specified and the hash has not been seen before - """ - hash: String -} - -"""An error that occurs when the current user doesn't have sufficient permissions to perform an action.""" -type PermissionError implements Error { - """The error message.""" - message: String! -} - -"""An error related to an organization's Apollo Studio plan.""" -type PlanError { - """The error message.""" - message: String! -} - -type Query { - """Returns the root URL of the Apollo Studio frontend.""" - frontendUrlRoot: String! - """Returns details of the graph with the provided ID.""" - graph(id: ID!): Graph - """Returns details of the authenticated `User` or `Graph` executing this query. If this is an unauthenticated query (i.e., no API key is provided), this field returns null.""" - me: Identity - """Returns details of the Studio organization with the provided ID.""" - organization(id: ID!): Organization - """Returns details of the Apollo user with the provided ID.""" - user(id: ID!): User - """Returns details of a Studio graph variant with the provided graph ref. A graph ref has the format `graphID@variantName` (or just `graphID` for the default variant `current`). Returns null if the graph or variant doesn't exist, or if the graph isn't accessible by the current actor.""" - variant(ref: ID!): GraphVariantLookup - """Returns the [operation collection](https://www.apollographql.com/docs/studio/explorer/operation-collections/) for the provided ID.""" - operationCollection(id: ID!): OperationCollectionResult! -} - -"""The README documentation for a graph variant, which is displayed in Studio.""" -type Readme { - """The contents of the README in plaintext.""" - content: String! - """The README's unique ID. `a15177c0-b003-4837-952a-dbfe76062eb1` for the default README""" - id: ID! - """The actor that most recently updated the README (usually a `User`). `null` for the default README, or if the `User` was deleted.""" - lastUpdatedBy: Identity - """The timestamp when the README was most recently updated. `null` for the default README""" - lastUpdatedTime: Timestamp -} - -union RemoveOperationCollectionEntryResult = OperationCollection | PermissionError - -type Router { - """ - Last time when the Cloud Router was updated - - If the Cloud Router was never updated, this value will be null - """ - updatedAt: NaiveDateTime - """Current status of the Cloud Router""" - status: RouterStatus! - """Current version of the Cloud Router""" - routerVersion: RouterVersion! - """ - URL where the Cloud Router can be found - - This will be null if the Cloud Router is in a deleted status - """ - routerUrl: String - """Retrieves a specific Order related to this Cloud Router""" - order(orderId: ID!): Order - """Retrieves all Orders related to this Cloud Router""" - orders(first: Int, offset: Int): [Order!]! - """Return the list of secrets for this Cloud Router with their hash values""" - secrets: [Secret!]! -} - -enum RouterStatus { - CREATING - UPDATING - DELETING - ROLLING_BACK - RUNNING - DELETED -} - -type RouterVersion { - version: String! - core: String! - build: String! - status: Status! - configVersion: String! - configSchema: String! -} - -"""A GraphQL schema document and associated metadata.""" -type Schema { - """The GraphQL schema document's SHA256 hash, represented as a hexadecimal string.""" - hash: ID! - """The GraphQL schema document.""" - document: GraphQLDocument! -} - -"""An error that occurred while running schema composition on a set of subgraph schemas.""" -type SchemaCompositionError { - """A human-readable message describing the error.""" - message: String! - """Source locations related to the error.""" - locations: [SourceLocation]! - """A machine-readable error code.""" - code: String -} - -"""The result of computing the difference between two schemas, usually as part of schema checks.""" -type SchemaDiff { - """Indicates the overall safety of the changes included in the diff, based on operation history (e.g., `FAILURE` or `NOTICE`).""" - severity: ChangeSeverity! - """A list of all schema changes in the diff, including their severity.""" - changes: [Change!]! - """Numeric summaries for each type of change in the diff.""" - changeSummary: ChangeSummary! - """Operations affected by all changes in the diff.""" - affectedQueries: [AffectedQuery!] - """The number of GraphQL operations that were validated during the check.""" - numberOfCheckedOperations: Int - """The number of GraphQL operations affected by the diff's changes that are neither marked as safe nor ignored.""" - numberOfAffectedOperations: Int! -} - -"""Contains details for an individual publication of an individual graph variant.""" -type SchemaPublication { - """ - The variant that was published to." - """ - variant: GraphVariant! - """The schema that was published to the variant.""" - schema: Schema! - """The result of federated composition executed for this publication. This result includes either a supergraph schema or error details, depending on whether composition succeeded. This value is null when the publication is for a non-federated graph.""" - compositionResult: CompositionResult - """The timestamp when the variant was published to.""" - publishedAt: Timestamp! - """A schema diff comparing against the schema from the most recent previous successful publication.""" - diffToPrevious: SchemaDiff -} - -type Secret { - createdAt: DateTime! - name: String! - hash: String! -} - -type SemanticChange { - """Semantic metadata about the type of change""" - definition: ChangeDefinition! - """Top level node affected by the change""" - parentNode: NamedIntrospectionType - """ - Node related to the top level node that was changed, such as a field in an object, - a value in an enum or the object of an interface - """ - childNode: NamedIntrospectionValue - """Target arg of change made.""" - argNode: NamedIntrospectionArg -} - -""" -A graph in Apollo Studio represents a graph in your organization. -Each graph has one or more variants, which correspond to the different environments where that graph runs (such as staging and production). -Each variant has its own GraphQL schema, which means schemas can differ between environments. -""" -type Graph implements Identity { - """The organization that this graph belongs to.""" - account: Organization - """A list of the graph API keys that are active for this graph.""" - apiKeys: [GraphApiKey!] - """Provides a view of the graph as an `Actor` type.""" - asActor: Actor! - """Get a check workflow for this graph by its ID""" - checkWorkflow(id: ID!): CheckWorkflow - """The graph's globally unique identifier.""" - id: ID! - """Permissions of the current user in this graph.""" - myRole: UserPermission - name: String! - """Describes the permissions that the active user has for this graph.""" - roles: GraphRoles - """The graph's name.""" - title: String! - """ - Provides details of the graph variant with the provided `name`, if a variant - with that name exists for this graph. Otherwise, returns null. - - For a list of _all_ variants associated with a graph, use `Graph.variants` instead. - """ - variant(name: String!): GraphVariant - """A list of the variants for this graph.""" - variants: [GraphVariant!]! - """Get a GraphQL document by hash""" - document(hash: SHA256): GraphQLDocument - """Get check workflows for this graph ordered by creation time, most recent first.""" - checkWorkflows(limit: Int! = 100, filter: CheckFilterInput): [CheckWorkflow!]! -} - -"""Provides access to mutation fields for managing Studio graphs and subgraphs.""" -type GraphMutation { - """Generates a new graph API key for this graph with the specified permission level.""" - newKey(keyName: String, role: UserPermission! = GRAPH_ADMIN): GraphApiKey! - """Deletes the existing graph API key with the provided ID, if any.""" - removeKey( - """API key ID""" - id: ID! - ): Void - """Sets a new name for the graph API key with the provided ID, if any. This does not invalidate the key or change its value.""" - renameKey(id: ID!, newKeyName: String): GraphApiKey - """Creates a contract schema from a source variant and a set of filter configurations""" - upsertContractVariant( - """The name of the contract variant, e.g. `public-api`. Once set, this value cannot be changed.""" - contractVariantName: String! - """The filter configuration used to build a contract schema. The configuration consists of lists of tags for schema elements to include or exclude in the resulting schema.""" - filterConfig: FilterConfigInput! - """Whether a launch and schema publish should be initiated after updating configuration. Defaults to `true`.""" - initiateLaunch: Boolean! = true - """The graphRef of the variant the contract will be derived from, e.g. `my-graph@production`. Once set, this value cannot be changed.""" - sourceVariant: String - ): ContractVariantUpsertResult! - """Make changes to a graph variant.""" - variant(name: String!): GraphVariantMutation - """Publish a schema to this variant, either via a document or an introspection query result.""" - uploadSchema(schema: IntrospectionSchemaInput, schemaDocument: String, tag: String!, historicParameters: HistoricQueryParameters, overrideComposedSchema: Boolean! = false, errorOnBadRequest: Boolean! = true, gitContext: GitContextInput): SchemaPublicationResult - """ - Checks a proposed schema against the schema that has been published to - a particular variant, using metrics corresponding to `historicParameters`. - Callers can set `historicParameters` directly or rely on defaults set in the - graph's check configuration (7 days by default). - If they do not set `historicParameters` but set `useMaximumRetention`, - validation will use the maximum retention the graph has access to. - """ - checkSchema( - """ - Only one of proposedSchema, proposedSchemaDocument, and proposedSchemaHash - may be specified - """ - proposedSchema: IntrospectionSchemaInput - proposedSchemaDocument: String - proposedSchemaHash: String - baseSchemaTag: String = "current" - gitContext: GitContextInput - historicParameters: HistoricQueryParameters - useMaximumRetention: Boolean - isSandboxCheck: Boolean! = false - """If this check is triggered for an sdl fetched using introspection, this is the endpoint where that schema was being served.""" - introspectionEndpoint: String - """Deprecated and ignored.""" - frontend: String - ): CheckSchemaResult! - """Publish to a subgraph. If composition is successful, this will update running routers.""" - publishSubgraph(graphVariant: String!, name: String!, url: String, revision: String!, activePartialSchema: PartialSchemaInput!, gitContext: GitContextInput): SubgraphPublicationResult - """Removes a subgraph. If composition is successful, this will update running routers.""" - removeImplementingServiceAndTriggerComposition( - graphVariant: String! - name: String! - """Do not remove the service, but recompose without it and report any errors.""" - dryRun: Boolean! = false - ): SubgraphRemovalResult! - """ - Checks a proposed subgraph schema change against a published subgraph. - If the proposal composes successfully, perform a usage check for the resulting supergraph schema. - """ - checkPartialSchema( - """The name of the graph variant to run the check against.""" - graphVariant: String! - """Name of the implementing service to validate the partial schema against""" - implementingServiceName: String! - """The partial schema to validate against an implementing service""" - partialSchema: PartialSchemaInput! - gitContext: GitContextInput - historicParameters: HistoricQueryParameters - """Deprecated and ignored.""" - frontend: String - """ - Whether to use the maximum retention for historical validation. This only takes - effect if historicParameters is null. - """ - useMaximumRetention: Boolean - isSandboxCheck: Boolean! = false - """If this check is triggered for an sdl fetched using introspection, this is the endpoint where that schema was being served.""" - introspectionEndpoint: String - ): CheckPartialSchemaResult! -} - -"""Individual permissions for the current user when interacting with a particular Studio graph.""" -type GraphRoles { - """Whether the currently authenticated user is permitted to perform schema checks (i.e., run `rover (sub)graph check`).""" - canCheckSchemas: Boolean! - """Whether the currently authenticated user is permitted to create new graph variants.""" - canCreateVariants: Boolean! - """Whether the currently authenticated user is permitted to delete the graph in question""" - canDelete: Boolean! - """Whether the currently authenticated user is permitted to manage user access to the graph in question.""" - canManageAccess: Boolean! - """Whether the currently authenticated user is permitted to manage the build configuration (e.g., build pipeline version).""" - canManageBuildConfig: Boolean! - """Whether the currently authenticated user is permitted to manage third-party integrations (e.g., Datadog forwarding).""" - canManageIntegrations: Boolean! - """Whether the currently authenticated user is permitted to manage graph-level API keys.""" - canManageKeys: Boolean! - """Whether the currently authenticated user is permitted to perform basic administration of variants (e.g., make a variant public).""" - canManageVariants: Boolean! - """Whether the currently authenticated user is permitted to view details about the build configuration (e.g. build pipeline version).""" - canQueryBuildConfig: Boolean! - """Whether the currently authenticated user is permitted to view details of the check configuration for this graph.""" - canQueryCheckConfiguration: Boolean! - """Whether the currently authenticated user is permitted to view which subgraphs the graph is composed of.""" - canQueryImplementingServices: Boolean! - """Whether the currently authenticated user is permitted to download schemas owned by this graph.""" - canQuerySchemas: Boolean! - """Whether the currently authenticated user is permitted to register operations (i.e. `apollo client:push`) for this graph.""" - canRegisterOperations: Boolean! - """Whether the currently authenticated user is permitted to make updates to the check configuration for this graph.""" - canWriteCheckConfiguration: Boolean! -} - -"""A SHA-256 hash, represented as a lowercase hexadecimal string.""" -scalar SHA256 - -"""A location in a source code file.""" -type SourceLocation { - """Column number.""" - column: Int! - """Line number.""" - line: Int! -} - -enum Status { - STABLE - NEXT - DEPRECATED -} - -"""A subgraph in a federated Studio supergraph.""" -type Subgraph { - """The subgraph schema document's SHA256 hash, represented as a hexadecimal string.""" - hash: String! - """The subgraph's registered name.""" - name: String! - """The number of fields in this subgraph""" - numberOfFields: Int - """The number of types in this subgraph""" - numberOfTypes: Int - """The subgraph's routing URL, provided to gateways that use managed federation.""" - routingURL: String! - """Timestamp of when the subgraph was published.""" - updatedAt: Timestamp -} - -"""A change made to a subgraph as part of a launch.""" -type SubgraphChange { - """The subgraph's name.""" - name: ID! - """The type of change that was made.""" - type: SubgraphChangeType! -} - -enum SubgraphChangeType { - ADDITION - DELETION - MODIFICATION -} - -"""Input type to provide when running schema checks asynchronously for a federated supergraph.""" -input SubgraphCheckAsyncInput { - """Configuration options for the check execution.""" - config: HistoricQueryParametersInput! - """The GitHub context to associate with the check.""" - gitContext: GitContextInput! - """The graph ref of the Studio graph and variant to run checks against (such as `my-graph@current`).""" - graphRef: ID - """The URL of the GraphQL endpoint that Apollo Sandbox introspected to obtain the proposed schema. Required if `isSandbox` is `true`.""" - introspectionEndpoint: String - """If `true`, the check was initiated by Apollo Sandbox.""" - isSandbox: Boolean! - """The proposed subgraph schema to perform checks with.""" - proposedSchema: GraphQLDocument! - """The name of the subgraph to check schema changes for.""" - subgraphName: String! -} - -"""ISO 8601, extended format with nanoseconds, Zulu (or "[+-]seconds" as a string or number relative to now)""" -scalar Timestamp - -"""Counts of changes.""" -type TotalChangeSummaryCounts { - """ - Number of changes that are additions. This includes adding types, adding fields to object, input - object, and interface types, adding values to enums, adding members to interfaces and unions, and - adding arguments. - """ - additions: Int! - """ - Number of changes that are removals. This includes removing types, removing fields from object, - input object, and interface types, removing values from enums, removing members from interfaces - and unions, and removing arguments. This also includes removing @deprecated usages. - """ - removals: Int! - """ - Number of changes that are edits. This includes types changing kind, fields and arguments - changing type, arguments changing default value, and any description changes. This also includes - edits to @deprecated reason strings. - """ - edits: Int! - """Number of changes that are new usages of the @deprecated directive.""" - deprecations: Int! -} - -"""Counts of changes at the type level, including interfaces, unions, enums, scalars, input objects, etc.""" -type TypeChangeSummaryCounts { - """Number of changes that are additions of types.""" - additions: Int! - """Number of changes that are removals of types.""" - removals: Int! - """ - Number of changes that are edits. This includes types changing kind and any type description - changes, but also includes adding/removing values from enums, adding/removing members from - interfaces and unions, and any enum value deprecation and description changes. - """ - edits: Int! -} - -union UpdateOperationCollectionEntryResult = OperationCollectionEntry | PermissionError | ValidationError - -union UpdateOperationCollectionResult = OperationCollection | PermissionError | ValidationError - -"""Describes the result of publishing a schema to a graph variant.""" -type SchemaPublicationResult { - """A machine-readable response code that indicates the type of result (e.g., `UPLOAD_SUCCESS` or `NO_CHANGES`)""" - code: String! - """Whether the schema publish operation succeeded (`true`) or encountered errors (`false`).""" - success: Boolean! - """A Human-readable message describing the type of result.""" - message: String! - """If the publish operation succeeded, this contains its details. Otherwise, this is null.""" - publication: SchemaPublication -} - -"""A registered Apollo Studio user.""" -type User implements Identity { - """Returns a list of all active user API keys for the user.""" - apiKeys(includeCookies: Boolean = false): [UserApiKey!]! - """Returns a representation of this user as an `Actor` type. Useful when determining which actor (usually a `User` or `Graph`) performed a particular action in Studio.""" - asActor: Actor! - """The user's unique ID.""" - id: ID! - """A list of the user's memberships in Apollo Studio organizations.""" - memberships: [UserMembership!]! - """The user's first and last name.""" - name: String! -} - -""" -Represents a user API key, which has permissions identical to -its associated Apollo user. -""" -type UserApiKey implements ApiKey { - """The API key's ID.""" - id: ID! - """The API key's name, for distinguishing it from other keys.""" - keyName: String - """The value of the API key. **This is a secret credential!**""" - token: String! -} - -"""A single user's membership in a single Apollo Studio organization.""" -type UserMembership { - """The organization that the user belongs to.""" - account: Organization! - """The timestamp when the user was added to the organization.""" - createdAt: Timestamp! - """The user's permission level within the organization.""" - permission: UserPermission! - """The user that belongs to the organization.""" - user: User! -} - -type UserMutation { - """Creates a new user API key for this user.""" - newKey(keyName: String!): UserApiKey! - """ - If this user has no active user API keys, this creates one for the user. - - If this user has at least one active user API key, this returns one of those keys at random and does _not_ create a new key. - """ - provisionKey(keyName: String! = "add-a-name"): ApiKeyProvision - """Deletes the user API key with the provided ID, if any.""" - removeKey( - """API key ID""" - id: ID! - ): Void - """Sets a new name for the user API key with the provided ID, if any. This does not invalidate the key or change its value.""" - renameKey(id: ID!, newKeyName: String): UserApiKey -} - -enum UserPermission { - BILLING_MANAGER - CONSUMER - CONTRIBUTOR - DOCUMENTER - GRAPH_ADMIN - LEGACY_GRAPH_KEY - OBSERVER - ORG_ADMIN -} - -"""An error that occurs when an operation contains invalid user input.""" -type ValidationError implements Error { - """The error's details.""" - message: String! -} - -"""Always null""" -scalar Void diff --git a/pkgs/development/tools/rover/update.sh b/pkgs/development/tools/rover/update.sh index fbf6fba989c47..3914c9acb540f 100755 --- a/pkgs/development/tools/rover/update.sh +++ b/pkgs/development/tools/rover/update.sh @@ -49,27 +49,3 @@ cargoSha256=$( sed --in-place \ "s|cargoSha256 = \".*\"|cargoSha256 = \"$cargoSha256\"|" \ "$dirname/default.nix" - -# Update apollo api schema info -response="$(mktemp)" -schemaUrl=https://graphql.api.apollographql.com/api/schema - -mkdir -p "$dirname"/schema - -# Fetch schema info -echo "Fetching Apollo GraphQL schema" -# include response headers, and append terminating newline to response body -curl --include --write-out "\n" "$schemaUrl" > "$response" - -# Parse response headers and write the etag to schema/etag.id -grep \ - --max-count=1 \ - --only-matching \ - --perl-regexp \ - '^etag: \K\S*' \ - "$response" \ - > "$dirname"/schema/etag.id - -# Discard headers and blank line (terminated by carriage return), and write the -# response body to schema/schema.graphql -sed '1,/^\r/d' "$response" > "$dirname"/schema/schema.graphql diff --git a/pkgs/development/tools/rufo/Gemfile.lock b/pkgs/development/tools/rufo/Gemfile.lock index da772486670d2..57951b5236e84 100644 --- a/pkgs/development/tools/rufo/Gemfile.lock +++ b/pkgs/development/tools/rufo/Gemfile.lock @@ -1,7 +1,7 @@ GEM remote: https://rubygems.org/ specs: - rufo (0.16.2) + rufo (0.17.0) PLATFORMS ruby @@ -10,4 +10,4 @@ DEPENDENCIES rufo BUNDLED WITH - 2.4.20 + 2.5.3 diff --git a/pkgs/development/tools/rufo/gemset.nix b/pkgs/development/tools/rufo/gemset.nix index c1d65faba63da..36b2d87637a9d 100644 --- a/pkgs/development/tools/rufo/gemset.nix +++ b/pkgs/development/tools/rufo/gemset.nix @@ -4,9 +4,9 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "11nm1vzr3vd85yy4rd7ndrrx1ygm3m2jmw9r0b9lfxlj8rc1rip2"; + sha256 = "1rqq6mf7fvwvc9m3d5w5ysch3h7z4ml1vvdvy26064fb6lrnn5ai"; type = "gem"; }; - version = "0.16.2"; + version = "0.17.0"; }; } diff --git a/pkgs/development/tools/rust/cargo-binstall/default.nix b/pkgs/development/tools/rust/cargo-binstall/default.nix index 1e404f10eedb6..da6cbe70f51fa 100644 --- a/pkgs/development/tools/rust/cargo-binstall/default.nix +++ b/pkgs/development/tools/rust/cargo-binstall/default.nix @@ -11,16 +11,16 @@ rustPlatform.buildRustPackage rec { pname = "cargo-binstall"; - version = "1.5.0"; + version = "1.6.2"; src = fetchFromGitHub { owner = "cargo-bins"; repo = "cargo-binstall"; rev = "v${version}"; - hash = "sha256-QPUZnqELncUCfm995NN0hYDGFZcKrYXskZIaN2ZRtzk="; + hash = "sha256-pUxCiVOFrn6ytzxYvaaWe6uBrSwXOSoKh3DyGNUl3rM="; }; - cargoHash = "sha256-85r0jDBuvfrJq776MSbQT6w60/xWQkC9zLmZwjdanCk="; + cargoHash = "sha256-uoDH440vmupcz1jYyz8i3dVuPt+/W0H9mBZgriAPC0w="; nativeBuildInputs = [ pkg-config diff --git a/pkgs/development/tools/rust/cargo-bisect-rustc/default.nix b/pkgs/development/tools/rust/cargo-bisect-rustc/default.nix index 963c2d4b2a6ea..da57b85e083e8 100644 --- a/pkgs/development/tools/rust/cargo-bisect-rustc/default.nix +++ b/pkgs/development/tools/rust/cargo-bisect-rustc/default.nix @@ -12,13 +12,13 @@ rustPlatform.buildRustPackage rec { pname = "cargo-bisect-rustc"; - version = "0.6.7"; + version = "0.6.8"; src = fetchFromGitHub { owner = "rust-lang"; repo = pname; rev = "v${version}"; - hash = "sha256-1edBGjnVsMNoP06HAEERQJ6HCkk0dRKlnt1b8GnJWsY="; + hash = "sha256-7HiM1oRuLSfRaum66duag/w8ncFdxRLF0yeSGlIey0Y="; }; patches = @@ -47,7 +47,7 @@ rustPlatform.buildRustPackage rec { Security ]; - cargoHash = "sha256-HzqGSuobGuIuLwoAPQJ1d6xUO2VJ0rcjfOYz2wdIbCk="; + cargoHash = "sha256-CgEs0cejquFRY3VN6CgbE23Gipg+LEuWp/jSIkITrjw="; checkFlags = [ "--skip test_github" # requires internet diff --git a/pkgs/development/tools/rust/cargo-component/default.nix b/pkgs/development/tools/rust/cargo-component/default.nix index e55599ff99783..3543f5d10fb45 100644 --- a/pkgs/development/tools/rust/cargo-component/default.nix +++ b/pkgs/development/tools/rust/cargo-component/default.nix @@ -9,16 +9,16 @@ rustPlatform.buildRustPackage rec { pname = "cargo-component"; - version = "0.6.0"; + version = "0.7.0"; src = fetchFromGitHub { owner = "bytecodealliance"; repo = "cargo-component"; rev = "v${version}"; - hash = "sha256-x5srXt9xTBkBNfG9r7GsDKVSbxJCKU3Y6HoBLvAHyi0="; + hash = "sha256-xOHu7sm06Phe2hc2oev1Am2VlhiSBaeH52aSiFBxuqw="; }; - cargoHash = "sha256-/ZzcsC89U+SfyZaANX1rbytVlQ88p4g+HKRd6JerpQc="; + cargoHash = "sha256-5xencr+HxUBvCwn8rZr1tONUs6S24swE2hlT8jx8t/k="; nativeBuildInputs = [ pkg-config diff --git a/pkgs/development/tools/rust/cargo-crev/default.nix b/pkgs/development/tools/rust/cargo-crev/default.nix index 30a2fd44eab5e..26606ecd5ee7a 100644 --- a/pkgs/development/tools/rust/cargo-crev/default.nix +++ b/pkgs/development/tools/rust/cargo-crev/default.nix @@ -14,16 +14,16 @@ rustPlatform.buildRustPackage rec { pname = "cargo-crev"; - version = "0.25.4"; + version = "0.25.6"; src = fetchFromGitHub { owner = "crev-dev"; repo = "cargo-crev"; rev = "v${version}"; - sha256 = "sha256-cXGZhTLIxR9VHrQT+unbl69AviiQ6FCOJTdOP/4fRYI="; + sha256 = "sha256-kMbbUXiU549JwblLzcP4X5rs6Qu8vaLKB5rnZSpKHKQ="; }; - cargoHash = "sha256-H/5OZCnshGOUKVaBTbFAiMpYdsNC/96gV+rOgiuwDYc="; + cargoHash = "sha256-gUHy8yXTiQd3/7IyVmiq0QqXKF4ZVhF+riryEj/w2NI="; preCheck = '' export HOME=$(mktemp -d) diff --git a/pkgs/development/tools/rust/cargo-deb/default.nix b/pkgs/development/tools/rust/cargo-deb/default.nix index 257819f4ad3b7..99838b98e924c 100644 --- a/pkgs/development/tools/rust/cargo-deb/default.nix +++ b/pkgs/development/tools/rust/cargo-deb/default.nix @@ -7,16 +7,16 @@ rustPlatform.buildRustPackage rec { pname = "cargo-deb"; - version = "2.0.0"; + version = "2.0.5"; src = fetchFromGitHub { owner = "kornelski"; repo = pname; rev = "v${version}"; - hash = "sha256-DgKGnIA2ovBLja+r+nYZ97UPaWO7a7RXeXa10guZBTc="; + hash = "sha256-s/VM3MF3X+2x/0CktzbOPdo8zQMUS5z92hRGfn5P6/w="; }; - cargoHash = "sha256-Sv9i8f0ywMNvjA2yvCX+2ZhFuNCovEGiaMxkg/IV36g="; + cargoHash = "sha256-4FGnX+Uj3SYs0OBJZQrNF4fvKm8XIMdiSBOPYxF45yU="; nativeBuildInputs = [ makeWrapper diff --git a/pkgs/development/tools/rust/cargo-deny/default.nix b/pkgs/development/tools/rust/cargo-deny/default.nix index 915ae7a148c2b..1610acb1c01f9 100644 --- a/pkgs/development/tools/rust/cargo-deny/default.nix +++ b/pkgs/development/tools/rust/cargo-deny/default.nix @@ -9,16 +9,16 @@ rustPlatform.buildRustPackage rec { pname = "cargo-deny"; - version = "0.14.3"; + version = "0.14.10"; src = fetchFromGitHub { owner = "EmbarkStudios"; repo = "cargo-deny"; rev = version; - hash = "sha256-syBf90xPcwp86xJDHtLMZXCsqh4P0mcaAcNnvjYudn8="; + hash = "sha256-9DqVd0EyfHB32hufz13TXdQZsLaiQWIVgTMQfWT5v1Q="; }; - cargoHash = "sha256-YmHHuFubac0j0ptFGOr7GI1PYR4KhShrEwdqikG4RlQ="; + cargoHash = "sha256-KCJ2csFHIWuqHWCWRvTe++vKxHUkzv9tzrtEW6MUj5s="; nativeBuildInputs = [ pkg-config @@ -28,6 +28,7 @@ rustPlatform.buildRustPackage rec { zstd ] ++ lib.optionals stdenv.isDarwin [ darwin.apple_sdk.frameworks.Security + darwin.apple_sdk.frameworks.SystemConfiguration ]; env = { diff --git a/pkgs/development/tools/rust/cargo-dist/default.nix b/pkgs/development/tools/rust/cargo-dist/default.nix index b365ae528b591..5063a4baf40f7 100644 --- a/pkgs/development/tools/rust/cargo-dist/default.nix +++ b/pkgs/development/tools/rust/cargo-dist/default.nix @@ -1,6 +1,7 @@ { lib , rustPlatform , fetchFromGitHub +, nix-update-script , pkg-config , bzip2 , xz @@ -13,16 +14,16 @@ rustPlatform.buildRustPackage rec { pname = "cargo-dist"; - version = "0.5.0"; + version = "0.8.2"; src = fetchFromGitHub { owner = "axodotdev"; repo = "cargo-dist"; rev = "v${version}"; - hash = "sha256-Km/vaEOna+RvckNawIQTSp+FW49P5jx9euKeMaLuOsw="; + hash = "sha256-Y4jXAZgJj0d1fUFuM94umlj/JsawWs3KxEQAucsT24s="; }; - cargoHash = "sha256-ccVflBHwEAuG0Y9Mmit1X6FLsM4bbt8Kd7fB6zBwKMc="; + cargoHash = "sha256-Jza9U5vL45rvDPLb4/iELneKgy1OTCMBM1JxfuxZigQ="; nativeBuildInputs = [ pkg-config @@ -50,11 +51,13 @@ rustPlatform.buildRustPackage rec { rm cargo-dist/tests/integration-tests.rs ''; + passthru.updateScript = nix-update-script { }; + meta = with lib; { description = "A tool for building final distributable artifacts and uploading them to an archive"; homepage = "https://github.com/axodotdev/cargo-dist"; changelog = "https://github.com/axodotdev/cargo-dist/blob/${src.rev}/CHANGELOG.md"; license = with licenses; [ asl20 mit ]; - maintainers = with maintainers; [ figsoda matthiasbeyer ]; + maintainers = with maintainers; [ figsoda matthiasbeyer mistydemeo ]; }; } diff --git a/pkgs/development/tools/rust/cargo-fuzz/default.nix b/pkgs/development/tools/rust/cargo-fuzz/default.nix index 8dc49289f6ab0..12fae7b15c38f 100644 --- a/pkgs/development/tools/rust/cargo-fuzz/default.nix +++ b/pkgs/development/tools/rust/cargo-fuzz/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "cargo-fuzz"; - version = "0.11.3"; + version = "0.11.4"; src = fetchFromGitHub { owner = "rust-fuzz"; repo = "cargo-fuzz"; rev = version; - sha256 = "sha256-itChRuBl5n6lo/d7F5pVth5EbtWPleBcE8ReErmfv9M="; + hash = "sha256-+k1kHiHRQER/8JTOeQdxcbsfMvS6eC74Wkd9IlLldok="; }; - cargoHash = "sha256-AWtycqlmCPISfgX47DXOE6l3jPM1gng9ALTiF87NozI="; + cargoHash = "sha256-N3niTnSSIfOVOGhcHHgTbLnpYNmM4bow7qX539P+kHQ="; buildInputs = lib.optional stdenv.isDarwin libiconv; diff --git a/pkgs/development/tools/rust/cargo-hack/default.nix b/pkgs/development/tools/rust/cargo-hack/default.nix index 9d3e0e279c3a4..0d684a0c0ed25 100644 --- a/pkgs/development/tools/rust/cargo-hack/default.nix +++ b/pkgs/development/tools/rust/cargo-hack/default.nix @@ -2,14 +2,14 @@ rustPlatform.buildRustPackage rec { pname = "cargo-hack"; - version = "0.6.15"; + version = "0.6.17"; src = fetchCrate { inherit pname version; - hash = "sha256-yjaX4lqUj9aZPkRuiJC3yBwXvfvd+Okr87Ia2IQvxfM="; + hash = "sha256-suZkrbxhKFFGfRJDRw6MEc135Xk5Ace3MpKgN7lRnmc="; }; - cargoHash = "sha256-6ogeqVN2V38N7mNBjimjNv/KK2JtV4aa5AorRfYMBx8="; + cargoHash = "sha256-9SQ45f5X3fQeYmemES4t6d4M+2/LEBkgQDYgjuy1J5I="; # some necessary files are absent in the crate version doCheck = false; diff --git a/pkgs/development/tools/rust/cargo-lambda/Cargo.lock b/pkgs/development/tools/rust/cargo-lambda/Cargo.lock index ce1eea3f15c56..163cc12df3afb 100644 --- a/pkgs/development/tools/rust/cargo-lambda/Cargo.lock +++ b/pkgs/development/tools/rust/cargo-lambda/Cargo.lock @@ -4,9 +4,9 @@ version = 3 [[package]] name = "addr2line" -version = "0.17.0" +version = "0.21.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b9ecd88a8c8378ca913a680cd98f0f13ac67383d35993f86c90a70e3f137816b" +checksum = "8a30b2e23b9e17a9f90641c7ab1549cd9b44f296d3ccbf309d2863cfe398a0cb" dependencies = [ "gimli", ] @@ -19,35 +19,29 @@ checksum = "f26201604c87b1e01bd3d98f8d5d9a8fcbb815e8cedb41ffccbeb4bf593a35fe" [[package]] name = "aes" -version = "0.7.5" +version = "0.8.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9e8b47f52ea9bae42228d07ec09eb676433d7c4ed1ebdf0f1d1c29ed446f1ab8" +checksum = "ac1f845298e95f983ff1944b728ae08b8cebab80d684f0a832ed0fc74dfa27e2" dependencies = [ "cfg-if", "cipher", "cpufeatures", - "opaque-debug", ] [[package]] -name = "ahash" -version = "0.7.6" +name = "aho-corasick" +version = "1.1.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "fcb51a0695d8f838b1ee009b3fbf66bda078cd64590202a864a8f3e8c4315c47" +checksum = "b2969dcb958b36655471fc61f7e416fa76033bdd4bfed0678d8fee1e2d07a1f0" dependencies = [ - "getrandom", - "once_cell", - "version_check", + "memchr", ] [[package]] -name = "aho-corasick" -version = "0.7.20" +name = "android-tzdata" +version = "0.1.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "cc936419f96fa211c1b9166887b38e5e40b19958e5b895be7c1f93adec7071ac" -dependencies = [ - "memchr", -] +checksum = "e999941b234f3131b00bc13c22d06e8c5ff726d1b6318ac7eb276997bbb4fef0" [[package]] name = "android_system_properties" @@ -60,9 +54,9 @@ dependencies = [ [[package]] name = "anstream" -version = "0.5.0" +version = "0.6.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b1f58811cfac344940f1a400b6e6231ce35171f614f26439e80f8c1465c5cc0c" +checksum = "2ab91ebe16eb252986481c5b62f6098f3b698a45e34b5b98200cf20dd2484a44" dependencies = [ "anstyle", "anstyle-parse", @@ -74,15 +68,15 @@ dependencies = [ [[package]] name = "anstyle" -version = "1.0.3" +version = "1.0.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b84bf0a05bbb2a83e5eb6fa36bb6e87baa08193c35ff52bbf6b38d8af2890e46" +checksum = "7079075b41f533b8c61d2a4d073c4676e1f8b249ff94a393b0595db304e0dd87" [[package]] name = "anstyle-parse" -version = "0.2.1" +version = "0.2.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "938874ff5980b03a87c5524b3ae5b59cf99b1d6bc836848df7bc5ada9643c333" +checksum = "317b9a89c1868f5ea6ff1d9539a69f45dffc21ce321ac1fd1160dfa48c8e2140" dependencies = [ "utf8parse", ] @@ -98,9 +92,9 @@ dependencies = [ [[package]] name = "anstyle-wincon" -version = "2.1.0" +version = "3.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "58f54d10c6dfa51283a066ceab3ec1ab78d13fae00aa49243a45e4571fb79dfd" +checksum = "f0699d10d2f4d628a98ee7b57b289abbc98ff3bad977cb3152709d4bf2330628" dependencies = [ "anstyle", "windows-sys 0.48.0", @@ -108,9 +102,9 @@ dependencies = [ [[package]] name = "anyhow" -version = "1.0.66" +version = "1.0.75" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "216261ddc8289130e551ddcd5ce8a064710c0d064a4d2895c67151c92b5443f6" +checksum = "a4668cab20f66d8d020e1fbc0ebe47217433c1b6c8f2040faf858554e394ace6" [[package]] name = "anymap2" @@ -138,31 +132,40 @@ dependencies = [ [[package]] name = "async-recursion" -version = "1.0.0" +version = "1.0.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2cda8f4bcc10624c4e85bc66b3f452cca98cfa5ca002dc83a16aad2367641bea" +checksum = "5fd55a5ba1179988837d24ab4c7cc8ed6efdeff578ede0416b4225a5fca35bd0" dependencies = [ "proc-macro2", "quote", - "syn 1.0.103", + "syn 2.0.38", ] [[package]] name = "async-trait" -version = "0.1.58" +version = "0.1.74" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1e805d94e6b5001b651426cf4cd446b1ab5f319d27bab5c644f61de0a804360c" +checksum = "a66537f1bb974b254c98ed142ff995236e81b9d0fe4db0575f46612cb15eb0f9" dependencies = [ "proc-macro2", "quote", - "syn 1.0.103", + "syn 2.0.38", +] + +[[package]] +name = "atomic" +version = "0.6.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "8d818003e740b63afc82337e3160717f4f63078720a810b7b903e70a5d1d2994" +dependencies = [ + "bytemuck", ] [[package]] name = "atomic-take" -version = "1.0.0" +version = "1.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f9f65e4fb35ff6a80b3298d1f028649f3a23da141fa3951e9b24dde1d515b67e" +checksum = "a8ab6b55fe97976e46f91ddbed8d147d966475dc29b2032757ba47e02376fbc3" [[package]] name = "autocfg" @@ -172,280 +175,278 @@ checksum = "d468802bab17cbc0cc575e9b053f41e72aa36bfa6b7f55e3529ffa43161b97fa" [[package]] name = "aws-config" -version = "0.53.0" +version = "0.57.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "741327a7f70e6e639bdb5061964c66250460c70ad3f59c3fe2a3a64ac1484e33" +checksum = "7489a72550db3712fe3a0a92068f832d6270ff82f518b84a800af131f99570d7" dependencies = [ "aws-credential-types", "aws-http", + "aws-runtime", "aws-sdk-sso", + "aws-sdk-ssooidc", "aws-sdk-sts", "aws-smithy-async", - "aws-smithy-client", "aws-smithy-http", - "aws-smithy-http-tower", "aws-smithy-json", + "aws-smithy-runtime", + "aws-smithy-runtime-api", "aws-smithy-types", "aws-types", "bytes", - "hex 0.4.3", + "fastrand", + "hex", "http", "hyper", "ring", - "time 0.3.17", + "time", "tokio", - "tower", "tracing", "zeroize", ] [[package]] name = "aws-credential-types" -version = "0.53.0" +version = "0.57.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5f99dd587a46af58f8cf37773687ecec19d0373a5954942d7e0f405751fe2369" +checksum = "80009846d61a0a4f9070d789cf0e64db284cba6984fae3871050d044e6569cd2" dependencies = [ "aws-smithy-async", + "aws-smithy-runtime-api", "aws-smithy-types", - "tokio", - "tracing", "zeroize", ] [[package]] -name = "aws-endpoint" -version = "0.53.0" +name = "aws-http" +version = "0.57.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "13fdfc00c57d95e10bcf83d2331c4ae9ca460ca84dc983b2cdd692de87640389" +checksum = "1e65730b741a5f6422fd338bf6f76b7956b090affeaa045e78fca8c4186e0fd5" dependencies = [ "aws-smithy-http", + "aws-smithy-runtime-api", "aws-smithy-types", "aws-types", + "bytes", "http", - "regex", + "http-body", + "pin-project-lite", "tracing", ] [[package]] -name = "aws-http" -version = "0.53.0" +name = "aws-runtime" +version = "0.57.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "74cdac70481d144bf7001c27884b95ee12c8f62e61db90320d59b673ae121cb8" +checksum = "1d2414b96071ae840b97c0cc1d44b248d5607d648593cdf474f3fb5465572898" dependencies = [ "aws-credential-types", + "aws-http", + "aws-sigv4", + "aws-smithy-async", + "aws-smithy-eventstream", "aws-smithy-http", + "aws-smithy-runtime-api", "aws-smithy-types", "aws-types", - "bytes", + "fastrand", "http", - "http-body", - "lazy_static", "percent-encoding", - "pin-project-lite", "tracing", + "uuid", ] [[package]] name = "aws-sdk-iam" -version = "0.23.0" +version = "0.35.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ed6d940e3dfda67712700b48e8f3c4758dfceff9f968b4f7dc81de5f6c159ba3" +checksum = "a299158323ebc6029b250e7ffd567810c1bd9777dbd5f7a65969a67e03786722" dependencies = [ "aws-credential-types", - "aws-endpoint", "aws-http", - "aws-sig-auth", + "aws-runtime", "aws-smithy-async", - "aws-smithy-client", "aws-smithy-http", - "aws-smithy-http-tower", "aws-smithy-json", "aws-smithy-query", + "aws-smithy-runtime", + "aws-smithy-runtime-api", "aws-smithy-types", "aws-smithy-xml", "aws-types", - "bytes", "http", "regex", - "tokio-stream", - "tower", "tracing", - "url", ] [[package]] name = "aws-sdk-lambda" -version = "0.23.0" +version = "0.35.0" source = 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+955,7 @@ dependencies = [ [[package]] name = "cargo-lambda-interactive" -version = "0.21.1" +version = "1.0.1" dependencies = [ "indicatif", "inquire", @@ -925,12 +966,12 @@ dependencies = [ [[package]] name = "cargo-lambda-invoke" -version = "0.21.1" +version = "1.0.1" dependencies = [ - "base64 0.21.2", + "base64 0.21.5", "cargo-lambda-remote", "clap", - "dirs", + "dirs 4.0.0", "miette 5.10.0", "reqwest", "serde", @@ -944,10 +985,10 @@ dependencies = [ [[package]] name = "cargo-lambda-metadata" -version = "0.21.1" +version = "1.0.1" dependencies = [ "aws-sdk-lambda", - "cargo_metadata", + "cargo_metadata 0.15.4", "clap", "env-file-reader", "miette 4.7.1", @@ -957,12 +998,14 @@ dependencies = [ "strum", "strum_macros", "thiserror", + "toml 0.8.8", "tracing", + "urlencoding", ] [[package]] name = "cargo-lambda-new" -version = "0.21.1" +version = "1.0.1" dependencies = [ "cargo-lambda-interactive", "cargo-lambda-metadata", @@ -983,7 +1026,7 @@ dependencies = [ [[package]] name = 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"12024c4645c97566567129c204f65d5815a8c9aecf30fcbe682b2fe034996d36" dependencies = [ "serde", ] @@ -1050,13 +1093,15 @@ dependencies = [ [[package]] name = "cargo-test-macro" version = "0.1.0" -source = "git+https://github.com/rust-lang/cargo#c6c69cde0dc92cecc1f92d03b92dc7cd47d8e6a2" +source = "git+https://github.com/rust-lang/cargo#6354bb3d813335731838fd7dce2010d040cc2545" [[package]] name = "cargo-test-support" version = "0.1.0" -source = "git+https://github.com/rust-lang/cargo#c6c69cde0dc92cecc1f92d03b92dc7cd47d8e6a2" +source = "git+https://github.com/rust-lang/cargo#6354bb3d813335731838fd7dce2010d040cc2545" dependencies = [ + "anstream", + "anstyle", "anyhow", "cargo-test-macro", "cargo-util", @@ -1065,64 +1110,81 @@ dependencies = [ "flate2", "git2", "glob", - "itertools", - "lazy_static", + "itertools 0.11.0", + "pasetors", + "serde", "serde_json", "snapbox", "tar", - "termcolor", - "toml_edit 0.15.0", + "time", + "toml 0.8.8", "url", - "winapi", + "windows-sys 0.48.0", ] [[package]] name = "cargo-util" -version = "0.2.3" -source = "git+https://github.com/rust-lang/cargo#c6c69cde0dc92cecc1f92d03b92dc7cd47d8e6a2" +version = "0.2.8" +source = "git+https://github.com/rust-lang/cargo#6354bb3d813335731838fd7dce2010d040cc2545" dependencies = [ "anyhow", "core-foundation", - "crypto-hash", "filetime", - "hex 0.4.3", + "hex", "jobserver", "libc", - "log", "miow", "same-file", + "sha2", "shell-escape", "tempfile", + "tracing", "walkdir", - "winapi", + "windows-sys 0.48.0", ] [[package]] name = "cargo-zigbuild" -version = "0.14.5" +version = "0.17.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f7f66533431659d54043e78b4867fe62cad4e9a5c65c8e659d84e5ae19cec5d6" +checksum = "d5166694ea85c72f887293af72a665d7ac5a537649e607773bf834cb6303b1da" dependencies = [ "anyhow", "cargo-options", - "cargo_metadata", + "cargo_metadata 0.18.1", "clap", - "dirs", + "dirs 5.0.1", + "fat-macho", "fs-err", "path-slash", "rustc_version", "semver", "serde", "serde_json", + "shlex", "target-lexicon", "which", ] [[package]] name = "cargo_metadata" -version = "0.15.3" +version = "0.15.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "08a1ec454bc3eead8719cb56e15dbbfecdbc14e4b3a3ae4936cc6e31f5fc0d07" +checksum = "eee4243f1f26fc7a42710e7439c149e2b10b05472f88090acce52632f231a73a" +dependencies = [ + "camino", + "cargo-platform", + "semver", + "serde", + "serde_json", + "thiserror", +] + +[[package]] +name = "cargo_metadata" +version = "0.18.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "2d886547e41f740c616ae73108f6eb70afe6d940c7bc697cb30f13daec073037" dependencies = [ "camino", "cargo-platform", @@ -1134,11 +1196,12 @@ dependencies = [ [[package]] name = "cc" -version = "1.0.77" +version = "1.0.83" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e9f73505338f7d905b19d18738976aae232eb46b8efc15554ffc56deb5d9ebe4" +checksum = "f1174fb0b6ec23863f8b971027804a42614e347eafb0a95bf0b12cdae21fc4d0" dependencies = [ "jobserver", + "libc", ] [[package]] @@ -1149,34 +1212,34 @@ checksum = "baf1de4339761588bc0619e3cbc0120ee582ebb74b53b4efbf79117bd2da40fd" [[package]] name = "chrono" -version = "0.4.23" +version = "0.4.31" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "16b0a3d9ed01224b22057780a37bb8c5dbfe1be8ba48678e7bf57ec4b385411f" +checksum = "7f2c685bad3eb3d45a01354cedb7d5faa66194d1d58ba6e267a8de788f79db38" dependencies = [ + "android-tzdata", "iana-time-zone", "js-sys", - "num-integer", "num-traits", "serde", - "time 0.1.45", "wasm-bindgen", - "winapi", + "windows-targets 0.48.5", ] [[package]] name = "cipher" -version = "0.3.0" +version = "0.4.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7ee52072ec15386f770805afd189a01c8841be8696bed250fa2f13c4c0d6dfb7" +checksum = "773f3b9af64447d2ce9850330c473515014aa235e6a783b02db81ff39e4a3dad" dependencies = [ - "generic-array", + "crypto-common", + "inout", ] [[package]] name = "clap" -version = "4.4.2" +version = "4.4.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "6a13b88d2c62ff462f88e4a121f17a82c1af05693a2f192b5c38d14de73c19f6" +checksum = "ac495e00dcec98c83465d5ad66c5c4fabd652fd6686e7c6269b117e729a6f17b" dependencies = [ "clap_builder", "clap_derive", @@ -1194,34 +1257,34 @@ dependencies = [ [[package]] name = "clap_builder" -version = "4.4.2" +version = "4.4.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2bb9faaa7c2ef94b2743a21f5a29e6f0010dff4caa69ac8e9d6cf8b6fa74da08" +checksum = "c77ed9a32a62e6ca27175d00d29d05ca32e396ea1eb5fb01d8256b669cec7663" dependencies = [ "anstream", "anstyle", "clap_lex", "strsim", - "terminal_size 0.2.2", + "terminal_size 0.3.0", ] [[package]] name = "clap_derive" -version = "4.4.2" +version = "4.4.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0862016ff20d69b84ef8247369fabf5c008a7417002411897d40ee1f4532b873" +checksum = "cf9804afaaf59a91e75b022a30fb7229a7901f60c755489cc61c9b423b836442" dependencies = [ "heck", "proc-macro2", "quote", - "syn 2.0.28", + "syn 2.0.38", ] [[package]] name = "clap_lex" -version = "0.5.1" +version = "0.6.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "cd7cc57abe963c6d3b9d8be5b06ba7c8957a930305ca90304f24ef040aa6f961" +checksum = "702fc72eb24e5a1e48ce58027a675bc24edd52096d5397d4aea7c6dd9eca0bd1" [[package]] name = "clearscreen" @@ -1237,32 +1300,12 @@ dependencies = [ ] [[package]] -name = "codespan-reporting" -version = "0.11.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3538270d33cc669650c4b093848450d380def10c331d38c768e34cac80576e6e" -dependencies = [ - "termcolor", - "unicode-width", -] - -[[package]] name = "colorchoice" version = "1.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = 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"28c122c3980598d243d63d9a704629a2d748d101f278052ff068be5a4423ab6f" + +[[package]] name = "constant_time_eq" version = "0.1.5" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -1350,37 +1363,37 @@ dependencies = [ [[package]] name = "core-foundation-sys" -version = "0.8.3" +version = "0.8.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5827cebf4670468b8772dd191856768aedcb1b0278a04f989f7766351917b9dc" +checksum = "e496a50fda8aacccc86d7529e2c1e0892dbd0f898a6b5645b5561b89c3210efa" [[package]] name = "cpufeatures" -version = "0.2.5" +version = "0.2.11" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "28d997bd5e24a5928dd43e46dc529867e207907fe0b239c3477d924f7f2ca320" +checksum = "ce420fe07aecd3e67c5f910618fe65e94158f6dcc0adf44e00d69ce2bdfe0fd0" dependencies = [ "libc", ] [[package]] name = "crates-io" -version = "0.35.0" -source = "git+https://github.com/rust-lang/cargo#c6c69cde0dc92cecc1f92d03b92dc7cd47d8e6a2" +version = "0.39.1" +source = "git+https://github.com/rust-lang/cargo#6354bb3d813335731838fd7dce2010d040cc2545" dependencies = [ - "anyhow", "curl", "percent-encoding", "serde", "serde_json", + "thiserror", "url", ] [[package]] name = "crc32c" -version = "0.6.3" +version = "0.6.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3dfea2db42e9927a3845fb268a10a72faed6d416065f77873f05e411457c363e" +checksum = "d8f48d60e5b4d2c53d5c2b1d8a58c849a70ae5e5509b08a48d047e3b65714a74" dependencies = [ "rustc_version", ] @@ -1396,9 +1409,9 @@ dependencies = [ [[package]] name = "crossbeam-channel" -version = "0.5.6" +version = "0.5.8" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c2dd04ddaf88237dc3b8d8f9a3c1004b506b54b3313403944054d23c0870c521" +checksum = "a33c2bf77f2df06183c3aa30d1e96c0695a313d4f9c453cc3762a6db39f99200" dependencies = [ "cfg-if", "crossbeam-utils", @@ -1406,9 +1419,9 @@ dependencies = [ [[package]] name = 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"futures-util", "http", "hyper", "log", @@ -2332,33 +2510,32 @@ dependencies = [ [[package]] name = "iana-time-zone" -version = "0.1.53" +version = "0.1.58" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "64c122667b287044802d6ce17ee2ddf13207ed924c712de9a66a5814d5b64765" +checksum = "8326b86b6cff230b97d0d312a6c40a60726df3332e721f72a1b035f451663b20" dependencies = [ "android_system_properties", "core-foundation-sys", "iana-time-zone-haiku", "js-sys", "wasm-bindgen", - "winapi", + "windows-core", ] [[package]] name = "iana-time-zone-haiku" -version = "0.1.1" +version = "0.1.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0703ae284fc167426161c2e3f1da3ea71d94b21bedbcc9494e92b28e334e3dca" +checksum = "f31827a206f56af32e590ba56d5d2d085f558508192593743f16b2306495269f" dependencies = [ - "cxx", - "cxx-build", + "cc", ] [[package]] name = "idna" -version = "0.3.0" +version = "0.4.0" source = 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[[package]] name = "js-sys" -version = "0.3.60" +version = "0.3.65" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "49409df3e3bf0856b916e2ceaca09ee28e6871cf7d9ce97a692cacfdb2a25a47" +checksum = "54c0c35952f67de54bb584e9fd912b3023117cbafc0a77d8f3dee1fb5f572fe8" dependencies = [ "wasm-bindgen", ] [[package]] name = "kqueue" -version = "1.0.7" +version = "1.0.8" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2c8fc60ba15bf51257aa9807a48a61013db043fcf3a78cb0d916e8e396dcad98" +checksum = "7447f1ca1b7b563588a205fe93dea8df60fd981423a768bc1c0ded35ed147d0c" dependencies = [ "kqueue-sys", "libc", @@ -2560,11 +2738,11 @@ dependencies = [ [[package]] name = "kqueue-sys" -version = "1.0.3" +version = "1.0.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8367585489f01bc55dd27404dcf56b95e6da061a256a666ab23be9ba96a2e587" +checksum = "ed9625ffda8729b85e45cf04090035ac368927b8cebc34898e7c120f52e4838b" dependencies 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[[package]] @@ -3475,9 +3689,9 @@ dependencies = [ [[package]] name = "quote" -version = "1.0.32" +version = "1.0.33" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "50f3b39ccfb720540debaa0164757101c08ecb8d326b15358ce76a62c7e85965" +checksum = "5267fca4496028628a95160fc423a33e8b2e6af8a5302579e322e4b520293cae" dependencies = [ "proc-macro2", ] @@ -3514,25 +3728,22 @@ dependencies = [ [[package]] name = "rayon" -version = "1.6.0" +version = "1.8.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1e060280438193c554f654141c9ea9417886713b7acd75974c85b18a69a88e0b" +checksum = "9c27db03db7734835b3f53954b534c91069375ce6ccaa2e065441e07d9b6cdb1" dependencies = [ - "crossbeam-deque", "either", "rayon-core", ] [[package]] name = "rayon-core" -version = "1.10.1" +version = "1.12.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "cac410af5d00ab6884528b4ab69d1e8e146e8d471201800fa1b4524126de6ad3" +checksum = 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+version = "0.48.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "180e6ccf01daf4c426b846dfc66db1fc518f074baa793aa7d9b9aaeffad6a3b6" +checksum = "dc35310971f3b2dbbf3f0690a219f40e2d9afcf64f9ab7cc1be722937c26b4bc" [[package]] name = "windows_i686_gnu" @@ -5149,15 +5455,9 @@ checksum = "c61d927d8da41da96a81f029489353e68739737d3beca43145c8afec9a31a84f" [[package]] name = "windows_i686_gnu" -version = "0.48.0" +version = "0.48.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "622a1962a7db830d6fd0a69683c80a18fda201879f0f447f065a3b7467daa241" - -[[package]] -name = "windows_i686_msvc" -version = "0.36.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e2e7917148b2812d1eeafaeb22a97e4813dfa60a3f8f78ebe204bcc88f12f024" +checksum = "a75915e7def60c94dcef72200b9a8e58e5091744960da64ec734a6c6e9b3743e" [[package]] name = "windows_i686_msvc" @@ -5167,15 +5467,9 @@ checksum = "44d840b6ec649f480a41c8d80f9c65108b92d89345dd94027bfe06ac444d1060" [[package]] name = "windows_i686_msvc" -version = "0.48.0" +version = "0.48.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4542c6e364ce21bf45d69fdd2a8e455fa38d316158cfd43b3ac1c5b1b19f8e00" - -[[package]] -name = "windows_x86_64_gnu" -version = "0.36.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4dcd171b8776c41b97521e5da127a2d86ad280114807d0b2ab1e462bc764d9e1" +checksum = "8f55c233f70c4b27f66c523580f78f1004e8b5a8b659e05a4eb49d4166cca406" [[package]] name = "windows_x86_64_gnu" @@ -5185,9 +5479,9 @@ checksum = "8de912b8b8feb55c064867cf047dda097f92d51efad5b491dfb98f6bbb70cb36" [[package]] name = "windows_x86_64_gnu" -version = "0.48.0" +version = "0.48.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ca2b8a661f7628cbd23440e50b05d705db3686f894fc9580820623656af974b1" +checksum = "53d40abd2583d23e4718fddf1ebec84dbff8381c07cae67ff7768bbf19c6718e" [[package]] name = "windows_x86_64_gnullvm" @@ -5197,15 +5491,9 @@ checksum = "26d41b46a36d453748aedef1486d5c7a85db22e56aff34643984ea85514e94a3" [[package]] name = "windows_x86_64_gnullvm" -version = "0.48.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7896dbc1f41e08872e9d5e8f8baa8fdd2677f29468c4e156210174edc7f7b953" - -[[package]] -name = "windows_x86_64_msvc" -version = "0.36.1" +version = "0.48.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c811ca4a8c853ef420abd8592ba53ddbbac90410fab6903b3e79972a631f7680" +checksum = "0b7b52767868a23d5bab768e390dc5f5c55825b6d30b86c844ff2dc7414044cc" [[package]] name = "windows_x86_64_msvc" @@ -5215,51 +5503,46 @@ checksum = "9aec5da331524158c6d1a4ac0ab1541149c0b9505fde06423b02f5ef0106b9f0" [[package]] name = "windows_x86_64_msvc" -version = "0.48.0" +version = "0.48.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1a515f5799fe4961cb532f983ce2b23082366b898e52ffbce459c86f67c8378a" +checksum = "ed94fce61571a4006852b7389a063ab983c02eb1bb37b47f8272ce92d06d9538" [[package]] name = "winnow" -version = "0.4.7" +version = "0.5.18" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ca0ace3845f0d96209f0375e6d367e3eb87eb65d27d445bdc9f1843a26f39448" +checksum = "176b6138793677221d420fd2f0aeeced263f197688b36484660da767bca2fa32" dependencies = [ "memchr", ] [[package]] name = "winreg" -version = "0.10.1" +version = "0.50.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "80d0f4e272c85def139476380b12f9ac60926689dd2e01d4923222f40580869d" +checksum = "524e57b2c537c0f9b1e69f1965311ec12182b4122e45035b1508cd24d2adadb1" dependencies = [ - "winapi", + "cfg-if", + "windows-sys 0.48.0", ] [[package]] name = "xmlparser" -version = "0.13.5" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4d25c75bf9ea12c4040a97f829154768bbbce366287e2dc044af160cd79a13fd" - -[[package]] -name = "yansi" -version = "0.5.1" +version = "0.13.6" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "09041cd90cf85f7f8b2df60c646f853b7f535ce68f85244eb6731cf89fa498ec" +checksum = "66fee0b777b0f5ac1c69bb06d361268faafa61cd4682ae064a171c16c433e9e4" [[package]] name = "zeroize" -version = "1.5.7" +version = "1.6.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c394b5bd0c6f669e7275d9c20aa90ae064cb22e75a1cad54e1b34088034b149f" +checksum = "2a0956f1ba7c7909bfb66c2e9e4124ab6f6482560f6628b5aaeba39207c9aad9" [[package]] name = "zip" -version = "0.6.3" +version = "0.6.6" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "537ce7411d25e54e8ae21a7ce0b15840e7bfcff15b51d697ec3266cc76bdf080" +checksum = "760394e246e4c28189f19d488c058bf16f564016aefac5d32bb1f3b51d5e9261" dependencies = [ "aes", "byteorder", @@ -5271,7 +5554,7 @@ dependencies = [ "hmac", "pbkdf2", "sha1", - "time 0.3.17", + "time", "zstd", ] @@ -5296,10 +5579,10 @@ dependencies = [ [[package]] name = "zstd-sys" -version = "2.0.3+zstd.1.5.2" +version = "2.0.9+zstd.1.5.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "44ccf97612ac95f3ccb89b2d7346b345e52f1c3019be4984f0455fb4ba991f8a" +checksum = "9e16efa8a874a0481a574084d34cc26fdb3b99627480f785888deb6386506656" dependencies = [ "cc", - "libc", + "pkg-config", ] diff --git a/pkgs/development/tools/rust/cargo-lambda/default.nix b/pkgs/development/tools/rust/cargo-lambda/default.nix index 9efbc79ca0d17..c93679d63d05e 100644 --- a/pkgs/development/tools/rust/cargo-lambda/default.nix +++ b/pkgs/development/tools/rust/cargo-lambda/default.nix @@ -10,23 +10,24 @@ , CoreServices , Security , zig +, nix-update-script }: rustPlatform.buildRustPackage rec { pname = "cargo-lambda"; - version = "0.21.1"; + version = "1.0.1"; src = fetchFromGitHub { owner = pname; repo = pname; rev = "v${version}"; - hash = "sha256-QlTAYfd0taXfK370nzqictwK7bZ4bnh1oPBJKZzhnMo="; + hash = "sha256-KSJn8DRvm/ZLikCT8Tp9lb/ej0KSlZqRROs1yLNDa6c="; }; cargoLock = { lockFile = ./Cargo.lock; outputHashes = { - "cargo-test-macro-0.1.0" = "sha256-XvTKAbP/r1BthpEM84CYZ2yfJczxqzscGkN4JXLgvfA="; + "cargo-test-macro-0.1.0" = "sha256-s3PM5SHGwZRr1cKt3LTL9fSAhzZ6CaZmDMVUgnOr6R0="; }; }; @@ -64,6 +65,8 @@ rustPlatform.buildRustPackage rec { CARGO_LAMBDA_BUILD_INFO = "(nixpkgs)"; + passthru.updateScript = nix-update-script { }; + meta = with lib; { description = "A Cargo subcommand to help you work with AWS Lambda"; homepage = "https://cargo-lambda.info"; diff --git a/pkgs/development/tools/rust/cargo-license/default.nix b/pkgs/development/tools/rust/cargo-license/default.nix index 085286a7eb0bd..27798f4ca85e6 100644 --- a/pkgs/development/tools/rust/cargo-license/default.nix +++ b/pkgs/development/tools/rust/cargo-license/default.nix @@ -2,14 +2,14 @@ rustPlatform.buildRustPackage rec { pname = "cargo-license"; - version = "0.5.1"; + version = "0.6.1"; src = fetchCrate { inherit pname version; - sha256 = "sha256-M/QGM8jPLrDIoF1TVYDoVcHni1qaRCyZwHlYgia24Ro="; + sha256 = "sha256-qwyWj0vPWQOZYib2ZZutX25a4wwnG1kFAiRCWqGyVms="; }; - cargoSha256 = "sha256-2m+ornrQQzijyF30uQ6xpEiid6r6I1wTa8nn6Q0wNKo="; + cargoHash = "sha256-ifw/n7eejUWUqhieDLojuO3xgosn28NnjAKkq/ZSLEI="; meta = with lib; { description = "Cargo subcommand to see license of dependencies"; diff --git a/pkgs/development/tools/rust/cargo-llvm-cov/default.nix b/pkgs/development/tools/rust/cargo-llvm-cov/default.nix index 6809aef437996..be81bb5ea7882 100644 --- a/pkgs/development/tools/rust/cargo-llvm-cov/default.nix +++ b/pkgs/development/tools/rust/cargo-llvm-cov/default.nix @@ -26,7 +26,7 @@ let pname = "cargo-llvm-cov"; - version = "0.6.0"; + version = "0.6.2"; owner = "taiki-e"; homepage = "https://github.com/${owner}/${pname}"; @@ -37,7 +37,7 @@ let cargoLock = fetchurl { name = "Cargo.lock"; url = "https://crates.io/api/v1/crates/${pname}/${version}/download"; - sha256 = "sha256-n/LMICQ+38Y9PrzFh9uJ0ljmUrAxfue2l1HculuZ1x8="; + sha256 = "sha256-iML16yjSJsyDsr9F3gyp4XTu5Z9petSUQ0jXotU5tmw="; downloadToTemp = true; postFetch = '' tar xzf $downloadedFile ${pname}-${version}/Cargo.lock @@ -55,7 +55,7 @@ rustPlatform.buildRustPackage { inherit owner; repo = pname; rev = "v${version}"; - sha256 = "sha256-Q1Us7VhvWaCQP9Aik9Fd0rXLP/tuSHmc98+3HoY2YNY="; + sha256 = "sha256-1VfWs8f4i3YjH69A7X3/1WPxSIwPRF5osQ/1eqOUB8U="; leaveDotGit = true; }; @@ -64,7 +64,7 @@ rustPlatform.buildRustPackage { cp ${cargoLock} source/Cargo.lock ''; - cargoSha256 = "sha256-42s/90clkRXkNIZZxZQRwhNxMdCvgiknkCs/hWsofw0="; + cargoSha256 = "sha256-9pOfhGnktEgyTbfK4roFU7t3qcgx2yRp17hJVKsvNqw="; # `cargo-llvm-cov` reads these environment variables to find these binaries, # which are needed to run the tests diff --git a/pkgs/development/tools/rust/cargo-make/default.nix b/pkgs/development/tools/rust/cargo-make/default.nix index ad01bae6f9d25..1971c81f46093 100644 --- a/pkgs/development/tools/rust/cargo-make/default.nix +++ b/pkgs/development/tools/rust/cargo-make/default.nix @@ -10,16 +10,16 @@ rustPlatform.buildRustPackage rec { pname = "cargo-make"; - version = "0.37.5"; + version = "0.37.9"; src = fetchFromGitHub { owner = "sagiegurari"; repo = "cargo-make"; rev = version; - hash = "sha256-2kJdj1Ye6o/GQSWRIi/SvSEz0Yvdx9xDzsYdJm4I0GQ="; + hash = "sha256-pfLK9QGDS4KPIdXq/LI++/r1OxqmgF0qqVJNDSVrZFI="; }; - cargoHash = "sha256-3Xo1JqqaEIEA18bsrLFOD4HMd/evdSEHL0DdqNNjJL8="; + cargoHash = "sha256-x8cx64B+skusk0LDRQT/1g57NBQMchy2HvvryoY0R/I="; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/development/tools/rust/cargo-mutants/default.nix b/pkgs/development/tools/rust/cargo-mutants/default.nix index 6f4c85488acdf..7418240ac045d 100644 --- a/pkgs/development/tools/rust/cargo-mutants/default.nix +++ b/pkgs/development/tools/rust/cargo-mutants/default.nix @@ -7,16 +7,16 @@ rustPlatform.buildRustPackage rec { pname = "cargo-mutants"; - version = "24.1.0"; + version = "24.2.0"; src = fetchFromGitHub { owner = "sourcefrog"; repo = "cargo-mutants"; rev = "v${version}"; - hash = "sha256-hWM8QtzWUrhWHTAv4Fgq9F3ZIZS2HVP4R8J/HIh8T+0="; + hash = "sha256-cjU/RvfRgeFYwATEVQLmqxxy5qnQtY4R5Hd7jG772Ik="; }; - cargoHash = "sha256-dKhxyhLWeaP9/qYZLMDFGF2DmKhzPXOT5qXHP3D3MjY="; + cargoHash = "sha256-0DFMiR4QelTfbTLxU7ceuUgYowO8eRhPemndEWq5xQQ="; buildInputs = lib.optionals stdenv.isDarwin [ darwin.apple_sdk.frameworks.SystemConfiguration diff --git a/pkgs/development/tools/rust/cargo-semver-checks/default.nix b/pkgs/development/tools/rust/cargo-semver-checks/default.nix index e1b2f6867e1f6..1d940aac1e274 100644 --- a/pkgs/development/tools/rust/cargo-semver-checks/default.nix +++ b/pkgs/development/tools/rust/cargo-semver-checks/default.nix @@ -10,16 +10,16 @@ rustPlatform.buildRustPackage rec { pname = "cargo-semver-checks"; - version = "0.27.0"; + version = "0.28.0"; src = fetchFromGitHub { owner = "obi1kenobi"; repo = pname; rev = "v${version}"; - hash = "sha256-DN50syZ965MWXKg3lhEhvINeqZUtZgJNjusevf4EIUw="; + hash = "sha256-5QXTbsNp36jYrcSDmCXT5Nmhhr9TaWpF3QqaCKv5TTg="; }; - cargoHash = "sha256-ulsU/QSSNqyZTjM77PQnr3HVUg2dS8SxHv2y6Lsvths="; + cargoHash = "sha256-uRgSNVleGzD75q16hd/AOl23DT1btWGuNgZ2IprGa7k="; nativeBuildInputs = [ cmake diff --git a/pkgs/development/tools/rust/cargo-show-asm/default.nix b/pkgs/development/tools/rust/cargo-show-asm/default.nix index b320806839499..139ea6c7f0682 100644 --- a/pkgs/development/tools/rust/cargo-show-asm/default.nix +++ b/pkgs/development/tools/rust/cargo-show-asm/default.nix @@ -9,14 +9,14 @@ rustPlatform.buildRustPackage rec { pname = "cargo-show-asm"; - version = "0.2.25"; + version = "0.2.29"; src = fetchCrate { inherit pname version; - hash = "sha256-jIOJr0saR+k++bPlYsf9LzWCJEDC/DHb6KjRonhAImA="; + hash = "sha256-9Q+BnzgoD95eKkMZrQF6+khbx5wqnER83PK3vbRrRv8="; }; - cargoHash = "sha256-kp6bZQjmI4enJvxOX8L0c3ZlqohZn6uKYnjrrxd/Hjg="; + cargoHash = "sha256-cyFAilqpaO6TDtJUmweUHYEpWxUAhHDYgCUGSz5EBFU="; nativeBuildInputs = [ installShellFiles diff --git a/pkgs/development/tools/rust/cargo-show-asm/test-basic-x86_64.nix b/pkgs/development/tools/rust/cargo-show-asm/test-basic-x86_64.nix index c0dd8b421b0a5..ca1738f02185e 100644 --- a/pkgs/development/tools/rust/cargo-show-asm/test-basic-x86_64.nix +++ b/pkgs/development/tools/rust/cargo-show-asm/test-basic-x86_64.nix @@ -9,7 +9,7 @@ name = "add" version = "0.0.0" EOF cat >src/lib.rs <<EOF -pub fn add(a: u32, b: u32) -> u32 { a + b } +#[inline(never)] pub fn add(a: u32, b: u32) -> u32 { a + b } EOF [[ "$(cargo asm add::add | tee /dev/stderr)" == *"lea eax, "* ]] diff --git a/pkgs/development/tools/rust/cargo-tally/default.nix b/pkgs/development/tools/rust/cargo-tally/default.nix index afbc4ad22ce78..9a1adef89190c 100644 --- a/pkgs/development/tools/rust/cargo-tally/default.nix +++ b/pkgs/development/tools/rust/cargo-tally/default.nix @@ -2,14 +2,14 @@ rustPlatform.buildRustPackage rec { pname = "cargo-tally"; - version = "1.0.34"; + version = "1.0.35"; src = fetchCrate { inherit pname version; - hash = "sha256-8PlWRWP5ZsbZ3R/yqA9bUScG0w+gk5YLcIOqwWishVM="; + hash = "sha256-RtpOKngi8oTCnJFXSHHlBPpNoPcco06yyB2/+S5nG04="; }; - cargoHash = "sha256-+Ti8un+y9aNPsz9rUjmTZ6nxVCeQObiZrCYrD6dwr4c="; + cargoHash = "sha256-CC4F7fsQsjNAVwslxVHG3scjqWvKfjlDve27LEGXSms="; buildInputs = lib.optionals stdenv.isDarwin (with darwin.apple_sdk_11_0.frameworks; [ DiskArbitration diff --git a/pkgs/development/tools/rust/cargo-udeps/default.nix b/pkgs/development/tools/rust/cargo-udeps/default.nix index 6c0b02c189dbb..e82d9b01ce1f9 100644 --- a/pkgs/development/tools/rust/cargo-udeps/default.nix +++ b/pkgs/development/tools/rust/cargo-udeps/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "cargo-udeps"; - version = "0.1.43"; + version = "0.1.45"; src = fetchFromGitHub { owner = "est31"; repo = pname; rev = "v${version}"; - sha256 = "sha256-aZzkVyRWxpSB0lPD7A8kbZc93h43OyPn0Pk9tCIZRnA="; + sha256 = "sha256-pfEvztV/DAPPOxm8An/PsBdoF8S/AK+/S+vllezYCeo="; }; - cargoHash = "sha256-kQ1NQDvOBU8mmQQgNR4l1bBN0nr/ZSudJkL7Gf9hpgU="; + cargoHash = "sha256-SYlFENdnMeKxeDDHw73/edu1807rgrg8ncWTBsmgPtY="; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/development/tools/rust/cargo-watch/default.nix b/pkgs/development/tools/rust/cargo-watch/default.nix index aadecc823bbe3..fe748a7dbeb5e 100644 --- a/pkgs/development/tools/rust/cargo-watch/default.nix +++ b/pkgs/development/tools/rust/cargo-watch/default.nix @@ -8,16 +8,16 @@ rustPlatform.buildRustPackage rec { pname = "cargo-watch"; - version = "8.5.1"; + version = "8.5.2"; src = fetchFromGitHub { owner = "watchexec"; repo = pname; rev = "v${version}"; - hash = "sha256-MzwifQsOSJt9wq8bhVAY6HqXP4Zs4+a2GcG79PdAiMY="; + hash = "sha256-Vf6BFr8MphaUJoHMtksbbVQb+jha7jowhktQCVFxlxQ="; }; - cargoHash = "sha256-wyyIZ7i1icvD53hnUM4H/kvxj6K/pVzAAvKKp5LzwTE="; + cargoHash = "sha256-skUG1B6TCFEXeQSRwA6vWjXmNifk5bTR4+JESw7CZMo="; buildInputs = lib.optionals stdenv.isDarwin [ Foundation Cocoa ]; diff --git a/pkgs/development/tools/rust/cargo-workspaces/default.nix b/pkgs/development/tools/rust/cargo-workspaces/default.nix index 3f97405fb678d..5cb3c4de96b19 100644 --- a/pkgs/development/tools/rust/cargo-workspaces/default.nix +++ b/pkgs/development/tools/rust/cargo-workspaces/default.nix @@ -12,14 +12,14 @@ rustPlatform.buildRustPackage rec { pname = "cargo-workspaces"; - version = "0.3.0"; + version = "0.3.1"; src = fetchCrate { inherit pname version; - hash = "sha256-1wNoMVfouuPRGFGB6XIhgeeWgknxMctrBl5Vfco6qug="; + hash = "sha256-1YFTBzFr11FUfwgdGJgyF1lWvrfQ6ZPIkYAG7vySfFA="; }; - cargoHash = "sha256-OJGqIo6mYqXjmQb/2CVVTskecYZretw+K46Fvbu/PcQ="; + cargoHash = "sha256-wL1DKZ1QhBKB4Gy2rbwe4y/hR4A/wiiVqGAIcM+Om8E="; nativeBuildInputs = [ pkg-config diff --git a/pkgs/development/tools/rust/cargo-zigbuild/default.nix b/pkgs/development/tools/rust/cargo-zigbuild/default.nix index f454eec74cd32..adc845c67ea70 100644 --- a/pkgs/development/tools/rust/cargo-zigbuild/default.nix +++ b/pkgs/development/tools/rust/cargo-zigbuild/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "cargo-zigbuild"; - version = "0.18.1"; + version = "0.18.3"; src = fetchFromGitHub { owner = "messense"; repo = pname; rev = "v${version}"; - hash = "sha256-YAp3lH2qEhN6Bd9YyLWnSgmppsQY+ssamopWDE1bhiQ="; + hash = "sha256-wL6Rmw5hJI8cJDw2WO9CDOyeOuZv6QoFxrn81JrYBR4="; }; - cargoHash = "sha256-g+uHOqHRCklrjv6uW/5wjfwn473GEXjricQa4qXeliY="; + cargoHash = "sha256-uCZYDh4+Pri77DzqZj12cav7o8eDY2+fgwIwVBdcbHg="; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/development/tools/rust/duckscript/default.nix b/pkgs/development/tools/rust/duckscript/default.nix index 4b53eacb096c7..3b8c27ddbb1ad 100644 --- a/pkgs/development/tools/rust/duckscript/default.nix +++ b/pkgs/development/tools/rust/duckscript/default.nix @@ -13,11 +13,11 @@ rustPlatform.buildRustPackage rec { pname = "duckscript_cli"; - version = "0.9.2"; + version = "0.9.3"; src = fetchCrate { inherit pname version; - hash = "sha256-qvocz/7Fx2YkgPcOYQha5iHQmoU40joGamj/SMiYx+4="; + hash = "sha256-2ouEmI7BH9J+PEN7l3rE8nmd0Khe2Bjq1Bg9SgGnB4E="; }; nativeBuildInputs = [ pkg-config ]; @@ -25,7 +25,7 @@ rustPlatform.buildRustPackage rec { buildInputs = [ openssl ] ++ lib.optionals stdenv.isDarwin [ Security SystemConfiguration libiconv ]; - cargoHash = "sha256-SW3Q/+EhdMNLbhGQPpiIXuJv3ttyeCpjjvbVCrJzXlY="; + cargoHash = "sha256-bBqcHETEWooMgQeqPOZIK/77DdTtGq1JusBKoRj5K6w="; meta = with lib; { description = "Simple, extendable and embeddable scripting language."; diff --git a/pkgs/development/tools/rust/maturin/default.nix b/pkgs/development/tools/rust/maturin/default.nix index 37cec14ee4c4c..fa17f4f036241 100644 --- a/pkgs/development/tools/rust/maturin/default.nix +++ b/pkgs/development/tools/rust/maturin/default.nix @@ -9,16 +9,16 @@ rustPlatform.buildRustPackage rec { pname = "maturin"; - version = "1.3.0"; + version = "1.4.0"; src = fetchFromGitHub { owner = "PyO3"; repo = "maturin"; rev = "v${version}"; - hash = "sha256-MVmu9m+9XhWuPBEEoaYmsSbMFziSZaM5Gg5kOr1DT54="; + hash = "sha256-mD/7wWeclV5Xqii9hcZMustvR6tf7MoyTZ3WsvEc61U="; }; - cargoHash = "sha256-hrdrGFtL2vGczINnvDa4rclkXsNWnEqtTt3NVaRay8w="; + cargoHash = "sha256-w8XpCJ8GS2VszW/9/O2suy82zVO1UpWTrU1lFGYwhvw="; buildInputs = lib.optionals stdenv.isDarwin [ Security libiconv ]; diff --git a/pkgs/development/tools/rust/probe-run/default.nix b/pkgs/development/tools/rust/probe-run/default.nix index 0a1fa745dc355..30ca65f776b07 100644 --- a/pkgs/development/tools/rust/probe-run/default.nix +++ b/pkgs/development/tools/rust/probe-run/default.nix @@ -12,14 +12,14 @@ rustPlatform.buildRustPackage rec { pname = "probe-run"; - version = "0.3.10"; + version = "0.3.11"; src = fetchCrate { inherit pname version; - hash = "sha256-PIUL7aUIHyHuetkMbJsZ3x1coyzKGwI/AJE/R6uFBM4="; + hash = "sha256-RlmN2PV5Z/+NTYia7LhrAW437bsg6oUxlQ1qcbZuq0o="; }; - cargoHash = "sha256-7q5M3huI7Qje5E3Rl2i/9I4g90R8vhJD9Hk78biewBE="; + cargoHash = "sha256-MG3xHArNEqXs0vC5sSyaBM3421yJ25nazvBNQVcs4v0="; nativeBuildInputs = [ pkg-config diff --git a/pkgs/development/tools/rust/rtthost/default.nix b/pkgs/development/tools/rust/rtthost/default.nix deleted file mode 100644 index 8352d4fe71421..0000000000000 --- a/pkgs/development/tools/rust/rtthost/default.nix +++ /dev/null @@ -1,33 +0,0 @@ -{ lib -, stdenv -, rustPlatform -, fetchCrate -, pkg-config -, libusb1 -, DarwinTools -, AppKit -}: - -rustPlatform.buildRustPackage rec { - pname = "rtthost"; - version = "0.22.0"; - - src = fetchCrate { - inherit pname version; - hash = "sha256-Pb7Df3JI6ACcJ81+9KZ8qMM5Y/VT0kO5kubC3g0Wtlk="; - }; - - cargoHash = "sha256-Wb+ZPUrNA3LW4huT1QnyW8RKkh4Ow6gBT1VByHlEwGg="; - - nativeBuildInputs = [ pkg-config ] ++ lib.optionals stdenv.isDarwin [ DarwinTools ]; - - buildInputs = [ libusb1 ] ++ lib.optionals stdenv.isDarwin [ AppKit ]; - - meta = with lib; { - description = "RTT (Real-Time Transfer) client"; - homepage = "https://probe.rs/"; - changelog = "https://github.com/probe-rs/probe-rs/blob/v${version}/CHANGELOG.md"; - license = with licenses; [ asl20 /* or */ mit ]; - maintainers = with maintainers; [ samueltardieu ]; - }; -} diff --git a/pkgs/development/tools/rust/rust-analyzer/default.nix b/pkgs/development/tools/rust/rust-analyzer/default.nix index c6adbd552d17e..a1c8dd591e10f 100644 --- a/pkgs/development/tools/rust/rust-analyzer/default.nix +++ b/pkgs/development/tools/rust/rust-analyzer/default.nix @@ -13,14 +13,14 @@ rustPlatform.buildRustPackage rec { pname = "rust-analyzer-unwrapped"; - version = "2024-01-08"; - cargoSha256 = "sha256-TzY+A0QvtSionE1bL9NHFJzuovUW7N4HCGxLz81CInU="; + version = "2024-01-29"; + cargoSha256 = "sha256-3f+Nc2HXCQsaZ+FFSH7ML0o1yikZWhsRZmA8JtBc2TY="; src = fetchFromGitHub { owner = "rust-lang"; repo = "rust-analyzer"; rev = version; - sha256 = "sha256-fVi0wlgFjp/bXz1LxvbiBB07Aj5ZnNq2xsvrCzDpIDc="; + sha256 = "sha256-6K5rK1b2APQfXOrC+Hm+0QcyfPVt+TV81Q6Fd/QjMlQ="; }; cargoBuildFlags = [ "--bin" "rust-analyzer" "--bin" "rust-analyzer-proc-macro-srv" ]; diff --git a/pkgs/development/tools/rye/Cargo.lock b/pkgs/development/tools/rye/Cargo.lock index a4a5984a04de9..f6e5b5d019661 100644 --- a/pkgs/development/tools/rye/Cargo.lock +++ b/pkgs/development/tools/rye/Cargo.lock @@ -4,9 +4,9 @@ version = 3 [[package]] name = "addr2line" -version = "0.19.0" +version = "0.21.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a76fd60b23679b7d19bd066031410fb7e458ccc5e958eb5c325888ce4baedc97" +checksum = "8a30b2e23b9e17a9f90641c7ab1549cd9b44f296d3ccbf309d2863cfe398a0cb" dependencies = [ "gimli", ] @@ -29,9 +29,9 @@ dependencies = [ [[package]] name = "age" -version = "0.9.1" +version = "0.9.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d9e4dfef09bebad6d85efa8b6e1b2f7a809c4419d7135ab573c4fd133c0e8ead" +checksum = "6d55a4d912c80a92762ffd1c884065f3f9646467d22c95390e824a0ff7def472" dependencies = [ "age-core", "base64 0.13.1", @@ -74,44 +74,42 @@ dependencies = [ [[package]] name = "ahash" -version = "0.7.6" +version = "0.8.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "fcb51a0695d8f838b1ee009b3fbf66bda078cd64590202a864a8f3e8c4315c47" +checksum = "77c3a9648d43b9cd48db467b3f87fdd6e146bcc88ab0180006cef2179fe11d01" dependencies = [ - "getrandom 0.2.9", + "cfg-if", "once_cell", "version_check", + "zerocopy", ] [[package]] name = "aho-corasick" -version = "0.7.20" +version = "1.1.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "cc936419f96fa211c1b9166887b38e5e40b19958e5b895be7c1f93adec7071ac" +checksum = "b2969dcb958b36655471fc61f7e416fa76033bdd4bfed0678d8fee1e2d07a1f0" dependencies = [ "memchr", ] [[package]] -name = "aho-corasick" -version = "1.0.1" +name = "allocator-api2" +version = "0.2.16" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "67fc08ce920c31afb70f013dcce1bfc3a3195de6a228474e45e1f145b36f8d04" -dependencies = [ - "memchr", -] +checksum = "0942ffc6dcaadf03badf6e6a2d0228460359d5e34b57ccdc720b7382dfbd5ec5" [[package]] name = "anstyle" -version = "1.0.0" +version = "1.0.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "41ed9a86bf92ae6580e0a31281f65a1b1d867c0cc68d5346e2ae128dddfa6a7d" +checksum = "7079075b41f533b8c61d2a4d073c4676e1f8b249ff94a393b0595db304e0dd87" [[package]] name = "anyhow" -version = "1.0.71" +version = "1.0.79" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9c7d0618f0e0b7e8ff11427422b64564d5fb0be1940354bfe2e0529b18a9d9b8" +checksum = "080e9890a082662b09c1ad45f567faeeb47f22b5fb23895fbe1e651e718e25ca" dependencies = [ "backtrace", ] @@ -130,15 +128,15 @@ checksum = "d468802bab17cbc0cc575e9b053f41e72aa36bfa6b7f55e3529ffa43161b97fa" [[package]] name = "backtrace" -version = "0.3.67" +version = "0.3.69" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "233d376d6d185f2a3093e58f283f60f880315b6c60075b01f36b3b85154564ca" +checksum = "2089b7e3f35b9dd2d0ed921ead4f6d318c27680d4a5bd167b3ee120edb105837" dependencies = [ "addr2line", "cc", "cfg-if", "libc", - "miniz_oxide 0.6.2", + "miniz_oxide", "object", "rustc-demangle", ] @@ -151,9 +149,9 @@ checksum = "9e1b586273c5702936fe7b7d6896644d8be71e6314cfe09d3167c95f712589e8" [[package]] name = "base64" -version = "0.21.2" +version = "0.21.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "604178f6c5c21f02dc555784810edfb88d34ac2c73b2eae109655649ee73ce3d" +checksum = "9d297deb1925b89f2ccc13d7635fa0714f12c87adce1c75356b39ca9b7178567" [[package]] name = "bech32" @@ -168,6 +166,12 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "bef38d45163c2f1dde094a7dfd33ccf595c92905c8f8f4fdc18d06fb1037718a" [[package]] +name = "bitflags" +version = "2.4.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "ed570934406eb16438a4e976b1b4500774099c13b8cb96eec99f620f05090ddf" + +[[package]] name = "block-buffer" version = "0.10.4" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -178,19 +182,25 @@ dependencies = [ [[package]] name = "bstr" -version = "1.4.0" +version = "1.9.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c3d4260bcc2e8fc9df1eac4919a720effeb63a3f0952f5bf4944adfa18897f09" +checksum = "c48f0051a4b4c5e0b6d365cd04af53aeaa209e3cc15ec2cdb69e73cc87fbd0dc" dependencies = [ "memchr", "serde", ] [[package]] +name = "bumpalo" +version = "3.14.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "7f30e7476521f6f8af1a1c4c0b8cc94f0bee37d91763d0ca2665f299b6cd8aec" + +[[package]] name = "byteorder" -version = "1.4.3" +version = "1.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "14c189c53d098945499cdfa7ecc63567cf3886b3332b312a5b4585d8d3a6a610" +checksum = "1fd0f2584146f6f2ef48085050886acf353beff7305ebd1ae69500e27c67f64b" [[package]] name = "bzip2" @@ -215,11 +225,12 @@ dependencies = [ [[package]] name = "cc" -version = "1.0.79" +version = "1.0.83" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "50d30906286121d95be3d479533b458f87493b30a4b5f79a607db8f5d11aa91f" +checksum = "f1174fb0b6ec23863f8b971027804a42614e347eafb0a95bf0b12cdae21fc4d0" dependencies = [ "jobserver", + "libc", ] [[package]] @@ -275,9 +286,9 @@ dependencies = [ [[package]] name = "chumsky" -version = "0.9.2" +version = "0.9.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "23170228b96236b5a7299057ac284a321457700bc8c41a4476052f0f4ba5349d" +checksum = "8eebd66744a15ded14960ab4ccdbfb51ad3b81f51f3f04a80adac98c985396c9" dependencies = [ "hashbrown", "stacker", @@ -296,71 +307,69 @@ dependencies = [ [[package]] name = "clap" -version = "4.3.5" +version = "4.4.18" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2686c4115cb0810d9a984776e197823d08ec94f176549a89a9efded477c456dc" +checksum = "1e578d6ec4194633722ccf9544794b71b1385c3c027efe0c55db226fc880865c" dependencies = [ "clap_builder", "clap_derive", - "once_cell", ] [[package]] name = "clap_builder" -version = "4.3.5" +version = "4.4.18" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2e53afce1efce6ed1f633cf0e57612fe51db54a1ee4fd8f8503d078fe02d69ae" +checksum = "4df4df40ec50c46000231c914968278b1eb05098cf8f1b3a518a95030e71d1c7" dependencies = [ "anstyle", - "bitflags", "clap_lex", "terminal_size", ] [[package]] name = "clap_complete" -version = "4.2.3" +version = "4.4.9" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1594fe2312ec4abf402076e407628f5c313e54c32ade058521df4ee34ecac8a8" +checksum = "df631ae429f6613fcd3a7c1adbdb65f637271e561b03680adaa6573015dfb106" dependencies = [ "clap", ] [[package]] name = "clap_derive" -version = "4.3.2" +version = "4.4.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b8cd2b2a819ad6eec39e8f1d6b53001af1e5469f8c177579cdaeb313115b825f" +checksum = "cf9804afaaf59a91e75b022a30fb7229a7901f60c755489cc61c9b423b836442" dependencies = [ "heck", "proc-macro2", "quote", - "syn 2.0.29", + "syn 2.0.48", ] [[package]] name = "clap_lex" -version = "0.5.0" +version = "0.6.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2da6da31387c7e4ef160ffab6d5e7f00c42626fe39aea70a7b0f1773f7dd6c1b" +checksum = "702fc72eb24e5a1e48ce58027a675bc24edd52096d5397d4aea7c6dd9eca0bd1" [[package]] name = "configparser" -version = "3.0.2" +version = "3.0.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5458d9d1a587efaf5091602c59d299696a3877a439c8f6d461a2d3cce11df87a" +checksum = "4ec6d3da8e550377a85339063af6e3735f4b1d9392108da4e083a1b3b9820288" [[package]] name = "console" -version = "0.15.7" +version = "0.15.8" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c926e00cc70edefdc64d3a5ff31cc65bb97a3460097762bd23afb4d8145fccf8" +checksum = "0e1f83fc076bd6dd27517eacdf25fef6c4dfe5f1d7448bafaaf3a26f13b5e4eb" dependencies = [ "encode_unicode", "lazy_static", "libc", "unicode-width", - "windows-sys 0.45.0", + "windows-sys 0.52.0", ] [[package]] @@ -371,15 +380,15 @@ checksum = "396de984970346b0d9e93d1415082923c679e5ae5c3ee3dcbd104f5610af126b" [[package]] name = "core-foundation-sys" -version = "0.8.4" +version = "0.8.6" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e496a50fda8aacccc86d7529e2c1e0892dbd0f898a6b5645b5561b89c3210efa" +checksum = "06ea2b9bc92be3c2baa9334a323ebca2d6f074ff852cd1d7b11064035cd3868f" [[package]] name = "cpufeatures" -version = "0.2.7" +version = "0.2.12" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3e4c1eaa2012c47becbbad2ab175484c2a84d1185b566fb2cc5b8707343dfe58" +checksum = "53fe5e26ff1b7aef8bca9c6080520cfb8d9333c7568e1829cef191a9723e5504" dependencies = [ "libc", ] @@ -394,47 +403,29 @@ dependencies = [ ] [[package]] -name = "crossbeam-channel" -version = "0.5.8" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a33c2bf77f2df06183c3aa30d1e96c0695a313d4f9c453cc3762a6db39f99200" -dependencies = [ - "cfg-if", - "crossbeam-utils", -] - -[[package]] name = "crossbeam-deque" -version = "0.8.3" +version = "0.8.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ce6fd6f855243022dcecf8702fef0c297d4338e226845fe067f6341ad9fa0cef" +checksum = "613f8cc01fe9cf1a3eb3d7f488fd2fa8388403e97039e2f73692932e291a770d" dependencies = [ - "cfg-if", "crossbeam-epoch", "crossbeam-utils", ] [[package]] name = "crossbeam-epoch" -version = "0.9.15" +version = "0.9.18" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ae211234986c545741a7dc064309f67ee1e5ad243d0e48335adc0484d960bcc7" +checksum = "5b82ac4a3c2ca9c3460964f020e1402edd5753411d7737aa39c3714ad1b5420e" dependencies = [ - "autocfg", - "cfg-if", "crossbeam-utils", - "memoffset", - "scopeguard", ] [[package]] name = "crossbeam-utils" -version = "0.8.15" +version = "0.8.19" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3c063cd8cc95f5c377ed0d4b49a4b21f632396ff690e8470c29b3359b346984b" -dependencies = [ - "cfg-if", -] +checksum = "248e3bacc7dc6baa3b21e405ee045c3047101a49145e7e9eca583ab4c2ca5345" [[package]] name = "crypto-common" @@ -447,6 +438,16 @@ dependencies = [ ] [[package]] +name = "ctrlc" +version = "3.4.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "b467862cc8610ca6fc9a1532d7777cee0804e678ab45410897b9396495994a0b" +dependencies = [ + "nix", + "windows-sys 0.52.0", +] + +[[package]] name = "curl" version = "0.4.44" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -463,9 +464,9 @@ dependencies = [ [[package]] name = "curl-sys" -version = "0.4.67+curl-8.3.0" +version = "0.4.70+curl-8.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3cc35d066510b197a0f72de863736641539957628c8a42e70e27c66849e77c34" +checksum = "3c0333d8849afe78a4c8102a429a446bfdd055832af071945520e835ae2d841e" dependencies = [ "cc", "libc", @@ -526,9 +527,9 @@ dependencies = [ [[package]] name = "dashmap" -version = "5.4.0" +version = "5.5.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "907076dfda823b0b36d2a1bb5f90c96660a5bbcd7729e10727f07858f22c4edc" +checksum = "978747c1d849a7d2ee5e8adc0159961c48fb7e5db2f06af6723b80123bb53856" dependencies = [ "cfg-if", "hashbrown", @@ -539,9 +540,9 @@ dependencies = [ [[package]] name = "data-encoding" -version = "2.4.0" +version = "2.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c2e66c9d817f1720209181c316d28635c050fa304f9c79e47a520882661b7308" +checksum = "7e962a19be5cfc3f3bf6dd8f61eb50107f356ad6270fbb3ed41476571db78be5" [[package]] name = "decompress" @@ -556,7 +557,16 @@ dependencies = [ "regex", "tar", "thiserror", - "zstd", + "zstd 0.12.4", +] + +[[package]] +name = "deranged" +version = "0.3.11" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "b42b6fa04a440b495c8b04d0e71b707c585f83cb9cb28cf8cd0d976c315e31b4" +dependencies = [ + "powerfmt", ] [[package]] @@ -592,9 +602,9 @@ dependencies = [ [[package]] name = "deunicode" -version = "0.4.3" +version = "1.4.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "850878694b7933ca4c9569d30a34b55031b9b139ee1fc7b94a527c4ef960d690" +checksum = "3ae2a35373c5c74340b79ae6780b498b2b183915ec5dacf263aac5a099bf485a" [[package]] name = "dialoguer" @@ -619,9 +629,9 @@ dependencies = [ [[package]] name = "digest" -version = "0.10.6" +version = "0.10.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8168378f4e5023e7218c89c891c0fd8ecdb5e5e4f18cb78f38cf245dd021e76f" +checksum = "9ed9a281f7bc9b7576e61468ba615a66a5c8cfdff42420a70aa82701a3b1e292" dependencies = [ "block-buffer", "crypto-common", @@ -636,14 +646,14 @@ checksum = "487585f4d0c6655fe74905e2504d8ad6908e4db67f744eb140876906c2f3175d" dependencies = [ "proc-macro2", "quote", - "syn 2.0.29", + "syn 2.0.48", ] [[package]] name = "either" -version = "1.8.1" +version = "1.9.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = 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[[package]] -name = "errno-dragonfly" -version = "0.1.2" +name = "errno" +version = "0.3.8" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "aa68f1b12764fab894d2755d2518754e71b4fd80ecfb822714a1206c2aab39bf" +checksum = "a258e46cdc063eb8519c00b9fc845fc47bcfca4130e2f08e88665ceda8474245" dependencies = [ - "cc", "libc", + "windows-sys 0.52.0", ] [[package]] @@ -691,15 +696,21 @@ dependencies = [ ] [[package]] +name = "fastrand" +version = "2.0.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "25cbce373ec4653f1a01a31e8a5e5ec0c622dc27ff9c4e6606eefef5cbbed4a5" + +[[package]] name = "filetime" -version = "0.2.21" +version = "0.2.23" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5cbc844cecaee9d4443931972e1289c8ff485cb4cc2767cb03ca139ed6885153" +checksum = "1ee447700ac8aa0b2f2bd7bc4462ad686ba06baa6727ac149a2d6277f0d240fd" dependencies = [ "cfg-if", "libc", - "redox_syscall 0.2.16", - "windows-sys 0.48.0", + "redox_syscall", + "windows-sys 0.52.0", ] [[package]] @@ -713,12 +724,12 @@ dependencies = [ [[package]] name = "flate2" -version = "1.0.26" +version = "1.0.28" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3b9429470923de8e8cbd4d2dc513535400b4b3fef0319fb5c4e1f520a7bef743" +checksum = "46303f565772937ffe1d394a4fac6f411c6013172fadde9dcdb1e147a086940e" dependencies = [ "crc32fast", - "miniz_oxide 0.7.1", + "miniz_oxide", ] [[package]] @@ -742,7 +753,7 @@ dependencies = [ "intl-memoizer", "intl_pluralrules", "rustc-hash", - "self_cell", + "self_cell 0.10.3", "smallvec", "unic-langid", ] @@ -773,18 +784,31 @@ checksum = "3f9eec918d3f24069decb9af1554cad7c880e2da24a9afd88aca000531ab82c1" [[package]] name = "form_urlencoded" -version = "1.1.0" +version = "1.2.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a9c384f161156f5260c24a097c56119f9be8c798586aecc13afbcbe7b7e26bf8" +checksum = 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"allocator-api2", ] [[package]] @@ -876,12 +900,6 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "95505c38b4572b2d910cecb0281560f54b440a19336cbbcb27bf6ce6adc6f5a8" [[package]] -name = "hermit-abi" -version = "0.3.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "fed44880c466736ef9a5c5b5facefb5ed0785676d0c02d612db14e54f0d84286" - -[[package]] name = "hex" version = "0.4.3" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -889,9 +907,9 @@ checksum = "7f24254aa9a54b5c858eaee2f5bccdb46aaf0e486a595ed5fd8f86ba55232a70" [[package]] name = "hkdf" -version = "0.12.3" +version = "0.12.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "791a029f6b9fc27657f6f188ec6e5e43f6911f6f878e0dc5501396e09809d437" +checksum = "7b5f8eb2ad728638ea2c7d47a21db23b7b58a72ed6a38256b8a1849f15fbbdf7" dependencies = [ "hmac", ] @@ -902,28 +920,37 @@ version = "0.12.1" source = 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"find-crate", "i18n-config", "proc-macro2", "quote", - "syn 1.0.109", + "syn 2.0.48", ] [[package]] @@ -982,9 +1009,9 @@ checksum = "b9e0384b61958566e926dc50660321d12159025e767c18e043daf26b70104c39" [[package]] name = "idna" -version = "0.3.0" +version = "0.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e14ddfc70884202db2244c223200c204c2bda1bc6e0998d11b5e024d657209e6" +checksum = "634d9b1461af396cad843f47fdba5597a4f9e6ddd4bfb6ff5d85028c25cb12f6" dependencies = [ "unicode-bidi", "unicode-normalization", @@ -992,23 +1019,24 @@ dependencies = [ [[package]] name = "indexmap" -version = "1.9.3" +version = "2.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "bd070e393353796e801d209ad339e89596eb4c8d430d18ede6a1cced8fafbd99" +checksum = "cf2a4f498956c7723dc280afc6a37d0dec50b39a29e232c6187ce4503703e8c2" dependencies = [ - "autocfg", + "equivalent", "hashbrown", ] [[package]] name = "indicatif" -version = "0.17.3" +version = 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source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "56ee889ecc9568871456d42f603d6a0ce59ff328d291063a45cbdf0036baf6db" +checksum = "037731f5d3aaa87a5675e895b63ddff1a87624bc29f77004ea829809654e48f6" dependencies = [ "cc", "libc", @@ -1126,9 +1143,9 @@ dependencies = [ [[package]] name = "license" -version = "3.1.1" +version = "3.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b66615d42e949152327c402e03cd29dab8bff91ce470381ac2ca6d380d8d9946" +checksum = "778718185117620a06e95d2b1e57d50166b1d6bfad93c8abfc1b3344c863ad8c" dependencies = [ "reword", "serde", @@ -1137,15 +1154,15 @@ dependencies = [ [[package]] name = "linux-raw-sys" -version = "0.3.7" +version = "0.4.13" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ece97ea872ece730aed82664c424eb4c8291e1ff2480247ccf7409044bc6479f" +checksum = "01cda141df6706de531b6c46c3a33ecca755538219bd484262fa09410c13539c" [[package]] name = "lock_api" -version = 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+ "thiserror", + "toml 0.8.8", "tracing", "unscanny", + "ureq", + "zstd 0.13.0", ] [[package]] name = "nix" -version = "0.26.2" +version = "0.27.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "bfdda3d196821d6af13126e40375cdf7da646a96114af134d5f417a9a1dc8e1a" +checksum = "2eb04e9c688eff1c89d72b407f168cf79bb9e867a9d3323ed6c01519eb9cc053" dependencies = [ - "bitflags", + "bitflags 2.4.2", "cfg-if", "libc", - "static_assertions", ] [[package]] -name = "no-std-compat" -version = "0.4.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b93853da6d84c2e3c7d730d6473e8817692dd89be387eb01b94d7f108ecb5b8c" - -[[package]] name = "nom" version = "7.1.3" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -1273,16 +1271,6 @@ dependencies = [ ] [[package]] -name = "num_cpus" -version = "1.16.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = 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+1305,18 @@ checksum = "ff011a302c396a5197692431fc1948019154afc178baf7d8e37367442a4601cf" [[package]] name = "openssl-src" -version = "111.25.3+1.1.1t" +version = "300.2.1+3.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "924757a6a226bf60da5f7dd0311a34d2b52283dd82ddeb103208ddc66362f80c" +checksum = "3fe476c29791a5ca0d1273c697e96085bbabbbea2ef7afd5617e78a4b40332d3" dependencies = [ "cc", ] [[package]] name = "openssl-sys" -version = "0.9.87" +version = "0.9.99" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8e17f59264b2809d77ae94f0e1ebabc434773f370d6ca667bd223ea10e06cc7e" +checksum = "22e1bf214306098e4832460f797824c05d25aacdf896f64a985fb0fd992454ae" dependencies = [ "cc", "libc", @@ -1349,15 +1337,15 @@ dependencies = [ [[package]] name = "parking_lot_core" -version = "0.9.7" +version = "0.9.9" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9069cbb9f99e3a5083476ccb29ceb1de18b9118cafa53e90c9551235de2b9521" +checksum = "4c42a9226546d68acdd9c0a280d17ce19bfe27a46bf68784e4066115788d008e" dependencies = [ "cfg-if", "libc", - "redox_syscall 0.2.16", + "redox_syscall", "smallvec", - "windows-sys 0.45.0", + "windows-targets 0.48.5", ] [[package]] @@ -1372,27 +1360,26 @@ version = "0.11.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "83a0692ec44e4cf1ef28ca317f14f8f07da2d95ec3fa01f86e4467b725e60917" dependencies = [ - "digest 0.10.6", + "digest 0.10.7", ] [[package]] name = "pep440_rs" -version = "0.3.9" +version = "0.3.12" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "fe1d15693a11422cfa7d401b00dc9ae9fb8edbfbcb711a77130663f4ddf67650" +checksum = "887f66cc62717ea72caac4f1eb4e6f392224da3ffff3f40ec13ab427802746d6" dependencies = [ "lazy_static", "regex", "serde", - "tracing", "unicode-width", ] [[package]] name = "pep508_rs" -version = "0.2.1" +version = "0.2.3" source = 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+version = "1.1.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "069bdb1e05adc7a8990dce9cc75370895fbe4e3d58b9b73bf1aee56359344a55" +checksum = "266c042b60c9c76b8d53061e52b2e0d1116abc57cefc8c5cd671619a56ac3690" dependencies = [ "proc-macro2", "quote", - "syn 1.0.109", + "syn 2.0.48", ] [[package]] name = "pin-project-lite" -version = "0.2.9" +version = "0.2.13" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e0a7ae3ac2f1173085d398531c705756c94a4c56843785df85a60c1a0afac116" +checksum = "8afb450f006bf6385ca15ef45d71d2288452bc3683ce2e2cacc0d18e4be60b58" [[package]] name = "pkg-config" -version = "0.3.27" +version = "0.3.29" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "26072860ba924cbfa98ea39c8c19b4dd6a4a25423dbdf219c1eca91aa0cf6964" +checksum = "2900ede94e305130c13ddd391e0ab7cbaeb783945ae07a279c268cb05109c6cb" [[package]] name = "poly1305" @@ -1455,18 +1442,15 @@ dependencies = [ [[package]] name = "portable-atomic" -version = "0.3.20" +version = "1.6.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e30165d31df606f5726b090ec7592c308a0eaf61721ff64c9a3018e344a8753e" -dependencies = [ - "portable-atomic 1.3.2", -] +checksum = "7170ef9988bc169ba16dd36a7fa041e5c4cbeb6a35b76d4c03daded371eae7c0" [[package]] -name = "portable-atomic" -version = "1.3.2" +name = "powerfmt" +version = "0.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "dc59d1bcc64fc5d021d67521f818db868368028108d37f0e98d74e33f68297b5" +checksum = "439ee305def115ba05938db6eb1644ff94165c5ab5e9420d1c1bcedbba909391" [[package]] name = "ppv-lite86" @@ -1500,9 +1484,9 @@ dependencies = [ [[package]] name = "proc-macro2" -version = "1.0.66" +version = "1.0.78" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "18fb31db3f9bddb2ea821cde30a9f70117e3f119938b5ee630b7403aa6e2ead9" +checksum = "e2422ad645d89c99f8f3e6b88a9fdeca7fabeac836b1002371c4367c8f984aae" dependencies = [ "unicode-ident", ] @@ -1518,9 +1502,9 @@ dependencies = [ [[package]] name = "python-pkginfo" -version = "0.5.6" +version = "0.6.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e23988cc0f9fbe3c42ae6e399daa7c0273d6013784b744b1742c6e1060611b0e" +checksum = "037469c164f08c891bf6d69ca02f1d56210011451e229618669777df82124cfa" dependencies = [ "flate2", "fs-err", @@ -1534,9 +1518,9 @@ dependencies = [ [[package]] name = "quote" -version = "1.0.33" +version = "1.0.35" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5267fca4496028628a95160fc423a33e8b2e6af8a5302579e322e4b520293cae" +checksum = "291ec9ab5efd934aaf503a6466c5d5251535d108ee747472c3977cc5acc868ef" dependencies = [ "proc-macro2", ] @@ -1548,6 +1532,12 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "5a3866219251662ec3b26fc217e3e05bf9c4f84325234dfb96bf0bf840889e49" [[package]] +name = "quoted_printable" +version = "0.5.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "79ec282e887b434b68c18fe5c121d38e72a5cf35119b59e54ec5b992ea9c8eb0" + +[[package]] name = "rand" version = "0.7.3" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -1606,7 +1596,7 @@ version = "0.6.4" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "ec0be4795e2f6a28069bec0b5ff3e2ac9bafc99e6a9a7dc3547996c5c816922c" dependencies = [ - "getrandom 0.2.9", + "getrandom 0.2.12", ] [[package]] @@ -1620,9 +1610,9 @@ dependencies = [ [[package]] name = "rayon" -version = "1.7.0" +version = "1.8.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1d2df5196e37bcc87abebc0053e20787d73847bb33134a69841207dd0a47f03b" +checksum = "fa7237101a77a10773db45d62004a272517633fbcc3df19d96455ede1122e051" dependencies = [ "either", "rayon-core", @@ -1630,41 +1620,30 @@ dependencies = [ [[package]] name = "rayon-core" -version = "1.11.0" +version = "1.12.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4b8f95bd6966f5c87776639160a66bd8ab9895d9d4ab01ddba9fc60661aebe8d" +checksum = "1465873a3dfdaa8ae7cb14b4383657caab0b3e8a0aa9ae8e04b044854c8dfce2" dependencies = [ - "crossbeam-channel", "crossbeam-deque", "crossbeam-utils", - "num_cpus", -] - -[[package]] -name = "redox_syscall" -version = "0.2.16" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "fb5a58c1855b4b6819d59012155603f0b22ad30cad752600aadfcb695265519a" -dependencies = [ - "bitflags", ] [[package]] name = "redox_syscall" -version = "0.3.5" +version = "0.4.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "567664f262709473930a4bf9e51bf2ebf3348f2e748ccc50dea20646858f8f29" +checksum = "4722d768eff46b75989dd134e5c353f0d6296e5aaa3132e776cbdb56be7731aa" dependencies = [ - "bitflags", + "bitflags 1.3.2", ] [[package]] name = "regex" -version = "1.9.1" +version = "1.10.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b2eae68fc220f7cf2532e4494aded17545fce192d59cd996e0fe7887f4ceb575" +checksum = "b62dbe01f0b06f9d8dc7d49e05a0785f153b00b2c227856282f671e0318c9b15" dependencies = [ - "aho-corasick 1.0.1", + "aho-corasick", "memchr", "regex-automata", "regex-syntax", @@ -1672,20 +1651,20 @@ dependencies = [ [[package]] name = "regex-automata" -version = "0.3.3" +version = "0.4.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "39354c10dd07468c2e73926b23bb9c2caca74c5501e38a35da70406f1d923310" +checksum = "5bb987efffd3c6d0d8f5f89510bb458559eab11e4f869acb20bf845e016259cd" dependencies = [ - "aho-corasick 1.0.1", + "aho-corasick", "memchr", "regex-syntax", ] [[package]] name = "regex-syntax" -version = "0.7.4" +version = "0.8.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = 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dependencies = [ "proc-macro2", "quote", @@ -2051,9 +2078,9 @@ dependencies = [ [[package]] name = "sysinfo" -version = "0.29.9" +version = "0.29.11" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a8d0e9cc2273cc8d31377bdd638d72e3ac3e5607b18621062b169d02787f1bab" +checksum = "cd727fc423c2060f6c92d9534cef765c65a6ed3f428a03d7def74a8c4348e666" dependencies = [ "cfg-if", "core-foundation-sys", @@ -2066,9 +2093,9 @@ dependencies = [ [[package]] name = "tar" -version = "0.4.38" +version = "0.4.40" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4b55807c0344e1e6c04d7c965f5289c39a8d94ae23ed5c0b57aabac549f871c6" +checksum = "b16afcea1f22891c49a00c751c7b63b2233284064f11a200fc624137c51e2ddb" dependencies = [ "filetime", "libc", @@ -2076,23 +2103,29 @@ dependencies = [ ] [[package]] +name = "target-lexicon" +version = "0.12.13" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = 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"74d4d3961e53fa4c9a25a8637fc2bfaf2595b3d3ae34875568a5cf64787716be" +dependencies = [ + "zerocopy-derive", +] + +[[package]] +name = "zerocopy-derive" +version = "0.7.32" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "9ce1b18ccd8e73a9321186f97e46f9f04b778851177567b1975109d26a08d2a6" +dependencies = [ + "proc-macro2", + "quote", + "syn 2.0.48", ] [[package]] name = "zeroize" -version = "1.6.0" +version = "1.7.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2a0956f1ba7c7909bfb66c2e9e4124ab6f6482560f6628b5aaeba39207c9aad9" +checksum = "525b4ec142c6b68a2d10f01f7bbf6755599ca3f81ea53b8431b7dd348f5fdb2d" dependencies = [ "zeroize_derive", ] @@ -2625,14 +2762,14 @@ checksum = "ce36e65b0d2999d2aafac989fb249189a141aee1f53c612c1f37d72631959f69" dependencies = [ "proc-macro2", "quote", - "syn 2.0.29", + "syn 2.0.48", ] [[package]] name = "zip" -version = "0.6.5" +version = "0.6.6" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7e92305c174683d78035cbf1b70e18db6329cc0f1b9cae0a52ca90bf5bfe7125" +checksum = "760394e246e4c28189f19d488c058bf16f564016aefac5d32bb1f3b51d5e9261" dependencies = [ "byteorder", "bzip2", @@ -2644,30 +2781,47 @@ dependencies = [ [[package]] name = "zstd" -version = "0.12.3+zstd.1.5.2" +version = "0.12.4" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "1a27595e173641171fc74a1232b7b1c7a7cb6e18222c11e9dfb9888fa424c53c" +dependencies = [ + "zstd-safe 6.0.6", +] + +[[package]] +name = "zstd" +version = "0.13.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "76eea132fb024e0e13fd9c2f5d5d595d8a967aa72382ac2f9d39fcc95afd0806" +checksum = "bffb3309596d527cfcba7dfc6ed6052f1d39dfbd7c867aa2e865e4a449c10110" dependencies = [ - "zstd-safe", + "zstd-safe 7.0.0", ] [[package]] name = "zstd-safe" -version = "6.0.5+zstd.1.5.4" +version = "6.0.6" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d56d9e60b4b1758206c238a10165fbcae3ca37b01744e394c463463f6529d23b" +checksum = "ee98ffd0b48ee95e6c5168188e44a54550b1564d9d530ee21d5f0eaed1069581" dependencies = [ "libc", "zstd-sys", ] [[package]] +name = "zstd-safe" +version = "7.0.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "43747c7422e2924c11144d5229878b98180ef8b06cca4ab5af37afc8a8d8ea3e" +dependencies = [ + "zstd-sys", +] + +[[package]] name = "zstd-sys" -version = "2.0.8+zstd.1.5.5" +version = "2.0.9+zstd.1.5.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5556e6ee25d32df2586c098bbfa278803692a20d0ab9565e049480d52707ec8c" +checksum = "9e16efa8a874a0481a574084d34cc26fdb3b99627480f785888deb6386506656" dependencies = [ "cc", - "libc", "pkg-config", ] diff --git a/pkgs/development/tools/rye/default.nix b/pkgs/development/tools/rye/default.nix index 5a40f695419a2..6ed67fd5bdfff 100644 --- a/pkgs/development/tools/rye/default.nix +++ b/pkgs/development/tools/rye/default.nix @@ -12,20 +12,20 @@ rustPlatform.buildRustPackage rec { pname = "rye"; - version = "0.16.0"; + version = "0.21.0"; src = fetchFromGitHub { owner = "mitsuhiko"; repo = "rye"; rev = "refs/tags/${version}"; - hash = "sha256-AIM61JEgWMDjeZVnOVamBiCXTT5LLEktwQpRtnflgcw="; + hash = "sha256-H41gJNNrelPyCP1EYXIjwEc+1v2lnw9xmm0J+12lENA="; }; cargoLock = { lockFile = ./Cargo.lock; outputHashes = { "dialoguer-0.10.4" = "sha256-WDqUKOu7Y0HElpPxf2T8EpzAY3mY8sSn9lf0V0jyAFc="; - "monotrail-utils-0.0.1" = "sha256-4x5jnXczXnToU0QXpFalpG5A+7jeyaEBt8vBwxbFCKQ="; + "monotrail-utils-0.0.1" = "sha256-h2uxWsDrU9j2C5OWbYsfGz0S1VsPzYrfksQVEkwd2ys="; }; }; diff --git a/pkgs/development/tools/schemacrawler/default.nix b/pkgs/development/tools/schemacrawler/default.nix index 4328965c3cc31..c47ea26c745c9 100644 --- a/pkgs/development/tools/schemacrawler/default.nix +++ b/pkgs/development/tools/schemacrawler/default.nix @@ -7,11 +7,11 @@ stdenv.mkDerivation (finalAttrs: { pname = "schemacrawler"; - version = "16.20.7"; + version = "16.21.1"; src = fetchzip { url = "https://github.com/schemacrawler/SchemaCrawler/releases/download/v${finalAttrs.version}/schemacrawler-${finalAttrs.version}-bin.zip"; - hash = "sha256-5TyciQVrJhu8RlT6feHEH9H43fi1NWJX1dGipebf46k="; + hash = "sha256-9tZGSWOUpQAAOQAbYxx0w734EKq2BdSYyIR4zmor4+Y="; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/development/tools/sd-local/default.nix b/pkgs/development/tools/sd-local/default.nix index 56fff1c2d56b6..b8a01e2633b52 100644 --- a/pkgs/development/tools/sd-local/default.nix +++ b/pkgs/development/tools/sd-local/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "sd-local"; - version = "1.0.51"; + version = "1.0.52"; src = fetchFromGitHub { owner = "screwdriver-cd"; repo = pname; rev = "v${version}"; - sha256 = "sha256-CKbOgZ9dnQ5ao5fQYMbPhMNS5ww4N54ECHKhhdBEII8="; + sha256 = "sha256-2EWLi42ztuohouhMZ3DXa2wHx1tgPAUH0IKbn6lQeF0="; }; vendorHash = "sha256-uHu8jPPQCJAhXE+Lzw5/9wyw7sL5REQJsPsYII+Nusc="; diff --git a/pkgs/development/tools/sem/default.nix b/pkgs/development/tools/sem/default.nix index fc4b32785d39b..76741e773110b 100644 --- a/pkgs/development/tools/sem/default.nix +++ b/pkgs/development/tools/sem/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "sem"; - version = "0.28.5"; + version = "0.28.6"; src = fetchFromGitHub { owner = "semaphoreci"; repo = "cli"; rev = "v${version}"; - sha256 = "sha256-XprWg6JZBBqHQmbdNyKaNLFyxTGkaGzMPLanISYIjYY="; + sha256 = "sha256-8zGgqa0z3KYSYVaYlSnTET7QJ+Mdp+FVJ5MD2pyh7Ns="; }; vendorHash = "sha256-p8+M+pRp12P7tYlFpXjU94JcJOugQpD8rFdowhonh74="; diff --git a/pkgs/development/tools/semantic-release/default.nix b/pkgs/development/tools/semantic-release/default.nix index 87533c0e3359c..ee550a7c1f7a2 100644 --- a/pkgs/development/tools/semantic-release/default.nix +++ b/pkgs/development/tools/semantic-release/default.nix @@ -8,16 +8,16 @@ buildNpmPackage rec { pname = "semantic-release"; - version = "22.0.12"; + version = "23.0.0"; src = fetchFromGitHub { owner = "semantic-release"; repo = "semantic-release"; rev = "v${version}"; - hash = "sha256-enBfQapJdssMiwu07f3EZO80iTy+/XLot2W+rHfmN4I="; + hash = "sha256-UXh/3ziNuTvLjd54l7oUOZgbu0+Hy4+a5TUp9dEvAJw="; }; - npmDepsHash = "sha256-8m6j4OHupcrU21MHvePmqNAAx2ANEu5YVV96WnTxTL4="; + npmDepsHash = "sha256-RgqerFVG0qdJ52zTvsgtczGcdKw6taiIpgA2LHPELws="; dontNpmBuild = true; diff --git a/pkgs/development/tools/sentry-cli/default.nix b/pkgs/development/tools/sentry-cli/default.nix index 242fc6b7329c3..789b02112a4ee 100644 --- a/pkgs/development/tools/sentry-cli/default.nix +++ b/pkgs/development/tools/sentry-cli/default.nix @@ -10,13 +10,13 @@ }: rustPlatform.buildRustPackage rec { pname = "sentry-cli"; - version = "2.23.2"; + version = "2.27.0"; src = fetchFromGitHub { owner = "getsentry"; repo = "sentry-cli"; rev = version; - sha256 = "sha256-txxDA/8pQDiZsoxrdWz6JZmjpyeILWHl1rUHzPacJN8="; + sha256 = "sha256-dhIja1f+57QdgE0uYBNbgSsmFNE7h0GdcyBx4Z8bGpA="; }; doCheck = false; @@ -26,7 +26,7 @@ rustPlatform.buildRustPackage rec { buildInputs = [ openssl ] ++ lib.optionals stdenv.isDarwin [ CoreServices Security SystemConfiguration ]; nativeBuildInputs = [ pkg-config ]; - cargoHash = "sha256-KytXqILji1pbiMz7OX+O5B2bw5MMlKf/MYh13+nd+bg="; + cargoHash = "sha256-zLTdpbBy+41tVEItSjkHCu+D3YKiBJqlpAPMpUt5+VM="; meta = with lib; { homepage = "https://docs.sentry.io/cli/"; diff --git a/pkgs/development/tools/skopeo/default.nix b/pkgs/development/tools/skopeo/default.nix index a875bacb36af1..7afeb6313946e 100644 --- a/pkgs/development/tools/skopeo/default.nix +++ b/pkgs/development/tools/skopeo/default.nix @@ -18,13 +18,13 @@ buildGoModule rec { pname = "skopeo"; - version = "1.14.0"; + version = "1.14.2"; src = fetchFromGitHub { rev = "v${version}"; owner = "containers"; repo = "skopeo"; - hash = "sha256-6PSxYM6u727vHf4FP0ju0TAuqj4R4bxQEdyZHvC4qBA="; + hash = "sha256-js1Y7EGXinzOMMX9LjsG6D57UhGtZcvesOw/JDEKvoU="; }; outputs = [ "out" "man" ]; diff --git a/pkgs/development/tools/snazy/default.nix b/pkgs/development/tools/snazy/default.nix index a0cf2c7c97d84..7abe2fd98cfc3 100644 --- a/pkgs/development/tools/snazy/default.nix +++ b/pkgs/development/tools/snazy/default.nix @@ -6,16 +6,16 @@ rustPlatform.buildRustPackage rec { pname = "snazy"; - version = "0.52.1"; + version = "0.52.17"; src = fetchFromGitHub { owner = "chmouel"; repo = pname; rev = version; - hash = "sha256-OoUu42vRe4wPaunb2vJ9ITd0Q76pBI/yC8FI0J+J+ts="; + hash = "sha256-0r5xhmU9a9I+q24mjJ+C4EKK1Nw/67YThuBFibAx3Dw="; }; - cargoHash = "sha256-gUeKZNSo/zJ4Nqy4Fpk5JuvFylGBlKJu+Nw9XWXVx0g="; + cargoHash = "sha256-ljYsF5lBRqiTqx9nta5h/75052GWOBJ9uJnqZkWJvwI="; nativeBuildInputs = [ installShellFiles ]; diff --git a/pkgs/development/tools/spirv-tools/default.nix b/pkgs/development/tools/spirv-tools/default.nix index 8827d6b709e7b..648b2615166c1 100644 --- a/pkgs/development/tools/spirv-tools/default.nix +++ b/pkgs/development/tools/spirv-tools/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "spirv-tools"; - version = "1.3.268.0"; + version = "1.3.275.0"; src = fetchFromGitHub { owner = "KhronosGroup"; repo = "SPIRV-Tools"; rev = "vulkan-sdk-${version}"; - hash = "sha256-Bned5Pa6zCFByfNvqD0M5t3l4uAJYkDlpe6wu8e7a3U="; + hash = "sha256-RzGvoDt1Qc+f6mZsfs99MxX4YB3yFc5FP92Yx/WGrsI="; }; # The cmake options are sufficient for turning on static building, but not diff --git a/pkgs/development/tools/spring-boot-cli/default.nix b/pkgs/development/tools/spring-boot-cli/default.nix index fe4780176a674..5e92ac17f7bc6 100644 --- a/pkgs/development/tools/spring-boot-cli/default.nix +++ b/pkgs/development/tools/spring-boot-cli/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation (finalAttrs: { pname = "spring-boot-cli"; - version = "3.2.0"; + version = "3.2.2"; src = fetchzip { url = "mirror://maven/org/springframework/boot/${finalAttrs.pname}/${finalAttrs.version}/${finalAttrs.pname}-${finalAttrs.version}-bin.zip"; - hash = "sha256-C9hWIH6lFDa9dzH5iYZlawt+7SSPt3gxcXM62qd0zbo="; + hash = "sha256-Jlczhy4Nfquhrm+SO/MRfBsHrHRHDkU4TUTTPTH7aVk="; }; nativeBuildInputs = [ makeWrapper installShellFiles ]; diff --git a/pkgs/development/tools/sqlboiler/default.nix b/pkgs/development/tools/sqlboiler/default.nix index 432582dbc46e6..eccb479aa5a4c 100644 --- a/pkgs/development/tools/sqlboiler/default.nix +++ b/pkgs/development/tools/sqlboiler/default.nix @@ -5,16 +5,16 @@ buildGoModule rec { pname = "sqlboiler"; - version = "4.15.0"; + version = "4.16.1"; src = fetchFromGitHub { owner = "volatiletech"; repo = "sqlboiler"; rev = "refs/tags/v${version}"; - hash = "sha256-MT1tjVCDaFB9HfjlGGnf6jTiPdKcrDamgp2nTpIarqY="; + hash = "sha256-MmZ2TZZ06eiz05bkEm6E8tmGRVkInBZJGHbuPN4fMMY="; }; - vendorHash = "sha256-tZ1RQGmeDv4rtdF1WTRQV1K4Xy1AgIatLPPexnHJnkA="; + vendorHash = "sha256-BTrQPWThfJ7gWXi/Y1l/s2BmkW5lVYS/PP0WRwntQxA="; tags = [ "mysql" diff --git a/pkgs/development/tools/stylua/default.nix b/pkgs/development/tools/stylua/default.nix index 23fac8ddac714..de4a20ee36fec 100644 --- a/pkgs/development/tools/stylua/default.nix +++ b/pkgs/development/tools/stylua/default.nix @@ -7,16 +7,16 @@ rustPlatform.buildRustPackage rec { pname = "stylua"; - version = "0.19.1"; + version = "0.20.0"; src = fetchFromGitHub { owner = "johnnymorganz"; repo = pname; rev = "v${version}"; - sha256 = "sha256-Bw9+BUvZC4sRLFyU5K6FHsWVZ3PTlMAonRmTSwV5AwU="; + sha256 = "sha256-bqUmLtJLjImWqe06CeIWIU4FP+/Vxszp2yKMosVeyZM="; }; - cargoSha256 = "sha256-bainEM4eRMNyecSBi5k1ifjDULWdXed6GP6i10IVA+w="; + cargoHash = "sha256-EMHt9oskPJCeAu/5VG6PaMt/4NTmNOaFTM5TMOy0BV8="; # remove cargo config so it can find the linker on aarch64-unknown-linux-gnu postPatch = '' diff --git a/pkgs/development/tools/subxt/default.nix b/pkgs/development/tools/subxt/default.nix index 9e95b71256613..fd557c96b04f9 100644 --- a/pkgs/development/tools/subxt/default.nix +++ b/pkgs/development/tools/subxt/default.nix @@ -8,16 +8,16 @@ rustPlatform.buildRustPackage rec { pname = "subxt"; - version = "0.33.0"; + version = "0.34.0"; src = fetchFromGitHub { owner = "paritytech"; repo = "subxt"; rev = "v${version}"; - hash = "sha256-ZTBWGNbCwe6GyGXk/8QBGLiAp4ZO7VZuJvtZicJsvgA="; + hash = "sha256-1SkAYJ6YdZeaD3c1pekd/nwTEI9Zt/2fmA3Y7PPLxoE="; }; - cargoHash = "sha256-FBtwmItzT5uFsKCx36POrYk5qDmlX9Nkx0E3hx17HqI="; + cargoHash = "sha256-a3LPvPCQklmrtC9XpxARgYeL4bmj2vFsLbiRGjNUGio="; # Only build the command line client cargoBuildFlags = [ "--bin" "subxt" ]; diff --git a/pkgs/development/tools/supabase-cli/default.nix b/pkgs/development/tools/supabase-cli/default.nix index 3d80a27d59adf..ed4cb8b8fe5d3 100644 --- a/pkgs/development/tools/supabase-cli/default.nix +++ b/pkgs/development/tools/supabase-cli/default.nix @@ -9,16 +9,16 @@ buildGoModule rec { pname = "supabase-cli"; - version = "1.131.2"; + version = "1.141.0"; src = fetchFromGitHub { owner = "supabase"; repo = "cli"; rev = "v${version}"; - hash = "sha256-6IjVROKxDiLod8XWWndnxHQGnk8DJc1sjzJxLWDkRL0="; + hash = "sha256-LyArcez2x2aGb8rH9IQX7E8HMyhpfjzBlwdLs15lKD8="; }; - vendorHash = "sha256-/hfFydNHDK6shCC4iIkdP8r1ZO9niMIWZ/Ypj/DGj+c="; + vendorHash = "sha256-WKfR1HzgghuOF4brNiAAfOul0q4reg3YRxI3AzyOdFM="; ldflags = [ "-s" diff --git a/pkgs/development/tools/symfony-cli/default.nix b/pkgs/development/tools/symfony-cli/default.nix index 11e4c8e3db3c5..453b962426389 100644 --- a/pkgs/development/tools/symfony-cli/default.nix +++ b/pkgs/development/tools/symfony-cli/default.nix @@ -10,14 +10,14 @@ buildGoModule rec { pname = "symfony-cli"; - version = "5.8.1"; - vendorHash = "sha256-bscRqFYV2qzTmu04l00/iMsFQR5ITPBFVr9BQwVGFU8="; + version = "5.8.6"; + vendorHash = "sha256-ACK0JCaS1MOCgUi2DMEjIcKf/nMCcrdDyIdioBZv7qw="; src = fetchFromGitHub { owner = "symfony-cli"; repo = "symfony-cli"; rev = "v${version}"; - hash = "sha256-GJPUYza1LhWZP9U3JKoe3i0npLgypo3DkKex9DFo1U4="; + hash = "sha256-lZ4jPmqPGyWp8xS156XXl6s4ZfNbU4M5xJy25nRL1Bs="; }; ldflags = [ diff --git a/pkgs/development/tools/templ/default.nix b/pkgs/development/tools/templ/default.nix index 76a006654fb25..ef54d183e48bf 100644 --- a/pkgs/development/tools/templ/default.nix +++ b/pkgs/development/tools/templ/default.nix @@ -5,7 +5,7 @@ buildGoModule rec { pname = "templ"; - version = "0.2.513"; + version = "0.2.543"; subPackages = [ "cmd/templ" ]; @@ -21,10 +21,10 @@ buildGoModule rec { owner = "a-h"; repo = "templ"; rev = "refs/tags/v${version}"; - hash = "sha256-LWvwtAX1KBK33FIyY6alkG0RBXL6Ce4fR0cklQfwaRk="; + hash = "sha256-A99GBzxmrAhjPzo5qj6V3YWkQJavs9j9beMtNYqGnqo="; }; - vendorHash = "sha256-buJArvaaKGRg3yS7BdcVY0ydyi4zah57ABeo+CHkZQU="; + vendorHash = "sha256-4tHofTnSNI/MBmrGdGsLNoXjxUC0+Gwp3PzzUwfUkQU="; meta = with lib; { description = "A language for writing HTML user interfaces in Go"; diff --git a/pkgs/development/tools/the-way/default.nix b/pkgs/development/tools/the-way/default.nix index a161728657ac2..9418afb6cfa6d 100644 --- a/pkgs/development/tools/the-way/default.nix +++ b/pkgs/development/tools/the-way/default.nix @@ -2,14 +2,14 @@ rustPlatform.buildRustPackage rec { pname = "the-way"; - version = "0.20.2"; + version = "0.20.3"; src = fetchCrate { inherit pname version; - sha256 = "sha256-jUo46NHjgSFOV7fsqh9Ki0QtTGfoaPjQ87/a66zBz1Q="; + sha256 = "sha256-/vG5LkQiA8iPP+UV1opLeJwbYfmzqYwpsoMizpGT98o="; }; - cargoHash = "sha256-nmVsg8LX3di7ZAvvDuPQ3PXlLjs+L6YFTzwXRAkcxig="; + cargoHash = "sha256-iZxV099582LuZ8A3uOsKPyekAQG2cQusLZhW+W1wW/8="; nativeBuildInputs = [ installShellFiles ]; diff --git a/pkgs/development/tools/trunk-io/default.nix b/pkgs/development/tools/trunk-io/default.nix index 78b5247a49113..0428b84895478 100644 --- a/pkgs/development/tools/trunk-io/default.nix +++ b/pkgs/development/tools/trunk-io/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation (finalAttrs: { pname = "trunk-io"; - version = "1.2.7"; + version = "1.3.0"; src = fetchurl { url = "https://trunk.io/releases/launcher/${finalAttrs.version}/trunk"; - hash = "sha256-i2m+6Y6gvkHYwzESJv0DkLcHkXqz+g4e43TV6u1UTj8="; + hash = "sha256-v9WJb9oIs5k2ZIX80L83dRtEarTiVsXBtXBta0sP++A="; }; dontUnpack = true; diff --git a/pkgs/development/tools/trunk/default.nix b/pkgs/development/tools/trunk/default.nix index 1c933c6179c45..e7b06a18b3c14 100644 --- a/pkgs/development/tools/trunk/default.nix +++ b/pkgs/development/tools/trunk/default.nix @@ -12,13 +12,13 @@ SystemConfiguration rustPlatform.buildRustPackage rec { pname = "trunk"; - version = "0.18.3"; + version = "0.18.7"; src = fetchFromGitHub { owner = "thedodd"; repo = "trunk"; rev = "v${version}"; - hash = "sha256-R7i2tY8wd7Jhyx+zs+OqkZ+K+d/triBRqaAsATtCM+o="; + hash = "sha256-TNF1J/hQ/b89Qo5gkYkYNZ9EQ/21n2YD0fA8cLQic5g="; }; nativeBuildInputs = [ pkg-config ]; @@ -28,7 +28,7 @@ rustPlatform.buildRustPackage rec { # requires network checkFlags = [ "--skip=tools::tests::download_and_install_binaries" ]; - cargoHash = "sha256-70fzBqF/6bDStvhpc7IV4ekVEinBFqiCScK4X0HTkgY="; + cargoHash = "sha256-kqOaqhxBWcduu3Y1ShI7wko10dubJOs3W4FRZMaRNkc="; # the dependency css-minify contains both README.md and Readme.md, # which causes a hash mismatch on systems with a case-insensitive filesystem diff --git a/pkgs/development/tools/ttfb/default.nix b/pkgs/development/tools/ttfb/default.nix index 550a8f1a87621..f024280c08702 100644 --- a/pkgs/development/tools/ttfb/default.nix +++ b/pkgs/development/tools/ttfb/default.nix @@ -1,40 +1,35 @@ { darwin , fetchCrate , lib -, openssl -, pkg-config , rustPlatform , stdenv }: rustPlatform.buildRustPackage rec { pname = "ttfb"; - version = "1.7.0"; + version = "1.10.0"; src = fetchCrate { inherit pname version; - hash = "sha256-GxjG8pyE2rY0h1dpAo+HRUbP31I5Pm4h1fAb6R7V+qU="; + hash = "sha256-94gBofb7H7+qU50+cp+rq14Vtbk2vuXFQksNITvICm4="; }; - cargoHash = "sha256-YdbVtVKt0bKb1R5IQxf9J/0ZA3ZHH+oZ8ryX6f4cGsY="; + buildInputs = lib.optionals stdenv.isDarwin [ + darwin.apple_sdk.frameworks.Security + ]; + + cargoHash = "sha256-CUisxtUQXkStqSZikIoAN0GwpUjvQqon7KqI0beHL5U="; # The bin feature activates all dependencies of the binary. Otherwise, # only the library is build. buildFeatures = [ "bin" ]; - nativeBuildInputs = [ pkg-config ]; - - buildInputs = [ - openssl - ] ++ lib.optionals stdenv.isDarwin [ - darwin.apple_sdk.frameworks.Security - ]; - meta = { description = "CLI-Tool to measure the TTFB (time to first byte) of HTTP(S) requests"; longDescription = '' - This crate measures the times of DNS lookup, TCP connect, TLS handshake, and HTTP's TTFB - for a given IP or domain. + ttfb measure the TTFB (time to first byte) of HTTP(S) requests. This includes data + of intermediate steps, such as the relative and absolute timings of DNS lookup, TCP + connect, and TLS handshake. ''; homepage = "https://github.com/phip1611/ttfb"; changelog = "https://github.com/phip1611/ttfb/blob/v${version}/CHANGELOG.md"; diff --git a/pkgs/development/tools/turso-cli/default.nix b/pkgs/development/tools/turso-cli/default.nix index 1aacba1646b85..09f96c2d183ad 100644 --- a/pkgs/development/tools/turso-cli/default.nix +++ b/pkgs/development/tools/turso-cli/default.nix @@ -1,20 +1,20 @@ { lib, stdenv, - buildGo121Module, + buildGoModule, fetchFromGitHub, installShellFiles, nix-update-script, }: -buildGo121Module rec { +buildGoModule rec { pname = "turso-cli"; - version = "0.87.8"; + version = "0.88.3"; src = fetchFromGitHub { owner = "tursodatabase"; repo = "turso-cli"; rev = "v${version}"; - hash = "sha256-7JdWAMMNOBRWx2sU8mQ2kLZBVDsXaVszlOQos2Ybiy4="; + hash = "sha256-tPeoLGYJRMXFVI09fupspdQMSMjF2Trdo2GlkoWs7wA="; }; vendorHash = "sha256-rTeW2RQhcdwJTAMQELm4cdObJbm8gk/I2Qz3Wk3+zpI="; diff --git a/pkgs/development/tools/twilio-cli/default.nix b/pkgs/development/tools/twilio-cli/default.nix index c7711151863e6..36d2f2dccc679 100644 --- a/pkgs/development/tools/twilio-cli/default.nix +++ b/pkgs/development/tools/twilio-cli/default.nix @@ -2,11 +2,11 @@ stdenvNoCC.mkDerivation (finalAttrs: { pname = "twilio-cli"; - version = "5.17.0"; + version = "5.17.1"; src = fetchzip { url = "https://twilio-cli-prod.s3.amazonaws.com/twilio-v${finalAttrs.version}/twilio-v${finalAttrs.version}.tar.gz"; - hash = "sha256-7BJ/9dqEKBjH89XDyIonRbfCn8cyjvgtV2PwdzGIUro="; + hash = "sha256-wgZdivfFjkX3bMmBLWY5vy32pXE7CqEkRGQqIhJrcdE="; }; buildInputs = [ nodejs-slim ]; diff --git a/pkgs/development/tools/uftrace/default.nix b/pkgs/development/tools/uftrace/default.nix index 128de43a9706e..26bb1cf60e007 100644 --- a/pkgs/development/tools/uftrace/default.nix +++ b/pkgs/development/tools/uftrace/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "uftrace"; - version = "0.15"; + version = "0.15.2"; src = fetchFromGitHub { owner = "namhyung"; repo = "uftrace"; rev = "v${version}"; - sha256 = "sha256-VK2lERzwsdXVOxgxRAA2RxeqBtOeINJDnsafnn461VQ="; + sha256 = "sha256-FfTt1S7X7FakKXWbmJJ1HMYcu/tG/UFknz8XmEPbPUo="; }; postUnpack = '' diff --git a/pkgs/development/tools/upbound/default.nix b/pkgs/development/tools/upbound/default.nix index c4b2a421b4310..cfb667d55842e 100644 --- a/pkgs/development/tools/upbound/default.nix +++ b/pkgs/development/tools/upbound/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "upbound"; - version = "0.21.0"; + version = "0.24.0"; src = fetchFromGitHub { owner = pname; repo = "up"; rev = "v${version}"; - sha256 = "sha256-SvnmdpsdXbPSC+4inoMvu55az33Zucqf4c3yQ0g6EMw="; + sha256 = "sha256-AtaO4O9UbA44OnZl5ARQkyPHoBYnuwdFd91DEZPN+Co="; }; - vendorHash = "sha256-ai+Mro/ooUElJJq8BbnCo9PupIAwlanDeh+oe5otJJ4="; + vendorHash = "sha256-jHVwI5fQbS/FhRptRXtNezG1djaZKHJgpPJfuEH/zO0="; subPackages = [ "cmd/docker-credential-up" "cmd/up" ]; diff --git a/pkgs/development/tools/vendir/default.nix b/pkgs/development/tools/vendir/default.nix index bc0edbccf9ac4..62f30354e68b8 100644 --- a/pkgs/development/tools/vendir/default.nix +++ b/pkgs/development/tools/vendir/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "vendir"; - version = "0.38.0"; + version = "0.39.0"; src = fetchFromGitHub { owner = "vmware-tanzu"; repo = "carvel-vendir"; rev = "v${version}"; - sha256 = "sha256-H5SeDZzl2KdVp3KsRpsmp6/ZOxLq+3y9Coe1NIEi5YQ="; + sha256 = "sha256-m8dxYq3RcfWFBxja2E3MUqYAl1CYpkrBWPeMIC/7Sgg="; }; vendorHash = null; diff --git a/pkgs/development/tools/vsce/default.nix b/pkgs/development/tools/vsce/default.nix index 911ee57a6932c..5ba007818e3b4 100644 --- a/pkgs/development/tools/vsce/default.nix +++ b/pkgs/development/tools/vsce/default.nix @@ -12,16 +12,16 @@ buildNpmPackage rec { pname = "vsce"; - version = "2.22.0"; + version = "2.23.0"; src = fetchFromGitHub { owner = "microsoft"; repo = "vscode-vsce"; rev = "v${version}"; - hash = "sha256-zpZ/PsqZ9yRDKTXkSrcBgSxYer7JdjNZqsseHwfzkEY="; + hash = "sha256-2s8hG3HNDQnuwFXZX1mCTSbKCm4n7YAzhHDaWVYTyys="; }; - npmDepsHash = "sha256-Difk9a9TYmfwzP9SawEuaxm7iHVjdfO+FxFCE7aEMzM="; + npmDepsHash = "sha256-1PVUDEecFW+lFmZOZUTlgeKsLwLK9O4vFHi6gOLjBfo="; postPatch = '' substituteInPlace package.json --replace '"version": "0.0.0"' '"version": "${version}"' @@ -44,5 +44,6 @@ buildNpmPackage rec { description = "Visual Studio Code Extension Manager"; maintainers = with maintainers; [ aaronjheng ]; license = licenses.mit; + mainProgram = "vsce"; }; } diff --git a/pkgs/development/tools/vulkan-validation-layers/default.nix b/pkgs/development/tools/vulkan-validation-layers/default.nix index 09a11cef84f4e..1d0a39fb2b8bd 100644 --- a/pkgs/development/tools/vulkan-validation-layers/default.nix +++ b/pkgs/development/tools/vulkan-validation-layers/default.nix @@ -23,13 +23,13 @@ let in stdenv.mkDerivation rec { pname = "vulkan-validation-layers"; - version = "1.3.268.0"; + version = "1.3.275.0"; src = fetchFromGitHub { owner = "KhronosGroup"; repo = "Vulkan-ValidationLayers"; rev = "vulkan-sdk-${version}"; - hash = "sha256-DwkSUclStYKe54tC1H3jMv1KOSScgqf25tR5ajQZ6os="; + hash = "sha256-hJx8gn0zCN3+DhO6niylZJXPHgQ+VhQV5tL8qAeRaUg="; }; nativeBuildInputs = [ diff --git a/pkgs/development/tools/vultr-cli/default.nix b/pkgs/development/tools/vultr-cli/default.nix index 0cd9c6acd05f9..e3be6f0366fdc 100644 --- a/pkgs/development/tools/vultr-cli/default.nix +++ b/pkgs/development/tools/vultr-cli/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "vultr-cli"; - version = "2.21.0"; + version = "2.22.0"; src = fetchFromGitHub { owner = "vultr"; repo = pname; rev = "v${version}"; - hash = "sha256-sIxAl4mI29RfJbGk/pvCSxUva8O9sXcwEIWBfY+h72Q="; + hash = "sha256-DdiMrmvLa2ZaZen//+Qz4UxZwvn8DNgH9mYp/Q8Z4Uw="; }; - vendorHash = "sha256-d4EK9SLmIyt/N+29a7p7nxHkX0m0pAOMH7+G1tLbJGk="; + vendorHash = "sha256-3sXqpeOZSiysZYOv15c+ZkMZOwqy3UCkvBEB1szaWFA="; nativeBuildInputs = [ installShellFiles ]; diff --git a/pkgs/development/tools/web-ext/default.nix b/pkgs/development/tools/web-ext/default.nix index da414797c2bc3..bb9cda866e7f2 100644 --- a/pkgs/development/tools/web-ext/default.nix +++ b/pkgs/development/tools/web-ext/default.nix @@ -7,16 +7,16 @@ buildNpmPackage rec { pname = "web-ext"; - version = "7.10.0"; + version = "7.11.0"; src = fetchFromGitHub { owner = "mozilla"; repo = "web-ext"; rev = version; - hash = "sha256-VXvs4Z5cOt+lJ1JReApynpz/TufJgIVaO3dszS3Gvb4="; + hash = "sha256-tXYqAAzxAFQGREkNGgBrHLp7ukRDMtr0bPYW7hOEniY="; }; - npmDepsHash = "sha256-ovLVWOrQ//aJPJqzCJQS+/Tnn4Z75OR69e7ACevKWCA="; + npmDepsHash = "sha256-uKAEWe28zUgE7Fv00sGXD5dKje/pHh22yJlYtk+7tN8="; npmBuildFlags = [ "--production" ]; diff --git a/pkgs/development/tools/wlcs/default.nix b/pkgs/development/tools/wlcs/default.nix index 7f573d1566d7a..d6fce69b43186 100644 --- a/pkgs/development/tools/wlcs/default.nix +++ b/pkgs/development/tools/wlcs/default.nix @@ -13,13 +13,13 @@ stdenv.mkDerivation (finalAttrs: { pname = "wlcs"; - version = "1.6.1"; + version = "1.7.0"; src = fetchFromGitHub { owner = "MirServer"; repo = "wlcs"; rev = "v${finalAttrs.version}"; - hash = "sha256-YYrhcN1BSJISn/7lxu7Db5YaOK+okdHVJuMwqSDzAIU="; + hash = "sha256-BQPRymkbGu4YvTYXTaTMuyP5fHpqMWI4xPwjDRHZNEQ="; }; strictDeps = true; diff --git a/pkgs/development/tools/xc/default.nix b/pkgs/development/tools/xc/default.nix index 441c995517f62..0e09b77e453e2 100644 --- a/pkgs/development/tools/xc/default.nix +++ b/pkgs/development/tools/xc/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "xc"; - version = "0.7.0"; + version = "0.8.0"; src = fetchFromGitHub { owner = "joerdav"; repo = pname; rev = "v${version}"; - sha256 = "sha256-ndaffdU+DYuILZzAwsjLTNWFWbq7CrTcAYBA0j3T3gA="; + sha256 = "sha256-vTyCS85xbJnAgbasWD6LFxij9EezzlJ1pyvCJptqmOU="; }; - vendorHash = "sha256-AwlXX79L69dv6wbFtlbHAeZRuOeDy/r6KSiWwjoIgWw="; + vendorHash = "sha256-EbIuktQ2rExa2DawyCamTrKRC1yXXMleRB8/pcKFY5c="; ldflags = [ "-s" diff --git a/pkgs/development/tools/yj/default.nix b/pkgs/development/tools/yj/default.nix deleted file mode 100644 index 150278c0ac4d8..0000000000000 --- a/pkgs/development/tools/yj/default.nix +++ /dev/null @@ -1,24 +0,0 @@ -{ lib, buildGoModule, fetchFromGitHub }: - -buildGoModule rec { - pname = "yj"; - version = "5.1.0"; - - src = fetchFromGitHub { - owner = "sclevine"; - repo = "yj"; - rev = "v${version}"; - hash = "sha256-lsn5lxtix5W7po6nzvGcHmifbyhrtHgvaKYT7RPPCOg="; - }; - - vendorHash = "sha256-NeSOoL9wtFzq6ba8ghseB6D+Qq8Z5holQExcAUbtYrs="; - - ldflags = [ "-s" "-w" "-X main.Version=${version}" ]; - - meta = with lib; { - description = "Convert YAML <=> TOML <=> JSON <=> HCL"; - license = licenses.asl20; - maintainers = with maintainers; [ Profpatsch ]; - homepage = "https://github.com/sclevine/yj"; - }; -} diff --git a/pkgs/development/tools/ytt/default.nix b/pkgs/development/tools/ytt/default.nix index 1df8887afe68f..fc050ab9c9b66 100644 --- a/pkgs/development/tools/ytt/default.nix +++ b/pkgs/development/tools/ytt/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "ytt"; - version = "0.46.3"; + version = "0.47.0"; src = fetchFromGitHub { owner = "vmware-tanzu"; repo = "carvel-ytt"; rev = "v${version}"; - sha256 = "sha256-K2+5NplyQuvc78NnNDiQhfrewqn84jDbiAyN8J9iTm0="; + sha256 = "sha256-aoKgXagCygK4pzRHw5Nf8LCzpzZd2X77th9tJA5f1aA="; }; vendorHash = null; diff --git a/pkgs/development/tools/zed/default.nix b/pkgs/development/tools/zed/default.nix index 68a84d53a5022..6164b6d4c6247 100644 --- a/pkgs/development/tools/zed/default.nix +++ b/pkgs/development/tools/zed/default.nix @@ -7,16 +7,16 @@ buildGoModule rec { pname = "zed"; - version = "1.12.0"; + version = "1.13.0"; src = fetchFromGitHub { owner = "brimdata"; repo = pname; rev = "v${version}"; - sha256 = "sha256-mBJmAV7ax4F61gP8yeiJj/EQyJi3zaex6jT/CKzR3LU="; + sha256 = "sha256-xyTHCBvklK8x6V7WsWDYytnVEfLcja78crvs62WJJ9o="; }; - vendorHash = "sha256-BWvMy1dc3PzAc3kDTXtI6Y8kjRGLWR+aUleItg5EgRU="; + vendorHash = "sha256-m8GOKBwXlNhjEIkkbaIOAGslX4WRVPZ0OknGEG29b4E="; subPackages = [ "cmd/zed" "cmd/zq" ]; diff --git a/pkgs/development/web/bootstrap-studio/default.nix b/pkgs/development/web/bootstrap-studio/default.nix index 796095e109a51..757b9e8c206c8 100644 --- a/pkgs/development/web/bootstrap-studio/default.nix +++ b/pkgs/development/web/bootstrap-studio/default.nix @@ -2,10 +2,10 @@ let pname = "bootstrap-studio"; - version = "6.5.1"; + version = "6.6.1"; src = fetchurl { url = "https://releases.bootstrapstudio.io/${version}/Bootstrap%20Studio.AppImage"; - sha256 = "sha256-mx9KkMwFzdjhzofr+4l7MTerGfSSsI8+z8jmaoV8uvo="; + sha256 = "sha256-mMhjdAJfiDoK4b8TfawzxZHyQG2MUJHpG45MhuaCPqs="; }; appimageContents = appimageTools.extractType2 { inherit pname version src; }; in diff --git a/pkgs/development/web/bun/default.nix b/pkgs/development/web/bun/default.nix index ed516df42c3ce..c4779f96f5ea2 100644 --- a/pkgs/development/web/bun/default.nix +++ b/pkgs/development/web/bun/default.nix @@ -12,7 +12,7 @@ }: stdenvNoCC.mkDerivation rec { - version = "1.0.22"; + version = "1.0.26"; pname = "bun"; src = passthru.sources.${stdenvNoCC.hostPlatform.system} or (throw "Unsupported system: ${stdenvNoCC.hostPlatform.system}"); @@ -51,19 +51,19 @@ stdenvNoCC.mkDerivation rec { sources = { "aarch64-darwin" = fetchurl { url = "https://github.com/oven-sh/bun/releases/download/bun-v${version}/bun-darwin-aarch64.zip"; - hash = "sha256-DbpDJe7QfWa+QK31mqmWUxJ9O/CUhDHk2RILBo5d1+A="; + hash = "sha256-UEYA6q83fxD3yQuHsQiO9bQ5gptQSipFGjE5eGUb+1c="; }; "aarch64-linux" = fetchurl { url = "https://github.com/oven-sh/bun/releases/download/bun-v${version}/bun-linux-aarch64.zip"; - hash = "sha256-dROAnP6cTX4uteDdIXTFg/h+DX6IanRw2EuQgOev5xc="; + hash = "sha256-H+hmbZdRKjljskwNicLeFguo5STZ8fIxk7FHvOenuRc="; }; "x86_64-darwin" = fetchurl { url = "https://github.com/oven-sh/bun/releases/download/bun-v${version}/bun-darwin-x64.zip"; - hash = "sha256-ZkFXtiUFsR2XX97vYHXvGVm0FulInL0d+44TvUZA+0U="; + hash = "sha256-mlKspcFpeYXJuINYDvCoDEuNHJDMcDqngPNIBpD39T4="; }; "x86_64-linux" = fetchurl { url = "https://github.com/oven-sh/bun/releases/download/bun-v${version}/bun-linux-x64.zip"; - hash = "sha256-+TCpIiI1s84TxOq+5YPfETKqgPUxgkdZDeM5KNyoZfY="; + hash = "sha256-mWVe8BFGSXKJYnr2QXZah1XYfir5zN5+2wQ4HfgdOyE="; }; }; updateScript = writeShellScript "update-bun" '' @@ -94,5 +94,8 @@ stdenvNoCC.mkDerivation rec { ]; maintainers = with maintainers; [ DAlperin jk thilobillerbeck cdmistman coffeeispower ]; platforms = builtins.attrNames passthru.sources; + # Broken for Musl at 2024-01-13, tracking issue: + # https://github.com/NixOS/nixpkgs/issues/280716 + broken = stdenvNoCC.hostPlatform.isMusl; }; } diff --git a/pkgs/development/web/deno/default.nix b/pkgs/development/web/deno/default.nix index acc2a8c5c2dcb..bae30f873a0f1 100644 --- a/pkgs/development/web/deno/default.nix +++ b/pkgs/development/web/deno/default.nix @@ -13,16 +13,16 @@ rustPlatform.buildRustPackage rec { pname = "deno"; - version = "1.39.2"; + version = "1.40.2"; src = fetchFromGitHub { owner = "denoland"; repo = pname; rev = "v${version}"; - hash = "sha256-R5LF3PwH8LZeBM7biR+QLo5+MJ9KvM41fk5IHR7oAOs="; + hash = "sha256-ycQN4BKuvK4FRYbHUKFFMVFg0LAG64xFiXbAkmQ46Cs="; }; - cargoHash = "sha256-OPHQltS+3GZTIhMSg6ldLWy6L5skYzZxJLM06rLiDzs="; + cargoHash = "sha256-5OnYtVsuf6q4nQGO1+qL+2WFaKW0k13fNFS29gKaWhk="; postPatch = '' # upstream uses lld on aarch64-darwin for faster builds diff --git a/pkgs/development/web/deno/librusty_v8.nix b/pkgs/development/web/deno/librusty_v8.nix index 726a04dea4747..60ce4616c0140 100644 --- a/pkgs/development/web/deno/librusty_v8.nix +++ b/pkgs/development/web/deno/librusty_v8.nix @@ -10,11 +10,11 @@ let }; in fetch_librusty_v8 { - version = "0.82.0"; + version = "0.83.1"; shas = { - x86_64-linux = "sha256-2nWOAUuzc7tr0KieeugIqI3zaRruvnLWBPn+ZdHTXsM="; - aarch64-linux = "sha256-vlc60ZoFtT2Ugp0npT0dep6WWnEBAznR7dYFRaMNAKM="; - x86_64-darwin = "sha256-CqyG/JOJe5kWzFJnnkU2Lz4VS/unWe1iucFxm+1HGsU="; - aarch64-darwin = "sha256-ps19JZqCpO3pEAMQZOO+l/Iz7u0dIXLnpYIsnOyAxYk="; + x86_64-linux = "sha256-0cCpFMPpFWTvoU3+HThYDDTQO7DdpdVDDer5k+3HQFY="; + aarch64-linux = "sha256-fOyJiD0raHxl+5tDWSpH/MbdBUqNY+HCKmTulYLXEYI="; + x86_64-darwin = "sha256-JwZ1FrU/MZeEnvSPDojvDdDxIF/bdZBPRCXrjbBb7WM="; + aarch64-darwin = "sha256-ajmr+SGj3L8TT+17NPkNcwQFESpIZuUul12Pp1oJAkY="; }; } diff --git a/pkgs/development/web/flyctl/default.nix b/pkgs/development/web/flyctl/default.nix index 55e9a8aca38f7..1fffbb6cd8c84 100644 --- a/pkgs/development/web/flyctl/default.nix +++ b/pkgs/development/web/flyctl/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "flyctl"; - version = "0.1.137"; + version = "0.1.147"; src = fetchFromGitHub { owner = "superfly"; repo = "flyctl"; rev = "v${version}"; - hash = "sha256-JXrern3jDp9lc6HnsfTfjNDJ0mMaXDdYuhEAQ5mwmJo="; + hash = "sha256-lSDoviV2jI6jYAZyFt2SppmBzMamflisCizABrLXVw4="; }; - vendorHash = "sha256-nXd0YUIccUkHJSy11KY14IgN6t0ntDe9lg8VxUn5buE="; + vendorHash = "sha256-x4lP0oLsII/auhr3DqlY9Tp75V4b0D9QwcDmGLy0ii4="; subPackages = [ "." ]; diff --git a/pkgs/development/web/function-runner/default.nix b/pkgs/development/web/function-runner/default.nix index 7582800e25bd5..a3526a0c55844 100644 --- a/pkgs/development/web/function-runner/default.nix +++ b/pkgs/development/web/function-runner/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "function-runner"; - version = "4.1.0"; + version = "4.2.0"; src = fetchFromGitHub { owner = "Shopify"; repo = pname; rev = "v${version}"; - sha256 = "sha256-o+fsIBH/vONlb57m3+upKG2Gss6s7yBNATkbKtSHf/0="; + sha256 = "sha256-33UVo7mPD/o3Z/R5PFhosiSLFLLpJ0pHqUbKtX6THJE="; }; - cargoHash = "sha256-7ACi4orqpmWiaMYmOjICR6/d1kVySzaaCWIoUxqnhpI="; + cargoHash = "sha256-TNbGmqITCk1VKVuO46LxO+zjAG7Laguq7EAruuhJIxk="; meta = with lib; { description = "A CLI tool which allows you to run Wasm Functions intended for the Shopify Functions infrastructure"; diff --git a/pkgs/development/web/grails/default.nix b/pkgs/development/web/grails/default.nix index 9990cf4553a49..95660e2f3d60a 100644 --- a/pkgs/development/web/grails/default.nix +++ b/pkgs/development/web/grails/default.nix @@ -11,11 +11,11 @@ let in stdenv.mkDerivation rec { pname = "grails"; - version = "6.1.0"; + version = "6.1.2"; src = fetchurl { url = "https://github.com/grails/grails-core/releases/download/v${version}/grails-${version}.zip"; - sha256 = "sha256-v+AAIDWRAgBXmhX2BecEio4s5dVA77K+YycZY1k9uvg="; + sha256 = "sha256-PoiXZuAJbKsyBRVaxwsKSDh1BzPYlgAwe/xC0qfeDgs="; }; nativeBuildInputs = [ unzip ]; diff --git a/pkgs/development/web/minify/default.nix b/pkgs/development/web/minify/default.nix index bc8c9d9ff0d05..232f6dffaaa63 100644 --- a/pkgs/development/web/minify/default.nix +++ b/pkgs/development/web/minify/default.nix @@ -9,16 +9,16 @@ buildGoModule rec { pname = "minify"; - version = "2.20.10"; + version = "2.20.16"; src = fetchFromGitHub { owner = "tdewolff"; repo = pname; rev = "v${version}"; - hash = "sha256-HNb9Sf1do2VfqpXTW+EqizkOV4kcJz9ySAaji66xkAE="; + hash = "sha256-0RiSNRoRmN7X2udwgGaArXgIRTaxaGH4fo3usiCJNbA="; }; - vendorHash = "sha256-SGjwRLzXnIr5EduPPJRgt+WSkgq0kxOAANH7cW03tBs="; + vendorHash = "sha256-8OEF2sAJZuGX4z/OsXCAkRR82JO3rYCEJQbidIjGOJ8="; nativeBuildInputs = [ installShellFiles ]; diff --git a/pkgs/development/web/nodejs/v20.nix b/pkgs/development/web/nodejs/v20.nix index 5868c5d9a990b..d1a75dcdf7e5c 100644 --- a/pkgs/development/web/nodejs/v20.nix +++ b/pkgs/development/web/nodejs/v20.nix @@ -8,8 +8,8 @@ let in buildNodejs { inherit enableNpm; - version = "20.10.0"; - sha256 = "sha256-MuslbuvYys1VdOZjHlS0K+fsjr4lrUeoymhUA7rRVTU="; + version = "20.11.0"; + sha256 = "sha256-MYB+vu6wScU/F2XkqVrtaUdqS2lt0QDLU5q2aNeVC0A="; patches = [ ./revert-arm64-pointer-auth.patch ./disable-darwin-v8-system-instrumentation-node19.patch diff --git a/pkgs/development/web/nodejs/v21.nix b/pkgs/development/web/nodejs/v21.nix index 631307f52b4b9..1a34a5c9cc755 100644 --- a/pkgs/development/web/nodejs/v21.nix +++ b/pkgs/development/web/nodejs/v21.nix @@ -8,10 +8,9 @@ let in buildNodejs { inherit enableNpm; - version = "21.5.0"; - sha256 = "sha256-r9fUcTVzzYFPfk3zIN6NXI4Ue0EBvJ+74qbVLrX4sHI="; + version = "21.6.1"; + sha256 = "sha256-eoLzVtHcul12bw4dTHUOLhjWKQtxC30ZqHJSQeevH2A="; patches = [ - ./revert-arm64-pointer-auth.patch ./disable-darwin-v8-system-instrumentation-node19.patch ./bypass-darwin-xcrun-node16.patch ./node-npm-build-npm-package-logic.patch diff --git a/pkgs/development/web/protege-distribution/default.nix b/pkgs/development/web/protege-distribution/default.nix index 3051c80f473ba..b82f45692ee15 100644 --- a/pkgs/development/web/protege-distribution/default.nix +++ b/pkgs/development/web/protege-distribution/default.nix @@ -78,5 +78,6 @@ stdenv.mkDerivation rec { maintainers = with maintainers; [ nessdoor ]; license = with licenses; [ asl20 bsd2 epl10 lgpl3 ]; platforms = platforms.linux; + mainProgram = "run-protege"; }; } diff --git a/pkgs/development/web/publii/default.nix b/pkgs/development/web/publii/default.nix index 0a87fffbdd1d0..5c5d776516eea 100644 --- a/pkgs/development/web/publii/default.nix +++ b/pkgs/development/web/publii/default.nix @@ -25,11 +25,11 @@ stdenv.mkDerivation rec { pname = "publii"; - version = "0.44.2"; + version = "0.44.4"; src = fetchurl { url = "https://getpublii.com/download/Publii-${version}.deb"; - hash = "sha256-L54Aa/LiGtOEZ/ks62KckOnH042TfprOl+35AE1FwTM="; + hash = "sha256-Qk7Ix8VLfrgT4VbSIQFwB5oVfjgeSi8nttQWovptliw="; }; dontConfigure = true; |