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2021-02-20treewide: add targetPrefix to hardcoded references to CC=ccBen Siraphob2-2/+2
2021-02-13Merge master into staging-nextgithub-actions[bot]1-2/+2
2021-02-11picard-tools: 2.24.2 -> 2.25.0R. RyanTM1-2/+2
2021-02-09Merge master into staging-nextgithub-actions[bot]1-2/+2
2021-02-08Merge pull request #112191 from r-ryantm/auto-update/starMario Rodas1-2/+2
2021-02-08Merge master into staging-nextgithub-actions[bot]1-2/+2
2021-02-07Merge pull request #112021 from r-ryantm/auto-update/picard-toolsRyan Mulligan1-2/+2
2021-02-07Merge master into staging-nextgithub-actions[bot]2-11/+6
2021-02-06star: 2.7.6a -> 2.7.7aR. RyanTM1-2/+2
2021-02-06blast: 2.10.0 -> 2.11.0Orivej Desh2-11/+6
2021-02-05picard-tools: 2.24.1 -> 2.24.2R. RyanTM1-2/+2
2021-01-30last: 1170 -> 1178R. RyanTM1-2/+2
2021-01-26sortmerna: mark broken on darwinPhillip Cloud1-0/+1
2021-01-25treewide: remove stdenv where not neededPavol Rusnak4-4/+4
2021-01-25Merge pull request #110735 from jbedo/bedtoolsSandro1-2/+2
2021-01-24Merge pull request #110529 from r-ryantm/auto-update/picard-toolsRyan Mulligan1-2/+2
2021-01-25bedtools: 2.29.2 -> 2.30.0Justin Bedo1-2/+2
2021-01-24treewide: fix double quoted strings in meta.descriptionvolth3-4/+4
2021-01-24treewide: stdenv.lib -> libPavol Rusnak1-2/+2
2021-01-23mpi: use mpi attribute consistently as the default MPI implementationsMarkus Kowalewski3-11/+12
2021-01-22picard-tools: 2.24.0 -> 2.24.1R. RyanTM1-2/+2
2021-01-21treewide: editorconfig fixeszowoq2-6/+6
2021-01-20picard-tools: 2.23.9 -> 2.24.0R. RyanTM1-2/+2
2021-01-20ecopcr: use spaces for indentationzowoq1-6/+6
2021-01-20treewide: editorconfig fixeszowoq2-2/+2
2021-01-19treewide: pkgs.pkgconfig -> pkgs.pkg-config, move pkgconfig to alias.nixJonathan Ringer5-10/+10
2021-01-19cd-hit: remove non-existent packageJonathan Ringer1-1/+1
2021-01-18delly: 0.8.6 -> 0.8.7R. RyanTM1-2/+2
2021-01-16treewide: stdenv.lib -> libBen Siraphob17-38/+38
2021-01-11treewide: with stdenv.lib; in meta -> with lib;Profpatsch72-142/+142
2021-01-08Merge branch 'master' into staging-nextJan Tojnar1-0/+30
2021-01-07Merge pull request #108432 from jbedo/fastpSandro1-0/+30
2021-01-07Merge branch 'master' into staging-nextJan Tojnar3-6/+6
2021-01-07fastp: init 0.20.1Justin Bedo1-0/+30
2021-01-06Merge pull request #108437 from jbedo/varscanSandro1-3/+3
2021-01-06Merge pull request #108435 from jbedo/lastSandro1-2/+2
2021-01-05varscan: 2.4.2 -> 2.4.4Justin Bedo1-3/+3
2021-01-05last: 1145 -> 1170Justin Bedo1-2/+2
2021-01-04raxml: cleanupSandro Jäckel1-1/+1
2021-01-03Merge staging-next into staginggithub-actions[bot]1-6/+6
2021-01-03Merge pull request #108300 from siraben/parallel-cmakeJohn Ericson9-18/+2
2021-01-03Merge pull request #108251 from prusnak/bowtie2Pavol Rusnak1-6/+6
2021-01-03Merge staging-next into staginggithub-actions[bot]1-0/+25
2021-01-03treewide: remove enableParallelBuilding = true if using cmakeBen Siraphob9-18/+2
2021-01-02bowtie2: 2.3.5.1 -> 2.4.2Pavol Rusnak1-6/+6
2021-01-02bowtie: init at at 1.3.0Pavol Rusnak1-0/+25
2021-01-01treewide: cmake buildInputs to nativeBuildInputs, minor cleanupsBen Siraphob2-2/+3
2020-12-21SPAdes: add python dependencyJustin Bedo1-2/+2
2020-12-14Merge pull request #106856 from jbedo/dellyMario Rodas1-2/+2
2020-12-14delly: 0.8.5 -> 0.8.6Justin Bedo1-2/+2
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