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2024-04-25jbrowse: 2.5.0 -> 2.11.0R. Ryantm1-2/+2
2024-04-24treewide: unbreak appimageTools.wrapType2 buildsPeder Bergebakken Sundt1-3/+1
2024-04-22treewide: switch from rocksdb -> rocksdb_8_3Jonas Heinrich1-2/+13
2024-04-20nest: fix hashWeijia Wang1-1/+1
2024-04-19Merge branch 'master' into staging-nextVladimír Čunát1-2/+2
2024-04-18Merge pull request #303357 from r-ryantm/auto-update/iqtreeWeijia Wang1-2/+2
2024-04-17Merge master into staging-nextgithub-actions[bot]1-2/+2
2024-04-17Merge pull request #304395 from r-ryantm/auto-update/bcftoolsAleksana1-2/+2
2024-04-16Merge master into staging-nextgithub-actions[bot]1-2/+2
2024-04-16Merge pull request #303754 from r-ryantm/auto-update/messer-slimWeijia Wang1-2/+2
2024-04-16bcftools: 1.19 -> 1.20R. Ryantm1-2/+2
2024-04-16Merge master into staging-nextgithub-actions[bot]1-2/+2
2024-04-13messer-slim: 4.2 -> 4.2.1R. Ryantm1-2/+2
2024-04-12python311Packages.nest: 3.6 -> 3.7R. Ryantm1-2/+2
2024-04-12Merge master into staging-nextgithub-actions[bot]1-2/+2
2024-04-12Merge pull request #301677 from r-ryantm/auto-update/minimap2Weijia Wang1-2/+2
2024-04-11iqtree: 2.3.1 -> 2.3.2R. Ryantm1-2/+2
2024-04-09Merge branch 'staging-next' into stagingWeijia Wang1-2/+2
2024-04-07seqkit: 2.8.0 -> 2.8.1R. Ryantm1-2/+2
2024-04-04minimap2: 2.27 -> 2.28R. Ryantm1-2/+2
2024-03-28Merge pull request #299223 from NixOS/python-updatesMartin Weinelt1-1/+1
2024-03-27python312Packages.cython: 0.29.36 -> 3.0.9Martin Weinelt1-1/+1
2024-03-26iqtree: 2.2.2.7 -> 2.3.1R. Ryantm1-2/+2
2024-03-22messer-slim: 4.1 -> 4.2R. Ryantm1-2/+2
2024-03-21treewide: remove licenses.agpl3Jussi Kuokkanen1-1/+1
2024-03-20conglomerate: change license to hpndUcjopejoe11-1/+1
2024-03-19astral: make deterministic and clean upTomaSajt2-16/+55
2024-03-19Merge pull request #296549 from TomaSajt/strip-java-archives-hookPol Dellaiera1-2/+2
2024-03-19treewide: add meta.mainProgram to packages with a single binarystuebinm43-0/+43
2024-03-17Merge pull request #294471 from r-ryantm/auto-update/deeptoolsWeijia Wang1-3/+3
2024-03-17treewide: use stripJavaArchivesHook instead of canonicalize-jars-hookTomaSajt1-2/+2
2024-03-17Merge pull request #295598 from r-ryantm/auto-update/mafftOTABI Tomoya1-2/+2
2024-03-15Merge pull request #295472 from r-ryantm/auto-update/minimap2Nick Cao1-2/+2
2024-03-13mafft: 7.520 -> 7.525R. Ryantm1-2/+2
2024-03-13minimap2: 2.26 -> 2.27R. Ryantm1-2/+2
2024-03-12Merge pull request #295208 from r-ryantm/auto-update/igvPol Dellaiera1-2/+2
2024-03-12igv: 2.17.2 -> 2.17.3R. Ryantm1-2/+2
2024-03-12seqkit: 2.7.0 -> 2.8.0R. Ryantm1-3/+3
2024-03-09deeptools: 3.5.4 -> 3.5.5R. Ryantm1-3/+3
2024-03-07Merge pull request #285423 from r-ryantm/auto-update/diamondWeijia Wang1-2/+2
2024-03-07Merge pull request #287668 from r-ryantm/auto-update/igvWeijia Wang1-2/+2
2024-03-01Merge pull request #289911 from r-ryantm/auto-update/lastJustin Bedő1-2/+2
2024-02-25sortmerna: fix `gcc-13` buildSergei Trofimovich1-0/+4
2024-02-20octopus-caller: fix `gcc-13` build failure (drop `-Werror`)Sergei Trofimovich1-4/+11
2024-02-19last: 1541 -> 1542R. Ryantm1-2/+2
2024-02-14last: 1540 -> 1541R. Ryantm1-2/+2
2024-02-14Merge pull request #287721 from trofi/megahit-gcc-13-fixkirillrdy1-1/+11
2024-02-14Merge pull request #287985 from trofi/svaba-gcc-13-fixkirillrdy1-0/+7
2024-02-11Merge pull request #286906 from ashgillman/masterNick Cao2-19/+8
2024-02-11svaba: fix `gcc-13` build failureSergei Trofimovich1-0/+7
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