mirror/nixpkgs - Nix packages collection

Age	Commit message (Collapse)	Author	Files	Lines
2024-06-18	Merge pull request #316782 from aaronjheng/poretools	Aleksana	1	-23/+0
	poretools: remove
2024-06-16	SPAdes: refactor	Zitrone	1	-32/+0

2024-06-13	kent: 465 -> 466	R. Ryantm	1	-2/+2

2024-06-11	poretools: remove	Aaron Jheng	1	-23/+0

2024-06-10	Merge pull request #318689 from r-ryantm/auto-update/ants	Weijia Wang	1	-2/+2
	ants: 2.5.1 -> 2.5.2
2024-06-10	Merge pull request #316965 from r-ryantm/auto-update/jbrowse	Peder Bergebakken Sundt	1	-2/+2
	jbrowse: 2.11.1 -> 2.11.2
2024-06-10	ants: 2.5.1 -> 2.5.2	R. Ryantm	1	-2/+2

2024-06-09	treewide: Remove the definite article from meta.description	Alexis Hildebrandt	4	-4/+4
	nix run nixpkgs#silver-searcher -- -G '\.nix$' -0l 'description."([Tt]he)? ' pkgs \ \| xargs -0 nix run nixpkgs#gnused -- -i '' -Ee 's/(description.")[Tt]he (.)/\1\U\2/'
2024-06-09	treewide: Remove indefinite article from meta.description	Alexis Hildebrandt	19	-19/+19
	nix run nixpkgs#silver-searcher -- -G '\.nix$' -0l 'description."[Aa]n?' pkgs \ \| xargs -0 nix run nixpkgs#gnused -- -i '' -Ee 's/(description.")[Aa]n? (.)/\1\U\2/'
2024-06-09	treewide: Remove ending period from meta.description	Alexis Hildebrandt	1	-1/+1
	nix run nixpkgs#silver-searcher -- -G '\.nix$' -0l 'description.".\.";' pkgs \ \| xargs -0 nix run nixpkgs#gnused -- -i '' -Ee 's/(description.*)\.";/\1";/'
2024-06-04	neuron: 8.2.3 -> 8.2.4; fixup	Connor Baker	2	-34/+29

2024-06-03	jbrowse: 2.11.1 -> 2.11.2	R. Ryantm	1	-2/+2

2024-06-02	Merge pull request #316556 from r-ryantm/auto-update/kent	Pol Dellaiera	1	-2/+2
	kent: 446 -> 465
2024-06-02	Merge pull request #312446 from r-ryantm/auto-update/bowtie2	Weijia Wang	1	-2/+2
	bowtie2: 2.5.3 -> 2.5.4
2024-06-02	kent: 446 -> 465	R. Ryantm	1	-2/+2

2024-05-27	Merge pull request #311696 from Pandapip1/fix-statoolkit-license	tomberek	1	-1/+1
	licenses: Add NCBI-PD
2024-05-22	last: 1543 -> 1544	R. Ryantm	1	-2/+2

2024-05-21	pkgs/applications: remove uneeded fetchpatch arguments	Sigmanificient	1	-1/+1

2024-05-20	treewide: remove unused occurence of fetchurl argument	Sigmanificient	1	-1/+1

2024-05-18	Merge pull request #312565 from r-ryantm/auto-update/seqkit	Nick Cao	1	-2/+2
	seqkit: 2.8.1 -> 2.8.2
2024-05-18	Merge pull request #310872 from r-ryantm/auto-update/jbrowse	Matthias Beyer	1	-2/+2
	jbrowse: 2.11.0 -> 2.11.1
2024-05-18	seqkit: 2.8.1 -> 2.8.2	R. Ryantm	1	-2/+2

2024-05-17	bowtie2: 2.5.3 -> 2.5.4	R. Ryantm	1	-2/+2

2024-05-16	iqtree: 2.3.2 -> 2.3.4	R. Ryantm	1	-2/+2

2024-05-14	sratoolkit: Assign correct license	Gavin John	1	-1/+1

2024-05-14	conglomerate: unstable-2017-09-10 -> unstable-2023-01-19	Raghav Sood	1	-3/+3

2024-05-14	conglomerate: nixfmt-rfc-style and modernization	Raghav Sood	1	-14/+46

2024-05-12	Merge pull request #308490 from natsukium/migrate/update	OTABI Tomoya	1	-10/+24
	migrate: 3.7.2 -> 5.0.6
2024-05-11	jbrowse: 2.11.0 -> 2.11.1	R. Ryantm	1	-2/+2

2024-05-06	Merge pull request #309432 from r-ryantm/auto-update/messer-slim	Nick Cao	1	-2/+2
	messer-slim: 4.2.1 -> 4.2.2
2024-05-06	Merge pull request #308676 from natsukium/dssp/update	OTABI Tomoya	1	-22/+3
	dssp: 4.4.5 -> 4.4.7, libcifpp: 7.0.3 -> 7.0.4
2024-05-06	messer-slim: 4.2.1 -> 4.2.2	R. Ryantm	1	-2/+2

2024-05-04	Merge pull request #306674 from r-ryantm/auto-update/jbrowse	Weijia Wang	1	-2/+2
	jbrowse: 2.5.0 -> 2.11.0
2024-05-03	dssp: 4.4.5 -> 4.4.7	natsukium	1	-22/+3
	Diff: https://github.com/PDB-REDO/dssp/compare/refs/tags/v4.4.5...v4.4.7 Changelog: https://github.com/PDB-REDO/libcifpp/releases/tag/refs/tags/v4.4.7
2024-05-02	migrate: refactor	natsukium	1	-6/+6

2024-05-02	migrate: add meta.mainProgram	natsukium	1	-0/+1

2024-05-02	migrate: 3.7.2 -> 5.0.6	natsukium	1	-3/+3

2024-05-02	migrate: format with nixfmt	natsukium	1	-3/+16

2024-05-02	Merge branch 'master' into staging-next	Vladimír Čunát	1	-2/+2

2024-05-01	last: 1542 -> 1543 (#307730)	R. RyanTM	1	-2/+2

2024-05-01	Merge master into staging-next	github-actions[bot]	1	-2/+2

2024-05-01	igv: 2.17.3 -> 2.17.4	R. Ryantm	1	-2/+2

2024-05-01	Merge branch 'master' into staging-next	K900	1	-7/+6

2024-04-29	seqtk: fix cross compilation, drop custom installPhase	Nick Cao	1	-7/+6

2024-04-28	Merge master into staging-next	github-actions[bot]	1	-16/+42

2024-04-28	mafft: enable simple test	natsukium	1	-0/+20

2024-04-28	mafft: prettify	natsukium	1	-15/+21

2024-04-28	mafft: 7.525 -> 7.526	natsukium	1	-2/+2
	Diff: https://gitlab.com/sysimm/mafft/-/compare/v7.525...v7.526
2024-04-27	treewide: wrapGAppsHook → wrapGAppsHook3	Jan Tojnar	2	-3/+3
	This was achieved using the following command: sd 'wrapGAppsHook\b' wrapGAppsHook3 (rg -l 'wrapGAppsHook\b') And then manually reverted the following changes: - alias in top-level.nix - function name in wrap-gapps-hook.sh - comment in postFixup of at-spi2-core - comment in gtk4 - comment in preFixup of 1password-gui/linux.nix - comment in postFixup of qgis/unwrapped-ltr.nix and qgis/unwrapped.nix - comment in postFixup of telegram-desktop - comment in postFixup of fwupd - buildCommand of mongodb-compass - postFixup of xflux-gui - comment in a patch in kdePackages.kde-gtk-config and plasma5Packages.kde-gtk-config - description of programs.sway.wrapperFeatures.gtk NixOS option (manual rebuild)
2024-04-25	Merge pull request #305974 from onny/rocksdb-update	Yt	1	-2/+13
	rocksdb: 8.3.2 -> 9.1.0, rocksdb_8_3: init at 8.3.2