Age | Commit message (Collapse) | Author | Files | Lines | |
---|---|---|---|---|---|
2024-06-18 | Merge pull request #316782 from aaronjheng/poretools | Aleksana | 1 | -23/+0 | |
poretools: remove | |||||
2024-06-16 | SPAdes: refactor | Zitrone | 1 | -32/+0 | |
2024-06-13 | kent: 465 -> 466 | R. Ryantm | 1 | -2/+2 | |
2024-06-11 | poretools: remove | Aaron Jheng | 1 | -23/+0 | |
2024-06-10 | Merge pull request #318689 from r-ryantm/auto-update/ants | Weijia Wang | 1 | -2/+2 | |
ants: 2.5.1 -> 2.5.2 | |||||
2024-06-10 | Merge pull request #316965 from r-ryantm/auto-update/jbrowse | Peder Bergebakken Sundt | 1 | -2/+2 | |
jbrowse: 2.11.1 -> 2.11.2 | |||||
2024-06-10 | ants: 2.5.1 -> 2.5.2 | R. Ryantm | 1 | -2/+2 | |
2024-06-09 | treewide: Remove the definite article from meta.description | Alexis Hildebrandt | 4 | -4/+4 | |
nix run nixpkgs#silver-searcher -- -G '\.nix$' -0l 'description.*"([Tt]he)? ' pkgs \ | xargs -0 nix run nixpkgs#gnused -- -i '' -Ee 's/(description.*")[Tt]he (.)/\1\U\2/' | |||||
2024-06-09 | treewide: Remove indefinite article from meta.description | Alexis Hildebrandt | 19 | -19/+19 | |
nix run nixpkgs#silver-searcher -- -G '\.nix$' -0l 'description.*"[Aa]n?' pkgs \ | xargs -0 nix run nixpkgs#gnused -- -i '' -Ee 's/(description.*")[Aa]n? (.)/\1\U\2/' | |||||
2024-06-09 | treewide: Remove ending period from meta.description | Alexis Hildebrandt | 1 | -1/+1 | |
nix run nixpkgs#silver-searcher -- -G '\.nix$' -0l 'description.*".*\.";' pkgs \ | xargs -0 nix run nixpkgs#gnused -- -i '' -Ee 's/(description.*)\.";/\1";/' | |||||
2024-06-04 | neuron: 8.2.3 -> 8.2.4; fixup | Connor Baker | 2 | -34/+29 | |
2024-06-03 | jbrowse: 2.11.1 -> 2.11.2 | R. Ryantm | 1 | -2/+2 | |
2024-06-02 | Merge pull request #316556 from r-ryantm/auto-update/kent | Pol Dellaiera | 1 | -2/+2 | |
kent: 446 -> 465 | |||||
2024-06-02 | Merge pull request #312446 from r-ryantm/auto-update/bowtie2 | Weijia Wang | 1 | -2/+2 | |
bowtie2: 2.5.3 -> 2.5.4 | |||||
2024-06-02 | kent: 446 -> 465 | R. Ryantm | 1 | -2/+2 | |
2024-05-27 | Merge pull request #311696 from Pandapip1/fix-statoolkit-license | tomberek | 1 | -1/+1 | |
licenses: Add NCBI-PD | |||||
2024-05-22 | last: 1543 -> 1544 | R. Ryantm | 1 | -2/+2 | |
2024-05-21 | pkgs/applications: remove uneeded fetchpatch arguments | Sigmanificient | 1 | -1/+1 | |
2024-05-20 | treewide: remove unused occurence of fetchurl argument | Sigmanificient | 1 | -1/+1 | |
2024-05-18 | Merge pull request #312565 from r-ryantm/auto-update/seqkit | Nick Cao | 1 | -2/+2 | |
seqkit: 2.8.1 -> 2.8.2 | |||||
2024-05-18 | Merge pull request #310872 from r-ryantm/auto-update/jbrowse | Matthias Beyer | 1 | -2/+2 | |
jbrowse: 2.11.0 -> 2.11.1 | |||||
2024-05-18 | seqkit: 2.8.1 -> 2.8.2 | R. Ryantm | 1 | -2/+2 | |
2024-05-17 | bowtie2: 2.5.3 -> 2.5.4 | R. Ryantm | 1 | -2/+2 | |
2024-05-16 | iqtree: 2.3.2 -> 2.3.4 | R. Ryantm | 1 | -2/+2 | |
2024-05-14 | sratoolkit: Assign correct license | Gavin John | 1 | -1/+1 | |
2024-05-14 | conglomerate: unstable-2017-09-10 -> unstable-2023-01-19 | Raghav Sood | 1 | -3/+3 | |
2024-05-14 | conglomerate: nixfmt-rfc-style and modernization | Raghav Sood | 1 | -14/+46 | |
2024-05-12 | Merge pull request #308490 from natsukium/migrate/update | OTABI Tomoya | 1 | -10/+24 | |
migrate: 3.7.2 -> 5.0.6 | |||||
2024-05-11 | jbrowse: 2.11.0 -> 2.11.1 | R. Ryantm | 1 | -2/+2 | |
2024-05-06 | Merge pull request #309432 from r-ryantm/auto-update/messer-slim | Nick Cao | 1 | -2/+2 | |
messer-slim: 4.2.1 -> 4.2.2 | |||||
2024-05-06 | Merge pull request #308676 from natsukium/dssp/update | OTABI Tomoya | 1 | -22/+3 | |
dssp: 4.4.5 -> 4.4.7, libcifpp: 7.0.3 -> 7.0.4 | |||||
2024-05-06 | messer-slim: 4.2.1 -> 4.2.2 | R. Ryantm | 1 | -2/+2 | |
2024-05-04 | Merge pull request #306674 from r-ryantm/auto-update/jbrowse | Weijia Wang | 1 | -2/+2 | |
jbrowse: 2.5.0 -> 2.11.0 | |||||
2024-05-03 | dssp: 4.4.5 -> 4.4.7 | natsukium | 1 | -22/+3 | |
Diff: https://github.com/PDB-REDO/dssp/compare/refs/tags/v4.4.5...v4.4.7 Changelog: https://github.com/PDB-REDO/libcifpp/releases/tag/refs/tags/v4.4.7 | |||||
2024-05-02 | migrate: refactor | natsukium | 1 | -6/+6 | |
2024-05-02 | migrate: add meta.mainProgram | natsukium | 1 | -0/+1 | |
2024-05-02 | migrate: 3.7.2 -> 5.0.6 | natsukium | 1 | -3/+3 | |
2024-05-02 | migrate: format with nixfmt | natsukium | 1 | -3/+16 | |
2024-05-02 | Merge branch 'master' into staging-next | Vladimír Čunát | 1 | -2/+2 | |
2024-05-01 | last: 1542 -> 1543 (#307730) | R. RyanTM | 1 | -2/+2 | |
2024-05-01 | Merge master into staging-next | github-actions[bot] | 1 | -2/+2 | |
2024-05-01 | igv: 2.17.3 -> 2.17.4 | R. Ryantm | 1 | -2/+2 | |
2024-05-01 | Merge branch 'master' into staging-next | K900 | 1 | -7/+6 | |
2024-04-29 | seqtk: fix cross compilation, drop custom installPhase | Nick Cao | 1 | -7/+6 | |
2024-04-28 | Merge master into staging-next | github-actions[bot] | 1 | -16/+42 | |
2024-04-28 | mafft: enable simple test | natsukium | 1 | -0/+20 | |
2024-04-28 | mafft: prettify | natsukium | 1 | -15/+21 | |
2024-04-28 | mafft: 7.525 -> 7.526 | natsukium | 1 | -2/+2 | |
Diff: https://gitlab.com/sysimm/mafft/-/compare/v7.525...v7.526 | |||||
2024-04-27 | treewide: wrapGAppsHook → wrapGAppsHook3 | Jan Tojnar | 2 | -3/+3 | |
This was achieved using the following command: sd 'wrapGAppsHook\b' wrapGAppsHook3 (rg -l 'wrapGAppsHook\b') And then manually reverted the following changes: - alias in top-level.nix - function name in wrap-gapps-hook.sh - comment in postFixup of at-spi2-core - comment in gtk4 - comment in preFixup of 1password-gui/linux.nix - comment in postFixup of qgis/unwrapped-ltr.nix and qgis/unwrapped.nix - comment in postFixup of telegram-desktop - comment in postFixup of fwupd - buildCommand of mongodb-compass - postFixup of xflux-gui - comment in a patch in kdePackages.kde-gtk-config and plasma5Packages.kde-gtk-config - description of programs.sway.wrapperFeatures.gtk NixOS option (manual rebuild) | |||||
2024-04-25 | Merge pull request #305974 from onny/rocksdb-update | Yt | 1 | -2/+13 | |
rocksdb: 8.3.2 -> 9.1.0, rocksdb_8_3: init at 8.3.2 |