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2020-02-24Merge pull request #80292 from bcdarwin/mrtrixLinus Heckemann1-0/+77
2020-02-16mrtrix: init at 3.0_RC3_latestBen Darwin1-0/+77
2020-02-15kallisto: 0.46.1 -> 0.46.2R. RyanTM1-2/+4
2020-02-11Merge pull request #79778 from jbedo/dellyDmitry Kalinkin1-4/+13
2020-02-11delly: 0.8.1 -> 0.8.2Justin Bedo1-4/+13
2020-02-10Merge pull request #79534 from r-ryantm/auto-update/lastRyan Mulligan1-2/+2
2020-02-10minc_tools: enable building conversion toolsBen Darwin1-3/+8
2020-02-10minc_tools: 2017-09-11 -> unstable-2019-12-04Ben Darwin2-4/+18
2020-02-08last: 1045 -> 1047R. RyanTM1-2/+2
2020-02-07picard-tools: 2.21.6 -> 2.21.8R. RyanTM1-2/+2
2020-02-05Revert "Revert "Merge master into staging-next""Frederik Rietdijk1-2/+2
2020-02-05Revert "Merge master into staging-next"Frederik Rietdijk1-2/+2
2020-02-04SPAdes: 3.13.1 -> 3.14.0R. RyanTM1-2/+2
2020-01-30seaview: 4.7 -> 5.0R. RyanTM1-2/+2
2020-01-27Merge pull request #78265 from Synthetica9/https-homepagesSilvan Mosberger1-1/+1
2020-01-24manta: init 1.6.0Justin Bedo1-0/+35
2020-01-22Merge pull request #78261 from r-ryantm/auto-update/picard-toolsRyan Mulligan1-2/+2
2020-01-22treewide: fix redirected urlsPatrick Hilhorst1-1/+1
2020-01-22picard-tools: 2.21.3 -> 2.21.6R. RyanTM1-2/+2
2020-01-19samtools: 1.9 -> 1.10Jonathan Ringer1-2/+2
2020-01-10python.pkgs wide: fix problematic urlsJonathan Ringer1-1/+1
2020-01-09bayescan: init at 2.1 (#68191)Bruno Bzeznik1-0/+39
2020-01-07blast: init at 2.10.0 (#61430)Luis Pedro Coelho2-0/+292
2020-01-06last: 1042 -> 1045R. RyanTM1-2/+2
2020-01-03Merge master into staging-nextFrederik Rietdijk1-2/+2
2020-01-02Merge pull request #76208 from r-ryantm/auto-update/bcftoolsRyan Mulligan1-2/+2
2019-12-30Merge gcc-9 into staging (#68029)Frederik Rietdijk3-9/+11
2019-12-30treewide: replace make/build/configure/patchFlags with nix listsMerijn Broeren1-1/+1
2019-12-30strelka: fix build w/ gcc9Franz Pletz1-1/+4
2019-12-29Merge pull request #75900 from jbedo/tebreakFrederik Rietdijk4-0/+327
2019-12-29tebreak: init at 1.0Justin Bedo1-0/+42
2019-12-26Merge remote-tracking branch 'origin/master' into gcc-9Franz Pletz11-21/+89
2019-12-22bcftools: 1.9 -> 1.10.2R. RyanTM1-2/+2
2019-12-20minia: init at 3.2.1Justin Bedo2-0/+255
2019-12-20last: init at 1042Justin Bedo1-0/+30
2019-12-18bedtools: 2.29.1 -> 2.29.2Justin Bedo1-2/+2
2019-12-16Merge pull request #75807 from jbedo/strelkaMario Rodas1-1/+2
2019-12-17strelka: fix broken buildJustin Bedo1-1/+2
2019-12-11bedtools: fix clang buildsJustin Bedo1-3/+4
2019-12-10bedtools: 2.29.0 -> 2.29.1Justin Bedo1-2/+2
2019-12-08kssd: init at 1.0Renato Alves1-0/+25
2019-12-08svaba: init at 1.1.0scalavision1-0/+42
2019-12-07Merge pull request #75095 from tbenst/bftoolsMario Rodas1-2/+2
2019-12-06bftools: 5.9.2 -> 6.3.0Tyler Benster1-2/+2
2019-12-01paml: 4.9i -> 4.9jR. RyanTM1-3/+2
2019-11-30kallisto: 0.46.0 -> 0.46.1 (#74430)R. RyanTM1-2/+2
2019-11-30picard-tools: 2.21.1 -> 2.21.3 (#74528)R. RyanTM1-2/+2
2019-11-27hmmer: 3.2.1 -> 3.3R. RyanTM1-2/+2
2019-11-20freebayes: 2017-08-23 -> 1.3.1 (2019-06-03)Kai Wohlfahrt1-3/+3
2019-11-14nifticlib and niftseg: change platform from linux to unix since these build o...Ben Darwin1-1/+1
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