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2019-04-07Merge master into staging-nextFrederik Rietdijk1-0/+24
2019-04-06Merge pull request #58931 from bzizou/migratePascal Wittmann1-0/+24
2019-04-05Merge branch 'master' into stagingJan Tojnar5-6/+54
2019-04-05migrate: init at 3.7.2Bruno Bzeznik1-0/+24
2019-04-03Merge pull request #58538 from bzizou/stacksmarkuskowa1-0/+19
2019-04-03stacks: init at 2.3eBruno Bzeznik1-0/+19
2019-04-01Merge commit '18aa59b0f26fc707e7313f8467e67159e61600c2' from master into stagingJohn Ericson2-0/+61
2019-03-31Merge pull request #58541 from luispedro/add_megahitmarkuskowa1-0/+29
2019-03-31megahit: init at 1.1.4Luis Pedro Coelho1-0/+29
2019-03-31bowtie2: 2.3.4.3 -> 2.3.5 (#58014)R. RyanTM1-2/+2
2019-03-27minimap2: 2.15 -> 2.16 (#57319)R. RyanTM1-2/+2
2019-03-27paml: 4.9h -> 4.9i (#57354)R. RyanTM1-2/+2
2019-03-26itsx: init at 1.1.1Bruno Bzeznik1-0/+34
2019-03-26Merge pull request #56522 from bzizou/messer-slimJoachim F1-0/+27
2019-03-21Merge remote-tracking branch 'origin/master' into stagingWael M. Nasreddine1-2/+2
2019-03-11Merge pull request #56391 from matthewbauer/cmake-treewideMatthew Bauer2-5/+2
2019-03-11treewide: remove BUILD_TESTING flagMatthew Bauer2-5/+2
2019-03-11picard-tools: 2.18.25 -> 2.18.27R. RyanTM1-2/+2
2019-03-03star: 2.7.0a -> 2.7.0cR. RyanTM1-2/+2
2019-03-03igv: 2.4.17 -> 2.4.19R. RyanTM1-2/+2
2019-02-28messer-slim: init at 3.2.1Bruno Bzeznik1-0/+27
2019-02-08cmtk: init at 3.3.1 (#54016)tbenst1-0/+24
2019-02-06Merge pull request #55298 from r-ryantm/auto-update/igvmarkuskowa1-2/+2
2019-02-05igv: 2.4.16 -> 2.4.17R. RyanTM1-2/+2
2019-02-03star: 2.6.1d -> 2.7.0aR. RyanTM1-2/+2
2019-01-31Merge pull request #53677 from jbedo/snpeff-4.3Tmarkuskowa1-3/+3
2019-01-31snpeff: 4.3q -> 4.3tJustin Bedo1-3/+3
2019-01-28minimap2: 2.14 -> 2.15R. RyanTM1-2/+2
2019-01-28picard-tools: 2.18.23 -> 2.18.25R. RyanTM1-2/+2
2019-01-16picard-tools: 2.18.21 -> 2.18.23R. RyanTM1-2/+2
2019-01-13minimap2: 2.10 -> 2.14 (#52845)R. RyanTM1-2/+2
2019-01-10bftools: init at 5.9.2 (#53769)tbenst1-0/+41
2019-01-03Merge master into staging-nextFrederik Rietdijk1-2/+2
2019-01-03picard-tools: 2.18.20 -> 2.18.21R. RyanTM1-2/+2
2018-12-27Merge staging-next into stagingFrederik Rietdijk1-2/+2
2018-12-26igv: 2.4.15 -> 2.4.16R. RyanTM1-2/+2
2018-12-24Merge branch 'master' into stagingJan Tojnar1-2/+2
2018-12-19Merge pull request #52134 from r-ryantm/auto-update/picard-toolsRenaud1-2/+2
2018-12-19Merge staging-next into stagingFrederik Rietdijk1-2/+2
2018-12-18Merge branch 'staging' into make-perl-pathdvolth1-2/+2
2018-12-16Merge pull request #52015 from r-ryantm/auto-update/starmarkuskowa1-2/+2
2018-12-15lib.makePerlPath -> perlPackages.makePerlPathvolth6-13/+13
2018-12-14picard-tools: 2.18.17 -> 2.18.20R. RyanTM1-2/+2
2018-12-14star: 2.6.1c -> 2.6.1dR. RyanTM1-2/+2
2018-12-10Merge pull request #51534 from jbedo/bowtie2Maximilian Bosch1-2/+2
2018-12-05bowtie2: fix missing dependenciesJustin Bedo1-2/+2
2018-11-29Merge staging-next into stagingFrederik Rietdijk1-4/+5
2018-11-27picard-tools: 2.18.14 -> 2.18.17 (#50647)R. RyanTM1-4/+5
2018-11-20Merge pull request #50527 from matthewbauer/ninja-check-phaseMatthew Bauer5-11/+0
2018-11-18treewide: remove ctest usagesMatthew Bauer5-11/+0
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