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2018-07-13igv: 2.4.11 -> 2.4.13R. RyanTM1-2/+2
2018-07-09igv: 2.4.10 -> 2.4.11 (#43003)R. RyanTM1-2/+2
2018-07-09Merge pull request #43096 from jbedo/mosdepthSilvan Mosberger1-0/+42
2018-07-09mosdepth: init 0.2.3Justin Bedo1-0/+42
2018-07-06picard-tools: 2.18.7 -> 2.18.9 (#42967)R. RyanTM1-2/+2
2018-06-28Merge pull request #42571 from iimog/hmmerMatthew Bauer1-0/+28
2018-06-28treewide: http -> https sources (#42676)Silvan Mosberger3-3/+3
2018-06-25hmmer: init at 3.1b2Markus Ankenbrand1-0/+28
2018-06-18picard-tools: 2.18.5 -> 2.18.7 (#41975)R. RyanTM1-2/+2
2018-06-18raxml: 8.2.11 -> 8.2.12 (#41964)R. RyanTM1-2/+2
2018-05-26picard-tools: 2.18.4 -> 2.18.5R. RyanTM1-2/+2
2018-05-15star: 2.5.3a -> 2.6.0c (#40518)Arcadio Rubio García1-2/+2
2018-05-14minimap2: init at 2.10Arcadio Rubio García1-0/+31
2018-05-12picard-tools: 2.18.3 -> 2.18.4R. RyanTM1-2/+2
2018-05-04Merge pull request #39740 from r-ryantm/auto-update/picard-toolsMatthew Justin Bauer1-2/+2
2018-05-03paml: 4.9g -> 4.9hR. RyanTM1-2/+2
2018-04-30picard-tools: 2.18.2 -> 2.18.3R. RyanTM1-2/+2
2018-04-27conglomerate: init at 2017-09-10Ben Darwin1-0/+34
2018-04-21Merge branch 'master' into minc_ecosystemJörg Thalheim2-4/+4
2018-04-21Merge pull request #39197 from r-ryantm/auto-update/picard-toolsJörg Thalheim1-2/+2
2018-04-20picard-tools: 2.18.1 -> 2.18.2R. RyanTM1-2/+2
2018-04-10samtools: 1.7 -> 1.8R. RyanTM1-2/+2
2018-04-09ezminc: init at 2017-08-29Ben Darwin1-0/+32
2018-04-09address license/version issues for PR #29782Ben Darwin5-10/+16
2018-04-09inormalize: init at 1.0.20 (develop branch)Ben Darwin3-0/+58
2018-04-09n3: init at 1.0.20Ben Darwin1-0/+37
2018-04-09minc-widgets: init at "1.0.0" (package seems to lack a consistent version)Ben Darwin1-0/+33
2018-04-09mni_autoreg: init at 0.99.70Ben Darwin1-0/+34
2018-04-09minc-tools: 2.3.00 -> 2.3.01 (develop branch)Ben Darwin1-10/+16
2018-04-08Merge pull request #38165 from r-ryantm/auto-update/picard-toolsMatthew Justin Bauer1-2/+2
2018-04-08bcftools: python/perl is needed for shebangsJörg Thalheim1-4/+2
2018-04-07bcftools: 1.7 -> 1.8R. RyanTM1-2/+2
2018-03-31igv: 2.4.9 -> 2.4.10R. RyanTM1-2/+2
2018-03-30picard-tools: 2.17.11 -> 2.18.1R. RyanTM1-2/+2
2018-03-19Merge pull request #36846 from jbedo/snpeffMatthew Justin Bauer1-3/+3
2018-03-19Merge pull request #37079 from ryantm/auto-update/picard-toolsMatthew Justin Bauer1-2/+2
2018-03-17Merge pull request #37009 from ryantm/auto-update/igvGabriel Ebner1-2/+2
2018-03-15picard-tools: 2.17.10 -> 2.17.11Ryan Mulligan1-2/+2
2018-03-14igv: 2.4.8 -> 2.4.9Ryan Mulligan1-2/+2
2018-03-12snpeff: 4.3t -> 4.3qJustin Bedo1-3/+3
2018-03-09paml: 4.9c -> 4.9gRyan Mulligan1-2/+2
2018-02-28picard-tools: 2.17.4 -> 2.17.10Ryan Mulligan1-2/+2
2018-02-26igv: 2.4.6 -> 2.4.8Ryan Mulligan1-2/+2
2018-02-26Merge pull request #35555 from ryantm/auto-update/bcftools-1.6-to-1.7adisbladis1-2/+2
2018-02-25bowtie2: 2.3.4 -> 2.3.4.1Ryan Mulligan1-2/+2
2018-02-25bcftools: 1.6 -> 1.7Ryan Mulligan1-2/+2
2018-02-10Merge pull request #34530 from unode/samtools-oldJörg Thalheim2-0/+56
2018-02-10Merge pull request #34531 from unode/raxmlJörg Thalheim1-0/+42
2018-02-06samtools: 1.6 -> 1.7Renato Alves1-2/+2
2018-02-02samtools_0_1_19: init at 0.1.19Renato Alves2-0/+56
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