about summary refs log tree commit diff
path: root/pkgs/applications/science/chemistry
AgeCommit message (Collapse)AuthorFilesLines
2024-06-18openmolcas: 24.02 -> 24.06Phillip Seeber1-2/+2
2024-06-10Merge pull request #315778 from r-ryantm/auto-update/gwyddionWeijia Wang1-2/+2
gwyddion: 2.65 -> 2.66
2024-06-10Merge pull request #318493 from r-ryantm/auto-update/jmol7c6f434c1-2/+2
jmol: 16.2.15 -> 16.2.17
2024-06-09treewide: Remove the definite article from meta.descriptionAlexis Hildebrandt1-1/+1
nix run nixpkgs#silver-searcher -- -G '\.nix$' -0l 'description.*"([Tt]he)? ' pkgs \ | xargs -0 nix run nixpkgs#gnused -- -i '' -Ee 's/(description.*")[Tt]he (.)/\1\U\2/'
2024-06-09treewide: Remove indefinite article from meta.descriptionAlexis Hildebrandt3-3/+3
nix run nixpkgs#silver-searcher -- -G '\.nix$' -0l 'description.*"[Aa]n?' pkgs \ | xargs -0 nix run nixpkgs#gnused -- -i '' -Ee 's/(description.*")[Aa]n? (.)/\1\U\2/'
2024-06-09jmol: 16.2.15 -> 16.2.17R. Ryantm1-2/+2
2024-06-04gwyddion: 2.65 -> 2.66R. Ryantm1-2/+2
2024-05-20treewide: remove unused occurence of fetchurl argumentSigmanificient1-1/+0
2024-05-15cp2k: remove dev inputs from dependeciesMarkus Kowalewski2-4/+50
2024-05-12Merge pull request #308430 from r-ryantm/auto-update/jmolMauricio Collares1-2/+2
jmol: 16.1.63 -> 16.2.15
2024-05-10octopus: 14.0 -> 14.1R. Ryantm1-2/+2
2024-05-10jmol: 16.1.63 -> 16.2.15R. Ryantm1-2/+2
2024-05-01Merge branch 'master' into staging-nextK9001-10/+52
2024-05-01pymol: remove no longer needed `disableHardening`samlich1-1/+0
2024-05-01pymol: add natsukium as maintainernatsukium1-1/+1
2024-05-01pymol: enable testsnatsukium1-0/+36
2024-04-27treewide: wrapGAppsHook → wrapGAppsHook3Jan Tojnar1-2/+2
This was achieved using the following command: sd 'wrapGAppsHook\b' wrapGAppsHook3 (rg -l 'wrapGAppsHook\b') And then manually reverted the following changes: - alias in top-level.nix - function name in wrap-gapps-hook.sh - comment in postFixup of at-spi2-core - comment in gtk4 - comment in preFixup of 1password-gui/linux.nix - comment in postFixup of qgis/unwrapped-ltr.nix and qgis/unwrapped.nix - comment in postFixup of telegram-desktop - comment in postFixup of fwupd - buildCommand of mongodb-compass - postFixup of xflux-gui - comment in a patch in kdePackages.kde-gtk-config and plasma5Packages.kde-gtk-config - description of programs.sway.wrapperFeatures.gtk NixOS option (manual rebuild)
2024-04-20pymol: modernizenatsukium1-6/+13
2024-04-20pymol: 2.5.0 -> 3.0.0natsukium1-2/+2
Diff: https://github.com/schrodinger/pymol-open-source/compare/v2.5.0...v3.0.0
2024-03-30Merge pull request #299989 from markuskowa/upd-octopusmarkuskowa1-28/+16
octopus: 13.0 -> 14.0, fix scalapack
2024-03-29octopus: 13.0 -> 14.0, switch to cmakeMarkus Kowalewski1-28/+16
2024-03-28Merge pull request #296812 from aaronjheng/gwyddionWeijia Wang1-8/+0
gwyddion: remove broken python support
2024-03-19treewide: add meta.mainProgram to packages with a single binarystuebinm10-0/+10
The nixpkgs-unstable channel's programs.sqlite was used to identify packages producing exactly one binary, and these automatically added to their package definitions wherever possible.
2024-03-18gwyddion: remove broken python supportAaron Jheng1-8/+0
2024-03-09treewide: fix sourceRoot for fetchgit-based srcYueh-Shun Li1-4/+4
According to Nixpkgs manual[1] and NixOS 23.11 Release Note[2], the `sourceRoot` attribute passed to `stdenv.mkDerivation` should be specified as `"${src.name}"` or `"${src.name}/subdir"` when `src` is produced using `fetchgit`-based fetchers. `sourceRoot = "source"` or `sourceRoot = "source/subdir"` is based on the assumption that the `name` attribute of these pre-unpacked fetchers are always `"source"`, which is not the case. Expecting constant `name` also makes the source FODs prone to irrelevent hashes during version bumps. [1]: https://nixos.org/manual/nixpkgs/unstable/#var-stdenv-sourceRoot [2]: https://nixos.org/manual/nixos/stable/release-notes#sec-release-23.11
2024-03-08jmol: 16.1.53 -> 16.1.63R. Ryantm1-2/+2
2024-02-20Merge pull request #288514 from sheepforce/avogadro2markuskowa1-3/+3
avogadro2: 1.98.1 -> 1.99.0
2024-02-20openmolcas: 23.10 -> 24.02Phillip Seeber2-45/+4
2024-02-15openmolcas: bump boost versionWeijia Wang1-3/+3
2024-02-14avogadro2: 1.98.1 -> 1.99.0Phillip Seeber1-3/+3
2024-02-07jmol: 16.1.51 -> 16.1.53R. Ryantm1-2/+2
2024-01-30Merge pull request #284940 from r-ryantm/auto-update/mopacmarkuskowa1-2/+2
mopac: 22.1.0 -> 22.1.1
2024-01-30octopus: add mpi and libvdwxc supportPhillip Seeber1-7/+41
2024-01-30mopac: 22.1.0 -> 22.1.1R. Ryantm1-2/+2
2024-01-28jmol: 16.1.49 -> 16.1.51R. Ryantm1-2/+2
2024-01-25Merge master into staging-nextgithub-actions[bot]1-4/+4
2024-01-25octopus: fixup build by adding `which`Vladimír Čunát1-1/+2
https://hydra.nixos.org/build/247364187/nixlog/1/tail
2024-01-25marvin: pin openjdk17Weijia Wang1-2/+2
2024-01-25marvin: 23.12.0 -> 23.17.0R. Ryantm1-2/+2
2024-01-23jmol: 16.1.47 -> 16.1.49R. Ryantm1-2/+2
2024-01-22Merge pull request #282890 from sheepforce/molcas-fixmarkuskowa2-0/+40
openmolcas: fix pyparsing >= 3.11 compatibility
2024-01-22openmolcas: fix pyparsing >= 3.11 compatibilityPhillip Seeber2-0/+40
2024-01-20Merge pull request #278851 from r-ryantm/auto-update/gwyddionWeijia Wang1-2/+2
gwyddion: 2.64 -> 2.65
2024-01-19molden: disable parallel buildingPhillip Seeber1-1/+1
2024-01-10python311Packages.pyqt5-sip: rename from pyqt5_sipFelix Buehler1-1/+1
2024-01-09cp2k: 2023.2 -> 2024.1Phillip Seeber1-2/+3
cp2k: fix hdf5 includes
2024-01-09cp2k: fix CUDA supportMarkus Kowalewski1-10/+17
Note, that it currently does not build with cufft support. Any attempt to build it cufft suport results in missing symbols from CP2K itself.
2024-01-05gwyddion: 2.64 -> 2.65R. Ryantm1-2/+2
2024-01-04wxmacmolplt: 7.7.2 -> 7.7.3R. Ryantm1-2/+2
2023-12-25Revert "gwyddion: mark as broken"Doron Behar1-1/+2