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2024-05-02treewide: remove unreferenced patch files (#308127)Peder Bergebakken Sundt2-88/+0
Found with `fd \\.patch$ pkgs/ -x bash -c 'rg -F "{/}" pkgs/ -q || echo {}'`
2024-05-01root: don't do anything specific for Python 2Jonas Rembser1-1/+0
Python 2 support is deprecated in ROOT 6.30 and will be removed from 6.32, due to release in May: https://github.com/root-project/root/pull/13948
2024-05-01maintainers: add guitargeekJonas Rembser1-1/+1
2024-05-01root: remove the hack that disables the splash screen by defaultJonas Rembser1-3/+0
Remove the hack that disables the splash screen by default, as this has already been done in ROOT itself some time ago: https://github.com/root-project/root/pull/4187
2024-05-01root: remove some explicit disabling of compiler warnings on clangJonas Rembser1-3/+0
Remove some explicit disabling of compiler warnings on clang. There is no need for that: we saw the warnings on our own CI and made sure to either fix or disable them.
2024-05-01root: remove deprecated build flagsJonas Rembser1-12/+0
Remove several deprecated or removed build options. See https://github.com/root-project/root/blob/v6-30-00-patches/cmake/modules/RootBuildOptions.cmake
2024-05-01root: 6.30.04 -> 6.30.06Jonas Rembser1-2/+2
2024-04-28snakemake: 8.10.7 -> 8.11.0R. Ryantm1-2/+2
2024-04-25Merge pull request #304273 from r-ryantm/auto-update/gplatesMatthias Beyer1-2/+2
gplates: 2.4 -> 2.5
2024-04-22python311Packages.snakemake: 8.10.6 -> 8.10.7R. Ryantm1-2/+2
2024-04-15cwltool: 3.1.20240112164112 -> 3.1.20240404144621R. Ryantm1-2/+2
2024-04-15gplates: 2.4 -> 2.5R. Ryantm1-2/+2
2024-04-11Merge pull request #300785 from r-ryantm/auto-update/boincWeijia Wang1-2/+2
boinc: 7.24.3 -> 8.0.1
2024-04-10snakemake: 8.10.4 -> 8.10.6R. Ryantm1-2/+2
2024-04-02Merge pull request #300290 from NixOS/colmap-autoaddWeijia Wang1-2/+4
colmap: use pkgs.autoAddDriverRunpath
2024-04-01boinc: 7.24.3 -> 8.0.1R. Ryantm1-2/+2
2024-04-01colmap: use pkgs.autoAddDriverRunpathJonathan Ringer1-2/+4
2024-03-31snakemake: 8.4.12 -> 8.10.4Dmitry Kalinkin1-2/+3
2024-03-27cytoscape: 3.10.1 -> 3.10.2R. Ryantm1-2/+2
2024-03-19Merge pull request #281576 from yannham/refactor/cuda-setup-hooks-refactorSomeone1-1/+1
cudaPackages: generalize and refactor setup hooks
2024-03-19treewide: add meta.mainProgram to packages with a single binarystuebinm12-0/+12
The nixpkgs-unstable channel's programs.sqlite was used to identify packages producing exactly one binary, and these automatically added to their package definitions wherever possible.
2024-03-15cudaPackages: generalize and refactor setup hookYann Hamdaoui1-1/+1
This PR refactor CUDA setup hooks, and in particular autoAddOpenGLRunpath and autoAddCudaCompatRunpathHook, that were using a lot of code in common (in fact, I introduced the latter by copy pasting most of the bash script of the former). This is not satisfying for maintenance, as a recent patch showed, because we need to duplicate changes to both hooks. This commit abstract the common part in a single shell script that applies a generic patch action to every elf file in the output. For autoAddOpenGLRunpath the action is just addOpenGLRunpath (now addDriverRunpath), and is few line function for autoAddCudaCompatRunpathHook. Doing so, we also takes the occasion to use the newer addDriverRunpath instead of the previous addOpenGLRunpath, and rename the CUDA hook to reflect that as well. Co-Authored-By: Connor Baker <connor.baker@tweag.io>
2024-03-14Update Folding@home client to 8.3.7 (#295745)Sergey Vinokurov1-5/+10
Depend re2, libevent during build sisnce 8.3.7 appears to link with them. Depend on git because client wan’t to know what revision it was built from. Add zlib and expat to FHS environment because some workunits depend on them and cause lots of rejections if those libraries are not available. Unfortunately they don’t appear to be bundled as part of work distribution.
2024-03-09treewide: fix sourceRoot for fetchgit-based srcYueh-Shun Li1-1/+1
According to Nixpkgs manual[1] and NixOS 23.11 Release Note[2], the `sourceRoot` attribute passed to `stdenv.mkDerivation` should be specified as `"${src.name}"` or `"${src.name}/subdir"` when `src` is produced using `fetchgit`-based fetchers. `sourceRoot = "source"` or `sourceRoot = "source/subdir"` is based on the assumption that the `name` attribute of these pre-unpacked fetchers are always `"source"`, which is not the case. Expecting constant `name` also makes the source FODs prone to irrelevent hashes during version bumps. [1]: https://nixos.org/manual/nixpkgs/unstable/#var-stdenv-sourceRoot [2]: https://nixos.org/manual/nixos/stable/release-notes#sec-release-23.11
2024-03-01Merge pull request #287403 from trofi/graphia-gcc-13-fix-updateMario Rodas1-14/+15
graphia: 3.2 -> 4.2
2024-02-23snakemake: 8.4.8 -> 8.4.12R. Ryantm1-2/+2
2024-02-19sasview: add changelog to metaFabian Affolter1-0/+1
2024-02-19sasview: 5.0.4 -> 5.0.6Fabian Affolter1-16/+16
Diff: https://github.com/SasView/sasview/compare/refs/tags/v5.0.4...v5.0.6
2024-02-19Merge pull request #289381 from r-ryantm/auto-update/snakemakeOTABI Tomoya1-2/+2
snakemake: 8.4.4 -> 8.4.8
2024-02-17xrootd: fix plugin loading on Linux (#289140)Dmitry Kalinkin1-6/+2
2024-02-16snakemake: 8.4.4 -> 8.4.8R. Ryantm1-2/+2
2024-02-14Merge pull request #285505 from GaetanLepage/xrootDmitry Kalinkin1-0/+12
xrootd: 5.5.5 -> 5.6.6, python311Packages.xrootd: init at 5.6.6
2024-02-14openmvg: unstable-2022-12-30 -> 2.1Bouke van der Bijl1-11/+42
* Use the nixpkgs libraries instead of the vendored ones * Add updateScript Co-authored-by: Nick Cao <nickcao@nichi.co>
2024-02-13xrootd: 5.5.5 -> 5.6.6Gaetan Lepage1-0/+12
Changelog: https://github.com/xrootd/xrootd/releases/tag/v5.6.6 Structured attrs don't work with cmakeFlags - only first item is passed. Co-authored-by: Dmitry Kalinkin <dmitry.kalinkin@gmail.com>
2024-02-11openrefine: 3.7.7 -> 3.7.9R. Ryantm1-2/+2
2024-02-10javaPackages.jogl_2_4_0: rename to joglWeijia Wang1-3/+3
2024-02-08graphia: 3.2 -> 4.2Sergei Trofimovich1-14/+15
The main change is the build fis against `gcc-13` https://hydra.nixos.org/build/247540136: /build/source/source/thirdparty/breakpad/src/client/linux/handler/minidump_descriptor.h:115:3: error: 'uintptr_t' does not name a type 115 | uintptr_t address_within_principal_mapping() const { | ^~~~~~~~~ Changes: - https://github.com/graphia-app/graphia/releases/tag/4.0 - https://github.com/graphia-app/graphia/releases/tag/4.1 - https://github.com/graphia-app/graphia/releases/tag/4.2
2024-02-06snakemake: 8.3.2 -> 8.4.4R. Ryantm1-2/+2
2024-02-06openrefine: set meta.mainProgramRaphael Das Gupta1-0/+1
2024-02-04Merge pull request #282757 from r-ryantm/auto-update/bada-bibWeijia Wang1-2/+2
bada-bib: 0.8.0 -> 0.8.1
2024-02-04gplates: 2.3.0 -> 2.4arthsmn1-14/+12
2024-02-03Merge pull request #265959 from risicle/ris-openrefineRobert Scott2-0/+156
openrefine: init at 3.7.7
2024-02-03openrefine: init at 3.7.7Robert Scott2-0/+156
2024-02-01Merge pull request #285171 from r-ryantm/auto-update/boinch7x41-2/+2
boinc: 7.24.2 -> 7.24.3
2024-02-01Merge pull request #285382 from wegank/gplates-fixWeijia Wang1-0/+2
gplates: fix runtime error
2024-01-31gplates: fix runtime errorWeijia Wang1-0/+2
2024-01-31root: 6.30.02 -> 6.30.04 (#285339)Dmitry Kalinkin1-10/+2
2024-01-31boinc: 7.24.2 -> 7.24.3R. Ryantm1-2/+2
2024-01-29fahclient: 8.1.18 -> 8.3.1 (#281830)Jonas Chevalier1-8/+9
* fahclient: 8.1.18 -> 8.3.1 * Update pkgs/applications/science/misc/foldingathome/client.nix Co-authored-by: Robert Schütz <github@dotlambda.de> * Update pkgs/applications/science/misc/foldingathome/client.nix Co-authored-by: Robert Schütz <github@dotlambda.de> --------- Co-authored-by: Robert Schütz <github@dotlambda.de>
2024-01-27snakemake: 8.2.1 -> 8.3.2 (#284218)R. RyanTM1-2/+2
generated by cgit-pink 1.4.1 (git 2.36.1) at 2024-08-07 10:27:42 +0000