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2023-05-31alt-ergo: 2.4.2 → 2.4.3Vincent Laporte1-3/+3
(cherry picked from commit 1f7e936bb928c76c406999b26edaa2ecc8ad139f)
2023-05-28openbugs: init at 3.2.3Andres Navarro1-0/+22
(cherry picked from commit cfbff1faffc96af3dc4223fa12f6f4da6077decc)
2023-05-26flatcam: fix buildSilvan Mosberger1-0/+4
(cherry picked from commit 5c042401b47fc25f6d52d0525ac69b55a9c9ea87)
2023-05-22Merge pull request #233453 from collares/sage-platformsMauricio Collares1-0/+1
sage: add meta.platforms
2023-05-22Merge pull request #233441 from evils/kicadpennae1-3/+13
kicad: make KICAD7_TEMPLATE_DIR a single path
2023-05-22sage: add meta.platformsMauricio Collares1-0/+1
2023-05-22kicad: make KICAD7_TEMPLATE_DIR a single pathEvils1-3/+13
workaround for the upstream issue of not searching a : separated path
2023-05-22Merge pull request #233336 from smancill/shogun-fix-buildRyan Lahfa2-14/+51
shogun: fix build
2023-05-22Merge pull request #218014 from collares/singular431p3Sandro15-623/+181
2023-05-22iqtree: set platformsWeijia Wang1-2/+10
2023-05-22iqtree: 2.2.0.4 -> 2.2.2.4R. Ryantm1-2/+2
2023-05-21shogun: disable broken testSebastián Mancilla1-0/+2
Shogun has been broken for a while [0]. Looks like the latest update to openblas, by f07a0615ea8 (openblas: 0.3.20 -> 0.3.21, 2022-08-10), broke the `libshogun-mathematics_lapack` example. It calculates the eigenvectors for a matrix, but the assertions now fail: compute_eigenvectors A=[ [ -0.500000000000000111, 0.707106781186547351, 0.5], [ 0.707106781186547351, 1.04083408558608426e-16, 0.707106781186547129], [ -0.499999999999999722, -0.707106781186547462, 0.5] ] eigenvalues=[-1.41421356237309492,1.04083408558608426e-17,1.41421356237309492] terminate called after throwing an instance of 'shogun::ShogunException' The darwin build output shows a bit more detail: assertion is_equal(A(0,0), 0.5, eps) failed in void test_ev() file /tmp/nix-build-shogun-6.1.4.drv-0/source/examples/undocumented/libshogun/mathematics_lapack.cpp line 49 Disable the test to fix the build, although the results seem "correct". It appears that openblas now calculates values with slightly less precision, thus the assertion fails due to the expected epsilon. [0]: https://hydra.nixos.org/build/194671473
2023-05-21shogun: disable tests that take too longSebastián Mancilla1-0/+4
The checkPhase may take from 30 minutes up to 2 hours and 30 minutes on Hydra due to these tests: [...] 311/375 Test #311: libshogun-evaluation_cross_validation_classification ............ Passed 247.33 sec 312/375 Test #313: libshogun-evaluation_cross_validation_mkl_weight_storage ........ Passed 428.31 sec 315/375 Test #312: libshogun-evaluation_cross_validation_locked_comparison ......... Passed 880.44 sec 341/375 Test #316: libshogun-evaluation_cross_validation_regression ................ Passed 380.48 sec 342/375 Test #343: libshogun-modelselection_grid_search_kernel ..................... Passed 4866.85 sec 343/375 Test #344: libshogun-modelselection_grid_search_linear ..................... Passed 574.78 sec 345/375 Test #342: libshogun-modelselection_combined_kernel_sub_parameters ......... Passed 5929.90 sec 375/375 Test #346: libshogun-modelselection_grid_search_multiclass_svm ............. Passed 1826.27 sec [...] Total Test time (real) = 9046.65 sec checkPhase completed in 2 hours 30 minutes 47 seconds
2023-05-21shogun: fix compiler warningsSebastián Mancilla2-0/+27
Fix warnings related to virtual destruction. Kinda important to fix.
2023-05-21shogun: refactor derivationSebastián Mancilla1-14/+18
2023-05-21sageWithDoc: run src/doc/bootstrap script before docbuildMauricio Collares2-17/+21
2023-05-21sage: 9.8 -> 10.0Mauricio Collares9-464/+130
2023-05-21giac, giac-with-xcas: 1.9.0-29 -> 1.9.0-43Mauricio Collares2-10/+24
2023-05-20singular: 4.3.1p2 -> 4.3.2p1Mauricio Collares1-4/+3
2023-05-20pari: 2.15.2 -> 2.15.3Mauricio Collares1-6/+7
2023-05-20maxima-ecl-5_45: removeMauricio Collares1-126/+0
2023-05-19pkgs: fix typosfigsoda1-1/+1
2023-05-20Merge pull request #232767 from r-ryantm/auto-update/dataexplorerWeijia Wang1-2/+2
dataexplorer: 3.7.6 -> 3.7.7
2023-05-19dataexplorer: 3.7.6 -> 3.7.7R. Ryantm1-2/+2
2023-05-18Merge pull request #232547 from r-ryantm/auto-update/cytoscapeNick Cao1-2/+2
cytoscape: 3.9.1 -> 3.10.0
2023-05-19Merge pull request #232477 from fabaff/strictdoc-fixSandro2-61/+32
strictdoc: 0.0.26 -> 0.0.40
2023-05-18cytoscape: 3.9.1 -> 3.10.0R. Ryantm1-2/+2
2023-05-18Merge pull request #231635 from natsukium/bwa/build-on-aarch64Weijia Wang1-18/+14
bwa: 0.7.17 -> unstable-2022-09-23
2023-05-17isabelle-components.isabelle-linter: add platformsWeijia Wang1-0/+1
2023-05-17strictdoc: 0.0.26 -> 0.0.40Fabian Affolter2-61/+32
2023-05-17isabelle-linter: unstable-2022-09-05 -> 1.2.1Andreas Vollert1-3/+3
2023-05-17Merge pull request #229008 from whonore/dafny-4Guillaume Maudoux2-0/+245
dafny: 2.3.0 -> 4.0.0
2023-05-16Merge pull request #232217 from r-ryantm/auto-update/primesieveWeijia Wang1-2/+2
primesieve: 11.0 -> 11.1
2023-05-16primesieve: 11.0 -> 11.1R. Ryantm1-2/+2
2023-05-16Merge pull request #232076 from nagy/betaflightNick Cao1-0/+7
betaflight-configurator: reduce size
2023-05-16Merge pull request #231826 from mweinelt/scikitimage-aliasMartin Weinelt1-1/+1
python310Packages.scikit-image: rename from scikitimage
2023-05-15betaflight-configurator: reduce sizeDaniel Nagy1-0/+7
This reduces the size of the output from 512.5M to 233.9M.
2023-05-15fritzing: added meta.mainProgram (#232059)Rabjerg1-0/+1
2023-05-15Merge pull request #231975 from jbedo/fastpNick Cao1-2/+2
fastp: 0.23.2 -> 0.23.3
2023-05-15bwa: add runHooknatsukium1-0/+4
2023-05-15bwa: update licensenatsukium1-1/+1
2023-05-15bwa: 0.7.17 -> unstable-2022-09-23natsukium1-17/+9
Diff: https://github.com/lh3/bwa/compare/v0.7.17...139f68fc4c3747813783a488aef2adc86626b01b
2023-05-15Merge pull request #231598 from natsukium/truvari/disable-tests-darwinRyan Lahfa1-0/+14
truvari: disable some tests on darwin
2023-05-15fastp: 0.23.2 -> 0.23.3Justin Bedo1-2/+2
2023-05-15truvari: add patches to fix `truvari anno`natsukium1-0/+14
2023-05-14Merge pull request #231516 from benwbooth/jbrowseSandro1-0/+39
jbrowse: init at 2.5.0
2023-05-14python310Packages.scikit-image: rename from scikitimageMartin Weinelt1-1/+1
to match the pname and create an alias for the former name.
2023-05-13antiprism: 0.29 -> 0.30R. Ryantm1-2/+2
2023-05-13eigenmath: unstable-2023-04-07 -> unstable-2023-05-12Nick Cao1-3/+3
2023-05-13Merge pull request #231413 from pmiddend/crystfel-dependencies-updateNick Cao1-7/+7
crystfel: update dependencies
generated by cgit-pink 1.4.1 (git 2.36.1) at 2024-07-02 20:55:30 +0000