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2023-10-28Merge pull request #262697 from natsukium/dssp/updateOTABI Tomoya1-2/+11
dssp: 4.4.3 -> 4.4.4.1; libcifpp: 5.2.1 -> 5.2.2
2023-10-28Merge pull request #261508 from r-ryantm/auto-update/raxmlWeijia Wang1-2/+2
raxml: 8.2.12 -> 8.2.13
2023-10-27cp2k: allow fortran argument mismatchesPhillip Seeber1-1/+2
2023-10-27eigenmath: unstable-2023-08-03 -> unstable-2023-10-26R. Ryantm1-3/+3
2023-10-25Merge pull request #263313 from r-ryantm/auto-update/dellyNick Cao1-2/+2
delly: 1.1.7 -> 1.1.8
2023-10-25delly: 1.1.7 -> 1.1.8R. Ryantm1-2/+2
2023-10-24Merge pull request #263067 from r-ryantm/auto-update/xschemFabián Heredia Montiel1-2/+2
xschem: 3.1.0 -> 3.4.4
2023-10-24Merge pull request #263037 from r-ryantm/auto-update/wxmaximaDoron Behar1-2/+2
wxmaxima: 23.02.1 -> 23.10.0
2023-10-24Merge pull request #260097 from Et7f3/fix_calc_darwinWeijia Wang1-1/+1
calc: fix substituteInPlace call
2023-10-24xschem: 3.1.0 -> 3.4.4R. Ryantm1-2/+2
2023-10-24Merge pull request #262899 from vbgl/proverif-2.05Weijia Wang1-2/+2
proverif: 2.04 → 2.05
2023-10-23wxmaxima: 23.02.1 -> 23.10.0R. Ryantm1-2/+2
2023-10-23proverif: 2.04 → 2.05Vincent Laporte1-2/+2
2023-10-23verilator: 5.012 -> 5.016R. Ryantm1-2/+2
2023-10-23Merge pull request #261588 from wegank/geda-xornWeijia Wang1-2/+10
geda: drop xorn
2023-10-22dssp: 4.4.3 -> 4.4.4.1natsukium1-2/+11
Diff: https://github.com/PDB-REDO/dssp/compare/refs/tags/v4.4.3...v4.4.4.1 Changelog: https://github.com/PDB-REDO/libcifpp/releases/tag/refs/tags/v4.4.4.1
2023-10-22gnuastro: 0.20 -> 0.21R. Ryantm1-2/+2
2023-10-21Merge master into staging-nextgithub-actions[bot]1-8/+44
2023-10-21Merge pull request #227090 from natsukium/bowtie2/aarch64OTABI Tomoya1-8/+44
bowtie2: fix build on aarch64
2023-10-21Merge master into staging-nextgithub-actions[bot]4-2/+2
2023-10-20Merge pull request #262351 from h7x4/remove-nix-exec-bitsDmitry Kalinkin3-0/+0
treewide: remove execute bit for non-executable `*.nix` files
2023-10-20root: 6.28.06 -> 6.28.08R. Ryantm1-2/+2
2023-10-20Merge master into staging-nextgithub-actions[bot]1-2/+2
2023-10-20treewide: remove execute bit for non-executable `*.nix` filesh7x43-0/+0
2023-10-20Merge pull request #262290 from collares/sage-matplotlib-3.8Mauricio Collares2-0/+10
[staging-next] sage, rpy2: test fixes
2023-10-20Merge pull request #262252 from r-ryantm/auto-update/gromacsmarkuskowa1-2/+2
gromacs: 2023.2 -> 2023.3
2023-10-20sage: add nbclassic dependencyMauricio Collares1-0/+3
2023-10-20Merge master into staging-nextgithub-actions[bot]1-0/+50
2023-10-20gromacs: 2023.2 -> 2023.3R. Ryantm1-2/+2
2023-10-20Merge pull request #249750 from natsukium/bioawk/initOTABI Tomoya1-0/+50
bioawk: init at unstable-2017-09-11
2023-10-20bowtie2: enable testsnatsukium1-0/+16
2023-10-20bowtie2: fix build on aarch64natsukium1-2/+12
2023-10-20bowtie2: refactornatsukium1-6/+16
2023-10-19Merge master into staging-nextgithub-actions[bot]2-5/+5
2023-10-19Merge pull request #262058 from sheepforce/openmolcasmarkuskowa1-3/+3
openmolcas: 23.06 -> 23.10
2023-10-19openmolcas: 23.06 -> 23.10Phillip Seeber1-3/+3
2023-10-19alt-ergo: 2.5.1 -> 2.5.2R. Ryantm1-2/+2
2023-10-19Merge master into staging-nextgithub-actions[bot]2-48/+69
2023-10-19Merge pull request #250633 from jue89/add-horizonpyWeijia Wang2-48/+69
python311Packages.horizon-eda: init at 2.5.0
2023-10-19python311Packages.horizon-eda: init at 2.5.0Juergen Fitschen2-48/+69
2023-10-18horizon-eda: clarify package licenseJuergen Fitschen1-1/+1
Source: https://github.com/horizon-eda/horizon/blob/v2.5.0/org.horizon_eda.HorizonEDA.metainfo.xml#L6
2023-10-18Merge master into staging-nextgithub-actions[bot]1-2/+2
2023-10-17Merge pull request #260244 from r-ryantm/auto-update/kstarsWeijia Wang1-2/+2
kstars: 3.6.6 -> 3.6.7
2023-10-17Merge master into staging-nextgithub-actions[bot]1-2/+2
2023-10-17nvc: 1.10.3 -> 1.10.4R. Ryantm1-2/+2
2023-10-17geda: drop xornWeijia Wang1-2/+10
2023-10-17Merge master into staging-nextgithub-actions[bot]1-10/+16
2023-10-17Merge pull request #261506 from wegank/tulip-bumpWeijia Wang1-10/+16
tulip: 5.6.1 -> 5.7.2
2023-10-16raxml: 8.2.12 -> 8.2.13R. Ryantm1-2/+2
2023-10-17tulip: 5.6.1 -> 5.7.2Weijia Wang1-10/+16
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