Age | Commit message (Collapse) | Author | Files | Lines | |
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2023-11-30 | Merge pull request #186462 from apraga/bio-bigfile-1.07 | Doron Behar | 3 | -0/+118 | |
bio-bigfile: init 1.07 | |||||
2023-11-21 | perlPackages.BioBigFile: Addressing reviewer change | Alexis Praga | 2 | -7/+32 | |
2023-11-21 | perlPackages.BioBigfile: init at 1.07 | Alexis Praga | 2 | -0/+93 | |
Perl interface to manipulate BigWig and BigBeg files (for genomics) This will be used to package VEP : uttps://www.ensembl.org/info/docs/tools/vep/script/vep_download.html For that, only kent version 335 works at the moment. For this commit, 2 commits for kent are needed - e027a5d8368a053e231 : packaging kent header - 2b2c6f4c287c6107acb : enabling patches in kent | |||||
2023-11-21 | perlPackages.Hailo: fix tests | Stig Palmquist | 1 | -0/+28 | |
Add patch to tests that fixes compat with Getopt-Long-Description 0.106 | |||||
2023-11-18 | perl538Packages.CSSDOM: fix test | tu-maurice | 1 | -0/+1412 | |
t/css-dom.t was deactivated because it failed due to deprecated syntax. This commit uses an upstream patch to fix the syntax and activate the test again. | |||||
2023-11-03 | perlPackages.Gtk2: fix build with clang 16 | Randy Eckenrode | 1 | -0/+86 | |
Fix pointer casts to 32-bit integers. | |||||
2023-11-03 | Merge pull request #265043 from stigtsp/perl/mousex-getopts-fix-gld | Stig | 1 | -0/+143 | |
[staging-next] perlPackages.MouseXGetopt: add patch | |||||
2023-11-02 | perlPackages.MouseXGetopt: add patch | Stig Palmquist | 1 | -0/+143 | |
Adds patch to test suite to make it compatible with Getopt-Long-Descriptive >= 0.106 | |||||
2023-11-02 | perlPackages.XMLLibXML: fix darwin build | Stig Palmquist | 1 | -0/+47 | |
2023-10-28 | perlPackages.IOTty: Fix build on Darwin | Tae Selene Sandoval Murgan | 1 | -0/+13 | |
Co-authored-by: Stig <git@stig.io> | |||||
2023-10-26 | Merge branch 'staging-next' into perl-updates | Stig Palmquist | 3 | -1/+55 | |
2023-10-26 | Merge branch 'staging' into staging-next | Vladimír Čunát | 1 | -1/+1 | |
2023-10-23 | perlPackages.ArchiveLibarchive: init at 0.08 | TomaSajt | 1 | -0/+25 | |
2023-10-23 | perlPackages.AlienFFI: init at 0.27 | TomaSajt | 1 | -0/+29 | |
2023-10-23 | perlPackages.Paranoid: fix patch | Stig Palmquist | 1 | -17/+16 | |
2023-10-23 | perlPackages.MHonArc: remove merged patch | Stig Palmquist | 1 | -26/+0 | |
2023-10-23 | perlPackages.LWPProtocolHttps: update patch for NIX_SSL_CERT_FILE | Stig Palmquist | 1 | -26/+9 | |
Update patch that supports NIX_SSL_CERT_FILE env variable so it's compatible with LWP::Protocol::https 6.11 The new patch does not handle SSL_CERT_FILE or default cert store paths as this is managed by IO::Socket::SSL. | |||||
2023-10-04 | treewide: refactor `.attrs.sh` detection | Maximilian Bosch | 1 | -1/+1 | |
When specifying the `builder` attribute in `stdenv.mkDerivation`, this will be effectively transformed into builtins.derivation { builder = stdenv.shell; args = [ "-e" builder ]; } This also means that `default-builder.sh` is never sourced and as a result it's not guaranteed that `$NIX_ATTRS_SH_FILE` is set to a correct location[1]. Also, we need to source `.attrs.sh` to source `$stdenv`. So, the following is done now: * If `$NIX_ATTRS_SH_FILE` points to a correct location, then use it. Directly using `.attrs.sh` is problematic for `nix-shell(1)` usage (see previous commit for more context), so prefer the environment variable if possible. * Otherwise, if `.attrs.sh` exists, then use it. See [1] for when this can happen. * If neither applies, it can be assumed that `__structuredAttrs` is turned off and thus nothing needs to be done. [1] It's possible that it doesn't exist at all - in case of Nix 2.3 or it can point to a wrong location on older Nix versions with a bug in `__structuredAttrs`. | |||||
2023-09-21 | Merge pull request #256402 from puckipedia/fix-frozen-bubble | Stig | 1 | -0/+64 | |
perlPackages.SDL: fix on perl >= 5.38.0 | |||||
2023-09-21 | perlPackages.SDL: import patch | Puck Meerburg | 1 | -0/+64 | |
2023-09-06 | perlPackages.Tk: fix build with clang 16 | Randy Eckenrode | 1 | -0/+11 | |
The jpeg `configure` script fails to detect clang as a functioning C compiler because it uses a test with a `main` that returns an implicit `int`, which results in an error with clang 16. | |||||
2023-08-02 | Merge #246585: Fix perlPackages breakage | Vladimír Čunát | 3 | -0/+77 | |
...into staging-next | |||||
2023-08-01 | perlPackages.ExtUtilsConstant: add patch for failing test | Stig Palmquist | 1 | -0/+31 | |
2023-08-01 | perlPackages.ExceptionBase: add patch for perl 5.38.0 | Stig Palmquist | 1 | -0/+20 | |
2023-08-01 | perlPackages.DataClone: add patch for perl 5.38.0 | Stig Palmquist | 1 | -0/+26 | |
2023-07-24 | perlPackages.DataUUID: Add patch for CVE-2013-4184 | Stig Palmquist | 1 | -0/+214 | |
2023-06-22 | perlPackages.Po4a: disable tests on darwin | Theodore Ni | 1 | -1/+3 | |
2023-06-03 | strip-nondeterminism: fix zip handler | Artturin | 1 | -2/+1 | |
https://salsa.debian.org/reproducible-builds/strip-nondeterminism/-/blob/master/lib/File/StripNondeterminism/handlers/zip.pm#L29 it was working on linux because the tests are run on linux | |||||
2023-06-01 | perlPackages.TextBibTeX: always install libbtparse.so to /lib instead of /lib64 | Nick Cao | 1 | -1/+1 | |
2023-04-19 | Merge pull request #224107 from Artturin/perl-use-mkscopewithsplicing | Artturi | 1 | -3/+3 | |
2023-04-11 | perlPackages: use makeScopeWithSplicing | Artturin | 1 | -3/+3 | |
2023-03-26 | Merge staging-next into staging | github-actions[bot] | 1 | -0/+12 | |
2023-03-26 | Merge staging-next into staging | github-actions[bot] | 1 | -0/+12 | |
2023-03-26 | perl536Packages.Po4a: remove texlive dependency | apfelkuchen06 | 1 | -3/+11 | |
The motivation behind this is wanting to reduce the reverse closure size of texlive. When internationalizing tex files, Po4a attempts to follow included files. In order to find the correct files, po4a uses texlive's file-finding utility kpsewhich. This commit replaces texlive with a tiny shell script, which is precisely good enough to run the tests. This does not change the resulting package in any way, it only affects how the test is run. | |||||
2023-03-26 | perlPackages.CatalystAuthenticationStoreHtpasswd: add patch to avoid DES ↵ | Stig Palmquist | 1 | -0/+12 | |
encrypted passwords in tests | |||||
2023-03-25 | perlPackages.Plack: add patch to avoid DES encrypted passwords in tests | Stig Palmquist | 1 | -0/+12 | |
2023-03-02 | Merge pull request #218503 from Artturin/strictdeps4 | Artturi | 1 | -3/+5 | |
2023-02-25 | perlPackages.Po4a: enable strictDeps | Artturin | 1 | -3/+5 | |
2023-02-14 | strip-nondeterminism: fix binary functioning on darwin | Artturin | 1 | -3/+11 | |
result/bin/strip-nondeterminism: bad interpreter: /nix/store/mym5b5zbzgny17ixqr8kgwmndc3k4y2r-perl-5.36.0/bin/perl -I/nix/store/mym5b5zbzgny17ixqr8kgwmndc3k4y2r-perl-5.36.0/lib: exec format error | |||||
2023-02-09 | Merge pull request #215488 from alyssais/strip-nondeterminism-1.13.1 | Artturi | 1 | -2/+2 | |
strip-nondeterminism: fix build | |||||
2023-02-09 | strip-nondeterminism: 1.13.0 -> 1.13.1 | Alyssa Ross | 1 | -2/+2 | |
Fixes build. | |||||
2023-02-06 | ham: 2020-09-09 -> 2022-10-26 | Andreas Wiese | 1 | -8/+16 | |
2023-01-21 | treewide: switch to nativeCheckInputs | Guillaume Girol | 1 | -1/+1 | |
checkInputs used to be added to nativeBuildInputs. Now we have nativeCheckInputs to do that instead. Doing this treewide change allows to keep hashes identical to before the introduction of nativeCheckInputs. | |||||
2023-01-09 | Merge master into staging-next | github-actions[bot] | 1 | -14/+35 | |
2023-01-09 | strip-nondeterminism: 1.0.0 -> 1.13.0 | Artturin | 1 | -14/+35 | |
https://salsa.debian.org/reproducible-builds/strip-nondeterminism/-/tags/1.13.0 move shortenPerlShebang to postBuild to fix tests | |||||
2022-12-08 | treewide: source .attrs in builders | Artturin | 1 | -3/+1 | |
if theres a source $stdenv then this is needed for structuredAttrs | |||||
2022-12-08 | treewide: fix some core package structuredAttrs | Artturin | 2 | -3/+9 | |
2022-10-22 | Merge pull request #186464 from apraga/bioextalign-1.5.1 | Sandro | 2 | -0/+49 | |
2022-10-20 | bioextalign: init at 1.5.1 | Alexis Praga | 2 | -0/+49 | |
Part of BioPerl Extensions (BioPerl-Ext) distribution, a collection of Bioperl C-compiled extensions. These are no longer maintained but needed for Ensembl-VEP (annotation for genomics). Co-authored-by: Sandro <sandro.jaeckel@gmail.com> | |||||
2022-10-02 | Merge master into staging-next | github-actions[bot] | 1 | -13/+0 | |