mirror/nixpkgs - Nix packages collection

Age	Commit message (Collapse)	Author	Files	Lines
2021-09-24	rPackages: mark packages as broken when generating package sets	Justin Bedo	1	-0/+12
	The current behaviour for generate-r-packages.R is to delete packages that have been remove upstream. This patch changes the behaviour to mark packages as broken rather than removing them. This has the advantage of never breaking expressions, which previously occured when a package with overrides in default.nix was deleted. As a result, the update procedure is simplified, allowing automated updates to the package tree to run, and additionally if a package is re-established upstream the previous overrides still exist.
2021-09-16	Merge pull request #127790 from PhDyellow/r_bioc_updater_revised	Justin Bedő	1	-1/+8
	r-modules: R bioc updater revised
2021-09-15	rPackages: autoset bioconductor ver to match R ver	Phil Dyer	1	-1/+8
	BioConductor releases are tied to specific R releases. Updating the package set now automatically selects the correct version of bioconductor to match the current version of R.
2021-08-24	r-modules: fix r package build failures	Phil Dyer	1	-2/+1
	r-modules: fix r package system dependencies r-modules: fix terra package dependencies r-modules: fix edge case for R package import The R package "import" has a name that clashes with the nix function "import". The package name in nixpkgs is correctly modified to avoid the clash, but the name of the R package was also being changed in cran-packages.nix, which broke downloading of the package. cran-packages.nix has been manually patched, and genreate-r-packages.R has been fixed so future automatic updates will succeed. r-modules: fix repeated `pkgs.` and svglite
2021-05-06	bump bioc in generate-r-packages	Jake Gillberg	1	-1/+1

2021-01-02	r-modules: update cran and bioc packages	Tikhon Jelvis	1	-2/+6
	The last snapshot was 4 months ago (2020-08-19). I also found that I needed newer definitions when I was trying to fix the R arrow package. This update required a couple of manual changes: 1. Removing a few deleted packages from default.nix 2. Renaming the "assert" package to "r_assert" in generate-r-packages.R because "assert" is a keyword in Nix
2020-08-20	r-modules: bioc and cran update	Justin Bedo	1	-1/+1

2018-07-07	R: update package set	Peter Simons	1	-1/+1
	The CRAN snapshot is at "2018-07-03". Bioc is now at 3.8.
2018-02-21	bioconductor: 3.4 -> 3.6	Justin Bedo	1	-5/+5

2017-03-07	r-modules: drop broken irkernel package set	Peter Simons	1	-1/+0
	We can no longer update that package set since, apparently, it has moved to a different packaging scheme.
2017-02-24	R: 3.2.4 -> 3.3.2	Justin Bedo	1	-3/+7

2016-03-22	r-modules: update CRAN, add Bioconductor data pkgs	Jeffrey David Johnson	1	-15/+33

2015-11-25	r-modules: use HTTPS, allow passing args from generated set, use MRAN	Nikolay Amiantov	1	-9/+17

2015-10-30	r-modules: init IRkernel packages	Asko Soukka	1	-2/+2

2015-06-17	R: improve support for CRAN and Bioconductor package sets	Peter Simons	1	-17/+24
	- Update the instructions for re-generating each of the package set files. - Provide test-evaluation.nix expression to verify that the package sets evaluates. - Update list of known broken packages.
2015-06-17	R: add support for Bioconductor packages	Jeffrey David Johnson	1	-0/+54