blob: 153f85535f943fa12802610005ec0314280ceb9f (
plain) (
blame)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
|
{ lib, python311, fetchpatch, fetchPypi }:
# pin python311 because macs2 does not support python 3.12
# https://github.com/macs3-project/MACS/issues/598#issuecomment-1812622572
python311.pkgs.buildPythonPackage rec {
pname = "macs2";
version = "2.2.9.1";
pyproject = true;
src = fetchPypi {
pname = lib.toUpper pname;
inherit version;
hash = "sha256-jVa8N/uCP8Y4fXgTjOloQFxUoKjNl3ZoJwX9CYMlLRY=";
};
patches = [
# https://github.com/macs3-project/MACS/pull/590
(fetchpatch {
name = "remove-pip-build-dependency.patch";
url = "https://github.com/macs3-project/MACS/commit/cf95a930daccf9f16e5b9a9224c5a2670cf67939.patch";
hash = "sha256-WB3Ubqk5fKtZt97QYo/sZDU/yya9MUo1NL4VsKXR+Yo=";
})
];
build-system = with python311.pkgs; [
cython_0
numpy
setuptools
];
dependencies = with python311.pkgs; [
numpy
];
__darwinAllowLocalNetworking = true;
nativeCheckInputs = with python311.pkgs; [
unittestCheckHook
];
unittestFlagsArray = [
"-s"
"test"
];
pythonImportsCheck = [ "MACS2" ];
meta = with lib; {
description = "Model-based Analysis for ChIP-Seq";
mainProgram = "macs2";
homepage = "https://github.com/macs3-project/MACS/";
changelog = "https://github.com/macs3-project/MACS/releases/tag/v${version}";
license = licenses.bsd3;
maintainers = with maintainers; [ gschwartz ];
};
}
|