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{ lib, stdenv, fetchFromGitHub, zlib }:
stdenv.mkDerivation rec {
pname = "minimap2";
version = "2.28";
src = fetchFromGitHub {
repo = pname;
owner = "lh3";
rev = "v${version}";
sha256 = "sha256-cBl2BKgPCP/xHZW6fTH51cY9/lV/1HVLsN7a1R1Blv4=";
};
buildInputs = [ zlib ];
makeFlags = lib.optionals stdenv.isAarch64 [ "arm_neon=1" "aarch64=1" ];
installPhase = ''
mkdir -p $out/bin
cp minimap2 $out/bin
mkdir -p $out/share/man/man1
cp minimap2.1 $out/share/man/man1
'';
meta = with lib; {
description = "A versatile pairwise aligner for genomic and spliced nucleotide sequences";
mainProgram = "minimap2";
homepage = "https://lh3.github.io/minimap2";
license = licenses.mit;
platforms = platforms.all;
maintainers = [ maintainers.arcadio ];
};
}
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