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{
lib,
stdenv,
fetchFromGitHub,
fetchpatch,
cmake,
pkg-config,
bzip2,
libxml2,
swig,
}:
stdenv.mkDerivation (attrs: {
pname = "libsbml";
version = "5.20.2";
src = fetchFromGitHub {
owner = "sbmlteam";
repo = "libsbml";
rev = "v${attrs.version}";
hash = "sha256-8JT2r0zuf61VewtZaOAccaOUmDlQPnllA0fXE9rT5X8=";
};
patches = [
# This should be in next release, remember to remove fetchpatch
(fetchpatch {
name = "fix-xmlerror-conversion.patch";
url = "https://github.com/sbmlteam/libsbml/pull/358.patch";
hash = "sha256-uirG6XJ+w0hqBUEAGDnzhHoVtJVRdN1eqBYeneKMBao=";
})
];
nativeBuildInputs = [
cmake
pkg-config
swig
];
buildInputs = [
bzip2.dev
libxml2
];
# libSBML doesn't always make use of pkg-config
cmakeFlags = [
"-DLIBXML_INCLUDE_DIR=${lib.getDev libxml2}/include/libxml2"
"-DLIBXML_LIBRARY=${lib.getLib libxml2}/lib/libxml2${stdenv.hostPlatform.extensions.sharedLibrary}"
"-DPKG_CONFIG_EXECUTABLE=${lib.getBin pkg-config}/bin/pkg-config"
"-DSWIG_EXECUTABLE=${lib.getBin swig}/bin/swig"
];
meta = with lib; {
description = "Library for manipulating Systems Biology Markup Language (SBML)";
homepage = "https://github.com/sbmlteam/libsbml";
license = licenses.lgpl21Only;
maintainers = [maintainers.kupac];
platforms = platforms.all;
};
})
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