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{
lib,
stdenv,
fetchzip,
cctools,
gfortran,
python3,
blas,
lapack,
mpiSupport ? true,
mpi, # generic mpi dependency
openssh, # required for openmpi tests
petsc-withp4est ? false,
hdf5-support ? false,
hdf5,
metis,
parmetis,
withParmetis ? false,
pkg-config,
p4est,
zlib, # propagated by p4est but required by petsc
petsc-optimized ? false,
petsc-scalar-type ? "real",
petsc-precision ? "double",
}:
# This version of PETSc does not support a non-MPI p4est build
assert petsc-withp4est -> p4est.mpiSupport;
stdenv.mkDerivation rec {
pname = "petsc";
version = "3.21.3";
src = fetchzip {
url = "https://web.cels.anl.gov/projects/petsc/download/release-snapshots/petsc-${version}.tar.gz";
hash = "sha256-dxHa8JUJCN4zRIXMCx7gcvbzFH2SPtkJ377ssIevjgU=";
};
strictDeps = true;
nativeBuildInputs = [
python3
gfortran
pkg-config
] ++ lib.optional mpiSupport mpi ++ lib.optional (mpiSupport && mpi.pname == "openmpi") openssh;
buildInputs = [
blas
lapack
] ++ lib.optional hdf5-support hdf5 ++ lib.optional petsc-withp4est p4est ++ lib.optionals withParmetis [ metis parmetis ];
prePatch = lib.optionalString stdenv.isDarwin ''
substituteInPlace config/install.py \
--replace /usr/bin/install_name_tool ${cctools}/bin/install_name_tool
'';
# Both OpenMPI and MPICH get confused by the sandbox environment and spew errors like this (both to stdout and stderr):
# [hwloc/linux] failed to find sysfs cpu topology directory, aborting linux discovery.
# [1684747490.391106] [localhost:14258:0] tcp_iface.c:837 UCX ERROR opendir(/sys/class/net) failed: No such file or directory
# These messages contaminate test output, which makes the quicktest suite to fail. The patch adds filtering for these messages.
patches = [ ./filter_mpi_warnings.patch ];
configureFlags = [
"--with-blas=1"
"--with-lapack=1"
"--with-scalar-type=${petsc-scalar-type}"
"--with-precision=${petsc-precision}"
"--with-mpi=${if mpiSupport then "1" else "0"}"
] ++ lib.optionals mpiSupport [
"--CC=mpicc"
"--with-cxx=mpicxx"
"--with-fc=mpif90"
] ++ lib.optionals (mpiSupport && withParmetis) [
"--with-metis=1"
"--with-metis-dir=${metis}"
"--with-parmetis=1"
"--with-parmetis-dir=${parmetis}"
] ++ lib.optionals petsc-optimized [
"--with-debugging=0"
"COPTFLAGS=-O3"
"FOPTFLAGS=-O3"
"CXXOPTFLAGS=-O3"
"CXXFLAGS=-O3"
];
preConfigure = ''
patchShebangs ./lib/petsc/bin
'' + lib.optionalString petsc-withp4est ''
configureFlagsArray+=(
"--with-p4est=1"
"--with-zlib-include=${zlib.dev}/include"
"--with-zlib-lib=-L${zlib}/lib -lz"
)
'' + lib.optionalString hdf5-support ''
configureFlagsArray+=(
"--with-hdf5=1"
"--with-hdf5-fortran-bindings=1"
"--with-hdf5-include=${hdf5.dev}/include"
"--with-hdf5-lib=-L${hdf5}/lib -lhdf5"
)
'';
hardeningDisable = lib.optionals (!petsc-optimized) [
"fortify"
"fortify3"
];
configureScript = "python ./configure";
enableParallelBuilding = true;
# This is needed as the checks need to compile and link the test cases with
# -lpetsc, which is not available in the checkPhase, which is executed before
# the installPhase. The installCheckPhase comes after the installPhase, so
# the library is installed and available.
doInstallCheck = true;
installCheckTarget = "check_install";
passthru = {
inherit mpiSupport;
};
meta = with lib; {
description = "Portable Extensible Toolkit for Scientific computation";
homepage = "https://petsc.org/release/";
license = licenses.bsd2;
maintainers = with maintainers; [ cburstedde ];
};
}
|
