blob: 9a60ee499a6455713658bb626955e973549e18b3 (
plain) (
blame)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
|
{
lib,
stdenv,
fetchurl,
zlib,
bzip2,
cmake,
python3,
}:
stdenv.mkDerivation (finalAttrs: {
pname = "spades";
version = "3.15.5";
src = fetchurl {
url = "https://github.com/ablab/spades/releases/download/v${finalAttrs.version}/SPAdes-${finalAttrs.version}.tar.gz";
hash = "sha256-FVw2QNVx8uexmgUDHR/Q0ZvYLfeF04hw+5O9JBsSu/o=";
};
sourceRoot = "SPAdes-${finalAttrs.version}/src";
env.CXXFLAGS = toString [
# GCC 13: error: 'uint32_t' does not name a type
"-include cstdint"
];
nativeBuildInputs = [ cmake ];
buildInputs = [
zlib
bzip2
python3
];
doCheck = true;
meta = {
description = "St. Petersburg genome assembler, a toolkit for assembling and analyzing sequencing data";
license = lib.licenses.gpl2Only;
homepage = "http://ablab.github.io/spades";
platforms = [
"x86_64-linux"
"x86_64-darwin"
];
maintainers = with lib.maintainers; [ bzizou ];
};
})
|
