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{ lib
, stdenv
, fetchFromGitHub
, cmake
, enableVTK ? true
, vtk
, ApplicationServices
, Cocoa
, DarwinTools # sw_vers
, libiconv
, enablePython ? false
, python ? null
, swig
, expat
, libuuid
, openjpeg
, zlib
, pkg-config
}:
stdenv.mkDerivation rec {
pname = "gdcm";
version = "3.0.24";
src = fetchFromGitHub {
owner = "malaterre";
repo = "GDCM";
rev = "refs/tags/v${version}";
hash = "sha256-Zlb6UCP4aFZOJJNhFQBBrwzst+f37gs1zaCBMTOUgZE=";
};
cmakeFlags = [
"-DGDCM_BUILD_APPLICATIONS=ON"
"-DGDCM_BUILD_SHARED_LIBS=ON"
"-DGDCM_BUILD_TESTING=ON"
"-DGDCM_USE_SYSTEM_EXPAT=ON"
"-DGDCM_USE_SYSTEM_ZLIB=ON"
"-DGDCM_USE_SYSTEM_UUID=ON"
"-DGDCM_USE_SYSTEM_OPENJPEG=ON"
# hack around usual "`RUNTIME_DESTINATION` must not be an absolute path" issue:
"-DCMAKE_INSTALL_LIBDIR=lib"
"-DCMAKE_INSTALL_BINDIR=bin"
"-DCMAKE_INSTALL_INCLUDEDIR=include"
] ++ lib.optionals enableVTK [
"-DGDCM_USE_VTK=ON"
] ++ lib.optionals enablePython [
"-DGDCM_WRAP_PYTHON:BOOL=ON"
"-DGDCM_INSTALL_PYTHONMODULE_DIR=${placeholder "out"}/${python.sitePackages}"
];
nativeBuildInputs = [
cmake
pkg-config
] ++ lib.optional stdenv.hostPlatform.isDarwin DarwinTools;
buildInputs = [
expat
libuuid
openjpeg
zlib
] ++ lib.optionals enableVTK [
vtk
] ++ lib.optionals stdenv.hostPlatform.isDarwin [
ApplicationServices
Cocoa
libiconv
] ++ lib.optionals enablePython [ swig python ];
disabledTests = [
# require networking:
"TestEcho"
"TestFind"
"gdcmscu-echo-dicomserver"
"gdcmscu-find-dicomserver"
# seemingly ought to be disabled when the test data submodule is not present:
"TestvtkGDCMImageReader2_3"
"TestSCUValidation"
# errors because 3 classes not wrapped:
"TestWrapPython"
] ++ lib.optionals (stdenv.hostPlatform.isAarch64 && stdenv.hostPlatform.isLinux) [
"TestRescaler2"
];
checkPhase = ''
runHook preCheck
ctest --exclude-regex '^(${lib.concatStringsSep "|" disabledTests})$'
runHook postCheck
'';
doCheck = true;
# note that when the test data is available to the build via `fetchSubmodules = true`,
# a number of additional but much slower tests are enabled
meta = with lib; {
description = "Grassroots cross-platform DICOM implementation";
longDescription = ''
Grassroots DICOM (GDCM) is an implementation of the DICOM standard designed to be open source so that researchers may access clinical data directly.
GDCM includes a file format definition and a network communications protocol, both of which should be extended to provide a full set of tools for a researcher or small medical imaging vendor to interface with an existing medical database.
'';
homepage = "https://gdcm.sourceforge.net/";
license = with licenses; [ bsd3 asl20 ];
maintainers = with maintainers; [ tfmoraes ];
platforms = platforms.all;
};
}
|
