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{ lib
, buildPythonPackage
, fetchPypi
, pythonOlder
, setuptools
, numpy
}:
buildPythonPackage rec {
pname = "biopython";
version = "1.83";
pyproject = true;
disabled = pythonOlder "3.9";
src = fetchPypi {
inherit pname version;
hash = "sha256-eOa/t43mMDQDev01/nfLbgqeW2Jwa+z3in2SKxbtg/c=";
};
nativeBuildInputs = [
setuptools
];
propagatedBuildInputs = [ numpy ];
pythonImportsCheck = [
"Bio"
];
checkPhase = ''
runHook preCheck
export HOME=$(mktemp -d)
cd Tests
python run_tests.py --offline
runHook postCheck
'';
meta = {
description = "Python library for bioinformatics";
longDescription = ''
Biopython is a set of freely available tools for biological computation
written in Python by an international team of developers. It is a
distributed collaborative effort to develop Python libraries and
applications which address the needs of current and future work in
bioinformatics.
'';
homepage = "https://biopython.org/wiki/Documentation";
maintainers = with lib.maintainers; [ luispedro ];
license = lib.licenses.bsd3;
};
}
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