blob: 2ec814f56aef0b47b10901f193f22840bd66ee49 (
plain) (
blame)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
|
{ lib
, buildPythonPackage
, fetchPypi
, pythonOlder
, setuptools
, numpy
}:
buildPythonPackage rec {
pname = "biopython";
version = "1.83";
pyproject = true;
disabled = pythonOlder "3.9";
src = fetchPypi {
inherit pname version;
hash = "sha256-eOa/t43mMDQDev01/nfLbgqeW2Jwa+z3in2SKxbtg/c=";
};
nativeBuildInputs = [
setuptools
];
propagatedBuildInputs = [ numpy ];
pythonImportsCheck = [
"Bio"
];
checkPhase = ''
runHook preCheck
export HOME=$(mktemp -d)
cd Tests
python run_tests.py --offline
runHook postCheck
'';
meta = {
description = "Python library for bioinformatics";
longDescription = ''
Biopython is a set of freely available tools for biological computation
written in Python by an international team of developers. It is a
distributed collaborative effort to develop Python libraries and
applications which address the needs of current and future work in
bioinformatics.
'';
homepage = "https://biopython.org/wiki/Documentation";
maintainers = with lib.maintainers; [ luispedro ];
license = lib.licenses.bsd3;
};
}
|
