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{ lib
, stdenv
, buildPythonPackage
, fetchFromGitHub
, cmake
, cython
, oldest-supported-numpy
, scikit-build
, setuptools
, tbb
, numpy
, rowan
, scipy
, pytest
, gsd
, matplotlib
, sympy
}:
buildPythonPackage rec {
pname = "freud";
version = "3.1.0";
pyproject = true;
src = fetchFromGitHub {
owner = "glotzerlab";
repo = "freud";
rev = "refs/tags/v${version}";
hash = "sha256-jlscEHQ1q4oqxE06NhVWCOlPRcjDcJVrvy4h6iYrkz0=";
fetchSubmodules = true;
};
# Because we prefer to not `leaveDotGit`, we need to fool upstream into
# thinking we left the .git files in the submodules, so cmake won't think we
# didn't initialize them. Upstream doesn't support using the system wide
# installed version of these libraries, and it's probably aint's worth the
# hassle, because upstream also doesn't distribute all of these dependencies'
# libraries, and probably it uses only what it needs.
preConfigure = ''
touch extern/{voro++,fsph,Eigen}/.git
'';
nativeBuildInputs = [
cmake
cython
oldest-supported-numpy
scikit-build
setuptools
];
dontUseCmakeConfigure = true;
buildInputs = [
tbb
];
propagatedBuildInputs = [
numpy
rowan
scipy
];
nativeCheckInputs = [
# Encountering circular ImportError issues with pytestCheckHook, see also:
# https://github.com/NixOS/nixpkgs/issues/255262
pytest
gsd
matplotlib
sympy
];
checkPhase = ''
runHook preCheck
pytest
runHook postCheck
'';
# Some tests fail on aarch64. If we could have used pytestCheckHook, we would
# have disabled only the tests that fail with the disabledTests attribute.
# But that is not possible unfortunately. See upstream report for the
# failure: https://github.com/glotzerlab/freud/issues/961
doCheck = !stdenv.isAarch64;
pythonImportsCheck = [ "freud" ];
meta = with lib; {
description = "Powerful, efficient particle trajectory analysis in scientific Python";
homepage = "https://github.com/glotzerlab/freud";
changelog = "https://github.com/glotzerlab/freud/blob/${src.rev}/ChangeLog.md";
license = licenses.bsd3;
maintainers = with maintainers; [ doronbehar ];
};
}
|
