1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
|
{
lib,
stdenv,
buildPythonPackage,
fetchFromGitHub,
pythonOlder,
pytestCheckHook,
setuptools,
numpy,
scipy,
six,
paramz,
matplotlib,
cython,
}:
buildPythonPackage rec {
pname = "gpy";
version = "1.13.2";
pyproject = true;
disabled = pythonOlder "3.9";
src = fetchFromGitHub {
owner = "SheffieldML";
repo = "GPy";
rev = "refs/tags/v${version}";
hash = "sha256-kggXePDKJcgw8qwLIBTxbwhiLw2H4dkx7082FguKP0Y=";
};
pythonRelaxDeps = [
"paramz"
"scipy"
];
nativeBuildInputs = [ setuptools ];
buildInputs = [ cython ];
propagatedBuildInputs = [
numpy
scipy
six
paramz
matplotlib
];
nativeCheckInputs = [ pytestCheckHook ];
# Rebuild cython-generated .c files to ensure compatibility
preBuild = ''
for fn in $(find . -name '*.pyx'); do
echo $fn | sed 's/\.\.pyx$/\.c/' | xargs ${cython}/bin/cython -3
done
'';
disabledTests = lib.optionals (stdenv.isDarwin && stdenv.hostPlatform.isx86_64) [
# Rounding difference break comparison
"TestGradientMultiOutputGPModel"
];
pythonImportsCheck = [ "GPy" ];
meta = with lib; {
description = "Gaussian process framework in Python";
homepage = "https://sheffieldml.github.io/GPy";
changelog = "https://github.com/SheffieldML/GPy/releases/tag/v${version}";
license = licenses.bsd3;
maintainers = with maintainers; [ bcdarwin ];
};
}
|
