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{
lib,
buildPythonPackage,
fetchPypi,
pythonOlder,
pytestCheckHook,
pythonRelaxDepsHook,
matplotlib,
nibabel,
numpy,
pydicom,
pymedio,
scikit-fuzzy,
scikit-image,
scikit-learn,
scipy,
simpleitk,
statsmodels,
}:
buildPythonPackage rec {
pname = "intensity-normalization";
version = "2.2.4";
format = "setuptools";
disabled = pythonOlder "3.6";
src = fetchPypi {
pname = "intensity_normalization";
inherit version;
hash = "sha256-s/trDIRoqLFj3NO+iv3E+AEB4grBAHDlEL6+TCdsgmg=";
};
postPatch = ''
substituteInPlace setup.cfg --replace "!=3.10.*," "" --replace "!=3.11.*" ""
substituteInPlace setup.cfg --replace "pytest-runner" ""
'';
nativeBuildInputs = [ pythonRelaxDepsHook ];
pythonRelaxDeps = [ "nibabel" ];
propagatedBuildInputs = [
matplotlib
nibabel
numpy
pydicom
pymedio
scikit-fuzzy
scikit-image
scikit-learn
scipy
simpleitk
statsmodels
];
nativeCheckInputs = [ pytestCheckHook ];
pytestFlagsArray = [ "tests" ];
pythonImportsCheck = [
"intensity_normalization"
"intensity_normalization.normalize"
"intensity_normalization.plot"
"intensity_normalization.util"
];
meta = with lib; {
homepage = "https://github.com/jcreinhold/intensity-normalization";
description = "MRI intensity normalization tools";
maintainers = with maintainers; [ bcdarwin ];
license = licenses.asl20;
};
}
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