1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
|
{
lib,
stdenv,
buildPythonPackage,
pythonOlder,
fetchFromGitHub,
fetchpatch,
pytest-xdist,
pytestCheckHook,
setuptools,
absl-py,
cvxpy,
jax,
jaxlib,
matplotlib,
numpy,
optax,
scipy,
scikit-learn,
}:
buildPythonPackage rec {
pname = "jaxopt";
version = "0.8.3";
pyproject = true;
disabled = pythonOlder "3.8";
src = fetchFromGitHub {
owner = "google";
repo = "jaxopt";
rev = "refs/tags/jaxopt-v${version}";
hash = "sha256-T/BHSnuk3IRuLkBj3Hvb/tFIb7Au25jjQtvwL28OU1U=";
};
patches = [
# fix failing tests from scipy 1.12 update
# https://github.com/google/jaxopt/pull/574
(fetchpatch {
name = "scipy-1.12-fix-tests.patch";
url = "https://github.com/google/jaxopt/commit/48b09dc4cc93b6bc7e6764ed5d333f9b57f3493b.patch";
hash = "sha256-v+617W7AhxA1Dzz+DBtljA4HHl89bRTuGi1QfatobNY=";
})
];
build-system = [ setuptools ];
dependencies = [
absl-py
jax
jaxlib
matplotlib
numpy
scipy
];
nativeCheckInputs = [
pytest-xdist
pytestCheckHook
cvxpy
optax
scikit-learn
];
pythonImportsCheck = [
"jaxopt"
"jaxopt.implicit_diff"
"jaxopt.linear_solve"
"jaxopt.loss"
"jaxopt.tree_util"
];
disabledTests =
[
# https://github.com/google/jaxopt/issues/592
"test_solve_sparse"
]
++ lib.optionals (stdenv.isLinux && stdenv.isAarch64) [
# https://github.com/google/jaxopt/issues/577
"test_binary_logit_log_likelihood"
"test_solve_sparse"
"test_logreg_with_intercept_manual_loop3"
# https://github.com/google/jaxopt/issues/593
# Makes the test suite crash
"test_dtype_consistency"
# AssertionError: Array(0.01411963, dtype=float32) not less than or equal to 0.01
"test_multiclass_logreg6"
]
++ lib.optionals stdenv.isDarwin [
# Fatal Python error: Aborted
"test_dtype_consistency"
# AssertionError (flaky numerical tests)
"test_logreg_with_intercept_manual_loop3"
"test_binary_logit_log_likelihood"
];
meta = {
homepage = "https://jaxopt.github.io";
description = "Hardware accelerated, batchable and differentiable optimizers in JAX";
changelog = "https://github.com/google/jaxopt/releases/tag/jaxopt-v${version}";
license = lib.licenses.asl20;
maintainers = with lib.maintainers; [ bcdarwin ];
};
}
|
