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{
lib,
buildPythonPackage,
fetchFromGitHub,
fetchpatch,
pythonOlder,
pythonAtLeast,
ninja,
ignite,
numpy,
pybind11,
torch,
which,
}:
buildPythonPackage rec {
pname = "monai";
version = "1.3.1";
pyproject = true;
disabled = pythonOlder "3.8";
src = fetchFromGitHub {
owner = "Project-MONAI";
repo = "MONAI";
rev = "refs/tags/${version}";
hash = "sha256-YjEJbDM9+PiC3Kse8NA/b/yJBsReaK6yIyEB9uktiEc=";
};
patches = [
(fetchpatch {
name = "remove-distutils";
url = "https://github.com/Project-MONAI/MONAI/commit/87862f0d5730d42d282e779fc1450f18b4869863.patch";
hash = "sha256-wApYfugDPWcuxwmd91peNqc0+l+SoMlT8hhx99oI2Co=";
})
];
preBuild = ''
export MAX_JOBS=$NIX_BUILD_CORES;
'';
nativeBuildInputs = [
ninja
which
];
buildInputs = [ pybind11 ];
propagatedBuildInputs = [
numpy
torch
ignite
];
BUILD_MONAI = 1;
doCheck = false; # takes too long; tries to download data
pythonImportsCheck = [
"monai"
"monai.apps"
"monai.data"
"monai.engines"
"monai.handlers"
"monai.inferers"
"monai.losses"
"monai.metrics"
"monai.optimizers"
"monai.networks"
"monai.transforms"
"monai.utils"
"monai.visualize"
];
meta = with lib; {
description = "Pytorch framework (based on Ignite) for deep learning in medical imaging";
homepage = "https://github.com/Project-MONAI/MONAI";
changelog = "https://github.com/Project-MONAI/MONAI/releases/tag/${version}";
license = licenses.asl20;
maintainers = [ maintainers.bcdarwin ];
};
}
|
