blob: 336042e595d456dc0775b15295480bdeb53dfac3 (
plain) (
blame)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
|
{
lib,
stdenv,
buildPythonPackage,
fetchFromGitHub,
cython,
gcc,
click,
pytestCheckHook,
pythonOlder,
setuptools,
}:
buildPythonPackage rec {
pname = "primer3";
version = "2.0.3";
pyproject = true;
disabled = pythonOlder "3.7";
src = fetchFromGitHub {
owner = "libnano";
repo = "primer3-py";
rev = "refs/tags/v${version}";
hash = "sha256-O8BFjkjG9SfknSrK34s9EJnqTrtCf4zW9A+N+/MHl2w=";
};
nativeBuildInputs = [
cython
setuptools
] ++ lib.optionals stdenv.isDarwin [ gcc ];
nativeCheckInputs = [
click
pytestCheckHook
];
# We are not sure why exactly this is need. It seems `pytestCheckHook`
# doesn't find extension modules installed in $out/${python.sitePackages},
# and the tests rely upon them. This was initially reported upstream at
# https://github.com/libnano/primer3-py/issues/120 and we investigate this
# downstream at: https://github.com/NixOS/nixpkgs/issues/255262.
preCheck = ''
python setup.py build_ext --inplace
'';
pythonImportsCheck = [ "primer3" ];
meta = with lib; {
description = "Oligo analysis and primer design";
homepage = "https://github.com/libnano/primer3-py";
changelog = "https://github.com/libnano/primer3-py/blob/v${version}/CHANGES";
license = with licenses; [ gpl2Only ];
maintainers = with maintainers; [ fab ];
};
}
|
