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{ lib
, buildPythonPackage
, fetchPypi
, importlib-metadata
, nose
, numpy
, setuptools
, setuptools-scm
, six
, glibcLocales
, pytestCheckHook
}:
buildPythonPackage rec {
pname = "pyfaidx";
version = "0.8.1.1";
format = "pyproject";
src = fetchPypi {
inherit pname version;
hash = "sha256-bwSCNSYZ8sxWADyiIyG9sNB2S2VnlbweQGKx+psIaGs=";
};
nativeBuildInputs = [
setuptools
setuptools-scm
];
propagatedBuildInputs = [
importlib-metadata
six
];
nativeCheckInputs = [
glibcLocales
nose
numpy
pytestCheckHook
];
disabledTestPaths = [
# FileNotFoundError: [Errno 2] No such file or directory: 'data/genes.fasta.gz'
"tests/test_Fasta_bgzip.py"
];
pythonImportsCheck = [
"pyfaidx"
];
meta = with lib; {
homepage = "https://github.com/mdshw5/pyfaidx";
description = "Python classes for indexing, retrieval, and in-place modification of FASTA files using a samtools compatible index";
mainProgram = "faidx";
license = licenses.bsd3;
maintainers = with maintainers; [ jbedo ];
};
}
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