about summary refs log tree commit diff
path: root/pkgs/development/python-modules/pymc/default.nix
blob: f8b3e637e0f1fa91dfba53d7127bd435b30436cb (plain) (blame)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
{ lib
, arviz
, buildPythonPackage
, cachetools
, cloudpickle
, fastprogress
, fetchFromGitHub
, numpy
, pytensor
, pythonOlder
, scipy
, typing-extensions
, setuptools
}:

buildPythonPackage rec {
  pname = "pymc";
  version = "5.10.4";
  pyproject = true;

  disabled = pythonOlder "3.9";

  src = fetchFromGitHub {
    owner = "pymc-devs";
    repo = "pymc";
    rev = "refs/tags/v${version}";
    hash = "sha256-tiOXbryY2TmeBVrG5cIMeDJ4alolBQ5LosdfH3tpVOA=";
  };

  build-system = [
    setuptools
  ];

  postPatch = ''
    substituteInPlace setup.py \
      --replace-fail ', "pytest-cov"' ""
  '';

  propagatedBuildInputs = [
    arviz
    cachetools
    cloudpickle
    fastprogress
    numpy
    pytensor
    scipy
    typing-extensions
  ];

  # The test suite is computationally intensive and test failures are not
  # indicative for package usability hence tests are disabled by default.
  doCheck = false;

  pythonImportsCheck = [
    "pymc"
  ];

  meta = with lib; {
    description = "Bayesian estimation, particularly using Markov chain Monte Carlo (MCMC)";
    homepage = "https://github.com/pymc-devs/pymc";
    changelog = "https://github.com/pymc-devs/pymc/releases/tag/v${version}";
    license = licenses.asl20;
    maintainers = with maintainers; [ nidabdella ferrine ];
  };
}