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{
lib,
buildPythonPackage,
fetchFromGitHub,
setuptools,
cython,
oldest-supported-numpy,
requests,
decorator,
natsort,
numpy,
pandas,
scipy,
h5py,
hdmedians,
biom-format,
python,
pytestCheckHook,
}:
buildPythonPackage rec {
pname = "scikit-bio";
version = "0.6.0";
pyproject = true;
src = fetchFromGitHub {
owner = "scikit-bio";
repo = "scikit-bio";
rev = "refs/tags/${version}";
hash = "sha256-v8/r52pJpMi34SekPQBf7CqRbs+ZEyPR3WO5RBB7uKg=";
};
build-system = [
setuptools
cython
oldest-supported-numpy
];
dependencies = [
requests
decorator
natsort
numpy
pandas
scipy
h5py
hdmedians
biom-format
];
nativeCheckInputs = [ pytestCheckHook ];
# only the $out dir contains the built cython extensions, so we run the tests inside there
pytestFlagsArray = [ "${placeholder "out"}/${python.sitePackages}/skbio" ];
pythonImportsCheck = [ "skbio" ];
meta = {
homepage = "http://scikit-bio.org/";
description = "Data structures, algorithms and educational resources for bioinformatics";
license = lib.licenses.bsd3;
maintainers = with lib.maintainers; [ tomasajt ];
};
}
|
