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{ lib
, stdenv
, fetchPypi
, python
, buildPythonPackage
, cython
, gfortran
, pythran
, nose
, pytest
, pytest-xdist
, numpy
, pybind11
}:
buildPythonPackage rec {
pname = "scipy";
version = "1.8.0";
src = fetchPypi {
inherit pname version;
sha256 = "sha256-MdTy1rckvJqY5Se1hJuKflib8epjDDOqVj7akSyf8L0=";
};
nativeBuildInputs = [ cython gfortran pythran ];
buildInputs = [ numpy.blas pybind11 ];
propagatedBuildInputs = [ numpy ];
checkInputs = [ nose pytest pytest-xdist ];
# Remove tests because of broken wrapper
prePatch = ''
rm scipy/linalg/tests/test_lapack.py
'';
doCheck = !(stdenv.isx86_64 && stdenv.isDarwin);
preConfigure = ''
sed -i '0,/from numpy.distutils.core/s//import setuptools;from numpy.distutils.core/' setup.py
export NPY_NUM_BUILD_JOBS=$NIX_BUILD_CORES
'';
preBuild = ''
ln -s ${numpy.cfg} site.cfg
'';
# disable stackprotector on aarch64-darwin for now
#
# build error:
#
# /private/tmp/nix-build-python3.9-scipy-1.6.3.drv-0/ccDEsw5U.s:109:15: error: index must be an integer in range [-256, 255].
#
# ldr x0, [x0, ___stack_chk_guard];momd
#
hardeningDisable = lib.optionals (stdenv.isAarch64 && stdenv.isDarwin) [ "stackprotector" ];
checkPhase = ''
runHook preCheck
pushd dist
${python.interpreter} -c "import scipy; scipy.test('fast', verbose=10, parallel=$NIX_BUILD_CORES)"
popd
runHook postCheck
'';
passthru = {
blas = numpy.blas;
};
setupPyBuildFlags = [ "--fcompiler='gnu95'" ];
SCIPY_USE_G77_ABI_WRAPPER = 1;
meta = with lib; {
description = "SciPy (pronounced 'Sigh Pie') is open-source software for mathematics, science, and engineering";
homepage = "https://www.scipy.org/";
license = licenses.bsd3;
maintainers = [ maintainers.fridh ];
};
}
|
