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{ lib
, stdenv
, asdf
, astropy
, astropy-extension-helpers
, astropy-helpers
, beautifulsoup4
, buildPythonPackage
, drms
, fetchPypi
, glymur
, h5netcdf
, hypothesis
, lxml
, matplotlib
, numpy
, pandas
, parfive
, pytest-astropy
, pytestCheckHook
, pytest-mock
, python-dateutil
, pythonOlder
, scikitimage
, scipy
, setuptools-scm
, sqlalchemy
, tqdm
, zeep
}:
buildPythonPackage rec {
pname = "sunpy";
version = "4.1.3";
format = "setuptools";
disabled = pythonOlder "3.8";
src = fetchPypi {
inherit pname version;
hash = "sha256-YNShjuLC7gBRn11oAd5Kp5CfCn92vAo/K4QNIXm/Mtc=";
};
nativeBuildInputs = [
astropy-extension-helpers
setuptools-scm
];
propagatedBuildInputs = [
astropy
astropy-helpers
numpy
parfive
];
passthru.optional-dependencies = {
asdf = [
asdf
# asdf-astropy
];
database = [
sqlalchemy
];
image = [
scikitimage
scipy
];
net = [
beautifulsoup4
drms
python-dateutil
tqdm
zeep
];
jpeg2000 = [
glymur
lxml
];
timeseries = [
# cdflib
h5netcdf
# h5py
matplotlib
pandas
];
};
nativeCheckInputs = [
hypothesis
pytest-astropy
pytest-mock
pytestCheckHook
] ++ passthru.optional-dependencies.asdf
++ passthru.optional-dependencies.database
++ passthru.optional-dependencies.image
++ passthru.optional-dependencies.net
++ passthru.optional-dependencies.timeseries;
postPatch = ''
substituteInPlace setup.cfg \
--replace " --dist no" ""
'';
# darwin has write permission issues
doCheck = stdenv.isLinux;
preCheck = ''
export HOME=$(mktemp -d)
'';
disabledTests = [
"rst"
"test_sunpy_warnings_logging"
"test_main_nonexisting_module"
"test_main_stdlib_module"
"test_find_dependencies"
];
disabledTestPaths = [
# Tests are very slow
"sunpy/net/tests/test_fido.py"
# asdf.extensions plugin issue
"sunpy/io/special/asdf/resources/schemas/"
"sunpy/io/special/asdf/resources/manifests/sunpy-1.0.0.yaml"
# Requires mpl-animators package
"sunpy/map/tests/test_compositemap.py"
"sunpy/map/tests/test_mapbase.py"
"sunpy/map/tests/test_mapsequence.py"
"sunpy/map/tests/test_plotting.py"
"sunpy/map/tests/test_reproject_to.py"
"sunpy/net/tests/test_helioviewer.py"
"sunpy/timeseries/tests/test_timeseriesbase.py"
"sunpy/visualization/animator/tests/test_basefuncanimator.py"
"sunpy/visualization/animator/tests/test_mapsequenceanimator.py"
"sunpy/visualization/animator/tests/test_wcs.py"
"sunpy/visualization/colormaps/tests/test_cm.py"
# Requires cdflib package
"sunpy/timeseries/tests/test_timeseries_factory.py"
# Requires jplephem
"sunpy/image/tests/test_transform.py"
"sunpy/io/special/asdf/tests/test_coordinate_frames.py"
"sunpy/io/special/asdf/tests/test_genericmap.py"
# distutils is deprecated
"sunpy/io/setup_package.py"
];
pytestFlagsArray = [
"-W"
"ignore::DeprecationWarning"
];
# Wants a configuration file
# pythonImportsCheck = [
# "sunpy"
# ];
meta = with lib; {
description = "Python for Solar Physics";
homepage = "https://sunpy.org";
license = licenses.bsd2;
maintainers = with maintainers; [ costrouc ];
};
}
|
