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{ lib
, fetchPypi
, fetchurl
, fetchpatch
, buildPythonPackage
, pythonOlder
, python
, bzip2
, c-blosc
, cython
, hdf5
, lzo
, numpy
, numexpr
, setuptools
# Test inputs
, pytestCheckHook
}:
buildPythonPackage rec {
pname = "tables";
version = "3.6.1";
disabled = pythonOlder "3.5";
src = fetchPypi {
inherit pname version;
sha256 = "0j8vnxh2m5n0cyk9z3ndcj5n1zj5rdxgc1gb78bqlyn2lyw75aa9";
};
nativeBuildInputs = [ cython ];
buildInputs = [
bzip2
c-blosc
hdf5
lzo
];
propagatedBuildInputs = [
numpy
numexpr
setuptools # uses pkg_resources at runtime
];
patches = [
(fetchpatch {
# Needed for numpy >= 1.20.0
name = "tables-pr-862-use-lowercase-numpy-dtypes.patch";
url = "https://github.com/PyTables/PyTables/commit/93a3272b8fe754095637628b4d312400e24ae654.patch";
sha256 = "00czgxnm1dxp9763va9xw1nc7dd7kxh9hjcg9klim52519hkbhi4";
})
];
# When doing `make distclean`, ignore docs
postPatch = ''
substituteInPlace Makefile --replace "src doc" "src"
# Force test suite to error when unittest runner fails
substituteInPlace tables/tests/test_suite.py \
--replace "return 0" "assert result.wasSuccessful(); return 0" \
--replace "return 1" "assert result.wasSuccessful(); return 1"
'';
# Regenerate C code with Cython
preBuild = ''
make distclean
'';
setupPyBuildFlags = [
"--hdf5=${lib.getDev hdf5}"
"--lzo=${lib.getDev lzo}"
"--bzip2=${lib.getDev bzip2}"
"--blosc=${lib.getDev c-blosc}"
];
checkInputs = [ pytestCheckHook ];
preCheck = ''
cd ..
'';
# Runs the test suite as one single test via unittest. The whole "heavy" test suite supposedly takes ~5 hours to run.
pytestFlagsArray = [
"--pyargs"
"tables.tests.test_suite"
];
pythonImportsCheck = [ "tables" ];
meta = with lib; {
description = "Hierarchical datasets for Python";
homepage = "https://www.pytables.org/";
license = licenses.bsd2;
maintainers = with maintainers; [ drewrisinger ];
};
}
|
