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author | Bruno Bzeznik <Bruno.Bzeznik@univ-grenoble-alpes.fr> | 2020-04-24 11:20:14 +0200 |
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committer | Bruno Bzeznik <Bruno.Bzeznik@univ-grenoble-alpes.fr> | 2020-04-24 11:20:14 +0200 |
commit | db48393552418e5a4aa67d6c1a626982150b6dfe (patch) | |
tree | 653570cff17b6524ea5d281eee2fb7d0463d404c | |
parent | 79743fef7ba31f66f156f43aa332c39bae7c5229 (diff) |
init at 3.0.0-beta14
-rw-r--r-- | pkgs/applications/science/biology/obitools/obitools3.nix | 38 | ||||
-rw-r--r-- | pkgs/top-level/all-packages.nix | 2 |
2 files changed, 40 insertions, 0 deletions
diff --git a/pkgs/applications/science/biology/obitools/obitools3.nix b/pkgs/applications/science/biology/obitools/obitools3.nix new file mode 100644 index 0000000000000..076e459c8f0bd --- /dev/null +++ b/pkgs/applications/science/biology/obitools/obitools3.nix @@ -0,0 +1,38 @@ +{ stdenv, fetchurl, python3Packages, cmake, python3 }: + +let + pythonPackages = python3Packages; +in + +pythonPackages.buildPythonApplication rec { + pname = "obitools3"; + version = "3.0.0-beta14"; + + src = fetchurl { + url = "https://git.metabarcoding.org/obitools/${pname}/repository/v${version}/archive.tar.gz"; + sha256 = "17krklxfvxl6baf2m394gm1a88y0lg0bwqx20cf5q39zyw04z442"; + }; + + preBuild = '' + substituteInPlace src/CMakeLists.txt --replace \$'{PYTHONLIB}' "$out/lib/${python3.libPrefix}/site-packages"; + export NIX_CFLAGS_COMPILE="-L $out/lib/${python3.libPrefix}/site-packages $NIX_CFLAGS_COMPILE" + ''; + + disabled = !pythonPackages.isPy3k; + + nativeBuildInputs = [ pythonPackages.cython cmake ]; + + dontConfigure = true; + + doCheck = true; + + enableParallelBuilding = true; + + meta = with stdenv.lib ; { + description = "Management of analyses and data in DNA metabarcoding"; + homepage = "https://git.metabarcoding.org/obitools/obitools3"; + license = licenses.cecill20; + maintainers = [ maintainers.bzizou ]; + platforms = platforms.all; + }; +} diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index 209bf1848453c..4f2177d41e079 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -24435,6 +24435,8 @@ in manta = callPackage ../applications/science/biology/manta { }; + obitools3 = callPackage ../applications/science/biology/obitools/obitools3.nix { }; + octopus-caller = callPackage ../applications/science/biology/octopus { }; paml = callPackage ../applications/science/biology/paml { }; |