diff options
| author | natsukium <tomoya.otabi@gmail.com> | 2023-11-03 18:00:30 +0900 |
|---|---|---|
| committer | natsukium <tomoya.otabi@gmail.com> | 2023-11-03 19:34:28 +0900 |
| commit | 10c3a4062187989d425cd4b0e8ef7e59377e1b6d (patch) | |
| tree | e997accc64131cb08eae434e707a9138252af070 /pkgs/applications/science/biology/kssd | |
| parent | 847c506eaece0913d4ca995e34bd4c84bac1cb19 (diff) | |
kssd: enable aarch64-linux support & tests
Diffstat (limited to 'pkgs/applications/science/biology/kssd')
| -rw-r--r-- | pkgs/applications/science/biology/kssd/default.nix | 13 |
1 files changed, 12 insertions, 1 deletions
diff --git a/pkgs/applications/science/biology/kssd/default.nix b/pkgs/applications/science/biology/kssd/default.nix index 200b70458ed33..8f60b8b991ede 100644 --- a/pkgs/applications/science/biology/kssd/default.nix +++ b/pkgs/applications/science/biology/kssd/default.nix @@ -3,6 +3,8 @@ , fetchFromGitHub , fetchpatch , zlib +, kssd +, runCommand }: stdenv.mkDerivation (finalAttrs: { @@ -35,12 +37,21 @@ stdenv.mkDerivation (finalAttrs: { runHook postInstall ''; + passthru.tests = { + simple = runCommand "${finalAttrs.pname}-test" { } '' + mkdir $out + ${lib.getExe kssd} dist -L ${kssd.src}/shuf_file/L3K10.shuf -r ${kssd.src}/test_fna/seqs1 -o $out/reference + ${lib.getExe kssd} dist -L ${kssd.src}/shuf_file/L3K10.shuf -o $out/query ${kssd.src}/test_fna/seqs2 + ${lib.getExe kssd} dist -r $out/reference -o $out/distout $out/query + ''; + }; + meta = with lib; { description = "K-mer substring space decomposition"; license = licenses.asl20; homepage = "https://github.com/yhg926/public_kssd"; maintainers = with maintainers; [ unode ]; - platforms = [ "x86_64-linux" ]; + platforms = platforms.linux; mainProgram = "kssd"; }; }) |