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| author | Robert Schütz <nix@dotlambda.de> | 2022-01-12 05:54:32 +0000 |
|---|---|---|
| committer | Robert Schütz <nix@dotlambda.de> | 2022-01-16 18:00:59 +0000 |
| commit | 65e959eb9a1e88d65c03c732fdb514182327c39d (patch) | |
| tree | fabf3082f3bf2ef6ab6bbea921eb7dc4d1990bba /pkgs/applications/science/biology/tebreak | |
| parent | 0d6e7fed1ea34cbdfe6bba6aad56014d673acf6a (diff) | |
tebreak: also use python3 for tests
Diffstat (limited to 'pkgs/applications/science/biology/tebreak')
| -rw-r--r-- | pkgs/applications/science/biology/tebreak/default.nix | 12 |
1 files changed, 6 insertions, 6 deletions
diff --git a/pkgs/applications/science/biology/tebreak/default.nix b/pkgs/applications/science/biology/tebreak/default.nix index cb606a6b34635..e56d91dc2cd12 100644 --- a/pkgs/applications/science/biology/tebreak/default.nix +++ b/pkgs/applications/science/biology/tebreak/default.nix @@ -1,7 +1,7 @@ -{ lib, fetchFromGitHub, last, exonerate, minia, python3Packages, bwa -, samtools, findutils, python }: +{ lib, fetchFromGitHub, last, exonerate, minia, python3, bwa +, samtools, findutils }: -python3Packages.buildPythonApplication rec { +python3.pkgs.buildPythonApplication rec { pname = "tebreak"; version = "1.1"; @@ -12,8 +12,8 @@ python3Packages.buildPythonApplication rec { sha256 = "13mgh775d8hkl340923lfwwm4r5ps70girn8d6wgfxzwzxylz8iz"; }; - nativeBuildInputs = [ findutils python3Packages.cython ]; - propagatedBuildInputs = with python3Packages; [ + nativeBuildInputs = [ findutils python3.pkgs.cython ]; + propagatedBuildInputs = with python3.pkgs; [ pysam scipy bx-python @@ -35,7 +35,7 @@ python3Packages.buildPythonApplication rec { checkPhase = '' $out/bin/tebreak -b test/data/example.ins.bam -r test/data/Homo_sapiens_chr4_50000000-60000000_assembly19.fasta -p 4 --pickle test/example.pickle --detail_out test/example.tebreak.detail.out -i lib/teref.human.fa pushd test - ${python.interpreter} checktest.py + ${python3.interpreter} checktest.py ''; meta = with lib; { |