diff options
author | Sergei Trofimovich <slyich@gmail.com> | 2024-02-25 07:49:10 +0000 |
---|---|---|
committer | Sergei Trofimovich <slyich@gmail.com> | 2024-02-25 07:49:10 +0000 |
commit | 0c544b0f0fa8c58fbc3bec059a9b8606f974d52a (patch) | |
tree | 87056261f4517c69cab3d1b725061e31c0692e6b /pkgs/applications/science/biology | |
parent | d6cc5bb41d95eafce820fe82035838312efeb0df (diff) |
sortmerna: fix `gcc-13` build
Without the change the build on `master` fails as https://hydra.nixos.org/build/249070958: In file included from /build/source/src/sortmerna/kseq_load.cpp:38: /build/source/include/kseq_load.hpp:61:12: error: 'uint64_t' has not been declared 61 | uint64_t number_total_read, | ^~~~~~~~
Diffstat (limited to 'pkgs/applications/science/biology')
-rw-r--r-- | pkgs/applications/science/biology/sortmerna/default.nix | 4 |
1 files changed, 4 insertions, 0 deletions
diff --git a/pkgs/applications/science/biology/sortmerna/default.nix b/pkgs/applications/science/biology/sortmerna/default.nix index a529867aaa743..bfd6d20f1384a 100644 --- a/pkgs/applications/science/biology/sortmerna/default.nix +++ b/pkgs/applications/science/biology/sortmerna/default.nix @@ -32,6 +32,10 @@ stdenv.mkDerivation rec { substituteInPlace src/sortmerna/CMakeLists.txt \ --replace "target_link_libraries(sortmerna" \ "target_link_libraries(sortmerna Threads::Threads" + + # Fix gcc-13 build by adding missing <cstdint> includes: + # https://github.com/sortmerna/sortmerna/issues/412 + sed -e '1i #include <cstdint>' -i include/kseq_load.hpp ''; meta = with lib; { |