Merge pull request #287721 from trofi/megahit-gcc-13-fix

megahit: fix `gcc-13` build failure

1 files changed, 11 insertions, 1 deletions

diff --git a/pkgs/applications/science/biology/megahit/default.nix b/pkgs/applications/science/biology/megahit/default.nix
index 7f054a51d5e05..5fa9420bc87cb 100644
--- a/pkgs/applications/science/biology/megahit/default.nix
+++ b/pkgs/applications/science/biology/megahit/default.nix
@@ -1,4 +1,4 @@
-{ lib, stdenv, fetchFromGitHub, cmake, zlib }:
+{ lib, stdenv, fetchFromGitHub, fetchpatch, cmake, zlib }:
 
 stdenv.mkDerivation rec {
   pname    = "megahit";
@@ -11,6 +11,16 @@ stdenv.mkDerivation rec {
     sha256 = "1r5d9nkdmgjsbrpj43q9hy3s8jwsabaz3ji561v18hy47v58923c";
   };
 
+  patches = [
+    # Fix gcc-13 build failure:
+    #   https://github.com/voutcn/megahit/pull/366
+    (fetchpatch {
+      name = "gcc-13.patch";
+      url = "https://github.com/voutcn/megahit/commit/4cb2f793503087163bda8592222f105f27e33e66.patch";
+      hash = "sha256-b5mhzif+OPcMjmg+BnaUc5CB6Acn/KTBOJEw+WYEhbs=";
+    })
+  ];
+
   nativeBuildInputs = [ cmake ];
   buildInputs = [ zlib ];