diff options
| author | Sergei Trofimovich <slyich@gmail.com> | 2024-02-11 09:55:14 +0000 |
|---|---|---|
| committer | Sergei Trofimovich <slyich@gmail.com> | 2024-02-11 09:59:19 +0000 |
| commit | a59d5e302874e2c3dc4e08693ae43635fd2f0157 (patch) | |
| tree | 857e6faa55bab84bc22b3a23432ed98674d9e512 /pkgs/applications/science/biology | |
| parent | ef6206934d5726ed9315ac78879f5ba2a6b55785 (diff) | |
svaba: fix `gcc-13` build failure
Without the change build fails on `master` as
https://hydra.nixos.org/build/249164637:
In file included from Histogram.cpp:1:
Histogram.h:104:61: error: 'uint32_t' does not name a type
104 | Histogram(const int32_t& start, const int32_t& end, const uint32_t& width);
| ^~~~~~~~
Diffstat (limited to 'pkgs/applications/science/biology')
| -rw-r--r-- | pkgs/applications/science/biology/svaba/default.nix | 7 |
1 files changed, 7 insertions, 0 deletions
diff --git a/pkgs/applications/science/biology/svaba/default.nix b/pkgs/applications/science/biology/svaba/default.nix index 441c7ed6dcc3d..d36c4b668ec3b 100644 --- a/pkgs/applications/science/biology/svaba/default.nix +++ b/pkgs/applications/science/biology/svaba/default.nix @@ -14,6 +14,13 @@ stdenv.mkDerivation rec { buildInputs = [ zlib bzip2 xz ]; + postPatch = '' + # Fix gcc-13 build failure due to missing includes + sed -e '1i #include <cstdint>' -i \ + SeqLib/src/non_api/Histogram.h \ + src/svaba/Histogram.h + ''; + # Workaround build failure on -fno-common toolchains like upstream # gcc-10. Otherwise build fails as: # ld: ./libfml.a(rle.o):/build/source/SeqLib/fermi-lite/rle.h:33: multiple definition of |