about summary refs log tree commit diff
path: root/pkgs/applications/science
diff options
context:
space:
mode:
authorgithub-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>2024-06-26 00:13:39 +0000
committerGitHub <noreply@github.com>2024-06-26 00:13:39 +0000
commitc6f5167f9043a154b82b5564ea6c14786382976c (patch)
tree487680b24f635c7dbd3aa80c1bd07b49d35e2ec6 /pkgs/applications/science
parentb7a9a1b139e8096ac15d07c7bdc944ccae47edce (diff)
parent260616a5fddf0d3cf41bca8b74be23e2e2bf8c2e (diff)
Merge master into haskell-updates haskell-updates
Diffstat (limited to 'pkgs/applications/science')
-rw-r--r--pkgs/applications/science/astronomy/siril/default.nix4
-rw-r--r--pkgs/applications/science/biology/kent/default.nix4
-rw-r--r--pkgs/applications/science/biology/last/default.nix4
-rw-r--r--pkgs/applications/science/molecular-dynamics/gromacs/default.nix6
4 files changed, 9 insertions, 9 deletions
diff --git a/pkgs/applications/science/astronomy/siril/default.nix b/pkgs/applications/science/astronomy/siril/default.nix
index 569d537172542..2f572350bae02 100644
--- a/pkgs/applications/science/astronomy/siril/default.nix
+++ b/pkgs/applications/science/astronomy/siril/default.nix
@@ -7,13 +7,13 @@
 
 stdenv.mkDerivation rec {
   pname = "siril";
-  version = "1.2.1";
+  version = "1.2.3";
 
   src = fetchFromGitLab {
     owner = "free-astro";
     repo = "siril";
     rev = version;
-    hash = "sha256-njvByA8nbG3qHKfv8eX20TrIhngVI0nzIHmhYIN6htE=";
+    hash = "sha256-JUMk2XHMOeocSpeeI+k3s9TsEQCdqz3oigTzuwRHbT4=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/applications/science/biology/kent/default.nix b/pkgs/applications/science/biology/kent/default.nix
index 56cfa5168a486..f30a6725bb474 100644
--- a/pkgs/applications/science/biology/kent/default.nix
+++ b/pkgs/applications/science/biology/kent/default.nix
@@ -13,13 +13,13 @@
 }:
 stdenv.mkDerivation rec {
   pname = "kent";
-  version = "466";
+  version = "467";
 
   src = fetchFromGitHub {
     owner = "ucscGenomeBrowser";
     repo = pname;
     rev = "v${version}_base";
-    hash = "sha256-zoDZ+8G0SHKfWmkXBqp+WSjQXtmkcTIZjrjPhUIJw1c=";
+    hash = "sha256-Y8iHSo70nsPZwVy8ZiiqjU3mGrPOyPQkW0VpLS+ulGE=";
   };
 
   buildInputs = [ libpng libuuid zlib bzip2 xz openssl curl libmysqlclient ];
diff --git a/pkgs/applications/science/biology/last/default.nix b/pkgs/applications/science/biology/last/default.nix
index 700b2cf3b4548..7cfdb674c6e49 100644
--- a/pkgs/applications/science/biology/last/default.nix
+++ b/pkgs/applications/science/biology/last/default.nix
@@ -9,13 +9,13 @@
 
 stdenv.mkDerivation rec {
   pname = "last";
-  version = "1544";
+  version = "1548";
 
   src = fetchFromGitLab {
     owner = "mcfrith";
     repo = "last";
     rev = "refs/tags/${version}";
-    hash = "sha256-jxNudfUvSqV1QUzdvG8LWtL977oho9QuOQImmwbQiIM=";
+    hash = "sha256-6mLPnyEAuRvCeV8pv3avsm6CKDrBPgX8xSxGO2kvTrM=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/applications/science/molecular-dynamics/gromacs/default.nix b/pkgs/applications/science/molecular-dynamics/gromacs/default.nix
index bf2fd1dbf3504..6531002ceb31b 100644
--- a/pkgs/applications/science/molecular-dynamics/gromacs/default.nix
+++ b/pkgs/applications/science/molecular-dynamics/gromacs/default.nix
@@ -24,7 +24,7 @@
 assert enableCuda -> singlePrec;
 
 let
-  inherit (cudaPackages.cudaFlags) cudaCapabilities dropDot;
+  inherit (cudaPackages.flags) cmakeCudaArchitecturesString;
 
   # Select reasonable defaults for all major platforms
   # The possible values are defined in CMakeLists.txt:
@@ -111,10 +111,10 @@ in stdenv.mkDerivation rec {
      ]
   ) ++ lib.optionals enableCuda [
     "-DGMX_GPU=CUDA"
-    (lib.cmakeFeature "CMAKE_CUDA_ARCHITECTURES" (builtins.concatStringsSep ";" (map dropDot cudaCapabilities)))
+    (lib.cmakeFeature "CMAKE_CUDA_ARCHITECTURES" cmakeCudaArchitecturesString)
 
     # Gromacs seems to ignore and override the normal variables, so we add this ad hoc:
-    (lib.cmakeFeature "GMX_CUDA_TARGET_COMPUTE" (builtins.concatStringsSep ";" (map dropDot cudaCapabilities)))
+    (lib.cmakeFeature "GMX_CUDA_TARGET_COMPUTE" cmakeCudaArchitecturesString)
   ];
 
   postInstall = ''