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| author | Luis Pedro Coelho <luis@luispedro.org> | 2022-05-04 02:16:17 +0200 |
|---|---|---|
| committer | Luis Pedro Coelho <luis@luispedro.org> | 2022-05-04 02:16:17 +0200 |
| commit | 47588733783c4133de4973caa466d52d9c04992a (patch) | |
| tree | 7d7985872f9ffdaf51f9b07821d5aba895034a8d /pkgs/applications/science | |
| parent | 967a5d78962b88f4e91fe5e3e4497912556ea60b (diff) | |
Static build for samtools
Curses is not supported (it may be possible to support it)
Diffstat (limited to 'pkgs/applications/science')
| -rw-r--r-- | pkgs/applications/science/biology/samtools/default.nix | 9 |
1 files changed, 8 insertions, 1 deletions
diff --git a/pkgs/applications/science/biology/samtools/default.nix b/pkgs/applications/science/biology/samtools/default.nix index 98b0394c35f1f..ec61e0bd7ce43 100644 --- a/pkgs/applications/science/biology/samtools/default.nix +++ b/pkgs/applications/science/biology/samtools/default.nix @@ -22,8 +22,15 @@ stdenv.mkDerivation rec { buildInputs = [ zlib ncurses htslib ]; + preConfigure = lib.optional stdenv.hostPlatform.isStatic '' + export LIBS="-lz -lbz2 -llzma" + ''; + makeFlags = lib.optional stdenv.hostPlatform.isStatic "AR=${stdenv.cc.targetPrefix}ar"; + configureFlags = [ "--with-htslib=${htslib}" ] - ++ lib.optional (ncurses == null) "--without-curses"; + ++ lib.optional (ncurses == null) "--without-curses" + ++ lib.optional stdenv.hostPlatform.isStatic ["--without-curses" ] + ; preCheck = '' patchShebangs test/ |