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authorVladimír Čunát <v@cunat.cz>2022-04-30 23:02:28 +0200
committerVladimír Čunát <v@cunat.cz>2022-04-30 23:02:28 +0200
commitc480cc28958dd852aa1acb29dee80d5324b3571e (patch)
treee96e973d9009044d6e088db4ba7113382a4312ce /pkgs/applications/science
parent6431e183cd9b67801ed4b6760649e639d2cb2f84 (diff)
parent16cdb34f95601222a19f1f9f8d041dc192d83619 (diff)
Merge branch 'master' into staging-next-2022-04-23
Diffstat (limited to 'pkgs/applications/science')
-rw-r--r--pkgs/applications/science/biology/blast/default.nix4
-rw-r--r--pkgs/applications/science/computer-architecture/qtrvsim/default.nix4
-rw-r--r--pkgs/applications/science/math/adolc/default.nix23
3 files changed, 27 insertions, 4 deletions
diff --git a/pkgs/applications/science/biology/blast/default.nix b/pkgs/applications/science/biology/blast/default.nix
index 15e1b3eb9891b..eb94a06944e50 100644
--- a/pkgs/applications/science/biology/blast/default.nix
+++ b/pkgs/applications/science/biology/blast/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   pname = "blast";
-  version = "2.12.0";
+  version = "2.13.0";
 
   src = fetchurl {
     url = "https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${version}/ncbi-blast-${version}+-src.tar.gz";
-    sha256 = "122bf45cyj3s3zv2lw1y1rhz7g22v0va560ai30xdjl8sk4wk8zx";
+    sha256 = "sha256-iVU3FNEz2vKMR3+D0zN5Szxi5BSECMByobRiDl7E/rI=";
   };
 
   sourceRoot = "ncbi-blast-${version}+-src/c++";
diff --git a/pkgs/applications/science/computer-architecture/qtrvsim/default.nix b/pkgs/applications/science/computer-architecture/qtrvsim/default.nix
index fc840fe45fbc8..c4bb788798d6a 100644
--- a/pkgs/applications/science/computer-architecture/qtrvsim/default.nix
+++ b/pkgs/applications/science/computer-architecture/qtrvsim/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   pname = "QtRVSim";
-  version = "0.9.2";
+  version = "0.9.3";
 
   src = fetchFromGitHub {
     owner = "cvut";
     repo = "qtrvsim";
     rev = "refs/tags/v${version}";
-    sha256 = "B1l+ysrodeDbxYfdLLMF8yk4/uPXTcDrTaMtYm89HuU=";
+    sha256 = "BV/nHRvimPaBtY1nfK1PZ2yJ9xWZpNlwiTRfI/9KQec=";
   };
 
   nativeBuildInputs = [ cmake wrapQtAppsHook ];
diff --git a/pkgs/applications/science/math/adolc/default.nix b/pkgs/applications/science/math/adolc/default.nix
new file mode 100644
index 0000000000000..636c3ea177a03
--- /dev/null
+++ b/pkgs/applications/science/math/adolc/default.nix
@@ -0,0 +1,23 @@
+{ lib, stdenv, fetchFromGitHub }:
+
+stdenv.mkDerivation rec {
+  pname = "adolc";
+  version = "2.7.2";
+
+  src = fetchFromGitHub {
+    owner = "coin-or";
+    repo = "ADOL-C";
+    sha256 = "1w0x0p32r1amfmh2lyx33j4cb5bpkwjr5z0ll43zi5wf5gsvckd1";
+    rev = "releases/${version}";
+  };
+
+  configureFlags = [ "--with-openmp-flag=-fopenmp" ];
+
+  meta = with lib; {
+    description = "Automatic Differentiation of C/C++";
+    homepage = "https://github.com/coin-or/ADOL-C";
+    maintainers = [ maintainers.bzizou ];
+    license = licenses.gpl2Plus;
+  };
+}
+