diff options
author | Vladimír Čunát <v@cunat.cz> | 2024-05-03 17:36:08 +0200 |
---|---|---|
committer | Vladimír Čunát <v@cunat.cz> | 2024-05-03 17:36:08 +0200 |
commit | e96601ecf084d9d6a366a4f0da7f36479f67f81e (patch) | |
tree | dbfe3d477ed9bee7adb03c76ae5fecce043fb9bf /pkgs/applications/science | |
parent | 1aae0909b02ffb4d0d4a45db322df7a8c9fdd34e (diff) | |
parent | 2544167a82ff99e00a8de68fa529701a30648128 (diff) |
Merge #306080: staging-next 2024-04-22
Diffstat (limited to 'pkgs/applications/science')
24 files changed, 47 insertions, 47 deletions
diff --git a/pkgs/applications/science/astronomy/gpredict/default.nix b/pkgs/applications/science/astronomy/gpredict/default.nix index 56c5a92460dd5..467f478da96b3 100644 --- a/pkgs/applications/science/astronomy/gpredict/default.nix +++ b/pkgs/applications/science/astronomy/gpredict/default.nix @@ -1,6 +1,6 @@ { lib, stdenv, fetchurl, fetchpatch, pkg-config, intltool , gtk3, glib, curl, goocanvas2, gpsd -, hamlib, wrapGAppsHook +, hamlib, wrapGAppsHook3 }: let @@ -24,7 +24,7 @@ in stdenv.mkDerivation { }) ]; - nativeBuildInputs = [ pkg-config intltool wrapGAppsHook ]; + nativeBuildInputs = [ pkg-config intltool wrapGAppsHook3 ]; buildInputs = [ curl glib gtk3 goocanvas2 gpsd hamlib ]; meta = with lib; { diff --git a/pkgs/applications/science/astronomy/phd2/default.nix b/pkgs/applications/science/astronomy/phd2/default.nix index 9c66df83dd4b3..b463a2845bdcc 100644 --- a/pkgs/applications/science/astronomy/phd2/default.nix +++ b/pkgs/applications/science/astronomy/phd2/default.nix @@ -1,5 +1,5 @@ { lib, stdenv, fetchFromGitHub, pkg-config, cmake, gtk3, wxGTK32 -, curl, gettext, glib, indi-full, libnova, wrapGAppsHook }: +, curl, gettext, glib, indi-full, libnova, wrapGAppsHook3 }: stdenv.mkDerivation rec { pname = "phd2"; @@ -15,7 +15,7 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ cmake pkg-config - wrapGAppsHook + wrapGAppsHook3 ]; buildInputs = [ diff --git a/pkgs/applications/science/astronomy/siril/default.nix b/pkgs/applications/science/astronomy/siril/default.nix index 255927d893d28..f039d056ec677 100644 --- a/pkgs/applications/science/astronomy/siril/default.nix +++ b/pkgs/applications/science/astronomy/siril/default.nix @@ -1,7 +1,7 @@ { lib, stdenv, fetchFromGitLab, fetchpatch, pkg-config, meson, ninja, cmake , git, criterion, gtk3, libconfig, gnuplot, opencv, json-glib , fftwFloat, cfitsio, gsl, exiv2, librtprocess, wcslib, ffmpeg -, libraw, libtiff, libpng, libjpeg, libheif, ffms, wrapGAppsHook +, libraw, libtiff, libpng, libjpeg, libheif, ffms, wrapGAppsHook3 }: stdenv.mkDerivation rec { @@ -24,7 +24,7 @@ stdenv.mkDerivation rec { ]; nativeBuildInputs = [ - meson ninja cmake pkg-config git criterion wrapGAppsHook + meson ninja cmake pkg-config git criterion wrapGAppsHook3 ]; buildInputs = [ diff --git a/pkgs/applications/science/astronomy/stellarium/default.nix b/pkgs/applications/science/astronomy/stellarium/default.nix index 35d6bd8aba925..687c0b3a2dda2 100644 --- a/pkgs/applications/science/astronomy/stellarium/default.nix +++ b/pkgs/applications/science/astronomy/stellarium/default.nix @@ -4,7 +4,7 @@ , fetchpatch , cmake , perl -, wrapGAppsHook +, wrapGAppsHook3 , wrapQtAppsHook , qtbase , qtcharts @@ -52,7 +52,7 @@ stdenv.mkDerivation (finalAttrs: { nativeBuildInputs = [ cmake perl - wrapGAppsHook + wrapGAppsHook3 wrapQtAppsHook qttools ]; diff --git a/pkgs/applications/science/biology/igv/default.nix b/pkgs/applications/science/biology/igv/default.nix index ba0114c7b5633..219792326b685 100644 --- a/pkgs/applications/science/biology/igv/default.nix +++ b/pkgs/applications/science/biology/igv/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchzip, jdk17, testers, wrapGAppsHook, igv }: +{ lib, stdenv, fetchzip, jdk17, testers, wrapGAppsHook3, igv }: stdenv.mkDerivation rec { pname = "igv"; @@ -24,7 +24,7 @@ stdenv.mkDerivation rec { chmod +x $out/bin/igv chmod +x $out/bin/igvtools ''; - nativeBuildInputs = [ wrapGAppsHook ]; + nativeBuildInputs = [ wrapGAppsHook3 ]; passthru.tests.version = testers.testVersion { package = igv; diff --git a/pkgs/applications/science/biology/jbrowse/default.nix b/pkgs/applications/science/biology/jbrowse/default.nix index c4c8966aa50d5..46a8c85d3a066 100644 --- a/pkgs/applications/science/biology/jbrowse/default.nix +++ b/pkgs/applications/science/biology/jbrowse/default.nix @@ -1,4 +1,4 @@ -{ lib, fetchurl, appimageTools, wrapGAppsHook }: +{ lib, fetchurl, appimageTools, wrapGAppsHook3 }: let pname = "jbrowse"; diff --git a/pkgs/applications/science/chemistry/chemtool/default.nix b/pkgs/applications/science/chemistry/chemtool/default.nix index fe2d658b5a44f..82b1834671619 100644 --- a/pkgs/applications/science/chemistry/chemtool/default.nix +++ b/pkgs/applications/science/chemistry/chemtool/default.nix @@ -5,7 +5,7 @@ , libX11 , gtk2 , fig2dev -, wrapGAppsHook +, wrapGAppsHook3 }: stdenv.mkDerivation rec { @@ -17,7 +17,7 @@ stdenv.mkDerivation rec { sha256 = "hhYaBGE4azNKX/sXzfCUpJGUGIRngnL0V0mBNRTdr8s="; }; - nativeBuildInputs = [ pkg-config wrapGAppsHook ]; + nativeBuildInputs = [ pkg-config wrapGAppsHook3 ]; buildInputs = [ libX11 gtk2 diff --git a/pkgs/applications/science/electronics/gtkwave/default.nix b/pkgs/applications/science/electronics/gtkwave/default.nix index 584f59ba8b472..3e0f3613ba903 100644 --- a/pkgs/applications/science/electronics/gtkwave/default.nix +++ b/pkgs/applications/science/electronics/gtkwave/default.nix @@ -10,7 +10,7 @@ , stdenv , tcl , tk -, wrapGAppsHook +, wrapGAppsHook3 , xz }: @@ -23,7 +23,7 @@ stdenv.mkDerivation rec { sha256 = "sha256-6rPgnnZBEVwHhIv7MPfdDDu+K4y+RQF+leB327pqwDg="; }; - nativeBuildInputs = [ pkg-config wrapGAppsHook ]; + nativeBuildInputs = [ pkg-config wrapGAppsHook3 ]; buildInputs = [ bzip2 glib gperf gtk3 judy tcl tk xz ] ++ lib.optional stdenv.isDarwin gtk-mac-integration; diff --git a/pkgs/applications/science/electronics/horizon-eda/default.nix b/pkgs/applications/science/electronics/horizon-eda/default.nix index 1fbc92f06115f..40a91937f07f5 100644 --- a/pkgs/applications/science/electronics/horizon-eda/default.nix +++ b/pkgs/applications/science/electronics/horizon-eda/default.nix @@ -4,7 +4,7 @@ , coreutils , libspnav , python3 -, wrapGAppsHook +, wrapGAppsHook3 }: let @@ -24,7 +24,7 @@ stdenv.mkDerivation rec { nativeBuildInputs = base.nativeBuildInputs ++ [ boost.dev - wrapGAppsHook + wrapGAppsHook3 python3 ]; diff --git a/pkgs/applications/science/electronics/kicad/default.nix b/pkgs/applications/science/electronics/kicad/default.nix index 99670eee8a46b..1cec011fae33f 100644 --- a/pkgs/applications/science/electronics/kicad/default.nix +++ b/pkgs/applications/science/electronics/kicad/default.nix @@ -193,14 +193,14 @@ stdenv.mkDerivation rec { "${symbols}/share/kicad/template" ]; }; - # We are emulating wrapGAppsHook, along with other variables to the wrapper + # We are emulating wrapGAppsHook3, along with other variables to the wrapper makeWrapperArgs = with passthru.libraries; [ "--prefix XDG_DATA_DIRS : ${base}/share" "--prefix XDG_DATA_DIRS : ${hicolor-icon-theme}/share" "--prefix XDG_DATA_DIRS : ${gnome.adwaita-icon-theme}/share" "--prefix XDG_DATA_DIRS : ${gtk3}/share/gsettings-schemas/${gtk3.name}" "--prefix XDG_DATA_DIRS : ${gsettings-desktop-schemas}/share/gsettings-schemas/${gsettings-desktop-schemas.name}" - # wrapGAppsHook did these two as well, no idea if it matters... + # wrapGAppsHook3 did these two as well, no idea if it matters... "--prefix XDG_DATA_DIRS : ${cups}/share" "--prefix GIO_EXTRA_MODULES : ${dconf}/lib/gio/modules" # required to open a bug report link in firefox-wayland diff --git a/pkgs/applications/science/electronics/openboardview/default.nix b/pkgs/applications/science/electronics/openboardview/default.nix index 4eaf29133a440..4aa9ab2b66f29 100644 --- a/pkgs/applications/science/electronics/openboardview/default.nix +++ b/pkgs/applications/science/electronics/openboardview/default.nix @@ -9,7 +9,7 @@ , SDL2 , fontconfig , gtk3 -, wrapGAppsHook +, wrapGAppsHook3 , darwin }: @@ -37,7 +37,7 @@ stdenv.mkDerivation rec { }) ]; - nativeBuildInputs = [ cmake pkg-config python3 wrapGAppsHook ]; + nativeBuildInputs = [ cmake pkg-config python3 wrapGAppsHook3 ]; buildInputs = [ SDL2 fontconfig gtk3 ] ++ lib.optionals stdenv.isDarwin [ Cocoa ]; diff --git a/pkgs/applications/science/logic/coq/default.nix b/pkgs/applications/science/logic/coq/default.nix index 37a8aba7d8c7a..68b424b32fb4a 100644 --- a/pkgs/applications/science/logic/coq/default.nix +++ b/pkgs/applications/science/logic/coq/default.nix @@ -11,7 +11,7 @@ , ocamlPackages_4_14 , ncurses , buildIde ? null # default is true for Coq < 8.14 and false for Coq >= 8.14 -, glib, gnome, wrapGAppsHook, makeDesktopItem, copyDesktopItems +, glib, gnome, wrapGAppsHook3, makeDesktopItem, copyDesktopItems , csdp ? null , version, coq-version ? null }@args: @@ -147,7 +147,7 @@ self = stdenv.mkDerivation { nativeBuildInputs = [ pkg-config ] ++ ocamlNativeBuildInputs ++ optional buildIde copyDesktopItems - ++ optional (buildIde && coqAtLeast "8.10") wrapGAppsHook + ++ optional (buildIde && coqAtLeast "8.10") wrapGAppsHook3 ++ optional (!coqAtLeast "8.6") gnumake42; buildInputs = [ ncurses ] ++ optionals buildIde diff --git a/pkgs/applications/science/logic/tlaplus/toolbox.nix b/pkgs/applications/science/logic/tlaplus/toolbox.nix index 288ddc06806a8..1d5cfa5c5d93c 100644 --- a/pkgs/applications/science/logic/tlaplus/toolbox.nix +++ b/pkgs/applications/science/logic/tlaplus/toolbox.nix @@ -7,7 +7,7 @@ , libXtst , glib , zlib -, wrapGAppsHook +, wrapGAppsHook3 }: let @@ -36,7 +36,7 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ makeShellWrapper - wrapGAppsHook + wrapGAppsHook3 ]; dontWrapGApps = true; diff --git a/pkgs/applications/science/logic/why3/default.nix b/pkgs/applications/science/logic/why3/default.nix index 74659a58f13ee..42256ae70aa69 100644 --- a/pkgs/applications/science/logic/why3/default.nix +++ b/pkgs/applications/science/logic/why3/default.nix @@ -2,7 +2,7 @@ , ocamlPackages, coqPackages, rubber, hevea, emacs , version ? "1.7.2" , ideSupport ? true -, wrapGAppsHook +, wrapGAppsHook3 }: stdenv.mkDerivation rec { @@ -20,7 +20,7 @@ stdenv.mkDerivation rec { strictDeps = true; nativeBuildInputs = lib.optional ideSupport - wrapGAppsHook + wrapGAppsHook3 ++ (with ocamlPackages; [ ocaml findlib menhir ]) ++ [ diff --git a/pkgs/applications/science/math/nasc/default.nix b/pkgs/applications/science/math/nasc/default.nix index d25f0ad344966..b544d5fc6b145 100644 --- a/pkgs/applications/science/math/nasc/default.nix +++ b/pkgs/applications/science/math/nasc/default.nix @@ -15,7 +15,7 @@ , libqalculate , intltool , gnuplot -, wrapGAppsHook +, wrapGAppsHook3 }: stdenv.mkDerivation rec { @@ -39,7 +39,7 @@ stdenv.mkDerivation rec { pkg-config python3 vala - wrapGAppsHook + wrapGAppsHook3 ]; buildInputs = [ diff --git a/pkgs/applications/science/math/qalculate-gtk/default.nix b/pkgs/applications/science/math/qalculate-gtk/default.nix index 2a2b4617d24b4..9673d7d479d02 100644 --- a/pkgs/applications/science/math/qalculate-gtk/default.nix +++ b/pkgs/applications/science/math/qalculate-gtk/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, intltool, autoreconfHook, pkg-config, libqalculate, gtk3, curl, wrapGAppsHook, desktopToDarwinBundle }: +{ lib, stdenv, fetchFromGitHub, intltool, autoreconfHook, pkg-config, libqalculate, gtk3, curl, wrapGAppsHook3, desktopToDarwinBundle }: stdenv.mkDerivation (finalAttrs: { pname = "qalculate-gtk"; @@ -13,7 +13,7 @@ stdenv.mkDerivation (finalAttrs: { hardeningDisable = [ "format" ]; - nativeBuildInputs = [ intltool pkg-config autoreconfHook wrapGAppsHook ] + nativeBuildInputs = [ intltool pkg-config autoreconfHook wrapGAppsHook3 ] ++ lib.optionals stdenv.isDarwin [ desktopToDarwinBundle ]; buildInputs = [ libqalculate gtk3 curl ]; enableParallelBuilding = true; diff --git a/pkgs/applications/science/math/rofi-calc/default.nix b/pkgs/applications/science/math/rofi-calc/default.nix index be126e5fa3974..14f8fe734bd68 100644 --- a/pkgs/applications/science/math/rofi-calc/default.nix +++ b/pkgs/applications/science/math/rofi-calc/default.nix @@ -7,7 +7,7 @@ , glib , cairo , gobject-introspection -, wrapGAppsHook +, wrapGAppsHook3 }: stdenv.mkDerivation rec { @@ -25,7 +25,7 @@ stdenv.mkDerivation rec { autoreconfHook pkg-config gobject-introspection - wrapGAppsHook + wrapGAppsHook3 ]; buildInputs = [ diff --git a/pkgs/applications/science/math/wxmaxima/default.nix b/pkgs/applications/science/math/wxmaxima/default.nix index 4d2815d129974..0009a04af6ac7 100644 --- a/pkgs/applications/science/math/wxmaxima/default.nix +++ b/pkgs/applications/science/math/wxmaxima/default.nix @@ -1,7 +1,7 @@ { lib , stdenv , fetchFromGitHub -, wrapGAppsHook +, wrapGAppsHook3 , cmake , gettext , maxima @@ -31,7 +31,7 @@ stdenv.mkDerivation (finalAttrs:{ ]; nativeBuildInputs = [ - wrapGAppsHook + wrapGAppsHook3 cmake gettext ]; diff --git a/pkgs/applications/science/medicine/xmedcon/default.nix b/pkgs/applications/science/medicine/xmedcon/default.nix index b09183f71b960..e5c5bf68d53a7 100644 --- a/pkgs/applications/science/medicine/xmedcon/default.nix +++ b/pkgs/applications/science/medicine/xmedcon/default.nix @@ -6,7 +6,7 @@ , pkg-config , libpng , zlib -, wrapGAppsHook +, wrapGAppsHook3 }: stdenv.mkDerivation rec { @@ -25,7 +25,7 @@ stdenv.mkDerivation rec { zlib ]; - nativeBuildInputs = [ pkg-config wrapGAppsHook ]; + nativeBuildInputs = [ pkg-config wrapGAppsHook3 ]; meta = with lib; { description = "An open source toolkit for medical image conversion "; diff --git a/pkgs/applications/science/physics/crystfel/default.nix b/pkgs/applications/science/physics/crystfel/default.nix index 33f2043603177..e7eb69fb4e1c1 100644 --- a/pkgs/applications/science/physics/crystfel/default.nix +++ b/pkgs/applications/science/physics/crystfel/default.nix @@ -18,7 +18,7 @@ , pandoc , eigen , pkg-config -, wrapGAppsHook +, wrapGAppsHook3 , flex , bison , doxygen @@ -193,7 +193,7 @@ stdenv.mkDerivation rec { sha256 = "sha256-ogNHWYfbxRmB5TdK8K0JpcCnYOOyXapQGSPh8mfp+Tc="; }; nativeBuildInputs = [ meson pkg-config ninja flex bison doxygen opencl-headers makeWrapper ] - ++ lib.optionals withGui [ wrapGAppsHook ]; + ++ lib.optionals withGui [ wrapGAppsHook3 ]; buildInputs = [ hdf5 gsl diff --git a/pkgs/applications/science/physics/xnec2c/default.nix b/pkgs/applications/science/physics/xnec2c/default.nix index 60afa09ecc8cd..ffdd4b6d0b07f 100644 --- a/pkgs/applications/science/physics/xnec2c/default.nix +++ b/pkgs/applications/science/physics/xnec2c/default.nix @@ -2,7 +2,7 @@ , stdenv , fetchurl , autoreconfHook -, wrapGAppsHook +, wrapGAppsHook3 , pkg-config , which , gtk3 @@ -23,7 +23,7 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ autoreconfHook - wrapGAppsHook + wrapGAppsHook3 pkg-config which ]; diff --git a/pkgs/applications/science/robotics/betaflight-configurator/default.nix b/pkgs/applications/science/robotics/betaflight-configurator/default.nix index 0792d3375d0a4..84f94102da136 100644 --- a/pkgs/applications/science/robotics/betaflight-configurator/default.nix +++ b/pkgs/applications/science/robotics/betaflight-configurator/default.nix @@ -1,4 +1,4 @@ -{lib, stdenv, fetchurl, unzip, makeDesktopItem, nwjs, wrapGAppsHook, gsettings-desktop-schemas, gtk3 }: +{lib, stdenv, fetchurl, unzip, makeDesktopItem, nwjs, wrapGAppsHook3, gsettings-desktop-schemas, gtk3 }: let pname = "betaflight-configurator"; @@ -24,7 +24,7 @@ stdenv.mkDerivation rec { find -name "lib*.so" -delete ''; - nativeBuildInputs = [ wrapGAppsHook unzip ]; + nativeBuildInputs = [ wrapGAppsHook3 unzip ]; buildInputs = [ gsettings-desktop-schemas gtk3 ]; diff --git a/pkgs/applications/science/robotics/emuflight-configurator/default.nix b/pkgs/applications/science/robotics/emuflight-configurator/default.nix index 2c51355eb54f0..62592b0cc3fc9 100644 --- a/pkgs/applications/science/robotics/emuflight-configurator/default.nix +++ b/pkgs/applications/science/robotics/emuflight-configurator/default.nix @@ -1,5 +1,5 @@ {lib, stdenv, fetchurl, unzip, makeDesktopItem, copyDesktopItems, nwjs -, wrapGAppsHook, gsettings-desktop-schemas, gtk3 }: +, wrapGAppsHook3, gsettings-desktop-schemas, gtk3 }: stdenv.mkDerivation rec { pname = "emuflight-configurator"; @@ -10,7 +10,7 @@ stdenv.mkDerivation rec { sha256 = "sha256-e4HNg5yr9V5LyT0hYP6gzw0tZm4dLidJg5MQtH3L3JI="; }; - nativeBuildInputs = [ wrapGAppsHook unzip copyDesktopItems ]; + nativeBuildInputs = [ wrapGAppsHook3 unzip copyDesktopItems ]; buildInputs = [ gsettings-desktop-schemas gtk3 ]; diff --git a/pkgs/applications/science/robotics/inav-configurator/default.nix b/pkgs/applications/science/robotics/inav-configurator/default.nix index f5216eaf6c921..1a6f5951ed348 100644 --- a/pkgs/applications/science/robotics/inav-configurator/default.nix +++ b/pkgs/applications/science/robotics/inav-configurator/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchurl, makeDesktopItem, copyDesktopItems, nwjs, wrapGAppsHook, gsettings-desktop-schemas, gtk3 }: +{ lib, stdenv, fetchurl, makeDesktopItem, copyDesktopItems, nwjs, wrapGAppsHook3, gsettings-desktop-schemas, gtk3 }: stdenv.mkDerivation rec { pname = "inav-configurator"; @@ -14,7 +14,7 @@ stdenv.mkDerivation rec { sha256 = "1i844dzzc5s5cr4vfpi6k2kdn8jiqq2n6c0fjqvsp4wdidwjahzw"; }; - nativeBuildInputs = [ copyDesktopItems wrapGAppsHook ]; + nativeBuildInputs = [ copyDesktopItems wrapGAppsHook3 ]; buildInputs = [ gsettings-desktop-schemas gtk3 ]; 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