Merge #303527: staging-next 2024-04-12

16 files changed, 65 insertions, 52 deletions

diff --git a/pkgs/tools/X11/xdg-utils/default.nix b/pkgs/tools/X11/xdg-utils/default.nix
index 3a45cdffe4210..03965a5c0557f 100644
--- a/pkgs/tools/X11/xdg-utils/default.nix
+++ b/pkgs/tools/X11/xdg-utils/default.nix
@@ -175,11 +175,14 @@ let
         "xscreensaver-command"      # Xscreensaver
         "xset"                      # generic-ish X
       ];
-      fix."$lockfile_command" = [ "lockfile" ];
       keep = {
         "$MV" = true;
         "$XPROP" = true;
+        "$lockfile_command" = true;
       };
+      execer = [
+        "cannot:${perl}/bin/perl"
+      ];
       prologue = "${writeText "xdg-screensaver-prologue" ''
         export PERL5LIB=${with perlPackages; makePerlPath [ NetDBus XMLTwig XMLParser X11Protocol ]}
         export PATH=$PATH:${coreutils}/bin
diff --git a/pkgs/tools/bootloaders/refind/default.nix b/pkgs/tools/bootloaders/refind/default.nix
index 9574632f4bad3..0a33305d10f7a 100644
--- a/pkgs/tools/bootloaders/refind/default.nix
+++ b/pkgs/tools/bootloaders/refind/default.nix
@@ -129,7 +129,7 @@ stdenv.mkDerivation rec {
       computers, such as all Intel-based Macs and recent (most 2011
       and later) PCs. rEFInd presents a boot menu showing all the EFI
       boot loaders on the EFI-accessible partitions, and optionally
-      BIOS-bootable partitions on Macs. EFI-compatbile OSes, including
+      BIOS-bootable partitions on Macs. EFI-compatible OSes, including
       Linux, provide boot loaders that rEFInd can detect and
       launch. rEFInd can launch Linux EFI boot loaders such as ELILO,
       GRUB Legacy, GRUB 2, and 3.3.0 and later kernels with EFI stub
diff --git a/pkgs/tools/compression/zstd/default.nix b/pkgs/tools/compression/zstd/default.nix
index 4ba37c1502f65..d42866cdda9f9 100644
--- a/pkgs/tools/compression/zstd/default.nix
+++ b/pkgs/tools/compression/zstd/default.nix
@@ -21,13 +21,13 @@
 
 stdenv.mkDerivation rec {
   pname = "zstd";
-  version = "1.5.5";
+  version = "1.5.6";
 
   src = fetchFromGitHub {
     owner = "facebook";
     repo = "zstd";
     rev = "v${version}";
-    sha256 = "sha256-tHHHIsQU7vJySrVhJuMKUSq11MzkmC+Pcsj00uFJdnQ=";
+    hash = "sha256-qcd92hQqVBjMT3hyntjcgk29o9wGQsg5Hg7HE5C0UNc=";
   };
 
   nativeBuildInputs = [ cmake ]
diff --git a/pkgs/tools/filesystems/ceph/default.nix b/pkgs/tools/filesystems/ceph/default.nix
index 27d7660607042..6b01e22f61695 100644
--- a/pkgs/tools/filesystems/ceph/default.nix
+++ b/pkgs/tools/filesystems/ceph/default.nix
@@ -239,8 +239,8 @@ let
           inherit version;
           hash = "sha256-hBSYub7GFiOxtsR+u8AjZ8B9YODhlfGXkIF/EMyNsLc=";
         };
-        pytestFlagsArray = [
-          "-W" "ignore::pytest.PytestRemovedIn8Warning"
+        disabledTests = old.disabledTests or [ ] ++ [
+          "test_export_md5_digest"
         ];
       });
 
@@ -270,7 +270,7 @@ let
     ceph-common
 
     # build time
-    cython
+    cython_0
 
     # debian/control
     bcrypt
diff --git a/pkgs/tools/misc/coreutils/default.nix b/pkgs/tools/misc/coreutils/default.nix
index 388dcd428c717..efcdce15bf028 100644
--- a/pkgs/tools/misc/coreutils/default.nix
+++ b/pkgs/tools/misc/coreutils/default.nix
@@ -32,19 +32,25 @@ let
 in
 stdenv.mkDerivation rec {
   pname = "coreutils" + (optionalString (!minimal) "-full");
-  version = "9.4";
+  version = "9.5";
 
   src = fetchurl {
     url = "mirror://gnu/coreutils/coreutils-${version}.tar.xz";
-    hash = "sha256-6mE6TPRGEjJukXIBu7zfvTAd4h/8O1m25cB+BAsnXlI=";
+    hash = "sha256-zTKO3qyS9qZl3p8yPJO3Eq8YWLwuDYjz9xAEaUcKG4o=";
   };
 
+  patches = lib.optionals stdenv.hostPlatform.isMusl [
+    # https://lists.gnu.org/archive/html/bug-coreutils/2024-03/msg00089.html
+    ./fix-test-failure-musl.patch
+  ];
+
   postPatch = ''
     # The test tends to fail on btrfs, f2fs and maybe other unusual filesystems.
     sed '2i echo Skipping dd sparse test && exit 77' -i ./tests/dd/sparse.sh
     sed '2i echo Skipping du threshold test && exit 77' -i ./tests/du/threshold.sh
     sed '2i echo Skipping cp reflink-auto test && exit 77' -i ./tests/cp/reflink-auto.sh
     sed '2i echo Skipping cp sparse test && exit 77' -i ./tests/cp/sparse.sh
+    sed '2i echo Skipping env test && exit 77' -i ./tests/env/env.sh
     sed '2i echo Skipping rm deep-2 test && exit 77' -i ./tests/rm/deep-2.sh
     sed '2i echo Skipping du long-from-unreadable test && exit 77' -i ./tests/du/long-from-unreadable.sh
 
@@ -69,6 +75,11 @@ stdenv.mkDerivation rec {
       echo "int main() { return 77; }" > "$f"
     done
 
+    # We don't have localtime in the sandbox
+    for f in gnulib-tests/{test-localtime_r.c,test-localtime_r-mt.c}; do
+      echo "int main() { return 77; }" > "$f"
+    done
+
     # intermittent failures on builders, unknown reason
     sed '2i echo Skipping du basic test && exit 77' -i ./tests/du/basic.sh
   '' + (optionalString (stdenv.hostPlatform.libc == "musl") (concatStringsSep "\n" [
diff --git a/pkgs/tools/misc/coreutils/fix-test-failure-musl.patch b/pkgs/tools/misc/coreutils/fix-test-failure-musl.patch
new file mode 100644
index 0000000000000..2d54dd27ab3fb
--- /dev/null
+++ b/pkgs/tools/misc/coreutils/fix-test-failure-musl.patch
@@ -0,0 +1,23 @@
+From 1defda6356c29c7f731bddb9e9231f594e01d9c9
+(adjusted so it can be applied on coreutils to coreutils tarball)
+
+Reported by Adept's Lab via Pádraig Brady at
+<https://lists.gnu.org/archive/html/bug-coreutils/2024-03/msg00086.html>.
+
+diff --git a/gnulib-tests/test-canonicalize.c b/gnulib-tests/test-canonicalize.c
+index 6763a525c9..5d19285c00 100644
+--- a/gnulib-tests/test-canonicalize.c
++++ b/gnulib-tests/test-canonicalize.c
+@@ -394,9 +394,9 @@ main (void)
+     ASSERT (stat ("/", &st1) == 0);
+     ASSERT (stat ("//", &st2) == 0);
+     bool same = psame_inode (&st1, &st2);
+-#if defined __MVS__ || defined MUSL_LIBC
+-    /* On IBM z/OS and musl libc, "/" and "//" both canonicalize to
+-       themselves, yet they both have st_dev == st_ino == 1.  */
++#if defined __MVS__
++    /* On IBM z/OS, "/" and "//" both canonicalize to themselves, yet they both
++       have st_dev == st_ino == 1.  */
+     same = false;
+ #endif
+     if (same)
diff --git a/pkgs/tools/misc/man-db/default.nix b/pkgs/tools/misc/man-db/default.nix
index e5829a56a8b43..8e2365f475d25 100644
--- a/pkgs/tools/misc/man-db/default.nix
+++ b/pkgs/tools/misc/man-db/default.nix
@@ -16,11 +16,11 @@
 
 stdenv.mkDerivation rec {
   pname = "man-db";
-  version = "2.12.0";
+  version = "2.12.1";
 
   src = fetchurl {
     url = "mirror://savannah/man-db/man-db-${version}.tar.xz";
-    hash = "sha256-QVpihKInZK0i/w9mcQ2FO+d5DdRRzXFDbj0lx02ZapU=";
+    hash = "sha256-3e4kna63jPkrq3lMzQacyLV1mSJl6iDiOeiHFW6IAmU=";
   };
 
   outputs = [ "out" "doc" ];
diff --git a/pkgs/tools/misc/plocate/default.nix b/pkgs/tools/misc/plocate/default.nix
index d4ea53b2301f9..b44cb0b148607 100644
--- a/pkgs/tools/misc/plocate/default.nix
+++ b/pkgs/tools/misc/plocate/default.nix
@@ -33,9 +33,6 @@ stdenv.mkDerivation rec {
     "-Ddbpath=locatedb"
   ];
 
-  # https://github.com/NixOS/nixpkgs/issues/300635
-  postInstall = ''chmod -R u-s,g-s "$out"'';
-
   meta = with lib; {
     description = "Much faster locate";
     homepage = "https://plocate.sesse.net/";
diff --git a/pkgs/tools/misc/thefuck/default.nix b/pkgs/tools/misc/thefuck/default.nix
index 150913c31d131..48d4f395b0474 100644
--- a/pkgs/tools/misc/thefuck/default.nix
+++ b/pkgs/tools/misc/thefuck/default.nix
@@ -1,6 +1,6 @@
 { lib, stdenv, fetchFromGitHub, buildPythonApplication
 , colorama, decorator, psutil, pyte, six
-, go, mock, pytestCheckHook, pytest-mock, pytest_7
+, go, mock, pytest7CheckHook, pytest-mock
 }:
 
 buildPythonApplication rec {
@@ -16,7 +16,7 @@ buildPythonApplication rec {
 
   propagatedBuildInputs = [ colorama decorator psutil pyte six ];
 
-  nativeCheckInputs = [ go mock (pytestCheckHook.override { pytest = pytest_7; }) pytest-mock ];
+  nativeCheckInputs = [ go mock pytest7CheckHook pytest-mock ];
 
   disabledTests = lib.optionals stdenv.isDarwin [
     "test_settings_defaults"
diff --git a/pkgs/tools/networking/curl/default.nix b/pkgs/tools/networking/curl/default.nix
index c2438f1b5777a..6559a5cf4ecb0 100644
--- a/pkgs/tools/networking/curl/default.nix
+++ b/pkgs/tools/networking/curl/default.nix
@@ -49,14 +49,14 @@ assert !((lib.count (x: x) [ gnutlsSupport opensslSupport wolfsslSupport rustlsS
 
 stdenv.mkDerivation (finalAttrs: {
   pname = "curl";
-  version = "8.6.0";
+  version = "8.7.1";
 
   src = fetchurl {
     urls = [
       "https://curl.haxx.se/download/curl-${finalAttrs.version}.tar.xz"
       "https://github.com/curl/curl/releases/download/curl-${builtins.replaceStrings [ "." ] [ "_" ] finalAttrs.version}/curl-${finalAttrs.version}.tar.xz"
     ];
-    hash = "sha256-PM1V2Rr5UWU534BiX4GMc03G8uz5utozx2dl6ZEh2xU=";
+    hash = "sha256-b+oqrGpGEPvQQAr7C83b5yWKZMY/H2jlhV68DGWXEM0=";
   };
 
   postPatch = ''
@@ -196,6 +196,7 @@ stdenv.mkDerivation (finalAttrs: {
       # nginx-http3 = useThisCurl nixosTests.nginx-http3;
       nginx-http3 = nixosTests.nginx-http3;
       pkg-config = testers.testMetaPkgConfig finalAttrs.finalPackage;
+    } // lib.optionalAttrs (stdenv.hostPlatform.system != "x86_64-darwin") {
       static = pkgsStatic.curl;
     } // lib.optionalAttrs (!stdenv.isDarwin) {
       fetchpatch = tests.fetchpatch.simple.override { fetchpatch = (fetchpatch.override { fetchurl = useThisCurl fetchurl; }) // { version = 1; }; };
@@ -210,7 +211,7 @@ stdenv.mkDerivation (finalAttrs: {
     maintainers = with maintainers; [ lovek323 ];
     platforms = platforms.all;
     # Fails to link against static brotli or gss
-    broken = stdenv.hostPlatform.isStatic && (brotliSupport || gssSupport);
+    broken = (stdenv.hostPlatform.isStatic && (brotliSupport || gssSupport || stdenv.hostPlatform.system == "x86_64-darwin")) || rustlsSupport;
     pkgConfigModules = [ "libcurl" ];
     mainProgram = "curl";
   };
diff --git a/pkgs/tools/networking/unbound/default.nix b/pkgs/tools/networking/unbound/default.nix
index 617f5f03f1c30..45c794a532eb3 100644
--- a/pkgs/tools/networking/unbound/default.nix
+++ b/pkgs/tools/networking/unbound/default.nix
@@ -1,7 +1,6 @@
 { stdenv
 , lib
 , fetchurl
-, fetchpatch
 , openssl
 , nettle
 , expat
@@ -51,37 +50,13 @@
 
 stdenv.mkDerivation (finalAttrs: {
   pname = "unbound";
-  version = "1.19.2";
+  version = "1.19.3";
 
   src = fetchurl {
     url = "https://nlnetlabs.nl/downloads/unbound/unbound-${finalAttrs.version}.tar.gz";
-    hash = "sha256-zFYNNFc0ImwbOecadpeX5/3eImXLt3685UJwS7pInlU=";
+    hash = "sha256-OuMivn3C+DFgPksDkUNVM61YYcIyLjSnYAap+2XrVrk=";
   };
 
-
-  # Cherry pick some already merged upstream patches for configure
-  patches = [
-    # Search for protobuf-c with pkg-config
-    # https://github.com/NLnetLabs/unbound/pull/999
-    (fetchpatch {
-      url = "https://github.com/NLnetLabs/unbound/commit/59d98b9ef64e597c331c27160715d7a1b40c8638.patch";
-      hash = "sha256-DvYoYBTXOwbR8Z0GRgt724WqX3dbIEOdICU2/VMRSVQ=";
-    })
-    # Fix for previous patch
-    # https://github.com/NLnetLabs/unbound/issues/1006
-    (fetchpatch {
-      url = "https://github.com/NLnetLabs/unbound/commit/93490a0fc1bf9e62e6edcd6b69f1463c7ac410e9.patch";
-      hash = "sha256-mBo63ZlayD3YkOgIoQN0dG+xuFq/BxcjBmSo1vapiYA=";
-      excludes = [ "doc/Changelog" ];
-    })
-    # Fix for previous patch
-    # https://github.com/NLnetLabs/unbound/commit/3f5175584b0bb9ff7d417bc195ec6e4316ae58d3
-    (fetchpatch {
-      url = "https://github.com/NLnetLabs/unbound/commit/3f5175584b0bb9ff7d417bc195ec6e4316ae58d3.patch";
-      hash = "sha256-DcWfvmk+4K3c9Z+4grwzEGIkEBYNpbTK3xuBqRI33fY=";
-    })
-  ];
-
   outputs = [ "out" "lib" "man" ]; # "dev" would only split ~20 kB
 
   nativeBuildInputs =
diff --git a/pkgs/tools/package-management/rpm/default.nix b/pkgs/tools/package-management/rpm/default.nix
index 541787942a0ee..e931ca16de7e8 100644
--- a/pkgs/tools/package-management/rpm/default.nix
+++ b/pkgs/tools/package-management/rpm/default.nix
@@ -44,7 +44,7 @@ stdenv.mkDerivation rec {
 
   # rpm/rpmlib.h includes popt.h, and then the pkg-config file mentions these as linkage requirements
   propagatedBuildInputs = [ popt nss db bzip2 libarchive libbfd ]
-    ++ lib.optional stdenv.isLinux elfutils;
+    ++ lib.optional (lib.meta.availableOn stdenv.hostPlatform elfutils) elfutils;
 
   env.NIX_CFLAGS_COMPILE = "-I${nspr.dev}/include/nspr -I${nss.dev}/include/nss";
 
diff --git a/pkgs/tools/security/gnupg/24.nix b/pkgs/tools/security/gnupg/24.nix
index cc3ae15e9a1c7..721c99dc4de9a 100644
--- a/pkgs/tools/security/gnupg/24.nix
+++ b/pkgs/tools/security/gnupg/24.nix
@@ -50,7 +50,7 @@ stdenv.mkDerivation rec {
     "--with-libgcrypt-prefix=${libgcrypt.dev}"
     "--with-libassuan-prefix=${libassuan.dev}"
     "--with-ksba-prefix=${libksba.dev}"
-    "--with-npth-prefix=${npth}"
+    "GPGRT_CONFIG=${lib.getDev libgpg-error}/bin/gpgrt-config"
   ]
   ++ lib.optional guiSupport "--with-pinentry-pgm=${pinentry}/${pinentry.binaryPath or "bin/pinentry"}"
   ++ lib.optional withTpm2Tss "--with-tss=intel"
diff --git a/pkgs/tools/security/onlykey-cli/default.nix b/pkgs/tools/security/onlykey-cli/default.nix
index 624290c6d5554..6d43a4df4afff 100644
--- a/pkgs/tools/security/onlykey-cli/default.nix
+++ b/pkgs/tools/security/onlykey-cli/default.nix
@@ -10,9 +10,12 @@ python3Packages.buildPythonApplication rec {
     sha256 = "sha256-ZmQnyZx9YlIIxMMdZ0U2zb+QANfcwrtG7iR1LpgzmBQ=";
   };
 
+  build-system = with python3Packages; [
+    cython
+  ];
+
   propagatedBuildInputs = with python3Packages; [
     aenum
-    cython
     ecdsa
     hidapi
     onlykey-solo-python
diff --git a/pkgs/tools/system/pciutils/default.nix b/pkgs/tools/system/pciutils/default.nix
index defad03c0b6b9..483b0b43661b3 100644
--- a/pkgs/tools/system/pciutils/default.nix
+++ b/pkgs/tools/system/pciutils/default.nix
@@ -7,11 +7,11 @@
 
 stdenv.mkDerivation rec {
   pname = "pciutils";
-  version = "3.11.1"; # with release-date database
+  version = "3.12.0"; # with release-date database
 
   src = fetchurl {
     url = "mirror://kernel/software/utils/pciutils/pciutils-${version}.tar.xz";
-    hash = "sha256-P0cq2GRHPeW6F/dlzJbvXzPhtzCRjTrdpvlFoqkpDfQ=";
+    hash = "sha256-8YXRFtX/mbeXSX786PGfHujMxaZouXoVnj0TRy9nQVQ=";
   };
 
   nativeBuildInputs = [ pkg-config ];
diff --git a/pkgs/tools/virtualization/cloud-init/default.nix b/pkgs/tools/virtualization/cloud-init/default.nix
index e5385bf7fbca0..3b8e619e864de 100644
--- a/pkgs/tools/virtualization/cloud-init/default.nix
+++ b/pkgs/tools/virtualization/cloud-init/default.nix
@@ -71,7 +71,7 @@ python3.pkgs.buildPythonApplication rec {
   ];
 
   nativeCheckInputs = with python3.pkgs; [
-    (pytestCheckHook.override { pytest = pytest_7; })
+    pytest7CheckHook
     httpretty
     dmidecode
     # needed for tests; at runtime we rather want the setuid wrapper