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authorPjotr Prins <pjotr.public01@thebird.nl>2008-10-07 15:12:06 +0000
committerPjotr Prins <pjotr.public01@thebird.nl>2008-10-07 15:12:06 +0000
commit3ce5cba9c79d8f62ee817aa2597dfe10c97bbaee (patch)
tree69bea1cdbc3393bc3e8b5b8109ca34efef815c3d /pkgs
parentb3aa5d6bfc58eef848a589707fd9e363b2508dfb (diff)
Added pkgMaintainer info to these 'biology' section packages.
svn path=/nixpkgs/trunk/; revision=12987
Diffstat (limited to 'pkgs')
-rw-r--r--pkgs/applications/science/biology/emboss/default.nix1
-rw-r--r--pkgs/applications/science/biology/mrbayes/default.nix1
-rw-r--r--pkgs/applications/science/biology/ncbi-tools/default.nix1
-rw-r--r--pkgs/applications/science/biology/pal2nal/default.nix2
-rw-r--r--pkgs/applications/science/biology/paml/default.nix1
-rw-r--r--pkgs/applications/science/biology/slr/default.nix4
-rw-r--r--pkgs/development/libraries/science/biology/biolib/default.nix1
7 files changed, 2 insertions, 9 deletions
diff --git a/pkgs/applications/science/biology/emboss/default.nix b/pkgs/applications/science/biology/emboss/default.nix
index 7859e0c760c65..96181c8ee6cbd 100644
--- a/pkgs/applications/science/biology/emboss/default.nix
+++ b/pkgs/applications/science/biology/emboss/default.nix
@@ -26,6 +26,5 @@ stdenv.mkDerivation {
     sequence data from the web.''; 
     license     = "GPL2";
     homepage    = http://emboss.sourceforge.net/;
-    pkgMaintainer = http://biolib.open-bio.org/;
   };
 }
diff --git a/pkgs/applications/science/biology/mrbayes/default.nix b/pkgs/applications/science/biology/mrbayes/default.nix
index 3ea7cf5796f50..78295faf69a8e 100644
--- a/pkgs/applications/science/biology/mrbayes/default.nix
+++ b/pkgs/applications/science/biology/mrbayes/default.nix
@@ -16,6 +16,5 @@ stdenv.mkDerivation rec {
     longDescription = ''Bayesian inference of phylogeny is based upon a quantity called the posterior probability distribution of trees, which is the probability of a tree conditioned on the observations. The conditioning is accomplished using Bayes's theorem. The posterior probability distribution of trees is impossible to calculate analytically; instead, MrBayes uses a simulation technique called Markov chain Monte Carlo (or MCMC) to approximate the posterior probabilities of trees.'';
     license     = "GPL2";
     homepage    = http://mrbayes.csit.fsu.edu/;
-    pkgMaintainer  = http://biolib.open-bio.org;
   };
 }
diff --git a/pkgs/applications/science/biology/ncbi-tools/default.nix b/pkgs/applications/science/biology/ncbi-tools/default.nix
index 024ae52f77bb8..45460c4b1aa9b 100644
--- a/pkgs/applications/science/biology/ncbi-tools/default.nix
+++ b/pkgs/applications/science/biology/ncbi-tools/default.nix
@@ -17,7 +17,6 @@ stdenv.mkDerivation rec {
     description = ''NCBI Bioinformatics toolbox (incl. blast)'';
     longDescription = ''The NCBI Bioinformatics toolsbox, including command-line utilties, libraries and include files. No X11 support (at this point).'';
     homepage = http://www.ncbi.nlm.nih.gov/IEB/ToolBox/; 
-    pkgMaintainer = http://BioLib.open-bio.org/;
     license = "GPL";
     priority = "5";   # zlib.so gives a conflict with zlib
   };
diff --git a/pkgs/applications/science/biology/pal2nal/default.nix b/pkgs/applications/science/biology/pal2nal/default.nix
index c2a48dc7a7882..ff9e35d921644 100644
--- a/pkgs/applications/science/biology/pal2nal/default.nix
+++ b/pkgs/applications/science/biology/pal2nal/default.nix
@@ -26,6 +26,6 @@ If the input is a pair of sequences, PAL2NAL automatically calculates KS and KA
 '';
     license        = "non-commercial";
     homepage       = http://coot.embl.de/pal2nal/;
-    pkgMaintainer  = http://biolib.open-bio.org;
+    pkgMaintainer  = "Pjotr Prins";
   };
 }
diff --git a/pkgs/applications/science/biology/paml/default.nix b/pkgs/applications/science/biology/paml/default.nix
index 225d28704749d..dc1bb206aaf59 100644
--- a/pkgs/applications/science/biology/paml/default.nix
+++ b/pkgs/applications/science/biology/paml/default.nix
@@ -28,6 +28,5 @@ stdenv.mkDerivation {
     longDescription = ''PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. It is maintained and distributed for academic use free of charge by Ziheng Yang. ANSI C source codes are distributed for UNIX/Linux/Mac OSX, and executables are provided for MS Windows. PAML is not good for tree making. It may be used to estimate parameters and test hypotheses to study the evolutionary process, when you have reconstructed trees using other programs such as PAUP*, PHYLIP, MOLPHY, PhyML, RaxML, etc.'';
     license     = "non-commercial";
     homepage    = http://abacus.gene.ucl.ac.uk/software/paml.html; 
-    pkgMaintainer = http://biolib.open-bio.org/;
   };
 }
diff --git a/pkgs/applications/science/biology/slr/default.nix b/pkgs/applications/science/biology/slr/default.nix
index 3268fe32f53bd..981cf2a670316 100644
--- a/pkgs/applications/science/biology/slr/default.nix
+++ b/pkgs/applications/science/biology/slr/default.nix
@@ -19,13 +19,11 @@ stdenv.mkDerivation {
   '';
 
   meta = {
-    description     = "SLR: Sitewise Likehood Ratio estimation of selection";
+    description     = "Phylogenetic Analysis by Maximum Likelihood (PAML)";
     longDescription = ''
 SLR is a program to detect sites in coding DNA that are unusually conserved and/or unusually variable (that is, evolving under purify or positive selection) by analysing the pattern of changes for an alignment of sequences on an evolutionary tree.     
 '';
     license     = "GPL3";
     homepage    = http://www.ebi.ac.uk/goldman/SLR/;
-    pkgMaintainer = http://biolib.open-bio.org/;
-
   };
 }
diff --git a/pkgs/development/libraries/science/biology/biolib/default.nix b/pkgs/development/libraries/science/biology/biolib/default.nix
index aa935c748fa25..cb18a8509bf09 100644
--- a/pkgs/development/libraries/science/biology/biolib/default.nix
+++ b/pkgs/development/libraries/science/biology/biolib/default.nix
@@ -17,6 +17,5 @@ written in C/C++ and makes them available for major Bio* languages: BioPerl,
 BioRuby, BioPython'';
     license     = "GPL2";
     homepage    = http://biolib.open-bio.org/; 
-    pkgMaintainer = http://biolib.open-bio.org/;
   };
 }