diff options
Diffstat (limited to 'pkgs/applications/science')
25 files changed, 25 insertions, 25 deletions
diff --git a/pkgs/applications/science/biology/deeptools/default.nix b/pkgs/applications/science/biology/deeptools/default.nix index 1739a4c999a44..eaf0b59327260 100644 --- a/pkgs/applications/science/biology/deeptools/default.nix +++ b/pkgs/applications/science/biology/deeptools/default.nix @@ -23,7 +23,7 @@ buildPythonApplication rec { deeptoolsintervals ]; - checkInputs = [ nose ]; + nativeCheckInputs = [ nose ]; meta = with lib; { homepage = "https://deeptools.readthedocs.io/en/develop"; diff --git a/pkgs/applications/science/biology/genmap/default.nix b/pkgs/applications/science/biology/genmap/default.nix index c2d1b8da7af12..c6f9cf1fb1932 100644 --- a/pkgs/applications/science/biology/genmap/default.nix +++ b/pkgs/applications/science/biology/genmap/default.nix @@ -22,7 +22,7 @@ stdenv.mkDerivation rec { doCheck = true; patches = [ ./gtest.patch ]; - checkInputs = [ gtest which ]; + nativeCheckInputs = [ gtest which ]; preCheck = "make genmap_algo_test"; # disable benchmarks diff --git a/pkgs/applications/science/biology/mrtrix/default.nix b/pkgs/applications/science/biology/mrtrix/default.nix index 99b6269737d1e..4cb130296aeca 100644 --- a/pkgs/applications/science/biology/mrtrix/default.nix +++ b/pkgs/applications/science/biology/mrtrix/default.nix @@ -33,7 +33,7 @@ stdenv.mkDerivation rec { qt5.qtsvg ]; - installCheckInputs = [ bc ]; + nativeInstallCheckInputs = [ bc ]; postPatch = '' patchShebangs ./build ./configure ./run_tests ./bin/* diff --git a/pkgs/applications/science/biology/samtools/default.nix b/pkgs/applications/science/biology/samtools/default.nix index 41129a667e914..c72dd1b19077d 100644 --- a/pkgs/applications/science/biology/samtools/default.nix +++ b/pkgs/applications/science/biology/samtools/default.nix @@ -19,7 +19,7 @@ stdenv.mkDerivation rec { ]; # tests require `bgzip` from the htslib package - checkInputs = [ htslib ]; + nativeCheckInputs = [ htslib ]; nativeBuildInputs = [ perl ]; diff --git a/pkgs/applications/science/electronics/verilator/default.nix b/pkgs/applications/science/electronics/verilator/default.nix index 0a190a1c90294..33d145c007566 100644 --- a/pkgs/applications/science/electronics/verilator/default.nix +++ b/pkgs/applications/science/electronics/verilator/default.nix @@ -17,7 +17,7 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; buildInputs = [ perl ]; nativeBuildInputs = [ flex bison python3 autoconf ]; - checkInputs = [ which ]; + nativeCheckInputs = [ which ]; doCheck = stdenv.isLinux; # darwin tests are broken for now... checkTarget = "test"; diff --git a/pkgs/applications/science/electronics/verilog/default.nix b/pkgs/applications/science/electronics/verilog/default.nix index 4994a1db7b2a2..994ecb8c13149 100644 --- a/pkgs/applications/science/electronics/verilog/default.nix +++ b/pkgs/applications/science/electronics/verilog/default.nix @@ -41,7 +41,7 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; - installCheckInputs = [ perl ]; + nativeInstallCheckInputs = [ perl ]; installCheckPhase = '' # copy tests to allow writing results diff --git a/pkgs/applications/science/electronics/xyce/default.nix b/pkgs/applications/science/electronics/xyce/default.nix index 2c52916bd9059..06872eae740f0 100644 --- a/pkgs/applications/science/electronics/xyce/default.nix +++ b/pkgs/applications/science/electronics/xyce/default.nix @@ -115,7 +115,7 @@ stdenv.mkDerivation rec { popd ''; - checkInputs = [ + nativeCheckInputs = [ bc perl (python3.withPackages (ps: with ps; [ numpy scipy ])) diff --git a/pkgs/applications/science/engineering/strictdoc/default.nix b/pkgs/applications/science/engineering/strictdoc/default.nix index ce834f7d576bd..c81652c5ae7e6 100644 --- a/pkgs/applications/science/engineering/strictdoc/default.nix +++ b/pkgs/applications/science/engineering/strictdoc/default.nix @@ -73,7 +73,7 @@ buildPythonApplication rec { XlsxWriter ]; - checkInputs = [ + nativeCheckInputs = [ pytestCheckHook ]; diff --git a/pkgs/applications/science/geometry/gama/default.nix b/pkgs/applications/science/geometry/gama/default.nix index 9ca7cc10c77f7..716fadd20fb9e 100644 --- a/pkgs/applications/science/geometry/gama/default.nix +++ b/pkgs/applications/science/geometry/gama/default.nix @@ -12,7 +12,7 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ texinfo zip ]; - checkInputs = [ octave libxml2 ]; + nativeCheckInputs = [ octave libxml2 ]; doCheck = true; meta = with lib ; { diff --git a/pkgs/applications/science/logic/beluga/default.nix b/pkgs/applications/science/logic/beluga/default.nix index 6a94d3f639e25..de9add38ed02b 100644 --- a/pkgs/applications/science/logic/beluga/default.nix +++ b/pkgs/applications/science/logic/beluga/default.nix @@ -22,7 +22,7 @@ ocamlPackages.buildDunePackage rec { ''; checkPhase = "./TEST"; - checkInputs = [ rsync ]; + nativeCheckInputs = [ rsync ]; doCheck = true; postInstall = '' diff --git a/pkgs/applications/science/logic/bitwuzla/default.nix b/pkgs/applications/science/logic/bitwuzla/default.nix index cc8651f69cfa0..4af4058339d93 100644 --- a/pkgs/applications/science/logic/bitwuzla/default.nix +++ b/pkgs/applications/science/logic/bitwuzla/default.nix @@ -48,7 +48,7 @@ stdenv.mkDerivation rec { "-DBtor2Tools_LIBRARIES=${lib.getLib btor2tools}/lib/libbtor2parser${stdenv.hostPlatform.extensions.sharedLibrary}" ] ++ lib.optional doCheck "-DTESTING=YES"; - checkInputs = [ python3 gtest ]; + nativeCheckInputs = [ python3 gtest ]; # two tests fail on darwin and 3 on aarch64-linux doCheck = stdenv.hostPlatform.isLinux && (!stdenv.hostPlatform.isAarch64); preCheck = let diff --git a/pkgs/applications/science/logic/boolector/default.nix b/pkgs/applications/science/logic/boolector/default.nix index 74927dd434d02..1d7e01c553b65 100644 --- a/pkgs/applications/science/logic/boolector/default.nix +++ b/pkgs/applications/science/logic/boolector/default.nix @@ -34,7 +34,7 @@ stdenv.mkDerivation rec { "-DUSE_LINGELING=YES" ] ++ (lib.optional (gmp != null) "-DUSE_GMP=YES"); - checkInputs = [ python3 ]; + nativeCheckInputs = [ python3 ]; doCheck = true; preCheck = let var = if stdenv.isDarwin then "DYLD_LIBRARY_PATH" else "LD_LIBRARY_PATH"; diff --git a/pkgs/applications/science/logic/kissat/default.nix b/pkgs/applications/science/logic/kissat/default.nix index 772e9c22a59a2..48d986cd5f6dd 100644 --- a/pkgs/applications/science/logic/kissat/default.nix +++ b/pkgs/applications/science/logic/kissat/default.nix @@ -15,7 +15,7 @@ stdenv.mkDerivation rec { outputs = [ "out" "dev" "lib" ]; - checkInputs = [ drat-trim p7zip ]; + nativeCheckInputs = [ drat-trim p7zip ]; doCheck = true; # 'make test' assumes that /etc/passwd is not writable. diff --git a/pkgs/applications/science/logic/klee/default.nix b/pkgs/applications/science/logic/klee/default.nix index e492daaced378..024e6e526c4e4 100644 --- a/pkgs/applications/science/logic/klee/default.nix +++ b/pkgs/applications/science/logic/klee/default.nix @@ -69,7 +69,7 @@ in stdenv.mkDerivation rec { cmake ]; - checkInputs = [ + nativeCheckInputs = [ gtest # Should appear BEFORE lit, since lit passes through python rather diff --git a/pkgs/applications/science/logic/monosat/default.nix b/pkgs/applications/science/logic/monosat/default.nix index 7295cdd30ae16..5b894d2c9376f 100644 --- a/pkgs/applications/science/logic/monosat/default.nix +++ b/pkgs/applications/science/logic/monosat/default.nix @@ -89,7 +89,7 @@ let --replace 'library_dir = "../../../../"' 'library_dir = "${core}/lib/"' ''; - checkInputs = [ pytestCheckHook ]; + nativeCheckInputs = [ pytestCheckHook ]; disabledTests = [ "test_assertAtMostOne" diff --git a/pkgs/applications/science/logic/symbiyosys/default.nix b/pkgs/applications/science/logic/symbiyosys/default.nix index ffc61ed1d03bb..19c021684b3ff 100644 --- a/pkgs/applications/science/logic/symbiyosys/default.nix +++ b/pkgs/applications/science/logic/symbiyosys/default.nix @@ -48,7 +48,7 @@ stdenv.mkDerivation { ''; doCheck = false; # not all provers are yet packaged... - checkInputs = [ python3 yosys boolector yices z3 aiger ]; + nativeCheckInputs = [ python3 yosys boolector yices z3 aiger ]; checkPhase = "make test"; meta = { diff --git a/pkgs/applications/science/math/bcal/default.nix b/pkgs/applications/science/math/bcal/default.nix index b23b433becd31..fedb219a0c194 100644 --- a/pkgs/applications/science/math/bcal/default.nix +++ b/pkgs/applications/science/math/bcal/default.nix @@ -23,7 +23,7 @@ stdenv.mkDerivation rec { doCheck = true; - checkInputs = [ bc python3Packages.pytestCheckHook ]; + nativeCheckInputs = [ bc python3Packages.pytestCheckHook ]; pytestFlagsArray = [ "test.py" ]; diff --git a/pkgs/applications/science/math/maxima/default.nix b/pkgs/applications/science/math/maxima/default.nix index 8bad09f178802..dffc212176b30 100644 --- a/pkgs/applications/science/math/maxima/default.nix +++ b/pkgs/applications/science/math/maxima/default.nix @@ -37,7 +37,7 @@ stdenv.mkDerivation rec { strictDeps = true; - checkInputs = [ + nativeCheckInputs = [ gnuplot ]; diff --git a/pkgs/applications/science/math/yacas/default.nix b/pkgs/applications/science/math/yacas/default.nix index f7dc2a344e185..7fa2fe1a6075e 100644 --- a/pkgs/applications/science/math/yacas/default.nix +++ b/pkgs/applications/science/math/yacas/default.nix @@ -52,7 +52,7 @@ stdenv.mkDerivation rec { preCheck = '' patchShebangs ../tests/test-yacas ''; - checkInputs = [ + nativeCheckInputs = [ gtest ]; doCheck = true; diff --git a/pkgs/applications/science/misc/bada-bib/default.nix b/pkgs/applications/science/misc/bada-bib/default.nix index 2304e9f77f4cb..af2f233966204 100644 --- a/pkgs/applications/science/misc/bada-bib/default.nix +++ b/pkgs/applications/science/misc/bada-bib/default.nix @@ -49,7 +49,7 @@ python3Packages.buildPythonApplication rec { libadwaita ]; - checkInputs = [ + nativeCheckInputs = [ appstream-glib desktop-file-utils ]; diff --git a/pkgs/applications/science/misc/cwltool/default.nix b/pkgs/applications/science/misc/cwltool/default.nix index 5693344e63641..f6d9f4510faf8 100644 --- a/pkgs/applications/science/misc/cwltool/default.nix +++ b/pkgs/applications/science/misc/cwltool/default.nix @@ -45,7 +45,7 @@ python3.pkgs.buildPythonApplication rec { typing-extensions ]; - checkInputs = with python3.pkgs; [ + nativeCheckInputs = with python3.pkgs; [ mock nodejs pytest-mock diff --git a/pkgs/applications/science/misc/nextinspace/default.nix b/pkgs/applications/science/misc/nextinspace/default.nix index 8f168ab83839f..78e21dcd8788e 100644 --- a/pkgs/applications/science/misc/nextinspace/default.nix +++ b/pkgs/applications/science/misc/nextinspace/default.nix @@ -25,7 +25,7 @@ python3.pkgs.buildPythonApplication rec { colorama ]; - checkInputs = with python3.pkgs; [ + nativeCheckInputs = with python3.pkgs; [ pytest-lazy-fixture pytestCheckHook requests-mock diff --git a/pkgs/applications/science/misc/sasview/default.nix b/pkgs/applications/science/misc/sasview/default.nix index 34ad91235e330..ca94be96d64e3 100644 --- a/pkgs/applications/science/misc/sasview/default.nix +++ b/pkgs/applications/science/misc/sasview/default.nix @@ -55,7 +55,7 @@ python3.pkgs.buildPythonApplication rec { "\${qtWrapperArgs[@]}" ]; - checkInputs = with python3.pkgs; [ + nativeCheckInputs = with python3.pkgs; [ pytestCheckHook unittest-xml-reporting ]; diff --git a/pkgs/applications/science/misc/snakemake/default.nix b/pkgs/applications/science/misc/snakemake/default.nix index 89b174515c479..f162e2329a74d 100644 --- a/pkgs/applications/science/misc/snakemake/default.nix +++ b/pkgs/applications/science/misc/snakemake/default.nix @@ -47,7 +47,7 @@ python3.pkgs.buildPythonApplication rec { # for the current basic test suite. Tibanna and Tes require extra # setup. - checkInputs = with python3.pkgs; [ + nativeCheckInputs = with python3.pkgs; [ pandas pytestCheckHook requests-mock diff --git a/pkgs/applications/science/misc/toil/default.nix b/pkgs/applications/science/misc/toil/default.nix index 43cb6bbbc7ee3..7fc070f4f9f75 100644 --- a/pkgs/applications/science/misc/toil/default.nix +++ b/pkgs/applications/science/misc/toil/default.nix @@ -36,7 +36,7 @@ python3.pkgs.buildPythonApplication rec { typing-extensions ]; - checkInputs = [ + nativeCheckInputs = [ rsync ] ++ (with python3.pkgs; [ boto |