about summary refs log tree commit diff
path: root/pkgs/applications/science/biology
AgeCommit message (Expand)AuthorFilesLines
2024-01-24Merge pull request #283425 from r-ryantm/auto-update/stacksNick Cao1-2/+2
2024-01-24igv: 2.17.0 -> 2.17.1R. Ryantm1-2/+2
2024-01-24stacks: 2.65 -> 2.66R. Ryantm1-2/+2
2024-01-23Merge pull request #282666 from wegank/ebtks-refactorWeijia Wang2-6/+16
2024-01-21inormalize: fix build on darwinWeijia Wang1-0/+5
2024-01-21n3: fix build on darwinWeijia Wang1-0/+5
2024-01-21ebtks: migrate to by-name, rename from EBTKSWeijia Wang2-6/+6
2024-01-20SPAdes: fix buildsuperherointj1-0/+5
2024-01-13Merge pull request #279509 from r-ryantm/auto-update/igvWeijia Wang1-2/+2
2024-01-11Merge pull request #278776 from TomaSajt/trimmomaticWeijia Wang1-13/+21
2024-01-08igv: 2.16.2 -> 2.17.0R. Ryantm1-2/+2
2024-01-04trimmomatic: make deterministic and clean upTomaSajt1-13/+21
2024-01-03Merge pull request #276101 from r-ryantm/auto-update/dellyWeijia Wang1-2/+2
2023-12-24Merge pull request #276231 from r-ryantm/auto-update/samtoolsFabián Heredia Montiel1-2/+2
2023-12-23seqkit: 2.6.0 -> 2.6.1R. Ryantm1-3/+3
2023-12-23samtools: 1.18 -> 1.19R. Ryantm1-2/+2
2023-12-22delly: 1.1.8 -> 1.2.6R. Ryantm1-2/+2
2023-12-21Merge pull request #274810 from r-ryantm/auto-update/messer-slimOTABI Tomoya1-2/+2
2023-12-20Merge pull request #275350 from r-ryantm/auto-update/lastJustin Bedő1-2/+2
2023-12-19last: 1518 -> 1519R. Ryantm1-2/+2
2023-12-19Merge pull request #273915 from r-ryantm/auto-update/bcftoolsOTABI Tomoya1-2/+2
2023-12-16messer-slim: 4.0.1 -> 4.1R. Ryantm1-2/+2
2023-12-15gatk: 4.4.0.0 -> 4.5.0.0R. Ryantm1-2/+2
2023-12-13bcftools: 1.18 -> 1.19R. Ryantm1-2/+2
2023-12-12Merge pull request #273382 from wegank/strelka-aarch64Weijia Wang1-3/+23
2023-12-12Merge pull request #273485 from r-ryantm/auto-update/kalignOTABI Tomoya1-2/+2
2023-12-11strelka: add aarch64-linux supportWeijia Wang1-3/+13
2023-12-11kalign: 3.3.5 -> 3.4.0R. Ryantm1-2/+2
2023-12-11poretools: mark as brokenAaron Jheng1-2/+3
2023-12-10strelka: fix build on gcc-12Sergei Trofimovich1-1/+11
2023-12-05last: 1499 -> 1518R. Ryantm1-2/+2
2023-12-04Merge pull request #266665 from r-ryantm/auto-update/seqkitWeijia Wang1-3/+3
2023-12-04Merge pull request #264994 from r-ryantm/auto-update/kallistoWeijia Wang1-2/+2
2023-11-30Merge pull request #186462 from apraga/bio-bigfile-1.07Doron Behar1-5/+1
2023-11-28mosdepth: build with a lockfileEmery Hemingway1-25/+0
2023-11-26igv: Fix missing wrapGAppsHook causing causing GLib-GIO-ERRORStian Lågstad1-1/+2
2023-11-25Merge pull request #269640 from natsukium/dssp/updateOTABI Tomoya1-2/+2
2023-11-24dssp: 4.4.4.1 -> 4.4.5natsukium1-2/+2
2023-11-21perlPackages.BioBigFile: Addressing reviewer changeAlexis Praga1-27/+0
2023-11-21perlPackages.BioBigfile: init at 1.07Alexis Praga1-0/+27
2023-11-17treewide: s_targetPlatform_hostPlatform_ in non-compiler packagesAdam Joseph1-1/+1
2023-11-15picard-tools: 3.1.0 -> 3.1.1R. Ryantm1-2/+2
2023-11-12kent: enable patches if needed.Alexis Praga1-5/+1
2023-11-10seqkit: 2.5.1 -> 2.6.0R. Ryantm1-3/+3
2023-11-09bedtools: 2.31.0 -> 2.31.1R. Ryantm1-2/+2
2023-11-08Merge pull request #264872 from r-ryantm/auto-update/lastJustin Bedő1-2/+2
2023-11-05treewide: change pythonForBuild to pythonOnBuildForHostAdam Joseph1-1/+1
2023-11-03Merge pull request #243431 from natsukium/kssd/updateOTABI Tomoya1-15/+34
2023-11-03kssd: enable aarch64-linux support & testsnatsukium1-1/+12
2023-11-03kssd: refactornatsukium1-7/+16
generated by cgit-pink 1.4.1 (git 2.36.1) at 2024-08-16 12:45:48 +0000