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2019-11-04deeptools: init at 3.3.1scalavision1-0/+42
2019-11-03star: 2.7.2b -> 2.7.3aR. RyanTM1-2/+2
2019-10-26EZminc: 2017-08-29 -> 2019-07-25; mark unbrokenBen Darwin1-7/+7
2019-10-24truvari: init at 1.3.2 (#70877)scalavision1-0/+43
2019-10-23picard-tools: 2.20.8 -> 2.21.1 (#71748)R. RyanTM1-2/+2
2019-10-22dcm2niix: 1.0.20190410 -> 1.0.20190902R. RyanTM1-2/+2
2019-10-13Merge pull request #69961 from r-ryantm/auto-update/starRenaud1-2/+2
2019-10-10delly: init at 0.8.1 (#70871)scalavision1-0/+40
2019-10-08treewide: mark some broken packages as brokenLinus Heckemann3-0/+3
2019-10-03SPAdes: init at 3.13.1 (#63082)Bruno Bzeznik1-0/+27
2019-09-29Merge pull request #69735 from r-ryantm/auto-update/picard-toolsRyan Mulligan1-2/+2
2019-09-28star: 2.7.1a -> 2.7.2bR. RyanTM1-2/+2
2019-09-27picard-tools: 2.20.5 -> 2.20.8R. RyanTM1-2/+2
2019-09-27Merge pull request #63117 from bzizou/macseAaron Andersen1-0/+32
2019-09-24macse: init at 2.03Bruno Bzeznik1-0/+32
2019-09-14maintainer: mimadrid: update github username and personal dataMiguel Madrid Mencía3-3/+3
2019-09-13ants: use itk 4.xLinus Heckemann1-6/+5
2019-09-08treewide: remove redundant quotesvolth1-1/+1
2019-09-08Merge remote-tracking branch 'upstream/gcc-8' into staging-nextFrederik Rietdijk1-1/+9
2019-09-06Merge master into staging-nextFrederik Rietdijk1-2/+2
2019-09-06bedtools: 2.28.0 -> 2.29.0Justin Bedo1-2/+2
2019-09-06Merge branch 'master' into staging-nextJan Tojnar1-0/+23
2019-09-05xenomapper: init 1.0.2Justin Bedo1-0/+23
2019-09-03Merge remote-tracking branch 'origin/master' into gcc-8Franz Pletz36-48/+109
2019-09-02Merge branch 'master' into stagingVladimír Čunát1-8/+11
2019-08-31kallisto: 0.43.1 -> 0.46.0Tadeo Kondrak1-8/+11
2019-08-31Merge staging-next into stagingFrederik Rietdijk1-0/+31
2019-08-31Merge master into staging-nextFrederik Rietdijk1-0/+31
2019-08-31Merge pull request #63127 from bzizou/trimalLassulus1-0/+31
2019-08-31Merge staging-next into stagingFrederik Rietdijk1-0/+38
2019-08-31Merge master into staging-nextFrederik Rietdijk1-0/+38
2019-08-28treewide: remove redundant recvolth3-3/+3
2019-08-27Merge pull request #64669 from luispedro/add_sortmernaLéo Gaspard1-0/+38
2019-08-27sortmerna: init at 3.0.3Luis Pedro Coelho1-0/+38
2019-08-25Merge remote-tracking branch 'upstream/master' into gcc-8Robin Gloster13-25/+89
2019-08-24Merge branch 'master' into staging-nextVladimír Čunát1-2/+2
2019-08-19picard-tools: 2.20.4 -> 2.20.5R. RyanTM1-2/+2
2019-08-15treewide: name -> pname (easy cases) (#66585)volth34-40/+29
2019-08-04picard-tools: 2.20.3 -> 2.20.4R. RyanTM1-2/+2
2019-08-01Merge pull request #63282 from jbedo/strelkaRobin Gloster1-3/+4
2019-07-22Merge pull request #64897 from bzizou/est-sfslewo1-0/+28
2019-07-20bedtools: 2.27.1 -> 2.28.0Justin Bedo1-4/+4
2019-07-17stacks: 2.4 -> 2.41R. RyanTM1-2/+2
2019-07-16Merge pull request #64862 from r-ryantm/auto-update/picard-toolsRyan Mulligan1-2/+2
2019-07-16est-sfs: init at 2.03Bruno Bzeznik1-0/+28
2019-07-15picard-tools: 2.20.2 -> 2.20.3R. RyanTM1-2/+2
2019-07-13Merge pull request #64324 from jbedo/hisat2worldofpeace1-2/+3
2019-07-10treewide: fix redirect URLsRyan Mulligan1-1/+1
2019-07-05hisat2: fix missing perl dependencyJustin Bedo1-2/+3
2019-06-27Merge pull request #63488 from jbedo/octopusmarkuskowa1-0/+30
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