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2023-08-25Merge master into staging-nextgithub-actions[bot]1-2/+2
2023-08-25iqtree: 2.2.2.6 -> 2.2.2.7R. Ryantm1-2/+2
2023-08-24Merge master into staging-nextgithub-actions[bot]1-0/+55
2023-08-24Merge pull request #248172 from alxsimon/bwaOTABI Tomoya1-0/+55
2023-08-23bwa-mem2: init at version 2.2.1Alexis Simon1-0/+55
2023-08-21Merge staging-next into staginggithub-actions[bot]2-4/+5
2023-08-21Merge pull request #249878 from jbedo/lastOTABI Tomoya1-2/+2
2023-08-21mosdepth: build with Nim-2Emery Hemingway1-0/+1
2023-08-21nimPackages.hts: 0.3.4 -> 0.3.23, rename from hts-nimEmery Hemingway1-2/+2
2023-08-19Merge staging-next into staginggithub-actions[bot]1-0/+41
2023-08-18last: 1460 -> 1471Justin Bedo1-2/+2
2023-08-18bamtools: init at 2.5.2natsukium1-0/+41
2023-08-15Merge pull request #248683 from oxij/tree/source-root-continues-3Pol Dellaiera1-1/+1
2023-08-12treewide: remove unneeded dots and slashes in `sourceRoot`sJan Malakhovski1-1/+1
2023-08-11macs2: 2.2.8 -> 2.2.9.1Theodore Ni1-11/+20
2023-08-10seqkit: 2.5.0 -> 2.5.1R. Ryantm1-2/+2
2023-08-07samtools: 1.17 -> 1.18R. Ryantm1-2/+2
2023-08-06Merge pull request #236810 from natsukium/cmtk/updateMario Rodas1-11/+27
2023-08-04Merge pull request #246863 from r-ryantm/auto-update/picard-toolsWeijia Wang1-2/+2
2023-08-03treewide: noop: refer to `src.name` or similar in `sourceRoot` where appropri...Jan Malakhovski3-3/+3
2023-08-02picard-tools: 3.0.0 -> 3.1.0R. Ryantm1-2/+2
2023-08-02Merge pull request #246815 from r-ryantm/auto-update/veryfasttreeWeijia Wang1-13/+22
2023-08-02Merge pull request #246485 from r-ryantm/auto-update/bcftoolsWeijia Wang1-2/+2
2023-08-02veryfasttree: use `finalAttrs` patternPol Dellaiera1-11/+20
2023-08-02veryfasttree: 4.0.1 -> 4.0.2R. Ryantm1-2/+2
2023-08-01Merge pull request #243407 from natsukium/paml/updateWeijia Wang1-13/+22
2023-08-01bcftools: 1.17 -> 1.18R. Ryantm1-2/+2
2023-07-25last: 1456 -> 1460R. Ryantm1-2/+2
2023-07-24Merge master into staging-nextgithub-actions[bot]1-2/+2
2023-07-23dssp: 4.3.1 -> 4.4.2natsukium1-2/+2
2023-07-22various packages: pin boost179Tobias Mayer1-2/+2
2023-07-17seqkit: 2.4.0 -> 2.5.0R. Ryantm1-3/+3
2023-07-14paml: refactornatsukium1-4/+13
2023-07-14paml: 4.9j -> 4.10.7natsukium1-11/+11
2023-07-14delly: enable openmpnatsukium1-1/+3
2023-07-14delly: refactornatsukium1-10/+28
2023-07-13delly: enable darwin supportnatsukium1-2/+11
2023-07-11cmtk: fix formatnatsukium1-5/+5
2023-07-11cmtk: enable some compile optionsnatsukium1-1/+17
2023-07-11cmtk: fix darwin buildnatsukium1-3/+3
2023-07-09kallisto: 0.48.0 -> 0.50.0R. Ryantm1-2/+2
2023-07-09Merge pull request #242302 from r-ryantm/auto-update/nest-mpiWeijia Wang1-2/+2
2023-07-08nest-mpi: 3.4 -> 3.5R. Ryantm1-2/+2
2023-07-08veryfasttree: 4.0 -> 4.0.1R. Ryantm1-2/+2
2023-07-03Merge pull request #241136 from r-ryantm/auto-update/veryfasttreeWeijia Wang1-3/+5
2023-07-03veryfasttree: fix build on darwinWeijia Wang1-1/+3
2023-07-02Merge pull request #235322 from natsukium/dssp/updateMartin Weinelt1-15/+28
2023-07-02pkgs/applications: replace "${version}" with versionfigsoda2-2/+2
2023-07-02veryfasttree: 3.1.1 -> 4.0R. Ryantm1-2/+2
2023-07-01dssp: fix formatnatsukium1-10/+23
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